# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|435850243|ref|YP_007311829.1| - 1.1e-22 79.8 0.3 2.6e-22 78.6 0.3 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|435850243|ref|YP_007311829.1| - 2.9e-13 50.3 0.1 7.7e-13 48.9 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|435850243|ref|YP_007311829.1| - 8.1e-11 42.6 0.6 1.5e-09 38.4 0.2 2.4 2 1 0 2 2 1 1 AAA ATPase domain AAA PF00004.29 gi|435850243|ref|YP_007311829.1| - 8.1e-09 36.0 0.0 1.7e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|435850243|ref|YP_007311829.1| - 2.9e-07 30.1 0.0 6.5e-07 29.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|435850243|ref|YP_007311829.1| - 1.9e-05 24.7 0.8 0.0001 22.3 0.8 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea KAP_NTPase PF07693.14 gi|435850243|ref|YP_007311829.1| - 0.00014 21.2 1.3 0.3 10.3 0.8 2.2 1 1 0 2 2 2 2 KAP family P-loop domain NACHT PF05729.12 gi|435850243|ref|YP_007311829.1| - 0.00015 21.7 0.0 0.00027 20.9 0.0 1.4 1 0 0 1 1 1 1 NACHT domain DUF2075 PF09848.9 gi|435850243|ref|YP_007311829.1| - 0.0013 18.1 0.0 0.0017 17.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) RuvB_N PF05496.12 gi|435850243|ref|YP_007311829.1| - 0.002 17.9 0.0 0.5 10.1 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|435850243|ref|YP_007311829.1| - 0.002 17.8 0.0 0.0045 16.7 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|435850243|ref|YP_007311829.1| - 0.0033 16.6 0.1 0.007 15.5 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF815) UDPG_MGDP_dh_C PF03720.15 gi|435850243|ref|YP_007311829.1| - 0.005 17.2 0.1 0.013 15.9 0.1 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AAA_assoc_2 PF16193.5 gi|435850243|ref|YP_007311829.1| - 0.0075 16.6 0.1 0.019 15.3 0.1 1.7 1 0 0 1 1 1 1 AAA C-terminal domain AAA_18 PF13238.6 gi|435850243|ref|YP_007311829.1| - 0.01 16.4 0.1 0.029 14.9 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_25 PF13481.6 gi|435850243|ref|YP_007311829.1| - 0.011 15.3 0.0 0.027 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|435850243|ref|YP_007311829.1| - 0.016 15.0 0.3 0.04 13.6 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_2 PF07724.14 gi|435850243|ref|YP_007311829.1| - 0.02 15.0 0.6 0.12 12.5 0.6 2.1 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) DEAD PF00270.29 gi|435850243|ref|YP_007311829.1| - 0.033 14.0 5.5 2.6 7.8 0.2 2.8 2 1 0 3 3 3 0 DEAD/DEAH box helicase TsaE PF02367.17 gi|435850243|ref|YP_007311829.1| - 0.043 13.8 0.0 0.09 12.8 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE FtsK_SpoIIIE PF01580.18 gi|435850243|ref|YP_007311829.1| - 0.047 13.0 0.2 0.85 8.9 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family Bac_DnaA PF00308.18 gi|435850243|ref|YP_007311829.1| - 0.062 13.1 0.0 0.64 9.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial dnaA protein Zeta_toxin PF06414.12 gi|435850243|ref|YP_007311829.1| - 0.074 12.3 0.1 0.3 10.3 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_7 PF12775.7 gi|435850243|ref|YP_007311829.1| - 0.085 12.4 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|435850243|ref|YP_007311829.1| - 0.11 12.9 0.1 0.37 11.2 0.1 2.1 2 1 0 2 2 1 0 RNA helicase ResIII PF04851.15 gi|435850243|ref|YP_007311829.1| - 0.15 12.0 0.0 0.34 10.9 0.0 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Peptidase_S24 PF00717.23 gi|435850244|ref|YP_007311830.1| - 4.2e-05 23.4 0.2 8.3e-05 22.5 0.2 1.5 1 0 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.16 gi|435850245|ref|YP_007311831.1| - 2.7e-15 56.3 0.0 4.5e-15 55.6 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|435850245|ref|YP_007311831.1| - 7e-10 39.7 0.0 1.1e-09 39.0 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|435850245|ref|YP_007311831.1| - 2e-09 37.8 0.0 5.5e-09 36.4 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.25 gi|435850245|ref|YP_007311831.1| - 1.4e-05 24.9 0.1 5.1e-05 23.2 0.0 2.0 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain RACo_C_ter PF14574.6 gi|435850246|ref|YP_007311832.1| - 1.6e-69 233.8 1.9 4.2e-69 232.5 1.9 1.7 1 1 0 1 1 1 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|435850246|ref|YP_007311832.1| - 5.5e-09 35.9 0.0 3.5e-08 33.3 0.1 2.3 2 1 0 2 2 2 1 RACo middle region Fer4_21 PF14697.6 gi|435850246|ref|YP_007311832.1| - 2.9e-06 27.3 11.2 6.3e-06 26.2 11.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435850246|ref|YP_007311832.1| - 3.5e-06 27.1 11.4 6.3e-06 26.3 11.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435850246|ref|YP_007311832.1| - 6.2e-06 26.1 12.4 0.00056 19.9 0.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435850246|ref|YP_007311832.1| - 2.2e-05 25.0 10.7 4.3e-05 24.0 10.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435850246|ref|YP_007311832.1| - 0.00027 21.0 11.9 0.00085 19.4 12.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|435850246|ref|YP_007311832.1| - 0.00046 19.9 10.5 0.033 14.0 3.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|435850246|ref|YP_007311832.1| - 0.00076 19.9 4.6 0.046 14.2 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435850246|ref|YP_007311832.1| - 0.0033 17.4 11.5 0.08 13.1 2.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|435850246|ref|YP_007311832.1| - 0.011 16.3 5.6 0.079 13.5 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435850246|ref|YP_007311832.1| - 0.028 15.3 12.9 1.5 9.8 2.4 2.6 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|435850246|ref|YP_007311832.1| - 1.2 9.8 14.6 2.4 8.9 3.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|435850246|ref|YP_007311832.1| - 3 9.0 14.9 7.6 7.7 3.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DUF2769 PF10967.8 gi|435850247|ref|YP_007311833.1| - 7e-12 45.8 12.3 7e-12 45.8 12.3 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2769) Myticin-prepro PF10690.9 gi|435850247|ref|YP_007311833.1| - 8.9 6.6 12.7 2.3e+02 2.1 12.7 2.1 1 1 0 1 1 1 0 Myticin pre-proprotein from the mussel TPR_2 PF07719.17 gi|435850248|ref|YP_007311834.1| - 8.2e-29 97.4 13.0 1e-07 31.5 0.3 6.1 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_1 PF00515.28 gi|435850248|ref|YP_007311834.1| - 1.5e-26 91.1 16.3 2.2e-07 30.4 0.2 6.4 6 1 1 7 7 7 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|435850248|ref|YP_007311834.1| - 1.1e-21 76.3 3.7 0.00036 20.2 0.0 7.5 5 2 3 8 8 8 4 TPR repeat TPR_16 PF13432.6 gi|435850248|ref|YP_007311834.1| - 6.4e-17 61.9 0.0 0.00058 20.4 0.1 4.4 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|435850248|ref|YP_007311834.1| - 2e-15 55.6 10.9 0.011 15.9 0.1 6.1 5 1 1 6 6 6 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|435850248|ref|YP_007311834.1| - 2.4e-15 56.6 3.1 0.017 15.4 0.0 5.2 3 1 2 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|435850248|ref|YP_007311834.1| - 7.9e-15 54.3 2.9 0.014 16.1 0.2 5.4 3 2 2 5 5 5 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|435850248|ref|YP_007311834.1| - 3.1e-14 53.0 2.0 4.4e-09 36.4 0.0 3.3 3 0 0 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|435850248|ref|YP_007311834.1| - 1.1e-12 47.8 0.0 7.3e-05 22.8 0.0 3.6 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|435850248|ref|YP_007311834.1| - 3.6e-12 46.6 3.6 1.1e-06 29.0 0.0 4.5 2 1 2 4 4 4 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|435850248|ref|YP_007311834.1| - 3.1e-10 39.7 2.2 0.028 14.8 0.0 5.0 6 1 0 6 6 4 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|435850248|ref|YP_007311834.1| - 1.1e-08 34.4 1.0 0.69 10.1 0.0 4.9 5 0 0 5 5 4 3 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|435850248|ref|YP_007311834.1| - 4.2e-07 30.0 6.9 0.00013 22.0 2.3 3.4 1 1 2 3 3 3 2 Putative TPR-like repeat Fis1_TPR_C PF14853.6 gi|435850248|ref|YP_007311834.1| - 5.9e-07 29.5 1.7 0.59 10.2 0.0 4.2 3 1 1 4 4 4 2 Fis1 C-terminal tetratricopeptide repeat TPR_6 PF13174.6 gi|435850248|ref|YP_007311834.1| - 7.9e-07 29.3 8.6 2.9 8.7 0.1 5.7 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_21 PF09976.9 gi|435850248|ref|YP_007311834.1| - 5.7e-05 22.9 0.0 1.1 8.9 0.0 3.4 2 1 0 3 3 3 1 Tetratricopeptide repeat-like domain TPR_10 PF13374.6 gi|435850248|ref|YP_007311834.1| - 0.00011 22.0 3.4 1.2 9.1 0.0 5.6 7 0 0 7 7 6 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|435850248|ref|YP_007311834.1| - 0.00036 19.6 0.0 0.16 10.8 0.0 3.3 2 1 2 4 4 4 2 NMDA receptor-regulated protein 1 RPN7 PF10602.9 gi|435850248|ref|YP_007311834.1| - 0.012 15.3 3.4 5.1 6.8 0.0 3.7 3 1 1 4 4 4 0 26S proteasome subunit RPN7 DUF5113 PF17140.4 gi|435850248|ref|YP_007311834.1| - 0.022 14.5 0.6 2.7 7.8 0.0 3.4 2 1 1 4 4 4 0 Domain of unknown function (DUF5113) SHNi-TPR PF10516.9 gi|435850248|ref|YP_007311834.1| - 0.049 13.1 0.1 1.2 8.7 0.0 2.9 2 0 0 2 2 2 0 SHNi-TPR TPR_20 PF14561.6 gi|435850248|ref|YP_007311834.1| - 0.11 12.8 0.0 3.6 8.0 0.0 2.8 3 0 0 3 3 2 0 Tetratricopeptide repeat APG6 PF04111.12 gi|435850248|ref|YP_007311834.1| - 0.12 12.4 0.0 0.33 10.9 0.0 1.7 1 0 0 1 1 1 0 Apg6 BARA domain TPR_3 PF07720.12 gi|435850248|ref|YP_007311834.1| - 0.19 11.8 6.6 31 4.7 0.0 4.6 6 0 0 6 6 5 0 Tetratricopeptide repeat DUF357 PF04010.13 gi|435850248|ref|YP_007311834.1| - 0.27 11.3 2.5 13 6.0 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF357) URO-D PF01208.17 gi|435850249|ref|YP_007311835.1| - 2.3e-72 244.1 0.5 2.6e-72 243.9 0.5 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Desulfoferrodox PF01880.18 gi|435850250|ref|YP_007311836.1| - 9.7e-26 90.2 5.0 1.7e-20 73.4 1.6 2.1 2 0 0 2 2 2 2 Desulfoferrodoxin SoxY PF13501.6 gi|435850250|ref|YP_007311836.1| - 0.052 13.8 0.2 7.5 6.8 0.1 2.4 2 1 0 2 2 2 0 Sulfur oxidation protein SoxY DUF1700 PF08006.11 gi|435850251|ref|YP_007311837.1| - 0.3 10.6 6.9 0.35 10.4 6.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) MMPL PF03176.15 gi|435850251|ref|YP_007311837.1| - 0.33 9.8 3.9 0.37 9.7 3.9 1.1 1 0 0 1 1 1 0 MMPL family FtsX PF02687.21 gi|435850251|ref|YP_007311837.1| - 3.5 8.2 8.8 8.5 6.9 9.1 1.4 1 1 0 1 1 1 0 FtsX-like permease family Virul_fac_BrkB PF03631.15 gi|435850252|ref|YP_007311838.1| - 1.4 8.4 7.7 1.8 8.1 7.7 1.1 1 0 0 1 1 1 0 Virulence factor BrkB AA_permease PF00324.21 gi|435850253|ref|YP_007311839.1| - 7.3e-34 117.2 48.1 9.7e-34 116.8 48.1 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|435850253|ref|YP_007311839.1| - 1.3e-21 76.9 52.6 2e-21 76.4 52.6 1.2 1 0 0 1 1 1 1 Amino acid permease MtmB PF05369.12 gi|435850255|ref|YP_007311841.1| - 2.3e-229 761.7 1.7 2.6e-229 761.5 1.7 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB B12-binding_2 PF02607.17 gi|435850256|ref|YP_007311842.1| - 4e-18 65.6 0.4 8.3e-18 64.6 0.4 1.6 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.19 gi|435850256|ref|YP_007311842.1| - 5.6e-15 55.5 0.8 1.1e-14 54.5 0.8 1.5 1 0 0 1 1 1 1 B12 binding domain DUF5633 PF18656.1 gi|435850256|ref|YP_007311842.1| - 0.68 9.9 5.8 2 8.3 0.2 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5633) DUF1724 PF08350.10 gi|435850257|ref|YP_007311843.1| - 1e-21 76.8 0.2 7.7e-20 70.8 0.1 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF1724) HTH_45 PF14947.6 gi|435850257|ref|YP_007311843.1| - 0.0032 17.4 0.4 0.0069 16.3 0.4 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1724 PF08350.10 gi|435850258|ref|YP_007311844.1| - 3.3e-23 81.6 0.0 7.2e-23 80.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|435850258|ref|YP_007311844.1| - 0.1 12.5 0.0 0.32 10.9 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HisKA_2 PF07568.12 gi|435850259|ref|YP_007311845.1| - 3.2e-30 104.0 2.5 1.9e-29 101.6 1.3 3.0 2 0 0 2 2 2 1 Histidine kinase dCache_1 PF02743.18 gi|435850259|ref|YP_007311845.1| - 1.2e-25 90.7 4.4 1.2e-25 90.7 4.4 2.7 4 0 0 4 4 4 1 Cache domain PAS_3 PF08447.12 gi|435850259|ref|YP_007311845.1| - 3e-18 65.9 0.2 1e-15 57.7 0.2 3.1 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|435850259|ref|YP_007311845.1| - 1.8e-16 60.3 0.3 1.4e-10 41.4 0.0 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|435850259|ref|YP_007311845.1| - 1.9e-11 44.5 0.3 5.5e-11 43.0 0.3 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|435850259|ref|YP_007311845.1| - 6.6e-10 39.2 0.0 4.5e-06 26.9 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|435850259|ref|YP_007311845.1| - 6.7e-08 32.4 0.0 2e-07 30.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|435850259|ref|YP_007311845.1| - 1.2e-07 31.8 0.0 5e-07 29.7 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HAMP PF00672.25 gi|435850259|ref|YP_007311845.1| - 3.3e-07 30.6 0.7 0.32 11.4 0.0 4.5 3 1 1 4 4 4 2 HAMP domain PAS PF00989.25 gi|435850259|ref|YP_007311845.1| - 8.2e-07 29.0 0.1 0.056 13.5 0.2 3.2 3 0 0 3 3 3 2 PAS fold Cache_3-Cache_2 PF17201.4 gi|435850259|ref|YP_007311845.1| - 2.6e-05 23.6 0.0 7.4e-05 22.2 0.0 1.8 1 0 0 1 1 1 1 Cache 3/Cache 2 fusion domain HWE_HK PF07536.14 gi|435850259|ref|YP_007311845.1| - 0.00022 21.9 0.1 0.00062 20.4 0.1 1.8 1 0 0 1 1 1 1 HWE histidine kinase Response_reg PF00072.24 gi|435850260|ref|YP_007311846.1| - 1.5e-21 76.6 0.1 1.7e-21 76.4 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain NAD_binding_7 PF13241.6 gi|435850261|ref|YP_007311847.1| - 3.5e-05 24.2 0.0 8.1e-05 23.0 0.0 1.5 2 0 0 2 2 2 1 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|435850261|ref|YP_007311847.1| - 0.00014 21.8 0.0 0.00023 21.1 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|435850261|ref|YP_007311847.1| - 0.00016 21.1 0.1 0.00034 20.0 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|435850261|ref|YP_007311847.1| - 0.0011 19.1 0.0 0.0018 18.4 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|435850261|ref|YP_007311847.1| - 0.002 17.7 0.0 0.0043 16.6 0.0 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.18 gi|435850261|ref|YP_007311847.1| - 0.0024 18.1 0.0 0.0042 17.3 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain F420_oxidored PF03807.17 gi|435850261|ref|YP_007311847.1| - 0.0045 17.5 0.0 0.0096 16.5 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent adh_short PF00106.25 gi|435850261|ref|YP_007311847.1| - 0.032 13.7 0.0 0.047 13.1 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Shikimate_DH PF01488.20 gi|435850261|ref|YP_007311847.1| - 0.033 14.3 0.0 0.054 13.6 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|435850261|ref|YP_007311847.1| - 0.042 13.5 0.0 0.083 12.5 0.0 1.5 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|435850261|ref|YP_007311847.1| - 0.055 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|435850261|ref|YP_007311847.1| - 0.084 12.2 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|435850261|ref|YP_007311847.1| - 0.11 12.8 0.0 0.21 11.9 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain ATP-grasp_3 PF02655.14 gi|435850262|ref|YP_007311848.1| - 1.4e-09 38.2 0.0 2.4e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|435850262|ref|YP_007311848.1| - 6.3e-09 35.7 0.0 1.5e-08 34.4 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_N PF18130.1 gi|435850262|ref|YP_007311848.1| - 0.00032 21.2 0.3 0.0025 18.3 0.1 2.2 2 0 0 2 2 2 1 ATP-grasp N-terminal domain Dala_Dala_lig_C PF07478.13 gi|435850262|ref|YP_007311848.1| - 0.0031 17.1 0.0 0.0053 16.3 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus GARS_A PF01071.19 gi|435850262|ref|YP_007311848.1| - 0.0079 16.0 0.1 3.2 7.5 0.1 3.2 4 0 0 4 4 4 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Ins134_P3_kin PF05770.11 gi|435850262|ref|YP_007311848.1| - 0.011 15.2 0.0 0.026 14.0 0.0 1.6 1 0 0 1 1 1 0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain GIDA PF01134.22 gi|435850262|ref|YP_007311848.1| - 0.098 11.7 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A Radical_SAM PF04055.21 gi|435850263|ref|YP_007311849.1| - 4.7e-11 43.4 0.1 3.1e-10 40.7 0.1 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|435850263|ref|YP_007311849.1| - 7.4e-06 26.1 0.1 1.5e-05 25.1 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|435850263|ref|YP_007311849.1| - 0.00014 22.1 0.0 0.00025 21.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Spermine_synth PF01564.17 gi|435850263|ref|YP_007311849.1| - 0.0055 16.1 0.0 0.013 14.9 0.0 1.5 1 0 0 1 1 1 1 Spermine/spermidine synthase domain BATS PF06968.13 gi|435850263|ref|YP_007311849.1| - 0.04 14.1 0.0 0.15 12.3 0.0 2.1 1 1 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain His_biosynth PF00977.21 gi|435850263|ref|YP_007311849.1| - 0.21 11.0 0.0 0.58 9.6 0.0 1.7 2 0 0 2 2 2 0 Histidine biosynthesis protein tRNA-synt_2d PF01409.20 gi|435850264|ref|YP_007311850.1| - 7.5e-11 42.0 0.0 1.3e-08 34.7 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|435850264|ref|YP_007311850.1| - 9.1e-09 34.8 0.9 2.6e-07 30.0 0.2 3.1 2 1 1 3 3 3 1 tRNA synthetases class II (D, K and N) tRNA_synthFbeta PF17759.1 gi|435850264|ref|YP_007311850.1| - 1.2e-06 28.1 0.0 2.5e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_His PF13393.6 gi|435850264|ref|YP_007311850.1| - 0.00049 19.5 0.0 0.00083 18.7 0.0 1.3 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|435850264|ref|YP_007311850.1| - 0.00085 19.3 1.6 0.0052 16.8 0.0 2.9 3 1 0 3 3 3 1 tRNA synthetase class II core domain (G, H, P, S and T) Hydant_A_N PF05378.13 gi|435850265|ref|YP_007311851.1| - 1.8e-32 112.5 2.4 1.7e-28 99.5 0.8 3.6 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region Hydantoinase_A PF01968.18 gi|435850265|ref|YP_007311851.1| - 2.8e-31 108.9 0.4 1.8e-29 102.9 0.1 2.9 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|435850265|ref|YP_007311851.1| - 8.7e-08 31.2 0.1 0.006 15.2 0.1 2.2 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.20 gi|435850265|ref|YP_007311851.1| - 0.0018 17.8 1.2 0.086 12.3 0.0 3.0 3 0 0 3 3 3 1 BadF/BadG/BcrA/BcrD ATPase family Sigma54_AID PF00309.20 gi|435850265|ref|YP_007311851.1| - 0.03 14.2 0.6 0.064 13.1 0.6 1.6 1 0 0 1 1 1 0 Sigma-54 factor, Activator interacting domain (AID) ROK PF00480.20 gi|435850265|ref|YP_007311851.1| - 0.13 11.7 0.0 0.29 10.6 0.0 1.5 1 0 0 1 1 1 0 ROK family FtsA PF14450.6 gi|435850265|ref|YP_007311851.1| - 0.16 12.4 0.3 20 5.7 0.0 3.1 3 0 0 3 3 3 0 Cell division protein FtsA Hydantoinase_A PF01968.18 gi|435850266|ref|YP_007311852.1| - 4.8e-33 114.7 1.5 3.6e-32 111.8 0.5 2.6 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|435850266|ref|YP_007311852.1| - 3.4e-31 108.3 3.5 8.2e-28 97.3 0.6 3.3 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|435850266|ref|YP_007311852.1| - 1.2e-08 34.0 0.3 0.0005 18.8 0.0 2.2 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.20 gi|435850266|ref|YP_007311852.1| - 0.003 17.1 0.0 0.3 10.6 0.0 2.3 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family StbA PF06406.11 gi|435850266|ref|YP_007311852.1| - 0.075 12.3 0.0 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 StbA protein FtsA PF14450.6 gi|435850266|ref|YP_007311852.1| - 0.22 12.0 1.5 1.4 9.4 0.2 2.8 2 1 1 3 3 3 0 Cell division protein FtsA DUF1638 PF07796.11 gi|435850267|ref|YP_007311853.1| - 7.2e-35 120.5 0.0 8.9e-35 120.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) DUF3920 PF13058.6 gi|435850267|ref|YP_007311853.1| - 0.019 15.1 0.4 0.83 9.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3920) PAS_3 PF08447.12 gi|435850268|ref|YP_007311854.1| - 1.4e-37 127.8 0.6 1.2e-17 63.9 0.1 3.9 4 0 0 4 4 4 2 PAS fold GAF_2 PF13185.6 gi|435850268|ref|YP_007311854.1| - 2.3e-33 115.4 0.0 1e-19 71.2 0.0 2.6 3 0 0 3 3 3 2 GAF domain PAS PF00989.25 gi|435850268|ref|YP_007311854.1| - 1.5e-20 73.3 0.0 5.2e-05 23.2 0.0 4.4 4 0 0 4 4 4 4 PAS fold PAS_4 PF08448.10 gi|435850268|ref|YP_007311854.1| - 1.5e-19 70.3 0.0 0.00025 21.3 0.0 4.3 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|435850268|ref|YP_007311854.1| - 2.2e-13 50.4 0.2 0.024 14.9 0.0 4.5 4 0 0 4 4 4 4 PAS domain GAF_3 PF13492.6 gi|435850268|ref|YP_007311854.1| - 7.3e-11 42.5 0.0 0.00016 22.0 0.0 2.4 2 0 0 2 2 2 2 GAF domain PAS_8 PF13188.7 gi|435850268|ref|YP_007311854.1| - 1.6e-08 34.4 0.0 0.00039 20.4 0.0 2.9 2 0 0 2 2 2 2 PAS domain GAF PF01590.26 gi|435850268|ref|YP_007311854.1| - 1.3e-05 25.8 0.0 0.016 15.8 0.0 2.9 2 1 0 2 2 2 2 GAF domain MTTB PF06253.11 gi|435850269|ref|YP_007311855.1| - 1.9e-94 316.5 0.1 2.5e-94 316.1 0.1 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) B12-binding PF02310.19 gi|435850270|ref|YP_007311856.1| - 1.1e-21 77.1 1.7 2e-21 76.2 1.7 1.5 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|435850270|ref|YP_007311856.1| - 4.1e-20 72.0 1.4 8.4e-20 71.0 1.0 1.8 2 0 0 2 2 2 1 B12 binding domain Amidinotransf PF02274.17 gi|435850270|ref|YP_007311856.1| - 0.045 12.8 0.1 0.06 12.4 0.1 1.2 1 0 0 1 1 1 0 Amidinotransferase EamA PF00892.20 gi|435850271|ref|YP_007311857.1| - 3.2e-09 37.1 49.3 2.2e-05 24.7 17.4 3.2 2 1 0 2 2 2 2 EamA-like transporter family ATP-synt_Z PF16594.5 gi|435850273|ref|YP_007311859.1| - 0.016 14.7 4.1 0.046 13.2 4.2 1.7 1 1 1 2 2 2 0 Putative AtpZ or ATP-synthase-associated B12-binding PF02310.19 gi|435850274|ref|YP_007311860.1| - 4.2e-26 91.4 0.9 6.1e-26 90.8 0.3 1.5 2 0 0 2 2 2 1 B12 binding domain B12-binding_2 PF02607.17 gi|435850274|ref|YP_007311860.1| - 2.7e-19 69.4 1.1 6.6e-19 68.1 1.1 1.7 1 0 0 1 1 1 1 B12 binding domain Dimeth_Pyl PF09505.10 gi|435850275|ref|YP_007311861.1| - 3.8e-265 879.6 9.5 4.3e-265 879.4 9.5 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) Antimicrobial_7 PF08102.11 gi|435850275|ref|YP_007311861.1| - 0.0072 16.5 0.0 0.016 15.4 0.0 1.6 1 0 0 1 1 1 1 Scorpion antimicrobial peptide B12-binding_2 PF02607.17 gi|435850276|ref|YP_007311862.1| - 4e-18 65.6 0.4 8.3e-18 64.6 0.4 1.6 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.19 gi|435850276|ref|YP_007311862.1| - 5.6e-15 55.5 0.8 1.1e-14 54.5 0.8 1.5 1 0 0 1 1 1 1 B12 binding domain DUF5633 PF18656.1 gi|435850276|ref|YP_007311862.1| - 0.68 9.9 5.8 2 8.3 0.2 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5633) MtmB PF05369.12 gi|435850277|ref|YP_007311863.1| - 1.8e-229 762.0 1.6 2.1e-229 761.9 1.6 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB MtmB PF05369.12 gi|435850278|ref|YP_007311864.1| - 2e-146 488.4 0.0 2.3e-146 488.1 0.0 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB DUF1759 PF03564.15 gi|435850278|ref|YP_007311864.1| - 0.16 11.9 0.2 18 5.3 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1759) URO-D PF01208.17 gi|435850279|ref|YP_007311865.1| - 2.3e-72 244.1 0.5 2.6e-72 243.9 0.5 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Wyosine_form PF08608.12 gi|435850280|ref|YP_007311866.1| - 2.6e-20 72.5 0.0 4.3e-20 71.8 0.0 1.4 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|435850280|ref|YP_007311866.1| - 8.5e-19 68.5 0.1 2.8e-18 66.9 0.1 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Hydrolase PF00702.26 gi|435850280|ref|YP_007311866.1| - 0.09 13.0 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase eRF1_2 PF03464.15 gi|435850281|ref|YP_007311867.1| - 8.7e-40 136.1 0.0 1.5e-39 135.3 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|435850281|ref|YP_007311867.1| - 1.9e-33 115.3 0.0 3.1e-32 111.4 0.0 2.3 2 0 0 2 2 2 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|435850281|ref|YP_007311867.1| - 6.7e-14 52.3 0.0 1.2e-13 51.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|435850281|ref|YP_007311867.1| - 5.9e-13 48.9 0.0 1.7e-12 47.4 0.0 1.8 2 0 0 2 2 2 1 eRF1 domain 1 acVLRF1 PF18859.1 gi|435850281|ref|YP_007311867.1| - 3.7e-12 46.7 0.0 6.5e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family12 PF18856.1 gi|435850281|ref|YP_007311867.1| - 0.026 15.1 0.0 0.066 13.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 12 tRNA-synt_1d PF00750.19 gi|435850282|ref|YP_007311868.1| - 8.7e-36 123.6 0.1 1.2e-35 123.1 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|435850282|ref|YP_007311868.1| - 3e-32 111.3 0.1 1e-31 109.6 0.0 1.9 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|435850282|ref|YP_007311868.1| - 7.9e-11 42.4 0.1 2.3e-10 40.9 0.1 1.9 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|435850282|ref|YP_007311868.1| - 1.3e-05 24.3 0.0 0.084 11.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|435850282|ref|YP_007311868.1| - 2.2e-05 23.4 0.1 0.0077 15.0 0.1 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|435850282|ref|YP_007311868.1| - 0.00075 18.9 0.0 0.0013 18.1 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 gi|435850282|ref|YP_007311868.1| - 0.006 14.9 0.0 0.01 14.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) XRN1_D1 PF18332.1 gi|435850282|ref|YP_007311868.1| - 0.1 12.4 0.0 0.25 11.1 0.0 1.6 1 0 0 1 1 1 0 Exoribonuclease Xrn1 D1 domain ABC_tran PF00005.27 gi|435850283|ref|YP_007311869.1| - 8.2e-27 94.4 0.0 1.3e-26 93.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435850283|ref|YP_007311869.1| - 3.1e-12 46.9 0.0 2.3e-05 24.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|435850283|ref|YP_007311869.1| - 5.1e-05 23.9 0.0 0.0001 22.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|435850283|ref|YP_007311869.1| - 0.00018 22.0 1.0 0.00055 20.5 1.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|435850283|ref|YP_007311869.1| - 0.00088 19.1 0.0 0.026 14.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|435850283|ref|YP_007311869.1| - 0.0012 18.3 0.1 1.4 8.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|435850283|ref|YP_007311869.1| - 0.0021 17.7 0.0 0.0039 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|435850283|ref|YP_007311869.1| - 0.0027 16.4 0.3 1.6 7.3 0.0 2.3 2 1 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|435850283|ref|YP_007311869.1| - 0.0079 15.9 0.0 0.12 12.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|435850283|ref|YP_007311869.1| - 0.027 14.2 0.0 0.057 13.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad17 PF03215.15 gi|435850283|ref|YP_007311869.1| - 0.033 14.1 0.0 0.056 13.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain SRP54 PF00448.22 gi|435850283|ref|YP_007311869.1| - 0.056 13.1 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|435850283|ref|YP_007311869.1| - 0.058 13.1 0.0 0.15 11.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|435850283|ref|YP_007311869.1| - 0.071 13.4 0.1 0.34 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain PrsW-protease PF13367.6 gi|435850284|ref|YP_007311870.1| - 1.5e-06 27.8 12.8 1.5e-06 27.8 12.8 2.0 2 0 0 2 2 2 1 PrsW family intramembrane metalloprotease ABC2_membrane_3 PF12698.7 gi|435850284|ref|YP_007311870.1| - 2.5e-06 26.8 46.5 3.2e-05 23.2 43.8 3.0 1 1 1 2 2 2 1 ABC-2 family transporter protein DUF3377 PF11857.8 gi|435850284|ref|YP_007311870.1| - 5.8 6.9 5.6 1 9.3 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF3377) ABC2_membrane_3 PF12698.7 gi|435850285|ref|YP_007311871.1| - 4.3e-17 62.3 13.2 6.3e-17 61.7 13.2 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|435850285|ref|YP_007311871.1| - 1.9e-08 34.0 10.9 1.9e-08 34.0 10.9 2.5 3 0 0 3 3 3 1 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|435850285|ref|YP_007311871.1| - 2.1e-08 33.8 10.7 3.2e-08 33.2 10.6 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|435850285|ref|YP_007311871.1| - 0.42 10.1 20.2 0.031 13.8 14.5 1.8 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF11 PF01345.18 gi|435850286|ref|YP_007311872.1| - 8.3e-08 32.4 1.9 0.018 15.3 0.0 4.8 4 2 0 4 4 4 2 Domain of unknown function DUF11 TRAP_beta PF05753.14 gi|435850286|ref|YP_007311872.1| - 1.7e-07 30.8 0.2 0.00054 19.4 0.1 3.6 2 1 1 3 3 3 2 Translocon-associated protein beta (TRAPB) BatD PF13584.6 gi|435850286|ref|YP_007311872.1| - 1.1e-05 24.5 0.1 0.014 14.2 0.0 2.8 2 1 0 3 3 3 2 Oxygen tolerance Top6b_C PF18000.1 gi|435850286|ref|YP_007311872.1| - 5.2e-05 23.4 0.6 0.28 11.4 0.1 3.6 2 2 0 2 2 2 2 Type 2 DNA topoisomerase 6 subunit B C-terminal domain DUF4139 PF13598.6 gi|435850286|ref|YP_007311872.1| - 6.7e-05 22.7 0.8 3.6 7.2 0.1 4.0 3 1 1 4 4 4 3 Domain of unknown function (DUF4139) DUF756 PF05506.12 gi|435850286|ref|YP_007311872.1| - 0.00075 20.4 0.2 2.2 9.2 0.0 4.2 3 1 0 3 3 3 1 Domain of unknown function (DUF756) AP3B1_C PF14796.6 gi|435850286|ref|YP_007311872.1| - 0.088 13.1 0.9 0.46 10.7 0.0 2.6 4 0 0 4 4 4 0 Clathrin-adaptor complex-3 beta-1 subunit C-terminal GDE_N_bis PF14742.6 gi|435850286|ref|YP_007311872.1| - 0.097 12.2 0.0 2.5 7.6 0.0 2.7 3 0 0 3 3 3 0 N-terminal domain of (some) glycogen debranching enzymes HicA_toxin PF07927.12 gi|435850288|ref|YP_007311874.1| - 1.9e-19 69.5 0.3 2.2e-19 69.2 0.3 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, PI-TkoII_IV PF18714.1 gi|435850288|ref|YP_007311874.1| - 0.074 12.5 0.0 0.47 9.9 0.0 1.9 1 1 1 2 2 2 0 DNA polymerase II intein Domain IV HicB_lk_antitox PF15919.5 gi|435850289|ref|YP_007311875.1| - 1.8e-12 47.5 0.0 1.9e-12 47.4 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|435850289|ref|YP_007311875.1| - 3.4e-05 23.8 0.0 3.7e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) DUF2254 PF10011.9 gi|435850290|ref|YP_007311876.1| - 6.3e-11 41.7 5.3 8.7e-11 41.3 4.1 1.7 1 1 1 2 2 2 1 Predicted membrane protein (DUF2254) ATP-grasp_5 PF13549.6 gi|435850290|ref|YP_007311876.1| - 0.0002 20.9 0.4 0.00035 20.1 0.4 1.3 1 0 0 1 1 1 1 ATP-grasp domain LMBR1 PF04791.16 gi|435850290|ref|YP_007311876.1| - 0.0018 17.3 3.5 0.0026 16.8 3.5 1.4 1 0 0 1 1 1 1 LMBR1-like membrane protein PhoU PF01895.19 gi|435850290|ref|YP_007311876.1| - 0.056 13.9 4.5 23 5.5 0.0 4.7 2 2 2 4 4 4 0 PhoU domain DUF3382 PF11862.8 gi|435850290|ref|YP_007311876.1| - 0.087 13.1 1.3 0.23 11.8 1.3 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3382) BSP PF04450.12 gi|435850290|ref|YP_007311876.1| - 0.13 12.0 0.6 0.34 10.7 0.1 1.8 2 0 0 2 2 2 0 Peptidase of plants and bacteria Trns_repr_metal PF02583.17 gi|435850290|ref|YP_007311876.1| - 0.61 10.5 3.0 1.5 9.2 0.1 3.2 3 1 1 4 4 4 0 Metal-sensitive transcriptional repressor PT-VENN PF04829.13 gi|435850290|ref|YP_007311876.1| - 2.1 8.5 5.5 23 5.1 0.2 3.5 3 0 0 3 3 3 0 Pre-toxin domain with VENN motif RICH PF05062.12 gi|435850290|ref|YP_007311876.1| - 6.6 7.2 8.7 1.1 9.6 0.5 3.2 3 0 0 3 3 3 0 RICH domain HicB_lk_antitox PF15919.5 gi|435850292|ref|YP_007311878.1| - 9.4e-09 35.4 0.1 1e-08 35.3 0.1 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|435850292|ref|YP_007311878.1| - 3.6e-05 23.7 0.0 3.8e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) HicA_toxin PF07927.12 gi|435850293|ref|YP_007311879.1| - 1.4e-16 60.3 0.0 1.6e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, Fibrillarin PF01269.17 gi|435850294|ref|YP_007311880.1| - 1.5e-89 299.0 0.0 1.8e-89 298.7 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Nop PF01798.18 gi|435850295|ref|YP_007311881.1| - 6.3e-54 182.9 0.0 9e-54 182.4 0.0 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin Transcrip_reg PF01709.20 gi|435850295|ref|YP_007311881.1| - 0.037 13.4 1.8 0.18 11.2 0.1 2.1 2 0 0 2 2 2 0 Transcriptional regulator GHMP_kinases_C PF08544.13 gi|435850296|ref|YP_007311882.1| - 1.9e-09 37.8 0.0 4.1e-09 36.7 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|435850296|ref|YP_007311882.1| - 2e-06 27.9 0.7 4.1e-06 26.9 0.7 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain DUF4032 PF13224.6 gi|435850296|ref|YP_007311882.1| - 0.006 16.5 0.0 0.75 9.6 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4032) DUF2953 PF11167.8 gi|435850297|ref|YP_007311883.1| - 2.2e-05 24.4 0.0 3.9e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2953) CBP_BcsF PF11120.8 gi|435850297|ref|YP_007311883.1| - 9.1 6.5 8.9 18 5.5 8.2 1.8 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsF Spore_YtfJ PF09579.10 gi|435850298|ref|YP_007311884.1| - 2.2e-27 95.0 4.1 3.7e-27 94.3 4.1 1.3 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) Helicase_C_2 PF13307.6 gi|435850299|ref|YP_007311885.1| - 4.6e-29 101.8 0.1 3e-28 99.1 0.0 2.3 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|435850299|ref|YP_007311885.1| - 1.9e-19 69.9 2.0 5.5e-19 68.5 2.0 1.7 1 1 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|435850299|ref|YP_007311885.1| - 2.7e-05 24.2 4.4 0.0041 17.1 0.2 2.7 2 1 0 3 3 3 2 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|435850299|ref|YP_007311885.1| - 3.8e-05 23.5 0.6 0.022 14.5 0.1 3.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase PhoH PF02562.16 gi|435850299|ref|YP_007311885.1| - 0.00086 18.8 0.3 0.031 13.7 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein HBB PF06777.11 gi|435850299|ref|YP_007311885.1| - 0.0011 18.7 0.1 0.0023 17.7 0.1 1.5 1 0 0 1 1 1 1 Helical and beta-bridge domain Zot PF05707.12 gi|435850299|ref|YP_007311885.1| - 0.002 17.8 0.2 1.3 8.6 0.1 2.5 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) AAA_34 PF13872.6 gi|435850299|ref|YP_007311885.1| - 0.0042 16.0 0.0 0.0074 15.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing NTP hydrolase pore-1 DUF2075 PF09848.9 gi|435850299|ref|YP_007311885.1| - 0.026 13.8 0.2 6.3 5.9 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ATPase PF06745.13 gi|435850299|ref|YP_007311885.1| - 0.031 13.6 1.0 0.051 12.9 0.1 1.8 2 0 0 2 2 2 0 KaiC ArsA_ATPase PF02374.15 gi|435850299|ref|YP_007311885.1| - 0.048 12.8 0.6 0.19 10.9 0.0 2.0 2 0 0 2 2 2 0 Anion-transporting ATPase SNF2_N PF00176.23 gi|435850299|ref|YP_007311885.1| - 0.091 11.5 0.1 0.2 10.3 0.1 1.5 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA PF00004.29 gi|435850299|ref|YP_007311885.1| - 0.49 10.8 2.5 18 5.7 0.1 3.4 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) Pilin_N PF07790.11 gi|435850300|ref|YP_007311886.1| - 4.2e-14 53.2 0.3 9.5e-14 52.1 0.1 1.6 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal OrfB_Zn_ribbon PF07282.11 gi|435850301|ref|YP_007311887.1| - 8.6e-21 73.6 0.7 2e-20 72.5 0.7 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|435850301|ref|YP_007311887.1| - 6.9e-12 45.6 0.0 1.4e-11 44.7 0.0 1.5 1 0 0 1 1 1 1 Probable transposase OmpH PF03938.14 gi|435850301|ref|YP_007311887.1| - 0.02 15.2 0.1 0.042 14.2 0.1 1.5 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF4330 PF14221.6 gi|435850302|ref|YP_007311888.1| - 0.057 13.6 0.1 0.091 13.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) ArlS_N PF18719.1 gi|435850303|ref|YP_007311889.1| - 0.03 14.5 0.2 0.06 13.6 0.2 1.6 1 1 0 1 1 1 0 ArlS sensor domain MliC PF09864.9 gi|435850304|ref|YP_007311890.1| - 0.13 12.2 0.1 0.25 11.3 0.1 1.5 1 0 0 1 1 1 0 Membrane-bound lysozyme-inhibitor of c-type lysozyme ChiW_Ig_like PF18683.1 gi|435850305|ref|YP_007311891.1| - 0.11 12.7 0.6 3.3 8.0 0.0 2.2 2 0 0 2 2 2 0 Chitinase W immunoglobulin-like domain Metallophos PF00149.28 gi|435850306|ref|YP_007311892.1| - 3.1e-12 47.4 0.0 6.1e-12 46.5 0.0 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|435850306|ref|YP_007311892.1| - 1.8e-09 38.0 0.0 6.3e-09 36.2 0.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DHDPS PF00701.22 gi|435850306|ref|YP_007311892.1| - 0.01 14.5 0.0 0.02 13.6 0.0 1.3 1 0 0 1 1 1 0 Dihydrodipicolinate synthetase family AGO_N PF18236.1 gi|435850306|ref|YP_007311892.1| - 0.057 13.7 0.9 5 7.4 0.0 2.4 2 0 0 2 2 2 0 Argonaute N domain AAA_23 PF13476.6 gi|435850307|ref|YP_007311893.1| - 5.4e-20 72.8 7.1 5.4e-20 72.8 7.1 5.5 1 1 2 3 3 1 1 AAA domain SMC_N PF02463.19 gi|435850307|ref|YP_007311893.1| - 4.7e-16 58.9 18.4 1.2e-14 54.3 18.4 3.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|435850307|ref|YP_007311893.1| - 1.1e-07 31.9 18.3 1.1e-07 31.9 18.3 3.9 1 1 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 gi|435850307|ref|YP_007311893.1| - 4e-07 30.1 7.7 0.0011 18.8 0.1 3.3 4 1 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|435850307|ref|YP_007311893.1| - 1.3e-06 28.0 0.0 3e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SIS PF01380.22 gi|435850307|ref|YP_007311893.1| - 0.0045 16.8 0.1 0.014 15.2 0.0 1.9 2 0 0 2 2 2 1 SIS domain AAA_27 PF13514.6 gi|435850307|ref|YP_007311893.1| - 0.0074 15.9 0.0 0.0074 15.9 0.0 4.2 3 2 3 6 6 6 1 AAA domain RsgA_GTPase PF03193.16 gi|435850307|ref|YP_007311893.1| - 0.086 12.7 0.1 0.086 12.7 0.1 4.1 5 1 1 6 6 6 0 RsgA GTPase zf-TFIIB PF13453.6 gi|435850307|ref|YP_007311893.1| - 0.16 11.3 0.4 3.8 6.9 0.2 2.7 2 0 0 2 2 2 0 Transcription factor zinc-finger AAA_16 PF13191.6 gi|435850307|ref|YP_007311893.1| - 0.19 12.1 0.0 0.19 12.1 0.0 3.2 3 1 0 3 3 3 0 AAA ATPase domain ATG16 PF08614.11 gi|435850307|ref|YP_007311893.1| - 0.24 11.6 61.2 0.26 11.5 12.4 4.7 1 1 2 4 4 4 0 Autophagy protein 16 (ATG16) MukB PF04310.12 gi|435850307|ref|YP_007311893.1| - 0.24 11.2 0.0 0.24 11.2 0.0 4.8 3 2 3 6 6 6 0 MukB N-terminal Rad50_zn_hook PF04423.14 gi|435850307|ref|YP_007311893.1| - 1 9.2 7.5 1.6 8.6 2.1 4.3 2 1 1 3 3 3 0 Rad50 zinc hook motif AAA_22 PF13401.6 gi|435850307|ref|YP_007311893.1| - 1 9.6 5.2 5.1 7.4 0.1 3.4 2 0 0 2 2 2 0 AAA domain Spc7 PF08317.11 gi|435850307|ref|YP_007311893.1| - 1.8 7.4 81.6 0.043 12.7 16.8 5.2 1 1 4 5 5 5 0 Spc7 kinetochore protein Ino80_Iec3 PF14612.6 gi|435850308|ref|YP_007311894.1| - 0.057 14.1 0.1 0.057 14.1 0.1 2.2 2 0 0 2 2 2 0 IEC3 subunit of the Ino80 complex, chromatin re-modelling LXG PF04740.12 gi|435850308|ref|YP_007311894.1| - 0.15 11.8 2.6 1.8 8.2 2.6 2.0 1 1 0 1 1 1 0 LXG domain of WXG superfamily PKcGMP_CC PF16808.5 gi|435850308|ref|YP_007311894.1| - 0.22 11.4 8.8 1.3 8.9 4.7 3.0 2 1 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Stathmin PF00836.19 gi|435850308|ref|YP_007311894.1| - 0.31 11.0 6.3 0.8 9.7 0.2 3.0 2 1 1 3 3 3 0 Stathmin family DUF2076 PF09849.9 gi|435850308|ref|YP_007311894.1| - 0.42 10.6 0.0 0.42 10.6 0.0 2.0 1 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2076) Pox_VLTF3 PF04947.14 gi|435850308|ref|YP_007311894.1| - 0.45 10.2 3.4 0.7 9.6 3.4 1.2 1 0 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like DUF5446 PF17522.2 gi|435850308|ref|YP_007311894.1| - 0.85 9.8 5.1 2 8.6 5.1 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5446) CCDC-167 PF15188.6 gi|435850308|ref|YP_007311894.1| - 1.2 9.5 6.4 2.7 8.4 6.4 1.6 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 SMC_N PF02463.19 gi|435850309|ref|YP_007311895.1| - 3.4e-73 245.7 0.0 6.7e-73 244.8 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|435850309|ref|YP_007311895.1| - 2.6e-34 118.0 0.0 9e-34 116.3 0.0 2.0 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.6 gi|435850309|ref|YP_007311895.1| - 4.3e-14 53.5 10.7 4.3e-14 53.5 10.7 5.7 2 2 1 3 3 1 1 AAA domain AAA_15 PF13175.6 gi|435850309|ref|YP_007311895.1| - 7.5e-10 39.1 14.9 7.5e-10 39.1 14.9 4.3 2 2 0 2 2 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|435850309|ref|YP_007311895.1| - 1e-09 38.7 10.4 0.00016 21.6 0.0 4.1 3 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|435850309|ref|YP_007311895.1| - 1.8e-07 30.8 0.0 4e-07 29.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Spc7 PF08317.11 gi|435850309|ref|YP_007311895.1| - 1.3e-05 24.3 102.1 0.00015 20.7 11.9 7.9 3 2 3 8 8 8 4 Spc7 kinetochore protein MscS_porin PF12795.7 gi|435850309|ref|YP_007311895.1| - 0.0005 19.7 64.6 0.06 12.9 7.2 4.9 2 2 2 4 4 4 3 Mechanosensitive ion channel porin domain Filament PF00038.21 gi|435850309|ref|YP_007311895.1| - 0.003 17.2 2.8 0.003 17.2 2.8 5.6 2 2 2 5 5 5 1 Intermediate filament protein ADIP PF11559.8 gi|435850309|ref|YP_007311895.1| - 0.0041 17.2 2.4 0.0041 17.2 2.4 7.1 3 2 5 8 8 7 2 Afadin- and alpha -actinin-Binding APG6_N PF17675.1 gi|435850309|ref|YP_007311895.1| - 0.0053 17.3 8.2 0.0053 17.3 8.2 9.7 2 2 8 10 10 9 2 Apg6 coiled-coil region DUF3450 PF11932.8 gi|435850309|ref|YP_007311895.1| - 0.0077 15.6 3.3 0.0077 15.6 3.3 7.9 2 2 6 8 8 8 2 Protein of unknown function (DUF3450) FlxA PF14282.6 gi|435850309|ref|YP_007311895.1| - 0.018 15.0 1.2 0.018 15.0 1.2 7.3 5 1 2 7 7 6 0 FlxA-like protein TolA_bind_tri PF16331.5 gi|435850309|ref|YP_007311895.1| - 0.029 14.4 0.1 0.029 14.4 0.1 9.8 7 2 2 9 9 8 0 TolA binding protein trimerisation FPP PF05911.11 gi|435850309|ref|YP_007311895.1| - 0.074 11.2 77.2 0.48 8.6 26.7 4.9 2 2 3 5 5 5 0 Filament-like plant protein, long coiled-coil AAA_13 PF13166.6 gi|435850309|ref|YP_007311895.1| - 0.32 9.6 72.1 0.0061 15.3 11.5 4.7 2 2 3 5 5 5 0 AAA domain CENP-F_leu_zip PF10473.9 gi|435850309|ref|YP_007311895.1| - 0.47 10.5 105.2 0.17 11.9 10.6 8.1 2 2 3 6 6 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Arg_decarbox_C PF17944.1 gi|435850309|ref|YP_007311895.1| - 0.69 10.5 3.5 2.8 8.6 0.9 3.6 2 0 0 2 2 2 0 Arginine decarboxylase C-terminal helical extension DUF3584 PF12128.8 gi|435850309|ref|YP_007311895.1| - 2.6 5.5 84.9 0.0044 14.6 19.1 4.4 2 2 3 5 5 5 0 Protein of unknown function (DUF3584) ABC_tran PF00005.27 gi|435850309|ref|YP_007311895.1| - 3 8.4 0.0 3 8.4 0.0 5.6 4 2 0 4 4 2 0 ABC transporter DUF2207 PF09972.9 gi|435850309|ref|YP_007311895.1| - 3.8 6.2 8.7 2.8 6.6 5.7 2.3 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) DUF1664 PF07889.12 gi|435850309|ref|YP_007311895.1| - 7.5 6.6 61.2 0.11 12.6 4.0 9.2 2 2 7 11 11 11 0 Protein of unknown function (DUF1664) Fez1 PF06818.15 gi|435850309|ref|YP_007311895.1| - 9.4 6.6 88.7 0.26 11.7 16.2 6.0 2 2 3 5 5 4 0 Fez1 DUF724 PF05266.14 gi|435850309|ref|YP_007311895.1| - 9.5 6.0 79.9 0.032 14.0 4.8 7.1 3 2 5 8 8 8 0 Protein of unknown function (DUF724) SMC_ScpA PF02616.14 gi|435850310|ref|YP_007311896.1| - 6.3e-18 65.6 5.3 1e-15 58.4 5.3 2.1 1 1 0 1 1 1 1 Segregation and condensation protein ScpA Rad21_Rec8 PF04824.16 gi|435850310|ref|YP_007311896.1| - 0.0077 15.5 0.0 0.017 14.4 0.0 1.5 1 0 0 1 1 1 1 Conserved region of Rad21 / Rec8 like protein SMC_ScpB PF04079.16 gi|435850311|ref|YP_007311897.1| - 8.9e-35 119.7 0.0 2.7e-34 118.1 0.0 1.8 2 0 0 2 2 2 1 Segregation and condensation complex subunit ScpB YozD PF14162.6 gi|435850311|ref|YP_007311897.1| - 1.2 9.5 3.8 1.6 9.1 0.3 2.6 2 1 1 3 3 3 0 YozD-like protein TBP PF00352.21 gi|435850312|ref|YP_007311898.1| - 1.4e-55 185.2 0.5 1.1e-26 92.6 0.2 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|435850312|ref|YP_007311898.1| - 7e-09 35.7 0.2 0.0018 18.3 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) FAM25 PF15825.5 gi|435850312|ref|YP_007311898.1| - 0.033 14.5 1.7 0.067 13.5 1.7 1.5 1 0 0 1 1 1 0 FAM25 family NdhS PF11623.8 gi|435850312|ref|YP_007311898.1| - 0.041 13.5 0.0 4.7 6.9 0.0 2.4 2 0 0 2 2 2 0 NAD(P)H dehydrogenase subunit S RTT107_BRCT_5 PF16770.5 gi|435850312|ref|YP_007311898.1| - 0.059 13.3 0.1 0.12 12.3 0.1 1.5 1 0 0 1 1 1 0 Regulator of Ty1 transposition protein 107 BRCT domain DUF218 PF02698.17 gi|435850312|ref|YP_007311898.1| - 0.094 12.7 0.1 9.4 6.3 0.0 2.2 1 1 1 2 2 2 0 DUF218 domain Glycos_transf_2 PF00535.26 gi|435850313|ref|YP_007311899.1| - 8.2e-19 68.0 0.0 1.3e-18 67.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|435850313|ref|YP_007311899.1| - 9.9e-06 25.6 0.0 1.3e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|435850313|ref|YP_007311899.1| - 0.00023 21.6 0.0 0.00044 20.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Bmp PF02608.14 gi|435850313|ref|YP_007311899.1| - 0.069 12.1 0.0 0.16 10.9 0.0 1.6 1 0 0 1 1 1 0 ABC transporter substrate-binding protein PnrA-like BtrH_N PF14399.6 gi|435850313|ref|YP_007311899.1| - 0.14 12.4 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 Butirosin biosynthesis protein H, N-terminal ThiC_Rad_SAM PF01964.18 gi|435850314|ref|YP_007311900.1| - 9.8e-167 555.0 1.5 1.1e-166 554.8 1.5 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Methyltransf_25 PF13649.6 gi|435850315|ref|YP_007311901.1| - 6.1e-20 71.7 0.0 1e-19 71.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435850315|ref|YP_007311901.1| - 2.8e-19 69.6 0.0 4.8e-19 68.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|435850315|ref|YP_007311901.1| - 2e-17 63.4 0.1 2.7e-17 62.9 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|435850315|ref|YP_007311901.1| - 3.1e-16 59.5 0.0 3.6e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|435850315|ref|YP_007311901.1| - 1.5e-10 41.1 0.0 1.8e-10 40.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|435850315|ref|YP_007311901.1| - 1.3e-08 35.5 0.0 2e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|435850315|ref|YP_007311901.1| - 0.00015 21.4 0.0 0.0003 20.4 0.0 1.6 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase TPMT PF05724.11 gi|435850315|ref|YP_007311901.1| - 0.00035 20.3 0.0 0.0014 18.3 0.0 1.8 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) TehB PF03848.14 gi|435850315|ref|YP_007311901.1| - 0.00069 19.1 0.0 0.00085 18.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.19 gi|435850315|ref|YP_007311901.1| - 0.00079 19.2 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|435850315|ref|YP_007311901.1| - 0.0022 17.3 0.0 0.0055 16.0 0.0 1.5 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|435850315|ref|YP_007311901.1| - 0.0065 16.1 0.0 0.0097 15.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW UBM PF14377.6 gi|435850315|ref|YP_007311901.1| - 0.027 13.9 0.3 0.049 13.1 0.3 1.4 1 0 0 1 1 1 0 Ubiquitin binding region RrnaAD PF00398.20 gi|435850315|ref|YP_007311901.1| - 0.033 13.3 0.0 0.042 12.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|435850315|ref|YP_007311901.1| - 0.043 13.4 0.0 0.081 12.5 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain PrmA PF06325.13 gi|435850315|ref|YP_007311901.1| - 0.091 12.1 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) CMD PF02627.20 gi|435850316|ref|YP_007311902.1| - 5.9e-07 29.5 0.0 7.8e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF1294 PF06961.13 gi|435850317|ref|YP_007311903.1| - 1.3e-22 79.7 0.4 2e-22 79.1 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) OSTbeta PF15048.6 gi|435850317|ref|YP_007311903.1| - 0.093 12.9 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Organic solute transporter subunit beta protein ASC PF00858.24 gi|435850317|ref|YP_007311903.1| - 0.25 10.2 0.1 0.27 10.1 0.1 1.1 1 0 0 1 1 1 0 Amiloride-sensitive sodium channel WD40 PF00400.32 gi|435850318|ref|YP_007311904.1| - 8.2e-43 143.6 12.6 1.1e-10 41.9 0.1 7.1 7 0 0 7 7 7 6 WD domain, G-beta repeat ANAPC4_WD40 PF12894.7 gi|435850318|ref|YP_007311904.1| - 5.5e-13 49.0 0.1 0.0017 18.7 0.0 5.2 1 1 4 6 6 6 3 Anaphase-promoting complex subunit 4 WD40 domain WD40_like PF17005.5 gi|435850318|ref|YP_007311904.1| - 4.3e-07 29.6 0.0 2.2e-06 27.2 0.0 1.8 1 1 1 2 2 2 1 WD40-like domain Ge1_WD40 PF16529.5 gi|435850318|ref|YP_007311904.1| - 0.00027 20.0 0.2 0.25 10.3 0.0 3.8 3 1 1 5 5 5 1 WD40 region of Ge1, enhancer of mRNA-decapping protein Nbas_N PF15492.6 gi|435850318|ref|YP_007311904.1| - 0.00063 19.2 0.4 1.9 7.8 0.0 3.8 2 1 2 4 4 4 2 Neuroblastoma-amplified sequence, N terminal PD40 PF07676.12 gi|435850318|ref|YP_007311904.1| - 0.0026 17.6 1.0 24 5.0 0.0 4.9 5 0 0 5 5 5 0 WD40-like Beta Propeller Repeat Nup160 PF11715.8 gi|435850318|ref|YP_007311904.1| - 0.0041 15.8 0.0 1.8 7.1 0.1 3.2 3 1 1 4 4 4 1 Nucleoporin Nup120/160 Nucleoporin_N PF08801.11 gi|435850318|ref|YP_007311904.1| - 0.0094 14.7 0.9 0.41 9.3 0.9 2.8 2 1 0 2 2 2 1 Nup133 N terminal like nos_propeller PF18764.1 gi|435850318|ref|YP_007311904.1| - 0.027 14.4 0.0 1.6 8.7 0.0 2.5 2 0 0 2 2 2 0 Nitrous oxide reductase propeller repeat Cytochrom_D1 PF02239.16 gi|435850318|ref|YP_007311904.1| - 0.051 12.1 0.0 9.3 4.7 0.0 2.8 1 1 1 3 3 3 0 Cytochrome D1 heme domain SelR PF01641.18 gi|435850319|ref|YP_007311905.1| - 8.2e-56 187.3 0.1 9.4e-56 187.1 0.1 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.14 gi|435850319|ref|YP_007311905.1| - 0.0014 18.8 0.0 0.0023 18.1 0.0 1.4 1 0 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly TF_Zn_Ribbon PF08271.12 gi|435850319|ref|YP_007311905.1| - 0.003 17.0 1.4 1.2 8.8 0.2 2.8 2 1 1 3 3 3 2 TFIIB zinc-binding Ribosomal_L37e PF01907.19 gi|435850319|ref|YP_007311905.1| - 0.0052 16.9 1.0 3.5 7.9 0.1 2.3 2 0 0 2 2 2 2 Ribosomal protein L37e zinc_ribbon_2 PF13240.6 gi|435850319|ref|YP_007311905.1| - 0.0053 16.4 0.8 2.3 8.0 0.0 3.2 3 0 0 3 3 3 1 zinc-ribbon domain ADD_ATRX PF17981.1 gi|435850319|ref|YP_007311905.1| - 0.0084 16.0 0.1 2.2 8.2 0.0 2.3 2 0 0 2 2 2 1 Cysteine Rich ADD domain HNH_5 PF14279.6 gi|435850319|ref|YP_007311905.1| - 0.021 14.7 0.3 0.79 9.6 0.0 2.4 2 0 0 2 2 2 0 HNH endonuclease GFA PF04828.14 gi|435850319|ref|YP_007311905.1| - 0.023 15.0 0.2 4.3 7.7 0.0 2.2 2 0 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf_UBZ PF18439.1 gi|435850319|ref|YP_007311905.1| - 0.028 14.0 0.4 4.9 6.8 0.1 2.5 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger HECT_2 PF09814.9 gi|435850319|ref|YP_007311905.1| - 0.028 13.3 0.1 0.22 10.3 0.0 1.9 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding DZR PF12773.7 gi|435850319|ref|YP_007311905.1| - 0.03 14.4 1.1 0.6 10.2 1.0 2.5 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_10 PF10058.9 gi|435850319|ref|YP_007311905.1| - 0.032 14.0 0.8 1.4 8.7 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein GATA PF00320.27 gi|435850319|ref|YP_007311905.1| - 0.065 12.8 0.3 7.1 6.3 0.0 2.6 2 0 0 2 2 2 0 GATA zinc finger DUF678 PF05077.12 gi|435850319|ref|YP_007311905.1| - 0.095 12.8 0.1 11 6.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF678) DUF2318 PF10080.9 gi|435850319|ref|YP_007311905.1| - 0.1 12.7 1.0 12 6.1 0.1 2.2 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) zf-NADH-PPase PF09297.11 gi|435850319|ref|YP_007311905.1| - 0.15 11.7 2.1 7.6 6.3 0.3 2.6 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|435850319|ref|YP_007311905.1| - 0.36 10.3 2.2 14 5.2 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain MarR_2 PF12802.7 gi|435850321|ref|YP_007311907.1| - 7.8e-11 41.7 0.1 1.1e-10 41.2 0.1 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|435850321|ref|YP_007311907.1| - 1e-10 41.3 0.0 1.8e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|435850321|ref|YP_007311907.1| - 2.1e-06 28.1 0.0 3.5e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|435850321|ref|YP_007311907.1| - 0.00015 21.6 0.0 0.00029 20.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|435850321|ref|YP_007311907.1| - 0.00042 20.2 0.0 0.00085 19.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|435850321|ref|YP_007311907.1| - 0.005 16.8 0.0 0.0099 15.8 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|435850321|ref|YP_007311907.1| - 0.005 16.8 0.1 0.0081 16.2 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn helix TrmB PF01978.19 gi|435850321|ref|YP_007311907.1| - 0.0075 16.1 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|435850321|ref|YP_007311907.1| - 0.016 15.1 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit Fe_dep_repress PF01325.19 gi|435850321|ref|YP_007311907.1| - 0.033 14.4 0.0 0.058 13.6 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|435850321|ref|YP_007311907.1| - 0.075 12.7 0.1 0.15 11.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_34 PF13601.6 gi|435850321|ref|YP_007311907.1| - 0.085 13.0 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|435850321|ref|YP_007311907.1| - 0.11 12.0 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Replic_Relax PF13814.6 gi|435850321|ref|YP_007311907.1| - 0.14 12.3 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation Imm70 PF15601.6 gi|435850321|ref|YP_007311907.1| - 0.16 11.5 0.0 1.8 8.1 0.0 2.0 2 0 0 2 2 2 0 Immunity protein 70 MatE PF01554.18 gi|435850322|ref|YP_007311908.1| - 1.9e-57 193.4 39.4 1.7e-32 112.3 11.8 2.5 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|435850322|ref|YP_007311908.1| - 1.2e-09 38.3 19.6 1.2e-09 38.3 19.6 4.7 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain CbiZ PF01955.18 gi|435850323|ref|YP_007311909.1| - 3.9e-61 206.5 0.3 5.1e-61 206.1 0.3 1.2 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase AP_endonuc_2 PF01261.24 gi|435850324|ref|YP_007311910.1| - 9.5e-11 41.5 0.0 5.5e-10 39.0 0.0 1.9 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel HTH_20 PF12840.7 gi|435850325|ref|YP_007311911.1| - 2.2e-08 34.0 0.1 2.2e-08 34.0 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|435850325|ref|YP_007311911.1| - 7.9e-07 28.8 0.3 1.7e-06 27.8 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|435850325|ref|YP_007311911.1| - 0.0047 16.8 0.0 0.0087 16.0 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|435850325|ref|YP_007311911.1| - 0.024 14.5 0.1 0.04 13.8 0.1 1.4 1 0 0 1 1 1 0 MarR family DUF4430 PF14478.6 gi|435850325|ref|YP_007311911.1| - 0.03 14.9 0.4 0.09 13.4 0.4 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4430) Radical_SAM PF04055.21 gi|435850326|ref|YP_007311912.1| - 8.2e-08 32.8 0.1 1.8e-07 31.7 0.1 1.7 1 1 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.7 gi|435850326|ref|YP_007311912.1| - 5.4e-06 26.6 0.0 1.2e-05 25.5 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|435850326|ref|YP_007311912.1| - 1e-05 25.1 0.0 2.4e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif PsbU PF06514.11 gi|435850326|ref|YP_007311912.1| - 0.047 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_2 PF12826.7 gi|435850326|ref|YP_007311912.1| - 0.088 12.9 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|435850326|ref|YP_007311912.1| - 0.11 13.2 0.0 0.26 11.9 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain DUF4130 PF13566.6 gi|435850327|ref|YP_007311913.1| - 1.2e-07 31.8 0.0 1.9e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4130 Rsa3 PF14615.6 gi|435850327|ref|YP_007311913.1| - 0.0078 15.8 0.5 0.025 14.1 0.5 1.9 1 0 0 1 1 1 1 Ribosome-assembly protein 3 SLATT_fungal PF18142.1 gi|435850327|ref|YP_007311913.1| - 0.043 13.8 0.0 0.095 12.7 0.0 1.6 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain Inovirus_Gp2 PF11726.8 gi|435850327|ref|YP_007311913.1| - 0.051 13.5 0.0 0.088 12.7 0.0 1.4 1 0 0 1 1 1 0 Inovirus Gp2 MutS_V PF00488.21 gi|435850328|ref|YP_007311914.1| - 9.2e-09 35.6 0.1 2.4e-08 34.2 0.1 1.7 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.6 gi|435850328|ref|YP_007311914.1| - 3.1e-07 30.9 0.0 3.8e-06 27.4 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|435850328|ref|YP_007311914.1| - 0.00031 20.8 0.0 0.001 19.1 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|435850328|ref|YP_007311914.1| - 0.00032 21.2 0.2 0.31 11.7 0.0 3.8 2 1 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH PF00633.23 gi|435850328|ref|YP_007311914.1| - 0.011 15.6 0.0 0.043 13.7 0.0 2.1 1 0 0 1 1 1 0 Helix-hairpin-helix motif AAA PF00004.29 gi|435850328|ref|YP_007311914.1| - 0.014 15.8 0.4 0.087 13.3 0.1 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.6 gi|435850328|ref|YP_007311914.1| - 0.027 14.3 0.9 7 6.4 0.2 2.5 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system IMS_HHH PF11798.8 gi|435850328|ref|YP_007311914.1| - 0.053 13.9 0.0 0.16 12.3 0.0 1.8 1 0 0 1 1 1 0 IMS family HHH motif IGPD PF00475.18 gi|435850329|ref|YP_007311915.1| - 5.5e-63 211.6 1.7 6.8e-63 211.3 1.7 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.21 gi|435850330|ref|YP_007311916.1| - 1.3e-73 247.2 0.9 1.5e-73 247.0 0.9 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|435850330|ref|YP_007311916.1| - 6e-09 35.5 1.0 3.4e-05 23.2 0.2 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.17 gi|435850330|ref|YP_007311916.1| - 6.6e-09 35.3 0.1 0.00035 19.8 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|435850330|ref|YP_007311916.1| - 7.4e-09 35.4 0.6 1.3e-07 31.4 0.2 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|435850330|ref|YP_007311916.1| - 7.1e-07 28.6 1.7 0.001 18.2 0.2 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|435850330|ref|YP_007311916.1| - 4.1e-06 26.0 0.6 0.0014 17.7 0.2 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.17 gi|435850330|ref|YP_007311916.1| - 1.9e-05 24.1 0.3 0.0001 21.7 0.1 2.0 2 0 0 2 2 2 1 Thiamine monophosphate synthase NanE PF04131.14 gi|435850330|ref|YP_007311916.1| - 0.0001 21.6 0.2 0.069 12.3 0.1 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|435850330|ref|YP_007311916.1| - 0.00065 19.1 1.3 0.53 9.5 0.0 2.1 1 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG Glu_synthase PF01645.17 gi|435850330|ref|YP_007311916.1| - 0.00079 18.7 1.7 0.0095 15.1 0.1 2.3 2 0 0 2 2 2 1 Conserved region in glutamate synthase IGPS PF00218.21 gi|435850330|ref|YP_007311916.1| - 0.0013 17.9 0.0 0.0083 15.3 0.0 2.0 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase DUF561 PF04481.12 gi|435850330|ref|YP_007311916.1| - 0.0015 17.7 0.1 0.0024 17.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF561) PcrB PF01884.17 gi|435850330|ref|YP_007311916.1| - 0.0016 17.9 0.8 0.017 14.6 0.0 2.2 1 1 2 3 3 3 1 PcrB family G3P_antiterm PF04309.12 gi|435850330|ref|YP_007311916.1| - 0.0025 17.2 0.8 0.094 12.1 0.1 2.2 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator Trp_syntA PF00290.20 gi|435850330|ref|YP_007311916.1| - 0.0096 14.8 0.2 0.12 11.2 0.1 2.0 2 0 0 2 2 2 1 Tryptophan synthase alpha chain DNA_pol_lambd_f PF10391.9 gi|435850330|ref|YP_007311916.1| - 0.092 12.6 0.1 14 5.6 0.0 3.2 3 0 0 3 3 3 0 Fingers domain of DNA polymerase lambda HisG PF01634.18 gi|435850331|ref|YP_007311917.1| - 6.5e-53 179.0 0.1 9.5e-53 178.4 0.1 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|435850331|ref|YP_007311917.1| - 3.9e-25 87.8 0.4 9.9e-25 86.5 0.4 1.7 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.11 gi|435850331|ref|YP_007311917.1| - 5.2e-06 26.6 0.1 0.01 15.8 0.0 2.4 1 1 1 2 2 2 2 NMT1/THI5 like UBA PF00627.31 gi|435850331|ref|YP_007311917.1| - 0.13 12.2 0.1 0.37 10.7 0.1 1.8 1 0 0 1 1 1 0 UBA/TS-N domain AdoMet_Synthase PF01941.19 gi|435850332|ref|YP_007311918.1| - 3.5e-177 589.1 2.7 3.9e-177 589.0 2.7 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) Disaggr_repeat PF06848.11 gi|435850333|ref|YP_007311919.1| - 6.5e-92 306.1 4.7 1.5e-91 305.0 4.7 1.6 1 0 0 1 1 1 1 Disaggregatase related repeat Disaggr_assoc PF08480.10 gi|435850333|ref|YP_007311919.1| - 1.3e-28 100.2 18.0 3.4e-28 98.8 16.8 2.4 2 0 0 2 2 2 1 Disaggregatase related Beta_helix PF13229.6 gi|435850333|ref|YP_007311919.1| - 6.7e-15 55.3 51.6 4.8e-11 42.8 17.5 2.9 2 1 1 3 3 3 2 Right handed beta helix region TGFb_propeptide PF00688.18 gi|435850333|ref|YP_007311919.1| - 0.0049 16.7 0.0 2 8.1 0.0 2.2 2 0 0 2 2 2 2 TGF-beta propeptide LVIVD PF08309.11 gi|435850334|ref|YP_007311920.1| - 1.2e-165 536.6 87.1 5.6e-14 51.2 0.1 14.4 14 0 0 14 14 14 14 LVIVD repeat Beta_propel PF09826.9 gi|435850334|ref|YP_007311920.1| - 1.3e-14 54.0 0.9 0.0033 16.4 0.1 6.3 1 1 4 6 6 6 5 Beta propeller domain VCBS PF13517.6 gi|435850334|ref|YP_007311920.1| - 0.00022 21.7 20.9 0.00061 20.3 7.7 7.9 8 2 2 10 10 10 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella CPSF_A PF03178.15 gi|435850334|ref|YP_007311920.1| - 0.00085 18.7 0.2 1 8.6 0.0 4.1 3 2 2 5 5 5 1 CPSF A subunit region PQQ_3 PF13570.6 gi|435850334|ref|YP_007311920.1| - 1.7 9.3 94.2 0.7 10.5 0.3 14.3 15 0 0 15 15 15 0 PQQ-like domain tRNA-synt_1e PF01406.19 gi|435850335|ref|YP_007311921.1| - 2.9e-78 263.3 0.0 4.4e-78 262.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|435850335|ref|YP_007311921.1| - 2.4e-13 49.6 0.1 9.2e-08 31.2 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|435850335|ref|YP_007311921.1| - 1.3e-06 27.0 0.0 4.3e-05 22.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|435850335|ref|YP_007311921.1| - 0.025 13.5 0.0 0.21 10.4 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (K) MMR_HSR1_C PF08438.10 gi|435850336|ref|YP_007311922.1| - 2e-32 112.1 0.2 4e-32 111.1 0.1 1.6 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|435850336|ref|YP_007311922.1| - 2.2e-20 72.9 0.0 2.6e-19 69.4 0.0 2.4 2 1 1 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|435850336|ref|YP_007311922.1| - 9.2e-10 38.4 0.1 5.5e-09 35.9 0.0 2.2 3 0 0 3 3 3 1 TGS domain FeoB_N PF02421.18 gi|435850336|ref|YP_007311922.1| - 3.4e-07 29.9 0.7 2.7e-06 27.0 0.0 2.5 3 0 0 3 3 3 1 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|435850336|ref|YP_007311922.1| - 0.0086 16.1 0.1 0.017 15.1 0.1 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain YchF-GTPase_C PF06071.13 gi|435850336|ref|YP_007311922.1| - 0.043 14.0 0.0 0.13 12.4 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF933) Prenyltransf PF01255.19 gi|435850337|ref|YP_007311923.1| - 7.7e-32 110.6 0.0 7e-29 101.0 0.0 2.0 1 1 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Acetyltransf_1 PF00583.25 gi|435850338|ref|YP_007311924.1| - 2.2e-18 66.6 0.0 2.8e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|435850338|ref|YP_007311924.1| - 8.8e-14 51.5 0.1 1e-13 51.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|435850338|ref|YP_007311924.1| - 5.3e-13 49.2 0.1 7.6e-13 48.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|435850338|ref|YP_007311924.1| - 1.9e-08 34.6 0.1 3.1e-08 33.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|435850338|ref|YP_007311924.1| - 0.00044 20.3 0.0 0.0051 16.9 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|435850338|ref|YP_007311924.1| - 0.00045 20.1 0.0 0.00065 19.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_18 PF18014.1 gi|435850338|ref|YP_007311924.1| - 0.011 15.6 0.0 0.029 14.2 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|435850338|ref|YP_007311924.1| - 0.015 16.0 0.0 0.017 15.8 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|435850338|ref|YP_007311924.1| - 0.051 13.7 0.0 0.069 13.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|435850338|ref|YP_007311924.1| - 0.084 13.0 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Ribosomal_S4e PF00900.20 gi|435850339|ref|YP_007311925.1| - 0.0063 16.4 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 Ribosomal family S4e DUF1421 PF07223.11 gi|435850339|ref|YP_007311925.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 UBA-like domain (DUF1421) MRNIP PF15749.5 gi|435850339|ref|YP_007311925.1| - 0.15 12.8 3.3 0.2 12.4 3.3 1.4 1 1 0 1 1 1 0 MRN-interacting protein Lar_restr_allev PF14354.6 gi|435850339|ref|YP_007311925.1| - 0.15 12.4 0.5 0.38 11.2 0.5 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf_UBZ PF18439.1 gi|435850339|ref|YP_007311925.1| - 0.16 11.6 0.9 0.87 9.2 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger eIF-5_eIF-2B PF01873.17 gi|435850339|ref|YP_007311925.1| - 0.26 11.1 3.1 0.84 9.5 1.4 2.4 3 0 0 3 3 3 0 Domain found in IF2B/IF5 Ribosomal_S27e PF01667.17 gi|435850339|ref|YP_007311925.1| - 0.29 10.9 3.1 0.66 9.7 3.1 1.6 1 0 0 1 1 1 0 Ribosomal protein S27 DUF1451 PF07295.11 gi|435850339|ref|YP_007311925.1| - 0.56 10.2 3.2 1.9 8.5 2.1 2.2 2 1 0 2 2 2 0 Zinc-ribbon containing domain AAA PF00004.29 gi|435850340|ref|YP_007311926.1| - 2.9e-36 124.8 0.1 1.1e-35 123.0 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|435850340|ref|YP_007311926.1| - 3.8e-09 36.2 0.0 9.7e-09 34.9 0.0 1.6 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|435850340|ref|YP_007311926.1| - 1.5e-06 28.3 0.8 1e-05 25.6 0.1 2.7 3 1 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|435850340|ref|YP_007311926.1| - 8.9e-05 22.9 0.2 0.041 14.3 0.0 2.9 2 1 1 3 3 2 1 AAA ATPase domain AAA_18 PF13238.6 gi|435850340|ref|YP_007311926.1| - 9.3e-05 23.0 0.0 0.00033 21.2 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.6 gi|435850340|ref|YP_007311926.1| - 0.00025 21.2 0.0 0.00064 19.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|435850340|ref|YP_007311926.1| - 0.00033 19.9 0.0 0.0012 18.1 0.0 1.8 1 1 0 2 2 2 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|435850340|ref|YP_007311926.1| - 0.00079 19.7 0.4 0.08 13.2 0.0 2.7 2 1 1 3 3 2 1 AAA domain AAA_2 PF07724.14 gi|435850340|ref|YP_007311926.1| - 0.00084 19.5 0.0 0.0019 18.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|435850340|ref|YP_007311926.1| - 0.0015 17.8 0.0 0.0029 16.9 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain RuvB_N PF05496.12 gi|435850340|ref|YP_007311926.1| - 0.0019 18.0 0.0 0.0033 17.2 0.0 1.5 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|435850340|ref|YP_007311926.1| - 0.002 18.4 0.0 0.0061 16.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|435850340|ref|YP_007311926.1| - 0.0042 16.5 0.0 0.012 15.0 0.0 1.8 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.6 gi|435850340|ref|YP_007311926.1| - 0.0045 17.4 0.2 0.36 11.2 0.0 2.6 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|435850340|ref|YP_007311926.1| - 0.0061 16.3 0.0 0.014 15.2 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_7 PF12775.7 gi|435850340|ref|YP_007311926.1| - 0.012 15.2 0.0 0.027 14.0 0.0 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|435850340|ref|YP_007311926.1| - 0.013 15.3 0.0 0.026 14.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_11 PF13086.6 gi|435850340|ref|YP_007311926.1| - 0.013 15.3 0.0 0.036 13.8 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|435850340|ref|YP_007311926.1| - 0.017 14.8 0.0 0.03 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain SKI PF01202.22 gi|435850340|ref|YP_007311926.1| - 0.026 14.6 0.0 0.058 13.5 0.0 1.6 1 0 0 1 1 1 0 Shikimate kinase Cytidylate_kin PF02224.18 gi|435850340|ref|YP_007311926.1| - 0.028 14.2 0.1 0.081 12.7 0.0 1.8 2 0 0 2 2 1 0 Cytidylate kinase AAA_25 PF13481.6 gi|435850340|ref|YP_007311926.1| - 0.039 13.5 0.1 1.3 8.6 0.0 2.3 1 1 1 2 2 2 0 AAA domain CPT PF07931.12 gi|435850340|ref|YP_007311926.1| - 0.059 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein TniB PF05621.11 gi|435850340|ref|YP_007311926.1| - 0.095 12.1 0.1 14 5.1 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein AAA_14 PF13173.6 gi|435850340|ref|YP_007311926.1| - 0.11 12.6 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|435850340|ref|YP_007311926.1| - 0.18 11.5 0.2 0.79 9.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|435850340|ref|YP_007311926.1| - 0.2 12.1 0.0 0.38 11.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.6 gi|435850340|ref|YP_007311926.1| - 0.32 11.3 1.5 1.3 9.4 1.5 2.2 1 1 0 1 1 1 0 AAA domain Lactamase_B_2 PF12706.7 gi|435850341|ref|YP_007311927.1| - 1.4e-27 96.6 0.9 1.8e-27 96.2 0.9 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|435850341|ref|YP_007311927.1| - 1.5e-16 61.0 1.2 2.3e-16 60.4 1.2 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|435850341|ref|YP_007311927.1| - 5.8e-05 23.0 1.4 0.00018 21.5 1.4 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain LapA_dom PF06305.11 gi|435850342|ref|YP_007311928.1| - 0.045 13.6 0.8 0.083 12.7 0.1 1.7 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain RGI_lyase PF18370.1 gi|435850342|ref|YP_007311928.1| - 0.57 10.5 2.2 0.95 9.8 0.1 2.3 3 0 0 3 3 3 0 Rhamnogalacturonan I lyases beta-sheet domain ABC2_membrane PF01061.24 gi|435850343|ref|YP_007311929.1| - 2.8e-20 72.7 20.0 2.8e-20 72.7 20.0 2.0 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|435850343|ref|YP_007311929.1| - 3.6e-06 26.3 31.4 5e-06 25.9 31.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|435850344|ref|YP_007311930.1| - 5.4e-34 117.7 0.0 8.8e-34 117.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435850344|ref|YP_007311930.1| - 3.4e-13 50.1 0.2 6.6e-09 36.0 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|435850344|ref|YP_007311930.1| - 0.00054 19.8 0.0 0.69 9.6 0.0 2.2 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|435850344|ref|YP_007311930.1| - 0.0016 17.9 0.0 0.063 12.7 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|435850344|ref|YP_007311930.1| - 0.0071 16.9 0.4 0.016 15.7 0.2 1.6 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.6 gi|435850344|ref|YP_007311930.1| - 0.015 16.0 0.0 0.037 14.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|435850344|ref|YP_007311930.1| - 0.052 13.3 0.0 0.086 12.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|435850344|ref|YP_007311930.1| - 0.084 12.6 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Fasciclin PF02469.22 gi|435850345|ref|YP_007311931.1| - 2.1e-26 92.7 0.0 2.6e-26 92.3 0.0 1.0 1 0 0 1 1 1 1 Fasciclin domain NPR PF07391.11 gi|435850345|ref|YP_007311931.1| - 0.41 11.2 7.8 0.8 10.3 7.8 1.5 1 0 0 1 1 1 0 NPR nonapeptide repeat (2 copies) DHBP_synthase PF00926.19 gi|435850346|ref|YP_007311932.1| - 1.4e-58 197.6 0.2 1.7e-58 197.3 0.2 1.1 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.16 gi|435850347|ref|YP_007311933.1| - 1.8e-48 163.6 0.0 2.6e-48 163.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_Crp_2 PF13545.6 gi|435850347|ref|YP_007311933.1| - 0.0013 18.6 0.0 0.0025 17.8 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|435850347|ref|YP_007311933.1| - 0.02 14.8 0.1 0.041 13.8 0.1 1.5 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.7 gi|435850347|ref|YP_007311933.1| - 0.035 14.0 0.0 0.059 13.3 0.0 1.4 1 0 0 1 1 1 0 MarR family MazE_antitoxin PF04014.18 gi|435850347|ref|YP_007311933.1| - 0.049 13.6 0.3 0.15 12.1 0.3 1.8 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin DUF104 PF01954.16 gi|435850347|ref|YP_007311933.1| - 0.069 13.6 2.5 0.44 11.0 1.1 2.5 2 0 0 2 2 2 0 Protein of unknown function DUF104 Pro_isomerase PF00160.21 gi|435850348|ref|YP_007311934.1| - 1.8e-48 164.8 0.3 2e-48 164.6 0.3 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Pilin_N PF07790.11 gi|435850351|ref|YP_007311937.1| - 7e-05 23.7 1.4 0.00014 22.7 1.2 1.7 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal DUF4840 PF16128.5 gi|435850351|ref|YP_007311937.1| - 0.16 12.0 1.8 0.35 10.9 1.8 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4840) Fer4 PF00037.27 gi|435850355|ref|YP_007311941.1| - 1e-15 56.8 18.6 4.5e-08 32.6 4.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435850355|ref|YP_007311941.1| - 2.8e-11 43.4 10.3 3.8e-11 43.0 10.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435850355|ref|YP_007311941.1| - 2.9e-11 42.9 18.5 3.2e-06 27.0 5.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435850355|ref|YP_007311941.1| - 3.7e-11 43.4 11.6 6e-11 42.8 11.6 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435850355|ref|YP_007311941.1| - 1.5e-10 41.9 10.6 4.1e-05 24.4 2.4 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|435850355|ref|YP_007311941.1| - 2.2e-10 40.5 12.7 2.5e-10 40.3 12.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435850355|ref|YP_007311941.1| - 5.5e-10 39.2 11.7 1e-09 38.4 11.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435850355|ref|YP_007311941.1| - 2.1e-09 37.2 12.5 0.00022 21.5 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|435850355|ref|YP_007311941.1| - 2.5e-09 36.7 16.7 5.4e-05 23.0 4.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|435850355|ref|YP_007311941.1| - 4.5e-06 27.0 13.0 0.006 17.0 2.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435850355|ref|YP_007311941.1| - 5.5e-06 26.8 12.2 0.0074 16.8 1.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|435850355|ref|YP_007311941.1| - 2.8e-05 24.3 14.2 0.0004 20.6 2.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435850355|ref|YP_007311941.1| - 2.9e-05 24.7 18.7 0.0044 17.9 5.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|435850355|ref|YP_007311941.1| - 0.00011 23.0 12.5 0.012 16.5 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|435850355|ref|YP_007311941.1| - 0.0002 21.8 15.3 0.028 15.0 4.3 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|435850355|ref|YP_007311941.1| - 0.17 12.6 16.5 90 3.9 16.5 2.5 1 1 0 1 1 1 0 4Fe-4S single cluster domain Semialdhyde_dhC PF02774.18 gi|435850356|ref|YP_007311942.1| - 3.6e-39 134.7 0.0 6.8e-39 133.8 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|435850356|ref|YP_007311942.1| - 1.4e-34 119.1 0.1 2.6e-34 118.2 0.1 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|435850356|ref|YP_007311942.1| - 0.00087 20.1 0.0 0.0018 19.1 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DXP_reductoisom PF02670.16 gi|435850356|ref|YP_007311942.1| - 0.0081 16.9 0.0 0.02 15.6 0.0 1.8 1 1 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase NAD_binding_10 PF13460.6 gi|435850356|ref|YP_007311942.1| - 0.018 14.9 0.1 0.03 14.2 0.1 1.4 1 0 0 1 1 1 0 NAD(P)H-binding DapB_N PF01113.20 gi|435850356|ref|YP_007311942.1| - 0.036 14.2 0.0 0.065 13.4 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.16 gi|435850356|ref|YP_007311942.1| - 0.041 14.5 0.0 0.072 13.7 0.0 1.3 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Phage_tail_APC PF16778.5 gi|435850356|ref|YP_007311942.1| - 0.094 12.6 0.2 0.29 11.0 0.1 1.8 2 0 0 2 2 2 0 Phage tail assembly chaperone protein tRNA_anti-like PF12869.7 gi|435850357|ref|YP_007311943.1| - 0.03 13.9 1.6 0.057 13.0 0.6 1.9 2 1 0 2 2 2 0 tRNA_anti-like AA_kinase PF00696.28 gi|435850358|ref|YP_007311944.1| - 6.3e-31 107.8 1.4 1e-30 107.2 1.4 1.3 1 1 0 1 1 1 1 Amino acid kinase family SKI PF01202.22 gi|435850358|ref|YP_007311944.1| - 0.0028 17.8 0.1 0.0084 16.2 0.0 1.9 2 0 0 2 2 2 1 Shikimate kinase AlaDh_PNT_C PF01262.21 gi|435850358|ref|YP_007311944.1| - 0.075 12.3 0.1 0.075 12.3 0.1 2.3 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain MoCF_biosynth PF00994.24 gi|435850358|ref|YP_007311944.1| - 0.093 12.4 0.4 1.2 8.8 0.0 2.2 1 1 0 2 2 2 0 Probable molybdopterin binding domain Glyco_hydro_2 PF00703.21 gi|435850359|ref|YP_007311945.1| - 0.00019 22.1 0.1 0.062 14.0 0.0 2.7 3 0 0 3 3 3 2 Glycosyl hydrolases family 2 Wzt_C PF14524.6 gi|435850359|ref|YP_007311945.1| - 0.0029 17.6 0.1 0.045 13.8 0.0 2.3 2 0 0 2 2 2 1 Wzt C-terminal domain Y_Y_Y PF07495.13 gi|435850359|ref|YP_007311945.1| - 0.0037 17.2 0.0 0.0094 15.9 0.0 1.7 1 0 0 1 1 1 1 Y_Y_Y domain TcfC PF16967.5 gi|435850359|ref|YP_007311945.1| - 0.0052 16.2 0.2 0.061 12.8 0.0 2.5 2 0 0 2 2 2 1 E-set like domain Alph_Pro_TM PF09608.10 gi|435850359|ref|YP_007311945.1| - 0.069 13.0 0.2 0.32 10.8 0.0 2.1 3 0 0 3 3 3 0 Putative transmembrane protein (Alph_Pro_TM) DUF4469 PF14734.6 gi|435850359|ref|YP_007311945.1| - 0.13 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4469) with IG-like fold MacB_PCD PF12704.7 gi|435850360|ref|YP_007311946.1| - 3.2e-21 76.6 0.6 3.2e-21 76.6 0.6 2.2 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|435850360|ref|YP_007311946.1| - 1.9e-14 53.9 17.4 2e-14 53.8 7.9 3.2 3 0 0 3 3 3 1 FtsX-like permease family EI24 PF07264.11 gi|435850360|ref|YP_007311946.1| - 0.086 13.1 3.0 0.063 13.5 0.7 2.2 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) HRG PF16954.5 gi|435850360|ref|YP_007311946.1| - 0.5 10.8 0.1 0.5 10.8 0.1 2.9 4 0 0 4 4 4 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene DUF2207 PF09972.9 gi|435850360|ref|YP_007311946.1| - 3.9 6.1 7.2 22 3.7 5.8 2.3 2 1 0 2 2 2 0 Predicted membrane protein (DUF2207) ABC_tran PF00005.27 gi|435850361|ref|YP_007311947.1| - 1.2e-33 116.5 0.0 1.9e-33 115.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|435850361|ref|YP_007311947.1| - 1.2e-08 34.6 0.1 5.1e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|435850361|ref|YP_007311947.1| - 5e-05 22.9 0.1 9e-05 22.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|435850361|ref|YP_007311947.1| - 5.3e-05 23.2 0.2 0.2 11.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|435850361|ref|YP_007311947.1| - 0.00034 21.0 0.4 0.0011 19.4 0.4 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|435850361|ref|YP_007311947.1| - 0.0012 19.0 0.5 0.0086 16.2 0.5 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|435850361|ref|YP_007311947.1| - 0.0054 16.7 0.1 0.011 15.7 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|435850361|ref|YP_007311947.1| - 0.0077 16.8 0.1 0.02 15.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|435850361|ref|YP_007311947.1| - 0.012 15.0 0.3 5.1 6.4 0.0 2.5 3 0 0 3 3 3 0 KaiC AAA_30 PF13604.6 gi|435850361|ref|YP_007311947.1| - 0.016 14.9 0.2 0.043 13.5 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|435850361|ref|YP_007311947.1| - 0.017 15.4 0.7 0.065 13.5 0.2 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|435850361|ref|YP_007311947.1| - 0.034 13.7 0.0 0.09 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|435850361|ref|YP_007311947.1| - 0.056 13.2 0.2 0.32 10.7 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|435850361|ref|YP_007311947.1| - 0.057 14.0 1.1 0.47 11.0 0.2 2.3 1 1 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|435850361|ref|YP_007311947.1| - 0.064 13.0 0.5 1.4 8.6 0.3 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NB-ARC PF00931.22 gi|435850361|ref|YP_007311947.1| - 0.071 12.3 0.7 0.37 9.9 0.1 1.9 2 0 0 2 2 2 0 NB-ARC domain SbcCD_C PF13558.6 gi|435850361|ref|YP_007311947.1| - 0.073 13.3 0.0 2 8.7 0.0 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 gi|435850361|ref|YP_007311947.1| - 0.11 12.3 0.1 0.21 11.3 0.0 1.5 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 gi|435850361|ref|YP_007311947.1| - 0.15 11.7 0.0 0.17 11.5 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|435850361|ref|YP_007311947.1| - 0.3 11.2 1.1 1 9.5 0.1 2.2 2 1 0 2 2 2 0 50S ribosome-binding GTPase DUF2605 PF10792.9 gi|435850362|ref|YP_007311948.1| - 0.00018 21.4 2.1 0.00023 21.0 2.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2605) BRE1 PF08647.11 gi|435850362|ref|YP_007311948.1| - 0.0094 16.0 14.4 0.013 15.6 14.2 1.4 1 1 0 1 1 1 1 BRE1 E3 ubiquitin ligase DUF4080 PF13311.6 gi|435850362|ref|YP_007311948.1| - 0.036 14.3 3.1 0.041 14.1 3.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4080) Terminase_4 PF05119.12 gi|435850362|ref|YP_007311948.1| - 0.037 14.5 1.5 0.051 14.0 1.5 1.2 1 0 0 1 1 1 0 Phage terminase, small subunit Syntaxin PF00804.25 gi|435850362|ref|YP_007311948.1| - 0.062 13.0 8.3 0.58 9.8 0.2 2.4 1 1 0 2 2 2 0 Syntaxin DUF4646 PF15496.6 gi|435850362|ref|YP_007311948.1| - 0.073 13.7 0.1 0.079 13.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4646) Atg14 PF10186.9 gi|435850362|ref|YP_007311948.1| - 0.079 12.0 7.7 0.087 11.9 7.7 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Bul1_C PF04426.12 gi|435850362|ref|YP_007311948.1| - 0.12 11.7 5.6 0.16 11.4 5.6 1.2 1 0 0 1 1 1 0 Bul1 C terminus Arg_decarbox_C PF17944.1 gi|435850362|ref|YP_007311948.1| - 0.14 12.7 0.7 0.14 12.7 0.7 2.0 2 1 0 2 2 2 0 Arginine decarboxylase C-terminal helical extension CorA PF01544.18 gi|435850362|ref|YP_007311948.1| - 0.15 11.3 2.3 0.17 11.2 2.3 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein CENP-F_leu_zip PF10473.9 gi|435850362|ref|YP_007311948.1| - 0.24 11.4 14.2 0.34 10.9 8.3 2.0 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TMPIT PF07851.13 gi|435850362|ref|YP_007311948.1| - 0.32 10.2 8.5 0.35 10.1 8.5 1.1 1 0 0 1 1 1 0 TMPIT-like protein Thg1C PF14413.6 gi|435850362|ref|YP_007311948.1| - 0.35 11.0 6.9 0.12 12.6 3.9 1.6 1 1 1 2 2 2 0 Thg1 C terminal domain SOGA PF11365.8 gi|435850362|ref|YP_007311948.1| - 0.41 11.8 9.8 0.15 13.2 7.3 1.5 1 1 1 2 2 2 0 Protein SOGA DUF3510 PF12022.8 gi|435850362|ref|YP_007311948.1| - 0.99 9.8 8.9 3.9 7.9 8.9 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF3510) DUF2203 PF09969.9 gi|435850362|ref|YP_007311948.1| - 1.9 9.2 6.4 1.7 9.4 4.3 1.7 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) B12-binding_2 PF02607.17 gi|435850363|ref|YP_007311949.1| - 5.5e-16 58.8 2.0 9.1e-16 58.1 0.6 2.0 2 0 0 2 2 2 1 B12 binding domain Iso_dh PF00180.20 gi|435850364|ref|YP_007311950.1| - 1.1e-95 320.8 0.0 1.2e-95 320.6 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.19 gi|435850365|ref|YP_007311951.1| - 1.5e-18 67.4 0.0 2.3e-18 66.8 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|435850365|ref|YP_007311951.1| - 0.0012 18.5 0.0 0.028 14.1 0.0 2.2 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus TIP49 PF06068.13 gi|435850365|ref|YP_007311951.1| - 0.072 12.3 0.0 0.091 11.9 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain DUF87 PF01935.17 gi|435850366|ref|YP_007311952.1| - 1.6e-07 31.6 0.0 3.6e-07 30.5 0.0 1.7 1 1 0 1 1 1 1 Helicase HerA, central domain Zot PF05707.12 gi|435850366|ref|YP_007311952.1| - 0.00027 20.6 0.0 0.00071 19.3 0.0 1.7 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_10 PF12846.7 gi|435850366|ref|YP_007311952.1| - 0.00049 19.1 0.0 0.18 10.7 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA PF00004.29 gi|435850366|ref|YP_007311952.1| - 0.00059 20.3 0.0 0.077 13.4 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|435850366|ref|YP_007311952.1| - 0.0021 18.3 0.0 0.069 13.4 0.0 2.4 2 1 0 2 2 2 1 AAA domain DUF853 PF05872.12 gi|435850366|ref|YP_007311952.1| - 0.0024 16.6 0.0 0.012 14.3 0.0 1.9 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) Microtub_bd PF16796.5 gi|435850366|ref|YP_007311952.1| - 0.056 13.4 0.1 0.27 11.2 0.0 1.9 1 1 1 2 2 2 0 Microtubule binding FtsK_SpoIIIE PF01580.18 gi|435850366|ref|YP_007311952.1| - 0.08 12.3 0.6 3.6 6.9 0.0 2.5 3 0 0 3 3 3 0 FtsK/SpoIIIE family Bile_Hydr_Trans PF04775.14 gi|435850366|ref|YP_007311952.1| - 0.13 12.3 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Acyl-CoA thioester hydrolase/BAAT N-terminal region DUF1297 PF06973.12 gi|435850367|ref|YP_007311953.1| - 8.3e-54 182.0 0.0 1.1e-53 181.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|435850367|ref|YP_007311953.1| - 2.7e-46 156.5 0.0 4.9e-46 155.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.14 gi|435850367|ref|YP_007311953.1| - 0.0012 19.0 0.0 0.0024 17.9 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|435850367|ref|YP_007311953.1| - 0.0072 15.8 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain HTH_20 PF12840.7 gi|435850368|ref|YP_007311954.1| - 6.9e-10 38.9 0.0 1.4e-09 37.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|435850368|ref|YP_007311954.1| - 8.3e-05 22.1 0.1 0.019 14.5 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|435850368|ref|YP_007311954.1| - 0.00021 21.1 0.1 0.00083 19.2 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|435850368|ref|YP_007311954.1| - 0.00033 20.5 0.0 0.00081 19.2 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|435850368|ref|YP_007311954.1| - 0.0021 17.8 0.0 0.13 12.1 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain DUF742 PF05331.11 gi|435850368|ref|YP_007311954.1| - 0.012 15.4 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) MarR_2 PF12802.7 gi|435850368|ref|YP_007311954.1| - 0.03 14.2 0.0 0.39 10.6 0.0 2.4 3 0 0 3 3 3 0 MarR family HTH_27 PF13463.6 gi|435850368|ref|YP_007311954.1| - 0.039 14.4 0.1 0.081 13.4 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain RP-C PF03428.13 gi|435850368|ref|YP_007311954.1| - 0.083 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain PseudoU_synth_1 PF01416.20 gi|435850369|ref|YP_007311955.1| - 8e-29 100.3 0.0 2.7e-22 79.3 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase DUF45 PF01863.17 gi|435850370|ref|YP_007311956.1| - 1.5e-34 119.9 0.4 8.9e-31 107.5 0.1 2.0 1 1 1 2 2 2 2 Protein of unknown function DUF45 SprT-like PF10263.9 gi|435850370|ref|YP_007311956.1| - 0.00078 19.3 0.0 0.0018 18.1 0.0 1.6 1 0 0 1 1 1 1 SprT-like family TPR_1 PF00515.28 gi|435850371|ref|YP_007311957.1| - 4.3e-128 412.5 61.0 8.9e-11 41.1 0.0 14.0 14 0 0 14 14 14 14 Tetratricopeptide repeat TPR_2 PF07719.17 gi|435850371|ref|YP_007311957.1| - 3.2e-103 329.7 56.8 1.3e-08 34.3 0.0 14.0 14 0 0 14 14 14 14 Tetratricopeptide repeat TPR_11 PF13414.6 gi|435850371|ref|YP_007311957.1| - 1.9e-94 309.1 72.5 1.3e-10 40.7 0.4 14.0 1 1 13 14 14 14 13 TPR repeat TPR_8 PF13181.6 gi|435850371|ref|YP_007311957.1| - 4e-90 288.7 58.1 1.7e-07 30.9 0.1 14.0 14 0 0 14 14 14 13 Tetratricopeptide repeat TPR_17 PF13431.6 gi|435850371|ref|YP_007311957.1| - 1.3e-79 257.0 42.1 2.2e-06 27.7 0.3 13.1 12 1 1 13 13 13 13 Tetratricopeptide repeat TPR_16 PF13432.6 gi|435850371|ref|YP_007311957.1| - 1.1e-76 253.1 23.9 2.4e-10 40.9 0.3 8.9 2 1 8 11 11 11 11 Tetratricopeptide repeat TPR_14 PF13428.6 gi|435850371|ref|YP_007311957.1| - 1.9e-59 193.2 24.6 8.4e-06 26.2 0.1 13.9 1 1 13 14 14 14 12 Tetratricopeptide repeat TPR_19 PF14559.6 gi|435850371|ref|YP_007311957.1| - 1.6e-49 166.3 34.9 6.9e-08 32.9 1.4 8.1 3 1 6 10 10 10 10 Tetratricopeptide repeat TPR_12 PF13424.6 gi|435850371|ref|YP_007311957.1| - 5.5e-44 148.3 34.9 3.3e-06 27.3 0.9 9.4 5 3 3 8 8 8 8 Tetratricopeptide repeat TPR_9 PF13371.6 gi|435850371|ref|YP_007311957.1| - 1.3e-37 127.8 5.5 3.2e-06 27.2 0.0 8.4 4 2 3 9 9 9 7 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|435850371|ref|YP_007311957.1| - 1.3e-32 111.8 20.8 9.2e-08 32.2 0.0 6.4 2 2 4 7 7 7 7 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|435850371|ref|YP_007311957.1| - 1.2e-31 107.2 36.9 0.12 13.1 0.1 14.0 14 0 0 14 14 14 8 Tetratricopeptide repeat TPR_7 PF13176.6 gi|435850371|ref|YP_007311957.1| - 1.2e-22 78.2 25.7 0.0083 16.1 0.0 12.3 12 1 1 13 13 13 5 Tetratricopeptide repeat TPR_10 PF13374.6 gi|435850371|ref|YP_007311957.1| - 5.9e-20 70.5 40.6 0.028 14.3 0.2 12.6 13 0 0 13 13 12 6 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|435850371|ref|YP_007311957.1| - 2.7e-18 65.8 18.8 0.0077 16.3 0.0 9.2 9 0 0 9 9 8 3 Fis1 C-terminal tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|435850371|ref|YP_007311957.1| - 3.4e-18 65.8 16.9 7.7e-06 25.9 2.2 5.9 1 1 4 6 6 5 5 Putative TPR-like repeat NARP1 PF12569.8 gi|435850371|ref|YP_007311957.1| - 2.3e-17 63.1 23.6 9e-05 21.6 0.2 6.9 1 1 5 7 7 7 5 NMDA receptor-regulated protein 1 BTAD PF03704.17 gi|435850371|ref|YP_007311957.1| - 3.4e-16 60.0 15.0 0.001 19.6 0.6 6.2 1 1 6 7 7 7 5 Bacterial transcriptional activator domain DUF3856 PF12968.7 gi|435850371|ref|YP_007311957.1| - 3.7e-13 49.8 23.3 0.95 9.5 0.1 10.4 1 1 10 11 11 11 4 Domain of Unknown Function (DUF3856) Alkyl_sulf_dimr PF14863.6 gi|435850371|ref|YP_007311957.1| - 6.2e-11 42.9 11.8 0.05 14.1 0.5 6.3 4 4 2 6 6 6 4 Alkyl sulfatase dimerisation MIT PF04212.18 gi|435850371|ref|YP_007311957.1| - 1.4e-08 34.6 42.7 0.76 9.9 0.1 12.0 8 3 3 11 11 11 2 MIT (microtubule interacting and transport) domain TPR_3 PF07720.12 gi|435850371|ref|YP_007311957.1| - 3.9e-08 33.1 30.4 0.12 12.4 0.7 10.6 12 0 0 12 12 12 2 Tetratricopeptide repeat DUF627 PF04781.12 gi|435850371|ref|YP_007311957.1| - 2.7e-06 27.3 0.4 3.3 7.8 0.0 5.5 6 0 0 6 6 6 1 Protein of unknown function (DUF627) TPR_15 PF13429.6 gi|435850371|ref|YP_007311957.1| - 2.9e-06 26.7 21.6 0.043 13.0 3.0 5.6 1 1 2 5 5 5 2 Tetratricopeptide repeat TPR_21 PF09976.9 gi|435850371|ref|YP_007311957.1| - 2.9e-06 27.1 32.8 0.28 10.8 0.2 8.0 3 2 3 8 8 8 3 Tetratricopeptide repeat-like domain TPR_20 PF14561.6 gi|435850371|ref|YP_007311957.1| - 5.9e-06 26.5 15.1 0.086 13.2 0.4 6.9 3 1 7 10 10 10 2 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|435850371|ref|YP_007311957.1| - 0.00026 21.0 19.9 5.8 7.1 0.3 10.2 6 3 4 10 10 10 0 Anaphase-promoting complex subunit 5 HrpB1_HrpK PF09613.10 gi|435850371|ref|YP_007311957.1| - 0.00052 19.6 0.0 11 5.7 0.0 4.9 2 1 1 5 5 5 0 Bacterial type III secretion protein (HrpB1_HrpK) ChAPs PF09295.10 gi|435850371|ref|YP_007311957.1| - 0.00059 18.9 6.6 0.35 9.8 0.3 3.9 1 1 3 5 5 5 2 ChAPs (Chs5p-Arf1p-binding proteins) Rota_NSP3 PF01665.16 gi|435850371|ref|YP_007311957.1| - 0.00059 19.1 8.0 2.5 7.1 0.1 5.9 1 1 5 7 7 7 1 Rotavirus non-structural protein NSP3 TruB_N PF01509.18 gi|435850371|ref|YP_007311957.1| - 0.0019 18.6 2.4 4.5 7.6 0.1 3.4 3 0 0 3 3 3 0 TruB family pseudouridylate synthase (N terminal domain) DUF5113 PF17140.4 gi|435850371|ref|YP_007311957.1| - 0.0031 17.3 25.5 10 5.9 0.1 9.1 4 3 6 11 11 11 0 Domain of unknown function (DUF5113) DUF4094 PF13334.6 gi|435850371|ref|YP_007311957.1| - 0.0045 17.4 0.1 16 6.0 0.0 5.0 6 2 1 7 7 4 0 Domain of unknown function (DUF4094) HTH_Bact PF18768.1 gi|435850371|ref|YP_007311957.1| - 0.0096 15.5 26.0 4.2 7.0 0.0 9.7 11 0 0 11 11 11 0 Helix-turn-helix bacterial domain PPR PF01535.20 gi|435850371|ref|YP_007311957.1| - 0.011 15.9 11.1 7.8 7.0 0.1 8.2 10 0 0 10 10 8 0 PPR repeat TPR_4 PF07721.14 gi|435850371|ref|YP_007311957.1| - 0.014 16.0 0.1 18 6.3 0.3 4.4 4 0 0 4 4 3 0 Tetratricopeptide repeat TPR_5 PF12688.7 gi|435850371|ref|YP_007311957.1| - 0.017 15.4 6.0 17 5.7 0.2 5.7 4 3 1 6 6 6 0 Tetratrico peptide repeat FAT PF02259.23 gi|435850371|ref|YP_007311957.1| - 0.033 13.4 28.5 5.3 6.1 0.8 6.9 1 1 3 4 4 4 0 FAT domain DUF1510 PF07423.11 gi|435850371|ref|YP_007311957.1| - 0.053 13.7 23.0 4.2 7.6 0.1 9.3 4 3 8 13 13 13 0 Domain of unknown function (DUF1510) DUF4301 PF14134.6 gi|435850371|ref|YP_007311957.1| - 0.061 12.1 0.4 0.71 8.6 0.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4301) Sda PF08970.10 gi|435850371|ref|YP_007311957.1| - 0.064 13.0 18.2 36 4.2 0.0 8.2 9 0 0 9 9 7 0 Sporulation inhibitor A TetR_C_15 PF17918.1 gi|435850371|ref|YP_007311957.1| - 0.14 12.9 0.0 13 6.6 0.0 3.6 4 0 0 4 4 3 0 Tetracyclin repressor-like, C-terminal domain MAS20 PF02064.15 gi|435850371|ref|YP_007311957.1| - 0.26 11.4 3.1 13 5.9 0.0 4.8 6 0 0 6 6 5 0 MAS20 protein import receptor Gln_deamidase_2 PF18626.1 gi|435850371|ref|YP_007311957.1| - 0.55 10.5 5.7 1.9 8.8 0.1 3.9 4 2 2 6 6 4 0 Glutaminase SHNi-TPR PF10516.9 gi|435850371|ref|YP_007311957.1| - 1.5 8.4 17.4 21 4.7 0.4 6.8 8 0 0 8 8 8 0 SHNi-TPR Coatomer_E PF04733.14 gi|435850371|ref|YP_007311957.1| - 2 7.7 8.6 18 4.6 0.3 4.4 2 1 2 5 5 5 0 Coatomer epsilon subunit PPR_1 PF12854.7 gi|435850371|ref|YP_007311957.1| - 2.8 7.7 7.1 7.8 6.3 0.1 4.9 6 0 0 6 6 4 0 PPR repeat RPN7 PF10602.9 gi|435850371|ref|YP_007311957.1| - 5.7 6.6 19.3 0.47 10.1 0.5 6.5 3 2 4 7 7 7 0 26S proteasome subunit RPN7 UPF0020 PF01170.18 gi|435850372|ref|YP_007311958.1| - 1.8e-27 96.3 0.0 1.2e-26 93.6 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|435850372|ref|YP_007311958.1| - 3e-10 40.3 0.2 5.1e-10 39.6 0.2 1.3 1 0 0 1 1 1 1 THUMP domain N6_N4_Mtase PF01555.18 gi|435850372|ref|YP_007311958.1| - 3e-06 27.1 0.0 0.051 13.3 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_11 PF08241.12 gi|435850372|ref|YP_007311958.1| - 3.7e-05 24.3 0.0 0.00013 22.5 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.16 gi|435850372|ref|YP_007311958.1| - 4.6e-05 22.8 0.0 8.1e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_25 PF13649.6 gi|435850372|ref|YP_007311958.1| - 8.2e-05 23.2 0.0 0.00041 21.0 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|435850372|ref|YP_007311958.1| - 0.00072 19.2 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|435850372|ref|YP_007311958.1| - 0.0098 15.5 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase AviRa PF11599.8 gi|435850372|ref|YP_007311958.1| - 0.025 14.1 0.0 0.86 9.0 0.0 2.2 1 1 1 2 2 2 0 RRNA methyltransferase AviRa YIEGIA PF14045.6 gi|435850372|ref|YP_007311958.1| - 0.1 11.4 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 YIEGIA protein MTS PF05175.14 gi|435850372|ref|YP_007311958.1| - 0.13 11.8 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain PAPS_reduct PF01507.19 gi|435850373|ref|YP_007311959.1| - 7.3e-45 153.1 0.0 1.3e-44 152.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.20 gi|435850373|ref|YP_007311959.1| - 5.3e-20 71.2 0.3 1.6e-19 69.7 0.3 1.9 1 0 0 1 1 1 1 PUA domain Fer4_9 PF13187.6 gi|435850373|ref|YP_007311959.1| - 1.2e-06 28.5 8.4 1.2e-06 28.5 8.4 3.1 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435850373|ref|YP_007311959.1| - 1.5e-05 25.5 12.1 1.5e-05 25.5 12.1 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435850373|ref|YP_007311959.1| - 3.8e-05 24.1 8.8 0.011 16.3 0.1 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|435850373|ref|YP_007311959.1| - 4.4e-05 23.1 25.0 0.0013 18.5 6.6 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|435850373|ref|YP_007311959.1| - 6.8e-05 22.9 11.4 6.8e-05 22.9 11.4 2.7 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435850373|ref|YP_007311959.1| - 0.00034 20.7 13.0 0.00034 20.7 13.0 2.9 3 1 0 3 3 2 1 4Fe-4S dicluster domain UPF0113 PF03657.13 gi|435850373|ref|YP_007311959.1| - 0.00097 19.4 0.1 0.0035 17.6 0.0 1.9 2 0 0 2 2 2 1 UPF0113 PUA domain Fer4_2 PF12797.7 gi|435850373|ref|YP_007311959.1| - 0.0053 16.8 2.9 0.0053 16.8 2.9 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|435850373|ref|YP_007311959.1| - 0.0092 16.2 6.9 0.032 14.4 6.9 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435850373|ref|YP_007311959.1| - 0.018 16.0 17.7 0.14 13.1 1.4 3.1 3 0 0 3 3 2 0 4Fe-4S double cluster binding domain Mut7-C PF01927.16 gi|435850373|ref|YP_007311959.1| - 0.19 11.8 3.7 0.12 12.5 1.1 2.0 2 0 0 2 2 2 0 Mut7-C RNAse domain Fer4_6 PF12837.7 gi|435850373|ref|YP_007311959.1| - 0.33 11.1 19.9 0.031 14.3 4.3 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|435850373|ref|YP_007311959.1| - 0.42 11.1 20.6 0.13 12.7 2.0 3.9 5 0 0 5 5 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|435850373|ref|YP_007311959.1| - 6.4 7.4 12.7 5.7 7.6 3.5 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|435850373|ref|YP_007311959.1| - 7.3 7.5 17.9 1.5 9.7 0.5 3.5 4 0 0 4 4 3 0 4Fe-4S dicluster domain AICARFT_IMPCHas PF01808.18 gi|435850374|ref|YP_007311960.1| - 9.8e-97 324.0 0.0 1.2e-96 323.6 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.22 gi|435850374|ref|YP_007311960.1| - 5e-28 97.1 0.0 9.4e-28 96.3 0.0 1.5 1 0 0 1 1 1 1 MGS-like domain MgsA_C PF12002.8 gi|435850374|ref|YP_007311960.1| - 0.17 11.8 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 MgsA AAA+ ATPase C terminal DUF1724 PF08350.10 gi|435850375|ref|YP_007311961.1| - 3.1e-22 78.5 0.4 9.6e-22 76.9 0.4 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) UbiA PF01040.18 gi|435850376|ref|YP_007311962.1| - 1.2e-15 57.6 8.7 1.8e-15 56.9 8.7 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family iPGM_N PF06415.13 gi|435850377|ref|YP_007311963.1| - 2.1e-82 275.8 0.0 3.1e-82 275.2 0.0 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|435850377|ref|YP_007311963.1| - 2.5e-77 259.6 0.0 2.9e-77 259.4 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|435850377|ref|YP_007311963.1| - 0.0011 18.6 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|435850377|ref|YP_007311963.1| - 0.0031 17.6 1.3 0.0077 16.3 0.5 1.9 2 0 0 2 2 2 1 PglZ domain XPG_I PF00867.18 gi|435850378|ref|YP_007311964.1| - 4e-25 88.0 0.0 1e-24 86.6 0.0 1.7 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|435850378|ref|YP_007311964.1| - 1.2e-21 77.0 0.0 3e-21 75.8 0.0 1.6 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|435850378|ref|YP_007311964.1| - 0.00018 22.0 0.1 0.00044 20.8 0.1 1.7 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|435850378|ref|YP_007311964.1| - 0.00088 19.8 0.1 0.013 16.1 0.1 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|435850378|ref|YP_007311964.1| - 0.04 14.0 0.0 0.18 11.9 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif TRPM_tetra PF16519.5 gi|435850380|ref|YP_007311966.1| - 0.00079 19.5 1.5 0.26 11.4 0.3 2.2 1 1 1 2 2 2 2 Tetramerisation domain of TRPM Oxidored_q2 PF00420.24 gi|435850380|ref|YP_007311966.1| - 0.0031 17.1 0.6 0.0045 16.6 0.6 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Baculo_PEP_C PF04513.12 gi|435850380|ref|YP_007311966.1| - 0.008 16.2 3.1 0.011 15.8 3.1 1.1 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.11 gi|435850380|ref|YP_007311966.1| - 0.011 16.0 1.4 0.016 15.4 1.4 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF3139 PF11337.8 gi|435850380|ref|YP_007311966.1| - 0.038 14.6 0.9 0.27 11.9 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) DUF5446 PF17522.2 gi|435850380|ref|YP_007311966.1| - 0.071 13.3 2.7 0.1 12.7 2.7 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5446) Chorismate_synt PF01264.21 gi|435850380|ref|YP_007311966.1| - 0.084 11.6 0.5 0.11 11.2 0.5 1.1 1 0 0 1 1 1 0 Chorismate synthase BROMI PF14961.6 gi|435850381|ref|YP_007311967.1| - 0.018 12.5 0.0 0.024 12.1 0.0 1.1 1 0 0 1 1 1 0 Broad-minded protein NusB PF01029.18 gi|435850381|ref|YP_007311967.1| - 0.082 13.1 0.2 0.14 12.4 0.2 1.4 1 0 0 1 1 1 0 NusB family Peptidase_M24 PF00557.24 gi|435850383|ref|YP_007311969.1| - 6.3e-50 169.8 0.1 1.1e-49 169.0 0.1 1.4 1 0 0 1 1 1 1 Metallopeptidase family M24 CdiI_4 PF18624.1 gi|435850383|ref|YP_007311969.1| - 0.11 13.0 0.0 0.47 10.9 0.0 2.0 2 0 0 2 2 2 0 CDI immunity protein Peptidase_M24 PF00557.24 gi|435850384|ref|YP_007311970.1| - 2.5e-40 138.4 0.1 3e-40 138.2 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Dmd PF17587.2 gi|435850385|ref|YP_007311971.1| - 0.057 13.8 0.4 0.12 12.8 0.4 1.5 1 0 0 1 1 1 0 Discriminator of mRNA degradation DUF1805 PF08827.11 gi|435850386|ref|YP_007311972.1| - 7.8e-26 90.2 0.3 1.1e-25 89.7 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) SPP PF06550.11 gi|435850387|ref|YP_007311973.1| - 3.1e-108 361.6 26.8 3.6e-108 361.3 26.8 1.0 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease CMD PF02627.20 gi|435850388|ref|YP_007311974.1| - 7.9e-14 51.5 0.0 1.1e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family CAP_N PF01213.19 gi|435850388|ref|YP_007311974.1| - 0.19 11.2 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal MCR_C PF04609.12 gi|435850389|ref|YP_007311975.1| - 2.3e-125 417.1 0.1 3e-125 416.7 0.1 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MtrA PF04208.14 gi|435850389|ref|YP_007311975.1| - 0.032 13.9 0.1 0.3 10.7 0.1 2.1 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit A DUF2113 PF09886.9 gi|435850390|ref|YP_007311976.1| - 1.2e-64 217.1 2.4 1.4e-64 216.9 2.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) Corona_S2 PF01601.16 gi|435850390|ref|YP_007311976.1| - 0.00064 18.4 0.1 0.00073 18.2 0.1 1.1 1 0 0 1 1 1 1 Coronavirus S2 glycoprotein BcrAD_BadFG PF01869.20 gi|435850391|ref|YP_007311977.1| - 1.8e-56 191.6 4.7 2.4e-56 191.2 4.7 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|435850391|ref|YP_007311977.1| - 0.0018 18.7 1.8 0.0049 17.3 0.5 2.3 2 1 0 2 2 2 1 Cell division protein FtsA DUF4934 PF16288.5 gi|435850391|ref|YP_007311977.1| - 0.087 12.7 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4934) Hydant_A_N PF05378.13 gi|435850391|ref|YP_007311977.1| - 0.16 11.6 2.8 0.2 11.3 0.7 2.1 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase N-terminal region DUF2112 PF09885.9 gi|435850392|ref|YP_007311978.1| - 6.2e-68 227.3 0.2 7.1e-68 227.1 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.9 gi|435850393|ref|YP_007311979.1| - 2.6e-42 142.7 0.0 3.5e-42 142.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) Pro_isomerase PF00160.21 gi|435850394|ref|YP_007311980.1| - 5.1e-05 23.6 0.1 2.6 8.3 0.0 4.6 4 1 0 5 5 5 2 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABC_tran PF00005.27 gi|435850395|ref|YP_007311981.1| - 6.6e-50 169.2 0.0 3.2e-24 86.0 0.0 2.3 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|435850395|ref|YP_007311981.1| - 1.9e-07 30.7 1.6 0.022 14.2 0.1 3.2 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|435850395|ref|YP_007311981.1| - 9.9e-05 22.3 0.2 0.49 10.3 0.0 2.6 2 0 0 2 2 2 2 RsgA GTPase PRK PF00485.18 gi|435850395|ref|YP_007311981.1| - 0.00011 22.1 0.1 0.34 10.6 0.0 2.4 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_30 PF13604.6 gi|435850395|ref|YP_007311981.1| - 0.001 18.8 0.3 0.37 10.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_21 PF13304.6 gi|435850395|ref|YP_007311981.1| - 0.0018 18.2 0.0 3.4 7.4 0.0 3.6 3 1 1 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_18 PF13238.6 gi|435850395|ref|YP_007311981.1| - 0.0027 18.2 0.4 0.89 10.1 0.0 3.0 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.25 gi|435850395|ref|YP_007311981.1| - 0.0064 16.2 0.1 0.017 14.8 0.0 1.7 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.6 gi|435850395|ref|YP_007311981.1| - 0.0099 15.6 0.6 3.3 7.5 0.1 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|435850395|ref|YP_007311981.1| - 0.016 14.4 1.0 0.94 8.6 0.1 2.5 2 0 0 2 2 2 0 NB-ARC domain MobB PF03205.14 gi|435850395|ref|YP_007311981.1| - 0.02 14.8 0.2 3.9 7.4 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.6 gi|435850395|ref|YP_007311981.1| - 0.032 14.8 1.2 5.6 7.4 0.1 2.5 3 0 0 3 3 2 0 AAA domain AAA_16 PF13191.6 gi|435850395|ref|YP_007311981.1| - 0.032 14.6 0.1 2.6 8.4 0.1 2.6 2 1 0 2 2 2 0 AAA ATPase domain Anti-TRAP PF15777.5 gi|435850395|ref|YP_007311981.1| - 0.033 14.2 1.5 0.033 14.2 1.5 2.1 3 0 0 3 3 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein AAA_33 PF13671.6 gi|435850395|ref|YP_007311981.1| - 0.033 14.3 0.0 2.8 8.1 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|435850395|ref|YP_007311981.1| - 0.037 14.3 0.2 3.9 7.8 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_13 PF13166.6 gi|435850395|ref|YP_007311981.1| - 0.075 11.7 0.0 4.3 5.9 0.0 2.7 3 0 0 3 3 3 0 AAA domain Zeta_toxin PF06414.12 gi|435850395|ref|YP_007311981.1| - 0.081 12.2 0.0 1.8 7.8 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin IstB_IS21 PF01695.17 gi|435850395|ref|YP_007311981.1| - 0.087 12.5 0.8 33 4.1 0.1 3.2 3 0 0 3 3 3 0 IstB-like ATP binding protein mTERF PF02536.14 gi|435850395|ref|YP_007311981.1| - 0.089 11.7 0.1 3.1 6.6 0.0 2.3 2 0 0 2 2 2 0 mTERF AAA_28 PF13521.6 gi|435850395|ref|YP_007311981.1| - 0.12 12.6 0.9 9.3 6.5 0.0 3.5 3 1 1 4 4 4 0 AAA domain MMR_HSR1 PF01926.23 gi|435850395|ref|YP_007311981.1| - 0.18 11.9 1.6 4.4 7.4 0.1 3.5 4 1 0 4 4 4 0 50S ribosome-binding GTPase DUF87 PF01935.17 gi|435850395|ref|YP_007311981.1| - 0.19 11.8 1.6 4.7 7.2 0.1 2.8 2 0 0 2 2 2 0 Helicase HerA, central domain ATPase PF06745.13 gi|435850395|ref|YP_007311981.1| - 0.39 10.0 4.0 5.9 6.2 0.0 3.5 4 0 0 4 4 4 0 KaiC Hydrolase PF00702.26 gi|435850396|ref|YP_007311982.1| - 2.5e-14 54.1 0.0 1.3e-13 51.7 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|435850396|ref|YP_007311982.1| - 8.9e-07 28.9 0.3 0.00084 19.2 0.1 2.5 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|435850396|ref|YP_007311982.1| - 0.0015 18.6 0.0 0.085 13.0 0.0 2.6 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|435850396|ref|YP_007311982.1| - 0.0031 17.5 0.0 0.0062 16.6 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|435850396|ref|YP_007311982.1| - 0.033 14.6 0.0 0.87 10.0 0.0 2.7 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase Peptidase_M10 PF00413.24 gi|435850397|ref|YP_007311983.1| - 7.4e-14 51.9 0.0 1.1e-13 51.3 0.0 1.3 1 0 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.6 gi|435850397|ref|YP_007311983.1| - 0.0011 19.5 0.1 0.0016 19.0 0.1 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|435850397|ref|YP_007311983.1| - 0.0022 17.0 0.1 0.0029 16.6 0.1 1.1 1 0 0 1 1 1 1 Peptidase M66 Metallopep PF12044.8 gi|435850397|ref|YP_007311983.1| - 0.007 15.0 0.0 0.0091 14.6 0.0 1.1 1 0 0 1 1 1 1 Putative peptidase family Astacin PF01400.24 gi|435850397|ref|YP_007311983.1| - 0.0096 15.5 0.0 0.02 14.5 0.0 1.4 2 0 0 2 2 2 1 Astacin (Peptidase family M12A) Peptidase_M54 PF07998.11 gi|435850397|ref|YP_007311983.1| - 0.052 13.5 0.0 0.082 12.9 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M54 Peptidase_M57 PF12388.8 gi|435850397|ref|YP_007311983.1| - 0.054 13.1 0.0 0.071 12.7 0.0 1.3 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase DUF4953 PF16313.5 gi|435850397|ref|YP_007311983.1| - 0.076 12.2 0.1 0.11 11.7 0.1 1.2 1 0 0 1 1 1 0 Met-zincin Reprolysin_5 PF13688.6 gi|435850397|ref|YP_007311983.1| - 0.079 13.1 0.0 0.094 12.9 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 PgaD PF13994.6 gi|435850397|ref|YP_007311983.1| - 0.097 12.7 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 PgaD-like protein TMEM252 PF15664.5 gi|435850397|ref|YP_007311983.1| - 0.11 12.2 0.2 1.6 8.5 0.0 2.4 3 0 0 3 3 3 0 Transmembrane protein 252 family DNA_binding_1 PF01035.20 gi|435850398|ref|YP_007311984.1| - 4.6e-29 100.4 0.0 5.7e-29 100.1 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain AFOR_C PF01314.18 gi|435850399|ref|YP_007311985.1| - 1.7e-95 320.3 0.0 5.5e-95 318.6 0.0 1.7 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|435850399|ref|YP_007311985.1| - 4.4e-73 245.4 0.3 6.2e-73 244.9 0.3 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain eIF-5a PF01287.20 gi|435850400|ref|YP_007311986.1| - 1.8e-09 37.5 1.4 2e-09 37.4 0.2 1.6 2 0 0 2 2 2 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|435850400|ref|YP_007311986.1| - 4e-05 23.6 0.0 7.8e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain DUF1947 PF09183.10 gi|435850400|ref|YP_007311986.1| - 0.049 13.9 0.6 0.12 12.6 0.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1947) DUF3324 PF11797.8 gi|435850400|ref|YP_007311986.1| - 0.058 13.4 0.0 0.37 10.7 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function C-terminal (DUF3324) Arginase PF00491.21 gi|435850401|ref|YP_007311987.1| - 3.6e-76 256.3 0.0 4e-76 256.2 0.0 1.0 1 0 0 1 1 1 1 Arginase family zinc_ribbon_4 PF13717.6 gi|435850402|ref|YP_007311988.1| - 0.077 12.9 0.7 0.13 12.2 0.7 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|435850402|ref|YP_007311988.1| - 0.17 11.6 1.8 0.39 10.4 1.8 1.5 1 1 0 1 1 1 0 Ribosomal protein S27 zf-RING_7 PF02591.15 gi|435850402|ref|YP_007311988.1| - 0.3 11.3 1.7 3.6 7.9 0.0 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain PCMT PF01135.19 gi|435850403|ref|YP_007311989.1| - 2.1e-71 240.0 0.0 2.6e-71 239.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|435850403|ref|YP_007311989.1| - 2.2e-08 34.0 0.0 3e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|435850403|ref|YP_007311989.1| - 5.4e-05 22.4 0.0 0.0001 21.5 0.0 1.4 1 0 0 1 1 1 1 Fibrillarin Methyltr_RsmB-F PF01189.17 gi|435850403|ref|YP_007311989.1| - 0.00013 21.6 0.0 0.00021 21.0 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F MTS PF05175.14 gi|435850403|ref|YP_007311989.1| - 0.00065 19.3 0.0 0.00097 18.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|435850403|ref|YP_007311989.1| - 0.0013 19.4 0.0 0.002 18.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|435850403|ref|YP_007311989.1| - 0.0014 17.8 0.0 0.0018 17.5 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase CMAS PF02353.20 gi|435850403|ref|YP_007311989.1| - 0.0024 17.2 0.0 0.003 16.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 gi|435850403|ref|YP_007311989.1| - 0.0028 17.0 0.0 0.0042 16.5 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|435850403|ref|YP_007311989.1| - 0.0038 17.1 0.0 0.0052 16.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DUF938 PF06080.12 gi|435850403|ref|YP_007311989.1| - 0.0062 16.3 0.0 0.0094 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF938) GCD14 PF08704.10 gi|435850403|ref|YP_007311989.1| - 0.014 15.1 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.20 gi|435850403|ref|YP_007311989.1| - 0.054 12.6 0.0 0.073 12.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DUF2924 PF11149.8 gi|435850403|ref|YP_007311989.1| - 0.064 13.6 0.0 0.095 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2924) Methyltransf_11 PF08241.12 gi|435850403|ref|YP_007311989.1| - 0.084 13.5 0.0 0.17 12.5 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain DNase-RNase PF02577.14 gi|435850404|ref|YP_007311990.1| - 1.9e-38 131.0 0.2 2.1e-38 130.9 0.2 1.0 1 0 0 1 1 1 1 Bifunctional nuclease DUF1614 PF07758.11 gi|435850405|ref|YP_007311991.1| - 2.6e-57 193.6 15.6 2.6e-57 193.6 15.6 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) DUF1240 PF06836.12 gi|435850405|ref|YP_007311991.1| - 1 9.9 5.9 0.64 10.6 0.4 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1240) His_biosynth PF00977.21 gi|435850406|ref|YP_007311992.1| - 5.8e-90 300.7 0.5 6.7e-90 300.5 0.5 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|435850406|ref|YP_007311992.1| - 2e-07 30.8 0.1 0.0017 17.9 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.14 gi|435850406|ref|YP_007311992.1| - 6.7e-07 28.9 0.1 0.0055 16.0 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|435850406|ref|YP_007311992.1| - 1.2e-06 27.9 0.0 0.00012 21.3 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.12 gi|435850406|ref|YP_007311992.1| - 2.3e-06 27.1 0.2 0.00062 19.2 0.1 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator DHO_dh PF01180.21 gi|435850406|ref|YP_007311992.1| - 6.8e-05 22.2 0.1 0.039 13.2 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 gi|435850406|ref|YP_007311992.1| - 8.9e-05 21.9 0.1 0.045 13.1 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase IMPDH PF00478.25 gi|435850406|ref|YP_007311992.1| - 0.002 17.2 0.2 0.57 9.1 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain PcrB PF01884.17 gi|435850406|ref|YP_007311992.1| - 0.032 13.7 0.3 0.073 12.5 0.1 1.7 2 0 0 2 2 2 0 PcrB family SBP_bac_3 PF00497.20 gi|435850406|ref|YP_007311992.1| - 0.079 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 SAP PF02037.27 gi|435850406|ref|YP_007311992.1| - 0.14 12.0 0.0 0.41 10.5 0.0 1.8 2 0 0 2 2 2 0 SAP domain MazG PF03819.17 gi|435850407|ref|YP_007311993.1| - 1.8e-15 56.8 0.0 2.6e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.17 gi|435850407|ref|YP_007311993.1| - 0.0002 21.7 0.5 0.00026 21.4 0.5 1.2 1 1 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG-like PF12643.7 gi|435850407|ref|YP_007311993.1| - 0.012 15.8 0.0 0.018 15.3 0.0 1.2 1 0 0 1 1 1 0 MazG-like family Cation_efflux PF01545.21 gi|435850408|ref|YP_007311994.1| - 1.7e-47 161.8 12.2 2e-47 161.5 12.2 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|435850408|ref|YP_007311994.1| - 5.6e-26 90.5 1.4 9.6e-26 89.7 1.4 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF799 PF05643.11 gi|435850408|ref|YP_007311994.1| - 0.045 13.3 0.0 0.1 12.2 0.0 1.7 1 0 0 1 1 1 0 Putative bacterial lipoprotein (DUF799) PGF-CTERM PF18204.1 gi|435850409|ref|YP_007311995.1| - 2.4e-07 30.5 1.6 5e-07 29.5 1.6 1.6 1 0 0 1 1 1 1 PGF-CTERM motif DUF2141 PF09912.9 gi|435850409|ref|YP_007311995.1| - 0.014 15.3 0.0 0.043 13.7 0.0 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2141) BATS PF06968.13 gi|435850409|ref|YP_007311995.1| - 0.052 13.7 0.0 0.099 12.8 0.0 1.4 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain Claudin_2 PF13903.6 gi|435850410|ref|YP_007311996.1| - 0.033 13.9 0.1 0.036 13.8 0.1 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Peptidase_U32 PF01136.19 gi|435850411|ref|YP_007311997.1| - 5.2e-114 379.2 0.0 2.1e-85 285.6 0.0 2.2 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.8 gi|435850411|ref|YP_007311997.1| - 2.9e-23 82.6 0.2 5.2e-23 81.7 0.2 1.4 1 0 0 1 1 1 1 Collagenase PEP_mutase PF13714.6 gi|435850411|ref|YP_007311997.1| - 0.0018 17.8 0.5 0.023 14.1 0.2 3.0 4 1 0 4 4 4 1 Phosphoenolpyruvate phosphomutase Nuc_deoxyrib_tr PF05014.15 gi|435850412|ref|YP_007311998.1| - 8e-07 29.1 0.0 9.1e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase BofA PF07441.11 gi|435850413|ref|YP_007311999.1| - 2.2e-13 50.2 18.5 2.6e-13 49.9 18.5 1.0 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Tweety PF04906.13 gi|435850413|ref|YP_007311999.1| - 1.2 7.7 8.3 1.5 7.4 8.3 1.1 1 0 0 1 1 1 0 Tweety S_2TMBeta PF18153.1 gi|435850413|ref|YP_007311999.1| - 1.3 8.8 3.7 1.9 8.2 3.7 1.3 1 1 0 1 1 1 0 SMODS-associating 2TM, beta-strand rich effector domain Apq12 PF12716.7 gi|435850413|ref|YP_007311999.1| - 1.7 8.6 16.4 6.9 6.7 16.4 2.1 1 1 0 1 1 1 0 Nuclear pore assembly and biogenesis Pho86 PF11124.8 gi|435850413|ref|YP_007311999.1| - 6.6 6.1 7.7 7 6.0 7.7 1.0 1 0 0 1 1 1 0 Inorganic phosphate transporter Pho86 Methyltransf_25 PF13649.6 gi|435850414|ref|YP_007312000.1| - 2e-21 76.5 0.0 5.1e-21 75.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435850414|ref|YP_007312000.1| - 4.3e-20 72.2 0.0 6.4e-20 71.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|435850414|ref|YP_007312000.1| - 1.4e-14 54.6 0.0 2.6e-14 53.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|435850414|ref|YP_007312000.1| - 6.3e-14 52.1 0.0 9.1e-14 51.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|435850414|ref|YP_007312000.1| - 8.2e-11 41.9 0.0 1.1e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|435850414|ref|YP_007312000.1| - 2.1e-08 33.8 0.0 3e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|435850414|ref|YP_007312000.1| - 7e-08 32.1 0.0 8.9e-08 31.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 gi|435850414|ref|YP_007312000.1| - 8.8e-07 28.1 0.0 1.4e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.12 gi|435850414|ref|YP_007312000.1| - 3.3e-05 23.5 0.0 4.3e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|435850414|ref|YP_007312000.1| - 0.00069 19.2 0.0 0.001 18.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|435850414|ref|YP_007312000.1| - 0.0017 18.3 0.0 0.0031 17.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|435850414|ref|YP_007312000.1| - 0.0085 16.0 0.0 0.016 15.1 0.0 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase TehB PF03848.14 gi|435850414|ref|YP_007312000.1| - 0.013 14.9 0.1 0.026 13.9 0.0 1.5 2 0 0 2 2 2 0 Tellurite resistance protein TehB PrmA PF06325.13 gi|435850414|ref|YP_007312000.1| - 0.016 14.6 0.0 0.025 14.0 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) CheR PF01739.18 gi|435850414|ref|YP_007312000.1| - 0.065 12.7 0.1 1.5 8.3 0.0 2.6 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain PCMT PF01135.19 gi|435850414|ref|YP_007312000.1| - 0.067 12.9 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA-synt_1f PF01921.18 gi|435850415|ref|YP_007312001.1| - 4.3e-127 424.0 0.0 1.4e-126 422.3 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|435850415|ref|YP_007312001.1| - 1.3e-08 34.1 0.1 0.00033 19.5 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|435850415|ref|YP_007312001.1| - 1.7e-05 24.3 0.0 0.065 12.6 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1b PF00579.25 gi|435850415|ref|YP_007312001.1| - 0.019 14.3 0.0 6.5 6.0 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) LAGLIDADG_3 PF14528.6 gi|435850415|ref|YP_007312001.1| - 0.17 12.2 0.0 0.53 10.6 0.0 1.8 1 0 0 1 1 1 0 LAGLIDADG-like domain zf-Paramyx-P PF13008.7 gi|435850415|ref|YP_007312001.1| - 1.1 8.8 9.2 1.6 8.3 0.2 3.2 3 0 0 3 3 3 0 Zinc-binding domain of Paramyxoviridae V protein TPD PF14811.6 gi|435850417|ref|YP_007312003.1| - 2.5e-45 153.7 0.3 4.3e-45 152.9 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function TPD sequence-motif NERD PF08378.11 gi|435850417|ref|YP_007312003.1| - 0.0015 19.0 0.4 0.0032 17.9 0.1 1.7 2 0 0 2 2 2 1 Nuclease-related domain HhH-GPD PF00730.25 gi|435850418|ref|YP_007312004.1| - 5.5e-15 55.7 0.0 8.5e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|435850418|ref|YP_007312004.1| - 0.004 16.9 0.1 0.029 14.2 0.0 2.3 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|435850418|ref|YP_007312004.1| - 0.02 15.5 0.0 0.067 13.8 0.0 2.0 1 1 0 1 1 1 0 Helix-hairpin-helix domain QSOX_Trx1 PF18108.1 gi|435850418|ref|YP_007312004.1| - 0.092 12.9 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 QSOX Trx-like domain Pribosyltran_N PF13793.6 gi|435850419|ref|YP_007312005.1| - 2.4e-28 98.4 0.1 9.8e-26 90.0 0.1 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|435850419|ref|YP_007312005.1| - 3.2e-19 69.0 0.3 4.6e-19 68.5 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|435850419|ref|YP_007312005.1| - 1.4e-07 31.8 0.5 2.5e-07 30.9 0.5 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|435850419|ref|YP_007312005.1| - 2.3e-06 27.2 0.1 4.7e-06 26.2 0.1 1.6 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|435850419|ref|YP_007312005.1| - 0.0031 17.1 0.0 0.0069 15.9 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase MoaC PF01967.21 gi|435850420|ref|YP_007312006.1| - 6.5e-48 162.3 1.4 7.4e-48 162.1 1.4 1.0 1 0 0 1 1 1 1 MoaC family ATPase_2 PF01637.18 gi|435850421|ref|YP_007312007.1| - 3.9e-05 23.7 2.9 4.2e-05 23.6 2.9 1.0 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea MtrB PF05440.12 gi|435850421|ref|YP_007312007.1| - 0.16 12.4 0.5 0.17 12.3 0.5 1.1 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase subunit B Ribosomal_L12_N PF16320.5 gi|435850421|ref|YP_007312007.1| - 0.42 10.3 2.1 0.66 9.7 2.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L7/L12 dimerisation domain Carb_kinase PF01256.17 gi|435850422|ref|YP_007312008.1| - 5.1e-52 176.8 3.4 7e-52 176.3 3.4 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|435850422|ref|YP_007312008.1| - 6.3e-38 130.3 3.4 2.1e-37 128.6 0.1 2.4 3 0 0 3 3 3 1 YjeF-related protein N-terminus HK PF02110.15 gi|435850422|ref|YP_007312008.1| - 3.5e-07 29.9 0.4 7.9e-07 28.7 0.4 1.6 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family TrkA_N PF02254.18 gi|435850423|ref|YP_007312009.1| - 1.1e-24 86.9 0.1 2.1e-24 86.0 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain DHHA1 PF02272.19 gi|435850423|ref|YP_007312009.1| - 1.5e-15 57.9 1.3 4.3e-14 53.1 0.0 2.8 3 0 0 3 3 3 1 DHHA1 domain DHH PF01368.20 gi|435850423|ref|YP_007312009.1| - 3.7e-13 49.6 0.1 1e-12 48.2 0.1 1.7 2 0 0 2 2 2 1 DHH family F420_oxidored PF03807.17 gi|435850423|ref|YP_007312009.1| - 0.00035 21.1 0.0 0.0018 18.8 0.0 2.3 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Epimerase PF01370.21 gi|435850423|ref|YP_007312009.1| - 0.00098 18.6 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Shikimate_DH PF01488.20 gi|435850423|ref|YP_007312009.1| - 0.022 14.8 0.0 0.064 13.3 0.0 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 gi|435850423|ref|YP_007312009.1| - 0.029 14.5 0.0 0.072 13.3 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|435850423|ref|YP_007312009.1| - 0.069 12.7 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|435850423|ref|YP_007312009.1| - 0.14 12.5 0.0 0.32 11.3 0.0 1.7 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain CxxCxxCC PF03692.15 gi|435850424|ref|YP_007312010.1| - 1.8e-09 38.2 4.7 7.3e-09 36.2 4.7 1.9 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Aconitase PF00330.20 gi|435850425|ref|YP_007312011.1| - 6.2e-96 322.2 0.2 6.1e-94 315.6 0.2 2.1 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) PRA-PH PF01503.17 gi|435850426|ref|YP_007312012.1| - 1.2e-12 48.1 0.0 1.5e-12 47.8 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|435850426|ref|YP_007312012.1| - 0.00011 22.3 1.1 0.00016 21.7 1.1 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain HrcA_DNA-bdg PF03444.15 gi|435850427|ref|YP_007312013.1| - 1.4e-36 123.9 0.3 3.8e-36 122.6 0.3 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|435850427|ref|YP_007312013.1| - 3.1e-16 59.5 1.7 2.5e-07 31.0 0.0 2.9 3 0 0 3 3 3 2 CBS domain Rrf2 PF02082.20 gi|435850427|ref|YP_007312013.1| - 7.6e-08 32.6 0.0 2.1e-07 31.2 0.0 1.8 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|435850427|ref|YP_007312013.1| - 1.2e-05 25.2 0.1 2.8e-05 24.0 0.1 1.7 1 0 0 1 1 1 1 HTH domain Aconitase_2_N PF06434.13 gi|435850427|ref|YP_007312013.1| - 0.0081 15.8 0.2 0.015 15.0 0.0 1.6 2 0 0 2 2 2 1 Aconitate hydratase 2 N-terminus Sigma70_r4_2 PF08281.12 gi|435850427|ref|YP_007312013.1| - 0.016 14.9 0.2 0.12 12.1 0.0 2.5 3 0 0 3 3 3 0 Sigma-70, region 4 TrmB PF01978.19 gi|435850427|ref|YP_007312013.1| - 0.061 13.2 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|435850427|ref|YP_007312013.1| - 0.072 12.7 0.6 0.22 11.1 0.6 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding NOG1_N PF17835.1 gi|435850428|ref|YP_007312014.1| - 1.7e-42 145.1 0.0 2.3e-42 144.7 0.0 1.2 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|435850428|ref|YP_007312014.1| - 6.2e-24 83.5 0.3 1.3e-23 82.5 0.3 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|435850428|ref|YP_007312014.1| - 6.1e-20 71.4 0.0 1.1e-19 70.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|435850428|ref|YP_007312014.1| - 6.6e-10 38.7 0.0 1.1e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|435850428|ref|YP_007312014.1| - 0.00033 20.8 0.4 0.03 14.4 0.0 2.7 2 1 1 3 3 3 1 Dynamin family Arf PF00025.21 gi|435850428|ref|YP_007312014.1| - 0.0014 18.1 0.0 0.014 14.8 0.0 2.3 1 1 0 1 1 1 1 ADP-ribosylation factor family GTP_EFTU PF00009.27 gi|435850428|ref|YP_007312014.1| - 0.0031 17.1 0.0 0.016 14.7 0.0 2.1 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain AIG1 PF04548.16 gi|435850428|ref|YP_007312014.1| - 0.015 14.6 0.1 0.027 13.8 0.1 1.5 1 1 0 1 1 1 0 AIG1 family DUF3734 PF12536.8 gi|435850428|ref|YP_007312014.1| - 0.02 15.2 0.0 0.052 13.9 0.0 1.8 1 0 0 1 1 1 0 Patatin phospholipase Ras PF00071.22 gi|435850428|ref|YP_007312014.1| - 0.061 12.9 0.1 0.5 10.0 0.1 2.3 1 1 0 1 1 1 0 Ras family Aminotran_1_2 PF00155.21 gi|435850429|ref|YP_007312015.1| - 4.2e-66 223.6 0.0 5.1e-66 223.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|435850429|ref|YP_007312015.1| - 1.3e-11 44.1 0.1 2.1e-11 43.4 0.1 1.3 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|435850429|ref|YP_007312015.1| - 6.3e-10 38.9 0.1 1e-09 38.2 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|435850429|ref|YP_007312015.1| - 1.1e-06 27.5 0.1 1.6e-06 26.9 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|435850429|ref|YP_007312015.1| - 0.0013 18.0 0.2 0.003 16.9 0.2 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase DUF1611_N PF17396.2 gi|435850429|ref|YP_007312015.1| - 0.072 13.3 0.0 0.35 11.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_N) Rossmann-like domain SIS PF01380.22 gi|435850430|ref|YP_007312016.1| - 1.8e-17 63.4 0.2 3e-17 62.7 0.2 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|435850430|ref|YP_007312016.1| - 0.001 19.1 3.6 0.072 13.1 0.4 2.2 1 1 1 2 2 2 2 SIS domain THF_DHG_CYH_C PF02882.19 gi|435850430|ref|YP_007312016.1| - 0.016 14.5 0.9 0.026 13.8 0.9 1.4 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF2383 PF09537.10 gi|435850430|ref|YP_007312016.1| - 0.052 13.9 0.1 8.6 6.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) PRMT5 PF05185.16 gi|435850430|ref|YP_007312016.1| - 0.069 13.0 0.6 0.23 11.3 0.1 1.9 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase DUF2073 PF09846.9 gi|435850432|ref|YP_007312018.1| - 1.5e-45 153.3 0.4 2e-45 153.0 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.23 gi|435850433|ref|YP_007312019.1| - 2.5e-16 59.8 0.0 3.4e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|435850433|ref|YP_007312019.1| - 6.3e-16 58.5 0.8 6.8e-07 29.0 0.4 2.9 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|435850433|ref|YP_007312019.1| - 9.8e-07 28.8 0.1 0.035 14.0 0.0 2.1 2 0 0 2 2 2 2 RsgA GTPase Arf PF00025.21 gi|435850433|ref|YP_007312019.1| - 1.4e-06 27.9 0.0 0.022 14.2 0.0 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family Roc PF08477.13 gi|435850433|ref|YP_007312019.1| - 3.1e-05 24.2 0.0 0.0029 17.8 0.0 2.2 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase FeoB_N PF02421.18 gi|435850433|ref|YP_007312019.1| - 5e-05 22.9 0.1 0.00061 19.3 0.1 2.4 1 1 0 1 1 1 1 Ferrous iron transport protein B SRPRB PF09439.10 gi|435850433|ref|YP_007312019.1| - 8e-05 22.1 0.0 0.037 13.5 0.0 2.4 2 1 0 2 2 2 2 Signal recognition particle receptor beta subunit Septin PF00735.18 gi|435850433|ref|YP_007312019.1| - 0.00045 19.6 0.0 0.00064 19.1 0.0 1.2 1 0 0 1 1 1 1 Septin AAA_24 PF13479.6 gi|435850433|ref|YP_007312019.1| - 0.0009 19.0 0.1 0.0025 17.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain MMR_HSR1_Xtn PF16897.5 gi|435850433|ref|YP_007312019.1| - 0.0012 18.8 0.0 0.002 18.1 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Ras PF00071.22 gi|435850433|ref|YP_007312019.1| - 0.0018 17.9 0.0 0.82 9.3 0.0 2.6 2 1 0 2 2 2 1 Ras family AAA PF00004.29 gi|435850433|ref|YP_007312019.1| - 0.0024 18.3 0.1 0.0056 17.1 0.1 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.17 gi|435850433|ref|YP_007312019.1| - 0.0068 15.5 0.0 0.0097 15.0 0.0 1.2 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_16 PF13191.6 gi|435850433|ref|YP_007312019.1| - 0.0071 16.7 0.0 0.011 16.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|435850433|ref|YP_007312019.1| - 0.0097 16.4 0.0 0.018 15.5 0.0 1.4 1 1 0 1 1 1 1 ABC transporter NTPase_1 PF03266.15 gi|435850433|ref|YP_007312019.1| - 0.014 15.3 0.0 0.026 14.4 0.0 1.6 1 0 0 1 1 1 0 NTPase AAA_18 PF13238.6 gi|435850433|ref|YP_007312019.1| - 0.016 15.8 0.0 0.048 14.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|435850433|ref|YP_007312019.1| - 0.017 15.1 0.1 0.034 14.1 0.1 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|435850433|ref|YP_007312019.1| - 0.038 14.4 0.0 0.079 13.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase TniB PF05621.11 gi|435850433|ref|YP_007312019.1| - 0.054 12.9 0.0 0.4 10.1 0.0 2.4 2 1 0 2 2 2 0 Bacterial TniB protein MnmE_helical PF12631.7 gi|435850433|ref|YP_007312019.1| - 0.056 13.6 0.0 0.06 13.5 0.0 1.2 1 0 0 1 1 1 0 MnmE helical domain Dynamin_N PF00350.23 gi|435850433|ref|YP_007312019.1| - 0.057 13.5 0.0 9.8 6.2 0.0 2.3 1 1 1 2 2 2 0 Dynamin family NB-ARC PF00931.22 gi|435850433|ref|YP_007312019.1| - 0.063 12.4 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Ribo_biogen_C PF04034.13 gi|435850433|ref|YP_007312019.1| - 0.068 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Ribosome biogenesis protein, C-terminal AAA_28 PF13521.6 gi|435850433|ref|YP_007312019.1| - 0.069 13.4 0.1 0.27 11.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|435850433|ref|YP_007312019.1| - 0.09 12.7 0.0 0.35 10.8 0.0 1.9 2 1 0 2 2 2 0 NACHT domain AAA_25 PF13481.6 gi|435850433|ref|YP_007312019.1| - 0.094 12.3 0.0 0.17 11.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain AIG1 PF04548.16 gi|435850433|ref|YP_007312019.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.4 1 1 0 1 1 1 0 AIG1 family PPV_E1_C PF00519.17 gi|435850433|ref|YP_007312019.1| - 0.12 11.2 0.0 0.18 10.6 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase cobW PF02492.19 gi|435850433|ref|YP_007312019.1| - 0.12 12.0 0.0 1.9 8.0 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|435850433|ref|YP_007312019.1| - 0.12 12.6 0.0 0.36 11.1 0.0 1.9 2 1 0 2 2 2 0 AAA domain PhoU PF01895.19 gi|435850434|ref|YP_007312020.1| - 1.3e-26 92.8 12.8 1.9e-17 63.5 0.9 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|435850434|ref|YP_007312020.1| - 2.1e-11 43.5 0.1 5.4e-11 42.1 0.1 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PspA_IM30 PF04012.12 gi|435850434|ref|YP_007312020.1| - 0.017 14.7 1.2 4.3 6.9 1.1 2.4 2 0 0 2 2 2 0 PspA/IM30 family 7TMR-HDED PF07697.11 gi|435850434|ref|YP_007312020.1| - 0.082 13.0 1.1 0.19 11.8 0.2 1.9 2 0 0 2 2 2 0 7TM-HD extracellular RecG_N PF17190.4 gi|435850434|ref|YP_007312020.1| - 0.17 12.7 2.6 0.62 10.8 1.7 2.3 1 1 1 2 2 2 0 RecG N-terminal helical domain Lactamase_B_3 PF13483.6 gi|435850435|ref|YP_007312021.1| - 9.9e-22 77.6 0.0 1.3e-21 77.2 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|435850435|ref|YP_007312021.1| - 3e-06 26.9 0.0 4.5e-06 26.3 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Rpr2 PF04032.16 gi|435850436|ref|YP_007312022.1| - 1.2e-15 57.5 0.3 1.8e-15 57.0 0.3 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.7 gi|435850436|ref|YP_007312022.1| - 0.014 15.4 0.3 0.027 14.5 0.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon DUF35_N PF12172.8 gi|435850436|ref|YP_007312022.1| - 0.073 13.0 2.3 0.12 12.3 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) ribosomal_L24 PF17136.4 gi|435850436|ref|YP_007312022.1| - 0.08 13.4 0.1 0.14 12.6 0.1 1.5 1 0 0 1 1 1 0 Ribosomal proteins 50S L24/mitochondrial 39S L24 NMD3 PF04981.13 gi|435850436|ref|YP_007312022.1| - 0.093 12.2 0.6 0.22 11.0 0.6 1.5 1 1 0 1 1 1 0 NMD3 family YhfH PF14149.6 gi|435850436|ref|YP_007312022.1| - 0.49 10.4 3.2 0.58 10.2 0.2 2.2 2 0 0 2 2 2 0 YhfH-like protein RecR PF02132.15 gi|435850436|ref|YP_007312022.1| - 4.6 6.9 5.5 1.1 8.8 0.5 2.4 3 0 0 3 3 3 0 RecR protein FeoB_associated PF12669.7 gi|435850437|ref|YP_007312023.1| - 1 9.8 9.9 0.19 12.1 3.2 2.3 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein TrmB PF01978.19 gi|435850438|ref|YP_007312024.1| - 6.3e-06 26.0 0.1 8.2e-06 25.6 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|435850438|ref|YP_007312024.1| - 8.1e-05 22.5 0.1 9e-05 22.4 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.22 gi|435850438|ref|YP_007312024.1| - 0.00026 20.9 0.1 0.00039 20.3 0.1 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|435850438|ref|YP_007312024.1| - 0.00077 19.3 0.0 0.00098 19.0 0.0 1.2 1 0 0 1 1 1 1 MarR family DUF4423 PF14394.6 gi|435850438|ref|YP_007312024.1| - 0.00091 19.0 0.3 0.001 18.8 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.19 gi|435850438|ref|YP_007312024.1| - 0.0012 19.0 0.1 0.002 18.3 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TFIIE_alpha PF02002.17 gi|435850438|ref|YP_007312024.1| - 0.0016 18.3 0.3 0.0018 18.1 0.3 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HemN_C PF06969.16 gi|435850438|ref|YP_007312024.1| - 0.0029 17.6 0.0 0.0041 17.2 0.0 1.3 1 0 0 1 1 1 1 HemN C-terminal domain Rrf2 PF02082.20 gi|435850438|ref|YP_007312024.1| - 0.0052 17.1 0.1 0.0064 16.8 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|435850438|ref|YP_007312024.1| - 0.015 15.3 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Topoisom_bac PF01131.20 gi|435850438|ref|YP_007312024.1| - 0.05 12.6 0.1 0.05 12.6 0.1 1.1 1 0 0 1 1 1 0 DNA topoisomerase HTH_27 PF13463.6 gi|435850438|ref|YP_007312024.1| - 0.074 13.5 0.1 0.097 13.2 0.1 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain Rio2_N PF09202.11 gi|435850438|ref|YP_007312024.1| - 0.091 13.0 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal HTH_Crp_2 PF13545.6 gi|435850438|ref|YP_007312024.1| - 0.13 12.3 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Glycos_transf_2 PF00535.26 gi|435850439|ref|YP_007312025.1| - 4.6e-23 81.9 0.0 6.2e-23 81.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|435850439|ref|YP_007312025.1| - 0.0024 17.8 0.0 0.0044 16.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Sensor PF13796.6 gi|435850439|ref|YP_007312025.1| - 0.0047 17.0 0.4 0.0047 17.0 0.4 2.5 2 1 0 2 2 2 1 Putative sensor Glyco_tranf_2_4 PF13704.6 gi|435850439|ref|YP_007312025.1| - 0.05 14.1 0.0 0.096 13.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Caveolin PF01146.17 gi|435850439|ref|YP_007312025.1| - 7.4 6.5 5.9 2 8.4 1.8 1.9 2 0 0 2 2 2 0 Caveolin Glycos_transf_1 PF00534.20 gi|435850440|ref|YP_007312026.1| - 2.2e-35 121.7 0.1 2.9e-35 121.3 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|435850440|ref|YP_007312026.1| - 1.2e-24 87.3 0.1 1.9e-24 86.6 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|435850440|ref|YP_007312026.1| - 3.6e-23 82.4 0.0 1.2e-22 80.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|435850440|ref|YP_007312026.1| - 1.7e-10 41.6 0.0 3e-10 40.7 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|435850440|ref|YP_007312026.1| - 3.1e-06 27.5 0.0 5.7e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase_2 PF02350.19 gi|435850440|ref|YP_007312026.1| - 2.9e-05 23.1 0.0 4.6e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glycos_transf_1 PF00534.20 gi|435850441|ref|YP_007312027.1| - 5e-30 104.3 0.0 9.8e-30 103.3 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|435850441|ref|YP_007312027.1| - 1.1e-16 61.5 0.1 3.5e-16 59.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|435850441|ref|YP_007312027.1| - 4.1e-09 36.7 0.0 6.2e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Epimerase_2 PF02350.19 gi|435850441|ref|YP_007312027.1| - 7.3e-05 21.8 0.0 0.00059 18.8 0.0 2.2 3 0 0 3 3 3 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_1_2 PF13524.6 gi|435850441|ref|YP_007312027.1| - 0.12 12.8 0.0 0.44 11.0 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferases group 1 AglB_L1 PF18079.1 gi|435850442|ref|YP_007312028.1| - 8.7e-21 74.0 1.1 1.7e-20 73.1 1.1 1.5 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain STT3 PF02516.14 gi|435850442|ref|YP_007312028.1| - 7.5e-20 71.3 41.1 1.9e-19 70.0 41.1 1.6 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.6 gi|435850442|ref|YP_007312028.1| - 0.00013 22.3 6.6 0.00013 22.3 6.6 4.2 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Big_6 PF17936.1 gi|435850442|ref|YP_007312028.1| - 0.11 12.7 0.0 0.26 11.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial Ig domain ATPase PF06745.13 gi|435850443|ref|YP_007312029.1| - 5.7e-73 245.1 0.7 6.4e-73 244.9 0.7 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|435850443|ref|YP_007312029.1| - 4.5e-07 28.8 0.1 5.9e-07 28.5 0.1 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.15 gi|435850443|ref|YP_007312029.1| - 0.012 15.0 0.0 0.023 14.0 0.0 1.6 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|435850443|ref|YP_007312029.1| - 0.02 14.5 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|435850443|ref|YP_007312029.1| - 0.02 14.9 0.0 0.026 14.5 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit S-layer PF07752.11 gi|435850445|ref|YP_007312031.1| - 3e-165 547.6 23.9 1.8e-84 282.9 8.0 2.0 2 0 0 2 2 2 2 S-layer protein PGF-CTERM PF18204.1 gi|435850445|ref|YP_007312031.1| - 3.9e-11 42.5 0.9 3.9e-11 42.5 0.9 2.0 2 0 0 2 2 2 1 PGF-CTERM motif ZoocinA_TRD PF16775.5 gi|435850445|ref|YP_007312031.1| - 0.005 17.0 1.0 13 6.0 0.0 4.3 4 0 0 4 4 4 2 Target recognition domain of lytic exoenzyme CBM39 PF15886.5 gi|435850445|ref|YP_007312031.1| - 0.032 14.1 0.3 19 5.2 0.0 3.1 2 2 0 2 2 2 0 Carbohydrate binding domain (family 32) Crystall PF00030.19 gi|435850445|ref|YP_007312031.1| - 0.061 13.5 0.1 17 5.7 0.0 2.8 2 0 0 2 2 2 0 Beta/Gamma crystallin DNA_pol_B PF00136.21 gi|435850447|ref|YP_007312033.1| - 4.2e-110 368.6 0.0 7e-110 367.9 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|435850447|ref|YP_007312033.1| - 1.7e-56 191.8 0.0 2.5e-56 191.3 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|435850447|ref|YP_007312033.1| - 0.008 15.9 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|435850447|ref|YP_007312033.1| - 0.0083 16.1 0.0 0.019 14.9 0.0 1.6 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_2 PF03175.13 gi|435850447|ref|YP_007312033.1| - 0.064 12.1 0.3 0.31 9.8 0.0 1.9 1 1 0 2 2 2 0 DNA polymerase type B, organellar and viral PhoU PF01895.19 gi|435850448|ref|YP_007312034.1| - 3.2e-41 139.7 11.9 6.3e-23 81.0 3.1 2.1 2 0 0 2 2 2 2 PhoU domain GCP_C_terminal PF04130.13 gi|435850448|ref|YP_007312034.1| - 0.024 14.1 0.3 0.03 13.8 0.3 1.2 1 0 0 1 1 1 0 Gamma tubulin complex component C-terminal CEP209_CC5 PF16574.5 gi|435850448|ref|YP_007312034.1| - 0.046 13.9 0.9 0.54 10.4 0.1 2.2 2 0 0 2 2 2 0 Coiled-coil region of centrosome protein CE290 ABC_tran PF00005.27 gi|435850449|ref|YP_007312035.1| - 1.3e-30 106.7 0.0 1.8e-30 106.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435850449|ref|YP_007312035.1| - 4.5e-13 49.7 0.0 6.4e-06 26.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|435850449|ref|YP_007312035.1| - 3.9e-08 33.0 0.1 2.8e-06 26.9 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|435850449|ref|YP_007312035.1| - 8.3e-07 29.0 0.0 1.2e-06 28.5 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|435850449|ref|YP_007312035.1| - 0.00011 21.9 0.0 0.00036 20.2 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|435850449|ref|YP_007312035.1| - 0.00024 21.5 0.0 0.00052 20.4 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|435850449|ref|YP_007312035.1| - 0.0003 21.3 0.0 0.00077 20.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|435850449|ref|YP_007312035.1| - 0.00069 19.6 0.0 0.0016 18.4 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|435850449|ref|YP_007312035.1| - 0.001 19.3 0.0 0.0019 18.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|435850449|ref|YP_007312035.1| - 0.0057 16.2 0.0 0.016 14.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|435850449|ref|YP_007312035.1| - 0.0059 15.8 0.0 0.0078 15.4 0.0 1.1 1 0 0 1 1 1 1 NB-ARC domain Rad17 PF03215.15 gi|435850449|ref|YP_007312035.1| - 0.0073 16.2 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_18 PF13238.6 gi|435850449|ref|YP_007312035.1| - 0.03 14.8 0.0 0.071 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|435850449|ref|YP_007312035.1| - 0.044 14.2 0.0 0.32 11.4 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|435850449|ref|YP_007312035.1| - 0.047 13.9 0.0 0.062 13.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|435850449|ref|YP_007312035.1| - 0.1 12.3 0.0 0.27 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|435850449|ref|YP_007312035.1| - 0.11 12.2 0.0 1.2 8.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|435850449|ref|YP_007312035.1| - 0.12 12.8 0.0 0.51 10.8 0.0 2.0 2 0 0 2 2 2 0 RNA helicase NACHT PF05729.12 gi|435850449|ref|YP_007312035.1| - 0.14 12.1 0.0 0.45 10.4 0.0 1.7 2 0 0 2 2 2 0 NACHT domain PPV_E1_C PF00519.17 gi|435850449|ref|YP_007312035.1| - 0.2 10.5 0.0 0.44 9.3 0.0 1.5 1 0 0 1 1 1 0 Papillomavirus helicase BPD_transp_1 PF00528.22 gi|435850450|ref|YP_007312036.1| - 6.5e-26 91.2 17.1 6.5e-26 91.2 17.1 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TssN PF17555.2 gi|435850450|ref|YP_007312036.1| - 2.8 7.2 9.5 3.3 7.0 1.8 2.6 3 0 0 3 3 3 0 Type VI secretion system, TssN BPD_transp_1 PF00528.22 gi|435850451|ref|YP_007312037.1| - 1.1e-20 74.1 15.4 1.1e-20 74.1 15.4 2.3 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF5381 PF17353.2 gi|435850451|ref|YP_007312037.1| - 5.7 6.7 9.3 0.15 11.8 1.1 2.4 2 1 0 3 3 3 0 Family of unknown function (DUF5381) PBP_like_2 PF12849.7 gi|435850452|ref|YP_007312038.1| - 2.5e-43 148.8 2.8 5.6e-43 147.6 2.8 1.5 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|435850452|ref|YP_007312038.1| - 7.1e-20 70.9 0.2 9.4e-20 70.5 0.2 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|435850452|ref|YP_007312038.1| - 5.1e-06 26.4 0.0 8.9e-06 25.6 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|435850452|ref|YP_007312038.1| - 0.021 14.3 0.0 0.038 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Amidohydro_1 PF01979.20 gi|435850453|ref|YP_007312039.1| - 7.3e-20 71.6 0.1 1.2e-19 70.9 0.1 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|435850453|ref|YP_007312039.1| - 5.1e-14 52.6 0.5 1.3e-06 28.2 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family ATPase PF06745.13 gi|435850454|ref|YP_007312040.1| - 1.1e-42 146.0 0.1 8.2e-42 143.1 0.1 2.0 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|435850454|ref|YP_007312040.1| - 3.4e-08 33.3 0.0 9.4e-08 31.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|435850454|ref|YP_007312040.1| - 4.5e-08 32.8 0.0 6.2e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain RecA PF00154.21 gi|435850454|ref|YP_007312040.1| - 5.7e-06 26.0 0.0 8e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.11 gi|435850454|ref|YP_007312040.1| - 1.9e-05 23.5 0.1 0.0098 14.6 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein AAA_18 PF13238.6 gi|435850454|ref|YP_007312040.1| - 6.8e-05 23.4 0.0 0.00016 22.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|435850454|ref|YP_007312040.1| - 8.3e-05 22.4 0.0 0.00016 21.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|435850454|ref|YP_007312040.1| - 0.00027 21.0 0.0 0.0011 19.0 0.0 2.2 2 1 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|435850454|ref|YP_007312040.1| - 0.00033 20.6 0.0 0.00081 19.4 0.0 1.5 1 1 0 1 1 1 1 NACHT domain Rad51 PF08423.11 gi|435850454|ref|YP_007312040.1| - 0.0004 19.7 0.0 0.00053 19.3 0.0 1.2 1 0 0 1 1 1 1 Rad51 T2SSE PF00437.20 gi|435850454|ref|YP_007312040.1| - 0.00044 19.4 0.0 0.00068 18.8 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein RNA_helicase PF00910.22 gi|435850454|ref|YP_007312040.1| - 0.00094 19.5 0.0 0.11 13.0 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_22 PF13401.6 gi|435850454|ref|YP_007312040.1| - 0.00098 19.4 0.0 0.0042 17.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|435850454|ref|YP_007312040.1| - 0.0014 19.0 0.0 0.0036 17.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|435850454|ref|YP_007312040.1| - 0.0015 18.3 0.0 0.0031 17.3 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_7 PF12775.7 gi|435850454|ref|YP_007312040.1| - 0.0016 17.9 0.0 0.0041 16.7 0.0 1.7 2 0 0 2 2 2 1 P-loop containing dynein motor region PPV_E1_C PF00519.17 gi|435850454|ref|YP_007312040.1| - 0.0021 16.9 0.1 0.011 14.6 0.1 1.8 2 0 0 2 2 2 1 Papillomavirus helicase AAA_16 PF13191.6 gi|435850454|ref|YP_007312040.1| - 0.0029 18.0 0.0 0.0079 16.6 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_32 PF13654.6 gi|435850454|ref|YP_007312040.1| - 0.0039 16.0 0.0 0.061 12.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|435850454|ref|YP_007312040.1| - 0.0044 17.5 0.0 0.0075 16.7 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|435850454|ref|YP_007312040.1| - 0.0062 16.5 0.0 0.013 15.4 0.0 1.6 1 0 0 1 1 1 1 NTPase AAA_28 PF13521.6 gi|435850454|ref|YP_007312040.1| - 0.024 14.9 0.7 0.18 12.0 0.1 2.3 2 1 0 3 3 2 0 AAA domain AAA_11 PF13086.6 gi|435850454|ref|YP_007312040.1| - 0.025 14.4 0.0 0.047 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|435850454|ref|YP_007312040.1| - 0.037 13.9 0.0 0.062 13.2 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|435850454|ref|YP_007312040.1| - 0.038 13.7 0.0 0.084 12.6 0.0 1.6 2 0 0 2 2 1 0 AAA domain DUF2075 PF09848.9 gi|435850454|ref|YP_007312040.1| - 0.038 13.2 0.0 0.058 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.6 gi|435850454|ref|YP_007312040.1| - 0.04 14.1 0.0 0.12 12.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|435850454|ref|YP_007312040.1| - 0.059 13.0 0.1 0.37 10.4 0.0 2.3 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain AAA_5 PF07728.14 gi|435850454|ref|YP_007312040.1| - 0.099 12.6 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Eco57I PF07669.11 gi|435850454|ref|YP_007312040.1| - 0.14 12.7 0.0 0.3 11.6 0.0 1.6 1 0 0 1 1 1 0 Eco57I restriction-modification methylase Sigma54_activat PF00158.26 gi|435850454|ref|YP_007312040.1| - 0.17 11.6 0.0 0.42 10.3 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain DUF1614 PF07758.11 gi|435850455|ref|YP_007312041.1| - 5.7e-33 114.3 10.8 8.6e-33 113.7 10.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) EbsA PF17255.2 gi|435850455|ref|YP_007312041.1| - 0.25 11.7 5.7 0.049 14.0 1.4 2.0 2 1 0 2 2 2 0 EbsA-like protein KH_1 PF00013.29 gi|435850456|ref|YP_007312042.1| - 2.8e-11 43.1 9.4 6e-07 29.2 0.7 2.3 2 0 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|435850456|ref|YP_007312042.1| - 0.041 13.8 2.3 5.5 6.9 0.4 2.7 2 0 0 2 2 2 0 KH domain Ribosomal_L6 PF00347.23 gi|435850456|ref|YP_007312042.1| - 0.049 14.3 0.2 3.4 8.4 0.0 2.5 2 0 0 2 2 2 0 Ribosomal protein L6 KH_2 PF07650.17 gi|435850456|ref|YP_007312042.1| - 0.15 11.9 6.7 3.2 7.6 0.3 2.5 2 0 0 2 2 2 0 KH domain RIO1 PF01163.22 gi|435850457|ref|YP_007312043.1| - 4.6e-59 199.2 0.7 7e-59 198.6 0.7 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|435850457|ref|YP_007312043.1| - 0.00026 20.5 0.2 0.00047 19.6 0.1 1.5 1 1 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|435850457|ref|YP_007312043.1| - 0.00033 20.1 0.1 0.12 11.7 0.0 2.1 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 gi|435850457|ref|YP_007312043.1| - 0.0012 17.7 0.0 0.0022 16.8 0.0 1.5 1 0 0 1 1 1 1 Fungal protein kinase APH PF01636.23 gi|435850457|ref|YP_007312043.1| - 0.013 15.5 0.0 0.26 11.2 0.0 2.0 1 1 1 2 2 2 0 Phosphotransferase enzyme family DUF5115 PF17142.4 gi|435850457|ref|YP_007312043.1| - 0.02 14.5 0.0 0.038 13.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5115) TBPIP PF07106.13 gi|435850457|ref|YP_007312043.1| - 0.067 13.1 0.8 0.4 10.6 0.2 2.6 2 1 1 3 3 3 0 TBPIP/Hop2 winged helix domain eIF-1a PF01176.19 gi|435850458|ref|YP_007312044.1| - 3.4e-20 71.6 0.7 4.9e-20 71.1 0.7 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 TGT PF01702.18 gi|435850459|ref|YP_007312045.1| - 2.2e-84 283.6 0.0 2.8e-84 283.3 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|435850459|ref|YP_007312045.1| - 0.0061 16.4 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) UbiA PF01040.18 gi|435850460|ref|YP_007312046.1| - 1.3e-41 142.6 18.6 1.7e-41 142.2 18.6 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Pex24p PF06398.11 gi|435850460|ref|YP_007312046.1| - 0.28 10.1 0.0 0.28 10.1 0.0 1.6 2 0 0 2 2 2 0 Integral peroxisomal membrane peroxin Pyr_redox_2 PF07992.14 gi|435850461|ref|YP_007312047.1| - 4.5e-09 36.0 0.2 0.00011 21.5 0.1 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|435850461|ref|YP_007312047.1| - 5.3e-09 35.3 0.5 5.2e-07 28.7 0.3 2.3 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|435850461|ref|YP_007312047.1| - 2e-08 33.9 0.1 3.8e-08 33.0 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|435850461|ref|YP_007312047.1| - 3.5e-08 33.4 0.0 0.0052 16.4 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|435850461|ref|YP_007312047.1| - 5.4e-07 29.3 0.0 9.1e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|435850461|ref|YP_007312047.1| - 2.2e-06 27.0 0.0 5.5e-06 25.7 0.0 1.5 1 1 0 1 1 1 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|435850461|ref|YP_007312047.1| - 2.3e-05 23.8 0.0 0.00042 19.7 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|435850461|ref|YP_007312047.1| - 5.7e-05 22.4 0.0 0.00014 21.1 0.0 1.6 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|435850461|ref|YP_007312047.1| - 0.00013 21.3 0.0 0.00028 20.2 0.0 1.5 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 gi|435850461|ref|YP_007312047.1| - 0.0017 17.5 0.2 0.0051 15.9 0.3 1.9 2 1 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|435850461|ref|YP_007312047.1| - 0.0087 16.6 0.6 0.17 12.4 0.0 2.7 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|435850461|ref|YP_007312047.1| - 0.035 13.0 0.7 0.81 8.5 0.0 2.1 1 1 0 2 2 2 0 Tryptophan halogenase AlaDh_PNT_C PF01262.21 gi|435850461|ref|YP_007312047.1| - 0.05 12.9 0.1 0.09 12.1 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|435850461|ref|YP_007312047.1| - 0.051 13.8 0.0 0.18 12.0 0.0 2.1 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Radical_SAM PF04055.21 gi|435850462|ref|YP_007312048.1| - 1.7e-17 64.3 0.0 2.3e-17 63.9 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|435850462|ref|YP_007312048.1| - 1.4e-06 28.8 0.2 3e-06 27.7 0.2 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|435850462|ref|YP_007312048.1| - 4.9e-05 23.6 0.0 9.6e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|435850462|ref|YP_007312048.1| - 0.00074 19.6 0.0 0.0016 18.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain OmpH PF03938.14 gi|435850463|ref|YP_007312049.1| - 0.0014 19.0 43.9 0.002 18.5 11.4 3.2 2 1 1 3 3 3 2 Outer membrane protein (OmpH-like) DUF4201 PF13870.6 gi|435850463|ref|YP_007312049.1| - 0.0084 15.9 18.1 0.0084 15.9 18.1 3.3 2 1 1 3 3 3 1 Domain of unknown function (DUF4201) Syntaxin_2 PF14523.6 gi|435850463|ref|YP_007312049.1| - 0.075 13.4 32.9 0.035 14.5 9.2 3.7 2 1 2 4 4 4 0 Syntaxin-like protein Golgin_A5 PF09787.9 gi|435850463|ref|YP_007312049.1| - 0.13 11.7 35.4 0.21 11.0 18.0 2.1 1 1 1 2 2 2 0 Golgin subfamily A member 5 MCPsignal PF00015.21 gi|435850463|ref|YP_007312049.1| - 0.22 11.3 11.1 0.11 12.3 0.8 3.0 1 1 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF1771 PF08590.10 gi|435850463|ref|YP_007312049.1| - 1 9.8 17.2 8.9 6.8 3.2 4.7 2 2 1 3 3 3 0 Domain of unknown function (DUF1771) BRE1 PF08647.11 gi|435850463|ref|YP_007312049.1| - 1.2 9.3 47.2 0.084 13.0 13.6 4.5 1 1 3 4 4 4 0 BRE1 E3 ubiquitin ligase DUF3158 PF11358.8 gi|435850463|ref|YP_007312049.1| - 2.7 7.7 8.8 0.63 9.8 1.2 2.8 2 2 1 3 3 3 0 Protein of unknown function (DUF3158) Laminin_II PF06009.12 gi|435850463|ref|YP_007312049.1| - 2.8 8.0 30.0 0.098 12.7 0.8 3.9 1 1 3 4 4 4 0 Laminin Domain II GAS PF13851.6 gi|435850463|ref|YP_007312049.1| - 4.8 6.5 43.1 0.13 11.6 17.6 2.7 1 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding TPR_MLP1_2 PF07926.12 gi|435850463|ref|YP_007312049.1| - 9.6 6.3 40.5 5.6 7.0 6.3 3.9 1 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein DUF4407 PF14362.6 gi|435850463|ref|YP_007312049.1| - 9.7 5.4 35.2 0.14 11.5 13.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) HAD PF12710.7 gi|435850464|ref|YP_007312050.1| - 7.5e-24 85.2 0.0 9.5e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|435850464|ref|YP_007312050.1| - 6.7e-17 62.5 0.2 9.9e-17 61.9 0.2 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|435850464|ref|YP_007312050.1| - 1.6e-10 41.2 0.2 1.1e-08 35.2 0.0 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|435850464|ref|YP_007312050.1| - 7.3e-09 35.4 0.0 4.3e-07 29.6 0.0 2.1 1 1 0 1 1 1 1 Putative Phosphatase HAD_2 PF13419.6 gi|435850464|ref|YP_007312050.1| - 4.7e-06 26.8 0.6 0.00039 20.6 0.6 2.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|435850464|ref|YP_007312050.1| - 0.00017 21.2 0.1 0.039 13.5 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase_like PF13242.6 gi|435850464|ref|YP_007312050.1| - 0.02 14.9 0.0 0.066 13.3 0.0 1.8 2 0 0 2 2 2 0 HAD-hyrolase-like HHH PF00633.23 gi|435850464|ref|YP_007312050.1| - 0.063 13.2 0.2 0.29 11.1 0.1 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif B12-binding PF02310.19 gi|435850464|ref|YP_007312050.1| - 0.093 12.8 0.1 0.72 9.9 0.0 2.3 2 0 0 2 2 2 0 B12 binding domain DUF705 PF05152.12 gi|435850464|ref|YP_007312050.1| - 0.13 11.8 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF705) Mtr2 PF10429.9 gi|435850464|ref|YP_007312050.1| - 0.14 12.1 0.0 12 5.8 0.0 2.2 2 0 0 2 2 2 0 Nuclear pore RNA shuttling protein Mtr2 MTD PF01993.18 gi|435850465|ref|YP_007312051.1| - 1.8e-122 407.9 2.8 2.1e-122 407.8 2.8 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase DUF996 PF06195.13 gi|435850466|ref|YP_007312052.1| - 0.0045 17.3 1.1 0.0046 17.3 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF996) PK_C PF02887.16 gi|435850467|ref|YP_007312053.1| - 1.6e-14 54.1 0.5 2.1e-14 53.7 0.5 1.2 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain Pyr_redox PF00070.27 gi|435850467|ref|YP_007312053.1| - 0.017 15.7 0.3 0.24 12.0 0.1 2.4 1 1 2 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase AP_endonuc_2 PF01261.24 gi|435850467|ref|YP_007312053.1| - 0.042 13.3 0.0 0.085 12.3 0.0 1.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Aldo_ket_red PF00248.21 gi|435850467|ref|YP_007312053.1| - 0.053 12.7 0.0 0.069 12.3 0.0 1.1 1 0 0 1 1 1 0 Aldo/keto reductase family PAC2 PF09754.9 gi|435850468|ref|YP_007312054.1| - 1.4e-51 175.6 0.3 1.6e-51 175.4 0.3 1.0 1 0 0 1 1 1 1 PAC2 family UTP15_C PF09384.10 gi|435850468|ref|YP_007312054.1| - 0.024 14.3 0.0 0.046 13.4 0.0 1.4 1 0 0 1 1 1 0 UTP15 C terminal Ribosomal_L9_C PF03948.14 gi|435850468|ref|YP_007312054.1| - 0.063 13.8 0.6 11 6.6 0.0 2.7 3 0 0 3 3 3 0 Ribosomal protein L9, C-terminal domain DUF473 PF04322.12 gi|435850469|ref|YP_007312055.1| - 1.4e-45 153.9 0.1 1.6e-45 153.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) tRNA-synt_2d PF01409.20 gi|435850470|ref|YP_007312056.1| - 4.9e-55 186.7 0.2 6.4e-49 166.6 0.1 3.0 1 1 2 3 3 3 2 tRNA synthetases class II core domain (F) SepRS_C PF18006.1 gi|435850470|ref|YP_007312056.1| - 5.7e-12 45.5 0.0 1.3e-11 44.3 0.0 1.7 1 0 0 1 1 1 1 O-phosphoseryl-tRNA synthetase C-terminal domain tRNA_synthFbeta PF17759.1 gi|435850470|ref|YP_007312056.1| - 1.8e-09 37.4 0.0 2.1e-06 27.3 0.0 2.3 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain Lambda_Bor PF06291.11 gi|435850470|ref|YP_007312056.1| - 0.027 14.5 0.0 0.071 13.1 0.0 1.7 1 0 0 1 1 1 0 Bor protein Translin PF01997.16 gi|435850471|ref|YP_007312057.1| - 0.00079 19.5 0.7 0.32 10.9 0.0 2.1 1 1 1 2 2 2 2 Translin family CC2-LZ PF16516.5 gi|435850471|ref|YP_007312057.1| - 0.25 11.7 4.1 0.084 13.2 1.2 1.7 2 1 0 2 2 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator UPF0147 PF03685.13 gi|435850472|ref|YP_007312058.1| - 8e-35 118.7 1.5 9e-35 118.6 1.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|435850472|ref|YP_007312058.1| - 0.0045 17.2 0.1 0.1 12.9 0.0 2.1 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0253) Auto_anti-p27 PF06677.12 gi|435850473|ref|YP_007312059.1| - 8.8e-14 51.4 0.5 1.4e-13 50.8 0.5 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|435850473|ref|YP_007312059.1| - 0.014 15.4 0.5 0.023 14.7 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.6 gi|435850473|ref|YP_007312059.1| - 0.056 13.4 0.7 0.1 12.5 0.7 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.6 gi|435850473|ref|YP_007312059.1| - 0.072 12.5 3.8 2.1 7.9 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|435850473|ref|YP_007312059.1| - 0.95 9.4 4.3 3 7.8 4.3 1.7 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) ERCC4 PF02732.15 gi|435850474|ref|YP_007312060.1| - 4e-28 98.6 0.8 7.9e-28 97.6 0.1 1.9 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.31 gi|435850474|ref|YP_007312060.1| - 1.1e-22 80.5 3.9 1.4e-21 76.9 0.1 3.1 4 0 0 4 4 4 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|435850474|ref|YP_007312060.1| - 1.6e-16 60.6 0.3 8.2e-16 58.3 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|435850474|ref|YP_007312060.1| - 4e-16 59.5 0.3 1.7e-15 57.4 0.0 2.2 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|435850474|ref|YP_007312060.1| - 8.9e-14 51.3 0.1 1.1e-12 47.9 0.1 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|435850474|ref|YP_007312060.1| - 4.4e-11 43.2 0.0 2.1e-10 41.1 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|435850474|ref|YP_007312060.1| - 5.5e-06 26.0 0.0 0.00017 21.3 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|435850474|ref|YP_007312060.1| - 0.0011 19.6 4.6 0.018 15.6 0.0 4.1 3 1 1 4 4 4 1 5'-3' exonuclease, C-terminal SAM fold Organ_specific PF10950.8 gi|435850474|ref|YP_007312060.1| - 0.0058 17.3 5.2 0.59 10.9 0.3 3.7 3 0 0 3 3 3 1 Organ specific protein HHH_8 PF14716.6 gi|435850474|ref|YP_007312060.1| - 0.025 14.9 0.1 0.1 13.0 0.1 2.2 1 0 0 1 1 1 0 Helix-hairpin-helix domain Asp_Glu_race PF01177.22 gi|435850474|ref|YP_007312060.1| - 0.026 14.4 0.9 0.14 12.0 0.1 2.6 2 1 0 2 2 2 0 Asp/Glu/Hydantoin racemase PTPS_related PF10131.9 gi|435850474|ref|YP_007312060.1| - 0.08 11.2 0.2 0.12 10.7 0.2 1.2 1 0 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein HGTP_anticodon PF03129.20 gi|435850475|ref|YP_007312061.1| - 3.7e-25 87.9 0.4 4.6e-24 84.4 0.1 2.5 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|435850475|ref|YP_007312061.1| - 1e-10 41.9 0.0 2.7e-10 40.5 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-C2H2 PF00096.26 gi|435850475|ref|YP_007312061.1| - 0.022 15.2 1.9 0.087 13.3 0.3 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|435850475|ref|YP_007312061.1| - 0.086 13.7 1.3 2 9.5 0.3 2.8 2 0 0 2 2 2 0 C2H2-type zinc finger TRAF6_Z2 PF18048.1 gi|435850475|ref|YP_007312061.1| - 1.4 9.0 6.4 0.38 10.9 0.2 2.6 3 0 0 3 3 3 0 TNF receptor-associated factor 6 zinc finger 2 Zn-ribbon_8 PF09723.10 gi|435850475|ref|YP_007312061.1| - 2.1 8.5 6.1 35 4.6 6.1 2.4 1 1 1 2 2 2 0 Zinc ribbon domain DeoC PF01791.9 gi|435850476|ref|YP_007312062.1| - 8.1e-61 205.6 0.0 9.4e-61 205.4 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.24 gi|435850476|ref|YP_007312062.1| - 0.00012 21.8 0.2 0.00022 20.9 0.1 1.5 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.17 gi|435850476|ref|YP_007312062.1| - 0.0077 15.6 0.0 1.3 8.3 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase AP_endonuc_2 PF01261.24 gi|435850476|ref|YP_007312062.1| - 0.039 13.4 0.0 0.054 12.9 0.0 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Peptidase_C24 PF03510.14 gi|435850476|ref|YP_007312062.1| - 0.079 13.4 0.0 0.18 12.3 0.0 1.7 1 0 0 1 1 1 0 2C endopeptidase (C24) cysteine protease family PucR PF07905.11 gi|435850476|ref|YP_007312062.1| - 0.12 12.7 0.0 6.7 7.0 0.0 2.3 1 1 0 2 2 2 0 Purine catabolism regulatory protein-like family DUF561 PF04481.12 gi|435850476|ref|YP_007312062.1| - 0.15 11.2 0.1 0.27 10.4 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF561) dUTPase PF00692.19 gi|435850477|ref|YP_007312063.1| - 6.1e-10 38.9 0.0 8.8e-10 38.4 0.0 1.2 1 0 0 1 1 1 1 dUTPase VCBS PF13517.6 gi|435850478|ref|YP_007312064.1| - 1.5e-08 35.1 22.9 0.00022 21.8 5.2 4.4 1 1 3 4 4 4 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.23 gi|435850478|ref|YP_007312064.1| - 0.97 9.6 17.6 0.74 10.0 2.6 4.3 4 0 0 4 4 4 0 FG-GAP repeat Lipase_bact_N PF12262.8 gi|435850478|ref|YP_007312064.1| - 6.2 6.1 5.9 45 3.3 0.2 3.1 2 1 1 3 3 3 0 Bacterial virulence factor lipase N-terminal SNARE_assoc PF09335.11 gi|435850480|ref|YP_007312066.1| - 1.3e-12 48.2 3.4 1.3e-12 48.2 3.4 1.9 1 1 1 2 2 2 1 SNARE associated Golgi protein DUF4112 PF13430.6 gi|435850480|ref|YP_007312066.1| - 0.12 12.6 1.1 1.8 8.9 0.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4112) HhH-GPD PF00730.25 gi|435850481|ref|YP_007312067.1| - 1.1e-24 86.9 0.0 1.5e-24 86.5 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|435850481|ref|YP_007312067.1| - 1.1e-11 43.9 0.0 1e-09 37.8 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|435850481|ref|YP_007312067.1| - 8.4e-05 23.1 0.0 0.33 11.6 0.0 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.9 gi|435850481|ref|YP_007312067.1| - 0.0011 19.3 4.6 0.0019 18.5 4.6 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_2 PF12826.7 gi|435850481|ref|YP_007312067.1| - 0.076 13.1 0.0 4.5 7.4 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif Fae PF08714.11 gi|435850482|ref|YP_007312068.1| - 6.4e-71 237.4 0.3 1.6e-70 236.2 0.3 1.7 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.24 gi|435850482|ref|YP_007312068.1| - 4.5e-22 78.8 4.1 9.4e-22 77.7 2.9 2.1 2 1 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|435850482|ref|YP_007312068.1| - 5.4e-05 22.7 0.9 0.00022 20.7 0.9 2.0 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.17 gi|435850482|ref|YP_007312068.1| - 0.04 13.4 2.5 0.53 9.7 0.4 2.3 2 0 0 2 2 2 0 PcrB family 4HFCP_synth PF04476.13 gi|435850482|ref|YP_007312068.1| - 0.051 13.3 1.6 0.93 9.2 0.0 2.8 3 1 0 3 3 3 0 4-HFC-P synthase QRPTase_C PF01729.19 gi|435850482|ref|YP_007312068.1| - 0.065 13.0 1.6 1 9.1 0.6 2.8 1 1 2 3 3 3 0 Quinolinate phosphoribosyl transferase, C-terminal domain TIM PF00121.18 gi|435850483|ref|YP_007312069.1| - 7.5e-13 48.4 0.0 8.9e-13 48.2 0.0 1.2 1 0 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.14 gi|435850483|ref|YP_007312069.1| - 0.00034 20.0 1.4 0.00065 19.1 1.0 1.6 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|435850483|ref|YP_007312069.1| - 0.006 16.0 3.3 0.01 15.3 3.3 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase Hydrolase_like PF13242.6 gi|435850483|ref|YP_007312069.1| - 0.063 13.4 0.3 16 5.6 0.0 2.3 2 0 0 2 2 2 0 HAD-hyrolase-like FMN_dh PF01070.18 gi|435850483|ref|YP_007312069.1| - 0.14 11.2 3.5 0.074 12.1 1.2 1.6 2 0 0 2 2 2 0 FMN-dependent dehydrogenase PDH PF02153.17 gi|435850485|ref|YP_007312071.1| - 4.5e-56 189.7 0.0 6.9e-56 189.1 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_2 PF03446.15 gi|435850485|ref|YP_007312071.1| - 6.7e-09 36.1 0.0 1.2e-08 35.3 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|435850485|ref|YP_007312071.1| - 3.8e-05 24.2 0.0 0.0001 22.8 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|435850485|ref|YP_007312071.1| - 0.0018 17.6 0.0 0.0033 16.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|435850485|ref|YP_007312071.1| - 0.0071 16.3 2.0 0.22 11.5 1.9 2.6 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.12 gi|435850485|ref|YP_007312071.1| - 0.0075 15.9 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain FDX-ACB PF03147.14 gi|435850485|ref|YP_007312071.1| - 0.022 15.1 0.0 0.049 14.0 0.0 1.5 1 0 0 1 1 1 0 Ferredoxin-fold anticodon binding domain Cnd1 PF12717.7 gi|435850485|ref|YP_007312071.1| - 0.032 14.3 0.1 11 6.1 0.0 2.9 3 0 0 3 3 3 0 non-SMC mitotic condensation complex subunit 1 3HCDH_N PF02737.18 gi|435850485|ref|YP_007312071.1| - 0.033 14.1 0.1 3.9 7.3 0.0 2.3 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DpaA_N PF16924.5 gi|435850485|ref|YP_007312071.1| - 0.086 12.9 0.0 2.3 8.3 0.0 2.6 2 0 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain Beta_helix_2 PF18835.1 gi|435850485|ref|YP_007312071.1| - 0.11 12.2 0.1 0.84 9.4 0.0 2.2 2 0 0 2 2 2 0 Beta helix repeat of Inulin fructotransferase Shikimate_dh_N PF08501.11 gi|435850486|ref|YP_007312072.1| - 2.8e-26 91.6 0.0 8.4e-26 90.1 0.0 1.8 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|435850486|ref|YP_007312072.1| - 1.5e-15 56.6 1.4 3.3e-15 55.5 1.4 1.6 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|435850486|ref|YP_007312072.1| - 2.6e-14 53.5 0.1 4.1e-14 52.8 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|435850486|ref|YP_007312072.1| - 1.4e-05 25.6 0.2 2.4e-05 24.8 0.2 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|435850486|ref|YP_007312072.1| - 0.00041 20.6 0.2 0.00078 19.7 0.2 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|435850486|ref|YP_007312072.1| - 0.0008 18.8 0.4 0.0019 17.6 0.1 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|435850486|ref|YP_007312072.1| - 0.001 18.4 2.5 0.0018 17.6 2.5 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|435850486|ref|YP_007312072.1| - 0.0031 16.8 0.0 0.0043 16.3 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase_NAD PF00670.21 gi|435850486|ref|YP_007312072.1| - 0.004 17.2 1.2 0.0076 16.3 1.2 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.6 gi|435850486|ref|YP_007312072.1| - 0.0069 16.8 0.1 0.013 16.0 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding ApbA PF02558.16 gi|435850486|ref|YP_007312072.1| - 0.0078 15.9 0.1 0.015 15.0 0.1 1.5 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA adh_short PF00106.25 gi|435850486|ref|YP_007312072.1| - 0.02 14.3 0.6 0.084 12.3 0.6 1.9 1 1 0 1 1 1 0 short chain dehydrogenase IlvN PF07991.12 gi|435850486|ref|YP_007312072.1| - 0.023 14.3 0.1 0.048 13.2 0.1 1.6 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|435850486|ref|YP_007312072.1| - 0.033 14.1 0.2 0.06 13.2 0.2 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.21 gi|435850486|ref|YP_007312072.1| - 0.21 10.9 0.8 4.5 6.6 0.3 2.2 2 0 0 2 2 2 0 ThiF family DHquinase_I PF01487.15 gi|435850487|ref|YP_007312073.1| - 2.1e-50 172.1 0.0 2.5e-50 171.9 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Dehalogenase PF13486.6 gi|435850487|ref|YP_007312073.1| - 0.041 13.3 0.0 0.063 12.7 0.0 1.4 1 0 0 1 1 1 0 Reductive dehalogenase subunit DHQS PF01959.16 gi|435850488|ref|YP_007312074.1| - 2.5e-148 493.7 2.1 2.8e-148 493.5 2.1 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II UPF0180 PF03698.13 gi|435850488|ref|YP_007312074.1| - 0.025 14.7 0.5 3.4 7.9 0.0 3.0 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0180) SRP54_N PF02881.19 gi|435850488|ref|YP_007312074.1| - 0.051 13.8 0.1 0.14 12.4 0.1 1.7 1 0 0 1 1 1 0 SRP54-type protein, helical bundle domain TPP_enzyme_M PF00205.22 gi|435850488|ref|YP_007312074.1| - 0.092 12.5 0.0 0.31 10.8 0.0 2.0 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain TOBE_2 PF08402.10 gi|435850488|ref|YP_007312074.1| - 0.17 12.1 0.8 1.3 9.3 0.1 2.6 3 0 0 3 3 3 0 TOBE domain DeoC PF01791.9 gi|435850489|ref|YP_007312075.1| - 4.6e-64 216.3 0.3 5.4e-64 216.0 0.3 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.24 gi|435850489|ref|YP_007312075.1| - 0.013 15.1 0.1 0.019 14.6 0.1 1.2 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family PE PF00934.20 gi|435850489|ref|YP_007312075.1| - 0.092 13.1 0.1 0.52 10.7 0.0 2.0 2 0 0 2 2 2 0 PE family ATPase PF06745.13 gi|435850490|ref|YP_007312076.1| - 1.6e-80 269.7 0.8 1.7e-46 158.4 0.4 2.2 2 0 0 2 2 2 2 KaiC DnaB_C PF03796.15 gi|435850490|ref|YP_007312076.1| - 5e-10 39.1 0.0 0.00035 20.0 0.0 2.3 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain Rad51 PF08423.11 gi|435850490|ref|YP_007312076.1| - 6.3e-10 38.7 0.4 0.00076 18.8 0.0 2.4 2 0 0 2 2 2 2 Rad51 AAA_25 PF13481.6 gi|435850490|ref|YP_007312076.1| - 3.1e-07 30.1 0.2 0.0009 18.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain RecA PF00154.21 gi|435850490|ref|YP_007312076.1| - 3.8e-07 29.8 7.5 0.00057 19.4 0.1 3.1 3 0 0 3 3 3 2 recA bacterial DNA recombination protein PAXNEB PF05625.11 gi|435850490|ref|YP_007312076.1| - 1.9e-06 27.3 3.2 0.00069 18.9 0.1 2.4 2 0 0 2 2 2 2 PAXNEB protein DUF2075 PF09848.9 gi|435850490|ref|YP_007312076.1| - 8.4e-06 25.3 0.1 0.053 12.8 0.1 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ATP-synt_ab PF00006.25 gi|435850490|ref|YP_007312076.1| - 0.00029 20.5 0.3 0.78 9.4 0.0 2.9 3 0 0 3 3 3 2 ATP synthase alpha/beta family, nucleotide-binding domain PhoH PF02562.16 gi|435850490|ref|YP_007312076.1| - 0.0024 17.4 1.3 0.4 10.1 0.0 3.0 3 0 0 3 3 3 1 PhoH-like protein Sigma54_activat PF00158.26 gi|435850490|ref|YP_007312076.1| - 0.003 17.3 0.1 0.52 10.0 0.1 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain GvpD PF07088.11 gi|435850490|ref|YP_007312076.1| - 0.0055 15.4 0.8 0.19 10.3 0.0 2.5 2 1 1 3 3 3 1 GvpD gas vesicle protein ResIII PF04851.15 gi|435850490|ref|YP_007312076.1| - 0.006 16.6 0.1 0.44 10.5 0.1 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit IstB_IS21 PF01695.17 gi|435850490|ref|YP_007312076.1| - 0.0079 15.9 0.2 1.2 8.9 0.0 2.4 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_7 PF12775.7 gi|435850490|ref|YP_007312076.1| - 0.01 15.4 0.3 0.37 10.3 0.1 2.7 2 0 0 2 2 2 0 P-loop containing dynein motor region DEAD PF00270.29 gi|435850490|ref|YP_007312076.1| - 0.012 15.4 0.2 1.5 8.5 0.1 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_5 PF07728.14 gi|435850490|ref|YP_007312076.1| - 0.077 13.0 0.5 1.2 9.1 0.0 2.8 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.6 gi|435850490|ref|YP_007312076.1| - 0.081 13.2 0.4 4 7.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|435850490|ref|YP_007312076.1| - 0.092 11.6 1.4 3.4 6.5 0.2 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_18 PF13238.6 gi|435850490|ref|YP_007312076.1| - 0.094 13.3 0.2 6.8 7.2 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.6 gi|435850490|ref|YP_007312076.1| - 0.11 12.2 0.8 4.2 7.0 0.1 2.9 3 0 0 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|435850490|ref|YP_007312076.1| - 0.11 12.8 1.8 2.2 8.6 0.0 2.6 2 0 0 2 2 2 0 AAA ATPase domain T2SSE PF00437.20 gi|435850490|ref|YP_007312076.1| - 0.14 11.2 2.9 0.96 8.4 0.1 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein DAP3 PF10236.9 gi|435850490|ref|YP_007312076.1| - 0.18 10.9 0.0 9.4 5.3 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_30 PF13604.6 gi|435850490|ref|YP_007312076.1| - 0.2 11.3 2.2 1.2 8.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|435850490|ref|YP_007312076.1| - 1 9.8 5.1 70 3.8 1.2 3.2 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|435850490|ref|YP_007312076.1| - 6.6 6.6 6.6 18 5.1 0.9 2.9 3 0 0 3 3 2 0 P-loop containing region of AAA domain GATase PF00117.28 gi|435850491|ref|YP_007312077.1| - 1.1e-37 129.7 0.0 1.2e-37 129.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|435850491|ref|YP_007312077.1| - 2.5e-12 47.0 2.2 9.8e-11 41.8 0.8 2.8 1 1 1 2 2 2 1 Peptidase C26 SRP54 PF00448.22 gi|435850492|ref|YP_007312078.1| - 9.5e-70 234.2 0.0 1.8e-69 233.3 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|435850492|ref|YP_007312078.1| - 3.1e-26 91.9 1.5 3.1e-26 91.9 1.5 2.6 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|435850492|ref|YP_007312078.1| - 7.6e-20 70.9 1.1 1.5e-19 70.0 0.2 2.1 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain cobW PF02492.19 gi|435850492|ref|YP_007312078.1| - 2.3e-06 27.3 0.2 2.9e-05 23.8 0.2 2.5 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|435850492|ref|YP_007312078.1| - 2.8e-05 24.2 0.0 0.00015 21.8 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|435850492|ref|YP_007312078.1| - 0.00031 19.8 0.1 0.01 14.9 0.0 2.3 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 gi|435850492|ref|YP_007312078.1| - 0.00046 19.5 0.0 0.00096 18.5 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_24 PF13479.6 gi|435850492|ref|YP_007312078.1| - 0.00056 19.7 0.0 0.002 17.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain 6PF2K PF01591.18 gi|435850492|ref|YP_007312078.1| - 0.00074 18.9 0.0 0.0016 17.8 0.0 1.5 1 0 0 1 1 1 1 6-phosphofructo-2-kinase TFIIA_gamma_N PF02268.16 gi|435850492|ref|YP_007312078.1| - 0.0028 17.6 0.1 0.019 14.9 0.1 2.4 2 0 0 2 2 2 1 Transcription initiation factor IIA, gamma subunit, helical domain AAA_33 PF13671.6 gi|435850492|ref|YP_007312078.1| - 0.0057 16.8 0.1 0.03 14.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|435850492|ref|YP_007312078.1| - 0.0069 16.7 0.0 0.022 15.0 0.0 1.9 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|435850492|ref|YP_007312078.1| - 0.012 15.5 0.0 0.032 14.1 0.0 1.7 1 0 0 1 1 1 0 Adenylylsulphate kinase ATP_bind_1 PF03029.17 gi|435850492|ref|YP_007312078.1| - 0.016 15.0 0.0 0.06 13.1 0.0 2.0 2 0 0 2 2 1 0 Conserved hypothetical ATP binding protein MobB PF03205.14 gi|435850492|ref|YP_007312078.1| - 0.016 15.1 0.0 0.037 13.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Thymidylate_kin PF02223.17 gi|435850492|ref|YP_007312078.1| - 0.017 14.8 0.0 0.052 13.2 0.0 1.8 1 0 0 1 1 1 0 Thymidylate kinase TrwB_AAD_bind PF10412.9 gi|435850492|ref|YP_007312078.1| - 0.021 13.8 0.0 0.038 12.9 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_18 PF13238.6 gi|435850492|ref|YP_007312078.1| - 0.023 15.2 0.0 0.075 13.6 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|435850492|ref|YP_007312078.1| - 0.028 14.7 0.1 0.059 13.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_31 PF13614.6 gi|435850492|ref|YP_007312078.1| - 0.029 14.3 0.0 3.1 7.7 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|435850492|ref|YP_007312078.1| - 0.036 14.4 0.1 0.07 13.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain LpxK PF02606.14 gi|435850492|ref|YP_007312078.1| - 0.037 13.1 0.0 0.075 12.1 0.0 1.4 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase MMR_HSR1 PF01926.23 gi|435850492|ref|YP_007312078.1| - 0.04 14.0 0.8 0.54 10.4 0.3 2.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|435850492|ref|YP_007312078.1| - 0.045 13.6 0.4 1.5 8.7 0.0 2.6 2 0 0 2 2 2 0 NTPase AAA_30 PF13604.6 gi|435850492|ref|YP_007312078.1| - 0.049 13.3 0.1 0.14 11.9 0.0 1.8 2 1 0 2 2 1 0 AAA domain PduV-EutP PF10662.9 gi|435850492|ref|YP_007312078.1| - 0.081 12.7 0.9 0.3 10.8 0.6 2.2 1 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation G-alpha PF00503.20 gi|435850492|ref|YP_007312078.1| - 0.086 12.0 0.0 0.31 10.2 0.0 1.8 1 1 0 1 1 1 0 G-protein alpha subunit KTI12 PF08433.10 gi|435850492|ref|YP_007312078.1| - 0.1 12.0 0.0 0.25 10.8 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF4919 PF16266.5 gi|435850492|ref|YP_007312078.1| - 0.13 12.2 1.6 2.7 7.9 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4919) AAA_16 PF13191.6 gi|435850492|ref|YP_007312078.1| - 0.16 12.3 0.0 0.38 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.6 gi|435850492|ref|YP_007312078.1| - 0.19 12.1 2.9 5.8 7.3 0.0 3.3 4 0 0 4 4 4 0 AAA domain AAA_25 PF13481.6 gi|435850492|ref|YP_007312078.1| - 0.61 9.6 2.5 31 4.1 0.0 3.0 3 1 1 4 4 4 0 AAA domain Usp PF00582.26 gi|435850493|ref|YP_007312079.1| - 3.1e-30 105.5 0.5 4.9e-30 104.9 0.5 1.3 1 0 0 1 1 1 1 Universal stress protein family AIRC PF00731.20 gi|435850493|ref|YP_007312079.1| - 0.05 13.2 0.8 1.1 8.8 0.3 2.2 2 0 0 2 2 2 0 AIR carboxylase PGM_PMM_I PF02878.16 gi|435850493|ref|YP_007312079.1| - 0.058 13.1 0.0 0.45 10.2 0.0 2.1 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DUF4959 PF16323.5 gi|435850493|ref|YP_007312079.1| - 0.083 13.2 0.0 0.28 11.5 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4959) DUF2072 PF09845.9 gi|435850494|ref|YP_007312080.1| - 3.3e-44 150.3 0.1 4e-44 150.1 0.1 1.1 1 0 0 1 1 1 1 Zn-ribbon containing protein zf-TFIIB PF13453.6 gi|435850494|ref|YP_007312080.1| - 0.04 13.3 0.4 0.04 13.3 0.4 2.2 1 1 1 2 2 2 0 Transcription factor zinc-finger AnfO_nitrog PF09582.10 gi|435850494|ref|YP_007312080.1| - 0.089 12.1 0.1 0.2 11.0 0.1 1.7 1 1 0 1 1 1 0 Iron only nitrogenase protein AnfO (AnfO_nitrog) DUF4776 PF16003.5 gi|435850494|ref|YP_007312080.1| - 0.1 11.6 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) VIT1 PF01988.19 gi|435850494|ref|YP_007312080.1| - 0.24 11.2 0.0 0.26 11.1 0.0 1.1 1 0 0 1 1 1 0 VIT family zf-ACC PF17848.1 gi|435850494|ref|YP_007312080.1| - 0.96 9.6 3.4 29 4.8 0.3 2.7 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain DUF1624 PF07786.12 gi|435850495|ref|YP_007312081.1| - 4e-70 235.8 16.2 4.8e-70 235.6 16.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.22 gi|435850495|ref|YP_007312081.1| - 2.1e-08 33.6 30.0 0.00022 20.4 14.8 2.2 1 1 1 2 2 2 2 Acyltransferase family OpgC_C PF10129.9 gi|435850495|ref|YP_007312081.1| - 0.0054 15.7 8.6 0.0054 15.7 8.6 2.7 2 2 0 2 2 2 2 OpgC protein DUF418 PF04235.12 gi|435850495|ref|YP_007312081.1| - 0.016 15.2 0.8 0.016 15.2 0.8 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF418) IMS PF00817.20 gi|435850496|ref|YP_007312082.1| - 4.3e-45 153.4 0.0 6e-45 152.9 0.0 1.2 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 gi|435850496|ref|YP_007312082.1| - 1.9e-18 67.3 0.1 3.7e-18 66.3 0.1 1.5 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|435850496|ref|YP_007312082.1| - 3.6e-10 39.6 0.1 1e-09 38.2 0.1 1.8 1 0 0 1 1 1 1 IMS family HHH motif DUF4332 PF14229.6 gi|435850496|ref|YP_007312082.1| - 0.00034 20.8 0.0 0.00059 20.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.8 gi|435850496|ref|YP_007312082.1| - 0.0024 18.1 0.0 0.0055 16.9 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus HHH_5 PF14520.6 gi|435850496|ref|YP_007312082.1| - 0.0027 18.3 0.0 0.0093 16.6 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|435850496|ref|YP_007312082.1| - 0.089 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda PGPGW PF09656.10 gi|435850497|ref|YP_007312083.1| - 0.69 9.5 5.9 1.3 8.6 5.9 1.4 1 0 0 1 1 1 0 Putative transmembrane protein (PGPGW) Ribosomal_S17e PF00833.18 gi|435850498|ref|YP_007312084.1| - 7.4e-15 54.9 1.4 7.9e-15 54.9 1.4 1.0 1 0 0 1 1 1 1 Ribosomal S17 DHDPS PF00701.22 gi|435850499|ref|YP_007312085.1| - 7.7e-94 313.6 0.3 9.2e-94 313.4 0.3 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PA PF02225.22 gi|435850499|ref|YP_007312085.1| - 0.0049 16.9 2.1 0.35 10.9 0.0 3.1 2 1 1 3 3 3 1 PA domain MDD_C PF18376.1 gi|435850499|ref|YP_007312085.1| - 0.0099 15.6 0.1 1.3 8.8 0.0 2.2 2 0 0 2 2 2 2 Mevalonate 5-diphosphate decarboxylase C-terminal domain DapB_C PF05173.14 gi|435850500|ref|YP_007312086.1| - 2.2e-45 153.6 0.2 3.1e-45 153.1 0.2 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|435850500|ref|YP_007312086.1| - 6.7e-32 110.2 1.7 1.1e-31 109.5 1.7 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus MM_CoA_mutase PF01642.22 gi|435850500|ref|YP_007312086.1| - 0.021 13.4 0.1 0.027 13.0 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl-CoA mutase 3Beta_HSD PF01073.19 gi|435850500|ref|YP_007312086.1| - 0.032 13.3 1.2 0.066 12.2 1.2 1.6 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family PyrI PF01948.18 gi|435850501|ref|YP_007312087.1| - 5.4e-32 109.9 2.7 7.5e-32 109.4 2.7 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|435850501|ref|YP_007312087.1| - 9.9e-18 63.8 5.3 9.9e-18 63.8 5.3 1.7 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain TF_Zn_Ribbon PF08271.12 gi|435850501|ref|YP_007312087.1| - 0.036 13.6 0.1 0.076 12.5 0.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding OTCace_N PF02729.21 gi|435850502|ref|YP_007312088.1| - 6.6e-49 165.7 0.0 2.7e-48 163.8 0.0 1.8 1 1 1 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|435850502|ref|YP_007312088.1| - 1.7e-31 109.4 0.0 2.7e-31 108.8 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF4154 PF13689.6 gi|435850502|ref|YP_007312088.1| - 0.18 12.0 0.0 0.56 10.4 0.0 1.8 2 0 0 2 2 2 0 YfiR/HmsC-like RraA-like PF03737.15 gi|435850503|ref|YP_007312089.1| - 2.9e-42 144.4 2.8 2.9e-42 144.4 2.8 1.8 2 0 0 2 2 2 1 Aldolase/RraA OMPdecase PF00215.24 gi|435850503|ref|YP_007312089.1| - 6.7e-12 45.5 4.5 1.2e-11 44.6 4.5 1.5 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NMO PF03060.15 gi|435850503|ref|YP_007312089.1| - 7e-06 25.7 5.8 9.6e-06 25.2 5.8 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase PEP_mutase PF13714.6 gi|435850503|ref|YP_007312089.1| - 2.3e-05 24.0 2.8 0.0041 16.6 0.2 2.5 1 1 1 2 2 2 2 Phosphoenolpyruvate phosphomutase His_biosynth PF00977.21 gi|435850503|ref|YP_007312089.1| - 0.00023 20.7 0.4 0.00023 20.7 0.4 2.0 2 0 0 2 2 2 1 Histidine biosynthesis protein DUF561 PF04481.12 gi|435850503|ref|YP_007312089.1| - 0.00099 18.3 2.4 0.0023 17.1 0.7 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF561) Dus PF01207.17 gi|435850503|ref|YP_007312089.1| - 0.0047 16.1 0.6 0.013 14.7 0.2 2.0 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) HMGL-like PF00682.19 gi|435850503|ref|YP_007312089.1| - 0.005 16.4 0.8 0.017 14.7 0.1 2.0 1 1 1 2 2 2 1 HMGL-like TMP-TENI PF02581.17 gi|435850503|ref|YP_007312089.1| - 0.0055 16.1 2.9 0.014 14.7 1.5 2.3 2 1 0 2 2 2 1 Thiamine monophosphate synthase DUF3983 PF13137.6 gi|435850503|ref|YP_007312089.1| - 0.17 11.7 3.0 0.19 11.6 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3983) Arc_PepC_II PF06847.11 gi|435850504|ref|YP_007312090.1| - 1e-30 106.1 4.1 4.3e-30 104.1 0.0 2.6 2 1 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|435850504|ref|YP_007312090.1| - 3.5e-13 49.9 5.3 3.5e-13 49.9 5.3 2.0 2 1 1 3 3 3 1 Type IV leader peptidase family CbiN PF02553.15 gi|435850504|ref|YP_007312090.1| - 0.075 13.0 0.8 0.18 11.8 0.8 1.7 1 0 0 1 1 1 0 Cobalt transport protein component CbiN RQC PF09382.10 gi|435850506|ref|YP_007312092.1| - 1.4e-30 105.4 0.1 1.4e-29 102.1 0.1 2.6 2 1 0 2 2 2 1 RQC domain Helicase_C PF00271.31 gi|435850506|ref|YP_007312092.1| - 4e-22 78.7 0.0 1.8e-18 66.9 0.0 3.4 3 0 0 3 3 3 2 Helicase conserved C-terminal domain HRDC PF00570.23 gi|435850506|ref|YP_007312092.1| - 4.7e-22 77.7 0.0 1.2e-21 76.4 0.0 1.8 1 0 0 1 1 1 1 HRDC domain DEAD PF00270.29 gi|435850506|ref|YP_007312092.1| - 5.1e-20 72.0 0.0 3.1e-19 69.4 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase RecQ_Zn_bind PF16124.5 gi|435850506|ref|YP_007312092.1| - 1.9e-15 57.4 3.5 5.7e-15 55.8 3.5 1.9 1 0 0 1 1 1 1 RecQ zinc-binding Helicase_Sgs1 PF11408.8 gi|435850506|ref|YP_007312092.1| - 0.00031 20.7 0.0 0.00076 19.5 0.0 1.6 1 0 0 1 1 1 1 Sgs1 RecQ helicase zf-CXXC PF02008.20 gi|435850506|ref|YP_007312092.1| - 0.072 13.1 0.7 0.18 11.9 0.7 1.7 1 0 0 1 1 1 0 CXXC zinc finger domain GMP_synt_C PF00958.22 gi|435850507|ref|YP_007312093.1| - 8.4e-30 102.7 0.0 1.7e-29 101.7 0.0 1.6 1 1 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|435850507|ref|YP_007312093.1| - 1e-09 37.9 0.0 0.00032 19.9 0.0 2.2 2 0 0 2 2 2 2 NAD synthase QueC PF06508.13 gi|435850507|ref|YP_007312093.1| - 4.3e-05 23.1 0.0 0.00083 18.9 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|435850507|ref|YP_007312093.1| - 0.00022 20.1 0.0 0.022 13.6 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase ThiI PF02568.14 gi|435850507|ref|YP_007312093.1| - 0.037 13.6 0.0 0.16 11.5 0.0 2.0 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 gi|435850507|ref|YP_007312093.1| - 0.088 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Asparagine synthase PAPS_reduct PF01507.19 gi|435850507|ref|YP_007312093.1| - 0.092 12.8 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Arginosuc_synth PF00764.19 gi|435850507|ref|YP_007312093.1| - 0.15 11.3 0.1 0.28 10.4 0.0 1.4 2 0 0 2 2 2 0 Arginosuccinate synthase TFIID_NTD2 PF04494.15 gi|435850507|ref|YP_007312093.1| - 0.2 11.9 0.0 0.67 10.2 0.0 1.8 2 0 0 2 2 2 0 WD40 associated region in TFIID subunit, NTD2 domain Radical_SAM PF04055.21 gi|435850508|ref|YP_007312094.1| - 2.4e-06 28.0 0.0 3.9e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|435850508|ref|YP_007312094.1| - 0.011 15.7 0.0 0.082 12.9 0.0 2.1 2 0 0 2 2 2 0 Radical_SAM C-terminal domain Rubredoxin PF00301.20 gi|435850508|ref|YP_007312094.1| - 0.097 12.7 0.2 0.23 11.5 0.2 1.5 1 0 0 1 1 1 0 Rubredoxin UPF0547 PF10571.9 gi|435850508|ref|YP_007312094.1| - 0.97 9.6 4.2 8 6.6 0.1 2.9 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 AA_kinase PF00696.28 gi|435850509|ref|YP_007312095.1| - 1.6e-42 145.7 7.3 1.9e-42 145.6 7.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family RNaseH_like PF04308.12 gi|435850509|ref|YP_007312095.1| - 0.019 14.9 0.2 0.043 13.7 0.2 1.5 1 0 0 1 1 1 0 Ribonuclease H-like MC1 PF05854.11 gi|435850510|ref|YP_007312096.1| - 5.3e-42 142.0 1.3 6e-42 141.9 1.3 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 Flg_new PF09479.10 gi|435850510|ref|YP_007312096.1| - 0.04 14.1 0.1 0.056 13.6 0.1 1.3 1 0 0 1 1 1 0 Listeria-Bacteroides repeat domain (List_Bact_rpt) GCHY-1 PF02649.14 gi|435850511|ref|YP_007312097.1| - 3.3e-81 272.6 5.0 3.7e-81 272.4 5.0 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF2098 PF09871.9 gi|435850512|ref|YP_007312098.1| - 9.3e-24 83.6 0.4 1.1e-23 83.4 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) NTP_transf_2 PF01909.23 gi|435850513|ref|YP_007312099.1| - 0.00023 21.4 0.0 0.00056 20.2 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain Pro-kuma_activ PF09286.11 gi|435850513|ref|YP_007312099.1| - 0.056 13.7 0.0 0.95 9.8 0.0 2.3 2 0 0 2 2 2 0 Pro-kumamolisin, activation domain Peptidase_M20 PF01546.28 gi|435850514|ref|YP_007312100.1| - 2.9e-32 112.1 0.1 3.5e-32 111.8 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|435850514|ref|YP_007312100.1| - 1.7e-11 44.0 0.0 3.1e-11 43.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Acetyltransf_10 PF13673.7 gi|435850515|ref|YP_007312101.1| - 1.9e-17 63.4 0.0 2e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|435850515|ref|YP_007312101.1| - 9.3e-15 54.9 0.0 1.1e-14 54.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|435850515|ref|YP_007312101.1| - 2e-13 50.5 0.1 2.9e-13 50.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|435850515|ref|YP_007312101.1| - 1e-05 25.7 0.1 1.2e-05 25.5 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|435850515|ref|YP_007312101.1| - 5.3e-05 23.1 0.0 7.6e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|435850515|ref|YP_007312101.1| - 0.00011 22.2 0.0 0.00018 21.6 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|435850515|ref|YP_007312101.1| - 0.00012 22.8 0.0 0.00013 22.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|435850515|ref|YP_007312101.1| - 0.00022 21.0 0.0 0.00025 20.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_13 PF13880.6 gi|435850515|ref|YP_007312101.1| - 0.0022 17.9 0.0 0.0057 16.6 0.0 1.7 2 0 0 2 2 2 1 ESCO1/2 acetyl-transferase Acetyltransf_15 PF17013.5 gi|435850515|ref|YP_007312101.1| - 0.078 12.4 0.0 0.1 12.1 0.0 1.3 1 1 0 1 1 1 0 Putative acetyl-transferase Acetyltransf_7 PF13508.7 gi|435850516|ref|YP_007312102.1| - 2.3e-15 56.7 0.2 3.4e-15 56.2 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|435850516|ref|YP_007312102.1| - 1.1e-14 54.7 0.1 1.4e-14 54.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|435850516|ref|YP_007312102.1| - 1.1e-10 41.5 0.1 1.5e-10 41.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|435850516|ref|YP_007312102.1| - 1.8e-07 31.4 0.4 6.1e-07 29.7 0.4 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|435850516|ref|YP_007312102.1| - 1.1e-06 28.7 0.0 1.5e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|435850516|ref|YP_007312102.1| - 7.6e-06 26.0 0.1 0.00019 21.5 0.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|435850516|ref|YP_007312102.1| - 0.00085 19.5 0.0 0.001 19.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|435850516|ref|YP_007312102.1| - 0.0035 18.0 0.0 0.0051 17.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain CCG PF02754.16 gi|435850518|ref|YP_007312104.1| - 6.3e-34 116.0 2.5 4.5e-21 74.8 0.8 2.3 2 0 0 2 2 2 2 Cysteine-rich domain DUF2024 PF09630.10 gi|435850518|ref|YP_007312104.1| - 0.15 12.0 0.2 0.3 11.0 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2024) Fer4_8 PF13183.6 gi|435850519|ref|YP_007312105.1| - 3.3e-11 43.5 10.3 4.2e-11 43.1 9.4 1.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435850519|ref|YP_007312105.1| - 9.4e-10 38.5 6.9 2e-09 37.4 6.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435850519|ref|YP_007312105.1| - 4.4e-09 36.4 9.6 7.9e-09 35.5 9.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435850519|ref|YP_007312105.1| - 1.4e-08 35.1 11.0 2.5e-08 34.3 11.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435850519|ref|YP_007312105.1| - 9.3e-07 29.3 23.7 8e-05 23.2 14.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435850519|ref|YP_007312105.1| - 8.6e-06 25.8 5.7 1.6e-05 24.9 5.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435850519|ref|YP_007312105.1| - 3.8e-05 23.5 9.0 0.0024 17.9 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|435850519|ref|YP_007312105.1| - 0.00029 20.5 12.5 0.0071 16.1 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|435850519|ref|YP_007312105.1| - 0.0067 16.6 8.7 0.019 15.1 0.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435850519|ref|YP_007312105.1| - 0.019 15.9 14.2 0.68 10.9 14.3 2.4 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|435850519|ref|YP_007312105.1| - 0.022 15.2 2.6 0.022 15.2 2.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|435850519|ref|YP_007312105.1| - 0.027 14.2 6.8 0.25 11.1 1.0 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.7 gi|435850519|ref|YP_007312105.1| - 0.097 12.8 1.2 0.097 12.8 1.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|435850519|ref|YP_007312105.1| - 0.57 11.1 13.8 0.97 10.3 1.2 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435850519|ref|YP_007312105.1| - 0.67 11.0 17.9 0.54 11.3 3.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain SCIFF PF13165.6 gi|435850519|ref|YP_007312105.1| - 0.88 9.6 7.6 0.23 11.4 0.6 2.5 2 0 0 2 2 2 0 Six-cysteine peptide SCIFF Fer4_15 PF13459.6 gi|435850519|ref|YP_007312105.1| - 0.98 10.2 6.8 3.2 8.6 1.5 2.6 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|435850519|ref|YP_007312105.1| - 2.7 8.6 8.3 17 6.0 0.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Gln-synt_C PF00120.24 gi|435850520|ref|YP_007312106.1| - 3.5e-134 447.2 0.0 4.1e-134 446.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|435850520|ref|YP_007312106.1| - 3.6e-30 103.5 0.0 6.8e-30 102.6 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|435850520|ref|YP_007312106.1| - 5.2e-07 29.5 0.0 3.6e-06 26.8 0.0 2.2 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain GATase_6 PF13522.6 gi|435850521|ref|YP_007312107.1| - 8.4e-13 48.7 0.0 1.9e-10 41.0 0.0 2.2 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.21 gi|435850521|ref|YP_007312107.1| - 2.1e-10 39.9 0.6 5.1e-08 32.0 0.1 2.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.6 gi|435850521|ref|YP_007312107.1| - 3.8e-09 36.5 0.0 0.00096 19.1 0.0 2.3 2 0 0 2 2 2 2 Glutamine amidotransferase domain DUF2619 PF10942.8 gi|435850521|ref|YP_007312107.1| - 0.14 12.3 0.1 0.35 11.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2619) Glu_synthase PF01645.17 gi|435850522|ref|YP_007312108.1| - 5.9e-135 450.1 0.0 9.4e-135 449.5 0.0 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|435850522|ref|YP_007312108.1| - 1e-14 54.7 0.0 3.4e-07 30.0 0.0 2.4 2 1 0 2 2 2 2 Glutamate synthase central domain Fer4_10 PF13237.6 gi|435850522|ref|YP_007312108.1| - 8.2e-09 35.5 17.9 2.2e-05 24.5 13.7 3.0 2 1 1 3 3 3 3 4Fe-4S dicluster domain FMN_dh PF01070.18 gi|435850522|ref|YP_007312108.1| - 1.2e-08 34.4 6.7 1.8e-07 30.6 2.3 3.0 3 0 0 3 3 3 1 FMN-dependent dehydrogenase NMO PF03060.15 gi|435850522|ref|YP_007312108.1| - 1.6e-08 34.4 2.2 1.4e-07 31.3 3.2 1.9 2 0 0 2 2 2 1 Nitronate monooxygenase Fer4 PF00037.27 gi|435850522|ref|YP_007312108.1| - 5.7e-08 32.3 20.0 6.3e-06 25.8 1.4 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435850522|ref|YP_007312108.1| - 5.7e-08 33.2 16.4 2.9e-06 27.8 12.2 2.9 2 1 0 2 2 2 1 4Fe-4S dicluster domain IMPDH PF00478.25 gi|435850522|ref|YP_007312108.1| - 1.9e-07 30.5 9.2 7.7e-07 28.4 5.1 2.8 2 1 1 3 3 3 1 IMP dehydrogenase / GMP reductase domain Fer4_9 PF13187.6 gi|435850522|ref|YP_007312108.1| - 2.1e-07 31.0 16.4 1.9e-06 27.9 12.0 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435850522|ref|YP_007312108.1| - 4.8e-07 30.6 10.7 5.5e-05 24.0 0.3 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|435850522|ref|YP_007312108.1| - 8.1e-07 28.9 23.3 1.5e-05 24.8 2.4 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|435850522|ref|YP_007312108.1| - 2.9e-06 27.3 10.5 2.9e-06 27.3 10.5 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435850522|ref|YP_007312108.1| - 2.9e-05 24.5 10.0 0.071 13.7 0.5 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435850522|ref|YP_007312108.1| - 0.00053 19.9 11.1 0.0035 17.4 1.8 3.8 4 0 0 4 4 3 2 4Fe-4S binding domain DHO_dh PF01180.21 gi|435850522|ref|YP_007312108.1| - 0.00062 19.1 2.8 0.0051 16.1 2.8 2.1 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|435850522|ref|YP_007312108.1| - 0.0068 15.9 0.3 0.013 15.0 0.3 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Fer4_8 PF13183.6 gi|435850522|ref|YP_007312108.1| - 0.028 14.8 18.2 0.63 10.5 3.1 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|435850522|ref|YP_007312108.1| - 1.6 9.6 16.5 0.23 12.2 2.0 3.1 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|435850522|ref|YP_007312108.1| - 3.7 8.4 14.3 3 8.7 1.2 3.2 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435850522|ref|YP_007312108.1| - 7.8 7.3 26.9 1 10.0 3.8 4.1 4 0 0 4 4 4 0 4Fe-4S binding domain GXGXG PF01493.19 gi|435850523|ref|YP_007312109.1| - 1.3e-35 122.8 10.4 1.6e-35 122.5 10.4 1.1 1 0 0 1 1 1 1 GXGXG motif FrhB_FdhB_C PF04432.13 gi|435850524|ref|YP_007312110.1| - 9.5e-37 126.2 0.0 1.6e-36 125.5 0.0 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|435850524|ref|YP_007312110.1| - 2e-19 69.5 0.0 3.9e-19 68.6 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_10 PF13237.6 gi|435850524|ref|YP_007312110.1| - 4.4e-06 26.7 9.3 4.4e-06 26.7 9.3 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|435850524|ref|YP_007312110.1| - 6.9e-06 25.7 5.2 6.9e-06 25.7 5.2 3.3 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435850524|ref|YP_007312110.1| - 2.4e-05 24.8 12.6 3e-05 24.5 9.5 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435850524|ref|YP_007312110.1| - 6.1e-05 22.9 4.7 6.1e-05 22.9 4.7 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435850524|ref|YP_007312110.1| - 0.00016 21.8 11.9 0.0004 20.5 9.3 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435850524|ref|YP_007312110.1| - 0.00022 21.5 17.5 0.021 15.3 1.4 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|435850524|ref|YP_007312110.1| - 0.0012 18.8 4.0 0.0012 18.8 4.0 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|435850524|ref|YP_007312110.1| - 0.02 15.8 16.0 1.2 10.1 13.5 3.1 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|435850524|ref|YP_007312110.1| - 0.36 11.4 9.1 0.96 10.0 1.6 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|435850524|ref|YP_007312110.1| - 0.39 10.9 15.6 1.5 9.1 11.4 3.0 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435850524|ref|YP_007312110.1| - 1.1 9.9 12.7 0.63 10.6 2.4 2.9 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|435850524|ref|YP_007312110.1| - 6.3 7.3 16.7 0.98 9.9 3.1 2.7 2 1 2 4 4 3 0 4Fe-4S dicluster domain Gln-synt_C PF00120.24 gi|435850526|ref|YP_007312112.1| - 1.8e-130 435.0 0.0 2.1e-130 434.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|435850526|ref|YP_007312112.1| - 1.5e-32 111.2 0.0 4.3e-32 109.7 0.0 1.9 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|435850526|ref|YP_007312112.1| - 0.0013 18.6 0.0 0.0034 17.2 0.0 1.8 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain HTH_24 PF13412.6 gi|435850528|ref|YP_007312114.1| - 0.00013 21.4 0.1 0.00038 20.0 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|435850528|ref|YP_007312114.1| - 0.00057 19.8 0.3 0.0052 16.7 0.0 2.4 2 0 0 2 2 2 1 MarR family Stevor PF17410.2 gi|435850528|ref|YP_007312114.1| - 0.0027 17.3 0.1 0.0046 16.5 0.1 1.3 1 0 0 1 1 1 1 Subtelomeric Variable Open Reading frame HTH_27 PF13463.6 gi|435850528|ref|YP_007312114.1| - 0.022 15.3 0.0 0.24 11.9 0.0 2.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain Ac76 PF05814.11 gi|435850528|ref|YP_007312114.1| - 0.035 14.1 0.1 0.1 12.6 0.1 1.7 1 0 0 1 1 1 0 Orf76 (Ac76) TrmB PF01978.19 gi|435850528|ref|YP_007312114.1| - 0.14 12.0 0.0 0.42 10.5 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HemY_N PF07219.13 gi|435850528|ref|YP_007312114.1| - 0.17 12.1 0.0 0.36 11.1 0.0 1.5 1 0 0 1 1 1 0 HemY protein N-terminus CARDB PF07705.11 gi|435850529|ref|YP_007312115.1| - 6.6e-08 32.8 11.2 0.018 15.3 0.5 3.4 2 1 0 3 3 3 3 CARDB NPCBM_assoc PF10633.9 gi|435850529|ref|YP_007312115.1| - 3.7e-07 30.3 2.3 0.043 14.1 0.1 4.9 3 2 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF4625 PF15418.6 gi|435850529|ref|YP_007312115.1| - 1.6e-05 25.1 0.1 0.00032 20.9 0.0 2.7 2 1 0 2 2 2 1 Domain of unknown function (DUF4625) DUF11 PF01345.18 gi|435850529|ref|YP_007312115.1| - 3e-05 24.3 6.4 0.25 11.7 1.1 3.8 3 1 0 3 3 3 2 Domain of unknown function DUF11 DUF4469 PF14734.6 gi|435850529|ref|YP_007312115.1| - 0.0051 17.0 2.4 0.64 10.2 0.1 3.4 3 0 0 3 3 3 1 Domain of unknown function (DUF4469) with IG-like fold CBM77 PF18283.1 gi|435850529|ref|YP_007312115.1| - 0.016 15.6 6.7 0.068 13.5 1.8 2.7 2 0 0 2 2 2 0 Carbohydrate binding module 77 TRAP_beta PF05753.14 gi|435850529|ref|YP_007312115.1| - 0.02 14.3 1.6 0.12 11.8 0.4 2.5 2 1 1 3 3 3 0 Translocon-associated protein beta (TRAPB) Rieske PF00355.26 gi|435850530|ref|YP_007312116.1| - 6.4e-21 74.1 0.0 7.4e-21 73.9 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|435850530|ref|YP_007312116.1| - 2.6e-10 40.2 0.0 2.9e-10 40.0 0.0 1.0 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Imm35 PF15567.6 gi|435850530|ref|YP_007312116.1| - 0.015 15.4 0.0 0.32 11.2 0.0 2.0 1 1 1 2 2 2 0 Immunity protein 35 Rieske PF00355.26 gi|435850531|ref|YP_007312117.1| - 1.9e-18 66.2 0.0 2.3e-18 65.9 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|435850531|ref|YP_007312117.1| - 6.7e-16 58.1 0.0 7.9e-16 57.9 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Glutaredoxin PF00462.24 gi|435850532|ref|YP_007312118.1| - 1.1e-09 38.4 0.1 1.4e-09 38.0 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.6 gi|435850532|ref|YP_007312118.1| - 0.0017 18.8 0.0 0.002 18.5 0.0 1.2 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF1462 PF07315.11 gi|435850532|ref|YP_007312118.1| - 0.0063 16.8 0.0 0.0072 16.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1462) GST_N_2 PF13409.6 gi|435850532|ref|YP_007312118.1| - 0.075 13.3 0.0 0.075 13.3 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain FeThRed_B PF02943.15 gi|435850533|ref|YP_007312119.1| - 2.1e-29 101.7 1.8 2.4e-29 101.5 1.8 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain PAS PF00989.25 gi|435850534|ref|YP_007312120.1| - 9.4e-50 167.4 1.7 2.3e-14 53.3 0.0 5.3 5 0 0 5 5 5 4 PAS fold PAS_9 PF13426.7 gi|435850534|ref|YP_007312120.1| - 8.8e-47 157.7 6.0 8.1e-12 45.3 0.0 5.5 5 0 0 5 5 5 5 PAS domain PAS_4 PF08448.10 gi|435850534|ref|YP_007312120.1| - 2.4e-37 127.5 0.0 5.2e-11 42.8 0.0 5.3 5 0 0 5 5 5 5 PAS fold PAS_8 PF13188.7 gi|435850534|ref|YP_007312120.1| - 4.6e-35 119.1 0.1 1.1e-09 38.0 0.0 4.9 5 0 0 5 5 4 4 PAS domain HATPase_c PF02518.26 gi|435850534|ref|YP_007312120.1| - 2.5e-34 118.1 0.5 8.7e-34 116.4 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|435850534|ref|YP_007312120.1| - 9.8e-30 102.7 0.4 2e-12 47.2 0.1 5.6 5 0 0 5 5 5 5 PAS fold HisKA PF00512.25 gi|435850534|ref|YP_007312120.1| - 2.1e-17 62.9 1.2 3e-16 59.2 0.0 3.2 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|435850534|ref|YP_007312120.1| - 2e-06 27.7 0.0 5.3e-06 26.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|435850534|ref|YP_007312120.1| - 0.005 16.7 0.0 0.016 15.1 0.0 2.0 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|435850534|ref|YP_007312120.1| - 0.033 14.1 0.0 0.24 11.4 0.0 2.3 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain H_kinase_N PF12282.8 gi|435850534|ref|YP_007312120.1| - 0.055 13.4 0.2 0.14 12.1 0.2 1.6 1 0 0 1 1 1 0 Signal transduction histidine kinase N6_Mtase PF02384.16 gi|435850535|ref|YP_007312121.1| - 9.9e-68 228.7 0.0 1.4e-67 228.2 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|435850535|ref|YP_007312121.1| - 1.9e-14 54.4 0.0 1.5e-13 51.5 0.0 2.4 1 1 0 1 1 1 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|435850535|ref|YP_007312121.1| - 9.4e-05 22.2 0.2 0.0016 18.1 0.2 2.6 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|435850535|ref|YP_007312121.1| - 0.046 13.3 0.1 0.39 10.2 0.1 2.4 2 1 0 2 2 2 0 Methyltransferase small domain FMN_red PF03358.15 gi|435850536|ref|YP_007312122.1| - 3.4e-27 95.1 0.0 4.8e-27 94.6 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|435850536|ref|YP_007312122.1| - 3.3e-15 56.3 0.0 4.8e-15 55.8 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|435850536|ref|YP_007312122.1| - 0.0027 18.0 0.0 0.14 12.3 0.0 2.3 2 0 0 2 2 2 1 Flavodoxin domain Methylase_S PF01420.19 gi|435850537|ref|YP_007312123.1| - 3.4e-30 105.5 0.9 4.2e-14 53.1 0.1 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain DUF501 PF04417.12 gi|435850537|ref|YP_007312123.1| - 0.08 12.8 0.9 0.46 10.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF501) Heme_oxygenase PF01126.20 gi|435850537|ref|YP_007312123.1| - 0.11 12.3 0.6 0.2 11.4 0.6 1.4 1 0 0 1 1 1 0 Heme oxygenase Rax2 PF12768.7 gi|435850537|ref|YP_007312123.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 Cortical protein marker for cell polarity DnaT PF17948.1 gi|435850537|ref|YP_007312123.1| - 0.16 11.7 0.0 27 4.5 0.0 2.9 2 0 0 2 2 2 0 DnaT DNA-binding domain HATPase_c_4 PF13749.6 gi|435850538|ref|YP_007312124.1| - 1.1e-19 70.3 0.0 2.8e-19 69.0 0.0 1.7 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal AlbA_2 PF04326.14 gi|435850538|ref|YP_007312124.1| - 4.7e-16 59.2 0.2 1.3e-15 57.8 0.0 1.9 2 0 0 2 2 2 1 Putative DNA-binding domain HTH_24 PF13412.6 gi|435850538|ref|YP_007312124.1| - 2e-09 36.9 1.7 1.5e-08 34.0 0.3 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding FaeA PF04703.12 gi|435850538|ref|YP_007312124.1| - 0.0091 16.3 0.0 0.032 14.6 0.0 1.9 2 0 0 2 2 2 1 FaeA-like protein MarR_2 PF12802.7 gi|435850538|ref|YP_007312124.1| - 0.022 14.7 0.0 0.07 13.0 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_Crp_2 PF13545.6 gi|435850538|ref|YP_007312124.1| - 0.034 14.1 0.0 0.14 12.1 0.0 2.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain BLACT_WH PF17778.1 gi|435850538|ref|YP_007312124.1| - 0.33 11.0 0.8 0.75 9.8 0.1 1.9 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain EcoEI_R_C PF08463.10 gi|435850539|ref|YP_007312125.1| - 1.4e-50 171.7 7.0 1.6e-50 171.5 1.9 2.8 3 0 0 3 3 3 1 EcoEI R protein C-terminal ResIII PF04851.15 gi|435850539|ref|YP_007312125.1| - 6.7e-42 143.4 0.0 1.5e-41 142.2 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SWI2_SNF2 PF18766.1 gi|435850539|ref|YP_007312125.1| - 2.6e-21 76.4 0.0 6e-21 75.1 0.0 1.6 1 0 0 1 1 1 1 SWI2/SNF2 ATPase DEAD PF00270.29 gi|435850539|ref|YP_007312125.1| - 2.6e-10 40.3 0.0 2.1e-09 37.4 0.0 2.6 2 1 0 2 2 2 1 DEAD/DEAH box helicase HSDR_N PF04313.14 gi|435850539|ref|YP_007312125.1| - 3.6e-07 30.3 1.9 2.2e-05 24.5 0.0 3.6 3 1 1 4 4 4 1 Type I restriction enzyme R protein N terminus (HSDR_N) Helicase_C PF00271.31 gi|435850539|ref|YP_007312125.1| - 0.0064 16.8 0.0 0.022 15.1 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain FtsK_SpoIIIE PF01580.18 gi|435850539|ref|YP_007312125.1| - 0.058 12.7 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family Zot PF05707.12 gi|435850539|ref|YP_007312125.1| - 0.067 12.8 0.3 19 4.8 0.0 3.3 3 0 0 3 3 3 0 Zonular occludens toxin (Zot) AAA_22 PF13401.6 gi|435850539|ref|YP_007312125.1| - 0.19 12.0 0.3 2.5 8.4 0.0 3.0 3 1 0 3 3 3 0 AAA domain N6_N4_Mtase PF01555.18 gi|435850540|ref|YP_007312126.1| - 1.9e-31 109.6 2.2 2.6e-31 109.2 2.2 1.2 1 0 0 1 1 1 1 DNA methylase MTS PF05175.14 gi|435850540|ref|YP_007312126.1| - 0.053 13.1 0.0 2.2 7.8 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase small domain Intron_maturas2 PF01348.21 gi|435850540|ref|YP_007312126.1| - 0.065 13.2 0.9 4.1 7.4 0.0 2.4 2 0 0 2 2 2 0 Type II intron maturase N6-adenineMlase PF10237.9 gi|435850540|ref|YP_007312126.1| - 0.071 12.9 0.1 0.13 12.1 0.1 1.6 1 1 0 1 1 1 0 Probable N6-adenine methyltransferase NRD1_2 PF01995.16 gi|435850541|ref|YP_007312127.1| - 1.9e-92 308.9 1.6 2.3e-92 308.6 1.6 1.1 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|435850541|ref|YP_007312127.1| - 9.2e-30 102.4 1.5 9.2e-30 102.4 1.5 2.0 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain Imm7 PF15585.6 gi|435850541|ref|YP_007312127.1| - 0.056 13.7 0.2 0.19 12.1 0.1 1.8 2 0 0 2 2 2 0 Immunity protein 7 NMT1_2 PF13379.6 gi|435850541|ref|YP_007312127.1| - 0.078 12.7 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 NMT1-like family Pyridoxal_deC PF00282.19 gi|435850541|ref|YP_007312127.1| - 0.1 11.3 0.0 0.17 10.5 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain DUF3303 PF11746.8 gi|435850542|ref|YP_007312128.1| - 2.1e-07 31.1 0.0 2.5e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3303) AglB_L1 PF18079.1 gi|435850543|ref|YP_007312129.1| - 9.9e-06 25.8 0.5 0.065 13.5 0.2 2.2 2 0 0 2 2 2 2 Archaeal glycosylation protein B long peripheral domain Big_6 PF17936.1 gi|435850543|ref|YP_007312129.1| - 0.013 15.8 0.8 0.99 9.7 0.1 3.0 2 2 1 3 3 3 0 Bacterial Ig domain Big_3 PF07523.12 gi|435850543|ref|YP_007312129.1| - 0.031 14.6 0.5 0.098 13.0 0.1 2.1 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) Big_7 PF17957.1 gi|435850543|ref|YP_007312129.1| - 0.046 14.5 0.6 0.28 12.0 0.1 2.3 2 1 0 2 2 2 0 Bacterial Ig domain GH43_C PF16369.5 gi|435850543|ref|YP_007312129.1| - 0.16 12.6 0.4 1.1 10.0 0.1 2.1 1 1 1 2 2 2 0 C-terminal lipocalin-like domain Phasin PF05597.11 gi|435850544|ref|YP_007312130.1| - 5.2e-07 29.7 15.6 0.00026 21.0 2.7 2.5 1 1 2 3 3 3 2 Poly(hydroxyalcanoate) granule associated protein (phasin) BMFP PF04380.13 gi|435850544|ref|YP_007312130.1| - 0.0059 17.1 11.0 0.0073 16.8 9.4 2.0 1 1 1 2 2 2 1 Membrane fusogenic activity YfcL PF08891.11 gi|435850544|ref|YP_007312130.1| - 0.031 14.6 4.2 0.031 14.6 4.2 1.9 1 1 1 2 2 2 0 YfcL protein YchF-GTPase_C PF06071.13 gi|435850544|ref|YP_007312130.1| - 0.047 13.9 2.7 0.056 13.6 1.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF933) Allexi_40kDa PF05549.11 gi|435850544|ref|YP_007312130.1| - 0.2 11.1 7.5 0.22 11.0 7.5 1.1 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF87 PF01935.17 gi|435850544|ref|YP_007312130.1| - 0.59 10.2 8.9 0.68 10.0 8.9 1.0 1 0 0 1 1 1 0 Helicase HerA, central domain DUF932 PF06067.11 gi|435850544|ref|YP_007312130.1| - 1.2 8.9 6.6 1.9 8.2 6.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF932) DUF883 PF05957.13 gi|435850544|ref|YP_007312130.1| - 1.3 9.6 9.1 3.6 8.2 3.6 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Exonuc_VII_L PF02601.15 gi|435850544|ref|YP_007312130.1| - 3.7 7.0 9.9 4.4 6.8 9.9 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit LMBR1 PF04791.16 gi|435850544|ref|YP_007312130.1| - 4.6 6.0 7.1 5.3 5.8 7.1 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF4407 PF14362.6 gi|435850544|ref|YP_007312130.1| - 9.9 5.4 13.5 12 5.1 13.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ABC_tran PF00005.27 gi|435850545|ref|YP_007312131.1| - 9.7e-57 191.3 0.0 2e-27 96.3 0.0 2.7 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|435850545|ref|YP_007312131.1| - 2.2e-10 40.8 2.6 0.0019 18.1 0.0 4.0 4 0 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|435850545|ref|YP_007312131.1| - 1.9e-09 37.6 1.0 0.00016 21.7 0.1 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_29 PF13555.6 gi|435850545|ref|YP_007312131.1| - 1.6e-08 34.1 3.3 0.0026 17.4 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|435850545|ref|YP_007312131.1| - 6.9e-08 32.9 0.3 0.091 13.0 0.0 4.3 4 0 0 4 4 4 2 AAA domain SMC_N PF02463.19 gi|435850545|ref|YP_007312131.1| - 1.5e-07 31.1 0.8 0.015 14.8 0.0 4.0 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|435850545|ref|YP_007312131.1| - 3e-07 31.0 0.0 0.027 14.9 0.0 2.7 2 0 0 2 2 2 2 AAA ATPase domain AAA_15 PF13175.6 gi|435850545|ref|YP_007312131.1| - 1e-06 28.7 0.0 0.0014 18.4 0.0 2.3 1 1 1 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.6 gi|435850545|ref|YP_007312131.1| - 1.9e-06 28.0 0.3 0.035 14.3 0.0 4.3 3 2 0 3 3 3 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|435850545|ref|YP_007312131.1| - 1.2e-05 26.0 5.2 0.064 13.8 0.1 2.8 2 1 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|435850545|ref|YP_007312131.1| - 7.8e-05 23.2 0.5 0.09 13.3 0.0 3.4 3 1 0 3 3 2 1 AAA domain AAA_30 PF13604.6 gi|435850545|ref|YP_007312131.1| - 0.00014 21.7 1.5 0.57 9.9 0.0 3.1 4 0 0 4 4 3 2 AAA domain TniB PF05621.11 gi|435850545|ref|YP_007312131.1| - 0.00015 21.2 9.1 0.037 13.4 0.1 5.1 5 1 1 6 6 5 1 Bacterial TniB protein PRK PF00485.18 gi|435850545|ref|YP_007312131.1| - 0.00018 21.3 0.0 0.27 11.0 0.0 2.4 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family Zeta_toxin PF06414.12 gi|435850545|ref|YP_007312131.1| - 0.00019 20.8 0.0 0.14 11.4 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin NB-ARC PF00931.22 gi|435850545|ref|YP_007312131.1| - 0.00028 20.2 0.3 0.53 9.4 0.1 2.6 2 0 0 2 2 2 2 NB-ARC domain ATPase_2 PF01637.18 gi|435850545|ref|YP_007312131.1| - 0.00064 19.7 1.9 1.1 9.1 0.1 3.8 3 1 0 3 3 3 1 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|435850545|ref|YP_007312131.1| - 0.00064 19.3 0.1 1.3 8.5 0.0 3.6 4 0 0 4 4 3 1 AAA domain AAA_24 PF13479.6 gi|435850545|ref|YP_007312131.1| - 0.00065 19.5 0.2 0.96 9.1 0.1 2.6 2 0 0 2 2 2 2 AAA domain AAA PF00004.29 gi|435850545|ref|YP_007312131.1| - 0.0013 19.1 0.1 19 5.7 0.0 4.9 5 1 0 5 5 5 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.14 gi|435850545|ref|YP_007312131.1| - 0.0017 18.2 1.1 1 9.3 0.1 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B G-alpha PF00503.20 gi|435850545|ref|YP_007312131.1| - 0.0018 17.5 0.9 0.25 10.4 0.0 2.6 2 1 0 2 2 2 1 G-protein alpha subunit cobW PF02492.19 gi|435850545|ref|YP_007312131.1| - 0.0028 17.3 0.8 1.6 8.3 0.0 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|435850545|ref|YP_007312131.1| - 0.0032 17.5 0.2 9.9 6.2 0.0 3.8 4 0 0 4 4 4 0 AAA domain NACHT PF05729.12 gi|435850545|ref|YP_007312131.1| - 0.0037 17.2 4.1 0.75 9.7 0.3 2.5 2 0 0 2 2 2 2 NACHT domain Rad17 PF03215.15 gi|435850545|ref|YP_007312131.1| - 0.0041 17.1 0.0 0.72 9.7 0.0 2.6 2 0 0 2 2 2 1 Rad17 P-loop domain TsaE PF02367.17 gi|435850545|ref|YP_007312131.1| - 0.0046 17.0 0.3 0.29 11.1 0.1 2.5 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|435850545|ref|YP_007312131.1| - 0.0046 17.3 0.1 1 9.8 0.0 2.9 3 0 0 3 3 2 1 RNA helicase PduV-EutP PF10662.9 gi|435850545|ref|YP_007312131.1| - 0.0059 16.4 0.7 0.34 10.7 0.1 2.6 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation MeaB PF03308.16 gi|435850545|ref|YP_007312131.1| - 0.0074 15.3 0.1 0.18 10.8 0.0 2.2 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|435850545|ref|YP_007312131.1| - 0.0076 16.3 3.3 1.8 8.7 0.1 3.3 4 0 0 4 4 2 1 50S ribosome-binding GTPase KAP_NTPase PF07693.14 gi|435850545|ref|YP_007312131.1| - 0.0079 15.5 0.0 1.9 7.7 0.0 2.4 2 0 0 2 2 2 1 KAP family P-loop domain PhoH PF02562.16 gi|435850545|ref|YP_007312131.1| - 0.0084 15.6 0.2 6.9 6.1 0.0 3.3 3 0 0 3 3 3 0 PhoH-like protein AAA_33 PF13671.6 gi|435850545|ref|YP_007312131.1| - 0.0097 16.1 0.8 3.9 7.6 0.0 2.6 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|435850545|ref|YP_007312131.1| - 0.018 14.1 0.2 1.7 7.6 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein VirE PF05272.11 gi|435850545|ref|YP_007312131.1| - 0.018 14.7 0.2 0.49 10.1 0.0 2.3 2 0 0 2 2 2 0 Virulence-associated protein E APS_kinase PF01583.20 gi|435850545|ref|YP_007312131.1| - 0.019 14.9 0.1 8.6 6.2 0.0 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase ATPase PF06745.13 gi|435850545|ref|YP_007312131.1| - 0.021 14.2 1.1 11 5.3 0.0 3.2 3 0 0 3 3 3 0 KaiC DLIC PF05783.11 gi|435850545|ref|YP_007312131.1| - 0.022 13.6 0.8 2.2 7.0 0.1 2.4 2 1 0 2 2 2 0 Dynein light intermediate chain (DLIC) PIF1 PF05970.14 gi|435850545|ref|YP_007312131.1| - 0.022 14.0 0.1 6.7 5.8 0.0 3.1 3 0 0 3 3 3 0 PIF1-like helicase AAA_28 PF13521.6 gi|435850545|ref|YP_007312131.1| - 0.023 14.9 0.3 12 6.1 0.0 2.8 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|435850545|ref|YP_007312131.1| - 0.023 14.8 3.7 3.3 7.8 0.2 2.7 2 1 0 2 2 2 0 Helicase HerA, central domain AAA_5 PF07728.14 gi|435850545|ref|YP_007312131.1| - 0.027 14.5 1.2 3.5 7.6 0.1 3.4 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|435850545|ref|YP_007312131.1| - 0.029 14.3 1.2 3.5 7.5 0.1 2.9 2 0 0 2 2 2 0 NTPase DUF1280 PF06918.14 gi|435850545|ref|YP_007312131.1| - 0.062 12.9 0.3 0.18 11.4 0.3 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1280) Mg_chelatase PF01078.21 gi|435850545|ref|YP_007312131.1| - 0.12 11.8 0.1 2.4 7.5 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Roc PF08477.13 gi|435850545|ref|YP_007312131.1| - 0.13 12.5 2.0 2.8 8.2 0.1 2.9 3 0 0 3 3 2 0 Ras of Complex, Roc, domain of DAPkinase MCM PF00493.23 gi|435850545|ref|YP_007312131.1| - 0.15 11.1 1.2 1.2 8.1 0.2 2.6 3 0 0 3 3 3 0 MCM P-loop domain dNK PF01712.19 gi|435850545|ref|YP_007312131.1| - 0.16 11.8 2.7 10 5.9 0.2 3.2 2 1 1 3 3 3 0 Deoxynucleoside kinase IstB_IS21 PF01695.17 gi|435850545|ref|YP_007312131.1| - 0.16 11.7 0.2 25 4.5 0.0 3.1 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_13 PF13166.6 gi|435850545|ref|YP_007312131.1| - 0.21 10.2 0.4 18 3.8 0.0 2.8 3 0 0 3 3 3 0 AAA domain Pox_A32 PF04665.12 gi|435850545|ref|YP_007312131.1| - 0.39 10.1 2.4 11 5.4 0.1 2.8 3 0 0 3 3 2 0 Poxvirus A32 protein AAA_17 PF13207.6 gi|435850545|ref|YP_007312131.1| - 3 8.3 5.2 31 5.0 0.1 3.6 4 0 0 4 4 3 0 AAA domain ABC_ATPase PF09818.9 gi|435850545|ref|YP_007312131.1| - 3 6.5 7.1 15 4.2 0.1 3.6 5 0 0 5 5 5 0 Predicted ATPase of the ABC class PcrB PF01884.17 gi|435850546|ref|YP_007312132.1| - 4.5e-68 229.1 0.5 5.3e-68 228.8 0.5 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|435850546|ref|YP_007312132.1| - 8.2e-06 25.4 0.1 1.6e-05 24.5 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein NanE PF04131.14 gi|435850546|ref|YP_007312132.1| - 0.00039 19.7 2.0 0.18 11.0 0.1 2.3 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase Trp_syntA PF00290.20 gi|435850546|ref|YP_007312132.1| - 0.025 13.4 0.3 0.62 8.9 0.1 2.1 2 0 0 2 2 2 0 Tryptophan synthase alpha chain TMP-TENI PF02581.17 gi|435850546|ref|YP_007312132.1| - 0.045 13.1 0.0 0.11 11.8 0.0 1.6 1 0 0 1 1 1 0 Thiamine monophosphate synthase G3P_antiterm PF04309.12 gi|435850546|ref|YP_007312132.1| - 0.047 13.1 0.7 0.09 12.2 0.1 1.7 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Dus PF01207.17 gi|435850546|ref|YP_007312132.1| - 0.071 12.2 0.3 0.3 10.2 0.1 1.9 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) DpaA_N PF16924.5 gi|435850546|ref|YP_007312132.1| - 0.094 12.8 0.1 0.18 11.9 0.1 1.5 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain ThiG PF05690.14 gi|435850546|ref|YP_007312132.1| - 0.18 11.0 7.5 0.09 12.1 0.6 2.5 2 1 1 3 3 3 0 Thiazole biosynthesis protein ThiG Ribosomal_L40e PF01020.17 gi|435850547|ref|YP_007312133.1| - 8.7e-06 25.5 8.6 1e-05 25.3 8.6 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.7 gi|435850547|ref|YP_007312133.1| - 0.00096 19.1 1.4 0.001 19.0 1.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|435850547|ref|YP_007312133.1| - 0.0012 18.4 0.8 0.0017 18.0 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.18 gi|435850547|ref|YP_007312133.1| - 0.012 15.0 3.5 0.016 14.6 3.5 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others TackOD1 PF18551.1 gi|435850547|ref|YP_007312133.1| - 0.015 14.9 1.4 0.017 14.8 1.4 1.0 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-ribbon_3 PF13248.6 gi|435850547|ref|YP_007312133.1| - 0.061 12.7 3.0 0.086 12.3 3.0 1.2 1 0 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|435850547|ref|YP_007312133.1| - 0.084 12.9 1.8 0.086 12.9 1.8 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DNA_RNApol_7kD PF03604.13 gi|435850547|ref|YP_007312133.1| - 0.19 11.4 9.5 0.093 12.4 7.0 1.7 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DHHC PF01529.20 gi|435850547|ref|YP_007312133.1| - 0.48 10.5 2.2 0.5 10.5 2.2 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase GatB_N PF02934.15 gi|435850548|ref|YP_007312134.1| - 4.7e-102 341.0 0.0 6e-102 340.7 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|435850548|ref|YP_007312134.1| - 2.2e-39 134.7 0.6 4e-39 133.9 0.6 1.4 1 0 0 1 1 1 1 GatB domain zf-Di19 PF05605.12 gi|435850548|ref|YP_007312134.1| - 0.08 13.3 0.5 0.19 12.0 0.2 1.7 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Pathogen_betaC1 PF09593.10 gi|435850548|ref|YP_007312134.1| - 0.097 12.6 0.9 0.23 11.4 0.2 2.0 2 0 0 2 2 2 0 Beta-satellite pathogenicity beta C1 protein Amidase PF01425.21 gi|435850549|ref|YP_007312135.1| - 2.5e-160 534.4 0.0 2.8e-160 534.2 0.0 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.15 gi|435850550|ref|YP_007312136.1| - 3.8e-19 68.7 0.5 5.4e-19 68.3 0.5 1.2 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit AXIN1_TNKS_BD PF16646.5 gi|435850550|ref|YP_007312136.1| - 0.039 14.9 0.0 0.064 14.2 0.0 1.4 1 0 0 1 1 1 0 Axin-1 tankyrase binding domain DUF2420 PF10336.9 gi|435850550|ref|YP_007312136.1| - 0.1 12.6 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2420) Methyltransf_11 PF08241.12 gi|435850551|ref|YP_007312137.1| - 9.3e-18 64.7 0.0 1.5e-17 64.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|435850551|ref|YP_007312137.1| - 4.2e-16 59.4 0.1 7.6e-16 58.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|435850551|ref|YP_007312137.1| - 1.9e-13 50.6 0.0 2.3e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|435850551|ref|YP_007312137.1| - 1.2e-12 47.9 0.0 1.6e-12 47.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|435850551|ref|YP_007312137.1| - 2e-12 47.0 0.0 2.3e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|435850551|ref|YP_007312137.1| - 9.9e-09 35.8 0.0 1.4e-08 35.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|435850551|ref|YP_007312137.1| - 9.8e-05 22.0 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|435850551|ref|YP_007312137.1| - 0.00017 21.5 0.0 0.00026 20.9 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase NodS PF05401.11 gi|435850551|ref|YP_007312137.1| - 0.0021 17.7 0.0 0.003 17.2 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.14 gi|435850551|ref|YP_007312137.1| - 0.0044 16.5 0.0 0.0069 15.8 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB FtsJ PF01728.19 gi|435850551|ref|YP_007312137.1| - 0.015 15.4 0.1 0.032 14.4 0.1 1.7 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_18 PF12847.7 gi|435850551|ref|YP_007312137.1| - 0.039 13.9 0.1 0.091 12.7 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain CheR PF01739.18 gi|435850551|ref|YP_007312137.1| - 0.11 12.0 0.0 4.4 6.7 0.0 2.4 2 0 0 2 2 2 0 CheR methyltransferase, SAM binding domain NNMT_PNMT_TEMT PF01234.17 gi|435850551|ref|YP_007312137.1| - 0.15 11.2 0.0 3.4 6.8 0.0 2.6 2 1 1 3 3 3 0 NNMT/PNMT/TEMT family NIR_SIR PF01077.22 gi|435850552|ref|YP_007312138.1| - 1.4e-34 118.9 0.7 2e-34 118.4 0.7 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|435850552|ref|YP_007312138.1| - 2e-19 69.2 0.0 5.4e-19 67.8 0.0 1.7 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|435850552|ref|YP_007312138.1| - 8.1e-13 47.6 14.3 4.5e-07 29.4 2.9 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|435850552|ref|YP_007312138.1| - 1.4e-07 31.3 13.5 1.3e-06 28.2 3.3 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435850552|ref|YP_007312138.1| - 2.9e-07 31.0 19.8 0.00064 20.3 1.0 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435850552|ref|YP_007312138.1| - 1.8e-06 28.0 20.8 0.00024 21.2 1.6 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435850552|ref|YP_007312138.1| - 8.9e-06 25.8 17.4 0.0021 18.2 0.5 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435850552|ref|YP_007312138.1| - 2.6e-05 24.2 25.3 0.00034 20.7 14.2 2.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|435850552|ref|YP_007312138.1| - 6.7e-05 23.1 8.1 6.7e-05 23.1 8.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435850552|ref|YP_007312138.1| - 0.001 19.0 11.9 0.0018 18.3 2.2 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|435850552|ref|YP_007312138.1| - 0.019 15.7 0.2 0.019 15.7 0.2 4.2 4 1 0 4 4 4 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|435850552|ref|YP_007312138.1| - 0.019 15.9 3.1 0.019 15.9 3.1 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|435850552|ref|YP_007312138.1| - 0.05 14.1 2.2 0.05 14.1 2.2 3.8 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|435850552|ref|YP_007312138.1| - 0.09 13.7 1.0 0.09 13.7 1.0 3.5 4 0 0 4 4 4 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|435850552|ref|YP_007312138.1| - 0.28 11.7 17.4 0.29 11.6 0.1 3.0 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435850552|ref|YP_007312138.1| - 1.1 9.8 17.8 1.9 9.1 1.3 2.7 2 1 0 2 2 2 0 4Fe-4S dicluster domain DDE_Tnp_1 PF01609.21 gi|435850553|ref|YP_007312139.1| - 1.2e-10 41.4 0.9 2.4e-10 40.4 0.9 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|435850553|ref|YP_007312139.1| - 0.00092 19.2 0.0 0.0026 17.7 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) PIN_5 PF08745.11 gi|435850554|ref|YP_007312140.1| - 3.1e-92 307.6 0.0 3.6e-92 307.4 0.0 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease Imm47 PF15573.6 gi|435850554|ref|YP_007312140.1| - 0.048 13.2 0.0 0.077 12.5 0.0 1.3 1 0 0 1 1 1 0 Immunity protein 47 Collectrin PF16959.5 gi|435850554|ref|YP_007312140.1| - 0.13 12.0 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Renal amino acid transporter UbiA PF01040.18 gi|435850555|ref|YP_007312141.1| - 4.4e-42 144.1 12.1 6.6e-42 143.5 12.0 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family NadA PF02445.16 gi|435850556|ref|YP_007312142.1| - 5.1e-119 396.9 5.1 5.8e-119 396.7 5.1 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Amidohydro_1 PF01979.20 gi|435850556|ref|YP_007312142.1| - 0.043 13.1 0.9 0.21 10.9 0.7 1.9 1 1 1 2 2 2 0 Amidohydrolase family DUF2046 PF09755.9 gi|435850556|ref|YP_007312142.1| - 0.077 12.2 0.4 0.13 11.5 0.4 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein H4 (DUF2046) DUF108 PF01958.18 gi|435850557|ref|YP_007312143.1| - 1.5e-35 121.4 0.6 2.4e-35 120.8 0.6 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|435850557|ref|YP_007312143.1| - 3.8e-23 82.4 0.1 6.1e-23 81.7 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|435850557|ref|YP_007312143.1| - 2.1e-06 28.6 0.1 3.6e-06 27.8 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|435850557|ref|YP_007312143.1| - 4.7e-06 27.1 0.4 1.2e-05 25.8 0.1 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.20 gi|435850557|ref|YP_007312143.1| - 7.4e-06 26.1 0.2 2e-05 24.7 0.1 1.8 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.24 gi|435850557|ref|YP_007312143.1| - 0.0015 19.0 0.0 0.0027 18.1 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|435850557|ref|YP_007312143.1| - 0.0021 17.5 0.1 0.0038 16.6 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|435850557|ref|YP_007312143.1| - 0.0026 18.0 0.3 0.0041 17.4 0.3 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Rossmann-like PF10727.9 gi|435850557|ref|YP_007312143.1| - 0.0047 16.8 0.1 0.012 15.5 0.1 1.7 1 1 0 1 1 1 1 Rossmann-like domain Shikimate_DH PF01488.20 gi|435850557|ref|YP_007312143.1| - 0.011 15.8 0.2 0.019 15.0 0.2 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 gi|435850557|ref|YP_007312143.1| - 0.018 15.2 0.1 0.028 14.6 0.1 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|435850557|ref|YP_007312143.1| - 0.04 13.9 0.0 0.076 13.0 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Gp_dh_N PF00044.24 gi|435850557|ref|YP_007312143.1| - 0.048 14.0 0.1 0.1 12.9 0.1 1.7 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|435850557|ref|YP_007312143.1| - 0.076 13.3 0.1 0.18 12.1 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain Disaggr_repeat PF06848.11 gi|435850559|ref|YP_007312145.1| - 5.5e-181 596.3 15.5 1.2e-90 302.0 4.7 2.6 2 0 0 2 2 2 2 Disaggregatase related repeat PKD PF00801.20 gi|435850559|ref|YP_007312145.1| - 1.8e-64 213.5 110.1 1.6e-10 40.7 7.5 9.1 9 0 0 9 9 9 7 PKD domain Disaggr_assoc PF08480.10 gi|435850559|ref|YP_007312145.1| - 3.9e-30 105.1 13.2 3.9e-30 105.1 13.2 2.4 3 0 0 3 3 3 1 Disaggregatase related Y_Y_Y PF07495.13 gi|435850559|ref|YP_007312145.1| - 3.7e-14 52.4 14.1 0.2 11.6 0.0 7.9 7 0 0 7 7 7 6 Y_Y_Y domain Beta_helix PF13229.6 gi|435850559|ref|YP_007312145.1| - 1.9e-13 50.6 37.8 1.3e-07 31.6 16.1 2.7 1 1 1 2 2 2 2 Right handed beta helix region DUF4625 PF15418.6 gi|435850559|ref|YP_007312145.1| - 2.2e-11 44.1 26.8 1.3 9.3 0.1 10.5 8 6 3 11 11 11 7 Domain of unknown function (DUF4625) TGFb_propeptide PF00688.18 gi|435850559|ref|YP_007312145.1| - 2.2e-05 24.3 0.0 11 5.7 0.0 4.2 4 0 0 4 4 4 1 TGF-beta propeptide Chitin_bind_4 PF00379.23 gi|435850559|ref|YP_007312145.1| - 0.00027 21.4 25.7 8.1 7.1 0.3 7.8 7 0 0 7 7 7 1 Insect cuticle protein DUF3912 PF13051.6 gi|435850559|ref|YP_007312145.1| - 0.00075 19.7 0.0 2e+02 2.3 0.0 6.4 7 0 0 7 7 7 0 Protein of unknown function (DUF3912) DUF5011 PF16403.5 gi|435850559|ref|YP_007312145.1| - 0.21 11.7 73.0 1.8 8.7 2.7 8.8 7 1 0 7 7 7 0 Domain of unknown function (DUF5011) ChitinaseA_N PF08329.10 gi|435850559|ref|YP_007312145.1| - 0.88 9.2 35.1 13 5.4 0.3 7.8 8 0 0 8 8 8 0 Chitinase A, N-terminal domain VWA PF00092.28 gi|435850561|ref|YP_007312147.1| - 1.3e-09 38.5 0.2 7.9e-09 36.0 0.1 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|435850561|ref|YP_007312147.1| - 8.7e-07 29.6 0.1 2.9e-06 27.9 0.1 1.9 1 0 0 1 1 1 1 von Willebrand factor type A domain CobT_C PF11775.8 gi|435850561|ref|YP_007312147.1| - 0.13 11.9 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT VWA domain FGE-sulfatase PF03781.16 gi|435850562|ref|YP_007312148.1| - 1.3e-51 175.7 3.6 7.1e-51 173.3 3.6 1.8 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 DUF1566 PF07603.11 gi|435850562|ref|YP_007312148.1| - 0.049 14.0 0.5 0.099 13.0 0.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1566) URO-D PF01208.17 gi|435850564|ref|YP_007312150.1| - 2.5e-78 263.6 0.0 4.6e-78 262.8 0.0 1.4 1 1 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) GAF_2 PF13185.6 gi|435850565|ref|YP_007312151.1| - 5.6e-43 146.6 0.0 1e-24 87.4 0.0 2.3 2 0 0 2 2 2 2 GAF domain HATPase_c PF02518.26 gi|435850565|ref|YP_007312151.1| - 3.8e-26 91.8 0.0 1.1e-25 90.3 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|435850565|ref|YP_007312151.1| - 2.5e-25 88.6 0.1 4.4e-17 62.1 0.1 2.6 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|435850565|ref|YP_007312151.1| - 1.4e-16 60.6 2.0 1e-10 41.8 0.2 2.8 2 0 0 2 2 2 2 PAS domain GAF PF01590.26 gi|435850565|ref|YP_007312151.1| - 1.4e-13 51.7 0.0 6.3e-09 36.6 0.0 2.4 2 0 0 2 2 2 2 GAF domain PAS PF00989.25 gi|435850565|ref|YP_007312151.1| - 2.9e-12 46.6 0.4 7.6e-06 25.9 0.1 2.8 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|435850565|ref|YP_007312151.1| - 2.1e-09 37.6 0.0 0.00015 21.9 0.0 2.7 2 0 0 2 2 2 2 PAS fold GAF_3 PF13492.6 gi|435850565|ref|YP_007312151.1| - 4e-05 24.0 0.0 0.09 13.1 0.0 2.7 2 1 0 2 2 2 2 GAF domain PAS_8 PF13188.7 gi|435850565|ref|YP_007312151.1| - 0.00023 21.1 0.0 0.0014 18.6 0.0 2.4 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 gi|435850565|ref|YP_007312151.1| - 0.00056 19.8 0.0 0.0016 18.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SpoVT_C PF15714.5 gi|435850565|ref|YP_007312151.1| - 0.0054 16.8 0.3 4.8 7.3 0.0 3.4 3 0 0 3 3 3 1 Stage V sporulation protein T C-terminal, transcription factor FtsA PF14450.6 gi|435850565|ref|YP_007312151.1| - 0.029 14.8 0.1 0.18 12.2 0.0 2.3 2 0 0 2 2 2 0 Cell division protein FtsA RACo_C_ter PF14574.6 gi|435850566|ref|YP_007312152.1| - 1.3e-72 244.0 4.0 5e-72 242.1 4.0 1.8 1 1 0 1 1 1 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|435850566|ref|YP_007312152.1| - 1.6e-12 47.4 0.1 1.9e-11 43.9 0.2 2.8 3 1 0 3 3 3 1 RACo middle region Fer4_21 PF14697.6 gi|435850566|ref|YP_007312152.1| - 5.6e-07 29.6 8.7 5.6e-07 29.6 8.7 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|435850566|ref|YP_007312152.1| - 9.2e-07 28.4 12.0 0.0014 18.4 3.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435850566|ref|YP_007312152.1| - 3.3e-06 27.6 10.9 6.6e-06 26.6 10.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435850566|ref|YP_007312152.1| - 3.4e-06 27.1 10.0 6.2e-06 26.3 10.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435850566|ref|YP_007312152.1| - 1.5e-05 25.8 8.3 0.012 16.6 1.2 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|435850566|ref|YP_007312152.1| - 0.0071 16.4 14.5 0.17 12.0 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|435850566|ref|YP_007312152.1| - 0.0079 16.6 8.6 0.047 14.2 0.9 2.4 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435850566|ref|YP_007312152.1| - 0.0081 16.3 12.2 0.15 12.2 13.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435850566|ref|YP_007312152.1| - 0.028 14.9 11.3 0.87 10.3 1.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|435850566|ref|YP_007312152.1| - 0.091 12.9 10.3 0.28 11.4 1.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|435850566|ref|YP_007312152.1| - 0.092 13.3 11.6 0.097 13.2 3.3 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|435850566|ref|YP_007312152.1| - 0.21 12.4 10.0 0.53 11.2 1.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435850566|ref|YP_007312152.1| - 0.48 11.5 16.5 0.75 10.9 4.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DUF1724 PF08350.10 gi|435850568|ref|YP_007312154.1| - 2.3e-17 62.9 0.8 5.1e-17 61.8 0.8 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_45 PF14947.6 gi|435850568|ref|YP_007312154.1| - 0.00063 19.7 0.1 0.0017 18.3 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|435850568|ref|YP_007312154.1| - 0.013 15.6 0.0 0.024 14.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|435850568|ref|YP_007312154.1| - 0.031 14.2 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF505 PF04458.12 gi|435850568|ref|YP_007312154.1| - 0.052 11.9 0.1 0.084 11.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HemN_C PF06969.16 gi|435850568|ref|YP_007312154.1| - 0.058 13.5 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain TrmB PF01978.19 gi|435850568|ref|YP_007312154.1| - 0.07 13.0 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PMSR PF01625.21 gi|435850569|ref|YP_007312155.1| - 1.4e-52 178.0 0.8 1e-31 110.2 0.0 2.0 1 1 1 2 2 2 2 Peptide methionine sulfoxide reductase Oxidored_FMN PF00724.20 gi|435850570|ref|YP_007312156.1| - 6.8e-44 150.5 0.0 1.3e-43 149.6 0.0 1.5 1 1 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Pyr_redox_2 PF07992.14 gi|435850570|ref|YP_007312156.1| - 5.3e-20 71.8 0.3 3.3e-17 62.6 0.2 2.6 1 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|435850570|ref|YP_007312156.1| - 4e-14 52.9 2.6 6.7e-06 26.6 0.2 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|435850570|ref|YP_007312156.1| - 6.3e-13 49.0 0.3 9e-06 25.5 0.2 3.0 3 0 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|435850570|ref|YP_007312156.1| - 2.1e-12 47.1 0.9 4.8e-08 33.1 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|435850570|ref|YP_007312156.1| - 3.2e-11 43.0 0.0 8.4e-07 28.4 0.0 2.7 3 0 0 3 3 3 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|435850570|ref|YP_007312156.1| - 2.7e-10 40.0 0.1 3e-05 23.4 0.0 3.7 3 1 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|435850570|ref|YP_007312156.1| - 4.6e-09 35.9 2.5 1e-05 24.8 0.6 2.3 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|435850570|ref|YP_007312156.1| - 8.4e-08 32.0 1.1 5.9e-07 29.2 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|435850570|ref|YP_007312156.1| - 1.5e-07 30.5 3.5 9e-07 27.9 0.5 2.3 2 0 0 2 2 2 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|435850570|ref|YP_007312156.1| - 1.1e-06 28.2 0.1 0.0025 17.2 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|435850570|ref|YP_007312156.1| - 5.1e-06 26.9 0.0 0.099 13.1 0.0 2.8 2 1 0 2 2 2 2 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|435850570|ref|YP_007312156.1| - 1.4e-05 25.0 1.8 0.032 14.1 0.0 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|435850570|ref|YP_007312156.1| - 7.6e-05 21.9 0.1 0.29 10.1 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Thi4 PF01946.17 gi|435850570|ref|YP_007312156.1| - 8.4e-05 21.9 0.1 0.048 12.9 0.0 2.3 2 0 0 2 2 2 2 Thi4 family FAD_binding_3 PF01494.19 gi|435850570|ref|YP_007312156.1| - 0.00011 21.6 1.1 0.17 11.1 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain ApbA PF02558.16 gi|435850570|ref|YP_007312156.1| - 0.00035 20.3 1.0 0.012 15.3 0.2 2.7 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA K_oxygenase PF13434.6 gi|435850570|ref|YP_007312156.1| - 0.00048 19.4 0.0 1 8.4 0.0 2.8 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) FMO-like PF00743.19 gi|435850570|ref|YP_007312156.1| - 0.0011 17.5 0.2 0.014 13.9 0.0 2.0 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like NAD_Gly3P_dh_N PF01210.23 gi|435850570|ref|YP_007312156.1| - 0.0029 17.6 0.2 0.042 13.8 0.0 2.4 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_9 PF13454.6 gi|435850570|ref|YP_007312156.1| - 0.0034 17.4 1.2 0.2 11.6 0.0 2.8 3 0 0 3 3 3 1 FAD-NAD(P)-binding Shikimate_DH PF01488.20 gi|435850570|ref|YP_007312156.1| - 0.0049 16.9 2.2 1.7 8.7 0.2 3.8 4 1 1 5 5 5 1 Shikimate / quinate 5-dehydrogenase ThiF PF00899.21 gi|435850570|ref|YP_007312156.1| - 0.0074 15.7 0.2 2.7 7.3 0.0 2.4 2 0 0 2 2 2 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|435850570|ref|YP_007312156.1| - 0.041 14.1 0.1 0.14 12.4 0.0 2.0 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain CCB1 PF12046.8 gi|435850570|ref|YP_007312156.1| - 0.13 11.6 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B TrkA_N PF02254.18 gi|435850570|ref|YP_007312156.1| - 0.22 11.8 1.6 18 5.6 0.3 3.1 3 0 0 3 3 3 0 TrkA-N domain Dus PF01207.17 gi|435850570|ref|YP_007312156.1| - 0.22 10.6 0.0 0.44 9.6 0.0 1.4 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) B12-binding PF02310.19 gi|435850571|ref|YP_007312157.1| - 3.4e-24 85.2 0.5 4.7e-24 84.7 0.5 1.2 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|435850571|ref|YP_007312157.1| - 2.2e-17 63.3 0.3 6e-17 61.9 0.0 1.9 2 0 0 2 2 2 1 B12 binding domain ANAPC8 PF04049.13 gi|435850571|ref|YP_007312157.1| - 0.16 12.0 0.2 0.35 10.9 0.2 1.6 1 0 0 1 1 1 0 Anaphase promoting complex subunit 8 / Cdc23 URO-D PF01208.17 gi|435850572|ref|YP_007312158.1| - 2.4e-78 263.7 2.0 2.6e-78 263.6 2.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Aldedh PF00171.22 gi|435850574|ref|YP_007312160.1| - 2.2e-90 303.4 0.0 2.5e-90 303.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|435850574|ref|YP_007312160.1| - 0.00046 19.4 0.0 0.00063 18.9 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) adh_short PF00106.25 gi|435850575|ref|YP_007312161.1| - 2e-37 128.5 0.0 3.8e-37 127.6 0.0 1.4 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|435850575|ref|YP_007312161.1| - 6.2e-22 78.3 0.0 8e-22 77.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|435850575|ref|YP_007312161.1| - 8.1e-07 29.1 0.0 1.2e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 KR domain ThiF PF00899.21 gi|435850575|ref|YP_007312161.1| - 0.019 14.3 2.3 0.054 12.8 0.0 2.0 2 0 0 2 2 2 0 ThiF family MeaB PF03308.16 gi|435850575|ref|YP_007312161.1| - 0.051 12.6 0.0 0.28 10.1 0.0 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Epimerase PF01370.21 gi|435850575|ref|YP_007312161.1| - 0.063 12.7 0.1 6.5 6.1 0.2 2.2 1 1 1 2 2 2 0 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|435850575|ref|YP_007312161.1| - 0.072 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain Tecti-min-caps PF09300.10 gi|435850575|ref|YP_007312161.1| - 0.2 11.8 0.3 0.46 10.6 0.1 1.8 2 0 0 2 2 2 0 Tectiviridae, minor capsid zf-P11 PF03854.14 gi|435850576|ref|YP_007312162.1| - 0.031 13.9 5.7 0.031 13.9 5.7 2.0 2 0 0 2 2 2 0 P-11 zinc finger Methyltransf_25 PF13649.6 gi|435850577|ref|YP_007312163.1| - 6.1e-18 65.3 0.0 1.9e-17 63.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435850577|ref|YP_007312163.1| - 8.2e-18 64.8 0.0 1.3e-17 64.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|435850577|ref|YP_007312163.1| - 4.4e-11 42.8 0.0 5.4e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|435850577|ref|YP_007312163.1| - 5.2e-10 39.1 0.0 8.4e-10 38.4 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.6 gi|435850577|ref|YP_007312163.1| - 9.9e-07 28.7 0.0 1.4e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|435850577|ref|YP_007312163.1| - 0.00049 19.5 0.0 0.00066 19.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|435850577|ref|YP_007312163.1| - 0.00054 19.9 0.0 0.0019 18.1 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_12 PF08242.12 gi|435850577|ref|YP_007312163.1| - 0.00066 20.4 0.0 0.0015 19.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|435850577|ref|YP_007312163.1| - 0.049 13.6 0.0 0.068 13.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.12 gi|435850577|ref|YP_007312163.1| - 0.087 12.6 0.0 0.2 11.4 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_29 PF03141.16 gi|435850577|ref|YP_007312163.1| - 0.11 11.0 0.0 0.14 10.7 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase AMP-binding PF00501.28 gi|435850578|ref|YP_007312164.1| - 1.5e-13 50.1 0.0 2e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Radical_SAM PF04055.21 gi|435850579|ref|YP_007312165.1| - 2.8e-18 66.8 0.2 2.8e-18 66.8 0.2 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|435850579|ref|YP_007312165.1| - 1.5e-05 25.3 0.2 1.5e-05 25.3 0.2 2.7 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|435850579|ref|YP_007312165.1| - 3e-05 24.1 0.1 3e-05 24.1 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain zinc_ribbon_10 PF10058.9 gi|435850580|ref|YP_007312166.1| - 0.034 13.9 0.1 0.93 9.3 0.0 2.3 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein PHD_2 PF13831.6 gi|435850580|ref|YP_007312166.1| - 0.058 13.0 1.2 0.67 9.6 0.3 2.2 2 0 0 2 2 2 0 PHD-finger ADK_lid PF05191.14 gi|435850580|ref|YP_007312166.1| - 0.074 13.1 0.3 9.3 6.3 0.0 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid zinc_ribbon_5 PF13719.6 gi|435850580|ref|YP_007312166.1| - 1.1 9.1 3.6 26 4.7 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain URO-D PF01208.17 gi|435850581|ref|YP_007312167.1| - 8.3e-37 127.1 0.0 1e-36 126.8 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) TehB PF03848.14 gi|435850582|ref|YP_007312168.1| - 0.034 13.6 0.2 0.037 13.4 0.2 1.0 1 0 0 1 1 1 0 Tellurite resistance protein TehB DUF1724 PF08350.10 gi|435850583|ref|YP_007312169.1| - 9.7e-22 76.9 0.4 1.7e-21 76.1 0.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|435850583|ref|YP_007312169.1| - 6.6e-05 22.7 0.1 0.00015 21.6 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|435850583|ref|YP_007312169.1| - 0.0015 18.5 2.6 0.0025 17.7 0.2 2.5 2 1 1 3 3 3 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|435850583|ref|YP_007312169.1| - 0.0038 17.3 0.0 0.0074 16.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|435850583|ref|YP_007312169.1| - 0.0077 16.4 0.2 0.02 15.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HemN_C PF06969.16 gi|435850583|ref|YP_007312169.1| - 0.079 13.0 0.1 0.45 10.6 0.0 2.2 2 0 0 2 2 2 0 HemN C-terminal domain MarR PF01047.22 gi|435850583|ref|YP_007312169.1| - 0.09 12.7 0.1 0.2 11.6 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|435850583|ref|YP_007312169.1| - 0.1 12.6 0.1 0.23 11.4 0.1 1.5 1 0 0 1 1 1 0 HTH domain TrmB PF01978.19 gi|435850583|ref|YP_007312169.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB QRPTase_C PF01729.19 gi|435850584|ref|YP_007312170.1| - 3.1e-59 199.5 3.2 3.9e-59 199.2 3.2 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|435850584|ref|YP_007312170.1| - 2.1e-20 72.6 0.0 5e-20 71.4 0.0 1.7 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain IMPDH PF00478.25 gi|435850584|ref|YP_007312170.1| - 2e-05 23.8 0.1 2.2e-05 23.7 0.1 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain Ribul_P_3_epim PF00834.19 gi|435850584|ref|YP_007312170.1| - 0.0038 16.6 0.1 0.0067 15.8 0.1 1.5 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.17 gi|435850584|ref|YP_007312170.1| - 0.03 13.7 0.2 0.059 12.7 0.2 1.5 1 0 0 1 1 1 0 Thiamine monophosphate synthase KDGP_aldolase PF07071.11 gi|435850584|ref|YP_007312170.1| - 0.098 12.4 0.7 0.17 11.7 0.7 1.3 1 0 0 1 1 1 0 KDGP aldolase DUF296 PF03479.15 gi|435850585|ref|YP_007312171.1| - 6e-18 65.2 0.0 7.1e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain Enolase_C PF00113.22 gi|435850586|ref|YP_007312172.1| - 2.8e-113 378.0 0.5 3.8e-113 377.6 0.5 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|435850586|ref|YP_007312172.1| - 2.5e-59 199.1 0.1 4.9e-59 198.2 0.1 1.5 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|435850586|ref|YP_007312172.1| - 1.3e-06 28.2 0.0 2.2e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like LysE PF01810.18 gi|435850587|ref|YP_007312173.1| - 3.8e-28 98.3 16.2 4.5e-28 98.0 16.2 1.0 1 0 0 1 1 1 1 LysE type translocator DUF5362 PF17319.2 gi|435850587|ref|YP_007312173.1| - 0.0067 16.3 0.1 0.0067 16.3 0.1 2.4 2 0 0 2 2 2 1 Family of unknown function (DUF5362) DUF1418 PF07214.12 gi|435850587|ref|YP_007312173.1| - 0.25 11.2 2.9 0.44 10.4 2.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1418) Pyrophosphatase PF00719.19 gi|435850588|ref|YP_007312174.1| - 4.6e-07 29.8 0.0 6.9e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Inorganic pyrophosphatase InPase PF18823.1 gi|435850588|ref|YP_007312174.1| - 0.0093 15.7 0.1 0.01 15.5 0.1 1.4 1 0 0 1 1 1 1 Inorganic Pyrophosphatase PAS PF00989.25 gi|435850589|ref|YP_007312175.1| - 5.6e-19 68.2 0.0 3.3e-08 33.5 0.0 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|435850589|ref|YP_007312175.1| - 1.7e-17 63.9 0.0 5.6e-17 62.3 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|435850589|ref|YP_007312175.1| - 7.6e-16 58.3 0.3 4.4e-07 30.1 0.1 3.0 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.12 gi|435850589|ref|YP_007312175.1| - 2e-10 40.8 0.0 4.3e-06 26.9 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|435850589|ref|YP_007312175.1| - 3.5e-09 36.9 0.0 1.4e-07 31.7 0.0 2.7 2 1 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|435850589|ref|YP_007312175.1| - 1.1e-08 34.9 0.1 0.0054 16.7 0.0 2.7 2 0 0 2 2 2 2 PAS domain HisKA PF00512.25 gi|435850589|ref|YP_007312175.1| - 1.4e-06 28.3 0.9 3.9e-06 26.8 0.2 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|435850589|ref|YP_007312175.1| - 0.00058 19.8 0.0 0.001 19.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|435850589|ref|YP_007312175.1| - 0.054 13.2 0.2 0.18 11.6 0.2 2.0 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_7 PF12860.7 gi|435850589|ref|YP_007312175.1| - 0.055 13.6 0.4 5.4 7.2 0.2 3.5 3 1 0 3 3 3 0 PAS fold MacB_PCD PF12704.7 gi|435850590|ref|YP_007312176.1| - 1.3e-26 94.1 1.6 1.3e-26 94.1 1.6 1.6 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|435850590|ref|YP_007312176.1| - 8.7e-12 45.4 6.3 8.7e-12 45.4 6.3 3.0 3 0 0 3 3 3 1 FtsX-like permease family Macscav_rec PF03523.13 gi|435850590|ref|YP_007312176.1| - 0.28 11.1 0.7 0.7 9.8 0.2 1.9 2 0 0 2 2 2 0 Macrophage scavenger receptor DUF3180 PF11377.8 gi|435850590|ref|YP_007312176.1| - 0.9 9.7 6.8 0.94 9.6 4.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3180) ABC_tran PF00005.27 gi|435850591|ref|YP_007312177.1| - 4.2e-35 121.2 0.0 5.8e-35 120.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435850591|ref|YP_007312177.1| - 1.7e-07 31.3 0.6 2.9e-05 24.0 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|435850591|ref|YP_007312177.1| - 2e-07 30.7 0.2 2.2e-05 24.0 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|435850591|ref|YP_007312177.1| - 0.0002 21.0 0.2 0.00043 20.0 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|435850591|ref|YP_007312177.1| - 0.0026 17.7 0.2 0.0052 16.7 0.2 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|435850591|ref|YP_007312177.1| - 0.0048 17.2 0.2 0.19 12.0 0.4 2.9 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|435850591|ref|YP_007312177.1| - 0.13 11.5 0.0 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_16 PF13191.6 gi|435850591|ref|YP_007312177.1| - 0.13 12.6 0.1 0.3 11.5 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain G-alpha PF00503.20 gi|435850591|ref|YP_007312177.1| - 0.16 11.1 0.0 0.18 11.0 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit NPCBM_assoc PF10633.9 gi|435850592|ref|YP_007312178.1| - 0.097 12.9 0.0 1.5 9.1 0.0 2.9 4 0 0 4 4 4 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|435850592|ref|YP_007312178.1| - 0.18 12.1 1.9 2.8 8.3 0.1 3.2 3 1 0 3 3 3 0 Domain of unknown function DUF11 OppC_N PF12911.7 gi|435850592|ref|YP_007312178.1| - 0.38 10.8 3.2 0.24 11.4 0.5 1.9 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C LPAM_1 PF08139.12 gi|435850592|ref|YP_007312178.1| - 1.4 9.6 4.0 3.6 8.3 4.0 1.7 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Chordopox_A13L PF05961.11 gi|435850592|ref|YP_007312178.1| - 1.8 8.9 4.4 1.4 9.2 0.6 2.6 3 0 0 3 3 3 0 Chordopoxvirus A13L protein Yip1 PF04893.17 gi|435850593|ref|YP_007312179.1| - 3.1e-30 105.1 17.5 3.8e-30 104.9 17.5 1.0 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.12 gi|435850593|ref|YP_007312179.1| - 7.1e-07 29.2 18.6 6.2e-06 26.1 18.6 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF1282) MtrF PF09472.10 gi|435850593|ref|YP_007312179.1| - 0.075 12.4 3.0 0.27 10.7 3.0 2.0 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) Flu_M2 PF00599.17 gi|435850593|ref|YP_007312179.1| - 0.11 12.6 0.1 0.11 12.6 0.1 2.1 2 1 0 2 2 2 0 Influenza Matrix protein (M2) Yip1 PF04893.17 gi|435850594|ref|YP_007312180.1| - 5.5e-23 81.6 14.8 6.7e-23 81.3 14.8 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.12 gi|435850594|ref|YP_007312180.1| - 0.07 12.9 12.8 0.27 11.0 12.8 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) DUF334 PF03904.13 gi|435850594|ref|YP_007312180.1| - 0.89 9.0 4.0 1.7 8.1 4.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF334) ABC_tran PF00005.27 gi|435850595|ref|YP_007312181.1| - 3.9e-34 118.1 0.0 5e-34 117.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|435850595|ref|YP_007312181.1| - 3.8e-07 29.8 0.1 0.011 15.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|435850595|ref|YP_007312181.1| - 8.6e-07 29.1 0.0 0.002 18.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|435850595|ref|YP_007312181.1| - 9.3e-05 22.7 0.1 0.0018 18.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|435850595|ref|YP_007312181.1| - 0.00051 19.7 0.1 0.0012 18.5 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|435850595|ref|YP_007312181.1| - 0.0013 18.7 0.0 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase G-alpha PF00503.20 gi|435850595|ref|YP_007312181.1| - 0.012 14.8 0.0 0.015 14.5 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_16 PF13191.6 gi|435850595|ref|YP_007312181.1| - 0.017 15.5 0.0 0.023 15.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|435850595|ref|YP_007312181.1| - 0.018 15.2 0.0 0.038 14.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|435850595|ref|YP_007312181.1| - 0.026 15.0 0.2 0.064 13.8 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|435850595|ref|YP_007312181.1| - 0.042 13.6 0.1 0.17 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|435850595|ref|YP_007312181.1| - 0.045 12.5 0.1 0.071 11.9 0.1 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein MMR_HSR1 PF01926.23 gi|435850595|ref|YP_007312181.1| - 0.05 13.7 0.0 0.13 12.3 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|435850595|ref|YP_007312181.1| - 0.076 12.2 0.3 0.32 10.1 0.1 1.8 2 0 0 2 2 2 0 NB-ARC domain AAA_25 PF13481.6 gi|435850595|ref|YP_007312181.1| - 0.084 12.4 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|435850595|ref|YP_007312181.1| - 0.13 12.1 0.0 0.39 10.6 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|435850595|ref|YP_007312181.1| - 0.17 11.6 0.0 0.38 10.4 0.0 1.5 2 0 0 2 2 2 0 AAA domain Cadherin-like PF12733.7 gi|435850596|ref|YP_007312182.1| - 0.00086 19.8 5.3 0.058 13.9 0.3 4.1 2 2 2 4 4 4 1 Cadherin-like beta sandwich domain CARDB PF07705.11 gi|435850596|ref|YP_007312182.1| - 0.0098 16.1 3.0 3.7 7.8 0.0 3.7 1 1 1 4 4 4 1 CARDB DUF4165 PF13752.6 gi|435850596|ref|YP_007312182.1| - 0.027 14.5 0.3 0.053 13.5 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4165) FixQ PF05545.11 gi|435850596|ref|YP_007312182.1| - 0.17 11.9 0.1 0.32 11.0 0.1 1.4 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ MacB_PCD PF12704.7 gi|435850597|ref|YP_007312183.1| - 9.2e-23 81.6 4.8 9.2e-23 81.6 4.8 2.0 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|435850597|ref|YP_007312183.1| - 2.1e-13 50.5 1.4 2.1e-13 50.5 1.4 3.1 3 0 0 3 3 3 2 FtsX-like permease family LRR_10 PF18805.1 gi|435850597|ref|YP_007312183.1| - 0.072 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Leucine-rich repeat Myc_target_1 PF15179.6 gi|435850597|ref|YP_007312183.1| - 1.1 9.2 3.4 0.41 10.5 0.2 1.8 2 0 0 2 2 2 0 Myc target protein 1 MacB_PCD PF12704.7 gi|435850598|ref|YP_007312184.1| - 2.5e-25 90.0 3.5 2.5e-25 90.0 3.5 2.1 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|435850598|ref|YP_007312184.1| - 4.7e-13 49.4 1.9 4.7e-13 49.4 1.9 3.3 3 0 0 3 3 3 2 FtsX-like permease family Sigma_reg_N PF13800.6 gi|435850598|ref|YP_007312184.1| - 0.31 11.4 3.0 15 5.9 0.0 2.8 2 0 0 2 2 2 0 Sigma factor regulator N-terminal YbjQ_1 PF01906.17 gi|435850599|ref|YP_007312185.1| - 1.1e-35 122.4 1.3 1.2e-35 122.2 1.3 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.8 gi|435850599|ref|YP_007312185.1| - 6.1e-05 23.4 0.7 0.042 14.3 0.1 2.1 1 1 1 2 2 2 2 Selenium binding protein Orn_Arg_deC_N PF02784.16 gi|435850600|ref|YP_007312186.1| - 4.3e-51 173.7 0.0 5.6e-51 173.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|435850600|ref|YP_007312186.1| - 7.7e-11 42.1 0.0 8.8e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DUF4918 PF16265.5 gi|435850600|ref|YP_007312186.1| - 0.015 14.9 0.0 0.04 13.4 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4918) EamA PF00892.20 gi|435850601|ref|YP_007312187.1| - 0.00012 22.3 6.7 0.00042 20.5 6.6 1.9 1 1 0 1 1 1 1 EamA-like transporter family META PF03724.16 gi|435850602|ref|YP_007312188.1| - 1.9e-16 59.9 0.0 2.5e-16 59.6 0.0 1.2 1 0 0 1 1 1 1 META domain DUF5640 PF18692.1 gi|435850602|ref|YP_007312188.1| - 0.00049 20.1 0.1 0.00083 19.3 0.1 1.5 1 1 0 1 1 1 1 Family of unknown function (DUF5640) Lipocalin_4 PF13648.6 gi|435850602|ref|YP_007312188.1| - 0.047 14.6 4.4 0.14 13.1 3.0 2.4 1 1 1 2 2 2 0 Lipocalin-like domain Disaggr_repeat PF06848.11 gi|435850603|ref|YP_007312189.1| - 8.3e-92 305.8 4.9 2.3e-91 304.4 4.9 1.8 1 0 0 1 1 1 1 Disaggregatase related repeat Disaggr_assoc PF08480.10 gi|435850603|ref|YP_007312189.1| - 7.8e-28 97.6 18.0 7.8e-28 97.6 18.0 2.4 3 0 0 3 3 3 1 Disaggregatase related Beta_helix PF13229.6 gi|435850603|ref|YP_007312189.1| - 1.9e-13 50.6 82.6 2.9e-07 30.5 22.0 3.0 1 1 2 3 3 3 3 Right handed beta helix region PKD PF00801.20 gi|435850603|ref|YP_007312189.1| - 4.3e-11 42.5 6.2 4.3e-11 42.5 6.2 3.8 4 0 0 4 4 4 1 PKD domain TGFb_propeptide PF00688.18 gi|435850603|ref|YP_007312189.1| - 0.059 13.1 0.0 9.1 5.9 0.0 2.2 2 0 0 2 2 2 0 TGF-beta propeptide DUF4625 PF15418.6 gi|435850603|ref|YP_007312189.1| - 0.096 12.9 1.9 1.5 9.0 0.2 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4625) MASE3 PF17159.4 gi|435850604|ref|YP_007312190.1| - 1.6e-82 276.5 29.9 1.6e-82 276.5 29.9 1.6 1 1 1 2 2 2 1 Membrane-associated sensor domain PAS_8 PF13188.7 gi|435850604|ref|YP_007312190.1| - 0.0051 16.8 0.0 0.0098 15.9 0.0 1.5 1 0 0 1 1 1 1 PAS domain HATPase_c PF02518.26 gi|435850605|ref|YP_007312191.1| - 5.2e-16 59.2 0.2 1.1e-15 58.1 0.1 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|435850605|ref|YP_007312191.1| - 3.8e-06 26.8 0.3 1.3e-05 25.2 0.1 1.9 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|435850605|ref|YP_007312191.1| - 2e-05 24.5 0.0 4.5e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|435850605|ref|YP_007312191.1| - 0.00014 21.7 1.0 0.00037 20.3 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRF PF08558.10 gi|435850605|ref|YP_007312191.1| - 0.0013 18.4 1.4 0.0019 17.9 1.4 1.1 1 0 0 1 1 1 1 Telomere repeat binding factor (TRF) SPOB_a PF14689.6 gi|435850605|ref|YP_007312191.1| - 0.0049 16.5 2.3 0.011 15.5 1.7 2.0 1 1 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA_4TM PF16926.5 gi|435850605|ref|YP_007312191.1| - 0.022 14.3 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase O-antigen_lig PF13425.6 gi|435850605|ref|YP_007312191.1| - 2.6 6.7 5.8 3.8 6.2 5.8 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Na_H_Exchanger PF00999.21 gi|435850606|ref|YP_007312192.1| - 2.5e-57 194.4 54.0 2.5e-57 194.4 54.0 1.4 2 0 0 2 2 2 1 Sodium/hydrogen exchanger family PHP_C PF13263.6 gi|435850608|ref|YP_007312194.1| - 0.0051 16.5 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|435850608|ref|YP_007312194.1| - 0.013 15.8 0.2 0.023 15.0 0.2 1.7 1 1 0 1 1 1 0 PHP domain PAC2 PF09754.9 gi|435850609|ref|YP_007312195.1| - 1.4e-51 175.6 0.0 1.6e-51 175.4 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Radical_SAM PF04055.21 gi|435850609|ref|YP_007312195.1| - 0.022 15.2 0.0 0.09 13.1 0.0 2.0 2 1 0 2 2 2 0 Radical SAM superfamily Nop10p PF04135.12 gi|435850610|ref|YP_007312196.1| - 1.3e-21 76.3 0.8 1.6e-21 76.1 0.8 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 gi|435850610|ref|YP_007312196.1| - 0.0044 16.5 0.9 0.0065 16.0 0.9 1.3 1 0 0 1 1 1 1 RecR protein PolC_DP2 PF03833.13 gi|435850610|ref|YP_007312196.1| - 0.055 11.3 0.2 0.046 11.6 0.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-ribbon_3 PF13248.6 gi|435850610|ref|YP_007312196.1| - 0.1 12.0 5.7 0.62 9.6 5.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Fer4_4 PF12800.7 gi|435850610|ref|YP_007312196.1| - 0.58 10.8 6.2 9 7.1 0.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain EIF_2_alpha PF07541.12 gi|435850611|ref|YP_007312197.1| - 1.9e-22 79.6 0.1 3.3e-22 78.8 0.1 1.3 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|435850611|ref|YP_007312197.1| - 2.2e-11 43.9 0.9 5.3e-11 42.7 0.5 1.9 2 0 0 2 2 2 1 S1 RNA binding domain Ribosomal_S27e PF01667.17 gi|435850612|ref|YP_007312198.1| - 5.1e-24 83.7 1.2 5.5e-24 83.6 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zf-C2H2_12 PF18658.1 gi|435850612|ref|YP_007312198.1| - 0.0034 16.9 0.1 0.0055 16.3 0.1 1.4 1 1 0 1 1 1 1 Zinc-finger C2H2-type Zn_Tnp_IS91 PF14319.6 gi|435850612|ref|YP_007312198.1| - 0.0077 16.2 0.2 0.0077 16.2 0.2 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain zf-BED PF02892.15 gi|435850612|ref|YP_007312198.1| - 0.012 15.6 5.0 0.015 15.4 0.5 2.0 1 1 1 2 2 2 0 BED zinc finger HypA PF01155.19 gi|435850612|ref|YP_007312198.1| - 0.016 15.2 0.5 0.017 15.1 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_6 PF14599.6 gi|435850612|ref|YP_007312198.1| - 0.044 13.8 2.2 0.093 12.8 1.9 1.7 2 1 1 3 3 3 0 Zinc-ribbon Sgf11 PF08209.11 gi|435850612|ref|YP_007312198.1| - 0.05 13.2 0.1 0.05 13.2 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Ribosomal_L44 PF00935.19 gi|435850613|ref|YP_007312199.1| - 7.6e-26 90.4 6.6 1.1e-25 89.9 6.6 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 zf-H2C2_2 PF13465.6 gi|435850613|ref|YP_007312199.1| - 0.052 14.0 5.7 3.6 8.2 0.2 2.5 2 0 0 2 2 2 0 Zinc-finger double domain zf-ribbon_3 PF13248.6 gi|435850613|ref|YP_007312199.1| - 0.07 12.6 2.3 3.3 7.2 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_ClpX PF06689.13 gi|435850613|ref|YP_007312199.1| - 0.17 11.8 4.3 6 6.8 0.4 2.2 2 0 0 2 2 2 0 ClpX C4-type zinc finger Sld5 PF05916.11 gi|435850614|ref|YP_007312200.1| - 0.07 13.6 1.5 0.16 12.5 1.0 1.8 2 0 0 2 2 2 0 GINS complex protein Prismane PF03063.20 gi|435850615|ref|YP_007312201.1| - 2.4e-162 541.2 0.0 2.7e-162 541.1 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family DNA_primase_S PF01896.19 gi|435850616|ref|YP_007312202.1| - 8.8e-26 91.0 0.0 1.5e-25 90.2 0.0 1.4 1 1 0 1 1 1 1 DNA primase small subunit HHH_5 PF14520.6 gi|435850616|ref|YP_007312202.1| - 9.2e-07 29.4 0.4 0.014 16.0 0.0 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix domain HHH PF00633.23 gi|435850616|ref|YP_007312202.1| - 0.032 14.1 0.0 0.19 11.7 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|435850616|ref|YP_007312202.1| - 0.095 13.3 0.2 0.31 11.6 0.1 1.9 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.7 gi|435850616|ref|YP_007312202.1| - 0.098 12.8 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif FbpA PF05833.11 gi|435850617|ref|YP_007312203.1| - 4.1e-94 315.9 0.8 5.3e-94 315.5 0.8 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|435850617|ref|YP_007312203.1| - 1.2e-25 90.2 0.2 8.1e-25 87.6 0.0 2.3 2 0 0 2 2 2 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|435850617|ref|YP_007312203.1| - 2.2e-05 24.6 0.0 9.7e-05 22.5 0.0 2.1 2 0 0 2 2 2 1 NFACT protein RNA binding domain eRF1_1 PF03463.15 gi|435850618|ref|YP_007312204.1| - 8.7e-26 90.4 0.4 1.5e-25 89.7 0.4 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|435850618|ref|YP_007312204.1| - 2.4e-21 76.3 0.1 6.1e-21 75.0 0.1 1.7 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|435850618|ref|YP_007312204.1| - 4.4e-10 40.0 0.1 9e-09 35.8 0.1 2.3 1 1 0 1 1 1 1 eRF1 domain 2 Gpr1_Fun34_YaaH PF01184.19 gi|435850619|ref|YP_007312205.1| - 1.1e-22 80.7 25.7 1.4e-22 80.4 25.7 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family WTF PF03303.13 gi|435850619|ref|YP_007312205.1| - 4.7 6.9 6.4 5.8 6.6 6.4 1.1 1 0 0 1 1 1 0 WTF protein DisA_N PF02457.16 gi|435850620|ref|YP_007312206.1| - 9.7e-23 80.0 0.2 2.2e-22 78.8 0.2 1.6 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding LigT_PEase PF02834.16 gi|435850621|ref|YP_007312207.1| - 3.3e-29 100.9 0.0 1.7e-16 60.1 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|435850621|ref|YP_007312207.1| - 8.4e-10 38.7 0.0 9.6e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|435850621|ref|YP_007312207.1| - 0.0051 16.7 0.0 0.007 16.3 0.0 1.3 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain ApbE PF02424.15 gi|435850622|ref|YP_007312208.1| - 9.7e-77 258.0 0.0 1.2e-76 257.7 0.0 1.1 1 0 0 1 1 1 1 ApbE family Cytochrome_C7 PF14522.6 gi|435850624|ref|YP_007312210.1| - 2.9e-05 24.0 36.8 0.0092 16.0 1.2 5.1 3 2 1 4 4 4 2 Cytochrome c7 and related cytochrome c Cytochrom_c3_2 PF14537.6 gi|435850624|ref|YP_007312210.1| - 3.5e-05 24.2 31.1 0.0097 16.3 0.4 5.3 4 1 0 4 4 4 2 Cytochrome c3 Cytochrom_CIII PF02085.16 gi|435850624|ref|YP_007312210.1| - 0.0089 16.4 33.8 0.62 10.4 4.5 5.3 4 1 1 5 5 5 3 Class III cytochrome C family MCR PF18509.1 gi|435850624|ref|YP_007312210.1| - 0.052 13.1 0.7 0.052 13.1 0.7 6.0 7 0 0 7 7 7 0 Magnetochrome domain EF-hand_5 PF13202.6 gi|435850624|ref|YP_007312210.1| - 0.099 12.2 0.2 0.39 10.3 0.0 2.0 2 0 0 2 2 2 0 EF hand DnaJ_CXXCXGXG PF00684.19 gi|435850624|ref|YP_007312210.1| - 0.15 12.5 0.3 0.15 12.5 0.3 4.0 4 1 0 4 4 4 0 DnaJ central domain RnfC_N PF13375.6 gi|435850625|ref|YP_007312211.1| - 6.1e-20 71.1 0.2 1.4e-19 69.9 0.2 1.6 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Complex1_51K PF01512.17 gi|435850625|ref|YP_007312211.1| - 6.2e-20 71.6 0.0 9.3e-20 71.0 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit Fer4_7 PF12838.7 gi|435850625|ref|YP_007312211.1| - 2e-08 34.7 12.2 5.2e-08 33.4 12.2 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435850625|ref|YP_007312211.1| - 7.5e-08 32.4 23.0 6.9e-07 29.3 13.0 2.3 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435850625|ref|YP_007312211.1| - 1.3e-07 31.6 9.0 0.00062 19.9 1.6 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|435850625|ref|YP_007312211.1| - 1.8e-07 30.7 17.0 0.00052 19.7 3.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435850625|ref|YP_007312211.1| - 3.5e-07 30.2 13.8 3.4e-06 27.1 14.1 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435850625|ref|YP_007312211.1| - 1.3e-06 28.1 13.0 0.0045 17.0 2.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|435850625|ref|YP_007312211.1| - 1.6e-06 28.5 10.2 4.2e-06 27.2 10.3 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435850625|ref|YP_007312211.1| - 2.5e-06 27.6 13.7 0.0047 17.3 2.2 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|435850625|ref|YP_007312211.1| - 5.4e-06 27.3 12.4 0.018 16.0 2.3 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|435850625|ref|YP_007312211.1| - 7.1e-06 26.4 12.3 0.00016 22.1 13.8 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435850625|ref|YP_007312211.1| - 2.4e-05 24.2 19.9 0.00063 19.7 2.2 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain SLBB PF10531.9 gi|435850625|ref|YP_007312211.1| - 3.5e-05 23.6 0.1 8e-05 22.4 0.1 1.6 1 0 0 1 1 1 1 SLBB domain Fer4_3 PF12798.7 gi|435850625|ref|YP_007312211.1| - 5.2e-05 23.9 19.3 0.027 15.4 7.1 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|435850625|ref|YP_007312211.1| - 0.00026 21.2 12.2 0.084 13.1 1.3 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain NQRA PF05896.11 gi|435850625|ref|YP_007312211.1| - 0.00061 19.3 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) RRM_9 PF18444.1 gi|435850625|ref|YP_007312211.1| - 0.016 15.0 0.0 0.063 13.1 0.0 1.9 2 0 0 2 2 2 0 RNA recognition motif Fer4_22 PF17179.4 gi|435850625|ref|YP_007312211.1| - 0.038 14.8 7.1 1.5 9.7 2.6 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|435850625|ref|YP_007312211.1| - 0.44 10.3 12.1 2.4 7.9 2.4 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.6 gi|435850625|ref|YP_007312211.1| - 5.3 7.7 16.0 2.5 8.7 2.7 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I NQR2_RnfD_RnfE PF03116.15 gi|435850626|ref|YP_007312212.1| - 1.8e-67 227.8 20.8 2.4e-67 227.4 20.8 1.2 1 0 0 1 1 1 1 NQR2, RnfD, RnfE family FMN_bind PF04205.14 gi|435850627|ref|YP_007312213.1| - 1.1e-15 57.9 1.1 2.1e-15 57.0 1.1 1.5 1 0 0 1 1 1 1 FMN-binding domain Rnf-Nqr PF02508.14 gi|435850628|ref|YP_007312214.1| - 5.2e-62 208.9 16.6 6.5e-62 208.6 16.6 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein HA2 PF04408.23 gi|435850628|ref|YP_007312214.1| - 0.098 13.0 0.1 0.17 12.2 0.1 1.4 1 0 0 1 1 1 0 Helicase associated domain (HA2) Rnf-Nqr PF02508.14 gi|435850629|ref|YP_007312215.1| - 4e-52 176.7 21.8 4.4e-52 176.6 21.8 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein Fer4 PF00037.27 gi|435850630|ref|YP_007312216.1| - 1.1e-16 59.9 46.6 1.3e-06 28.0 3.6 5.8 6 0 0 6 6 6 4 4Fe-4S binding domain FeS PF04060.13 gi|435850630|ref|YP_007312216.1| - 1.3e-13 50.3 3.8 1.3e-13 50.3 3.8 4.4 5 1 0 5 5 5 1 Putative Fe-S cluster Fer4_6 PF12837.7 gi|435850630|ref|YP_007312216.1| - 4e-12 45.7 40.6 0.00014 21.8 0.7 5.7 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435850630|ref|YP_007312216.1| - 6.1e-12 45.5 26.7 3e-07 30.5 12.7 3.8 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435850630|ref|YP_007312216.1| - 8.9e-12 45.4 63.3 1.7e-05 25.3 7.6 4.6 1 1 4 5 5 5 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435850630|ref|YP_007312216.1| - 1.6e-09 37.2 47.7 3.5e-05 23.6 2.0 5.8 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435850630|ref|YP_007312216.1| - 4.3e-08 33.1 57.5 0.0002 21.4 15.9 4.7 2 2 2 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435850630|ref|YP_007312216.1| - 4.6e-07 30.7 39.2 0.018 15.9 1.9 4.9 5 0 0 5 5 4 4 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|435850630|ref|YP_007312216.1| - 5.4e-07 29.6 43.4 4.2e-05 23.6 5.2 4.3 3 2 2 5 5 5 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435850630|ref|YP_007312216.1| - 4.6e-05 23.9 32.6 0.0077 16.8 15.3 4.6 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435850630|ref|YP_007312216.1| - 0.00035 20.8 48.2 0.0098 16.3 1.0 6.1 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_8 PF13183.6 gi|435850630|ref|YP_007312216.1| - 0.0043 17.5 42.9 0.0046 17.4 14.2 4.1 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435850630|ref|YP_007312216.1| - 0.043 14.8 52.4 0.087 13.8 2.3 6.5 6 1 0 6 6 6 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|435850630|ref|YP_007312216.1| - 0.079 13.5 3.8 0.079 13.5 3.8 5.5 4 2 0 4 4 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|435850630|ref|YP_007312216.1| - 0.14 12.9 1.2 0.14 12.9 1.2 5.7 3 2 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|435850630|ref|YP_007312216.1| - 0.63 10.2 34.9 3.1 8.0 1.2 4.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|435850630|ref|YP_007312216.1| - 1.4 9.9 34.8 0.34 11.8 0.6 4.8 5 0 0 5 5 5 0 4Fe-4S dicluster domain DUF4870 PF09685.10 gi|435850631|ref|YP_007312217.1| - 0.0026 17.8 7.3 0.0036 17.4 7.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) TIC20 PF16166.5 gi|435850631|ref|YP_007312217.1| - 0.046 13.5 6.2 0.07 12.9 6.2 1.3 1 1 0 1 1 1 0 Chloroplast import apparatus Tic20-like NDUF_B8 PF05821.11 gi|435850631|ref|YP_007312217.1| - 0.14 12.0 2.4 3.8 7.3 0.3 2.1 1 1 1 2 2 2 0 NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8) FA_desaturase PF00487.24 gi|435850631|ref|YP_007312217.1| - 1.5 8.6 8.5 1.8 8.3 8.5 1.2 1 0 0 1 1 1 0 Fatty acid desaturase Rep_fac_C PF08542.11 gi|435850632|ref|YP_007312218.1| - 6.3e-24 84.2 0.1 1.4e-23 83.1 0.1 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|435850632|ref|YP_007312218.1| - 1.3e-18 67.7 0.0 1.3e-17 64.4 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|435850632|ref|YP_007312218.1| - 2.1e-16 60.1 0.0 1e-10 41.7 0.0 2.4 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|435850632|ref|YP_007312218.1| - 1.3e-08 34.7 0.0 1.3e-07 31.5 0.0 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|435850632|ref|YP_007312218.1| - 9.5e-07 29.4 0.1 0.00015 22.2 0.0 2.5 2 1 1 3 3 3 1 AAA ATPase domain Rad17 PF03215.15 gi|435850632|ref|YP_007312218.1| - 2e-06 27.8 0.0 4.8e-06 26.6 0.0 1.6 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|435850632|ref|YP_007312218.1| - 4.6e-06 26.7 0.0 1.1e-05 25.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|435850632|ref|YP_007312218.1| - 9.7e-06 25.7 0.0 5e-05 23.4 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_3 PF07726.11 gi|435850632|ref|YP_007312218.1| - 1e-05 25.4 0.0 1.9e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 gi|435850632|ref|YP_007312218.1| - 1.5e-05 24.4 0.0 4.5e-05 22.8 0.0 1.7 2 0 0 2 2 2 1 TIP49 P-loop domain Mg_chelatase PF01078.21 gi|435850632|ref|YP_007312218.1| - 0.00013 21.5 0.0 0.013 14.9 0.0 2.4 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_assoc_2 PF16193.5 gi|435850632|ref|YP_007312218.1| - 0.00036 20.8 0.1 0.00078 19.7 0.1 1.6 1 0 0 1 1 1 1 AAA C-terminal domain IstB_IS21 PF01695.17 gi|435850632|ref|YP_007312218.1| - 0.0014 18.4 0.0 0.0059 16.3 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|435850632|ref|YP_007312218.1| - 0.0015 18.8 0.1 0.68 10.2 0.0 2.8 2 1 1 3 3 3 1 AAA domain AAA_5 PF07728.14 gi|435850632|ref|YP_007312218.1| - 0.002 18.1 0.0 0.013 15.5 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|435850632|ref|YP_007312218.1| - 0.0029 18.1 0.0 0.046 14.3 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|435850632|ref|YP_007312218.1| - 0.003 17.3 0.0 0.0071 16.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|435850632|ref|YP_007312218.1| - 0.0057 16.4 0.0 2 8.1 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_2 PF07724.14 gi|435850632|ref|YP_007312218.1| - 0.0073 16.4 0.0 0.028 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_11 PF13086.6 gi|435850632|ref|YP_007312218.1| - 0.013 15.3 0.0 0.022 14.5 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|435850632|ref|YP_007312218.1| - 0.013 15.0 0.0 0.025 14.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region SNF2_N PF00176.23 gi|435850632|ref|YP_007312218.1| - 0.014 14.1 0.0 0.068 11.9 0.0 1.8 1 1 1 2 2 2 0 SNF2 family N-terminal domain MCM PF00493.23 gi|435850632|ref|YP_007312218.1| - 0.049 12.7 0.0 0.081 12.0 0.0 1.3 1 0 0 1 1 1 0 MCM P-loop domain PhoH PF02562.16 gi|435850632|ref|YP_007312218.1| - 0.057 12.9 0.0 4.1 6.8 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein DNA_pol3_delta PF06144.13 gi|435850632|ref|YP_007312218.1| - 0.063 13.0 0.0 0.23 11.2 0.0 1.8 1 1 1 2 2 2 0 DNA polymerase III, delta subunit Viral_helicase1 PF01443.18 gi|435850632|ref|YP_007312218.1| - 0.068 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.22 gi|435850632|ref|YP_007312218.1| - 0.1 13.0 0.0 0.25 11.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase TPR_16 PF13432.6 gi|435850632|ref|YP_007312218.1| - 0.15 12.7 1.6 5.3 7.8 0.1 2.9 3 0 0 3 3 2 0 Tetratricopeptide repeat Sm_multidrug_ex PF06695.11 gi|435850633|ref|YP_007312219.1| - 2.2e-40 138.1 1.4 3.2e-40 137.5 1.4 1.2 1 0 0 1 1 1 1 Putative small multi-drug export protein CBFD_NFYB_HMF PF00808.23 gi|435850634|ref|YP_007312220.1| - 3.6e-15 56.0 0.1 4.5e-15 55.7 0.1 1.1 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|435850634|ref|YP_007312220.1| - 9.8e-10 38.9 0.0 1.3e-09 38.5 0.0 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|435850634|ref|YP_007312220.1| - 5.6e-06 26.4 0.0 6.2e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold Bromo_TP PF07524.13 gi|435850634|ref|YP_007312220.1| - 6e-05 23.0 0.0 7.2e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Bromodomain associated TFIID-31kDa PF02291.15 gi|435850634|ref|YP_007312220.1| - 6.4e-05 23.0 0.0 6.9e-05 22.9 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit DUF1931 PF09123.11 gi|435850634|ref|YP_007312220.1| - 0.00018 21.6 0.1 0.00021 21.4 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CENP-S PF15630.6 gi|435850634|ref|YP_007312220.1| - 0.00025 21.4 0.0 0.00031 21.1 0.0 1.1 1 0 0 1 1 1 1 CENP-S protein TAF PF02969.17 gi|435850634|ref|YP_007312220.1| - 0.0066 16.6 0.2 0.0079 16.3 0.2 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-18kDa PF02269.16 gi|435850634|ref|YP_007312220.1| - 0.016 15.2 0.0 0.018 15.1 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit TFIID_20kDa PF03847.13 gi|435850634|ref|YP_007312220.1| - 0.063 13.8 0.1 0.073 13.6 0.1 1.2 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A Peptidase_C39 PF03412.15 gi|435850634|ref|YP_007312220.1| - 0.11 12.4 0.0 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 Peptidase C39 family RelB_N PF18506.1 gi|435850634|ref|YP_007312220.1| - 0.14 12.0 0.7 0.92 9.4 0.3 2.1 2 0 0 2 2 2 0 RelB Antitoxin alpha helical domain Flavodoxin_1 PF00258.25 gi|435850635|ref|YP_007312221.1| - 1.6e-12 47.8 0.0 2.8e-12 47.0 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 gi|435850635|ref|YP_007312221.1| - 1.8e-09 38.0 0.0 3.5e-09 37.0 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|435850635|ref|YP_007312221.1| - 0.0027 17.4 0.0 0.0034 17.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain PTS_IIB PF02302.17 gi|435850635|ref|YP_007312221.1| - 0.011 16.5 0.1 0.031 15.0 0.0 1.8 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit FMN_red PF03358.15 gi|435850635|ref|YP_007312221.1| - 0.014 15.2 0.4 1.3 8.7 0.1 2.1 1 1 1 2 2 2 0 NADPH-dependent FMN reductase tRNA_anti-codon PF01336.25 gi|435850636|ref|YP_007312222.1| - 1.6e-06 28.0 1.4 0.017 15.1 0.1 3.8 3 1 0 3 3 3 2 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|435850636|ref|YP_007312222.1| - 4.3e-05 23.3 0.2 0.032 13.9 0.1 2.7 2 1 1 3 3 3 2 Cell division control protein 24, OB domain 3 RMI1_C PF16099.5 gi|435850636|ref|YP_007312222.1| - 0.13 12.1 0.4 9.4 6.1 0.0 2.3 2 0 0 2 2 2 0 Recq-mediated genome instability protein 1, C-terminal OB-fold TetR_C_37 PF18665.1 gi|435850637|ref|YP_007312223.1| - 0.17 12.5 0.2 1.2 9.8 0.1 2.1 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DeoC PF01791.9 gi|435850640|ref|YP_007312226.1| - 2.2e-52 178.0 0.0 2.7e-52 177.7 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AA_permease_2 PF13520.6 gi|435850641|ref|YP_007312227.1| - 1.5e-47 162.4 54.7 2e-47 162.0 54.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|435850641|ref|YP_007312227.1| - 1.1e-41 142.9 49.4 1.7e-41 142.3 49.4 1.2 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|435850641|ref|YP_007312227.1| - 4e-19 69.5 0.2 2.5e-08 34.5 0.0 2.9 2 1 0 2 2 2 2 Universal stress protein family Spore_permease PF03845.13 gi|435850641|ref|YP_007312227.1| - 2.4e-07 29.9 22.1 2.4e-07 29.9 22.1 2.1 2 0 0 2 2 2 1 Spore germination protein IncD PF17628.2 gi|435850641|ref|YP_007312227.1| - 0.78 9.5 3.6 2.1 8.1 3.6 1.7 1 0 0 1 1 1 0 Inclusion membrane protein D NTR PF01759.21 gi|435850642|ref|YP_007312228.1| - 0.01 15.7 1.1 1 9.2 0.1 2.8 2 1 0 2 2 2 0 UNC-6/NTR/C345C module POT1 PF02765.17 gi|435850642|ref|YP_007312228.1| - 0.12 12.2 0.1 0.42 10.4 0.0 2.0 2 1 0 2 2 2 0 Telomeric single stranded DNA binding POT1/CDC13 DUF3823_C PF18003.1 gi|435850642|ref|YP_007312228.1| - 2.1 9.1 5.3 3 8.6 0.3 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF3823_C) AMH_N PF04709.12 gi|435850643|ref|YP_007312229.1| - 0.018 13.9 0.5 0.023 13.6 0.5 1.1 1 0 0 1 1 1 0 Anti-Mullerian hormone, N terminal region Metallophos_2 PF12850.7 gi|435850645|ref|YP_007312231.1| - 3e-27 95.8 0.0 3.5e-27 95.6 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|435850645|ref|YP_007312231.1| - 0.0004 20.9 0.3 0.1 13.1 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase HTH_24 PF13412.6 gi|435850646|ref|YP_007312232.1| - 2e-10 40.0 0.0 6.3e-10 38.5 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|435850646|ref|YP_007312232.1| - 1.3e-09 37.8 0.0 3.1e-09 36.6 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|435850646|ref|YP_007312232.1| - 1.2e-07 31.5 0.0 4.8e-07 29.6 0.0 2.0 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|435850646|ref|YP_007312232.1| - 6.9e-07 29.1 0.0 3.2e-06 27.0 0.0 2.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|435850646|ref|YP_007312232.1| - 1.5e-06 28.0 0.1 3.4e-06 26.9 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.6 gi|435850646|ref|YP_007312232.1| - 1.4e-05 25.5 0.0 4e-05 24.0 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|435850646|ref|YP_007312232.1| - 9.6e-05 22.7 0.1 0.00026 21.3 0.1 1.7 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|435850646|ref|YP_007312232.1| - 0.00022 21.4 0.1 0.00055 20.1 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_3 PF01381.22 gi|435850646|ref|YP_007312232.1| - 0.00024 21.1 0.1 0.002 18.1 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_45 PF14947.6 gi|435850646|ref|YP_007312232.1| - 0.00033 20.6 0.0 0.00078 19.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix GntR PF00392.21 gi|435850646|ref|YP_007312232.1| - 0.00036 20.1 0.1 0.001 18.7 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|435850646|ref|YP_007312232.1| - 0.00044 20.0 0.0 0.00099 18.9 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|435850646|ref|YP_007312232.1| - 0.00063 19.8 0.1 0.0017 18.4 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|435850646|ref|YP_007312232.1| - 0.00066 19.4 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Mnd1 PF03962.15 gi|435850646|ref|YP_007312232.1| - 0.00094 19.4 0.0 0.0026 18.0 0.0 1.7 1 0 0 1 1 1 1 Mnd1 HTH domain HTH_5 PF01022.20 gi|435850646|ref|YP_007312232.1| - 0.0029 17.4 0.0 0.0067 16.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|435850646|ref|YP_007312232.1| - 0.0077 16.1 0.1 0.021 14.7 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Mrr_N PF14338.6 gi|435850646|ref|YP_007312232.1| - 0.0081 16.3 0.3 0.098 12.8 0.1 2.5 2 1 0 2 2 2 1 Mrr N-terminal domain YdaS_antitoxin PF15943.5 gi|435850646|ref|YP_007312232.1| - 0.011 15.6 0.0 0.081 12.8 0.0 2.3 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_13 PF11972.8 gi|435850646|ref|YP_007312232.1| - 0.017 15.2 0.2 0.049 13.7 0.1 1.9 2 0 0 2 2 1 0 HTH DNA binding domain TetR_C_7 PF14246.6 gi|435850646|ref|YP_007312232.1| - 0.019 15.0 0.0 0.043 13.9 0.0 1.6 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain HTH_10 PF04967.12 gi|435850646|ref|YP_007312232.1| - 0.027 14.3 0.0 0.065 13.1 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_36 PF13730.6 gi|435850646|ref|YP_007312232.1| - 0.032 14.2 0.0 0.073 13.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_rep_O PF04492.13 gi|435850646|ref|YP_007312232.1| - 0.036 14.7 0.0 0.075 13.6 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage replication protein O DUF4423 PF14394.6 gi|435850646|ref|YP_007312232.1| - 0.044 13.5 0.1 0.089 12.5 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_AsnC-type PF13404.6 gi|435850646|ref|YP_007312232.1| - 0.075 12.9 0.1 0.34 10.8 0.0 2.1 1 1 1 2 2 2 0 AsnC-type helix-turn-helix domain HTH_29 PF13551.6 gi|435850646|ref|YP_007312232.1| - 0.078 13.0 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix DUF4364 PF14277.6 gi|435850646|ref|YP_007312232.1| - 0.09 12.5 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) KORA PF16509.5 gi|435850646|ref|YP_007312232.1| - 0.11 12.7 0.4 0.5 10.7 0.1 2.1 2 1 1 3 3 2 0 TrfB plasmid transcriptional repressor FaeA PF04703.12 gi|435850646|ref|YP_007312232.1| - 0.13 12.7 0.3 0.43 11.0 0.0 2.0 2 0 0 2 2 2 0 FaeA-like protein LacI PF00356.21 gi|435850646|ref|YP_007312232.1| - 0.13 12.1 0.1 0.45 10.4 0.0 2.0 2 0 0 2 2 1 0 Bacterial regulatory proteins, lacI family ArsR PF09824.9 gi|435850647|ref|YP_007312233.1| - 2.8e-68 228.5 0.7 3.2e-68 228.3 0.7 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator SMC_ScpB PF04079.16 gi|435850647|ref|YP_007312233.1| - 0.018 14.7 0.0 0.44 10.2 0.0 2.1 2 0 0 2 2 2 0 Segregation and condensation complex subunit ScpB DUF3418 PF11898.8 gi|435850647|ref|YP_007312233.1| - 0.027 13.2 0.0 0.028 13.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3418) TrmO PF01980.16 gi|435850649|ref|YP_007312235.1| - 1.6e-23 83.1 0.0 2.1e-23 82.8 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O TT1725 PF18324.1 gi|435850649|ref|YP_007312235.1| - 0.11 12.6 0.0 18 5.5 0.0 2.1 2 0 0 2 2 2 0 Hypothetical protein TT1725 CN_hydrolase PF00795.22 gi|435850650|ref|YP_007312236.1| - 1.9e-45 155.2 0.0 2.2e-45 155.1 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase PPR_long PF17177.4 gi|435850650|ref|YP_007312236.1| - 0.14 11.5 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 Pentacotripeptide-repeat region of PRORP PHP PF02811.19 gi|435850651|ref|YP_007312237.1| - 2.6e-08 34.4 0.0 3.3e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|435850651|ref|YP_007312237.1| - 0.097 12.4 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 PHP-associated TPR_12 PF13424.6 gi|435850653|ref|YP_007312239.1| - 5.5e-32 109.9 42.2 3.4e-05 24.1 3.3 12.2 9 4 3 12 12 12 9 Tetratricopeptide repeat TPR_10 PF13374.6 gi|435850653|ref|YP_007312239.1| - 3.1e-20 71.4 37.4 1.4e-06 28.0 0.7 11.3 13 0 0 13 13 13 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|435850653|ref|YP_007312239.1| - 2.2e-18 64.8 33.5 0.05 13.7 0.2 12.8 13 0 0 13 13 12 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|435850653|ref|YP_007312239.1| - 2.2e-14 52.6 31.1 0.034 14.0 0.1 11.0 12 0 0 12 12 11 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|435850653|ref|YP_007312239.1| - 6.7e-14 50.9 33.0 0.084 13.1 0.3 12.5 13 0 0 13 13 12 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|435850653|ref|YP_007312239.1| - 4.1e-10 39.0 30.6 0.08 13.0 0.0 11.9 14 0 0 14 14 12 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|435850653|ref|YP_007312239.1| - 4.3e-08 33.0 21.4 1.9 9.0 0.0 10.1 11 1 0 11 11 10 1 Tetratricopeptide repeat TPR_4 PF07721.14 gi|435850653|ref|YP_007312239.1| - 2.4e-07 30.7 7.6 3.2 8.6 0.0 8.2 8 0 0 8 8 7 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|435850653|ref|YP_007312239.1| - 2.1e-06 28.1 26.7 3.4 8.7 0.1 12.7 13 2 1 14 14 12 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|435850653|ref|YP_007312239.1| - 2.1e-05 24.9 33.9 2.3 8.8 1.8 10.6 7 3 4 11 11 11 2 Tetratricopeptide repeat DUF3856 PF12968.7 gi|435850653|ref|YP_007312239.1| - 0.0002 21.5 13.8 2.1 8.4 0.3 5.8 4 2 1 5 5 5 3 Domain of Unknown Function (DUF3856) TOM20_plant PF06552.12 gi|435850653|ref|YP_007312239.1| - 0.00038 20.3 5.3 0.37 10.5 0.1 4.1 3 0 0 3 3 3 2 Plant specific mitochondrial import receptor subunit TOM20 DUF2225 PF09986.9 gi|435850653|ref|YP_007312239.1| - 0.00044 20.0 20.7 0.61 9.8 0.4 5.4 4 2 2 6 6 6 3 Uncharacterized protein conserved in bacteria (DUF2225) TPR_16 PF13432.6 gi|435850653|ref|YP_007312239.1| - 0.00087 19.9 21.0 4.7 7.9 0.1 9.3 10 2 1 11 11 8 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|435850653|ref|YP_007312239.1| - 0.001 19.5 32.2 1.5 9.6 0.1 11.1 13 1 0 13 13 11 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|435850653|ref|YP_007312239.1| - 0.022 14.5 18.4 5.6 6.7 0.1 8.8 10 2 0 10 10 9 0 TPR repeat Flu_M1_C PF08289.11 gi|435850653|ref|YP_007312239.1| - 0.31 11.3 2.5 2.3 8.5 0.0 3.3 3 0 0 3 3 2 0 Influenza Matrix protein (M1) C-terminal domain TPR_21 PF09976.9 gi|435850653|ref|YP_007312239.1| - 0.37 10.5 32.0 8 6.1 0.1 8.7 5 2 4 9 9 9 0 Tetratricopeptide repeat-like domain HHH_8 PF14716.6 gi|435850653|ref|YP_007312239.1| - 0.58 10.6 8.3 0.65 10.4 0.0 4.8 4 1 1 5 5 4 0 Helix-hairpin-helix domain PPR_2 PF13041.6 gi|435850653|ref|YP_007312239.1| - 3.2 8.0 7.7 21 5.4 0.0 4.9 4 0 0 4 4 3 0 PPR repeat family Aldolase_II PF00596.21 gi|435850654|ref|YP_007312240.1| - 4.4e-35 121.3 0.1 4.9e-35 121.2 0.1 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain 3Beta_HSD PF01073.19 gi|435850654|ref|YP_007312240.1| - 0.089 11.8 0.1 0.15 11.0 0.1 1.3 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family CDP-OH_P_transf PF01066.21 gi|435850655|ref|YP_007312241.1| - 7.5e-10 39.4 1.0 7.5e-10 39.4 1.0 2.7 3 0 0 3 3 3 1 CDP-alcohol phosphatidyltransferase TMEM72 PF16054.5 gi|435850655|ref|YP_007312241.1| - 0.043 13.5 2.0 0.079 12.7 2.0 1.5 1 0 0 1 1 1 0 Transmembrane protein family 72 Archease PF01951.16 gi|435850656|ref|YP_007312242.1| - 3e-46 157.1 1.3 3.3e-46 157.0 1.3 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) RtcB PF01139.17 gi|435850657|ref|YP_007312243.1| - 4.3e-171 569.6 0.1 5e-171 569.4 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB TGT_C2 PF14810.6 gi|435850658|ref|YP_007312244.1| - 4e-29 100.5 0.0 7.3e-29 99.7 0.0 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|435850658|ref|YP_007312244.1| - 2.9e-13 49.6 0.0 5.1e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 PUA domain PUA_3 PF17785.1 gi|435850658|ref|YP_007312244.1| - 0.01 15.6 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 0 PUA-like domain UPF0113 PF03657.13 gi|435850658|ref|YP_007312244.1| - 0.014 15.7 0.0 0.025 14.8 0.0 1.4 1 0 0 1 1 1 0 UPF0113 PUA domain Phage_CI_C PF16452.5 gi|435850658|ref|YP_007312244.1| - 0.02 15.2 0.0 0.067 13.5 0.0 1.8 1 1 1 2 2 2 0 Bacteriophage CI repressor C-terminal domain AbrB_C PF18277.1 gi|435850658|ref|YP_007312244.1| - 0.069 12.8 0.1 7.4 6.3 0.0 2.3 2 0 0 2 2 2 0 AbrB C-terminal domain Bactofilin PF04519.13 gi|435850659|ref|YP_007312245.1| - 1.1e-11 44.9 13.0 2.3e-06 27.8 1.9 4.0 2 2 2 4 4 4 4 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|435850659|ref|YP_007312245.1| - 0.16 11.8 24.5 0.63 9.9 0.2 6.2 6 1 1 7 7 7 0 Bacterial transferase hexapeptide (six repeats) DUF2721 PF11026.8 gi|435850660|ref|YP_007312246.1| - 0.72 9.8 13.2 0.14 12.1 9.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) Aminotran_3 PF00202.21 gi|435850661|ref|YP_007312247.1| - 1.8e-123 412.2 0.5 2.2e-123 411.9 0.5 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.21 gi|435850661|ref|YP_007312247.1| - 9.9e-08 31.6 0.2 7.4e-07 28.7 0.2 2.2 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|435850661|ref|YP_007312247.1| - 0.00018 20.9 0.7 0.00098 18.5 0.7 2.0 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|435850661|ref|YP_007312247.1| - 0.0023 16.6 0.0 0.0032 16.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|435850661|ref|YP_007312247.1| - 0.0081 15.4 0.0 0.019 14.1 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_1_2 PF00155.21 gi|435850662|ref|YP_007312248.1| - 3.1e-56 191.1 0.0 3.5e-56 191.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|435850662|ref|YP_007312248.1| - 6e-08 32.4 0.0 8.8e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|435850662|ref|YP_007312248.1| - 2.6e-05 23.3 0.0 0.00025 20.1 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|435850662|ref|YP_007312248.1| - 0.00062 18.4 0.1 0.0015 17.1 0.0 1.6 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|435850662|ref|YP_007312248.1| - 0.0065 15.4 0.0 0.013 14.4 0.0 1.5 2 0 0 2 2 2 1 Allinase DHNA PF04038.12 gi|435850663|ref|YP_007312249.1| - 5e-44 149.2 0.0 5.7e-44 149.1 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase CDP-OH_P_transf PF01066.21 gi|435850664|ref|YP_007312250.1| - 7e-11 42.7 2.3 7e-11 42.7 2.3 3.7 3 1 0 3 3 3 1 CDP-alcohol phosphatidyltransferase PS_Dcarbxylase PF02666.15 gi|435850665|ref|YP_007312251.1| - 2.5e-29 102.2 1.1 4.9e-25 88.3 0.4 2.1 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase Peptidase_M23 PF01551.22 gi|435850665|ref|YP_007312251.1| - 0.028 14.6 0.1 0.33 11.2 0.0 2.6 1 1 2 3 3 3 0 Peptidase family M23 PsbT PF01405.17 gi|435850665|ref|YP_007312251.1| - 0.18 11.7 3.4 0.35 10.7 3.4 1.5 1 0 0 1 1 1 0 Photosystem II reaction centre T protein DUF4131 PF13567.6 gi|435850665|ref|YP_007312251.1| - 0.19 11.4 0.1 0.31 10.7 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Exosortase_EpsH PF09721.10 gi|435850666|ref|YP_007312252.1| - 4e-12 46.2 18.0 5.6e-12 45.7 18.0 1.3 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) NUDIX PF00293.28 gi|435850667|ref|YP_007312253.1| - 1.1e-17 64.3 0.0 1.3e-17 64.1 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|435850667|ref|YP_007312253.1| - 0.0027 17.2 0.0 0.0056 16.2 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4916) TFIIS_C PF01096.18 gi|435850668|ref|YP_007312254.1| - 2.2e-18 65.8 15.9 1.6e-17 63.1 4.6 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.11 gi|435850668|ref|YP_007312254.1| - 1.5e-06 28.1 8.2 0.00038 20.3 1.2 2.3 2 0 0 2 2 2 2 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.16 gi|435850668|ref|YP_007312254.1| - 2.3e-06 27.4 1.6 2.3e-06 27.4 1.6 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.12 gi|435850668|ref|YP_007312254.1| - 0.00028 20.3 13.3 0.0024 17.4 2.5 3.3 2 2 1 3 3 3 2 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|435850668|ref|YP_007312254.1| - 0.00032 20.6 11.7 0.0037 17.2 1.1 2.6 2 1 0 2 2 2 2 Transposase zinc-ribbon domain zf-ACC PF17848.1 gi|435850668|ref|YP_007312254.1| - 0.00048 20.1 13.5 3.1 8.0 0.1 4.2 4 0 0 4 4 4 2 Acetyl-coA carboxylase zinc finger domain Nudix_N_2 PF14803.6 gi|435850668|ref|YP_007312254.1| - 0.0012 18.7 8.8 0.16 11.9 0.1 3.6 3 1 0 3 3 3 1 Nudix N-terminal zf_UBZ PF18439.1 gi|435850668|ref|YP_007312254.1| - 0.0019 17.7 9.2 2.8 7.6 0.0 4.1 4 0 0 4 4 4 1 Ubiquitin-Binding Zinc Finger zinc-ribbons_6 PF07191.12 gi|435850668|ref|YP_007312254.1| - 0.0027 17.6 6.7 0.061 13.3 0.3 2.7 2 1 0 2 2 2 1 zinc-ribbons TackOD1 PF18551.1 gi|435850668|ref|YP_007312254.1| - 0.004 16.8 8.6 0.088 12.5 8.6 2.5 1 1 0 1 1 1 1 Thaumarchaeal output domain 1 Ogr_Delta PF04606.12 gi|435850668|ref|YP_007312254.1| - 0.0044 17.0 1.2 0.0044 17.0 1.2 2.8 3 0 0 3 3 3 1 Ogr/Delta-like zinc finger Zn-ribbon_8 PF09723.10 gi|435850668|ref|YP_007312254.1| - 0.0083 16.2 11.8 6.2 7.0 5.3 4.1 3 1 0 3 3 3 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|435850668|ref|YP_007312254.1| - 0.02 14.5 9.0 0.2 11.4 0.0 3.4 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 gi|435850668|ref|YP_007312254.1| - 0.023 14.7 12.9 0.31 11.1 3.1 2.9 1 1 1 2 2 2 0 Double zinc ribbon DUF3268 PF11672.8 gi|435850668|ref|YP_007312254.1| - 0.038 14.3 0.5 0.038 14.3 0.5 2.2 2 1 0 2 2 2 0 zinc-finger-containing domain GFA PF04828.14 gi|435850668|ref|YP_007312254.1| - 0.039 14.3 0.2 0.039 14.3 0.2 2.7 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_2 PF13240.6 gi|435850668|ref|YP_007312254.1| - 0.095 12.5 18.9 0.27 11.0 0.2 4.2 4 0 0 4 4 4 0 zinc-ribbon domain CpXC PF14353.6 gi|435850668|ref|YP_007312254.1| - 0.11 12.5 0.2 0.11 12.5 0.2 2.9 2 1 1 3 3 3 0 CpXC protein zf-ribbon_3 PF13248.6 gi|435850668|ref|YP_007312254.1| - 0.13 11.7 0.3 0.13 11.7 0.3 3.5 3 1 0 3 3 3 0 zinc-ribbon domain UPF0547 PF10571.9 gi|435850668|ref|YP_007312254.1| - 0.14 12.2 0.1 0.14 12.2 0.1 3.6 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.6 gi|435850668|ref|YP_007312254.1| - 0.17 11.8 19.4 1.2 9.2 0.7 4.4 5 0 0 5 5 4 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|435850668|ref|YP_007312254.1| - 0.19 11.8 3.6 2.2 8.4 0.7 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-DNA_Pol PF08996.10 gi|435850668|ref|YP_007312254.1| - 0.3 10.8 3.6 0.56 9.9 0.3 2.2 1 1 0 2 2 2 0 DNA Polymerase alpha zinc finger zinc-ribbon_6 PF10005.9 gi|435850668|ref|YP_007312254.1| - 0.32 11.7 5.5 11 6.8 0.2 2.7 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|435850668|ref|YP_007312254.1| - 0.33 10.7 10.8 6.1 6.7 0.0 4.4 4 1 0 4 4 4 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_15 PF17032.5 gi|435850668|ref|YP_007312254.1| - 0.34 11.7 0.2 0.34 11.7 0.2 3.1 2 1 0 3 3 3 0 zinc-ribbon family HypA PF01155.19 gi|435850668|ref|YP_007312254.1| - 0.39 10.8 8.2 1.3 9.0 2.6 2.8 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_7 PF02591.15 gi|435850668|ref|YP_007312254.1| - 0.41 10.9 3.9 6.8 7.0 0.1 3.7 4 0 0 4 4 4 0 C4-type zinc ribbon domain Rubredoxin_2 PF18073.1 gi|435850668|ref|YP_007312254.1| - 0.55 10.0 16.4 1.6 8.5 0.2 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain Terminase_GpA PF05876.12 gi|435850668|ref|YP_007312254.1| - 1.6 7.2 5.9 0.25 9.9 1.8 1.6 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) zf-RRN7 PF11781.8 gi|435850668|ref|YP_007312254.1| - 1.9 8.3 13.3 4.5 7.0 4.0 3.7 3 1 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-IS66 PF13005.7 gi|435850668|ref|YP_007312254.1| - 3.2 8.2 10.2 8.4 6.9 0.0 3.7 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 DiS_P_DiS PF06750.13 gi|435850668|ref|YP_007312254.1| - 3.3 7.9 0.0 3.3 7.9 0.0 3.2 3 1 0 3 3 3 0 Bacterial Peptidase A24 N-terminal domain HalOD2 PF18547.1 gi|435850668|ref|YP_007312254.1| - 3.7 7.5 12.9 7.7 6.5 0.2 3.6 4 0 0 4 4 3 0 Halobacterial output domain 2 zf-C4_Topoisom PF01396.19 gi|435850668|ref|YP_007312254.1| - 5.7 6.8 13.6 4.8 7.1 0.9 3.8 4 1 1 5 5 5 0 Topoisomerase DNA binding C4 zinc finger A2L_zn_ribbon PF08792.10 gi|435850668|ref|YP_007312254.1| - 6.2 6.7 14.5 8.9 6.2 0.6 4.0 3 1 1 4 4 4 0 A2L zinc ribbon domain Opy2 PF09463.10 gi|435850668|ref|YP_007312254.1| - 6.8 7.1 11.5 10 6.6 0.6 3.2 3 0 0 3 3 3 0 Opy2 protein zf-3CxxC_2 PF17180.4 gi|435850668|ref|YP_007312254.1| - 7.3 7.4 15.8 30 5.4 0.0 3.9 2 2 1 3 3 3 0 Zinc-binding domain PhnA_Zn_Ribbon PF08274.12 gi|435850668|ref|YP_007312254.1| - 8.4 6.4 16.9 12 6.0 0.4 3.8 2 2 0 3 3 3 0 PhnA Zinc-Ribbon zf-Mss51 PF13824.6 gi|435850668|ref|YP_007312254.1| - 9.5 6.4 12.4 3.7 7.7 2.1 2.9 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 PCNA_N PF00705.18 gi|435850669|ref|YP_007312255.1| - 2.3e-15 56.4 1.2 2.3e-14 53.2 0.4 2.4 2 1 1 3 3 3 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|435850669|ref|YP_007312255.1| - 3.1e-09 37.1 0.1 2.6e-08 34.1 0.0 2.3 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|435850669|ref|YP_007312255.1| - 0.0021 17.6 0.0 0.012 15.1 0.0 1.9 1 1 0 2 2 2 1 Rad9 Rad1 PF02144.16 gi|435850669|ref|YP_007312255.1| - 0.013 14.6 0.1 0.1 11.7 0.0 2.0 1 1 0 2 2 2 0 Repair protein Rad1/Rec1/Rad17 PA14 PF07691.12 gi|435850669|ref|YP_007312255.1| - 0.031 14.1 0.0 0.049 13.5 0.0 1.3 1 0 0 1 1 1 0 PA14 domain GLEYA PF10528.9 gi|435850669|ref|YP_007312255.1| - 0.049 14.1 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 GLEYA domain DNA_primase_lrg PF04104.14 gi|435850670|ref|YP_007312256.1| - 5.7e-36 124.3 0.1 1.5e-35 122.9 0.1 1.6 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit CHAT PF12770.7 gi|435850670|ref|YP_007312256.1| - 0.1 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 CHAT domain PspA_IM30 PF04012.12 gi|435850671|ref|YP_007312257.1| - 5.9e-26 91.4 31.6 6.6e-26 91.3 31.6 1.0 1 0 0 1 1 1 1 PspA/IM30 family Flagellin_C PF00700.21 gi|435850671|ref|YP_007312257.1| - 2.2e-05 24.7 11.6 0.055 13.8 0.2 3.5 3 0 0 3 3 3 2 Bacterial flagellin C-terminal helical region SLAIN PF15301.6 gi|435850671|ref|YP_007312257.1| - 0.0042 16.4 2.1 0.0042 16.4 2.1 1.6 1 1 1 2 2 2 1 SLAIN motif-containing family NOG1 PF06858.14 gi|435850671|ref|YP_007312257.1| - 0.0047 16.7 0.1 0.021 14.6 0.0 2.1 2 0 0 2 2 2 1 Nucleolar GTP-binding protein 1 (NOG1) DUF1910 PF08928.10 gi|435850671|ref|YP_007312257.1| - 0.034 14.1 0.5 0.034 14.1 0.5 2.4 1 1 2 3 3 3 0 Domain of unknown function (DUF1910) DUF1664 PF07889.12 gi|435850671|ref|YP_007312257.1| - 0.14 12.2 19.0 0.64 10.1 2.8 3.4 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) Snf7 PF03357.21 gi|435850671|ref|YP_007312257.1| - 0.43 10.1 31.3 2.1 7.9 26.6 3.0 1 1 1 2 2 2 0 Snf7 YabA PF06156.13 gi|435850671|ref|YP_007312257.1| - 0.54 10.9 18.6 0.96 10.1 3.4 3.2 1 1 2 3 3 3 0 Initiation control protein YabA Baculo_PEP_C PF04513.12 gi|435850671|ref|YP_007312257.1| - 0.57 10.2 13.4 5.1 7.1 1.8 3.2 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3450 PF11932.8 gi|435850671|ref|YP_007312257.1| - 2 7.7 26.9 2.2 7.5 10.5 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) Exonuc_VII_L PF02601.15 gi|435850671|ref|YP_007312257.1| - 2 7.9 20.2 22 4.5 20.2 2.0 1 1 0 1 1 1 0 Exonuclease VII, large subunit Prominin PF05478.11 gi|435850671|ref|YP_007312257.1| - 3 5.7 12.2 1.3 6.9 9.1 1.9 1 1 1 2 2 2 0 Prominin COG5 PF10392.9 gi|435850671|ref|YP_007312257.1| - 3.6 7.8 12.7 1.1 9.4 7.6 2.7 1 1 0 2 2 2 0 Golgi transport complex subunit 5 DUF4407 PF14362.6 gi|435850671|ref|YP_007312257.1| - 5 6.4 25.5 1.2 8.4 7.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Spc7 PF08317.11 gi|435850671|ref|YP_007312257.1| - 6.6 5.5 30.5 2.5 6.9 19.2 2.3 1 1 1 2 2 2 0 Spc7 kinetochore protein GCN5L1 PF06320.13 gi|435850671|ref|YP_007312257.1| - 7 6.8 22.3 0.15 12.2 3.1 3.2 2 2 1 3 3 3 0 GCN5-like protein 1 (GCN5L1) Tweety PF04906.13 gi|435850671|ref|YP_007312257.1| - 9.4 4.8 10.3 1.7 7.2 4.3 2.1 1 1 1 2 2 2 0 Tweety Peptidase_M48 PF01435.18 gi|435850674|ref|YP_007312260.1| - 1.5e-42 145.6 1.0 1.7e-42 145.5 0.0 1.5 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|435850674|ref|YP_007312260.1| - 8e-07 28.5 0.3 4.1e-06 26.2 0.0 2.1 2 0 0 2 2 2 1 BlaR1 peptidase M56 Wzy_C PF04932.15 gi|435850674|ref|YP_007312260.1| - 0.15 11.7 4.6 0.39 10.3 0.4 2.3 2 0 0 2 2 2 0 O-Antigen ligase PhoR PF11808.8 gi|435850674|ref|YP_007312260.1| - 2.2 8.8 7.7 0.11 13.0 1.0 2.1 2 0 0 2 2 2 0 Phosphate regulon sensor protein PhoR GATase_3 PF07685.14 gi|435850675|ref|YP_007312261.1| - 2.5e-33 115.3 0.0 3.6e-33 114.8 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|435850675|ref|YP_007312261.1| - 6.2e-20 71.9 1.5 1.6e-12 47.7 0.0 2.3 1 1 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|435850675|ref|YP_007312261.1| - 1.8e-18 66.9 0.0 2.8e-18 66.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.11 gi|435850675|ref|YP_007312261.1| - 0.00043 19.6 0.7 0.0009 18.6 0.7 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain AAA_31 PF13614.6 gi|435850675|ref|YP_007312261.1| - 0.065 13.1 0.1 0.1 12.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain VirC1 PF07015.11 gi|435850675|ref|YP_007312261.1| - 0.079 12.2 0.1 0.14 11.5 0.1 1.3 1 0 0 1 1 1 0 VirC1 protein Radical_SAM PF04055.21 gi|435850676|ref|YP_007312262.1| - 1e-30 107.3 0.0 4.3e-30 105.3 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|435850676|ref|YP_007312262.1| - 6.4e-18 64.9 0.0 1e-17 64.2 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|435850676|ref|YP_007312262.1| - 9.1e-07 29.2 0.0 1.7e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|435850676|ref|YP_007312262.1| - 3.3e-06 27.2 0.0 6.3e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain PA-IIL PF07472.11 gi|435850677|ref|YP_007312263.1| - 0.0058 16.9 0.1 0.0059 16.9 0.1 1.0 1 0 0 1 1 1 1 Fucose-binding lectin II (PA-IIL) DUF4444 PF14563.6 gi|435850677|ref|YP_007312263.1| - 0.021 14.5 0.1 0.027 14.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4444) SurE PF01975.17 gi|435850678|ref|YP_007312264.1| - 3.5e-55 186.8 0.0 4.3e-55 186.5 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE DUF5315 PF17242.2 gi|435850679|ref|YP_007312265.1| - 0.019 14.8 0.6 0.043 13.7 0.6 1.7 1 0 0 1 1 1 0 Disordered region of unknown function (DUF5315) AAA_23 PF13476.6 gi|435850679|ref|YP_007312265.1| - 0.34 11.4 4.5 0.42 11.1 4.5 1.1 1 0 0 1 1 1 0 AAA domain tRNA-synt_2c PF01411.19 gi|435850681|ref|YP_007312267.1| - 2.6e-133 445.5 0.0 3.3e-133 445.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|435850681|ref|YP_007312267.1| - 2.1e-19 70.3 5.5 3.9e-19 69.4 4.8 1.8 2 0 0 2 2 2 1 DHHA1 domain tRNA_SAD PF07973.14 gi|435850681|ref|YP_007312267.1| - 7.2e-12 45.2 0.2 1.4e-11 44.3 0.2 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain PI_PP_I PF18363.1 gi|435850681|ref|YP_007312267.1| - 0.14 12.4 0.0 0.37 11.0 0.0 1.7 1 0 0 1 1 1 0 Phosphoinositide phosphatase insertion domain Response_reg PF00072.24 gi|435850682|ref|YP_007312268.1| - 1.5e-29 102.4 0.9 2.8e-29 101.5 0.4 1.7 2 0 0 2 2 2 1 Response regulator receiver domain DUF835 PF05763.12 gi|435850682|ref|YP_007312268.1| - 0.0096 15.7 0.2 0.052 13.3 0.1 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF835) Peripla_BP_2 PF01497.18 gi|435850682|ref|YP_007312268.1| - 0.035 13.7 0.1 4.2 6.9 0.0 2.2 1 1 1 2 2 2 0 Periplasmic binding protein Elong_Iki1 PF10483.9 gi|435850682|ref|YP_007312268.1| - 0.044 13.3 0.1 0.69 9.4 0.0 2.1 2 0 0 2 2 2 0 Elongator subunit Iki1 Methyltransf_15 PF09445.10 gi|435850683|ref|YP_007312269.1| - 4.7e-12 45.8 0.0 7.8e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|435850683|ref|YP_007312269.1| - 1e-08 35.7 0.0 3.2e-08 34.2 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|435850683|ref|YP_007312269.1| - 3.7e-07 30.1 0.1 9.8e-07 28.7 0.1 1.8 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435850683|ref|YP_007312269.1| - 1.6e-06 28.7 0.0 4.7e-06 27.2 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|435850683|ref|YP_007312269.1| - 0.00025 20.6 0.0 0.00088 18.8 0.0 1.9 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_18 PF12847.7 gi|435850683|ref|YP_007312269.1| - 0.00091 19.2 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|435850683|ref|YP_007312269.1| - 0.00098 18.7 0.0 0.0016 18.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain tRNA_U5-meth_tr PF05958.11 gi|435850683|ref|YP_007312269.1| - 0.0012 17.9 0.0 0.0025 16.9 0.0 1.5 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Cons_hypoth95 PF03602.15 gi|435850683|ref|YP_007312269.1| - 0.0015 18.2 0.0 0.0031 17.2 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|435850683|ref|YP_007312269.1| - 0.0016 18.2 0.0 0.0042 16.9 0.0 1.6 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_12 PF08242.12 gi|435850683|ref|YP_007312269.1| - 0.015 16.0 0.0 0.19 12.5 0.0 2.5 1 1 1 2 2 2 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|435850683|ref|YP_007312269.1| - 0.017 14.5 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltr_RsmB-F PF01189.17 gi|435850683|ref|YP_007312269.1| - 0.041 13.5 0.0 0.074 12.7 0.0 1.4 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F N6_Mtase PF02384.16 gi|435850683|ref|YP_007312269.1| - 0.045 13.0 0.0 0.064 12.5 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase FtsJ PF01728.19 gi|435850683|ref|YP_007312269.1| - 0.065 13.3 0.0 0.096 12.8 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase RrnaAD PF00398.20 gi|435850683|ref|YP_007312269.1| - 0.075 12.1 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Raco_middle PF17651.1 gi|435850683|ref|YP_007312269.1| - 0.088 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 RACo middle region PCMT PF01135.19 gi|435850683|ref|YP_007312269.1| - 0.18 11.6 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Arch_fla_DE PF04659.13 gi|435850684|ref|YP_007312270.1| - 7e-28 96.3 0.0 1.8e-27 95.0 0.0 1.7 1 0 0 1 1 1 1 Archaeal flagella protein FlaC_arch PF05377.11 gi|435850684|ref|YP_007312270.1| - 1.2e-20 73.6 21.2 8.6e-20 70.9 3.9 5.0 4 1 1 5 5 5 2 Flagella accessory protein C (FlaC) Tropomyosin PF00261.20 gi|435850684|ref|YP_007312270.1| - 0.0021 17.5 7.4 0.0097 15.3 0.9 2.9 2 1 0 2 2 2 1 Tropomyosin Spc7 PF08317.11 gi|435850684|ref|YP_007312270.1| - 0.017 14.1 9.5 0.087 11.7 1.3 2.3 2 0 0 2 2 2 0 Spc7 kinetochore protein NPV_P10 PF05531.12 gi|435850684|ref|YP_007312270.1| - 0.019 15.4 3.4 0.86 10.1 0.0 3.6 3 1 1 4 4 3 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|435850684|ref|YP_007312270.1| - 0.048 13.7 11.3 0.18 11.8 1.4 2.9 3 1 0 3 3 2 0 Protein of unknown function (DUF1664) KxDL PF10241.9 gi|435850684|ref|YP_007312270.1| - 0.076 13.3 5.6 1.7 9.0 0.1 3.6 3 0 0 3 3 3 0 Uncharacterized conserved protein DUF16 PF01519.16 gi|435850684|ref|YP_007312270.1| - 0.13 12.8 11.8 1.1e+03 0.1 11.8 3.2 1 1 0 1 1 1 0 Protein of unknown function DUF16 Sec34 PF04136.15 gi|435850684|ref|YP_007312270.1| - 0.17 11.8 6.5 2.3 8.1 0.2 2.9 1 1 2 3 3 3 0 Sec34-like family UPF0242 PF06785.11 gi|435850684|ref|YP_007312270.1| - 0.18 11.9 6.4 0.45 10.6 0.6 2.2 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus MCPsignal PF00015.21 gi|435850684|ref|YP_007312270.1| - 0.2 11.5 5.7 0.59 9.9 1.2 2.5 2 1 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF724 PF05266.14 gi|435850684|ref|YP_007312270.1| - 0.2 11.5 10.6 0.99 9.2 0.1 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF724) V_ATPase_I PF01496.19 gi|435850684|ref|YP_007312270.1| - 0.23 9.4 8.5 0.022 12.7 1.9 1.9 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Snapin_Pallidin PF14712.6 gi|435850684|ref|YP_007312270.1| - 0.27 11.7 0.1 0.27 11.7 0.1 3.1 4 0 0 4 4 3 0 Snapin/Pallidin Taxilin PF09728.9 gi|435850684|ref|YP_007312270.1| - 0.39 9.8 9.2 0.33 10.1 2.2 2.2 1 1 1 2 2 2 0 Myosin-like coiled-coil protein CENP-F_leu_zip PF10473.9 gi|435850684|ref|YP_007312270.1| - 0.44 10.6 10.2 0.14 12.2 1.2 2.6 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spectrin PF00435.21 gi|435850684|ref|YP_007312270.1| - 0.47 11.0 3.0 2.9 8.4 0.1 2.6 1 1 0 2 2 2 0 Spectrin repeat bZIP_1 PF00170.21 gi|435850684|ref|YP_007312270.1| - 0.53 10.4 6.2 5.6 7.1 0.1 3.0 2 1 0 2 2 2 0 bZIP transcription factor BLOC1_2 PF10046.9 gi|435850684|ref|YP_007312270.1| - 0.61 10.4 8.2 9.9 6.5 0.7 3.3 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 XhlA PF10779.9 gi|435850684|ref|YP_007312270.1| - 0.92 9.8 15.8 0.22 11.8 0.8 4.8 3 1 2 5 5 5 0 Haemolysin XhlA APG17 PF04108.12 gi|435850684|ref|YP_007312270.1| - 1 8.4 7.5 0.47 9.5 1.6 2.1 1 1 1 2 2 2 0 Autophagy protein Apg17 Laminin_II PF06009.12 gi|435850684|ref|YP_007312270.1| - 1 9.3 12.4 0.35 10.9 2.2 3.1 4 0 0 4 4 4 0 Laminin Domain II GrpE PF01025.19 gi|435850684|ref|YP_007312270.1| - 2.1 8.0 7.5 10 5.7 0.9 2.8 2 1 0 2 2 2 0 GrpE GPS2_interact PF15784.5 gi|435850684|ref|YP_007312270.1| - 2.3 8.7 9.0 35 4.9 1.6 3.8 3 1 1 4 4 4 0 G-protein pathway suppressor 2-interacting domain HMMR_N PF15905.5 gi|435850684|ref|YP_007312270.1| - 2.6 7.4 11.6 28 4.0 11.6 2.1 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal DivIC PF04977.15 gi|435850684|ref|YP_007312270.1| - 3.3 7.5 4.7 15 5.5 1.4 2.7 2 1 0 2 2 2 0 Septum formation initiator ZapB PF06005.12 gi|435850684|ref|YP_007312270.1| - 3.4 8.2 7.5 3.3 8.2 0.1 3.3 3 1 0 3 3 3 0 Cell division protein ZapB Allexi_40kDa PF05549.11 gi|435850684|ref|YP_007312270.1| - 3.8 6.9 5.8 2.2 7.7 2.5 2.2 1 1 0 2 2 2 0 Allexivirus 40kDa protein DUF4665 PF15679.5 gi|435850684|ref|YP_007312270.1| - 4 8.1 8.0 3.1 8.5 0.1 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4665) Arch_flagellin PF01917.16 gi|435850685|ref|YP_007312271.1| - 3.8e-06 27.2 3.9 5.5e-06 26.7 3.9 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin BiPBP_C PF06832.12 gi|435850685|ref|YP_007312271.1| - 0.1 12.6 0.0 0.81 9.8 0.0 2.0 1 1 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family Arch_flagellin PF01917.16 gi|435850686|ref|YP_007312272.1| - 8.6e-23 81.3 1.8 1e-22 81.1 1.8 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF2157 PF09925.9 gi|435850686|ref|YP_007312272.1| - 0.074 12.8 0.1 0.11 12.3 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) Dexa_ind PF15198.6 gi|435850686|ref|YP_007312272.1| - 0.21 11.7 3.4 6 7.0 0.2 2.8 2 1 0 2 2 2 0 Dexamethasone-induced ATPase PF06745.13 gi|435850687|ref|YP_007312273.1| - 1.2e-15 57.5 0.1 1.6e-15 57.1 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|435850687|ref|YP_007312273.1| - 0.004 16.7 0.0 1.1 8.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain SRP54 PF00448.22 gi|435850687|ref|YP_007312273.1| - 0.0044 16.7 0.0 0.0098 15.5 0.0 1.6 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain DUF5087 PF17006.5 gi|435850687|ref|YP_007312273.1| - 0.017 14.7 1.3 0.021 14.4 1.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5087) ABC_tran PF00005.27 gi|435850687|ref|YP_007312273.1| - 0.027 15.0 0.3 0.052 14.1 0.3 1.4 1 0 0 1 1 1 0 ABC transporter DnaB_C PF03796.15 gi|435850687|ref|YP_007312273.1| - 0.04 13.2 0.0 0.11 11.8 0.0 1.7 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_28 PF13521.6 gi|435850687|ref|YP_007312273.1| - 0.047 13.9 0.9 0.081 13.2 0.9 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|435850687|ref|YP_007312273.1| - 0.048 13.7 0.0 0.074 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|435850687|ref|YP_007312273.1| - 0.056 13.5 0.1 0.1 12.7 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|435850687|ref|YP_007312273.1| - 0.11 12.8 1.7 0.47 10.7 1.7 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|435850687|ref|YP_007312273.1| - 0.24 11.1 1.4 0.66 9.7 1.1 1.9 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|435850688|ref|YP_007312274.1| - 4.5e-44 150.5 0.0 6.3e-44 150.1 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|435850688|ref|YP_007312274.1| - 0.0019 17.9 0.0 0.0039 16.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|435850688|ref|YP_007312274.1| - 0.08 12.4 0.0 0.25 10.8 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_16 PF13191.6 gi|435850688|ref|YP_007312274.1| - 0.16 12.3 0.0 0.33 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain T2SSF PF00482.23 gi|435850689|ref|YP_007312275.1| - 4.2e-16 59.0 0.1 1.7e-10 41.0 0.2 3.8 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F Iso_dh PF00180.20 gi|435850690|ref|YP_007312276.1| - 6.8e-96 321.4 0.1 8.2e-96 321.2 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.19 gi|435850692|ref|YP_007312278.1| - 3.2e-19 69.6 0.0 4.8e-19 69.0 0.0 1.3 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|435850692|ref|YP_007312278.1| - 0.021 14.4 0.1 0.54 9.9 0.1 2.1 1 1 0 1 1 1 0 Aconitate hydratase 2 N-terminus STT3 PF02516.14 gi|435850693|ref|YP_007312279.1| - 3.7e-27 95.4 30.1 1.1e-25 90.6 30.1 2.1 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|435850693|ref|YP_007312279.1| - 2.8e-26 91.6 1.2 6.6e-26 90.4 1.2 1.7 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain Big_6 PF17936.1 gi|435850693|ref|YP_007312279.1| - 0.096 13.0 0.1 0.19 12.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial Ig domain Glyco_transf_4 PF13439.6 gi|435850694|ref|YP_007312280.1| - 2.2e-15 57.0 0.2 3.2e-15 56.5 0.2 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|435850694|ref|YP_007312280.1| - 4.7e-15 56.2 0.0 2.4e-14 53.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|435850694|ref|YP_007312280.1| - 1.4e-13 50.7 0.0 2.3e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|435850694|ref|YP_007312280.1| - 1.5e-07 31.6 2.3 2.6e-07 30.7 2.3 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|435850694|ref|YP_007312280.1| - 8.6e-07 29.3 0.0 1.8e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|435850695|ref|YP_007312281.1| - 2.6e-25 88.9 0.0 4.2e-25 88.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|435850695|ref|YP_007312281.1| - 4.5e-16 59.5 0.0 8.9e-16 58.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|435850695|ref|YP_007312281.1| - 2.7e-15 56.8 0.0 4e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|435850695|ref|YP_007312281.1| - 3.3e-12 46.6 0.0 9e-12 45.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|435850695|ref|YP_007312281.1| - 2.1e-11 44.0 0.4 6.7e-11 42.4 0.3 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 gi|435850695|ref|YP_007312281.1| - 2.8e-05 24.6 0.0 5.3e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain DUF5551 PF17705.1 gi|435850695|ref|YP_007312281.1| - 0.077 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5551) Glyco_transf_90 PF05686.12 gi|435850695|ref|YP_007312281.1| - 0.1 11.5 0.1 0.15 10.9 0.1 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 90 Polysacc_synt PF01943.17 gi|435850696|ref|YP_007312282.1| - 6e-21 75.0 36.6 6e-21 75.0 36.6 2.4 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|435850696|ref|YP_007312282.1| - 9.9e-21 74.3 22.3 9.9e-21 74.3 22.3 4.3 3 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|435850696|ref|YP_007312282.1| - 3.5e-17 62.6 18.9 3.5e-17 62.6 18.9 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|435850696|ref|YP_007312282.1| - 4.6e-09 35.4 45.5 6.8e-09 34.8 45.2 1.4 1 1 0 1 1 1 1 Lipid II flippase MurJ MatE PF01554.18 gi|435850696|ref|YP_007312282.1| - 4.3e-07 29.7 10.7 4.3e-07 29.7 10.7 3.8 3 2 0 3 3 3 1 MatE Glycos_transf_1 PF00534.20 gi|435850697|ref|YP_007312283.1| - 8.6e-15 54.7 0.0 2e-14 53.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|435850697|ref|YP_007312283.1| - 6.7e-13 49.2 0.0 1.6e-12 48.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|435850697|ref|YP_007312283.1| - 6.2e-09 36.1 0.0 1.2e-08 35.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUSP PF06337.12 gi|435850697|ref|YP_007312283.1| - 1.3 9.7 4.4 2.2 8.9 3.2 2.2 2 1 0 2 2 2 0 DUSP domain Glyco_transf_4 PF13439.6 gi|435850698|ref|YP_007312284.1| - 8.2e-09 35.7 0.0 1.5e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|435850698|ref|YP_007312284.1| - 0.00015 21.8 0.3 0.0028 17.7 0.1 2.4 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.20 gi|435850698|ref|YP_007312284.1| - 0.065 12.8 0.1 0.23 11.0 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|435850698|ref|YP_007312284.1| - 0.083 13.3 0.0 0.18 12.2 0.0 1.5 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain NTP_transferase PF00483.23 gi|435850699|ref|YP_007312285.1| - 1e-31 110.4 0.0 1.3e-31 110.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|435850699|ref|YP_007312285.1| - 4.1e-09 37.0 0.0 7.9e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.26 gi|435850699|ref|YP_007312285.1| - 0.00021 21.1 0.0 0.0003 20.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 IspD PF01128.19 gi|435850699|ref|YP_007312285.1| - 0.0077 16.0 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|435850699|ref|YP_007312285.1| - 0.012 15.5 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase MannoseP_isomer PF01050.18 gi|435850700|ref|YP_007312286.1| - 8.6e-58 194.5 0.3 1.5e-57 193.7 0.3 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.23 gi|435850700|ref|YP_007312286.1| - 1.6e-51 175.3 0.0 2.5e-51 174.7 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.11 gi|435850700|ref|YP_007312286.1| - 3.4e-11 42.7 0.0 6.6e-11 41.8 0.0 1.5 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.7 gi|435850700|ref|YP_007312286.1| - 5.1e-05 23.7 0.0 9.5e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain AraC_binding PF02311.19 gi|435850700|ref|YP_007312286.1| - 0.0027 17.6 0.0 0.006 16.5 0.0 1.5 1 0 0 1 1 1 1 AraC-like ligand binding domain IspD PF01128.19 gi|435850700|ref|YP_007312286.1| - 0.052 13.3 0.0 0.091 12.5 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DHODB_Fe-S_bind PF10418.9 gi|435850701|ref|YP_007312287.1| - 1.6e-13 50.2 2.6 1.6e-13 50.2 2.6 1.8 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|435850701|ref|YP_007312287.1| - 3.1e-06 27.8 0.0 7.8e-06 26.5 0.0 1.7 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain Fer2_3 PF13085.6 gi|435850701|ref|YP_007312287.1| - 0.025 14.6 0.1 0.045 13.8 0.1 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer4_20 PF14691.6 gi|435850702|ref|YP_007312288.1| - 1.1e-44 150.8 4.1 1.8e-44 150.1 4.1 1.4 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 gi|435850702|ref|YP_007312288.1| - 3.9e-36 124.8 1.1 5.6e-36 124.3 1.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|435850702|ref|YP_007312288.1| - 4.6e-14 52.7 2.1 5e-07 30.2 0.1 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|435850702|ref|YP_007312288.1| - 4.2e-12 45.9 0.9 0.00017 21.0 0.0 3.9 3 1 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|435850702|ref|YP_007312288.1| - 3.1e-09 36.9 1.3 5.3e-09 36.2 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|435850702|ref|YP_007312288.1| - 6.9e-08 32.9 0.7 0.016 15.7 0.1 2.7 2 1 0 2 2 2 2 Putative NAD(P)-binding FAD_oxidored PF12831.7 gi|435850702|ref|YP_007312288.1| - 1.9e-07 30.8 4.1 6.2e-06 25.8 0.1 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|435850702|ref|YP_007312288.1| - 2e-07 30.5 1.8 0.0014 18.0 0.2 2.5 2 1 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|435850702|ref|YP_007312288.1| - 3.2e-06 26.6 1.1 9.8e-06 25.0 0.1 2.1 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.24 gi|435850702|ref|YP_007312288.1| - 4.2e-06 26.1 0.6 4.2e-06 26.1 0.6 2.4 3 0 0 3 3 3 1 FAD binding domain HI0933_like PF03486.14 gi|435850702|ref|YP_007312288.1| - 1.9e-05 23.5 0.1 1.9e-05 23.5 0.1 2.6 3 0 0 3 3 3 1 HI0933-like protein GIDA PF01134.22 gi|435850702|ref|YP_007312288.1| - 2.2e-05 23.8 2.3 0.0014 17.8 0.1 3.0 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|435850702|ref|YP_007312288.1| - 4.6e-05 22.8 0.9 0.00023 20.5 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain Amino_oxidase PF01593.24 gi|435850702|ref|YP_007312288.1| - 0.00014 21.3 2.6 0.0013 18.1 0.1 2.7 2 1 1 3 3 3 1 Flavin containing amine oxidoreductase DAO PF01266.24 gi|435850702|ref|YP_007312288.1| - 0.00016 21.4 4.3 0.00025 20.7 0.6 2.7 3 0 0 3 3 3 1 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|435850702|ref|YP_007312288.1| - 0.001 18.3 0.2 5.3 6.1 0.0 3.2 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|435850702|ref|YP_007312288.1| - 0.0014 18.6 0.5 0.086 12.8 0.2 2.8 3 0 0 3 3 3 1 FAD-NAD(P)-binding ELFV_dehydrog PF00208.21 gi|435850702|ref|YP_007312288.1| - 0.0023 17.7 0.1 0.17 11.6 0.0 2.2 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase F420_oxidored PF03807.17 gi|435850702|ref|YP_007312288.1| - 0.0035 17.9 0.2 3.1 8.4 0.1 3.4 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|435850702|ref|YP_007312288.1| - 0.0089 15.4 0.0 2.6 7.3 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|435850702|ref|YP_007312288.1| - 0.0093 16.0 0.5 4 7.5 0.0 3.8 5 0 0 5 5 5 1 Shikimate / quinate 5-dehydrogenase Fer4_7 PF12838.7 gi|435850702|ref|YP_007312288.1| - 0.014 15.9 0.7 0.014 15.9 0.7 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|435850702|ref|YP_007312288.1| - 0.025 14.7 0.3 0.025 14.7 0.3 1.9 2 0 0 2 2 1 0 4Fe-4S dicluster domain 3HCDH_N PF02737.18 gi|435850702|ref|YP_007312288.1| - 0.035 14.0 0.3 0.2 11.6 0.1 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|435850702|ref|YP_007312288.1| - 0.057 12.3 1.5 0.076 11.8 0.1 1.8 2 0 0 2 2 2 0 Tryptophan halogenase YjeF_N PF03853.15 gi|435850702|ref|YP_007312288.1| - 0.06 13.2 0.0 3.9 7.3 0.0 2.3 2 0 0 2 2 2 0 YjeF-related protein N-terminus FMO-like PF00743.19 gi|435850702|ref|YP_007312288.1| - 0.089 11.2 0.0 1.9 6.8 0.0 2.1 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like Lycopene_cycl PF05834.12 gi|435850702|ref|YP_007312288.1| - 0.097 11.7 0.2 0.097 11.7 0.2 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.14 gi|435850702|ref|YP_007312288.1| - 0.097 12.2 0.0 0.73 9.4 0.0 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|435850702|ref|YP_007312288.1| - 0.13 12.0 0.6 0.3 10.7 0.3 1.8 2 0 0 2 2 1 0 Ketopantoate reductase PanE/ApbA Fer4_10 PF13237.6 gi|435850702|ref|YP_007312288.1| - 0.24 11.6 9.2 1.2 9.3 9.2 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain AdoHcyase_NAD PF00670.21 gi|435850702|ref|YP_007312288.1| - 0.28 11.3 2.8 5.1 7.1 0.0 3.1 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Fer4_2 PF12797.7 gi|435850702|ref|YP_007312288.1| - 1 9.6 9.4 0.058 13.5 2.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain PAPS_reduct PF01507.19 gi|435850703|ref|YP_007312289.1| - 4.3e-41 140.9 0.0 7.6e-41 140.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_10 PF13237.6 gi|435850703|ref|YP_007312289.1| - 8.3e-05 22.6 13.6 0.00031 20.8 13.6 2.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435850703|ref|YP_007312289.1| - 0.00017 21.7 9.6 0.00017 21.7 9.6 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|435850703|ref|YP_007312289.1| - 0.00042 20.0 6.6 0.00042 20.0 6.6 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|435850703|ref|YP_007312289.1| - 0.0012 19.0 6.7 0.0032 17.7 6.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435850703|ref|YP_007312289.1| - 0.0021 18.6 11.1 0.0021 18.6 11.1 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain UPF0113 PF03657.13 gi|435850703|ref|YP_007312289.1| - 0.003 17.8 0.0 0.0075 16.5 0.0 1.7 1 0 0 1 1 1 1 UPF0113 PUA domain Fer4_16 PF13484.6 gi|435850703|ref|YP_007312289.1| - 0.013 16.4 1.6 0.013 16.4 1.6 3.7 3 1 0 4 4 3 0 4Fe-4S double cluster binding domain NAD_synthase PF02540.17 gi|435850703|ref|YP_007312289.1| - 0.014 14.6 0.0 0.022 13.9 0.0 1.3 1 0 0 1 1 1 0 NAD synthase Fer4_8 PF13183.6 gi|435850703|ref|YP_007312289.1| - 0.02 15.3 17.8 0.058 13.8 0.9 3.8 4 0 0 4 4 4 0 4Fe-4S dicluster domain ATP_bind_3 PF01171.20 gi|435850703|ref|YP_007312289.1| - 0.091 12.5 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 PP-loop family PUA PF01472.20 gi|435850703|ref|YP_007312289.1| - 0.1 12.6 0.0 0.29 11.1 0.0 1.7 1 0 0 1 1 1 0 PUA domain LssY_C PF14067.6 gi|435850703|ref|YP_007312289.1| - 0.19 11.3 0.0 0.32 10.5 0.0 1.3 1 0 0 1 1 1 0 LssY C-terminus Fer4_21 PF14697.6 gi|435850703|ref|YP_007312289.1| - 4.4 7.5 21.2 1.6 8.9 5.8 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain AI-2E_transport PF01594.16 gi|435850704|ref|YP_007312290.1| - 4.1e-38 131.3 46.8 4.9e-38 131.1 46.8 1.0 1 0 0 1 1 1 1 AI-2E family transporter tRNA-Thr_ED PF08915.11 gi|435850705|ref|YP_007312291.1| - 7.2e-53 178.3 0.3 1.3e-52 177.5 0.3 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|435850705|ref|YP_007312291.1| - 1.1e-18 67.2 0.7 2.3e-18 66.1 0.7 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|435850705|ref|YP_007312291.1| - 7.9e-16 58.5 0.7 1.5e-15 57.7 0.7 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Acylphosphatase PF00708.18 gi|435850706|ref|YP_007312292.1| - 2.9e-26 91.7 0.0 3.2e-26 91.5 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase ThiI PF02568.14 gi|435850707|ref|YP_007312293.1| - 1.5e-54 184.6 0.0 2.2e-54 184.1 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|435850707|ref|YP_007312293.1| - 7.9e-18 64.9 0.0 5.4e-17 62.2 0.0 2.1 2 0 0 2 2 2 1 THUMP domain QueC PF06508.13 gi|435850707|ref|YP_007312293.1| - 0.00025 20.6 0.0 0.35 10.3 0.0 2.4 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|435850707|ref|YP_007312293.1| - 0.0014 17.5 0.0 0.0021 16.9 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase Arch_fla_DE PF04659.13 gi|435850708|ref|YP_007312294.1| - 5.4e-28 96.7 0.3 1.2e-27 95.6 0.3 1.6 1 0 0 1 1 1 1 Archaeal flagella protein EzrA PF06160.12 gi|435850708|ref|YP_007312294.1| - 1.2e-05 23.7 1.1 2e-05 23.0 1.1 1.3 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA FlaC_arch PF05377.11 gi|435850708|ref|YP_007312294.1| - 2.6e-05 24.5 7.3 0.25 11.7 0.6 4.3 3 1 1 4 4 4 2 Flagella accessory protein C (FlaC) Spc7 PF08317.11 gi|435850708|ref|YP_007312294.1| - 0.005 15.8 1.4 0.045 12.6 1.6 2.0 1 1 1 2 2 2 1 Spc7 kinetochore protein ATG16 PF08614.11 gi|435850708|ref|YP_007312294.1| - 0.0084 16.3 3.3 0.23 11.7 0.4 2.6 1 1 1 2 2 2 1 Autophagy protein 16 (ATG16) DUF4472 PF14739.6 gi|435850708|ref|YP_007312294.1| - 0.0085 16.8 1.0 0.39 11.5 0.4 2.4 1 1 1 2 2 2 1 Domain of unknown function (DUF4472) Baculo_PEP_C PF04513.12 gi|435850708|ref|YP_007312294.1| - 0.016 15.2 1.3 3 7.9 0.1 2.9 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Fib_alpha PF08702.10 gi|435850708|ref|YP_007312294.1| - 0.018 15.2 1.9 2.4 8.3 0.1 2.6 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family TelA PF05816.11 gi|435850708|ref|YP_007312294.1| - 0.03 13.4 0.7 0.066 12.3 0.5 1.4 1 1 0 1 1 1 0 Toxic anion resistance protein (TelA) CENP-F_leu_zip PF10473.9 gi|435850708|ref|YP_007312294.1| - 0.034 14.2 4.1 0.16 12.0 0.9 2.4 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Syntaxin_2 PF14523.6 gi|435850708|ref|YP_007312294.1| - 0.045 14.1 6.0 3.7 8.0 0.1 3.1 4 0 0 4 4 2 0 Syntaxin-like protein SKA2 PF16740.5 gi|435850708|ref|YP_007312294.1| - 0.052 13.3 0.5 28 4.5 0.0 3.2 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 2 YabA PF06156.13 gi|435850708|ref|YP_007312294.1| - 0.067 13.8 5.9 5.4 7.7 0.1 3.4 3 1 0 3 3 2 0 Initiation control protein YabA RNA_pol_Rpc82 PF05645.13 gi|435850708|ref|YP_007312294.1| - 0.069 12.9 0.3 7.2 6.3 0.0 2.3 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 DUF1664 PF07889.12 gi|435850708|ref|YP_007312294.1| - 0.095 12.7 6.1 1 9.4 0.3 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|435850708|ref|YP_007312294.1| - 0.11 12.9 2.0 39 4.6 0.0 3.4 1 1 3 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TMF_TATA_bd PF12325.8 gi|435850708|ref|YP_007312294.1| - 0.13 12.5 4.2 0.52 10.6 0.3 2.5 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF1216 PF06746.11 gi|435850708|ref|YP_007312294.1| - 0.13 12.2 5.9 0.64 10.0 2.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1216) DUF3450 PF11932.8 gi|435850708|ref|YP_007312294.1| - 0.15 11.4 1.5 0.76 9.0 0.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Prominin PF05478.11 gi|435850708|ref|YP_007312294.1| - 0.16 9.9 0.8 0.25 9.2 0.8 1.2 1 0 0 1 1 1 0 Prominin Laminin_II PF06009.12 gi|435850708|ref|YP_007312294.1| - 0.19 11.7 9.0 4.7 7.2 0.5 3.7 2 1 2 4 4 4 0 Laminin Domain II Filament PF00038.21 gi|435850708|ref|YP_007312294.1| - 0.19 11.2 2.6 4.4 6.8 0.1 2.2 1 1 0 2 2 2 0 Intermediate filament protein SF-assemblin PF06705.11 gi|435850708|ref|YP_007312294.1| - 0.24 10.7 2.4 1.1 8.6 0.3 2.2 1 1 0 2 2 2 0 SF-assemblin/beta giardin Laminin_I PF06008.14 gi|435850708|ref|YP_007312294.1| - 0.24 11.1 2.5 0.6 9.8 1.2 2.1 1 1 1 2 2 2 0 Laminin Domain I CLZ PF16526.5 gi|435850708|ref|YP_007312294.1| - 0.24 11.8 4.6 15 6.0 0.2 3.8 2 1 0 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Apolipoprotein PF01442.18 gi|435850708|ref|YP_007312294.1| - 0.29 11.0 2.0 5.1 6.9 2.0 2.5 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain Dynactin_p22 PF07426.11 gi|435850708|ref|YP_007312294.1| - 0.97 9.3 6.9 0.22 11.4 0.5 2.8 2 1 1 3 3 2 0 Dynactin subunit p22 DUF5344 PF17279.2 gi|435850708|ref|YP_007312294.1| - 1.1 9.9 6.5 0.35 11.5 0.2 3.0 3 0 0 3 3 2 0 Family of unknown function (DUF5344) Syntaxin PF00804.25 gi|435850708|ref|YP_007312294.1| - 1.2 8.7 6.4 3 7.5 0.3 2.7 3 0 0 3 3 3 0 Syntaxin CENP-H PF05837.12 gi|435850708|ref|YP_007312294.1| - 1.6 9.2 4.2 23 5.5 0.4 2.6 1 1 0 2 2 2 0 Centromere protein H (CENP-H) RmuC PF02646.16 gi|435850708|ref|YP_007312294.1| - 2 7.5 5.0 12 4.9 0.1 2.9 2 1 1 4 4 4 0 RmuC family COG2 PF06148.11 gi|435850708|ref|YP_007312294.1| - 2.4 8.2 6.5 2.3 8.3 0.9 2.8 2 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 GPDPase_memb PF10110.9 gi|435850709|ref|YP_007312295.1| - 1.2e-05 24.2 18.2 0.001 17.9 8.0 2.5 1 1 1 2 2 2 2 Membrane domain of glycerophosphoryl diester phosphodiesterase UPF0259 PF06790.11 gi|435850709|ref|YP_007312295.1| - 0.0058 16.4 23.3 0.04 13.7 18.5 2.2 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0259) DUF975 PF06161.11 gi|435850709|ref|YP_007312295.1| - 0.0075 16.1 19.9 0.027 14.2 19.9 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF975) PIRT PF15099.6 gi|435850709|ref|YP_007312295.1| - 0.14 11.8 0.1 0.14 11.8 0.1 2.4 2 1 0 2 2 2 0 Phosphoinositide-interacting protein family PufQ PF05398.11 gi|435850709|ref|YP_007312295.1| - 1.5 9.0 4.9 1.3 9.2 0.1 2.9 3 0 0 3 3 3 0 PufQ cytochrome subunit GPDPase_memb PF10110.9 gi|435850710|ref|YP_007312296.1| - 4.7e-05 22.3 15.0 0.0016 17.3 8.5 2.4 1 1 1 2 2 2 2 Membrane domain of glycerophosphoryl diester phosphodiesterase PIRT PF15099.6 gi|435850710|ref|YP_007312296.1| - 0.36 10.4 1.4 0.66 9.6 1.4 1.6 1 1 0 1 1 1 0 Phosphoinositide-interacting protein family DUF373 PF04123.13 gi|435850710|ref|YP_007312296.1| - 6.6 6.1 11.6 1.4 8.3 7.3 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF373) DUF3087 PF11286.8 gi|435850712|ref|YP_007312298.1| - 0.0072 15.8 2.9 0.0074 15.8 2.6 1.2 1 1 0 1 1 1 1 Protein of unknown function (DUF3087) Pilin_N PF07790.11 gi|435850713|ref|YP_007312299.1| - 3.9e-24 85.4 3.0 3.9e-24 85.4 3.0 1.8 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal DUF5371 PF17341.2 gi|435850714|ref|YP_007312300.1| - 3e-40 136.2 5.6 3.4e-40 136.1 5.6 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5371) ACT_6 PF13740.6 gi|435850715|ref|YP_007312301.1| - 2.9e-14 52.8 0.6 3.4e-14 52.6 0.6 1.1 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|435850715|ref|YP_007312301.1| - 1.5e-07 31.0 0.8 2e-07 30.6 0.8 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|435850715|ref|YP_007312301.1| - 2.1e-05 25.0 2.5 2.1e-05 25.0 1.7 1.4 2 0 0 2 2 2 1 ACT domain ACT_7 PF13840.6 gi|435850715|ref|YP_007312301.1| - 0.00082 19.1 0.3 0.0011 18.7 0.3 1.4 1 0 0 1 1 1 1 ACT domain UDPG_MGDP_dh_N PF03721.14 gi|435850715|ref|YP_007312301.1| - 0.0073 15.9 0.3 0.0076 15.8 0.3 1.1 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF711 PF05167.12 gi|435850716|ref|YP_007312302.1| - 4.4e-182 605.5 12.3 5.4e-182 605.2 12.3 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) SKI PF01202.22 gi|435850717|ref|YP_007312303.1| - 1.7e-29 103.0 0.0 1.9e-29 102.8 0.0 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_18 PF13238.6 gi|435850717|ref|YP_007312303.1| - 3.8e-05 24.2 0.0 5e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|435850717|ref|YP_007312303.1| - 0.0002 21.2 0.0 0.00024 20.9 0.0 1.5 1 1 0 1 1 1 1 Cytidylate kinase AAA_33 PF13671.6 gi|435850717|ref|YP_007312303.1| - 0.00024 21.3 0.0 0.00072 19.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|435850717|ref|YP_007312303.1| - 0.0018 18.7 0.0 0.0029 18.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cytidylate_kin2 PF13189.6 gi|435850717|ref|YP_007312303.1| - 0.0042 17.2 0.0 0.012 15.8 0.0 1.7 1 1 1 2 2 2 1 Cytidylate kinase-like family AAA_17 PF13207.6 gi|435850717|ref|YP_007312303.1| - 0.026 14.9 0.1 0.057 13.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|435850717|ref|YP_007312303.1| - 0.041 13.9 0.0 0.12 12.4 0.0 1.7 1 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|435850717|ref|YP_007312303.1| - 0.063 13.0 0.0 0.1 12.3 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|435850717|ref|YP_007312303.1| - 0.1 13.0 0.0 0.18 12.1 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|435850717|ref|YP_007312303.1| - 0.1 11.9 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI CbiM PF01891.16 gi|435850718|ref|YP_007312304.1| - 8.8e-53 179.2 23.2 9.8e-53 179.1 23.2 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region EbsA PF17255.2 gi|435850718|ref|YP_007312304.1| - 0.19 12.1 0.6 0.5 10.7 0.6 1.6 1 0 0 1 1 1 0 EbsA-like protein ThrE PF06738.12 gi|435850718|ref|YP_007312304.1| - 0.58 9.5 19.2 0.036 13.4 9.2 2.2 1 1 1 2 2 2 0 Putative threonine/serine exporter PDGLE PF13190.6 gi|435850719|ref|YP_007312305.1| - 4.2e-16 58.6 1.2 5.9e-16 58.1 1.2 1.2 1 0 0 1 1 1 1 PDGLE domain OppC_N PF12911.7 gi|435850719|ref|YP_007312305.1| - 0.036 14.1 2.8 0.15 12.0 0.1 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C SLATT_1 PF18181.1 gi|435850720|ref|YP_007312306.1| - 0.15 12.0 1.5 0.17 11.8 1.5 1.1 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 1 DUF2207 PF09972.9 gi|435850720|ref|YP_007312306.1| - 0.64 8.7 4.0 0.66 8.7 4.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) LPG_synthase_TM PF03706.13 gi|435850721|ref|YP_007312307.1| - 4.3e-24 85.6 31.2 5.1e-24 85.3 31.2 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DUF4713 PF15831.5 gi|435850721|ref|YP_007312307.1| - 0.53 10.8 5.2 0.8 10.2 3.2 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4713) Polysacc_deac_1 PF01522.21 gi|435850722|ref|YP_007312308.1| - 1.8e-16 60.2 0.0 2.7e-16 59.6 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|435850722|ref|YP_007312308.1| - 0.00022 21.0 0.0 0.00034 20.3 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) DUF2194 PF09960.9 gi|435850722|ref|YP_007312308.1| - 0.071 11.4 0.0 0.22 9.8 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein conserved in bacteria (DUF2194) Glycos_transf_1 PF00534.20 gi|435850723|ref|YP_007312309.1| - 6.5e-38 130.0 0.4 9.3e-38 129.5 0.4 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|435850723|ref|YP_007312309.1| - 1.2e-23 84.1 0.0 1.7e-23 83.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|435850723|ref|YP_007312309.1| - 5.4e-17 62.3 0.1 1e-16 61.4 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|435850723|ref|YP_007312309.1| - 2.7e-10 40.5 0.0 5.6e-10 39.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|435850723|ref|YP_007312309.1| - 1.2e-05 25.4 0.4 3.5e-05 23.9 0.2 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 gi|435850723|ref|YP_007312309.1| - 9.4e-05 22.9 0.0 0.00013 22.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain PIGA PF08288.12 gi|435850723|ref|YP_007312309.1| - 0.0011 19.6 0.0 0.0029 18.2 0.0 1.7 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) LPG_synthase_TM PF03706.13 gi|435850724|ref|YP_007312310.1| - 1e-34 120.5 25.0 2.5e-34 119.2 25.0 1.6 1 1 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region E1-E2_ATPase PF00122.20 gi|435850725|ref|YP_007312311.1| - 3.6e-48 163.5 0.2 3.6e-48 163.5 0.2 3.5 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|435850725|ref|YP_007312311.1| - 3.1e-19 70.1 0.1 8.1e-19 68.7 0.1 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|435850725|ref|YP_007312311.1| - 1e-16 60.3 0.1 2.6e-16 59.1 0.1 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase_C PF00689.21 gi|435850725|ref|YP_007312311.1| - 1.2e-16 61.0 12.2 1.2e-16 61.0 12.2 2.1 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Cation_ATPase PF13246.6 gi|435850725|ref|YP_007312311.1| - 7.7e-05 22.7 0.0 0.00017 21.6 0.0 1.6 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|435850725|ref|YP_007312311.1| - 0.00066 19.5 2.6 0.0012 18.6 1.0 2.0 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase DAHP_snth_FXD PF18152.1 gi|435850725|ref|YP_007312311.1| - 0.014 15.2 1.0 0.046 13.6 0.1 2.3 2 0 0 2 2 2 0 DAHP synthase ferredoxin-like domain CorA PF01544.18 gi|435850726|ref|YP_007312312.1| - 1.7e-59 201.6 7.8 2e-59 201.3 7.8 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF5446 PF17522.2 gi|435850726|ref|YP_007312312.1| - 0.79 9.9 7.7 5.6 7.2 1.4 2.6 2 0 0 2 2 2 0 Family of unknown function (DUF5446) DUF898 PF05987.13 gi|435850727|ref|YP_007312313.1| - 0.033 13.3 11.4 0.32 10.0 11.4 2.0 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF898) PulG PF11773.8 gi|435850727|ref|YP_007312313.1| - 0.14 12.0 0.6 6.4 6.7 0.0 2.5 2 0 0 2 2 2 0 Type II secretory pathway pseudopilin Stevor PF17410.2 gi|435850727|ref|YP_007312313.1| - 1.1 8.8 6.7 0.24 10.9 2.1 2.0 2 0 0 2 2 2 0 Subtelomeric Variable Open Reading frame Bac_export_2 PF01312.19 gi|435850727|ref|YP_007312313.1| - 6.1 6.0 6.6 43 3.2 5.7 2.3 1 1 0 1 1 1 0 FlhB HrpN YscU SpaS Family DUF2254 PF10011.9 gi|435850727|ref|YP_007312313.1| - 7.9 5.2 10.0 2.5 6.8 0.5 2.9 1 1 3 4 4 4 0 Predicted membrane protein (DUF2254) RDD PF06271.12 gi|435850727|ref|YP_007312313.1| - 9.5 6.4 20.3 0.34 11.1 1.7 3.5 2 2 1 3 3 3 0 RDD family FixS PF03597.15 gi|435850728|ref|YP_007312314.1| - 9e-09 34.9 1.2 1.1e-08 34.6 1.2 1.2 1 0 0 1 1 1 1 Cytochrome oxidase maturation protein cbb3-type IRK PF01007.20 gi|435850728|ref|YP_007312314.1| - 0.11 12.3 0.2 0.13 12.1 0.2 1.1 1 0 0 1 1 1 0 Inward rectifier potassium channel transmembrane domain COX1 PF00115.20 gi|435850729|ref|YP_007312315.1| - 1.2e-82 278.1 62.3 1.2e-82 278.1 62.3 2.2 1 1 1 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I FixO PF02433.15 gi|435850729|ref|YP_007312315.1| - 3.1e-32 111.8 0.3 1.3e-31 109.8 0.2 2.1 2 0 0 2 2 2 1 Cytochrome C oxidase, mono-heme subunit/FixO Cytochrome_CBB3 PF13442.6 gi|435850729|ref|YP_007312315.1| - 1.8e-26 92.2 0.1 6.3e-09 36.0 0.0 3.8 3 1 0 3 3 3 3 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 gi|435850729|ref|YP_007312315.1| - 4.4e-17 63.0 0.2 0.00032 21.8 0.0 4.3 3 2 0 3 3 3 3 Cytochrome c Cytochrom_C550 PF14495.6 gi|435850729|ref|YP_007312315.1| - 0.041 13.6 0.8 1.7 8.3 0.1 2.6 2 0 0 2 2 2 0 Cytochrome c-550 domain Haem_bd PF14376.6 gi|435850729|ref|YP_007312315.1| - 0.095 12.6 0.5 43 4.1 0.0 3.8 4 0 0 4 4 4 0 Haem-binding domain GYD PF08734.11 gi|435850730|ref|YP_007312316.1| - 0.022 14.7 0.0 0.023 14.6 0.0 1.1 1 0 0 1 1 1 0 GYD domain Cupredoxin_1 PF13473.6 gi|435850731|ref|YP_007312317.1| - 1.8e-12 47.3 0.1 2.1e-12 47.1 0.1 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|435850731|ref|YP_007312317.1| - 4.5e-11 43.1 1.1 7.3e-09 36.0 1.1 2.1 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family DUF2156 PF09924.9 gi|435850732|ref|YP_007312318.1| - 8.1e-87 291.0 0.0 1.1e-86 290.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2156) LPG_synthase_TM PF03706.13 gi|435850732|ref|YP_007312318.1| - 1.5e-10 41.2 23.1 1.5e-10 41.2 23.1 2.8 2 1 0 2 2 2 1 Lysylphosphatidylglycerol synthase TM region DUF2556 PF10831.8 gi|435850732|ref|YP_007312318.1| - 0.39 10.7 0.0 0.39 10.7 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2556) CbiQ PF02361.16 gi|435850733|ref|YP_007312319.1| - 1.5e-37 129.3 9.1 2.3e-37 128.8 9.1 1.2 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|435850734|ref|YP_007312320.1| - 9.3e-33 113.6 0.0 1.3e-32 113.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435850734|ref|YP_007312320.1| - 2e-14 54.1 0.6 1.8e-09 37.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|435850734|ref|YP_007312320.1| - 3.6e-10 39.7 0.0 5.2e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|435850734|ref|YP_007312320.1| - 0.0062 16.2 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|435850734|ref|YP_007312320.1| - 0.0069 16.9 0.1 0.012 16.1 0.1 1.4 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|435850734|ref|YP_007312320.1| - 0.0088 16.0 0.1 0.03 14.2 0.0 1.6 1 1 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|435850734|ref|YP_007312320.1| - 0.014 15.5 0.3 0.034 14.2 0.3 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase G-alpha PF00503.20 gi|435850734|ref|YP_007312320.1| - 0.022 13.9 0.0 0.023 13.8 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_28 PF13521.6 gi|435850734|ref|YP_007312320.1| - 0.057 13.7 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|435850734|ref|YP_007312320.1| - 0.065 12.9 0.1 0.44 10.2 0.1 1.9 2 0 0 2 2 2 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|435850734|ref|YP_007312320.1| - 0.084 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 gi|435850734|ref|YP_007312320.1| - 0.097 12.9 0.0 0.71 10.1 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.27 gi|435850735|ref|YP_007312321.1| - 4.1e-22 79.2 0.0 6.7e-22 78.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435850735|ref|YP_007312321.1| - 2.5e-09 37.4 6.0 0.00027 20.9 0.4 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|435850735|ref|YP_007312321.1| - 6.4e-05 22.5 0.5 0.0014 18.1 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|435850735|ref|YP_007312321.1| - 7.5e-05 22.4 0.1 0.00018 21.2 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|435850735|ref|YP_007312321.1| - 0.00027 21.4 0.1 0.0013 19.2 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|435850735|ref|YP_007312321.1| - 0.00078 19.3 0.3 0.0078 16.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain DUF815 PF05673.13 gi|435850735|ref|YP_007312321.1| - 0.0031 16.7 0.1 0.011 14.9 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF815) MMR_HSR1 PF01926.23 gi|435850735|ref|YP_007312321.1| - 0.0037 17.3 0.1 0.0052 16.9 0.1 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|435850735|ref|YP_007312321.1| - 0.0039 17.7 0.1 0.0061 17.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|435850735|ref|YP_007312321.1| - 0.0043 17.3 0.2 0.02 15.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|435850735|ref|YP_007312321.1| - 0.013 15.2 0.2 0.073 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 gi|435850735|ref|YP_007312321.1| - 0.024 14.4 0.0 0.039 13.7 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase IstB_IS21 PF01695.17 gi|435850735|ref|YP_007312321.1| - 0.036 13.8 0.0 0.1 12.3 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_7 PF12775.7 gi|435850735|ref|YP_007312321.1| - 0.045 13.3 0.0 0.071 12.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region RsgA_GTPase PF03193.16 gi|435850735|ref|YP_007312321.1| - 0.045 13.6 0.0 0.097 12.6 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase Rad17 PF03215.15 gi|435850735|ref|YP_007312321.1| - 0.082 12.8 0.1 7 6.5 0.0 2.3 2 0 0 2 2 2 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|435850735|ref|YP_007312321.1| - 0.12 12.7 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF87 PF01935.17 gi|435850735|ref|YP_007312321.1| - 0.13 12.3 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA PF00004.29 gi|435850735|ref|YP_007312321.1| - 0.15 12.5 0.0 0.54 10.7 0.0 1.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) FeoB_N PF02421.18 gi|435850735|ref|YP_007312321.1| - 0.16 11.5 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 Ferrous iron transport protein B AAA_10 PF12846.7 gi|435850735|ref|YP_007312321.1| - 0.17 10.8 0.0 0.56 9.1 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain PMSR PF01625.21 gi|435850736|ref|YP_007312322.1| - 3.6e-30 105.2 0.1 4.4e-30 104.9 0.1 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase NnrU PF07298.11 gi|435850737|ref|YP_007312323.1| - 3.5e-07 30.0 7.7 4.7e-07 29.5 7.7 1.2 1 0 0 1 1 1 1 NnrU protein PEMT PF04191.13 gi|435850737|ref|YP_007312323.1| - 0.0086 16.5 0.2 0.0086 16.5 0.2 1.9 2 0 0 2 2 2 1 Phospholipid methyltransferase TPR_12 PF13424.6 gi|435850738|ref|YP_007312324.1| - 1.2e-07 31.9 3.5 0.001 19.3 0.3 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|435850738|ref|YP_007312324.1| - 7.6e-05 22.4 0.4 0.25 11.2 0.1 3.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|435850738|ref|YP_007312324.1| - 0.0013 19.0 1.1 3.5 8.2 0.0 4.0 4 0 0 4 4 3 1 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|435850738|ref|YP_007312324.1| - 0.003 17.3 0.3 0.0084 15.9 0.0 1.8 2 0 0 2 2 2 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_14 PF13428.6 gi|435850738|ref|YP_007312324.1| - 0.0055 17.4 0.9 57 4.9 0.1 4.9 3 1 2 5 5 5 0 Tetratricopeptide repeat TAtT PF16811.5 gi|435850738|ref|YP_007312324.1| - 0.024 13.9 0.2 4.1 6.6 0.1 2.5 2 1 0 2 2 2 0 TRAP transporter T-component DUF627 PF04781.12 gi|435850738|ref|YP_007312324.1| - 0.024 14.6 1.3 7 6.7 0.0 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF627) YfdX PF10938.8 gi|435850738|ref|YP_007312324.1| - 0.044 13.7 0.4 0.77 9.7 0.0 2.4 2 0 0 2 2 2 0 YfdX protein TPR_8 PF13181.6 gi|435850738|ref|YP_007312324.1| - 0.051 13.8 14.8 1.1 9.7 0.3 4.7 6 0 0 6 6 5 0 Tetratricopeptide repeat SRP68 PF16969.5 gi|435850738|ref|YP_007312324.1| - 0.064 12.2 1.7 0.11 11.4 0.3 1.9 2 0 0 2 2 2 0 RNA-binding signal recognition particle 68 DUF1877 PF08974.10 gi|435850738|ref|YP_007312324.1| - 0.075 13.1 3.5 1.1 9.3 0.2 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF1877) TPR_21 PF09976.9 gi|435850738|ref|YP_007312324.1| - 0.099 12.3 1.2 0.37 10.5 0.1 2.2 2 1 0 2 2 2 0 Tetratricopeptide repeat-like domain TPR_7 PF13176.6 gi|435850738|ref|YP_007312324.1| - 0.15 12.1 2.4 17 5.8 0.1 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|435850738|ref|YP_007312324.1| - 0.22 11.7 9.6 3.3 8.0 0.1 4.7 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_3 PF07720.12 gi|435850738|ref|YP_007312324.1| - 2.9 8.0 5.7 5.5 7.1 0.1 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|435850738|ref|YP_007312324.1| - 4.5 8.1 4.9 1.2e+02 3.7 0.1 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat LrgA PF03788.14 gi|435850739|ref|YP_007312325.1| - 1.3e-29 102.0 9.5 1.6e-29 101.7 9.5 1.1 1 0 0 1 1 1 1 LrgA family YIEGIA PF14045.6 gi|435850739|ref|YP_007312325.1| - 0.012 14.5 1.1 0.015 14.2 1.1 1.3 1 0 0 1 1 1 0 YIEGIA protein LrgB PF04172.16 gi|435850740|ref|YP_007312326.1| - 1.1e-78 263.7 14.4 1.2e-78 263.5 14.4 1.0 1 0 0 1 1 1 1 LrgB-like family DNA_alkylation PF08713.11 gi|435850741|ref|YP_007312327.1| - 1.2e-59 201.6 2.1 1.4e-59 201.4 2.1 1.0 1 0 0 1 1 1 1 DNA alkylation repair enzyme Acetyltransf_19 PF18015.1 gi|435850741|ref|YP_007312327.1| - 0.065 13.5 0.5 1.4 9.1 0.3 2.3 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain VitK2_biosynth PF02621.14 gi|435850741|ref|YP_007312327.1| - 0.25 10.8 2.1 9.6 5.6 0.1 2.8 2 1 1 3 3 3 0 Menaquinone biosynthesis AAA PF00004.29 gi|435850742|ref|YP_007312328.1| - 7e-100 330.6 0.0 1.6e-49 167.7 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|435850742|ref|YP_007312328.1| - 1.5e-32 111.1 0.6 2.3e-15 56.1 0.1 2.6 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|435850742|ref|YP_007312328.1| - 4.7e-27 94.0 0.1 5.1e-26 90.7 0.2 2.6 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|435850742|ref|YP_007312328.1| - 2.8e-15 56.4 0.0 1.8e-07 31.1 0.0 2.9 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|435850742|ref|YP_007312328.1| - 1.3e-14 54.7 0.0 2.9e-06 27.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|435850742|ref|YP_007312328.1| - 3.6e-14 53.5 0.2 6e-05 23.5 0.1 3.9 2 2 1 3 3 3 2 AAA ATPase domain CDC48_2 PF02933.17 gi|435850742|ref|YP_007312328.1| - 8.3e-13 47.9 0.2 2.3e-12 46.5 0.2 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.14 gi|435850742|ref|YP_007312328.1| - 5.4e-12 45.9 2.0 0.0004 20.4 0.1 4.2 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|435850742|ref|YP_007312328.1| - 5.5e-12 46.1 0.6 0.0017 18.6 0.0 4.3 2 2 1 3 3 3 2 AAA domain TIP49 PF06068.13 gi|435850742|ref|YP_007312328.1| - 1.5e-11 44.1 0.2 7.2e-05 22.2 0.0 2.8 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|435850742|ref|YP_007312328.1| - 6.6e-10 39.3 0.0 0.0016 18.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|435850742|ref|YP_007312328.1| - 1.7e-09 37.8 0.0 0.0023 18.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|435850742|ref|YP_007312328.1| - 3.7e-09 36.5 0.1 0.0041 16.8 0.0 3.9 2 2 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|435850742|ref|YP_007312328.1| - 9.4e-08 31.7 0.6 0.0054 16.1 0.0 3.0 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|435850742|ref|YP_007312328.1| - 1.6e-07 31.3 0.2 0.014 15.2 0.0 3.0 3 1 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|435850742|ref|YP_007312328.1| - 1.6e-07 30.8 0.1 0.0024 17.2 0.0 2.8 3 0 0 3 3 2 2 Zeta toxin AAA_18 PF13238.6 gi|435850742|ref|YP_007312328.1| - 2.9e-07 31.1 0.0 0.015 15.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|435850742|ref|YP_007312328.1| - 8.3e-07 28.9 0.0 0.012 15.4 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_24 PF13479.6 gi|435850742|ref|YP_007312328.1| - 1e-06 28.6 0.0 0.053 13.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|435850742|ref|YP_007312328.1| - 1.2e-06 28.9 0.0 0.068 13.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|435850742|ref|YP_007312328.1| - 2.6e-06 26.8 0.0 0.023 13.9 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|435850742|ref|YP_007312328.1| - 3.3e-06 26.7 0.0 0.048 13.2 0.0 2.8 3 0 0 3 3 2 2 P-loop containing dynein motor region NACHT PF05729.12 gi|435850742|ref|YP_007312328.1| - 4e-06 26.9 0.1 0.3 11.0 0.0 3.7 3 1 0 3 3 3 2 NACHT domain TsaE PF02367.17 gi|435850742|ref|YP_007312328.1| - 4.2e-06 26.8 0.2 0.17 11.9 0.0 3.0 2 1 1 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|435850742|ref|YP_007312328.1| - 4.8e-06 26.9 0.0 0.06 13.7 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_17 PF13207.6 gi|435850742|ref|YP_007312328.1| - 1.7e-05 25.2 0.0 0.059 13.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.27 gi|435850742|ref|YP_007312328.1| - 2.9e-05 24.6 0.0 0.35 11.4 0.0 3.0 3 0 0 3 3 2 2 ABC transporter AAA_25 PF13481.6 gi|435850742|ref|YP_007312328.1| - 3.7e-05 23.4 4.3 0.83 9.2 0.0 4.1 3 1 0 3 3 3 2 AAA domain AAA_19 PF13245.6 gi|435850742|ref|YP_007312328.1| - 4.9e-05 23.7 1.9 0.05 13.9 0.0 3.1 2 1 1 3 3 3 1 AAA domain AAA_30 PF13604.6 gi|435850742|ref|YP_007312328.1| - 0.00011 22.0 0.2 0.35 10.6 0.0 3.2 3 0 0 3 3 3 1 AAA domain Vps4_C PF09336.10 gi|435850742|ref|YP_007312328.1| - 0.00017 21.5 0.4 0.17 11.9 0.0 2.7 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain TniB PF05621.11 gi|435850742|ref|YP_007312328.1| - 0.0002 20.8 0.1 1.5 8.2 0.0 3.8 5 1 0 6 6 4 2 Bacterial TniB protein ATPase_2 PF01637.18 gi|435850742|ref|YP_007312328.1| - 0.00021 21.3 0.1 0.74 9.7 0.0 3.2 2 2 0 2 2 2 1 ATPase domain predominantly from Archaea ATPase PF06745.13 gi|435850742|ref|YP_007312328.1| - 0.00034 20.1 3.2 0.55 9.5 0.1 3.5 2 2 1 3 3 3 1 KaiC Parvo_NS1 PF01057.17 gi|435850742|ref|YP_007312328.1| - 0.00038 19.6 0.2 0.87 8.6 0.0 2.5 3 0 0 3 3 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|435850742|ref|YP_007312328.1| - 0.00044 19.7 0.2 0.58 9.6 0.0 2.7 3 0 0 3 3 2 1 PhoH-like protein DUF2075 PF09848.9 gi|435850742|ref|YP_007312328.1| - 0.00057 19.2 0.0 0.17 11.1 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Cytidylate_kin2 PF13189.6 gi|435850742|ref|YP_007312328.1| - 0.00058 20.0 0.0 0.6 10.2 0.0 2.8 3 0 0 3 3 2 1 Cytidylate kinase-like family Sigma54_activ_2 PF14532.6 gi|435850742|ref|YP_007312328.1| - 0.0011 19.1 0.0 1.6 8.9 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain NB-ARC PF00931.22 gi|435850742|ref|YP_007312328.1| - 0.0017 17.6 0.0 1.3 8.2 0.0 2.5 2 0 0 2 2 2 1 NB-ARC domain Bac_DnaA PF00308.18 gi|435850742|ref|YP_007312328.1| - 0.0019 18.0 0.0 2.2 8.0 0.0 3.2 3 1 1 4 4 3 1 Bacterial dnaA protein NTPase_1 PF03266.15 gi|435850742|ref|YP_007312328.1| - 0.0027 17.6 3.7 5.9 6.8 0.0 4.7 3 2 0 4 4 4 0 NTPase AAA_11 PF13086.6 gi|435850742|ref|YP_007312328.1| - 0.006 16.4 0.0 1.6 8.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.25 gi|435850742|ref|YP_007312328.1| - 0.0061 16.2 0.0 2.7 7.6 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain CPT PF07931.12 gi|435850742|ref|YP_007312328.1| - 0.007 16.2 0.0 2 8.2 0.0 2.7 2 0 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein AFG1_ATPase PF03969.16 gi|435850742|ref|YP_007312328.1| - 0.015 14.2 0.0 1.2 8.0 0.0 2.5 3 0 0 3 3 3 0 AFG1-like ATPase Guanylate_kin PF00625.21 gi|435850742|ref|YP_007312328.1| - 0.017 14.9 0.3 5.1 6.7 0.0 3.9 2 2 2 4 4 4 0 Guanylate kinase MCM PF00493.23 gi|435850742|ref|YP_007312328.1| - 0.025 13.7 0.2 8.1 5.5 0.0 3.3 2 2 0 3 3 3 0 MCM P-loop domain Viral_helicase1 PF01443.18 gi|435850742|ref|YP_007312328.1| - 0.033 13.9 0.0 1.1 8.9 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase IPT PF01745.16 gi|435850742|ref|YP_007312328.1| - 0.033 13.6 0.1 10 5.4 0.0 2.6 2 0 0 2 2 2 0 Isopentenyl transferase AAA_29 PF13555.6 gi|435850742|ref|YP_007312328.1| - 0.06 13.1 0.0 14 5.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain KAP_NTPase PF07693.14 gi|435850742|ref|YP_007312328.1| - 0.075 12.3 0.1 4.8 6.3 0.1 2.9 2 1 1 3 3 3 0 KAP family P-loop domain ResIII PF04851.15 gi|435850742|ref|YP_007312328.1| - 0.075 13.0 0.3 28 4.6 0.1 3.1 3 2 1 4 4 3 0 Type III restriction enzyme, res subunit SKI PF01202.22 gi|435850742|ref|YP_007312328.1| - 0.085 13.0 0.1 14 5.8 0.0 2.7 2 0 0 2 2 2 0 Shikimate kinase Roc PF08477.13 gi|435850742|ref|YP_007312328.1| - 0.09 13.0 0.0 19 5.5 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Zot PF05707.12 gi|435850742|ref|YP_007312328.1| - 0.092 12.4 0.3 2.3 7.8 0.0 3.3 3 2 0 3 3 3 0 Zonular occludens toxin (Zot) Cytidylate_kin PF02224.18 gi|435850742|ref|YP_007312328.1| - 0.097 12.4 0.1 5.6 6.6 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase KTI12 PF08433.10 gi|435850742|ref|YP_007312328.1| - 0.14 11.6 0.1 12 5.3 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 PCNA_C PF02747.15 gi|435850742|ref|YP_007312328.1| - 0.16 12.1 0.0 1.2 9.3 0.0 2.5 2 0 0 2 2 1 0 Proliferating cell nuclear antigen, C-terminal domain OrfB_Zn_ribbon PF07282.11 gi|435850743|ref|YP_007312329.1| - 1.4e-22 79.4 0.3 3.5e-22 78.1 0.3 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|435850743|ref|YP_007312329.1| - 8.5e-14 51.8 1.0 8.5e-14 51.8 1.0 1.7 2 0 0 2 2 2 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|435850743|ref|YP_007312329.1| - 3.1e-12 45.8 0.2 8.9e-12 44.3 0.2 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain Exo_endo_phos_2 PF14529.6 gi|435850743|ref|YP_007312329.1| - 0.011 15.6 0.1 0.029 14.2 0.1 1.7 1 0 0 1 1 1 0 Endonuclease-reverse transcriptase RuvX PF03652.15 gi|435850743|ref|YP_007312329.1| - 0.033 14.6 0.0 0.16 12.4 0.0 2.2 2 1 0 2 2 2 0 Holliday junction resolvase Y1_Tnp PF01797.16 gi|435850744|ref|YP_007312330.1| - 7.8e-37 126.1 1.8 8.9e-37 125.9 1.8 1.0 1 0 0 1 1 1 1 Transposase IS200 like Peptidase_M76 PF09768.9 gi|435850744|ref|YP_007312330.1| - 0.034 13.9 0.0 0.038 13.8 0.0 1.2 1 0 0 1 1 1 0 Peptidase M76 family AMP-binding_C_2 PF14535.6 gi|435850745|ref|YP_007312331.1| - 3.9e-22 78.4 0.0 8.4e-22 77.3 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|435850745|ref|YP_007312331.1| - 7.5e-11 41.3 0.3 1.2e-10 40.6 0.0 1.4 2 0 0 2 2 2 1 AMP-binding enzyme GH3 PF03321.13 gi|435850745|ref|YP_007312331.1| - 8.3e-05 21.6 0.0 0.001 18.0 0.0 2.0 2 0 0 2 2 2 1 GH3 auxin-responsive promoter HisG PF01634.18 gi|435850746|ref|YP_007312332.1| - 1e-45 155.6 0.0 1.6e-45 154.9 0.0 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|435850746|ref|YP_007312332.1| - 9.8e-26 89.7 0.0 2.4e-25 88.5 0.0 1.7 1 0 0 1 1 1 1 HisG, C-terminal domain UPF0016 PF01169.19 gi|435850747|ref|YP_007312333.1| - 9.7e-42 141.2 16.7 6.3e-23 80.9 4.7 2.0 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 TauE PF01925.19 gi|435850747|ref|YP_007312333.1| - 4.6e-07 29.7 8.2 0.00057 19.6 0.1 2.2 1 1 1 2 2 2 2 Sulfite exporter TauE/SafE TerC PF03741.16 gi|435850747|ref|YP_007312333.1| - 7.2e-06 25.8 9.2 2e-05 24.4 9.2 1.6 1 1 0 1 1 1 1 Integral membrane protein TerC family Syndecan PF01034.20 gi|435850747|ref|YP_007312333.1| - 0.0012 18.7 0.1 0.0012 18.7 0.1 2.5 2 1 0 2 2 2 1 Syndecan domain DUF2304 PF10066.9 gi|435850747|ref|YP_007312333.1| - 0.0024 18.1 2.2 0.0024 18.1 2.2 2.5 1 1 1 2 2 2 2 Uncharacterized conserved protein (DUF2304) Mntp PF02659.15 gi|435850747|ref|YP_007312333.1| - 0.0034 17.2 7.2 0.012 15.3 7.2 1.9 1 1 0 1 1 1 1 Putative manganese efflux pump Gram_pos_anchor PF00746.21 gi|435850747|ref|YP_007312333.1| - 0.25 11.3 9.5 2.8 8.0 0.0 3.9 4 0 0 4 4 4 0 LPXTG cell wall anchor motif DUF4181 PF13789.6 gi|435850747|ref|YP_007312333.1| - 0.36 11.1 4.8 0.98 9.7 1.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4181) DsbD_2 PF13386.6 gi|435850747|ref|YP_007312333.1| - 1 9.3 10.2 1.6 8.6 1.5 2.2 1 1 1 2 2 2 0 Cytochrome C biogenesis protein transmembrane region DUF1059 PF06348.11 gi|435850748|ref|YP_007312334.1| - 0.0022 18.2 1.2 0.0033 17.6 1.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) DUF4930 PF16284.5 gi|435850748|ref|YP_007312334.1| - 0.048 13.6 0.2 0.054 13.5 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4930) FAD_binding_3 PF01494.19 gi|435850749|ref|YP_007312335.1| - 1.4e-17 63.9 0.2 9e-17 61.3 0.2 1.9 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.14 gi|435850749|ref|YP_007312335.1| - 1.4e-13 50.5 0.1 5.7e-07 28.8 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase DAO PF01266.24 gi|435850749|ref|YP_007312335.1| - 2.6e-09 37.1 1.9 6.3e-05 22.7 0.1 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|435850749|ref|YP_007312335.1| - 5.1e-09 35.3 1.0 4.1e-07 29.0 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.7 gi|435850749|ref|YP_007312335.1| - 1.3e-08 34.6 0.2 2e-08 34.1 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|435850749|ref|YP_007312335.1| - 6e-08 32.2 0.3 1.1e-07 31.3 0.3 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|435850749|ref|YP_007312335.1| - 8.9e-08 31.7 1.3 5.4e-07 29.1 1.1 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|435850749|ref|YP_007312335.1| - 1.5e-06 27.6 0.1 0.0013 17.9 0.3 2.3 2 1 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|435850749|ref|YP_007312335.1| - 5.4e-06 25.9 1.5 0.011 15.0 0.1 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|435850749|ref|YP_007312335.1| - 4.7e-05 23.5 0.2 0.00014 22.0 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|435850749|ref|YP_007312335.1| - 7e-05 22.1 2.6 0.00034 19.8 0.3 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|435850749|ref|YP_007312335.1| - 7.7e-05 22.0 0.1 0.00016 21.0 0.1 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 gi|435850749|ref|YP_007312335.1| - 0.032 14.8 1.4 0.25 12.0 0.1 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GATase_3 PF07685.14 gi|435850750|ref|YP_007312336.1| - 4.6e-41 140.6 0.2 7.9e-41 139.8 0.2 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|435850750|ref|YP_007312336.1| - 6.5e-19 68.3 0.0 1.2e-18 67.4 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|435850750|ref|YP_007312336.1| - 6.8e-17 61.9 2.7 1.3e-14 54.5 2.7 2.5 1 1 0 1 1 1 1 AAA domain Peptidase_S51 PF03575.17 gi|435850750|ref|YP_007312336.1| - 0.011 15.4 0.0 0.098 12.3 0.0 2.1 2 0 0 2 2 2 0 Peptidase family S51 MobB PF03205.14 gi|435850750|ref|YP_007312336.1| - 0.028 14.3 0.0 0.081 12.8 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF1611 PF07755.11 gi|435850750|ref|YP_007312336.1| - 0.029 13.7 0.1 1.3 8.3 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain SRP54 PF00448.22 gi|435850750|ref|YP_007312336.1| - 0.15 11.7 0.3 7.9 6.1 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SNO PF01174.19 gi|435850750|ref|YP_007312336.1| - 0.15 11.9 0.1 0.39 10.6 0.0 1.6 2 0 0 2 2 2 0 SNO glutamine amidotransferase family Fer4_NifH PF00142.18 gi|435850751|ref|YP_007312337.1| - 2.9e-90 302.4 0.8 3.3e-90 302.2 0.8 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|435850751|ref|YP_007312337.1| - 8e-11 41.9 0.1 1.8e-10 40.7 0.1 1.6 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|435850751|ref|YP_007312337.1| - 1.4e-09 38.1 0.0 2.6e-09 37.2 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|435850751|ref|YP_007312337.1| - 3.3e-08 33.7 0.9 4.4e-08 33.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|435850751|ref|YP_007312337.1| - 1.3e-07 31.2 0.5 1e-06 28.1 0.2 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_24 PF13479.6 gi|435850751|ref|YP_007312337.1| - 2.6e-05 24.1 0.0 4.9e-05 23.1 0.0 1.5 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|435850751|ref|YP_007312337.1| - 9.2e-05 21.5 0.1 0.00014 20.9 0.1 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MipZ PF09140.11 gi|435850751|ref|YP_007312337.1| - 0.0014 17.9 0.3 0.0076 15.6 0.0 2.0 2 0 0 2 2 2 1 ATPase MipZ SRP54 PF00448.22 gi|435850751|ref|YP_007312337.1| - 0.0046 16.6 0.0 0.0088 15.7 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|435850751|ref|YP_007312337.1| - 0.016 15.6 0.1 0.093 13.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ATP_bind_1 PF03029.17 gi|435850751|ref|YP_007312337.1| - 0.027 14.2 0.4 1.9 8.2 0.1 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_7 PF12775.7 gi|435850751|ref|YP_007312337.1| - 0.028 14.0 0.0 0.044 13.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|435850751|ref|YP_007312337.1| - 0.033 13.8 0.3 0.061 12.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF1611 PF07755.11 gi|435850751|ref|YP_007312337.1| - 0.06 12.6 0.1 0.36 10.1 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain IstB_IS21 PF01695.17 gi|435850751|ref|YP_007312337.1| - 0.07 12.9 0.2 0.12 12.1 0.2 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Oxidored_nitro PF00148.19 gi|435850752|ref|YP_007312338.1| - 2.7e-17 62.6 0.1 4.2e-17 62.0 0.1 1.5 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase SHOCT PF09851.9 gi|435850752|ref|YP_007312338.1| - 0.0099 15.6 0.4 0.024 14.4 0.4 1.7 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.12 gi|435850752|ref|YP_007312338.1| - 0.029 14.4 0.1 0.056 13.5 0.1 1.4 1 0 0 1 1 1 0 Gas vesicle protein G Mur_ligase_M PF08245.12 gi|435850753|ref|YP_007312339.1| - 0.00028 21.0 0.0 0.00056 20.0 0.0 1.5 1 0 0 1 1 1 1 Mur ligase middle domain HEM4 PF02602.15 gi|435850753|ref|YP_007312339.1| - 0.14 11.5 0.0 0.29 10.4 0.0 1.5 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD DUF2150 PF09920.9 gi|435850754|ref|YP_007312340.1| - 2.6e-69 233.0 4.3 3.1e-69 232.7 4.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) NTP_transf_4 PF13562.6 gi|435850754|ref|YP_007312340.1| - 0.16 12.1 1.3 7.3 6.8 0.3 2.7 2 1 1 3 3 3 0 Sugar nucleotidyl transferase UPF0179 PF03684.13 gi|435850755|ref|YP_007312341.1| - 4.7e-50 169.1 0.2 5.3e-50 168.9 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.6 gi|435850755|ref|YP_007312341.1| - 0.038 14.2 0.3 0.068 13.4 0.3 1.4 1 0 0 1 1 1 0 Transposase DDE domain Fe-ADH_2 PF13685.6 gi|435850756|ref|YP_007312342.1| - 3.6e-72 243.1 3.1 4.3e-72 242.8 3.1 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|435850756|ref|YP_007312342.1| - 1.5e-22 79.9 4.9 8.4e-22 77.5 4.9 1.8 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|435850756|ref|YP_007312342.1| - 3e-07 29.9 0.1 8.9e-07 28.3 0.1 1.7 1 1 0 1 1 1 1 3-dehydroquinate synthase LPP20 PF02169.16 gi|435850756|ref|YP_007312342.1| - 0.035 14.5 0.0 0.09 13.1 0.0 1.6 1 0 0 1 1 1 0 LPP20 lipoprotein DUF63 PF01889.17 gi|435850757|ref|YP_007312343.1| - 5.3e-108 361.3 19.0 5.9e-108 361.2 19.0 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF3367 PF11847.8 gi|435850757|ref|YP_007312343.1| - 7.5 4.3 6.4 1.1 7.0 0.5 2.0 1 1 1 2 2 2 0 Alpha-(1->3)-arabinofuranosyltransferase SpoIIM PF01944.17 gi|435850758|ref|YP_007312344.1| - 8.8e-31 107.1 22.3 1.1e-30 106.8 22.3 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M DUF1297 PF06973.12 gi|435850759|ref|YP_007312345.1| - 1e-76 256.7 0.0 1.4e-76 256.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|435850759|ref|YP_007312345.1| - 2.4e-44 150.2 0.0 3.8e-44 149.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) GTP_EFTU PF00009.27 gi|435850760|ref|YP_007312346.1| - 1.5e-32 112.7 0.6 1.4e-31 109.5 0.6 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|435850760|ref|YP_007312346.1| - 1e-30 105.8 0.6 2.6e-30 104.5 0.6 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|435850760|ref|YP_007312346.1| - 6.3e-06 26.5 0.1 2e-05 24.9 0.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|435850760|ref|YP_007312346.1| - 9.5e-06 25.6 2.0 5e-05 23.3 0.2 2.2 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|435850760|ref|YP_007312346.1| - 0.00025 21.0 0.1 0.00053 20.0 0.1 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|435850760|ref|YP_007312346.1| - 0.00036 20.6 0.0 0.001 19.1 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|435850760|ref|YP_007312346.1| - 0.00096 18.9 2.9 0.44 10.3 0.5 3.1 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation Nop10p PF04135.12 gi|435850760|ref|YP_007312346.1| - 0.0036 17.3 0.9 0.0065 16.5 0.9 1.4 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family cobW PF02492.19 gi|435850760|ref|YP_007312346.1| - 0.028 14.0 0.4 0.38 10.3 0.1 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.18 gi|435850760|ref|YP_007312346.1| - 0.11 12.0 1.6 14 5.2 0.5 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B PIN_9 PF18477.1 gi|435850761|ref|YP_007312347.1| - 5e-45 152.5 0.3 5.7e-45 152.4 0.3 1.0 1 0 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|435850761|ref|YP_007312347.1| - 0.00014 22.1 0.1 0.00033 20.9 0.1 1.5 1 1 1 2 2 2 1 PIN domain DUF188 PF02639.14 gi|435850761|ref|YP_007312347.1| - 0.0013 18.4 0.1 0.0017 18.1 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_5 PF08745.11 gi|435850761|ref|YP_007312347.1| - 0.0014 18.1 0.1 0.047 13.1 0.1 2.1 1 1 1 2 2 2 1 PINc domain ribonuclease DDE_Tnp_1 PF01609.21 gi|435850762|ref|YP_007312348.1| - 1.2e-10 41.4 0.9 2.4e-10 40.4 0.9 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|435850762|ref|YP_007312348.1| - 0.00092 19.2 0.0 0.0026 17.7 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) SHS2_Rpb7-N PF03876.17 gi|435850763|ref|YP_007312349.1| - 6.1e-20 71.4 0.1 1.1e-19 70.6 0.1 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|435850763|ref|YP_007312349.1| - 1.4e-12 47.8 0.5 2.3e-12 47.0 0.1 1.6 2 0 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|435850763|ref|YP_007312349.1| - 0.0056 16.9 0.0 0.0083 16.4 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit Rpc25 DUF826 PF05696.11 gi|435850763|ref|YP_007312349.1| - 0.071 13.2 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF826) Spt4 PF06093.13 gi|435850764|ref|YP_007312350.1| - 2.3e-13 50.0 0.9 2.8e-13 49.8 0.9 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DUF359 PF04019.12 gi|435850765|ref|YP_007312351.1| - 1.6e-42 144.1 0.1 2e-42 143.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Ribosomal_S24e PF01282.19 gi|435850766|ref|YP_007312352.1| - 1.2e-26 92.5 0.1 1.5e-26 92.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|435850767|ref|YP_007312353.1| - 4.4e-21 74.8 4.9 4.8e-21 74.6 4.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a Ribosomal_L37e PF01907.19 gi|435850767|ref|YP_007312353.1| - 2.1e-06 27.8 2.8 2.5e-06 27.5 2.8 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e DUF1451 PF07295.11 gi|435850767|ref|YP_007312353.1| - 0.0027 17.7 1.6 0.0029 17.6 1.6 1.0 1 0 0 1 1 1 1 Zinc-ribbon containing domain OrfB_Zn_ribbon PF07282.11 gi|435850767|ref|YP_007312353.1| - 0.0039 17.1 1.2 0.0043 16.9 1.2 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|435850767|ref|YP_007312353.1| - 0.0044 16.7 3.4 0.28 11.0 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain IBR PF01485.21 gi|435850767|ref|YP_007312353.1| - 0.0092 16.2 0.4 0.0097 16.1 0.4 1.1 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain DZR PF12773.7 gi|435850767|ref|YP_007312353.1| - 0.0097 15.9 3.0 0.022 14.8 3.0 1.5 1 1 0 1 1 1 1 Double zinc ribbon Lar_restr_allev PF14354.6 gi|435850767|ref|YP_007312353.1| - 0.011 16.1 1.9 0.014 15.7 1.9 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|435850767|ref|YP_007312353.1| - 0.012 15.0 5.1 0.097 12.1 5.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|435850767|ref|YP_007312353.1| - 0.023 14.4 7.5 0.087 12.5 7.5 1.8 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DUF2387 PF09526.10 gi|435850767|ref|YP_007312353.1| - 0.035 14.3 1.3 0.055 13.6 1.3 1.4 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) Nudix_N_2 PF14803.6 gi|435850767|ref|YP_007312353.1| - 0.038 13.9 6.8 0.33 10.9 5.7 2.3 1 1 1 2 2 2 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|435850767|ref|YP_007312353.1| - 0.044 13.8 5.7 0.096 12.7 5.6 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain GFA PF04828.14 gi|435850767|ref|YP_007312353.1| - 0.047 14.0 2.1 0.21 12.0 0.1 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme HypA PF01155.19 gi|435850767|ref|YP_007312353.1| - 0.11 12.5 0.9 0.13 12.3 0.9 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ADK_lid PF05191.14 gi|435850767|ref|YP_007312353.1| - 0.16 12.0 3.6 3 7.9 1.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf_C2H2_10 PF18414.1 gi|435850767|ref|YP_007312353.1| - 0.17 11.4 1.1 7.4 6.2 0.1 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger zinc_ribbon_13 PF09855.9 gi|435850767|ref|YP_007312353.1| - 0.33 11.2 4.4 0.78 10.0 0.8 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) TF_Zn_Ribbon PF08271.12 gi|435850767|ref|YP_007312353.1| - 0.34 10.5 4.4 0.77 9.3 4.4 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding zf-ACC PF17848.1 gi|435850767|ref|YP_007312353.1| - 0.34 11.0 4.4 0.8 9.8 0.2 2.3 1 1 2 3 3 3 0 Acetyl-coA carboxylase zinc finger domain Zn-ribbon_8 PF09723.10 gi|435850767|ref|YP_007312353.1| - 0.52 10.5 5.2 13 6.0 5.2 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|435850767|ref|YP_007312353.1| - 2.6 7.7 8.8 0.74 9.5 1.9 2.6 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF2162 PF09930.9 gi|435850768|ref|YP_007312354.1| - 3.2e-68 229.5 20.6 3.6e-68 229.3 20.6 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) Scs3p PF10261.9 gi|435850768|ref|YP_007312354.1| - 0.024 14.1 0.0 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 Inositol phospholipid synthesis and fat-storage-inducing TM CD20 PF04103.15 gi|435850768|ref|YP_007312354.1| - 4 7.5 18.1 2.8 8.0 14.2 2.4 1 1 1 2 2 2 0 CD20-like family MotA_ExbB PF01618.16 gi|435850769|ref|YP_007312355.1| - 5e-12 45.7 0.2 8.1e-12 45.0 0.2 1.5 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family VIT1 PF01988.19 gi|435850769|ref|YP_007312355.1| - 0.12 12.2 1.8 0.13 12.1 0.6 1.6 1 1 1 2 2 2 0 VIT family DUF2149 PF09919.9 gi|435850770|ref|YP_007312356.1| - 1.1e-33 115.3 0.2 1.3e-33 115.1 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) CobN-Mg_chel PF02514.16 gi|435850771|ref|YP_007312357.1| - 0 1108.8 6.9 0 1101.9 3.5 2.1 2 0 0 2 2 2 2 CobN/Magnesium Chelatase Pex14_N PF04695.13 gi|435850771|ref|YP_007312357.1| - 0.15 12.7 1.4 0.33 11.6 1.4 1.5 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region CobN-Mg_chel PF02514.16 gi|435850772|ref|YP_007312358.1| - 3.4e-290 965.5 1.1 5e-290 965.0 1.1 1.2 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CobN-Mg_chel PF02514.16 gi|435850773|ref|YP_007312359.1| - 0 1098.9 2.3 0 1098.5 2.3 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CarboxypepD_reg PF13620.6 gi|435850773|ref|YP_007312359.1| - 1.1e-27 96.1 26.2 4.5e-07 30.1 1.3 5.8 5 1 0 5 5 5 4 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|435850773|ref|YP_007312359.1| - 3.6e-12 46.1 8.8 0.056 13.5 0.1 5.1 4 0 0 4 4 4 4 CarboxypepD_reg-like domain DUF2012 PF09430.10 gi|435850773|ref|YP_007312359.1| - 2.1e-09 37.5 3.4 0.058 13.5 0.0 4.7 4 0 0 4 4 4 2 Protein of unknown function (DUF2012) SdrD_B PF17210.3 gi|435850773|ref|YP_007312359.1| - 5.6e-09 36.2 17.3 0.11 12.7 0.0 5.4 5 0 0 5 5 5 4 SdrD B-like domain SpaA PF17802.1 gi|435850773|ref|YP_007312359.1| - 1.1e-08 35.3 13.2 0.37 11.1 0.1 4.8 3 1 1 4 4 4 4 Prealbumin-like fold domain SoxE PF06525.11 gi|435850773|ref|YP_007312359.1| - 4e-07 29.6 14.1 0.18 11.3 0.1 5.1 3 2 2 5 5 5 4 Sulfocyanin (SoxE) domain fn3_3 PF14686.6 gi|435850773|ref|YP_007312359.1| - 0.00077 19.2 13.3 0.54 10.1 0.1 5.8 5 0 0 5 5 5 2 Polysaccharide lyase family 4, domain II DUF1456 PF07308.13 gi|435850773|ref|YP_007312359.1| - 0.056 13.8 0.0 0.24 11.8 0.0 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1456) PfkB PF00294.24 gi|435850774|ref|YP_007312360.1| - 2.4e-46 158.5 0.0 2.8e-46 158.2 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|435850774|ref|YP_007312360.1| - 1.4e-08 34.4 0.0 2.1e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|435850774|ref|YP_007312360.1| - 0.00031 20.3 0.1 0.00043 19.8 0.1 1.1 1 0 0 1 1 1 1 Carbohydrate kinase Big_9 PF17963.1 gi|435850775|ref|YP_007312361.1| - 9.1e-23 80.8 53.9 6.1e-07 30.1 3.0 8.2 9 0 0 9 9 9 5 Bacterial Ig domain He_PIG PF05345.12 gi|435850775|ref|YP_007312361.1| - 2.5e-18 66.0 28.5 5.6e-06 26.5 1.5 7.5 7 0 0 7 7 7 5 Putative Ig domain Peptidase_S8 PF00082.22 gi|435850775|ref|YP_007312361.1| - 1.3e-12 47.7 4.3 1.3e-12 47.7 4.3 3.1 2 1 1 3 3 3 1 Subtilase family Cadherin_5 PF17892.1 gi|435850775|ref|YP_007312361.1| - 0.0023 17.9 25.9 0.0035 17.3 1.8 5.7 6 0 0 6 6 6 2 Cadherin-like domain fn3 PF00041.21 gi|435850775|ref|YP_007312361.1| - 0.026 14.9 5.7 1.1 9.7 2.1 4.4 3 1 0 3 3 3 0 Fibronectin type III domain PPC PF04151.15 gi|435850775|ref|YP_007312361.1| - 0.11 13.7 0.3 0.11 13.7 0.3 5.9 6 1 1 7 7 7 0 Bacterial pre-peptidase C-terminal domain LVIVD PF08309.11 gi|435850776|ref|YP_007312362.1| - 1.4e-75 248.4 63.9 1.6e-16 59.3 2.2 8.0 6 2 1 7 7 7 7 LVIVD repeat Beta_propel PF09826.9 gi|435850776|ref|YP_007312362.1| - 1.3e-05 24.3 2.6 0.047 12.5 0.1 4.5 1 1 2 3 3 3 2 Beta propeller domain He_PIG PF05345.12 gi|435850776|ref|YP_007312362.1| - 2.1e-05 24.6 0.2 2.1e-05 24.6 0.2 4.9 4 0 0 4 4 4 1 Putative Ig domain NHL PF01436.21 gi|435850776|ref|YP_007312362.1| - 0.19 11.8 8.7 1.8 8.7 0.3 4.2 4 0 0 4 4 4 0 NHL repeat FIVAR PF07554.13 gi|435850777|ref|YP_007312363.1| - 4.5e-19 69.0 24.8 1.8e-07 31.8 8.1 3.7 3 0 0 3 3 3 3 FIVAR domain DUF4959 PF16323.5 gi|435850777|ref|YP_007312363.1| - 1.9e-06 28.1 0.0 1 9.7 0.0 4.0 1 1 2 3 3 3 2 Domain of unknown function (DUF4959) CAMP_factor PF07373.11 gi|435850777|ref|YP_007312363.1| - 2.7e-05 23.9 10.8 0.29 10.7 0.1 3.4 3 0 0 3 3 3 3 CAMP factor (Cfa) HsbA PF12296.8 gi|435850777|ref|YP_007312363.1| - 0.0055 17.1 14.9 1.1 9.7 1.7 3.8 3 0 0 3 3 3 3 Hydrophobic surface binding protein A DUF2846 PF11008.8 gi|435850777|ref|YP_007312363.1| - 0.093 12.8 0.1 4.8 7.3 0.0 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF2846) T3SSipB PF16535.5 gi|435850777|ref|YP_007312363.1| - 0.12 12.9 25.5 2.6 8.5 0.2 3.5 2 1 1 3 3 3 0 Type III cell invasion protein SipB DUF148 PF02520.17 gi|435850777|ref|YP_007312363.1| - 0.13 12.4 6.1 15 5.8 0.0 3.5 2 1 1 3 3 3 0 Domain of unknown function DUF148 Peptidase_M22 PF00814.25 gi|435850778|ref|YP_007312364.1| - 3.8e-86 289.1 0.1 4.5e-86 288.9 0.1 1.0 1 0 0 1 1 1 1 Glycoprotease family Carbam_trans_N PF02543.15 gi|435850778|ref|YP_007312364.1| - 0.0055 16.4 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 Carbamoyltransferase N-terminus RIO1 PF01163.22 gi|435850779|ref|YP_007312365.1| - 3.6e-10 39.7 0.0 8.1e-10 38.6 0.0 1.5 1 1 0 1 1 1 1 RIO1 family APH PF01636.23 gi|435850779|ref|YP_007312365.1| - 1.3e-09 38.4 0.2 6.6e-06 26.2 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|435850779|ref|YP_007312365.1| - 2.8e-08 33.4 0.0 4e-06 26.3 0.0 2.2 1 1 1 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|435850779|ref|YP_007312365.1| - 5e-06 26.1 0.0 5.5e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Choline_kinase PF01633.20 gi|435850779|ref|YP_007312365.1| - 0.00011 21.9 0.2 0.27 10.8 0.1 2.2 1 1 1 2 2 2 2 Choline/ethanolamine kinase WaaY PF06176.11 gi|435850779|ref|YP_007312365.1| - 0.00048 19.8 0.1 0.0006 19.5 0.1 1.3 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.17 gi|435850779|ref|YP_007312365.1| - 0.0011 18.3 0.0 0.0012 18.2 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase DUF1679 PF07914.11 gi|435850779|ref|YP_007312365.1| - 0.0055 15.6 0.0 0.0069 15.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) EcKinase PF02958.20 gi|435850779|ref|YP_007312365.1| - 0.0097 15.3 0.1 0.011 15.0 0.1 1.3 1 1 0 1 1 1 1 Ecdysteroid kinase Fructosamin_kin PF03881.14 gi|435850779|ref|YP_007312365.1| - 0.023 13.9 0.0 0.04 13.1 0.0 1.5 1 1 0 1 1 1 0 Fructosamine kinase Kinase-like PF14531.6 gi|435850779|ref|YP_007312365.1| - 0.14 11.4 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 Kinase-like Ham1p_like PF01725.16 gi|435850780|ref|YP_007312366.1| - 9.6e-52 175.6 0.0 1.1e-51 175.5 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Arch_flagellin PF01917.16 gi|435850782|ref|YP_007312368.1| - 1.9e-32 112.7 4.5 1.2e-19 71.1 5.4 2.1 1 1 1 2 2 2 2 Archaebacterial flagellin Cyclase PF04199.13 gi|435850783|ref|YP_007312369.1| - 6.8e-23 81.4 0.0 8.2e-23 81.1 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase PHP PF02811.19 gi|435850784|ref|YP_007312370.1| - 3.8e-10 40.3 0.4 5.1e-10 39.9 0.4 1.4 1 1 0 1 1 1 1 PHP domain RNase_P_p30 PF01876.16 gi|435850784|ref|YP_007312370.1| - 2.2e-06 27.3 0.1 3.3e-06 26.7 0.1 1.3 1 0 0 1 1 1 1 RNase P subunit p30 SpoU_methylase PF00588.19 gi|435850784|ref|YP_007312370.1| - 0.0061 16.7 0.5 1.6 8.9 0.0 2.5 1 1 1 2 2 2 2 SpoU rRNA Methylase family AAA_26 PF13500.6 gi|435850784|ref|YP_007312370.1| - 0.042 13.7 0.1 0.066 13.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain DUF3280 PF11684.8 gi|435850784|ref|YP_007312370.1| - 0.13 12.7 0.3 21 5.5 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2380) DUF211 PF02680.14 gi|435850785|ref|YP_007312371.1| - 4.7e-40 135.6 1.1 5.3e-40 135.5 1.1 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 HMA PF00403.26 gi|435850785|ref|YP_007312371.1| - 0.088 13.3 0.8 0.18 12.3 0.1 1.9 2 0 0 2 2 2 0 Heavy-metal-associated domain FtsJ PF01728.19 gi|435850786|ref|YP_007312372.1| - 2.2e-58 197.3 0.0 2.8e-58 197.0 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|435850786|ref|YP_007312372.1| - 2e-12 46.9 2.1 3.4e-12 46.2 2.1 1.4 1 0 0 1 1 1 1 TRAM domain Methyltransf_23 PF13489.6 gi|435850786|ref|YP_007312372.1| - 0.00014 21.8 0.0 0.0005 19.9 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|435850786|ref|YP_007312372.1| - 0.00099 18.9 0.0 0.016 15.0 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|435850786|ref|YP_007312372.1| - 0.0083 16.8 0.1 0.16 12.7 0.0 2.5 1 1 1 2 2 2 1 Methyltransferase domain DUF4265 PF14085.6 gi|435850786|ref|YP_007312372.1| - 0.012 15.6 0.1 0.22 11.5 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4265) NNMT_PNMT_TEMT PF01234.17 gi|435850786|ref|YP_007312372.1| - 0.078 12.2 0.0 3.7 6.7 0.0 2.2 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family FlaC_arch PF05377.11 gi|435850787|ref|YP_007312373.1| - 0.016 15.6 1.5 15 6.0 1.6 3.6 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) FliD_N PF02465.18 gi|435850787|ref|YP_007312373.1| - 0.1 13.3 0.2 0.25 12.1 0.2 1.6 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 N-terminus tRNA-synt_1 PF00133.22 gi|435850788|ref|YP_007312374.1| - 4e-65 220.2 1.2 2.5e-47 161.4 0.4 3.0 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|435850788|ref|YP_007312374.1| - 1.1e-28 100.1 0.8 1.5e-11 43.7 0.0 3.2 2 1 1 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|435850788|ref|YP_007312374.1| - 1.2e-21 77.2 0.1 2.5e-21 76.2 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|435850788|ref|YP_007312374.1| - 8.3e-11 41.8 0.0 1.7e-06 27.6 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|435850788|ref|YP_007312374.1| - 9.5e-08 31.8 0.0 2e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1d PF00750.19 gi|435850788|ref|YP_007312374.1| - 0.0078 15.2 0.0 0.016 14.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (R) CGI-121 PF08617.10 gi|435850789|ref|YP_007312375.1| - 6e-09 36.2 0.3 8.4e-09 35.8 0.3 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 FBPase_glpX PF03320.13 gi|435850790|ref|YP_007312376.1| - 5e-117 390.2 6.9 5.9e-117 389.9 6.9 1.0 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Oxidored_nitro PF00148.19 gi|435850790|ref|YP_007312376.1| - 0.028 13.2 0.5 0.043 12.6 0.5 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Radical_SAM PF04055.21 gi|435850791|ref|YP_007312377.1| - 1.5e-23 84.0 0.1 2.4e-22 80.1 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|435850791|ref|YP_007312377.1| - 8.2e-22 77.1 0.9 1.4e-21 76.3 0.3 1.7 2 0 0 2 2 2 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|435850791|ref|YP_007312377.1| - 0.0012 18.8 0.0 0.0027 17.7 0.0 1.6 1 0 0 1 1 1 1 TRAM domain Voltage_CLC PF00654.20 gi|435850792|ref|YP_007312378.1| - 1.5e-92 310.6 34.0 1.5e-92 310.6 34.0 1.7 1 1 1 2 2 2 2 Voltage gated chloride channel CBS PF00571.28 gi|435850792|ref|YP_007312378.1| - 8.9e-23 80.5 3.6 9.5e-12 45.2 0.2 2.9 3 0 0 3 3 3 2 CBS domain 7tm_7 PF08395.12 gi|435850792|ref|YP_007312378.1| - 0.016 14.4 1.3 0.016 14.4 1.3 2.2 3 0 0 3 3 3 0 7tm Chemosensory receptor F-box PF00646.33 gi|435850792|ref|YP_007312378.1| - 0.14 12.1 0.0 0.43 10.5 0.0 1.9 1 0 0 1 1 1 0 F-box domain ATP-grasp_5 PF13549.6 gi|435850794|ref|YP_007312380.1| - 1.8e-80 269.6 0.1 3.1e-80 268.8 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|435850794|ref|YP_007312380.1| - 1e-55 187.3 2.1 1.4e-55 186.9 0.2 2.3 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|435850794|ref|YP_007312380.1| - 1.6e-29 102.8 2.7 1.4e-27 96.5 0.4 3.6 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|435850794|ref|YP_007312380.1| - 2.9e-15 56.7 2.7 1.2e-14 54.7 1.4 2.7 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|435850794|ref|YP_007312380.1| - 0.021 15.7 0.6 0.6 11.0 0.2 2.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Ligase_CoA PF00549.19 gi|435850794|ref|YP_007312380.1| - 0.033 14.0 0.0 0.35 10.7 0.0 2.4 2 0 0 2 2 2 0 CoA-ligase DRTGG PF07085.12 gi|435850795|ref|YP_007312381.1| - 4.8e-33 113.1 0.9 8.9e-33 112.2 0.2 1.8 2 0 0 2 2 2 1 DRTGG domain AAA_26 PF13500.6 gi|435850795|ref|YP_007312381.1| - 9.9e-32 110.4 0.5 5.5e-31 107.9 0.0 2.3 2 1 1 3 3 3 1 AAA domain CbiA PF01656.23 gi|435850795|ref|YP_007312381.1| - 1.3e-05 25.2 0.0 0.00013 22.1 0.0 2.3 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Hpr_kinase_N PF02603.16 gi|435850795|ref|YP_007312381.1| - 0.0032 17.5 0.1 0.014 15.4 0.0 2.1 2 0 0 2 2 2 1 HPr Serine kinase N terminus FMN_red PF03358.15 gi|435850796|ref|YP_007312382.1| - 5.8e-36 123.6 0.0 7.3e-36 123.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|435850796|ref|YP_007312382.1| - 1.6e-13 50.8 0.0 2.1e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|435850796|ref|YP_007312382.1| - 0.0034 17.6 0.0 0.0043 17.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|435850796|ref|YP_007312382.1| - 0.027 14.7 0.0 0.038 14.2 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin ACT_5 PF13710.6 gi|435850796|ref|YP_007312382.1| - 0.032 14.1 0.0 1 9.2 0.0 2.4 2 0 0 2 2 2 0 ACT domain PGK PF00162.19 gi|435850797|ref|YP_007312383.1| - 5.7e-111 371.1 0.4 6.4e-111 370.9 0.4 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase AMMECR1 PF01871.17 gi|435850798|ref|YP_007312384.1| - 2.5e-51 173.6 0.0 2.8e-51 173.4 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Nuc_deoxyrib_tr PF05014.15 gi|435850799|ref|YP_007312385.1| - 2.7e-27 95.3 0.0 3.2e-27 95.1 0.0 1.0 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Nuc_deoxyri_tr2 PF15891.5 gi|435850799|ref|YP_007312385.1| - 2.9e-20 72.6 0.0 3.5e-20 72.3 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase like TIR_2 PF13676.6 gi|435850799|ref|YP_007312385.1| - 3.9e-05 24.2 0.0 6.9e-05 23.4 0.0 1.4 1 1 0 1 1 1 1 TIR domain LDcluster4 PF18306.1 gi|435850799|ref|YP_007312385.1| - 0.044 13.4 0.0 0.052 13.1 0.0 1.2 1 0 0 1 1 1 0 SLOG cluster4 family Big_8 PF17961.1 gi|435850800|ref|YP_007312386.1| - 0.033 14.3 0.2 0.42 10.8 0.0 2.1 1 1 1 2 2 2 0 Bacterial Ig domain DUF234 PF03008.14 gi|435850801|ref|YP_007312387.1| - 3.7e-26 91.5 0.4 9.7e-26 90.1 0.1 1.8 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|435850801|ref|YP_007312387.1| - 1.5e-23 84.0 0.0 8e-23 81.6 0.0 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|435850801|ref|YP_007312387.1| - 1.2e-09 38.2 0.1 4.7e-09 36.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|435850801|ref|YP_007312387.1| - 8.9e-07 29.3 0.0 2.1e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain Mrr_cat PF04471.12 gi|435850801|ref|YP_007312387.1| - 0.00047 20.2 0.0 0.0013 18.8 0.0 1.7 2 0 0 2 2 2 1 Restriction endonuclease HTH_45 PF14947.6 gi|435850801|ref|YP_007312387.1| - 0.001 19.0 0.0 0.0023 17.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix AAA_16 PF13191.6 gi|435850801|ref|YP_007312387.1| - 0.0025 18.2 0.1 0.023 15.1 0.1 2.3 1 1 0 1 1 1 1 AAA ATPase domain HTH_5 PF01022.20 gi|435850801|ref|YP_007312387.1| - 0.0061 16.4 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TniB PF05621.11 gi|435850801|ref|YP_007312387.1| - 0.071 12.5 0.0 0.23 10.8 0.0 1.9 1 1 0 1 1 1 0 Bacterial TniB protein AAA_24 PF13479.6 gi|435850801|ref|YP_007312387.1| - 0.15 11.8 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain HTH_3 PF01381.22 gi|435850802|ref|YP_007312388.1| - 0.00049 20.1 0.2 0.00071 19.6 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|435850802|ref|YP_007312388.1| - 0.00059 19.6 0.0 0.0011 18.7 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.6 gi|435850802|ref|YP_007312388.1| - 0.0086 15.6 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|435850802|ref|YP_007312388.1| - 0.0095 15.9 0.0 0.016 15.1 0.0 1.4 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_19 PF12844.7 gi|435850802|ref|YP_007312388.1| - 0.018 15.1 0.1 0.023 14.7 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|435850802|ref|YP_007312388.1| - 0.02 14.6 0.1 0.039 13.6 0.1 1.5 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_37 PF13744.6 gi|435850802|ref|YP_007312388.1| - 0.021 14.8 0.0 0.026 14.5 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|435850802|ref|YP_007312388.1| - 0.025 14.5 0.3 0.092 12.6 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family YdaS_antitoxin PF15943.5 gi|435850802|ref|YP_007312388.1| - 0.046 13.6 0.0 0.084 12.7 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT MarR_2 PF12802.7 gi|435850802|ref|YP_007312388.1| - 0.047 13.6 0.0 0.075 12.9 0.0 1.3 1 0 0 1 1 1 0 MarR family Cdd1 PF11731.8 gi|435850802|ref|YP_007312388.1| - 0.062 13.5 0.0 0.087 13.1 0.0 1.3 1 0 0 1 1 1 0 Pathogenicity locus HTH_38 PF13936.6 gi|435850802|ref|YP_007312388.1| - 0.079 12.7 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain ClpB_D2-small PF10431.9 gi|435850802|ref|YP_007312388.1| - 0.088 12.9 0.1 0.17 12.0 0.0 1.5 2 0 0 2 2 2 0 C-terminal, D2-small domain, of ClpB protein mTERF PF02536.14 gi|435850802|ref|YP_007312388.1| - 0.097 11.6 0.0 0.1 11.5 0.0 1.1 1 0 0 1 1 1 0 mTERF HTH_31 PF13560.6 gi|435850802|ref|YP_007312388.1| - 0.11 12.8 0.0 0.13 12.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain ThiS PF02597.20 gi|435850803|ref|YP_007312389.1| - 7.9e-08 32.8 0.1 8.5e-08 32.7 0.1 1.0 1 0 0 1 1 1 1 ThiS family ThiS-like PF14453.6 gi|435850803|ref|YP_007312389.1| - 0.044 13.8 0.2 0.051 13.6 0.2 1.1 1 0 0 1 1 1 0 ThiS-like ubiquitin FeS_assembly_P PF01883.19 gi|435850804|ref|YP_007312390.1| - 4.4e-17 62.0 0.8 7.5e-17 61.3 0.8 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Hexapep PF00132.24 gi|435850804|ref|YP_007312390.1| - 4.2e-13 48.4 8.3 3.1e-07 29.8 1.3 2.7 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|435850804|ref|YP_007312390.1| - 3.5e-09 36.3 9.4 1.8e-05 24.4 1.6 2.6 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.14 gi|435850804|ref|YP_007312390.1| - 0.00014 22.2 0.0 0.00031 21.1 0.0 1.5 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Ribosomal_S5_C PF03719.15 gi|435850804|ref|YP_007312390.1| - 0.097 12.1 0.2 12 5.5 0.5 2.5 2 0 0 2 2 2 0 Ribosomal protein S5, C-terminal domain PALP PF00291.25 gi|435850805|ref|YP_007312391.1| - 2.8e-71 240.4 0.5 3.1e-71 240.2 0.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|435850805|ref|YP_007312391.1| - 0.0094 15.9 0.2 0.088 12.8 0.2 2.3 1 1 0 1 1 1 1 Zinc-binding dehydrogenase DFP PF04127.15 gi|435850805|ref|YP_007312391.1| - 0.068 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein THUMP PF02926.17 gi|435850806|ref|YP_007312392.1| - 1.8e-05 24.9 0.0 2.1e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 THUMP domain Cys_Met_Meta_PP PF01053.20 gi|435850807|ref|YP_007312393.1| - 4.6e-146 486.2 0.0 5.3e-146 486.1 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|435850807|ref|YP_007312393.1| - 6.2e-12 45.5 0.2 1.2e-11 44.6 0.3 1.4 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|435850807|ref|YP_007312393.1| - 5.7e-07 28.8 0.0 1e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|435850807|ref|YP_007312393.1| - 3.3e-06 26.5 0.0 5.3e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|435850807|ref|YP_007312393.1| - 0.00033 20.0 0.0 0.00057 19.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase GDC-P PF02347.16 gi|435850807|ref|YP_007312393.1| - 0.015 14.2 0.0 0.023 13.5 0.0 1.2 1 0 0 1 1 1 0 Glycine cleavage system P-protein Lipase_GDSL PF00657.22 gi|435850807|ref|YP_007312393.1| - 0.14 12.1 0.0 0.35 10.8 0.0 1.6 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase Met_gamma_lyase PF06838.11 gi|435850807|ref|YP_007312393.1| - 0.14 10.6 0.2 12 4.3 0.0 2.1 2 0 0 2 2 2 0 Methionine gamma-lyase SepSecS PF05889.13 gi|435850808|ref|YP_007312394.1| - 1.7e-22 79.7 0.0 2.7e-22 79.0 0.0 1.2 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|435850808|ref|YP_007312394.1| - 8.2e-20 71.1 0.0 1.1e-19 70.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|435850808|ref|YP_007312394.1| - 0.00016 21.1 0.0 0.00024 20.5 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|435850808|ref|YP_007312394.1| - 0.0033 16.7 0.0 0.0051 16.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|435850808|ref|YP_007312394.1| - 0.0039 16.6 0.3 0.0081 15.5 0.3 1.5 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|435850808|ref|YP_007312394.1| - 0.0095 14.5 0.0 0.016 13.7 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme CBS PF00571.28 gi|435850809|ref|YP_007312395.1| - 0.0018 18.7 0.2 0.0046 17.4 0.1 1.7 2 0 0 2 2 2 1 CBS domain PMBR PF09373.10 gi|435850809|ref|YP_007312395.1| - 0.25 11.6 1.8 0.93 9.8 0.1 2.5 2 0 0 2 2 2 0 Pseudomurein-binding repeat HTH_24 PF13412.6 gi|435850810|ref|YP_007312396.1| - 1.2e-07 31.2 0.1 1.5e-07 30.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|435850810|ref|YP_007312396.1| - 0.0025 17.6 0.0 0.0028 17.5 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.7 gi|435850810|ref|YP_007312396.1| - 0.022 14.7 0.0 0.027 14.4 0.0 1.1 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|435850810|ref|YP_007312396.1| - 0.086 13.3 0.0 0.1 13.1 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 gi|435850810|ref|YP_007312396.1| - 0.14 12.1 0.0 0.29 11.0 0.0 1.5 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF4065 PF13274.6 gi|435850811|ref|YP_007312397.1| - 0.009 16.9 0.1 0.02 15.8 0.0 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF4065) B12-binding_2 PF02607.17 gi|435850812|ref|YP_007312398.1| - 5e-15 55.7 0.7 6.2e-15 55.4 0.7 1.1 1 0 0 1 1 1 1 B12 binding domain TraC PF07820.12 gi|435850812|ref|YP_007312398.1| - 0.02 15.2 0.3 0.029 14.7 0.3 1.3 1 0 0 1 1 1 0 TraC-like protein Prenyltrans PF00432.21 gi|435850812|ref|YP_007312398.1| - 0.082 12.7 0.1 0.15 11.9 0.1 1.5 1 1 0 1 1 1 0 Prenyltransferase and squalene oxidase repeat FdhD-NarQ PF02634.15 gi|435850813|ref|YP_007312399.1| - 4.7e-66 222.9 0.2 5.5e-66 222.6 0.2 1.0 1 0 0 1 1 1 1 FdhD/NarQ family DDE_Tnp_1 PF01609.21 gi|435850814|ref|YP_007312400.1| - 1.2e-26 93.7 0.2 1.7e-26 93.2 0.2 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|435850814|ref|YP_007312400.1| - 3.3e-25 88.1 2.3 3.7e-25 87.9 0.7 2.0 2 0 0 2 2 2 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1_2 PF13586.6 gi|435850814|ref|YP_007312400.1| - 8.6e-14 51.7 0.6 2.5e-13 50.2 0.2 2.0 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|435850814|ref|YP_007312400.1| - 2.9e-09 36.8 0.1 4e-09 36.4 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_4 PF13701.6 gi|435850814|ref|YP_007312400.1| - 0.013 13.8 0.1 0.05 11.9 0.1 1.7 1 1 1 2 2 2 0 Transposase DDE domain group 1 DDE_Tnp_1_7 PF13843.6 gi|435850814|ref|YP_007312400.1| - 0.025 13.9 0.0 0.035 13.4 0.0 1.2 1 0 0 1 1 1 0 Transposase IS4 NadA PF02445.16 gi|435850815|ref|YP_007312401.1| - 2.8e-118 394.5 7.7 3.1e-118 394.3 7.7 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Asparaginase PF00710.20 gi|435850815|ref|YP_007312401.1| - 0.094 12.3 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 Asparaginase, N-terminal HTH_5 PF01022.20 gi|435850816|ref|YP_007312402.1| - 4.4e-17 61.7 0.3 1.3e-16 60.2 0.3 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|435850816|ref|YP_007312402.1| - 1.8e-10 40.7 0.0 3.7e-10 39.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|435850816|ref|YP_007312402.1| - 0.0064 16.6 0.1 0.0094 16.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain E1-E2_ATPase PF00122.20 gi|435850817|ref|YP_007312403.1| - 1.3e-51 174.7 1.0 3.6e-51 173.2 1.0 1.8 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|435850817|ref|YP_007312403.1| - 4.9e-43 147.9 2.2 9e-43 147.0 2.2 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|435850817|ref|YP_007312403.1| - 7.9e-25 87.1 0.0 6.2e-11 42.6 0.0 2.9 2 0 0 2 2 2 2 Heavy-metal-associated domain zf-LYAR PF08790.11 gi|435850817|ref|YP_007312403.1| - 0.012 15.5 1.6 4.4 7.3 0.1 2.3 2 0 0 2 2 2 0 LYAR-type C2HC zinc finger Hydrolase_3 PF08282.12 gi|435850817|ref|YP_007312403.1| - 0.013 15.2 5.7 0.019 14.7 0.4 3.1 4 0 0 4 4 4 0 haloacid dehalogenase-like hydrolase zf-dskA_traR PF01258.17 gi|435850817|ref|YP_007312403.1| - 0.023 14.6 0.6 6.7 6.7 0.0 2.6 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger NapD PF03927.13 gi|435850817|ref|YP_007312403.1| - 0.032 14.3 0.0 11 6.1 0.0 2.8 2 0 0 2 2 2 0 NapD protein Peptidase_C71 PF12386.8 gi|435850817|ref|YP_007312403.1| - 0.19 11.4 0.1 22 4.7 0.0 2.4 2 0 0 2 2 2 0 Pseudomurein endo-isopeptidase Pei HTH_AsnC-type PF13404.6 gi|435850820|ref|YP_007312406.1| - 0.12 12.2 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|435850820|ref|YP_007312406.1| - 0.16 11.6 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding WYL_2 PF10902.8 gi|435850821|ref|YP_007312407.1| - 0.1 12.9 0.5 0.25 11.7 0.1 1.8 2 0 0 2 2 2 0 WYL_2, Sm-like SH3 beta-barrel fold AAA PF00004.29 gi|435850822|ref|YP_007312408.1| - 4.5e-44 150.1 0.3 2.5e-43 147.7 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|435850822|ref|YP_007312408.1| - 3e-12 46.1 0.1 9.5e-12 44.5 0.1 1.9 2 0 0 2 2 2 1 AAA+ lid domain AAA_16 PF13191.6 gi|435850822|ref|YP_007312408.1| - 9.5e-06 26.1 0.2 0.00065 20.1 0.1 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|435850822|ref|YP_007312408.1| - 2.2e-05 24.5 0.1 9.4e-05 22.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|435850822|ref|YP_007312408.1| - 7.3e-05 22.6 1.6 0.00024 20.9 0.0 2.5 4 0 0 4 4 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|435850822|ref|YP_007312408.1| - 0.00012 22.3 0.1 0.0012 19.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|435850822|ref|YP_007312408.1| - 0.00032 21.0 0.1 0.043 14.1 0.1 2.5 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|435850822|ref|YP_007312408.1| - 0.0043 16.4 1.0 0.021 14.2 0.0 2.4 3 0 0 3 3 3 1 KaiC DUF815 PF05673.13 gi|435850822|ref|YP_007312408.1| - 0.0047 16.1 0.0 0.0087 15.2 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.6 gi|435850822|ref|YP_007312408.1| - 0.0096 16.0 0.1 0.026 14.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.11 gi|435850822|ref|YP_007312408.1| - 0.011 15.6 0.0 0.025 14.4 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 gi|435850822|ref|YP_007312408.1| - 0.012 16.1 0.2 0.7 10.3 0.0 2.6 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.13 gi|435850822|ref|YP_007312408.1| - 0.017 14.4 0.1 0.048 12.9 0.1 1.7 1 0 0 1 1 1 0 TIP49 P-loop domain RNA_helicase PF00910.22 gi|435850822|ref|YP_007312408.1| - 0.02 15.2 0.0 0.044 14.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|435850822|ref|YP_007312408.1| - 0.021 15.3 0.4 0.079 13.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|435850822|ref|YP_007312408.1| - 0.022 14.5 0.0 0.053 13.2 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|435850822|ref|YP_007312408.1| - 0.023 14.4 0.1 0.19 11.4 0.0 2.4 3 0 0 3 3 3 0 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 gi|435850822|ref|YP_007312408.1| - 0.032 14.3 0.1 0.51 10.4 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|435850822|ref|YP_007312408.1| - 0.032 13.6 0.1 0.081 12.3 0.1 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF3450 PF11932.8 gi|435850822|ref|YP_007312408.1| - 0.051 12.9 1.0 0.074 12.3 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Parvo_NS1 PF01057.17 gi|435850822|ref|YP_007312408.1| - 0.057 12.5 0.1 0.13 11.4 0.1 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_33 PF13671.6 gi|435850822|ref|YP_007312408.1| - 0.071 13.3 0.0 0.12 12.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|435850822|ref|YP_007312408.1| - 0.073 12.6 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|435850822|ref|YP_007312408.1| - 0.079 12.7 0.2 0.21 11.3 0.2 1.8 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|435850822|ref|YP_007312408.1| - 0.1 11.9 0.0 0.2 10.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.6 gi|435850822|ref|YP_007312408.1| - 0.12 12.6 0.0 0.26 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain Penicillinase_R PF03965.16 gi|435850823|ref|YP_007312409.1| - 0.012 15.9 0.0 0.022 15.1 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor TFIIA PF03153.13 gi|435850823|ref|YP_007312409.1| - 1.8 8.5 6.7 2 8.3 6.7 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit DUF131 PF01998.17 gi|435850824|ref|YP_007312410.1| - 2e-10 40.2 5.2 2e-10 40.2 5.2 1.6 1 1 1 2 2 2 1 Protein of unknown function DUF131 Claudin_3 PF06653.11 gi|435850824|ref|YP_007312410.1| - 0.0084 16.1 1.0 0.0093 15.9 1.0 1.0 1 0 0 1 1 1 1 Tight junction protein, Claudin-like TMEM252 PF15664.5 gi|435850824|ref|YP_007312410.1| - 0.015 15.0 0.7 0.055 13.2 0.0 1.9 2 0 0 2 2 2 0 Transmembrane protein 252 family DUF4282 PF14110.6 gi|435850824|ref|YP_007312410.1| - 0.19 12.5 5.0 0.72 10.6 5.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4282) DUF131 PF01998.17 gi|435850825|ref|YP_007312411.1| - 3.2e-15 55.5 4.9 3.2e-15 55.5 4.9 2.2 1 1 0 2 2 2 1 Protein of unknown function DUF131 DUF2583 PF10762.9 gi|435850825|ref|YP_007312411.1| - 0.0037 17.7 0.6 0.006 17.0 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2583) DUF3098 PF11297.8 gi|435850825|ref|YP_007312411.1| - 2.8 7.6 7.8 0.39 10.3 1.4 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3098) UvrB_inter PF17757.1 gi|435850826|ref|YP_007312412.1| - 5.4e-30 103.4 0.4 2.2e-29 101.5 0.1 2.2 2 0 0 2 2 2 1 UvrB interaction domain UvrB PF12344.8 gi|435850826|ref|YP_007312412.1| - 3.7e-21 74.7 0.3 7.5e-21 73.7 0.3 1.5 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|435850826|ref|YP_007312412.1| - 1.5e-18 67.2 0.7 3e-18 66.2 0.1 1.9 2 0 0 2 2 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|435850826|ref|YP_007312412.1| - 5.1e-12 46.1 0.0 4.4e-11 43.1 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.19 gi|435850826|ref|YP_007312412.1| - 4.3e-11 42.2 4.9 1.6e-10 40.4 4.9 2.1 1 0 0 1 1 1 1 UvrB/uvrC motif DEAD PF00270.29 gi|435850826|ref|YP_007312412.1| - 0.00015 21.6 0.0 0.0066 16.2 0.0 3.0 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|435850826|ref|YP_007312412.1| - 0.00042 20.1 0.0 0.023 14.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|435850826|ref|YP_007312412.1| - 0.0038 17.6 0.0 2.7 8.3 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|435850826|ref|YP_007312412.1| - 0.038 14.3 0.1 0.3 11.4 0.0 2.6 2 1 0 2 2 2 0 AAA domain SWI2_SNF2 PF18766.1 gi|435850826|ref|YP_007312412.1| - 0.058 13.1 0.1 0.97 9.1 0.0 2.4 2 0 0 2 2 2 0 SWI2/SNF2 ATPase AAA_7 PF12775.7 gi|435850826|ref|YP_007312412.1| - 0.063 12.8 0.1 0.12 11.9 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|435850826|ref|YP_007312412.1| - 0.08 13.5 0.1 3.7 8.1 0.0 2.6 2 0 0 2 2 2 0 ABC transporter Microtub_bd PF16796.5 gi|435850826|ref|YP_007312412.1| - 0.091 12.7 0.2 0.6 10.0 0.0 2.2 2 0 0 2 2 2 0 Microtubule binding Rhomboid_N PF12122.8 gi|435850826|ref|YP_007312412.1| - 0.14 12.4 0.2 2.4 8.4 0.0 2.4 2 0 0 2 2 2 0 Cytoplasmic N-terminal domain of rhomboid serine protease Flavi_DEAD PF07652.14 gi|435850826|ref|YP_007312412.1| - 0.14 12.1 0.0 1.5 8.8 0.0 2.7 3 0 0 3 3 3 0 Flavivirus DEAD domain Unpaired PF15972.5 gi|435850826|ref|YP_007312412.1| - 0.21 11.1 1.1 3.5 7.1 0.5 2.2 2 0 0 2 2 2 0 Unpaired protein DUF87 PF01935.17 gi|435850826|ref|YP_007312412.1| - 0.63 10.1 3.6 0.37 10.8 0.1 2.2 2 0 0 2 2 2 0 Helicase HerA, central domain SOUL PF04832.12 gi|435850827|ref|YP_007312413.1| - 3e-41 141.4 0.0 3.3e-41 141.3 0.0 1.0 1 0 0 1 1 1 1 SOUL heme-binding protein FAD_binding_7 PF03441.14 gi|435850828|ref|YP_007312414.1| - 3.4e-78 261.8 0.7 4.8e-78 261.3 0.7 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|435850828|ref|YP_007312414.1| - 6.8e-43 146.5 0.0 1.1e-42 145.8 0.0 1.3 1 0 0 1 1 1 1 DNA photolyase MatE PF01554.18 gi|435850829|ref|YP_007312415.1| - 2.9e-39 134.3 37.2 1.5e-23 83.2 16.0 2.7 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|435850829|ref|YP_007312415.1| - 8.6e-06 25.9 58.8 0.0002 21.5 23.2 4.6 2 2 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Fer4 PF00037.27 gi|435850830|ref|YP_007312416.1| - 8.8e-12 44.3 13.2 6.2e-06 25.8 0.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|435850830|ref|YP_007312416.1| - 2.2e-09 36.8 13.9 1.6e-05 24.7 2.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435850830|ref|YP_007312416.1| - 4e-09 36.5 11.6 4e-09 36.5 11.6 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435850830|ref|YP_007312416.1| - 1.3e-08 34.5 15.4 0.0003 20.7 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|435850830|ref|YP_007312416.1| - 7.3e-08 33.2 11.4 0.00097 20.0 3.7 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|435850830|ref|YP_007312416.1| - 2.2e-07 30.9 13.0 2.2e-07 30.9 13.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435850830|ref|YP_007312416.1| - 2.9e-07 31.0 17.3 0.001 19.6 1.0 2.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435850830|ref|YP_007312416.1| - 1.4e-05 25.2 11.6 0.028 14.9 1.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|435850830|ref|YP_007312416.1| - 2e-05 24.6 12.8 2e-05 24.6 12.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|435850830|ref|YP_007312416.1| - 0.00014 22.2 17.1 0.017 15.5 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435850830|ref|YP_007312416.1| - 0.0036 17.8 19.6 0.005 17.4 0.7 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|435850830|ref|YP_007312416.1| - 0.0091 16.5 12.6 0.033 14.7 0.4 3.0 2 1 1 3 3 3 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|435850830|ref|YP_007312416.1| - 0.054 13.7 11.9 0.8 9.9 2.1 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|435850830|ref|YP_007312416.1| - 7.3 7.4 14.4 4.2 8.2 0.9 2.9 1 1 2 3 3 3 0 4Fe-4S single cluster domain CdhD PF03599.16 gi|435850831|ref|YP_007312417.1| - 1.4e-09 37.2 0.0 1.8e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit MazE_antitoxin PF04014.18 gi|435850832|ref|YP_007312418.1| - 1.1e-05 25.2 0.0 1.9e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin N6_Mtase PF02384.16 gi|435850833|ref|YP_007312419.1| - 1.2e-51 175.9 0.0 1.7e-51 175.4 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|435850833|ref|YP_007312419.1| - 1.9e-22 80.3 0.4 6.8e-22 78.6 0.3 2.1 2 0 0 2 2 2 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|435850833|ref|YP_007312419.1| - 0.038 13.7 0.0 0.14 11.8 0.0 1.9 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 DUF1016_N PF17761.1 gi|435850834|ref|YP_007312420.1| - 9.3e-11 42.0 0.0 1.2e-10 41.7 0.0 1.2 1 0 0 1 1 1 1 DUF1016 N-terminal domain Herpes_IE68 PF02479.16 gi|435850834|ref|YP_007312420.1| - 0.14 11.8 0.1 0.19 11.3 0.1 1.2 1 0 0 1 1 1 0 Herpesvirus immediate early protein Hypoth_Ymh PF09509.10 gi|435850835|ref|YP_007312421.1| - 2.6e-41 140.3 0.0 3.7e-41 139.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (Hypoth_ymh) DUF2729 PF10870.8 gi|435850835|ref|YP_007312421.1| - 0.11 12.4 2.1 0.67 9.9 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2729) Methylase_S PF01420.19 gi|435850836|ref|YP_007312422.1| - 6.4e-10 39.5 0.0 0.00095 19.4 0.0 2.3 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain TnpB_IS66 PF05717.13 gi|435850837|ref|YP_007312423.1| - 0.0068 16.3 0.1 0.038 13.9 0.0 2.1 2 0 0 2 2 2 1 IS66 Orf2 like protein SWI2_SNF2 PF18766.1 gi|435850839|ref|YP_007312425.1| - 3.5e-30 105.3 0.5 8.4e-30 104.1 0.5 1.6 1 1 0 1 1 1 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|435850839|ref|YP_007312425.1| - 1.2e-17 64.6 0.2 5.6e-17 62.3 0.0 2.3 3 0 0 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.15 gi|435850839|ref|YP_007312425.1| - 4.3e-16 59.4 0.2 1.1e-15 58.1 0.2 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DnaG_DnaB_bind PF08278.11 gi|435850839|ref|YP_007312425.1| - 0.035 14.7 0.0 0.13 12.8 0.0 2.0 1 0 0 1 1 1 0 DNA primase DnaG DnaB-binding Flu_M1_C PF08289.11 gi|435850840|ref|YP_007312426.1| - 0.044 14.0 0.6 0.069 13.4 0.5 1.4 1 1 0 1 1 1 0 Influenza Matrix protein (M1) C-terminal domain Coat_F PF07875.12 gi|435850841|ref|YP_007312427.1| - 0.00036 20.7 2.6 0.002 18.3 0.7 2.3 2 0 0 2 2 2 1 Coat F domain Rubrerythrin PF02915.17 gi|435850841|ref|YP_007312427.1| - 0.00061 20.2 1.7 0.0011 19.3 1.7 1.4 1 0 0 1 1 1 1 Rubrerythrin vATP-synt_E PF01991.18 gi|435850841|ref|YP_007312427.1| - 0.0055 16.1 2.5 0.007 15.8 2.5 1.1 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DUF2383 PF09537.10 gi|435850841|ref|YP_007312427.1| - 0.0087 16.4 0.3 0.013 15.8 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) DUF3450 PF11932.8 gi|435850841|ref|YP_007312427.1| - 0.013 14.8 2.1 0.014 14.7 1.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) Swi5 PF07061.11 gi|435850841|ref|YP_007312427.1| - 0.025 14.6 1.7 0.048 13.8 1.7 1.5 1 0 0 1 1 1 0 Swi5 CENP-H PF05837.12 gi|435850841|ref|YP_007312427.1| - 0.18 12.2 4.1 0.11 12.9 2.6 1.4 2 0 0 2 2 2 0 Centromere protein H (CENP-H) MetOD2 PF18548.1 gi|435850841|ref|YP_007312427.1| - 0.19 11.8 2.9 0.21 11.7 0.6 2.0 1 1 0 2 2 2 0 Metanogen output domain 2 HEAT_2 PF13646.6 gi|435850842|ref|YP_007312428.1| - 3.3e-22 78.7 0.0 8.3e-22 77.4 0.0 1.6 1 1 0 1 1 1 1 HEAT repeats HEAT_PBS PF03130.16 gi|435850842|ref|YP_007312428.1| - 1.1e-15 56.7 0.1 7.3e-06 26.2 0.0 3.3 4 0 0 4 4 4 2 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|435850842|ref|YP_007312428.1| - 9e-12 44.2 0.0 0.00025 21.0 0.0 3.1 3 0 0 3 3 3 3 HEAT repeat HEAT_EZ PF13513.6 gi|435850842|ref|YP_007312428.1| - 2.6e-11 43.7 0.0 0.0056 17.2 0.0 3.0 3 0 0 3 3 3 3 HEAT-like repeat Arm PF00514.23 gi|435850842|ref|YP_007312428.1| - 1.1e-09 38.0 0.0 2.8e-05 24.0 0.0 3.0 1 1 2 3 3 3 2 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|435850842|ref|YP_007312428.1| - 1.7e-06 28.2 0.1 9.7e-05 22.5 0.0 2.5 1 1 1 2 2 2 1 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|435850842|ref|YP_007312428.1| - 0.012 14.2 0.0 1.4 7.4 0.0 2.2 1 1 0 2 2 2 0 Adaptin N terminal region RasGEF_N_2 PF14663.6 gi|435850842|ref|YP_007312428.1| - 0.019 15.3 0.0 1 9.8 0.0 2.3 2 1 1 3 3 3 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain PhoQ_Sensor PF08918.10 gi|435850843|ref|YP_007312429.1| - 2e-05 24.5 0.2 6.2e-05 22.9 0.2 1.8 1 0 0 1 1 1 1 PhoQ Sensor APC_N_CC PF16689.5 gi|435850843|ref|YP_007312429.1| - 0.66 10.1 0.0 0.66 10.1 0.0 2.7 2 1 0 2 2 2 0 Coiled-coil N-terminus of APC, dimerisation domain SIMPL PF04402.14 gi|435850844|ref|YP_007312430.1| - 2.9e-46 158.5 12.2 3.4e-46 158.2 12.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) TssD PF17642.1 gi|435850844|ref|YP_007312430.1| - 0.02 14.7 0.1 0.038 13.8 0.1 1.4 1 0 0 1 1 1 0 Hemolysin coregulated protein Hcp (TssD) Peptidase_M50 PF02163.22 gi|435850844|ref|YP_007312430.1| - 0.031 13.6 0.5 0.053 12.8 0.3 1.5 1 1 0 1 1 1 0 Peptidase family M50 TPPK_C PF12555.8 gi|435850844|ref|YP_007312430.1| - 0.06 13.4 2.6 0.08 13.0 1.1 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal T2SSM PF04612.12 gi|435850844|ref|YP_007312430.1| - 0.15 12.1 1.2 0.37 10.8 0.1 2.0 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M HD PF01966.22 gi|435850845|ref|YP_007312431.1| - 2.3e-07 31.1 0.7 4.2e-07 30.2 0.4 1.6 2 0 0 2 2 2 1 HD domain DUF2691 PF10903.8 gi|435850845|ref|YP_007312431.1| - 0.051 13.5 1.5 0.13 12.2 0.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2691) SSF PF00474.17 gi|435850846|ref|YP_007312432.1| - 7.1e-47 160.2 33.5 1e-46 159.6 33.5 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF3267 PF11667.8 gi|435850847|ref|YP_007312433.1| - 3.6e-22 78.7 7.9 3.6e-22 78.7 7.9 2.1 2 0 0 2 2 2 1 Putative zincin peptidase DUF998 PF06197.13 gi|435850848|ref|YP_007312434.1| - 9.2e-24 84.1 16.0 1.1e-23 83.8 16.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) VIT1 PF01988.19 gi|435850848|ref|YP_007312434.1| - 0.19 11.6 5.0 0.34 10.8 5.0 1.5 1 0 0 1 1 1 0 VIT family LysE PF01810.18 gi|435850849|ref|YP_007312435.1| - 1.1e-25 90.2 18.1 1.3e-25 90.0 18.1 1.1 1 0 0 1 1 1 1 LysE type translocator DUF4131 PF13567.6 gi|435850849|ref|YP_007312435.1| - 9.9 5.8 8.8 6.4 6.4 3.6 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Peptidase_S8 PF00082.22 gi|435850850|ref|YP_007312436.1| - 2.2e-47 161.8 7.3 2.2e-47 161.8 7.3 1.8 2 0 0 2 2 2 1 Subtilase family Big_2 PF02368.18 gi|435850850|ref|YP_007312436.1| - 4.2e-08 33.0 0.4 2.1e-07 30.7 0.4 2.3 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 2) Ribophorin_I PF04597.14 gi|435850850|ref|YP_007312436.1| - 0.014 14.6 0.7 0.02 14.1 0.0 1.6 2 0 0 2 2 2 0 Ribophorin I BRCT_2 PF16589.5 gi|435850850|ref|YP_007312436.1| - 0.063 13.7 0.8 4.2 7.9 0.1 3.1 3 0 0 3 3 3 0 BRCT domain, a BRCA1 C-terminus domain PALP PF00291.25 gi|435850851|ref|YP_007312437.1| - 2.6e-24 86.2 0.0 4.2e-24 85.5 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 gi|435850851|ref|YP_007312437.1| - 4.4e-19 68.5 0.1 2.1e-18 66.3 0.0 2.2 2 0 0 2 2 2 1 Threonine synthase N terminus DUF21 PF01595.20 gi|435850852|ref|YP_007312438.1| - 1.7e-44 151.6 11.0 2.5e-44 151.1 11.0 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|435850852|ref|YP_007312438.1| - 3.4e-23 81.5 1.6 6.4e-23 80.6 0.4 2.2 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|435850852|ref|YP_007312438.1| - 2.6e-14 53.4 7.9 2.3e-08 34.4 0.1 3.9 4 0 0 4 4 4 2 CBS domain MFS_1 PF07690.16 gi|435850853|ref|YP_007312439.1| - 4.7e-67 226.4 70.2 3.1e-50 171.1 36.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily FUN14 PF04930.15 gi|435850853|ref|YP_007312439.1| - 2.2 8.7 6.5 15 6.1 0.3 3.4 3 0 0 3 3 3 0 FUN14 family Mem_trans PF03547.18 gi|435850853|ref|YP_007312439.1| - 3.6 5.9 16.1 0.024 13.0 1.5 3.1 2 1 1 3 3 3 0 Membrane transport protein cobW PF02492.19 gi|435850854|ref|YP_007312440.1| - 2.9e-22 79.1 0.3 3.3e-22 78.9 0.3 1.0 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|435850854|ref|YP_007312440.1| - 0.0029 16.6 0.2 1.6 7.6 0.0 2.2 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_31 PF13614.6 gi|435850854|ref|YP_007312440.1| - 0.016 15.2 0.5 0.022 14.7 0.5 1.6 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|435850854|ref|YP_007312440.1| - 0.038 13.8 2.0 0.72 9.6 2.0 2.2 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|435850854|ref|YP_007312440.1| - 0.054 14.0 0.4 0.12 12.9 0.1 1.9 2 1 0 2 2 2 0 AAA domain CbiA PF01656.23 gi|435850854|ref|YP_007312440.1| - 0.076 13.1 0.1 0.1 12.7 0.1 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.17 gi|435850854|ref|YP_007312440.1| - 0.079 12.6 0.4 0.98 9.1 0.1 2.1 1 1 1 2 2 2 0 Thymidylate kinase CutA1 PF03091.15 gi|435850855|ref|YP_007312441.1| - 1.8e-30 104.7 1.5 2.1e-30 104.5 1.5 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein DUF4995 PF16386.5 gi|435850855|ref|YP_007312441.1| - 0.088 12.8 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DEP PF00610.21 gi|435850855|ref|YP_007312441.1| - 0.16 12.0 0.0 1 9.5 0.0 2.1 2 0 0 2 2 2 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) TP6A_N PF04406.14 gi|435850856|ref|YP_007312442.1| - 1.5e-14 53.7 0.1 2.9e-14 52.8 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.11 gi|435850857|ref|YP_007312443.1| - 1.2e-68 229.9 0.0 2.1e-68 229.2 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|435850857|ref|YP_007312443.1| - 4.3e-42 142.9 0.1 1.1e-41 141.6 0.1 1.7 1 0 0 1 1 1 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|435850857|ref|YP_007312443.1| - 3.1e-11 43.8 0.0 6.1e-11 42.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|435850857|ref|YP_007312443.1| - 1.8e-08 34.3 0.0 3.9e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|435850857|ref|YP_007312443.1| - 0.0049 15.7 0.0 0.011 14.6 0.0 1.6 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) HATPase_c_5 PF14501.6 gi|435850857|ref|YP_007312443.1| - 0.0084 16.0 0.1 0.044 13.7 0.0 2.2 2 0 0 2 2 2 1 GHKL domain MAF_flag10 PF01973.18 gi|435850857|ref|YP_007312443.1| - 0.035 13.8 0.0 0.083 12.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF115 DUF1769 PF08588.10 gi|435850857|ref|YP_007312443.1| - 0.13 12.5 0.0 0.35 11.1 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1769) AsnC_trans_reg PF01037.21 gi|435850858|ref|YP_007312444.1| - 1.3e-10 41.1 0.1 1.5e-10 40.9 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|435850858|ref|YP_007312444.1| - 0.00035 20.5 0.0 0.0004 20.3 0.0 1.2 1 0 0 1 1 1 1 GYD domain MIase PF02426.16 gi|435850858|ref|YP_007312444.1| - 0.022 14.9 0.0 0.025 14.7 0.0 1.1 1 0 0 1 1 1 0 Muconolactone delta-isomerase NapD PF03927.13 gi|435850858|ref|YP_007312444.1| - 0.024 14.7 0.1 0.027 14.5 0.1 1.1 1 0 0 1 1 1 0 NapD protein Chlor_dismutase PF06778.12 gi|435850858|ref|YP_007312444.1| - 0.099 12.2 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Chlorite dismutase AAA PF00004.29 gi|435850859|ref|YP_007312445.1| - 4.8e-12 46.4 0.2 2.2e-11 44.3 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|435850859|ref|YP_007312445.1| - 5.4e-07 30.2 0.0 1.9e-06 28.4 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|435850859|ref|YP_007312445.1| - 8e-06 25.9 0.0 1.6e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|435850859|ref|YP_007312445.1| - 2e-05 24.9 0.8 0.046 14.0 0.1 3.6 3 1 1 4 4 4 2 AAA domain RuvB_N PF05496.12 gi|435850859|ref|YP_007312445.1| - 2e-05 24.4 0.0 7.5e-05 22.5 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|435850859|ref|YP_007312445.1| - 0.00038 20.5 0.0 0.00097 19.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|435850859|ref|YP_007312445.1| - 0.00052 19.8 0.3 0.0011 18.7 0.3 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|435850859|ref|YP_007312445.1| - 0.00062 19.8 0.0 0.0027 17.8 0.0 2.1 2 0 0 2 2 1 1 AAA domain AAA_7 PF12775.7 gi|435850859|ref|YP_007312445.1| - 0.00068 19.2 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region DUF815 PF05673.13 gi|435850859|ref|YP_007312445.1| - 0.0013 18.0 0.0 0.0036 16.5 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_6 PF12774.7 gi|435850859|ref|YP_007312445.1| - 0.0013 17.8 0.0 0.003 16.6 0.0 1.5 1 0 0 1 1 1 1 Hydrolytic ATP binding site of dynein motor region RNA_helicase PF00910.22 gi|435850859|ref|YP_007312445.1| - 0.0026 18.1 0.0 0.049 14.0 0.0 2.6 2 0 0 2 2 2 1 RNA helicase NACHT PF05729.12 gi|435850859|ref|YP_007312445.1| - 0.0026 17.7 0.0 0.15 11.9 0.0 2.7 3 0 0 3 3 2 1 NACHT domain IstB_IS21 PF01695.17 gi|435850859|ref|YP_007312445.1| - 0.0055 16.5 0.0 0.015 15.1 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_2 PF07724.14 gi|435850859|ref|YP_007312445.1| - 0.0055 16.8 0.0 0.033 14.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) DNA_pol3_delta2 PF13177.6 gi|435850859|ref|YP_007312445.1| - 0.0063 16.3 1.8 2.8 7.7 0.0 3.6 3 1 1 4 4 3 1 DNA polymerase III, delta subunit AAA_assoc_2 PF16193.5 gi|435850859|ref|YP_007312445.1| - 0.0066 16.8 0.7 0.018 15.4 0.1 2.1 2 0 0 2 2 1 1 AAA C-terminal domain IPT PF01745.16 gi|435850859|ref|YP_007312445.1| - 0.0091 15.4 0.0 0.032 13.6 0.0 1.8 2 0 0 2 2 2 1 Isopentenyl transferase AAA_33 PF13671.6 gi|435850859|ref|YP_007312445.1| - 0.017 15.3 0.0 0.044 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|435850859|ref|YP_007312445.1| - 0.033 14.1 0.1 0.083 12.8 0.0 1.7 2 0 0 2 2 1 0 RsgA GTPase AAA_11 PF13086.6 gi|435850859|ref|YP_007312445.1| - 0.036 13.9 0.7 0.95 9.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|435850859|ref|YP_007312445.1| - 0.037 13.8 0.1 3 7.6 0.0 2.7 1 1 1 2 2 2 0 DEAD/DEAH box helicase Zeta_toxin PF06414.12 gi|435850859|ref|YP_007312445.1| - 0.041 13.1 0.0 0.087 12.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.6 gi|435850859|ref|YP_007312445.1| - 0.048 14.2 0.1 0.24 12.0 0.0 2.3 3 0 0 3 3 2 0 AAA domain TsaE PF02367.17 gi|435850859|ref|YP_007312445.1| - 0.067 13.2 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activat PF00158.26 gi|435850859|ref|YP_007312445.1| - 0.1 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_28 PF13521.6 gi|435850859|ref|YP_007312445.1| - 0.13 12.5 0.0 0.32 11.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|435850859|ref|YP_007312445.1| - 0.14 11.9 2.4 13 5.6 0.0 2.9 3 0 0 3 3 3 0 Bacterial dnaA protein AAA_25 PF13481.6 gi|435850859|ref|YP_007312445.1| - 0.16 11.6 2.3 0.27 10.8 0.1 2.4 2 1 1 3 3 3 0 AAA domain YebO PF13974.6 gi|435850859|ref|YP_007312445.1| - 1.5 9.0 3.5 2.8 8.1 2.3 2.0 2 0 0 2 2 2 0 YebO-like protein PTA_PTB PF01515.19 gi|435850860|ref|YP_007312446.1| - 0.00053 19.4 0.1 0.78 9.0 0.3 2.2 1 1 1 2 2 2 2 Phosphate acetyl/butaryl transferase Thymidylat_synt PF00303.19 gi|435850861|ref|YP_007312447.1| - 1.5e-07 30.8 0.1 3.3e-07 29.7 0.1 1.6 1 1 0 1 1 1 1 Thymidylate synthase Zn_Tnp_IS1595 PF12760.7 gi|435850861|ref|YP_007312447.1| - 0.0011 18.9 0.4 0.0021 18.0 0.4 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-CCHC_5 PF14787.6 gi|435850861|ref|YP_007312447.1| - 1.8 8.3 4.3 3.5 7.4 0.1 2.4 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger Glyco_hydro_71 PF03659.14 gi|435850863|ref|YP_007312449.1| - 0.094 11.5 0.0 0.098 11.5 0.0 1.0 1 0 0 1 1 1 0 Glycosyl hydrolase family 71 ILVD_EDD PF00920.21 gi|435850864|ref|YP_007312450.1| - 3.5e-224 745.2 5.7 3.9e-224 745.0 5.7 1.0 1 0 0 1 1 1 1 Dehydratase family Radical_SAM PF04055.21 gi|435850865|ref|YP_007312451.1| - 3.3e-12 47.1 0.0 8.8e-12 45.7 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.7 gi|435850865|ref|YP_007312451.1| - 4.1e-10 39.8 0.0 8.7e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|435850865|ref|YP_007312451.1| - 0.00056 19.6 0.0 0.0019 17.9 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif PsbU PF06514.11 gi|435850865|ref|YP_007312451.1| - 0.00071 19.5 0.0 0.0021 18.0 0.0 1.8 1 0 0 1 1 1 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_5 PF14520.6 gi|435850865|ref|YP_007312451.1| - 0.027 15.1 0.0 0.09 13.4 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix domain HHH_8 PF14716.6 gi|435850865|ref|YP_007312451.1| - 0.072 13.5 0.0 0.21 12.0 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain LPG_synthase_TM PF03706.13 gi|435850866|ref|YP_007312452.1| - 7.1e-40 137.4 25.6 8.4e-40 137.2 25.6 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region NTP_transferase PF00483.23 gi|435850867|ref|YP_007312453.1| - 8.5e-51 172.9 0.0 1.2e-50 172.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|435850867|ref|YP_007312453.1| - 1.1e-17 63.0 22.3 2.9e-07 29.9 0.4 4.8 1 1 3 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|435850867|ref|YP_007312453.1| - 3.8e-09 37.1 0.0 5.6e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|435850867|ref|YP_007312453.1| - 2.2e-07 30.5 23.2 0.00041 20.0 3.6 4.4 2 2 3 5 5 5 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|435850867|ref|YP_007312453.1| - 0.0038 16.2 2.6 0.03 13.3 0.6 2.1 1 1 1 2 2 2 1 L-fucokinase Glycos_transf_2 PF00535.26 gi|435850867|ref|YP_007312453.1| - 0.0064 16.3 0.0 0.0095 15.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Fer4_12 PF13353.6 gi|435850867|ref|YP_007312453.1| - 0.072 13.4 0.0 5.7 7.2 0.0 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF4954 PF16314.5 gi|435850867|ref|YP_007312453.1| - 0.41 8.7 4.8 0.57 8.2 4.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) tRNA_anti-codon PF01336.25 gi|435850868|ref|YP_007312454.1| - 3.5e-09 36.5 1.0 6.1e-09 35.7 0.8 1.5 1 1 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.7 gi|435850868|ref|YP_007312454.1| - 0.045 13.4 0.5 0.045 13.4 0.5 1.6 1 1 1 2 2 2 0 tRNA_anti-like DUF4131 PF13567.6 gi|435850868|ref|YP_007312454.1| - 0.13 11.9 0.2 0.25 11.0 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) FKBP_C PF00254.28 gi|435850869|ref|YP_007312455.1| - 3.8e-21 75.2 0.1 6.5e-21 74.5 0.1 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF150_C PF17384.2 gi|435850869|ref|YP_007312455.1| - 0.084 13.0 0.0 2.5 8.3 0.0 2.5 3 0 0 3 3 3 0 RimP C-terminal SH3 domain PAP2_3 PF14378.6 gi|435850870|ref|YP_007312456.1| - 9.1e-14 51.6 16.4 3.5e-13 49.7 16.4 2.0 1 1 0 1 1 1 1 PAP2 superfamily PAP2 PF01569.21 gi|435850870|ref|YP_007312456.1| - 5.4e-11 42.4 5.8 5.4e-11 42.4 5.8 2.8 1 1 0 2 2 2 1 PAP2 superfamily FIVAR PF07554.13 gi|435850871|ref|YP_007312457.1| - 2.1e-12 47.6 19.2 9.1e-07 29.5 6.6 3.3 2 0 0 2 2 2 2 FIVAR domain DUF2846 PF11008.8 gi|435850871|ref|YP_007312457.1| - 0.0061 16.5 0.2 0.071 13.1 0.0 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF2846) fn3 PF00041.21 gi|435850871|ref|YP_007312457.1| - 0.033 14.5 21.5 0.29 11.5 2.6 5.5 4 2 0 4 4 4 0 Fibronectin type III domain Phage_integrase PF00589.22 gi|435850872|ref|YP_007312458.1| - 5.4e-20 71.9 0.0 1e-19 70.9 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|435850872|ref|YP_007312458.1| - 1.7e-08 34.8 0.1 3.8e-08 33.7 0.1 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|435850872|ref|YP_007312458.1| - 0.00012 22.3 0.3 0.00082 19.6 0.2 2.3 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain DZR PF12773.7 gi|435850872|ref|YP_007312458.1| - 0.002 18.1 1.4 0.0043 17.0 1.4 1.5 1 0 0 1 1 1 1 Double zinc ribbon zf-AD PF07776.15 gi|435850872|ref|YP_007312458.1| - 0.0056 16.9 1.2 0.013 15.7 1.2 1.6 1 0 0 1 1 1 1 Zinc-finger associated domain (zf-AD) zinc_ribbon_2 PF13240.6 gi|435850872|ref|YP_007312458.1| - 0.013 15.2 3.1 0.013 15.2 3.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|435850872|ref|YP_007312458.1| - 0.017 15.8 3.1 0.033 15.0 3.1 1.4 1 0 0 1 1 1 0 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|435850872|ref|YP_007312458.1| - 0.045 13.2 0.9 0.045 13.2 0.9 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Phage_int_SAM_5 PF13102.6 gi|435850872|ref|YP_007312458.1| - 0.055 13.8 0.1 0.18 12.1 0.1 1.9 1 0 0 1 1 1 0 Phage integrase SAM-like domain TF_Zn_Ribbon PF08271.12 gi|435850872|ref|YP_007312458.1| - 0.078 12.5 1.0 1.1 8.8 0.4 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.9 gi|435850872|ref|YP_007312458.1| - 1.1 9.4 3.5 2.2 8.4 3.5 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Acetyltransf_10 PF13673.7 gi|435850873|ref|YP_007312459.1| - 1.9e-10 40.7 0.1 9.8e-10 38.5 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|435850873|ref|YP_007312459.1| - 2.3e-06 27.9 0.0 4e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|435850873|ref|YP_007312459.1| - 3.9e-05 23.9 0.0 5.6e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family DUF4600 PF15372.6 gi|435850875|ref|YP_007312461.1| - 0.0042 17.5 2.3 0.0053 17.2 2.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4600) RHH_1 PF01402.21 gi|435850875|ref|YP_007312461.1| - 0.0047 16.8 0.6 0.058 13.4 0.0 2.2 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HTH_Tnp_1_2 PF13022.6 gi|435850875|ref|YP_007312461.1| - 0.0077 16.4 0.7 0.01 16.0 0.5 1.3 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase PCRF PF03462.18 gi|435850875|ref|YP_007312461.1| - 0.012 15.5 3.8 0.014 15.3 3.8 1.0 1 0 0 1 1 1 0 PCRF domain DMPK_coil PF08826.10 gi|435850875|ref|YP_007312461.1| - 0.017 15.2 4.3 0.017 15.2 4.3 1.5 2 0 0 2 2 2 0 DMPK coiled coil domain like Ntox34 PF15606.6 gi|435850875|ref|YP_007312461.1| - 0.023 14.8 0.2 0.031 14.4 0.2 1.3 1 0 0 1 1 1 0 Bacterial toxin 34 AKNA PF12443.8 gi|435850875|ref|YP_007312461.1| - 0.073 13.7 3.0 0.11 13.2 2.9 1.3 1 1 0 1 1 1 0 AT-hook-containing transcription factor DUF3368 PF11848.8 gi|435850875|ref|YP_007312461.1| - 0.13 12.0 0.3 14 5.6 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF3368) XhlA PF10779.9 gi|435850875|ref|YP_007312461.1| - 0.39 11.0 6.4 0.38 11.0 4.8 1.5 1 1 0 1 1 1 0 Haemolysin XhlA MazE_antitoxin PF04014.18 gi|435850876|ref|YP_007312462.1| - 0.00019 21.3 0.0 0.00024 21.0 0.0 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Il2rg PF15874.5 gi|435850876|ref|YP_007312462.1| - 0.085 13.1 0.0 0.087 13.1 0.0 1.1 1 0 0 1 1 1 0 Putative Interleukin 2 receptor, gamma chain zf-CHC2 PF01807.20 gi|435850882|ref|YP_007312468.1| - 9.3e-10 38.2 0.0 2.2e-09 37.0 0.0 1.5 1 0 0 1 1 1 1 CHC2 zinc finger Toprim_N PF08275.11 gi|435850882|ref|YP_007312468.1| - 3.3e-08 33.6 0.0 5.8e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 DNA primase catalytic core, N-terminal domain Toprim_3 PF13362.6 gi|435850882|ref|YP_007312468.1| - 0.00016 22.0 0.0 0.00026 21.3 0.0 1.4 1 0 0 1 1 1 1 Toprim domain D5_N PF08706.11 gi|435850883|ref|YP_007312469.1| - 5.9e-09 36.4 0.9 2.1e-08 34.6 0.0 2.4 3 0 0 3 3 3 1 D5 N terminal like Pox_D5 PF03288.16 gi|435850883|ref|YP_007312469.1| - 0.00079 19.9 0.0 0.0024 18.3 0.0 1.8 1 0 0 1 1 1 1 Poxvirus D5 protein-like RFX_DNA_binding PF02257.15 gi|435850883|ref|YP_007312469.1| - 0.0014 19.2 0.0 0.0034 18.0 0.0 1.6 1 0 0 1 1 1 1 RFX DNA-binding domain DUF2685 PF10886.8 gi|435850883|ref|YP_007312469.1| - 0.084 13.1 0.0 0.39 10.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2685) Zn_ribbon_SprT PF17283.2 gi|435850883|ref|YP_007312469.1| - 0.094 12.6 2.4 0.25 11.3 2.4 1.8 1 0 0 1 1 1 0 SprT-like zinc ribbon domain ABC_tran PF00005.27 gi|435850883|ref|YP_007312469.1| - 0.17 12.4 0.1 0.65 10.5 0.1 1.9 1 1 0 1 1 1 0 ABC transporter Frigida PF07899.11 gi|435850884|ref|YP_007312470.1| - 0.063 12.5 0.1 0.069 12.4 0.1 1.1 1 0 0 1 1 1 0 Frigida-like protein HSDR_N PF04313.14 gi|435850886|ref|YP_007312472.1| - 7.4e-11 42.4 0.0 3.5e-05 23.8 0.0 2.2 1 1 1 2 2 2 2 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.6 gi|435850886|ref|YP_007312472.1| - 2.3e-05 24.3 0.0 5.7e-05 23.1 0.0 1.7 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) LTD PF00932.19 gi|435850887|ref|YP_007312473.1| - 1.8e-18 67.0 1.9 1.8e-18 67.0 1.9 3.5 2 1 0 2 2 2 1 Lamin Tail Domain VCBS PF13517.6 gi|435850887|ref|YP_007312473.1| - 1.1e-08 35.6 47.8 0.00031 21.3 10.7 6.3 2 1 5 7 7 7 6 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella RsgA_N PF16745.5 gi|435850887|ref|YP_007312473.1| - 0.0091 15.7 5.7 1.1e+02 2.6 0.0 5.8 6 0 0 6 6 6 0 RsgA N-terminal domain Ribosomal_S16 PF00886.19 gi|435850887|ref|YP_007312473.1| - 0.036 14.1 0.4 32 4.7 0.0 3.5 4 0 0 4 4 4 0 Ribosomal protein S16 LTD PF00932.19 gi|435850888|ref|YP_007312474.1| - 6.4e-22 78.0 1.1 6.4e-22 78.0 1.1 3.5 4 2 0 4 4 4 1 Lamin Tail Domain Lactamase_B PF00753.27 gi|435850888|ref|YP_007312474.1| - 1.3e-14 54.7 1.5 1.8e-14 54.2 0.2 2.0 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|435850888|ref|YP_007312474.1| - 2.3e-07 30.5 0.0 4.6e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|435850888|ref|YP_007312474.1| - 5.2e-06 26.4 0.1 1.4e-05 25.1 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain VCBS PF13517.6 gi|435850888|ref|YP_007312474.1| - 0.00018 22.0 42.1 0.0033 18.0 6.9 6.6 4 1 2 6 6 6 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Lactamase_B_6 PF16661.5 gi|435850888|ref|YP_007312474.1| - 0.007 15.8 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain HTH_23 PF13384.6 gi|435850889|ref|YP_007312475.1| - 1.5e-06 27.8 0.0 3.1e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 gi|435850889|ref|YP_007312475.1| - 0.00019 21.4 0.0 0.00043 20.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 gi|435850889|ref|YP_007312475.1| - 0.0004 20.4 0.2 0.0009 19.2 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix Sigma70_r4 PF04545.16 gi|435850889|ref|YP_007312475.1| - 0.00045 19.7 0.3 0.0023 17.4 0.0 2.1 1 1 1 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|435850889|ref|YP_007312475.1| - 0.00058 19.8 0.0 0.0017 18.2 0.0 1.8 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.12 gi|435850889|ref|YP_007312475.1| - 0.002 17.8 0.3 0.011 15.4 0.1 2.1 1 1 1 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|435850889|ref|YP_007312475.1| - 0.0037 17.0 0.0 0.0076 16.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|435850889|ref|YP_007312475.1| - 0.0043 16.9 0.7 0.66 9.9 0.0 3.2 4 0 0 4 4 4 1 MarR family HTH_28 PF13518.6 gi|435850889|ref|YP_007312475.1| - 0.0044 17.1 0.0 0.0088 16.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|435850889|ref|YP_007312475.1| - 0.011 15.9 0.1 0.031 14.4 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|435850889|ref|YP_007312475.1| - 0.015 15.1 0.0 0.037 13.8 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain MerR_2 PF13591.6 gi|435850889|ref|YP_007312475.1| - 0.022 14.6 0.1 0.043 13.7 0.1 1.5 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_3 PF01381.22 gi|435850889|ref|YP_007312475.1| - 0.034 14.2 0.1 0.11 12.5 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix HTH_31 PF13560.6 gi|435850889|ref|YP_007312475.1| - 0.048 14.0 0.2 0.14 12.5 0.1 1.8 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_25 PF13413.6 gi|435850889|ref|YP_007312475.1| - 0.063 13.2 0.0 2.1 8.2 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|435850889|ref|YP_007312475.1| - 0.064 13.3 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|435850890|ref|YP_007312476.1| - 0.032 14.1 0.0 0.066 13.1 0.0 1.5 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|435850890|ref|YP_007312476.1| - 0.048 13.5 0.2 0.061 13.2 0.2 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit MarR PF01047.22 gi|435850890|ref|YP_007312476.1| - 0.079 12.9 0.1 0.36 10.8 0.0 2.0 2 1 1 3 3 3 0 MarR family MarR_2 PF12802.7 gi|435850890|ref|YP_007312476.1| - 0.14 12.0 0.0 0.22 11.5 0.0 1.2 1 0 0 1 1 1 0 MarR family Peptidase_M42 PF05343.14 gi|435850890|ref|YP_007312476.1| - 0.17 10.9 0.0 0.2 10.6 0.0 1.1 1 0 0 1 1 1 0 M42 glutamyl aminopeptidase Aconitase PF00330.20 gi|435850891|ref|YP_007312477.1| - 2.6e-102 343.2 2.4 1.8e-100 337.2 2.4 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|435850891|ref|YP_007312477.1| - 0.025 13.3 0.0 0.04 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Imm71 PF15602.6 gi|435850892|ref|YP_007312478.1| - 0.0041 17.2 0.1 0.0047 17.0 0.1 1.0 1 0 0 1 1 1 1 Immunity protein 71 Seryl_tRNA_N PF02403.22 gi|435850892|ref|YP_007312478.1| - 0.059 13.6 0.7 0.079 13.2 0.7 1.2 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain HMG-CoA_red PF00368.18 gi|435850893|ref|YP_007312479.1| - 1.6e-136 455.2 4.4 1.8e-136 455.0 4.4 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DrsE PF02635.15 gi|435850894|ref|YP_007312480.1| - 4.3e-09 36.7 0.0 5.2e-09 36.5 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|435850894|ref|YP_007312480.1| - 2.3e-06 27.6 0.0 2.4e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family ATPase PF06745.13 gi|435850895|ref|YP_007312481.1| - 1.9e-49 168.1 1.9 2.2e-49 167.9 1.9 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|435850895|ref|YP_007312481.1| - 6.3e-09 35.0 0.1 7.8e-09 34.7 0.1 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein Rad51 PF08423.11 gi|435850895|ref|YP_007312481.1| - 4.6e-05 22.8 1.8 0.0036 16.6 0.3 2.6 2 1 1 3 3 3 1 Rad51 AAA_25 PF13481.6 gi|435850895|ref|YP_007312481.1| - 0.0002 21.0 0.0 0.00029 20.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|435850895|ref|YP_007312481.1| - 0.00023 20.6 0.0 0.00062 19.2 0.0 1.8 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA PF00004.29 gi|435850895|ref|YP_007312481.1| - 0.0014 19.0 0.7 0.0052 17.2 0.7 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MEDS PF14417.6 gi|435850895|ref|YP_007312481.1| - 0.0044 16.9 0.0 0.0069 16.2 0.0 1.3 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain DUF2075 PF09848.9 gi|435850895|ref|YP_007312481.1| - 0.03 13.6 0.1 0.04 13.2 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|435850895|ref|YP_007312481.1| - 0.1 12.9 0.0 0.16 12.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|435850895|ref|YP_007312481.1| - 0.13 11.9 0.5 0.24 11.1 0.5 1.5 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|435850895|ref|YP_007312481.1| - 0.15 12.1 0.1 0.21 11.6 0.1 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF5591 PF17884.1 gi|435850896|ref|YP_007312482.1| - 2.2e-19 69.9 0.3 3.2e-19 69.3 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TrmB PF01978.19 gi|435850897|ref|YP_007312483.1| - 3.9e-16 58.7 0.2 5.4e-16 58.2 0.2 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|435850897|ref|YP_007312483.1| - 0.00051 19.8 0.2 0.00091 19.0 0.2 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|435850897|ref|YP_007312483.1| - 0.00091 19.1 0.0 0.0016 18.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|435850897|ref|YP_007312483.1| - 0.0023 17.8 0.0 0.0034 17.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|435850897|ref|YP_007312483.1| - 0.0026 17.8 0.0 0.0045 17.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|435850897|ref|YP_007312483.1| - 0.0031 17.4 0.0 0.0045 16.9 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|435850897|ref|YP_007312483.1| - 0.011 15.7 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.6 gi|435850897|ref|YP_007312483.1| - 0.051 14.1 0.1 0.099 13.2 0.1 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|435850897|ref|YP_007312483.1| - 0.052 13.4 0.1 0.12 12.3 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Sorb PF02208.16 gi|435850897|ref|YP_007312483.1| - 0.088 12.7 0.3 0.23 11.4 0.3 1.7 1 0 0 1 1 1 0 Sorbin homologous domain TFIIE_alpha PF02002.17 gi|435850897|ref|YP_007312483.1| - 0.13 12.2 0.1 0.17 11.8 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit OrfB_IS605 PF01385.19 gi|435850898|ref|YP_007312484.1| - 7.6e-27 93.9 1.1 7.6e-27 93.9 1.1 1.7 2 0 0 2 2 2 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|435850898|ref|YP_007312484.1| - 2.5e-21 74.9 1.3 5.3e-21 73.8 1.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 gi|435850898|ref|YP_007312484.1| - 2.3e-18 65.8 0.4 4.9e-18 64.8 0.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_10 PF10058.9 gi|435850898|ref|YP_007312484.1| - 0.019 14.7 0.6 0.04 13.6 0.6 1.5 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF4428 PF14471.6 gi|435850898|ref|YP_007312484.1| - 0.022 14.7 1.4 0.022 14.7 1.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) zf-piccolo PF05715.13 gi|435850898|ref|YP_007312484.1| - 0.024 14.8 0.4 0.024 14.8 0.4 1.7 2 0 0 2 2 2 0 Piccolo Zn-finger Nepo_coat_C PF03688.14 gi|435850898|ref|YP_007312484.1| - 0.041 13.7 0.1 1.9 8.3 0.0 2.8 3 0 0 3 3 3 0 Nepovirus coat protein, C-terminal domain zf-Sec23_Sec24 PF04810.15 gi|435850898|ref|YP_007312484.1| - 0.1 12.7 0.6 22 5.2 0.1 2.8 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Aminotran_1_2 PF00155.21 gi|435850899|ref|YP_007312485.1| - 3.7e-65 220.5 0.0 4.2e-65 220.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|435850899|ref|YP_007312485.1| - 1.7e-12 47.4 0.1 2.4e-12 46.8 0.1 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|435850899|ref|YP_007312485.1| - 2.6e-09 36.5 0.0 3.7e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|435850899|ref|YP_007312485.1| - 2.5e-08 32.9 0.0 3.6e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|435850899|ref|YP_007312485.1| - 2e-05 24.0 0.0 3.1e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Alliinase_C PF04864.13 gi|435850899|ref|YP_007312485.1| - 0.00054 18.9 0.0 0.0054 15.6 0.0 1.9 2 0 0 2 2 2 1 Allinase OKR_DC_1 PF01276.20 gi|435850899|ref|YP_007312485.1| - 0.0044 15.8 0.0 0.006 15.4 0.0 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Aminotran_3 PF00202.21 gi|435850899|ref|YP_007312485.1| - 0.01 14.5 0.0 0.089 11.4 0.0 2.0 1 1 0 2 2 2 0 Aminotransferase class-III PET122 PF05476.11 gi|435850899|ref|YP_007312485.1| - 0.16 11.2 0.0 0.26 10.6 0.0 1.2 1 0 0 1 1 1 0 PET122 AsnC_trans_reg PF01037.21 gi|435850900|ref|YP_007312486.1| - 4.5e-14 52.2 0.2 8.8e-14 51.2 0.2 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|435850900|ref|YP_007312486.1| - 3.6e-13 48.8 0.0 1.5e-12 46.9 0.0 2.1 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|435850900|ref|YP_007312486.1| - 2.8e-07 30.2 0.1 1e-06 28.4 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|435850900|ref|YP_007312486.1| - 6.1e-07 29.3 0.2 1.9e-06 27.7 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|435850900|ref|YP_007312486.1| - 3.6e-05 23.8 0.0 6.2e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF1670 PF07900.11 gi|435850900|ref|YP_007312486.1| - 0.00014 21.3 0.3 0.00033 20.1 0.1 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1670) Phage_rep_O PF04492.13 gi|435850900|ref|YP_007312486.1| - 0.0003 21.3 0.4 0.026 15.1 0.0 2.1 2 0 0 2 2 2 1 Bacteriophage replication protein O MarR_2 PF12802.7 gi|435850900|ref|YP_007312486.1| - 0.00081 19.2 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|435850900|ref|YP_007312486.1| - 0.00092 19.1 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 MarR family DprA_WH PF17782.1 gi|435850900|ref|YP_007312486.1| - 0.0013 18.8 0.0 0.0021 18.1 0.0 1.3 1 0 0 1 1 1 1 DprA winged helix domain TFIIE_alpha PF02002.17 gi|435850900|ref|YP_007312486.1| - 0.0036 17.1 0.1 0.0074 16.1 0.1 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit Rio2_N PF09202.11 gi|435850900|ref|YP_007312486.1| - 0.013 15.7 0.2 1.8 8.9 0.0 2.2 2 0 0 2 2 2 0 Rio2, N-terminal Phage_rep_org_N PF09681.10 gi|435850900|ref|YP_007312486.1| - 0.065 13.2 0.1 9.6 6.2 0.0 2.1 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) TrmB PF01978.19 gi|435850900|ref|YP_007312486.1| - 0.068 13.1 0.0 0.54 10.2 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|435850900|ref|YP_007312486.1| - 0.07 13.1 0.0 0.18 11.8 0.0 1.8 1 1 0 1 1 1 0 HTH domain RPA_C PF08784.11 gi|435850900|ref|YP_007312486.1| - 0.087 13.5 0.1 0.35 11.5 0.0 1.9 3 0 0 3 3 3 0 Replication protein A C terminal HTH_15 PF12324.8 gi|435850900|ref|YP_007312486.1| - 0.095 12.7 0.0 0.42 10.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase HTH_39 PF14090.6 gi|435850900|ref|YP_007312486.1| - 0.1 12.3 0.4 0.24 11.2 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|435850900|ref|YP_007312486.1| - 0.12 12.7 0.1 1.2 9.5 0.0 2.4 2 1 1 3 3 3 0 Transcriptional regulator Ribosomal_S8e PF01201.22 gi|435850901|ref|YP_007312487.1| - 9.2e-36 123.0 2.6 1.1e-35 122.8 2.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e SBDS PF01172.18 gi|435850901|ref|YP_007312487.1| - 0.052 13.6 0.1 0.1 12.7 0.0 1.5 2 0 0 2 2 2 0 Shwachman-Bodian-Diamond syndrome (SBDS) protein Lactamase_B_2 PF12706.7 gi|435850902|ref|YP_007312488.1| - 2.8e-20 72.7 0.0 4e-09 36.3 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|435850902|ref|YP_007312488.1| - 8.5e-11 42.2 0.1 1.7e-09 38.0 0.1 2.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|435850902|ref|YP_007312488.1| - 1.2e-05 24.9 0.0 2.2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease AAA PF00004.29 gi|435850904|ref|YP_007312490.1| - 1e-37 129.5 0.0 1.7e-37 128.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|435850904|ref|YP_007312490.1| - 2.3e-09 36.9 0.1 4.4e-09 36.0 0.1 1.5 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|435850904|ref|YP_007312490.1| - 1.4e-07 31.8 0.1 3.8e-07 30.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|435850904|ref|YP_007312490.1| - 1.1e-05 25.3 0.1 0.00014 21.7 0.1 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain TIP49 PF06068.13 gi|435850904|ref|YP_007312490.1| - 1.2e-05 24.7 0.0 2.6e-05 23.6 0.0 1.5 1 1 0 1 1 1 1 TIP49 P-loop domain AAA_22 PF13401.6 gi|435850904|ref|YP_007312490.1| - 2.1e-05 24.8 0.5 0.0015 18.8 0.0 2.5 1 1 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|435850904|ref|YP_007312490.1| - 4.3e-05 23.5 0.0 0.00031 20.8 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|435850904|ref|YP_007312490.1| - 6.2e-05 23.4 0.3 0.006 17.0 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|435850904|ref|YP_007312490.1| - 8.6e-05 22.3 0.0 0.00014 21.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_28 PF13521.6 gi|435850904|ref|YP_007312490.1| - 0.00016 22.0 0.0 0.0003 21.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|435850904|ref|YP_007312490.1| - 0.00026 20.2 0.0 0.00082 18.6 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_18 PF13238.6 gi|435850904|ref|YP_007312490.1| - 0.0012 19.4 0.0 0.0036 17.9 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_7 PF12775.7 gi|435850904|ref|YP_007312490.1| - 0.0014 18.1 0.1 0.013 15.0 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|435850904|ref|YP_007312490.1| - 0.0015 18.0 0.1 0.0032 16.9 0.1 1.6 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|435850904|ref|YP_007312490.1| - 0.0028 17.8 0.0 0.0047 17.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain Bac_DnaA PF00308.18 gi|435850904|ref|YP_007312490.1| - 0.0068 16.3 0.0 0.012 15.4 0.0 1.4 1 1 0 1 1 1 1 Bacterial dnaA protein Sigma54_activat PF00158.26 gi|435850904|ref|YP_007312490.1| - 0.0075 16.0 0.0 0.017 14.8 0.0 1.7 2 0 0 2 2 1 1 Sigma-54 interaction domain TniB PF05621.11 gi|435850904|ref|YP_007312490.1| - 0.0089 15.4 0.1 0.04 13.3 0.0 2.0 2 0 0 2 2 2 1 Bacterial TniB protein RNA_helicase PF00910.22 gi|435850904|ref|YP_007312490.1| - 0.011 16.1 0.0 0.039 14.3 0.0 1.9 2 0 0 2 2 2 0 RNA helicase TsaE PF02367.17 gi|435850904|ref|YP_007312490.1| - 0.024 14.6 0.0 0.049 13.6 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|435850904|ref|YP_007312490.1| - 0.026 14.0 0.0 0.05 13.1 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein IPT PF01745.16 gi|435850904|ref|YP_007312490.1| - 0.031 13.7 0.0 0.05 13.0 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase PduV-EutP PF10662.9 gi|435850904|ref|YP_007312490.1| - 0.039 13.7 0.0 0.091 12.5 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.6 gi|435850904|ref|YP_007312490.1| - 0.04 13.6 0.1 0.073 12.8 0.1 1.5 1 1 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|435850904|ref|YP_007312490.1| - 0.042 13.0 0.0 0.076 12.1 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ABC_tran PF00005.27 gi|435850904|ref|YP_007312490.1| - 0.064 13.8 0.0 0.21 12.1 0.0 1.8 2 0 0 2 2 1 0 ABC transporter NACHT PF05729.12 gi|435850904|ref|YP_007312490.1| - 0.066 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|435850904|ref|YP_007312490.1| - 0.072 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase GATase_7 PF13537.6 gi|435850905|ref|YP_007312491.1| - 9.8e-24 83.6 0.0 1.6e-23 82.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|435850905|ref|YP_007312491.1| - 3.3e-21 75.9 0.0 7.2e-21 74.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|435850905|ref|YP_007312491.1| - 4.5e-08 32.3 0.0 1e-07 31.1 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|435850905|ref|YP_007312491.1| - 5.1e-05 22.8 0.1 9e-05 22.0 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|435850905|ref|YP_007312491.1| - 0.089 12.3 0.1 0.33 10.4 0.1 1.9 2 0 0 2 2 2 0 Phosphoribosyl transferase Ribosomal_L37e PF01907.19 gi|435850906|ref|YP_007312492.1| - 9.2e-22 77.0 11.8 1e-21 76.8 11.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e zn-ribbon_14 PF16503.5 gi|435850906|ref|YP_007312492.1| - 0.093 12.2 4.9 0.62 9.6 0.2 2.5 2 0 0 2 2 2 0 Zinc-ribbon zf-C2H2_3 PF13878.6 gi|435850906|ref|YP_007312492.1| - 0.4 10.6 3.4 10 6.0 0.3 2.3 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO YhfH PF14149.6 gi|435850906|ref|YP_007312492.1| - 1.1 9.3 6.8 0.56 10.2 1.0 2.3 1 1 1 2 2 2 0 YhfH-like protein MraY_sig1 PF10555.9 gi|435850906|ref|YP_007312492.1| - 2.4 7.9 4.8 0.36 10.4 1.3 1.5 2 0 0 2 2 2 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LSM PF01423.22 gi|435850907|ref|YP_007312493.1| - 2.1e-23 81.8 0.2 2.3e-23 81.7 0.2 1.0 1 0 0 1 1 1 1 LSM domain Phos_pyr_kin PF08543.12 gi|435850908|ref|YP_007312494.1| - 9.4e-81 270.8 2.5 9.4e-81 270.8 2.5 1.6 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|435850908|ref|YP_007312494.1| - 6.4e-60 201.5 0.6 1.1e-59 200.7 0.6 1.4 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|435850908|ref|YP_007312494.1| - 3.4e-10 39.7 0.6 5.4e-10 39.1 0.6 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.15 gi|435850908|ref|YP_007312494.1| - 0.0026 17.2 2.9 0.0026 17.2 2.9 1.8 1 1 0 2 2 2 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|435850908|ref|YP_007312494.1| - 0.0037 16.8 0.7 0.0054 16.2 0.7 1.4 1 1 0 1 1 1 1 Carbohydrate kinase Methyltrn_RNA_2 PF04013.12 gi|435850909|ref|YP_007312495.1| - 2.8e-59 200.2 0.0 3.1e-59 200.0 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase THUMP PF02926.17 gi|435850910|ref|YP_007312496.1| - 1.5e-11 44.6 0.0 3e-11 43.6 0.0 1.6 1 0 0 1 1 1 1 THUMP domain DUF1059 PF06348.11 gi|435850910|ref|YP_007312496.1| - 0.032 14.5 0.6 0.08 13.2 0.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1059) Ribosomal_L21e PF01157.18 gi|435850911|ref|YP_007312497.1| - 1.5e-34 117.9 0.6 1.6e-34 117.7 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|435850912|ref|YP_007312498.1| - 5e-13 49.5 3.1 7.7e-13 48.8 3.1 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb4 IFT57 PF10498.9 gi|435850912|ref|YP_007312498.1| - 0.007 15.4 1.1 0.0083 15.1 1.1 1.1 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 EF-hand_8 PF13833.6 gi|435850912|ref|YP_007312498.1| - 0.017 15.0 1.6 0.1 12.4 0.1 2.6 3 0 0 3 3 3 0 EF-hand domain pair HEM4 PF02602.15 gi|435850912|ref|YP_007312498.1| - 0.091 12.1 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD FliG_M PF14841.6 gi|435850912|ref|YP_007312498.1| - 0.18 12.1 3.2 0.21 11.8 0.3 2.2 2 1 0 2 2 2 0 FliG middle domain DUF655 PF04919.12 gi|435850913|ref|YP_007312499.1| - 3.8e-63 212.7 0.0 4.3e-63 212.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|435850913|ref|YP_007312499.1| - 0.0019 18.5 0.0 0.0035 17.6 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|435850913|ref|YP_007312499.1| - 0.011 16.0 0.0 0.018 15.3 0.0 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|435850913|ref|YP_007312499.1| - 0.13 12.9 0.2 1.9 9.2 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain RrnaAD PF00398.20 gi|435850914|ref|YP_007312500.1| - 6.2e-60 202.5 0.0 8.1e-60 202.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|435850914|ref|YP_007312500.1| - 2.2e-07 31.5 0.0 3.9e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|435850914|ref|YP_007312500.1| - 3.5e-05 23.6 0.3 5.6e-05 23.0 0.0 1.5 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_11 PF08241.12 gi|435850914|ref|YP_007312500.1| - 5.8e-05 23.7 0.0 0.00011 22.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|435850914|ref|YP_007312500.1| - 0.0051 16.6 0.0 0.0075 16.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|435850914|ref|YP_007312500.1| - 0.007 17.1 0.0 0.012 16.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|435850914|ref|YP_007312500.1| - 0.0076 15.8 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|435850914|ref|YP_007312500.1| - 0.0079 16.0 0.1 0.013 15.2 0.1 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.11 gi|435850914|ref|YP_007312500.1| - 0.045 13.4 0.0 0.07 12.7 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_PK PF05891.12 gi|435850914|ref|YP_007312500.1| - 0.14 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase CMAS PF02353.20 gi|435850914|ref|YP_007312500.1| - 0.19 11.0 0.0 0.27 10.5 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|435850914|ref|YP_007312500.1| - 0.22 11.5 0.0 0.39 10.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|435850915|ref|YP_007312501.1| - 1.5e-07 31.1 0.0 6.2e-07 29.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|435850915|ref|YP_007312501.1| - 4.3e-06 26.6 0.0 5.6e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|435850915|ref|YP_007312501.1| - 0.0004 20.2 0.0 0.00054 19.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0146 PF03686.13 gi|435850915|ref|YP_007312501.1| - 0.0006 19.7 0.0 0.0012 18.7 0.0 1.5 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0146) Methyltransf_25 PF13649.6 gi|435850915|ref|YP_007312501.1| - 0.00076 20.1 0.0 0.0013 19.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|435850915|ref|YP_007312501.1| - 0.0018 18.1 0.0 0.0028 17.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435850915|ref|YP_007312501.1| - 0.0022 18.6 0.0 0.004 17.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|435850915|ref|YP_007312501.1| - 0.0026 17.2 0.1 0.0031 17.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.12 gi|435850915|ref|YP_007312501.1| - 0.003 17.2 0.0 0.0067 16.0 0.0 1.5 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|435850915|ref|YP_007312501.1| - 0.014 16.2 0.0 0.022 15.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|435850915|ref|YP_007312501.1| - 0.019 14.7 0.0 0.031 14.0 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase TPP_enzyme_C PF02775.21 gi|435850916|ref|YP_007312502.1| - 2.2e-29 102.2 0.1 3.2e-29 101.7 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|435850916|ref|YP_007312502.1| - 4.6e-26 90.7 1.1 6.3e-26 90.3 0.0 1.8 3 0 0 3 3 3 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|435850917|ref|YP_007312503.1| - 5.8e-60 202.9 0.2 8.4e-60 202.4 0.2 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|435850917|ref|YP_007312503.1| - 1.8e-35 122.6 0.1 4.1e-35 121.4 0.1 1.7 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.20 gi|435850917|ref|YP_007312503.1| - 2e-06 27.7 0.0 4.6e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|435850917|ref|YP_007312503.1| - 5.8e-05 23.3 0.0 0.00013 22.2 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|435850917|ref|YP_007312503.1| - 0.0003 20.5 0.3 0.00051 19.7 0.3 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATPase PF06745.13 gi|435850918|ref|YP_007312504.1| - 2.6e-44 151.3 0.3 2.3e-43 148.2 0.3 1.9 1 1 0 1 1 1 1 KaiC RecA PF00154.21 gi|435850918|ref|YP_007312504.1| - 8e-05 22.2 0.0 0.00013 21.6 0.0 1.4 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.11 gi|435850918|ref|YP_007312504.1| - 0.00028 19.7 0.1 0.00089 18.0 0.1 1.7 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|435850918|ref|YP_007312504.1| - 0.00031 20.4 0.1 0.001 18.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|435850918|ref|YP_007312504.1| - 0.0011 18.4 0.0 0.0017 17.7 0.0 1.5 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain DUF2075 PF09848.9 gi|435850918|ref|YP_007312504.1| - 0.0017 17.7 0.0 0.0033 16.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 gi|435850918|ref|YP_007312504.1| - 0.0092 15.7 0.7 0.035 13.8 0.7 2.0 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|435850918|ref|YP_007312504.1| - 0.012 15.4 0.2 0.055 13.2 0.0 2.0 2 1 1 3 3 3 0 IstB-like ATP binding protein NTPase_1 PF03266.15 gi|435850918|ref|YP_007312504.1| - 0.017 15.0 0.5 4 7.3 0.1 2.2 2 0 0 2 2 2 0 NTPase AAA_22 PF13401.6 gi|435850918|ref|YP_007312504.1| - 0.03 14.6 0.1 0.41 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|435850918|ref|YP_007312504.1| - 0.031 14.0 0.0 0.053 13.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 gi|435850918|ref|YP_007312504.1| - 0.032 14.4 0.0 0.054 13.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_18 PF13238.6 gi|435850918|ref|YP_007312504.1| - 0.06 13.9 0.0 0.085 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|435850918|ref|YP_007312504.1| - 0.086 13.2 0.3 0.21 12.0 0.3 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|435850918|ref|YP_007312504.1| - 0.15 11.7 0.0 0.28 10.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain AIRC PF00731.20 gi|435850919|ref|YP_007312505.1| - 2.1e-44 150.7 3.3 2.3e-44 150.6 3.3 1.0 1 0 0 1 1 1 1 AIR carboxylase Fe-ADH_2 PF13685.6 gi|435850919|ref|YP_007312505.1| - 0.023 14.4 0.4 0.027 14.2 0.4 1.1 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase CM_2 PF01817.21 gi|435850920|ref|YP_007312506.1| - 3e-16 59.5 3.4 3.4e-16 59.3 3.4 1.0 1 0 0 1 1 1 1 Chorismate mutase type II GHMP_kinases_N PF00288.26 gi|435850921|ref|YP_007312507.1| - 5.3e-13 49.0 1.7 1.2e-12 47.9 1.7 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|435850921|ref|YP_007312507.1| - 0.027 14.8 0.1 0.19 12.1 0.0 2.3 2 0 0 2 2 2 0 GHMP kinases C terminal Fer4 PF00037.27 gi|435850922|ref|YP_007312508.1| - 2.2e-50 166.6 89.0 2.1e-07 30.5 4.9 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435850922|ref|YP_007312508.1| - 7.7e-44 148.1 140.4 2.6e-10 40.7 8.3 5.4 1 1 6 7 7 7 7 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435850922|ref|YP_007312508.1| - 3.5e-30 104.7 60.4 8.1e-10 39.5 7.2 7.2 7 0 0 7 7 7 7 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|435850922|ref|YP_007312508.1| - 1.2e-29 102.2 59.8 3e-11 43.3 4.3 5.7 2 2 4 6 6 6 6 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435850922|ref|YP_007312508.1| - 7.9e-28 96.4 70.4 4.9e-06 26.6 0.3 7.6 4 2 4 8 8 8 8 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435850922|ref|YP_007312508.1| - 1.3e-27 94.6 92.3 1.1e-05 25.3 3.2 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_21 PF14697.6 gi|435850922|ref|YP_007312508.1| - 4.1e-25 87.7 74.9 6.1e-07 29.5 13.1 6.2 4 2 2 6 6 6 6 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435850922|ref|YP_007312508.1| - 7.5e-22 76.0 81.1 3.8e-05 23.5 1.8 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_4 PF12800.7 gi|435850922|ref|YP_007312508.1| - 7.6e-20 69.7 73.5 0.00035 20.9 2.0 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_17 PF13534.6 gi|435850922|ref|YP_007312508.1| - 2.9e-19 69.4 59.3 8.2e-05 23.1 10.6 6.3 5 2 0 5 5 5 5 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435850922|ref|YP_007312508.1| - 1.1e-13 51.1 106.0 0.0033 18.3 5.7 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_8 PF13183.6 gi|435850922|ref|YP_007312508.1| - 1.7e-13 50.8 70.4 2e-05 25.0 6.9 6.3 2 2 6 8 8 8 7 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|435850922|ref|YP_007312508.1| - 9e-08 32.5 75.8 0.15 12.6 0.8 8.5 8 1 1 9 9 9 6 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|435850922|ref|YP_007312508.1| - 0.00094 20.0 71.9 0.12 13.2 0.9 8.0 4 2 6 10 10 10 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|435850922|ref|YP_007312508.1| - 0.0021 18.3 73.0 0.25 11.6 1.1 7.9 1 1 3 7 7 7 4 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|435850922|ref|YP_007312508.1| - 0.087 13.0 39.4 0.15 12.2 5.6 5.7 3 1 3 6 6 6 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_15 PF13459.6 gi|435850922|ref|YP_007312508.1| - 3.1 8.6 68.0 0.36 11.6 0.6 8.9 6 2 0 6 6 4 0 4Fe-4S single cluster domain Amidohydro_3 PF07969.11 gi|435850923|ref|YP_007312509.1| - 8.2e-89 299.2 0.0 9.8e-89 299.0 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|435850923|ref|YP_007312509.1| - 0.00016 21.1 0.1 0.033 13.5 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family GXGXG PF01493.19 gi|435850924|ref|YP_007312510.1| - 3.8e-09 36.4 21.7 1.3e-08 34.6 21.0 2.0 1 1 1 2 2 2 2 GXGXG motif YqfD PF06898.11 gi|435850924|ref|YP_007312510.1| - 2.8 6.7 4.1 9.4 4.9 3.2 2.3 1 1 1 2 2 2 0 Putative stage IV sporulation protein YqfD Molydop_binding PF01568.21 gi|435850925|ref|YP_007312511.1| - 4.6e-08 33.1 0.0 6.9e-08 32.5 0.0 1.3 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.22 gi|435850926|ref|YP_007312512.1| - 8.2e-16 58.0 0.0 1.6e-15 57.0 0.0 1.6 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.22 gi|435850926|ref|YP_007312512.1| - 0.0047 16.7 0.0 1.4 8.6 0.0 3.4 3 1 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain FdhD-NarQ PF02634.15 gi|435850927|ref|YP_007312513.1| - 6.1e-51 173.4 0.0 7.8e-51 173.0 0.0 1.1 1 0 0 1 1 1 1 FdhD/NarQ family CbiX PF01903.17 gi|435850928|ref|YP_007312514.1| - 6.2e-30 103.7 0.0 7e-30 103.5 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|435850928|ref|YP_007312514.1| - 2.6e-07 30.3 0.0 3e-07 30.0 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Peptidase_C11 PF03415.14 gi|435850929|ref|YP_007312515.1| - 5.3e-39 134.6 0.3 1.1e-37 130.3 0.3 2.0 1 1 0 1 1 1 1 Clostripain family DUF169 PF02596.15 gi|435850930|ref|YP_007312516.1| - 4.7e-66 222.6 0.0 5.3e-66 222.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 AAA_2 PF07724.14 gi|435850931|ref|YP_007312517.1| - 6.5e-57 192.4 0.1 1.1e-51 175.3 0.0 2.9 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_lid_9 PF17871.1 gi|435850931|ref|YP_007312517.1| - 1.1e-34 118.4 5.8 1.1e-34 118.4 5.8 3.0 3 0 0 3 3 2 1 AAA lid domain AAA PF00004.29 gi|435850931|ref|YP_007312517.1| - 2.1e-25 89.6 0.2 3.4e-12 46.9 0.1 3.1 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) ClpB_D2-small PF10431.9 gi|435850931|ref|YP_007312517.1| - 1.6e-24 85.7 0.4 1.6e-24 85.7 0.4 3.3 3 0 0 3 3 2 1 C-terminal, D2-small domain, of ClpB protein Clp_N PF02861.20 gi|435850931|ref|YP_007312517.1| - 2.2e-24 85.3 3.0 1.5e-12 47.5 0.4 3.3 2 0 0 2 2 2 2 Clp amino terminal domain, pathogenicity island component AAA_5 PF07728.14 gi|435850931|ref|YP_007312517.1| - 2.7e-19 69.5 0.2 9.9e-14 51.5 0.0 3.5 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|435850931|ref|YP_007312517.1| - 3.7e-11 43.7 10.4 6.9e-07 29.8 0.4 5.4 5 1 0 5 5 4 2 AAA ATPase domain AAA_22 PF13401.6 gi|435850931|ref|YP_007312517.1| - 3.8e-09 36.9 0.0 0.0048 17.2 0.0 4.0 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|435850931|ref|YP_007312517.1| - 4.6e-09 37.1 8.2 0.14 12.6 10.1 3.8 3 0 0 3 3 3 2 AAA domain IstB_IS21 PF01695.17 gi|435850931|ref|YP_007312517.1| - 1.3e-08 34.8 0.0 0.0022 17.7 0.0 2.7 2 0 0 2 2 2 2 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|435850931|ref|YP_007312517.1| - 2e-08 34.1 0.0 0.00016 21.4 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_14 PF13173.6 gi|435850931|ref|YP_007312517.1| - 3.3e-08 33.6 0.0 0.0037 17.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain TniB PF05621.11 gi|435850931|ref|YP_007312517.1| - 1.6e-07 30.9 0.2 0.0006 19.3 0.0 4.5 3 1 0 3 3 3 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|435850931|ref|YP_007312517.1| - 2e-07 31.1 6.2 0.014 15.3 0.7 4.1 3 1 0 3 3 2 2 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|435850931|ref|YP_007312517.1| - 2.1e-07 30.6 0.0 0.0054 16.3 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_18 PF13238.6 gi|435850931|ref|YP_007312517.1| - 4.1e-06 27.4 0.5 0.045 14.3 0.0 3.6 3 0 0 3 3 3 1 AAA domain NACHT PF05729.12 gi|435850931|ref|YP_007312517.1| - 9.5e-06 25.6 0.0 0.014 15.4 0.0 2.8 2 1 0 2 2 2 1 NACHT domain RsgA_GTPase PF03193.16 gi|435850931|ref|YP_007312517.1| - 1.2e-05 25.3 0.0 0.17 11.8 0.0 2.9 2 0 0 2 2 2 2 RsgA GTPase ResIII PF04851.15 gi|435850931|ref|YP_007312517.1| - 1.3e-05 25.3 0.1 0.17 11.9 0.0 3.6 2 1 0 3 3 3 2 Type III restriction enzyme, res subunit ABC_tran PF00005.27 gi|435850931|ref|YP_007312517.1| - 1.5e-05 25.5 0.2 0.09 13.3 0.0 3.6 3 0 0 3 3 3 1 ABC transporter Roc PF08477.13 gi|435850931|ref|YP_007312517.1| - 1.7e-05 25.0 0.0 0.22 11.7 0.0 2.8 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase DUF815 PF05673.13 gi|435850931|ref|YP_007312517.1| - 3e-05 23.3 0.2 0.013 14.7 0.1 2.8 2 1 0 2 2 2 1 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|435850931|ref|YP_007312517.1| - 3.4e-05 24.2 0.0 0.25 11.8 0.0 2.8 2 0 0 2 2 2 2 RNA helicase T2SSE PF00437.20 gi|435850931|ref|YP_007312517.1| - 4.6e-05 22.6 0.0 0.0097 15.0 0.0 3.2 3 0 0 3 3 3 1 Type II/IV secretion system protein AAA_28 PF13521.6 gi|435850931|ref|YP_007312517.1| - 7.2e-05 23.1 0.6 0.77 10.0 0.0 3.8 3 0 0 3 3 3 2 AAA domain Zeta_toxin PF06414.12 gi|435850931|ref|YP_007312517.1| - 0.00011 21.6 0.0 0.02 14.1 0.0 2.9 2 0 0 2 2 2 1 Zeta toxin RuvB_N PF05496.12 gi|435850931|ref|YP_007312517.1| - 0.00016 21.5 2.0 0.16 11.7 0.0 3.9 3 1 0 3 3 2 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|435850931|ref|YP_007312517.1| - 0.00017 21.1 0.2 1.5 8.1 0.1 3.4 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|435850931|ref|YP_007312517.1| - 0.00032 20.7 0.0 1.3 9.0 0.0 2.9 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|435850931|ref|YP_007312517.1| - 0.001 18.6 0.1 0.88 9.0 0.0 2.7 2 0 0 2 2 2 1 PhoH-like protein Torsin PF06309.11 gi|435850931|ref|YP_007312517.1| - 0.0014 18.7 0.0 0.005 16.9 0.0 1.9 2 0 0 2 2 1 1 Torsin Bac_DnaA PF00308.18 gi|435850931|ref|YP_007312517.1| - 0.0017 18.2 0.0 1.8 8.3 0.0 2.7 2 0 0 2 2 2 1 Bacterial dnaA protein DUF87 PF01935.17 gi|435850931|ref|YP_007312517.1| - 0.0021 18.2 10.7 0.39 10.8 0.0 4.6 5 0 0 5 5 4 1 Helicase HerA, central domain AAA_30 PF13604.6 gi|435850931|ref|YP_007312517.1| - 0.0025 17.6 0.1 0.77 9.4 0.1 3.2 2 1 0 2 2 2 1 AAA domain AAA_3 PF07726.11 gi|435850931|ref|YP_007312517.1| - 0.0026 17.6 0.1 0.39 10.6 0.0 3.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|435850931|ref|YP_007312517.1| - 0.0041 17.3 0.0 0.45 10.7 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|435850931|ref|YP_007312517.1| - 0.0066 16.1 0.0 2.1 7.9 0.0 3.0 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|435850931|ref|YP_007312517.1| - 0.012 15.4 0.0 1.9 8.3 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain DNA_pol3_delta2 PF13177.6 gi|435850931|ref|YP_007312517.1| - 0.014 15.1 0.0 0.19 11.5 0.0 2.7 2 1 0 2 2 2 0 DNA polymerase III, delta subunit PduV-EutP PF10662.9 gi|435850931|ref|YP_007312517.1| - 0.016 14.9 0.0 2.6 7.8 0.0 2.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.6 gi|435850931|ref|YP_007312517.1| - 0.02 14.6 0.0 8.8 6.0 0.0 2.6 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|435850931|ref|YP_007312517.1| - 0.021 14.8 0.0 5.1 7.0 0.0 2.9 2 0 0 2 2 2 0 NTPase SRP54 PF00448.22 gi|435850931|ref|YP_007312517.1| - 0.021 14.5 0.2 7.7 6.1 0.0 2.7 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain Ras PF00071.22 gi|435850931|ref|YP_007312517.1| - 0.033 13.8 0.0 11 5.6 0.0 3.3 3 0 0 3 3 2 0 Ras family AAA_6 PF12774.7 gi|435850931|ref|YP_007312517.1| - 0.058 12.4 0.0 3.1 6.7 0.0 2.4 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region CbiA PF01656.23 gi|435850931|ref|YP_007312517.1| - 0.063 13.3 0.0 16 5.6 0.0 3.0 2 2 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.6 gi|435850931|ref|YP_007312517.1| - 0.063 13.6 0.7 2 8.8 0.2 3.1 3 1 0 3 3 2 0 AAA domain MMR_HSR1 PF01926.23 gi|435850931|ref|YP_007312517.1| - 0.09 12.9 0.0 26 4.9 0.0 3.6 2 1 0 2 2 2 0 50S ribosome-binding GTPase KELK PF15796.5 gi|435850931|ref|YP_007312517.1| - 0.22 12.0 13.2 3.2 8.3 12.1 3.3 3 0 0 3 3 2 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase AAA_13 PF13166.6 gi|435850931|ref|YP_007312517.1| - 0.22 10.1 9.5 0.42 9.2 9.5 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|435850931|ref|YP_007312517.1| - 0.3 10.8 6.2 8.2 6.0 5.8 2.9 2 1 0 2 2 2 0 AAA ATPase domain Occludin_ELL PF07303.13 gi|435850931|ref|YP_007312517.1| - 1.3 9.8 7.4 3.3 8.5 4.9 2.7 2 0 0 2 2 2 0 Occludin homology domain DUF5446 PF17522.2 gi|435850931|ref|YP_007312517.1| - 4.6 7.5 10.1 2.5 8.3 3.5 3.6 3 0 0 3 3 2 0 Family of unknown function (DUF5446) HSP20 PF00011.21 gi|435850932|ref|YP_007312518.1| - 5.8e-21 74.5 0.5 7e-21 74.3 0.5 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|435850932|ref|YP_007312518.1| - 2.1e-11 43.2 0.0 3.2e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|435850932|ref|YP_007312518.1| - 0.006 16.7 0.2 0.0082 16.2 0.2 1.2 1 0 0 1 1 1 1 GvpH CS PF04969.16 gi|435850932|ref|YP_007312518.1| - 0.034 15.2 0.1 0.05 14.6 0.1 1.3 1 0 0 1 1 1 0 CS domain DUF4860 PF16152.5 gi|435850932|ref|YP_007312518.1| - 0.038 13.8 0.2 0.054 13.4 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4860) Cpn60_TCP1 PF00118.24 gi|435850933|ref|YP_007312519.1| - 2.4e-96 323.3 22.1 7e-96 321.8 22.1 1.6 1 1 0 1 1 1 1 TCP-1/cpn60 chaperonin family Cpn10 PF00166.21 gi|435850934|ref|YP_007312520.1| - 1.1e-25 89.5 0.8 1.2e-25 89.4 0.8 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit HTH_20 PF12840.7 gi|435850935|ref|YP_007312521.1| - 2e-07 31.0 0.5 1.2e-06 28.5 0.3 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|435850935|ref|YP_007312521.1| - 7.3e-06 25.5 0.1 1.7e-05 24.3 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|435850935|ref|YP_007312521.1| - 8.7e-05 22.3 0.0 0.00021 21.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|435850935|ref|YP_007312521.1| - 0.00013 21.8 0.1 0.00025 20.9 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|435850935|ref|YP_007312521.1| - 0.0014 18.6 0.2 0.0022 17.9 0.2 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|435850935|ref|YP_007312521.1| - 0.0033 17.3 0.1 0.0077 16.1 0.1 1.6 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 gi|435850935|ref|YP_007312521.1| - 0.0042 17.4 0.1 0.0073 16.6 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator EAP30 PF04157.16 gi|435850935|ref|YP_007312521.1| - 0.0063 15.8 0.3 0.0092 15.3 0.0 1.4 2 0 0 2 2 2 1 EAP30/Vps36 family HTH_15 PF12324.8 gi|435850935|ref|YP_007312521.1| - 0.0092 15.9 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of alkylmercury lyase HTH_Crp_2 PF13545.6 gi|435850935|ref|YP_007312521.1| - 0.026 14.5 0.2 0.036 14.0 0.2 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RPA_C PF08784.11 gi|435850935|ref|YP_007312521.1| - 0.026 15.2 0.0 0.043 14.5 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal TFIIE_alpha PF02002.17 gi|435850935|ref|YP_007312521.1| - 0.036 13.9 0.4 0.036 13.9 0.4 1.6 2 0 0 2 2 2 0 TFIIE alpha subunit DUF2250 PF10007.9 gi|435850935|ref|YP_007312521.1| - 0.065 13.3 0.1 0.12 12.5 0.1 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MoaE PF02391.17 gi|435850936|ref|YP_007312522.1| - 1.8e-26 92.6 0.2 3.1e-26 91.9 0.2 1.4 1 0 0 1 1 1 1 MoaE protein MobB PF03205.14 gi|435850936|ref|YP_007312522.1| - 2.9e-19 69.3 0.2 5.4e-19 68.4 0.2 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.6 gi|435850936|ref|YP_007312522.1| - 0.0094 16.3 0.3 0.053 13.9 0.1 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|435850936|ref|YP_007312522.1| - 0.017 15.1 0.4 0.057 13.5 0.1 2.1 1 1 1 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|435850936|ref|YP_007312522.1| - 0.057 13.5 0.3 0.14 12.3 0.1 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase SRPRB PF09439.10 gi|435850936|ref|YP_007312522.1| - 0.08 12.4 0.1 0.38 10.2 0.1 2.0 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Roc PF08477.13 gi|435850936|ref|YP_007312522.1| - 0.082 13.1 0.9 0.34 11.1 0.9 2.0 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_33 PF13671.6 gi|435850936|ref|YP_007312522.1| - 0.14 12.3 0.1 0.3 11.2 0.1 1.6 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|435850936|ref|YP_007312522.1| - 0.16 12.0 0.0 22 5.1 0.0 2.3 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.6 gi|435850936|ref|YP_007312522.1| - 0.37 11.0 2.1 0.7 10.2 0.1 2.3 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.15 gi|435850936|ref|YP_007312522.1| - 1.4 8.8 4.6 3.4 7.5 1.6 2.2 2 0 0 2 2 2 0 NTPase RadC PF04002.15 gi|435850937|ref|YP_007312523.1| - 2.3e-45 153.5 0.0 3.4e-45 152.9 0.0 1.3 1 0 0 1 1 1 1 RadC-like JAB domain Prok-JAB PF14464.6 gi|435850937|ref|YP_007312523.1| - 0.0025 17.6 0.0 0.0047 16.7 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain HHH_2 PF12826.7 gi|435850937|ref|YP_007312523.1| - 0.0033 17.5 0.0 0.0063 16.6 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HhH-GPD PF00730.25 gi|435850937|ref|YP_007312523.1| - 0.024 15.1 0.1 0.038 14.5 0.1 1.4 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein HHH_3 PF12836.7 gi|435850937|ref|YP_007312523.1| - 0.11 12.7 0.1 0.23 11.7 0.1 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|435850937|ref|YP_007312523.1| - 0.14 12.0 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda DUF1743 PF08489.11 gi|435850938|ref|YP_007312524.1| - 2e-09 37.5 0.0 2.5e-05 24.3 0.0 3.7 2 1 1 3 3 3 2 Domain of unknown function (DUF1743) YorP PF09629.10 gi|435850938|ref|YP_007312524.1| - 0.0077 16.4 0.0 0.02 15.1 0.0 1.7 1 0 0 1 1 1 1 YorP protein TPP_enzyme_C PF02775.21 gi|435850939|ref|YP_007312525.1| - 7.1e-10 38.9 0.6 3.2e-09 36.7 0.1 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|435850939|ref|YP_007312525.1| - 1.1e-06 28.6 0.2 2.4e-06 27.5 0.2 1.5 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transket_pyr PF02779.24 gi|435850939|ref|YP_007312525.1| - 0.053 13.2 0.0 0.12 12.1 0.0 1.6 1 1 0 1 1 1 0 Transketolase, pyrimidine binding domain tRNA_int_endo PF01974.17 gi|435850940|ref|YP_007312526.1| - 2.1e-49 165.5 2.2 2.2e-25 88.5 0.7 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|435850940|ref|YP_007312526.1| - 6.1e-38 128.3 2.7 9.3e-18 63.7 0.0 3.0 3 1 0 3 3 3 2 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.10 gi|435850940|ref|YP_007312526.1| - 0.013 15.8 0.0 0.027 14.7 0.0 1.6 1 0 0 1 1 1 0 Sen15 protein DUF2209 PF09974.9 gi|435850941|ref|YP_007312527.1| - 6.5e-53 178.2 0.2 7.9e-53 177.9 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) CAS_CSE1 PF03378.15 gi|435850941|ref|YP_007312527.1| - 0.039 12.5 0.0 0.05 12.1 0.0 1.2 1 0 0 1 1 1 0 CAS/CSE protein, C-terminus GTP-bdg_N PF13167.6 gi|435850942|ref|YP_007312528.1| - 3e-24 85.5 0.5 9.7e-24 83.9 0.1 2.1 2 0 0 2 2 2 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|435850942|ref|YP_007312528.1| - 3.2e-21 75.6 0.0 6.1e-21 74.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|435850942|ref|YP_007312528.1| - 4.5e-15 56.0 0.6 7.7e-15 55.3 0.6 1.4 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region RsgA_GTPase PF03193.16 gi|435850942|ref|YP_007312528.1| - 1.1e-07 32.0 0.0 0.01 15.7 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase FeoB_N PF02421.18 gi|435850942|ref|YP_007312528.1| - 1.2e-07 31.4 0.2 3.1e-07 30.1 0.2 1.7 1 1 0 1 1 1 1 Ferrous iron transport protein B cobW PF02492.19 gi|435850942|ref|YP_007312528.1| - 1.7e-06 27.8 0.7 0.00018 21.2 0.3 2.5 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1_Xtn PF16897.5 gi|435850942|ref|YP_007312528.1| - 4.7e-05 23.3 0.0 0.00013 21.9 0.0 1.8 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain GTP_EFTU PF00009.27 gi|435850942|ref|YP_007312528.1| - 0.00017 21.2 0.1 0.029 13.9 0.0 2.4 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|435850942|ref|YP_007312528.1| - 0.0016 18.5 0.0 0.012 15.7 0.0 2.1 1 1 1 2 2 2 1 Dynamin family Arf PF00025.21 gi|435850942|ref|YP_007312528.1| - 0.011 15.2 0.5 0.036 13.5 0.5 1.8 1 1 0 1 1 1 0 ADP-ribosylation factor family ABC_tran PF00005.27 gi|435850942|ref|YP_007312528.1| - 0.05 14.1 0.0 0.28 11.7 0.0 2.1 2 0 0 2 2 2 0 ABC transporter AAA_29 PF13555.6 gi|435850942|ref|YP_007312528.1| - 0.082 12.7 0.0 0.2 11.5 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Roc PF08477.13 gi|435850942|ref|YP_007312528.1| - 0.13 12.4 0.1 5 7.4 0.0 2.3 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase PHP_C PF13263.6 gi|435850943|ref|YP_007312529.1| - 2e-16 59.5 0.0 4.2e-16 58.4 0.0 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|435850943|ref|YP_007312529.1| - 2.2e-08 34.6 0.0 6.4e-08 33.1 0.0 1.9 1 1 0 1 1 1 1 PHP domain Dynactin PF12455.8 gi|435850943|ref|YP_007312529.1| - 0.12 11.6 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 Dynein associated protein DUF447 PF04289.12 gi|435850944|ref|YP_007312530.1| - 3.1e-54 183.4 0.1 3.5e-54 183.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) CitG PF01874.16 gi|435850945|ref|YP_007312531.1| - 7.7e-75 252.1 0.0 8.9e-75 251.9 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Sigma54_CBD PF04963.13 gi|435850945|ref|YP_007312531.1| - 0.047 13.5 0.0 3.1 7.6 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 factor, core binding domain Dus PF01207.17 gi|435850946|ref|YP_007312532.1| - 1.5e-14 53.8 0.8 2.1e-14 53.3 0.8 1.2 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) IMPDH PF00478.25 gi|435850946|ref|YP_007312532.1| - 7.6e-10 38.3 3.1 1.1e-09 37.8 3.1 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.21 gi|435850946|ref|YP_007312532.1| - 1.1e-07 31.5 0.7 2.4e-07 30.5 0.4 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein NMO PF03060.15 gi|435850946|ref|YP_007312532.1| - 0.0087 15.5 4.5 0.053 12.9 4.5 2.0 1 1 0 1 1 1 1 Nitronate monooxygenase Glu_synthase PF01645.17 gi|435850946|ref|YP_007312532.1| - 0.011 14.9 2.5 0.036 13.2 0.6 2.0 2 0 0 2 2 2 0 Conserved region in glutamate synthase Aldolase PF01081.19 gi|435850946|ref|YP_007312532.1| - 0.03 13.8 1.7 0.074 12.5 1.4 1.8 2 0 0 2 2 2 0 KDPG and KHG aldolase Oxidored_FMN PF00724.20 gi|435850946|ref|YP_007312532.1| - 0.05 12.9 0.2 0.13 11.5 0.1 1.7 2 0 0 2 2 2 0 NADH:flavin oxidoreductase / NADH oxidase family PP_kinase_C_1 PF17941.1 gi|435850946|ref|YP_007312532.1| - 0.14 11.7 1.2 0.72 9.4 0.1 2.1 2 0 0 2 2 2 0 Polyphosphate kinase C-terminal domain 1 YhfH PF14149.6 gi|435850947|ref|YP_007312533.1| - 0.12 12.4 0.3 0.12 12.4 0.3 2.1 1 1 1 2 2 2 0 YhfH-like protein DUF2256 PF10013.9 gi|435850947|ref|YP_007312533.1| - 0.13 12.4 0.6 0.13 12.4 0.6 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-NADH-PPase PF09297.11 gi|435850947|ref|YP_007312533.1| - 0.21 11.3 1.7 0.44 10.2 0.1 2.1 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.6 gi|435850947|ref|YP_007312533.1| - 0.21 11.5 0.1 0.21 11.5 0.1 2.3 3 1 0 3 3 3 0 Nudix N-terminal ELFV_dehydrog PF00208.21 gi|435850948|ref|YP_007312534.1| - 3e-74 249.8 2.0 3.6e-74 249.6 1.2 1.5 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|435850948|ref|YP_007312534.1| - 1.3e-55 186.8 0.0 2.4e-55 186.0 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|435850948|ref|YP_007312534.1| - 0.0042 16.5 0.2 0.0076 15.6 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|435850949|ref|YP_007312535.1| - 1.2e-19 70.7 0.6 2.4e-19 69.7 0.6 1.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|435850949|ref|YP_007312535.1| - 7.7e-06 25.6 0.1 1.2e-05 25.0 0.1 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|435850949|ref|YP_007312535.1| - 0.00027 21.2 0.4 0.0007 19.9 0.4 1.8 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_Gly3P_dh_N PF01210.23 gi|435850949|ref|YP_007312535.1| - 0.0013 18.8 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Semialdhyde_dh PF01118.24 gi|435850949|ref|YP_007312535.1| - 0.0064 16.9 0.1 0.011 16.1 0.1 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|435850949|ref|YP_007312535.1| - 0.043 13.3 0.1 0.056 12.9 0.1 1.1 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family PPDK_N PF01326.19 gi|435850950|ref|YP_007312536.1| - 1.5e-49 169.0 0.0 5.5e-49 167.2 0.0 1.8 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Glu_synthase PF01645.17 gi|435850951|ref|YP_007312537.1| - 5e-12 45.6 0.0 1e-10 41.3 0.0 2.1 1 1 0 1 1 1 1 Conserved region in glutamate synthase EpsG PF14897.6 gi|435850952|ref|YP_007312538.1| - 7.6e-05 22.2 73.7 0.00024 20.5 47.7 2.6 3 0 0 3 3 3 2 EpsG family PMT_2 PF13231.6 gi|435850952|ref|YP_007312538.1| - 0.0011 19.2 19.4 0.0011 19.2 19.4 5.0 3 2 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_trans_1_4 PF13692.6 gi|435850953|ref|YP_007312539.1| - 1.4e-13 51.4 0.0 2.2e-13 50.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|435850953|ref|YP_007312539.1| - 1.2e-11 44.4 0.0 2.9e-11 43.2 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|435850953|ref|YP_007312539.1| - 7.6e-09 35.8 0.0 1.3e-08 35.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|435850953|ref|YP_007312539.1| - 4.6e-06 26.9 0.0 8.9e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|435850953|ref|YP_007312539.1| - 0.02 15.4 0.0 0.027 14.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain B12-binding_2 PF02607.17 gi|435850954|ref|YP_007312540.1| - 7.4e-12 45.5 0.0 9.1e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 B12 binding domain URO-D PF01208.17 gi|435850955|ref|YP_007312541.1| - 4.8e-83 279.2 0.0 5.4e-83 279.0 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) WHIM1 PF15612.6 gi|435850955|ref|YP_007312541.1| - 0.091 12.3 0.0 0.23 11.0 0.0 1.7 1 0 0 1 1 1 0 WSTF, HB1, Itc1p, MBD9 motif 1 DDE_Tnp_1 PF01609.21 gi|435850956|ref|YP_007312542.1| - 1.2e-10 41.4 0.9 2.4e-10 40.4 0.9 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|435850956|ref|YP_007312542.1| - 0.00092 19.2 0.0 0.0026 17.7 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) Phe_ZIP PF08916.11 gi|435850957|ref|YP_007312543.1| - 0.028 15.1 0.1 0.056 14.2 0.1 1.5 1 0 0 1 1 1 0 Phenylalanine zipper TrkA_N PF02254.18 gi|435850957|ref|YP_007312543.1| - 0.072 13.4 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain DAO PF01266.24 gi|435850957|ref|YP_007312543.1| - 0.18 11.4 0.0 0.48 10.0 0.0 1.6 2 1 0 2 2 2 0 FAD dependent oxidoreductase TM_helix PF05552.12 gi|435850958|ref|YP_007312544.1| - 2e-24 85.3 47.1 3.4e-11 42.9 4.4 4.7 5 0 0 5 5 5 3 Conserved TM helix DDDD PF10161.9 gi|435850958|ref|YP_007312544.1| - 0.23 11.2 5.5 0.24 11.2 0.4 3.0 2 0 0 2 2 2 0 Putative mitochondrial precursor protein Aminotran_1_2 PF00155.21 gi|435850959|ref|YP_007312545.1| - 2.4e-61 207.9 0.0 2.7e-61 207.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|435850959|ref|YP_007312545.1| - 3e-09 36.7 0.0 4.7e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|435850959|ref|YP_007312545.1| - 2.1e-08 33.1 0.0 5e-08 31.9 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|435850959|ref|YP_007312545.1| - 1.5e-05 24.1 0.0 2.6e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|435850959|ref|YP_007312545.1| - 0.00017 21.0 0.0 0.00027 20.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Fe_dep_repress PF01325.19 gi|435850960|ref|YP_007312546.1| - 6.7e-19 67.8 1.3 9.6e-19 67.3 1.3 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|435850960|ref|YP_007312546.1| - 2.9e-17 62.5 0.4 6.6e-17 61.4 0.4 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_24 PF13412.6 gi|435850960|ref|YP_007312546.1| - 3.4e-05 23.3 0.0 5.4e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FeoC PF09012.10 gi|435850960|ref|YP_007312546.1| - 0.00015 21.8 0.0 0.00024 21.1 0.0 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator LexA_DNA_bind PF01726.16 gi|435850960|ref|YP_007312546.1| - 0.0002 21.0 0.0 0.00031 20.4 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain MarR_2 PF12802.7 gi|435850960|ref|YP_007312546.1| - 0.0016 18.3 0.0 0.0026 17.6 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|435850960|ref|YP_007312546.1| - 0.0023 17.8 0.0 0.0057 16.6 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|435850960|ref|YP_007312546.1| - 0.0027 17.6 0.1 0.004 17.0 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_micro PF17007.5 gi|435850960|ref|YP_007312546.1| - 0.02 13.7 0.3 0.02 13.7 0.3 1.2 1 0 0 1 1 1 0 HTH-like HTH_5 PF01022.20 gi|435850960|ref|YP_007312546.1| - 0.027 14.3 0.0 0.042 13.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|435850960|ref|YP_007312546.1| - 0.047 13.5 0.0 0.086 12.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|435850960|ref|YP_007312546.1| - 0.049 14.0 0.1 0.072 13.4 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator ArsR PF09824.9 gi|435850960|ref|YP_007312546.1| - 0.05 13.2 0.1 0.075 12.6 0.1 1.2 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_27 PF13463.6 gi|435850960|ref|YP_007312546.1| - 0.15 12.6 0.0 0.25 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain FeoA PF04023.14 gi|435850961|ref|YP_007312547.1| - 1.8e-19 69.7 0.2 2e-19 69.6 0.2 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.18 gi|435850962|ref|YP_007312548.1| - 9.7e-66 220.1 0.8 1.5e-65 219.5 0.8 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|435850962|ref|YP_007312548.1| - 7e-43 145.5 18.4 1.5e-29 102.6 1.2 2.9 3 0 0 3 3 3 2 Nucleoside recognition FeoB_C PF07664.12 gi|435850962|ref|YP_007312548.1| - 1.1e-21 76.2 3.1 1.5e-20 72.6 0.1 3.2 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.23 gi|435850962|ref|YP_007312548.1| - 4e-18 65.5 0.1 7.4e-18 64.7 0.1 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|435850962|ref|YP_007312548.1| - 4.4e-14 52.8 0.2 8.7e-14 51.8 0.2 1.5 1 0 0 1 1 1 1 FeoB cytosolic helical domain SRPRB PF09439.10 gi|435850962|ref|YP_007312548.1| - 0.00048 19.6 0.0 0.00081 18.9 0.0 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AIG1 PF04548.16 gi|435850962|ref|YP_007312548.1| - 0.0093 15.3 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 AIG1 family NTPase_1 PF03266.15 gi|435850962|ref|YP_007312548.1| - 0.1 12.5 0.1 0.2 11.5 0.1 1.5 1 0 0 1 1 1 0 NTPase RsgA_GTPase PF03193.16 gi|435850962|ref|YP_007312548.1| - 0.15 12.0 0.8 5.3 6.9 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase DUF4199 PF13858.6 gi|435850963|ref|YP_007312549.1| - 1.9 8.8 13.8 1.8 8.9 12.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) HTH_24 PF13412.6 gi|435850964|ref|YP_007312550.1| - 9.4e-05 21.9 0.0 0.00016 21.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FeoC PF09012.10 gi|435850964|ref|YP_007312550.1| - 0.00024 21.1 0.4 0.00034 20.6 0.4 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator Sigma70_r4 PF04545.16 gi|435850964|ref|YP_007312550.1| - 0.0043 16.6 0.1 0.0067 15.9 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 FaeA PF04703.12 gi|435850964|ref|YP_007312550.1| - 0.019 15.3 0.1 0.029 14.7 0.1 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_45 PF14947.6 gi|435850964|ref|YP_007312550.1| - 0.026 14.5 0.8 0.85 9.6 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_Crp_2 PF13545.6 gi|435850964|ref|YP_007312550.1| - 0.04 13.9 0.0 0.053 13.5 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain FokI_C PF02980.16 gi|435850964|ref|YP_007312550.1| - 0.044 13.8 0.1 0.073 13.1 0.1 1.4 1 1 0 1 1 1 0 Restriction endonuclease FokI, catalytic domain HTH_27 PF13463.6 gi|435850964|ref|YP_007312550.1| - 0.099 13.2 0.0 2.6 8.6 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.12 gi|435850964|ref|YP_007312550.1| - 0.12 12.1 0.1 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 RACo_C_ter PF14574.6 gi|435850965|ref|YP_007312551.1| - 9e-72 241.2 0.9 3.2e-71 239.4 1.1 1.7 2 0 0 2 2 2 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|435850965|ref|YP_007312551.1| - 7.8e-11 41.9 0.1 6e-10 39.0 0.0 2.6 3 1 0 3 3 3 1 RACo middle region Fer4 PF00037.27 gi|435850965|ref|YP_007312551.1| - 2.9e-05 23.7 11.0 0.0014 18.4 4.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435850965|ref|YP_007312551.1| - 3.9e-05 24.1 9.3 8.6e-05 23.0 9.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435850965|ref|YP_007312551.1| - 5e-05 23.2 15.3 0.015 15.4 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435850965|ref|YP_007312551.1| - 6e-05 23.1 11.0 0.0003 20.9 11.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435850965|ref|YP_007312551.1| - 0.00015 21.8 10.9 0.0003 20.8 10.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435850965|ref|YP_007312551.1| - 0.00023 22.1 14.7 0.00048 21.0 3.1 2.7 2 1 1 3 3 2 2 4Fe-4S double cluster binding domain Fer4_11 PF13247.6 gi|435850965|ref|YP_007312551.1| - 0.00077 19.6 5.0 0.0016 18.5 5.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435850965|ref|YP_007312551.1| - 0.0041 17.2 14.0 0.018 15.1 14.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435850965|ref|YP_007312551.1| - 0.03 14.4 13.7 0.52 10.5 3.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain PepSY_2 PF13670.6 gi|435850965|ref|YP_007312551.1| - 0.14 12.2 0.0 0.45 10.5 0.0 1.9 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain Fer4_8 PF13183.6 gi|435850965|ref|YP_007312551.1| - 0.23 11.9 6.1 0.52 10.8 0.2 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435850965|ref|YP_007312551.1| - 0.83 10.7 14.5 5.4 8.2 3.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|435850965|ref|YP_007312551.1| - 0.9 9.8 11.4 3.3 7.9 11.4 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435850965|ref|YP_007312551.1| - 0.92 10.2 15.7 1.9 9.2 2.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain cobW PF02492.19 gi|435850966|ref|YP_007312552.1| - 2.6e-35 121.6 0.7 4.8e-35 120.7 0.7 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain RNase_E_G PF10150.9 gi|435850966|ref|YP_007312552.1| - 0.0035 16.8 1.2 0.98 8.8 0.0 2.1 2 0 0 2 2 2 2 Ribonuclease E/G family MeaB PF03308.16 gi|435850966|ref|YP_007312552.1| - 0.0099 14.9 0.8 0.019 14.0 0.8 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|435850966|ref|YP_007312552.1| - 0.04 13.6 1.0 0.077 12.6 0.3 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain CbiA PF01656.23 gi|435850966|ref|YP_007312552.1| - 0.19 11.8 3.4 1.5 8.9 2.5 2.6 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|435850966|ref|YP_007312552.1| - 0.47 10.3 2.8 0.36 10.7 0.2 2.2 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B B12-binding PF02310.19 gi|435850967|ref|YP_007312553.1| - 3.4e-19 69.1 0.6 6.1e-19 68.2 0.6 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|435850967|ref|YP_007312553.1| - 6.9e-18 64.9 1.2 1.9e-17 63.5 0.1 2.2 2 1 0 2 2 2 1 B12 binding domain UPF0180 PF03698.13 gi|435850967|ref|YP_007312553.1| - 0.11 12.7 0.0 0.26 11.5 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) DNA_pol3_gamma3 PF12169.8 gi|435850967|ref|YP_007312553.1| - 0.12 12.3 0.0 0.28 11.1 0.0 1.6 1 0 0 1 1 1 0 DNA polymerase III subunits gamma and tau domain III MtaB PF12176.8 gi|435850968|ref|YP_007312554.1| - 1.7e-224 745.8 3.2 1.9e-224 745.6 3.2 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit KH_10 PF17905.1 gi|435850968|ref|YP_007312554.1| - 0.14 12.6 0.1 0.26 11.7 0.1 1.4 1 0 0 1 1 1 0 GLD-3 KH domain 5 URO-D PF01208.17 gi|435850969|ref|YP_007312555.1| - 2e-87 293.5 2.3 2.3e-87 293.4 2.3 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_2 PF01717.18 gi|435850969|ref|YP_007312555.1| - 0.1 11.9 0.1 0.16 11.2 0.1 1.3 1 0 0 1 1 1 0 Cobalamin-independent synthase, Catalytic domain DEAD_assoc PF08494.11 gi|435850970|ref|YP_007312556.1| - 7.6e-34 117.2 0.0 2.1e-33 115.8 0.0 1.7 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|435850970|ref|YP_007312556.1| - 1.4e-28 99.8 0.0 3.9e-28 98.4 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|435850970|ref|YP_007312556.1| - 6.3e-24 84.5 0.3 1.5e-20 73.5 0.1 3.7 3 1 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|435850970|ref|YP_007312556.1| - 1.1e-06 28.8 0.0 2.1e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit T4SS-DNA_transf PF02534.14 gi|435850970|ref|YP_007312556.1| - 0.016 14.1 0.0 0.15 10.8 0.0 2.1 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer AAA_25 PF13481.6 gi|435850970|ref|YP_007312556.1| - 0.067 12.8 0.1 0.27 10.8 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|435850970|ref|YP_007312556.1| - 0.092 13.0 0.1 0.8 10.0 0.1 2.3 1 1 0 1 1 1 0 AAA domain PGM_PMM_I PF02878.16 gi|435850970|ref|YP_007312556.1| - 0.12 12.1 0.1 0.33 10.6 0.0 1.8 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ANAPC2 PF08672.11 gi|435850970|ref|YP_007312556.1| - 0.12 12.9 0.0 0.49 11.0 0.0 2.1 1 0 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 Metallophos_2 PF12850.7 gi|435850971|ref|YP_007312557.1| - 0.00012 22.3 0.0 0.0002 21.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DNA_pol_E_B PF04042.16 gi|435850971|ref|YP_007312557.1| - 0.14 11.5 0.0 0.42 9.9 0.0 1.8 1 1 0 1 1 1 0 DNA polymerase alpha/epsilon subunit B Ependymin PF00811.18 gi|435850971|ref|YP_007312557.1| - 0.25 11.6 0.0 0.44 10.8 0.0 1.3 1 0 0 1 1 1 0 Ependymin DS PF01916.17 gi|435850972|ref|YP_007312558.1| - 4.6e-101 337.9 0.4 5.2e-101 337.7 0.4 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase OMPdecase PF00215.24 gi|435850973|ref|YP_007312559.1| - 1.1e-40 139.6 2.7 1.4e-40 139.3 2.7 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|435850973|ref|YP_007312559.1| - 0.024 14.0 1.7 0.057 12.8 1.7 1.7 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DHO_dh PF01180.21 gi|435850973|ref|YP_007312559.1| - 0.028 13.6 0.4 0.044 13.0 0.4 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase DUF3240 PF11582.8 gi|435850973|ref|YP_007312559.1| - 0.15 12.2 0.0 3.4 7.9 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3240) Ppx-GppA PF02541.16 gi|435850974|ref|YP_007312560.1| - 3.9e-36 125.0 0.0 8.5e-35 120.6 0.0 2.0 1 1 0 1 1 1 1 Ppx/GppA phosphatase family FtsA PF14450.6 gi|435850974|ref|YP_007312560.1| - 6.3e-05 23.3 0.1 0.0015 18.9 0.0 2.5 2 1 0 2 2 2 1 Cell division protein FtsA EutA PF06277.11 gi|435850974|ref|YP_007312560.1| - 0.014 14.3 0.1 0.037 12.9 0.1 1.6 1 1 1 2 2 2 0 Ethanolamine utilisation protein EutA MreB_Mbl PF06723.13 gi|435850974|ref|YP_007312560.1| - 0.034 13.0 0.0 0.046 12.5 0.0 1.3 1 0 0 1 1 1 0 MreB/Mbl protein PP_kinase_C PF13090.6 gi|435850975|ref|YP_007312561.1| - 7e-73 243.7 2.2 7e-73 243.7 2.2 2.0 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 PP_kinase_C_1 PF17941.1 gi|435850975|ref|YP_007312561.1| - 6.2e-68 227.6 0.6 6.2e-68 227.6 0.6 2.0 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 1 PP_kinase PF02503.17 gi|435850975|ref|YP_007312561.1| - 4.4e-52 176.6 1.0 8.4e-52 175.7 1.0 1.5 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 gi|435850975|ref|YP_007312561.1| - 7.6e-36 122.7 0.2 7.6e-36 122.7 0.2 2.2 2 0 0 2 2 2 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|435850975|ref|YP_007312561.1| - 5.2e-14 52.3 0.5 1.2e-06 28.5 0.1 2.9 2 1 0 2 2 2 2 PLD-like domain Ntox27 PF15531.6 gi|435850975|ref|YP_007312561.1| - 0.1 12.5 0.1 0.22 11.4 0.1 1.5 1 0 0 1 1 1 0 Bacterial toxin 27 CHAD PF05235.14 gi|435850976|ref|YP_007312562.1| - 1.4e-51 175.6 0.8 1.8e-51 175.3 0.8 1.1 1 0 0 1 1 1 1 CHAD domain MIX PF18529.1 gi|435850976|ref|YP_007312562.1| - 0.18 11.5 0.4 19 4.9 0.0 2.8 3 0 0 3 3 3 0 Mitochondrial membrane-anchored proteins DUF2157 PF09925.9 gi|435850976|ref|YP_007312562.1| - 0.25 11.1 1.4 0.48 10.2 1.4 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) DUF4010 PF13194.6 gi|435850977|ref|YP_007312563.1| - 4.4e-47 160.5 21.9 4.4e-47 160.5 21.9 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|435850977|ref|YP_007312563.1| - 4.6e-20 72.2 9.9 4.6e-20 72.2 9.9 3.6 2 1 1 3 3 3 1 MgtC family PPK2 PF03976.14 gi|435850978|ref|YP_007312564.1| - 4.7e-132 438.5 13.7 5e-85 284.6 7.3 2.0 2 0 0 2 2 2 2 Polyphosphate kinase 2 (PPK2) PP1 PF07430.11 gi|435850978|ref|YP_007312564.1| - 0.0069 16.4 4.6 0.38 10.8 0.3 3.4 3 1 0 3 3 3 2 Phloem filament protein PP1 cystatin-like domain BBP1_C PF15272.6 gi|435850978|ref|YP_007312564.1| - 0.014 15.2 0.1 0.014 15.2 0.1 3.2 4 1 0 4 4 4 0 Spindle pole body component BBP1, C-terminal vWA-TerF-like PF10138.9 gi|435850978|ref|YP_007312564.1| - 0.026 14.6 0.8 0.42 10.7 0.1 2.4 2 0 0 2 2 2 0 vWA found in TerF C terminus AAA_18 PF13238.6 gi|435850978|ref|YP_007312564.1| - 0.096 13.2 1.8 0.12 12.9 0.4 1.9 2 1 0 2 2 2 0 AAA domain CYTH PF01928.21 gi|435850979|ref|YP_007312565.1| - 1.7e-15 57.4 0.1 3.9e-15 56.2 0.1 1.6 1 0 0 1 1 1 1 CYTH domain HD PF01966.22 gi|435850979|ref|YP_007312565.1| - 1.6e-08 34.8 0.5 5e-08 33.2 0.5 1.8 1 0 0 1 1 1 1 HD domain DUF2730 PF10805.8 gi|435850979|ref|YP_007312565.1| - 0.19 11.8 1.9 0.31 11.2 0.2 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2730) PYC_OADA PF02436.18 gi|435850980|ref|YP_007312566.1| - 3.4e-58 196.7 0.1 6.3e-58 195.8 0.1 1.4 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|435850980|ref|YP_007312566.1| - 7.7e-47 160.0 0.1 1e-46 159.7 0.1 1.1 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|435850980|ref|YP_007312566.1| - 1e-17 63.7 2.8 1e-17 63.7 2.8 1.9 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|435850980|ref|YP_007312566.1| - 1.4e-08 34.4 0.0 0.0025 17.6 0.0 2.8 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.6 gi|435850980|ref|YP_007312566.1| - 6.3e-05 22.9 0.9 0.00036 20.5 0.6 2.3 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain NQRA PF05896.11 gi|435850980|ref|YP_007312566.1| - 0.0039 16.7 0.1 0.007 15.8 0.1 1.3 1 0 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) GCV_H PF01597.19 gi|435850980|ref|YP_007312566.1| - 0.044 13.7 1.1 0.62 10.0 0.2 2.5 1 1 1 2 2 2 0 Glycine cleavage H-protein ADH_zinc_N PF00107.26 gi|435850980|ref|YP_007312566.1| - 0.059 13.4 0.1 0.47 10.4 0.1 2.3 2 1 1 3 3 3 0 Zinc-binding dehydrogenase HlyD_3 PF13437.6 gi|435850980|ref|YP_007312566.1| - 0.075 13.7 0.0 0.73 10.6 0.0 2.4 2 0 0 2 2 2 0 HlyD family secretion protein HlyD_D23 PF16576.5 gi|435850980|ref|YP_007312566.1| - 0.079 12.2 0.1 5.2 6.2 0.0 2.3 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion CPSase_L_D2 PF02786.17 gi|435850981|ref|YP_007312567.1| - 1.6e-79 266.3 0.3 3.4e-79 265.2 0.3 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|435850981|ref|YP_007312567.1| - 3.2e-47 159.6 0.1 1.1e-46 157.8 0.1 2.0 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|435850981|ref|YP_007312567.1| - 9.9e-43 144.6 0.0 2.4e-42 143.4 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|435850981|ref|YP_007312567.1| - 6.4e-12 45.4 0.1 1.6e-11 44.2 0.1 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|435850981|ref|YP_007312567.1| - 1e-05 25.6 0.1 2.2e-05 24.5 0.1 1.6 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|435850981|ref|YP_007312567.1| - 1.5e-05 24.9 0.1 3e-05 23.9 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.22 gi|435850981|ref|YP_007312567.1| - 0.00023 20.8 0.1 0.00045 19.8 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|435850981|ref|YP_007312567.1| - 0.0012 18.4 0.0 0.0024 17.5 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|435850981|ref|YP_007312567.1| - 0.0017 17.8 0.0 0.0038 16.7 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Bacteriocin_II PF01721.18 gi|435850981|ref|YP_007312567.1| - 0.095 12.8 0.0 0.26 11.4 0.0 1.7 1 0 0 1 1 1 0 Class II bacteriocin BPL_LplA_LipB PF03099.19 gi|435850982|ref|YP_007312568.1| - 1.6e-19 70.1 0.0 2.8e-19 69.3 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|435850982|ref|YP_007312568.1| - 2.4e-17 62.6 0.1 4.9e-17 61.6 0.1 1.6 1 0 0 1 1 1 1 HTH domain BPL_LplA_LipB_2 PF16917.5 gi|435850982|ref|YP_007312568.1| - 6.1e-09 35.7 0.0 9.9e-09 35.0 0.0 1.4 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|435850982|ref|YP_007312568.1| - 1.2e-06 28.3 0.0 2.9e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.6 gi|435850982|ref|YP_007312568.1| - 7.6e-05 22.2 0.1 0.00027 20.4 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|435850982|ref|YP_007312568.1| - 0.021 15.0 0.0 0.048 13.9 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|435850982|ref|YP_007312568.1| - 0.047 14.0 0.0 0.13 12.6 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_23 PF13384.6 gi|435850982|ref|YP_007312568.1| - 0.1 12.5 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|435850982|ref|YP_007312568.1| - 0.11 12.5 0.0 0.27 11.3 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|435850982|ref|YP_007312568.1| - 0.13 12.2 0.0 0.31 11.0 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|435850982|ref|YP_007312568.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_r4 PF04545.16 gi|435850982|ref|YP_007312568.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|435850982|ref|YP_007312568.1| - 0.14 12.1 0.0 0.33 10.8 0.0 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain S-layer PF07752.11 gi|435850983|ref|YP_007312569.1| - 3.2e-12 46.0 0.2 4.3e-12 45.7 0.2 1.1 1 0 0 1 1 1 1 S-layer protein SKG6 PF08693.10 gi|435850983|ref|YP_007312569.1| - 0.031 13.7 0.4 0.031 13.7 0.4 1.9 2 0 0 2 2 2 0 Transmembrane alpha-helix domain Spc7 PF08317.11 gi|435850984|ref|YP_007312570.1| - 1.9e-05 23.7 27.0 2.7e-05 23.2 7.6 2.1 2 0 0 2 2 2 2 Spc7 kinetochore protein DUF3450 PF11932.8 gi|435850984|ref|YP_007312570.1| - 0.00024 20.5 17.8 0.0031 16.8 5.8 3.0 1 1 2 3 3 3 3 Protein of unknown function (DUF3450) Seryl_tRNA_N PF02403.22 gi|435850984|ref|YP_007312570.1| - 0.00076 19.7 28.1 0.063 13.5 9.3 4.4 2 2 2 4 4 4 2 Seryl-tRNA synthetase N-terminal domain GAS PF13851.6 gi|435850984|ref|YP_007312570.1| - 0.00094 18.6 11.2 0.00094 18.6 11.2 2.7 2 1 1 3 3 3 1 Growth-arrest specific micro-tubule binding DUF724 PF05266.14 gi|435850984|ref|YP_007312570.1| - 0.0014 18.5 8.0 0.0014 18.5 8.0 3.0 2 1 1 3 3 3 1 Protein of unknown function (DUF724) DUF4527 PF15030.6 gi|435850984|ref|YP_007312570.1| - 0.0057 16.1 6.9 0.0057 16.1 6.9 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF4527) Mce4_CUP1 PF11887.8 gi|435850984|ref|YP_007312570.1| - 0.013 15.0 0.8 0.34 10.3 0.1 2.1 2 0 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative DUF2443 PF10398.9 gi|435850984|ref|YP_007312570.1| - 0.036 14.1 8.4 0.043 13.9 0.0 4.3 4 2 1 5 5 5 0 Protein of unknown function (DUF2443) DUF948 PF06103.11 gi|435850984|ref|YP_007312570.1| - 0.079 13.2 9.3 8.4 6.7 2.0 3.7 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) MAD PF05557.13 gi|435850984|ref|YP_007312570.1| - 0.2 10.0 30.3 0.27 9.5 8.3 2.3 2 1 0 2 2 2 0 Mitotic checkpoint protein TetR_C_24 PF17932.1 gi|435850984|ref|YP_007312570.1| - 0.47 10.7 2.8 0.76 10.1 1.0 2.2 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Fez1 PF06818.15 gi|435850984|ref|YP_007312570.1| - 0.66 10.4 28.3 4.8 7.6 8.7 2.6 1 1 1 2 2 2 0 Fez1 YtxH PF12732.7 gi|435850984|ref|YP_007312570.1| - 0.99 10.0 14.7 7.5 7.2 0.3 4.3 3 2 0 3 3 3 0 YtxH-like protein Laminin_II PF06009.12 gi|435850984|ref|YP_007312570.1| - 1.9 8.5 21.8 0.91 9.5 8.8 3.4 1 1 2 3 3 3 0 Laminin Domain II ATG16 PF08614.11 gi|435850984|ref|YP_007312570.1| - 2 8.6 27.0 1.2 9.4 5.7 3.1 2 2 0 2 2 2 0 Autophagy protein 16 (ATG16) ApoO PF09769.9 gi|435850984|ref|YP_007312570.1| - 2.1 8.3 7.2 9.5 6.2 0.1 3.1 3 1 0 3 3 3 0 Apolipoprotein O ZapB PF06005.12 gi|435850984|ref|YP_007312570.1| - 2.5 8.6 28.8 2.7 8.5 5.6 4.4 3 1 1 4 4 4 0 Cell division protein ZapB APG6_N PF17675.1 gi|435850984|ref|YP_007312570.1| - 5.7 7.5 32.1 1.1 9.8 2.4 3.8 1 1 3 4 4 4 0 Apg6 coiled-coil region DUF848 PF05852.11 gi|435850984|ref|YP_007312570.1| - 6.1 7.0 21.3 6.3 6.9 2.8 3.5 1 1 1 3 3 3 0 Gammaherpesvirus protein of unknown function (DUF848) NPV_P10 PF05531.12 gi|435850984|ref|YP_007312570.1| - 8.4 6.9 10.8 11 6.6 3.4 3.8 2 2 0 2 2 2 0 Nucleopolyhedrovirus P10 protein TMF_TATA_bd PF12325.8 gi|435850984|ref|YP_007312570.1| - 9.7 6.4 29.0 7.6 6.8 9.7 4.2 2 2 1 3 3 3 0 TATA element modulatory factor 1 TATA binding Uds1 PF15456.6 gi|435850985|ref|YP_007312571.1| - 0.0025 18.0 10.2 0.15 12.3 9.4 2.3 1 1 0 1 1 1 1 Up-regulated During Septation Seryl_tRNA_N PF02403.22 gi|435850985|ref|YP_007312571.1| - 0.011 16.0 0.8 0.011 16.0 0.8 3.1 2 2 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain PI3K_P85_iSH2 PF16454.5 gi|435850985|ref|YP_007312571.1| - 0.024 14.2 14.3 0.027 14.0 3.1 2.3 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain FlaC_arch PF05377.11 gi|435850985|ref|YP_007312571.1| - 0.07 13.5 0.4 0.07 13.5 0.4 2.9 4 0 0 4 4 4 0 Flagella accessory protein C (FlaC) PIN_2 PF10130.9 gi|435850985|ref|YP_007312571.1| - 0.13 12.5 9.5 1.3 9.3 0.9 2.2 1 1 1 2 2 2 0 PIN domain DNA_repr_REX1B PF14966.6 gi|435850985|ref|YP_007312571.1| - 0.21 12.3 4.1 2.2 9.0 0.1 2.7 1 1 2 3 3 3 0 DNA repair REX1-B Occludin_ELL PF07303.13 gi|435850985|ref|YP_007312571.1| - 0.25 12.1 7.4 0.13 13.0 1.1 2.3 2 0 0 2 2 2 0 Occludin homology domain Atg14 PF10186.9 gi|435850985|ref|YP_007312571.1| - 0.52 9.3 16.5 0.041 13.0 6.5 2.0 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 V_ATPase_I PF01496.19 gi|435850985|ref|YP_007312571.1| - 0.63 7.9 8.4 0.47 8.3 6.9 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family ZapB PF06005.12 gi|435850985|ref|YP_007312571.1| - 3.5 8.2 15.4 1.5 9.3 5.1 2.7 2 2 0 2 2 2 0 Cell division protein ZapB DUF424 PF04242.13 gi|435850986|ref|YP_007312572.1| - 2.3e-29 101.5 0.4 2.7e-29 101.3 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) MCM PF00493.23 gi|435850987|ref|YP_007312573.1| - 2.2e-96 321.3 0.0 3.3e-96 320.7 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|435850987|ref|YP_007312573.1| - 6.5e-37 126.2 0.2 1.2e-36 125.3 0.2 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|435850987|ref|YP_007312573.1| - 2.2e-26 92.1 1.6 3.4e-26 91.5 0.4 2.0 2 0 0 2 2 2 1 MCM AAA-lid domain MCM_N PF14551.6 gi|435850987|ref|YP_007312573.1| - 1.2e-09 38.7 0.3 5e-09 36.7 0.3 2.1 1 0 0 1 1 1 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|435850987|ref|YP_007312573.1| - 4.9e-07 29.4 0.1 0.00011 21.6 0.0 2.3 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|435850987|ref|YP_007312573.1| - 2.1e-06 27.8 0.0 7.5e-06 26.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|435850987|ref|YP_007312573.1| - 0.0017 18.2 0.0 0.0062 16.4 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|435850987|ref|YP_007312573.1| - 0.055 13.9 0.0 0.26 11.7 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|435850987|ref|YP_007312573.1| - 0.14 12.6 0.0 0.52 10.7 0.0 2.1 1 0 0 1 1 1 0 AAA ATPase domain AbiEi_4 PF13338.6 gi|435850987|ref|YP_007312573.1| - 0.17 12.1 0.0 0.81 9.9 0.0 2.2 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin SpoU_methylase PF00588.19 gi|435850988|ref|YP_007312574.1| - 3.8e-30 104.9 0.0 5.1e-30 104.5 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family DUF321 PF03778.13 gi|435850988|ref|YP_007312574.1| - 0.43 10.3 2.8 0.35 10.6 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF321) ACPS PF01648.20 gi|435850989|ref|YP_007312575.1| - 4.9e-05 23.4 0.0 0.00019 21.5 0.0 1.9 2 0 0 2 2 2 1 4'-phosphopantetheinyl transferase superfamily RIO1 PF01163.22 gi|435850990|ref|YP_007312576.1| - 1.1e-42 145.7 0.0 1.7e-42 145.1 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|435850990|ref|YP_007312576.1| - 4.2e-26 91.0 0.1 7.4e-26 90.2 0.1 1.4 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|435850990|ref|YP_007312576.1| - 0.00014 21.9 0.2 0.00038 20.5 0.2 1.6 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|435850990|ref|YP_007312576.1| - 0.0085 15.5 0.2 0.023 14.1 0.2 1.8 1 1 0 1 1 1 1 Protein kinase domain DUF460 PF04312.13 gi|435850991|ref|YP_007312577.1| - 4.3e-49 165.8 0.1 1.1e-48 164.5 0.1 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|435850991|ref|YP_007312577.1| - 0.0025 18.1 0.3 0.016 15.5 0.1 2.4 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor ThiG PF05690.14 gi|435850991|ref|YP_007312577.1| - 0.031 13.6 0.1 1.3 8.3 0.0 2.3 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG Hydrolase PF00702.26 gi|435850991|ref|YP_007312577.1| - 0.049 13.9 2.3 0.65 10.2 0.2 2.9 1 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase FAM76 PF16046.5 gi|435850991|ref|YP_007312577.1| - 0.72 9.1 9.3 1.5 8.1 9.3 1.5 1 0 0 1 1 1 0 FAM76 protein TMPIT PF07851.13 gi|435850991|ref|YP_007312577.1| - 7.1 5.8 8.5 13 4.9 8.5 1.4 1 0 0 1 1 1 0 TMPIT-like protein DUF2148 PF09918.9 gi|435850992|ref|YP_007312578.1| - 6.7e-29 99.7 0.9 1.2e-28 98.9 0.9 1.4 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.13 gi|435850992|ref|YP_007312578.1| - 0.0005 19.7 2.0 0.0013 18.3 2.0 1.7 1 0 0 1 1 1 1 Putative Fe-S cluster NTP_transf_3 PF12804.7 gi|435850993|ref|YP_007312579.1| - 2.4e-32 112.5 0.1 3e-32 112.2 0.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CofC PF01983.16 gi|435850993|ref|YP_007312579.1| - 0.00041 19.6 0.1 0.0012 18.1 0.1 1.7 1 1 0 1 1 1 1 Guanylyl transferase CofC like NTP_transferase PF00483.23 gi|435850993|ref|YP_007312579.1| - 0.0018 17.9 0.0 0.0024 17.5 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase DUF2064 PF09837.9 gi|435850993|ref|YP_007312579.1| - 0.038 13.8 0.1 0.062 13.1 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) DUF4800 PF16057.5 gi|435850993|ref|YP_007312579.1| - 0.1 11.9 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4800) HTH_Tnp_ISL3 PF13542.6 gi|435850994|ref|YP_007312580.1| - 0.037 13.4 0.0 0.16 11.4 0.0 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 DUF3562 PF12085.8 gi|435850994|ref|YP_007312580.1| - 0.16 11.6 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3562) DUF1638 PF07796.11 gi|435850995|ref|YP_007312581.1| - 1.4e-36 126.0 0.0 1.8e-36 125.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) Beta-Casp PF10996.8 gi|435850996|ref|YP_007312582.1| - 1.7e-13 50.8 0.0 3.4e-13 49.8 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|435850996|ref|YP_007312582.1| - 9.3e-09 35.1 0.0 2.9e-08 33.5 0.0 1.9 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|435850996|ref|YP_007312582.1| - 7.5e-08 32.0 0.0 1.8e-07 30.8 0.0 1.6 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|435850996|ref|YP_007312582.1| - 8.5e-05 22.2 0.0 0.00017 21.2 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|435850996|ref|YP_007312582.1| - 0.00058 19.9 0.6 0.0031 17.6 0.6 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Endopep_inhib PF16800.5 gi|435850996|ref|YP_007312582.1| - 0.14 12.1 0.1 0.28 11.1 0.1 1.4 1 0 0 1 1 1 0 IseA DL-endopeptidase inhibitor Topoisom_bac PF01131.20 gi|435850997|ref|YP_007312583.1| - 6.2e-124 414.1 1.3 1.2e-123 413.3 0.1 1.8 2 0 0 2 2 2 1 DNA topoisomerase Toprim PF01751.22 gi|435850997|ref|YP_007312583.1| - 4.8e-16 58.8 0.5 1.3e-15 57.4 0.5 1.8 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|435850997|ref|YP_007312583.1| - 4.7e-11 42.3 1.7 4.7e-11 42.3 1.7 2.1 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.6 gi|435850997|ref|YP_007312583.1| - 9e-06 26.2 2.6 1.5e-05 25.5 0.2 2.6 3 0 0 3 3 3 1 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|435850997|ref|YP_007312583.1| - 0.00015 22.0 0.0 0.00038 20.6 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.8 gi|435850997|ref|YP_007312583.1| - 0.0015 18.8 0.3 0.0057 16.9 0.1 2.1 2 0 0 2 2 2 1 IMS family HHH motif DNA_pol_lambd_f PF10391.9 gi|435850997|ref|YP_007312583.1| - 0.0017 18.2 0.0 0.012 15.4 0.0 2.4 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda UBA_6 PF18039.1 gi|435850997|ref|YP_007312583.1| - 0.16 11.9 0.1 3.4 7.7 0.0 2.6 2 0 0 2 2 2 0 UBA-like domain MerR PF00376.23 gi|435850997|ref|YP_007312583.1| - 0.24 11.2 0.7 1.3 8.9 0.0 2.6 3 0 0 3 3 3 0 MerR family regulatory protein FMN_red PF03358.15 gi|435850998|ref|YP_007312584.1| - 7.9e-29 100.4 0.0 1.1e-28 100.0 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|435850998|ref|YP_007312584.1| - 6.3e-16 58.7 0.0 1.4e-15 57.5 0.0 1.6 1 1 1 2 2 2 1 Flavodoxin-like fold DUF169 PF02596.15 gi|435850999|ref|YP_007312585.1| - 2.7e-38 132.0 0.0 3.5e-38 131.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 tRNA-synt_1c PF00749.21 gi|435851000|ref|YP_007312586.1| - 2.1e-61 207.6 0.0 2.7e-61 207.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|435851000|ref|YP_007312586.1| - 6.9e-28 97.7 0.0 1.1e-27 97.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain HTH_24 PF13412.6 gi|435851001|ref|YP_007312587.1| - 0.00039 19.9 0.1 0.00062 19.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|435851001|ref|YP_007312587.1| - 0.027 14.4 0.1 0.041 13.8 0.1 1.3 1 0 0 1 1 1 0 MarR family RepL PF05732.11 gi|435851001|ref|YP_007312587.1| - 0.029 13.8 0.0 0.049 13.1 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) FaeA PF04703.12 gi|435851001|ref|YP_007312587.1| - 0.032 14.6 0.0 0.047 14.1 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein TrmB PF01978.19 gi|435851001|ref|YP_007312587.1| - 0.04 13.8 0.1 0.054 13.4 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|435851001|ref|YP_007312587.1| - 0.042 14.2 0.0 0.055 13.8 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.20 gi|435851001|ref|YP_007312587.1| - 0.055 13.4 0.1 0.15 12.0 0.1 1.8 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family RNA_pol_Rpc34 PF05158.12 gi|435851001|ref|YP_007312587.1| - 0.069 12.5 0.1 0.089 12.1 0.1 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_12 PF08461.10 gi|435851001|ref|YP_007312587.1| - 0.07 13.1 0.1 0.15 12.0 0.1 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain FAA_hydrolase PF01557.18 gi|435851002|ref|YP_007312588.1| - 5.5e-70 235.4 0.0 6.4e-70 235.2 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Imm72 PF15584.6 gi|435851004|ref|YP_007312590.1| - 5.4e-06 26.5 0.7 0.86 9.8 0.0 3.4 3 0 0 3 3 3 2 Immunity protein 72 Y_Y_Y PF07495.13 gi|435851004|ref|YP_007312590.1| - 7e-05 22.7 6.8 0.35 10.9 0.1 3.4 3 0 0 3 3 3 2 Y_Y_Y domain DUF5640 PF18692.1 gi|435851004|ref|YP_007312590.1| - 7e-05 22.8 11.8 0.2 11.7 0.6 3.3 3 0 0 3 3 3 3 Family of unknown function (DUF5640) HicB-like_2 PF15970.5 gi|435851004|ref|YP_007312590.1| - 0.0012 18.9 0.0 5 7.4 0.0 3.4 3 0 0 3 3 3 1 HicB_like antitoxin of bacterial toxin-antitoxin system PK_C PF02887.16 gi|435851004|ref|YP_007312590.1| - 0.0025 18.0 0.0 5.3 7.3 0.0 3.5 2 2 1 3 3 3 1 Pyruvate kinase, alpha/beta domain Copper-bind PF00127.20 gi|435851004|ref|YP_007312590.1| - 0.0053 17.2 10.1 15 6.1 0.1 5.4 3 3 0 3 3 3 0 Copper binding proteins, plastocyanin/azurin family DUF4165 PF13752.6 gi|435851004|ref|YP_007312590.1| - 0.025 14.6 2.7 18 5.3 0.1 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4165) DUF4923 PF16270.5 gi|435851004|ref|YP_007312590.1| - 0.027 14.3 7.5 2.5 7.9 0.4 3.3 3 0 0 3 3 3 0 Lipocalin-like domain (DUF4923) SSI PF00720.17 gi|435851004|ref|YP_007312590.1| - 0.047 13.7 2.2 19 5.3 0.1 3.7 3 1 1 4 4 4 0 Subtilisin inhibitor-like Calici_MSP PF05752.11 gi|435851004|ref|YP_007312590.1| - 0.068 13.0 0.0 65 3.3 0.0 3.2 3 0 0 3 3 3 0 Calicivirus minor structural protein PKD PF00801.20 gi|435851004|ref|YP_007312590.1| - 0.073 12.9 5.0 20 5.1 0.3 3.5 3 0 0 3 3 3 0 PKD domain PKD_3 PF16820.5 gi|435851004|ref|YP_007312590.1| - 0.36 10.6 5.9 23 4.8 0.5 3.5 3 0 0 3 3 3 0 PKD-like domain Invasin_D3 PF09134.10 gi|435851004|ref|YP_007312590.1| - 2 8.7 6.6 16 5.9 0.7 3.5 3 0 0 3 3 3 0 Invasin, domain 3 TPR_1 PF00515.28 gi|435851005|ref|YP_007312591.1| - 1.6e-09 37.1 0.1 4e-06 26.4 0.0 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|435851005|ref|YP_007312591.1| - 3.6e-09 36.1 0.1 2.9e-06 26.9 0.0 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|435851005|ref|YP_007312591.1| - 1.8e-08 33.9 1.2 2.1e-06 27.5 0.0 2.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_9 PF13371.6 gi|435851005|ref|YP_007312591.1| - 5.8e-06 26.4 0.0 9.1e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|435851005|ref|YP_007312591.1| - 8.7e-06 25.8 0.0 4.7e-05 23.5 0.0 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|435851005|ref|YP_007312591.1| - 2.3e-05 24.8 0.1 0.0009 19.9 0.1 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|435851005|ref|YP_007312591.1| - 8.3e-05 23.0 0.0 0.00014 22.3 0.0 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|435851005|ref|YP_007312591.1| - 0.00021 20.9 0.0 0.014 15.1 0.0 2.3 1 1 1 2 2 2 1 TPR repeat TPR_7 PF13176.6 gi|435851005|ref|YP_007312591.1| - 0.0091 16.0 0.0 0.22 11.7 0.0 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|435851005|ref|YP_007312591.1| - 0.0098 14.9 0.0 0.017 14.0 0.0 1.3 1 0 0 1 1 1 1 NMDA receptor-regulated protein 1 TPR_16 PF13432.6 gi|435851005|ref|YP_007312591.1| - 0.0098 16.5 0.0 0.017 15.8 0.0 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat DUF3856 PF12968.7 gi|435851005|ref|YP_007312591.1| - 0.079 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF3856) Adeno_E3 PF06040.11 gi|435851005|ref|YP_007312591.1| - 0.2 11.8 0.1 0.54 10.4 0.0 1.8 2 0 0 2 2 2 0 Adenovirus E3 protein DHODB_Fe-S_bind PF10418.9 gi|435851006|ref|YP_007312592.1| - 8.1e-12 44.8 7.1 1e-11 44.5 6.1 1.7 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|435851006|ref|YP_007312592.1| - 5.5e-06 27.0 0.1 1.6e-05 25.5 0.1 1.7 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain NAD_binding_6 PF08030.12 gi|435851006|ref|YP_007312592.1| - 0.025 14.7 0.1 0.19 11.8 0.0 2.1 2 0 0 2 2 2 0 Ferric reductase NAD binding domain DHO_dh PF01180.21 gi|435851007|ref|YP_007312593.1| - 2.3e-66 224.0 1.4 2.6e-66 223.8 1.4 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|435851007|ref|YP_007312593.1| - 2.5e-09 36.7 0.4 0.00016 20.9 0.1 2.0 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|435851007|ref|YP_007312593.1| - 0.0021 17.6 0.9 0.0055 16.2 0.1 2.0 2 1 1 3 3 3 1 Histidine biosynthesis protein NMO PF03060.15 gi|435851007|ref|YP_007312593.1| - 0.0046 16.4 5.6 0.0091 15.4 5.3 1.5 1 1 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.25 gi|435851007|ref|YP_007312593.1| - 0.0052 15.8 0.6 0.0052 15.8 0.6 1.8 3 1 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain DUF561 PF04481.12 gi|435851007|ref|YP_007312593.1| - 0.0057 15.9 1.5 0.011 14.9 0.1 2.1 2 1 0 2 2 2 1 Protein of unknown function (DUF561) G3P_antiterm PF04309.12 gi|435851007|ref|YP_007312593.1| - 0.16 11.3 2.3 2.1 7.7 0.1 2.7 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator Porphobil_deam PF01379.20 gi|435851008|ref|YP_007312594.1| - 1.6e-69 233.5 0.3 2.3e-69 233.0 0.3 1.2 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|435851008|ref|YP_007312594.1| - 9.5e-11 41.9 0.1 2.2e-10 40.8 0.1 1.6 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Aminotran_3 PF00202.21 gi|435851009|ref|YP_007312595.1| - 9.5e-70 235.3 0.0 1.2e-69 234.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Get5_C PF18514.1 gi|435851009|ref|YP_007312595.1| - 0.062 13.0 0.0 3.3 7.5 0.0 2.4 2 0 0 2 2 2 0 Get5 C-terminal domain PATR PF12951.7 gi|435851009|ref|YP_007312595.1| - 1 9.5 3.5 23 5.2 0.5 2.5 2 0 0 2 2 2 0 Passenger-associated-transport-repeat ALAD PF00490.21 gi|435851010|ref|YP_007312596.1| - 1.2e-143 478.1 0.2 1.3e-143 477.9 0.2 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Shikimate_DH PF01488.20 gi|435851011|ref|YP_007312597.1| - 1.8e-40 138.2 5.0 3.3e-40 137.3 0.5 2.3 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|435851011|ref|YP_007312597.1| - 9.4e-37 126.0 0.1 2.1e-36 124.9 0.1 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|435851011|ref|YP_007312597.1| - 2.1e-20 72.9 1.6 4.2e-20 72.0 1.6 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|435851011|ref|YP_007312597.1| - 1.3e-09 38.5 1.0 3.4e-09 37.1 0.0 2.3 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|435851011|ref|YP_007312597.1| - 2.5e-07 31.0 0.8 4.8e-07 30.1 0.1 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|435851011|ref|YP_007312597.1| - 9.9e-05 21.8 0.1 0.00024 20.5 0.1 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glu_dehyd_C PF16912.5 gi|435851011|ref|YP_007312597.1| - 0.0002 20.9 0.2 0.00055 19.5 0.2 1.7 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus NAD_binding_7 PF13241.6 gi|435851011|ref|YP_007312597.1| - 0.00069 20.0 0.0 0.0022 18.4 0.0 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding GFO_IDH_MocA PF01408.22 gi|435851011|ref|YP_007312597.1| - 0.0016 19.2 0.1 0.0057 17.5 0.1 1.9 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|435851011|ref|YP_007312597.1| - 0.0024 18.2 0.0 0.0078 16.5 0.0 1.9 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ERK-JNK_inhib PF15002.6 gi|435851011|ref|YP_007312597.1| - 0.0038 16.9 1.0 0.0038 16.9 1.0 1.8 2 0 0 2 2 1 1 ERK and JNK pathways, inhibitor TrkA_N PF02254.18 gi|435851011|ref|YP_007312597.1| - 0.004 17.4 0.9 0.014 15.6 0.7 2.2 1 1 0 1 1 1 1 TrkA-N domain IlvN PF07991.12 gi|435851011|ref|YP_007312597.1| - 0.0055 16.3 0.0 0.039 13.5 0.0 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_10 PF13460.6 gi|435851011|ref|YP_007312597.1| - 0.012 15.5 1.1 0.042 13.7 1.0 2.0 1 1 0 1 1 1 0 NAD(P)H-binding AlaDh_PNT_C PF01262.21 gi|435851011|ref|YP_007312597.1| - 0.013 14.8 0.2 0.022 14.1 0.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain OCD_Mu_crystall PF02423.15 gi|435851011|ref|YP_007312597.1| - 0.013 14.5 1.6 0.017 14.1 0.0 2.0 3 0 0 3 3 3 0 Ornithine cyclodeaminase/mu-crystallin family THF_DHG_CYH_C PF02882.19 gi|435851011|ref|YP_007312597.1| - 0.023 14.0 0.4 0.54 9.6 0.2 2.8 1 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Peptidase_M15_2 PF05951.13 gi|435851011|ref|YP_007312597.1| - 0.045 13.4 0.6 0.11 12.2 0.6 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF882) OTCace PF00185.24 gi|435851011|ref|YP_007312597.1| - 0.16 12.0 1.2 1.7 8.7 0.0 2.4 2 0 0 2 2 2 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NAD_binding_7 PF13241.6 gi|435851012|ref|YP_007312598.1| - 2.5e-19 69.6 0.1 6.3e-19 68.3 0.0 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|435851012|ref|YP_007312598.1| - 8.6e-07 28.3 2.0 1.1e-06 27.9 0.0 2.3 3 0 0 3 3 3 1 Sirohaem biosynthesis protein central TrkA_N PF02254.18 gi|435851012|ref|YP_007312598.1| - 0.00011 22.4 0.2 0.00026 21.2 0.2 1.6 1 0 0 1 1 1 1 TrkA-N domain Shikimate_DH PF01488.20 gi|435851012|ref|YP_007312598.1| - 0.0055 16.8 0.1 0.014 15.4 0.1 1.7 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|435851012|ref|YP_007312598.1| - 0.0058 16.0 0.0 0.0092 15.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|435851012|ref|YP_007312598.1| - 0.019 15.2 0.0 0.8 10.0 0.0 2.2 1 1 1 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox PF00070.27 gi|435851012|ref|YP_007312598.1| - 0.029 14.9 0.8 1.4 9.6 0.0 3.1 3 1 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase YqzH PF14164.6 gi|435851012|ref|YP_007312598.1| - 0.042 13.9 0.9 1.7 8.8 0.0 2.5 2 0 0 2 2 2 0 YqzH-like protein 3HCDH_N PF02737.18 gi|435851012|ref|YP_007312598.1| - 0.074 12.9 0.0 0.21 11.5 0.0 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|435851012|ref|YP_007312598.1| - 0.1 13.2 0.0 0.29 11.7 0.0 1.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ELFV_dehydrog PF00208.21 gi|435851012|ref|YP_007312598.1| - 0.16 11.7 0.1 0.35 10.5 0.1 1.7 1 1 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AsnC_trans_reg2 PF17805.1 gi|435851013|ref|YP_007312599.1| - 4.3e-31 106.9 0.0 6.8e-31 106.3 0.0 1.3 1 0 0 1 1 1 1 AsnC-like ligand binding domain HTH_Crp_2 PF13545.6 gi|435851013|ref|YP_007312599.1| - 0.02 14.9 0.1 0.032 14.2 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.16 gi|435851013|ref|YP_007312599.1| - 0.021 14.3 0.3 0.05 13.1 0.3 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|435851013|ref|YP_007312599.1| - 0.024 14.6 0.3 1.3 9.0 0.1 2.3 1 1 1 2 2 2 0 HTH domain HNOB PF07700.15 gi|435851013|ref|YP_007312599.1| - 0.032 14.2 0.0 0.06 13.3 0.0 1.5 1 0 0 1 1 1 0 Haem-NO-binding DUF4423 PF14394.6 gi|435851013|ref|YP_007312599.1| - 0.083 12.6 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_36 PF13730.6 gi|435851013|ref|YP_007312599.1| - 0.091 12.7 0.1 1.5 8.8 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|435851013|ref|YP_007312599.1| - 0.19 11.4 0.6 2.7 7.7 0.2 2.7 2 1 0 2 2 2 0 Sigma-70, region 4 AsnC_trans_reg2 PF17805.1 gi|435851014|ref|YP_007312600.1| - 8.1e-23 80.4 0.0 1.3e-22 79.7 0.0 1.3 1 0 0 1 1 1 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|435851014|ref|YP_007312600.1| - 1.5e-06 27.9 0.1 5.5e-06 26.1 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|435851014|ref|YP_007312600.1| - 8.6e-05 22.4 0.0 0.00015 21.7 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain PKD PF00801.20 gi|435851014|ref|YP_007312600.1| - 0.008 16.0 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 PKD domain HTH_24 PF13412.6 gi|435851014|ref|YP_007312600.1| - 0.02 14.4 1.9 0.16 11.6 0.1 2.8 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding CinA_KH PF18146.1 gi|435851014|ref|YP_007312600.1| - 0.059 13.5 0.0 5 7.4 0.1 2.2 1 1 1 2 2 2 0 Damage-inducible protein CinA KH domain Radical_SAM PF04055.21 gi|435851015|ref|YP_007312601.1| - 1.7e-23 83.8 0.6 6.6e-23 81.9 0.0 2.1 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|435851015|ref|YP_007312601.1| - 1.3e-11 44.9 0.0 3.1e-11 43.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|435851015|ref|YP_007312601.1| - 2.1e-09 37.7 1.7 4.9e-09 36.6 1.7 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|435851015|ref|YP_007312601.1| - 6.2e-08 32.8 0.0 6.2e-08 32.8 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Ribosomal_S11 PF00411.19 gi|435851015|ref|YP_007312601.1| - 0.008 16.6 0.0 0.018 15.4 0.0 1.6 1 0 0 1 1 1 1 Ribosomal protein S11 Hydrolase_6 PF13344.6 gi|435851015|ref|YP_007312601.1| - 0.055 13.6 0.0 3.1 8.0 0.0 2.6 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|435851015|ref|YP_007312601.1| - 0.12 12.6 0.1 4.9 7.4 0.0 2.8 1 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase LapA_dom PF06305.11 gi|435851016|ref|YP_007312602.1| - 0.062 13.1 0.1 0.073 12.9 0.1 1.0 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain CcmE PF03100.15 gi|435851017|ref|YP_007312603.1| - 1.4e-17 63.8 0.1 1.6e-17 63.7 0.1 1.0 1 0 0 1 1 1 1 CcmE SecE PF00584.20 gi|435851017|ref|YP_007312603.1| - 0.024 14.5 1.2 0.024 14.5 1.2 1.6 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex Tad PF13400.6 gi|435851017|ref|YP_007312603.1| - 0.32 11.3 1.7 0.67 10.3 1.7 1.5 1 0 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like polyprenyl_synt PF00348.17 gi|435851018|ref|YP_007312604.1| - 3.1e-50 170.6 0.0 3.9e-50 170.3 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Radical_SAM PF04055.21 gi|435851019|ref|YP_007312605.1| - 9.2e-15 55.4 0.0 1.3e-14 54.9 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|435851019|ref|YP_007312605.1| - 4.8e-08 33.4 0.0 1.2e-07 32.2 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|435851019|ref|YP_007312605.1| - 0.0013 19.0 0.0 0.043 14.1 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fe-ADH_2 PF13685.6 gi|435851019|ref|YP_007312605.1| - 0.16 11.6 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase V-ATPase_G_2 PF16999.5 gi|435851020|ref|YP_007312606.1| - 2.8e-06 27.7 17.9 3.4e-06 27.4 17.9 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|435851020|ref|YP_007312606.1| - 3.8e-05 23.8 23.3 7.6e-05 22.8 21.8 1.8 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) DUF883 PF05957.13 gi|435851020|ref|YP_007312606.1| - 0.15 12.7 10.5 0.19 12.4 5.7 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) V-ATPase_G PF03179.15 gi|435851020|ref|YP_007312606.1| - 0.18 12.4 17.4 0.48 11.0 17.4 1.8 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit V_ATPase_I PF01496.19 gi|435851021|ref|YP_007312607.1| - 2.4e-28 98.6 9.8 1.1e-18 66.7 0.0 3.2 4 0 0 4 4 4 2 V-type ATPase 116kDa subunit family PsbI PF02532.14 gi|435851021|ref|YP_007312607.1| - 1.2 9.1 3.5 11 6.0 0.2 3.1 2 0 0 2 2 2 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) ATP-synt_C PF00137.21 gi|435851022|ref|YP_007312608.1| - 2.1e-17 63.2 10.5 2.7e-17 62.9 10.5 1.1 1 0 0 1 1 1 1 ATP synthase subunit C vATP-synt_E PF01991.18 gi|435851023|ref|YP_007312609.1| - 1.7e-19 70.0 15.0 1.8e-17 63.4 15.0 2.0 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.18 gi|435851023|ref|YP_007312609.1| - 0.055 13.6 8.5 0.12 12.5 8.5 1.7 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) Ubiquitin_3 PF14836.6 gi|435851023|ref|YP_007312609.1| - 0.062 13.3 0.1 0.13 12.3 0.1 1.5 1 0 0 1 1 1 0 Ubiquitin-like domain DUF2968 PF11180.8 gi|435851023|ref|YP_007312609.1| - 0.33 10.6 3.4 0.61 9.7 0.3 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2968) vATP-synt_AC39 PF01992.16 gi|435851024|ref|YP_007312610.1| - 4.1e-75 253.4 9.9 4.6e-75 253.2 9.9 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit MerR-DNA-bind PF09278.11 gi|435851024|ref|YP_007312610.1| - 0.0013 19.2 0.7 0.99 10.0 0.0 3.5 3 0 0 3 3 3 2 MerR, DNA binding ATP-synt_F PF01990.17 gi|435851025|ref|YP_007312611.1| - 1.6e-14 54.0 0.0 1.8e-14 53.8 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.25 gi|435851026|ref|YP_007312612.1| - 1.2e-95 319.2 0.0 1.7e-95 318.7 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|435851026|ref|YP_007312612.1| - 2.1e-46 156.7 0.3 3.7e-46 155.9 0.3 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|435851026|ref|YP_007312612.1| - 6.4e-17 61.8 1.7 6.4e-17 61.8 1.7 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.6 gi|435851026|ref|YP_007312612.1| - 0.0019 18.1 2.0 0.0076 16.2 0.2 2.3 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain AAA_22 PF13401.6 gi|435851026|ref|YP_007312612.1| - 0.022 15.0 0.0 0.047 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain NQRA PF05896.11 gi|435851026|ref|YP_007312612.1| - 0.027 13.9 0.1 0.055 12.9 0.1 1.4 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Myosin_N PF02736.19 gi|435851026|ref|YP_007312612.1| - 0.043 13.7 2.2 0.33 10.8 0.1 2.8 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain Peptidase_M23 PF01551.22 gi|435851026|ref|YP_007312612.1| - 0.074 13.3 2.0 5.1 7.4 0.3 2.7 2 1 0 2 2 2 0 Peptidase family M23 ATP-synt_ab PF00006.25 gi|435851027|ref|YP_007312613.1| - 1e-64 218.1 0.0 1.3e-64 217.7 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|435851027|ref|YP_007312613.1| - 3.3e-11 43.5 1.5 3.3e-11 43.5 1.5 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|435851027|ref|YP_007312613.1| - 0.0043 17.2 1.2 0.011 15.9 0.6 2.0 3 0 0 3 3 3 1 HAS barrel domain ATP-synt_D PF01813.17 gi|435851028|ref|YP_007312614.1| - 4.5e-56 189.8 8.5 5e-56 189.6 8.5 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Ead_Ea22 PF13935.6 gi|435851028|ref|YP_007312614.1| - 0.013 16.2 0.6 0.3 11.7 0.1 2.1 1 1 1 2 2 2 0 Ead/Ea22-like protein DUF4051 PF13260.6 gi|435851029|ref|YP_007312615.1| - 2.5 7.9 5.8 3.6 7.4 5.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4051) AhpC-TSA PF00578.21 gi|435851030|ref|YP_007312616.1| - 9.1e-37 125.7 0.0 1.1e-36 125.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|435851030|ref|YP_007312616.1| - 8e-16 58.1 0.0 9.6e-16 57.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|435851030|ref|YP_007312616.1| - 4.5e-06 26.6 0.0 7.3e-06 25.9 0.0 1.3 1 1 0 1 1 1 1 SCO1/SenC Thioredoxin_8 PF13905.6 gi|435851030|ref|YP_007312616.1| - 0.022 15.1 0.0 0.037 14.4 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like GSHPx PF00255.19 gi|435851030|ref|YP_007312616.1| - 0.035 13.7 0.0 0.049 13.2 0.0 1.2 1 0 0 1 1 1 0 Glutathione peroxidase AhpC-TSA_2 PF13911.6 gi|435851030|ref|YP_007312616.1| - 0.059 13.5 0.0 0.089 12.9 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme Orn_Arg_deC_N PF02784.16 gi|435851031|ref|YP_007312617.1| - 6.8e-31 107.5 0.0 8.3e-31 107.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|435851031|ref|YP_007312617.1| - 2.1e-20 72.7 0.0 2.2e-20 72.7 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HAD_2 PF13419.6 gi|435851032|ref|YP_007312618.1| - 2.3e-05 24.5 0.0 2.3e-05 24.5 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|435851032|ref|YP_007312618.1| - 0.12 12.6 0.0 0.12 12.6 0.0 1.1 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase NT5C PF06941.12 gi|435851032|ref|YP_007312618.1| - 0.14 12.0 0.0 0.14 12.0 0.0 1.1 1 0 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) CMD PF02627.20 gi|435851033|ref|YP_007312619.1| - 0.00018 21.5 0.0 0.00026 21.0 0.0 1.3 1 1 0 1 1 1 1 Carboxymuconolactone decarboxylase family Cytochrom_B562 PF07361.11 gi|435851034|ref|YP_007312620.1| - 0.035 14.7 3.7 0.055 14.1 3.7 1.4 1 0 0 1 1 1 0 Cytochrome b562 Semialdhyde_dh PF01118.24 gi|435851034|ref|YP_007312620.1| - 0.086 13.3 0.1 0.1 13.0 0.1 1.2 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain dCache_2 PF08269.11 gi|435851034|ref|YP_007312620.1| - 0.087 12.0 7.3 0.096 11.8 7.3 1.1 1 0 0 1 1 1 0 Cache domain BshC PF10079.9 gi|435851034|ref|YP_007312620.1| - 0.098 11.4 4.4 0.11 11.2 4.4 1.0 1 0 0 1 1 1 0 Bacillithiol biosynthesis BshC DUF1616 PF07760.11 gi|435851035|ref|YP_007312621.1| - 1.2e-109 366.3 1.2 1.4e-109 366.0 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) MFS_1 PF07690.16 gi|435851035|ref|YP_007312621.1| - 7e-06 25.2 7.8 1.2e-05 24.5 7.8 1.3 1 1 0 1 1 1 1 Major Facilitator Superfamily Sigma_reg_N PF13800.6 gi|435851035|ref|YP_007312621.1| - 0.66 10.3 2.4 3 8.2 0.4 2.4 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF4131 PF13567.6 gi|435851035|ref|YP_007312621.1| - 1.4 8.6 3.7 2.9 7.5 0.0 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF4131) 7TMR-DISM_7TM PF07695.11 gi|435851035|ref|YP_007312621.1| - 2.2 8.1 13.1 11 5.9 0.0 2.8 2 1 1 3 3 3 0 7TM diverse intracellular signalling CPBP PF02517.16 gi|435851036|ref|YP_007312622.1| - 7.6e-17 61.5 4.9 7.6e-17 61.5 4.9 2.9 3 1 0 3 3 3 2 CPBP intramembrane metalloprotease Adenylsucc_synt PF00709.21 gi|435851039|ref|YP_007312625.1| - 3.8e-158 526.8 0.0 4.2e-158 526.7 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Ribosomal_S19e PF01090.19 gi|435851040|ref|YP_007312626.1| - 5.9e-56 188.0 0.1 6.6e-56 187.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e DUF3253 PF11625.8 gi|435851040|ref|YP_007312626.1| - 0.13 12.5 0.1 1.4 9.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3253) dsDNA_bind PF01984.20 gi|435851041|ref|YP_007312627.1| - 1.6e-29 102.4 18.7 1.8e-29 102.3 18.7 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain DUF4355 PF14265.6 gi|435851041|ref|YP_007312627.1| - 0.0019 18.4 7.0 0.0019 18.4 7.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4355) SMC_N PF02463.19 gi|435851041|ref|YP_007312627.1| - 0.12 11.8 1.0 0.14 11.6 1.0 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain cwf18 PF08315.12 gi|435851041|ref|YP_007312627.1| - 0.12 13.0 7.8 0.15 12.8 7.8 1.1 1 0 0 1 1 1 0 cwf18 pre-mRNA splicing factor Asn_synthase PF00733.21 gi|435851042|ref|YP_007312628.1| - 0.0026 17.5 0.5 0.0042 16.8 0.1 1.5 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.13 gi|435851042|ref|YP_007312628.1| - 0.0034 16.9 0.0 0.01 15.4 0.0 1.9 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|435851042|ref|YP_007312628.1| - 0.1 12.1 0.0 0.45 10.0 0.0 2.0 2 0 0 2 2 2 0 Diphthamide synthase Ribosomal_L39 PF00832.20 gi|435851043|ref|YP_007312629.1| - 1.4e-20 72.6 5.0 1.7e-20 72.4 5.0 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|435851044|ref|YP_007312630.1| - 1.4e-10 41.3 0.5 1.7e-10 41.0 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Rap1a PF18602.1 gi|435851044|ref|YP_007312630.1| - 0.11 12.8 0.1 1.3 9.4 0.0 2.0 2 0 0 2 2 2 0 Rap1a immunity proteins eIF-6 PF01912.18 gi|435851045|ref|YP_007312631.1| - 5.7e-67 224.9 0.3 6.6e-67 224.7 0.3 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18A PF01775.17 gi|435851046|ref|YP_007312632.1| - 6.4e-11 42.4 0.2 7.1e-11 42.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A VWA_N PF08399.11 gi|435851046|ref|YP_007312632.1| - 0.079 13.4 0.0 0.087 13.3 0.0 1.0 1 0 0 1 1 1 0 VWA N-terminal Prefoldin PF02996.17 gi|435851047|ref|YP_007312633.1| - 4.5e-29 100.8 2.2 5.1e-29 100.6 2.2 1.0 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|435851047|ref|YP_007312633.1| - 1.9e-07 31.0 4.2 0.00052 19.9 0.2 2.1 2 0 0 2 2 2 2 Prefoldin subunit CdvA PF18822.1 gi|435851047|ref|YP_007312633.1| - 9.9e-05 22.2 6.3 0.048 13.5 0.5 2.1 2 0 0 2 2 2 2 CdvA-like coiled-coil domain Fib_alpha PF08702.10 gi|435851047|ref|YP_007312633.1| - 0.00067 19.9 1.2 0.63 10.2 0.1 2.1 2 0 0 2 2 2 2 Fibrinogen alpha/beta chain family DNA_pol3_delt_C PF14840.6 gi|435851047|ref|YP_007312633.1| - 0.0041 17.5 0.3 0.03 14.7 0.0 2.0 2 0 0 2 2 2 1 Processivity clamp loader gamma complex DNA pol III C-term DUF1043 PF06295.12 gi|435851047|ref|YP_007312633.1| - 0.0042 17.1 1.1 0.0074 16.3 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1043) DUF1664 PF07889.12 gi|435851047|ref|YP_007312633.1| - 0.0091 16.0 1.9 0.13 12.3 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1664) Sec34 PF04136.15 gi|435851047|ref|YP_007312633.1| - 0.0099 15.8 1.0 1.9 8.4 0.2 2.1 2 0 0 2 2 2 2 Sec34-like family Jnk-SapK_ap_N PF09744.9 gi|435851047|ref|YP_007312633.1| - 0.025 14.8 3.0 2.8 8.2 0.2 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 DHR10 PF18595.1 gi|435851047|ref|YP_007312633.1| - 0.037 14.1 1.8 0.037 14.1 1.8 2.2 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain Ribosomal_L5 PF00281.19 gi|435851047|ref|YP_007312633.1| - 0.059 13.7 1.4 0.25 11.7 1.3 2.1 1 1 0 1 1 1 0 Ribosomal protein L5 DUF4618 PF15397.6 gi|435851047|ref|YP_007312633.1| - 0.065 12.6 0.5 0.065 12.6 0.5 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) IFT57 PF10498.9 gi|435851047|ref|YP_007312633.1| - 0.12 11.4 4.0 3 6.7 0.1 2.0 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 DUF948 PF06103.11 gi|435851047|ref|YP_007312633.1| - 0.14 12.4 3.1 0.31 11.3 0.8 2.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Tektin PF03148.14 gi|435851047|ref|YP_007312633.1| - 0.18 10.6 6.7 0.55 8.9 0.3 2.0 2 0 0 2 2 2 0 Tektin family Seryl_tRNA_N PF02403.22 gi|435851047|ref|YP_007312633.1| - 0.22 11.8 3.3 1.7 8.9 0.2 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain BLOC1_2 PF10046.9 gi|435851047|ref|YP_007312633.1| - 0.29 11.5 5.4 2.6 8.4 0.6 2.3 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DASH_Dad2 PF08654.10 gi|435851047|ref|YP_007312633.1| - 0.73 10.3 4.8 0.29 11.6 1.2 1.9 2 0 0 2 2 2 0 DASH complex subunit Dad2 Spc7 PF08317.11 gi|435851047|ref|YP_007312633.1| - 1.5 7.6 7.8 1.2 8.0 0.6 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein SRP54 PF00448.22 gi|435851048|ref|YP_007312634.1| - 3.2e-72 242.3 0.4 5.8e-72 241.5 0.4 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|435851048|ref|YP_007312634.1| - 3.5e-10 39.9 4.7 6.9e-10 39.0 2.4 2.5 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|435851048|ref|YP_007312634.1| - 5.9e-05 22.9 0.9 0.00013 21.8 0.9 1.5 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|435851048|ref|YP_007312634.1| - 0.00016 21.4 0.1 0.0056 16.4 0.1 2.4 2 0 0 2 2 2 1 Thymidylate kinase Zeta_toxin PF06414.12 gi|435851048|ref|YP_007312634.1| - 0.00017 21.0 0.2 0.00034 19.9 0.2 1.6 1 1 0 1 1 1 1 Zeta toxin AAA_17 PF13207.6 gi|435851048|ref|YP_007312634.1| - 0.00019 21.9 2.3 0.00026 21.4 0.1 2.3 2 1 2 4 4 4 1 AAA domain AAA_16 PF13191.6 gi|435851048|ref|YP_007312634.1| - 0.0056 17.1 0.0 0.025 15.0 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|435851048|ref|YP_007312634.1| - 0.0097 16.3 1.4 0.027 14.9 0.1 2.5 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.20 gi|435851048|ref|YP_007312634.1| - 0.021 14.7 0.0 0.047 13.6 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase cobW PF02492.19 gi|435851048|ref|YP_007312634.1| - 0.025 14.2 0.1 0.049 13.2 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|435851048|ref|YP_007312634.1| - 0.044 14.0 0.3 0.14 12.4 0.1 2.0 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|435851048|ref|YP_007312634.1| - 0.052 13.7 0.1 0.14 12.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|435851048|ref|YP_007312634.1| - 0.057 13.7 0.1 0.19 11.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain Desmo_N PF06771.11 gi|435851048|ref|YP_007312634.1| - 0.058 13.8 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 Viral Desmoplakin N-terminus AAA_7 PF12775.7 gi|435851048|ref|YP_007312634.1| - 0.1 12.1 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region NTPase_1 PF03266.15 gi|435851048|ref|YP_007312634.1| - 0.1 12.5 1.0 0.97 9.3 0.9 2.4 1 1 0 1 1 1 0 NTPase CbiA PF01656.23 gi|435851048|ref|YP_007312634.1| - 0.12 12.4 0.0 0.29 11.2 0.0 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|435851048|ref|YP_007312634.1| - 0.44 10.4 2.8 0.35 10.8 0.5 2.1 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Trp_syntA PF00290.20 gi|435851049|ref|YP_007312635.1| - 4.8e-88 294.4 0.2 5.5e-88 294.2 0.2 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.17 gi|435851049|ref|YP_007312635.1| - 2e-05 24.2 1.4 0.0021 17.5 0.7 2.5 2 1 0 2 2 2 1 PcrB family His_biosynth PF00977.21 gi|435851049|ref|YP_007312635.1| - 7e-05 22.4 0.2 0.00012 21.6 0.2 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|435851049|ref|YP_007312635.1| - 0.00011 21.4 0.6 0.00024 20.3 0.5 1.5 1 1 0 1 1 1 1 FMN-dependent dehydrogenase Methyltrn_RNA_4 PF09936.9 gi|435851049|ref|YP_007312635.1| - 0.0013 18.6 0.0 0.002 18.0 0.0 1.3 1 0 0 1 1 1 1 SAM-dependent RNA methyltransferase DHO_dh PF01180.21 gi|435851049|ref|YP_007312635.1| - 0.0014 17.9 0.4 0.002 17.4 0.4 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|435851049|ref|YP_007312635.1| - 0.012 15.0 0.2 0.019 14.3 0.2 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase IMPDH PF00478.25 gi|435851049|ref|YP_007312635.1| - 0.013 14.5 1.4 0.22 10.5 0.8 2.4 2 1 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain IGPS PF00218.21 gi|435851049|ref|YP_007312635.1| - 0.017 14.3 0.0 0.024 13.8 0.0 1.2 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase ThiG PF05690.14 gi|435851049|ref|YP_007312635.1| - 0.019 14.3 0.1 0.025 13.9 0.1 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG PALP PF00291.25 gi|435851050|ref|YP_007312636.1| - 1.8e-41 142.5 1.1 2.2e-41 142.2 1.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme SF3A3 PF16837.5 gi|435851050|ref|YP_007312636.1| - 0.048 14.2 0.1 0.097 13.2 0.1 1.5 1 0 0 1 1 1 0 Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 PspC PF04024.12 gi|435851051|ref|YP_007312637.1| - 8.9e-24 83.1 0.7 9.7e-24 82.9 0.7 1.0 1 0 0 1 1 1 1 PspC domain IGPS PF00218.21 gi|435851052|ref|YP_007312638.1| - 3e-66 223.2 1.1 3.4e-66 223.0 1.1 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase NanE PF04131.14 gi|435851052|ref|YP_007312638.1| - 0.00043 19.5 0.6 0.04 13.1 0.1 2.9 2 1 1 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|435851052|ref|YP_007312638.1| - 0.0016 17.8 0.2 0.013 14.9 0.0 2.2 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|435851052|ref|YP_007312638.1| - 0.0055 16.0 0.4 0.0055 16.0 0.4 1.8 2 1 0 2 2 2 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|435851052|ref|YP_007312638.1| - 0.0095 15.4 0.1 0.017 14.6 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|435851052|ref|YP_007312638.1| - 0.033 13.2 0.0 0.067 12.2 0.0 1.5 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Arch_flagellin PF01917.16 gi|435851053|ref|YP_007312639.1| - 1.6e-30 106.5 22.9 3.5e-30 105.3 22.9 1.5 1 1 0 1 1 1 1 Archaebacterial flagellin OppC_N PF12911.7 gi|435851053|ref|YP_007312639.1| - 0.095 12.7 0.1 0.19 11.8 0.1 1.4 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C Arch_flagellin PF01917.16 gi|435851054|ref|YP_007312640.1| - 8.7e-36 123.6 10.9 1.3e-35 123.1 10.9 1.3 1 0 0 1 1 1 1 Archaebacterial flagellin Mrr_N PF14338.6 gi|435851055|ref|YP_007312641.1| - 0.0057 16.8 0.1 0.041 14.0 0.0 2.2 2 1 1 3 3 3 1 Mrr N-terminal domain TylF PF05711.11 gi|435851055|ref|YP_007312641.1| - 0.014 14.7 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 Macrocin-O-methyltransferase (TylF) LapA_dom PF06305.11 gi|435851056|ref|YP_007312642.1| - 0.66 9.8 0.0 0.66 9.8 0.0 3.9 5 1 1 6 6 6 0 Lipopolysaccharide assembly protein A domain HisKA_7TM PF16927.5 gi|435851056|ref|YP_007312642.1| - 1.2 9.2 27.5 1.7 8.6 27.5 1.2 1 0 0 1 1 1 0 N-terminal 7TM region of histidine kinase Arch_flagellin PF01917.16 gi|435851057|ref|YP_007312643.1| - 4.8e-34 117.9 14.6 7.1e-34 117.4 14.6 1.3 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|435851058|ref|YP_007312644.1| - 2.7e-32 112.2 7.3 3.5e-32 111.9 7.3 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin NTP_transf_4 PF13562.6 gi|435851060|ref|YP_007312646.1| - 0.11 12.7 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 Sugar nucleotidyl transferase DUF4878 PF12870.7 gi|435851060|ref|YP_007312646.1| - 0.41 11.0 2.0 0.47 10.8 0.2 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4878) Hist_deacetyl PF00850.19 gi|435851061|ref|YP_007312647.1| - 4e-80 269.5 0.1 1.5e-79 267.7 0.0 1.9 2 0 0 2 2 2 1 Histone deacetylase domain Acetyltransf_1 PF00583.25 gi|435851063|ref|YP_007312649.1| - 0.00047 20.4 0.0 0.00082 19.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|435851063|ref|YP_007312649.1| - 0.0057 17.1 0.0 0.01 16.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|435851063|ref|YP_007312649.1| - 0.0097 15.8 0.0 0.026 14.5 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain CheF-arch PF04283.12 gi|435851064|ref|YP_007312650.1| - 0.0017 18.1 0.0 0.0022 17.8 0.0 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea GRAM PF02893.20 gi|435851064|ref|YP_007312650.1| - 0.15 11.9 0.0 0.52 10.2 0.0 1.8 1 1 1 2 2 2 0 GRAM domain V4R PF02830.18 gi|435851065|ref|YP_007312651.1| - 5.2e-06 26.4 2.2 1.1e-05 25.3 2.2 1.6 1 0 0 1 1 1 1 V4R domain Spp-24 PF07448.11 gi|435851065|ref|YP_007312651.1| - 0.043 14.0 0.1 0.086 13.0 0.1 1.4 1 0 0 1 1 1 0 Secreted phosphoprotein 24 (Spp-24) cystatin-like domain ATPase PF06745.13 gi|435851067|ref|YP_007312653.1| - 8.2e-45 152.9 0.0 1.7e-44 151.9 0.0 1.5 2 0 0 2 2 2 1 KaiC AAA_25 PF13481.6 gi|435851067|ref|YP_007312653.1| - 1.1e-08 34.8 0.0 2.3e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|435851067|ref|YP_007312653.1| - 3.3e-05 22.7 0.0 0.034 12.8 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein DnaB_C PF03796.15 gi|435851067|ref|YP_007312653.1| - 0.00028 20.3 0.0 0.00043 19.7 0.0 1.5 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|435851067|ref|YP_007312653.1| - 0.00037 20.3 0.0 0.00065 19.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|435851067|ref|YP_007312653.1| - 0.0017 18.4 0.0 0.0032 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|435851067|ref|YP_007312653.1| - 0.0027 16.8 0.0 0.0047 16.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein Rad51 PF08423.11 gi|435851067|ref|YP_007312653.1| - 0.0045 16.3 0.0 0.0068 15.7 0.0 1.3 1 0 0 1 1 1 1 Rad51 IstB_IS21 PF01695.17 gi|435851067|ref|YP_007312653.1| - 0.0054 16.5 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.6 gi|435851067|ref|YP_007312653.1| - 0.0077 16.4 0.0 0.019 15.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|435851067|ref|YP_007312653.1| - 0.016 14.9 0.0 0.04 13.6 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_29 PF13555.6 gi|435851067|ref|YP_007312653.1| - 0.017 14.9 0.0 0.034 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|435851067|ref|YP_007312653.1| - 0.02 15.2 0.1 0.047 14.1 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 gi|435851067|ref|YP_007312653.1| - 0.026 14.0 0.0 0.045 13.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_22 PF13401.6 gi|435851067|ref|YP_007312653.1| - 0.032 14.5 0.0 0.065 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|435851067|ref|YP_007312653.1| - 0.035 14.1 0.0 0.068 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF2075 PF09848.9 gi|435851067|ref|YP_007312653.1| - 0.039 13.2 0.0 0.064 12.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_10 PF12846.7 gi|435851067|ref|YP_007312653.1| - 0.052 12.4 0.0 0.082 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain MEDS PF14417.6 gi|435851067|ref|YP_007312653.1| - 0.063 13.1 0.0 0.19 11.6 0.0 1.8 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAXNEB PF05625.11 gi|435851067|ref|YP_007312653.1| - 0.08 12.1 0.1 0.49 9.5 0.0 2.1 2 0 0 2 2 2 0 PAXNEB protein ABC_tran PF00005.27 gi|435851067|ref|YP_007312653.1| - 0.1 13.1 0.0 0.31 11.6 0.0 1.8 2 0 0 2 2 2 0 ABC transporter RNA_helicase PF00910.22 gi|435851067|ref|YP_007312653.1| - 0.16 12.4 0.0 0.69 10.3 0.0 2.1 2 0 0 2 2 2 0 RNA helicase RasGAP_C PF03836.15 gi|435851068|ref|YP_007312654.1| - 0.15 12.2 1.1 0.26 11.4 1.1 1.4 1 0 0 1 1 1 0 RasGAP C-terminus DUF4201 PF13870.6 gi|435851069|ref|YP_007312655.1| - 1.3e-05 25.0 13.2 7.5e-05 22.5 5.1 3.3 3 0 0 3 3 3 1 Domain of unknown function (DUF4201) Spc7 PF08317.11 gi|435851069|ref|YP_007312655.1| - 0.0099 14.8 21.0 0.013 14.4 8.1 3.0 2 1 1 3 3 3 2 Spc7 kinetochore protein Seryl_tRNA_N PF02403.22 gi|435851069|ref|YP_007312655.1| - 0.017 15.4 12.7 0.11 12.8 2.9 3.6 3 0 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF16 PF01519.16 gi|435851069|ref|YP_007312655.1| - 0.02 15.4 2.2 0.02 15.4 2.2 3.3 3 0 0 3 3 3 0 Protein of unknown function DUF16 FliJ PF02050.16 gi|435851069|ref|YP_007312655.1| - 0.031 14.5 9.7 3.7 7.8 4.2 3.8 3 1 0 3 3 3 0 Flagellar FliJ protein HAMP PF00672.25 gi|435851069|ref|YP_007312655.1| - 0.061 13.7 0.1 0.84 10.1 0.0 2.8 2 0 0 2 2 2 0 HAMP domain NPV_P10 PF05531.12 gi|435851069|ref|YP_007312655.1| - 0.07 13.6 17.6 0.095 13.2 1.8 5.0 2 1 1 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF3347 PF11827.8 gi|435851069|ref|YP_007312655.1| - 0.081 13.1 6.0 0.19 11.9 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3347) TBCA PF02970.16 gi|435851069|ref|YP_007312655.1| - 0.092 13.1 10.5 0.29 11.5 1.1 4.0 3 1 1 4 4 4 0 Tubulin binding cofactor A DUF948 PF06103.11 gi|435851069|ref|YP_007312655.1| - 0.11 12.7 8.7 0.61 10.4 0.4 4.4 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) DUF4007 PF13182.6 gi|435851069|ref|YP_007312655.1| - 0.31 10.1 5.2 0.091 11.9 1.0 2.0 2 1 1 3 3 3 0 Protein of unknown function (DUF4007) SlyX PF04102.12 gi|435851069|ref|YP_007312655.1| - 0.34 11.5 13.9 16 6.2 0.1 5.2 4 1 1 5 5 5 0 SlyX Fez1 PF06818.15 gi|435851069|ref|YP_007312655.1| - 0.4 11.1 13.0 0.28 11.6 5.0 2.8 2 1 0 2 2 2 0 Fez1 DUF2730 PF10805.8 gi|435851069|ref|YP_007312655.1| - 0.59 10.3 12.8 7.7 6.7 0.2 4.8 2 1 3 5 5 5 0 Protein of unknown function (DUF2730) DUF1664 PF07889.12 gi|435851069|ref|YP_007312655.1| - 0.73 9.9 11.4 1.8 8.6 2.2 3.8 3 1 0 3 3 3 0 Protein of unknown function (DUF1664) HalX PF08663.10 gi|435851069|ref|YP_007312655.1| - 0.74 10.2 8.6 1.3 9.3 0.3 4.1 4 0 0 4 4 4 0 HalX domain Syntaxin_2 PF14523.6 gi|435851069|ref|YP_007312655.1| - 1.1 9.7 18.3 1.5 9.3 0.3 4.3 2 1 1 3 3 3 0 Syntaxin-like protein APG6_N PF17675.1 gi|435851069|ref|YP_007312655.1| - 1.1 9.8 21.0 0.26 11.8 4.6 3.7 2 1 0 3 3 3 0 Apg6 coiled-coil region LPP PF04728.13 gi|435851069|ref|YP_007312655.1| - 2.1 8.8 13.3 23 5.5 0.6 5.3 3 3 1 4 4 4 0 Lipoprotein leucine-zipper GARP PF16731.5 gi|435851069|ref|YP_007312655.1| - 2.9 7.5 6.7 5.9 6.5 1.2 3.2 3 0 0 3 3 3 0 Glutamic acid/alanine-rich protein of Trypanosoma Laminin_II PF06009.12 gi|435851069|ref|YP_007312655.1| - 4 7.5 24.9 0.25 11.4 9.4 4.3 2 2 2 4 4 4 0 Laminin Domain II KxDL PF10241.9 gi|435851069|ref|YP_007312655.1| - 9.5 6.6 19.7 0.2 12.0 5.0 4.5 4 2 1 5 5 5 0 Uncharacterized conserved protein DUF1690 PF07956.11 gi|435851069|ref|YP_007312655.1| - 9.6 6.6 19.5 3.6 8.0 1.7 3.6 3 1 0 3 3 3 0 Protein of Unknown function (DUF1690) Acetyltransf_1 PF00583.25 gi|435851070|ref|YP_007312656.1| - 4.7e-09 36.5 0.0 7.8e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|435851070|ref|YP_007312656.1| - 1.4e-05 25.4 0.1 5.7e-05 23.5 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|435851070|ref|YP_007312656.1| - 4.4e-05 23.4 0.1 0.0013 18.6 0.1 2.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|435851070|ref|YP_007312656.1| - 0.0029 17.5 0.2 0.023 14.6 0.0 2.6 3 1 0 3 3 3 1 FR47-like protein Acetyltransf_18 PF18014.1 gi|435851070|ref|YP_007312656.1| - 0.13 12.1 0.0 0.75 9.6 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Glyoxalase PF00903.25 gi|435851070|ref|YP_007312656.1| - 0.14 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Emaravirus_P4 PF16505.5 gi|435851071|ref|YP_007312657.1| - 0.047 12.7 0.1 0.047 12.7 0.1 1.0 1 0 0 1 1 1 0 P4 movement protein of Emaravirus, and the 30K superfamily HMGL-like PF00682.19 gi|435851073|ref|YP_007312659.1| - 2.7e-79 266.5 2.8 3.7e-79 266.0 2.8 1.2 1 0 0 1 1 1 1 HMGL-like NAD_kinase PF01513.21 gi|435851074|ref|YP_007312660.1| - 3.7e-54 183.9 0.3 4.7e-54 183.6 0.3 1.2 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|435851074|ref|YP_007312660.1| - 0.0014 18.3 0.0 0.0025 17.4 0.0 1.5 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain Cu-oxidase_2 PF07731.14 gi|435851074|ref|YP_007312660.1| - 0.13 12.0 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Multicopper oxidase TEX12 PF15219.6 gi|435851074|ref|YP_007312660.1| - 0.14 12.5 0.0 0.48 10.8 0.0 1.8 2 0 0 2 2 2 0 Testis-expressed 12 Inositol_P PF00459.25 gi|435851075|ref|YP_007312661.1| - 2.1e-31 109.4 0.0 2.4e-31 109.3 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase_glpX PF03320.13 gi|435851075|ref|YP_007312661.1| - 0.0017 17.3 0.0 0.0019 17.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded FBPase PF00316.20 gi|435851075|ref|YP_007312661.1| - 0.027 13.9 0.0 0.039 13.4 0.0 1.3 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase, N-terminal domain Gp_dh_C PF02800.20 gi|435851076|ref|YP_007312662.1| - 9.1e-27 93.6 0.0 1.4e-26 92.9 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|435851076|ref|YP_007312662.1| - 8.3e-11 42.1 0.3 2e-10 40.8 0.3 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|435851076|ref|YP_007312662.1| - 3.2e-07 30.6 0.5 2.5e-06 27.7 0.0 2.5 3 0 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|435851076|ref|YP_007312662.1| - 0.00054 20.2 0.1 0.0014 18.9 0.1 1.7 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|435851076|ref|YP_007312662.1| - 0.0013 18.1 0.2 0.009 15.4 0.2 2.1 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|435851076|ref|YP_007312662.1| - 0.0034 18.0 0.0 0.0099 16.5 0.0 1.8 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|435851076|ref|YP_007312662.1| - 0.015 16.1 0.0 0.031 15.1 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold PglD_N PF17836.1 gi|435851076|ref|YP_007312662.1| - 0.053 14.2 0.2 0.22 12.2 0.1 2.1 2 0 0 2 2 2 0 PglD N-terminal domain Semialdhyde_dh PF01118.24 gi|435851076|ref|YP_007312662.1| - 0.081 13.4 0.1 0.18 12.3 0.1 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|435851076|ref|YP_007312662.1| - 0.23 11.5 1.9 3.1 7.8 1.9 2.3 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CooT PF10133.9 gi|435851077|ref|YP_007312663.1| - 3.3e-20 72.1 1.6 3.6e-20 72.0 1.6 1.0 1 0 0 1 1 1 1 CO dehydrogenase accessory protein CooT DUF89 PF01937.19 gi|435851078|ref|YP_007312664.1| - 1.6e-53 181.9 0.0 1.8e-53 181.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 VIT1 PF01988.19 gi|435851079|ref|YP_007312665.1| - 7.6e-13 48.8 14.8 9.5e-08 32.2 1.5 2.0 1 1 1 2 2 2 2 VIT family Na_Ca_ex PF01699.24 gi|435851080|ref|YP_007312666.1| - 4.4e-55 185.8 32.5 5.5e-30 104.3 10.6 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein FSA_C PF10479.9 gi|435851080|ref|YP_007312666.1| - 0.13 10.3 1.1 0.81 7.7 0.2 1.9 2 0 0 2 2 2 0 Fragile site-associated protein C-terminus MORN_2 PF07661.13 gi|435851081|ref|YP_007312667.1| - 6.4e-07 28.9 1.1 0.00049 20.0 0.1 3.0 2 1 1 3 3 3 2 MORN repeat variant CopK PF11525.8 gi|435851081|ref|YP_007312667.1| - 0.0082 15.7 4.9 0.19 11.4 0.2 3.0 3 0 0 3 3 3 2 Copper resistance protein K F5_F8_type_C PF00754.25 gi|435851081|ref|YP_007312667.1| - 0.052 13.7 1.5 0.067 13.3 1.5 1.2 1 0 0 1 1 1 0 F5/8 type C domain DsbD_2 PF13386.6 gi|435851082|ref|YP_007312668.1| - 1.5e-23 83.8 22.2 1.8e-23 83.5 22.2 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD PF02683.15 gi|435851082|ref|YP_007312668.1| - 9.8e-10 38.7 21.4 1.3e-09 38.2 21.4 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF2182 PF09948.9 gi|435851082|ref|YP_007312668.1| - 0.076 12.9 7.5 0.022 14.6 2.9 2.0 1 1 1 2 2 2 0 Predicted metal-binding integral membrane protein (DUF2182) ArsP_1 PF03773.13 gi|435851083|ref|YP_007312669.1| - 4e-09 36.0 5.2 4e-09 36.0 5.2 1.5 1 1 1 2 2 2 1 Predicted permease ArsP_1 PF03773.13 gi|435851084|ref|YP_007312670.1| - 2.7e-09 36.6 13.5 3.5e-09 36.3 13.5 1.1 1 0 0 1 1 1 1 Predicted permease Herpes_glycop PF01528.16 gi|435851084|ref|YP_007312670.1| - 0.069 12.0 6.3 0.089 11.6 6.3 1.2 1 0 0 1 1 1 0 Herpesvirus glycoprotein M DUF1450 PF07293.11 gi|435851085|ref|YP_007312671.1| - 0.002 17.9 0.2 0.0034 17.1 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1450) SBF PF01758.16 gi|435851086|ref|YP_007312672.1| - 2e-52 177.7 16.5 2e-52 177.7 16.5 2.7 3 0 0 3 3 3 2 Sodium Bile acid symporter family SBF_like PF13593.6 gi|435851086|ref|YP_007312672.1| - 1.6e-07 30.9 26.1 2.2e-07 30.5 26.1 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) EMP70 PF02990.16 gi|435851086|ref|YP_007312672.1| - 0.46 9.1 10.7 0.56 8.8 9.7 1.6 1 1 0 1 1 1 0 Endomembrane protein 70 HTH_5 PF01022.20 gi|435851087|ref|YP_007312673.1| - 4.4e-09 36.1 0.1 7e-09 35.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|435851087|ref|YP_007312673.1| - 2.9e-06 27.2 0.0 4e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Cut8 PF08559.10 gi|435851087|ref|YP_007312673.1| - 0.021 14.5 0.4 0.022 14.4 0.4 1.1 1 0 0 1 1 1 0 Cut8, nuclear proteasome tether protein DUF5370 PF17340.2 gi|435851087|ref|YP_007312673.1| - 0.12 12.3 0.0 0.38 10.7 0.0 1.9 1 1 1 2 2 2 0 Family of unknown function (DUF5370) SBF PF01758.16 gi|435851088|ref|YP_007312674.1| - 2.5e-30 105.6 14.2 2.5e-30 105.6 14.2 1.9 2 1 0 2 2 2 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|435851088|ref|YP_007312674.1| - 1.2e-13 51.1 22.7 1.6e-13 50.7 22.7 1.2 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) FixQ PF05545.11 gi|435851088|ref|YP_007312674.1| - 9.2 6.3 8.5 2.2 8.3 1.0 3.1 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ TauE PF01925.19 gi|435851089|ref|YP_007312675.1| - 7.7e-28 97.7 33.9 9.6e-28 97.4 33.9 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE CorA PF01544.18 gi|435851090|ref|YP_007312676.1| - 9.1e-78 261.5 1.3 1.1e-77 261.3 1.3 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein HTH_5 PF01022.20 gi|435851093|ref|YP_007312679.1| - 9.2e-17 60.7 0.8 2.3e-16 59.4 0.8 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|435851093|ref|YP_007312679.1| - 4.3e-13 49.1 0.0 8.4e-13 48.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|435851093|ref|YP_007312679.1| - 0.0012 18.7 0.0 0.0066 16.3 0.0 2.0 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|435851093|ref|YP_007312679.1| - 0.0092 15.5 0.6 0.097 12.2 0.5 2.4 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding PaaX PF07848.12 gi|435851093|ref|YP_007312679.1| - 0.011 16.0 0.0 0.022 14.9 0.0 1.7 1 0 0 1 1 1 0 PaaX-like protein Lipoprotein_9 PF03180.14 gi|435851093|ref|YP_007312679.1| - 0.013 14.7 0.0 0.018 14.2 0.0 1.3 1 0 0 1 1 1 0 NLPA lipoprotein HTH_34 PF13601.6 gi|435851093|ref|YP_007312679.1| - 0.053 13.7 0.1 0.12 12.5 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|435851093|ref|YP_007312679.1| - 0.062 13.2 0.1 0.2 11.5 0.0 1.9 2 0 0 2 2 2 0 MarR family ArsP_1 PF03773.13 gi|435851094|ref|YP_007312680.1| - 3.2e-60 203.8 24.1 4.2e-60 203.4 24.1 1.1 1 0 0 1 1 1 1 Predicted permease Gly-zipper_Omp PF13488.6 gi|435851094|ref|YP_007312680.1| - 1.6 8.8 10.9 21 5.2 0.7 3.5 3 0 0 3 3 3 0 Glycine zipper DUF5394 PF17372.2 gi|435851095|ref|YP_007312681.1| - 0.089 12.3 0.1 0.089 12.3 0.1 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5394) MeMO_Hyd_G PF02964.16 gi|435851096|ref|YP_007312682.1| - 0.018 15.0 0.7 0.024 14.6 0.7 1.2 1 0 0 1 1 1 0 Methane monooxygenase, hydrolase gamma chain IL2 PF00715.17 gi|435851097|ref|YP_007312683.1| - 0.092 12.7 0.2 0.2 11.6 0.2 1.5 1 0 0 1 1 1 0 Interleukin 2 MtrA PF04208.14 gi|435851098|ref|YP_007312684.1| - 1.1e-42 145.6 0.1 1.4e-42 145.3 0.1 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A Phage_int_SAM_3 PF14659.6 gi|435851098|ref|YP_007312684.1| - 0.0033 17.7 0.5 3.3 8.0 0.1 2.8 3 0 0 3 3 3 2 Phage integrase, N-terminal SAM-like domain DGC PF08859.11 gi|435851099|ref|YP_007312685.1| - 2.5e-34 117.6 3.9 3.3e-34 117.2 3.9 1.1 1 0 0 1 1 1 1 DGC domain Thioredoxin_3 PF13192.6 gi|435851100|ref|YP_007312686.1| - 2.9e-26 91.3 3.2 3.1e-26 91.2 3.2 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|435851100|ref|YP_007312686.1| - 0.00059 20.0 0.5 0.0011 19.1 0.5 1.5 1 1 0 1 1 1 1 Glutaredoxin ArsD PF06953.11 gi|435851100|ref|YP_007312686.1| - 0.0085 16.4 0.1 0.014 15.8 0.0 1.3 1 1 0 1 1 1 1 Arsenical resistance operon trans-acting repressor ArsD NADHdeh_related PF10125.9 gi|435851100|ref|YP_007312686.1| - 0.086 12.2 0.1 0.093 12.1 0.1 1.1 1 0 0 1 1 1 0 NADH dehydrogenase I, subunit N related protein Thioredoxin_4 PF13462.6 gi|435851100|ref|YP_007312686.1| - 0.14 12.4 0.9 0.44 10.7 0.3 1.8 1 1 0 1 1 1 0 Thioredoxin Metallophos_2 PF12850.7 gi|435851101|ref|YP_007312687.1| - 1.7e-32 112.9 0.0 2.1e-32 112.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|435851101|ref|YP_007312687.1| - 2.5e-14 54.3 0.3 4.3e-13 50.2 0.3 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|435851101|ref|YP_007312687.1| - 0.0023 17.3 0.0 0.032 13.6 0.0 2.1 2 0 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily FBPase_2 PF06874.11 gi|435851101|ref|YP_007312687.1| - 0.02 13.2 0.1 0.19 10.0 0.0 2.0 1 1 1 2 2 2 0 Firmicute fructose-1,6-bisphosphatase IcmF_C PF06744.12 gi|435851101|ref|YP_007312687.1| - 0.18 11.4 0.0 0.27 10.8 0.0 1.1 1 0 0 1 1 1 0 Type VI secretion protein IcmF C-terminal ArsP_1 PF03773.13 gi|435851102|ref|YP_007312688.1| - 4.9e-79 265.6 28.2 6.2e-79 265.2 28.2 1.0 1 0 0 1 1 1 1 Predicted permease Rax2 PF12768.7 gi|435851102|ref|YP_007312688.1| - 0.031 13.8 0.0 0.055 12.9 0.0 1.3 1 0 0 1 1 1 0 Cortical protein marker for cell polarity Hydantoinase_A PF01968.18 gi|435851104|ref|YP_007312690.1| - 6.5e-32 111.0 3.1 8e-32 110.7 0.2 2.3 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|435851104|ref|YP_007312690.1| - 3.4e-30 105.1 5.0 4.4e-27 94.9 1.2 3.2 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|435851104|ref|YP_007312690.1| - 1.9e-07 30.0 1.6 0.004 15.8 0.2 2.2 2 0 0 2 2 2 2 MutL protein StbA PF06406.11 gi|435851104|ref|YP_007312690.1| - 0.002 17.4 0.1 0.0058 15.9 0.1 1.7 1 0 0 1 1 1 1 StbA protein ROK PF00480.20 gi|435851104|ref|YP_007312690.1| - 0.043 13.3 0.0 0.12 11.9 0.0 1.7 1 0 0 1 1 1 0 ROK family BcrAD_BadFG PF01869.20 gi|435851104|ref|YP_007312690.1| - 1.2 8.6 7.3 6.6 6.1 5.4 2.6 2 1 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family CBS PF00571.28 gi|435851105|ref|YP_007312691.1| - 4.8e-16 58.9 4.9 2.2e-09 37.6 0.7 2.2 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 gi|435851105|ref|YP_007312691.1| - 1.8e-14 53.5 0.5 4.8e-14 52.1 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|435851105|ref|YP_007312691.1| - 2.4e-11 43.8 0.1 6.6e-11 42.4 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|435851105|ref|YP_007312691.1| - 6.5e-07 29.3 0.1 4e-06 26.8 0.0 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|435851105|ref|YP_007312691.1| - 4.6e-05 23.2 0.1 0.00025 20.8 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|435851105|ref|YP_007312691.1| - 0.00011 22.0 0.0 0.00044 20.2 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|435851105|ref|YP_007312691.1| - 0.0063 16.9 0.0 0.039 14.4 0.0 2.3 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain MqsA_antitoxin PF15731.5 gi|435851105|ref|YP_007312691.1| - 0.0078 16.3 0.0 0.016 15.3 0.0 1.5 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA Pou PF00157.17 gi|435851105|ref|YP_007312691.1| - 0.028 14.4 0.0 0.12 12.4 0.0 2.0 1 1 0 1 1 1 0 Pou domain - N-terminal to homeobox domain DNA_pol3_beta_2 PF02767.16 gi|435851105|ref|YP_007312691.1| - 0.051 13.8 0.2 0.12 12.6 0.1 1.6 1 1 0 1 1 1 0 DNA polymerase III beta subunit, central domain Ribosomal_L9_C PF03948.14 gi|435851105|ref|YP_007312691.1| - 0.072 13.6 0.3 0.67 10.5 0.1 2.3 1 1 1 2 2 2 0 Ribosomal protein L9, C-terminal domain HTH_24 PF13412.6 gi|435851105|ref|YP_007312691.1| - 0.088 12.4 0.0 0.21 11.2 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|435851105|ref|YP_007312691.1| - 0.11 12.0 0.0 0.59 9.7 0.1 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 TetR_N PF00440.23 gi|435851105|ref|YP_007312691.1| - 0.14 11.9 0.0 0.48 10.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Aminotran_5 PF00266.19 gi|435851106|ref|YP_007312692.1| - 1.2e-47 162.6 0.0 1.5e-47 162.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|435851106|ref|YP_007312692.1| - 1.3e-05 24.7 0.0 3e-05 23.5 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|435851106|ref|YP_007312692.1| - 0.00011 21.5 0.0 0.00022 20.5 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_3 PF00202.21 gi|435851106|ref|YP_007312692.1| - 0.032 12.9 0.0 0.24 10.0 0.0 2.1 1 1 1 2 2 2 0 Aminotransferase class-III DMRL_synthase PF00885.19 gi|435851107|ref|YP_007312693.1| - 3.7e-19 69.0 0.1 4.6e-19 68.7 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DMRL_synthase PF00885.19 gi|435851108|ref|YP_007312694.1| - 1.6e-28 99.3 0.1 1.7e-28 99.2 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.21 gi|435851109|ref|YP_007312695.1| - 2.3e-65 221.1 0.0 2.6e-65 221.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|435851109|ref|YP_007312695.1| - 0.00079 18.5 0.0 0.013 14.5 0.0 2.2 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|435851109|ref|YP_007312695.1| - 0.00087 18.7 0.0 0.0012 18.2 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|435851109|ref|YP_007312695.1| - 0.0033 16.0 0.0 0.0076 14.8 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Rsbr_N PF08678.10 gi|435851109|ref|YP_007312695.1| - 0.015 15.3 0.0 0.041 13.9 0.0 1.7 1 0 0 1 1 1 0 Rsbr N terminal Beta_elim_lyase PF01212.21 gi|435851109|ref|YP_007312695.1| - 0.061 12.6 0.0 0.16 11.2 0.0 1.7 2 0 0 2 2 2 0 Beta-eliminating lyase CTP_transf_like PF01467.26 gi|435851110|ref|YP_007312696.1| - 7.6e-19 68.3 0.0 8.8e-19 68.1 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|435851110|ref|YP_007312696.1| - 0.087 12.7 0.0 0.24 11.3 0.0 1.9 1 1 0 1 1 1 0 FAD synthetase Urm1 PF09138.11 gi|435851110|ref|YP_007312696.1| - 0.14 12.5 0.1 0.23 11.8 0.1 1.4 1 1 0 1 1 1 0 Urm1 (Ubiquitin related modifier) HcyBio PF01837.16 gi|435851111|ref|YP_007312697.1| - 2.8e-146 486.8 0.8 3.9e-146 486.3 0.8 1.2 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation CBS PF00571.28 gi|435851111|ref|YP_007312697.1| - 4.4e-25 87.9 4.5 4.7e-12 46.2 0.0 3.1 3 0 0 3 3 3 2 CBS domain IF3_N PF05198.16 gi|435851111|ref|YP_007312697.1| - 0.017 15.4 2.6 1.2 9.4 0.0 3.4 3 1 0 3 3 3 0 Translation initiation factor IF-3, N-terminal domain Fer4 PF00037.27 gi|435851112|ref|YP_007312698.1| - 7.6e-18 63.5 12.1 4.8e-09 35.7 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435851112|ref|YP_007312698.1| - 5.7e-12 45.6 22.9 1.1e-08 35.1 13.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435851112|ref|YP_007312698.1| - 2.5e-11 43.2 13.1 9.8e-06 25.4 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|435851112|ref|YP_007312698.1| - 8.7e-11 41.3 13.5 2.2e-05 24.3 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|435851112|ref|YP_007312698.1| - 1.4e-10 41.9 9.6 2.5e-05 25.1 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|435851112|ref|YP_007312698.1| - 4.5e-10 40.0 12.9 1.2e-09 38.6 13.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435851112|ref|YP_007312698.1| - 1.8e-08 34.8 4.4 0.00073 20.0 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|435851112|ref|YP_007312698.1| - 2.2e-08 34.4 5.7 0.0005 20.5 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435851112|ref|YP_007312698.1| - 6e-08 32.7 13.6 0.00039 20.5 2.8 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435851112|ref|YP_007312698.1| - 6.6e-08 32.6 14.9 4.7e-07 29.8 15.3 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|435851112|ref|YP_007312698.1| - 8.5e-08 32.6 14.5 0.00014 22.4 1.5 2.6 3 0 0 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|435851112|ref|YP_007312698.1| - 4.5e-07 29.9 12.1 0.00048 20.4 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|435851112|ref|YP_007312698.1| - 2.7e-06 27.5 10.8 2.6e-05 24.4 10.8 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435851112|ref|YP_007312698.1| - 1.9e-05 25.3 19.1 0.016 16.1 6.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|435851112|ref|YP_007312698.1| - 0.00012 22.8 9.8 0.037 14.9 1.5 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|435851112|ref|YP_007312698.1| - 0.0017 19.0 12.8 0.036 14.8 1.7 2.7 3 0 0 3 3 3 2 4Fe-4S single cluster domain NIL PF09383.10 gi|435851112|ref|YP_007312698.1| - 0.0056 16.5 0.1 0.0072 16.2 0.1 1.2 1 0 0 1 1 1 1 NIL domain zf-C2H2_11 PF16622.5 gi|435851112|ref|YP_007312698.1| - 0.94 9.3 8.1 3.4 7.5 1.3 2.2 2 0 0 2 2 2 0 zinc-finger C2H2-type ETF_QO PF05187.13 gi|435851112|ref|YP_007312698.1| - 1.7 8.8 6.0 6.5 6.9 5.8 2.0 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S ApbE PF02424.15 gi|435851113|ref|YP_007312699.1| - 0.0011 18.6 4.9 0.016 14.7 4.6 2.2 1 1 0 1 1 1 1 ApbE family AIM24 PF01987.17 gi|435851114|ref|YP_007312700.1| - 9.3e-38 130.0 0.1 1.1e-37 129.8 0.1 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Thioredoxin_3 PF13192.6 gi|435851115|ref|YP_007312701.1| - 1.9e-12 47.1 0.1 2e-12 46.9 0.1 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|435851115|ref|YP_007312701.1| - 2.4e-08 34.0 0.1 3.2e-08 33.7 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin PF00085.20 gi|435851115|ref|YP_007312701.1| - 0.00028 20.8 0.1 0.00031 20.7 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|435851115|ref|YP_007312701.1| - 0.0012 19.3 0.1 0.0016 18.9 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain DUF836 PF05768.14 gi|435851115|ref|YP_007312701.1| - 0.022 15.1 0.0 0.023 15.1 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_8 PF13905.6 gi|435851115|ref|YP_007312701.1| - 0.043 14.1 0.3 0.43 10.9 0.0 2.3 1 1 0 1 1 1 0 Thioredoxin-like DUF1223 PF06764.11 gi|435851115|ref|YP_007312701.1| - 0.15 12.1 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1223) Pyr_redox_2 PF07992.14 gi|435851116|ref|YP_007312702.1| - 2.1e-48 165.1 2.4 2.4e-48 164.9 2.4 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|435851116|ref|YP_007312702.1| - 1.5e-26 93.4 4.3 7.1e-20 71.5 0.2 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|435851116|ref|YP_007312702.1| - 6.2e-16 58.7 6.7 6.7e-14 52.2 0.3 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|435851116|ref|YP_007312702.1| - 1.7e-08 34.0 3.1 2.3e-05 23.7 0.4 3.9 3 1 1 4 4 4 1 FAD binding domain HI0933_like PF03486.14 gi|435851116|ref|YP_007312702.1| - 3.7e-08 32.5 2.7 0.00037 19.3 0.1 3.2 3 0 0 3 3 3 2 HI0933-like protein DAO PF01266.24 gi|435851116|ref|YP_007312702.1| - 1.5e-07 31.3 4.8 0.0027 17.4 0.9 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|435851116|ref|YP_007312702.1| - 3.1e-06 26.6 1.5 0.00023 20.5 0.2 2.6 3 0 0 3 3 3 1 Thi4 family GIDA PF01134.22 gi|435851116|ref|YP_007312702.1| - 4.6e-06 26.0 13.6 0.013 14.6 0.6 4.3 3 2 2 5 5 5 3 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|435851116|ref|YP_007312702.1| - 6.2e-06 25.8 1.5 1.6e-05 24.5 0.2 2.2 2 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|435851116|ref|YP_007312702.1| - 2.9e-05 23.5 2.5 0.0014 17.9 0.5 2.5 2 1 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|435851116|ref|YP_007312702.1| - 0.00027 21.1 0.3 0.0053 16.9 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|435851116|ref|YP_007312702.1| - 0.0018 18.7 0.4 0.15 12.5 0.1 2.5 2 1 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|435851116|ref|YP_007312702.1| - 0.0022 17.1 1.6 1.1 8.3 0.6 2.3 1 1 1 2 2 2 2 Lycopene cyclase protein K_oxygenase PF13434.6 gi|435851116|ref|YP_007312702.1| - 0.0041 16.3 0.4 0.22 10.6 0.0 2.3 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.21 gi|435851116|ref|YP_007312702.1| - 0.016 14.5 0.1 1.9 7.7 0.1 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain FMO-like PF00743.19 gi|435851116|ref|YP_007312702.1| - 0.042 12.3 0.2 0.12 10.8 0.0 1.8 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like MCRA PF06100.11 gi|435851116|ref|YP_007312702.1| - 0.15 10.8 0.1 0.24 10.2 0.1 1.3 1 0 0 1 1 1 0 MCRA family NAD_binding_9 PF13454.6 gi|435851116|ref|YP_007312702.1| - 0.51 10.3 3.6 4.3 7.3 0.1 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|435851116|ref|YP_007312702.1| - 1.2 7.9 3.7 4 6.2 0.5 2.5 2 1 1 3 3 3 0 Tryptophan halogenase DUF2111 PF09884.9 gi|435851117|ref|YP_007312703.1| - 4.3e-35 119.6 3.0 6.2e-35 119.1 3.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) UNC-50 PF05216.13 gi|435851118|ref|YP_007312704.1| - 0.0068 16.0 0.9 0.0071 15.9 0.9 1.0 1 0 0 1 1 1 1 UNC-50 family DUF5357 PF17310.2 gi|435851118|ref|YP_007312704.1| - 0.011 14.3 0.8 0.012 14.2 0.8 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5357) MgtE PF01769.16 gi|435851118|ref|YP_007312704.1| - 0.11 12.9 3.6 0.11 12.9 3.6 1.0 1 0 0 1 1 1 0 Divalent cation transporter FeoB_associated PF12669.7 gi|435851118|ref|YP_007312704.1| - 0.36 11.3 3.5 3.8 8.0 0.0 2.2 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein Maf PF02545.14 gi|435851119|ref|YP_007312705.1| - 4.9e-54 182.6 0.0 5.5e-54 182.5 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein SMP_LBD PF17047.5 gi|435851119|ref|YP_007312705.1| - 0.013 14.9 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 Synaptotagmin-like mitochondrial-lipid-binding domain YjgF_endoribonc PF14588.6 gi|435851119|ref|YP_007312705.1| - 0.11 12.7 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 YjgF/chorismate_mutase-like, putative endoribonuclease ANTAR PF03861.14 gi|435851120|ref|YP_007312706.1| - 0.037 13.9 0.0 0.052 13.4 0.0 1.3 1 0 0 1 1 1 0 ANTAR domain EF1_GNE PF00736.19 gi|435851121|ref|YP_007312707.1| - 7.1e-20 71.0 0.1 8.2e-20 70.8 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.11 gi|435851122|ref|YP_007312708.1| - 9.8e-05 22.2 5.4 9.8e-05 22.2 5.4 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF1610) zf-CHY PF05495.12 gi|435851122|ref|YP_007312708.1| - 0.0069 16.9 9.1 0.57 10.7 0.2 2.0 1 1 1 2 2 2 2 CHY zinc finger zf-C3HC4_3 PF13920.6 gi|435851122|ref|YP_007312708.1| - 0.013 15.3 7.4 0.042 13.7 0.2 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) C1_2 PF03107.16 gi|435851122|ref|YP_007312708.1| - 0.031 14.6 10.8 0.26 11.6 5.8 2.4 1 1 1 2 2 2 0 C1 domain OrfB_Zn_ribbon PF07282.11 gi|435851122|ref|YP_007312708.1| - 0.032 14.1 10.0 0.064 13.2 1.9 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-UBP PF02148.19 gi|435851122|ref|YP_007312708.1| - 0.043 14.1 1.1 0.043 14.1 1.1 2.0 2 0 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zinc_ribbon_2 PF13240.6 gi|435851122|ref|YP_007312708.1| - 0.046 13.4 2.7 0.046 13.4 2.7 3.6 2 2 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.6 gi|435851122|ref|YP_007312708.1| - 0.075 12.7 13.3 4.1 7.1 0.1 2.9 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Rhodanese_C PF12368.8 gi|435851122|ref|YP_007312708.1| - 0.085 13.2 8.1 0.12 12.8 8.1 1.2 1 0 0 1 1 1 0 Rhodanase C-terminal zf-RRN7 PF11781.8 gi|435851122|ref|YP_007312708.1| - 0.1 12.3 0.3 0.1 12.3 0.3 3.7 4 0 0 4 4 4 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zinc-ribbons_6 PF07191.12 gi|435851122|ref|YP_007312708.1| - 0.11 12.5 9.2 0.24 11.4 9.2 1.5 1 1 0 1 1 1 0 zinc-ribbons zf-HYPF PF07503.12 gi|435851122|ref|YP_007312708.1| - 0.14 12.0 12.0 1 9.2 0.1 2.3 2 0 0 2 2 2 0 HypF finger zf-H2C2_2 PF13465.6 gi|435851122|ref|YP_007312708.1| - 0.32 11.5 10.6 1.7 9.2 0.7 3.4 3 1 1 4 4 4 0 Zinc-finger double domain Rubredoxin_2 PF18073.1 gi|435851122|ref|YP_007312708.1| - 0.35 10.6 0.5 0.35 10.6 0.5 4.0 4 0 0 4 4 4 0 Rubredoxin metal binding domain Zn_Tnp_IS91 PF14319.6 gi|435851122|ref|YP_007312708.1| - 0.36 10.9 9.3 0.7 10.0 9.3 1.5 1 1 0 1 1 1 0 Transposase zinc-binding domain Zn-ribbon_8 PF09723.10 gi|435851122|ref|YP_007312708.1| - 0.96 9.6 14.8 0.41 10.8 4.0 2.9 1 1 0 2 2 2 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|435851122|ref|YP_007312708.1| - 1.2 8.9 11.1 3.7 7.3 0.0 3.4 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|435851122|ref|YP_007312708.1| - 1.4 8.4 17.3 1.5 8.3 0.2 3.8 3 1 1 4 4 4 0 zinc-ribbon domain tRNA-synt_1g PF09334.11 gi|435851122|ref|YP_007312708.1| - 1.5 7.5 2.8 1.6 7.4 2.8 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (M) zf-C2H2_6 PF13912.6 gi|435851122|ref|YP_007312708.1| - 1.6 8.8 7.2 5 7.2 0.0 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.12 gi|435851122|ref|YP_007312708.1| - 2 8.0 14.8 2.8 7.5 0.1 3.2 2 1 0 2 2 2 0 TFIIB zinc-binding zf-trcl PF13451.6 gi|435851122|ref|YP_007312708.1| - 2.1 8.3 14.4 8.7 6.3 2.3 3.8 2 1 2 4 4 4 0 Probable zinc-ribbon domain zf-C2HC5 PF06221.13 gi|435851122|ref|YP_007312708.1| - 2.1 8.4 12.1 2.4 8.2 6.2 2.7 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type Zn_ribbon_SprT PF17283.2 gi|435851122|ref|YP_007312708.1| - 2.3 8.2 14.9 4 7.4 9.3 3.1 2 1 0 2 2 2 0 SprT-like zinc ribbon domain zf-HIT PF04438.16 gi|435851122|ref|YP_007312708.1| - 2.3 8.1 15.9 0.45 10.4 5.0 2.9 1 1 0 2 2 2 0 HIT zinc finger zf-Mss51 PF13824.6 gi|435851122|ref|YP_007312708.1| - 3.2 7.9 12.7 1.9e+02 2.2 0.2 2.7 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 PolC_DP2 PF03833.13 gi|435851122|ref|YP_007312708.1| - 3.2 5.5 5.8 3.5 5.4 5.8 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Nudix_N_2 PF14803.6 gi|435851122|ref|YP_007312708.1| - 3.7 7.5 13.8 13 5.8 2.7 3.3 1 1 1 2 2 2 0 Nudix N-terminal zf_UBZ PF18439.1 gi|435851122|ref|YP_007312708.1| - 3.8 7.2 11.3 3.2 7.4 0.2 3.1 4 0 0 4 4 3 0 Ubiquitin-Binding Zinc Finger Lar_restr_allev PF14354.6 gi|435851122|ref|YP_007312708.1| - 4.3 7.8 13.3 39 4.7 9.9 2.3 2 1 0 2 2 2 0 Restriction alleviation protein Lar zf-AN1 PF01428.16 gi|435851122|ref|YP_007312708.1| - 4.5 7.5 13.4 3.8 7.7 4.2 2.8 2 1 1 3 3 3 0 AN1-like Zinc finger DUF4428 PF14471.6 gi|435851122|ref|YP_007312708.1| - 4.6 7.2 8.1 0.24 11.4 2.8 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF4428) NMD3 PF04981.13 gi|435851122|ref|YP_007312708.1| - 4.9 6.5 8.3 5.3 6.4 8.3 1.1 1 0 0 1 1 1 0 NMD3 family Elf1 PF05129.13 gi|435851122|ref|YP_007312708.1| - 5.7 7.1 11.0 6.3 6.9 4.9 2.3 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like YhfH PF14149.6 gi|435851122|ref|YP_007312708.1| - 7.5 6.6 15.1 2.5 8.1 0.1 3.4 2 1 1 3 3 2 0 YhfH-like protein AA_kinase PF00696.28 gi|435851123|ref|YP_007312709.1| - 1.5e-10 41.1 0.0 2.2e-05 24.2 0.1 2.2 1 1 1 2 2 2 2 Amino acid kinase family Hydantoinase_A PF01968.18 gi|435851124|ref|YP_007312710.1| - 2.2e-30 105.9 1.9 5.1e-30 104.7 0.4 1.9 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|435851124|ref|YP_007312710.1| - 0.0017 17.1 1.1 0.036 12.7 0.0 2.5 3 0 0 3 3 3 1 MutL protein AAA_lid_10 PF17872.1 gi|435851124|ref|YP_007312710.1| - 0.025 14.7 0.4 5.1 7.3 0.0 2.9 3 0 0 3 3 3 0 AAA lid domain Glycos_transf_1 PF00534.20 gi|435851124|ref|YP_007312710.1| - 0.033 13.7 0.1 0.056 13.0 0.1 1.3 1 0 0 1 1 1 0 Glycosyl transferases group 1 DUF4954 PF16314.5 gi|435851124|ref|YP_007312710.1| - 0.1 10.7 0.0 0.11 10.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Nbl1_Borealin_N PF10444.9 gi|435851124|ref|YP_007312710.1| - 0.13 11.9 1.0 0.63 9.7 1.1 1.9 2 0 0 2 2 2 0 Nbl1 / Borealin N terminal ATP-grasp_3 PF02655.14 gi|435851125|ref|YP_007312711.1| - 3.9e-34 118.0 0.0 5.4e-34 117.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain preATP-grasp_3 PF18301.1 gi|435851125|ref|YP_007312711.1| - 0.00013 22.1 0.0 0.00043 20.5 0.0 1.9 2 0 0 2 2 2 1 pre ATP-grasp 3 domain ATPgrasp_Ter PF15632.6 gi|435851125|ref|YP_007312711.1| - 0.0026 17.5 0.0 0.0056 16.4 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|435851125|ref|YP_007312711.1| - 0.0045 16.5 0.0 0.0064 16.0 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_ST PF14397.6 gi|435851125|ref|YP_007312711.1| - 0.061 12.6 0.0 0.79 8.9 0.0 2.0 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp RimK PF08443.11 gi|435851125|ref|YP_007312711.1| - 0.089 12.4 0.0 2.6 7.6 0.0 2.2 2 0 0 2 2 2 0 RimK-like ATP-grasp domain TcpE PF12648.7 gi|435851126|ref|YP_007312712.1| - 8.7 6.9 10.7 10 6.7 3.6 2.1 2 0 0 2 2 2 0 TcpE family GrpE PF01025.19 gi|435851127|ref|YP_007312713.1| - 1.7e-56 190.4 3.6 2.1e-56 190.2 3.6 1.0 1 0 0 1 1 1 1 GrpE PRORP PF16953.5 gi|435851127|ref|YP_007312713.1| - 0.042 13.4 0.3 0.054 13.0 0.3 1.1 1 0 0 1 1 1 0 Protein-only RNase P Csm1_N PF18504.1 gi|435851127|ref|YP_007312713.1| - 0.059 13.7 0.6 0.059 13.7 0.6 1.7 2 0 0 2 2 2 0 Csm1 N-terminal domain PKcGMP_CC PF16808.5 gi|435851127|ref|YP_007312713.1| - 0.094 12.6 1.5 0.23 11.4 1.5 1.6 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase TMF_TATA_bd PF12325.8 gi|435851127|ref|YP_007312713.1| - 0.12 12.6 3.5 0.8 9.9 3.5 2.1 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding HSP70 PF00012.20 gi|435851128|ref|YP_007312714.1| - 3.3e-251 834.7 13.9 4e-222 738.6 8.0 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.13 gi|435851128|ref|YP_007312714.1| - 4.2e-18 65.2 2.0 4.2e-18 65.2 2.0 2.4 2 1 0 2 2 2 1 MreB/Mbl protein FtsA PF14450.6 gi|435851128|ref|YP_007312714.1| - 0.00021 21.7 1.7 0.46 10.9 0.0 3.6 3 2 0 3 3 3 2 Cell division protein FtsA FGGY_C PF02782.16 gi|435851128|ref|YP_007312714.1| - 0.0052 16.5 0.0 0.012 15.3 0.0 1.6 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain DUF3347 PF11827.8 gi|435851128|ref|YP_007312714.1| - 0.018 15.2 8.6 0.047 13.9 6.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3347) DUF1090 PF06476.12 gi|435851128|ref|YP_007312714.1| - 1.1 9.3 10.4 1.9 8.7 9.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1090) Vfa1 PF08432.10 gi|435851128|ref|YP_007312714.1| - 3.6 7.9 7.9 5.9 7.2 7.9 1.3 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 SMBP PF16785.5 gi|435851128|ref|YP_007312714.1| - 3.6 7.9 8.4 1 9.6 4.7 2.1 2 0 0 2 2 2 0 Small metal-binding protein cwf21 PF08312.12 gi|435851128|ref|YP_007312714.1| - 7.9 6.7 8.0 15 5.8 0.2 3.8 4 0 0 4 4 4 0 cwf21 domain DnaJ_C PF01556.18 gi|435851129|ref|YP_007312715.1| - 8.5e-41 139.5 0.0 1.1e-40 139.1 0.0 1.1 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|435851129|ref|YP_007312715.1| - 2.6e-29 101.1 4.6 2.6e-29 101.1 4.6 1.8 2 0 0 2 2 2 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|435851129|ref|YP_007312715.1| - 1.6e-14 54.0 14.6 3e-14 53.1 14.6 1.5 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|435851129|ref|YP_007312715.1| - 4.7e-06 26.5 16.2 0.0057 16.6 2.8 2.7 2 1 1 3 3 3 3 Tryptophan RNA-binding attenuator protein inhibitory protein Prim_Zn_Ribbon PF08273.12 gi|435851129|ref|YP_007312715.1| - 0.0053 17.0 12.1 0.025 14.9 1.0 3.7 3 0 0 3 3 3 2 Zinc-binding domain of primase-helicase HypA PF01155.19 gi|435851129|ref|YP_007312715.1| - 0.063 13.3 8.5 0.95 9.5 0.6 2.4 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|435851129|ref|YP_007312715.1| - 0.072 12.8 2.5 0.59 9.8 0.4 2.2 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 DUF1356 PF07092.12 gi|435851129|ref|YP_007312715.1| - 0.17 11.2 9.3 2.1 7.5 2.4 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1356) zf-RING_10 PF16685.5 gi|435851129|ref|YP_007312715.1| - 0.24 11.5 2.8 0.25 11.5 1.4 1.7 1 1 1 2 2 2 0 zinc RING finger of MSL2 DZR PF12773.7 gi|435851129|ref|YP_007312715.1| - 0.65 10.1 11.5 45 4.2 11.5 2.3 1 1 0 1 1 1 0 Double zinc ribbon DUF5351 PF17302.2 gi|435851129|ref|YP_007312715.1| - 4.1 7.7 21.1 7.9 6.8 0.3 4.4 4 0 0 4 4 4 0 Family of unknown function (DUF5351) zf-RING_5 PF14634.6 gi|435851129|ref|YP_007312715.1| - 5.7 7.0 10.6 11 6.1 2.3 2.3 2 0 0 2 2 2 0 zinc-RING finger domain TrkA_N PF02254.18 gi|435851130|ref|YP_007312716.1| - 1.9e-48 163.6 8.2 2.3e-26 92.4 0.4 2.4 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|435851130|ref|YP_007312716.1| - 1.4e-32 111.3 1.6 7.6e-16 57.7 0.1 3.1 3 0 0 3 3 3 2 TrkA-C domain Shikimate_DH PF01488.20 gi|435851130|ref|YP_007312716.1| - 9.4e-11 41.9 5.1 4.3e-05 23.6 1.2 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|435851130|ref|YP_007312716.1| - 1.9e-09 37.9 5.0 0.0006 20.2 0.6 2.8 3 0 0 3 3 2 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|435851130|ref|YP_007312716.1| - 2.6e-08 33.4 6.6 4.4e-05 22.9 0.1 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|435851130|ref|YP_007312716.1| - 6.4e-08 32.9 5.4 0.00093 19.5 0.9 3.0 3 0 0 3 3 3 2 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|435851130|ref|YP_007312716.1| - 8.1e-07 29.5 6.1 0.013 16.1 0.3 3.5 4 1 0 4 4 2 2 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|435851130|ref|YP_007312716.1| - 2e-05 24.6 0.2 0.05 13.6 0.0 2.7 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_2 PF07992.14 gi|435851130|ref|YP_007312716.1| - 3.6e-05 23.1 2.5 0.016 14.5 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.6 gi|435851130|ref|YP_007312716.1| - 0.00027 20.9 1.7 0.012 15.5 0.4 2.3 2 0 0 2 2 2 1 NAD(P)H-binding ApbA PF02558.16 gi|435851130|ref|YP_007312716.1| - 0.00075 19.2 0.2 0.99 9.0 0.0 2.4 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|435851130|ref|YP_007312716.1| - 0.00096 19.7 2.7 0.65 10.6 0.4 3.0 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|435851130|ref|YP_007312716.1| - 0.0017 18.0 1.8 0.17 11.4 0.2 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|435851130|ref|YP_007312716.1| - 0.0022 18.2 0.7 0.023 14.9 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|435851130|ref|YP_007312716.1| - 0.0029 16.9 0.1 0.72 9.0 0.0 2.4 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|435851130|ref|YP_007312716.1| - 0.0036 16.1 0.3 0.72 8.5 0.1 2.8 3 0 0 3 3 3 1 HI0933-like protein NmrA PF05368.13 gi|435851130|ref|YP_007312716.1| - 0.0037 16.8 3.6 0.021 14.4 0.9 2.2 2 0 0 2 2 2 1 NmrA-like family 3HCDH_N PF02737.18 gi|435851130|ref|YP_007312716.1| - 0.0052 16.7 4.9 0.73 9.7 0.1 2.7 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|435851130|ref|YP_007312716.1| - 0.018 15.5 0.0 3.5 8.1 0.0 2.5 2 0 0 2 2 2 0 XdhC Rossmann domain ADH_zinc_N PF00107.26 gi|435851130|ref|YP_007312716.1| - 0.023 14.7 3.7 0.29 11.1 0.1 2.9 3 0 0 3 3 3 0 Zinc-binding dehydrogenase Hen1_Lam_C PF18441.1 gi|435851130|ref|YP_007312716.1| - 0.035 13.9 0.5 0.39 10.6 0.0 2.4 2 0 0 2 2 2 0 Hen1 La-motif C-terminal domain GARS_A PF01071.19 gi|435851130|ref|YP_007312716.1| - 0.053 13.3 0.5 0.15 11.8 0.5 1.7 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Trp_halogenase PF04820.14 gi|435851130|ref|YP_007312716.1| - 0.073 11.9 0.3 0.8 8.5 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase YflT PF11181.8 gi|435851130|ref|YP_007312716.1| - 0.13 12.8 1.3 11 6.6 0.0 3.2 3 0 0 3 3 3 0 Heat induced stress protein YflT Ribosom_S12_S23 PF00164.25 gi|435851130|ref|YP_007312716.1| - 0.14 11.8 0.6 1.4 8.6 0.1 2.5 2 0 0 2 2 2 0 Ribosomal protein S12/S23 DUF104 PF01954.16 gi|435851130|ref|YP_007312716.1| - 0.19 12.2 1.1 13 6.3 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function DUF104 TrkH PF02386.16 gi|435851131|ref|YP_007312717.1| - 5.7e-66 223.0 17.8 3e-35 121.6 6.2 2.0 2 0 0 2 2 2 2 Cation transport protein FAD_binding_3 PF01494.19 gi|435851132|ref|YP_007312718.1| - 3e-16 59.6 0.7 6.4e-08 32.2 0.1 3.0 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|435851132|ref|YP_007312718.1| - 9.8e-11 41.4 0.7 3.5e-07 29.7 0.1 2.3 1 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|435851132|ref|YP_007312718.1| - 3.9e-09 36.4 2.2 4.7e-08 32.8 2.2 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|435851132|ref|YP_007312718.1| - 1.4e-07 30.6 0.3 2.4e-07 29.8 0.3 1.3 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|435851132|ref|YP_007312718.1| - 5.6e-07 29.7 0.0 1.2e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|435851132|ref|YP_007312718.1| - 7e-07 28.8 1.0 8.6e-07 28.5 0.2 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|435851132|ref|YP_007312718.1| - 7.1e-07 28.6 0.1 0.00049 19.3 0.3 2.4 2 1 0 2 2 2 2 Lycopene cyclase protein GIDA PF01134.22 gi|435851132|ref|YP_007312718.1| - 1.4e-05 24.3 1.7 2.7e-05 23.4 1.7 1.5 1 1 0 1 1 1 1 Glucose inhibited division protein A DAO PF01266.24 gi|435851132|ref|YP_007312718.1| - 2.1e-05 24.3 0.4 0.00016 21.4 0.3 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|435851132|ref|YP_007312718.1| - 3.7e-05 22.8 0.0 0.036 12.9 0.1 2.2 2 1 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.17 gi|435851132|ref|YP_007312718.1| - 0.00011 21.6 0.8 0.00033 20.0 0.1 2.0 2 1 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 gi|435851132|ref|YP_007312718.1| - 0.0018 17.6 0.2 0.0034 16.7 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|435851132|ref|YP_007312718.1| - 0.038 13.9 0.0 0.083 12.8 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|435851132|ref|YP_007312718.1| - 0.15 12.6 0.1 0.15 12.6 0.1 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.10 gi|435851132|ref|YP_007312718.1| - 2.8 6.9 4.3 0.71 8.9 0.1 2.0 3 0 0 3 3 3 0 Squalene epoxidase Fer4 PF00037.27 gi|435851133|ref|YP_007312719.1| - 5.3e-13 48.2 15.7 2.5e-07 30.2 4.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435851133|ref|YP_007312719.1| - 9.4e-10 38.9 23.8 2.6e-07 31.1 12.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435851133|ref|YP_007312719.1| - 7.8e-09 36.3 9.2 7.4e-05 23.6 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|435851133|ref|YP_007312719.1| - 7.7e-08 32.4 20.6 3.2e-06 27.2 10.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435851133|ref|YP_007312719.1| - 8.5e-08 32.0 12.6 7.1e-05 22.7 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|435851133|ref|YP_007312719.1| - 3.7e-07 29.8 11.0 0.00023 21.1 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435851133|ref|YP_007312719.1| - 2.3e-06 27.6 11.5 9.3e-05 22.5 12.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435851133|ref|YP_007312719.1| - 6e-06 26.3 11.6 2.4e-05 24.4 11.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|435851133|ref|YP_007312719.1| - 0.00018 22.0 8.7 0.03 14.9 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|435851133|ref|YP_007312719.1| - 0.0011 19.4 13.3 0.11 13.0 2.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435851133|ref|YP_007312719.1| - 0.0018 19.0 20.8 0.058 14.4 5.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|435851133|ref|YP_007312719.1| - 0.014 15.9 13.3 0.33 11.5 3.0 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Desulfoferrod_N PF06397.12 gi|435851133|ref|YP_007312719.1| - 0.015 14.9 3.7 0.015 14.9 3.7 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Fer4_4 PF12800.7 gi|435851133|ref|YP_007312719.1| - 0.02 15.4 12.8 0.49 11.0 2.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|435851133|ref|YP_007312719.1| - 0.023 14.9 10.4 0.38 11.0 10.1 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|435851133|ref|YP_007312719.1| - 0.076 13.8 12.4 0.16 12.7 0.5 3.0 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_19 PF06902.11 gi|435851133|ref|YP_007312719.1| - 1 9.5 8.6 1.1 9.4 0.7 3.1 2 2 1 3 3 3 0 Divergent 4Fe-4S mono-cluster CofC PF01983.16 gi|435851134|ref|YP_007312720.1| - 1.5e-47 161.6 0.1 1.8e-47 161.4 0.1 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|435851134|ref|YP_007312720.1| - 0.00015 22.2 0.0 0.00019 21.8 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Radical_SAM PF04055.21 gi|435851135|ref|YP_007312721.1| - 5e-17 62.8 0.1 7.3e-17 62.2 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer2 PF00111.27 gi|435851135|ref|YP_007312721.1| - 0.21 11.6 0.7 0.63 10.0 0.2 2.0 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Radical_SAM PF04055.21 gi|435851136|ref|YP_007312722.1| - 3.3e-16 60.1 0.1 5.3e-16 59.4 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.21 gi|435851137|ref|YP_007312723.1| - 8.3e-15 55.5 0.1 1.5e-14 54.7 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily NAD_binding_8 PF13450.6 gi|435851138|ref|YP_007312724.1| - 1.2e-11 44.6 0.1 3.1e-11 43.4 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|435851138|ref|YP_007312724.1| - 2.6e-10 40.2 0.0 4.1e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase FAD_binding_2 PF00890.24 gi|435851138|ref|YP_007312724.1| - 1.5e-07 30.9 0.5 0.00033 19.9 0.1 3.0 3 0 0 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|435851138|ref|YP_007312724.1| - 4.8e-07 29.3 0.2 0.0027 17.0 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|435851138|ref|YP_007312724.1| - 7.7e-05 21.6 0.3 0.011 14.5 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|435851138|ref|YP_007312724.1| - 0.00014 21.5 0.3 0.0026 17.4 0.1 2.3 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|435851138|ref|YP_007312724.1| - 0.0031 16.8 0.7 0.0051 16.1 0.7 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|435851138|ref|YP_007312724.1| - 0.0067 17.0 0.3 0.027 15.0 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.18 gi|435851138|ref|YP_007312724.1| - 0.019 13.5 0.0 0.7 8.3 0.0 2.1 2 0 0 2 2 2 0 GDP dissociation inhibitor FAD_oxidored PF12831.7 gi|435851138|ref|YP_007312724.1| - 0.035 13.4 0.1 0.06 12.7 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase GIDA PF01134.22 gi|435851138|ref|YP_007312724.1| - 0.076 12.1 1.5 0.67 9.0 0.1 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A ApbA PF02558.16 gi|435851138|ref|YP_007312724.1| - 0.083 12.5 0.2 0.15 11.7 0.2 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.17 gi|435851138|ref|YP_007312724.1| - 0.1 11.8 0.1 0.24 10.6 0.1 1.6 1 0 0 1 1 1 0 Thi4 family GMC_oxred_N PF00732.19 gi|435851138|ref|YP_007312724.1| - 0.14 11.5 0.0 0.63 9.4 0.0 1.8 2 0 0 2 2 2 0 GMC oxidoreductase Fer4 PF00037.27 gi|435851139|ref|YP_007312725.1| - 1.1e-12 47.2 16.0 2.5e-07 30.2 3.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|435851139|ref|YP_007312725.1| - 5e-11 42.2 11.2 1e-06 28.7 2.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435851139|ref|YP_007312725.1| - 4.1e-10 39.7 26.9 1.5e-06 28.3 15.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435851139|ref|YP_007312725.1| - 8.2e-09 36.3 12.9 0.00017 22.5 2.0 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|435851139|ref|YP_007312725.1| - 2.2e-08 34.6 13.9 0.00038 21.0 3.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435851139|ref|YP_007312725.1| - 2.6e-08 33.6 15.4 0.00012 22.0 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|435851139|ref|YP_007312725.1| - 4.1e-08 32.8 11.6 0.00021 21.2 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435851139|ref|YP_007312725.1| - 1.2e-07 31.7 13.4 4.3e-05 23.5 2.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435851139|ref|YP_007312725.1| - 2.2e-07 30.9 13.9 5.1e-07 29.7 13.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435851139|ref|YP_007312725.1| - 1.8e-06 28.4 9.5 0.0055 17.2 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435851139|ref|YP_007312725.1| - 0.00054 20.7 18.0 0.0073 17.2 6.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|435851139|ref|YP_007312725.1| - 0.00075 20.0 13.8 0.0097 16.4 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|435851139|ref|YP_007312725.1| - 0.0015 18.7 12.1 0.012 15.8 12.1 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|435851139|ref|YP_007312725.1| - 0.0021 18.5 15.2 0.073 13.5 4.1 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|435851139|ref|YP_007312725.1| - 0.0071 17.2 12.3 0.018 15.9 2.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain c-SKI_SMAD_bind PF08782.10 gi|435851139|ref|YP_007312725.1| - 6.3 7.1 11.8 8 6.8 1.4 2.0 1 1 1 2 2 2 0 c-SKI Smad4 binding domain Fer4_15 PF13459.6 gi|435851139|ref|YP_007312725.1| - 6.4 7.6 16.4 1.6 9.5 4.8 2.6 2 2 0 2 2 2 0 4Fe-4S single cluster domain NucS PF01939.16 gi|435851140|ref|YP_007312726.1| - 2.5e-09 36.8 1.2 3.1e-09 36.5 0.1 1.6 2 0 0 2 2 2 1 Endonuclease NucS PDDEXK_9 PF08011.11 gi|435851140|ref|YP_007312726.1| - 0.001 18.9 0.1 0.0026 17.6 0.1 1.7 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily UPF0102 PF02021.17 gi|435851140|ref|YP_007312726.1| - 0.05 13.8 0.1 0.098 12.9 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 MTES_1575 PF18741.1 gi|435851140|ref|YP_007312726.1| - 0.051 13.7 0.2 0.14 12.3 0.0 1.9 2 0 0 2 2 2 0 REase_MTES_1575 SfsA PF03749.13 gi|435851140|ref|YP_007312726.1| - 0.13 12.2 0.4 0.35 10.8 0.1 1.8 2 0 0 2 2 2 0 Sugar fermentation stimulation protein RE domain NUDIX PF00293.28 gi|435851141|ref|YP_007312727.1| - 9.7e-08 32.1 0.0 1e-07 32.0 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Na_Ca_ex PF01699.24 gi|435851142|ref|YP_007312728.1| - 7.7e-57 191.5 40.2 2.1e-28 99.2 14.8 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein RAMP4 PF06624.12 gi|435851142|ref|YP_007312728.1| - 0.16 12.1 0.0 0.16 12.1 0.0 2.9 3 0 0 3 3 3 0 Ribosome associated membrane protein RAMP4 DUF4131 PF13567.6 gi|435851142|ref|YP_007312728.1| - 2.7 7.6 10.6 0.32 10.6 0.1 3.1 3 1 0 3 3 3 0 Domain of unknown function (DUF4131) FKBP_C PF00254.28 gi|435851144|ref|YP_007312730.1| - 1.4e-10 41.4 0.1 7.9e-10 38.9 0.1 2.2 1 1 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|435851144|ref|YP_007312730.1| - 8.5e-05 22.6 0.0 0.00021 21.3 0.0 1.7 1 0 0 1 1 1 1 FKBP26_C-terminal MCPsignal PF00015.21 gi|435851145|ref|YP_007312731.1| - 4e-50 170.0 55.4 3.6e-49 166.9 24.3 4.6 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 gi|435851145|ref|YP_007312731.1| - 1.1e-22 81.1 0.6 1.1e-22 81.1 0.6 2.7 2 1 1 3 3 3 1 Cache domain DUF948 PF06103.11 gi|435851145|ref|YP_007312731.1| - 0.0094 16.2 36.6 0.27 11.5 1.8 5.6 3 2 2 5 5 5 4 Bacterial protein of unknown function (DUF948) DUF2304 PF10066.9 gi|435851145|ref|YP_007312731.1| - 0.01 16.0 1.5 0.4 10.9 0.2 2.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) sCache_2 PF17200.4 gi|435851145|ref|YP_007312731.1| - 0.013 15.4 0.0 0.013 15.4 0.0 3.0 3 0 0 3 3 3 0 Single Cache domain 2 HAMP PF00672.25 gi|435851145|ref|YP_007312731.1| - 0.026 14.9 1.7 0.42 11.0 0.0 3.9 4 0 0 4 4 3 0 HAMP domain dCache_2 PF08269.11 gi|435851145|ref|YP_007312731.1| - 0.029 13.6 0.0 0.029 13.6 0.0 3.0 3 0 0 3 3 3 0 Cache domain Spc7 PF08317.11 gi|435851145|ref|YP_007312731.1| - 0.18 10.7 18.3 0.5 9.2 6.2 2.8 3 1 0 3 3 3 0 Spc7 kinetochore protein HOASN PF14515.6 gi|435851145|ref|YP_007312731.1| - 0.23 11.8 9.0 0.46 10.9 3.1 3.1 2 0 0 2 2 2 0 Haem-oxygenase-associated N-terminal helices MIP-T3_C PF17749.1 gi|435851145|ref|YP_007312731.1| - 1.3 8.9 14.1 0.65 9.9 4.1 3.0 2 1 0 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region Serine_rich PF08824.10 gi|435851145|ref|YP_007312731.1| - 2.3 8.2 10.3 0.66 10.0 2.1 2.6 2 0 0 2 2 2 0 Serine rich protein interaction domain TMPIT PF07851.13 gi|435851145|ref|YP_007312731.1| - 2.6 7.2 13.2 3.1 6.9 3.2 2.5 2 0 0 2 2 2 0 TMPIT-like protein GAS PF13851.6 gi|435851145|ref|YP_007312731.1| - 2.7 7.3 10.1 0.63 9.4 0.8 3.1 2 1 1 3 3 3 0 Growth-arrest specific micro-tubule binding Laminin_II PF06009.12 gi|435851145|ref|YP_007312731.1| - 2.8 8.0 32.2 1.1 9.3 3.9 4.2 2 2 2 4 4 4 0 Laminin Domain II DUF1664 PF07889.12 gi|435851145|ref|YP_007312731.1| - 4 7.5 26.8 0.71 9.9 3.1 4.5 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) SSF PF00474.17 gi|435851147|ref|YP_007312733.1| - 4e-60 203.8 43.1 5.5e-60 203.3 43.1 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family SSF PF00474.17 gi|435851149|ref|YP_007312735.1| - 1.1e-64 218.9 41.3 1.5e-64 218.4 41.3 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family ATP19 PF11022.8 gi|435851149|ref|YP_007312735.1| - 3.6 8.0 5.9 1.1 9.6 0.2 3.2 3 0 0 3 3 3 0 ATP synthase subunit K Lactamase_B_3 PF13483.6 gi|435851150|ref|YP_007312736.1| - 2.1e-27 96.0 0.0 2.6e-27 95.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|435851150|ref|YP_007312736.1| - 3.8e-24 85.3 0.3 4.8e-24 85.0 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|435851150|ref|YP_007312736.1| - 4.1e-09 36.7 0.6 6.6e-09 36.0 0.6 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily AP_endonuc_2 PF01261.24 gi|435851150|ref|YP_007312736.1| - 0.055 12.9 0.2 0.44 9.9 0.2 2.0 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF2117 PF09890.9 gi|435851151|ref|YP_007312737.1| - 7.5e-75 251.0 1.5 7.5e-75 251.0 1.5 1.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2117) NAD_kinase PF01513.21 gi|435851151|ref|YP_007312737.1| - 0.00077 18.7 0.3 0.0014 17.9 0.3 1.4 1 0 0 1 1 1 1 ATP-NAD kinase HTH_34 PF13601.6 gi|435851152|ref|YP_007312738.1| - 0.0038 17.4 0.0 0.0064 16.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain PBECR3 PF18812.1 gi|435851152|ref|YP_007312738.1| - 0.011 15.7 1.3 0.014 15.3 1.3 1.2 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 PadR PF03551.14 gi|435851152|ref|YP_007312738.1| - 0.014 15.3 0.0 0.037 14.0 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TFIIE_alpha PF02002.17 gi|435851152|ref|YP_007312738.1| - 0.041 13.7 0.3 0.053 13.4 0.3 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit TrmB PF01978.19 gi|435851152|ref|YP_007312738.1| - 0.06 13.2 0.0 0.089 12.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DDE_Tnp_ISL3 PF01610.17 gi|435851154|ref|YP_007312740.1| - 2.8e-67 227.0 5.0 4e-67 226.4 5.0 1.2 1 0 0 1 1 1 1 Transposase HTH_Tnp_ISL3 PF13542.6 gi|435851154|ref|YP_007312740.1| - 3.3e-15 55.2 0.0 6.2e-15 54.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 gi|435851154|ref|YP_007312740.1| - 1.2e-11 45.1 2.0 2.5e-11 44.0 2.0 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 UPF0236 PF06782.11 gi|435851154|ref|YP_007312740.1| - 0.0022 16.7 0.3 0.015 13.9 0.2 2.3 2 1 0 2 2 2 1 Uncharacterised protein family (UPF0236) HTH_23 PF13384.6 gi|435851154|ref|YP_007312740.1| - 0.0033 17.2 0.1 0.013 15.3 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain Arc_C PF18162.1 gi|435851154|ref|YP_007312740.1| - 0.095 12.6 0.1 8.6 6.3 0.0 2.7 1 1 1 2 2 2 0 Arc C-lobe NYN PF01936.18 gi|435851155|ref|YP_007312741.1| - 2.3e-24 86.6 0.0 3.1e-24 86.1 0.0 1.1 1 0 0 1 1 1 1 NYN domain Peptidase_C70 PF12385.8 gi|435851155|ref|YP_007312741.1| - 0.035 14.1 0.0 0.053 13.5 0.0 1.2 1 0 0 1 1 1 0 Papain-like cysteine protease AvrRpt2 DUF4479 PF14794.6 gi|435851155|ref|YP_007312741.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) Vault PF01505.18 gi|435851156|ref|YP_007312742.1| - 0.016 15.4 1.8 0.3 11.3 0.0 2.5 3 0 0 3 3 3 0 Major Vault Protein repeat domain Rhomboid PF01694.22 gi|435851157|ref|YP_007312743.1| - 7e-37 126.7 15.9 7e-37 126.7 15.9 1.5 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.16 gi|435851157|ref|YP_007312743.1| - 8.4e-14 51.5 5.8 1.3e-13 50.8 5.8 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.10 gi|435851157|ref|YP_007312743.1| - 0.00033 21.2 1.1 0.00033 21.2 1.1 2.7 2 1 1 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) zf-FCS PF06467.14 gi|435851157|ref|YP_007312743.1| - 1.6 8.7 6.2 9.1 6.3 0.2 2.4 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif Prismane PF03063.20 gi|435851158|ref|YP_007312744.1| - 5.3e-113 378.4 5.8 4.9e-97 325.8 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_9 PF13187.6 gi|435851158|ref|YP_007312744.1| - 2.8e-07 30.6 6.0 2.8e-07 30.6 6.0 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435851158|ref|YP_007312744.1| - 1e-06 29.6 4.9 0.01 16.8 0.1 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|435851158|ref|YP_007312744.1| - 2.4e-06 28.0 9.2 2.4e-06 28.0 9.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435851158|ref|YP_007312744.1| - 1.1e-05 25.4 7.4 1.1e-05 25.4 7.4 2.4 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435851158|ref|YP_007312744.1| - 1.5e-05 25.4 17.2 0.0028 18.2 0.3 3.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|435851158|ref|YP_007312744.1| - 5.3e-05 22.8 24.8 0.00042 20.0 2.8 3.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435851158|ref|YP_007312744.1| - 0.0018 18.4 11.9 0.0018 18.4 11.9 3.2 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|435851158|ref|YP_007312744.1| - 0.0027 18.1 12.3 0.0027 18.1 12.3 2.9 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435851158|ref|YP_007312744.1| - 0.0036 17.3 2.7 0.0036 17.3 2.7 3.0 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|435851158|ref|YP_007312744.1| - 0.009 16.2 8.7 0.72 10.1 0.6 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435851158|ref|YP_007312744.1| - 0.011 16.1 1.2 0.011 16.1 1.2 3.4 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|435851158|ref|YP_007312744.1| - 0.041 14.0 26.2 0.031 14.4 3.4 3.8 3 0 0 3 3 3 0 4Fe-4S binding domain Glyco_transf_28 PF03033.20 gi|435851158|ref|YP_007312744.1| - 0.092 12.8 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain Fer4_13 PF13370.6 gi|435851158|ref|YP_007312744.1| - 9.6 6.8 13.0 16 6.1 1.6 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CO_dh PF02552.16 gi|435851159|ref|YP_007312745.1| - 1.7e-31 109.3 0.0 2e-31 109.1 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.22 gi|435851159|ref|YP_007312745.1| - 0.0013 18.5 0.0 0.0019 18.0 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CdhC PF03598.15 gi|435851160|ref|YP_007312746.1| - 1.6e-63 213.2 0.3 2.3e-63 212.7 0.3 1.2 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CbiA PF01656.23 gi|435851161|ref|YP_007312747.1| - 3.4e-17 62.7 0.0 6.9e-17 61.7 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|435851161|ref|YP_007312747.1| - 1.1e-14 54.8 0.0 1.7e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|435851161|ref|YP_007312747.1| - 6.1e-12 45.5 0.3 1.6e-11 44.2 0.3 1.6 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|435851161|ref|YP_007312747.1| - 1e-09 38.3 0.9 1.3e-08 34.6 0.9 2.3 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|435851161|ref|YP_007312747.1| - 2.2e-07 30.4 1.0 1.4e-06 27.8 1.0 2.3 1 1 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|435851161|ref|YP_007312747.1| - 1.6e-06 27.8 0.1 1.5e-05 24.6 0.1 2.4 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Toprim PF01751.22 gi|435851161|ref|YP_007312747.1| - 0.00023 21.3 0.0 0.0091 16.2 0.0 2.4 2 0 0 2 2 2 1 Toprim domain AAA_25 PF13481.6 gi|435851161|ref|YP_007312747.1| - 0.0013 18.3 0.3 0.0087 15.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|435851161|ref|YP_007312747.1| - 0.0014 19.1 0.0 0.0021 18.5 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|435851161|ref|YP_007312747.1| - 0.0015 18.3 0.1 0.019 14.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain Toprim_4 PF13662.6 gi|435851161|ref|YP_007312747.1| - 0.003 18.0 0.1 0.029 14.8 0.0 2.3 2 0 0 2 2 2 1 Toprim domain CoA_binding_3 PF13727.6 gi|435851161|ref|YP_007312747.1| - 0.003 17.6 0.0 0.43 10.6 0.0 2.2 2 0 0 2 2 2 1 CoA-binding domain CLP1_P PF16575.5 gi|435851161|ref|YP_007312747.1| - 0.006 16.4 0.1 0.11 12.2 0.0 2.3 2 1 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MipZ PF09140.11 gi|435851161|ref|YP_007312747.1| - 0.0078 15.5 0.0 1.8 7.8 0.0 2.3 2 0 0 2 2 2 1 ATPase MipZ SRP54 PF00448.22 gi|435851161|ref|YP_007312747.1| - 0.0097 15.5 1.5 2.5 7.7 0.3 2.2 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain DUF3929 PF13066.6 gi|435851161|ref|YP_007312747.1| - 0.011 15.8 0.2 8.1 6.6 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3929) PIF1 PF05970.14 gi|435851161|ref|YP_007312747.1| - 0.016 14.4 0.2 0.028 13.6 0.2 1.4 1 0 0 1 1 1 0 PIF1-like helicase DUF463 PF04317.12 gi|435851161|ref|YP_007312747.1| - 0.025 13.5 0.1 0.12 11.3 0.0 1.9 2 0 0 2 2 2 0 YcjX-like family, DUF463 NTPase_1 PF03266.15 gi|435851161|ref|YP_007312747.1| - 0.035 14.0 2.8 2.3 8.1 0.6 2.3 2 0 0 2 2 2 0 NTPase AAA_18 PF13238.6 gi|435851161|ref|YP_007312747.1| - 0.052 14.1 0.0 0.14 12.7 0.0 2.0 2 1 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|435851161|ref|YP_007312747.1| - 0.052 12.5 0.3 0.052 12.5 0.3 2.0 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Toprim_2 PF13155.6 gi|435851161|ref|YP_007312747.1| - 0.058 13.8 0.0 7.3 7.1 0.0 2.3 2 0 0 2 2 2 0 Toprim-like AAA_30 PF13604.6 gi|435851161|ref|YP_007312747.1| - 0.061 13.0 0.0 0.086 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|435851161|ref|YP_007312747.1| - 0.064 13.6 0.7 0.064 13.6 0.7 2.1 2 1 1 3 3 3 0 AAA domain Zeta_toxin PF06414.12 gi|435851161|ref|YP_007312747.1| - 0.081 12.2 0.1 0.18 11.1 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|435851161|ref|YP_007312747.1| - 0.094 13.0 0.2 0.21 11.9 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|435851161|ref|YP_007312747.1| - 0.13 12.3 0.1 1 9.4 0.1 2.2 1 1 0 1 1 1 0 AAA domain DUF1998 PF09369.10 gi|435851161|ref|YP_007312747.1| - 0.14 12.9 0.2 1.3 9.8 0.1 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF1998) DUF87 PF01935.17 gi|435851161|ref|YP_007312747.1| - 0.15 12.1 2.4 0.3 11.1 0.4 2.2 2 1 0 2 2 2 0 Helicase HerA, central domain DUF2075 PF09848.9 gi|435851161|ref|YP_007312747.1| - 0.16 11.1 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) CdhD PF03599.16 gi|435851162|ref|YP_007312748.1| - 3e-86 289.6 1.4 2.9e-79 266.6 0.3 3.1 1 1 1 2 2 2 2 CO dehydrogenase/acetyl-CoA synthase delta subunit His_biosynth PF00977.21 gi|435851162|ref|YP_007312748.1| - 0.12 11.8 0.4 0.28 10.6 0.1 1.7 2 0 0 2 2 2 0 Histidine biosynthesis protein CdhD PF03599.16 gi|435851163|ref|YP_007312749.1| - 5.1e-154 512.6 0.2 6e-154 512.4 0.2 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.13 gi|435851163|ref|YP_007312749.1| - 7.1e-15 54.4 1.7 1.3e-14 53.6 1.7 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster DUF362 PF04015.12 gi|435851167|ref|YP_007312753.1| - 5.8e-36 124.6 0.0 7.1e-36 124.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|435851167|ref|YP_007312753.1| - 3.5e-09 36.1 4.7 3.5e-09 36.1 4.7 2.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|435851167|ref|YP_007312753.1| - 2.8e-07 30.3 3.3 2.8e-07 30.3 3.3 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|435851167|ref|YP_007312753.1| - 2.9e-07 30.2 6.5 3.1e-06 26.9 2.7 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435851167|ref|YP_007312753.1| - 5.5e-07 29.6 5.4 1.3e-06 28.5 5.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435851167|ref|YP_007312753.1| - 1.3e-06 28.9 4.4 2.9e-06 27.8 4.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435851167|ref|YP_007312753.1| - 6.5e-06 26.2 4.7 1.8e-05 24.7 4.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435851167|ref|YP_007312753.1| - 7.2e-05 23.0 1.1 7.2e-05 23.0 1.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435851167|ref|YP_007312753.1| - 0.00014 22.0 17.0 0.0015 18.7 2.7 2.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435851167|ref|YP_007312753.1| - 0.00042 21.2 3.2 0.00095 20.0 3.2 1.6 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|435851167|ref|YP_007312753.1| - 0.0014 19.4 5.0 0.0014 19.4 5.0 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|435851167|ref|YP_007312753.1| - 0.0076 16.8 2.8 0.0076 16.8 2.8 2.1 1 1 1 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|435851167|ref|YP_007312753.1| - 0.019 15.7 1.7 0.019 15.7 1.7 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain Lar_N PF09861.9 gi|435851167|ref|YP_007312753.1| - 0.02 14.0 0.4 0.033 13.4 0.4 1.2 1 0 0 1 1 1 0 Lactate racemase N-terminal domain Fer4_22 PF17179.4 gi|435851167|ref|YP_007312753.1| - 0.023 15.6 0.8 0.023 15.6 0.8 2.2 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435851167|ref|YP_007312753.1| - 0.036 14.6 2.3 0.036 14.6 2.3 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|435851167|ref|YP_007312753.1| - 0.14 12.4 1.1 0.23 11.7 1.1 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|435851167|ref|YP_007312753.1| - 0.39 11.2 5.9 1.3 9.5 6.2 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF2193 PF09959.9 gi|435851168|ref|YP_007312754.1| - 8.2e-254 842.6 4.6 9.3e-254 842.4 4.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) C1_2 PF03107.16 gi|435851168|ref|YP_007312754.1| - 0.025 14.9 1.8 0.055 13.8 1.8 1.5 1 0 0 1 1 1 0 C1 domain DUF1940 PF09155.10 gi|435851168|ref|YP_007312754.1| - 0.028 14.5 0.2 0.074 13.2 0.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1940) zf-HIT PF04438.16 gi|435851168|ref|YP_007312754.1| - 0.44 10.5 4.4 0.77 9.7 4.4 1.4 1 0 0 1 1 1 0 HIT zinc finger MIP PF00230.20 gi|435851169|ref|YP_007312755.1| - 3.5e-48 164.3 19.0 3.9e-48 164.1 19.0 1.0 1 0 0 1 1 1 1 Major intrinsic protein NMD3 PF04981.13 gi|435851170|ref|YP_007312756.1| - 9.7e-51 172.6 0.2 1.3e-50 172.2 0.2 1.1 1 0 0 1 1 1 1 NMD3 family zf-ribbon_3 PF13248.6 gi|435851170|ref|YP_007312756.1| - 0.04 13.3 1.5 2.6 7.6 0.3 2.7 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|435851170|ref|YP_007312756.1| - 0.14 11.8 6.6 0.84 9.4 0.9 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-CCHC_5 PF14787.6 gi|435851170|ref|YP_007312756.1| - 5.2 6.9 5.0 0.65 9.8 0.6 1.8 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger DZR PF12773.7 gi|435851170|ref|YP_007312756.1| - 5.6 7.1 6.2 25 5.0 4.7 2.5 2 1 0 2 2 2 0 Double zinc ribbon ATP-grasp_3 PF02655.14 gi|435851171|ref|YP_007312757.1| - 1.9e-37 128.8 0.0 2.6e-37 128.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|435851171|ref|YP_007312757.1| - 1.6e-12 47.4 0.0 2.6e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_Ter PF15632.6 gi|435851171|ref|YP_007312757.1| - 1.2e-10 41.2 0.0 6.4e-10 38.9 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.6 gi|435851171|ref|YP_007312757.1| - 0.00042 19.6 0.0 0.0022 17.3 0.0 2.0 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp RimK PF08443.11 gi|435851171|ref|YP_007312757.1| - 0.0013 18.4 0.0 0.0091 15.6 0.0 2.0 1 1 0 1 1 1 1 RimK-like ATP-grasp domain GARS_A PF01071.19 gi|435851171|ref|YP_007312757.1| - 0.0056 16.5 0.0 3.1 7.5 0.0 2.4 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Dala_Dala_lig_C PF07478.13 gi|435851171|ref|YP_007312757.1| - 0.02 14.4 0.0 0.084 12.4 0.0 1.8 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus TFIIE_alpha PF02002.17 gi|435851172|ref|YP_007312758.1| - 9.7e-15 54.3 0.5 1.4e-14 53.8 0.5 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit DUF1610 PF07754.11 gi|435851172|ref|YP_007312758.1| - 0.022 14.7 1.2 0.068 13.2 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) HD PF01966.22 gi|435851173|ref|YP_007312759.1| - 1.3e-12 48.0 0.7 2.1e-12 47.3 0.7 1.3 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|435851173|ref|YP_007312759.1| - 0.00012 21.6 0.9 0.0085 15.6 0.1 2.4 2 1 1 3 3 3 2 HDOD domain Proteasome PF00227.26 gi|435851174|ref|YP_007312760.1| - 2e-54 184.0 0.9 2.2e-54 183.8 0.9 1.0 1 0 0 1 1 1 1 Proteasome subunit KH_7 PF17214.3 gi|435851175|ref|YP_007312761.1| - 6.2e-30 103.0 0.6 1.7e-28 98.3 0.0 2.9 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|435851175|ref|YP_007312761.1| - 1.2e-26 93.2 0.0 5.1e-26 91.1 0.0 2.1 2 0 0 2 2 2 1 Beta-Casp domain RMMBL PF07521.12 gi|435851175|ref|YP_007312761.1| - 2.1e-16 59.6 0.5 5e-16 58.4 0.1 1.9 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|435851175|ref|YP_007312761.1| - 4.4e-13 49.7 0.5 2.1e-12 47.5 0.4 2.1 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|435851175|ref|YP_007312761.1| - 1.4e-12 47.4 0.0 2.2e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|435851175|ref|YP_007312761.1| - 2.2e-09 37.1 0.1 5.8e-09 35.8 0.1 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|435851175|ref|YP_007312761.1| - 3.3e-05 23.6 0.3 0.00031 20.5 0.1 2.8 4 0 0 4 4 4 1 KH domain KH_1 PF00013.29 gi|435851175|ref|YP_007312761.1| - 0.0027 17.5 1.1 0.046 13.6 0.3 2.7 2 1 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|435851175|ref|YP_007312761.1| - 0.0037 17.1 0.0 0.0083 16.0 0.0 1.6 1 0 0 1 1 1 1 KH domain Lactamase_B_3 PF13483.6 gi|435851175|ref|YP_007312761.1| - 0.0053 16.7 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF3489 PF11994.8 gi|435851175|ref|YP_007312761.1| - 0.046 13.8 0.0 0.094 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) HAD_2 PF13419.6 gi|435851176|ref|YP_007312762.1| - 8.1e-30 104.2 0.0 9.7e-30 104.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|435851176|ref|YP_007312762.1| - 9.2e-16 58.8 0.0 5.5e-15 56.2 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|435851176|ref|YP_007312762.1| - 0.00035 20.6 0.0 0.00065 19.7 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like DUF5305 PF17231.2 gi|435851177|ref|YP_007312763.1| - 0.025 14.0 0.1 0.066 12.6 0.1 1.7 1 1 1 2 2 2 0 Family of unknown function (DUF5305) Tubulin PF00091.25 gi|435851178|ref|YP_007312764.1| - 1.8e-38 132.7 0.2 3.7e-38 131.7 0.2 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|435851178|ref|YP_007312764.1| - 1e-34 118.7 0.3 4.1e-34 116.8 0.0 2.2 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin_2 PF13809.6 gi|435851178|ref|YP_007312764.1| - 0.63 9.2 4.6 0.99 8.5 0.9 2.2 1 1 1 2 2 2 0 Tubulin like CdhD PF03599.16 gi|435851179|ref|YP_007312765.1| - 3.8e-09 35.8 0.1 6.3e-09 35.0 0.1 1.3 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF4346 PF14251.6 gi|435851179|ref|YP_007312765.1| - 3.7e-08 33.4 0.0 1.5e-07 31.5 0.1 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4346) Pterin_bind PF00809.22 gi|435851179|ref|YP_007312765.1| - 5.4e-08 32.8 0.3 3e-07 30.4 0.3 2.1 1 1 0 1 1 1 1 Pterin binding enzyme DUF561 PF04481.12 gi|435851179|ref|YP_007312765.1| - 0.12 11.5 0.0 0.24 10.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Repressor_Mnt PF11423.8 gi|435851179|ref|YP_007312765.1| - 0.17 11.7 0.1 0.36 10.6 0.1 1.5 1 0 0 1 1 1 0 Regulatory protein Mnt H_PPase PF03030.16 gi|435851181|ref|YP_007312767.1| - 8.7e-267 887.0 52.6 9.9e-267 886.8 52.6 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase ETRAMP PF09716.10 gi|435851182|ref|YP_007312768.1| - 1.6 8.9 3.6 14 5.8 3.6 3.1 1 1 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) ATP_bind_3 PF01171.20 gi|435851183|ref|YP_007312769.1| - 3.3e-14 53.1 0.0 4.9e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|435851183|ref|YP_007312769.1| - 1.2e-05 24.3 0.0 1.6e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|435851183|ref|YP_007312769.1| - 1.8e-05 24.9 0.0 3.1e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|435851183|ref|YP_007312769.1| - 0.0042 16.2 0.0 0.0056 15.8 0.0 1.2 1 0 0 1 1 1 1 NAD synthase zn-ribbon_14 PF16503.5 gi|435851183|ref|YP_007312769.1| - 0.0075 15.7 10.5 0.0075 15.7 10.5 2.9 3 0 0 3 3 3 1 Zinc-ribbon ZZ PF00569.17 gi|435851183|ref|YP_007312769.1| - 0.049 13.5 0.6 0.049 13.5 0.6 3.0 3 1 0 3 3 3 0 Zinc finger, ZZ type QueC PF06508.13 gi|435851183|ref|YP_007312769.1| - 0.082 12.4 0.0 0.082 12.4 0.0 2.1 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|435851183|ref|YP_007312769.1| - 0.12 12.0 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase Baculo_LEF5_C PF11792.8 gi|435851183|ref|YP_007312769.1| - 1.2 8.9 7.8 0.39 10.4 0.2 3.2 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain TctA PF01970.16 gi|435851184|ref|YP_007312770.1| - 2.7e-76 256.9 37.5 3.2e-76 256.7 37.5 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family PRA1 PF03208.19 gi|435851184|ref|YP_007312770.1| - 0.0045 16.6 6.6 0.0045 16.6 6.6 3.7 4 1 0 4 4 4 1 PRA1 family protein TMEM213 PF15192.6 gi|435851184|ref|YP_007312770.1| - 0.28 11.2 0.9 1.9 8.5 0.0 2.2 2 0 0 2 2 2 0 TMEM213 family CbiA PF01656.23 gi|435851185|ref|YP_007312771.1| - 1.5e-20 73.6 0.1 2e-20 73.1 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|435851185|ref|YP_007312771.1| - 2.3e-11 44.0 0.0 7.4e-11 42.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|435851185|ref|YP_007312771.1| - 2.9e-10 40.0 0.2 2.3e-06 27.3 0.1 3.0 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|435851185|ref|YP_007312771.1| - 1.4e-07 31.0 0.5 4.3e-07 29.4 0.2 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|435851185|ref|YP_007312771.1| - 2.2e-05 24.1 0.0 0.0012 18.3 0.1 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|435851185|ref|YP_007312771.1| - 5.2e-05 22.8 0.2 0.002 17.6 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|435851185|ref|YP_007312771.1| - 0.0001 22.2 1.4 0.0034 17.2 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|435851185|ref|YP_007312771.1| - 0.00053 20.5 0.0 0.00086 19.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|435851185|ref|YP_007312771.1| - 0.0012 18.7 0.0 0.0033 17.4 0.0 1.8 1 0 0 1 1 1 1 NTPase AAA_24 PF13479.6 gi|435851185|ref|YP_007312771.1| - 0.0015 18.3 0.1 0.0078 16.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain CLP1_P PF16575.5 gi|435851185|ref|YP_007312771.1| - 0.004 17.0 0.0 0.023 14.5 0.0 2.2 3 0 0 3 3 3 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_30 PF13604.6 gi|435851185|ref|YP_007312771.1| - 0.0067 16.2 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|435851185|ref|YP_007312771.1| - 0.0081 15.8 0.6 0.014 15.0 0.6 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|435851185|ref|YP_007312771.1| - 0.015 15.7 0.0 0.025 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain DUF87 PF01935.17 gi|435851185|ref|YP_007312771.1| - 0.018 15.2 0.1 0.039 14.0 0.0 1.6 2 0 0 2 2 2 0 Helicase HerA, central domain PRK PF00485.18 gi|435851185|ref|YP_007312771.1| - 0.023 14.4 0.1 0.042 13.6 0.1 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family APS_kinase PF01583.20 gi|435851185|ref|YP_007312771.1| - 0.028 14.3 0.1 0.046 13.6 0.1 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase MipZ PF09140.11 gi|435851185|ref|YP_007312771.1| - 0.033 13.5 0.5 0.058 12.7 0.5 1.3 1 0 0 1 1 1 0 ATPase MipZ MeaB PF03308.16 gi|435851185|ref|YP_007312771.1| - 0.036 13.0 0.1 0.05 12.6 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_5 PF07728.14 gi|435851185|ref|YP_007312771.1| - 0.089 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|435851185|ref|YP_007312771.1| - 0.089 12.0 0.8 0.17 11.1 0.4 1.6 2 0 0 2 2 2 0 NB-ARC domain MobB PF03205.14 gi|435851185|ref|YP_007312771.1| - 0.1 12.5 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.6 gi|435851185|ref|YP_007312771.1| - 0.11 12.8 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|435851185|ref|YP_007312771.1| - 0.14 12.4 0.0 0.32 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|435851185|ref|YP_007312771.1| - 0.14 11.9 0.1 0.25 11.1 0.1 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.12 gi|435851185|ref|YP_007312771.1| - 0.14 12.0 0.2 0.25 11.3 0.2 1.3 1 0 0 1 1 1 0 NACHT domain KTI12 PF08433.10 gi|435851185|ref|YP_007312771.1| - 0.21 11.0 0.0 0.3 10.5 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ATP-synt_ab PF00006.25 gi|435851185|ref|YP_007312771.1| - 0.37 10.4 1.1 1.6 8.3 1.1 1.9 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Cation_efflux PF01545.21 gi|435851186|ref|YP_007312772.1| - 4.5e-44 150.6 13.4 5.5e-44 150.3 13.4 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|435851186|ref|YP_007312772.1| - 3.9e-21 75.0 2.0 7.1e-21 74.1 2.0 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter MHYT PF03707.16 gi|435851186|ref|YP_007312772.1| - 0.49 10.6 0.1 0.49 10.6 0.1 2.7 2 1 1 3 3 3 0 Bacterial signalling protein N terminal repeat ATP-synt_J PF04911.12 gi|435851186|ref|YP_007312772.1| - 6.3 6.5 4.9 3.9 7.1 0.2 2.8 4 0 0 4 4 4 0 ATP synthase j chain Chorismate_synt PF01264.21 gi|435851187|ref|YP_007312773.1| - 5.2e-143 475.6 1.9 5.9e-143 475.5 1.9 1.0 1 0 0 1 1 1 1 Chorismate synthase PhoU PF01895.19 gi|435851188|ref|YP_007312774.1| - 1.4e-23 83.2 9.7 1.5e-17 63.8 0.8 3.3 3 0 0 3 3 3 2 PhoU domain MazE_antitoxin PF04014.18 gi|435851188|ref|YP_007312774.1| - 1.2e-06 28.3 0.0 2.5e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin ING PF12998.7 gi|435851188|ref|YP_007312774.1| - 0.15 12.7 1.3 0.46 11.1 0.4 2.2 2 0 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding Aminotran_1_2 PF00155.21 gi|435851189|ref|YP_007312775.1| - 2.5e-61 207.9 0.0 2.9e-61 207.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|435851189|ref|YP_007312775.1| - 0.023 13.6 0.0 0.21 10.4 0.0 2.0 2 0 0 2 2 2 0 Allinase Cys_Met_Meta_PP PF01053.20 gi|435851189|ref|YP_007312775.1| - 0.039 12.5 0.0 0.061 11.9 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme HATPase_c PF02518.26 gi|435851190|ref|YP_007312776.1| - 7e-27 94.2 0.1 1.3e-26 93.3 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|435851190|ref|YP_007312776.1| - 6.3e-13 48.6 0.1 2.5e-12 46.6 0.1 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|435851190|ref|YP_007312776.1| - 1.9e-12 47.4 0.1 9.5e-08 32.2 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|435851190|ref|YP_007312776.1| - 8.4e-12 45.3 0.2 3.8e-06 27.1 0.1 3.8 3 2 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|435851190|ref|YP_007312776.1| - 3.1e-08 33.4 0.0 3.3e-06 27.0 0.0 2.8 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|435851190|ref|YP_007312776.1| - 8e-07 29.1 0.1 7.7e-05 22.7 0.0 3.6 5 0 0 5 5 5 1 PAS fold HATPase_c_5 PF14501.6 gi|435851190|ref|YP_007312776.1| - 0.00048 20.0 1.4 0.0014 18.5 0.1 2.3 2 0 0 2 2 2 1 GHKL domain HATPase_c_3 PF13589.6 gi|435851190|ref|YP_007312776.1| - 0.0018 18.1 0.1 0.0036 17.1 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|435851190|ref|YP_007312776.1| - 0.002 18.3 0.1 0.3 11.3 0.0 3.3 3 0 0 3 3 3 1 PAS fold PAS_3 PF08447.12 gi|435851190|ref|YP_007312776.1| - 0.044 14.1 0.0 3.6 8.0 0.0 3.4 4 0 0 4 4 4 0 PAS fold DUF1091 PF06477.13 gi|435851190|ref|YP_007312776.1| - 0.17 12.4 0.3 1.2 9.6 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1091) HATPase_c PF02518.26 gi|435851191|ref|YP_007312777.1| - 3.4e-31 108.1 0.4 1.3e-30 106.2 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|435851191|ref|YP_007312777.1| - 2.9e-20 72.4 0.0 4.5e-10 39.5 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|435851191|ref|YP_007312777.1| - 1.1e-18 67.3 0.0 6.8e-13 48.7 0.1 3.4 3 1 0 3 3 3 2 PAS fold PAS_4 PF08448.10 gi|435851191|ref|YP_007312777.1| - 1.3e-15 57.6 0.0 2e-09 37.6 0.0 3.4 3 0 0 3 3 3 2 PAS fold HisKA PF00512.25 gi|435851191|ref|YP_007312777.1| - 5.9e-15 55.1 0.2 5.9e-15 55.1 0.2 2.1 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|435851191|ref|YP_007312777.1| - 3.2e-13 49.8 0.0 1.3e-06 28.6 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS_8 PF13188.7 gi|435851191|ref|YP_007312777.1| - 2.8e-09 36.8 0.0 1.1e-05 25.4 0.0 2.9 2 0 0 2 2 2 2 PAS domain HATPase_c_5 PF14501.6 gi|435851191|ref|YP_007312777.1| - 4.2e-06 26.6 0.0 1.2e-05 25.2 0.0 1.8 2 0 0 2 2 2 1 GHKL domain HATPase_c_3 PF13589.6 gi|435851191|ref|YP_007312777.1| - 0.0014 18.5 0.0 0.005 16.7 0.0 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|435851191|ref|YP_007312777.1| - 0.0058 16.8 0.0 0.68 10.1 0.0 3.1 2 1 0 2 2 2 1 PAS fold LMBR1 PF04791.16 gi|435851191|ref|YP_007312777.1| - 0.034 13.1 1.0 0.048 12.6 1.0 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein HATPase_c_2 PF13581.6 gi|435851191|ref|YP_007312777.1| - 0.045 13.7 0.0 0.09 12.7 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Lyase_1 PF00206.20 gi|435851192|ref|YP_007312778.1| - 3.9e-63 213.7 0.0 7e-63 212.9 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|435851192|ref|YP_007312778.1| - 1.6e-14 54.4 0.1 6.8e-14 52.4 0.0 2.2 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal Asparaginase PF00710.20 gi|435851193|ref|YP_007312779.1| - 1.2e-59 201.1 0.8 1.9e-59 200.4 0.3 1.5 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|435851193|ref|YP_007312779.1| - 1.4e-32 112.3 0.1 1.8e-31 108.7 0.0 2.2 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|435851193|ref|YP_007312779.1| - 1.2e-19 69.4 0.1 2.8e-19 68.2 0.1 1.7 1 0 0 1 1 1 1 GatD N-terminal domain Asp_Glu_race PF01177.22 gi|435851193|ref|YP_007312779.1| - 0.00067 19.6 0.1 0.0012 18.7 0.1 1.4 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase RRM_3 PF08777.11 gi|435851193|ref|YP_007312779.1| - 0.091 12.8 0.0 2 8.5 0.0 2.5 2 0 0 2 2 2 0 RNA binding motif tRNA-synt_2 PF00152.20 gi|435851194|ref|YP_007312780.1| - 6.1e-92 308.0 0.0 7.6e-92 307.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|435851194|ref|YP_007312780.1| - 4.1e-14 52.3 0.0 9e-14 51.2 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|435851194|ref|YP_007312780.1| - 0.00027 20.5 0.5 0.012 15.1 0.1 2.6 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) Rib_5-P_isom_A PF06026.14 gi|435851195|ref|YP_007312781.1| - 2e-62 209.9 0.3 2.5e-62 209.5 0.3 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|435851195|ref|YP_007312781.1| - 5.1e-07 29.8 1.0 0.0002 21.3 0.0 2.3 1 1 0 2 2 2 2 DeoR C terminal sensor domain TrkA_C PF02080.21 gi|435851196|ref|YP_007312782.1| - 1.9e-28 98.1 0.0 7.4e-13 48.1 0.0 2.6 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|435851196|ref|YP_007312782.1| - 4.6e-20 71.9 15.4 3.5e-11 43.4 6.1 2.5 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.16 gi|435851196|ref|YP_007312782.1| - 0.0004 19.8 11.7 0.059 12.7 2.0 2.2 2 0 0 2 2 2 2 Protein of unknown function DUF47 Cupin_6 PF12852.7 gi|435851196|ref|YP_007312782.1| - 0.087 12.5 0.0 0.61 9.8 0.0 2.1 2 0 0 2 2 2 0 Cupin MgtE PF01769.16 gi|435851197|ref|YP_007312783.1| - 2.2e-19 70.1 12.0 2.2e-19 70.1 12.0 1.4 2 0 0 2 2 2 1 Divalent cation transporter MgtE PF01769.16 gi|435851198|ref|YP_007312784.1| - 5.7e-20 71.9 11.5 5.7e-20 71.9 11.5 1.8 2 0 0 2 2 2 1 Divalent cation transporter Zeta_toxin PF06414.12 gi|435851199|ref|YP_007312785.1| - 0.0012 18.2 0.0 0.038 13.3 0.0 2.1 2 0 0 2 2 2 2 Zeta toxin ABC_tran PF00005.27 gi|435851199|ref|YP_007312785.1| - 0.054 14.0 0.1 0.094 13.2 0.1 1.7 1 1 0 1 1 1 0 ABC transporter AAA_33 PF13671.6 gi|435851199|ref|YP_007312785.1| - 0.089 12.9 0.0 1.1 9.4 0.0 2.2 1 1 0 1 1 1 0 AAA domain Herpes_UL36 PF03586.13 gi|435851200|ref|YP_007312786.1| - 0.047 13.0 0.1 0.053 12.8 0.1 1.1 1 0 0 1 1 1 0 Herpesvirus UL36 tegument protein DUF2924 PF11149.8 gi|435851200|ref|YP_007312786.1| - 0.078 13.4 0.0 0.082 13.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2924) DUF3795 PF12675.7 gi|435851201|ref|YP_007312787.1| - 5.5e-07 29.9 18.5 1.9e-06 28.2 15.8 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF3795) CorA PF01544.18 gi|435851202|ref|YP_007312788.1| - 2.2e-58 197.9 9.6 2.6e-58 197.7 9.6 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein CheW PF01584.19 gi|435851203|ref|YP_007312789.1| - 8.9e-39 132.3 3.6 1.1e-38 132.0 3.6 1.0 1 0 0 1 1 1 1 CheW-like domain FKBP_C PF00254.28 gi|435851204|ref|YP_007312790.1| - 7e-25 87.2 0.0 8.3e-25 86.9 0.0 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Flavodoxin_2 PF02525.17 gi|435851205|ref|YP_007312791.1| - 2.5e-54 184.0 0.1 2.9e-54 183.8 0.1 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 gi|435851205|ref|YP_007312791.1| - 2.7e-12 46.7 0.0 4.9e-12 45.9 0.0 1.4 1 1 0 1 1 1 1 NADPH-dependent FMN reductase AA_permease_2 PF13520.6 gi|435851207|ref|YP_007312793.1| - 5.9e-64 216.5 47.5 6.9e-64 216.2 47.5 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|435851207|ref|YP_007312793.1| - 6.2e-09 35.0 39.3 1.1e-08 34.1 39.3 1.4 1 1 0 1 1 1 1 Amino acid permease Dimeth_Pyl PF09505.10 gi|435851208|ref|YP_007312794.1| - 2.6e-265 880.1 9.4 3e-265 880.0 9.4 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) Antimicrobial_7 PF08102.11 gi|435851208|ref|YP_007312794.1| - 0.0072 16.5 0.0 0.016 15.4 0.0 1.6 1 0 0 1 1 1 1 Scorpion antimicrobial peptide B12-binding PF02310.19 gi|435851209|ref|YP_007312795.1| - 4.2e-26 91.4 0.9 6.1e-26 90.8 0.3 1.5 2 0 0 2 2 2 1 B12 binding domain B12-binding_2 PF02607.17 gi|435851209|ref|YP_007312795.1| - 2.7e-19 69.4 1.1 6.6e-19 68.1 1.1 1.7 1 0 0 1 1 1 1 B12 binding domain HisKA_2 PF07568.12 gi|435851210|ref|YP_007312796.1| - 5.5e-32 109.7 1.9 1.6e-31 108.2 1.9 1.9 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 gi|435851210|ref|YP_007312796.1| - 9.8e-22 77.9 5.5 9.8e-22 77.9 5.5 1.7 2 0 0 2 2 2 1 Cache domain HAMP PF00672.25 gi|435851210|ref|YP_007312796.1| - 4.2e-11 43.0 2.2 4.3e-05 23.8 0.1 3.6 3 0 0 3 3 3 3 HAMP domain HATPase_c PF02518.26 gi|435851210|ref|YP_007312796.1| - 4.5e-09 36.8 0.6 1.3e-08 35.3 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|435851210|ref|YP_007312796.1| - 1.4e-08 34.7 0.0 3.1e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|435851210|ref|YP_007312796.1| - 0.00029 21.5 0.2 0.00087 19.9 0.2 1.9 1 0 0 1 1 1 1 HWE histidine kinase Cache_3-Cache_2 PF17201.4 gi|435851210|ref|YP_007312796.1| - 0.0022 17.3 3.6 0.042 13.1 0.0 2.7 2 1 0 3 3 3 1 Cache 3/Cache 2 fusion domain Head-tail_con PF12236.8 gi|435851210|ref|YP_007312796.1| - 0.017 13.6 0.2 0.028 12.9 0.2 1.2 1 0 0 1 1 1 0 Bacteriophage head to tail connecting protein SPOB_a PF14689.6 gi|435851210|ref|YP_007312796.1| - 0.11 12.2 1.8 0.68 9.7 1.7 2.3 1 1 1 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain DUF2304 PF10066.9 gi|435851210|ref|YP_007312796.1| - 1.1 9.6 7.2 0.12 12.6 0.9 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) Response_reg PF00072.24 gi|435851211|ref|YP_007312797.1| - 3.6e-22 78.6 0.6 4.2e-22 78.4 0.6 1.1 1 0 0 1 1 1 1 Response regulator receiver domain DUF1724 PF08350.10 gi|435851212|ref|YP_007312798.1| - 6.3e-21 74.3 0.1 1.1e-20 73.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|435851212|ref|YP_007312798.1| - 0.0002 21.2 0.3 0.00039 20.2 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|435851212|ref|YP_007312798.1| - 0.00075 19.4 0.2 0.0016 18.3 0.2 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|435851212|ref|YP_007312798.1| - 0.0017 18.2 0.1 0.0035 17.2 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|435851212|ref|YP_007312798.1| - 0.096 13.2 0.1 0.2 12.2 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DNA_gyraseB PF00204.25 gi|435851213|ref|YP_007312799.1| - 1.5e-63 213.4 2.7 2.9e-63 212.5 2.7 1.5 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|435851213|ref|YP_007312799.1| - 6.1e-31 106.4 0.1 1.2e-30 105.4 0.1 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|435851213|ref|YP_007312799.1| - 2.8e-22 79.3 0.1 8.8e-22 77.7 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|435851213|ref|YP_007312799.1| - 2.7e-16 59.7 0.0 7.2e-16 58.3 0.0 1.8 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 gi|435851213|ref|YP_007312799.1| - 0.002 17.9 0.2 0.0057 16.5 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_topoisoIV PF00521.20 gi|435851214|ref|YP_007312800.1| - 7.3e-156 519.3 0.8 9.7e-156 518.9 0.8 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|435851214|ref|YP_007312800.1| - 1.2e-80 264.8 17.4 4.1e-15 55.0 0.8 6.5 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller SOR_SNZ PF01680.17 gi|435851215|ref|YP_007312801.1| - 3.2e-105 350.5 8.6 4.3e-105 350.0 8.6 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|435851215|ref|YP_007312801.1| - 7.1e-12 45.2 6.4 1.6e-07 30.9 1.0 2.3 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|435851215|ref|YP_007312801.1| - 0.00042 19.5 0.6 0.057 12.5 0.1 2.4 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|435851215|ref|YP_007312801.1| - 0.0014 17.8 2.5 0.043 13.0 0.1 3.0 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|435851215|ref|YP_007312801.1| - 0.0056 15.9 0.1 0.49 9.5 0.0 2.4 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase NMO PF03060.15 gi|435851215|ref|YP_007312801.1| - 0.013 14.9 0.3 0.013 14.9 0.3 2.1 2 0 0 2 2 2 0 Nitronate monooxygenase TetR_C_27 PF17935.1 gi|435851215|ref|YP_007312801.1| - 0.027 14.5 0.0 0.096 12.8 0.0 1.9 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain MCM_lid PF17855.1 gi|435851215|ref|YP_007312801.1| - 0.053 13.9 0.1 1.3 9.5 0.0 2.7 3 0 0 3 3 3 0 MCM AAA-lid domain His_biosynth PF00977.21 gi|435851215|ref|YP_007312801.1| - 0.066 12.7 0.5 0.27 10.7 0.0 2.0 2 0 0 2 2 2 0 Histidine biosynthesis protein SNO PF01174.19 gi|435851216|ref|YP_007312802.1| - 1.2e-54 185.0 0.1 1.4e-54 184.8 0.1 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|435851216|ref|YP_007312802.1| - 1e-12 48.1 0.1 1.3e-12 47.7 0.1 1.3 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|435851216|ref|YP_007312802.1| - 8.3e-09 35.5 0.0 1.4e-08 34.7 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.17 gi|435851216|ref|YP_007312802.1| - 0.00028 20.6 0.0 0.00038 20.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.24 gi|435851216|ref|YP_007312802.1| - 0.00034 20.5 0.1 0.00053 19.8 0.1 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|435851216|ref|YP_007312802.1| - 0.0012 18.6 0.1 0.0074 16.1 0.0 2.1 2 0 0 2 2 2 1 Peptidase C26 Putative_PNPOx PF01243.20 gi|435851217|ref|YP_007312803.1| - 1.2e-17 63.8 0.0 1.5e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|435851217|ref|YP_007312803.1| - 0.0038 16.8 0.0 0.0047 16.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like DUF447 PF04289.12 gi|435851217|ref|YP_007312803.1| - 0.082 12.7 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF447) TrmB PF01978.19 gi|435851218|ref|YP_007312804.1| - 1.4e-21 76.1 0.0 2.9e-21 75.1 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|435851218|ref|YP_007312804.1| - 5.6e-06 25.7 0.0 0.00017 20.9 0.0 2.1 1 1 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.10 gi|435851218|ref|YP_007312804.1| - 3.4e-05 23.5 0.0 7.3e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|435851218|ref|YP_007312804.1| - 0.00044 20.1 0.0 0.0011 18.8 0.0 1.7 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|435851218|ref|YP_007312804.1| - 0.0012 18.7 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.16 gi|435851218|ref|YP_007312804.1| - 0.0023 18.3 0.2 0.022 15.1 0.0 2.5 3 1 0 3 3 3 1 Penicillinase repressor Rrf2 PF02082.20 gi|435851218|ref|YP_007312804.1| - 0.02 15.2 0.0 0.075 13.4 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator HTH_9 PF08221.11 gi|435851218|ref|YP_007312804.1| - 0.026 14.6 0.0 0.22 11.7 0.0 2.3 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain NPCBM_assoc PF10633.9 gi|435851219|ref|YP_007312805.1| - 1.3e-08 35.0 0.0 0.0012 19.1 0.0 3.0 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|435851219|ref|YP_007312805.1| - 0.00075 19.7 1.9 0.016 15.4 0.1 3.0 2 1 1 3 3 3 1 CARDB DUF4064 PF13273.6 gi|435851219|ref|YP_007312805.1| - 0.028 14.7 0.6 0.062 13.6 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) TrbC PF04956.13 gi|435851219|ref|YP_007312805.1| - 0.079 13.2 0.3 14 5.9 0.1 2.3 2 0 0 2 2 2 0 TrbC/VIRB2 family DUF5385 PF17359.2 gi|435851219|ref|YP_007312805.1| - 0.089 12.3 0.5 0.15 11.6 0.5 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5385) DUF2162 PF09930.9 gi|435851219|ref|YP_007312805.1| - 0.11 11.8 0.5 9 5.6 0.0 2.2 2 0 0 2 2 2 0 Predicted transporter (DUF2162) DUF11 PF01345.18 gi|435851220|ref|YP_007312806.1| - 0.099 13.0 2.5 1 9.7 0.4 3.2 2 2 1 3 3 3 0 Domain of unknown function DUF11 MacB_PCD PF12704.7 gi|435851220|ref|YP_007312806.1| - 0.48 10.8 4.7 8.5 6.7 0.0 2.8 2 1 0 3 3 3 0 MacB-like periplasmic core domain MMPL PF03176.15 gi|435851221|ref|YP_007312807.1| - 9.5e-62 208.8 3.8 1.5e-31 109.6 0.2 2.2 2 0 0 2 2 2 2 MMPL family ACR_tran PF00873.19 gi|435851221|ref|YP_007312807.1| - 2.3e-16 58.7 16.6 3.2e-11 41.7 7.5 2.3 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Sterol-sensing PF12349.8 gi|435851221|ref|YP_007312807.1| - 6.9e-16 58.4 6.3 2.7e-07 30.5 0.4 2.6 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|435851221|ref|YP_007312807.1| - 3.1e-11 43.0 6.2 3.1e-11 43.0 6.2 2.4 2 0 0 2 2 2 1 Protein export membrane protein Patched PF02460.18 gi|435851221|ref|YP_007312807.1| - 1.1e-06 27.1 22.8 4.7e-06 25.0 4.5 2.1 2 0 0 2 2 2 2 Patched family Glycophorin_A PF01102.18 gi|435851221|ref|YP_007312807.1| - 0.03 14.6 0.2 0.15 12.3 0.2 2.3 1 0 0 1 1 1 0 Glycophorin A Trp_oprn_chp PF09534.10 gi|435851221|ref|YP_007312807.1| - 0.16 11.8 0.1 47 3.7 0.0 3.3 2 1 1 3 3 3 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Macro PF01661.21 gi|435851222|ref|YP_007312808.1| - 3.4e-41 140.0 0.0 4.5e-41 139.6 0.0 1.1 1 0 0 1 1 1 1 Macro domain Peptidase_M20 PF01546.28 gi|435851223|ref|YP_007312809.1| - 1.2e-19 70.9 0.0 1.7e-19 70.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|435851223|ref|YP_007312809.1| - 1.1e-05 25.3 0.0 3.5e-05 23.7 0.0 1.9 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|435851223|ref|YP_007312809.1| - 0.00057 19.6 0.0 0.00095 18.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 DUF523 PF04463.12 gi|435851224|ref|YP_007312810.1| - 9.1e-34 116.4 0.0 9e-33 113.2 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF523) DUF1722 PF08349.11 gi|435851224|ref|YP_007312810.1| - 2.6e-12 47.1 0.0 5e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) CCG PF02754.16 gi|435851225|ref|YP_007312811.1| - 2e-22 79.2 0.2 2.7e-14 53.1 0.1 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|435851225|ref|YP_007312811.1| - 1.7e-08 34.8 1.2 1.7e-08 34.8 1.2 2.4 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435851225|ref|YP_007312811.1| - 3.7e-08 34.2 3.2 3.7e-08 34.2 3.2 2.1 2 0 0 2 2 1 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|435851225|ref|YP_007312811.1| - 4e-06 26.8 13.3 0.00066 19.7 0.2 4.0 4 1 0 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435851225|ref|YP_007312811.1| - 3.4e-05 24.3 2.5 3.4e-05 24.3 2.5 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435851225|ref|YP_007312811.1| - 6.9e-05 22.9 8.1 0.013 15.6 1.0 3.6 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|435851225|ref|YP_007312811.1| - 7.9e-05 22.8 3.1 0.12 12.6 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|435851225|ref|YP_007312811.1| - 8.2e-05 22.3 12.0 0.00014 21.5 2.3 3.7 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435851225|ref|YP_007312811.1| - 8.6e-05 23.1 7.4 8.6e-05 23.1 7.4 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435851225|ref|YP_007312811.1| - 0.0014 18.7 12.6 0.0049 17.0 1.7 3.6 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|435851225|ref|YP_007312811.1| - 0.017 14.9 2.0 4.3 7.2 0.3 2.6 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.7 gi|435851225|ref|YP_007312811.1| - 0.072 13.6 2.6 0.072 13.6 2.6 4.4 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|435851225|ref|YP_007312811.1| - 0.49 11.3 5.0 11 6.9 0.7 3.0 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|435851225|ref|YP_007312811.1| - 1.8 9.2 12.3 0.11 13.1 3.2 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|435851225|ref|YP_007312811.1| - 4 7.7 20.7 0.062 13.4 3.6 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|435851225|ref|YP_007312811.1| - 6.5 7.1 21.3 0.66 10.2 2.0 3.8 4 0 0 4 4 3 0 4Fe-4S binding domain ResIII PF04851.15 gi|435851226|ref|YP_007312812.1| - 6.7e-12 45.7 0.0 2.4e-11 43.9 0.0 2.0 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|435851226|ref|YP_007312812.1| - 7.3e-08 32.4 0.0 3.9e-07 30.0 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.6 gi|435851226|ref|YP_007312812.1| - 1.7e-06 28.3 0.3 8.9e-06 26.0 0.1 2.3 2 0 0 2 2 2 1 Helicase C-terminal domain SdrD_B PF17210.3 gi|435851227|ref|YP_007312813.1| - 0.0086 16.3 2.8 0.021 15.0 0.3 2.6 2 1 0 2 2 2 1 SdrD B-like domain phage_tail_N PF08400.10 gi|435851227|ref|YP_007312813.1| - 0.017 15.1 0.1 0.031 14.3 0.1 1.4 1 0 0 1 1 1 0 Prophage tail fibre N-terminal CarboxypepD_reg PF13620.6 gi|435851227|ref|YP_007312813.1| - 0.032 14.5 0.7 0.26 11.6 0.0 2.5 2 2 0 2 2 2 0 Carboxypeptidase regulatory-like domain DUF4888 PF16229.5 gi|435851227|ref|YP_007312813.1| - 0.055 13.4 0.4 0.092 12.7 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4888) bMG3 PF11974.8 gi|435851227|ref|YP_007312813.1| - 0.13 12.3 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain Diphthami_syn_2 PF01902.17 gi|435851228|ref|YP_007312814.1| - 9.4e-70 234.5 0.1 8.4e-69 231.4 0.2 2.4 3 0 0 3 3 3 1 Diphthamide synthase Asn_synthase PF00733.21 gi|435851228|ref|YP_007312814.1| - 4.1e-53 181.3 0.0 2.2e-29 103.2 0.0 3.2 2 1 1 3 3 3 2 Asparagine synthase GATase_7 PF13537.6 gi|435851228|ref|YP_007312814.1| - 9.7e-16 57.8 0.0 2.2e-15 56.6 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|435851228|ref|YP_007312814.1| - 1.3e-08 35.1 0.0 4.2e-08 33.5 0.0 1.9 1 0 0 1 1 1 1 Glutamine amidotransferase domain tRNA_Me_trans PF03054.16 gi|435851228|ref|YP_007312814.1| - 0.0032 16.3 0.0 1.1 7.9 0.0 2.5 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|435851228|ref|YP_007312814.1| - 0.0038 16.8 0.0 1.1 8.7 0.0 2.7 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|435851228|ref|YP_007312814.1| - 0.004 16.3 0.0 0.011 14.8 0.0 1.8 1 1 0 1 1 1 1 NAD synthase CDP-OH_P_transf PF01066.21 gi|435851230|ref|YP_007312816.1| - 9.8e-14 51.9 3.6 9.8e-14 51.9 3.6 2.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PurS PF02700.14 gi|435851231|ref|YP_007312817.1| - 3.8e-26 91.0 0.1 4.2e-26 90.9 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF2184 PF09950.9 gi|435851231|ref|YP_007312817.1| - 0.0051 16.2 0.0 0.0062 15.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2184) GATase_5 PF13507.6 gi|435851232|ref|YP_007312818.1| - 4.4e-43 147.3 0.0 5.4e-43 147.0 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|435851232|ref|YP_007312818.1| - 7.7e-09 35.6 0.0 1.2e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|435851232|ref|YP_007312818.1| - 7.2e-08 32.4 0.0 1.1e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|435851232|ref|YP_007312818.1| - 1.1e-07 31.6 0.0 2.1e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|435851232|ref|YP_007312818.1| - 0.00047 20.0 0.0 0.0026 17.6 0.0 1.9 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|435851232|ref|YP_007312818.1| - 0.0032 17.3 0.1 0.0051 16.6 0.1 1.4 1 1 0 1 1 1 1 Peptidase C26 RNase_HII PF01351.18 gi|435851233|ref|YP_007312819.1| - 2.1e-49 168.1 0.0 2.4e-49 167.9 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII RHH_8 PF17723.1 gi|435851233|ref|YP_007312819.1| - 0.089 13.0 0.4 0.23 11.6 0.1 1.9 2 0 0 2 2 2 0 Ribbon-Helix-Helix transcriptional regulator family T2SSF PF00482.23 gi|435851234|ref|YP_007312820.1| - 6.3e-17 61.7 1.4 6.3e-17 61.7 1.4 2.6 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F tRNA_synthFbeta PF17759.1 gi|435851236|ref|YP_007312822.1| - 1.1e-41 142.7 0.0 1.9e-41 141.9 0.0 1.4 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|435851236|ref|YP_007312822.1| - 4e-17 62.3 0.6 1e-15 57.7 0.1 2.8 3 0 0 3 3 3 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|435851236|ref|YP_007312822.1| - 1.1e-13 51.3 0.0 1.8e-13 50.5 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.20 gi|435851236|ref|YP_007312822.1| - 0.038 13.5 0.0 0.1 12.1 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) NTP_transf_2 PF01909.23 gi|435851238|ref|YP_007312824.1| - 6e-16 58.5 0.0 6.7e-16 58.4 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|435851238|ref|YP_007312824.1| - 6e-12 45.5 0.1 6.8e-12 45.3 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|435851238|ref|YP_007312824.1| - 0.0042 17.3 0.0 0.0044 17.2 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm DUF86 PF01934.17 gi|435851239|ref|YP_007312825.1| - 3.7e-23 81.6 0.1 5.6e-23 81.1 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF86 FlaC_arch PF05377.11 gi|435851239|ref|YP_007312825.1| - 0.0074 16.7 0.2 0.053 13.9 0.0 2.2 3 0 0 3 3 3 1 Flagella accessory protein C (FlaC) Phage_holin_2_1 PF04971.12 gi|435851240|ref|YP_007312826.1| - 0.0015 18.5 1.7 0.0096 15.9 0.7 2.6 2 0 0 2 2 2 1 Bacteriophage P21 holin S SIR2 PF02146.17 gi|435851241|ref|YP_007312827.1| - 2.6e-55 187.1 0.0 3.2e-55 186.8 0.0 1.1 1 0 0 1 1 1 1 Sir2 family HypA PF01155.19 gi|435851241|ref|YP_007312827.1| - 0.025 14.6 0.0 0.042 13.9 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Vps36-NZF-N PF16988.5 gi|435851241|ref|YP_007312827.1| - 0.028 13.8 0.6 2.7 7.4 0.1 2.3 1 1 1 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain FYVE_2 PF02318.16 gi|435851241|ref|YP_007312827.1| - 0.15 12.3 0.8 15 5.8 0.1 2.1 1 1 1 2 2 2 0 FYVE-type zinc finger Sif PF06767.11 gi|435851241|ref|YP_007312827.1| - 0.17 10.9 0.0 0.3 10.0 0.0 1.3 1 0 0 1 1 1 0 Sif protein Disaggr_repeat PF06848.11 gi|435851243|ref|YP_007312829.1| - 1.7e-86 288.5 5.2 1.7e-86 288.5 5.2 1.9 2 0 0 2 2 2 1 Disaggregatase related repeat TGFb_propeptide PF00688.18 gi|435851243|ref|YP_007312829.1| - 0.0054 16.5 0.0 0.49 10.1 0.0 2.1 2 0 0 2 2 2 2 TGF-beta propeptide Colicin_E5 PF12106.8 gi|435851243|ref|YP_007312829.1| - 0.43 10.9 11.8 3.6 8.0 0.2 5.8 7 0 0 7 7 7 0 Colicin E5 ribonuclease domain P-II PF00543.22 gi|435851244|ref|YP_007312830.1| - 8.8e-35 119.4 0.6 9.9e-35 119.2 0.6 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.21 gi|435851245|ref|YP_007312831.1| - 2.5e-127 424.9 42.4 2.8e-127 424.8 42.4 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family MOEP19 PF16005.5 gi|435851246|ref|YP_007312832.1| - 0.16 12.0 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 KH-like RNA-binding domain UPF0047 PF01894.17 gi|435851247|ref|YP_007312833.1| - 5e-40 136.2 0.0 5.7e-40 136.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 z-alpha PF02295.17 gi|435851248|ref|YP_007312834.1| - 0.00057 19.9 0.0 0.00065 19.7 0.0 1.1 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain MarR_2 PF12802.7 gi|435851248|ref|YP_007312834.1| - 0.0012 18.7 0.0 0.0013 18.6 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|435851248|ref|YP_007312834.1| - 0.0021 17.6 0.0 0.0027 17.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|435851248|ref|YP_007312834.1| - 0.0053 16.6 0.2 0.012 15.4 0.2 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|435851248|ref|YP_007312834.1| - 0.016 15.0 0.0 0.02 14.7 0.0 1.1 1 0 0 1 1 1 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|435851248|ref|YP_007312834.1| - 0.019 14.9 0.0 0.02 14.7 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit DUF3783 PF12646.7 gi|435851248|ref|YP_007312834.1| - 0.029 14.3 0.1 0.85 9.6 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3783) Fe_dep_repress PF01325.19 gi|435851248|ref|YP_007312834.1| - 0.033 14.4 0.0 0.042 14.0 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PPR_3 PF13812.6 gi|435851248|ref|YP_007312834.1| - 0.036 14.2 0.0 0.26 11.4 0.0 1.9 2 0 0 2 2 2 0 Pentatricopeptide repeat domain TBPIP PF07106.13 gi|435851248|ref|YP_007312834.1| - 0.072 13.0 0.1 0.11 12.4 0.1 1.3 1 1 0 1 1 1 0 TBPIP/Hop2 winged helix domain Rrf2 PF02082.20 gi|435851248|ref|YP_007312834.1| - 0.074 13.4 0.0 0.088 13.2 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|435851248|ref|YP_007312834.1| - 0.096 12.7 0.0 0.11 12.5 0.0 1.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain SMC_ScpB PF04079.16 gi|435851248|ref|YP_007312834.1| - 0.13 11.8 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB NicO PF03824.16 gi|435851250|ref|YP_007312836.1| - 2.7e-13 49.9 20.5 1.5e-10 40.9 9.0 2.1 1 1 1 2 2 2 2 High-affinity nickel-transport protein DsbD_2 PF13386.6 gi|435851250|ref|YP_007312836.1| - 4.4e-09 36.6 13.3 3.6e-08 33.6 13.0 2.3 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD PF02683.15 gi|435851250|ref|YP_007312836.1| - 2e-07 31.1 14.0 2.1e-07 31.0 13.3 1.4 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region MscS_TM PF12794.7 gi|435851250|ref|YP_007312836.1| - 0.014 14.3 3.0 0.019 13.8 0.5 2.0 1 1 1 2 2 2 0 Mechanosensitive ion channel inner membrane domain 1 DUF4271 PF14093.6 gi|435851250|ref|YP_007312836.1| - 0.021 14.7 4.3 0.036 14.0 4.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4271) RseC_MucC PF04246.12 gi|435851250|ref|YP_007312836.1| - 0.033 14.1 0.1 0.033 14.1 0.1 2.7 2 2 1 3 3 3 0 Positive regulator of sigma(E), RseC/MucC DUF4131 PF13567.6 gi|435851250|ref|YP_007312836.1| - 0.077 12.6 0.0 0.077 12.6 0.0 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) DUF3754 PF12576.8 gi|435851250|ref|YP_007312836.1| - 0.7 9.8 3.2 0.36 10.8 0.6 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3754) Cupin_2 PF07883.11 gi|435851251|ref|YP_007312837.1| - 6.2e-15 54.7 0.0 8.6e-15 54.2 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|435851251|ref|YP_007312837.1| - 0.0055 16.6 0.0 0.0067 16.3 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain KduI PF04962.12 gi|435851251|ref|YP_007312837.1| - 0.007 15.7 0.0 0.0074 15.6 0.0 1.2 1 0 0 1 1 1 1 KduI/IolB family MannoseP_isomer PF01050.18 gi|435851251|ref|YP_007312837.1| - 0.021 14.7 0.1 0.026 14.4 0.1 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Cupin_1 PF00190.22 gi|435851251|ref|YP_007312837.1| - 0.12 11.9 0.0 0.19 11.4 0.0 1.5 1 1 0 1 1 1 0 Cupin Prismane PF03063.20 gi|435851252|ref|YP_007312838.1| - 2e-176 587.7 0.0 2.3e-176 587.5 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family HTH_42 PF06224.12 gi|435851254|ref|YP_007312840.1| - 2.5e-68 231.1 0.6 2.8e-68 230.9 0.6 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1638 PF07796.11 gi|435851255|ref|YP_007312841.1| - 9.5e-37 126.6 0.0 1.2e-36 126.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) TetR_N PF00440.23 gi|435851256|ref|YP_007312842.1| - 4.2e-10 39.3 0.0 6.7e-10 38.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Sigma70_r4_2 PF08281.12 gi|435851256|ref|YP_007312842.1| - 0.002 17.8 0.0 0.0043 16.7 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Terminase_5 PF06056.12 gi|435851256|ref|YP_007312842.1| - 0.012 15.5 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.6 gi|435851256|ref|YP_007312842.1| - 0.082 12.7 0.1 0.32 10.9 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain LexA_DNA_bind PF01726.16 gi|435851256|ref|YP_007312842.1| - 0.096 12.5 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain AAA_13 PF13166.6 gi|435851257|ref|YP_007312843.1| - 2.3e-159 532.4 47.1 2.6e-159 532.2 47.1 1.0 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|435851257|ref|YP_007312843.1| - 2e-08 34.4 23.0 0.0001 22.2 12.3 3.7 3 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|435851257|ref|YP_007312843.1| - 0.0089 16.6 4.9 0.051 14.1 1.4 3.0 2 1 0 2 2 2 1 ABC transporter SbcCD_C PF13558.6 gi|435851257|ref|YP_007312843.1| - 0.037 14.3 0.0 0.083 13.1 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit zinc_ribbon_16 PF17034.5 gi|435851257|ref|YP_007312843.1| - 0.27 11.5 2.1 3.8 7.7 0.0 3.5 4 0 0 4 4 4 0 Zinc-ribbon like family HR1 PF02185.16 gi|435851257|ref|YP_007312843.1| - 1 9.6 6.0 13 5.9 0.9 3.1 2 0 0 2 2 2 0 Hr1 repeat SMC_N PF02463.19 gi|435851257|ref|YP_007312843.1| - 2.5 7.5 27.1 7 6.0 23.2 2.7 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF5344 PF17279.2 gi|435851257|ref|YP_007312843.1| - 9 7.0 13.2 2.5 8.8 1.0 4.1 3 1 1 4 4 4 0 Family of unknown function (DUF5344) FlpD PF02662.16 gi|435851258|ref|YP_007312844.1| - 3.7e-52 175.5 5.3 1.2e-51 173.9 0.1 3.7 4 0 0 4 4 4 1 Methyl-viologen-reducing hydrogenase, delta subunit Pyr_redox_2 PF07992.14 gi|435851258|ref|YP_007312844.1| - 5.1e-19 68.6 0.0 1.4e-18 67.2 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|435851258|ref|YP_007312844.1| - 9.8e-16 56.8 54.9 1.4e-08 34.2 4.0 5.7 6 1 0 6 6 4 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|435851258|ref|YP_007312844.1| - 2.1e-13 49.7 51.1 1.4e-05 24.9 3.9 5.7 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435851258|ref|YP_007312844.1| - 5.4e-13 49.3 42.0 1.4e-06 28.8 11.9 5.5 3 2 3 6 6 6 5 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435851258|ref|YP_007312844.1| - 2.6e-12 46.7 36.3 6.2e-07 29.4 0.3 5.0 4 1 2 6 6 5 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435851258|ref|YP_007312844.1| - 3.5e-12 47.1 23.8 0.00081 20.3 0.1 5.3 5 0 0 5 5 5 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|435851258|ref|YP_007312844.1| - 7.4e-12 45.2 50.5 3e-07 30.5 12.7 5.9 7 0 0 7 7 6 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435851258|ref|YP_007312844.1| - 7.8e-11 41.4 44.3 8.6e-05 22.4 2.0 6.0 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435851258|ref|YP_007312844.1| - 8.1e-10 38.7 39.4 1e-06 28.8 11.4 4.7 3 2 2 6 6 6 3 4Fe-4S dicluster domain FAD_oxidored PF12831.7 gi|435851258|ref|YP_007312844.1| - 9e-07 28.6 0.1 1.5e-06 27.8 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|435851258|ref|YP_007312844.1| - 1.1e-06 28.0 0.7 2e-06 27.2 0.7 1.4 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|435851258|ref|YP_007312844.1| - 1.1e-06 28.0 0.3 2e-05 23.9 0.1 2.4 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|435851258|ref|YP_007312844.1| - 1.4e-06 28.4 0.0 3.2e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_8 PF13183.6 gi|435851258|ref|YP_007312844.1| - 1.6e-06 28.5 29.2 0.02 15.3 2.5 5.0 4 1 0 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435851258|ref|YP_007312844.1| - 3.7e-06 27.4 30.8 0.0022 18.5 6.9 4.2 4 0 0 4 4 3 3 4Fe-4S dicluster domain Pyr_redox PF00070.27 gi|435851258|ref|YP_007312844.1| - 6.7e-06 26.6 2.0 1.3e-05 25.7 0.4 2.3 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_4 PF12800.7 gi|435851258|ref|YP_007312844.1| - 1.4e-05 25.2 34.0 0.026 15.0 1.6 5.2 4 0 0 4 4 4 3 4Fe-4S binding domain DAO PF01266.24 gi|435851258|ref|YP_007312844.1| - 2.3e-05 24.1 0.5 0.0019 17.8 0.8 2.5 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|435851258|ref|YP_007312844.1| - 7.3e-05 22.2 0.1 0.00029 20.2 0.1 1.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|435851258|ref|YP_007312844.1| - 8.4e-05 21.4 0.6 0.00014 20.7 0.6 1.3 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|435851258|ref|YP_007312844.1| - 0.00051 19.4 0.4 0.0011 18.3 0.4 1.5 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|435851258|ref|YP_007312844.1| - 0.00082 18.7 0.1 0.0023 17.3 0.1 1.7 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|435851258|ref|YP_007312844.1| - 0.0044 17.4 0.1 0.041 14.3 0.0 2.6 2 1 0 2 2 2 1 Putative NAD(P)-binding Thi4 PF01946.17 gi|435851258|ref|YP_007312844.1| - 0.0052 16.0 0.4 0.017 14.4 0.1 1.9 2 0 0 2 2 2 1 Thi4 family K_oxygenase PF13434.6 gi|435851258|ref|YP_007312844.1| - 0.025 13.7 0.1 5 6.2 0.0 2.6 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Fer4_22 PF17179.4 gi|435851258|ref|YP_007312844.1| - 0.068 14.0 0.2 0.068 14.0 0.2 5.1 5 1 1 6 6 4 0 4Fe-4S dicluster domain Trp_halogenase PF04820.14 gi|435851258|ref|YP_007312844.1| - 0.15 10.9 0.6 0.54 9.0 0.4 1.8 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|435851258|ref|YP_007312844.1| - 0.17 11.9 0.1 2.3 8.2 0.1 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|435851258|ref|YP_007312844.1| - 0.19 11.0 0.2 1.4 8.1 0.0 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Fer4_15 PF13459.6 gi|435851258|ref|YP_007312844.1| - 0.2 12.4 26.4 0.27 12.0 1.2 4.7 3 1 1 4 4 4 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|435851258|ref|YP_007312844.1| - 0.67 10.5 32.0 0.31 11.6 1.4 4.5 4 0 0 4 4 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|435851259|ref|YP_007312845.1| - 3.7e-38 127.8 68.5 3.6e-07 29.7 2.0 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435851259|ref|YP_007312845.1| - 5.9e-32 110.0 56.4 6.8e-11 42.6 6.4 4.7 3 1 1 5 5 5 5 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435851259|ref|YP_007312845.1| - 1e-27 96.0 61.0 4.7e-06 26.6 6.6 6.8 4 2 3 7 7 7 7 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435851259|ref|YP_007312845.1| - 1.4e-26 92.4 52.7 1.3e-07 31.6 7.8 5.4 3 2 3 6 6 6 6 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435851259|ref|YP_007312845.1| - 1.9e-23 81.5 70.7 0.00085 19.3 1.4 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_21 PF14697.6 gi|435851259|ref|YP_007312845.1| - 3.4e-22 78.3 56.4 6.4e-06 26.2 5.9 5.9 4 1 2 6 6 6 6 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435851259|ref|YP_007312845.1| - 4.3e-17 61.1 70.2 0.00017 21.5 1.2 8.3 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_16 PF13484.6 gi|435851259|ref|YP_007312845.1| - 5.6e-17 62.4 58.2 0.0037 18.2 0.2 7.5 4 3 3 7 7 7 5 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|435851259|ref|YP_007312845.1| - 7.1e-11 42.4 60.8 0.0042 17.5 8.6 6.7 2 1 5 7 7 7 6 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|435851259|ref|YP_007312845.1| - 1.4e-09 38.6 50.9 0.032 15.0 0.1 8.0 8 0 0 8 8 8 5 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|435851259|ref|YP_007312845.1| - 4.3e-09 36.8 65.5 0.0041 17.6 9.7 7.3 2 2 6 8 8 8 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435851259|ref|YP_007312845.1| - 4e-07 30.0 71.3 0.012 16.1 2.2 8.2 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_13 PF13370.6 gi|435851259|ref|YP_007312845.1| - 9.1e-06 26.1 68.4 0.34 11.5 1.1 8.4 7 1 1 8 8 8 5 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|435851259|ref|YP_007312845.1| - 9.4e-05 23.1 91.9 0.037 15.0 5.4 8.3 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_18 PF13746.6 gi|435851259|ref|YP_007312845.1| - 0.0025 18.0 52.2 0.073 13.3 6.7 6.9 4 2 2 6 6 5 4 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|435851259|ref|YP_007312845.1| - 0.22 12.4 0.2 0.22 12.4 0.2 8.1 5 2 4 10 10 10 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|435851259|ref|YP_007312845.1| - 0.73 10.0 23.5 0.15 12.2 0.4 4.6 4 1 1 5 5 5 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S GatB_N PF02934.15 gi|435851260|ref|YP_007312846.1| - 1.1e-64 218.5 0.0 1.5e-64 218.1 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.14 gi|435851260|ref|YP_007312846.1| - 1.8e-17 63.3 0.1 4.7e-17 62.0 0.1 1.7 1 0 0 1 1 1 1 GAD domain GatB_Yqey PF02637.18 gi|435851260|ref|YP_007312846.1| - 1.8e-15 57.1 0.0 3.4e-15 56.2 0.0 1.5 1 0 0 1 1 1 1 GatB domain YqeY PF09424.10 gi|435851260|ref|YP_007312846.1| - 0.00013 22.1 0.3 0.00033 20.7 0.3 1.7 1 0 0 1 1 1 1 Yqey-like protein PD40 PF07676.12 gi|435851261|ref|YP_007312847.1| - 0.0057 16.6 0.0 0.0092 15.9 0.0 1.3 1 0 0 1 1 1 1 WD40-like Beta Propeller Repeat CPSase_sm_chain PF00988.22 gi|435851262|ref|YP_007312848.1| - 8.7e-46 154.9 0.0 1.6e-45 154.0 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|435851262|ref|YP_007312848.1| - 4.7e-40 137.4 0.0 7.2e-40 136.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|435851262|ref|YP_007312848.1| - 1.5e-05 24.8 0.3 0.028 14.2 0.1 2.2 1 1 1 2 2 2 2 Peptidase C26 DJ-1_PfpI PF01965.24 gi|435851262|ref|YP_007312848.1| - 0.041 13.7 0.0 0.079 12.8 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family CPSase_L_D2 PF02786.17 gi|435851263|ref|YP_007312849.1| - 8.2e-108 358.8 0.7 7.7e-71 237.9 0.1 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|435851263|ref|YP_007312849.1| - 6.8e-42 142.7 0.0 1.8e-41 141.3 0.0 1.8 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 gi|435851263|ref|YP_007312849.1| - 9.4e-24 83.4 1.7 3.6e-22 78.4 0.1 3.9 4 0 0 4 4 4 1 MGS-like domain ATP-grasp PF02222.22 gi|435851263|ref|YP_007312849.1| - 2.9e-18 66.0 0.0 4.3e-09 36.2 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|435851263|ref|YP_007312849.1| - 2.3e-17 63.2 0.0 1.1e-07 31.6 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|435851263|ref|YP_007312849.1| - 1.2e-15 57.4 0.0 1.3e-06 28.2 0.0 3.0 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|435851263|ref|YP_007312849.1| - 4.9e-14 52.7 0.3 1.2e-05 25.4 0.1 2.5 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|435851263|ref|YP_007312849.1| - 0.0029 17.1 0.0 0.06 12.8 0.0 2.6 2 0 0 2 2 2 1 ATP-grasp domain MerR-DNA-bind PF09278.11 gi|435851263|ref|YP_007312849.1| - 0.012 16.1 0.0 1.1 9.8 0.0 3.4 3 0 0 3 3 3 0 MerR, DNA binding B12-binding PF02310.19 gi|435851263|ref|YP_007312849.1| - 0.029 14.4 0.1 2.2 8.3 0.0 3.4 3 0 0 3 3 3 0 B12 binding domain Epimerase PF01370.21 gi|435851263|ref|YP_007312849.1| - 0.1 12.0 0.0 0.8 9.1 0.0 2.5 3 0 0 3 3 3 0 NAD dependent epimerase/dehydratase family DUF4224 PF13986.6 gi|435851263|ref|YP_007312849.1| - 1.7 8.6 3.2 39 4.2 0.0 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4224) Arginosuc_synth PF00764.19 gi|435851264|ref|YP_007312850.1| - 7.9e-176 585.0 0.0 9e-176 584.9 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|435851264|ref|YP_007312850.1| - 0.00031 20.3 0.0 0.00098 18.7 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|435851264|ref|YP_007312850.1| - 0.011 14.9 0.0 0.019 14.1 0.0 1.4 1 0 0 1 1 1 0 NAD synthase PGF-CTERM PF18204.1 gi|435851266|ref|YP_007312852.1| - 0.077 13.0 0.4 0.077 13.0 0.4 1.7 2 0 0 2 2 2 0 PGF-CTERM motif Herpes_LMP1 PF05297.11 gi|435851266|ref|YP_007312852.1| - 0.74 9.0 4.5 1.3 8.1 4.5 1.4 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Cys_Met_Meta_PP PF01053.20 gi|435851267|ref|YP_007312853.1| - 6.7e-145 482.4 0.0 7.6e-145 482.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|435851267|ref|YP_007312853.1| - 2e-12 47.1 0.4 3.1e-12 46.5 0.4 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|435851267|ref|YP_007312853.1| - 1.2e-05 24.4 0.1 2.1e-05 23.7 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|435851267|ref|YP_007312853.1| - 3.9e-05 23.0 0.0 6.5e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|435851267|ref|YP_007312853.1| - 0.00095 18.5 0.0 0.0017 17.7 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Met_gamma_lyase PF06838.11 gi|435851267|ref|YP_007312853.1| - 0.004 15.7 0.1 1.1 7.7 0.0 2.2 2 0 0 2 2 2 2 Methionine gamma-lyase GDC-P PF02347.16 gi|435851267|ref|YP_007312853.1| - 0.069 12.0 0.0 0.1 11.4 0.0 1.1 1 0 0 1 1 1 0 Glycine cleavage system P-protein Abhydrolase_1 PF00561.20 gi|435851268|ref|YP_007312854.1| - 2.4e-35 122.4 0.1 3e-35 122.1 0.1 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold CBS PF00571.28 gi|435851268|ref|YP_007312854.1| - 9.6e-27 93.2 0.4 4.4e-12 46.3 0.0 2.7 3 0 0 3 3 3 2 CBS domain Hydrolase_4 PF12146.8 gi|435851268|ref|YP_007312854.1| - 0.00056 19.2 0.0 0.0047 16.2 0.0 2.0 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|435851268|ref|YP_007312854.1| - 0.00088 19.9 0.0 0.0015 19.2 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.20 gi|435851268|ref|YP_007312854.1| - 0.0016 18.1 0.0 0.0026 17.4 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Response_reg PF00072.24 gi|435851269|ref|YP_007312855.1| - 2.4e-28 98.6 0.4 6.4e-28 97.2 0.4 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|435851269|ref|YP_007312855.1| - 3.3e-21 75.5 0.4 1.9e-10 40.9 0.0 3.0 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.26 gi|435851269|ref|YP_007312855.1| - 3.9e-19 69.2 0.2 8.6e-19 68.1 0.2 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|435851269|ref|YP_007312855.1| - 8e-15 54.9 0.0 1.6e-06 28.3 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|435851269|ref|YP_007312855.1| - 1.4e-14 54.2 0.0 1.1e-08 35.3 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|435851269|ref|YP_007312855.1| - 6.5e-14 51.9 0.0 1.1e-05 25.3 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|435851269|ref|YP_007312855.1| - 8.7e-08 32.0 0.1 0.00063 19.7 0.0 3.1 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.7 gi|435851269|ref|YP_007312855.1| - 0.00085 19.5 0.0 5.4 7.2 0.0 3.5 3 1 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.6 gi|435851269|ref|YP_007312855.1| - 0.054 13.5 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|435851269|ref|YP_007312855.1| - 0.062 13.4 0.7 0.18 11.8 0.0 2.2 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Beta_protein PF14350.6 gi|435851269|ref|YP_007312855.1| - 0.18 11.2 0.4 0.37 10.2 0.4 1.4 1 0 0 1 1 1 0 Beta protein GDE_C PF06202.14 gi|435851270|ref|YP_007312856.1| - 1.9e-125 418.8 0.0 2.5e-125 418.4 0.0 1.1 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.8 gi|435851270|ref|YP_007312856.1| - 4.5e-72 242.0 0.0 6.3e-72 241.5 0.0 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal Bac_rhamnosid6H PF17389.2 gi|435851270|ref|YP_007312856.1| - 5.4e-06 25.9 0.5 1.1e-05 24.8 0.3 1.5 2 0 0 2 2 2 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain Glyco_hydro_100 PF12899.7 gi|435851270|ref|YP_007312856.1| - 1.4e-05 23.9 0.1 0.064 11.9 0.0 2.2 2 0 0 2 2 2 2 Alkaline and neutral invertase DUF608 PF04685.13 gi|435851270|ref|YP_007312856.1| - 0.00087 18.6 0.7 0.0014 17.9 0.7 1.3 1 0 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Trehalase PF01204.18 gi|435851270|ref|YP_007312856.1| - 0.033 13.0 0.0 0.052 12.4 0.0 1.2 1 0 0 1 1 1 0 Trehalase Glyco_hydro_15 PF00723.21 gi|435851271|ref|YP_007312857.1| - 7.5e-16 57.9 0.0 3.4e-09 36.0 0.0 3.4 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 V4R PF02830.18 gi|435851272|ref|YP_007312858.1| - 3.5e-16 59.0 0.1 5.6e-16 58.3 0.1 1.3 1 0 0 1 1 1 1 V4R domain ACT_4 PF13291.6 gi|435851272|ref|YP_007312858.1| - 0.0089 16.6 0.0 0.021 15.4 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|435851272|ref|YP_007312858.1| - 0.13 12.1 0.0 0.33 10.8 0.0 1.7 1 0 0 1 1 1 0 ACT domain Glyco_hydro_57 PF03065.15 gi|435851273|ref|YP_007312859.1| - 1.5e-65 221.6 0.7 1.8e-65 221.3 0.7 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|435851273|ref|YP_007312859.1| - 1.3e-05 25.1 0.0 2.1e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.15 gi|435851274|ref|YP_007312860.1| - 1.2e-41 142.9 0.0 4.1e-41 141.2 0.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|435851274|ref|YP_007312860.1| - 0.083 12.8 0.0 0.27 11.1 0.0 1.7 1 1 1 2 2 2 0 Polysaccharide deacetylase Glycogen_syn PF05693.13 gi|435851275|ref|YP_007312861.1| - 2.5e-16 59.4 0.1 7.9e-08 31.3 0.0 2.6 2 1 0 2 2 2 2 Glycogen synthase Glyco_transf_4 PF13439.6 gi|435851275|ref|YP_007312861.1| - 2.1e-07 31.1 0.1 3.6e-07 30.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|435851275|ref|YP_007312861.1| - 0.0018 17.9 0.0 0.026 14.0 0.0 2.7 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|435851275|ref|YP_007312861.1| - 0.17 11.6 0.1 0.56 9.8 0.0 1.9 2 0 0 2 2 2 0 Starch synthase catalytic domain DUF4921 PF16268.5 gi|435851276|ref|YP_007312862.1| - 2.3e-19 69.5 0.2 1.5e-15 57.0 0.1 2.6 1 1 0 2 2 2 2 Domain of unknown function (DUF4921) GalP_UDP_transf PF01087.22 gi|435851276|ref|YP_007312862.1| - 5.9e-09 36.6 0.1 1.5e-08 35.3 0.1 1.8 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain HIT PF01230.23 gi|435851276|ref|YP_007312862.1| - 1.2e-08 35.6 0.0 0.0081 16.9 0.0 2.4 2 0 0 2 2 2 2 HIT domain DUF4931 PF16285.5 gi|435851276|ref|YP_007312862.1| - 2e-08 33.8 0.5 3.8e-07 29.7 0.5 2.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4931) GalP_UDP_tr_C PF02744.17 gi|435851276|ref|YP_007312862.1| - 2.1e-08 34.1 0.0 1e-07 31.8 0.0 2.3 2 1 0 2 2 2 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DcpS_C PF11969.8 gi|435851276|ref|YP_007312862.1| - 9.6e-05 22.8 1.7 0.0012 19.3 0.2 2.5 2 1 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding Glycos_transf_1 PF00534.20 gi|435851277|ref|YP_007312863.1| - 7.3e-29 100.5 0.0 1.3e-28 99.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|435851277|ref|YP_007312863.1| - 1.4e-24 87.0 0.0 2.6e-24 86.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|435851277|ref|YP_007312863.1| - 3.3e-23 82.5 1.0 4.1e-23 82.2 0.3 1.5 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|435851277|ref|YP_007312863.1| - 1.4e-15 58.1 0.0 2.2e-15 57.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|435851277|ref|YP_007312863.1| - 1.8e-14 54.0 1.5 3.2e-13 50.0 1.5 2.2 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|435851277|ref|YP_007312863.1| - 8.2e-09 35.6 0.0 1.4e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|435851277|ref|YP_007312863.1| - 0.012 16.0 0.0 0.029 14.8 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 NIF3 PF01784.18 gi|435851279|ref|YP_007312865.1| - 5.7e-55 186.6 0.0 7.1e-55 186.3 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) ATPase PF06745.13 gi|435851280|ref|YP_007312866.1| - 6.9e-48 163.0 0.0 1.4e-47 162.0 0.0 1.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|435851280|ref|YP_007312866.1| - 8.5e-08 32.0 0.0 0.0062 16.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain DnaB_C PF03796.15 gi|435851280|ref|YP_007312866.1| - 2.1e-05 24.0 0.0 3.4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|435851280|ref|YP_007312866.1| - 0.0018 18.0 1.0 1.9 8.2 0.3 2.9 2 1 0 2 2 2 2 AAA domain Rad51 PF08423.11 gi|435851280|ref|YP_007312866.1| - 0.014 14.7 0.5 2.4 7.3 0.2 2.1 2 0 0 2 2 2 0 Rad51 AAA_22 PF13401.6 gi|435851280|ref|YP_007312866.1| - 0.055 13.8 0.1 0.41 10.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|435851280|ref|YP_007312866.1| - 0.066 13.1 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_14 PF13173.6 gi|435851280|ref|YP_007312866.1| - 0.078 13.0 0.0 0.16 12.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|435851280|ref|YP_007312866.1| - 0.16 12.3 0.0 0.22 11.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|435851280|ref|YP_007312866.1| - 0.32 11.4 1.2 0.77 10.2 1.2 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PAS PF00989.25 gi|435851282|ref|YP_007312868.1| - 4.4e-36 123.3 0.1 3.5e-11 43.1 0.0 4.6 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|435851282|ref|YP_007312868.1| - 4.7e-35 120.0 3.2 2.1e-09 37.6 0.0 5.3 5 0 0 5 5 5 4 PAS domain HATPase_c PF02518.26 gi|435851282|ref|YP_007312868.1| - 5.9e-31 107.3 0.4 1.7e-30 105.8 0.4 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|435851282|ref|YP_007312868.1| - 6.7e-29 100.4 0.0 5.1e-08 33.1 0.0 4.3 4 0 0 4 4 4 4 PAS fold HisKA PF00512.25 gi|435851282|ref|YP_007312868.1| - 2.7e-19 69.0 0.1 7.8e-19 67.5 0.1 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 gi|435851282|ref|YP_007312868.1| - 1.4e-16 60.5 0.1 2.1e-07 31.1 0.0 4.8 5 0 0 5 5 5 3 PAS fold PAS_8 PF13188.7 gi|435851282|ref|YP_007312868.1| - 8.6e-14 51.2 0.1 4.4e-06 26.6 0.0 5.0 5 0 0 5 5 5 4 PAS domain HATPase_c_5 PF14501.6 gi|435851282|ref|YP_007312868.1| - 0.00013 21.8 0.6 0.00035 20.4 0.1 2.1 2 0 0 2 2 2 1 GHKL domain PAS_7 PF12860.7 gi|435851282|ref|YP_007312868.1| - 0.033 14.4 0.1 21 5.3 0.0 3.5 3 1 0 3 3 3 0 PAS fold bMG10 PF17973.1 gi|435851283|ref|YP_007312869.1| - 1.5e-06 28.4 0.0 0.7 10.1 0.0 3.3 2 1 1 3 3 3 3 Bacterial Alpha-2-macroglobulin MG10 domain DUF11 PF01345.18 gi|435851283|ref|YP_007312869.1| - 3.3e-06 27.3 0.0 0.00026 21.2 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function DUF11 Top6b_C PF18000.1 gi|435851283|ref|YP_007312869.1| - 1.1e-05 25.6 0.0 0.023 14.9 0.0 2.7 2 1 0 2 2 2 2 Type 2 DNA topoisomerase 6 subunit B C-terminal domain DHHA1 PF02272.19 gi|435851284|ref|YP_007312870.1| - 1.3e-08 35.4 0.0 4.9e-08 33.5 0.0 2.1 2 1 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|435851284|ref|YP_007312870.1| - 7.4e-06 26.1 0.0 1.4e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 DHH family SEC-C PF02810.15 gi|435851284|ref|YP_007312870.1| - 0.065 13.2 0.0 0.065 13.2 0.0 2.0 2 0 0 2 2 2 0 SEC-C motif MMR_HSR1 PF01926.23 gi|435851285|ref|YP_007312871.1| - 1e-20 73.9 0.0 1.4e-20 73.5 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|435851285|ref|YP_007312871.1| - 8.9e-15 54.5 1.0 6.1e-14 51.8 1.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|435851285|ref|YP_007312871.1| - 6.8e-06 25.7 0.2 3.3e-05 23.5 0.1 2.0 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|435851285|ref|YP_007312871.1| - 0.0001 22.4 0.1 0.00021 21.4 0.1 1.4 1 1 0 1 1 1 1 Dynamin family RsgA_GTPase PF03193.16 gi|435851285|ref|YP_007312871.1| - 0.00014 21.8 4.9 0.062 13.2 0.5 3.0 2 2 0 2 2 2 2 RsgA GTPase MeaB PF03308.16 gi|435851285|ref|YP_007312871.1| - 0.0035 16.4 3.0 0.076 12.0 0.1 2.3 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRPRB PF09439.10 gi|435851285|ref|YP_007312871.1| - 0.012 15.1 1.0 0.25 10.8 0.4 2.5 1 1 1 2 2 2 0 Signal recognition particle receptor beta subunit AAA_22 PF13401.6 gi|435851285|ref|YP_007312871.1| - 0.013 15.7 0.6 0.15 12.3 0.6 2.2 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|435851285|ref|YP_007312871.1| - 0.02 15.4 0.0 0.039 14.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain Roc PF08477.13 gi|435851285|ref|YP_007312871.1| - 0.021 15.1 0.8 0.15 12.3 0.1 2.3 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1_Xtn PF16897.5 gi|435851285|ref|YP_007312871.1| - 0.036 14.1 1.1 0.13 12.3 0.1 2.1 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain Arf PF00025.21 gi|435851285|ref|YP_007312871.1| - 0.038 13.4 0.6 1.5 8.3 0.0 2.1 2 0 0 2 2 2 0 ADP-ribosylation factor family AIG1 PF04548.16 gi|435851285|ref|YP_007312871.1| - 0.041 13.2 0.0 0.078 12.3 0.0 1.5 1 0 0 1 1 1 0 AIG1 family Septin PF00735.18 gi|435851285|ref|YP_007312871.1| - 0.072 12.3 2.2 0.39 9.9 2.2 2.3 1 1 0 1 1 1 0 Septin G-alpha PF00503.20 gi|435851285|ref|YP_007312871.1| - 0.1 11.7 0.2 9.3 5.3 0.0 2.1 2 0 0 2 2 2 0 G-protein alpha subunit Diphtheria_C PF02763.14 gi|435851285|ref|YP_007312871.1| - 0.17 11.5 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 Diphtheria toxin, C domain Phosphorylase PF00343.20 gi|435851286|ref|YP_007312872.1| - 7.1e-36 123.8 0.6 4.2e-23 81.5 0.0 4.0 3 1 0 3 3 3 3 Carbohydrate phosphorylase DUF3417 PF11897.8 gi|435851286|ref|YP_007312872.1| - 0.14 12.6 0.1 0.65 10.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3417) DUF4177 PF13783.6 gi|435851288|ref|YP_007312874.1| - 9.9e-05 22.6 0.1 0.00012 22.3 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) Aconitase PF00330.20 gi|435851289|ref|YP_007312875.1| - 8e-173 575.7 0.0 1.1e-172 575.2 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|435851289|ref|YP_007312875.1| - 1.8e-44 151.2 0.0 3.8e-44 150.2 0.0 1.6 1 0 0 1 1 1 1 Aconitase C-terminal domain zinc_ribbon_6 PF14599.6 gi|435851290|ref|YP_007312876.1| - 0.018 15.1 2.6 0.11 12.6 0.1 2.0 1 1 1 2 2 2 0 Zinc-ribbon DNA_RNApol_7kD PF03604.13 gi|435851290|ref|YP_007312876.1| - 0.16 11.7 2.4 0.38 10.5 2.4 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-trcl PF13451.6 gi|435851290|ref|YP_007312876.1| - 0.24 11.3 2.7 4.8 7.2 0.4 2.2 2 0 0 2 2 2 0 Probable zinc-ribbon domain ArfGap PF01412.18 gi|435851290|ref|YP_007312876.1| - 0.31 11.1 1.4 0.59 10.2 1.4 1.4 1 1 0 1 1 1 0 Putative GTPase activating protein for Arf Citrate_synt PF00285.21 gi|435851291|ref|YP_007312877.1| - 1.2e-122 409.4 0.0 1.4e-122 409.3 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain Chordopox_G2 PF05796.12 gi|435851291|ref|YP_007312877.1| - 0.042 13.3 0.1 0.077 12.4 0.1 1.3 1 0 0 1 1 1 0 Chordopoxvirus protein G2 Polyketide_cyc2 PF10604.9 gi|435851292|ref|YP_007312878.1| - 4.1e-07 30.4 0.0 4.8e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|435851292|ref|YP_007312878.1| - 0.064 13.5 0.0 0.087 13.0 0.0 1.4 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport DUF2582 PF10771.9 gi|435851294|ref|YP_007312880.1| - 5.2e-18 65.0 0.0 5.5e-18 64.9 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix domain (DUF2582) DUF494 PF04361.13 gi|435851294|ref|YP_007312880.1| - 0.017 15.0 0.0 0.019 14.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF494) Fer4_5 PF12801.7 gi|435851296|ref|YP_007312882.1| - 1.5e-13 50.4 8.6 2.2e-11 43.5 1.9 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4 PF00037.27 gi|435851296|ref|YP_007312882.1| - 8.8e-09 34.8 22.6 1.1e-05 25.0 3.1 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435851296|ref|YP_007312882.1| - 9.8e-09 35.7 12.0 0.00099 19.6 3.8 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435851296|ref|YP_007312882.1| - 1.9e-08 34.3 16.2 4.4e-06 26.8 14.9 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|435851296|ref|YP_007312882.1| - 7.2e-08 32.6 11.5 7.2e-08 32.6 11.5 1.9 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435851296|ref|YP_007312882.1| - 8.7e-07 29.0 27.8 2.5e-06 27.5 16.1 2.9 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435851296|ref|YP_007312882.1| - 2.9e-06 27.3 19.5 5.3e-05 23.3 4.1 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435851296|ref|YP_007312882.1| - 9.5e-06 25.5 18.4 0.0023 17.9 4.0 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|435851296|ref|YP_007312882.1| - 4.4e-05 23.9 17.1 0.0047 17.4 6.3 3.0 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435851296|ref|YP_007312882.1| - 0.00012 21.9 1.6 0.00012 21.9 1.6 3.1 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|435851296|ref|YP_007312882.1| - 0.00029 21.7 18.6 0.0027 18.6 2.3 3.0 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|435851296|ref|YP_007312882.1| - 0.0041 17.9 11.8 0.13 13.1 2.2 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435851296|ref|YP_007312882.1| - 0.0045 17.8 2.2 0.0045 17.8 2.2 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|435851296|ref|YP_007312882.1| - 0.0078 16.7 15.3 0.067 13.7 1.7 2.7 3 0 0 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|435851296|ref|YP_007312882.1| - 0.039 14.1 2.2 0.039 14.1 2.2 1.9 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_8 PF13183.6 gi|435851296|ref|YP_007312882.1| - 0.05 14.0 20.9 0.063 13.7 3.7 2.6 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435851296|ref|YP_007312882.1| - 0.075 13.6 2.6 0.075 13.6 2.6 3.3 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|435851296|ref|YP_007312882.1| - 3.4 8.5 9.4 13 6.7 1.6 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain MarR_2 PF12802.7 gi|435851297|ref|YP_007312883.1| - 1.7e-06 27.8 0.0 2.5e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|435851297|ref|YP_007312883.1| - 5.9e-06 26.1 0.0 8.9e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TnsD PF15978.5 gi|435851297|ref|YP_007312883.1| - 0.0024 16.9 0.1 0.0028 16.7 0.1 1.1 1 0 0 1 1 1 1 Tn7-like transposition protein D Mga PF05043.13 gi|435851297|ref|YP_007312883.1| - 0.0067 17.0 0.2 0.014 16.0 0.0 1.6 2 0 0 2 2 2 1 Mga helix-turn-helix domain FUR PF01475.19 gi|435851297|ref|YP_007312883.1| - 0.01 16.0 0.0 0.014 15.5 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_24 PF13412.6 gi|435851297|ref|YP_007312883.1| - 0.013 15.0 0.1 0.034 13.7 0.1 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|435851297|ref|YP_007312883.1| - 0.015 15.3 0.1 0.03 14.3 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|435851297|ref|YP_007312883.1| - 0.016 15.1 0.1 0.036 14.0 0.1 1.6 1 0 0 1 1 1 0 HTH domain TFIIE_alpha PF02002.17 gi|435851297|ref|YP_007312883.1| - 0.017 15.0 1.8 0.022 14.6 1.8 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF3283 PF11686.8 gi|435851297|ref|YP_007312883.1| - 0.017 14.9 0.1 0.039 13.8 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3283) Penicillinase_R PF03965.16 gi|435851297|ref|YP_007312883.1| - 0.017 15.5 0.5 0.024 15.0 0.5 1.3 1 1 0 1 1 1 0 Penicillinase repressor HTH_IclR PF09339.10 gi|435851297|ref|YP_007312883.1| - 0.021 14.6 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain Trans_reg_C PF00486.28 gi|435851297|ref|YP_007312883.1| - 0.024 14.7 0.1 0.056 13.5 0.1 1.8 1 1 0 1 1 1 0 Transcriptional regulatory protein, C terminal MqsR_toxin PF15723.5 gi|435851297|ref|YP_007312883.1| - 0.037 14.4 0.1 0.051 13.9 0.1 1.2 1 0 0 1 1 1 0 Motility quorum-sensing regulator, toxin of MqsA GerE PF00196.19 gi|435851297|ref|YP_007312883.1| - 0.047 13.3 0.2 0.14 11.7 0.2 1.8 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family Replic_Relax PF13814.6 gi|435851297|ref|YP_007312883.1| - 0.076 13.1 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation Fe_dep_repress PF01325.19 gi|435851297|ref|YP_007312883.1| - 0.08 13.2 0.1 0.13 12.5 0.1 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain BPD_transp_1 PF00528.22 gi|435851298|ref|YP_007312884.1| - 3.6e-22 79.0 18.1 4.4e-22 78.7 17.8 1.2 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component MscL PF01741.18 gi|435851298|ref|YP_007312884.1| - 0.61 10.4 6.3 0.52 10.6 4.8 1.6 1 1 0 1 1 1 0 Large-conductance mechanosensitive channel, MscL BPD_transp_1 PF00528.22 gi|435851299|ref|YP_007312885.1| - 5.4e-18 65.4 12.2 7.3e-18 65.0 12.2 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BNIP3 PF06553.12 gi|435851299|ref|YP_007312885.1| - 0.39 10.3 0.5 0.61 9.7 0.5 1.2 1 0 0 1 1 1 0 BNIP3 Kinocilin PF15033.6 gi|435851299|ref|YP_007312885.1| - 5.8 6.6 6.2 2.5 7.8 1.5 2.1 2 0 0 2 2 2 0 Kinocilin protein ABC_tran PF00005.27 gi|435851300|ref|YP_007312886.1| - 2e-33 115.8 0.0 3.9e-33 114.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435851300|ref|YP_007312886.1| - 1.6e-09 38.0 0.4 0.00012 22.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|435851300|ref|YP_007312886.1| - 0.00027 21.4 0.0 0.00043 20.7 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|435851300|ref|YP_007312886.1| - 0.00039 20.7 0.0 0.00082 19.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|435851300|ref|YP_007312886.1| - 0.00076 19.3 0.0 0.0017 18.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|435851300|ref|YP_007312886.1| - 0.0021 17.5 0.0 0.0042 16.5 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI SMC_N PF02463.19 gi|435851300|ref|YP_007312886.1| - 0.003 17.0 0.0 0.16 11.4 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|435851300|ref|YP_007312886.1| - 0.0056 16.6 0.0 0.015 15.2 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 gi|435851300|ref|YP_007312886.1| - 0.0078 15.9 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|435851300|ref|YP_007312886.1| - 0.0083 15.9 0.0 0.016 14.9 0.0 1.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.6 gi|435851300|ref|YP_007312886.1| - 0.0087 15.8 0.0 0.068 12.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|435851300|ref|YP_007312886.1| - 0.01 15.2 0.0 0.019 14.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.29 gi|435851300|ref|YP_007312886.1| - 0.011 16.1 0.0 0.042 14.3 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|435851300|ref|YP_007312886.1| - 0.021 13.9 0.0 0.041 12.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_5 PF07728.14 gi|435851300|ref|YP_007312886.1| - 0.023 14.7 0.0 0.046 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|435851300|ref|YP_007312886.1| - 0.034 14.1 0.0 0.059 13.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_33 PF13671.6 gi|435851300|ref|YP_007312886.1| - 0.036 14.2 0.0 0.11 12.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|435851300|ref|YP_007312886.1| - 0.04 13.1 0.0 0.061 12.5 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_19 PF13245.6 gi|435851300|ref|YP_007312886.1| - 0.045 14.1 0.0 0.1 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|435851300|ref|YP_007312886.1| - 0.058 13.1 0.0 0.088 12.6 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_23 PF13476.6 gi|435851300|ref|YP_007312886.1| - 0.077 13.5 0.2 0.2 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|435851300|ref|YP_007312886.1| - 0.081 13.5 0.0 0.29 11.7 0.0 2.0 2 1 0 2 2 1 0 AAA domain OpuAC PF04069.12 gi|435851301|ref|YP_007312887.1| - 2.1e-57 194.7 5.0 2.4e-57 194.4 5.0 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system Sod_Fe_C PF02777.18 gi|435851302|ref|YP_007312888.1| - 1.6e-34 118.1 0.6 4.6e-34 116.6 0.2 1.8 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|435851302|ref|YP_007312888.1| - 5.9e-27 94.0 1.9 1e-26 93.2 1.9 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain GST_N_3 PF13417.6 gi|435851303|ref|YP_007312889.1| - 0.11 13.0 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain VWA PF00092.28 gi|435851304|ref|YP_007312890.1| - 1.7e-11 44.7 1.0 1.2e-07 32.1 0.1 2.5 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA_2 PF13519.6 gi|435851304|ref|YP_007312890.1| - 4.3e-07 30.5 0.2 3.8e-06 27.5 0.0 2.5 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|435851304|ref|YP_007312890.1| - 2.8e-06 26.9 0.0 0.00014 21.3 0.0 2.8 2 1 1 3 3 3 1 VWA domain containing CoxE-like protein GATase1_like PF07090.11 gi|435851304|ref|YP_007312890.1| - 7.4e-05 22.3 0.1 0.04 13.4 0.0 2.4 2 0 0 2 2 2 2 Putative glutamine amidotransferase Big_3_5 PF16640.5 gi|435851304|ref|YP_007312890.1| - 0.07 13.3 2.6 0.75 10.0 0.1 3.0 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) VWA_3 PF13768.6 gi|435851304|ref|YP_007312890.1| - 0.11 12.5 0.0 0.64 9.9 0.0 2.3 2 0 0 2 2 2 0 von Willebrand factor type A domain BatA PF07584.11 gi|435851305|ref|YP_007312891.1| - 1.5e-13 50.9 16.7 2.3e-13 50.3 12.3 2.3 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_2 PF13519.6 gi|435851305|ref|YP_007312891.1| - 0.00015 22.4 0.6 0.00067 20.3 0.6 2.1 1 1 0 1 1 1 1 von Willebrand factor type A domain ABC_transp_aux PF09822.9 gi|435851305|ref|YP_007312891.1| - 0.00019 21.0 0.1 0.0012 18.3 0.1 2.0 1 1 0 1 1 1 1 ABC-type uncharacterized transport system Birna_VP4 PF01768.16 gi|435851305|ref|YP_007312891.1| - 0.018 14.9 0.1 0.031 14.1 0.1 1.3 1 0 0 1 1 1 0 Birnavirus VP4 protein OppC_N PF12911.7 gi|435851305|ref|YP_007312891.1| - 0.16 12.0 0.1 0.16 12.0 0.1 2.9 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C DUF58 PF01882.18 gi|435851306|ref|YP_007312892.1| - 1.2e-21 76.8 0.0 2.1e-21 76.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|435851306|ref|YP_007312892.1| - 1.9e-05 25.3 0.1 4.1e-05 24.2 0.1 1.6 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|435851306|ref|YP_007312892.1| - 0.0011 18.4 0.2 0.0035 16.8 0.2 1.8 2 1 0 2 2 2 1 VWA domain containing CoxE-like protein VWA PF00092.28 gi|435851306|ref|YP_007312892.1| - 0.064 13.5 0.1 0.1 12.9 0.1 1.5 1 1 0 1 1 1 0 von Willebrand factor type A domain AAA_3 PF07726.11 gi|435851307|ref|YP_007312893.1| - 3.7e-62 208.0 0.1 6.5e-62 207.2 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|435851307|ref|YP_007312893.1| - 2.5e-17 62.5 0.0 4.2e-17 61.8 0.0 1.3 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|435851307|ref|YP_007312893.1| - 7.5e-10 38.9 0.0 1.8e-09 37.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|435851307|ref|YP_007312893.1| - 1.6e-05 25.3 0.0 3.1e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|435851307|ref|YP_007312893.1| - 0.00024 20.3 0.0 0.00043 19.4 0.0 1.5 1 1 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|435851307|ref|YP_007312893.1| - 0.0047 16.7 0.1 0.036 13.8 0.1 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|435851307|ref|YP_007312893.1| - 0.031 14.0 0.4 0.2 11.3 0.1 2.3 2 1 0 2 2 2 0 Sigma-54 interaction domain AAA_19 PF13245.6 gi|435851307|ref|YP_007312893.1| - 0.038 14.3 0.2 0.75 10.1 0.0 2.6 3 0 0 3 3 3 0 AAA domain SecA_DEAD PF07517.14 gi|435851307|ref|YP_007312893.1| - 0.06 12.6 0.1 0.13 11.6 0.1 1.5 1 0 0 1 1 1 0 SecA DEAD-like domain Mg_chelatase PF01078.21 gi|435851307|ref|YP_007312893.1| - 0.061 12.7 0.1 0.58 9.5 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF4064 PF13273.6 gi|435851308|ref|YP_007312894.1| - 0.17 12.2 3.9 2 8.7 2.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) Ost5 PF05251.12 gi|435851308|ref|YP_007312894.1| - 0.22 11.8 7.3 2 8.7 0.3 3.1 2 1 1 3 3 3 0 Oligosaccharyltransferase subunit 5 PDT PF00800.18 gi|435851309|ref|YP_007312895.1| - 1.3e-55 188.1 0.0 1.8e-55 187.6 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|435851309|ref|YP_007312895.1| - 7.1e-09 35.3 0.0 1.5e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 ACT domain dCMP_cyt_deam_1 PF00383.23 gi|435851312|ref|YP_007312898.1| - 8.2e-24 83.4 0.0 1.2e-23 82.9 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|435851312|ref|YP_007312898.1| - 4.9e-22 78.2 0.1 5.9e-22 77.9 0.1 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 gi|435851312|ref|YP_007312898.1| - 0.0076 16.3 0.8 0.13 12.3 0.8 2.2 1 1 0 1 1 1 1 Bd3614-like deaminase SNAD4 PF18750.1 gi|435851312|ref|YP_007312898.1| - 0.016 15.3 0.0 0.027 14.6 0.0 1.3 1 0 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 4 APOBEC2 PF18772.1 gi|435851312|ref|YP_007312898.1| - 0.05 13.6 0.0 0.075 13.1 0.0 1.2 1 0 0 1 1 1 0 APOBEC2 APOBEC3 PF18771.1 gi|435851312|ref|YP_007312898.1| - 0.06 13.5 0.4 0.098 12.8 0.4 1.5 1 1 0 1 1 1 0 APOBEC3 RVT_3 PF13456.6 gi|435851312|ref|YP_007312898.1| - 0.12 12.2 0.0 0.32 10.8 0.0 1.7 2 0 0 2 2 2 0 Reverse transcriptase-like SEFIR PF08357.11 gi|435851314|ref|YP_007312900.1| - 0.057 13.7 0.0 0.073 13.3 0.0 1.2 1 0 0 1 1 1 0 SEFIR domain zinc_ribbon_2 PF13240.6 gi|435851314|ref|YP_007312900.1| - 0.17 11.7 3.1 8.4 6.3 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Cas6b_C PF17262.2 gi|435851316|ref|YP_007312902.1| - 2.9e-44 149.8 0.1 4.8e-44 149.1 0.1 1.4 1 0 0 1 1 1 1 Cas6b C-terminal domain Cas6b_N PF17955.1 gi|435851316|ref|YP_007312902.1| - 6e-39 132.3 0.4 5.5e-36 122.8 0.3 2.2 2 0 0 2 2 2 2 Cas6b N-terminal domain Cas_Cas1 PF01867.16 gi|435851317|ref|YP_007312903.1| - 6.3e-83 278.2 0.1 7.3e-83 278.0 0.1 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Na_Ca_ex_C PF16494.5 gi|435851317|ref|YP_007312903.1| - 0.032 14.7 0.3 0.092 13.2 0.1 1.9 2 0 0 2 2 2 0 C-terminal extension of sodium/calcium exchanger domain YojJ PF10372.9 gi|435851317|ref|YP_007312903.1| - 0.092 12.8 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial membrane-spanning protein N-terminus CRISPR_Cas2 PF09827.9 gi|435851318|ref|YP_007312904.1| - 5.8e-21 74.5 0.4 6.8e-21 74.2 0.4 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Lys PF00062.20 gi|435851318|ref|YP_007312904.1| - 0.017 15.4 0.1 0.022 15.0 0.1 1.1 1 0 0 1 1 1 0 C-type lysozyme/alpha-lactalbumin family Cas_Cas4 PF01930.17 gi|435851319|ref|YP_007312905.1| - 1.3e-19 70.9 6.1 1.7e-19 70.5 6.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|435851319|ref|YP_007312905.1| - 1.5e-07 31.6 3.2 1.8e-07 31.4 1.9 1.6 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily RVT_1 PF00078.27 gi|435851321|ref|YP_007312907.1| - 6.1e-35 120.7 0.0 1e-34 120.0 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.11 gi|435851321|ref|YP_007312907.1| - 2.8e-05 24.1 0.3 0.00022 21.2 0.0 2.4 2 0 0 2 2 2 1 Group II intron, maturase-specific domain RAMPs PF03787.15 gi|435851323|ref|YP_007312909.1| - 4.3e-09 36.7 0.0 6.6e-09 36.1 0.0 1.4 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.15 gi|435851324|ref|YP_007312910.1| - 2e-07 31.3 0.0 1.5e-06 28.5 0.0 2.2 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.15 gi|435851326|ref|YP_007312912.1| - 2.6e-20 73.4 0.0 3.9e-20 72.8 0.0 1.3 1 0 0 1 1 1 1 RAMP superfamily TIR-like PF10137.9 gi|435851329|ref|YP_007312915.1| - 1.3e-28 99.3 0.0 2e-28 98.7 0.0 1.3 1 0 0 1 1 1 1 Predicted nucleotide-binding protein containing TIR-like domain LDcluster4 PF18306.1 gi|435851329|ref|YP_007312915.1| - 0.0026 17.3 0.0 0.0063 16.1 0.0 1.6 1 0 0 1 1 1 1 SLOG cluster4 family Transposase_mut PF00872.18 gi|435851330|ref|YP_007312916.1| - 5.4e-102 341.5 1.4 6.6e-102 341.2 1.4 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 gi|435851330|ref|YP_007312916.1| - 2e-08 34.5 0.0 4.4e-08 33.4 0.0 1.6 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS66 PF03050.14 gi|435851330|ref|YP_007312916.1| - 4.7e-05 23.0 0.0 7.4e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Transposase IS66 family Kinocilin PF15033.6 gi|435851330|ref|YP_007312916.1| - 0.02 14.5 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 Kinocilin protein DDE_Tnp_ISL3 PF01610.17 gi|435851330|ref|YP_007312916.1| - 0.025 14.3 0.1 0.074 12.8 0.0 1.8 1 1 0 1 1 1 0 Transposase EcsC PF12787.7 gi|435851330|ref|YP_007312916.1| - 0.06 13.0 0.4 2.9 7.5 0.1 2.6 2 1 1 3 3 3 0 EcsC protein family Peptidase_C97 PF05903.14 gi|435851330|ref|YP_007312916.1| - 0.13 12.0 0.1 0.35 10.7 0.0 1.7 2 0 0 2 2 2 0 PPPDE putative peptidase domain Glycos_trans_3N PF02885.17 gi|435851332|ref|YP_007312918.1| - 2.4e-19 68.9 0.3 6.9e-19 67.5 0.3 1.9 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PYNP_C PF07831.13 gi|435851332|ref|YP_007312918.1| - 3.3e-14 52.3 0.0 8.5e-14 51.0 0.0 1.8 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.21 gi|435851332|ref|YP_007312918.1| - 2e-12 47.3 2.3 9.7e-12 45.0 0.9 2.5 2 1 0 2 2 2 1 Glycosyl transferase family, a/b domain CDC48_N PF02359.18 gi|435851332|ref|YP_007312918.1| - 2.4e-06 27.6 0.5 1.1e-05 25.5 0.1 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain Molydop_binding PF01568.21 gi|435851332|ref|YP_007312918.1| - 1e-05 25.5 0.1 2.2e-05 24.4 0.1 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF2254 PF10011.9 gi|435851332|ref|YP_007312918.1| - 0.00055 18.9 0.0 0.00088 18.2 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Trm56 PF01994.16 gi|435851333|ref|YP_007312919.1| - 1.6e-48 163.5 0.0 2e-48 163.2 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 DUF3852 PF12963.7 gi|435851334|ref|YP_007312920.1| - 7.8e-05 23.0 1.1 9.7e-05 22.7 1.0 1.2 1 1 0 1 1 1 1 Protein of unknown function (DUF3852) DUF4999 PF16390.5 gi|435851334|ref|YP_007312920.1| - 0.024 14.9 0.0 0.033 14.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function EamA PF00892.20 gi|435851335|ref|YP_007312921.1| - 5e-20 72.1 51.2 3.6e-10 40.1 22.9 2.1 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|435851335|ref|YP_007312921.1| - 0.0004 20.4 10.2 0.12 12.4 2.5 2.9 2 1 0 2 2 2 2 Putative transmembrane family 234 Sugar_transport PF06800.12 gi|435851335|ref|YP_007312921.1| - 0.39 10.0 27.5 0.8 9.0 27.5 1.5 1 1 0 1 1 1 0 Sugar transport protein ABC_tran PF00005.27 gi|435851336|ref|YP_007312922.1| - 2.3e-37 128.5 0.0 3.1e-37 128.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435851336|ref|YP_007312922.1| - 5.9e-13 49.3 0.0 2.1e-05 24.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|435851336|ref|YP_007312922.1| - 1.3e-09 37.9 0.2 9.7e-08 31.7 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|435851336|ref|YP_007312922.1| - 4.3e-05 23.8 0.0 0.00014 22.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|435851336|ref|YP_007312922.1| - 0.00012 22.0 0.0 0.00037 20.3 0.0 1.7 1 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|435851336|ref|YP_007312922.1| - 0.00018 21.1 0.0 0.00038 20.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|435851336|ref|YP_007312922.1| - 0.00089 19.8 0.1 0.0019 18.7 0.0 1.5 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 gi|435851336|ref|YP_007312922.1| - 0.001 18.0 0.1 0.56 8.9 0.1 3.0 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|435851336|ref|YP_007312922.1| - 0.0014 19.0 0.0 0.0019 18.6 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|435851336|ref|YP_007312922.1| - 0.003 17.5 0.3 0.015 15.2 0.0 2.1 3 0 0 3 3 3 1 RsgA GTPase AAA_33 PF13671.6 gi|435851336|ref|YP_007312922.1| - 0.0055 16.9 0.0 0.0085 16.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|435851336|ref|YP_007312922.1| - 0.0067 15.1 0.0 0.088 11.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain G-alpha PF00503.20 gi|435851336|ref|YP_007312922.1| - 0.013 14.7 0.0 0.015 14.5 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit NACHT PF05729.12 gi|435851336|ref|YP_007312922.1| - 0.016 15.1 0.0 0.053 13.4 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_24 PF13479.6 gi|435851336|ref|YP_007312922.1| - 0.02 14.7 0.1 0.056 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|435851336|ref|YP_007312922.1| - 0.054 13.4 0.0 0.079 12.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain SbcCD_C PF13558.6 gi|435851336|ref|YP_007312922.1| - 0.057 13.7 0.1 0.85 9.9 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|435851336|ref|YP_007312922.1| - 0.069 12.9 0.0 0.22 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|435851336|ref|YP_007312922.1| - 0.07 12.2 0.0 0.13 11.3 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein cobW PF02492.19 gi|435851336|ref|YP_007312922.1| - 0.079 12.5 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RNA12 PF10443.9 gi|435851336|ref|YP_007312922.1| - 0.093 11.4 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein AAA_18 PF13238.6 gi|435851336|ref|YP_007312922.1| - 0.097 13.2 0.0 0.15 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|435851337|ref|YP_007312923.1| - 1.3e-25 90.2 6.9 1.6e-25 89.9 6.9 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component LVIVD PF08309.11 gi|435851338|ref|YP_007312924.1| - 4.4e-175 566.8 125.2 4.1e-19 67.6 1.7 15.0 14 1 0 14 14 14 14 LVIVD repeat Beta_propel PF09826.9 gi|435851338|ref|YP_007312924.1| - 7.9e-14 51.4 13.9 2.6e-05 23.3 5.2 8.0 1 1 3 6 6 6 5 Beta propeller domain CPSF_A PF03178.15 gi|435851338|ref|YP_007312924.1| - 5e-06 26.1 0.7 3.1 7.0 0.0 4.8 2 2 3 5 5 5 2 CPSF A subunit region He_PIG PF05345.12 gi|435851338|ref|YP_007312924.1| - 7.6e-06 26.0 3.6 7.6e-06 26.0 3.6 5.9 6 2 1 7 7 7 1 Putative Ig domain VCBS PF13517.6 gi|435851338|ref|YP_007312924.1| - 3.1e-05 24.5 54.9 0.00043 20.8 10.5 8.0 4 3 8 12 12 12 5 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Neocarzinostat PF00960.18 gi|435851338|ref|YP_007312924.1| - 0.06 13.3 0.5 0.33 10.9 0.5 2.4 1 0 0 1 1 1 0 Neocarzinostatin family DUF5103 PF17116.5 gi|435851338|ref|YP_007312924.1| - 0.66 9.2 2.1 13 4.9 0.1 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF5103) WD40 PF00400.32 gi|435851338|ref|YP_007312924.1| - 1.3 10.0 11.3 1.2e+02 3.8 0.0 7.1 7 2 0 7 7 7 0 WD domain, G-beta repeat PQQ_3 PF13570.6 gi|435851338|ref|YP_007312924.1| - 3.4 8.3 107.0 0.57 10.8 0.9 14.6 14 0 0 14 14 14 0 PQQ-like domain Fae PF08714.11 gi|435851339|ref|YP_007312925.1| - 2.7e-72 241.9 1.8 3e-72 241.8 1.8 1.0 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) zf-CDGSH PF09360.10 gi|435851341|ref|YP_007312927.1| - 2.2e-15 56.6 0.1 3.1e-15 56.1 0.1 1.2 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type TrmB PF01978.19 gi|435851342|ref|YP_007312928.1| - 0.0031 17.3 0.0 0.0064 16.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB NinB PF05772.12 gi|435851342|ref|YP_007312928.1| - 0.087 12.6 0.1 0.13 12.1 0.1 1.2 1 0 0 1 1 1 0 NinB protein DUF2551 PF10826.8 gi|435851343|ref|YP_007312929.1| - 1.1e-32 112.1 0.7 1.3e-32 111.8 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.16 gi|435851343|ref|YP_007312929.1| - 0.0097 16.3 0.0 0.013 15.8 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor MFS_1 PF07690.16 gi|435851345|ref|YP_007312931.1| - 1.3e-35 123.0 37.5 2.4e-29 102.4 28.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|435851345|ref|YP_007312931.1| - 1.2e-09 37.5 3.8 1.2e-09 37.5 3.8 2.4 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.13 gi|435851345|ref|YP_007312931.1| - 5.4e-06 25.1 2.2 5.4e-06 25.1 2.2 2.1 1 1 1 2 2 2 1 Transmembrane secretion effector Metalloenzyme PF01676.18 gi|435851346|ref|YP_007312932.1| - 5.7e-13 48.8 0.0 1.1e-12 47.8 0.0 1.6 1 1 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.23 gi|435851346|ref|YP_007312932.1| - 5.8e-09 35.8 0.1 1e-08 35.0 0.1 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|435851346|ref|YP_007312932.1| - 3.7e-07 30.1 0.4 4.1e-06 26.6 0.0 2.3 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Colicin_Ia PF11504.8 gi|435851346|ref|YP_007312932.1| - 0.087 13.0 0.0 0.24 11.5 0.0 1.7 1 0 0 1 1 1 0 Colicin Ia TusA PF01206.17 gi|435851347|ref|YP_007312933.1| - 4.2e-21 74.5 0.1 4.6e-21 74.4 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Arteri_nsp7a PF16749.5 gi|435851347|ref|YP_007312933.1| - 0.14 12.3 0.0 0.16 12.2 0.0 1.1 1 0 0 1 1 1 0 Arterivirus nonstructural protein 7 alpha DrsE_2 PF13686.6 gi|435851348|ref|YP_007312934.1| - 7.7e-35 120.1 0.8 7.4e-21 74.6 0.3 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|435851348|ref|YP_007312934.1| - 9.5e-07 29.2 0.0 1.6e-06 28.5 0.0 1.3 1 1 0 1 1 1 1 DsrE/DsrF-like family Aminotran_5 PF00266.19 gi|435851349|ref|YP_007312935.1| - 2.5e-73 247.2 0.1 3e-73 246.9 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|435851349|ref|YP_007312935.1| - 2e-05 24.0 0.1 2.9e-05 23.5 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|435851349|ref|YP_007312935.1| - 8.5e-05 22.0 0.1 0.00014 21.3 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|435851349|ref|YP_007312935.1| - 0.00086 18.6 0.0 0.0012 18.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|435851349|ref|YP_007312935.1| - 0.0097 14.5 0.2 0.017 13.7 0.2 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.19 gi|435851349|ref|YP_007312935.1| - 0.097 11.4 0.0 0.15 10.7 0.0 1.5 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Transketolase_C PF02780.20 gi|435851349|ref|YP_007312935.1| - 0.13 12.2 0.1 0.31 10.9 0.1 1.6 1 0 0 1 1 1 0 Transketolase, C-terminal domain NifU_N PF01592.16 gi|435851350|ref|YP_007312936.1| - 1.1e-43 148.5 0.1 2.2e-43 147.5 0.0 1.5 2 0 0 2 2 2 1 NifU-like N terminal domain FeS_assembly_P PF01883.19 gi|435851350|ref|YP_007312936.1| - 5.9e-12 45.6 1.3 2.1e-11 43.8 1.3 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein DUF2284 PF10050.9 gi|435851351|ref|YP_007312937.1| - 2.6e-39 134.6 0.1 2.9e-39 134.4 0.1 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) Fer4_9 PF13187.6 gi|435851351|ref|YP_007312937.1| - 0.64 10.2 7.2 1.2 9.4 5.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain TPR_8 PF13181.6 gi|435851352|ref|YP_007312938.1| - 9.4e-11 41.1 2.3 8.9e-07 28.6 0.5 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|435851352|ref|YP_007312938.1| - 7.4e-10 38.2 2.5 4.8e-05 23.2 0.3 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|435851352|ref|YP_007312938.1| - 5.4e-09 35.5 4.8 0.00019 21.1 1.1 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|435851352|ref|YP_007312938.1| - 5.4e-07 29.6 3.2 2.1e-05 24.5 1.2 2.9 3 0 0 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat TPR_17 PF13431.6 gi|435851352|ref|YP_007312938.1| - 7.6e-06 26.0 1.9 0.0017 18.6 0.0 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|435851352|ref|YP_007312938.1| - 9.6e-06 25.2 1.6 0.18 11.5 0.0 2.8 2 1 1 3 3 3 2 TPR repeat TPR_14 PF13428.6 gi|435851352|ref|YP_007312938.1| - 0.0018 18.9 0.1 1.3 10.0 0.0 3.0 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|435851352|ref|YP_007312938.1| - 0.0019 18.8 0.0 0.043 14.5 0.0 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|435851352|ref|YP_007312938.1| - 0.0042 17.3 0.1 0.049 13.9 0.1 2.2 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|435851352|ref|YP_007312938.1| - 0.0063 16.3 0.1 3.2 7.8 0.0 2.8 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_9 PF13371.6 gi|435851352|ref|YP_007312938.1| - 0.0083 16.3 0.0 1.4 9.1 0.0 2.2 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|435851352|ref|YP_007312938.1| - 0.025 15.1 0.1 11 6.6 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat Disintegrin PF00200.23 gi|435851352|ref|YP_007312938.1| - 0.06 14.2 3.7 0.097 13.5 3.7 1.3 1 0 0 1 1 1 0 Disintegrin TRAM PF01938.20 gi|435851353|ref|YP_007312939.1| - 2e-17 62.9 0.9 2.2e-17 62.8 0.9 1.0 1 0 0 1 1 1 1 TRAM domain S1 PF00575.23 gi|435851353|ref|YP_007312939.1| - 0.065 13.6 2.5 3.6 8.0 0.1 2.3 2 1 0 2 2 2 0 S1 RNA binding domain DEAD PF00270.29 gi|435851354|ref|YP_007312940.1| - 7.5e-54 182.2 0.4 1.4e-53 181.3 0.4 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|435851354|ref|YP_007312940.1| - 2e-33 115.0 1.3 2.9e-30 104.9 0.1 2.7 3 0 0 3 3 3 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|435851354|ref|YP_007312940.1| - 3.5e-08 33.6 0.0 6.3e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|435851354|ref|YP_007312940.1| - 7.6e-06 25.8 0.0 1.4e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain CMS1 PF14617.6 gi|435851354|ref|YP_007312940.1| - 8.9e-06 25.2 0.3 3e-05 23.5 0.2 1.8 2 0 0 2 2 2 1 U3-containing 90S pre-ribosomal complex subunit Helicase_RecD PF05127.14 gi|435851354|ref|YP_007312940.1| - 0.00039 20.3 0.0 0.00067 19.5 0.0 1.4 1 1 0 1 1 1 1 Helicase UTP25 PF06862.12 gi|435851354|ref|YP_007312940.1| - 0.00074 18.4 0.1 0.0076 15.1 0.0 2.4 3 0 0 3 3 3 1 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 AAA_19 PF13245.6 gi|435851354|ref|YP_007312940.1| - 0.0039 17.5 0.1 0.012 16.0 0.1 1.8 2 0 0 2 2 2 1 AAA domain Flavi_DEAD PF07652.14 gi|435851354|ref|YP_007312940.1| - 0.11 12.4 0.2 0.32 10.9 0.2 1.9 1 1 0 1 1 1 0 Flavivirus DEAD domain Nsp3_PL2pro PF12124.8 gi|435851354|ref|YP_007312940.1| - 0.12 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Coronavirus polyprotein cleavage domain Radical_SAM PF04055.21 gi|435851356|ref|YP_007312942.1| - 2e-20 73.9 0.1 2e-20 73.9 0.1 1.8 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|435851356|ref|YP_007312942.1| - 0.0051 17.1 0.0 0.0051 17.1 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain DZR PF12773.7 gi|435851356|ref|YP_007312942.1| - 0.069 13.2 0.1 0.069 13.2 0.1 2.9 3 0 0 3 3 3 0 Double zinc ribbon DiS_P_DiS PF06750.13 gi|435851356|ref|YP_007312942.1| - 0.49 10.6 0.0 0.49 10.6 0.0 2.8 3 0 0 3 3 3 0 Bacterial Peptidase A24 N-terminal domain zf_UBZ PF18439.1 gi|435851356|ref|YP_007312942.1| - 0.88 9.2 5.1 3.2 7.4 0.1 3.5 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 gi|435851356|ref|YP_007312942.1| - 3.3 7.7 13.6 6.4 6.8 0.3 4.2 4 0 0 4 4 4 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|435851356|ref|YP_007312942.1| - 3.3 7.5 7.1 1.2 9.0 0.1 3.0 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger LRV_FeS PF05484.11 gi|435851356|ref|YP_007312942.1| - 6.3 6.9 8.5 0.36 10.9 1.8 2.2 2 0 0 2 2 2 0 LRV protein FeS4 cluster Dabb PF07876.12 gi|435851357|ref|YP_007312943.1| - 7e-27 93.9 1.0 7.8e-27 93.8 1.0 1.0 1 0 0 1 1 1 1 Stress responsive A/B Barrel Domain Polysacc_synt_3 PF13440.6 gi|435851358|ref|YP_007312944.1| - 5.4e-26 91.5 10.8 5.4e-26 91.5 10.8 2.2 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|435851358|ref|YP_007312944.1| - 6.4e-13 48.7 15.3 6.4e-13 48.7 15.3 2.6 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Glyoxalase_6 PF18029.1 gi|435851359|ref|YP_007312945.1| - 5.1e-06 27.2 0.0 6.4e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|435851359|ref|YP_007312945.1| - 0.031 14.5 0.0 0.091 13.0 0.0 1.6 1 1 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Lon_C PF05362.13 gi|435851360|ref|YP_007312946.1| - 6.7e-15 55.2 0.2 1.3e-14 54.2 0.2 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|435851360|ref|YP_007312946.1| - 0.054 13.3 0.0 0.094 12.6 0.0 1.3 1 0 0 1 1 1 0 Subunit ChlI of Mg-chelatase TSC22 PF01166.18 gi|435851360|ref|YP_007312946.1| - 0.068 13.5 0.8 0.17 12.2 0.8 1.6 1 0 0 1 1 1 0 TSC-22/dip/bun family DUF16 PF01519.16 gi|435851360|ref|YP_007312946.1| - 0.071 13.6 0.7 0.15 12.6 0.7 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF16 ABC_tran_CTD PF16326.5 gi|435851360|ref|YP_007312946.1| - 0.19 12.0 0.7 0.44 10.8 0.7 1.6 1 0 0 1 1 1 0 ABC transporter C-terminal domain DUF4352 PF11611.8 gi|435851362|ref|YP_007312948.1| - 6.2e-20 71.7 0.0 8.9e-20 71.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) DUF5067 PF16729.5 gi|435851362|ref|YP_007312948.1| - 0.00058 19.8 0.0 0.0011 18.9 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF5067) Phytase-like PF13449.6 gi|435851362|ref|YP_007312948.1| - 0.074 13.0 0.1 0.089 12.7 0.1 1.1 1 0 0 1 1 1 0 Esterase-like activity of phytase RHH_1 PF01402.21 gi|435851363|ref|YP_007312949.1| - 0.007 16.3 0.2 0.013 15.4 0.0 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|435851363|ref|YP_007312949.1| - 0.028 14.4 0.5 0.054 13.5 0.5 1.4 1 0 0 1 1 1 0 Ribbon-helix-helix domain DUF5354 PF17305.2 gi|435851363|ref|YP_007312949.1| - 0.13 12.5 0.0 0.14 12.3 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5354) SOGA PF11365.8 gi|435851367|ref|YP_007312953.1| - 0.021 15.9 0.7 0.023 15.8 0.7 1.0 1 0 0 1 1 1 0 Protein SOGA bZIP_1 PF00170.21 gi|435851367|ref|YP_007312953.1| - 0.031 14.4 0.3 0.041 14.0 0.3 1.1 1 0 0 1 1 1 0 bZIP transcription factor SlyX PF04102.12 gi|435851367|ref|YP_007312953.1| - 0.061 13.9 2.3 0.067 13.8 2.3 1.1 1 0 0 1 1 1 0 SlyX TF_Zn_Ribbon PF08271.12 gi|435851368|ref|YP_007312954.1| - 2.4e-06 26.9 0.2 4.3e-06 26.1 0.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|435851368|ref|YP_007312954.1| - 0.00022 21.2 0.3 0.58 10.3 0.0 2.4 2 0 0 2 2 2 2 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|435851368|ref|YP_007312954.1| - 0.032 14.2 3.0 0.076 13.0 3.0 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|435851368|ref|YP_007312954.1| - 0.11 12.5 1.2 4.1 7.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|435851368|ref|YP_007312954.1| - 0.14 12.7 1.5 1.9 9.1 0.2 2.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type OrfB_Zn_ribbon PF07282.11 gi|435851368|ref|YP_007312954.1| - 0.17 11.8 1.7 1.1 9.2 0.3 2.3 2 1 0 2 2 2 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.10 gi|435851368|ref|YP_007312954.1| - 0.29 10.9 2.4 13 5.6 0.1 2.7 3 0 0 3 3 3 0 A2L zinc ribbon domain zf-RRN7 PF11781.8 gi|435851368|ref|YP_007312954.1| - 0.49 10.1 3.7 2.4 7.9 3.7 2.0 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DNA_ligase_ZBD PF03119.16 gi|435851368|ref|YP_007312954.1| - 0.67 10.0 4.0 0.61 10.2 2.1 2.0 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS1 PF03811.13 gi|435851368|ref|YP_007312954.1| - 3 7.6 5.2 27 4.6 5.2 2.1 1 1 0 1 1 1 0 InsA N-terminal domain DUF4618 PF15397.6 gi|435851372|ref|YP_007312958.1| - 0.0061 16.0 2.5 0.0079 15.7 2.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4618) RecT PF03837.14 gi|435851373|ref|YP_007312959.1| - 1.1e-38 132.7 0.0 1.8e-38 132.0 0.0 1.3 1 0 0 1 1 1 1 RecT family YqfD PF06898.11 gi|435851373|ref|YP_007312959.1| - 0.14 11.0 0.0 0.22 10.3 0.0 1.2 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD ADPrib_exo_Tox PF03496.14 gi|435851375|ref|YP_007312961.1| - 0.039 13.3 0.1 0.043 13.2 0.1 1.1 1 0 0 1 1 1 0 ADP-ribosyltransferase exoenzyme Ribosomal_S27e PF01667.17 gi|435851376|ref|YP_007312962.1| - 0.014 15.1 0.2 0.026 14.2 0.2 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 Zn_ribbon_recom PF13408.6 gi|435851376|ref|YP_007312962.1| - 0.037 14.5 0.8 0.21 12.1 0.1 2.2 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain ARA70 PF12489.8 gi|435851376|ref|YP_007312962.1| - 0.054 13.7 0.1 0.083 13.1 0.1 1.2 1 0 0 1 1 1 0 Nuclear coactivator TF_Zn_Ribbon PF08271.12 gi|435851376|ref|YP_007312962.1| - 0.057 12.9 1.2 0.12 11.9 1.2 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding Prok-RING_1 PF14446.6 gi|435851376|ref|YP_007312962.1| - 0.097 12.6 2.1 0.28 11.1 2.1 1.8 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.6 gi|435851376|ref|YP_007312962.1| - 0.16 11.4 3.2 2.6 7.6 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Gin PF10764.9 gi|435851376|ref|YP_007312962.1| - 0.2 11.6 0.2 0.2 11.6 0.2 2.5 2 1 1 3 3 3 0 Inhibitor of sigma-G Gin zinc_ribbon_10 PF10058.9 gi|435851376|ref|YP_007312962.1| - 0.33 10.7 6.4 29 4.5 4.5 3.3 2 1 1 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein PhnA_Zn_Ribbon PF08274.12 gi|435851376|ref|YP_007312962.1| - 0.35 10.9 4.1 9.4 6.3 0.4 3.0 3 0 0 3 3 3 0 PhnA Zinc-Ribbon YopX PF09643.10 gi|435851378|ref|YP_007312964.1| - 4.8e-21 75.2 7.4 1e-20 74.1 7.4 1.5 1 1 0 1 1 1 1 YopX protein zf-ribbon_3 PF13248.6 gi|435851379|ref|YP_007312965.1| - 0.00014 21.1 1.4 0.01 15.2 0.2 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|435851379|ref|YP_007312965.1| - 0.003 17.5 2.2 0.0059 16.6 2.2 1.6 1 1 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain zf_UBZ PF18439.1 gi|435851379|ref|YP_007312965.1| - 0.012 15.2 0.9 0.58 9.8 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc-ribbons_6 PF07191.12 gi|435851379|ref|YP_007312965.1| - 0.022 14.7 1.3 0.034 14.1 1.3 1.3 1 0 0 1 1 1 0 zinc-ribbons Nudix_N_2 PF14803.6 gi|435851379|ref|YP_007312965.1| - 0.032 14.2 2.7 0.11 12.4 2.9 1.7 1 1 1 2 2 2 0 Nudix N-terminal Lar_restr_allev PF14354.6 gi|435851379|ref|YP_007312965.1| - 0.033 14.6 0.6 0.038 14.4 0.6 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar GFA PF04828.14 gi|435851379|ref|YP_007312965.1| - 0.036 14.4 1.0 2.3 8.6 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-FPG_IleRS PF06827.14 gi|435851379|ref|YP_007312965.1| - 0.042 13.7 2.4 2.1 8.3 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-C3HC4_3 PF13920.6 gi|435851379|ref|YP_007312965.1| - 0.042 13.7 3.0 0.068 13.0 3.0 1.4 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf_C2H2_13 PF18508.1 gi|435851379|ref|YP_007312965.1| - 0.045 13.3 0.1 0.045 13.3 0.1 1.7 1 1 1 2 2 2 0 Zinc finger domain DZR PF12773.7 gi|435851379|ref|YP_007312965.1| - 0.056 13.5 3.2 0.14 12.2 3.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|435851379|ref|YP_007312965.1| - 0.058 13.1 2.6 0.39 10.5 2.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|435851379|ref|YP_007312965.1| - 0.6 10.3 5.0 0.74 10.0 1.0 2.1 1 1 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|435851379|ref|YP_007312965.1| - 0.92 9.1 6.1 6.9 6.3 6.1 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.12 gi|435851379|ref|YP_007312965.1| - 9.2 6.6 7.5 30 5.0 0.3 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase BMFP PF04380.13 gi|435851380|ref|YP_007312966.1| - 0.014 15.9 0.8 0.029 14.9 0.8 1.5 1 0 0 1 1 1 0 Membrane fusogenic activity Colicin_E5 PF12106.8 gi|435851381|ref|YP_007312967.1| - 0.014 15.7 0.0 0.021 15.1 0.0 1.3 1 0 0 1 1 1 0 Colicin E5 ribonuclease domain NGP1NT PF08153.12 gi|435851381|ref|YP_007312967.1| - 0.056 13.6 0.1 0.27 11.4 0.1 2.0 1 1 0 1 1 1 0 NGP1NT (NUC091) domain Zn_ribbon_SprT PF17283.2 gi|435851382|ref|YP_007312968.1| - 0.00059 19.7 0.5 0.0014 18.5 0.5 1.6 1 1 0 1 1 1 1 SprT-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|435851382|ref|YP_007312968.1| - 0.00079 18.9 2.6 0.0015 18.0 2.6 1.5 1 1 0 1 1 1 1 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|435851382|ref|YP_007312968.1| - 0.0038 16.5 0.6 0.26 10.6 0.1 2.3 2 0 0 2 2 2 1 Transcription factor zinc-finger zf-ribbon_3 PF13248.6 gi|435851382|ref|YP_007312968.1| - 0.0063 15.9 2.2 1.3 8.5 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DUF1610 PF07754.11 gi|435851382|ref|YP_007312968.1| - 0.0082 16.1 0.8 0.25 11.3 0.0 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF1610) zf_C2H2_10 PF18414.1 gi|435851382|ref|YP_007312968.1| - 0.011 15.2 2.8 0.056 13.0 0.8 2.4 2 0 0 2 2 2 0 C2H2 type zinc-finger zinc-ribbons_6 PF07191.12 gi|435851382|ref|YP_007312968.1| - 0.012 15.6 0.4 0.018 15.0 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-C4_Topoisom PF01396.19 gi|435851382|ref|YP_007312968.1| - 0.016 15.0 1.7 0.27 11.1 0.3 2.2 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Cys_rich_CPXG PF14255.6 gi|435851382|ref|YP_007312968.1| - 0.027 14.3 0.5 7.7 6.5 0.0 2.3 2 0 0 2 2 2 0 Cysteine-rich CPXCG DZR PF12773.7 gi|435851382|ref|YP_007312968.1| - 0.057 13.5 1.9 0.13 12.3 2.0 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.6 gi|435851382|ref|YP_007312968.1| - 0.067 13.1 0.8 2.9 7.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Anti-TRAP PF15777.5 gi|435851382|ref|YP_007312968.1| - 0.085 12.8 0.1 0.16 12.0 0.1 1.5 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-Di19 PF05605.12 gi|435851382|ref|YP_007312968.1| - 0.088 13.1 1.0 11 6.4 0.1 2.3 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|435851382|ref|YP_007312968.1| - 0.12 12.4 2.9 0.29 11.1 3.0 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|435851382|ref|YP_007312968.1| - 0.12 12.0 1.0 2.8 7.6 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C2HC5 PF06221.13 gi|435851382|ref|YP_007312968.1| - 0.12 12.4 1.3 2.5 8.2 0.1 2.2 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type HypA PF01155.19 gi|435851382|ref|YP_007312968.1| - 0.13 12.3 0.6 0.14 12.1 0.6 1.5 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Cys_rich_KTR PF14205.6 gi|435851382|ref|YP_007312968.1| - 0.2 11.5 3.1 2.7 7.9 3.1 2.2 1 1 1 2 2 2 0 Cysteine-rich KTR PADR1 PF08063.12 gi|435851382|ref|YP_007312968.1| - 0.24 11.2 2.2 1.1 9.1 2.5 1.9 1 1 1 2 2 2 0 PADR1 (NUC008) domain Prok-RING_4 PF14447.6 gi|435851382|ref|YP_007312968.1| - 0.46 10.4 3.2 6 6.8 0.3 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 HTH_Tnp_1_2 PF13022.6 gi|435851384|ref|YP_007312970.1| - 0.00014 22.0 0.5 0.00029 21.0 0.4 1.5 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_23 PF13384.6 gi|435851384|ref|YP_007312970.1| - 0.00028 20.6 0.0 0.00061 19.5 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain YdaS_antitoxin PF15943.5 gi|435851384|ref|YP_007312970.1| - 0.005 16.7 0.0 0.01 15.7 0.0 1.6 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Terminase_5 PF06056.12 gi|435851384|ref|YP_007312970.1| - 0.015 15.1 0.6 0.042 13.7 0.1 2.0 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_3 PF01381.22 gi|435851384|ref|YP_007312970.1| - 0.017 15.2 0.1 0.05 13.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix GhoS PF11080.8 gi|435851384|ref|YP_007312970.1| - 0.023 14.7 0.2 0.47 10.5 0.0 2.2 2 0 0 2 2 2 0 Endoribonuclease GhoS GntR PF00392.21 gi|435851384|ref|YP_007312970.1| - 0.033 13.8 0.0 0.092 12.4 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|435851384|ref|YP_007312970.1| - 0.088 12.8 0.3 1.2 9.1 0.0 2.4 2 0 0 2 2 2 0 HTH domain RTX_C PF08339.10 gi|435851384|ref|YP_007312970.1| - 0.091 12.8 0.5 0.14 12.2 0.5 1.3 1 1 0 1 1 1 0 RTX C-terminal domain HTH_Crp_2 PF13545.6 gi|435851384|ref|YP_007312970.1| - 0.093 12.7 0.1 0.32 11.0 0.0 1.9 2 1 0 2 2 2 0 Crp-like helix-turn-helix domain Intein_splicing PF14890.6 gi|435851385|ref|YP_007312971.1| - 1.1e-16 61.0 0.0 1.8e-16 60.3 0.0 1.3 1 0 0 1 1 1 1 Intein splicing domain Terminase_6C PF17289.2 gi|435851385|ref|YP_007312971.1| - 1.3e-11 44.8 0.0 4e-11 43.2 0.0 1.8 1 0 0 1 1 1 1 Terminase RNaseH-like domain Terminase_6 PF03237.15 gi|435851385|ref|YP_007312971.1| - 3.5e-09 36.7 0.2 0.0012 18.5 0.1 2.4 2 0 0 2 2 2 2 Terminase-like family TMEM240 PF15207.6 gi|435851385|ref|YP_007312971.1| - 0.042 13.6 0.1 0.081 12.6 0.1 1.4 1 0 0 1 1 1 0 TMEM240 family MJ1316 PF04457.12 gi|435851385|ref|YP_007312971.1| - 0.14 12.9 0.7 0.29 11.9 0.7 1.5 1 0 0 1 1 1 0 MJ1316 RNA cyclic group end recognition domain EDR1 PF14381.6 gi|435851386|ref|YP_007312972.1| - 0.00095 18.9 0.4 0.00095 18.9 0.4 1.1 1 0 0 1 1 1 1 Ethylene-responsive protein kinase Le-CTR1 LsmAD PF06741.13 gi|435851386|ref|YP_007312972.1| - 0.0086 16.6 0.8 0.011 16.3 0.8 1.2 1 0 0 1 1 1 1 LsmAD domain Ribosomal_L18p PF00861.22 gi|435851386|ref|YP_007312972.1| - 0.017 15.5 0.9 0.019 15.4 0.9 1.0 1 0 0 1 1 1 0 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast dNK PF01712.19 gi|435851386|ref|YP_007312972.1| - 0.04 13.8 0.2 0.048 13.5 0.2 1.1 1 0 0 1 1 1 0 Deoxynucleoside kinase DUF1156 PF06634.12 gi|435851387|ref|YP_007312973.1| - 0.03 14.4 0.0 0.034 14.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1156) Mtd_N PF18454.1 gi|435851390|ref|YP_007312976.1| - 8.8e-18 64.0 0.1 1.1e-16 60.6 0.0 2.6 2 0 0 2 2 2 1 Major tropism determinant N-terminal domain CTV_P6 PF06706.11 gi|435851390|ref|YP_007312976.1| - 4.5 7.1 5.8 17 5.2 0.0 2.7 3 0 0 3 3 3 0 Citrus tristeza virus 6-kDa protein Phage_Mu_F PF04233.14 gi|435851392|ref|YP_007312978.1| - 1.4e-08 35.4 0.1 4e-08 34.0 0.0 1.8 2 0 0 2 2 2 1 Phage Mu protein F like protein CEP63 PF17045.5 gi|435851394|ref|YP_007312980.1| - 0.014 15.3 7.4 0.02 14.8 7.4 1.1 1 0 0 1 1 1 0 Centrosomal protein of 63 kDa GspH PF12019.8 gi|435851394|ref|YP_007312980.1| - 0.036 14.5 0.9 0.1 13.0 0.9 1.9 1 1 0 1 1 1 0 Type II transport protein GspH Med30 PF11315.8 gi|435851394|ref|YP_007312980.1| - 0.062 13.5 1.8 0.095 12.9 1.8 1.2 1 0 0 1 1 1 0 Mediator complex subunit 30 DUF4407 PF14362.6 gi|435851394|ref|YP_007312980.1| - 0.081 12.3 7.1 0.11 11.8 7.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) FIT1_2 PF17357.2 gi|435851394|ref|YP_007312980.1| - 0.13 12.4 1.1 0.28 11.3 0.1 2.1 2 0 0 2 2 2 0 Facilitor Of iron transport 1 and 2 YabA PF06156.13 gi|435851394|ref|YP_007312980.1| - 0.35 11.5 2.0 0.81 10.3 2.0 1.7 1 0 0 1 1 1 0 Initiation control protein YabA DUF4604 PF15377.6 gi|435851394|ref|YP_007312980.1| - 0.37 11.2 4.9 0.6 10.5 4.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4604) Cut12 PF11500.8 gi|435851394|ref|YP_007312980.1| - 0.74 9.8 5.8 1.3 9.0 5.8 1.3 1 0 0 1 1 1 0 Spindle pole body formation-associated protein DivIC PF04977.15 gi|435851394|ref|YP_007312980.1| - 2.2 8.1 11.2 0.61 9.9 3.7 2.5 2 0 0 2 2 2 0 Septum formation initiator Linocin_M18 PF04454.12 gi|435851396|ref|YP_007312982.1| - 5.5e-10 39.0 0.1 7.8e-10 38.5 0.1 1.2 1 0 0 1 1 1 1 Encapsulating protein for peroxidase HK97-gp10_like PF04883.12 gi|435851401|ref|YP_007312987.1| - 6.3e-09 36.7 0.1 1.3e-08 35.7 0.1 1.5 2 0 0 2 2 2 1 Bacteriophage HK97-gp10, putative tail-component DUF3168 PF11367.8 gi|435851402|ref|YP_007312988.1| - 5.8e-12 45.8 0.0 6.9e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3168) DUF3756 PF12581.8 gi|435851403|ref|YP_007312989.1| - 0.059 13.3 0.2 0.17 11.8 0.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3756) PhageMin_Tail PF10145.9 gi|435851406|ref|YP_007312992.1| - 9.8e-36 123.5 27.8 9.8e-36 123.5 27.8 5.1 3 2 1 5 5 5 1 Phage-related minor tail protein Apolipoprotein PF01442.18 gi|435851406|ref|YP_007312992.1| - 1.7e-22 80.2 0.0 9.5e-07 28.9 0.0 4.6 2 1 4 6 6 6 5 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.12 gi|435851406|ref|YP_007312992.1| - 5e-06 26.6 72.3 0.012 15.7 4.4 8.7 3 1 4 8 8 8 3 Baculovirus polyhedron envelope protein, PEP, C terminus ApoLp-III PF07464.11 gi|435851406|ref|YP_007312992.1| - 1e-05 25.7 14.2 0.014 15.5 6.3 4.9 2 2 3 5 5 5 3 Apolipophorin-III precursor (apoLp-III) Prominin PF05478.11 gi|435851406|ref|YP_007312992.1| - 1.3e-05 23.5 12.9 0.0063 14.5 12.4 3.0 1 1 1 2 2 2 2 Prominin Col_cuticle_N PF01484.17 gi|435851406|ref|YP_007312992.1| - 2.3e-05 24.3 8.7 7.4 6.7 0.0 7.5 3 3 5 8 8 8 2 Nematode cuticle collagen N-terminal domain Carbpep_Y_N PF05388.11 gi|435851406|ref|YP_007312992.1| - 9e-05 23.0 16.3 0.62 10.6 0.1 5.5 2 2 3 5 5 5 3 Carboxypeptidase Y pro-peptide Phasin PF05597.11 gi|435851406|ref|YP_007312992.1| - 0.00019 21.4 4.5 11 6.0 0.0 6.9 4 1 5 9 9 8 0 Poly(hydroxyalcanoate) granule associated protein (phasin) NRN1 PF15056.6 gi|435851406|ref|YP_007312992.1| - 0.0022 18.0 13.0 5.7 7.1 0.1 6.4 2 2 3 6 6 6 1 Neuritin protein family Gp58 PF07902.11 gi|435851406|ref|YP_007312992.1| - 0.0086 14.4 27.6 0.0046 15.3 14.6 2.7 2 1 1 3 3 3 2 gp58-like protein SF-assemblin PF06705.11 gi|435851406|ref|YP_007312992.1| - 0.011 15.1 5.0 0.1 12.0 2.9 2.9 1 1 1 2 2 2 0 SF-assemblin/beta giardin DUF1690 PF07956.11 gi|435851406|ref|YP_007312992.1| - 0.017 15.5 0.4 23 5.4 0.2 3.4 1 1 3 4 4 4 0 Protein of Unknown function (DUF1690) Atypical_Card PF18461.1 gi|435851406|ref|YP_007312992.1| - 0.2 11.9 0.5 29 5.0 0.1 3.6 1 1 1 3 3 3 0 Atypical caspase recruitment domain RasGAP PF00616.19 gi|435851406|ref|YP_007312992.1| - 0.4 10.3 8.0 2.3 7.8 0.4 3.6 1 1 1 2 2 2 0 GTPase-activator protein for Ras-like GTPase DUF2433 PF10360.9 gi|435851406|ref|YP_007312992.1| - 0.66 10.1 8.3 17 5.6 1.6 4.4 2 1 3 5 5 5 0 Protein of unknown function (DUF2433) Csa1 PF06023.12 gi|435851406|ref|YP_007312992.1| - 1.7 7.9 7.0 17 4.7 0.4 3.3 1 1 3 4 4 4 0 CRISPR-associated exonuclease Csa1 DUF2341 PF10102.9 gi|435851410|ref|YP_007312996.1| - 1.4e-19 70.5 2.3 1.4e-19 70.5 2.3 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) Beta_helix PF13229.6 gi|435851412|ref|YP_007312998.1| - 2.8e-12 46.8 20.0 2e-07 31.0 1.0 2.3 1 1 0 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|435851412|ref|YP_007312998.1| - 5.2e-05 23.2 6.5 0.07 13.0 0.1 2.9 2 2 0 2 2 2 2 Pectate lyase superfamily protein H-kinase_dim PF02895.14 gi|435851415|ref|YP_007313001.1| - 0.066 13.6 0.0 0.31 11.5 0.0 2.0 2 0 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain HTH_11 PF08279.12 gi|435851416|ref|YP_007313002.1| - 0.072 13.0 0.1 0.5 10.4 0.0 1.9 2 0 0 2 2 2 0 HTH domain HTH_41 PF14502.6 gi|435851416|ref|YP_007313002.1| - 0.12 12.1 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_integrase PF00589.22 gi|435851418|ref|YP_007313004.1| - 8.9e-09 35.4 0.3 6.1e-08 32.7 0.0 2.4 3 0 0 3 3 3 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|435851418|ref|YP_007313004.1| - 5.4e-05 23.6 0.5 0.004 17.6 0.5 3.1 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|435851418|ref|YP_007313004.1| - 0.0011 18.9 0.3 0.0057 16.6 0.0 2.3 3 0 0 3 3 3 1 Archaeal phage integrase Phage_int_SAM_1 PF02899.17 gi|435851418|ref|YP_007313004.1| - 0.021 15.1 0.8 1.1 9.6 0.1 3.4 2 1 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain GP3_package PF16677.5 gi|435851418|ref|YP_007313004.1| - 0.036 14.2 0.6 0.17 12.1 0.0 2.4 3 0 0 3 3 3 0 DNA-packaging protein gp3 Swi5 PF07061.11 gi|435851418|ref|YP_007313004.1| - 0.44 10.7 2.3 17 5.6 0.1 2.5 2 0 0 2 2 2 0 Swi5 AIRC PF00731.20 gi|435851419|ref|YP_007313005.1| - 1.7e-17 63.4 4.9 2.7e-17 62.7 4.9 1.3 1 0 0 1 1 1 1 AIR carboxylase DUF111 PF01969.17 gi|435851420|ref|YP_007313006.1| - 4.1e-127 424.4 0.4 4.6e-127 424.2 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 DUF475 PF04332.15 gi|435851421|ref|YP_007313007.1| - 7.2e-45 154.0 13.7 8.8e-45 153.7 13.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF475) TerC PF03741.16 gi|435851421|ref|YP_007313007.1| - 1.1e-17 64.3 12.2 4.3e-09 36.3 7.1 2.2 1 1 1 2 2 2 2 Integral membrane protein TerC family K_trans PF02705.16 gi|435851422|ref|YP_007313008.1| - 2e-164 548.0 42.4 2.3e-164 547.9 42.4 1.0 1 0 0 1 1 1 1 K+ potassium transporter Cation_efflux PF01545.21 gi|435851423|ref|YP_007313009.1| - 2e-42 145.2 14.5 2.3e-42 145.0 14.5 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|435851423|ref|YP_007313009.1| - 1.5e-18 66.6 0.3 2.6e-18 65.9 0.3 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Intg_mem_TP0381 PF09529.10 gi|435851423|ref|YP_007313009.1| - 0.0044 16.6 0.4 0.0044 16.6 0.4 1.6 1 1 0 1 1 1 1 Integral membrane protein (intg_mem_TP0381) Caps_synth_CapC PF14102.6 gi|435851423|ref|YP_007313009.1| - 0.023 15.1 1.8 0.023 15.1 1.8 2.0 2 0 0 2 2 2 0 Capsule biosynthesis CapC CMV_1a PF12467.8 gi|435851424|ref|YP_007313010.1| - 0.47 10.8 2.0 0.65 10.3 0.7 1.7 1 1 1 2 2 2 0 Cucumber mosaic virus 1a protein family OppC_N PF12911.7 gi|435851424|ref|YP_007313010.1| - 0.84 9.7 4.7 1.1 9.3 0.2 2.3 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C E1-E2_ATPase PF00122.20 gi|435851425|ref|YP_007313011.1| - 9.9e-50 168.6 1.8 9.9e-50 168.6 1.8 2.3 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|435851425|ref|YP_007313011.1| - 4.8e-39 134.8 1.9 8.8e-39 134.0 1.9 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|435851425|ref|YP_007313011.1| - 6.9e-05 22.7 0.6 0.0036 17.1 0.5 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|435851425|ref|YP_007313011.1| - 0.00054 20.4 0.0 0.0013 19.1 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|435851425|ref|YP_007313011.1| - 0.035 14.2 0.0 0.087 12.9 0.0 1.6 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Cytochrom_C PF00034.21 gi|435851426|ref|YP_007313012.1| - 1.7e-06 29.1 0.0 4.1e-06 27.8 0.0 1.7 1 1 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 gi|435851426|ref|YP_007313012.1| - 2.1e-06 28.0 0.0 4.4e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Fic PF02661.18 gi|435851429|ref|YP_007313015.1| - 1.2e-08 35.7 0.4 4e-08 34.0 0.2 1.7 2 0 0 2 2 2 1 Fic/DOC family RACo_C_ter PF14574.6 gi|435851431|ref|YP_007313017.1| - 1e-68 231.2 5.3 5.1e-68 229.0 5.3 2.1 1 1 0 1 1 1 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|435851431|ref|YP_007313017.1| - 9.6e-12 44.9 1.4 1.4e-11 44.4 0.1 2.0 2 1 0 2 2 2 1 RACo middle region Fer4 PF00037.27 gi|435851431|ref|YP_007313017.1| - 1.1e-06 28.1 12.0 0.0024 17.6 1.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|435851431|ref|YP_007313017.1| - 6.5e-06 26.5 3.1 0.01 16.3 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435851431|ref|YP_007313017.1| - 7.3e-06 26.1 11.1 1.4e-05 25.2 11.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435851431|ref|YP_007313017.1| - 9.3e-06 25.7 11.2 2.5e-05 24.3 11.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435851431|ref|YP_007313017.1| - 1.3e-05 25.7 10.6 3e-05 24.5 10.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435851431|ref|YP_007313017.1| - 7.1e-05 23.7 11.0 0.013 16.4 1.8 2.7 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|435851431|ref|YP_007313017.1| - 0.00013 21.8 14.5 0.004 17.2 1.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435851431|ref|YP_007313017.1| - 0.0075 16.4 12.9 0.11 12.6 2.4 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435851431|ref|YP_007313017.1| - 0.031 14.8 10.4 0.43 11.2 2.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain FGGY_N PF00370.21 gi|435851431|ref|YP_007313017.1| - 0.042 13.4 0.0 0.087 12.4 0.0 1.5 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain Fer4_2 PF12797.7 gi|435851431|ref|YP_007313017.1| - 0.061 13.5 12.6 0.044 13.9 2.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|435851431|ref|YP_007313017.1| - 0.097 13.2 11.8 0.063 13.8 2.4 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|435851431|ref|YP_007313017.1| - 0.18 12.0 12.1 0.78 10.0 3.3 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435851431|ref|YP_007313017.1| - 0.33 12.0 17.0 2.2 9.4 4.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|435851431|ref|YP_007313017.1| - 1.1 9.9 8.4 2.2 8.9 8.4 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|435851431|ref|YP_007313017.1| - 2.4 9.1 10.0 0.98 10.3 1.2 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain URO-D PF01208.17 gi|435851432|ref|YP_007313018.1| - 2.3e-77 260.5 0.0 2.6e-77 260.3 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Cpn60_TCP1 PF00118.24 gi|435851433|ref|YP_007313019.1| - 8.8e-106 354.4 8.0 1e-105 354.2 8.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DAGK_acc PF00609.19 gi|435851433|ref|YP_007313019.1| - 0.05 13.9 0.1 0.26 11.6 0.0 2.1 2 0 0 2 2 2 0 Diacylglycerol kinase accessory domain Hydantoinase_A PF01968.18 gi|435851434|ref|YP_007313020.1| - 5.9e-32 111.1 0.1 5.9e-32 111.1 0.1 2.4 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|435851434|ref|YP_007313020.1| - 4.9e-29 101.3 4.6 3.3e-25 88.8 0.5 3.3 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|435851434|ref|YP_007313020.1| - 1.5e-06 27.1 1.6 0.027 13.1 0.0 2.3 2 0 0 2 2 2 2 MutL protein StbA PF06406.11 gi|435851434|ref|YP_007313020.1| - 0.081 12.1 0.1 0.16 11.2 0.1 1.4 1 0 0 1 1 1 0 StbA protein ArsR PF09824.9 gi|435851434|ref|YP_007313020.1| - 0.11 12.1 0.1 0.27 10.8 0.1 1.6 1 0 0 1 1 1 0 ArsR transcriptional regulator BcrAD_BadFG PF01869.20 gi|435851434|ref|YP_007313020.1| - 0.25 10.8 0.9 0.55 9.7 0.0 2.0 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family URO-D PF01208.17 gi|435851435|ref|YP_007313021.1| - 6e-61 206.5 0.2 3.6e-60 203.9 0.0 2.1 2 1 0 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) B12-binding PF02310.19 gi|435851435|ref|YP_007313021.1| - 3.5e-23 81.9 0.2 9.9e-23 80.5 0.2 1.8 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|435851435|ref|YP_007313021.1| - 9.1e-18 64.5 0.4 2.6e-17 63.0 0.4 1.9 1 0 0 1 1 1 1 B12 binding domain DUF1724 PF08350.10 gi|435851436|ref|YP_007313022.1| - 3.3e-21 75.2 0.5 6.6e-21 74.2 0.5 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|435851436|ref|YP_007313022.1| - 0.00014 21.6 0.1 0.00027 20.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|435851436|ref|YP_007313022.1| - 0.00016 21.7 0.0 0.00036 20.5 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|435851436|ref|YP_007313022.1| - 0.0088 16.0 0.2 0.017 15.1 0.2 1.5 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|435851436|ref|YP_007313022.1| - 0.11 12.4 0.6 0.31 11.0 0.2 1.9 2 0 0 2 2 2 0 MarR family MarR_2 PF12802.7 gi|435851436|ref|YP_007313022.1| - 0.12 12.2 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 MarR family GAF_2 PF13185.6 gi|435851437|ref|YP_007313023.1| - 1.5e-43 148.4 0.0 3.8e-25 88.8 0.0 2.3 2 0 0 2 2 2 2 GAF domain PAS_3 PF08447.12 gi|435851437|ref|YP_007313023.1| - 3.2e-28 97.9 0.1 2.9e-20 72.4 0.4 2.8 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|435851437|ref|YP_007313023.1| - 1.9e-26 92.8 0.1 5.9e-26 91.2 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|435851437|ref|YP_007313023.1| - 1.1e-17 64.0 0.1 3e-08 33.6 0.1 3.2 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|435851437|ref|YP_007313023.1| - 9.1e-16 58.0 0.6 7.4e-10 39.0 0.0 2.8 2 0 0 2 2 2 2 PAS domain GAF PF01590.26 gi|435851437|ref|YP_007313023.1| - 3.7e-15 56.7 0.0 3.2e-10 40.8 0.0 2.3 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.6 gi|435851437|ref|YP_007313023.1| - 3.5e-08 33.8 0.0 0.00098 19.5 0.0 2.4 2 0 0 2 2 2 2 GAF domain PAS_4 PF08448.10 gi|435851437|ref|YP_007313023.1| - 1.6e-07 31.5 0.0 0.03 14.6 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|435851437|ref|YP_007313023.1| - 0.001 19.1 0.0 0.0049 16.9 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_11 PF14598.6 gi|435851437|ref|YP_007313023.1| - 0.0023 18.0 0.0 0.83 9.8 0.0 2.7 2 0 0 2 2 2 1 PAS domain SpoVT_C PF15714.5 gi|435851437|ref|YP_007313023.1| - 0.021 14.8 0.1 1.1 9.3 0.0 3.4 3 0 0 3 3 3 0 Stage V sporulation protein T C-terminal, transcription factor Hs1pro-1_N PF07231.12 gi|435851437|ref|YP_007313023.1| - 0.068 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Hs1pro-1 N-terminus PAS_12 PF18095.1 gi|435851437|ref|YP_007313023.1| - 0.07 12.8 0.0 0.54 9.9 0.0 2.3 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain DUF433 PF04255.14 gi|435851437|ref|YP_007313023.1| - 0.084 12.7 0.0 13 5.8 0.0 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF433) HATPase_c_3 PF13589.6 gi|435851437|ref|YP_007313023.1| - 0.1 12.4 0.0 0.26 11.1 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SIR2_2 PF13289.6 gi|435851438|ref|YP_007313024.1| - 6.2e-11 42.6 0.3 3e-10 40.4 0.1 2.3 2 0 0 2 2 2 1 SIR2-like domain SIR2 PF02146.17 gi|435851438|ref|YP_007313024.1| - 0.0004 20.4 0.3 0.012 15.6 0.0 3.4 2 1 0 2 2 2 1 Sir2 family Xpo1 PF08389.12 gi|435851438|ref|YP_007313024.1| - 0.08 13.0 3.5 1.8 8.6 0.0 2.8 2 1 0 2 2 2 0 Exportin 1-like protein TPR_12 PF13424.6 gi|435851438|ref|YP_007313024.1| - 0.097 13.0 0.5 12 6.3 0.1 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat NUDIX PF00293.28 gi|435851439|ref|YP_007313025.1| - 1.2e-14 54.5 0.0 1.6e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Phage_integrase PF00589.22 gi|435851440|ref|YP_007313026.1| - 4.9e-18 65.5 0.0 1.3e-17 64.1 0.0 1.8 1 1 1 2 2 2 1 Phage integrase family DUF3435 PF11917.8 gi|435851440|ref|YP_007313026.1| - 0.0054 15.7 0.0 0.011 14.7 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3435) Phage_int_SAM_1 PF02899.17 gi|435851440|ref|YP_007313026.1| - 0.014 15.7 0.0 0.03 14.6 0.0 1.6 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|435851440|ref|YP_007313026.1| - 0.067 13.7 1.7 0.21 12.1 1.1 2.1 2 1 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain TPR_1 PF00515.28 gi|435851441|ref|YP_007313027.1| - 2.4e-89 289.8 0.1 9.1e-10 37.9 0.0 11.3 11 0 0 11 11 10 10 Tetratricopeptide repeat TPR_2 PF07719.17 gi|435851441|ref|YP_007313027.1| - 7.9e-77 247.3 1.2 3.4e-07 29.9 0.1 11.2 11 0 0 11 11 10 10 Tetratricopeptide repeat TPR_11 PF13414.6 gi|435851441|ref|YP_007313027.1| - 8.4e-74 243.0 13.8 1.6e-09 37.3 0.0 11.7 1 1 10 11 11 11 10 TPR repeat TPR_8 PF13181.6 gi|435851441|ref|YP_007313027.1| - 2.5e-73 236.3 13.2 4.1e-07 29.7 0.0 11.6 12 0 0 12 12 10 10 Tetratricopeptide repeat TPR_17 PF13431.6 gi|435851441|ref|YP_007313027.1| - 4.2e-59 192.8 0.0 3.1e-05 24.0 0.0 10.6 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_16 PF13432.6 gi|435851441|ref|YP_007313027.1| - 2.4e-43 146.5 2.6 3.4e-09 37.2 0.0 7.3 3 2 3 7 7 7 7 Tetratricopeptide repeat TPR_12 PF13424.6 gi|435851441|ref|YP_007313027.1| - 1.1e-40 137.8 3.5 6.1e-08 32.9 0.0 7.1 4 2 2 6 6 6 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|435851441|ref|YP_007313027.1| - 7.6e-40 132.2 9.1 0.0029 18.3 0.1 10.2 2 2 8 10 10 10 8 Tetratricopeptide repeat Mrr_cat PF04471.12 gi|435851441|ref|YP_007313027.1| - 1.3e-29 102.5 0.1 3.1e-29 101.3 0.1 1.7 1 0 0 1 1 1 1 Restriction endonuclease TPR_19 PF14559.6 gi|435851441|ref|YP_007313027.1| - 5.4e-29 100.5 1.2 2e-05 25.0 0.0 5.8 3 2 1 5 5 5 5 Tetratricopeptide repeat TPR_6 PF13174.6 gi|435851441|ref|YP_007313027.1| - 1.1e-27 94.7 8.8 0.038 14.6 0.0 11.2 11 0 0 11 11 11 6 Tetratricopeptide repeat TPR_9 PF13371.6 gi|435851441|ref|YP_007313027.1| - 2.2e-24 85.4 0.1 9.6e-05 22.5 0.0 7.0 2 1 6 8 8 8 7 Tetratricopeptide repeat TPR_10 PF13374.6 gi|435851441|ref|YP_007313027.1| - 2.5e-23 81.2 16.5 0.1 12.5 0.1 10.3 10 0 0 10 10 10 7 Tetratricopeptide repeat TPR_7 PF13176.6 gi|435851441|ref|YP_007313027.1| - 2.8e-23 80.2 2.2 0.21 11.7 0.0 10.5 10 0 0 10 10 10 5 Tetratricopeptide repeat DUF3856 PF12968.7 gi|435851441|ref|YP_007313027.1| - 2.2e-22 79.7 9.1 0.42 10.7 0.0 10.0 1 1 7 9 9 9 7 Domain of Unknown Function (DUF3856) BTAD PF03704.17 gi|435851441|ref|YP_007313027.1| - 1.7e-19 70.7 0.0 0.0034 17.8 0.0 5.8 3 2 2 6 6 6 5 Bacterial transcriptional activator domain ANAPC3 PF12895.7 gi|435851441|ref|YP_007313027.1| - 8.6e-19 67.6 0.1 2.4e-06 27.7 0.0 5.4 2 2 4 6 6 6 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_15 PF13429.6 gi|435851441|ref|YP_007313027.1| - 3e-13 49.6 3.0 8.5e-05 21.9 1.1 3.3 1 1 2 3 3 3 3 Tetratricopeptide repeat NARP1 PF12569.8 gi|435851441|ref|YP_007313027.1| - 1.8e-09 37.1 0.8 1.1 8.1 0.1 5.2 1 1 1 4 4 4 4 NMDA receptor-regulated protein 1 PPR PF01535.20 gi|435851441|ref|YP_007313027.1| - 3.1e-08 33.3 1.6 54 4.4 0.0 8.7 9 0 0 9 9 8 0 PPR repeat MIT PF04212.18 gi|435851441|ref|YP_007313027.1| - 2.3e-07 30.8 16.5 0.73 9.9 0.2 8.8 9 0 0 9 9 8 2 MIT (microtubule interacting and transport) domain SRP_TPR_like PF17004.5 gi|435851441|ref|YP_007313027.1| - 5.5e-07 29.6 0.1 0.023 14.7 0.0 5.0 1 1 3 4 4 4 1 Putative TPR-like repeat TPR_21 PF09976.9 gi|435851441|ref|YP_007313027.1| - 3.5e-06 26.8 10.6 3 7.5 0.0 7.1 1 1 4 7 7 7 1 Tetratricopeptide repeat-like domain NRBF2_MIT PF17169.4 gi|435851441|ref|YP_007313027.1| - 6.8e-06 26.2 6.4 12 6.2 0.0 8.0 8 1 1 9 9 8 0 MIT domain of nuclear receptor-binding factor 2 Wzy_C_2 PF11846.8 gi|435851441|ref|YP_007313027.1| - 1.3e-05 25.2 1.7 4 7.3 0.0 5.8 3 2 3 6 6 6 1 Virulence factor membrane-bound polymerase, C-terminal TPR_5 PF12688.7 gi|435851441|ref|YP_007313027.1| - 1.8e-05 25.0 2.0 0.68 10.2 0.0 5.1 2 2 3 5 5 5 2 Tetratrico peptide repeat Mrr_cat_2 PF13156.6 gi|435851441|ref|YP_007313027.1| - 2.6e-05 24.1 0.4 6e-05 22.9 0.4 1.6 1 0 0 1 1 1 1 Restriction endonuclease Fis1_TPR_C PF14853.6 gi|435851441|ref|YP_007313027.1| - 6.3e-05 23.0 0.0 53 4.0 0.0 6.3 7 0 0 7 7 6 0 Fis1 C-terminal tetratricopeptide repeat Tn7_Tnp_TnsA_C PF08721.11 gi|435851441|ref|YP_007313027.1| - 0.0011 19.6 0.2 1.3 9.7 0.0 3.7 2 1 1 3 3 2 1 TnsA endonuclease C terminal Lambda_Kil PF06301.11 gi|435851441|ref|YP_007313027.1| - 0.0011 18.5 0.8 5.3 6.7 0.0 5.8 7 0 0 7 7 7 0 Bacteriophage lambda Kil protein SHNi-TPR PF10516.9 gi|435851441|ref|YP_007313027.1| - 0.0059 16.0 3.5 35 4.0 0.0 5.7 6 0 0 6 6 6 0 SHNi-TPR Alkyl_sulf_dimr PF14863.6 gi|435851441|ref|YP_007313027.1| - 0.0084 16.6 0.6 31 5.0 0.0 4.3 5 0 0 5 5 3 0 Alkyl sulfatase dimerisation HTH_Bact PF18768.1 gi|435851441|ref|YP_007313027.1| - 0.0086 15.6 17.8 8.7 6.0 0.1 8.1 9 0 0 9 9 8 0 Helix-turn-helix bacterial domain PDDEXK_5 PF11645.8 gi|435851441|ref|YP_007313027.1| - 0.063 13.2 0.5 0.18 11.8 0.2 1.8 2 0 0 2 2 1 0 PD-(D/E)XK endonuclease PriCT_2 PF08707.11 gi|435851441|ref|YP_007313027.1| - 0.19 12.1 0.7 26 5.3 0.0 4.2 2 2 2 4 4 3 0 Primase C terminal 2 (PriCT-2) PPTA PF01239.22 gi|435851441|ref|YP_007313027.1| - 0.2 11.5 19.8 9.8 6.1 0.1 7.5 8 0 0 8 8 7 0 Protein prenyltransferase alpha subunit repeat TPR_3 PF07720.12 gi|435851441|ref|YP_007313027.1| - 0.78 9.8 18.7 70 3.6 0.1 7.4 8 0 0 8 8 6 0 Tetratricopeptide repeat Nitroreductase PF00881.24 gi|435851442|ref|YP_007313028.1| - 5.6e-21 75.3 0.6 4.1e-10 40.0 0.2 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|435851442|ref|YP_007313028.1| - 2.8e-09 36.9 0.0 1.4e-05 24.8 0.1 2.1 1 1 1 2 2 2 2 Putative TM nitroreductase Met_10 PF02475.16 gi|435851443|ref|YP_007313029.1| - 1.5e-58 197.9 0.1 1.9e-58 197.5 0.1 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|435851443|ref|YP_007313029.1| - 2.3e-17 62.6 0.1 4.2e-17 61.8 0.1 1.4 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain MTS PF05175.14 gi|435851443|ref|YP_007313029.1| - 1.5e-09 37.7 0.1 2.4e-09 37.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|435851443|ref|YP_007313029.1| - 1.2e-07 31.6 0.0 2e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|435851443|ref|YP_007313029.1| - 3.3e-06 27.7 0.0 1e-05 26.1 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain TRM PF02005.16 gi|435851443|ref|YP_007313029.1| - 2e-05 23.9 0.1 2.8e-05 23.5 0.1 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.13 gi|435851443|ref|YP_007313029.1| - 6.4e-05 22.5 0.1 0.00012 21.6 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|435851443|ref|YP_007313029.1| - 7.3e-05 22.5 0.0 0.00014 21.6 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|435851443|ref|YP_007313029.1| - 0.0001 21.9 0.0 0.00017 21.2 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.17 gi|435851443|ref|YP_007313029.1| - 0.00021 20.8 0.1 0.00034 20.1 0.1 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltr_RsmB-F PF01189.17 gi|435851443|ref|YP_007313029.1| - 0.00065 19.4 0.0 0.0013 18.4 0.0 1.5 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_24 PF13578.6 gi|435851443|ref|YP_007313029.1| - 0.011 16.8 0.0 0.22 12.5 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain N6_Mtase PF02384.16 gi|435851443|ref|YP_007313029.1| - 0.013 14.8 0.1 0.075 12.3 0.0 1.9 2 0 0 2 2 2 0 N-6 DNA Methylase Methyltransf_11 PF08241.12 gi|435851443|ref|YP_007313029.1| - 0.014 16.1 0.0 0.037 14.7 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain ADH_zinc_N PF00107.26 gi|435851443|ref|YP_007313029.1| - 0.017 15.1 0.0 0.032 14.2 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_18 PF12847.7 gi|435851443|ref|YP_007313029.1| - 0.021 14.8 0.0 0.11 12.5 0.0 2.1 3 0 0 3 3 3 0 Methyltransferase domain PRMT5 PF05185.16 gi|435851443|ref|YP_007313029.1| - 0.035 13.9 0.0 0.054 13.3 0.0 1.3 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase tRNA_U5-meth_tr PF05958.11 gi|435851443|ref|YP_007313029.1| - 0.037 13.0 0.0 0.056 12.4 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase GidB PF02527.15 gi|435851443|ref|YP_007313029.1| - 0.039 13.3 0.0 0.059 12.7 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G PCMT PF01135.19 gi|435851443|ref|YP_007313029.1| - 0.1 12.3 0.0 0.2 11.4 0.0 1.5 2 0 0 2 2 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_16 PF10294.9 gi|435851443|ref|YP_007313029.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_12 PF08242.12 gi|435851443|ref|YP_007313029.1| - 0.14 12.9 0.0 0.38 11.5 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain LysE PF01810.18 gi|435851444|ref|YP_007313030.1| - 1.4e-30 106.2 14.9 1.7e-30 105.9 14.9 1.0 1 0 0 1 1 1 1 LysE type translocator TFIIB PF00382.19 gi|435851445|ref|YP_007313031.1| - 9.7e-45 150.5 1.2 2.2e-21 75.7 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|435851445|ref|YP_007313031.1| - 4.1e-18 64.6 1.4 4.1e-18 64.6 1.4 1.7 2 0 0 2 2 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|435851445|ref|YP_007313031.1| - 4.2e-05 23.0 0.5 0.019 14.4 0.1 3.1 2 0 0 2 2 2 1 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.11 gi|435851445|ref|YP_007313031.1| - 0.00051 19.9 0.3 0.0014 18.5 0.3 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ACC PF17848.1 gi|435851445|ref|YP_007313031.1| - 0.013 15.5 4.4 0.38 10.9 2.7 2.9 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DZR PF12773.7 gi|435851445|ref|YP_007313031.1| - 0.014 15.4 1.4 0.059 13.4 0.5 2.2 2 0 0 2 2 2 0 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|435851445|ref|YP_007313031.1| - 0.015 15.0 0.8 0.039 13.7 0.8 1.7 1 1 0 1 1 1 0 A2L zinc ribbon domain RPA_interact_C PF14768.6 gi|435851445|ref|YP_007313031.1| - 0.015 15.8 0.1 1.1 9.9 0.0 2.4 2 0 0 2 2 2 0 Replication protein A interacting C-terminal HTH_AsnC-type PF13404.6 gi|435851445|ref|YP_007313031.1| - 0.016 15.0 0.9 0.057 13.3 0.2 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Lar_restr_allev PF14354.6 gi|435851445|ref|YP_007313031.1| - 0.021 15.2 1.3 0.18 12.2 0.3 2.7 3 0 0 3 3 3 0 Restriction alleviation protein Lar Ribosomal_S27e PF01667.17 gi|435851445|ref|YP_007313031.1| - 0.031 14.0 0.4 0.031 14.0 0.4 1.8 2 0 0 2 2 2 0 Ribosomal protein S27 HypA PF01155.19 gi|435851445|ref|YP_007313031.1| - 0.032 14.3 1.1 0.32 11.0 0.8 2.4 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2318 PF10080.9 gi|435851445|ref|YP_007313031.1| - 0.034 14.3 0.7 0.25 11.5 0.3 2.3 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) zf-ribbon_3 PF13248.6 gi|435851445|ref|YP_007313031.1| - 0.043 13.2 3.1 0.74 9.3 3.2 2.4 1 1 0 1 1 1 0 zinc-ribbon domain Cyclin_C PF02984.19 gi|435851445|ref|YP_007313031.1| - 0.051 13.7 0.0 8.6 6.5 0.0 2.4 2 0 0 2 2 2 0 Cyclin, C-terminal domain zinc_ribbon_2 PF13240.6 gi|435851445|ref|YP_007313031.1| - 0.091 12.5 0.4 2.8 7.8 0.1 2.7 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|435851445|ref|YP_007313031.1| - 0.13 12.4 6.5 0.14 12.3 0.3 3.1 2 1 1 3 3 3 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|435851445|ref|YP_007313031.1| - 0.15 12.1 0.3 0.15 12.1 0.3 1.9 2 0 0 2 2 1 0 Transposase zinc-ribbon domain HTH_31 PF13560.6 gi|435851445|ref|YP_007313031.1| - 0.16 12.3 4.0 7.7 6.9 0.1 3.5 3 0 0 3 3 3 0 Helix-turn-helix domain Elf1 PF05129.13 gi|435851445|ref|YP_007313031.1| - 0.19 11.8 2.1 0.24 11.5 0.4 2.0 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf_UBZ PF18439.1 gi|435851445|ref|YP_007313031.1| - 0.21 11.2 0.5 13 5.5 0.1 2.5 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DNA_RNApol_7kD PF03604.13 gi|435851445|ref|YP_007313031.1| - 0.41 10.4 0.1 0.41 10.4 0.1 2.9 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Stc1 PF12898.7 gi|435851445|ref|YP_007313031.1| - 0.55 10.8 4.3 0.44 11.1 0.7 2.4 3 0 0 3 3 2 0 Stc1 domain zf-ISL3 PF14690.6 gi|435851445|ref|YP_007313031.1| - 0.68 10.6 3.3 4.7 7.9 1.4 3.1 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-Mss51 PF13824.6 gi|435851445|ref|YP_007313031.1| - 0.74 10.0 2.3 46 4.2 2.0 3.3 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Nudix_N_2 PF14803.6 gi|435851445|ref|YP_007313031.1| - 0.76 9.8 3.9 0.76 9.7 0.4 2.7 2 1 0 2 2 2 0 Nudix N-terminal zf-NADH-PPase PF09297.11 gi|435851445|ref|YP_007313031.1| - 2.5 7.8 5.5 0.32 10.7 0.4 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Gar1 PF04410.14 gi|435851446|ref|YP_007313032.1| - 1.1e-10 41.5 0.0 1.2e-10 41.4 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region DUF1059 PF06348.11 gi|435851447|ref|YP_007313033.1| - 5.6e-08 32.9 0.9 7.4e-08 32.5 0.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) NTR PF01759.21 gi|435851447|ref|YP_007313033.1| - 0.033 14.0 0.0 0.042 13.6 0.0 1.1 1 0 0 1 1 1 0 UNC-6/NTR/C345C module XPG_I PF00867.18 gi|435851449|ref|YP_007313035.1| - 1.7e-24 86.0 0.0 3.2e-24 85.1 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|435851449|ref|YP_007313035.1| - 4.2e-23 81.7 0.0 7.1e-23 81.0 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|435851449|ref|YP_007313035.1| - 0.0015 19.1 0.0 0.0038 17.8 0.0 1.7 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.7 gi|435851449|ref|YP_007313035.1| - 0.089 12.9 0.0 0.24 11.5 0.0 1.8 1 1 0 1 1 1 0 Helix-hairpin-helix motif MS_channel PF00924.18 gi|435851450|ref|YP_007313036.1| - 8.8e-34 116.9 0.1 1.6e-33 116.0 0.1 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel MMTV_SAg PF01054.17 gi|435851451|ref|YP_007313037.1| - 0.094 12.3 0.0 0.49 9.9 0.0 2.0 2 0 0 2 2 2 0 Mouse mammary tumour virus superantigen ABC2_membrane PF01061.24 gi|435851452|ref|YP_007313038.1| - 3.3e-25 88.8 27.4 3.3e-25 88.8 27.4 2.0 1 1 1 2 2 2 2 ABC-2 type transporter Wzt_C PF14524.6 gi|435851453|ref|YP_007313039.1| - 3.5e-31 108.2 0.1 8.6e-31 106.9 0.1 1.6 1 0 0 1 1 1 1 Wzt C-terminal domain ABC_tran PF00005.27 gi|435851453|ref|YP_007313039.1| - 1e-23 84.4 0.0 5.1e-23 82.1 0.0 2.2 2 1 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|435851453|ref|YP_007313039.1| - 7.6e-08 32.5 0.8 7.9e-05 22.6 0.8 2.5 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|435851453|ref|YP_007313039.1| - 5.8e-07 30.2 0.3 1.5e-06 28.9 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|435851453|ref|YP_007313039.1| - 5.8e-06 25.9 0.0 1.4e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|435851453|ref|YP_007313039.1| - 0.00043 20.1 0.1 0.00064 19.5 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|435851453|ref|YP_007313039.1| - 0.0029 17.1 0.4 0.039 13.4 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|435851453|ref|YP_007313039.1| - 0.011 16.2 0.1 0.069 13.6 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|435851453|ref|YP_007313039.1| - 0.11 12.8 0.2 0.28 11.5 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|435851453|ref|YP_007313039.1| - 0.14 11.8 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|435851453|ref|YP_007313039.1| - 0.15 12.0 0.0 0.44 10.4 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase MetW PF07021.12 gi|435851454|ref|YP_007313040.1| - 6.4e-12 45.5 0.1 1.4e-11 44.3 0.1 1.5 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_23 PF13489.6 gi|435851454|ref|YP_007313040.1| - 2.2e-08 34.1 0.4 8.7e-08 32.2 0.0 2.1 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435851454|ref|YP_007313040.1| - 2.6e-08 34.4 0.0 8.1e-08 32.8 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|435851454|ref|YP_007313040.1| - 3.6e-08 34.0 0.1 9.5e-08 32.6 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|435851454|ref|YP_007313040.1| - 5.8e-07 29.4 0.7 1.4e-06 28.2 0.1 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|435851454|ref|YP_007313040.1| - 0.00014 22.6 0.0 0.0005 20.8 0.0 2.0 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|435851454|ref|YP_007313040.1| - 0.057 13.5 0.0 0.51 10.4 0.0 2.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase BMFP PF04380.13 gi|435851454|ref|YP_007313040.1| - 0.15 12.6 5.8 4.7 7.8 0.3 3.5 2 1 1 3 3 3 0 Membrane fusogenic activity DUF445 PF04286.12 gi|435851454|ref|YP_007313040.1| - 0.34 10.7 5.0 0.64 9.8 5.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF445) Peptidase_M75 PF09375.10 gi|435851454|ref|YP_007313040.1| - 0.37 10.2 2.0 0.62 9.5 1.1 1.8 1 1 0 1 1 1 0 Imelysin LD_cluster3 PF18180.1 gi|435851454|ref|YP_007313040.1| - 0.42 10.2 3.4 3.3 7.3 0.5 2.5 1 1 1 2 2 2 0 SLOG cluster3 family Methyltransf_4 PF02390.17 gi|435851454|ref|YP_007313040.1| - 0.51 9.8 2.5 0.93 8.9 0.0 2.7 3 0 0 3 3 3 0 Putative methyltransferase Methyltransf_32 PF13679.6 gi|435851454|ref|YP_007313040.1| - 0.54 10.2 0.0 0.54 10.2 0.0 2.3 2 1 0 2 2 2 0 Methyltransferase domain NleF_casp_inhib PF16809.5 gi|435851454|ref|YP_007313040.1| - 0.59 10.0 9.4 0.062 13.2 2.6 2.8 3 0 0 3 3 3 0 NleF caspase inhibitor Glycos_transf_1 PF00534.20 gi|435851455|ref|YP_007313041.1| - 4e-21 75.3 0.0 2.5e-20 72.7 0.0 2.1 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|435851455|ref|YP_007313041.1| - 4.7e-13 49.7 0.0 7.8e-13 49.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|435851455|ref|YP_007313041.1| - 2.1e-12 47.3 0.0 7e-12 45.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|435851455|ref|YP_007313041.1| - 2.3e-05 24.5 0.0 0.17 11.8 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|435851456|ref|YP_007313042.1| - 2.4e-19 69.5 0.0 6.2e-19 68.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|435851456|ref|YP_007313042.1| - 4e-14 53.2 0.0 6.6e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|435851456|ref|YP_007313042.1| - 0.00047 20.5 0.0 0.0014 18.9 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferases group 1 Wza_C PF18412.1 gi|435851456|ref|YP_007313042.1| - 0.19 11.5 0.1 7.4 6.4 0.2 2.4 2 0 0 2 2 2 0 Outer-membrane lipoprotein Wza C-terminal domain Glycos_transf_1 PF00534.20 gi|435851457|ref|YP_007313043.1| - 1.2e-18 67.2 0.0 2.3e-18 66.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|435851457|ref|YP_007313043.1| - 1e-10 42.2 0.0 1.8e-10 41.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|435851457|ref|YP_007313043.1| - 6.5e-08 32.9 0.0 1.6e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 HIT PF01230.23 gi|435851458|ref|YP_007313044.1| - 1.7e-25 89.6 0.0 2.4e-25 89.1 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|435851458|ref|YP_007313044.1| - 2.8e-13 50.3 0.0 3.6e-13 50.0 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|435851458|ref|YP_007313044.1| - 0.0071 16.2 0.1 0.0099 15.7 0.1 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Zip PF02535.22 gi|435851459|ref|YP_007313045.1| - 6.2e-05 22.4 0.4 0.00014 21.2 0.4 1.5 1 0 0 1 1 1 1 ZIP Zinc transporter PMT_2 PF13231.6 gi|435851459|ref|YP_007313045.1| - 0.013 15.7 20.5 0.013 15.7 20.5 2.6 3 0 0 3 3 3 0 Dolichyl-phosphate-mannose-protein mannosyltransferase Connexin PF00029.19 gi|435851459|ref|YP_007313045.1| - 0.024 14.4 0.2 0.06 13.1 0.2 1.6 1 0 0 1 1 1 0 Connexin FAM76 PF16046.5 gi|435851459|ref|YP_007313045.1| - 3.8 6.8 11.1 5.8 6.2 11.1 1.1 1 0 0 1 1 1 0 FAM76 protein DUF3276 PF11680.8 gi|435851459|ref|YP_007313045.1| - 7.4 6.7 10.4 1.1 9.3 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3276) SelP_N PF04592.14 gi|435851459|ref|YP_007313045.1| - 9.3 5.6 19.0 19 4.6 19.0 1.4 1 0 0 1 1 1 0 Selenoprotein P, N terminal region LPG_synthase_TM PF03706.13 gi|435851460|ref|YP_007313046.1| - 2.5e-28 99.5 26.0 3.1e-28 99.2 26.0 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Methyltransf_23 PF13489.6 gi|435851461|ref|YP_007313047.1| - 4.9e-17 62.2 0.0 8.3e-17 61.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|435851461|ref|YP_007313047.1| - 1.2e-12 48.4 0.1 1.7e-12 47.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|435851461|ref|YP_007313047.1| - 5.6e-12 45.7 0.0 6.5e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435851461|ref|YP_007313047.1| - 9.6e-12 45.4 0.1 1.4e-11 44.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|435851461|ref|YP_007313047.1| - 6e-11 43.0 0.3 1.1e-10 42.2 0.3 1.4 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|435851461|ref|YP_007313047.1| - 3.2e-06 26.7 0.1 4.5e-06 26.2 0.1 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.11 gi|435851461|ref|YP_007313047.1| - 6.1e-06 26.0 0.0 9e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_PK PF05891.12 gi|435851461|ref|YP_007313047.1| - 2.2e-05 24.1 0.1 3e-05 23.7 0.1 1.1 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase CMAS PF02353.20 gi|435851461|ref|YP_007313047.1| - 3.7e-05 23.2 0.1 5.3e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 gi|435851461|ref|YP_007313047.1| - 9.4e-05 21.5 0.1 0.0001 21.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.14 gi|435851461|ref|YP_007313047.1| - 9.9e-05 22.0 0.1 0.00018 21.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|435851461|ref|YP_007313047.1| - 0.00037 20.5 0.1 0.00073 19.6 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|435851461|ref|YP_007313047.1| - 0.00075 19.2 0.1 0.0013 18.3 0.1 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW RrnaAD PF00398.20 gi|435851461|ref|YP_007313047.1| - 0.0046 16.1 0.1 0.008 15.3 0.1 1.4 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase DREV PF05219.12 gi|435851461|ref|YP_007313047.1| - 0.0048 16.0 0.1 0.0071 15.5 0.1 1.2 1 0 0 1 1 1 1 DREV methyltransferase PrmA PF06325.13 gi|435851461|ref|YP_007313047.1| - 0.025 14.0 0.3 0.034 13.6 0.3 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.18 gi|435851461|ref|YP_007313047.1| - 0.048 13.0 0.0 0.083 12.2 0.0 1.4 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family MethyltransfD12 PF02086.15 gi|435851461|ref|YP_007313047.1| - 0.06 13.0 0.0 0.082 12.6 0.0 1.3 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase HNH_3 PF13392.6 gi|435851461|ref|YP_007313047.1| - 0.12 12.1 0.0 0.88 9.4 0.0 2.2 2 0 0 2 2 2 0 HNH endonuclease GDP_Man_Dehyd PF16363.5 gi|435851461|ref|YP_007313047.1| - 0.13 11.6 0.1 0.18 11.2 0.1 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase PCMT PF01135.19 gi|435851461|ref|YP_007313047.1| - 0.16 11.7 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Glycos_transf_2 PF00535.26 gi|435851462|ref|YP_007313048.1| - 1.7e-28 99.5 0.1 2.6e-28 99.0 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|435851462|ref|YP_007313048.1| - 1.5e-12 47.6 0.1 3.1e-12 46.6 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|435851462|ref|YP_007313048.1| - 2.9e-08 33.9 0.0 4e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_7N PF13733.6 gi|435851462|ref|YP_007313048.1| - 0.012 15.2 0.0 0.023 14.4 0.0 1.5 1 0 0 1 1 1 0 N-terminal region of glycosyl transferase group 7 Glyco_tranf_2_4 PF13704.6 gi|435851462|ref|YP_007313048.1| - 0.021 15.3 0.1 0.11 13.0 0.0 2.4 3 1 0 3 3 3 0 Glycosyl transferase family 2 Lip_A_acyltrans PF03279.13 gi|435851462|ref|YP_007313048.1| - 0.09 11.9 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial lipid A biosynthesis acyltransferase FKBP_C PF00254.28 gi|435851463|ref|YP_007313049.1| - 1e-20 73.8 0.0 1.5e-20 73.3 0.0 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase cobW PF02492.19 gi|435851464|ref|YP_007313050.1| - 6.1e-39 133.4 0.9 1e-38 132.7 0.9 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|435851464|ref|YP_007313050.1| - 0.00036 20.6 0.0 0.0018 18.3 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|435851464|ref|YP_007313050.1| - 0.0012 17.9 0.8 0.0026 16.8 0.8 1.6 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|435851464|ref|YP_007313050.1| - 0.0038 16.9 0.2 0.0086 15.7 0.2 1.6 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|435851464|ref|YP_007313050.1| - 0.034 13.9 1.5 0.74 9.5 0.1 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MobB PF03205.14 gi|435851464|ref|YP_007313050.1| - 0.047 13.6 0.3 0.11 12.4 0.3 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF1611 PF07755.11 gi|435851464|ref|YP_007313050.1| - 0.059 12.7 2.0 0.048 12.9 0.6 1.7 2 1 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain IstB_IS21 PF01695.17 gi|435851464|ref|YP_007313050.1| - 0.085 12.6 0.4 2.4 7.9 0.2 2.4 2 1 0 2 2 2 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|435851464|ref|YP_007313050.1| - 0.088 12.1 0.1 0.17 11.2 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin Pox_A32 PF04665.12 gi|435851464|ref|YP_007313050.1| - 0.13 11.7 0.2 0.26 10.7 0.2 1.5 1 0 0 1 1 1 0 Poxvirus A32 protein TrwB_AAD_bind PF10412.9 gi|435851464|ref|YP_007313050.1| - 0.14 11.0 0.7 0.2 10.5 0.7 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain HATPase_c PF02518.26 gi|435851465|ref|YP_007313051.1| - 3e-31 108.2 0.0 6.7e-31 107.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|435851465|ref|YP_007313051.1| - 1.6e-24 86.8 0.0 5e-24 85.2 0.0 1.9 1 0 0 1 1 1 1 GAF domain MEDS PF14417.6 gi|435851465|ref|YP_007313051.1| - 2.7e-24 85.8 0.0 9.8e-24 84.0 0.0 2.0 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_4 PF08448.10 gi|435851465|ref|YP_007313051.1| - 2.2e-17 63.3 0.0 9.3e-08 32.3 0.0 2.5 2 0 0 2 2 2 2 PAS fold HisKA PF00512.25 gi|435851465|ref|YP_007313051.1| - 3.7e-17 62.1 1.3 2.7e-16 59.4 0.1 2.8 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|435851465|ref|YP_007313051.1| - 4.6e-16 58.8 0.0 1.4e-06 28.3 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|435851465|ref|YP_007313051.1| - 8.4e-16 58.1 0.0 5.2e-07 29.9 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|435851465|ref|YP_007313051.1| - 1.4e-12 47.4 0.1 2.1e-06 27.6 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.7 gi|435851465|ref|YP_007313051.1| - 2.2e-07 31.0 0.3 1.3 9.3 0.0 4.4 3 1 0 3 3 3 3 PAS fold PAS_10 PF13596.6 gi|435851465|ref|YP_007313051.1| - 6.5e-05 23.5 0.0 0.0024 18.5 0.0 2.9 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.12 gi|435851465|ref|YP_007313051.1| - 0.00031 21.0 0.0 1.3 9.3 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c_5 PF14501.6 gi|435851465|ref|YP_007313051.1| - 0.0027 17.6 0.0 0.0067 16.3 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|435851465|ref|YP_007313051.1| - 0.003 17.4 0.0 0.0086 15.9 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKAP7_NLS PF10469.9 gi|435851465|ref|YP_007313051.1| - 0.0074 16.2 0.1 0.017 15.0 0.1 1.5 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain GAF_3 PF13492.6 gi|435851465|ref|YP_007313051.1| - 0.092 13.1 0.0 0.3 11.4 0.0 1.8 1 1 0 1 1 1 0 GAF domain GSDH PF07995.11 gi|435851466|ref|YP_007313052.1| - 4e-20 72.4 0.0 4e-19 69.1 0.0 2.3 2 1 0 2 2 2 1 Glucose / Sorbosone dehydrogenase SGL PF08450.12 gi|435851466|ref|YP_007313052.1| - 0.0011 18.6 0.0 0.2 11.2 0.0 2.8 1 1 1 2 2 2 2 SMP-30/Gluconolactonase/LRE-like region NHL PF01436.21 gi|435851466|ref|YP_007313052.1| - 0.0027 17.6 0.1 4.9 7.4 0.0 3.1 3 0 0 3 3 3 2 NHL repeat ABC1 PF03109.16 gi|435851467|ref|YP_007313053.1| - 2e-28 99.0 0.0 4.1e-28 97.9 0.0 1.5 1 0 0 1 1 1 1 ABC1 family RIO1 PF01163.22 gi|435851467|ref|YP_007313053.1| - 3e-09 36.7 0.0 1.1e-08 34.9 0.0 1.8 2 0 0 2 2 2 1 RIO1 family WaaY PF06176.11 gi|435851467|ref|YP_007313053.1| - 2.3e-06 27.4 1.1 5.6e-06 26.1 0.2 2.0 2 0 0 2 2 2 1 Lipopolysaccharide core biosynthesis protein (WaaY) APH PF01636.23 gi|435851467|ref|YP_007313053.1| - 0.00051 20.0 0.1 0.0027 17.7 0.1 2.0 1 1 1 2 2 2 1 Phosphotransferase enzyme family dCMP_cyt_deam_1 PF00383.23 gi|435851468|ref|YP_007313054.1| - 7.8e-23 80.3 0.0 9.7e-23 80.0 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|435851468|ref|YP_007313054.1| - 1.4e-16 60.5 0.0 1.9e-16 60.0 0.0 1.2 1 1 0 1 1 1 1 MafB19-like deaminase SNAD4 PF18750.1 gi|435851468|ref|YP_007313054.1| - 0.01 15.9 0.0 0.051 13.7 0.0 1.9 2 0 0 2 2 2 0 Secreted Novel AID/APOBEC-like Deaminase 4 Bd3614-deam PF14439.6 gi|435851468|ref|YP_007313054.1| - 0.011 15.8 0.5 0.072 13.2 0.1 1.9 1 1 1 2 2 2 0 Bd3614-like deaminase NAD1 PF18778.1 gi|435851468|ref|YP_007313054.1| - 0.12 12.4 0.0 0.6 10.2 0.0 1.8 2 0 0 2 2 2 0 Novel AID APOBEC clade 1 AAA_lid_9 PF17871.1 gi|435851468|ref|YP_007313054.1| - 0.17 11.8 0.0 0.26 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA lid domain AAL_decarboxy PF03306.13 gi|435851469|ref|YP_007313055.1| - 3e-86 288.3 0.0 3.5e-86 288.1 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase TRAM PF01938.20 gi|435851470|ref|YP_007313056.1| - 5e-18 64.9 1.8 5.5e-18 64.7 1.8 1.0 1 0 0 1 1 1 1 TRAM domain eIF-1a PF01176.19 gi|435851471|ref|YP_007313057.1| - 1e-16 60.5 0.1 1.4e-16 60.0 0.1 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Lar_N PF09861.9 gi|435851472|ref|YP_007313058.1| - 2.7e-57 193.3 0.0 4e-57 192.7 0.0 1.3 1 0 0 1 1 1 1 Lactate racemase N-terminal domain Mur_ligase_C PF02875.21 gi|435851472|ref|YP_007313058.1| - 0.012 15.8 0.0 0.035 14.4 0.0 1.7 1 0 0 1 1 1 0 Mur ligase family, glutamate ligase domain DEAD PF00270.29 gi|435851473|ref|YP_007313059.1| - 3.7e-47 160.4 0.3 8.1e-47 159.2 0.1 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|435851473|ref|YP_007313059.1| - 3.8e-31 107.7 0.3 8e-28 97.0 0.1 2.9 3 0 0 3 3 3 2 Helicase conserved C-terminal domain DbpA PF03880.15 gi|435851473|ref|YP_007313059.1| - 2.9e-12 46.4 0.0 9.5e-12 44.7 0.0 1.9 2 0 0 2 2 2 1 DbpA RNA binding domain ResIII PF04851.15 gi|435851473|ref|YP_007313059.1| - 8.7e-09 35.6 0.0 1.9e-08 34.5 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit CMS1 PF14617.6 gi|435851473|ref|YP_007313059.1| - 2.3e-06 27.2 0.1 7.5e-06 25.5 0.1 1.9 1 0 0 1 1 1 1 U3-containing 90S pre-ribosomal complex subunit RsgA_GTPase PF03193.16 gi|435851474|ref|YP_007313060.1| - 5.7e-48 163.0 1.1 2.1e-47 161.1 0.1 2.0 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|435851474|ref|YP_007313060.1| - 1.7e-08 34.5 0.1 4e-08 33.3 0.0 1.7 2 0 0 2 2 1 1 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|435851474|ref|YP_007313060.1| - 3.3e-07 30.9 0.1 8.8e-07 29.5 0.1 1.6 1 1 0 1 1 1 1 ABC transporter FeoB_N PF02421.18 gi|435851474|ref|YP_007313060.1| - 1.9e-06 27.5 0.4 0.064 12.8 0.1 2.5 2 0 0 2 2 2 2 Ferrous iron transport protein B Septin PF00735.18 gi|435851474|ref|YP_007313060.1| - 2.3e-06 27.1 0.0 3.7e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Septin PduV-EutP PF10662.9 gi|435851474|ref|YP_007313060.1| - 1.4e-05 24.9 0.2 0.12 12.2 0.1 2.7 2 1 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.27 gi|435851474|ref|YP_007313060.1| - 0.00071 19.2 0.6 0.24 10.9 0.0 2.5 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|435851474|ref|YP_007313060.1| - 0.00091 19.6 0.0 0.0024 18.2 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|435851474|ref|YP_007313060.1| - 0.0011 18.6 0.1 0.0028 17.3 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Dynamin_N PF00350.23 gi|435851474|ref|YP_007313060.1| - 0.0014 18.7 2.4 0.056 13.5 0.4 2.8 2 1 1 3 3 3 1 Dynamin family Roc PF08477.13 gi|435851474|ref|YP_007313060.1| - 0.0041 17.3 0.1 0.025 14.8 0.1 2.2 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_22 PF13401.6 gi|435851474|ref|YP_007313060.1| - 0.0041 17.4 0.0 0.017 15.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain MMR_HSR1_Xtn PF16897.5 gi|435851474|ref|YP_007313060.1| - 0.0049 16.9 0.1 0.097 12.7 0.0 2.3 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain Guanylate_kin PF00625.21 gi|435851474|ref|YP_007313060.1| - 0.0058 16.3 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Guanylate kinase cobW PF02492.19 gi|435851474|ref|YP_007313060.1| - 0.01 15.4 0.1 1.2 8.7 0.0 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|435851474|ref|YP_007313060.1| - 0.016 15.4 0.0 0.095 12.9 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|435851474|ref|YP_007313060.1| - 0.016 14.7 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|435851474|ref|YP_007313060.1| - 0.017 14.8 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AIG1 PF04548.16 gi|435851474|ref|YP_007313060.1| - 0.022 14.1 0.0 0.045 13.1 0.0 1.5 1 0 0 1 1 1 0 AIG1 family Ras PF00071.22 gi|435851474|ref|YP_007313060.1| - 0.024 14.2 0.1 0.59 9.7 0.0 2.3 2 0 0 2 2 2 0 Ras family KAP_NTPase PF07693.14 gi|435851474|ref|YP_007313060.1| - 0.027 13.7 0.0 0.19 11.0 0.0 2.1 2 0 0 2 2 2 0 KAP family P-loop domain MeaB PF03308.16 gi|435851474|ref|YP_007313060.1| - 0.034 13.1 0.6 0.13 11.2 0.1 2.0 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA_helicase PF00910.22 gi|435851474|ref|YP_007313060.1| - 0.04 14.3 0.0 0.089 13.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DUF815 PF05673.13 gi|435851474|ref|YP_007313060.1| - 0.05 12.7 0.0 0.085 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MMR_HSR1_C PF08438.10 gi|435851474|ref|YP_007313060.1| - 0.052 14.1 0.7 0.61 10.7 0.0 2.6 2 1 1 3 3 3 0 GTPase of unknown function C-terminal Sigma54_activat PF00158.26 gi|435851474|ref|YP_007313060.1| - 0.053 13.2 0.0 0.13 12.0 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain NB-ARC PF00931.22 gi|435851474|ref|YP_007313060.1| - 0.054 12.7 0.0 0.086 12.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 gi|435851474|ref|YP_007313060.1| - 0.062 12.9 0.2 0.15 11.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|435851474|ref|YP_007313060.1| - 0.074 13.3 0.0 0.16 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain PAS_3 PF08447.12 gi|435851475|ref|YP_007313061.1| - 1.9e-12 47.3 0.0 2.3e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|435851475|ref|YP_007313061.1| - 0.0039 17.4 0.1 0.0043 17.3 0.1 1.1 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|435851475|ref|YP_007313061.1| - 0.013 15.8 0.0 0.013 15.7 0.0 1.1 1 0 0 1 1 1 0 PAS fold PAS PF00989.25 gi|435851475|ref|YP_007313061.1| - 0.071 13.1 0.0 0.079 13.0 0.0 1.1 1 0 0 1 1 1 0 PAS fold AI-2E_transport PF01594.16 gi|435851476|ref|YP_007313062.1| - 2.9e-44 151.6 44.6 3.6e-44 151.3 44.6 1.0 1 0 0 1 1 1 1 AI-2E family transporter Spore_III_AF PF09581.10 gi|435851476|ref|YP_007313062.1| - 1.3 9.0 4.6 2.5 8.1 4.6 1.5 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) PPDK_N PF01326.19 gi|435851477|ref|YP_007313063.1| - 1.7e-112 375.9 0.0 2.6e-112 375.3 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|435851477|ref|YP_007313063.1| - 3.3e-60 203.7 0.0 6.6e-60 202.7 0.0 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|435851477|ref|YP_007313063.1| - 2.5e-24 84.8 1.0 8.7e-24 83.0 0.8 2.1 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain DJ-1_PfpI PF01965.24 gi|435851478|ref|YP_007313064.1| - 1.3e-41 142.1 0.3 1.5e-41 142.0 0.3 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family Catalase_C PF18011.1 gi|435851478|ref|YP_007313064.1| - 0.0012 18.5 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 C-terminal domain found in long catalases Gly_transf_sug PF04488.15 gi|435851478|ref|YP_007313064.1| - 0.034 14.7 0.0 0.077 13.6 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase sugar-binding region containing DXD motif Exonuc_VII_L PF02601.15 gi|435851478|ref|YP_007313064.1| - 0.092 12.3 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Exonuclease VII, large subunit Lactamase_B_2 PF12706.7 gi|435851479|ref|YP_007313065.1| - 1.4e-17 63.9 1.5 2e-17 63.4 1.5 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|435851479|ref|YP_007313065.1| - 1.9e-12 47.6 3.3 3.1e-12 46.9 2.8 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|435851479|ref|YP_007313065.1| - 0.015 15.2 0.6 0.04 13.8 0.6 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain N6_Mtase PF02384.16 gi|435851480|ref|YP_007313066.1| - 4.1e-113 377.8 0.0 5.1e-113 377.4 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|435851480|ref|YP_007313066.1| - 3.3e-26 92.5 0.0 9.7e-26 91.0 0.0 1.8 1 0 0 1 1 1 1 HsdM N-terminal domain MTS PF05175.14 gi|435851480|ref|YP_007313066.1| - 4.8e-06 26.2 0.0 9.8e-06 25.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain AviRa PF11599.8 gi|435851480|ref|YP_007313066.1| - 0.018 14.5 0.0 0.029 13.8 0.0 1.3 1 0 0 1 1 1 0 RRNA methyltransferase AviRa UPF0020 PF01170.18 gi|435851480|ref|YP_007313066.1| - 0.034 13.8 1.3 0.19 11.4 1.3 2.0 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|435851480|ref|YP_007313066.1| - 0.04 13.6 0.0 0.21 11.2 0.0 2.0 1 1 0 1 1 1 0 Conserved hypothetical protein 95 ORF6N PF10543.9 gi|435851482|ref|YP_007313068.1| - 8.8e-27 93.1 3.9 2.5e-23 82.1 0.2 2.3 1 1 1 2 2 2 2 ORF6N domain PH PF00169.29 gi|435851482|ref|YP_007313068.1| - 0.036 14.6 0.2 0.079 13.5 0.0 1.7 2 0 0 2 2 2 0 PH domain DUF3835 PF12927.7 gi|435851482|ref|YP_007313068.1| - 0.04 14.8 0.2 0.29 12.0 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3835) Methylase_S PF01420.19 gi|435851483|ref|YP_007313069.1| - 5.8e-29 101.5 0.7 1e-17 64.9 0.1 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain Virulence_RhuM PF13310.6 gi|435851486|ref|YP_007313072.1| - 9.4e-116 385.4 8.8 1.2e-115 385.1 8.8 1.1 1 0 0 1 1 1 1 Virulence protein RhuM family HTH_5 PF01022.20 gi|435851486|ref|YP_007313072.1| - 0.043 13.7 0.0 0.098 12.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TRAPPC10 PF12584.8 gi|435851486|ref|YP_007313072.1| - 0.17 11.6 0.0 0.34 10.6 0.0 1.4 1 0 0 1 1 1 0 Trafficking protein particle complex subunit 10, TRAPPC10 DUF3387 PF11867.8 gi|435851487|ref|YP_007313073.1| - 1.3e-132 442.3 17.5 1.3e-132 442.3 17.5 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF3387) SWI2_SNF2 PF18766.1 gi|435851487|ref|YP_007313073.1| - 3.3e-81 272.2 0.1 7.7e-81 271.0 0.1 1.6 1 0 0 1 1 1 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|435851487|ref|YP_007313073.1| - 1.8e-48 165.1 0.1 1.8e-48 165.1 0.1 3.1 3 0 0 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.15 gi|435851487|ref|YP_007313073.1| - 3.3e-16 59.8 0.0 1.1e-15 58.0 0.0 2.0 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|435851487|ref|YP_007313073.1| - 0.0031 17.9 0.0 0.27 11.6 0.0 3.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain Chordopox_G3 PF06129.12 gi|435851487|ref|YP_007313073.1| - 0.025 15.3 0.2 1.5 9.5 0.0 3.1 2 0 0 2 2 2 0 Chordopoxvirus G3 protein Glyco_hydro_44 PF12891.7 gi|435851487|ref|YP_007313073.1| - 0.033 14.1 0.2 0.19 11.7 0.0 2.3 3 0 0 3 3 3 0 Glycoside hydrolase family 44 Thr_synth_N PF14821.6 gi|435851487|ref|YP_007313073.1| - 0.053 13.7 0.0 0.17 12.1 0.0 1.8 1 0 0 1 1 1 0 Threonine synthase N terminus DUF2285 PF10074.9 gi|435851487|ref|YP_007313073.1| - 0.095 13.3 0.7 11 6.7 0.1 3.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2285) Nitro_FeMo-Co PF02579.17 gi|435851488|ref|YP_007313074.1| - 3.7e-19 68.9 0.0 7.5e-19 67.9 0.0 1.5 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF499 PF04465.12 gi|435851489|ref|YP_007313075.1| - 0.02 12.6 0.1 0.026 12.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF499) Methyltransf_25 PF13649.6 gi|435851490|ref|YP_007313076.1| - 2e-16 60.4 0.0 3.5e-16 59.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435851490|ref|YP_007313076.1| - 7.1e-15 55.4 0.0 1.1e-14 54.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|435851490|ref|YP_007313076.1| - 8.8e-09 35.3 0.0 1.3e-08 34.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|435851490|ref|YP_007313076.1| - 4.3e-08 32.8 0.0 8.5e-08 31.8 0.0 1.5 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|435851490|ref|YP_007313076.1| - 8.9e-07 29.6 0.0 1.9e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|435851490|ref|YP_007313076.1| - 2e-06 27.4 0.0 4.1e-06 26.5 0.0 1.4 2 0 0 2 2 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|435851490|ref|YP_007313076.1| - 4.5e-06 26.7 0.1 1.5e-05 25.0 0.1 1.8 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_PK PF05891.12 gi|435851490|ref|YP_007313076.1| - 2.8e-05 23.7 0.0 4.4e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase CMAS PF02353.20 gi|435851490|ref|YP_007313076.1| - 6.7e-05 22.3 0.0 8.1e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|435851490|ref|YP_007313076.1| - 0.00014 21.4 0.0 0.00019 20.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.17 gi|435851490|ref|YP_007313076.1| - 0.00021 20.8 0.0 0.00039 19.9 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_23 PF13489.6 gi|435851490|ref|YP_007313076.1| - 0.00036 20.4 0.0 0.0006 19.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|435851490|ref|YP_007313076.1| - 0.0008 20.4 0.0 0.0014 19.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|435851490|ref|YP_007313076.1| - 0.00099 18.9 0.0 0.0016 18.2 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.14 gi|435851490|ref|YP_007313076.1| - 0.0018 17.7 0.0 0.003 17.0 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB RrnaAD PF00398.20 gi|435851490|ref|YP_007313076.1| - 0.0033 16.5 0.0 0.0048 16.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.10 gi|435851490|ref|YP_007313076.1| - 0.0042 16.7 0.1 0.0064 16.1 0.1 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_16 PF10294.9 gi|435851490|ref|YP_007313076.1| - 0.0076 16.0 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase Methyltr_RsmB-F PF01189.17 gi|435851490|ref|YP_007313076.1| - 0.0088 15.7 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F UPF0020 PF01170.18 gi|435851490|ref|YP_007313076.1| - 0.058 13.1 0.0 0.091 12.4 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 GidB PF02527.15 gi|435851490|ref|YP_007313076.1| - 0.097 12.0 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G FmrO PF07091.11 gi|435851490|ref|YP_007313076.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Met_10 PF02475.16 gi|435851490|ref|YP_007313076.1| - 0.14 11.9 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein DUF938 PF06080.12 gi|435851490|ref|YP_007313076.1| - 0.14 11.9 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Putative_PNPOx PF01243.20 gi|435851491|ref|YP_007313077.1| - 9.9e-08 32.1 0.0 1.2e-07 31.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF2798 PF11391.8 gi|435851492|ref|YP_007313078.1| - 4.9e-14 52.1 22.3 4e-07 30.0 5.7 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2798) Multi_Drug_Res PF00893.19 gi|435851493|ref|YP_007313079.1| - 4.2e-30 104.3 7.2 5e-30 104.0 7.2 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 gi|435851493|ref|YP_007313079.1| - 0.0076 16.4 14.2 0.062 13.5 13.9 1.9 1 1 0 1 1 1 1 EamA-like transporter family Caudo_TAP PF02413.17 gi|435851494|ref|YP_007313080.1| - 0.02 15.0 0.1 0.03 14.5 0.1 1.4 1 0 0 1 1 1 0 Caudovirales tail fibre assembly protein, lambda gpK HTH_24 PF13412.6 gi|435851494|ref|YP_007313080.1| - 0.046 13.3 0.1 0.11 12.1 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|435851494|ref|YP_007313080.1| - 0.046 13.7 0.1 0.12 12.4 0.1 1.7 1 0 0 1 1 1 0 HTH domain SIMPL PF04402.14 gi|435851495|ref|YP_007313081.1| - 3.2e-47 161.6 13.3 3.7e-47 161.4 13.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) CcmE PF03100.15 gi|435851495|ref|YP_007313081.1| - 0.051 13.6 0.9 0.093 12.7 0.5 1.7 2 0 0 2 2 2 0 CcmE Peptidase_M18 PF02127.15 gi|435851497|ref|YP_007313083.1| - 3.6e-122 408.3 0.0 4.1e-122 408.1 0.0 1.0 1 0 0 1 1 1 1 Aminopeptidase I zinc metalloprotease (M18) RepB-RCR_reg PF10723.9 gi|435851497|ref|YP_007313083.1| - 0.28 11.1 1.3 52 3.9 0.1 3.7 3 1 1 4 4 4 0 Replication regulatory protein RepB DUF1724 PF08350.10 gi|435851498|ref|YP_007313084.1| - 8.2e-23 80.3 0.8 8.2e-23 80.3 0.8 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_20 PF12840.7 gi|435851498|ref|YP_007313084.1| - 0.027 14.5 0.4 0.078 13.1 0.7 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain VCBS PF13517.6 gi|435851499|ref|YP_007313085.1| - 0.00011 22.7 42.4 0.011 16.3 9.1 5.5 1 1 5 6 6 6 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella RsgA_N PF16745.5 gi|435851499|ref|YP_007313085.1| - 0.049 13.4 4.0 1.1e+02 2.7 0.0 5.0 6 0 0 6 6 6 0 RsgA N-terminal domain AMP-binding PF00501.28 gi|435851500|ref|YP_007313086.1| - 1.4e-79 267.7 0.0 1.7e-79 267.5 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|435851500|ref|YP_007313086.1| - 1.5e-22 80.3 0.0 6.9e-22 78.2 0.1 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain HTH_17 PF12728.7 gi|435851500|ref|YP_007313086.1| - 4.9e-08 33.0 0.0 2e-07 31.1 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MerR_1 PF13411.6 gi|435851500|ref|YP_007313086.1| - 0.08 13.0 0.1 0.23 11.6 0.1 1.8 1 0 0 1 1 1 0 MerR HTH family regulatory protein RexA PF15969.5 gi|435851500|ref|YP_007313086.1| - 0.14 11.6 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 Intracellular sensor of Lambda phage, Abi component Acetyltransf_9 PF13527.7 gi|435851501|ref|YP_007313087.1| - 7.4e-11 42.2 0.0 1.1e-10 41.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|435851501|ref|YP_007313087.1| - 1.5e-10 41.3 0.0 2.2e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|435851501|ref|YP_007313087.1| - 2e-10 41.0 0.0 2.9e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|435851501|ref|YP_007313087.1| - 6.4e-06 26.1 0.0 1.3e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|435851501|ref|YP_007313087.1| - 0.0066 16.5 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase MOZ_SAS PF01853.18 gi|435851501|ref|YP_007313087.1| - 0.027 14.1 0.0 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 MOZ/SAS family Defensin_big PF14862.6 gi|435851502|ref|YP_007313088.1| - 0.22 11.9 0.0 0.28 11.5 0.0 1.2 1 0 0 1 1 1 0 Big defensin DUF4405 PF14358.6 gi|435851503|ref|YP_007313089.1| - 2.2e-16 60.2 4.0 2.6e-16 59.9 4.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) Ni_hydr_CYTB PF01292.20 gi|435851503|ref|YP_007313089.1| - 1.8e-05 24.4 0.6 2e-05 24.3 0.6 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 DUF2516 PF10724.9 gi|435851503|ref|YP_007313089.1| - 0.016 15.4 0.8 0.023 14.9 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2516) TssN PF17555.2 gi|435851503|ref|YP_007313089.1| - 0.023 14.1 0.9 0.027 13.8 0.9 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssN EbsA PF17255.2 gi|435851503|ref|YP_007313089.1| - 0.15 12.4 3.5 3.9 7.8 0.1 2.1 2 0 0 2 2 2 0 EbsA-like protein Ferric_reduct PF01794.19 gi|435851503|ref|YP_007313089.1| - 1.4 9.0 7.5 2.7 8.1 7.0 1.6 1 1 1 2 2 2 0 Ferric reductase like transmembrane component Erythro_esteras PF05139.14 gi|435851504|ref|YP_007313090.1| - 2e-58 198.9 0.0 2.5e-58 198.6 0.0 1.1 1 0 0 1 1 1 1 Erythromycin esterase Cofac_haem_bdg PF04187.13 gi|435851504|ref|YP_007313090.1| - 0.061 13.3 0.3 0.28 11.2 0.3 1.8 2 0 0 2 2 2 0 Haem-binding uptake, Tiki superfamily, ChaN 3-dmu-9_3-mt PF06983.13 gi|435851505|ref|YP_007313091.1| - 6.8e-07 29.8 0.0 7.9e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 3-demethylubiquinone-9 3-methyltransferase Glyoxalase PF00903.25 gi|435851505|ref|YP_007313091.1| - 0.0043 17.2 0.0 0.0047 17.1 0.0 1.2 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Ala_racemase_N PF01168.20 gi|435851506|ref|YP_007313092.1| - 1.4e-25 90.2 0.0 1.7e-25 90.0 0.0 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Orn_Arg_deC_N PF02784.16 gi|435851506|ref|YP_007313092.1| - 0.026 13.9 0.1 0.038 13.3 0.1 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Mito_fiss_Elm1 PF06258.11 gi|435851506|ref|YP_007313092.1| - 0.097 11.8 0.0 0.12 11.4 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial fission ELM1 Peptidase_U32 PF01136.19 gi|435851507|ref|YP_007313093.1| - 8.3e-91 303.3 0.1 4.2e-75 251.9 0.0 2.7 2 1 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.8 gi|435851507|ref|YP_007313093.1| - 1.2e-23 83.8 0.0 3.1e-23 82.5 0.0 1.7 1 0 0 1 1 1 1 Collagenase TF_Zn_Ribbon PF08271.12 gi|435851508|ref|YP_007313094.1| - 0.00022 20.7 0.5 0.00031 20.2 0.5 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|435851508|ref|YP_007313094.1| - 0.0015 17.9 1.9 0.0031 16.9 1.9 1.5 1 1 0 1 1 1 1 zinc-ribbon domain PADR1 PF08063.12 gi|435851508|ref|YP_007313094.1| - 0.0028 17.4 2.4 0.0038 17.0 2.2 1.6 1 1 0 1 1 1 1 PADR1 (NUC008) domain DZR PF12773.7 gi|435851508|ref|YP_007313094.1| - 0.0062 16.5 0.7 0.0076 16.3 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon Cys_rich_CPCC PF14206.6 gi|435851508|ref|YP_007313094.1| - 0.011 15.6 0.5 0.011 15.6 0.5 1.1 1 0 0 1 1 1 0 Cysteine-rich CPCC TackOD1 PF18551.1 gi|435851508|ref|YP_007313094.1| - 0.018 14.7 0.1 0.018 14.7 0.1 1.0 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 FYVE PF01363.21 gi|435851508|ref|YP_007313094.1| - 0.02 15.0 0.7 0.025 14.7 0.7 1.1 1 0 0 1 1 1 0 FYVE zinc finger FYDLN_acid PF09538.10 gi|435851508|ref|YP_007313094.1| - 0.024 15.3 0.1 0.024 15.3 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-H2C2_2 PF13465.6 gi|435851508|ref|YP_007313094.1| - 0.026 14.9 2.2 4.7 7.8 0.3 2.1 2 0 0 2 2 2 0 Zinc-finger double domain RecR PF02132.15 gi|435851508|ref|YP_007313094.1| - 0.027 14.0 1.7 0.66 9.6 0.0 2.1 1 1 1 2 2 2 0 RecR protein UPF0547 PF10571.9 gi|435851508|ref|YP_007313094.1| - 0.071 13.2 7.8 0.95 9.6 7.8 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-HIT PF04438.16 gi|435851508|ref|YP_007313094.1| - 0.078 12.9 2.9 1.5 8.8 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger COPI_C PF06957.11 gi|435851508|ref|YP_007313094.1| - 0.15 10.8 0.2 0.15 10.8 0.2 1.0 1 0 0 1 1 1 0 Coatomer (COPI) alpha subunit C-terminus zf_UBZ PF18439.1 gi|435851508|ref|YP_007313094.1| - 0.33 10.6 0.2 0.33 10.6 0.2 1.9 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Rubredoxin_2 PF18073.1 gi|435851508|ref|YP_007313094.1| - 0.47 10.2 6.5 6.3 6.6 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-Dof PF02701.15 gi|435851508|ref|YP_007313094.1| - 3 8.0 7.2 38 4.5 7.2 2.0 1 1 0 1 1 1 0 Dof domain, zinc finger Response_reg PF00072.24 gi|435851509|ref|YP_007313095.1| - 4.3e-28 97.7 0.2 4.8e-28 97.6 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DUF1638 PF07796.11 gi|435851510|ref|YP_007313096.1| - 1.3e-42 145.6 0.1 1.7e-42 145.2 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) TrmB PF01978.19 gi|435851511|ref|YP_007313097.1| - 1.9e-20 72.5 0.0 4.1e-20 71.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB SPX PF03105.19 gi|435851511|ref|YP_007313097.1| - 0.054 13.4 0.4 0.077 12.9 0.4 1.2 1 0 0 1 1 1 0 SPX domain DUF2250 PF10007.9 gi|435851511|ref|YP_007313097.1| - 0.076 13.1 0.0 0.21 11.7 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) PadR PF03551.14 gi|435851511|ref|YP_007313097.1| - 0.1 12.6 0.0 0.27 11.2 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family FlpD PF02662.16 gi|435851511|ref|YP_007313097.1| - 0.1 12.6 0.3 0.2 11.7 0.3 1.5 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit CARDB PF07705.11 gi|435851512|ref|YP_007313098.1| - 2.4e-10 40.6 1.5 0.026 14.8 0.0 3.5 3 1 0 3 3 3 3 CARDB NPCBM_assoc PF10633.9 gi|435851512|ref|YP_007313098.1| - 4.5e-06 26.8 0.0 0.0044 17.2 0.0 3.4 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|435851512|ref|YP_007313098.1| - 0.0037 17.5 0.3 23 5.4 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function DUF11 Alpha_adaptinC2 PF02883.20 gi|435851512|ref|YP_007313098.1| - 0.042 14.2 0.1 0.29 11.4 0.0 2.4 3 0 0 3 3 3 0 Adaptin C-terminal domain Peptidase_M73 PF12389.8 gi|435851512|ref|YP_007313098.1| - 0.084 12.7 0.4 2 8.2 0.1 2.5 2 0 0 2 2 2 0 Camelysin metallo-endopeptidase Acylphosphatase PF00708.18 gi|435851512|ref|YP_007313098.1| - 0.13 12.7 0.0 0.39 11.1 0.0 1.8 1 0 0 1 1 1 0 Acylphosphatase DUF1146 PF06612.11 gi|435851512|ref|YP_007313098.1| - 0.62 10.1 2.8 2.7 8.1 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1146) CBM_3 PF00942.18 gi|435851512|ref|YP_007313098.1| - 0.68 10.4 6.5 1.3 9.5 0.2 3.6 3 2 0 3 3 3 0 Cellulose binding domain FtsX PF02687.21 gi|435851513|ref|YP_007313099.1| - 9.2e-08 32.5 4.9 9.2e-08 32.5 4.9 3.0 3 0 0 3 3 3 1 FtsX-like permease family ABC_tran PF00005.27 gi|435851514|ref|YP_007313100.1| - 8.4e-36 123.5 0.0 1.1e-35 123.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|435851514|ref|YP_007313100.1| - 2.3e-08 33.8 0.6 1.1e-07 31.5 0.6 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|435851514|ref|YP_007313100.1| - 0.0001 21.9 0.1 0.00019 21.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|435851514|ref|YP_007313100.1| - 0.00014 21.5 0.0 0.013 15.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|435851514|ref|YP_007313100.1| - 0.00015 22.2 0.0 0.00024 21.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|435851514|ref|YP_007313100.1| - 0.00019 21.4 0.0 0.13 12.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|435851514|ref|YP_007313100.1| - 0.00024 20.9 0.5 0.011 15.4 0.2 2.1 1 1 1 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|435851514|ref|YP_007313100.1| - 0.00036 20.5 0.3 0.00065 19.6 0.1 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|435851514|ref|YP_007313100.1| - 0.00049 20.4 0.2 0.0022 18.3 0.2 1.8 1 1 0 1 1 1 1 AAA domain G-alpha PF00503.20 gi|435851514|ref|YP_007313100.1| - 0.005 16.0 0.0 0.0061 15.8 0.0 1.2 1 0 0 1 1 1 1 G-protein alpha subunit AAA_18 PF13238.6 gi|435851514|ref|YP_007313100.1| - 0.0067 17.0 0.1 0.2 12.2 0.0 2.3 2 1 0 2 2 2 1 AAA domain DUF87 PF01935.17 gi|435851514|ref|YP_007313100.1| - 0.008 16.3 0.7 0.64 10.1 0.0 2.1 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_24 PF13479.6 gi|435851514|ref|YP_007313100.1| - 0.013 15.2 1.5 0.18 11.5 0.1 2.5 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 gi|435851514|ref|YP_007313100.1| - 0.025 14.5 0.1 0.052 13.5 0.1 1.5 1 0 0 1 1 1 0 NACHT domain ATPase PF06745.13 gi|435851514|ref|YP_007313100.1| - 0.027 13.8 0.3 1.1 8.6 0.2 2.3 2 1 0 2 2 2 0 KaiC AAA_33 PF13671.6 gi|435851514|ref|YP_007313100.1| - 0.034 14.3 0.1 0.06 13.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|435851514|ref|YP_007313100.1| - 0.036 14.1 0.9 0.1 12.7 0.2 2.1 2 1 0 2 2 2 0 50S ribosome-binding GTPase SbcCD_C PF13558.6 gi|435851514|ref|YP_007313100.1| - 0.038 14.2 0.2 0.55 10.5 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.22 gi|435851514|ref|YP_007313100.1| - 0.042 13.0 0.1 0.12 11.5 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_23 PF13476.6 gi|435851514|ref|YP_007313100.1| - 0.061 13.8 1.1 0.13 12.7 1.0 1.8 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|435851514|ref|YP_007313100.1| - 0.14 11.5 0.0 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family NTP_transf_9 PF04248.12 gi|435851515|ref|YP_007313101.1| - 3.2e-17 62.2 0.1 3.7e-17 62.0 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF427) DDE_Tnp_1 PF01609.21 gi|435851516|ref|YP_007313102.1| - 2.6e-06 27.3 0.4 9.8e-06 25.4 0.3 1.9 2 0 0 2 2 2 1 Transposase DDE domain HTH_32 PF13565.6 gi|435851517|ref|YP_007313103.1| - 3.2e-09 37.3 0.0 6.4e-09 36.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|435851517|ref|YP_007313103.1| - 6.7e-09 35.7 0.0 1.1e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|435851517|ref|YP_007313103.1| - 5.3e-07 29.3 0.3 3.4e-06 26.7 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 gi|435851517|ref|YP_007313103.1| - 8e-05 22.7 0.1 0.00018 21.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain LZ_Tnp_IS481 PF13011.6 gi|435851517|ref|YP_007313103.1| - 0.0018 18.7 0.0 0.0043 17.6 0.0 1.6 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 DUF5623 PF18536.1 gi|435851517|ref|YP_007313103.1| - 0.011 16.1 1.7 0.36 11.1 0.1 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF5623) PvlArgDC PF01862.16 gi|435851520|ref|YP_007313106.1| - 3.2e-61 205.8 0.2 3.7e-61 205.7 0.2 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DUF898 PF05987.13 gi|435851520|ref|YP_007313106.1| - 0.046 12.8 0.0 0.063 12.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) FrhB_FdhB_C PF04432.13 gi|435851521|ref|YP_007313107.1| - 1.3e-34 119.2 0.0 1.3e-34 119.2 0.0 1.9 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|435851521|ref|YP_007313107.1| - 4.6e-25 87.6 0.1 2e-24 85.6 0.1 2.1 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_10 PF13237.6 gi|435851521|ref|YP_007313107.1| - 0.00017 21.6 11.6 0.00017 21.6 11.6 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|435851521|ref|YP_007313107.1| - 0.00056 19.6 20.1 0.0062 16.3 3.2 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|435851521|ref|YP_007313107.1| - 0.00063 19.7 11.6 0.14 12.3 2.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|435851521|ref|YP_007313107.1| - 0.0012 19.4 11.2 0.022 15.3 0.9 3.4 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435851521|ref|YP_007313107.1| - 0.0024 18.0 15.8 0.13 12.4 14.6 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|435851521|ref|YP_007313107.1| - 0.011 16.2 14.9 0.09 13.2 2.6 3.1 2 1 3 5 5 5 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435851521|ref|YP_007313107.1| - 0.014 16.3 11.3 1.3 10.0 2.3 3.4 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|435851521|ref|YP_007313107.1| - 0.021 15.3 3.7 0.021 15.3 3.7 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435851521|ref|YP_007313107.1| - 0.056 14.0 16.8 1.3 9.6 2.4 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435851521|ref|YP_007313107.1| - 0.11 12.6 20.2 0.17 12.0 3.9 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|435851521|ref|YP_007313107.1| - 0.14 12.3 10.2 0.071 13.3 1.2 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|435851521|ref|YP_007313107.1| - 0.38 11.5 6.7 5.2 7.9 0.6 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|435851521|ref|YP_007313107.1| - 0.39 10.9 15.0 0.09 12.9 11.1 2.0 2 0 0 2 2 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435851521|ref|YP_007313107.1| - 7.3 7.8 17.5 3.9 8.6 5.0 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain E1-E2_ATPase PF00122.20 gi|435851522|ref|YP_007313108.1| - 4.2e-44 150.2 3.5 4.2e-44 150.2 3.5 3.3 5 0 0 5 5 5 1 E1-E2 ATPase Hydrolase PF00702.26 gi|435851522|ref|YP_007313108.1| - 1.1e-14 55.2 0.5 3.8e-14 53.5 0.0 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.21 gi|435851522|ref|YP_007313108.1| - 1.5e-14 54.1 11.2 1.5e-14 54.1 11.2 2.1 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Cation_ATPase_N PF00690.26 gi|435851522|ref|YP_007313108.1| - 1.3e-13 50.4 0.1 1.3e-13 50.4 0.1 2.4 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus DUF4898 PF16239.5 gi|435851522|ref|YP_007313108.1| - 0.11 12.5 1.1 8.1 6.5 0.8 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4898) Hydrolase_3 PF08282.12 gi|435851522|ref|YP_007313108.1| - 0.13 11.9 0.4 1.5 8.5 0.1 2.6 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase Alpha-amylase PF00128.24 gi|435851523|ref|YP_007313109.1| - 1.7e-31 110.0 11.1 4.1e-31 108.8 11.1 1.5 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Glyco_hydro_70 PF02324.16 gi|435851523|ref|YP_007313109.1| - 3.5e-14 52.0 5.7 4.3e-08 31.9 0.1 3.1 2 1 1 3 3 3 3 Glycosyl hydrolase family 70 DUF1939 PF09154.10 gi|435851523|ref|YP_007313109.1| - 0.022 14.9 2.0 0.064 13.4 0.2 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF1939) adh_short_C2 PF13561.6 gi|435851524|ref|YP_007313110.1| - 9.1e-65 218.5 0.0 1e-64 218.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|435851524|ref|YP_007313110.1| - 1.9e-57 193.9 1.1 2.1e-57 193.7 1.1 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|435851524|ref|YP_007313110.1| - 1.1e-14 54.8 0.1 1.5e-14 54.3 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|435851524|ref|YP_007313110.1| - 2.2e-05 24.1 0.1 3.4e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|435851524|ref|YP_007313110.1| - 3.3e-05 23.9 0.0 4e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 NAD(P)H-binding Shikimate_DH PF01488.20 gi|435851524|ref|YP_007313110.1| - 0.023 14.7 0.5 0.077 13.1 0.2 1.9 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|435851524|ref|YP_007313110.1| - 0.029 14.6 0.4 0.058 13.7 0.4 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain THF_DHG_CYH_C PF02882.19 gi|435851524|ref|YP_007313110.1| - 0.097 12.0 0.0 0.31 10.4 0.0 1.8 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF285 PF03382.14 gi|435851524|ref|YP_007313110.1| - 0.099 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Mycoplasma protein of unknown function, DUF285 Glyco_trans_4_2 PF13477.6 gi|435851524|ref|YP_007313110.1| - 0.13 12.3 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like N6_Mtase PF02384.16 gi|435851525|ref|YP_007313111.1| - 6.2e-100 334.5 0.0 9.8e-100 333.8 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|435851525|ref|YP_007313111.1| - 2e-14 54.4 2.3 3.6e-12 47.1 0.0 4.2 3 1 0 3 3 3 1 HsdM N-terminal domain MTS PF05175.14 gi|435851525|ref|YP_007313111.1| - 0.00043 19.9 0.0 0.00084 18.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain AviRa PF11599.8 gi|435851525|ref|YP_007313111.1| - 0.013 15.0 0.0 0.029 13.8 0.0 1.5 1 0 0 1 1 1 0 RRNA methyltransferase AviRa UPF0020 PF01170.18 gi|435851525|ref|YP_007313111.1| - 0.017 14.8 0.2 0.12 12.0 0.2 2.2 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Eco57I PF07669.11 gi|435851525|ref|YP_007313111.1| - 0.026 15.0 0.0 0.15 12.6 0.0 2.4 2 0 0 2 2 2 0 Eco57I restriction-modification methylase Methyltransf_31 PF13847.6 gi|435851525|ref|YP_007313111.1| - 0.051 13.4 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Rep_trans PF02486.19 gi|435851525|ref|YP_007313111.1| - 0.11 12.3 2.0 0.19 11.4 2.0 1.5 1 0 0 1 1 1 0 Replication initiation factor Matrilin_ccoil PF10393.9 gi|435851525|ref|YP_007313111.1| - 0.45 10.4 2.2 8.3 6.4 0.2 2.7 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Methylase_S PF01420.19 gi|435851526|ref|YP_007313112.1| - 2.5e-49 167.7 0.8 5.8e-27 94.9 0.2 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain Spidroin_N PF16763.5 gi|435851526|ref|YP_007313112.1| - 0.2 11.7 1.3 0.29 11.2 0.1 1.9 3 0 0 3 3 3 0 Major ampullate spidroin 1, spider silk protein 1, N-term HATPase_c_4 PF13749.6 gi|435851527|ref|YP_007313113.1| - 1.1e-19 70.3 0.0 2.6e-19 69.1 0.0 1.6 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal AlbA_2 PF04326.14 gi|435851527|ref|YP_007313113.1| - 6e-12 46.0 0.0 1e-11 45.2 0.0 1.4 1 0 0 1 1 1 1 Putative DNA-binding domain HTH_24 PF13412.6 gi|435851527|ref|YP_007313113.1| - 2.3e-09 36.6 0.1 4.7e-09 35.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|435851527|ref|YP_007313113.1| - 0.00072 19.5 0.0 0.0018 18.2 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|435851527|ref|YP_007313113.1| - 0.0022 17.8 0.0 0.006 16.4 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_Mga PF08280.11 gi|435851527|ref|YP_007313113.1| - 0.0034 17.4 0.0 0.0061 16.6 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_11 PF08279.12 gi|435851527|ref|YP_007313113.1| - 0.0047 16.9 0.1 0.011 15.6 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|435851527|ref|YP_007313113.1| - 0.013 15.5 0.0 0.028 14.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|435851527|ref|YP_007313113.1| - 0.033 14.1 0.9 0.045 13.6 0.1 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|435851527|ref|YP_007313113.1| - 0.062 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_WhiA PF02650.14 gi|435851527|ref|YP_007313113.1| - 0.11 12.8 0.0 0.64 10.4 0.1 2.1 2 0 0 2 2 2 0 WhiA C-terminal HTH domain Crp PF00325.20 gi|435851527|ref|YP_007313113.1| - 0.18 11.5 0.0 0.37 10.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family SWI2_SNF2 PF18766.1 gi|435851528|ref|YP_007313114.1| - 2e-70 236.9 0.0 3.7e-70 236.1 0.0 1.4 1 0 0 1 1 1 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|435851528|ref|YP_007313114.1| - 6e-33 114.4 0.3 1.8e-32 112.8 0.3 1.8 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.15 gi|435851528|ref|YP_007313114.1| - 2.3e-15 57.0 0.0 1.1e-14 54.9 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF3387 PF11867.8 gi|435851528|ref|YP_007313114.1| - 2.5e-06 27.1 0.3 4.6e-06 26.2 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) DEAD PF00270.29 gi|435851528|ref|YP_007313114.1| - 0.056 13.2 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 DEAD/DEAH box helicase Zmiz1_N PF18028.1 gi|435851528|ref|YP_007313114.1| - 0.13 12.6 0.0 0.66 10.3 0.0 2.2 2 0 0 2 2 2 0 Zmiz1 N-terminal tetratricopeptide repeat domain DUF45 PF01863.17 gi|435851529|ref|YP_007313115.1| - 3.9e-59 200.2 1.4 4.4e-59 200.0 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 SprT-like PF10263.9 gi|435851529|ref|YP_007313115.1| - 3.7e-06 26.8 0.0 6.4e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 SprT-like family CsbD PF05532.12 gi|435851530|ref|YP_007313116.1| - 4.9e-17 61.6 6.6 5.3e-17 61.4 6.6 1.1 1 0 0 1 1 1 1 CsbD-like ISG65-75 PF11727.8 gi|435851530|ref|YP_007313116.1| - 0.042 13.1 1.3 0.045 13.0 1.3 1.1 1 0 0 1 1 1 0 Invariant surface glycoprotein Virul_fac_BrkB PF03631.15 gi|435851531|ref|YP_007313117.1| - 1.2e-46 159.5 22.6 1.3e-46 159.3 22.6 1.0 1 0 0 1 1 1 1 Virulence factor BrkB ANAPC2 PF08672.11 gi|435851532|ref|YP_007313118.1| - 0.038 14.5 1.4 0.59 10.7 0.0 2.5 2 1 0 2 2 2 0 Anaphase promoting complex (APC) subunit 2 DUF919 PF06034.11 gi|435851532|ref|YP_007313118.1| - 0.066 13.1 3.6 0.14 12.0 3.6 1.6 1 1 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF919) DUF2680 PF10925.8 gi|435851532|ref|YP_007313118.1| - 0.16 12.0 8.2 1.2 9.2 0.0 3.6 2 2 2 4 4 4 0 Protein of unknown function (DUF2680) LMBR1 PF04791.16 gi|435851532|ref|YP_007313118.1| - 0.2 10.5 0.3 0.23 10.3 0.3 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein PKcGMP_CC PF16808.5 gi|435851532|ref|YP_007313118.1| - 0.46 10.4 7.9 7.9 6.4 0.8 3.4 2 1 1 3 3 3 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Mrr_N PF14338.6 gi|435851533|ref|YP_007313119.1| - 0.012 15.8 0.4 0.041 14.0 0.1 2.1 2 0 0 2 2 2 0 Mrr N-terminal domain DUF4261 PF14080.6 gi|435851533|ref|YP_007313119.1| - 0.014 15.5 0.1 0.035 14.2 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4261) DUF2989 PF11207.8 gi|435851533|ref|YP_007313119.1| - 0.031 14.0 1.1 1.2 8.9 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2989) NYN PF01936.18 gi|435851534|ref|YP_007313120.1| - 4.3e-35 121.4 0.2 5.3e-35 121.1 0.2 1.0 1 0 0 1 1 1 1 NYN domain TPP_enzyme_C PF02775.21 gi|435851534|ref|YP_007313120.1| - 0.1 12.4 0.3 1.1 9.1 0.1 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NAPRTase PF04095.16 gi|435851535|ref|YP_007313121.1| - 6.7e-61 206.0 0.0 9.2e-61 205.5 0.0 1.1 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family NAPRTase_N PF17767.1 gi|435851535|ref|YP_007313121.1| - 2.2e-33 115.3 0.1 3.2e-33 114.8 0.1 1.3 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FeoA PF04023.14 gi|435851536|ref|YP_007313122.1| - 3.3e-16 59.3 0.0 3.6e-16 59.2 0.0 1.0 1 0 0 1 1 1 1 FeoA domain Thioredox_DsbH PF03190.15 gi|435851537|ref|YP_007313123.1| - 1.8e-75 252.4 0.0 4.1e-75 251.2 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|435851537|ref|YP_007313123.1| - 6.7e-10 39.0 0.0 1.8e-09 37.6 0.0 1.8 1 0 0 1 1 1 1 Thioredoxin-like Glyco_hydro_9 PF00759.19 gi|435851537|ref|YP_007313123.1| - 3e-05 23.6 0.0 5.3e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 9 Glyco_hydro_88 PF07470.13 gi|435851537|ref|YP_007313123.1| - 0.00019 20.7 0.0 0.037 13.1 0.0 2.2 2 0 0 2 2 2 2 Glycosyl Hydrolase Family 88 GlcNAc_2-epim PF07221.11 gi|435851537|ref|YP_007313123.1| - 0.00064 19.1 0.6 0.61 9.3 0.1 2.7 2 1 1 3 3 3 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_127 PF07944.12 gi|435851537|ref|YP_007313123.1| - 0.01 14.4 0.5 0.42 9.0 0.0 2.5 2 1 1 3 3 3 0 Beta-L-arabinofuranosidase, GH127 Thioredoxin_2 PF13098.6 gi|435851537|ref|YP_007313123.1| - 0.064 13.7 0.0 0.15 12.6 0.0 1.7 1 0 0 1 1 1 0 Thioredoxin-like domain HTH_8 PF02954.19 gi|435851537|ref|YP_007313123.1| - 0.079 12.8 0.0 4.8 7.0 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Lon_2 PF13337.6 gi|435851538|ref|YP_007313124.1| - 2.3e-206 685.7 0.2 2.8e-206 685.4 0.2 1.1 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease Lon_C PF05362.13 gi|435851538|ref|YP_007313124.1| - 1.2e-10 41.3 0.0 2.5e-10 40.3 0.0 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain SRP54_N PF02881.19 gi|435851538|ref|YP_007313124.1| - 0.031 14.5 0.2 0.094 12.9 0.2 1.9 1 0 0 1 1 1 0 SRP54-type protein, helical bundle domain PglZ PF08665.12 gi|435851539|ref|YP_007313125.1| - 3.8e-55 186.7 0.2 3.8e-55 186.7 0.2 2.2 3 0 0 3 3 3 1 PglZ domain Phosphodiest PF01663.22 gi|435851539|ref|YP_007313125.1| - 0.00041 20.1 0.2 0.001 18.8 0.1 1.7 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase RloB PF13707.6 gi|435851540|ref|YP_007313126.1| - 1.3e-37 129.9 0.0 1.6e-37 129.6 0.0 1.0 1 0 0 1 1 1 1 RloB-like protein AAA_21 PF13304.6 gi|435851541|ref|YP_007313127.1| - 3.5e-32 112.4 5.5 1.9e-31 110.0 5.5 2.0 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|435851541|ref|YP_007313127.1| - 4.6e-14 52.9 12.8 9.9e-14 51.8 12.8 1.6 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|435851541|ref|YP_007313127.1| - 3.7e-06 26.5 0.5 0.0029 17.1 0.0 2.8 2 1 1 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|435851541|ref|YP_007313127.1| - 0.0016 18.9 2.7 0.0016 18.9 2.7 1.9 2 1 0 2 2 2 1 AAA domain DUF3467 PF11950.8 gi|435851543|ref|YP_007313129.1| - 1.4e-06 28.3 0.2 1.7e-06 28.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) TrmB PF01978.19 gi|435851544|ref|YP_007313130.1| - 0.00026 20.8 0.1 0.00047 20.0 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|435851544|ref|YP_007313130.1| - 0.00055 19.9 0.0 0.00095 19.1 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|435851544|ref|YP_007313130.1| - 0.00067 19.2 0.1 0.0014 18.2 0.1 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding Phage_rep_O PF04492.13 gi|435851544|ref|YP_007313130.1| - 0.021 15.4 0.1 0.04 14.5 0.1 1.6 1 0 0 1 1 1 0 Bacteriophage replication protein O HTH_11 PF08279.12 gi|435851544|ref|YP_007313130.1| - 0.022 14.7 0.1 0.041 13.8 0.1 1.5 1 0 0 1 1 1 0 HTH domain Inp1 PF12634.7 gi|435851544|ref|YP_007313130.1| - 0.063 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Inheritance of peroxisomes protein 1 DUF1323 PF07037.11 gi|435851544|ref|YP_007313130.1| - 0.11 12.8 0.0 0.24 11.8 0.0 1.6 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) HTH_23 PF13384.6 gi|435851544|ref|YP_007313130.1| - 0.15 11.9 0.0 0.37 10.7 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.7 gi|435851544|ref|YP_007313130.1| - 0.16 11.9 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 MarR family HATPase_c_4 PF13749.6 gi|435851548|ref|YP_007313134.1| - 3.1e-26 91.3 0.1 1e-25 89.7 0.1 1.9 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal AlbA_2 PF04326.14 gi|435851548|ref|YP_007313134.1| - 2.6e-23 82.6 0.0 5.9e-23 81.5 0.0 1.6 2 0 0 2 2 2 1 Putative DNA-binding domain DUF4106 PF13388.6 gi|435851548|ref|YP_007313134.1| - 0.0014 17.9 6.1 0.0023 17.2 6.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4106) HATPase_c_2 PF13581.6 gi|435851548|ref|YP_007313134.1| - 0.042 13.8 0.0 0.082 12.9 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HTH_45 PF14947.6 gi|435851548|ref|YP_007313134.1| - 0.048 13.6 0.1 0.23 11.5 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix BES1_N PF05687.13 gi|435851548|ref|YP_007313134.1| - 0.53 10.7 2.6 0.97 9.8 2.6 1.3 1 0 0 1 1 1 0 BES1/BZR1 plant transcription factor, N-terminal Nucleo_P87 PF07267.11 gi|435851548|ref|YP_007313134.1| - 2.4 6.9 3.2 3.4 6.4 3.2 1.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus capsid protein P87 PT PF04886.12 gi|435851548|ref|YP_007313134.1| - 2.7 7.6 39.0 5 6.8 39.0 1.4 1 0 0 1 1 1 0 PT repeat N6_Mtase PF02384.16 gi|435851549|ref|YP_007313135.1| - 1.9e-13 50.4 0.0 6.8e-07 28.8 0.0 2.4 2 0 0 2 2 2 2 N-6 DNA Methylase Eco57I PF07669.11 gi|435851549|ref|YP_007313135.1| - 1.6e-07 31.8 0.0 4.7e-07 30.3 0.0 1.8 1 0 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.18 gi|435851549|ref|YP_007313135.1| - 0.13 11.9 0.0 17 5.1 0.0 2.4 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Hormone_3 PF00159.18 gi|435851550|ref|YP_007313136.1| - 0.0045 17.0 0.4 0.018 15.1 0.2 2.2 2 0 0 2 2 2 1 Pancreatic hormone peptide Alliinase_C PF04864.13 gi|435851550|ref|YP_007313136.1| - 0.014 14.3 0.0 0.039 12.8 0.0 1.7 1 0 0 1 1 1 0 Allinase SWI2_SNF2 PF18766.1 gi|435851550|ref|YP_007313136.1| - 0.024 14.3 0.4 13 5.4 0.0 3.7 3 0 0 3 3 3 0 SWI2/SNF2 ATPase AAA_22 PF13401.6 gi|435851550|ref|YP_007313136.1| - 0.14 12.5 0.1 10 6.4 0.0 3.2 2 1 0 2 2 2 0 AAA domain DUF5600 PF18150.1 gi|435851550|ref|YP_007313136.1| - 0.51 10.9 4.1 0.93 10.1 0.1 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF5600) DUF1788 PF08747.11 gi|435851551|ref|YP_007313137.1| - 8.2e-42 142.1 0.1 1.4e-41 141.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) 3-dmu-9_3-mt PF06983.13 gi|435851553|ref|YP_007313139.1| - 3.7e-75 249.9 0.4 6.8e-37 126.6 0.1 2.1 2 0 0 2 2 2 2 3-demethylubiquinone-9 3-methyltransferase Glyoxalase PF00903.25 gi|435851553|ref|YP_007313139.1| - 0.0048 17.1 0.0 0.033 14.4 0.0 2.3 2 1 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DASH_Ask1 PF08655.10 gi|435851553|ref|YP_007313139.1| - 0.054 13.4 0.0 0.35 10.8 0.0 2.2 2 0 0 2 2 2 0 DASH complex subunit Ask1 DUF4287 PF14117.6 gi|435851553|ref|YP_007313139.1| - 0.082 13.1 0.1 17 5.6 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4287) DSX_dimer PF08828.10 gi|435851553|ref|YP_007313139.1| - 0.35 10.6 1.4 7.9 6.2 0.1 2.4 2 0 0 2 2 2 0 Doublesex dimerisation domain TPR_1 PF00515.28 gi|435851554|ref|YP_007313140.1| - 8.6e-40 133.0 16.3 5.1e-11 41.9 1.3 4.2 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|435851554|ref|YP_007313140.1| - 1.4e-32 109.2 13.4 3.7e-08 32.9 0.5 4.3 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|435851554|ref|YP_007313140.1| - 2.6e-28 97.4 22.1 2.4e-10 39.9 1.0 4.1 1 1 3 4 4 4 3 TPR repeat TPR_8 PF13181.6 gi|435851554|ref|YP_007313140.1| - 4.7e-26 88.8 11.9 6.5e-07 29.1 0.8 4.3 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|435851554|ref|YP_007313140.1| - 9.6e-22 75.8 13.6 8.6e-07 28.9 0.9 4.2 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|435851554|ref|YP_007313140.1| - 3e-20 72.5 18.7 2.5e-08 34.3 1.7 3.0 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|435851554|ref|YP_007313140.1| - 7e-19 67.9 5.3 2e-08 34.4 2.1 3.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|435851554|ref|YP_007313140.1| - 2.9e-17 63.0 5.7 1.8e-08 34.9 1.2 2.4 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|435851554|ref|YP_007313140.1| - 7.4e-15 54.9 2.3 1.3e-05 25.2 0.1 2.5 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|435851554|ref|YP_007313140.1| - 3.6e-13 49.1 6.0 0.00069 20.2 0.5 4.1 1 1 3 4 4 4 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|435851554|ref|YP_007313140.1| - 3.3e-10 40.1 4.4 0.00017 21.7 1.1 2.2 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|435851554|ref|YP_007313140.1| - 1.4e-09 37.3 6.0 0.028 14.4 0.1 4.2 4 0 0 4 4 4 2 Tetratricopeptide repeat DUF3856 PF12968.7 gi|435851554|ref|YP_007313140.1| - 1.6e-09 38.0 0.8 0.0017 18.5 0.2 4.1 1 1 2 3 3 3 2 Domain of Unknown Function (DUF3856) NARP1 PF12569.8 gi|435851554|ref|YP_007313140.1| - 4.2e-09 35.8 0.7 6.1e-05 22.1 0.0 2.1 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 TPR_6 PF13174.6 gi|435851554|ref|YP_007313140.1| - 1.3e-08 34.9 8.3 0.056 14.1 0.3 4.2 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|435851554|ref|YP_007313140.1| - 4.8e-08 32.6 9.4 0.017 15.0 0.4 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_4 PF07721.14 gi|435851554|ref|YP_007313140.1| - 2.8e-07 30.5 0.1 0.093 13.4 0.0 4.0 4 0 0 4 4 3 1 Tetratricopeptide repeat BTAD PF03704.17 gi|435851554|ref|YP_007313140.1| - 5.4e-07 30.1 2.5 0.0082 16.6 0.4 2.3 1 1 1 2 2 2 2 Bacterial transcriptional activator domain SRP_TPR_like PF17004.5 gi|435851554|ref|YP_007313140.1| - 2.8e-05 24.1 2.0 0.013 15.6 0.3 2.4 1 1 2 3 3 3 3 Putative TPR-like repeat TPR_20 PF14561.6 gi|435851554|ref|YP_007313140.1| - 4.6e-05 23.7 2.5 0.02 15.2 1.3 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|435851554|ref|YP_007313140.1| - 0.0002 21.4 3.3 0.046 13.8 0.1 3.0 2 1 1 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|435851554|ref|YP_007313140.1| - 0.00032 21.2 1.6 0.09 13.2 0.3 2.5 1 1 1 2 2 2 2 Alkyl sulfatase dimerisation FAT PF02259.23 gi|435851554|ref|YP_007313140.1| - 0.00049 19.4 5.6 0.13 11.4 0.9 2.5 1 1 1 2 2 2 2 FAT domain RPN7 PF10602.9 gi|435851554|ref|YP_007313140.1| - 0.0013 18.5 5.4 0.18 11.5 0.5 2.8 1 1 1 3 3 3 2 26S proteasome subunit RPN7 TPR_5 PF12688.7 gi|435851554|ref|YP_007313140.1| - 0.002 18.4 0.4 0.3 11.3 0.1 2.9 2 1 1 3 3 3 1 Tetratrico peptide repeat NRBF2_MIT PF17169.4 gi|435851554|ref|YP_007313140.1| - 0.0024 18.0 1.6 38 4.6 0.0 4.2 1 1 2 4 4 4 0 MIT domain of nuclear receptor-binding factor 2 DUF5113 PF17140.4 gi|435851554|ref|YP_007313140.1| - 0.0038 17.0 10.5 0.021 14.7 0.1 3.3 3 1 1 4 4 3 1 Domain of unknown function (DUF5113) HTH_Bact PF18768.1 gi|435851554|ref|YP_007313140.1| - 0.0067 16.0 2.6 0.32 10.6 0.2 3.7 3 1 0 3 3 3 1 Helix-turn-helix bacterial domain Coatomer_E PF04733.14 gi|435851554|ref|YP_007313140.1| - 0.011 15.2 1.8 0.034 13.5 0.4 2.1 1 1 1 2 2 2 0 Coatomer epsilon subunit PPR PF01535.20 gi|435851554|ref|YP_007313140.1| - 0.016 15.4 2.4 28 5.3 0.0 4.1 5 0 0 5 5 4 0 PPR repeat TPR_15 PF13429.6 gi|435851554|ref|YP_007313140.1| - 0.02 14.1 6.4 0.036 13.3 6.3 1.4 1 1 0 1 1 1 0 Tetratricopeptide repeat TPR_3 PF07720.12 gi|435851554|ref|YP_007313140.1| - 0.023 14.7 3.5 17 5.5 0.1 4.5 5 0 0 5 5 5 0 Tetratricopeptide repeat DUF4971 PF16341.5 gi|435851554|ref|YP_007313140.1| - 0.048 13.5 0.0 0.073 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4971) MIT PF04212.18 gi|435851554|ref|YP_007313140.1| - 0.1 12.7 16.8 0.95 9.6 0.4 4.5 5 0 0 5 5 4 0 MIT (microtubule interacting and transport) domain Ribosomal_S16 PF00886.19 gi|435851554|ref|YP_007313140.1| - 0.12 12.5 2.0 1.5 8.9 2.0 2.7 1 1 0 1 1 1 0 Ribosomal protein S16 DUF1514 PF07438.11 gi|435851554|ref|YP_007313140.1| - 0.13 12.1 1.5 0.16 11.8 0.3 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF1514) DUF1510 PF07423.11 gi|435851554|ref|YP_007313140.1| - 0.32 11.2 7.1 3 8.0 1.4 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF1510) Wzy_C_2 PF11846.8 gi|435851554|ref|YP_007313140.1| - 0.98 9.3 7.1 18 5.2 0.8 3.6 1 1 4 5 5 5 0 Virulence factor membrane-bound polymerase, C-terminal PIG-P PF08510.12 gi|435851555|ref|YP_007313141.1| - 0.03 14.2 0.0 0.058 13.3 0.0 1.4 1 1 0 1 1 1 0 PIG-P Cupin_2 PF07883.11 gi|435851556|ref|YP_007313142.1| - 2.8e-16 59.0 0.0 3.7e-16 58.6 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|435851556|ref|YP_007313142.1| - 0.0017 18.3 0.0 0.0021 18.0 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|435851556|ref|YP_007313142.1| - 0.0069 16.3 0.0 0.0084 16.0 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.22 gi|435851556|ref|YP_007313142.1| - 0.014 15.0 0.0 0.016 14.8 0.0 1.2 1 0 0 1 1 1 0 Cupin CENP-C_C PF11699.8 gi|435851556|ref|YP_007313142.1| - 0.022 14.9 0.0 0.029 14.6 0.0 1.3 1 0 0 1 1 1 0 Mif2/CENP-C like Cupin_3 PF05899.12 gi|435851556|ref|YP_007313142.1| - 0.031 14.0 0.0 0.048 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) AMP-binding PF00501.28 gi|435851557|ref|YP_007313143.1| - 1.3e-16 60.3 0.0 1.7e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme SIS_2 PF13580.6 gi|435851557|ref|YP_007313143.1| - 0.03 14.3 0.0 0.07 13.1 0.0 1.6 2 0 0 2 2 2 0 SIS domain DUF420 PF04238.12 gi|435851558|ref|YP_007313144.1| - 0.051 13.9 11.7 0.095 13.0 11.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF420) FixQ PF05545.11 gi|435851558|ref|YP_007313144.1| - 8.8 6.4 9.9 8.4 6.5 0.0 3.4 4 0 0 4 4 4 0 Cbb3-type cytochrome oxidase component FixQ DUF5616 PF18481.1 gi|435851559|ref|YP_007313145.1| - 1.8e-45 154.7 0.6 2.3e-45 154.4 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|435851559|ref|YP_007313145.1| - 4.8e-23 80.6 0.1 9.6e-23 79.6 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF434) Bombinin PF05298.11 gi|435851559|ref|YP_007313145.1| - 0.11 12.2 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Bombinin SLATT_4 PF18186.1 gi|435851560|ref|YP_007313146.1| - 0.023 14.3 1.8 0.027 14.1 0.3 1.8 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 4 Nup54 PF13874.6 gi|435851560|ref|YP_007313146.1| - 0.07 13.2 2.1 0.13 12.4 2.1 1.4 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 DUF2681 PF10883.8 gi|435851560|ref|YP_007313146.1| - 0.096 13.1 5.0 0.076 13.4 3.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2681) LapA_dom PF06305.11 gi|435851560|ref|YP_007313146.1| - 0.26 11.2 0.1 0.26 11.2 0.1 2.7 2 1 1 3 3 3 0 Lipopolysaccharide assembly protein A domain FTSW_RODA_SPOVE PF01098.19 gi|435851560|ref|YP_007313146.1| - 0.28 10.1 6.8 0.067 12.2 3.0 1.7 2 0 0 2 2 2 0 Cell cycle protein FapA PF03961.13 gi|435851560|ref|YP_007313146.1| - 0.42 9.2 8.4 0.56 8.7 8.4 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A Halogen_Hydrol PF10112.9 gi|435851560|ref|YP_007313146.1| - 0.79 9.7 9.3 0.36 10.8 0.1 2.2 2 0 0 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein UbiA PF01040.18 gi|435851561|ref|YP_007313147.1| - 1e-35 123.3 15.5 1e-35 123.3 15.5 1.2 1 1 0 1 1 1 1 UbiA prenyltransferase family RimK PF08443.11 gi|435851562|ref|YP_007313148.1| - 2.3e-31 108.9 0.0 3.5e-31 108.3 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|435851562|ref|YP_007313148.1| - 1.5e-15 57.1 0.0 2.7e-15 56.2 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain Rimk_N PF18030.1 gi|435851562|ref|YP_007313148.1| - 4.2e-11 43.1 0.0 6.9e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 RimK PreATP-grasp domain ATP-grasp_3 PF02655.14 gi|435851562|ref|YP_007313148.1| - 1.4e-09 38.2 0.0 2.4e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|435851562|ref|YP_007313148.1| - 4.9e-08 32.5 0.0 3.9e-07 29.6 0.0 2.4 1 1 0 1 1 1 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 gi|435851562|ref|YP_007313148.1| - 5.5e-07 29.1 0.1 4e-05 23.0 0.0 2.3 3 0 0 3 3 3 1 Sugar-transfer associated ATP-grasp CP_ATPgrasp_2 PF14403.6 gi|435851562|ref|YP_007313148.1| - 0.0015 17.5 0.0 0.3 10.0 0.0 2.1 2 0 0 2 2 2 2 Circularly permuted ATP-grasp type 2 ATP-grasp PF02222.22 gi|435851562|ref|YP_007313148.1| - 0.0076 15.8 0.0 0.017 14.7 0.0 1.8 2 1 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|435851562|ref|YP_007313148.1| - 0.18 11.6 0.0 0.4 10.4 0.0 1.6 1 1 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon PTH2 PF01981.16 gi|435851563|ref|YP_007313149.1| - 2.7e-39 134.1 0.0 3e-39 133.9 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Prismane PF03063.20 gi|435851565|ref|YP_007313151.1| - 2.5e-131 438.9 0.1 2.8e-131 438.7 0.1 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Rieske PF00355.26 gi|435851566|ref|YP_007313152.1| - 3.6e-17 62.1 0.0 4.6e-17 61.7 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|435851566|ref|YP_007313152.1| - 1.1e-10 41.4 0.0 2.4e-10 40.3 0.0 1.5 1 1 0 1 1 1 1 Rieske-like [2Fe-2S] domain Ribosomal_S17_N PF16205.5 gi|435851566|ref|YP_007313152.1| - 0.026 14.9 0.1 2.7 8.4 0.0 2.3 2 0 0 2 2 2 0 Ribosomal_S17 N-terminal FMN_red PF03358.15 gi|435851567|ref|YP_007313153.1| - 2.8e-24 85.6 0.0 3.6e-24 85.3 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|435851567|ref|YP_007313153.1| - 7.1e-15 55.2 0.0 9.3e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|435851567|ref|YP_007313153.1| - 6.9e-05 23.1 0.0 0.00012 22.3 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain DUF2284 PF10050.9 gi|435851567|ref|YP_007313153.1| - 0.065 13.0 0.2 0.14 11.9 0.1 1.5 2 0 0 2 2 2 0 Predicted metal-binding protein (DUF2284) Abhydrolase_1 PF00561.20 gi|435851568|ref|YP_007313154.1| - 2.1e-25 89.9 0.0 5e-18 65.7 0.1 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|435851568|ref|YP_007313154.1| - 1.5e-20 74.8 1.4 1.8e-20 74.5 1.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|435851568|ref|YP_007313154.1| - 1.2e-16 60.7 0.0 2.4e-16 59.7 0.0 1.4 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 gi|435851568|ref|YP_007313154.1| - 3.4e-06 26.0 0.0 4.4e-06 25.6 0.0 1.0 1 0 0 1 1 1 1 Ndr family Abhydrolase_4 PF08386.10 gi|435851568|ref|YP_007313154.1| - 8.7e-06 25.8 0.0 4.6e-05 23.5 0.0 2.0 2 0 0 2 2 2 1 TAP-like protein SCFA_trans PF02667.14 gi|435851568|ref|YP_007313154.1| - 0.024 13.6 0.0 0.032 13.2 0.0 1.2 1 0 0 1 1 1 0 Short chain fatty acid transporter Thioesterase PF00975.20 gi|435851568|ref|YP_007313154.1| - 0.12 12.5 0.0 0.45 10.6 0.0 1.8 2 0 0 2 2 2 0 Thioesterase domain DLH PF01738.18 gi|435851568|ref|YP_007313154.1| - 0.12 11.9 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Dienelactone hydrolase family Hemerythrin PF01814.23 gi|435851569|ref|YP_007313155.1| - 1e-17 65.0 1.9 1e-17 65.0 1.9 2.1 2 1 0 2 2 2 1 Hemerythrin HHE cation binding domain UPF0228 PF05727.11 gi|435851569|ref|YP_007313155.1| - 0.02 14.7 0.7 0.032 14.1 0.7 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0228) FOXP-CC PF16159.5 gi|435851569|ref|YP_007313155.1| - 4.6 8.0 6.6 40 4.9 5.9 2.7 1 1 1 2 2 2 0 FOXP coiled-coil domain DUF1699 PF08004.11 gi|435851570|ref|YP_007313156.1| - 4.8e-62 207.4 1.4 5.4e-62 207.2 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) PepSY PF03413.19 gi|435851571|ref|YP_007313157.1| - 0.034 14.7 1.1 0.12 12.9 1.1 1.8 1 1 0 1 1 1 0 Peptidase propeptide and YPEB domain DUF4577 PF15145.6 gi|435851572|ref|YP_007313158.1| - 0.0013 18.8 0.1 0.0014 18.6 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4577) DUF5385 PF17359.2 gi|435851572|ref|YP_007313158.1| - 0.014 15.0 0.4 0.016 14.8 0.4 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5385) DUF948 PF06103.11 gi|435851572|ref|YP_007313158.1| - 0.038 14.3 0.3 0.046 14.0 0.3 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF1043 PF06295.12 gi|435851572|ref|YP_007313158.1| - 0.039 14.0 0.2 0.061 13.3 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1043) HTH_5 PF01022.20 gi|435851573|ref|YP_007313159.1| - 1.2e-13 50.7 0.2 1.7e-13 50.2 0.2 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|435851573|ref|YP_007313159.1| - 2.2e-12 46.8 0.2 3.1e-12 46.4 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|435851573|ref|YP_007313159.1| - 2.7e-06 27.2 0.1 3.4e-06 26.8 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|435851573|ref|YP_007313159.1| - 4e-06 26.7 0.2 6.3e-06 26.0 0.2 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|435851573|ref|YP_007313159.1| - 8.8e-06 25.2 0.1 3.1e-05 23.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|435851573|ref|YP_007313159.1| - 1.5e-05 24.9 0.0 2.2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|435851573|ref|YP_007313159.1| - 1.6e-05 24.7 0.1 2.1e-05 24.3 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|435851573|ref|YP_007313159.1| - 0.0001 22.2 0.4 0.0019 18.1 0.4 2.1 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family Rrf2 PF02082.20 gi|435851573|ref|YP_007313159.1| - 0.00079 19.7 0.1 0.0011 19.2 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|435851573|ref|YP_007313159.1| - 0.0018 18.4 0.1 0.003 17.7 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.6 gi|435851573|ref|YP_007313159.1| - 0.0043 17.2 0.2 0.0059 16.8 0.2 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Mga PF05043.13 gi|435851573|ref|YP_007313159.1| - 0.0076 16.8 0.8 0.046 14.3 0.7 2.0 1 1 0 1 1 1 1 Mga helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|435851573|ref|YP_007313159.1| - 0.009 15.8 0.0 0.014 15.1 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_Crp_2 PF13545.6 gi|435851573|ref|YP_007313159.1| - 0.011 15.7 0.1 0.015 15.3 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HxlR PF01638.17 gi|435851573|ref|YP_007313159.1| - 0.034 14.0 0.2 0.044 13.6 0.2 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_41 PF14502.6 gi|435851573|ref|YP_007313159.1| - 0.045 13.4 0.0 0.07 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.21 gi|435851573|ref|YP_007313159.1| - 0.052 13.2 0.0 0.084 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|435851573|ref|YP_007313159.1| - 0.1 12.4 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|435851573|ref|YP_007313159.1| - 0.13 12.3 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix TRAM PF01938.20 gi|435851574|ref|YP_007313160.1| - 8.7e-17 60.9 1.2 9.3e-17 60.8 1.2 1.0 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.24 gi|435851574|ref|YP_007313160.1| - 0.045 13.5 0.1 0.053 13.3 0.1 1.3 1 1 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) TruD PF01142.18 gi|435851575|ref|YP_007313161.1| - 5.7e-164 545.9 0.2 6.5e-164 545.7 0.2 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) CTP_synth_N PF06418.14 gi|435851576|ref|YP_007313162.1| - 1.5e-127 424.4 0.6 2.3e-127 423.8 0.6 1.3 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|435851576|ref|YP_007313162.1| - 4.4e-55 186.4 0.0 9e-55 185.4 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|435851576|ref|YP_007313162.1| - 1.7e-06 27.9 0.0 9.3e-06 25.5 0.0 2.2 3 1 0 3 3 3 1 Peptidase C26 CbiA PF01656.23 gi|435851576|ref|YP_007313162.1| - 0.00028 21.0 0.0 0.0013 18.8 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2070 PF09843.9 gi|435851577|ref|YP_007313163.1| - 6.2 5.0 9.2 8.4 4.5 9.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Trm112p PF03966.16 gi|435851578|ref|YP_007313164.1| - 3.4e-10 40.3 1.9 6.1e-10 39.5 1.9 1.4 1 1 0 1 1 1 1 Trm112p-like protein Lar_restr_allev PF14354.6 gi|435851578|ref|YP_007313164.1| - 4.6e-05 23.7 0.2 4.8e-05 23.7 0.2 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Elf1 PF05129.13 gi|435851578|ref|YP_007313164.1| - 0.00099 19.1 0.0 0.0011 18.9 0.0 1.0 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Cys_rich_KTR PF14205.6 gi|435851578|ref|YP_007313164.1| - 0.0024 17.6 1.1 0.0049 16.6 1.1 1.5 1 1 0 1 1 1 1 Cysteine-rich KTR zf-piccolo PF05715.13 gi|435851578|ref|YP_007313164.1| - 0.025 14.7 0.6 0.036 14.2 0.6 1.2 1 0 0 1 1 1 0 Piccolo Zn-finger C1_4 PF07975.12 gi|435851578|ref|YP_007313164.1| - 0.025 14.8 0.1 0.035 14.4 0.1 1.2 1 0 0 1 1 1 0 TFIIH C1-like domain zf-RRPl_C4 PF17026.5 gi|435851578|ref|YP_007313164.1| - 0.031 14.4 1.4 0.046 13.8 1.4 1.5 1 1 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type A2L_zn_ribbon PF08792.10 gi|435851578|ref|YP_007313164.1| - 0.047 13.4 1.5 0.45 10.3 1.5 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain CK_II_beta PF01214.18 gi|435851578|ref|YP_007313164.1| - 0.054 13.3 0.3 0.057 13.2 0.3 1.0 1 0 0 1 1 1 0 Casein kinase II regulatory subunit ADD_ATRX PF17981.1 gi|435851578|ref|YP_007313164.1| - 0.49 10.3 2.7 0.78 9.7 2.7 1.5 1 1 0 1 1 1 0 Cysteine Rich ADD domain Gate PF07670.14 gi|435851579|ref|YP_007313165.1| - 0.00045 20.5 21.7 0.025 14.9 3.7 3.1 2 2 1 3 3 3 2 Nucleoside recognition Response_reg PF00072.24 gi|435851580|ref|YP_007313166.1| - 2.3e-28 98.6 2.3 2.5e-28 98.5 2.3 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheB_methylest PF01339.17 gi|435851581|ref|YP_007313167.1| - 4.1e-60 202.4 0.3 8.8e-60 201.3 0.3 1.6 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.24 gi|435851581|ref|YP_007313167.1| - 1.4e-22 80.0 1.0 1e-21 77.2 0.1 2.6 3 0 0 3 3 3 1 Response regulator receiver domain TIM PF00121.18 gi|435851581|ref|YP_007313167.1| - 0.065 12.6 0.2 3.4 7.0 0.1 2.1 2 0 0 2 2 2 0 Triosephosphate isomerase P2 PF07194.11 gi|435851582|ref|YP_007313168.1| - 2.4e-23 82.0 1.4 9.5e-23 80.1 1.4 2.1 1 0 0 1 1 1 1 P2 response regulator binding domain CheW PF01584.19 gi|435851582|ref|YP_007313168.1| - 7.2e-23 80.8 2.1 1.6e-22 79.6 1.2 2.0 2 0 0 2 2 2 1 CheW-like domain Hpt PF01627.23 gi|435851582|ref|YP_007313168.1| - 7.4e-20 71.0 0.2 2e-19 69.6 0.2 1.8 1 0 0 1 1 1 1 Hpt domain HATPase_c PF02518.26 gi|435851582|ref|YP_007313168.1| - 6.9e-17 62.0 0.4 2.6e-16 60.1 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H-kinase_dim PF02895.14 gi|435851582|ref|YP_007313168.1| - 7.5e-17 61.5 3.2 7.5e-17 61.5 3.2 2.1 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.6 gi|435851582|ref|YP_007313168.1| - 0.00012 21.9 0.0 0.00036 20.4 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|435851582|ref|YP_007313168.1| - 0.00094 19.1 0.1 0.011 15.7 0.0 2.6 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain FumaraseC_C PF10415.9 gi|435851582|ref|YP_007313168.1| - 0.11 12.9 1.9 1 9.8 0.0 3.2 3 0 0 3 3 3 0 Fumarase C C-terminus Fes1 PF08609.10 gi|435851582|ref|YP_007313168.1| - 0.23 12.4 10.7 0.14 13.1 2.8 3.2 2 1 0 2 2 2 0 Nucleotide exchange factor Fes1 Snf7 PF03357.21 gi|435851582|ref|YP_007313168.1| - 1.4 8.5 15.0 0.023 14.3 5.5 2.6 2 1 0 2 2 2 0 Snf7 CheC PF04509.12 gi|435851583|ref|YP_007313169.1| - 1.7e-05 24.6 0.0 4.1e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 CheC-like family CheX PF13690.6 gi|435851583|ref|YP_007313169.1| - 0.0022 18.1 0.0 0.038 14.2 0.0 2.3 1 1 1 2 2 2 1 Chemotaxis phosphatase CheX CheR PF01739.18 gi|435851584|ref|YP_007313170.1| - 1.5e-52 177.9 0.1 2.3e-52 177.3 0.1 1.3 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|435851584|ref|YP_007313170.1| - 6.5e-13 48.2 2.3 2.8e-12 46.2 0.5 2.3 2 0 0 2 2 2 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 gi|435851584|ref|YP_007313170.1| - 0.0026 18.5 0.1 0.051 14.3 0.1 2.4 1 1 0 1 1 1 1 Methyltransferase domain DUF5049 PF16468.5 gi|435851584|ref|YP_007313170.1| - 0.008 16.1 0.1 0.021 14.7 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF5049) Methyltransf_25 PF13649.6 gi|435851584|ref|YP_007313170.1| - 0.027 15.2 0.0 1.4 9.6 0.0 2.5 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435851584|ref|YP_007313170.1| - 0.039 14.6 0.0 1 10.0 0.0 2.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|435851584|ref|YP_007313170.1| - 0.043 13.6 0.1 4.6 7.0 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain UN_NPL4 PF11543.8 gi|435851584|ref|YP_007313170.1| - 0.35 11.4 2.6 0.54 10.8 0.4 2.4 3 0 0 3 3 3 0 Nuclear pore localisation protein NPL4 CheC PF04509.12 gi|435851585|ref|YP_007313171.1| - 1.6e-14 53.5 0.2 1.2e-08 34.7 0.2 2.4 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|435851585|ref|YP_007313171.1| - 3.5e-08 33.5 0.5 0.00018 21.6 0.0 2.5 3 0 0 3 3 3 2 Chemotaxis phosphatase CheX CheD PF03975.13 gi|435851586|ref|YP_007313172.1| - 5.8e-33 113.3 0.1 7.1e-33 113.0 0.1 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction DUF2621 PF11084.8 gi|435851587|ref|YP_007313173.1| - 0.0057 16.6 0.2 0.012 15.5 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2621) DUF998 PF06197.13 gi|435851587|ref|YP_007313173.1| - 0.0062 16.2 6.1 0.012 15.2 6.2 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF998) Git3 PF11710.8 gi|435851587|ref|YP_007313173.1| - 0.1 12.4 3.8 0.16 11.7 3.8 1.3 1 0 0 1 1 1 0 G protein-coupled glucose receptor regulating Gpa2 CheC PF04509.12 gi|435851588|ref|YP_007313174.1| - 3.4e-14 52.5 0.1 7e-06 25.8 0.0 2.6 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|435851588|ref|YP_007313174.1| - 3.5e-12 46.3 0.3 8.7e-11 41.9 0.1 2.2 2 0 0 2 2 2 1 Chemotaxis phosphatase CheX Pro-NT_NN PF07421.11 gi|435851588|ref|YP_007313174.1| - 0.081 13.2 0.1 0.13 12.5 0.1 1.3 1 0 0 1 1 1 0 Neurotensin/neuromedin N precursor FliM PF02154.15 gi|435851588|ref|YP_007313174.1| - 0.14 12.0 1.0 0.27 11.1 1.0 1.6 1 1 0 1 1 1 0 Flagellar motor switch protein FliM DUF4214 PF13946.6 gi|435851591|ref|YP_007313177.1| - 1.6e-11 44.1 0.0 3.5e-11 43.0 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4214) Methyltransf_23 PF13489.6 gi|435851591|ref|YP_007313177.1| - 3.1e-05 23.8 0.1 5.1e-05 23.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435851591|ref|YP_007313177.1| - 0.0015 19.1 0.0 0.0028 18.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|435851591|ref|YP_007313177.1| - 0.013 16.3 0.0 0.022 15.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|435851591|ref|YP_007313177.1| - 0.071 13.8 0.0 0.13 12.9 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain GntP_permease PF02447.16 gi|435851592|ref|YP_007313178.1| - 5.7e-62 209.8 26.9 8e-62 209.4 26.9 1.1 1 0 0 1 1 1 1 GntP family permease CitMHS PF03600.16 gi|435851592|ref|YP_007313178.1| - 3.7e-05 23.1 36.2 4.3e-05 22.9 35.6 1.4 1 1 0 1 1 1 1 Citrate transporter Phage_P2_GpE PF06528.12 gi|435851592|ref|YP_007313178.1| - 0.46 10.1 2.5 1 8.9 0.1 2.3 2 0 0 2 2 2 0 Phage P2 GpE FpoO PF10621.9 gi|435851593|ref|YP_007313179.1| - 3.1e-53 178.8 2.8 3.6e-53 178.5 2.8 1.0 1 0 0 1 1 1 1 F420H2 dehydrogenase subunit FpoO zf-AD PF07776.15 gi|435851593|ref|YP_007313179.1| - 0.0026 17.9 4.0 0.02 15.1 4.5 2.0 1 1 1 2 2 2 2 Zinc-finger associated domain (zf-AD) PhnA_Zn_Ribbon PF08274.12 gi|435851593|ref|YP_007313179.1| - 0.22 11.5 0.3 0.22 11.5 0.3 2.4 3 0 0 3 3 3 0 PhnA Zinc-Ribbon Proton_antipo_M PF00361.20 gi|435851594|ref|YP_007313180.1| - 7.6e-74 248.5 31.7 7.6e-74 248.5 31.7 2.2 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|435851594|ref|YP_007313180.1| - 0.051 13.6 0.6 0.051 13.6 0.6 3.5 4 0 0 4 4 4 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus GET2 PF08690.10 gi|435851594|ref|YP_007313180.1| - 1.3 8.7 2.9 2.9 7.5 2.9 1.5 1 0 0 1 1 1 0 GET complex subunit GET2 Proton_antipo_M PF00361.20 gi|435851595|ref|YP_007313181.1| - 4.1e-69 233.0 31.5 4.1e-69 233.0 31.5 2.2 2 0 0 2 2 2 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 gi|435851595|ref|YP_007313181.1| - 0.0096 16.0 6.8 0.0096 16.0 6.8 5.2 3 3 1 5 5 5 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus VirArc_Nuclease PF12187.8 gi|435851595|ref|YP_007313181.1| - 0.045 13.3 0.1 0.085 12.4 0.1 1.4 1 0 0 1 1 1 0 Viral/Archaeal nuclease Proton_antipo_M PF00361.20 gi|435851596|ref|YP_007313182.1| - 3.4e-76 256.2 24.2 3.4e-76 256.2 24.2 2.4 2 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|435851596|ref|YP_007313182.1| - 1.2e-17 63.7 0.7 1.2e-17 63.7 0.7 4.4 5 0 0 5 5 5 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_C PF01010.19 gi|435851596|ref|YP_007313182.1| - 0.013 15.2 2.1 0.013 15.2 2.1 2.5 2 1 0 2 2 2 0 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Oxidored_q2 PF00420.24 gi|435851597|ref|YP_007313183.1| - 5.1e-24 83.9 5.8 5.6e-24 83.8 5.8 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BMC PF00936.19 gi|435851597|ref|YP_007313183.1| - 0.072 13.1 0.1 0.1 12.6 0.1 1.2 1 0 0 1 1 1 0 BMC domain Oxidored_q3 PF00499.20 gi|435851598|ref|YP_007313184.1| - 1.6e-11 44.1 4.9 1.8e-11 44.0 4.9 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Oxidored_q3 PF00499.20 gi|435851599|ref|YP_007313185.1| - 5.9e-22 77.9 11.8 5.9e-22 77.9 11.8 1.6 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Peptidase_U4 PF03419.13 gi|435851599|ref|YP_007313185.1| - 0.045 13.1 9.0 0.049 12.9 9.0 1.0 1 0 0 1 1 1 0 Sporulation factor SpoIIGA DUF4040 PF13244.6 gi|435851599|ref|YP_007313185.1| - 0.24 11.6 17.9 0.43 10.8 17.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4040) DUF3165 PF11364.8 gi|435851599|ref|YP_007313185.1| - 0.55 10.6 14.9 1.1 9.6 14.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3165) DUF2101 PF09874.9 gi|435851599|ref|YP_007313185.1| - 1.9 8.2 9.9 3.2 7.4 9.9 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2101) Fer4 PF00037.27 gi|435851600|ref|YP_007313186.1| - 9.2e-15 53.8 14.3 3.4e-09 36.1 3.2 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435851600|ref|YP_007313186.1| - 1e-11 44.8 17.4 3.1e-09 36.8 6.6 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435851600|ref|YP_007313186.1| - 2.5e-11 44.0 6.6 2.5e-11 44.0 6.6 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435851600|ref|YP_007313186.1| - 1.8e-09 38.4 4.3 0.00029 21.7 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|435851600|ref|YP_007313186.1| - 3e-08 33.7 8.0 5.8e-08 32.8 8.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435851600|ref|YP_007313186.1| - 3.4e-08 33.5 8.8 3.4e-08 33.5 8.8 1.8 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435851600|ref|YP_007313186.1| - 2.4e-06 27.3 10.4 0.00023 21.1 2.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|435851600|ref|YP_007313186.1| - 4.5e-06 27.0 9.0 6e-05 23.4 10.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|435851600|ref|YP_007313186.1| - 4.6e-05 24.2 5.3 0.0086 16.9 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435851600|ref|YP_007313186.1| - 8.7e-05 22.4 5.0 8.7e-05 22.4 5.0 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|435851600|ref|YP_007313186.1| - 0.00033 20.8 2.5 0.34 11.1 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435851600|ref|YP_007313186.1| - 0.00043 20.6 12.5 0.0044 17.4 1.8 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|435851600|ref|YP_007313186.1| - 0.00044 20.7 11.0 0.11 13.1 11.4 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|435851600|ref|YP_007313186.1| - 0.0012 19.4 10.5 0.0023 18.5 2.5 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|435851600|ref|YP_007313186.1| - 0.0038 18.1 18.9 0.05 14.6 2.5 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|435851600|ref|YP_007313186.1| - 0.011 16.5 0.5 0.011 16.5 0.5 2.8 3 1 0 3 3 2 0 4Fe-4S single cluster domain NADHdh PF00146.21 gi|435851601|ref|YP_007313187.1| - 1.4e-109 366.1 22.1 1.6e-109 365.8 22.1 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.19 gi|435851602|ref|YP_007313188.1| - 3.9e-89 298.4 0.1 2e-87 292.7 0.1 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|435851602|ref|YP_007313188.1| - 4e-08 32.6 0.0 5.5e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 gi|435851603|ref|YP_007313189.1| - 2.6e-34 118.5 0.0 3.5e-34 118.1 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LBP_BPI_CETP_C PF02886.17 gi|435851603|ref|YP_007313189.1| - 0.055 12.9 0.0 0.074 12.5 0.0 1.2 1 0 0 1 1 1 0 LBP / BPI / CETP family, C-terminal domain Oxidored_q6 PF01058.22 gi|435851604|ref|YP_007313190.1| - 6.8e-23 80.9 0.0 9.9e-23 80.4 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.19 gi|435851605|ref|YP_007313191.1| - 3.9e-31 107.2 5.2 5.1e-31 106.8 4.9 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF4428 PF14471.6 gi|435851606|ref|YP_007313192.1| - 0.0058 16.5 7.6 0.23 11.4 2.1 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF4428) A2L_zn_ribbon PF08792.10 gi|435851606|ref|YP_007313192.1| - 0.028 14.1 0.4 0.028 14.1 0.4 3.4 3 1 1 4 4 3 0 A2L zinc ribbon domain DUF35_N PF12172.8 gi|435851606|ref|YP_007313192.1| - 0.043 13.7 1.9 1.3 9.0 0.1 2.8 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.7 gi|435851606|ref|YP_007313192.1| - 0.05 13.6 0.7 0.05 13.6 0.7 2.5 3 0 0 3 3 3 0 Transposase zinc-ribbon domain Prok-RING_2 PF14445.6 gi|435851606|ref|YP_007313192.1| - 0.13 12.5 0.2 0.13 12.5 0.2 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 2 zf-piccolo PF05715.13 gi|435851606|ref|YP_007313192.1| - 0.18 12.0 3.6 3.8 7.7 0.4 2.4 2 0 0 2 2 2 0 Piccolo Zn-finger TF_Zn_Ribbon PF08271.12 gi|435851606|ref|YP_007313192.1| - 0.22 11.1 13.5 1.2 8.7 3.6 2.8 2 1 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|435851606|ref|YP_007313192.1| - 0.35 10.3 11.9 0.52 9.8 0.2 3.6 4 0 0 4 4 4 0 zinc-ribbon domain zf-ACC PF17848.1 gi|435851606|ref|YP_007313192.1| - 0.58 10.3 0.2 0.58 10.3 0.2 3.3 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zf_UBZ PF18439.1 gi|435851606|ref|YP_007313192.1| - 0.58 9.8 6.6 1 9.0 0.2 3.1 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|435851606|ref|YP_007313192.1| - 0.67 10.0 6.8 0.66 10.1 0.2 2.9 2 2 0 2 2 2 0 Double zinc ribbon GFA PF04828.14 gi|435851606|ref|YP_007313192.1| - 0.74 10.2 4.5 0.23 11.8 0.3 2.3 2 1 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Arc_trans_TRASH PF08394.10 gi|435851606|ref|YP_007313192.1| - 0.88 10.0 10.1 0.15 12.4 1.7 3.4 3 0 0 3 3 3 0 Archaeal TRASH domain zinc_ribbon_5 PF13719.6 gi|435851606|ref|YP_007313192.1| - 1.7 8.5 4.9 3 7.7 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain C1_1 PF00130.22 gi|435851606|ref|YP_007313192.1| - 2.1 8.3 8.4 1.5 8.7 0.9 2.9 2 2 1 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Sgf11 PF08209.11 gi|435851606|ref|YP_007313192.1| - 3 7.5 6.2 0.98 9.0 0.2 2.8 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) PhnA_Zn_Ribbon PF08274.12 gi|435851606|ref|YP_007313192.1| - 3.1 7.8 6.5 1 9.4 0.1 3.0 3 0 0 3 3 3 0 PhnA Zinc-Ribbon eIF-5_eIF-2B PF01873.17 gi|435851606|ref|YP_007313192.1| - 4.1 7.3 6.3 0.72 9.7 1.2 2.3 1 1 0 2 2 2 0 Domain found in IF2B/IF5 Zn-ribbon_8 PF09723.10 gi|435851606|ref|YP_007313192.1| - 5.5 7.2 8.5 1.1 9.4 0.7 3.0 2 2 1 3 3 3 0 Zinc ribbon domain DUF22 PF01629.16 gi|435851607|ref|YP_007313193.1| - 5.9e-38 128.8 0.1 7.6e-38 128.5 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF22 HTH_24 PF13412.6 gi|435851608|ref|YP_007313194.1| - 1.7e-13 49.9 0.0 2.9e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|435851608|ref|YP_007313194.1| - 6.7e-13 48.2 0.0 1e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|435851608|ref|YP_007313194.1| - 3e-08 33.5 0.3 1.6e-07 31.2 0.1 2.0 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_IclR PF09339.10 gi|435851608|ref|YP_007313194.1| - 2.7e-06 27.1 0.1 4.3e-06 26.4 0.1 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|435851608|ref|YP_007313194.1| - 6.8e-06 25.9 0.1 1.9e-05 24.5 0.1 1.8 2 0 0 2 2 1 1 HTH domain HTH_Mga PF08280.11 gi|435851608|ref|YP_007313194.1| - 5.2e-05 23.2 0.6 9.7e-05 22.3 0.1 1.7 2 0 0 2 2 1 1 M protein trans-acting positive regulator (MGA) HTH domain MarR_2 PF12802.7 gi|435851608|ref|YP_007313194.1| - 6.5e-05 22.8 0.0 0.0001 22.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|435851608|ref|YP_007313194.1| - 0.0011 18.9 0.0 0.0025 17.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|435851608|ref|YP_007313194.1| - 0.0025 18.0 0.7 0.0044 17.2 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Mga PF05043.13 gi|435851608|ref|YP_007313194.1| - 0.003 18.1 0.8 0.054 14.1 0.0 2.4 2 1 0 2 2 2 1 Mga helix-turn-helix domain MarR PF01047.22 gi|435851608|ref|YP_007313194.1| - 0.0051 16.7 0.1 0.011 15.6 0.1 1.6 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.9 gi|435851608|ref|YP_007313194.1| - 0.0078 16.3 0.3 0.023 14.8 0.0 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.6 gi|435851608|ref|YP_007313194.1| - 0.008 16.6 0.2 0.035 14.6 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|435851608|ref|YP_007313194.1| - 0.011 16.0 0.1 0.057 13.8 0.1 2.0 2 0 0 2 2 2 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|435851608|ref|YP_007313194.1| - 0.021 14.8 0.1 0.045 13.7 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|435851608|ref|YP_007313194.1| - 0.027 14.3 0.2 0.053 13.3 0.2 1.4 1 0 0 1 1 1 0 HTH DNA binding domain Pup PF05639.11 gi|435851608|ref|YP_007313194.1| - 0.032 15.1 0.3 0.13 13.2 0.0 2.0 2 0 0 2 2 2 0 Pup-like protein TrmB PF01978.19 gi|435851608|ref|YP_007313194.1| - 0.04 13.8 0.0 0.092 12.6 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB FaeA PF04703.12 gi|435851608|ref|YP_007313194.1| - 0.06 13.7 0.1 0.15 12.4 0.0 1.7 2 0 0 2 2 1 0 FaeA-like protein HTH_DeoR PF08220.12 gi|435851608|ref|YP_007313194.1| - 0.065 13.0 0.0 0.19 11.5 0.0 1.8 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PheRS_DBD1 PF18552.1 gi|435851608|ref|YP_007313194.1| - 0.066 13.0 0.8 0.16 11.8 0.1 2.0 2 0 0 2 2 2 0 PheRS DNA binding domain 1 DDRGK PF09756.9 gi|435851608|ref|YP_007313194.1| - 0.096 12.3 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 DDRGK domain Flagellar_put PF12611.8 gi|435851608|ref|YP_007313194.1| - 0.12 12.2 0.3 0.66 9.8 0.3 2.1 1 1 0 1 1 1 0 Putative flagellar LexA_DNA_bind PF01726.16 gi|435851608|ref|YP_007313194.1| - 0.12 12.1 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain OrfB_Zn_ribbon PF07282.11 gi|435851609|ref|YP_007313195.1| - 5.4e-23 80.7 1.8 7.2e-23 80.3 0.5 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|435851609|ref|YP_007313195.1| - 4.5e-08 33.4 0.1 1e-07 32.2 0.1 1.5 1 0 0 1 1 1 1 Probable transposase DUF3347 PF11827.8 gi|435851609|ref|YP_007313195.1| - 0.027 14.6 0.8 0.065 13.4 0.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) DUF2387 PF09526.10 gi|435851609|ref|YP_007313195.1| - 0.054 13.7 3.0 0.96 9.6 0.2 2.9 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) NTS PF15447.6 gi|435851609|ref|YP_007313195.1| - 0.086 13.4 0.0 0.41 11.2 0.0 2.2 2 0 0 2 2 2 0 N-terminal segments of PfEMP1 C1_2 PF03107.16 gi|435851609|ref|YP_007313195.1| - 1.4 9.3 4.8 0.57 10.5 0.4 2.4 2 0 0 2 2 2 0 C1 domain SBP_bac_3 PF00497.20 gi|435851610|ref|YP_007313196.1| - 2.4e-63 213.6 1.1 2.7e-63 213.4 1.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|435851610|ref|YP_007313196.1| - 5.8e-15 55.5 0.7 9.6e-11 41.9 0.1 3.6 2 2 0 2 2 2 2 Ligated ion channel L-glutamate- and glycine-binding site DUF4999 PF16390.5 gi|435851610|ref|YP_007313196.1| - 0.073 13.3 0.0 0.16 12.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function OrfB_IS605 PF01385.19 gi|435851611|ref|YP_007313197.1| - 2.2e-28 98.9 0.9 3.9e-28 98.1 0.9 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|435851611|ref|YP_007313197.1| - 2.4e-22 78.7 0.2 4.5e-22 77.8 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|435851611|ref|YP_007313197.1| - 8.2e-20 70.0 0.2 1.8e-19 68.9 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain zf-piccolo PF05715.13 gi|435851611|ref|YP_007313197.1| - 0.014 15.5 2.9 0.018 15.2 1.0 2.0 2 0 0 2 2 2 0 Piccolo Zn-finger DZR PF12773.7 gi|435851611|ref|YP_007313197.1| - 0.16 12.0 0.6 0.29 11.2 0.6 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|435851611|ref|YP_007313197.1| - 0.18 12.0 1.2 0.36 11.0 1.2 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf-RanBP PF00641.18 gi|435851611|ref|YP_007313197.1| - 1.6 8.1 4.3 7.1 6.0 0.7 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others PIN_2 PF10130.9 gi|435851612|ref|YP_007313198.1| - 6.5e-06 26.4 0.0 6.9e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|435851612|ref|YP_007313198.1| - 0.046 14.5 0.0 0.049 14.4 0.0 1.1 1 0 0 1 1 1 0 PIN domain TrmB PF01978.19 gi|435851614|ref|YP_007313200.1| - 0.063 13.2 0.1 0.16 11.9 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HicA_toxin PF07927.12 gi|435851615|ref|YP_007313201.1| - 5.4e-17 61.6 0.1 6.4e-17 61.3 0.1 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, BOFC_N PF08977.10 gi|435851615|ref|YP_007313201.1| - 0.041 13.9 0.0 0.09 12.8 0.0 1.5 2 0 0 2 2 2 0 Bypass of Forespore C, N terminal HicB_lk_antitox PF15919.5 gi|435851616|ref|YP_007313202.1| - 5.2e-11 42.7 0.0 5.9e-11 42.5 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system OrfB_Zn_ribbon PF07282.11 gi|435851618|ref|YP_007313204.1| - 6.3e-21 74.1 0.6 1.4e-20 73.0 0.6 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|435851618|ref|YP_007313204.1| - 2.7e-12 47.0 0.1 5.2e-12 46.0 0.1 1.5 1 0 0 1 1 1 1 Probable transposase OmpH PF03938.14 gi|435851618|ref|YP_007313204.1| - 0.02 15.2 0.1 0.042 14.2 0.1 1.5 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) ParE_toxin PF05016.15 gi|435851619|ref|YP_007313205.1| - 9.1e-13 48.6 0.2 1e-12 48.5 0.2 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE Gp49 PF05973.14 gi|435851619|ref|YP_007313205.1| - 0.00061 19.9 0.0 0.00073 19.6 0.0 1.1 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) ParE-like_toxin PF15781.5 gi|435851619|ref|YP_007313205.1| - 0.0022 17.9 0.1 0.0069 16.3 0.1 1.7 1 1 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system HigB-like_toxin PF05015.13 gi|435851619|ref|YP_007313205.1| - 0.062 13.7 0.0 0.089 13.2 0.0 1.4 1 1 0 1 1 1 0 RelE-like toxin of type II toxin-antitoxin system HigB VAPB_antitox PF02697.14 gi|435851620|ref|YP_007313206.1| - 0.014 16.1 0.3 0.031 15.0 0.3 1.6 1 1 0 1 1 1 0 Putative antitoxin RHH_1 PF01402.21 gi|435851620|ref|YP_007313206.1| - 0.027 14.4 0.3 0.22 11.5 0.0 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF2089 PF09862.9 gi|435851620|ref|YP_007313206.1| - 0.14 12.2 0.1 0.18 11.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) Acyltransf_C PF16076.5 gi|435851621|ref|YP_007313207.1| - 0.011 15.8 0.4 0.013 15.5 0.4 1.1 1 0 0 1 1 1 0 Acyltransferase C-terminus HAMP_N3 PF18575.1 gi|435851621|ref|YP_007313207.1| - 0.028 14.0 0.0 0.037 13.6 0.0 1.2 1 0 0 1 1 1 0 HAMP N-terminal domain 3 Tho1_MOS11_C PF18592.1 gi|435851621|ref|YP_007313207.1| - 0.04 13.7 0.4 0.054 13.3 0.4 1.2 1 0 0 1 1 1 0 Tho1/MOS11 C-terminal domain Fic PF02661.18 gi|435851623|ref|YP_007313209.1| - 1.2e-09 38.9 1.2 3.7e-08 34.2 1.2 2.6 1 1 0 1 1 1 1 Fic/DOC family Intein_splicing PF14890.6 gi|435851623|ref|YP_007313209.1| - 7e-06 26.0 2.6 6.3e-05 22.9 0.2 2.5 2 1 0 2 2 2 1 Intein splicing domain Ribosomal_L27A PF00828.19 gi|435851623|ref|YP_007313209.1| - 0.15 12.7 0.3 3 8.5 0.2 2.6 1 1 0 2 2 2 0 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Epimerase_2 PF02350.19 gi|435851624|ref|YP_007313210.1| - 3.5e-113 378.0 0.0 4.1e-113 377.8 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_4 PF13439.6 gi|435851624|ref|YP_007313210.1| - 0.0027 17.7 0.0 0.0051 16.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|435851624|ref|YP_007313210.1| - 0.0086 16.5 0.0 0.017 15.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|435851624|ref|YP_007313210.1| - 0.078 13.0 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like MGDG_synth PF06925.11 gi|435851624|ref|YP_007313210.1| - 0.1 12.7 0.0 0.69 10.0 0.0 2.1 2 0 0 2 2 2 0 Monogalactosyldiacylglycerol (MGDG) synthase Polysacc_synt_3 PF13440.6 gi|435851625|ref|YP_007313211.1| - 4.1e-23 82.0 20.5 4.1e-23 82.0 20.5 2.5 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|435851625|ref|YP_007313211.1| - 1.9e-18 66.9 47.8 3e-13 50.0 26.8 3.9 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|435851625|ref|YP_007313211.1| - 8.6e-17 61.4 32.4 8.6e-17 61.4 32.4 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|435851625|ref|YP_007313211.1| - 1.2e-06 27.5 45.4 1.2e-06 27.5 45.4 2.1 1 1 1 2 2 2 1 Lipid II flippase MurJ MatE PF01554.18 gi|435851625|ref|YP_007313211.1| - 6.6e-06 25.9 8.0 6.6e-06 25.9 8.0 4.1 4 1 1 5 5 5 2 MatE WBP-1 PF11669.8 gi|435851625|ref|YP_007313211.1| - 1 10.0 2.6 5 7.8 0.5 2.5 2 0 0 2 2 2 0 WW domain-binding protein 1 DDE_Tnp_ISL3 PF01610.17 gi|435851626|ref|YP_007313212.1| - 1.6e-67 227.7 5.7 2.4e-67 227.2 5.7 1.2 1 0 0 1 1 1 1 Transposase HTH_Tnp_ISL3 PF13542.6 gi|435851626|ref|YP_007313212.1| - 3.3e-15 55.2 0.0 6.2e-15 54.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 gi|435851626|ref|YP_007313212.1| - 5.7e-12 46.1 2.0 1.3e-11 45.0 2.0 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HTH_23 PF13384.6 gi|435851626|ref|YP_007313212.1| - 0.0035 17.1 0.1 0.013 15.3 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain UPF0236 PF06782.11 gi|435851626|ref|YP_007313212.1| - 0.0044 15.7 2.1 0.0095 14.6 0.5 2.3 3 1 0 3 3 3 1 Uncharacterised protein family (UPF0236) Arc_C PF18162.1 gi|435851626|ref|YP_007313212.1| - 0.096 12.6 0.1 8.6 6.3 0.0 2.7 1 1 1 2 2 2 0 Arc C-lobe QueC PF06508.13 gi|435851627|ref|YP_007313213.1| - 8.3e-05 22.2 0.6 0.00042 19.9 0.1 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC PMT_2 PF13231.6 gi|435851628|ref|YP_007313214.1| - 0.0064 16.7 20.9 0.0064 16.7 20.9 4.6 4 1 0 4 4 4 2 Dolichyl-phosphate-mannose-protein mannosyltransferase GDP_Man_Dehyd PF16363.5 gi|435851631|ref|YP_007313217.1| - 2e-64 218.1 0.1 2.3e-64 217.9 0.1 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|435851631|ref|YP_007313217.1| - 5.7e-63 212.6 0.1 6.8e-63 212.3 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|435851631|ref|YP_007313217.1| - 1.1e-22 80.4 0.1 1.4e-22 80.0 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|435851631|ref|YP_007313217.1| - 1.6e-19 70.2 0.2 7.7e-19 67.9 0.2 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|435851631|ref|YP_007313217.1| - 3.8e-15 55.7 0.0 5e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|435851631|ref|YP_007313217.1| - 4.9e-09 35.7 0.5 3.8e-07 29.6 0.5 2.7 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|435851631|ref|YP_007313217.1| - 1.1e-07 32.0 0.0 3.1e-07 30.5 0.0 1.8 1 1 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|435851631|ref|YP_007313217.1| - 1.7e-07 30.9 0.4 7.3e-07 28.8 0.4 2.2 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|435851631|ref|YP_007313217.1| - 7.1e-06 25.7 0.2 1.5e-05 24.7 0.2 1.5 1 1 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|435851631|ref|YP_007313217.1| - 6.8e-05 22.9 0.1 0.00019 21.4 0.1 1.9 1 1 0 1 1 1 1 KR domain adh_short_C2 PF13561.6 gi|435851631|ref|YP_007313217.1| - 0.00015 21.5 0.0 0.00025 20.7 0.0 1.4 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase ApbA PF02558.16 gi|435851631|ref|YP_007313217.1| - 0.00049 19.8 0.0 0.00088 18.9 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|435851631|ref|YP_007313217.1| - 0.0098 16.1 0.1 0.027 14.7 0.1 1.8 1 1 0 1 1 1 1 TrkA-N domain F420_oxidored PF03807.17 gi|435851631|ref|YP_007313217.1| - 0.012 16.1 0.1 0.032 14.8 0.1 1.8 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|435851631|ref|YP_007313217.1| - 0.014 15.7 0.1 0.034 14.4 0.1 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain UDPG_MGDP_dh_N PF03721.14 gi|435851631|ref|YP_007313217.1| - 0.018 14.6 0.4 0.051 13.2 0.1 1.7 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|435851631|ref|YP_007313217.1| - 0.019 14.9 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|435851631|ref|YP_007313217.1| - 0.06 13.5 0.2 0.11 12.6 0.2 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_8 PF13450.6 gi|435851631|ref|YP_007313217.1| - 0.062 13.5 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|435851631|ref|YP_007313217.1| - 0.12 12.9 0.0 0.43 11.2 0.0 2.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Glycos_transf_1 PF00534.20 gi|435851632|ref|YP_007313218.1| - 1.1e-36 125.9 0.0 1.7e-36 125.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|435851632|ref|YP_007313218.1| - 2.2e-30 105.8 0.0 3.3e-30 105.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|435851632|ref|YP_007313218.1| - 7.4e-24 84.7 0.0 1e-23 84.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|435851632|ref|YP_007313218.1| - 2.6e-15 57.2 0.0 3.8e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|435851632|ref|YP_007313218.1| - 4.9e-10 39.7 0.0 1.2e-09 38.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|435851632|ref|YP_007313218.1| - 2.4e-06 27.6 0.3 7.5e-06 26.0 0.3 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|435851632|ref|YP_007313218.1| - 0.1 12.3 0.2 0.51 10.0 0.2 2.0 1 1 0 1 1 1 0 Starch synthase catalytic domain tRNA_Me_trans PF03054.16 gi|435851633|ref|YP_007313219.1| - 0.00011 21.2 0.2 0.00017 20.5 0.2 1.3 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|435851633|ref|YP_007313219.1| - 0.0049 16.0 0.0 0.008 15.3 0.0 1.3 1 0 0 1 1 1 1 NAD synthase TusA PF01206.17 gi|435851633|ref|YP_007313219.1| - 0.02 14.7 0.0 0.15 11.9 0.0 2.4 2 1 1 3 3 3 0 Sulfurtransferase TusA PAPS_reduct PF01507.19 gi|435851633|ref|YP_007313219.1| - 0.081 13.0 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Glycos_transf_2 PF00535.26 gi|435851634|ref|YP_007313220.1| - 3e-21 76.0 0.0 4.2e-21 75.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|435851634|ref|YP_007313220.1| - 0.00018 21.5 0.0 0.00026 21.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|435851634|ref|YP_007313220.1| - 0.0072 16.8 0.0 0.012 16.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF374 PF04028.13 gi|435851634|ref|YP_007313220.1| - 0.018 14.6 0.0 0.13 11.9 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF374) FIVAR PF07554.13 gi|435851635|ref|YP_007313221.1| - 2.9e-08 34.4 30.6 0.00014 22.6 7.7 3.0 3 0 0 3 3 3 2 FIVAR domain DUF4972 PF16342.5 gi|435851635|ref|YP_007313221.1| - 0.00077 19.1 2.7 0.56 9.9 0.4 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF4972) Metal_resist PF13801.6 gi|435851635|ref|YP_007313221.1| - 0.11 12.7 14.1 0.83 9.9 3.2 2.5 1 1 1 2 2 2 0 Heavy-metal resistance ANAPC5 PF12862.7 gi|435851635|ref|YP_007313221.1| - 0.83 9.8 4.1 13 5.9 0.4 2.6 1 1 1 2 2 2 0 Anaphase-promoting complex subunit 5 DUF3562 PF12085.8 gi|435851635|ref|YP_007313221.1| - 2.1 8.0 6.1 1.3 8.7 1.5 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3562) Methyltransf_25 PF13649.6 gi|435851635|ref|YP_007313221.1| - 3.8 8.3 7.3 25 5.6 1.0 2.9 1 1 0 2 2 2 0 Methyltransferase domain DUF148 PF02520.17 gi|435851635|ref|YP_007313221.1| - 4.3 7.5 9.9 12 6.1 2.0 2.4 1 1 1 2 2 2 0 Domain of unknown function DUF148 fn3 PF00041.21 gi|435851635|ref|YP_007313221.1| - 4.8 7.6 12.5 12 6.4 2.5 4.1 2 2 0 2 2 2 0 Fibronectin type III domain OrfB_Zn_ribbon PF07282.11 gi|435851636|ref|YP_007313222.1| - 2.6e-24 84.9 0.6 6.9e-24 83.6 0.6 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|435851636|ref|YP_007313222.1| - 1e-11 45.1 0.3 3.3e-11 43.5 0.1 1.8 1 1 1 2 2 2 1 Probable transposase C1_1 PF00130.22 gi|435851636|ref|YP_007313222.1| - 0.00018 21.3 0.6 0.0004 20.2 0.6 1.5 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_2 PF03107.16 gi|435851636|ref|YP_007313222.1| - 0.00067 19.9 0.5 0.0013 19.0 0.5 1.4 1 0 0 1 1 1 1 C1 domain DZR PF12773.7 gi|435851636|ref|YP_007313222.1| - 0.0093 16.0 0.9 0.017 15.1 0.9 1.4 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|435851636|ref|YP_007313222.1| - 0.012 15.1 0.1 0.023 14.2 0.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|435851636|ref|YP_007313222.1| - 0.012 15.2 1.5 0.022 14.4 1.5 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain FAM76 PF16046.5 gi|435851636|ref|YP_007313222.1| - 0.059 12.7 0.4 0.059 12.7 0.4 1.7 2 0 0 2 2 2 0 FAM76 protein Auto_anti-p27 PF06677.12 gi|435851636|ref|YP_007313222.1| - 0.11 12.7 0.7 0.21 11.8 0.7 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rpr2 PF04032.16 gi|435851636|ref|YP_007313222.1| - 0.12 12.7 2.8 2.6 8.4 1.2 3.4 2 1 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Desulfoferrod_N PF06397.12 gi|435851636|ref|YP_007313222.1| - 0.31 10.7 2.7 9.7 5.9 0.1 2.4 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-ribbon_3 PF13248.6 gi|435851636|ref|YP_007313222.1| - 0.63 9.5 2.8 3.4 7.2 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|435851636|ref|YP_007313222.1| - 2.4 8.0 7.1 55 3.7 7.1 2.4 1 1 1 2 2 2 0 zinc-ribbon domain YdjM PF04307.14 gi|435851637|ref|YP_007313223.1| - 3.4e-05 23.2 9.6 3.4e-05 23.2 9.6 2.0 1 1 1 2 2 2 2 LexA-binding, inner membrane-associated putative hydrolase DUF2304 PF10066.9 gi|435851637|ref|YP_007313223.1| - 0.053 13.8 1.1 0.053 13.8 1.1 2.6 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2304) DDE_3 PF13358.6 gi|435851638|ref|YP_007313224.1| - 1.8e-22 79.7 0.0 2.5e-22 79.2 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_1 PF03184.19 gi|435851638|ref|YP_007313224.1| - 3.4e-05 23.6 0.1 4e-05 23.4 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4635 PF15466.6 gi|435851638|ref|YP_007313224.1| - 0.02 14.4 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4635) DDE_Tnp_ISAZ013 PF07592.11 gi|435851638|ref|YP_007313224.1| - 0.047 12.7 0.0 0.066 12.2 0.0 1.2 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain DUF659 PF04937.15 gi|435851638|ref|YP_007313224.1| - 0.07 13.0 0.0 0.12 12.2 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF 659) rve PF00665.26 gi|435851638|ref|YP_007313224.1| - 0.12 12.5 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Integrase core domain HTH_32 PF13565.6 gi|435851639|ref|YP_007313225.1| - 1.5e-10 41.5 0.1 3.5e-10 40.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|435851639|ref|YP_007313225.1| - 5.2e-10 39.2 0.0 7.7e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|435851639|ref|YP_007313225.1| - 3e-07 30.0 0.2 1.7e-06 27.6 0.0 2.2 3 0 0 3 3 3 1 Homeodomain-like domain HTH_33 PF13592.6 gi|435851639|ref|YP_007313225.1| - 4.6e-06 26.2 0.0 1.1e-05 24.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|435851639|ref|YP_007313225.1| - 3.3e-05 23.9 0.1 7.5e-05 22.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain LZ_Tnp_IS481 PF13011.6 gi|435851639|ref|YP_007313225.1| - 0.0007 20.1 0.0 0.001 19.5 0.0 1.3 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 DUF5623 PF18536.1 gi|435851639|ref|YP_007313225.1| - 0.0012 19.1 0.5 0.17 12.2 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF5623) Terminase_5 PF06056.12 gi|435851639|ref|YP_007313225.1| - 0.061 13.2 0.1 0.31 11.0 0.0 2.1 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) YdjM PF04307.14 gi|435851640|ref|YP_007313226.1| - 4.3e-08 32.7 10.1 5.9e-08 32.2 10.1 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF2231 PF09990.9 gi|435851640|ref|YP_007313226.1| - 0.45 11.0 8.2 0.35 11.3 1.3 2.3 2 1 0 2 2 2 0 Predicted membrane protein (DUF2231) Polysacc_synt PF01943.17 gi|435851643|ref|YP_007313229.1| - 1.1e-06 28.2 29.8 1.1e-06 28.2 29.8 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|435851643|ref|YP_007313229.1| - 0.0063 16.6 3.7 0.0063 16.6 3.7 4.1 2 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain NdhL PF10716.9 gi|435851643|ref|YP_007313229.1| - 2.5 8.1 8.7 0.57 10.2 0.1 3.6 3 1 0 3 3 3 0 NADH dehydrogenase transmembrane subunit Exosortase_EpsH PF09721.10 gi|435851644|ref|YP_007313230.1| - 9.9e-24 84.3 27.6 1.3e-23 83.9 27.6 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) DUF4220 PF13968.6 gi|435851647|ref|YP_007313233.1| - 0.027 13.9 0.2 0.047 13.1 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4220) CPBP PF02517.16 gi|435851648|ref|YP_007313234.1| - 4e-19 68.8 2.8 4e-19 68.8 2.8 2.8 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease Glycos_transf_1 PF00534.20 gi|435851649|ref|YP_007313235.1| - 5.1e-38 130.3 0.0 7.6e-38 129.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|435851649|ref|YP_007313235.1| - 6.7e-31 107.5 0.1 9.8e-31 107.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|435851649|ref|YP_007313235.1| - 1.2e-11 44.8 0.0 2.2e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|435851649|ref|YP_007313235.1| - 5.4e-09 36.3 0.1 1.5e-08 34.9 0.1 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|435851649|ref|YP_007313235.1| - 0.00017 22.1 0.0 0.00045 20.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain NIR_SIR PF01077.22 gi|435851651|ref|YP_007313237.1| - 3.1e-28 98.3 0.0 5e-28 97.6 0.0 1.3 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|435851651|ref|YP_007313237.1| - 7.5e-17 60.9 0.0 1.4e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain GcpE PF04551.14 gi|435851651|ref|YP_007313237.1| - 0.016 14.3 0.2 0.016 14.3 0.2 1.4 2 0 0 2 2 2 0 GcpE protein DUF2059 PF09832.9 gi|435851651|ref|YP_007313237.1| - 0.03 14.4 0.1 0.1 12.7 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2059) PMBR PF09373.10 gi|435851651|ref|YP_007313237.1| - 0.037 14.2 0.1 0.089 13.0 0.1 1.6 1 0 0 1 1 1 0 Pseudomurein-binding repeat Nitrate_red_gam PF02665.14 gi|435851652|ref|YP_007313238.1| - 0.00015 21.4 18.3 0.00025 20.7 1.6 3.2 1 1 2 4 4 4 2 Nitrate reductase gamma subunit CCG PF02754.16 gi|435851653|ref|YP_007313239.1| - 4.2e-31 107.0 7.4 4e-16 59.0 0.0 2.8 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|435851653|ref|YP_007313239.1| - 3.9e-11 43.2 7.5 1.3e-10 41.6 2.3 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435851653|ref|YP_007313239.1| - 2.5e-06 27.5 12.2 0.00031 20.8 0.1 3.7 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435851653|ref|YP_007313239.1| - 5.4e-05 23.7 6.6 5.4e-05 23.7 6.6 3.1 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435851653|ref|YP_007313239.1| - 0.00029 21.4 13.3 0.001 19.6 10.9 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435851653|ref|YP_007313239.1| - 0.0003 21.7 4.9 0.0003 21.7 4.9 2.9 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|435851653|ref|YP_007313239.1| - 0.0007 19.7 14.5 0.002 18.3 10.6 3.4 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|435851653|ref|YP_007313239.1| - 0.0066 17.3 7.0 1.9 9.4 0.2 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435851653|ref|YP_007313239.1| - 0.0096 16.0 1.8 0.0096 16.0 1.8 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|435851653|ref|YP_007313239.1| - 0.029 14.6 5.7 2.4 8.4 0.2 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435851653|ref|YP_007313239.1| - 0.032 14.4 11.8 0.76 10.0 0.5 3.5 4 0 0 4 4 3 0 4Fe-4S dicluster domain zf-FLZ PF04570.14 gi|435851653|ref|YP_007313239.1| - 0.53 9.8 0.1 0.53 9.8 0.1 2.9 3 0 0 3 3 3 0 zinc-finger of the FCS-type, C2-C2 Fer4_6 PF12837.7 gi|435851653|ref|YP_007313239.1| - 0.9 9.7 20.2 0.12 12.5 1.8 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|435851653|ref|YP_007313239.1| - 3.4 8.5 8.9 22 5.9 1.4 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|435851653|ref|YP_007313239.1| - 4.9 7.9 23.2 0.096 13.2 2.3 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain DUF116 PF01976.17 gi|435851654|ref|YP_007313240.1| - 6.9e-48 162.1 2.8 8.3e-48 161.8 2.8 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 DUF116 PF01976.17 gi|435851655|ref|YP_007313241.1| - 1.1e-42 145.2 0.0 1.4e-42 144.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF116 Mtr2 PF10429.9 gi|435851655|ref|YP_007313241.1| - 0.12 12.3 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Nuclear pore RNA shuttling protein Mtr2 TrbC PF04956.13 gi|435851655|ref|YP_007313241.1| - 0.34 11.2 2.3 0.58 10.4 2.3 1.4 1 0 0 1 1 1 0 TrbC/VIRB2 family DUF3458_C PF17432.2 gi|435851656|ref|YP_007313242.1| - 3.7e-36 125.1 3.8 3.7e-36 125.1 3.8 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF3458_C) ARM repeats Peptidase_M1 PF01433.20 gi|435851656|ref|YP_007313242.1| - 6.1e-26 91.3 1.0 1.4e-25 90.1 1.0 1.6 1 0 0 1 1 1 1 Peptidase family M1 domain Peptidase_M1_N PF17900.1 gi|435851656|ref|YP_007313242.1| - 6.4e-11 42.8 0.0 1.7e-10 41.4 0.0 1.7 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain DUF3458 PF11940.8 gi|435851656|ref|YP_007313242.1| - 1.8e-09 37.9 0.0 8.4e-09 35.8 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF3458) Ig-like fold TetR_C_29 PF17938.1 gi|435851656|ref|YP_007313242.1| - 0.1 12.7 0.1 0.34 11.0 0.1 1.8 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Acetyltransf_18 PF18014.1 gi|435851657|ref|YP_007313243.1| - 1.7e-33 115.1 0.0 1.3e-32 112.3 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|435851657|ref|YP_007313243.1| - 1.3e-14 54.5 0.0 1.4e-10 41.4 0.0 2.5 2 1 0 2 2 2 2 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|435851657|ref|YP_007313243.1| - 1.2e-07 32.0 0.0 3.1e-07 30.7 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|435851657|ref|YP_007313243.1| - 7.9e-07 29.1 0.0 1.9e-05 24.6 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|435851657|ref|YP_007313243.1| - 0.0037 17.4 0.0 0.015 15.4 0.0 2.1 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|435851657|ref|YP_007313243.1| - 0.02 15.0 0.1 0.77 9.9 0.0 2.4 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|435851657|ref|YP_007313243.1| - 0.09 12.8 0.0 0.24 11.4 0.0 1.7 1 0 0 1 1 1 0 FR47-like protein Cyt-b5 PF00173.28 gi|435851658|ref|YP_007313244.1| - 1.5e-09 37.9 0.1 1.8e-09 37.6 0.1 1.1 1 0 0 1 1 1 1 Cytochrome b5-like Heme/Steroid binding domain ABC_tran PF00005.27 gi|435851659|ref|YP_007313245.1| - 8.3e-20 71.7 0.0 1.4e-19 70.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435851659|ref|YP_007313245.1| - 9.5e-07 28.9 0.1 0.00079 19.3 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|435851659|ref|YP_007313245.1| - 0.0064 15.2 0.1 0.0095 14.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|435851659|ref|YP_007313245.1| - 0.016 15.7 0.4 0.028 14.9 0.4 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|435851659|ref|YP_007313245.1| - 0.034 13.9 0.4 0.075 12.8 0.1 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|435851659|ref|YP_007313245.1| - 0.14 11.5 2.2 0.17 11.3 0.4 1.8 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|435851659|ref|YP_007313245.1| - 0.16 11.6 0.1 0.21 11.2 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain UPF0051 PF01458.17 gi|435851660|ref|YP_007313246.1| - 1.8e-54 184.7 0.1 3.3e-54 183.9 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Ribosomal_L7Ae PF01248.26 gi|435851662|ref|YP_007313248.1| - 6.8e-27 93.0 1.7 7.8e-27 92.8 1.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family eRF1_3 PF03465.15 gi|435851662|ref|YP_007313248.1| - 0.012 16.0 0.2 0.017 15.6 0.2 1.2 1 1 0 1 1 1 0 eRF1 domain 3 RNase_P_pop3 PF08228.11 gi|435851662|ref|YP_007313248.1| - 0.1 12.7 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 RNase P subunit Pop3 Ribosomal_S28e PF01200.18 gi|435851663|ref|YP_007313249.1| - 3.1e-27 94.4 0.3 3.4e-27 94.2 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|435851664|ref|YP_007313250.1| - 7e-22 77.4 0.6 7.4e-22 77.3 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e YHS PF04945.13 gi|435851664|ref|YP_007313250.1| - 8.3e-05 22.6 1.1 0.00013 22.0 1.1 1.3 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|435851664|ref|YP_007313250.1| - 8.7e-05 22.4 3.8 0.00014 21.8 3.8 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Ta0938 PF11494.8 gi|435851664|ref|YP_007313250.1| - 0.017 15.4 0.1 0.018 15.3 0.1 1.1 1 0 0 1 1 1 0 Ta0938 SerH PF06873.11 gi|435851664|ref|YP_007313250.1| - 0.017 13.9 0.0 0.017 13.9 0.0 1.0 1 0 0 1 1 1 0 Cell surface immobilisation antigen SerH VATC PF18716.1 gi|435851664|ref|YP_007313250.1| - 0.038 13.9 5.1 0.067 13.0 5.1 1.5 1 1 0 1 1 1 0 Vms1-associating treble clef domain DUF3268 PF11672.8 gi|435851664|ref|YP_007313250.1| - 0.073 13.4 0.0 0.077 13.3 0.0 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain zf-FLZ PF04570.14 gi|435851664|ref|YP_007313250.1| - 0.13 11.8 3.6 0.3 10.6 3.6 1.6 1 1 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 NDK PF00334.19 gi|435851665|ref|YP_007313251.1| - 5.2e-55 185.2 0.1 5.8e-55 185.0 0.1 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GTP_EFTU PF00009.27 gi|435851666|ref|YP_007313252.1| - 6.4e-32 110.7 0.5 1.6e-30 106.1 0.1 2.7 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|435851666|ref|YP_007313252.1| - 1.3e-25 89.1 1.7 1.3e-25 89.1 1.7 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|435851666|ref|YP_007313252.1| - 6.9e-21 74.3 6.0 6.9e-21 74.3 6.0 2.5 3 0 0 3 3 3 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|435851666|ref|YP_007313252.1| - 3.6e-10 40.1 9.0 3.3e-07 30.6 0.1 3.2 3 0 0 3 3 3 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|435851666|ref|YP_007313252.1| - 5.6e-09 36.1 1.9 2.5e-08 34.0 0.0 2.7 2 1 0 2 2 2 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|435851666|ref|YP_007313252.1| - 0.011 15.7 0.2 8.4 6.3 0.0 3.2 1 1 1 2 2 2 0 RsgA GTPase Dynamin_N PF00350.23 gi|435851666|ref|YP_007313252.1| - 0.03 14.4 0.6 1.5 8.8 0.0 3.1 3 0 0 3 3 3 0 Dynamin family PduV-EutP PF10662.9 gi|435851666|ref|YP_007313252.1| - 0.048 13.4 0.2 1.3 8.7 0.0 2.9 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Roc PF08477.13 gi|435851666|ref|YP_007313252.1| - 0.05 13.8 0.0 0.27 11.4 0.0 2.3 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase DprA_WH PF17782.1 gi|435851666|ref|YP_007313252.1| - 0.066 13.3 0.0 0.27 11.4 0.0 2.0 2 0 0 2 2 2 0 DprA winged helix domain Ribosomal_S6e PF01092.19 gi|435851667|ref|YP_007313253.1| - 6.8e-43 145.6 0.3 7.7e-43 145.4 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e APH PF01636.23 gi|435851668|ref|YP_007313254.1| - 3e-09 37.2 0.0 4.3e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family HAD_2 PF13419.6 gi|435851669|ref|YP_007313255.1| - 6.7e-21 75.2 0.1 2.4e-20 73.4 0.1 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|435851669|ref|YP_007313255.1| - 3e-12 47.3 0.0 2.3e-11 44.4 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|435851669|ref|YP_007313255.1| - 2.6e-06 27.4 0.0 4.3e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|435851669|ref|YP_007313255.1| - 0.0044 17.4 0.0 0.011 16.2 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Chitin_synth_1 PF01644.17 gi|435851669|ref|YP_007313255.1| - 0.017 15.1 0.0 0.025 14.5 0.0 1.2 1 0 0 1 1 1 0 Chitin synthase Nitroreductase PF00881.24 gi|435851670|ref|YP_007313256.1| - 1.9e-29 102.9 0.0 2.5e-29 102.5 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Fer4 PF00037.27 gi|435851670|ref|YP_007313256.1| - 1.2e-11 43.9 15.0 1.7e-06 27.6 3.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|435851670|ref|YP_007313256.1| - 7.7e-09 36.4 3.8 0.0018 19.2 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|435851670|ref|YP_007313256.1| - 1.4e-08 34.4 15.1 6.2e-05 22.9 2.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|435851670|ref|YP_007313256.1| - 4e-08 32.9 11.8 5.8e-05 23.0 1.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435851670|ref|YP_007313256.1| - 4.7e-08 33.1 10.3 1e-07 32.0 10.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435851670|ref|YP_007313256.1| - 1.3e-07 31.6 8.8 0.0024 18.2 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435851670|ref|YP_007313256.1| - 3.7e-07 30.1 11.4 7.5e-06 26.0 13.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain TM1586_NiRdase PF14512.6 gi|435851670|ref|YP_007313256.1| - 7.8e-07 28.9 0.7 0.027 14.1 0.0 3.1 2 1 1 3 3 3 3 Putative TM nitroreductase Fer4_7 PF12838.7 gi|435851670|ref|YP_007313256.1| - 1e-06 29.2 33.6 4.5e-05 23.9 13.2 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435851670|ref|YP_007313256.1| - 0.00015 22.2 11.5 0.0051 17.3 11.5 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|435851670|ref|YP_007313256.1| - 0.00016 22.0 13.4 0.031 14.7 13.4 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435851670|ref|YP_007313256.1| - 0.0012 18.9 11.8 0.0071 16.5 11.8 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435851670|ref|YP_007313256.1| - 0.0023 18.8 15.4 0.26 12.3 2.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|435851670|ref|YP_007313256.1| - 0.024 15.2 10.3 0.15 12.6 1.2 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I pPIWI_RE_X PF13111.6 gi|435851670|ref|YP_007313256.1| - 0.099 11.8 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 pPIWI_RE module N-terminal domain Fer4_22 PF17179.4 gi|435851670|ref|YP_007313256.1| - 1.1 10.1 13.2 3.1 8.7 3.2 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|435851670|ref|YP_007313256.1| - 1.4 9.1 10.8 43 4.4 11.0 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|435851670|ref|YP_007313256.1| - 4.1 8.2 8.1 1.3 9.8 0.6 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Adenine_deam_C PF13382.6 gi|435851672|ref|YP_007313258.1| - 1.2e-58 197.2 0.0 3e-58 195.9 0.0 1.7 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|435851672|ref|YP_007313258.1| - 1.6e-33 116.5 1.6 9.3e-32 110.7 0.9 2.9 2 1 0 2 2 2 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|435851672|ref|YP_007313258.1| - 2.5e-05 23.9 0.3 0.062 12.7 0.2 2.5 2 0 0 2 2 2 2 Amidohydrolase family Disaggr_repeat PF06848.11 gi|435851673|ref|YP_007313259.1| - 1.3e-280 920.9 30.5 2.4e-94 314.1 3.8 3.7 4 0 0 4 4 4 3 Disaggregatase related repeat Disaggr_assoc PF08480.10 gi|435851673|ref|YP_007313259.1| - 1.9e-38 132.3 19.7 1.9e-38 132.3 19.7 2.7 2 0 0 2 2 2 1 Disaggregatase related PKD PF00801.20 gi|435851673|ref|YP_007313259.1| - 9.1e-35 118.3 28.5 4.7e-12 45.6 4.5 4.4 3 0 0 3 3 3 3 PKD domain Beta_helix PF13229.6 gi|435851673|ref|YP_007313259.1| - 6.5e-13 48.8 49.5 1.7e-09 37.8 23.8 3.6 1 1 1 2 2 2 2 Right handed beta helix region TGFb_propeptide PF00688.18 gi|435851673|ref|YP_007313259.1| - 1e-12 48.3 0.0 0.59 9.8 0.0 6.2 6 0 0 6 6 6 3 TGF-beta propeptide Y_Y_Y PF07495.13 gi|435851673|ref|YP_007313259.1| - 2.4e-08 33.8 1.2 0.0056 16.6 0.0 4.1 3 0 0 3 3 3 2 Y_Y_Y domain DUF5123 PF17161.4 gi|435851673|ref|YP_007313259.1| - 0.00052 21.1 6.4 0.00052 21.1 6.4 5.8 4 2 1 6 6 5 1 Domain of unknown function (DUF5123) DUF4625 PF15418.6 gi|435851673|ref|YP_007313259.1| - 0.0006 20.1 1.5 3.1 8.0 0.0 3.9 3 0 0 3 3 3 1 Domain of unknown function (DUF4625) He_PIG PF05345.12 gi|435851673|ref|YP_007313259.1| - 0.011 16.0 28.6 1.5 9.1 6.5 4.9 3 0 0 3 3 3 0 Putative Ig domain Ub-RnfH PF03658.14 gi|435851673|ref|YP_007313259.1| - 0.011 16.1 0.2 7.7 7.0 0.0 2.9 2 0 0 2 2 2 0 RnfH family Ubiquitin PKD_3 PF16820.5 gi|435851673|ref|YP_007313259.1| - 0.017 14.9 3.9 2 8.2 0.1 3.8 3 0 0 3 3 3 0 PKD-like domain Ras PF00071.22 gi|435851673|ref|YP_007313259.1| - 0.4 10.3 4.2 10 5.7 0.0 3.9 4 0 0 4 4 4 0 Ras family DUF5011 PF16403.5 gi|435851673|ref|YP_007313259.1| - 0.97 9.6 25.1 0.75 10.0 1.0 5.2 5 0 0 5 5 4 0 Domain of unknown function (DUF5011) Hemopexin PF00045.19 gi|435851673|ref|YP_007313259.1| - 1.1 9.3 4.9 9.6 6.2 0.1 3.5 3 0 0 3 3 3 0 Hemopexin MCH PF02289.16 gi|435851674|ref|YP_007313260.1| - 2.5e-134 447.4 0.0 2.8e-134 447.3 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Met_10 PF02475.16 gi|435851675|ref|YP_007313261.1| - 1.8e-64 217.2 0.0 2.4e-64 216.7 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|435851675|ref|YP_007313261.1| - 7.7e-10 38.5 1.1 1.4e-09 37.7 0.1 2.0 2 0 0 2 2 2 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_15 PF09445.10 gi|435851675|ref|YP_007313261.1| - 0.00028 20.5 0.0 0.00049 19.7 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 gi|435851675|ref|YP_007313261.1| - 0.0003 20.7 0.1 0.0046 16.9 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|435851675|ref|YP_007313261.1| - 0.0041 16.7 0.0 0.0084 15.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|435851675|ref|YP_007313261.1| - 0.013 14.9 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) V_cholerae_RfbT PF05575.11 gi|435851675|ref|YP_007313261.1| - 0.1 11.8 0.0 0.31 10.3 0.0 1.7 2 0 0 2 2 2 0 Vibrio cholerae RfbT protein CDC37_C PF08564.10 gi|435851675|ref|YP_007313261.1| - 0.11 12.7 0.1 0.21 11.8 0.1 1.4 1 0 0 1 1 1 0 Cdc37 C terminal domain HTH_5 PF01022.20 gi|435851676|ref|YP_007313262.1| - 2.7e-10 39.9 0.0 9.6e-10 38.2 0.0 2.0 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family V4R PF02830.18 gi|435851676|ref|YP_007313262.1| - 4.9e-09 36.1 3.6 1e-08 35.0 3.6 1.6 1 0 0 1 1 1 1 V4R domain MarR_2 PF12802.7 gi|435851676|ref|YP_007313262.1| - 1.7e-05 24.6 0.0 3.4e-05 23.6 0.0 1.5 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|435851676|ref|YP_007313262.1| - 0.00028 20.9 0.0 0.00051 20.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|435851676|ref|YP_007313262.1| - 0.0034 17.1 0.0 0.0062 16.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|435851676|ref|YP_007313262.1| - 0.068 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MetOD1 PF18546.1 gi|435851676|ref|YP_007313262.1| - 0.088 12.8 1.2 0.15 12.1 1.2 1.4 1 0 0 1 1 1 0 Metanogen output domain 1 HTH_36 PF13730.6 gi|435851676|ref|YP_007313262.1| - 0.1 12.6 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2110 PF09883.9 gi|435851677|ref|YP_007313263.1| - 8.7e-86 287.1 0.4 9.9e-86 286.9 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) LPD7 PF18821.1 gi|435851677|ref|YP_007313263.1| - 0.006 16.7 0.7 0.015 15.4 0.1 1.9 3 0 0 3 3 3 1 Large polyvalent protein-associated domain 7 HTH_27 PF13463.6 gi|435851678|ref|YP_007313264.1| - 4e-05 24.0 0.1 0.00011 22.6 0.1 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|435851678|ref|YP_007313264.1| - 0.01 15.8 1.0 0.018 15.0 0.4 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DUF4364 PF14277.6 gi|435851678|ref|YP_007313264.1| - 0.022 14.5 1.5 0.055 13.2 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) DUF2250 PF10007.9 gi|435851678|ref|YP_007313264.1| - 0.03 14.4 0.0 0.069 13.3 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) KORA PF16509.5 gi|435851678|ref|YP_007313264.1| - 0.088 13.1 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor MarR PF01047.22 gi|435851678|ref|YP_007313264.1| - 0.099 12.6 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|435851678|ref|YP_007313264.1| - 0.13 12.3 0.0 4.7 7.2 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain TRM PF02005.16 gi|435851679|ref|YP_007313265.1| - 4.8e-110 368.3 0.0 5.9e-110 368.0 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Metallophos_2 PF12850.7 gi|435851681|ref|YP_007313267.1| - 1.4e-17 64.4 0.0 2e-17 63.9 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|435851681|ref|YP_007313267.1| - 5.1e-16 59.8 0.2 1e-15 58.8 0.2 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|435851681|ref|YP_007313267.1| - 1.3e-06 27.9 1.1 0.00029 20.3 0.1 2.6 2 1 1 3 3 3 2 Metallophosphoesterase, calcineurin superfamily AIM24 PF01987.17 gi|435851682|ref|YP_007313268.1| - 6.3e-67 225.3 0.1 7.8e-67 225.0 0.1 1.1 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Aminotran_1_2 PF00155.21 gi|435851683|ref|YP_007313269.1| - 2.6e-27 95.9 0.0 3.8e-27 95.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II zf-like PF04071.12 gi|435851683|ref|YP_007313269.1| - 9.3e-24 83.2 5.3 2.5e-23 81.8 5.3 1.7 1 0 0 1 1 1 1 Cysteine-rich small domain Aminotran_1_2 PF00155.21 gi|435851684|ref|YP_007313270.1| - 1.8e-43 149.1 0.0 2.3e-43 148.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II zf-like PF04071.12 gi|435851684|ref|YP_007313270.1| - 3.3e-24 84.6 6.5 3.3e-24 84.6 6.5 1.9 2 0 0 2 2 2 1 Cysteine-rich small domain Aminotran_5 PF00266.19 gi|435851684|ref|YP_007313270.1| - 0.013 14.5 0.0 0.021 13.8 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V VacA PF02691.15 gi|435851684|ref|YP_007313270.1| - 0.13 10.1 0.0 0.18 9.6 0.0 1.1 1 0 0 1 1 1 0 Vacuolating cyotoxin CobD_Cbib PF03186.13 gi|435851685|ref|YP_007313271.1| - 5.2e-94 314.5 0.2 6.7e-94 314.2 0.2 1.1 1 0 0 1 1 1 1 CobD/Cbib protein BaxI_1 PF12811.7 gi|435851685|ref|YP_007313271.1| - 0.079 12.5 4.5 4.1 6.9 0.0 2.4 2 0 0 2 2 2 0 Bax inhibitor 1 like DUF4064 PF13273.6 gi|435851685|ref|YP_007313271.1| - 7 7.0 13.4 12 6.2 0.1 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF4064) PgpA PF04608.13 gi|435851686|ref|YP_007313272.1| - 1.2e-08 35.0 0.0 1.7e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A CobS PF02654.15 gi|435851687|ref|YP_007313273.1| - 1.3e-33 116.9 19.6 1.6e-33 116.7 19.6 1.1 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase Ferlin_C PF16165.5 gi|435851687|ref|YP_007313273.1| - 0.0057 16.6 0.1 0.0057 16.6 0.1 1.6 2 0 0 2 2 2 1 Ferlin C-terminus 7tm_1 PF00001.21 gi|435851687|ref|YP_007313273.1| - 0.078 12.3 1.2 0.2 11.0 1.2 1.6 1 0 0 1 1 1 0 7 transmembrane receptor (rhodopsin family) NTP_transf_3 PF12804.7 gi|435851688|ref|YP_007313274.1| - 4.7e-14 53.1 0.0 6.6e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|435851688|ref|YP_007313274.1| - 1.4e-07 31.5 0.0 3e-07 30.4 0.0 1.5 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|435851688|ref|YP_007313274.1| - 2.8e-06 27.4 0.0 6e-06 26.3 0.0 1.7 1 1 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.23 gi|435851688|ref|YP_007313274.1| - 0.00018 21.1 0.0 0.00025 20.7 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase CofC PF01983.16 gi|435851688|ref|YP_007313274.1| - 0.0087 15.3 0.0 0.014 14.6 0.0 1.4 1 0 0 1 1 1 1 Guanylyl transferase CofC like tRNA-synt_1 PF00133.22 gi|435851690|ref|YP_007313276.1| - 2.9e-196 653.3 1.9 3.7e-196 653.0 1.9 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|435851690|ref|YP_007313276.1| - 1e-36 126.2 0.2 2.8e-36 124.8 0.2 1.8 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|435851690|ref|YP_007313276.1| - 2.6e-24 85.7 3.8 3.1e-10 39.4 0.1 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|435851690|ref|YP_007313276.1| - 7.5e-08 32.1 0.0 3.5e-07 29.9 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|435851690|ref|YP_007313276.1| - 0.0004 19.9 0.0 0.0051 16.3 0.0 2.9 2 1 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|435851690|ref|YP_007313276.1| - 0.016 14.1 0.0 0.045 12.7 0.0 1.7 1 0 0 1 1 1 0 tRNA synthetases class I (K) IBR PF01485.21 gi|435851690|ref|YP_007313276.1| - 2.3 8.5 4.7 1.2 9.4 0.0 2.6 3 0 0 3 3 3 0 IBR domain, a half RING-finger domain MAF_flag10 PF01973.18 gi|435851691|ref|YP_007313277.1| - 8.6e-26 90.7 0.0 1.1e-25 90.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|435851691|ref|YP_007313277.1| - 0.09 12.8 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Thiamin pyrophosphokinase, catalytic domain DUF373 PF04123.13 gi|435851692|ref|YP_007313278.1| - 1.1e-119 399.8 10.1 1.3e-119 399.6 10.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) NusG_add PF18298.1 gi|435851692|ref|YP_007313278.1| - 0.099 12.9 0.1 0.26 11.5 0.1 1.7 1 1 0 1 1 1 0 NusG additional domain SpoOE-like PF09388.10 gi|435851692|ref|YP_007313278.1| - 0.1 12.5 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 Spo0E like sporulation regulatory protein AC_N PF16214.5 gi|435851692|ref|YP_007313278.1| - 0.37 9.9 4.8 0.48 9.5 4.8 1.2 1 0 0 1 1 1 0 Adenylyl cyclase N-terminal extracellular and transmembrane region PNP_UDP_1 PF01048.20 gi|435851693|ref|YP_007313279.1| - 2.4e-38 131.7 0.1 2.7e-38 131.5 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily PAC2 PF09754.9 gi|435851693|ref|YP_007313279.1| - 0.12 12.4 0.0 0.35 10.9 0.0 1.5 1 1 0 1 1 1 0 PAC2 family DEAD PF00270.29 gi|435851694|ref|YP_007313280.1| - 9.4e-21 74.4 0.0 1.9e-20 73.3 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|435851694|ref|YP_007313280.1| - 2.6e-14 53.5 0.0 1.4e-13 51.2 0.0 2.3 1 1 1 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|435851694|ref|YP_007313280.1| - 4.7e-10 39.7 0.0 8.7e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|435851694|ref|YP_007313280.1| - 0.058 12.1 0.0 0.082 11.6 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain DsbD PF02683.15 gi|435851695|ref|YP_007313281.1| - 1.9e-18 67.2 18.3 1.9e-18 67.2 18.3 1.7 2 0 0 2 2 2 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|435851695|ref|YP_007313281.1| - 7.3e-09 35.8 14.9 1.6e-08 34.7 14.9 1.6 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.6 gi|435851695|ref|YP_007313281.1| - 2.3e-07 30.8 0.1 4.1e-07 30.0 0.1 1.4 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin PF00085.20 gi|435851695|ref|YP_007313281.1| - 5.2e-05 23.2 0.0 8.6e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|435851695|ref|YP_007313281.1| - 0.017 15.0 0.1 0.036 13.9 0.0 1.5 1 1 0 1 1 1 0 F plasmid transfer operon protein FtsL PF04999.13 gi|435851695|ref|YP_007313281.1| - 0.44 10.6 1.8 2.8 8.0 0.1 2.6 2 0 0 2 2 2 0 Cell division protein FtsL DUF1634 PF07843.11 gi|435851696|ref|YP_007313282.1| - 0.011 15.7 0.3 0.017 15.2 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1634) AI-2E_transport PF01594.16 gi|435851696|ref|YP_007313282.1| - 0.02 14.0 0.5 0.023 13.9 0.5 1.1 1 0 0 1 1 1 0 AI-2E family transporter Insulin_TMD PF17870.1 gi|435851696|ref|YP_007313282.1| - 0.027 14.5 3.6 3.8 7.6 0.0 2.3 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment DUF3467 PF11950.8 gi|435851697|ref|YP_007313283.1| - 1.9e-15 56.8 0.0 2.4e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) LSM PF01423.22 gi|435851698|ref|YP_007313284.1| - 1.5e-17 63.0 0.6 1.6e-17 62.9 0.6 1.0 1 0 0 1 1 1 1 LSM domain RRF PF01765.19 gi|435851698|ref|YP_007313284.1| - 0.1 12.6 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Ribosome recycling factor B-block_TFIIIC PF04182.12 gi|435851699|ref|YP_007313285.1| - 4.7e-05 23.5 0.0 6.7e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.22 gi|435851699|ref|YP_007313285.1| - 0.0096 15.8 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|435851699|ref|YP_007313285.1| - 0.025 14.4 0.0 0.037 13.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|435851699|ref|YP_007313285.1| - 0.099 12.2 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MFS_1 PF07690.16 gi|435851700|ref|YP_007313286.1| - 6.4e-45 153.6 64.6 3.2e-30 105.2 33.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|435851700|ref|YP_007313286.1| - 9.2e-12 44.6 39.3 6.2e-10 38.5 15.3 3.2 2 1 1 3 3 3 3 Sugar (and other) transporter MFS_4 PF06779.14 gi|435851700|ref|YP_007313286.1| - 1.8e-05 24.2 20.2 2.7e-05 23.7 20.2 1.2 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MFS_3 PF05977.13 gi|435851700|ref|YP_007313286.1| - 0.064 11.6 10.0 0.093 11.1 10.0 1.1 1 0 0 1 1 1 0 Transmembrane secretion effector PUCC PF03209.15 gi|435851700|ref|YP_007313286.1| - 0.63 9.0 26.0 0.13 11.3 11.5 2.8 2 1 0 3 3 3 0 PUCC protein MarR PF01047.22 gi|435851701|ref|YP_007313287.1| - 1.6e-13 50.4 0.0 2.6e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|435851701|ref|YP_007313287.1| - 3.1e-10 40.4 0.0 5.2e-10 39.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|435851701|ref|YP_007313287.1| - 9.1e-09 35.1 0.0 1.3e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 MarR family RPA_C PF08784.11 gi|435851701|ref|YP_007313287.1| - 0.0001 22.9 0.0 0.00016 22.3 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal B-block_TFIIIC PF04182.12 gi|435851701|ref|YP_007313287.1| - 0.00031 20.9 0.1 0.00049 20.2 0.1 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_24 PF13412.6 gi|435851701|ref|YP_007313287.1| - 0.00041 19.8 0.0 0.00068 19.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|435851701|ref|YP_007313287.1| - 0.00049 20.0 0.0 0.00079 19.4 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|435851701|ref|YP_007313287.1| - 0.00075 19.7 0.0 0.0016 18.6 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.6 gi|435851701|ref|YP_007313287.1| - 0.0008 19.5 1.3 0.0012 19.0 0.1 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|435851701|ref|YP_007313287.1| - 0.0016 18.3 0.0 0.0025 17.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|435851701|ref|YP_007313287.1| - 0.0044 16.9 0.0 0.0079 16.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_54 PF18607.1 gi|435851701|ref|YP_007313287.1| - 0.0049 16.9 0.0 0.0085 16.1 0.0 1.4 1 0 0 1 1 1 1 ParA helix turn helix domain STN1_2 PF09170.10 gi|435851701|ref|YP_007313287.1| - 0.01 16.0 0.2 0.015 15.5 0.2 1.2 1 0 0 1 1 1 0 CST, Suppressor of cdc thirteen homolog, complex subunit STN1 DUF4754 PF15946.5 gi|435851701|ref|YP_007313287.1| - 0.04 14.2 0.0 0.065 13.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4754) Mga PF05043.13 gi|435851701|ref|YP_007313287.1| - 0.056 14.0 0.1 0.11 13.1 0.1 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_45 PF14947.6 gi|435851701|ref|YP_007313287.1| - 0.058 13.4 1.4 0.071 13.1 0.2 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_11 PF08279.12 gi|435851701|ref|YP_007313287.1| - 0.076 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 HTH domain HMG_CoA_synt_C PF08540.10 gi|435851701|ref|YP_007313287.1| - 0.085 12.5 1.4 4.5 6.8 0.2 2.2 1 1 1 2 2 2 0 Hydroxymethylglutaryl-coenzyme A synthase C terminal HTH_5 PF01022.20 gi|435851701|ref|YP_007313287.1| - 0.13 12.2 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Mur_ligase_C PF02875.21 gi|435851701|ref|YP_007313287.1| - 0.13 12.5 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 Mur ligase family, glutamate ligase domain HTH_IclR PF09339.10 gi|435851701|ref|YP_007313287.1| - 0.18 11.6 0.0 0.3 10.9 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HEAT_2 PF13646.6 gi|435851702|ref|YP_007313288.1| - 6.2e-13 48.9 0.5 0.018 15.4 0.0 5.1 1 1 4 5 5 5 5 HEAT repeats Adaptin_N PF01602.20 gi|435851702|ref|YP_007313288.1| - 0.0001 21.1 0.9 0.98 7.9 0.0 3.5 2 2 1 4 4 4 3 Adaptin N terminal region HEAT PF02985.22 gi|435851702|ref|YP_007313288.1| - 0.00024 21.1 1.2 0.75 10.2 0.1 4.6 5 0 0 5 5 5 1 HEAT repeat CLASP_N PF12348.8 gi|435851702|ref|YP_007313288.1| - 0.00057 19.5 0.9 0.55 9.8 0.1 3.2 3 0 0 3 3 3 2 CLASP N terminal HEAT_EZ PF13513.6 gi|435851702|ref|YP_007313288.1| - 0.0012 19.2 0.3 9.7 6.8 0.0 4.5 4 0 0 4 4 4 1 HEAT-like repeat Vac14_Fab1_bd PF12755.7 gi|435851702|ref|YP_007313288.1| - 0.0087 16.6 0.8 10 6.8 0.0 3.9 4 0 0 4 4 4 1 Vacuolar 14 Fab1-binding region DUF4065 PF13274.6 gi|435851702|ref|YP_007313288.1| - 0.05 14.5 0.8 0.39 11.6 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF4065) Cytochrom_C_asm PF01578.20 gi|435851703|ref|YP_007313289.1| - 4.7e-27 95.2 15.6 4.7e-27 95.2 15.6 2.0 2 0 0 2 2 2 1 Cytochrome C assembly protein DUF4231 PF14015.6 gi|435851703|ref|YP_007313289.1| - 9.5 6.8 10.7 1.4 9.5 0.5 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF4231) CcmB PF03379.13 gi|435851704|ref|YP_007313290.1| - 3.1e-36 124.9 18.0 3.8e-36 124.6 18.0 1.0 1 0 0 1 1 1 1 CcmB protein ABC2_membrane PF01061.24 gi|435851704|ref|YP_007313290.1| - 1.2e-12 47.7 11.1 2e-12 47.0 11.1 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|435851704|ref|YP_007313290.1| - 2.2e-08 33.6 16.6 3.7e-08 32.9 15.4 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|435851704|ref|YP_007313290.1| - 0.0048 16.9 13.6 0.0096 15.9 13.5 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|435851705|ref|YP_007313291.1| - 3.5e-32 111.8 0.0 5.3e-32 111.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435851705|ref|YP_007313291.1| - 1.1e-09 38.5 1.7 6.2e-05 23.0 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|435851705|ref|YP_007313291.1| - 0.00012 22.7 0.3 0.00021 21.9 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|435851705|ref|YP_007313291.1| - 0.00014 21.6 0.0 0.00049 19.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|435851705|ref|YP_007313291.1| - 0.00018 21.4 0.0 0.00045 20.1 0.0 1.4 1 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|435851705|ref|YP_007313291.1| - 0.00059 19.3 0.1 0.17 11.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|435851705|ref|YP_007313291.1| - 0.00061 19.5 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|435851705|ref|YP_007313291.1| - 0.0035 17.1 0.0 0.0044 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|435851705|ref|YP_007313291.1| - 0.0036 17.6 0.4 0.011 16.0 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|435851705|ref|YP_007313291.1| - 0.009 16.4 0.0 0.018 15.4 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|435851705|ref|YP_007313291.1| - 0.015 15.7 0.4 0.1 13.1 0.4 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|435851705|ref|YP_007313291.1| - 0.016 15.7 0.2 0.032 14.8 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|435851705|ref|YP_007313291.1| - 0.018 15.3 0.2 0.057 13.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|435851705|ref|YP_007313291.1| - 0.02 13.5 0.0 0.027 13.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|435851705|ref|YP_007313291.1| - 0.021 14.7 0.1 0.042 13.8 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|435851705|ref|YP_007313291.1| - 0.036 14.0 0.1 0.084 12.8 0.0 1.6 2 0 0 2 2 2 0 NACHT domain cobW PF02492.19 gi|435851705|ref|YP_007313291.1| - 0.086 12.4 0.4 0.33 10.5 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|435851705|ref|YP_007313291.1| - 0.1 12.2 0.1 0.51 9.9 0.0 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|435851705|ref|YP_007313291.1| - 0.1 12.5 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain ATPase_2 PF01637.18 gi|435851705|ref|YP_007313291.1| - 0.11 12.4 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|435851705|ref|YP_007313291.1| - 0.12 12.3 0.2 0.7 9.8 0.1 2.2 2 0 0 2 2 2 0 NTPase T2SSE PF00437.20 gi|435851705|ref|YP_007313291.1| - 0.12 11.4 0.7 0.36 9.8 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_25 PF13481.6 gi|435851705|ref|YP_007313291.1| - 0.12 11.9 0.0 0.4 10.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|435851705|ref|YP_007313291.1| - 0.19 11.7 0.8 1 9.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Oxidored_molyb PF00174.19 gi|435851706|ref|YP_007313292.1| - 1.1e-36 126.1 0.0 1.4e-36 125.7 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain HTH_45 PF14947.6 gi|435851707|ref|YP_007313293.1| - 6.2e-10 38.9 0.5 1e-09 38.2 0.5 1.4 2 0 0 2 2 2 1 Winged helix-turn-helix Mrr_N PF14338.6 gi|435851707|ref|YP_007313293.1| - 0.00096 19.2 0.0 0.0012 18.9 0.0 1.2 1 0 0 1 1 1 1 Mrr N-terminal domain DUF5457 PF17540.2 gi|435851707|ref|YP_007313293.1| - 0.019 15.1 0.4 0.054 13.6 0.2 1.7 1 1 1 2 2 2 0 Family of unknown function (DUF5457) HemN_C PF06969.16 gi|435851707|ref|YP_007313293.1| - 0.069 13.2 0.1 0.12 12.5 0.1 1.4 1 0 0 1 1 1 0 HemN C-terminal domain DUF576 PF04507.12 gi|435851708|ref|YP_007313294.1| - 0.12 11.8 2.0 0.68 9.3 0.0 2.4 1 1 1 2 2 2 0 Csa1 family Peripla_BP_2 PF01497.18 gi|435851709|ref|YP_007313295.1| - 1.8e-22 80.1 0.0 2.5e-22 79.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|435851710|ref|YP_007313296.1| - 3.6e-91 305.4 31.1 4.4e-91 305.1 31.1 1.0 1 0 0 1 1 1 1 FecCD transport family BofA PF07441.11 gi|435851710|ref|YP_007313296.1| - 0.064 13.5 1.3 0.064 13.5 1.3 5.0 5 1 0 5 5 5 0 SigmaK-factor processing regulatory protein BofA RhodobacterPufX PF11511.8 gi|435851710|ref|YP_007313296.1| - 2.3 7.9 10.4 0.16 11.6 0.4 3.2 3 0 0 3 3 3 0 Intrinsic membrane protein PufX ABC_tran PF00005.27 gi|435851711|ref|YP_007313297.1| - 6.8e-30 104.4 0.0 9.2e-30 103.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435851711|ref|YP_007313297.1| - 7.6e-10 39.1 1.7 0.00012 22.1 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|435851711|ref|YP_007313297.1| - 4e-06 26.8 0.3 0.00035 20.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|435851711|ref|YP_007313297.1| - 2.5e-05 24.9 0.0 5.6e-05 23.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|435851711|ref|YP_007313297.1| - 6.1e-05 22.7 0.0 0.00015 21.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|435851711|ref|YP_007313297.1| - 6.9e-05 22.4 0.4 0.0039 16.7 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|435851711|ref|YP_007313297.1| - 0.00015 22.2 0.0 0.00019 21.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|435851711|ref|YP_007313297.1| - 0.00058 19.8 0.0 0.0011 18.9 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|435851711|ref|YP_007313297.1| - 0.0012 19.1 1.4 0.016 15.4 1.4 2.3 1 1 0 1 1 1 1 AAA domain HSM3_N PF18795.1 gi|435851711|ref|YP_007313297.1| - 0.0034 16.9 0.6 0.0034 16.9 0.6 1.7 2 0 0 2 2 2 1 DNA mismatch repair protein HSM3, N terminal domain AAA_14 PF13173.6 gi|435851711|ref|YP_007313297.1| - 0.0045 17.0 0.1 0.088 12.8 0.0 2.3 2 1 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|435851711|ref|YP_007313297.1| - 0.0056 16.6 0.0 0.0078 16.2 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea Rad17 PF03215.15 gi|435851711|ref|YP_007313297.1| - 0.0096 15.9 0.5 0.076 12.9 0.1 2.1 2 0 0 2 2 2 1 Rad17 P-loop domain NB-ARC PF00931.22 gi|435851711|ref|YP_007313297.1| - 0.0097 15.1 0.1 0.2 10.8 0.0 2.4 2 1 0 2 2 2 1 NB-ARC domain AAA_5 PF07728.14 gi|435851711|ref|YP_007313297.1| - 0.01 15.8 0.0 0.71 9.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|435851711|ref|YP_007313297.1| - 0.016 14.6 0.0 0.035 13.5 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 gi|435851711|ref|YP_007313297.1| - 0.016 14.3 0.2 0.12 11.4 0.0 2.0 1 1 1 2 2 2 0 Type II/IV secretion system protein ABC_ATPase PF09818.9 gi|435851711|ref|YP_007313297.1| - 0.025 13.4 0.0 9.2 4.9 0.0 2.9 2 1 0 2 2 2 0 Predicted ATPase of the ABC class SRP54 PF00448.22 gi|435851711|ref|YP_007313297.1| - 0.041 13.5 0.0 0.091 12.4 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|435851711|ref|YP_007313297.1| - 0.043 14.2 0.9 0.39 11.0 0.9 2.4 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|435851711|ref|YP_007313297.1| - 0.059 13.1 0.0 0.12 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|435851711|ref|YP_007313297.1| - 0.082 12.6 0.1 0.43 10.3 0.0 2.0 2 1 0 2 2 2 0 IstB-like ATP binding protein TniB PF05621.11 gi|435851711|ref|YP_007313297.1| - 0.088 12.2 1.4 3.1 7.2 0.5 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA_24 PF13479.6 gi|435851711|ref|YP_007313297.1| - 0.097 12.4 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain OmpH PF03938.14 gi|435851711|ref|YP_007313297.1| - 0.12 12.7 0.0 0.19 12.1 0.0 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) AAA_13 PF13166.6 gi|435851711|ref|YP_007313297.1| - 0.13 10.9 0.0 7.9 5.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|435851711|ref|YP_007313297.1| - 0.15 12.3 0.0 1.6 9.1 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.29 gi|435851711|ref|YP_007313297.1| - 0.17 12.3 0.8 0.77 10.2 0.8 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Methyltransf_25 PF13649.6 gi|435851712|ref|YP_007313298.1| - 4.6e-13 49.7 0.0 8.5e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|435851712|ref|YP_007313298.1| - 1.5e-09 38.5 0.0 1.2e-08 35.6 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|435851712|ref|YP_007313298.1| - 9.8e-08 32.0 0.0 1.6e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|435851712|ref|YP_007313298.1| - 2.1e-07 30.3 0.0 3.4e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.6 gi|435851712|ref|YP_007313298.1| - 5.1e-07 29.6 0.0 8.5e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435851712|ref|YP_007313298.1| - 7.8e-07 29.7 0.0 1.5e-06 28.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|435851712|ref|YP_007313298.1| - 9.3e-07 28.3 0.0 1.3e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G MTS PF05175.14 gi|435851712|ref|YP_007313298.1| - 4.8e-06 26.2 0.0 8.3e-06 25.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|435851712|ref|YP_007313298.1| - 1.5e-05 24.8 0.0 2.5e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.14 gi|435851712|ref|YP_007313298.1| - 0.00028 20.4 0.0 0.00044 19.7 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.18 gi|435851712|ref|YP_007313298.1| - 0.0007 19.0 0.0 0.0014 18.0 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family DREV PF05219.12 gi|435851712|ref|YP_007313298.1| - 0.00071 18.8 0.0 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase CMAS PF02353.20 gi|435851712|ref|YP_007313298.1| - 0.001 18.4 0.0 0.0022 17.4 0.0 1.5 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|435851712|ref|YP_007313298.1| - 0.002 17.6 0.2 0.0041 16.6 0.0 1.5 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.16 gi|435851712|ref|YP_007313298.1| - 0.0026 17.5 0.0 0.0043 16.8 0.0 1.6 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.7 gi|435851712|ref|YP_007313298.1| - 0.0039 17.1 0.1 0.011 15.7 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|435851712|ref|YP_007313298.1| - 0.0045 16.6 0.0 0.009 15.7 0.0 1.5 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|435851712|ref|YP_007313298.1| - 0.0046 16.5 0.0 0.007 16.0 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.17 gi|435851712|ref|YP_007313298.1| - 0.0047 16.4 0.0 0.012 15.1 0.0 1.6 1 0 0 1 1 1 1 Putative methyltransferase tRNA_U5-meth_tr PF05958.11 gi|435851712|ref|YP_007313298.1| - 0.012 14.6 0.0 0.018 14.0 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_16 PF10294.9 gi|435851712|ref|YP_007313298.1| - 0.014 15.2 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase DUF938 PF06080.12 gi|435851712|ref|YP_007313298.1| - 0.031 14.0 0.0 0.044 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) MetW PF07021.12 gi|435851712|ref|YP_007313298.1| - 0.094 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW FmdE PF02663.14 gi|435851713|ref|YP_007313299.1| - 4e-42 143.4 0.1 6.5e-42 142.7 0.1 1.3 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|435851713|ref|YP_007313299.1| - 0.00016 21.6 2.6 0.00064 19.6 3.0 1.8 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.22 gi|435851713|ref|YP_007313299.1| - 0.035 14.3 1.1 0.072 13.3 1.1 1.6 1 0 0 1 1 1 0 LIM domain OrfB_Zn_ribbon PF07282.11 gi|435851713|ref|YP_007313299.1| - 0.13 12.2 0.3 0.13 12.2 0.3 2.4 3 0 0 3 3 3 0 Putative transposase DNA-binding domain Fer4 PF00037.27 gi|435851714|ref|YP_007313300.1| - 2.3e-17 62.0 15.0 4.1e-09 35.9 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|435851714|ref|YP_007313300.1| - 9.6e-15 53.9 16.9 1.5e-07 31.2 2.8 2.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|435851714|ref|YP_007313300.1| - 2.3e-11 44.5 7.4 3e-05 24.9 0.4 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|435851714|ref|YP_007313300.1| - 5.2e-11 43.0 10.1 8.6e-11 42.3 10.1 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435851714|ref|YP_007313300.1| - 5.4e-11 42.1 12.7 2.4e-05 24.5 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|435851714|ref|YP_007313300.1| - 7.3e-11 41.5 15.2 2.5e-05 24.1 4.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435851714|ref|YP_007313300.1| - 5.1e-10 39.3 13.4 1.2e-08 34.9 13.9 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435851714|ref|YP_007313300.1| - 7.3e-10 38.9 10.0 1.1e-09 38.2 10.0 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435851714|ref|YP_007313300.1| - 1.9e-09 37.5 12.7 2.7e-09 37.0 12.7 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|435851714|ref|YP_007313300.1| - 2.4e-06 28.3 9.4 0.0045 17.8 1.9 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435851714|ref|YP_007313300.1| - 7e-06 26.6 18.0 0.0063 17.4 4.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|435851714|ref|YP_007313300.1| - 2.6e-05 24.6 13.4 0.0069 16.8 2.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|435851714|ref|YP_007313300.1| - 3.4e-05 24.5 18.0 0.00036 21.2 3.6 2.8 2 2 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|435851714|ref|YP_007313300.1| - 4.4e-05 23.9 12.6 0.0097 16.4 1.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|435851714|ref|YP_007313300.1| - 5.4e-05 23.6 15.3 0.0091 16.5 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_11 PF13247.6 gi|435851714|ref|YP_007313300.1| - 0.0029 17.7 3.8 0.0033 17.5 3.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|435851714|ref|YP_007313300.1| - 0.0071 16.5 14.6 0.025 14.8 4.1 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain zinc_ribbon_16 PF17034.5 gi|435851714|ref|YP_007313300.1| - 0.0083 16.3 0.5 0.0083 16.3 0.5 2.0 1 1 1 2 2 2 1 Zinc-ribbon like family Fer4_19 PF06902.11 gi|435851714|ref|YP_007313300.1| - 0.017 15.2 3.6 0.021 14.9 3.6 1.2 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster HCV_NS2 PF01538.18 gi|435851714|ref|YP_007313300.1| - 0.046 13.4 8.9 0.42 10.2 1.6 2.0 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS2 DUF1801 PF08818.11 gi|435851715|ref|YP_007313301.1| - 5.1e-15 55.8 0.0 6e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DU1801) Fer4_13 PF13370.6 gi|435851716|ref|YP_007313302.1| - 5.1e-20 71.8 4.7 6e-20 71.5 4.7 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|435851716|ref|YP_007313302.1| - 3.3e-07 31.0 3.9 4.9e-07 30.4 3.9 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|435851716|ref|YP_007313302.1| - 2.3e-05 24.4 0.5 0.0033 17.5 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|435851716|ref|YP_007313302.1| - 0.0018 18.0 8.0 0.032 14.1 1.3 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435851716|ref|YP_007313302.1| - 0.0096 16.5 2.5 0.028 15.0 2.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435851716|ref|YP_007313302.1| - 0.032 14.4 1.2 0.094 12.9 1.5 1.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435851716|ref|YP_007313302.1| - 0.033 14.3 1.0 0.033 14.3 1.0 2.1 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435851716|ref|YP_007313302.1| - 0.058 13.5 2.3 0.24 11.5 2.7 1.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|435851716|ref|YP_007313302.1| - 0.4 10.9 4.5 0.5 10.6 0.9 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435851716|ref|YP_007313302.1| - 3.5 8.8 6.4 40 5.5 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain B12-binding PF02310.19 gi|435851717|ref|YP_007313303.1| - 1.3e-19 70.4 0.5 1.9e-19 69.8 0.5 1.2 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|435851717|ref|YP_007313303.1| - 3.3e-10 40.2 0.7 1.4e-09 38.3 0.2 2.0 2 0 0 2 2 2 1 B12 binding domain Apo-CIII PF05778.12 gi|435851717|ref|YP_007313303.1| - 0.092 12.4 0.8 0.16 11.6 0.0 1.8 2 0 0 2 2 2 0 Apolipoprotein CIII (Apo-CIII) PMT2_N PF17987.1 gi|435851717|ref|YP_007313303.1| - 0.18 12.0 1.0 0.73 10.0 0.1 2.2 1 1 2 3 3 3 0 Phosphoethanolamine N-methyltransferase 2 N-terminal MarR_2 PF12802.7 gi|435851718|ref|YP_007313304.1| - 5.4e-09 35.8 0.0 8.7e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|435851718|ref|YP_007313304.1| - 1.2e-08 34.7 0.0 2.5e-08 33.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|435851718|ref|YP_007313304.1| - 1.3e-05 25.6 0.0 2.6e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|435851718|ref|YP_007313304.1| - 0.00031 20.9 0.2 0.00084 19.5 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|435851718|ref|YP_007313304.1| - 0.0076 15.8 0.0 0.02 14.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|435851718|ref|YP_007313304.1| - 0.017 15.0 0.0 0.038 13.9 0.0 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|435851718|ref|YP_007313304.1| - 0.06 13.7 0.2 0.12 12.7 0.2 1.6 1 1 0 1 1 1 0 Penicillinase repressor FlgN PF05130.12 gi|435851718|ref|YP_007313304.1| - 0.077 13.5 1.3 1.2 9.6 0.7 2.2 2 1 0 2 2 2 0 FlgN protein Lon_C PF05362.13 gi|435851719|ref|YP_007313305.1| - 4.2e-87 291.0 1.6 8.2e-87 290.0 1.6 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA PF00004.29 gi|435851719|ref|YP_007313305.1| - 2.7e-21 76.4 0.0 1.7e-20 73.8 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ChlI PF13541.6 gi|435851719|ref|YP_007313305.1| - 1.2e-09 38.0 0.1 2.2e-09 37.2 0.1 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase LON_substr_bdg PF02190.16 gi|435851719|ref|YP_007313305.1| - 2.2e-09 37.5 0.0 5.4e-09 36.2 0.0 1.6 1 0 0 1 1 1 1 ATP-dependent protease La (LON) substrate-binding domain AAA_5 PF07728.14 gi|435851719|ref|YP_007313305.1| - 7.2e-09 35.8 0.0 4.2e-08 33.3 0.0 2.3 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|435851719|ref|YP_007313305.1| - 1e-06 29.3 0.0 3.7e-05 24.2 0.1 3.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|435851719|ref|YP_007313305.1| - 1.9e-05 25.0 0.2 0.00025 21.3 0.0 2.6 2 1 0 2 2 1 1 AAA domain AAA_2 PF07724.14 gi|435851719|ref|YP_007313305.1| - 0.00011 22.3 0.0 0.00039 20.6 0.0 1.9 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|435851719|ref|YP_007313305.1| - 0.00016 21.4 0.0 0.00085 19.1 0.0 2.2 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|435851719|ref|YP_007313305.1| - 0.00025 20.8 0.0 0.0006 19.6 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein Rad17 PF03215.15 gi|435851719|ref|YP_007313305.1| - 0.0014 18.5 0.0 0.0046 16.9 0.0 1.8 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_PrkA PF08298.11 gi|435851719|ref|YP_007313305.1| - 0.0015 17.6 0.0 0.0028 16.6 0.0 1.4 1 0 0 1 1 1 1 PrkA AAA domain AAA_23 PF13476.6 gi|435851719|ref|YP_007313305.1| - 0.0024 18.4 2.9 1.1 9.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|435851719|ref|YP_007313305.1| - 0.0062 16.7 0.1 0.015 15.5 0.1 1.6 1 0 0 1 1 1 1 AAA domain Birna_VP4 PF01768.16 gi|435851719|ref|YP_007313305.1| - 0.0066 16.3 0.1 0.016 15.1 0.1 1.6 1 0 0 1 1 1 1 Birnavirus VP4 protein NTPase_1 PF03266.15 gi|435851719|ref|YP_007313305.1| - 0.012 15.5 1.4 0.097 12.6 0.1 3.1 3 1 1 4 4 2 0 NTPase Viral_helicase1 PF01443.18 gi|435851719|ref|YP_007313305.1| - 0.022 14.5 0.0 0.038 13.7 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_3 PF07726.11 gi|435851719|ref|YP_007313305.1| - 0.023 14.6 0.0 0.077 12.9 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|435851719|ref|YP_007313305.1| - 0.028 14.1 0.1 0.086 12.6 0.2 1.8 2 0 0 2 2 1 0 AAA domain TsaE PF02367.17 gi|435851719|ref|YP_007313305.1| - 0.028 14.4 0.0 0.075 13.0 0.0 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE TIP49 PF06068.13 gi|435851719|ref|YP_007313305.1| - 0.032 13.4 0.1 0.032 13.4 0.1 2.2 3 0 0 3 3 3 0 TIP49 P-loop domain RNA_helicase PF00910.22 gi|435851719|ref|YP_007313305.1| - 0.034 14.5 0.0 0.1 13.0 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.6 gi|435851719|ref|YP_007313305.1| - 0.039 14.0 0.0 0.19 11.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF4899 PF16240.5 gi|435851719|ref|YP_007313305.1| - 0.04 13.1 4.5 2.9 7.0 0.2 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4899) Parvo_NS1 PF01057.17 gi|435851719|ref|YP_007313305.1| - 0.043 12.9 0.0 0.092 11.8 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_18 PF13238.6 gi|435851719|ref|YP_007313305.1| - 0.057 14.0 0.1 0.057 14.0 0.1 3.3 4 1 0 4 4 3 0 AAA domain AAA_7 PF12775.7 gi|435851719|ref|YP_007313305.1| - 0.064 12.8 0.0 0.14 11.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF815 PF05673.13 gi|435851719|ref|YP_007313305.1| - 0.073 12.2 0.8 0.25 10.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) NACHT PF05729.12 gi|435851719|ref|YP_007313305.1| - 0.097 12.6 0.0 0.83 9.6 0.0 2.3 2 0 0 2 2 2 0 NACHT domain AAA_28 PF13521.6 gi|435851719|ref|YP_007313305.1| - 0.17 12.1 0.1 0.43 10.8 0.1 1.7 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|435851719|ref|YP_007313305.1| - 0.19 10.9 1.3 0.25 10.5 0.1 1.8 2 0 0 2 2 2 0 NB-ARC domain CbiA PF01656.23 gi|435851719|ref|YP_007313305.1| - 0.63 10.1 3.1 2.3 8.3 0.1 2.8 3 0 0 3 3 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_11 PF13086.6 gi|435851719|ref|YP_007313305.1| - 7 6.4 7.3 0.47 10.2 0.2 2.1 1 1 0 2 2 2 0 AAA domain GGACT PF06094.12 gi|435851720|ref|YP_007313306.1| - 1.2e-15 58.2 0.0 2.3e-15 57.3 0.0 1.5 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like Radical_SAM PF04055.21 gi|435851720|ref|YP_007313306.1| - 7.4e-14 52.5 0.0 1e-13 52.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|435851720|ref|YP_007313306.1| - 1.5e-08 34.8 0.0 3.5e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain SIP1 PF04938.12 gi|435851720|ref|YP_007313306.1| - 0.16 11.7 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Survival motor neuron (SMN) interacting protein 1 (SIP1) FAD_binding_3 PF01494.19 gi|435851721|ref|YP_007313307.1| - 1e-10 41.5 2.2 1.7e-08 34.1 0.4 3.0 2 1 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|435851721|ref|YP_007313307.1| - 3.4e-10 40.0 3.0 7.6e-06 25.7 0.2 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|435851721|ref|YP_007313307.1| - 4.4e-09 35.9 0.0 6.5e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|435851721|ref|YP_007313307.1| - 6.6e-09 35.6 0.2 1.3e-08 34.6 0.2 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|435851721|ref|YP_007313307.1| - 1.2e-07 30.8 0.2 1.8e-07 30.2 0.2 1.3 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|435851721|ref|YP_007313307.1| - 2.7e-07 30.7 0.0 1.4e-06 28.4 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|435851721|ref|YP_007313307.1| - 9e-07 28.4 0.0 1.4e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|435851721|ref|YP_007313307.1| - 1.1e-06 28.1 0.6 1.9e-06 27.3 0.6 1.4 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|435851721|ref|YP_007313307.1| - 7.4e-06 25.3 0.7 0.006 15.7 0.2 2.5 2 1 0 2 2 2 2 Lycopene cyclase protein Thi4 PF01946.17 gi|435851721|ref|YP_007313307.1| - 3.7e-05 23.1 0.0 7.3e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|435851721|ref|YP_007313307.1| - 0.0031 16.8 0.1 0.012 14.9 0.1 1.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|435851721|ref|YP_007313307.1| - 0.0065 15.4 0.3 0.026 13.4 0.0 1.9 2 1 0 2 2 2 1 Tryptophan halogenase 3HCDH_N PF02737.18 gi|435851721|ref|YP_007313307.1| - 0.01 15.8 0.3 0.022 14.6 0.3 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|435851721|ref|YP_007313307.1| - 0.015 14.6 0.1 0.031 13.6 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|435851721|ref|YP_007313307.1| - 0.065 13.8 0.0 0.26 11.9 0.0 2.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|435851721|ref|YP_007313307.1| - 0.12 11.9 0.1 0.24 11.0 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.18 gi|435851721|ref|YP_007313307.1| - 0.14 12.5 0.0 0.27 11.5 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain F_actin_cap_B PF01115.17 gi|435851722|ref|YP_007313308.1| - 0.037 13.7 0.1 0.052 13.2 0.1 1.1 1 0 0 1 1 1 0 F-actin capping protein, beta subunit DUF3410 PF11890.8 gi|435851722|ref|YP_007313308.1| - 0.18 11.6 5.1 1.7 8.5 0.5 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF3410) DivIC PF04977.15 gi|435851722|ref|YP_007313308.1| - 0.99 9.2 5.6 0.31 10.9 1.9 2.0 2 0 0 2 2 2 0 Septum formation initiator Methyltransf_12 PF08242.12 gi|435851723|ref|YP_007313309.1| - 3.1e-15 56.7 0.0 6.4e-15 55.7 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|435851723|ref|YP_007313309.1| - 1.5e-12 48.1 0.0 2.9e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435851723|ref|YP_007313309.1| - 6.6e-09 36.3 0.0 1.1e-08 35.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|435851723|ref|YP_007313309.1| - 5.4e-07 29.5 0.0 2.5e-06 27.4 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|435851723|ref|YP_007313309.1| - 1.3e-05 25.1 0.0 1.4e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|435851723|ref|YP_007313309.1| - 6e-05 22.5 0.0 7.2e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_2 PF00891.18 gi|435851723|ref|YP_007313309.1| - 0.00029 20.2 0.0 0.00037 19.8 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_PK PF05891.12 gi|435851723|ref|YP_007313309.1| - 0.016 14.7 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase MTS PF05175.14 gi|435851723|ref|YP_007313309.1| - 0.043 13.4 0.0 0.065 12.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain ResIII PF04851.15 gi|435851723|ref|YP_007313309.1| - 0.057 13.4 0.0 0.082 12.9 0.0 1.3 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Methyltransf_5 PF01795.19 gi|435851723|ref|YP_007313309.1| - 0.076 12.5 0.0 0.099 12.1 0.0 1.1 1 0 0 1 1 1 0 MraW methylase family zf-RING_5 PF14634.6 gi|435851723|ref|YP_007313309.1| - 0.18 11.8 1.0 0.53 10.3 1.1 1.7 1 1 0 1 1 1 0 zinc-RING finger domain zf-C2HC_2 PF13913.6 gi|435851724|ref|YP_007313310.1| - 0.19 11.7 0.3 0.19 11.7 0.3 2.3 3 0 0 3 3 3 0 zinc-finger of a C2HC-type Sgf11 PF08209.11 gi|435851724|ref|YP_007313310.1| - 0.31 10.6 3.8 1.6 8.3 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Fer4 PF00037.27 gi|435851725|ref|YP_007313311.1| - 5.6e-09 35.5 14.3 7.9e-06 25.5 1.7 2.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435851725|ref|YP_007313311.1| - 1.7e-06 28.1 26.7 5.2e-05 23.3 15.7 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435851725|ref|YP_007313311.1| - 1.4e-05 25.1 14.1 1.6e-05 24.9 14.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435851725|ref|YP_007313311.1| - 1.9e-05 25.1 15.1 4.3e-05 24.0 15.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435851725|ref|YP_007313311.1| - 0.00014 21.7 16.9 0.0017 18.3 3.7 2.5 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435851725|ref|YP_007313311.1| - 0.00076 19.5 14.5 0.00091 19.3 14.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435851725|ref|YP_007313311.1| - 0.0036 17.3 2.2 0.0036 17.3 2.2 2.6 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.7 gi|435851725|ref|YP_007313311.1| - 0.0042 17.5 3.8 0.0042 17.5 3.8 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|435851725|ref|YP_007313311.1| - 0.046 14.7 13.2 0.99 10.4 1.4 2.1 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|435851725|ref|YP_007313311.1| - 0.081 13.5 1.9 0.081 13.5 1.9 2.2 2 1 0 2 2 2 0 4Fe-4S dicluster domain NPP PF08384.10 gi|435851725|ref|YP_007313311.1| - 0.84 9.7 6.8 0.32 11.1 4.0 1.7 1 1 1 2 2 2 0 Pro-opiomelanocortin, N-terminal region Fer4_8 PF13183.6 gi|435851725|ref|YP_007313311.1| - 1.3 9.5 16.7 3.6e+02 1.7 16.7 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435851725|ref|YP_007313311.1| - 1.9 9.6 19.2 0.92 10.6 5.5 2.6 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|435851725|ref|YP_007313311.1| - 8.1 7.3 13.9 2.3e+02 2.6 13.9 2.2 1 1 0 1 1 1 0 4Fe-4S single cluster domain Yip1 PF04893.17 gi|435851726|ref|YP_007313312.1| - 0.14 11.8 9.9 1.3 8.7 9.9 2.1 1 1 0 1 1 1 0 Yip1 domain Guanylate_cyc PF00211.20 gi|435851727|ref|YP_007313313.1| - 4e-12 46.1 0.4 6.2e-12 45.5 0.4 1.2 1 0 0 1 1 1 1 Adenylate and Guanylate cyclase catalytic domain EDR1 PF14381.6 gi|435851727|ref|YP_007313313.1| - 0.012 15.3 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 Ethylene-responsive protein kinase Le-CTR1 Guanylate_cyc PF00211.20 gi|435851728|ref|YP_007313314.1| - 0.00043 20.0 0.0 0.00054 19.6 0.0 1.1 1 0 0 1 1 1 1 Adenylate and Guanylate cyclase catalytic domain Methyltransf_31 PF13847.6 gi|435851729|ref|YP_007313315.1| - 3.8e-24 85.2 0.0 8.1e-24 84.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435851729|ref|YP_007313315.1| - 1.2e-23 83.6 0.0 3.1e-23 82.2 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|435851729|ref|YP_007313315.1| - 7.7e-23 81.0 0.0 2.1e-22 79.6 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|435851729|ref|YP_007313315.1| - 8.3e-22 77.7 0.0 1.7e-21 76.7 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|435851729|ref|YP_007313315.1| - 4.9e-19 68.9 0.0 8.7e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|435851729|ref|YP_007313315.1| - 8.3e-19 68.0 0.0 1.8e-18 67.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|435851729|ref|YP_007313315.1| - 6.6e-09 35.4 0.0 9.2e-09 35.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|435851729|ref|YP_007313315.1| - 7.1e-08 32.2 0.0 1.4e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|435851729|ref|YP_007313315.1| - 1.7e-07 30.9 0.1 1.4e-06 27.9 0.1 2.2 1 1 0 1 1 1 1 Putative methyltransferase PCMT PF01135.19 gi|435851729|ref|YP_007313315.1| - 2.2e-07 30.8 0.0 2.9e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|435851729|ref|YP_007313315.1| - 8.2e-07 28.7 0.0 1.7e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_9 PF08003.11 gi|435851729|ref|YP_007313315.1| - 1.2e-05 24.5 0.0 1.8e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.15 gi|435851729|ref|YP_007313315.1| - 7.7e-05 22.6 0.0 0.00075 19.4 0.0 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase DREV PF05219.12 gi|435851729|ref|YP_007313315.1| - 0.00013 21.1 0.0 0.0002 20.5 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_29 PF03141.16 gi|435851729|ref|YP_007313315.1| - 0.00015 20.5 0.0 0.00022 19.9 0.0 1.2 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase NodS PF05401.11 gi|435851729|ref|YP_007313315.1| - 0.00029 20.5 0.0 0.00088 18.9 0.0 1.7 2 0 0 2 2 2 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|435851729|ref|YP_007313315.1| - 0.00063 19.8 0.0 0.001 19.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|435851729|ref|YP_007313315.1| - 0.0036 16.9 0.1 0.0079 15.8 0.1 1.6 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TehB PF03848.14 gi|435851729|ref|YP_007313315.1| - 0.0053 16.2 0.0 0.012 15.1 0.0 1.5 1 1 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_18 PF12847.7 gi|435851729|ref|YP_007313315.1| - 0.011 15.7 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain FmrO PF07091.11 gi|435851729|ref|YP_007313315.1| - 0.035 13.7 0.0 0.1 12.1 0.0 1.7 2 0 0 2 2 2 0 Ribosomal RNA methyltransferase (FmrO) HK PF02110.15 gi|435851730|ref|YP_007313316.1| - 3e-81 272.4 2.8 3.4e-81 272.3 2.8 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|435851730|ref|YP_007313316.1| - 6.3e-09 35.6 1.0 6.8e-09 35.5 1.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|435851730|ref|YP_007313316.1| - 5e-07 29.4 0.5 6.7e-07 29.0 0.5 1.1 1 0 0 1 1 1 1 Carbohydrate kinase DUF4411 PF14367.6 gi|435851730|ref|YP_007313316.1| - 0.068 13.1 0.5 0.97 9.3 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4411) TMP-TENI PF02581.17 gi|435851731|ref|YP_007313317.1| - 5.3e-62 208.4 3.1 6.4e-62 208.1 3.1 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|435851731|ref|YP_007313317.1| - 0.0048 16.3 3.1 0.0093 15.4 3.1 1.4 1 1 0 1 1 1 1 Nitronate monooxygenase Ribul_P_3_epim PF00834.19 gi|435851731|ref|YP_007313317.1| - 0.013 14.9 0.6 0.013 14.9 0.6 1.7 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family ThiF PF00899.21 gi|435851732|ref|YP_007313318.1| - 1e-65 221.5 0.0 1.3e-65 221.2 0.0 1.0 1 0 0 1 1 1 1 ThiF family EII-GUT PF03608.13 gi|435851732|ref|YP_007313318.1| - 0.16 11.9 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 PTS system enzyme II sorbitol-specific factor ELFV_dehydrog PF00208.21 gi|435851732|ref|YP_007313318.1| - 0.17 11.6 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SnoaL PF07366.12 gi|435851733|ref|YP_007313319.1| - 5.1e-35 120.0 0.0 5.7e-35 119.9 0.0 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|435851733|ref|YP_007313319.1| - 3.9e-10 40.3 0.1 4.5e-10 40.1 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|435851733|ref|YP_007313319.1| - 0.0041 17.5 0.1 0.0055 17.1 0.1 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) CPBP PF02517.16 gi|435851734|ref|YP_007313320.1| - 1.3e-17 64.0 3.8 1.3e-17 64.0 3.8 2.6 3 1 0 3 3 3 2 CPBP intramembrane metalloprotease DUF3303 PF11746.8 gi|435851736|ref|YP_007313322.1| - 6.5e-06 26.3 0.1 7.9e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3303) PAS_9 PF13426.7 gi|435851738|ref|YP_007313324.1| - 2.5e-43 146.6 9.4 3.4e-11 43.3 0.1 6.5 6 0 0 6 6 6 5 PAS domain PAS PF00989.25 gi|435851738|ref|YP_007313324.1| - 6.2e-43 145.4 1.3 1.1e-07 31.9 0.0 6.0 6 0 0 6 6 6 5 PAS fold PAS_3 PF08447.12 gi|435851738|ref|YP_007313324.1| - 4.1e-41 139.2 0.1 4.7e-15 55.7 0.1 5.4 5 0 0 5 5 5 4 PAS fold PAS_4 PF08448.10 gi|435851738|ref|YP_007313324.1| - 7.7e-30 103.4 0.0 0.00019 21.7 0.0 6.9 6 1 0 6 6 6 6 PAS fold PAS_8 PF13188.7 gi|435851738|ref|YP_007313324.1| - 3.7e-24 84.2 1.8 3.5e-07 30.1 0.0 5.4 6 0 0 6 6 6 4 PAS domain GAF_2 PF13185.6 gi|435851738|ref|YP_007313324.1| - 2e-10 41.1 0.0 4e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|435851738|ref|YP_007313324.1| - 2.6e-06 27.8 0.0 5e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|435851738|ref|YP_007313324.1| - 0.00037 20.6 2.6 3 8.0 0.0 5.2 4 3 0 4 4 4 2 PAS fold PAS_11 PF14598.6 gi|435851738|ref|YP_007313324.1| - 0.0026 17.9 0.0 0.39 10.8 0.0 2.7 2 0 0 2 2 2 1 PAS domain PAS_10 PF13596.6 gi|435851738|ref|YP_007313324.1| - 0.0087 16.6 0.1 0.87 10.2 0.0 3.4 2 1 1 3 3 3 1 PAS domain LPD15 PF18828.1 gi|435851738|ref|YP_007313324.1| - 0.021 14.7 0.1 11 6.0 0.0 2.8 2 0 0 2 2 2 0 Large polyvalent-protein-associated domain 15 B12-binding PF02310.19 gi|435851739|ref|YP_007313325.1| - 5.9e-17 61.8 0.1 1.2e-16 60.9 0.1 1.5 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|435851739|ref|YP_007313325.1| - 2.3e-16 60.0 0.0 5.9e-16 58.7 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain BMC PF00936.19 gi|435851739|ref|YP_007313325.1| - 0.089 12.8 1.6 5.7 7.0 0.0 3.1 3 1 0 3 3 3 0 BMC domain Cu2_monoox_C PF03712.15 gi|435851739|ref|YP_007313325.1| - 0.1 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Copper type II ascorbate-dependent monooxygenase, C-terminal domain DNA_pol3_gamma3 PF12169.8 gi|435851739|ref|YP_007313325.1| - 0.18 11.7 0.0 0.34 10.8 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III subunits gamma and tau domain III B12-binding PF02310.19 gi|435851740|ref|YP_007313326.1| - 3.3e-20 72.3 0.3 5.5e-20 71.6 0.3 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|435851740|ref|YP_007313326.1| - 6e-15 55.4 0.1 1.9e-14 53.9 0.1 1.9 2 0 0 2 2 2 1 B12 binding domain UPF0180 PF03698.13 gi|435851740|ref|YP_007313326.1| - 0.093 12.9 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) MtaB PF12176.8 gi|435851741|ref|YP_007313327.1| - 9.7e-229 759.8 5.8 1.1e-228 759.6 5.8 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit CN_hydrolase PF00795.22 gi|435851742|ref|YP_007313328.1| - 1.4e-43 149.1 0.0 1.7e-43 148.8 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF4440 PF14534.6 gi|435851744|ref|YP_007313330.1| - 8.7e-08 32.5 0.0 1.3e-07 32.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_4 PF13577.6 gi|435851744|ref|YP_007313330.1| - 0.022 14.9 0.1 0.077 13.1 0.1 1.7 1 1 0 1 1 1 0 SnoaL-like domain SnoaL_3 PF13474.6 gi|435851744|ref|YP_007313330.1| - 0.062 13.6 0.0 0.12 12.7 0.0 1.5 1 1 0 1 1 1 0 SnoaL-like domain DUF4157 PF13699.6 gi|435851745|ref|YP_007313331.1| - 9.6e-33 112.3 0.3 2.3e-32 111.0 0.3 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) DUF4157 PF13699.6 gi|435851746|ref|YP_007313332.1| - 2.3e-31 107.8 0.4 3.9e-31 107.1 0.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) DUF4157 PF13699.6 gi|435851747|ref|YP_007313333.1| - 5.1e-26 90.7 0.1 9.8e-26 89.8 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) UCR_14kD PF02271.16 gi|435851747|ref|YP_007313333.1| - 0.012 15.5 0.2 0.06 13.3 0.1 2.0 2 0 0 2 2 2 0 Ubiquinol-cytochrome C reductase complex 14kD subunit SecA_SW PF07516.13 gi|435851749|ref|YP_007313335.1| - 0.015 15.4 0.2 0.023 14.8 0.2 1.2 1 0 0 1 1 1 0 SecA Wing and Scaffold domain Bromo_TP PF07524.13 gi|435851749|ref|YP_007313335.1| - 0.12 12.4 0.1 0.4 10.7 0.1 1.9 1 0 0 1 1 1 0 Bromodomain associated Tail_P2_I PF09684.10 gi|435851750|ref|YP_007313336.1| - 5.5e-09 36.1 0.0 1.5e-08 34.7 0.0 1.7 1 1 0 1 1 1 1 Phage tail protein (Tail_P2_I) SBBP PF06739.11 gi|435851750|ref|YP_007313336.1| - 0.002 18.1 0.0 0.13 12.3 0.0 3.2 3 0 0 3 3 3 1 Beta-propeller repeat DEK_C PF08766.11 gi|435851750|ref|YP_007313336.1| - 0.029 14.3 0.0 0.58 10.1 0.0 2.6 2 0 0 2 2 2 0 DEK C terminal domain Baseplate_J PF04865.14 gi|435851751|ref|YP_007313337.1| - 5.2e-09 35.6 0.0 1.1e-05 24.7 0.0 2.2 2 0 0 2 2 2 2 Baseplate J-like protein DUF1917 PF08939.10 gi|435851751|ref|YP_007313337.1| - 0.011 15.6 0.0 0.018 15.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1917) Baseplate_J PF04865.14 gi|435851752|ref|YP_007313338.1| - 1.7e-17 63.4 0.1 7.6e-17 61.3 0.0 1.9 2 0 0 2 2 2 1 Baseplate J-like protein GPW_gp25 PF04965.14 gi|435851753|ref|YP_007313339.1| - 9.4e-23 79.8 0.0 1.1e-22 79.6 0.0 1.1 1 0 0 1 1 1 1 Gene 25-like lysozyme DUF2634 PF10934.8 gi|435851753|ref|YP_007313339.1| - 0.0069 16.5 0.0 0.0096 16.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2634) PAAR_motif PF05488.13 gi|435851754|ref|YP_007313340.1| - 7.7e-20 70.8 7.9 1.1e-10 41.5 1.8 2.6 1 1 2 3 3 3 3 PAAR motif DUF4150 PF13665.6 gi|435851754|ref|YP_007313340.1| - 0.0094 16.1 0.0 1.1 9.5 0.0 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF4150) Phage_base_V PF04717.12 gi|435851755|ref|YP_007313341.1| - 0.00013 21.9 0.0 0.00018 21.4 0.0 1.3 1 0 0 1 1 1 1 Type VI secretion system, phage-baseplate injector NusG_II PF07009.11 gi|435851755|ref|YP_007313341.1| - 0.011 15.9 0.7 0.019 15.2 0.7 1.3 1 0 0 1 1 1 0 NusG domain II DUF3540 PF12059.8 gi|435851755|ref|YP_007313341.1| - 0.013 15.3 0.0 2.6 7.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3540) BiPBP_C PF06832.12 gi|435851755|ref|YP_007313341.1| - 0.1 12.6 0.0 2.9 8.0 0.0 2.3 2 0 0 2 2 2 0 Penicillin-Binding Protein C-terminus Family Oxidored_molyb PF00174.19 gi|435851756|ref|YP_007313342.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase molybdopterin binding domain LysM PF01476.20 gi|435851757|ref|YP_007313343.1| - 3.8e-08 33.2 0.0 1e-07 31.9 0.0 1.8 1 0 0 1 1 1 1 LysM domain Phage_P2_GpU PF06995.11 gi|435851757|ref|YP_007313343.1| - 0.03 13.9 0.0 0.053 13.1 0.0 1.4 1 0 0 1 1 1 0 Phage P2 GpU DIX PF00778.17 gi|435851757|ref|YP_007313343.1| - 0.048 13.5 0.0 3.2 7.7 0.0 2.3 2 0 0 2 2 2 0 DIX domain Phage_T4_gp19 PF06841.12 gi|435851759|ref|YP_007313345.1| - 6.1e-45 152.4 0.4 6.9e-45 152.2 0.4 1.0 1 0 0 1 1 1 1 T4-like virus tail tube protein gp19 Phage_P2_GpE PF06528.12 gi|435851760|ref|YP_007313346.1| - 0.048 13.2 1.1 0.072 12.7 1.1 1.5 1 1 0 1 1 1 0 Phage P2 GpE zinc_ribbon_4 PF13717.6 gi|435851761|ref|YP_007313347.1| - 0.014 15.3 0.1 0.028 14.4 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF2072 PF09845.9 gi|435851761|ref|YP_007313347.1| - 0.072 13.3 0.1 0.12 12.7 0.1 1.3 1 0 0 1 1 1 0 Zn-ribbon containing protein Phage_T4_gp19 PF06841.12 gi|435851762|ref|YP_007313348.1| - 3.5e-45 153.1 0.0 3.9e-45 153.0 0.0 1.0 1 0 0 1 1 1 1 T4-like virus tail tube protein gp19 Phage_sheath_1 PF04984.14 gi|435851763|ref|YP_007313349.1| - 2.3e-22 79.6 0.0 3.7e-22 79.0 0.0 1.3 1 0 0 1 1 1 1 Phage tail sheath protein subtilisin-like domain Phage_sheath_1C PF17482.2 gi|435851763|ref|YP_007313349.1| - 3.3e-21 75.2 0.1 1.1e-20 73.5 0.0 1.8 2 0 0 2 2 2 1 Phage tail sheath C-terminal domain CarboxypepD_reg PF13620.6 gi|435851764|ref|YP_007313350.1| - 2.4e-13 50.1 0.6 8.2e-06 26.0 0.0 2.4 2 1 0 2 2 2 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|435851764|ref|YP_007313350.1| - 7.4e-12 45.1 1.9 6.5e-06 26.1 0.1 2.5 2 1 0 2 2 2 2 CarboxypepD_reg-like domain SdrD_B PF17210.3 gi|435851764|ref|YP_007313350.1| - 5.2e-05 23.4 2.6 5.3e-05 23.4 0.4 2.0 2 1 0 2 2 2 1 SdrD B-like domain DUF2012 PF09430.10 gi|435851764|ref|YP_007313350.1| - 0.00072 19.7 0.0 0.0015 18.6 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2012) Invasin_D3 PF09134.10 gi|435851764|ref|YP_007313350.1| - 0.0033 17.7 4.7 0.2 12.0 0.3 2.2 2 0 0 2 2 2 2 Invasin, domain 3 phage_tail_N PF08400.10 gi|435851764|ref|YP_007313350.1| - 0.049 13.6 1.1 15 5.6 0.1 2.8 2 1 0 2 2 2 0 Prophage tail fibre N-terminal HepII_C PF18675.1 gi|435851764|ref|YP_007313350.1| - 0.059 13.5 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 Heparinase II C-terminal domain SpaA PF17802.1 gi|435851764|ref|YP_007313350.1| - 0.068 13.5 3.3 0.34 11.3 1.0 2.2 2 0 0 2 2 2 0 Prealbumin-like fold domain DUF4255 PF14065.6 gi|435851765|ref|YP_007313351.1| - 2.7e-40 137.9 0.1 3.1e-40 137.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4255) AAA PF00004.29 gi|435851766|ref|YP_007313352.1| - 2.2e-36 125.2 0.2 6.2e-27 94.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.14 gi|435851766|ref|YP_007313352.1| - 2.1e-06 27.9 0.3 0.003 17.7 0.1 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) ABC_tran PF00005.27 gi|435851766|ref|YP_007313352.1| - 6.6e-06 26.7 0.0 0.018 15.5 0.0 2.9 3 0 0 3 3 2 2 ABC transporter AAA_16 PF13191.6 gi|435851766|ref|YP_007313352.1| - 1.4e-05 25.6 0.2 0.22 11.9 0.1 2.9 2 1 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.6 gi|435851766|ref|YP_007313352.1| - 9.2e-05 22.6 0.0 0.4 10.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|435851766|ref|YP_007313352.1| - 0.00011 21.8 0.0 0.086 12.3 0.0 2.4 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_8 PF12780.7 gi|435851766|ref|YP_007313352.1| - 0.00034 20.0 0.1 0.072 12.4 0.0 2.4 2 0 0 2 2 2 1 P-loop containing dynein motor region D4 AAA_14 PF13173.6 gi|435851766|ref|YP_007313352.1| - 0.00047 20.2 0.0 0.0024 17.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|435851766|ref|YP_007313352.1| - 0.0011 18.1 0.0 0.73 8.8 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein RuvB_N PF05496.12 gi|435851766|ref|YP_007313352.1| - 0.0012 18.6 0.0 0.012 15.3 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|435851766|ref|YP_007313352.1| - 0.0031 16.9 0.0 0.19 11.1 0.0 2.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|435851766|ref|YP_007313352.1| - 0.0033 17.2 0.0 2.8 7.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|435851766|ref|YP_007313352.1| - 0.0056 16.4 0.7 3.7 7.4 0.2 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain Rad17 PF03215.15 gi|435851766|ref|YP_007313352.1| - 0.0082 16.1 0.0 2.5 8.0 0.0 2.6 2 0 0 2 2 2 1 Rad17 P-loop domain Sigma54_activat PF00158.26 gi|435851766|ref|YP_007313352.1| - 0.011 15.4 0.0 0.53 10.0 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_23 PF13476.6 gi|435851766|ref|YP_007313352.1| - 0.011 16.2 5.8 3 8.3 0.0 4.0 4 0 0 4 4 4 0 AAA domain AAA_18 PF13238.6 gi|435851766|ref|YP_007313352.1| - 0.014 15.9 0.0 4.4 7.8 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|435851766|ref|YP_007313352.1| - 0.016 15.5 0.1 2.4 8.4 0.0 3.4 2 1 1 3 3 3 0 AAA domain Torsin PF06309.11 gi|435851766|ref|YP_007313352.1| - 0.028 14.5 0.1 0.8 9.8 0.0 3.0 3 0 0 3 3 3 0 Torsin Zot PF05707.12 gi|435851766|ref|YP_007313352.1| - 0.042 13.5 1.4 0.77 9.4 0.0 2.8 2 1 1 3 3 3 0 Zonular occludens toxin (Zot) DEAD PF00270.29 gi|435851766|ref|YP_007313352.1| - 0.042 13.6 0.6 2.9 7.6 0.1 3.1 2 1 1 3 3 3 0 DEAD/DEAH box helicase AAA_5 PF07728.14 gi|435851766|ref|YP_007313352.1| - 0.07 13.1 0.0 1.5 8.8 0.0 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|435851766|ref|YP_007313352.1| - 0.09 13.2 0.0 3.2 8.2 0.0 2.5 2 0 0 2 2 2 0 RNA helicase AAA_30 PF13604.6 gi|435851766|ref|YP_007313352.1| - 0.19 11.4 0.1 7.5 6.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain PEP-utilizers_C PF02896.18 gi|435851768|ref|YP_007313354.1| - 2.6e-93 312.3 0.1 5e-93 311.4 0.1 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.19 gi|435851768|ref|YP_007313354.1| - 8.3e-66 222.5 0.0 1.8e-38 132.6 0.0 3.3 1 1 2 3 3 3 3 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|435851768|ref|YP_007313354.1| - 1.4e-28 98.4 1.9 1.4e-28 98.4 1.9 2.5 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain polyprenyl_synt PF00348.17 gi|435851769|ref|YP_007313355.1| - 1.5e-72 243.8 0.0 1.9e-72 243.4 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase ANAPC3 PF12895.7 gi|435851769|ref|YP_007313355.1| - 0.017 15.3 0.0 0.063 13.5 0.0 1.9 2 0 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 Lactamase_B_2 PF12706.7 gi|435851770|ref|YP_007313356.1| - 7.5e-09 35.4 2.0 1.5e-08 34.4 0.2 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|435851770|ref|YP_007313356.1| - 8.8e-09 35.2 0.7 3.4e-08 33.3 0.1 2.2 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|435851770|ref|YP_007313356.1| - 1.3e-07 31.8 1.9 4.4e-07 30.1 1.9 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DRTGG PF07085.12 gi|435851770|ref|YP_007313356.1| - 0.096 12.5 0.1 3.6 7.4 0.0 2.6 2 0 0 2 2 2 0 DRTGG domain FMN_dh PF01070.18 gi|435851771|ref|YP_007313357.1| - 3.1e-29 102.1 2.5 5.8e-19 68.3 2.6 2.1 1 1 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.15 gi|435851771|ref|YP_007313357.1| - 2.6e-05 23.8 0.4 0.00021 20.8 0.2 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase IMPDH PF00478.25 gi|435851771|ref|YP_007313357.1| - 0.00033 19.8 7.6 0.00097 18.2 0.3 3.2 4 0 0 4 4 4 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|435851771|ref|YP_007313357.1| - 0.00093 18.5 2.5 0.0041 16.4 0.1 2.3 2 1 0 2 2 2 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.17 gi|435851771|ref|YP_007313357.1| - 0.02 14.0 2.0 0.048 12.8 2.0 1.7 1 1 0 1 1 1 0 Conserved region in glutamate synthase AA_kinase PF00696.28 gi|435851772|ref|YP_007313358.1| - 1.3e-35 123.2 0.7 1.4e-35 123.0 0.7 1.0 1 0 0 1 1 1 1 Amino acid kinase family GHMP_kinases_C PF08544.13 gi|435851773|ref|YP_007313359.1| - 4.8e-16 58.9 0.3 4.8e-16 58.9 0.3 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|435851773|ref|YP_007313359.1| - 2.3e-15 56.6 0.7 6.4e-15 55.1 0.7 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.9 gi|435851773|ref|YP_007313359.1| - 0.0023 17.4 0.0 0.0088 15.6 0.0 2.0 2 0 0 2 2 2 1 Galactokinase galactose-binding signature Peptidase_M66 PF10462.9 gi|435851773|ref|YP_007313359.1| - 0.3 10.0 0.8 0.52 9.2 0.6 1.4 1 1 0 1 1 1 0 Peptidase M66 Memo PF01875.17 gi|435851774|ref|YP_007313360.1| - 1.4e-81 273.6 0.0 1.6e-81 273.4 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LeuA_dimer PF08502.10 gi|435851774|ref|YP_007313360.1| - 0.018 15.0 0.1 0.026 14.4 0.1 1.3 1 0 0 1 1 1 0 LeuA allosteric (dimerisation) domain LigB PF02900.18 gi|435851774|ref|YP_007313360.1| - 0.049 12.7 0.0 0.088 11.9 0.0 1.5 1 1 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.20 gi|435851775|ref|YP_007313361.1| - 5.6e-26 91.1 1.2 3.1e-15 56.0 0.8 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Peripla_BP_4 PF13407.6 gi|435851775|ref|YP_007313361.1| - 0.015 14.8 0.7 0.031 13.9 0.7 1.5 1 0 0 1 1 1 0 Periplasmic binding protein domain RNA_pol_Rpb6 PF01192.22 gi|435851776|ref|YP_007313362.1| - 1.4e-10 40.9 0.0 1.7e-10 40.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 NifT PF06988.11 gi|435851776|ref|YP_007313362.1| - 0.052 13.3 0.0 0.057 13.2 0.0 1.2 1 0 0 1 1 1 0 NifT/FixU protein RNA_pol_N PF01194.17 gi|435851777|ref|YP_007313363.1| - 3.1e-29 101.0 0.3 3.4e-29 100.9 0.3 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.19 gi|435851778|ref|YP_007313364.1| - 3.9e-33 114.6 0.8 4.4e-33 114.4 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 AlaDh_PNT_C PF01262.21 gi|435851778|ref|YP_007313364.1| - 0.047 13.0 0.0 0.058 12.7 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Ribosomal_L13 PF00572.18 gi|435851779|ref|YP_007313365.1| - 2.4e-12 47.2 0.1 2.8e-10 40.5 0.1 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 DUF3659 PF12396.8 gi|435851779|ref|YP_007313365.1| - 0.056 13.4 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3659) Ribosomal_L18 PF17135.4 gi|435851780|ref|YP_007313366.1| - 5.9e-10 38.8 0.0 6.6e-10 38.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|435851780|ref|YP_007313366.1| - 1.5e-07 32.2 0.3 3.2e-07 31.1 0.3 1.6 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DUF2240 PF09999.9 gi|435851781|ref|YP_007313367.1| - 5.9e-45 152.4 0.0 6.7e-45 152.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) 2-Hacid_dh_C PF02826.19 gi|435851783|ref|YP_007313369.1| - 1.8e-64 216.4 0.1 2.9e-64 215.7 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|435851783|ref|YP_007313369.1| - 1.4e-38 131.5 1.0 1.4e-38 131.5 1.0 2.2 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.12 gi|435851783|ref|YP_007313369.1| - 3.7e-06 26.6 0.3 1e-05 25.2 0.1 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|435851783|ref|YP_007313369.1| - 1.4e-05 25.3 0.2 4.3e-05 23.7 0.2 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ACT PF01842.25 gi|435851783|ref|YP_007313369.1| - 0.00023 20.8 0.0 0.00072 19.3 0.0 1.9 1 0 0 1 1 1 1 ACT domain F420_oxidored PF03807.17 gi|435851783|ref|YP_007313369.1| - 0.006 17.1 0.1 0.03 14.9 0.1 2.2 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_C PF03720.15 gi|435851783|ref|YP_007313369.1| - 0.014 15.8 0.1 0.06 13.8 0.0 2.0 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain tRNA-synt_2c PF01411.19 gi|435851784|ref|YP_007313370.1| - 1.7e-13 50.0 0.0 2.4e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|435851784|ref|YP_007313370.1| - 5e-13 48.9 0.3 8.6e-13 48.2 0.3 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DUF4964 PF16334.5 gi|435851784|ref|YP_007313370.1| - 0.016 14.7 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4964) MFS_1 PF07690.16 gi|435851785|ref|YP_007313371.1| - 1.3e-61 208.5 68.7 2.5e-46 158.2 38.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|435851785|ref|YP_007313371.1| - 1.5e-05 24.0 26.3 6.4e-05 22.0 25.9 2.0 1 1 0 1 1 1 1 Sugar (and other) transporter DUF2892 PF11127.8 gi|435851786|ref|YP_007313372.1| - 5.7e-13 48.7 0.3 6.9e-13 48.4 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Putative_PNPOx PF01243.20 gi|435851787|ref|YP_007313373.1| - 2.5e-06 27.6 0.0 3.7e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_oxidase_2 PF13883.6 gi|435851787|ref|YP_007313373.1| - 0.069 13.1 0.0 0.082 12.9 0.0 1.1 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase CitMHS PF03600.16 gi|435851788|ref|YP_007313374.1| - 3.1e-35 121.8 27.4 3.1e-35 121.8 27.4 1.4 1 1 0 1 1 1 1 Citrate transporter Na_sulph_symp PF00939.19 gi|435851788|ref|YP_007313374.1| - 4.4e-06 26.0 30.9 0.00038 19.6 17.2 3.1 1 1 1 2 2 2 2 Sodium:sulfate symporter transmembrane region ORC4_C PF14629.6 gi|435851788|ref|YP_007313374.1| - 0.11 11.9 0.2 0.2 11.0 0.2 1.4 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 4 C-terminus Proton_antipo_M PF00361.20 gi|435851790|ref|YP_007313376.1| - 4.9e-70 236.0 22.3 4.9e-70 236.0 22.3 3.4 3 1 0 3 3 3 1 Proton-conducting membrane transporter DUF4040 PF13244.6 gi|435851790|ref|YP_007313376.1| - 1.8e-18 66.4 8.6 1.8e-18 66.4 8.6 5.3 6 0 0 6 6 6 1 Domain of unknown function (DUF4040) Proton_antipo_N PF00662.20 gi|435851790|ref|YP_007313376.1| - 4.8e-12 45.8 0.8 4.8e-12 45.8 0.8 5.2 5 0 0 5 5 5 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2585 PF10755.9 gi|435851790|ref|YP_007313376.1| - 9.3e-05 22.2 2.8 0.032 13.9 0.3 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF2585) MnhB PF04039.13 gi|435851791|ref|YP_007313377.1| - 1.7e-32 112.3 10.2 2e-32 112.1 10.2 1.0 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2207 PF09972.9 gi|435851791|ref|YP_007313377.1| - 0.49 9.1 3.3 0.64 8.7 3.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Oxidored_q2 PF00420.24 gi|435851792|ref|YP_007313378.1| - 2e-36 123.8 5.4 2.7e-36 123.4 5.4 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Proton_antipo_M PF00361.20 gi|435851793|ref|YP_007313379.1| - 2.9e-65 220.4 31.3 2.9e-65 220.4 31.3 2.3 3 0 0 3 3 3 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|435851793|ref|YP_007313379.1| - 4.4e-06 26.2 6.2 4.4e-06 26.2 6.2 2.5 2 0 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Proton_antipo_N PF00662.20 gi|435851793|ref|YP_007313379.1| - 2.1e-05 24.5 1.5 0.00017 21.6 0.4 2.9 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YlaC PF10777.9 gi|435851793|ref|YP_007313379.1| - 0.082 12.7 7.2 12 5.7 0.1 3.7 3 0 0 3 3 3 0 Inner membrane protein YlaC MNHE PF01899.16 gi|435851794|ref|YP_007313380.1| - 1.3e-44 151.5 0.1 1.4e-44 151.3 0.1 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit 7TM_GPCR_Srz PF10325.9 gi|435851794|ref|YP_007313380.1| - 0.0058 16.0 1.4 0.0074 15.7 1.4 1.1 1 0 0 1 1 1 1 Serpentine type 7TM GPCR chemoreceptor Srz MrpF_PhaF PF04066.13 gi|435851795|ref|YP_007313381.1| - 3.1e-19 69.1 5.7 3.1e-19 69.1 5.7 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) PhaG_MnhG_YufB PF03334.14 gi|435851796|ref|YP_007313382.1| - 5e-23 81.1 11.7 7.3e-23 80.6 11.7 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF2976 PF11190.8 gi|435851796|ref|YP_007313382.1| - 0.34 10.7 3.8 0.92 9.3 3.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2976) DUF973 PF06157.11 gi|435851796|ref|YP_007313382.1| - 0.44 9.5 6.8 0.49 9.4 6.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) CBP_BcsF PF11120.8 gi|435851796|ref|YP_007313382.1| - 2.1 8.5 4.9 2.1 8.5 1.4 2.3 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsF RuBisCO_large PF00016.20 gi|435851797|ref|YP_007313383.1| - 7.8e-80 268.2 0.1 9.9e-80 267.9 0.1 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|435851797|ref|YP_007313383.1| - 5.2e-37 126.7 0.0 1.2e-36 125.5 0.0 1.6 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain PMM PF03332.13 gi|435851797|ref|YP_007313383.1| - 0.11 12.3 0.1 0.61 9.8 0.0 2.0 1 1 1 2 2 2 0 Eukaryotic phosphomannomutase Sua5_yciO_yrdC PF01300.18 gi|435851798|ref|YP_007313384.1| - 3.2e-57 192.9 0.1 4.5e-57 192.4 0.1 1.2 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|435851798|ref|YP_007313384.1| - 2.7e-29 102.4 0.0 4.3e-29 101.8 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding PolC_DP2 PF03833.13 gi|435851801|ref|YP_007313387.1| - 0 1330.4 0.0 0 1329.5 0.0 1.4 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 DZR PF12773.7 gi|435851801|ref|YP_007313387.1| - 0.16 12.0 15.2 3.3 7.8 0.2 3.0 2 1 0 2 2 2 0 Double zinc ribbon DUF2072 PF09845.9 gi|435851801|ref|YP_007313387.1| - 4.6 7.5 9.5 0.27 11.5 0.1 3.2 3 0 0 3 3 3 0 Zn-ribbon containing protein Radical_SAM PF04055.21 gi|435851802|ref|YP_007313388.1| - 2.3e-13 50.8 7.1 2.7e-11 44.1 7.1 2.9 1 1 0 1 1 1 1 Radical SAM superfamily MCR_beta PF02241.18 gi|435851803|ref|YP_007313389.1| - 8.8e-134 444.8 5.6 1.6e-133 443.9 5.6 1.4 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|435851803|ref|YP_007313389.1| - 5.7e-84 280.3 5.7 9.1e-84 279.6 5.7 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_D PF02505.14 gi|435851804|ref|YP_007313390.1| - 5.3e-55 185.2 0.0 6.1e-55 185.0 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_C PF04609.12 gi|435851805|ref|YP_007313391.1| - 1.1e-07 31.2 1.7 2.2e-07 30.2 1.7 1.5 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF1758 PF05585.12 gi|435851805|ref|YP_007313391.1| - 0.062 13.1 0.1 0.11 12.3 0.1 1.3 1 1 0 1 1 1 0 Putative peptidase (DUF1758) MCR_gamma PF02240.16 gi|435851806|ref|YP_007313392.1| - 3.2e-117 390.1 0.8 3.6e-117 389.9 0.8 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_alpha_N PF02745.15 gi|435851807|ref|YP_007313393.1| - 1.6e-142 473.7 0.6 2.1e-142 473.3 0.6 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|435851807|ref|YP_007313393.1| - 4.1e-67 224.4 5.3 1.2e-66 223.0 5.3 1.8 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain Hydantoinase_A PF01968.18 gi|435851808|ref|YP_007313394.1| - 6e-35 120.9 3.3 7.1e-33 114.1 0.5 3.1 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|435851808|ref|YP_007313394.1| - 2.3e-31 108.9 7.7 9.5e-28 97.1 2.8 3.7 3 1 0 3 3 3 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|435851808|ref|YP_007313394.1| - 2.6e-07 29.6 1.6 0.0021 16.7 0.3 2.3 2 0 0 2 2 2 2 MutL protein ROK PF00480.20 gi|435851808|ref|YP_007313394.1| - 0.0025 17.3 0.4 0.013 15.0 0.1 2.2 2 0 0 2 2 2 1 ROK family BcrAD_BadFG PF01869.20 gi|435851808|ref|YP_007313394.1| - 0.0063 16.0 0.1 0.67 9.4 0.0 2.6 2 1 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family StbA PF06406.11 gi|435851808|ref|YP_007313394.1| - 0.08 12.2 1.0 0.24 10.6 0.1 2.3 2 0 0 2 2 2 0 StbA protein FtsA PF14450.6 gi|435851808|ref|YP_007313394.1| - 0.2 12.1 2.1 8.9 6.8 0.1 3.1 2 0 0 2 2 2 0 Cell division protein FtsA EPSP_synthase PF00275.20 gi|435851809|ref|YP_007313395.1| - 5.5e-111 371.2 1.3 6.4e-111 371.0 1.3 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DUF488 PF04343.13 gi|435851810|ref|YP_007313396.1| - 3.5e-19 69.6 0.0 4.8e-18 65.9 0.0 2.1 1 1 0 1 1 1 1 Protein of unknown function, DUF488 Peptidase_M48 PF01435.18 gi|435851811|ref|YP_007313397.1| - 1.9e-35 122.4 0.2 3.1e-35 121.7 0.2 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|435851811|ref|YP_007313397.1| - 0.00039 19.7 0.0 0.00088 18.5 0.0 1.5 1 0 0 1 1 1 1 BlaR1 peptidase M56 Yip1 PF04893.17 gi|435851811|ref|YP_007313397.1| - 0.014 15.1 0.6 0.014 15.1 0.6 2.2 2 0 0 2 2 2 0 Yip1 domain SprT-like PF10263.9 gi|435851811|ref|YP_007313397.1| - 0.019 14.8 0.1 0.028 14.3 0.1 1.3 1 0 0 1 1 1 0 SprT-like family BSP PF04450.12 gi|435851811|ref|YP_007313397.1| - 0.022 14.6 0.1 0.028 14.2 0.1 1.2 1 0 0 1 1 1 0 Peptidase of plants and bacteria Angiomotin_C PF12240.8 gi|435851812|ref|YP_007313398.1| - 0.00057 19.5 1.0 0.00066 19.3 1.0 1.1 1 0 0 1 1 1 1 Angiomotin C terminal DUF4055 PF13264.6 gi|435851812|ref|YP_007313398.1| - 0.027 14.6 0.4 0.029 14.5 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4055) P22_Tail-4 PF11650.8 gi|435851812|ref|YP_007313398.1| - 0.13 12.2 2.0 0.16 11.9 1.9 1.2 1 1 0 1 1 1 0 P22 tail accessory factor Lant_dehydr_C PF14028.6 gi|435851813|ref|YP_007313399.1| - 0.013 15.0 0.7 0.024 14.2 0.7 1.3 1 0 0 1 1 1 0 Lantibiotic biosynthesis dehydratase C-term DUF4268 PF14088.6 gi|435851813|ref|YP_007313399.1| - 0.096 12.6 1.9 8 6.3 0.2 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4268) DUF5082 PF16888.5 gi|435851813|ref|YP_007313399.1| - 0.15 12.3 10.2 0.2 11.9 7.2 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) LUD_dom PF02589.15 gi|435851813|ref|YP_007313399.1| - 0.26 11.0 2.1 1.3 8.7 2.1 2.2 1 1 0 1 1 1 0 LUD domain MscS_porin PF12795.7 gi|435851813|ref|YP_007313399.1| - 0.5 9.9 13.8 2.7 7.5 3.6 2.3 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain FlgN PF05130.12 gi|435851813|ref|YP_007313399.1| - 0.51 10.9 7.7 0.26 11.8 2.4 2.3 1 1 1 2 2 2 0 FlgN protein Sec5 PF15469.6 gi|435851813|ref|YP_007313399.1| - 1.6 8.5 12.7 11 5.7 12.7 2.2 1 1 0 1 1 1 0 Exocyst complex component Sec5 CSN5_C PF18323.1 gi|435851813|ref|YP_007313399.1| - 3 8.8 7.3 0.2 12.6 0.4 2.6 3 1 0 3 3 3 0 Cop9 signalosome subunit 5 C-terminal domain HTH_24 PF13412.6 gi|435851815|ref|YP_007313401.1| - 4.4e-06 26.2 0.4 7.6e-06 25.4 0.4 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Gram_pos_anchor PF00746.21 gi|435851815|ref|YP_007313401.1| - 3.2e-05 23.8 0.8 5.3e-05 23.1 0.8 1.3 1 0 0 1 1 1 1 LPXTG cell wall anchor motif MarR PF01047.22 gi|435851815|ref|YP_007313401.1| - 0.0024 17.7 0.0 0.0041 17.0 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|435851815|ref|YP_007313401.1| - 0.01 15.7 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|435851815|ref|YP_007313401.1| - 0.019 14.9 0.0 0.035 14.1 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|435851815|ref|YP_007313401.1| - 0.037 13.9 0.1 0.076 12.9 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_53 PF18606.1 gi|435851815|ref|YP_007313401.1| - 0.045 13.4 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Zap helix turn helix N-terminal domain YdaS_antitoxin PF15943.5 gi|435851815|ref|YP_007313401.1| - 0.063 13.2 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Penicillinase_R PF03965.16 gi|435851815|ref|YP_007313401.1| - 0.067 13.6 0.1 0.13 12.6 0.1 1.4 1 0 0 1 1 1 0 Penicillinase repressor Phage_holin_3_6 PF07332.11 gi|435851815|ref|YP_007313401.1| - 0.13 12.3 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III ACT PF01842.25 gi|435851816|ref|YP_007313402.1| - 0.027 14.3 0.4 0.06 13.1 0.1 1.8 2 0 0 2 2 2 0 ACT domain HMA PF00403.26 gi|435851816|ref|YP_007313402.1| - 0.24 11.9 1.1 14 6.2 0.0 2.7 3 0 0 3 3 3 0 Heavy-metal-associated domain Homoserine_dh PF00742.19 gi|435851817|ref|YP_007313403.1| - 1.3e-55 188.0 1.0 1.7e-55 187.6 0.3 1.6 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|435851817|ref|YP_007313403.1| - 7.3e-11 42.7 0.2 2.2e-10 41.2 0.2 1.9 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|435851817|ref|YP_007313403.1| - 0.00024 20.9 0.3 0.00046 20.0 0.3 1.6 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|435851817|ref|YP_007313403.1| - 0.00056 20.2 0.3 0.0011 19.2 0.3 1.6 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|435851817|ref|YP_007313403.1| - 0.03 14.6 0.7 0.066 13.5 0.7 1.6 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.18 gi|435851817|ref|YP_007313403.1| - 0.075 12.9 0.4 0.14 12.0 0.4 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DNA_ligase_A_M PF01068.21 gi|435851818|ref|YP_007313404.1| - 2.1e-61 207.1 0.0 3.5e-61 206.4 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|435851818|ref|YP_007313404.1| - 2.1e-32 112.8 0.0 3.7e-32 112.0 0.0 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|435851818|ref|YP_007313404.1| - 1.5e-18 67.3 0.0 6e-18 65.3 0.0 2.0 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region Cupredoxin_1 PF13473.6 gi|435851819|ref|YP_007313405.1| - 1.1e-06 28.6 0.0 1.4e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|435851819|ref|YP_007313405.1| - 0.00095 19.6 0.3 0.06 13.8 0.3 2.3 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family DUF5074 PF16819.5 gi|435851819|ref|YP_007313405.1| - 0.036 14.1 1.5 0.044 13.8 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5074) MFS_1 PF07690.16 gi|435851820|ref|YP_007313406.1| - 1.6e-63 214.8 38.1 6.5e-34 117.4 11.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|435851820|ref|YP_007313406.1| - 3e-15 56.0 29.3 1.2e-07 30.9 7.3 3.9 1 1 3 4 4 4 3 MFS_1 like family Sugar_tr PF00083.24 gi|435851820|ref|YP_007313406.1| - 3.6e-12 45.9 35.3 1.4e-08 34.1 12.4 3.6 1 1 1 3 3 3 3 Sugar (and other) transporter MFS_3 PF05977.13 gi|435851820|ref|YP_007313406.1| - 0.001 17.5 19.3 0.01 14.3 4.1 2.1 1 1 1 2 2 2 2 Transmembrane secretion effector DUF4271 PF14093.6 gi|435851820|ref|YP_007313406.1| - 0.0076 16.2 1.6 0.0076 16.2 1.6 2.6 3 1 0 3 3 3 1 Domain of unknown function (DUF4271) DUF805 PF05656.14 gi|435851820|ref|YP_007313406.1| - 0.88 10.0 13.0 2 8.8 5.5 3.5 1 1 1 2 2 2 0 Protein of unknown function (DUF805) PmbA_TldD PF01523.16 gi|435851821|ref|YP_007313407.1| - 2.3e-55 188.4 0.6 3.6e-55 187.8 0.6 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Entericidin PF08085.11 gi|435851821|ref|YP_007313407.1| - 0.092 12.8 0.4 0.26 11.4 0.4 1.8 1 0 0 1 1 1 0 Entericidin EcnA/B family PmbA_TldD PF01523.16 gi|435851822|ref|YP_007313408.1| - 1.3e-64 218.7 0.5 1.9e-64 218.2 0.5 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Lon_C PF05362.13 gi|435851823|ref|YP_007313409.1| - 1.2e-32 113.1 3.5 2e-32 112.4 3.5 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|435851823|ref|YP_007313409.1| - 5.5e-25 88.1 0.1 1e-17 64.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|435851823|ref|YP_007313409.1| - 1.3e-16 60.6 0.1 5.1e-10 39.1 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|435851823|ref|YP_007313409.1| - 5.2e-15 55.5 0.2 2e-08 34.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|435851823|ref|YP_007313409.1| - 9e-12 45.2 0.1 0.00028 20.9 0.0 3.8 4 0 0 4 4 4 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|435851823|ref|YP_007313409.1| - 5.5e-10 39.1 0.5 1.2e-09 38.0 0.5 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.29 gi|435851823|ref|YP_007313409.1| - 4.6e-08 33.6 0.0 0.011 16.1 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|435851823|ref|YP_007313409.1| - 7.1e-06 25.3 3.6 0.093 11.8 0.0 3.5 4 0 0 4 4 4 2 MCM P-loop domain AAA_22 PF13401.6 gi|435851823|ref|YP_007313409.1| - 2.6e-05 24.5 0.0 0.0012 19.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|435851823|ref|YP_007313409.1| - 6.4e-05 22.7 0.1 0.047 13.4 0.1 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_3 PF07726.11 gi|435851823|ref|YP_007313409.1| - 6.9e-05 22.7 0.1 0.31 10.9 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|435851823|ref|YP_007313409.1| - 7.1e-05 22.4 0.0 0.00054 19.5 0.0 2.1 2 0 0 2 2 2 1 P-loop containing dynein motor region Sigma54_activ_2 PF14532.6 gi|435851823|ref|YP_007313409.1| - 0.00029 21.0 0.0 0.99 9.5 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_19 PF13245.6 gi|435851823|ref|YP_007313409.1| - 0.00033 21.0 0.9 0.0029 18.0 0.9 2.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|435851823|ref|YP_007313409.1| - 0.0019 17.9 0.9 0.021 14.6 0.1 2.7 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|435851823|ref|YP_007313409.1| - 0.0041 17.5 0.0 0.093 13.1 0.0 2.7 3 0 0 3 3 3 1 AAA ATPase domain Parvo_NS1 PF01057.17 gi|435851823|ref|YP_007313409.1| - 0.0066 15.6 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|435851823|ref|YP_007313409.1| - 0.0068 15.9 0.0 0.017 14.6 0.0 1.6 1 0 0 1 1 1 1 PhoH-like protein L_lac_phage_MSP PF06488.11 gi|435851823|ref|YP_007313409.1| - 0.0072 15.6 0.5 0.011 15.0 0.5 1.3 1 0 0 1 1 1 1 Phage tail tube protein IstB_IS21 PF01695.17 gi|435851823|ref|YP_007313409.1| - 0.018 14.8 0.0 0.064 13.0 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|435851823|ref|YP_007313409.1| - 0.025 14.8 0.0 0.061 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|435851823|ref|YP_007313409.1| - 0.034 14.6 0.0 0.14 12.7 0.0 2.0 2 0 0 2 2 2 0 ABC transporter DUF815 PF05673.13 gi|435851823|ref|YP_007313409.1| - 0.035 13.3 0.0 0.11 11.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_18 PF13238.6 gi|435851823|ref|YP_007313409.1| - 0.035 14.6 0.0 0.094 13.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|435851823|ref|YP_007313409.1| - 0.074 12.0 0.0 0.14 11.0 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF2075 PF09848.9 gi|435851823|ref|YP_007313409.1| - 0.11 11.7 0.0 0.21 10.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.6 gi|435851823|ref|YP_007313409.1| - 0.12 12.6 0.0 0.33 11.2 0.0 1.8 2 0 0 2 2 1 0 AAA domain Rubrerythrin PF02915.17 gi|435851825|ref|YP_007313411.1| - 1.7e-24 86.8 5.5 6.3e-23 81.7 5.4 2.1 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|435851825|ref|YP_007313411.1| - 0.00039 20.4 0.9 0.00086 19.3 0.7 1.7 1 1 0 1 1 1 1 Ferritin-like domain Ogr_Delta PF04606.12 gi|435851825|ref|YP_007313411.1| - 0.0053 16.7 1.6 1.9 8.5 0.3 2.5 2 0 0 2 2 2 2 Ogr/Delta-like zinc finger Zn-ribbon_8 PF09723.10 gi|435851825|ref|YP_007313411.1| - 0.01 15.9 3.0 0.01 15.9 3.0 1.9 2 0 0 2 2 1 0 Zinc ribbon domain DZR PF12773.7 gi|435851825|ref|YP_007313411.1| - 0.035 14.1 0.8 0.055 13.5 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|435851825|ref|YP_007313411.1| - 0.16 12.1 0.3 0.16 12.1 0.3 2.5 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain RecR PF02132.15 gi|435851825|ref|YP_007313411.1| - 0.18 11.4 0.7 0.42 10.2 0.7 1.6 1 0 0 1 1 1 0 RecR protein OrfB_Zn_ribbon PF07282.11 gi|435851825|ref|YP_007313411.1| - 0.24 11.3 1.7 0.47 10.4 1.7 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|435851825|ref|YP_007313411.1| - 0.27 11.2 4.0 3 7.8 0.2 2.6 3 0 0 3 3 3 0 Nudix N-terminal A2L_zn_ribbon PF08792.10 gi|435851825|ref|YP_007313411.1| - 0.31 10.8 2.4 0.95 9.3 0.4 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|435851825|ref|YP_007313411.1| - 0.44 10.0 6.6 3.6 7.1 6.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|435851825|ref|YP_007313411.1| - 0.81 9.8 4.2 1.8 8.7 4.2 1.6 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin_2 PF18073.1 gi|435851825|ref|YP_007313411.1| - 0.84 9.4 4.8 8 6.3 4.8 2.2 1 1 0 1 1 1 0 Rubredoxin metal binding domain zinc_ribbon_2 PF13240.6 gi|435851825|ref|YP_007313411.1| - 0.98 9.2 4.2 3.8 7.3 3.9 2.0 1 1 1 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.20 gi|435851825|ref|YP_007313411.1| - 1.5 8.9 4.5 7.3 6.7 0.6 2.4 1 1 1 2 2 2 0 Rubredoxin Rad50_zn_hook PF04423.14 gi|435851825|ref|YP_007313411.1| - 2.2 8.2 3.7 19 5.2 0.8 3.0 3 0 0 3 3 3 0 Rad50 zinc hook motif zf-NADH-PPase PF09297.11 gi|435851825|ref|YP_007313411.1| - 7.9 6.2 7.1 24 4.7 1.1 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain LMWPc PF01451.21 gi|435851826|ref|YP_007313412.1| - 2.5e-15 57.1 0.0 3.1e-15 56.8 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase PfkB PF00294.24 gi|435851827|ref|YP_007313413.1| - 1.8e-50 172.0 0.0 2.1e-50 171.7 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase FTHFS PF01268.19 gi|435851827|ref|YP_007313413.1| - 0.091 10.9 0.0 0.13 10.4 0.0 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase DUF555 PF04475.12 gi|435851828|ref|YP_007313414.1| - 4e-48 161.9 0.1 4.6e-48 161.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) RuvX PF03652.15 gi|435851828|ref|YP_007313414.1| - 0.022 15.1 0.0 0.029 14.8 0.0 1.1 1 0 0 1 1 1 0 Holliday junction resolvase DUF357 PF04010.13 gi|435851829|ref|YP_007313415.1| - 6.4e-31 106.2 0.3 7.4e-31 106.0 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) DUF5503 PF17607.2 gi|435851829|ref|YP_007313415.1| - 0.16 12.3 0.0 0.2 11.9 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5503) DUF87 PF01935.17 gi|435851830|ref|YP_007313416.1| - 5.2e-39 134.7 0.1 7.9e-39 134.1 0.1 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|435851830|ref|YP_007313416.1| - 5.3e-05 22.3 0.1 0.00025 20.1 0.1 1.9 2 0 0 2 2 2 1 AAA-like domain DUF853 PF05872.12 gi|435851830|ref|YP_007313416.1| - 5.6e-05 21.9 0.0 0.11 11.1 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|435851830|ref|YP_007313416.1| - 0.00061 18.8 0.0 0.074 11.9 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain HAS-barrel PF09378.10 gi|435851830|ref|YP_007313416.1| - 0.00073 19.6 0.6 0.0025 17.9 0.1 2.1 2 0 0 2 2 2 1 HAS barrel domain DEAD PF00270.29 gi|435851830|ref|YP_007313416.1| - 0.0063 16.3 0.0 4.4 7.0 0.0 2.7 2 1 0 2 2 2 2 DEAD/DEAH box helicase Paxillin PF03535.13 gi|435851830|ref|YP_007313416.1| - 0.12 12.3 0.9 0.25 11.2 0.9 1.5 1 0 0 1 1 1 0 Paxillin family TP_methylase PF00590.20 gi|435851831|ref|YP_007313417.1| - 1.1e-16 61.4 0.0 1.4e-16 61.1 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Cpn60_TCP1 PF00118.24 gi|435851832|ref|YP_007313418.1| - 2.3e-161 537.8 19.2 2.6e-161 537.6 19.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Alba PF01918.21 gi|435851832|ref|YP_007313418.1| - 0.045 13.6 0.0 0.14 12.0 0.0 1.9 1 0 0 1 1 1 0 Alba DUF2119 PF09892.9 gi|435851833|ref|YP_007313419.1| - 2.5e-69 232.5 0.0 2.8e-69 232.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2119) Ribosomal_S8 PF00410.19 gi|435851833|ref|YP_007313419.1| - 0.009 16.0 0.4 1.9 8.4 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein S8 Chordopox_G2 PF05796.12 gi|435851833|ref|YP_007313419.1| - 0.042 13.3 0.2 0.069 12.6 0.2 1.3 1 0 0 1 1 1 0 Chordopoxvirus protein G2 Nup54_57_C PF18570.1 gi|435851833|ref|YP_007313419.1| - 0.37 10.4 1.8 1.1 8.9 0.0 2.6 3 0 0 3 3 3 0 NUP57/Nup54 C-terminal domain S4 PF01479.25 gi|435851834|ref|YP_007313420.1| - 1e-11 44.3 0.1 2.2e-11 43.3 0.1 1.6 1 0 0 1 1 1 1 S4 domain FtsJ PF01728.19 gi|435851834|ref|YP_007313420.1| - 2e-09 37.8 0.0 7.4e-09 36.0 0.0 2.1 2 1 0 2 2 2 1 FtsJ-like methyltransferase Fibrillarin PF01269.17 gi|435851834|ref|YP_007313420.1| - 7.1e-07 28.6 0.0 9.1e-07 28.2 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_25 PF13649.6 gi|435851834|ref|YP_007313420.1| - 2.4e-06 28.1 0.0 3.8e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|435851834|ref|YP_007313420.1| - 2.7e-06 27.3 0.0 3.6e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435851834|ref|YP_007313420.1| - 3.1e-05 24.6 0.0 5e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|435851834|ref|YP_007313420.1| - 0.0033 17.3 0.0 0.0046 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|435851834|ref|YP_007313420.1| - 0.052 12.8 0.0 4.8 6.4 0.0 2.2 1 1 1 2 2 2 0 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.6 gi|435851834|ref|YP_007313420.1| - 0.1 13.7 0.0 0.19 12.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain SBF PF01758.16 gi|435851835|ref|YP_007313421.1| - 2.1e-44 151.5 19.5 4.4e-44 150.5 19.5 1.5 1 0 0 1 1 1 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|435851835|ref|YP_007313421.1| - 7.5e-16 58.3 20.8 8.8e-16 58.1 20.8 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Mem_trans PF03547.18 gi|435851835|ref|YP_007313421.1| - 0.074 11.4 18.1 0.0082 14.6 6.6 2.6 1 1 2 3 3 3 0 Membrane transport protein HAD_2 PF13419.6 gi|435851836|ref|YP_007313422.1| - 4.8e-34 118.0 0.0 5.7e-34 117.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|435851836|ref|YP_007313422.1| - 7.3e-16 59.1 0.2 1.8e-14 54.5 0.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|435851836|ref|YP_007313422.1| - 9.2e-06 25.5 0.0 0.00018 21.3 0.0 2.1 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase Hydrolase_like PF13242.6 gi|435851836|ref|YP_007313422.1| - 0.00048 20.1 0.0 0.00096 19.2 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|435851836|ref|YP_007313422.1| - 0.016 15.6 0.0 0.033 14.6 0.0 1.5 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Oxidored_FMN PF00724.20 gi|435851837|ref|YP_007313423.1| - 2e-67 227.9 0.0 2.4e-67 227.6 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.21 gi|435851837|ref|YP_007313423.1| - 7.6e-05 22.3 0.1 0.00018 21.0 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein Dus PF01207.17 gi|435851837|ref|YP_007313423.1| - 0.00049 19.3 0.1 0.0015 17.7 0.0 1.8 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) TMP-TENI PF02581.17 gi|435851837|ref|YP_007313423.1| - 0.064 12.6 0.0 0.12 11.7 0.0 1.6 1 0 0 1 1 1 0 Thiamine monophosphate synthase HMGL-like PF00682.19 gi|435851837|ref|YP_007313423.1| - 0.16 11.5 0.0 0.74 9.3 0.0 1.9 2 0 0 2 2 2 0 HMGL-like FMN_red PF03358.15 gi|435851838|ref|YP_007313424.1| - 2.5e-24 85.8 0.0 3e-24 85.5 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|435851838|ref|YP_007313424.1| - 4.8e-13 49.3 0.0 6.3e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|435851838|ref|YP_007313424.1| - 0.0026 18.0 0.0 0.0047 17.2 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain DUF2183 PF09949.9 gi|435851838|ref|YP_007313424.1| - 0.2 12.0 0.0 0.41 11.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2183) HxlR PF01638.17 gi|435851839|ref|YP_007313425.1| - 4.2e-32 109.9 0.1 4.9e-32 109.6 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|435851839|ref|YP_007313425.1| - 0.079 12.9 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 MarR family PadR PF03551.14 gi|435851839|ref|YP_007313425.1| - 0.08 12.9 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|435851839|ref|YP_007313425.1| - 0.091 12.9 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Flavodoxin_3 PF12641.7 gi|435851840|ref|YP_007313426.1| - 3.8e-19 69.0 0.0 4.7e-19 68.7 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_5 PF12724.7 gi|435851840|ref|YP_007313426.1| - 4.5e-10 39.9 0.0 6.1e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|435851840|ref|YP_007313426.1| - 0.00024 21.3 0.0 0.00045 20.4 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_4 PF12682.7 gi|435851840|ref|YP_007313426.1| - 0.013 15.3 0.3 0.88 9.3 0.1 2.2 1 1 1 2 2 2 0 Flavodoxin DUF2070 PF09843.9 gi|435851841|ref|YP_007313427.1| - 1.7 6.9 7.8 1.8 6.7 7.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Peptidase_U4 PF03419.13 gi|435851841|ref|YP_007313427.1| - 2 7.6 9.0 2.4 7.4 9.0 1.1 1 0 0 1 1 1 0 Sporulation factor SpoIIGA Radical_SAM PF04055.21 gi|435851842|ref|YP_007313428.1| - 8.4e-14 52.3 0.5 1.5e-13 51.5 0.4 1.5 1 1 0 1 1 1 1 Radical SAM superfamily TssR PF17643.1 gi|435851842|ref|YP_007313428.1| - 0.019 13.0 0.0 0.025 12.5 0.0 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssR G5 PF07501.12 gi|435851842|ref|YP_007313428.1| - 0.074 13.5 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 G5 domain Acetyltransf_3 PF13302.7 gi|435851843|ref|YP_007313429.1| - 7e-25 88.3 0.0 8.7e-25 88.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|435851843|ref|YP_007313429.1| - 3.2e-10 40.3 0.3 5.1e-10 39.6 0.3 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|435851843|ref|YP_007313429.1| - 3.6e-09 36.9 0.1 4.1e-09 36.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|435851843|ref|YP_007313429.1| - 2.9e-08 33.5 0.0 4e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|435851843|ref|YP_007313429.1| - 0.0013 18.6 0.1 0.0021 18.0 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein DUF3382 PF11862.8 gi|435851844|ref|YP_007313430.1| - 0.0046 17.2 0.8 0.0052 17.0 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3382) DUF4079 PF13301.6 gi|435851844|ref|YP_007313430.1| - 0.0067 16.6 0.1 0.0073 16.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4079) FtsX PF02687.21 gi|435851844|ref|YP_007313430.1| - 0.21 12.1 6.0 0.28 11.7 6.0 1.1 1 0 0 1 1 1 0 FtsX-like permease family E1-E2_ATPase PF00122.20 gi|435851845|ref|YP_007313431.1| - 2.4e-54 183.6 4.1 6.3e-54 182.2 4.1 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|435851845|ref|YP_007313431.1| - 4.6e-49 167.5 8.1 9.5e-49 166.5 8.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|435851845|ref|YP_007313431.1| - 1.3e-44 150.5 8.1 1.1e-15 57.8 1.1 3.7 3 0 0 3 3 3 3 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|435851845|ref|YP_007313431.1| - 2.1e-08 34.2 3.5 2e-05 24.5 0.4 2.9 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|435851845|ref|YP_007313431.1| - 4.6e-05 23.9 0.1 0.0002 21.8 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase RRM_3 PF08777.11 gi|435851845|ref|YP_007313431.1| - 0.00066 19.7 5.1 1.6 8.8 0.1 4.3 3 1 1 4 4 4 1 RNA binding motif PFK PF00365.20 gi|435851845|ref|YP_007313431.1| - 0.00087 18.7 1.8 0.042 13.2 0.4 2.3 2 0 0 2 2 2 1 Phosphofructokinase Tox-PL-2 PF15643.6 gi|435851845|ref|YP_007313431.1| - 0.0033 17.5 0.3 1.8 8.8 0.0 3.0 3 0 0 3 3 2 1 Papain fold toxin 2 GARS_C PF02843.16 gi|435851845|ref|YP_007313431.1| - 0.0064 16.8 1.3 0.051 13.9 0.3 2.8 1 1 1 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain Hydrolase_6 PF13344.6 gi|435851845|ref|YP_007313431.1| - 0.017 15.2 0.0 0.2 11.8 0.0 2.6 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase FeS_assembly_P PF01883.19 gi|435851845|ref|YP_007313431.1| - 0.052 13.7 0.3 20 5.5 0.0 3.7 3 0 0 3 3 3 0 Iron-sulfur cluster assembly protein DUF2575 PF10837.8 gi|435851845|ref|YP_007313431.1| - 0.11 12.8 0.1 0.28 11.5 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2575) TusA PF01206.17 gi|435851845|ref|YP_007313431.1| - 0.11 12.3 1.7 12 5.8 0.0 3.8 4 0 0 4 4 4 0 Sulfurtransferase TusA HAD_2 PF13419.6 gi|435851845|ref|YP_007313431.1| - 0.12 12.5 0.1 0.44 10.6 0.1 2.0 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase PCP_red PF08369.10 gi|435851845|ref|YP_007313431.1| - 0.12 12.6 0.4 0.35 11.1 0.4 1.8 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit Thioredoxin_3 PF13192.6 gi|435851845|ref|YP_007313431.1| - 0.14 12.2 6.0 0.65 10.1 0.1 3.9 4 0 0 4 4 4 0 Thioredoxin domain ADH_zinc_N PF00107.26 gi|435851845|ref|YP_007313431.1| - 0.14 12.1 1.7 0.24 11.4 0.4 2.1 2 0 0 2 2 2 0 Zinc-binding dehydrogenase HMA PF00403.26 gi|435851846|ref|YP_007313432.1| - 2.6e-21 75.8 2.9 2.9e-21 75.7 2.9 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Mrr_cat PF04471.12 gi|435851847|ref|YP_007313433.1| - 1.7e-28 98.9 0.0 3.3e-28 98.0 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|435851847|ref|YP_007313433.1| - 3.7e-10 39.8 0.0 8e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease bPH_3 PF14470.6 gi|435851847|ref|YP_007313433.1| - 0.00081 19.7 0.1 1.1 9.7 0.1 2.5 1 1 1 2 2 2 2 Bacterial PH domain WD40_like PF17005.5 gi|435851847|ref|YP_007313433.1| - 0.13 11.6 0.3 1.6 8.0 0.0 2.2 2 0 0 2 2 2 0 WD40-like domain Thioredoxin PF00085.20 gi|435851848|ref|YP_007313434.1| - 1.2e-25 89.4 0.0 1.5e-25 89.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|435851848|ref|YP_007313434.1| - 3.7e-06 27.4 0.1 2.6e-05 24.6 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain OST3_OST6 PF04756.13 gi|435851848|ref|YP_007313434.1| - 8.5e-06 25.3 0.0 9.7e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_8 PF13905.6 gi|435851848|ref|YP_007313434.1| - 0.00013 22.3 0.1 0.046 14.1 0.0 2.5 2 1 1 3 3 3 2 Thioredoxin-like HyaE PF07449.11 gi|435851848|ref|YP_007313434.1| - 0.0011 18.9 0.0 0.003 17.5 0.0 1.7 2 0 0 2 2 2 1 Hydrogenase-1 expression protein HyaE Thioredoxin_9 PF14595.6 gi|435851848|ref|YP_007313434.1| - 0.0059 16.4 0.1 0.008 16.0 0.1 1.4 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_6 PF13848.6 gi|435851848|ref|YP_007313434.1| - 0.053 13.4 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|435851848|ref|YP_007313434.1| - 0.072 13.1 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin domain DUF2114 PF09887.9 gi|435851849|ref|YP_007313435.1| - 2.1e-229 761.6 6.3 2.4e-229 761.4 6.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) HHH_8 PF14716.6 gi|435851850|ref|YP_007313436.1| - 1.6e-22 79.6 3.2 2e-20 72.9 1.0 3.4 3 0 0 3 3 3 1 Helix-hairpin-helix domain DNA_pol_B_thumb PF14791.6 gi|435851850|ref|YP_007313436.1| - 2.9e-19 69.0 0.0 1.2e-18 67.0 0.0 2.1 2 0 0 2 2 2 1 DNA polymerase beta thumb HHH_5 PF14520.6 gi|435851850|ref|YP_007313436.1| - 4.1e-11 43.3 3.3 4.7e-08 33.5 0.1 3.0 2 1 0 3 3 2 2 Helix-hairpin-helix domain PHP PF02811.19 gi|435851850|ref|YP_007313436.1| - 2.2e-10 41.1 0.0 8.1e-10 39.2 0.0 2.0 1 1 0 1 1 1 1 PHP domain HHH PF00633.23 gi|435851850|ref|YP_007313436.1| - 2e-05 24.2 1.0 0.072 13.0 0.0 3.6 4 0 0 4 4 4 2 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.6 gi|435851850|ref|YP_007313436.1| - 2.2e-05 24.6 0.2 0.00026 21.2 0.0 2.4 2 0 0 2 2 2 1 DNA polymerase beta palm RNase_P_p30 PF01876.16 gi|435851850|ref|YP_007313436.1| - 0.00035 20.1 0.0 0.00061 19.3 0.0 1.5 1 0 0 1 1 1 1 RNase P subunit p30 HHH_2 PF12826.7 gi|435851850|ref|YP_007313436.1| - 0.0013 18.7 0.3 1.9 8.7 0.0 3.8 2 1 2 4 4 4 1 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|435851850|ref|YP_007313436.1| - 0.0018 18.5 0.1 15 6.2 0.0 4.0 3 0 0 3 3 3 0 IMS family HHH motif DNA_pol_lambd_f PF10391.9 gi|435851850|ref|YP_007313436.1| - 0.019 14.8 0.0 0.073 12.9 0.0 2.0 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Peripla_BP_6 PF13458.6 gi|435851850|ref|YP_007313436.1| - 0.098 12.3 0.0 11 5.6 0.0 2.2 2 0 0 2 2 2 0 Periplasmic binding protein Cdd1 PF11731.8 gi|435851850|ref|YP_007313436.1| - 0.15 12.4 0.1 21 5.5 0.0 3.0 1 1 2 3 3 3 0 Pathogenicity locus DREV PF05219.12 gi|435851850|ref|YP_007313436.1| - 0.16 11.0 0.0 0.34 10.0 0.0 1.4 1 0 0 1 1 1 0 DREV methyltransferase DUF166 PF02593.14 gi|435851851|ref|YP_007313437.1| - 7.9e-62 208.7 0.0 9e-62 208.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DapB_N PF01113.20 gi|435851851|ref|YP_007313437.1| - 0.074 13.2 0.0 0.24 11.5 0.0 1.8 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus E1-E2_ATPase PF00122.20 gi|435851852|ref|YP_007313438.1| - 1.3e-52 177.9 2.1 1.3e-52 177.9 2.1 3.6 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|435851852|ref|YP_007313438.1| - 2e-39 135.2 12.3 2.8e-39 134.7 7.7 2.4 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|435851852|ref|YP_007313438.1| - 3.1e-24 86.4 2.1 8.9e-24 84.9 2.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|435851852|ref|YP_007313438.1| - 5.1e-17 61.3 0.2 4.4e-16 58.3 0.0 2.6 2 1 1 3 3 3 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|435851852|ref|YP_007313438.1| - 1.8e-10 40.7 0.0 4.4e-10 39.5 0.0 1.7 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|435851852|ref|YP_007313438.1| - 7e-09 35.8 0.4 2e-05 24.5 0.3 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|435851852|ref|YP_007313438.1| - 0.0013 19.2 0.0 0.0029 18.0 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Myco_19_kDa PF05481.12 gi|435851852|ref|YP_007313438.1| - 0.37 11.1 5.6 0.24 11.7 0.6 2.8 3 0 0 3 3 3 0 Mycobacterium 19 kDa lipoprotein antigen Thymidylate_kin PF02223.17 gi|435851853|ref|YP_007313439.1| - 4.8e-44 150.2 0.0 5.6e-44 150.0 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.6 gi|435851853|ref|YP_007313439.1| - 2.7e-08 34.4 0.0 5.3e-08 33.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|435851853|ref|YP_007313439.1| - 5.4e-06 26.9 0.0 0.13 12.6 0.0 2.4 2 1 0 2 2 2 2 AAA domain dNK PF01712.19 gi|435851853|ref|YP_007313439.1| - 1.1e-05 25.4 0.0 0.00021 21.2 0.0 2.1 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_33 PF13671.6 gi|435851853|ref|YP_007313439.1| - 1.9e-05 24.8 0.0 3.3e-05 24.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain CPT PF07931.12 gi|435851853|ref|YP_007313439.1| - 0.0054 16.6 0.0 0.037 13.9 0.0 2.1 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_28 PF13521.6 gi|435851853|ref|YP_007313439.1| - 0.0063 16.8 0.0 0.0098 16.1 0.0 1.3 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|435851853|ref|YP_007313439.1| - 0.032 13.9 0.0 0.054 13.2 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase AAA_22 PF13401.6 gi|435851853|ref|YP_007313439.1| - 0.08 13.2 0.3 0.31 11.3 0.2 2.1 2 1 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|435851853|ref|YP_007313439.1| - 0.1 12.5 0.0 0.2 11.5 0.0 1.5 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_16 PF13191.6 gi|435851853|ref|YP_007313439.1| - 0.12 12.7 0.0 0.16 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|435851853|ref|YP_007313439.1| - 0.14 12.7 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 ABC transporter DUF3892 PF13031.6 gi|435851854|ref|YP_007313440.1| - 0.029 15.0 0.1 0.038 14.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3892) His_biosynth PF00977.21 gi|435851855|ref|YP_007313441.1| - 2.2e-32 112.4 0.2 2.5e-32 112.2 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|435851855|ref|YP_007313441.1| - 0.033 13.5 0.2 0.073 12.4 0.2 1.5 1 1 0 1 1 1 0 Thiazole biosynthesis protein ThiG PcrB PF01884.17 gi|435851855|ref|YP_007313441.1| - 0.06 12.8 0.2 0.51 9.7 0.1 2.0 1 1 1 2 2 2 0 PcrB family UDPG_MGDP_dh_C PF03720.15 gi|435851855|ref|YP_007313441.1| - 0.064 13.7 0.0 0.17 12.3 0.0 1.7 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 4HFCP_synth PF04476.13 gi|435851856|ref|YP_007313442.1| - 4.1e-90 301.5 0.0 4.6e-90 301.3 0.0 1.0 1 0 0 1 1 1 1 4-HFC-P synthase DUF1849 PF08904.11 gi|435851856|ref|YP_007313442.1| - 0.081 12.5 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1849) Epimerase PF01370.21 gi|435851857|ref|YP_007313443.1| - 9.8e-50 169.3 0.0 1.2e-49 169.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|435851857|ref|YP_007313443.1| - 2.2e-46 158.8 0.1 1.6e-45 156.0 0.1 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|435851857|ref|YP_007313443.1| - 7.8e-22 77.6 0.0 9.8e-22 77.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|435851857|ref|YP_007313443.1| - 1.6e-16 60.3 0.0 2.2e-15 56.6 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|435851857|ref|YP_007313443.1| - 7.2e-14 52.1 0.0 1.1e-13 51.5 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|435851857|ref|YP_007313443.1| - 2.4e-13 49.8 0.0 3e-13 49.5 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|435851857|ref|YP_007313443.1| - 1.2e-12 47.5 0.1 1.1e-10 41.2 0.1 2.6 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 gi|435851857|ref|YP_007313443.1| - 2.6e-10 40.1 0.1 1.2e-08 34.7 0.1 2.8 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|435851857|ref|YP_007313443.1| - 1.1e-06 28.3 0.0 1.9e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|435851857|ref|YP_007313443.1| - 0.0016 18.4 0.1 0.0051 16.7 0.1 1.8 1 1 0 1 1 1 1 KR domain Sacchrp_dh_NADP PF03435.18 gi|435851857|ref|YP_007313443.1| - 0.0024 18.1 0.0 0.0041 17.4 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|435851857|ref|YP_007313443.1| - 0.012 15.8 0.0 0.051 13.8 0.0 2.0 2 0 0 2 2 2 0 TrkA-N domain adh_short_C2 PF13561.6 gi|435851857|ref|YP_007313443.1| - 0.047 13.3 0.0 0.12 11.9 0.0 1.8 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase NAD_binding_2 PF03446.15 gi|435851857|ref|YP_007313443.1| - 0.055 13.6 0.0 0.099 12.8 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase MazE_antitoxin PF04014.18 gi|435851858|ref|YP_007313444.1| - 0.0068 16.3 0.0 0.0095 15.9 0.0 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin HTH_3 PF01381.22 gi|435851859|ref|YP_007313445.1| - 7.7e-05 22.7 0.2 0.00014 21.9 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|435851859|ref|YP_007313445.1| - 0.0027 17.5 0.1 0.0049 16.6 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|435851859|ref|YP_007313445.1| - 0.0073 16.0 0.0 0.015 15.0 0.0 1.6 1 1 0 1 1 1 1 Sigma-70, region 4 Cro PF09048.10 gi|435851859|ref|YP_007313445.1| - 0.015 15.3 0.1 0.023 14.7 0.1 1.4 1 0 0 1 1 1 0 Cro HTH_37 PF13744.6 gi|435851859|ref|YP_007313445.1| - 0.025 14.5 0.2 0.05 13.6 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|435851859|ref|YP_007313445.1| - 0.029 14.5 0.0 0.049 13.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain P22_Cro PF14549.6 gi|435851859|ref|YP_007313445.1| - 0.064 13.1 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_19 PF12844.7 gi|435851859|ref|YP_007313445.1| - 0.074 13.1 0.0 0.11 12.6 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain Cdd1 PF11731.8 gi|435851859|ref|YP_007313445.1| - 0.077 13.2 0.0 0.56 10.5 0.0 1.9 1 1 1 2 2 2 0 Pathogenicity locus HTH_24 PF13412.6 gi|435851859|ref|YP_007313445.1| - 0.085 12.4 0.3 0.33 10.5 0.0 2.1 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_Tnp_1 PF01527.20 gi|435851859|ref|YP_007313445.1| - 0.14 12.5 0.0 0.2 12.0 0.0 1.2 1 0 0 1 1 1 0 Transposase HTH_1 PF00126.27 gi|435851859|ref|YP_007313445.1| - 0.17 11.9 0.1 0.27 11.2 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family RELT PF12606.8 gi|435851859|ref|YP_007313445.1| - 0.17 10.9 0.7 5.8 6.0 0.0 2.2 2 0 0 2 2 2 0 Tumour necrosis factor receptor superfamily member 19 Glycos_transf_2 PF00535.26 gi|435851860|ref|YP_007313446.1| - 3.9e-44 150.4 0.0 2.3e-25 89.3 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|435851860|ref|YP_007313446.1| - 8.8e-12 45.4 0.0 1.4e-07 31.7 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|435851860|ref|YP_007313446.1| - 1.4e-08 34.6 0.0 1.5e-05 24.6 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|435851860|ref|YP_007313446.1| - 4.9e-08 33.4 0.0 0.014 15.9 0.0 2.3 2 0 0 2 2 2 2 Glycosyl transferase family 2 VMA21 PF09446.10 gi|435851860|ref|YP_007313446.1| - 0.015 15.4 1.2 0.045 13.9 1.2 1.8 1 1 0 1 1 1 0 VMA21-like domain Polysacc_deac_1 PF01522.21 gi|435851861|ref|YP_007313447.1| - 1.7e-24 86.1 0.0 4.1e-20 71.9 0.0 2.2 2 0 0 2 2 2 2 Polysaccharide deacetylase DUF3473 PF11959.8 gi|435851861|ref|YP_007313447.1| - 7.3e-10 39.0 0.0 2.5e-09 37.3 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF3473) DUF2334 PF10096.9 gi|435851861|ref|YP_007313447.1| - 3.4e-05 23.6 0.0 0.0002 21.1 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2334) Glyco_hydro_57 PF03065.15 gi|435851861|ref|YP_007313447.1| - 0.00098 18.4 0.1 0.0048 16.1 0.0 2.0 2 1 0 2 2 2 1 Glycosyl hydrolase family 57 Methyltransf_31 PF13847.6 gi|435851863|ref|YP_007313449.1| - 1.8e-15 57.0 0.0 2.3e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|435851863|ref|YP_007313449.1| - 6.2e-14 52.5 0.0 1e-13 51.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435851863|ref|YP_007313449.1| - 6.7e-11 42.7 0.0 1.2e-10 41.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|435851863|ref|YP_007313449.1| - 6.2e-10 39.2 0.0 1.4e-09 38.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|435851863|ref|YP_007313449.1| - 1.2e-08 35.0 0.0 1.7e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|435851863|ref|YP_007313449.1| - 1.6e-08 35.2 0.0 2.5e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|435851863|ref|YP_007313449.1| - 7.2e-08 32.2 0.0 1.5e-07 31.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|435851863|ref|YP_007313449.1| - 1.3e-07 31.2 0.0 2.2e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.13 gi|435851863|ref|YP_007313449.1| - 1.2e-06 28.1 0.0 1.6e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|435851863|ref|YP_007313449.1| - 1.3e-05 25.2 0.0 2.1e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|435851863|ref|YP_007313449.1| - 2.2e-05 23.9 0.1 2.8e-05 23.6 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.20 gi|435851863|ref|YP_007313449.1| - 6.7e-05 22.1 0.0 8e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase NodS PF05401.11 gi|435851863|ref|YP_007313449.1| - 0.00012 21.8 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|435851863|ref|YP_007313449.1| - 0.00025 21.1 0.0 0.00064 19.7 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain CheR PF01739.18 gi|435851863|ref|YP_007313449.1| - 0.00028 20.4 0.1 0.18 11.3 0.0 2.7 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain Methyltransf_15 PF09445.10 gi|435851863|ref|YP_007313449.1| - 0.0032 17.1 0.1 0.0077 15.8 0.0 1.7 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_16 PF10294.9 gi|435851863|ref|YP_007313449.1| - 0.0049 16.6 0.0 0.0076 16.0 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_5 PF01795.19 gi|435851863|ref|YP_007313449.1| - 0.0057 16.2 0.0 0.0093 15.5 0.0 1.3 1 0 0 1 1 1 1 MraW methylase family CMAS PF02353.20 gi|435851863|ref|YP_007313449.1| - 0.035 13.4 0.0 0.045 13.0 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF3025 PF11227.8 gi|435851863|ref|YP_007313449.1| - 0.082 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3025) DUF938 PF06080.12 gi|435851863|ref|YP_007313449.1| - 0.17 11.6 0.0 0.22 11.3 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF938) DUF354 PF04007.12 gi|435851864|ref|YP_007313450.1| - 2.8e-12 46.4 0.0 3.2e-12 46.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Epimerase_2 PF02350.19 gi|435851865|ref|YP_007313451.1| - 4.4e-114 381.0 0.0 5.3e-114 380.7 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.12 gi|435851865|ref|YP_007313451.1| - 0.027 13.6 0.1 0.042 12.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF354) MGDG_synth PF06925.11 gi|435851865|ref|YP_007313451.1| - 0.04 14.0 0.0 3.5 7.7 0.0 2.6 3 0 0 3 3 3 0 Monogalactosyldiacylglycerol (MGDG) synthase Polysacc_deac_1 PF01522.21 gi|435851866|ref|YP_007313452.1| - 0.0038 17.1 0.0 0.0087 16.0 0.0 1.6 1 1 0 1 1 1 1 Polysaccharide deacetylase Glycos_transf_1 PF00534.20 gi|435851867|ref|YP_007313453.1| - 5.8e-35 120.4 0.0 1.9e-34 118.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|435851867|ref|YP_007313453.1| - 7.5e-28 97.6 0.0 1.5e-27 96.6 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|435851867|ref|YP_007313453.1| - 1e-16 61.4 0.0 2.2e-16 60.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|435851867|ref|YP_007313453.1| - 1.4e-08 35.4 0.0 2e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|435851867|ref|YP_007313453.1| - 1.6e-07 31.4 0.1 1.4e-06 28.4 0.0 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|435851867|ref|YP_007313453.1| - 2.7e-06 27.7 0.0 0.00017 21.9 0.0 2.8 3 0 0 3 3 3 1 Glycosyl transferases group 1 DUF3492 PF11997.8 gi|435851867|ref|YP_007313453.1| - 0.011 15.5 0.0 0.038 13.7 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF3492) YidD PF01809.18 gi|435851867|ref|YP_007313453.1| - 0.062 13.2 0.1 0.12 12.2 0.1 1.5 1 0 0 1 1 1 0 Putative membrane protein insertion efficiency factor Hexapep_2 PF14602.6 gi|435851868|ref|YP_007313454.1| - 3.8e-06 26.5 7.5 0.00031 20.4 2.8 2.4 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.24 gi|435851868|ref|YP_007313454.1| - 1.8e-05 24.2 10.0 0.00012 21.6 2.2 2.3 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep PF00132.24 gi|435851869|ref|YP_007313455.1| - 7.4e-15 54.0 18.4 4.1e-06 26.3 0.9 4.9 4 1 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|435851869|ref|YP_007313455.1| - 0.00057 19.6 15.2 0.017 14.8 2.3 3.3 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase DUF188 PF02639.14 gi|435851869|ref|YP_007313455.1| - 0.025 14.3 0.0 0.046 13.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 Fucokinase PF07959.12 gi|435851869|ref|YP_007313455.1| - 0.026 13.5 0.9 0.18 10.7 0.6 1.9 1 1 1 2 2 2 0 L-fucokinase TrmB PF01978.19 gi|435851870|ref|YP_007313456.1| - 7.2e-06 25.8 0.0 9e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|435851870|ref|YP_007313456.1| - 4.2e-05 23.6 0.2 0.00028 20.9 0.1 1.8 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.6 gi|435851870|ref|YP_007313456.1| - 7.2e-05 22.7 0.1 9.4e-05 22.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|435851870|ref|YP_007313456.1| - 9.8e-05 21.8 0.0 0.00016 21.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|435851870|ref|YP_007313456.1| - 0.0001 22.2 0.1 0.00025 20.9 0.0 1.7 2 0 0 2 2 2 1 MarR family Replic_Relax PF13814.6 gi|435851870|ref|YP_007313456.1| - 0.0012 19.0 0.0 0.0013 18.8 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation HTH_36 PF13730.6 gi|435851870|ref|YP_007313456.1| - 0.0012 18.7 0.0 0.002 18.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|435851870|ref|YP_007313456.1| - 0.0014 18.5 0.0 0.0018 18.1 0.0 1.2 1 0 0 1 1 1 1 MarR family DUF505 PF04458.12 gi|435851870|ref|YP_007313456.1| - 0.0016 16.9 0.1 0.0016 16.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) FeoC PF09012.10 gi|435851870|ref|YP_007313456.1| - 0.0018 18.3 0.0 0.0029 17.6 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator Phage_rep_org_N PF09681.10 gi|435851870|ref|YP_007313456.1| - 0.0023 17.8 0.1 0.0035 17.3 0.1 1.4 1 1 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_34 PF13601.6 gi|435851870|ref|YP_007313456.1| - 0.0025 18.0 0.1 0.0033 17.6 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|435851870|ref|YP_007313456.1| - 0.0025 18.2 0.0 0.0036 17.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Ribosomal_S19e PF01090.19 gi|435851870|ref|YP_007313456.1| - 0.0034 17.1 0.0 0.0038 16.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_20 PF12840.7 gi|435851870|ref|YP_007313456.1| - 0.0036 17.3 0.1 0.0042 17.1 0.1 1.3 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|435851870|ref|YP_007313456.1| - 0.0062 16.5 0.0 0.007 16.3 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HxlR PF01638.17 gi|435851870|ref|YP_007313456.1| - 0.0083 16.0 0.0 0.012 15.4 0.0 1.4 1 1 0 1 1 1 1 HxlR-like helix-turn-helix DUF4364 PF14277.6 gi|435851870|ref|YP_007313456.1| - 0.016 14.9 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_5 PF01022.20 gi|435851870|ref|YP_007313456.1| - 0.027 14.3 0.1 0.038 13.8 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|435851870|ref|YP_007313456.1| - 0.038 14.0 0.0 0.047 13.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family B-block_TFIIIC PF04182.12 gi|435851870|ref|YP_007313456.1| - 0.056 13.6 0.0 0.081 13.1 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_11 PF08279.12 gi|435851870|ref|YP_007313456.1| - 0.12 12.3 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 HTH domain OrfB_IS605 PF01385.19 gi|435851871|ref|YP_007313457.1| - 2.6e-25 89.0 1.2 4.5e-25 88.2 0.1 2.0 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|435851871|ref|YP_007313457.1| - 1e-22 79.8 0.9 2.7e-22 78.5 0.1 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|435851871|ref|YP_007313457.1| - 2.3e-16 59.0 2.5 5.3e-16 57.8 2.5 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|435851871|ref|YP_007313457.1| - 0.026 14.6 0.3 0.047 13.7 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon RuvC_1 PF18516.1 gi|435851871|ref|YP_007313457.1| - 0.032 13.4 0.4 0.1 11.8 0.4 1.9 1 1 0 1 1 1 0 RuvC nuclease domain DUF4028 PF13220.6 gi|435851871|ref|YP_007313457.1| - 0.049 13.4 0.6 0.58 10.0 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4028) TF_Zn_Ribbon PF08271.12 gi|435851871|ref|YP_007313457.1| - 0.067 12.7 0.5 0.19 11.3 0.0 1.9 2 0 0 2 2 2 0 TFIIB zinc-binding ParD PF09386.10 gi|435851871|ref|YP_007313457.1| - 0.21 12.0 0.9 4.1 7.9 0.0 2.6 2 0 0 2 2 2 0 Antitoxin ParD TMF_TATA_bd PF12325.8 gi|435851871|ref|YP_007313457.1| - 7.5 6.8 7.4 3.7 7.8 1.1 2.8 3 0 0 3 3 3 0 TATA element modulatory factor 1 TATA binding Catalase PF00199.19 gi|435851872|ref|YP_007313458.1| - 1.4e-188 626.8 0.2 1.6e-188 626.6 0.2 1.0 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.12 gi|435851872|ref|YP_007313458.1| - 5.2e-21 74.6 0.0 1e-20 73.7 0.0 1.5 1 0 0 1 1 1 1 Catalase-related immune-responsive AhpC-TSA PF00578.21 gi|435851873|ref|YP_007313459.1| - 1.4e-33 115.4 0.1 1.9e-33 115.0 0.1 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|435851873|ref|YP_007313459.1| - 7.6e-15 54.9 0.0 9.7e-15 54.6 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|435851873|ref|YP_007313459.1| - 1.4e-13 50.5 0.7 9.2e-13 47.8 0.5 2.2 2 0 0 2 2 2 1 C-terminal domain of 1-Cys peroxiredoxin P_C10 PF14974.6 gi|435851873|ref|YP_007313459.1| - 0.0038 17.3 0.1 0.0076 16.3 0.1 1.5 1 0 0 1 1 1 1 Protein C10 FUR PF01475.19 gi|435851874|ref|YP_007313460.1| - 6.8e-31 106.9 0.1 7.9e-31 106.7 0.1 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family PadR PF03551.14 gi|435851874|ref|YP_007313460.1| - 0.006 16.5 0.1 0.0098 15.8 0.1 1.4 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family Penicillinase_R PF03965.16 gi|435851874|ref|YP_007313460.1| - 0.013 15.8 0.0 0.017 15.5 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor HTH_20 PF12840.7 gi|435851874|ref|YP_007313460.1| - 0.014 15.5 0.0 0.02 14.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain SR1P PF13790.6 gi|435851874|ref|YP_007313460.1| - 0.014 15.5 2.9 1.4 9.1 0.2 2.3 2 0 0 2 2 2 0 SR1 protein DUF2250 PF10007.9 gi|435851874|ref|YP_007313460.1| - 0.025 14.7 0.0 0.035 14.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) zf-trcl PF13451.6 gi|435851874|ref|YP_007313460.1| - 0.033 14.1 0.5 1.3 8.9 0.1 2.2 2 0 0 2 2 2 0 Probable zinc-ribbon domain TrmB PF01978.19 gi|435851874|ref|YP_007313460.1| - 0.034 14.0 0.0 0.054 13.4 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|435851874|ref|YP_007313460.1| - 0.084 12.8 0.0 0.48 10.4 0.0 2.0 1 1 0 1 1 1 0 HTH domain HTH_5 PF01022.20 gi|435851874|ref|YP_007313460.1| - 0.092 12.6 0.0 0.53 10.2 0.0 2.0 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Rubredoxin_2 PF18073.1 gi|435851874|ref|YP_007313460.1| - 0.25 11.1 1.1 2.6 7.9 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain Exo_endo_phos PF03372.23 gi|435851875|ref|YP_007313461.1| - 6.2e-23 81.5 0.0 7.5e-23 81.3 0.0 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|435851875|ref|YP_007313461.1| - 2.6e-06 27.2 0.0 9.7e-06 25.4 0.0 1.9 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase SGT1 PF07093.11 gi|435851875|ref|YP_007313461.1| - 0.058 11.8 0.0 0.081 11.4 0.0 1.1 1 0 0 1 1 1 0 SGT1 protein LDcluster4 PF18306.1 gi|435851876|ref|YP_007313462.1| - 3e-44 150.4 6.6 3.5e-44 150.2 6.6 1.0 1 0 0 1 1 1 1 SLOG cluster4 family DNA_processg_A PF02481.15 gi|435851876|ref|YP_007313462.1| - 6.7e-09 35.3 3.6 7.8e-06 25.3 0.6 2.0 1 1 1 2 2 2 2 DNA recombination-mediator protein A Lysine_decarbox PF03641.14 gi|435851876|ref|YP_007313462.1| - 1.7e-06 28.2 0.2 2.5e-06 27.6 0.2 1.3 1 0 0 1 1 1 1 Possible lysine decarboxylase Ribo_biogen_C PF04034.13 gi|435851877|ref|YP_007313463.1| - 2e-46 156.9 0.0 2.4e-46 156.6 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|435851877|ref|YP_007313463.1| - 1.1e-13 50.8 0.7 1.6e-13 50.2 0.7 1.2 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI RNA_Me_trans PF04252.13 gi|435851877|ref|YP_007313463.1| - 0.075 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Predicted SAM-dependent RNA methyltransferase AAA_31 PF13614.6 gi|435851878|ref|YP_007313464.1| - 3.1e-18 66.3 0.2 5.1e-18 65.6 0.2 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|435851878|ref|YP_007313464.1| - 7.1e-16 58.4 0.1 1.1e-15 57.8 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|435851878|ref|YP_007313464.1| - 1.3e-15 57.6 3.7 3.4e-14 52.9 3.7 2.3 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|435851878|ref|YP_007313464.1| - 3.7e-11 43.0 0.0 1.7e-10 40.8 0.0 1.8 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|435851878|ref|YP_007313464.1| - 2.3e-08 33.8 0.1 5.6e-05 22.7 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|435851878|ref|YP_007313464.1| - 3.7e-05 23.1 0.3 0.00016 21.1 0.3 1.8 1 1 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.6 gi|435851878|ref|YP_007313464.1| - 0.00015 21.4 0.0 0.00024 20.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|435851878|ref|YP_007313464.1| - 0.00017 20.9 0.3 0.003 16.8 0.2 2.3 2 1 1 3 3 3 1 Anion-transporting ATPase CLP1_P PF16575.5 gi|435851878|ref|YP_007313464.1| - 0.1 12.4 0.2 0.5 10.1 0.1 2.1 1 1 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop ParD PF09386.10 gi|435851878|ref|YP_007313464.1| - 0.13 12.7 0.0 0.32 11.4 0.0 1.6 1 0 0 1 1 1 0 Antitoxin ParD AAA_24 PF13479.6 gi|435851878|ref|YP_007313464.1| - 0.14 11.9 0.2 0.27 10.9 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_26 PF13500.6 gi|435851878|ref|YP_007313464.1| - 0.19 11.5 1.5 0.39 10.5 0.0 2.2 2 1 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|435851879|ref|YP_007313465.1| - 3.6e-50 170.5 0.1 8.7e-50 169.3 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|435851879|ref|YP_007313465.1| - 0.022 14.5 0.1 0.05 13.3 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|435851879|ref|YP_007313465.1| - 0.056 14.0 0.3 0.3 11.6 0.0 2.4 3 0 0 3 3 3 0 ABC transporter AAA_7 PF12775.7 gi|435851879|ref|YP_007313465.1| - 0.067 12.7 0.0 0.19 11.2 0.0 1.8 1 0 0 1 1 1 0 P-loop containing dynein motor region Peptidase_M24_C PF16188.5 gi|435851879|ref|YP_007313465.1| - 0.086 12.9 1.9 0.27 11.4 1.9 1.8 1 0 0 1 1 1 0 C-terminal region of peptidase_M24 DUF2294 PF10057.9 gi|435851879|ref|YP_007313465.1| - 0.11 12.7 1.2 0.26 11.4 1.2 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2294) AAA_23 PF13476.6 gi|435851879|ref|YP_007313465.1| - 0.39 11.2 0.0 0.39 11.2 0.0 3.1 3 1 0 3 3 3 0 AAA domain T2SSF PF00482.23 gi|435851880|ref|YP_007313466.1| - 4.5e-15 55.7 3.6 1.3e-14 54.2 0.1 2.8 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F Phage_holin_3_6 PF07332.11 gi|435851880|ref|YP_007313466.1| - 5.1 7.2 9.0 3.7 7.6 1.6 2.4 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2721 PF11026.8 gi|435851880|ref|YP_007313466.1| - 5.5 6.9 7.7 43 4.0 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) T2SSF PF00482.23 gi|435851881|ref|YP_007313467.1| - 1.2e-21 77.0 3.5 2.2e-21 76.1 3.5 1.5 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F Fumerase_C PF05683.12 gi|435851882|ref|YP_007313468.1| - 8.6e-42 142.8 0.0 9.5e-42 142.7 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus DUF2190 PF09956.9 gi|435851882|ref|YP_007313468.1| - 0.24 11.9 1.1 0.84 10.1 0.6 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2190) Fumerase PF05681.14 gi|435851883|ref|YP_007313469.1| - 4.4e-98 328.0 0.0 5.5e-98 327.7 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) DBI_PRT PF02277.17 gi|435851883|ref|YP_007313469.1| - 0.0057 15.9 0.1 0.28 10.4 0.1 2.1 2 0 0 2 2 2 2 Phosphoribosyltransferase Peptidase_M50 PF02163.22 gi|435851884|ref|YP_007313470.1| - 6.2e-23 81.4 0.0 1.5e-22 80.1 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|435851884|ref|YP_007313470.1| - 1.5e-12 47.7 0.0 1.8e-06 28.2 0.0 2.4 1 1 1 2 2 2 2 PDZ domain PDZ_6 PF17820.1 gi|435851884|ref|YP_007313470.1| - 1.9e-09 37.2 0.0 9.7e-07 28.5 0.0 2.4 2 0 0 2 2 2 2 PDZ domain PDZ PF00595.24 gi|435851884|ref|YP_007313470.1| - 1.3e-07 31.8 0.1 4.6e-06 26.9 0.0 2.4 2 0 0 2 2 2 1 PDZ domain PDZ_1 PF12812.7 gi|435851884|ref|YP_007313470.1| - 0.079 13.0 0.0 0.75 9.8 0.0 2.3 2 0 0 2 2 2 0 PDZ-like domain TauE PF01925.19 gi|435851885|ref|YP_007313471.1| - 5.7e-43 147.2 38.1 6.8e-43 147.0 38.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE SfsA PF03749.13 gi|435851886|ref|YP_007313472.1| - 2.5e-42 144.0 0.0 3.4e-42 143.6 0.0 1.2 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|435851886|ref|YP_007313472.1| - 1.3e-20 73.3 0.0 2.9e-20 72.2 0.0 1.6 1 0 0 1 1 1 1 SfsA N-terminal OB domain TPP_enzyme_C PF02775.21 gi|435851887|ref|YP_007313473.1| - 5.1e-19 68.6 0.0 8e-19 67.9 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|435851888|ref|YP_007313474.1| - 2e-13 50.3 0.1 2.5e-13 50.0 0.1 1.0 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR_N PF01855.19 gi|435851888|ref|YP_007313474.1| - 0.0061 16.3 0.9 0.01 15.6 0.9 1.4 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Orbi_VP7 PF00897.17 gi|435851888|ref|YP_007313474.1| - 0.051 12.5 0.1 0.055 12.4 0.1 1.2 1 0 0 1 1 1 0 Orbivirus inner capsid protein VP7 Cas_Cmr5 PF09701.10 gi|435851888|ref|YP_007313474.1| - 0.094 13.0 0.1 2.4 8.5 0.0 2.1 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Cmr5) HipN PF18253.1 gi|435851888|ref|YP_007313474.1| - 0.17 11.6 0.1 0.44 10.3 0.1 1.6 1 0 0 1 1 1 0 Hsp70-interacting protein N N-terminal domain FeS PF04060.13 gi|435851889|ref|YP_007313475.1| - 2.3e-10 39.9 0.8 5.6e-10 38.7 0.8 1.7 1 0 0 1 1 1 1 Putative Fe-S cluster cobW PF02492.19 gi|435851890|ref|YP_007313476.1| - 1.6e-11 44.2 0.0 3.1e-11 43.2 0.0 1.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|435851890|ref|YP_007313476.1| - 0.00053 20.4 0.0 0.00088 19.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|435851890|ref|YP_007313476.1| - 0.012 14.8 0.0 0.018 14.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DUF2075 PF09848.9 gi|435851890|ref|YP_007313476.1| - 0.016 14.4 0.0 0.02 14.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|435851890|ref|YP_007313476.1| - 0.031 14.0 0.0 0.043 13.5 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.6 gi|435851890|ref|YP_007313476.1| - 0.031 14.8 0.1 0.067 13.7 0.1 1.5 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|435851890|ref|YP_007313476.1| - 0.065 12.6 0.1 0.1 12.0 0.1 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family KTI12 PF08433.10 gi|435851890|ref|YP_007313476.1| - 0.08 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DnaB_C PF03796.15 gi|435851890|ref|YP_007313476.1| - 0.094 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain MeaB PF03308.16 gi|435851890|ref|YP_007313476.1| - 0.097 11.6 0.1 5.6 5.9 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_11 PF13086.6 gi|435851890|ref|YP_007313476.1| - 0.11 12.2 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|435851890|ref|YP_007313476.1| - 0.14 12.5 0.0 0.21 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|435851890|ref|YP_007313476.1| - 0.17 11.5 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain GvpD PF07088.11 gi|435851890|ref|YP_007313476.1| - 0.22 10.1 0.0 0.29 9.7 0.0 1.1 1 0 0 1 1 1 0 GvpD gas vesicle protein ABC_tran PF00005.27 gi|435851891|ref|YP_007313477.1| - 6.7e-13 49.3 0.0 9.9e-13 48.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435851891|ref|YP_007313477.1| - 7e-09 35.9 1.3 0.00019 21.4 0.0 2.7 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|435851891|ref|YP_007313477.1| - 8.1e-06 25.5 0.1 1.7e-05 24.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|435851891|ref|YP_007313477.1| - 6.4e-05 23.4 0.1 0.00013 22.4 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|435851891|ref|YP_007313477.1| - 9.4e-05 22.7 0.3 0.00088 19.6 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|435851891|ref|YP_007313477.1| - 0.00014 21.6 0.0 0.00023 20.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|435851891|ref|YP_007313477.1| - 0.00027 21.5 0.0 0.00042 20.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|435851891|ref|YP_007313477.1| - 0.00064 19.2 0.1 0.1 12.0 0.1 2.2 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain NTPase_1 PF03266.15 gi|435851891|ref|YP_007313477.1| - 0.0022 17.9 0.6 1.5 8.7 0.0 2.2 2 0 0 2 2 2 2 NTPase AAA_14 PF13173.6 gi|435851891|ref|YP_007313477.1| - 0.0052 16.8 0.3 0.25 11.4 0.0 2.4 2 1 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|435851891|ref|YP_007313477.1| - 0.013 15.4 0.2 0.25 11.2 0.0 2.1 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|435851891|ref|YP_007313477.1| - 0.014 15.3 0.1 0.031 14.2 0.1 1.6 1 0 0 1 1 1 0 RsgA GTPase NB-ARC PF00931.22 gi|435851891|ref|YP_007313477.1| - 0.024 13.8 0.0 0.048 12.8 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|435851891|ref|YP_007313477.1| - 0.03 14.9 0.0 0.054 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|435851891|ref|YP_007313477.1| - 0.044 13.9 0.1 0.19 11.8 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase Adeno_IVa2 PF02456.15 gi|435851891|ref|YP_007313477.1| - 0.048 12.4 0.0 0.063 12.1 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein cobW PF02492.19 gi|435851891|ref|YP_007313477.1| - 0.058 13.0 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|435851891|ref|YP_007313477.1| - 0.12 12.8 0.1 0.31 11.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|435851891|ref|YP_007313477.1| - 0.13 12.4 0.0 0.3 11.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|435851891|ref|YP_007313477.1| - 0.13 12.3 0.0 2.4 8.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) PALP PF00291.25 gi|435851892|ref|YP_007313478.1| - 4.3e-29 101.9 0.1 5.4e-29 101.5 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-ribbon_3 PF13248.6 gi|435851892|ref|YP_007313478.1| - 0.76 9.3 2.2 0.52 9.8 0.4 1.7 2 0 0 2 2 2 0 zinc-ribbon domain POT1 PF02765.17 gi|435851893|ref|YP_007313479.1| - 0.02 14.7 0.3 1.3 8.9 0.1 2.3 2 0 0 2 2 2 0 Telomeric single stranded DNA binding POT1/CDC13 DASH_Dam1 PF08653.10 gi|435851893|ref|YP_007313479.1| - 0.32 10.8 3.2 0.86 9.5 3.2 1.8 1 0 0 1 1 1 0 DASH complex subunit Dam1 DUF3920 PF13058.6 gi|435851893|ref|YP_007313479.1| - 0.36 11.0 2.4 0.29 11.3 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3920) TPR_2 PF07719.17 gi|435851894|ref|YP_007313480.1| - 1.2e-08 34.5 0.2 0.00051 19.9 0.0 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|435851894|ref|YP_007313480.1| - 1.3e-07 32.0 3.6 0.00058 20.3 0.2 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|435851894|ref|YP_007313480.1| - 1.4e-07 31.7 1.5 0.01 16.6 0.1 3.9 2 1 2 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|435851894|ref|YP_007313480.1| - 1.6e-05 24.5 0.2 0.0039 17.0 0.0 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|435851894|ref|YP_007313480.1| - 1.7e-05 25.0 1.0 0.051 13.9 0.2 2.6 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|435851894|ref|YP_007313480.1| - 0.00011 22.8 2.5 0.00097 19.7 0.5 2.2 1 1 1 2 2 2 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|435851894|ref|YP_007313480.1| - 0.00023 21.2 0.1 0.0013 18.8 0.1 2.1 2 0 0 2 2 2 1 Fis1 C-terminal tetratricopeptide repeat TPR_8 PF13181.6 gi|435851894|ref|YP_007313480.1| - 0.00027 20.9 0.8 0.019 15.1 0.0 2.8 3 0 0 3 3 2 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|435851894|ref|YP_007313480.1| - 0.00034 20.8 0.3 0.00054 20.1 0.3 1.3 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|435851894|ref|YP_007313480.1| - 0.00059 20.3 0.3 0.31 11.8 0.0 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|435851894|ref|YP_007313480.1| - 0.0013 17.8 0.0 0.0018 17.3 0.0 1.1 1 0 0 1 1 1 1 NMDA receptor-regulated protein 1 TPR_9 PF13371.6 gi|435851894|ref|YP_007313480.1| - 0.002 18.2 0.1 0.057 13.6 0.1 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|435851894|ref|YP_007313480.1| - 0.011 15.3 1.2 0.25 11.1 0.2 2.8 2 1 1 3 3 3 0 TPR repeat BTAD PF03704.17 gi|435851894|ref|YP_007313480.1| - 0.023 15.1 0.6 0.89 10.0 0.1 2.2 1 1 1 2 2 2 0 Bacterial transcriptional activator domain TPR_10 PF13374.6 gi|435851894|ref|YP_007313480.1| - 0.025 14.4 0.5 1.9 8.5 0.0 3.2 3 0 0 3 3 3 0 Tetratricopeptide repeat MIT PF04212.18 gi|435851894|ref|YP_007313480.1| - 0.029 14.4 0.3 0.96 9.6 0.1 2.9 3 0 0 3 3 3 0 MIT (microtubule interacting and transport) domain Ret2_MD PF18528.1 gi|435851894|ref|YP_007313480.1| - 0.061 13.7 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 RNA editing 3' terminal uridylyl transferase 2 middle domain TPR_7 PF13176.6 gi|435851894|ref|YP_007313480.1| - 0.094 12.8 0.1 2.1 8.5 0.0 2.8 3 0 0 3 3 3 0 Tetratricopeptide repeat ATP-synt_G PF04718.15 gi|435851894|ref|YP_007313480.1| - 0.14 13.0 0.0 0.39 11.6 0.0 1.9 1 0 0 1 1 1 0 Mitochondrial ATP synthase g subunit HAD_2 PF13419.6 gi|435851895|ref|YP_007313481.1| - 2.9e-29 102.4 0.0 3.4e-29 102.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|435851895|ref|YP_007313481.1| - 1.9e-16 61.0 0.0 6.5e-16 59.2 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|435851895|ref|YP_007313481.1| - 0.00031 21.2 0.0 0.0004 20.8 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|435851895|ref|YP_007313481.1| - 0.00052 19.8 0.0 0.0018 18.1 0.0 1.8 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase Hydrolase_like PF13242.6 gi|435851895|ref|YP_007313481.1| - 0.005 16.9 0.0 0.01 15.9 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like NT5C PF06941.12 gi|435851895|ref|YP_007313481.1| - 0.022 14.7 0.0 0.049 13.5 0.0 1.5 1 1 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) CbbQ_C PF08406.10 gi|435851896|ref|YP_007313482.1| - 3.8e-33 113.6 0.0 1.5e-32 111.7 0.0 1.9 2 0 0 2 2 2 1 CbbQ/NirQ/NorQ C-terminal AAA_5 PF07728.14 gi|435851896|ref|YP_007313482.1| - 6.6e-30 103.9 0.0 8.9e-30 103.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_6 PF12774.7 gi|435851896|ref|YP_007313482.1| - 0.0021 17.1 0.0 0.006 15.6 0.0 1.6 2 0 0 2 2 2 1 Hydrolytic ATP binding site of dynein motor region AAA_22 PF13401.6 gi|435851896|ref|YP_007313482.1| - 0.0074 16.6 0.0 0.013 15.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|435851896|ref|YP_007313482.1| - 0.011 15.2 0.0 0.19 11.1 0.0 2.1 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|435851896|ref|YP_007313482.1| - 0.028 14.3 0.0 0.047 13.6 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|435851896|ref|YP_007313482.1| - 0.059 13.1 0.0 0.15 11.7 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA PF00004.29 gi|435851896|ref|YP_007313482.1| - 0.062 13.7 0.0 0.097 13.1 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) VWA_2 PF13519.6 gi|435851897|ref|YP_007313483.1| - 7.7e-06 26.5 0.1 2.1e-05 25.1 0.1 1.8 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|435851897|ref|YP_007313483.1| - 4.3e-05 23.8 0.1 0.00011 22.5 0.1 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain Glyoxalase PF00903.25 gi|435851897|ref|YP_007313483.1| - 0.03 14.5 0.0 0.068 13.4 0.0 1.6 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MtN3_slv PF03083.16 gi|435851899|ref|YP_007313485.1| - 9.4e-10 38.4 1.3 1.2e-09 38.1 1.3 1.2 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange PQ-loop PF04193.14 gi|435851899|ref|YP_007313485.1| - 4e-09 36.1 0.3 4e-09 36.1 0.3 1.5 2 0 0 2 2 2 1 PQ loop repeat LAB_N PF07578.11 gi|435851899|ref|YP_007313485.1| - 0.0024 17.9 0.2 0.0037 17.3 0.1 1.4 1 1 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain zinc_ribbon_6 PF14599.6 gi|435851900|ref|YP_007313486.1| - 0.02 14.9 0.5 0.042 13.9 0.5 1.5 1 1 1 2 2 2 0 Zinc-ribbon zf-dskA_traR PF01258.17 gi|435851900|ref|YP_007313486.1| - 0.18 11.8 4.5 6.8 6.7 0.7 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Prok-JAB PF14464.6 gi|435851901|ref|YP_007313487.1| - 1.3e-09 37.9 0.0 1.6e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|435851901|ref|YP_007313487.1| - 0.012 15.6 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 0 RadC-like JAB domain 4HBT PF03061.22 gi|435851903|ref|YP_007313489.1| - 9.7e-15 54.7 0.4 1.4e-14 54.2 0.4 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|435851903|ref|YP_007313489.1| - 3.9e-09 36.8 0.1 5.3e-09 36.3 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|435851903|ref|YP_007313489.1| - 0.0065 16.8 0.1 0.0083 16.4 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF2099 PF09872.9 gi|435851904|ref|YP_007313490.1| - 1.3e-116 388.3 0.9 1.4e-116 388.1 0.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) AMP-binding_C_2 PF14535.6 gi|435851905|ref|YP_007313491.1| - 2.1e-29 101.6 1.9 4.6e-29 100.6 1.9 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|435851905|ref|YP_007313491.1| - 2.6e-15 56.0 0.0 2.4e-14 52.8 0.0 2.1 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.12 gi|435851905|ref|YP_007313491.1| - 0.0056 15.8 0.0 0.025 13.6 0.0 1.8 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE Peptidase_M1 PF01433.20 gi|435851906|ref|YP_007313492.1| - 5.4e-06 26.1 2.8 7.6e-06 25.7 1.8 1.7 2 0 0 2 2 2 1 Peptidase family M1 domain Peptidase_M66 PF10462.9 gi|435851906|ref|YP_007313492.1| - 0.0077 15.2 0.1 0.012 14.6 0.1 1.3 1 0 0 1 1 1 1 Peptidase M66 23S_rRNA_IVP PF05635.11 gi|435851907|ref|YP_007313493.1| - 0.042 14.1 2.4 0.86 9.9 0.3 2.2 1 1 1 2 2 2 0 23S rRNA-intervening sequence protein DUF515 PF04415.12 gi|435851907|ref|YP_007313493.1| - 0.2 10.0 2.9 0.26 9.6 2.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) DUF432 PF04254.13 gi|435851908|ref|YP_007313494.1| - 3.1e-44 150.1 0.0 4.5e-44 149.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) MS_channel PF00924.18 gi|435851909|ref|YP_007313495.1| - 1.3e-51 175.1 4.8 1.3e-51 175.1 4.8 1.4 2 0 0 2 2 2 1 Mechanosensitive ion channel S-layer PF07752.11 gi|435851910|ref|YP_007313496.1| - 1.1e-192 637.4 11.6 1.2e-97 326.0 3.6 2.5 2 0 0 2 2 2 2 S-layer protein CARDB PF07705.11 gi|435851910|ref|YP_007313496.1| - 1.4e-08 34.9 2.8 1.4e-08 34.9 2.8 3.7 5 0 0 5 5 4 1 CARDB tRNA-synt_1c_C PF03950.18 gi|435851910|ref|YP_007313496.1| - 5.1e-05 23.2 0.6 0.19 11.6 0.0 3.3 3 0 0 3 3 3 2 tRNA synthetases class I (E and Q), anti-codon binding domain DUF4198 PF10670.9 gi|435851910|ref|YP_007313496.1| - 0.00063 20.2 2.7 0.49 10.7 0.1 3.3 3 0 0 3 3 3 2 Domain of unknown function (DUF4198) CBM60 PF16841.5 gi|435851910|ref|YP_007313496.1| - 0.04 14.3 12.9 0.079 13.4 1.7 5.1 5 1 1 6 6 6 0 Ca-dependent carbohydrate-binding module xylan-binding Cupredoxin_1 PF13473.6 gi|435851910|ref|YP_007313496.1| - 0.048 13.8 3.3 3 8.0 0.2 4.7 4 1 0 4 4 4 0 Cupredoxin-like domain Muraidase PF11860.8 gi|435851910|ref|YP_007313496.1| - 0.17 12.1 0.1 1.3 9.2 0.0 2.1 2 0 0 2 2 2 0 N-acetylmuramidase Fn3-like PF14310.6 gi|435851910|ref|YP_007313496.1| - 0.27 11.4 1.6 0.68 10.1 0.1 2.5 3 0 0 3 3 3 0 Fibronectin type III-like domain DBB PF14545.6 gi|435851910|ref|YP_007313496.1| - 0.3 11.0 7.7 0.38 10.7 0.3 4.0 5 1 1 6 6 6 0 Dof, BCAP, and BANK (DBB) motif, CarboxypepD_reg PF13620.6 gi|435851910|ref|YP_007313496.1| - 1 9.7 15.7 0.052 13.8 1.7 4.7 5 1 0 5 5 5 0 Carboxypeptidase regulatory-like domain LEH PF07858.12 gi|435851910|ref|YP_007313496.1| - 4 7.5 6.2 79 3.4 0.1 4.0 4 0 0 4 4 4 0 Limonene-1,2-epoxide hydrolase catalytic domain E1-E2_ATPase PF00122.20 gi|435851911|ref|YP_007313497.1| - 4.9e-49 166.3 0.2 4.9e-49 166.3 0.2 3.5 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|435851911|ref|YP_007313497.1| - 4e-45 153.8 2.5 4e-45 153.8 2.5 2.6 2 1 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|435851911|ref|YP_007313497.1| - 3.7e-22 79.6 1.9 2.8e-21 76.8 1.9 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|435851911|ref|YP_007313497.1| - 2.8e-17 62.2 0.1 9.6e-17 60.4 0.1 2.0 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|435851911|ref|YP_007313497.1| - 1.5e-16 60.2 0.0 3.9e-16 58.9 0.0 1.7 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|435851911|ref|YP_007313497.1| - 1.3e-10 41.5 3.0 2e-06 27.7 2.9 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|435851911|ref|YP_007313497.1| - 1.7e-05 25.3 0.1 0.00024 21.6 0.0 2.7 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase DUF1772 PF08592.11 gi|435851911|ref|YP_007313497.1| - 0.012 15.9 0.2 0.079 13.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1772) Bac_rhamnosid_N PF08531.10 gi|435851911|ref|YP_007313497.1| - 0.029 14.2 0.0 0.05 13.4 0.0 1.2 1 0 0 1 1 1 0 Alpha-L-rhamnosidase N-terminal domain Zn_peptidase_2 PF04298.12 gi|435851911|ref|YP_007313497.1| - 1.9 7.9 4.1 2 7.7 0.2 2.3 2 0 0 2 2 2 0 Putative neutral zinc metallopeptidase MarC PF01914.17 gi|435851912|ref|YP_007313498.1| - 2.1e-59 200.4 15.9 2.3e-59 200.2 15.9 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein TerC PF03741.16 gi|435851912|ref|YP_007313498.1| - 0.08 12.6 14.6 0.46 10.1 14.1 2.1 1 1 0 1 1 1 0 Integral membrane protein TerC family ThiC_Rad_SAM PF01964.18 gi|435851913|ref|YP_007313499.1| - 2.3e-180 599.8 1.0 2.6e-180 599.7 1.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Topoisom_bac PF01131.20 gi|435851915|ref|YP_007313501.1| - 3.9e-105 352.2 0.4 4.8e-105 351.9 0.4 1.1 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|435851915|ref|YP_007313501.1| - 8e-16 57.5 17.3 8.9e-11 41.4 1.8 3.7 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|435851915|ref|YP_007313501.1| - 2.2e-13 50.3 0.0 2.5e-12 46.9 0.0 2.4 2 0 0 2 2 2 1 Toprim domain DAO_C PF16901.5 gi|435851915|ref|YP_007313501.1| - 0.033 14.1 0.0 0.068 13.0 0.0 1.5 1 0 0 1 1 1 0 C-terminal domain of alpha-glycerophosphate oxidase DUF3022 PF11226.8 gi|435851915|ref|YP_007313501.1| - 0.069 13.6 0.2 0.16 12.4 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3022) Tic110 PF16940.5 gi|435851915|ref|YP_007313501.1| - 0.15 10.5 0.1 1.3 7.4 0.0 2.0 2 0 0 2 2 2 0 Chloroplast envelope transporter Exonuc_VII_S PF02609.16 gi|435851915|ref|YP_007313501.1| - 0.3 11.2 1.7 0.38 10.9 0.2 2.0 2 0 0 2 2 2 0 Exonuclease VII small subunit Nitroreductase PF00881.24 gi|435851916|ref|YP_007313502.1| - 1.6e-30 106.4 0.9 3.5e-17 63.0 0.0 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|435851916|ref|YP_007313502.1| - 3.5e-15 56.1 0.9 2.8e-05 23.8 0.0 3.0 1 1 1 3 3 3 3 Putative TM nitroreductase Entericidin PF08085.11 gi|435851916|ref|YP_007313502.1| - 0.17 12.0 0.1 0.3 11.2 0.1 1.4 1 0 0 1 1 1 0 Entericidin EcnA/B family IlvN PF07991.12 gi|435851917|ref|YP_007313503.1| - 3.1e-77 257.8 0.8 4.4e-77 257.3 0.8 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|435851917|ref|YP_007313503.1| - 2.2e-61 206.3 0.2 3.9e-61 205.6 0.2 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 gi|435851917|ref|YP_007313503.1| - 1.8e-07 30.7 0.0 3.3e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|435851917|ref|YP_007313503.1| - 3.6e-07 30.5 0.0 7e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|435851917|ref|YP_007313503.1| - 3.8e-06 27.4 0.0 8.4e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 gi|435851917|ref|YP_007313503.1| - 1.6e-05 25.0 0.0 2.9e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Oxidored_nitro PF00148.19 gi|435851917|ref|YP_007313503.1| - 0.0038 16.0 0.1 0.0087 14.8 0.0 1.6 2 0 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase ApbA PF02558.16 gi|435851917|ref|YP_007313503.1| - 0.015 15.0 0.1 0.027 14.1 0.1 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Mur_ligase PF01225.25 gi|435851917|ref|YP_007313503.1| - 0.13 12.6 0.2 0.61 10.5 0.2 2.1 1 1 0 1 1 1 0 Mur ligase family, catalytic domain ALS_ss_C PF10369.9 gi|435851918|ref|YP_007313504.1| - 2.7e-32 110.8 1.8 2.7e-32 110.8 1.8 2.1 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT PF01842.25 gi|435851918|ref|YP_007313504.1| - 1.4e-17 63.1 0.8 6e-17 61.1 0.2 2.1 2 0 0 2 2 2 1 ACT domain ACT_5 PF13710.6 gi|435851918|ref|YP_007313504.1| - 2.5e-16 59.2 1.5 4.7e-16 58.4 0.3 2.0 2 1 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|435851918|ref|YP_007313504.1| - 9.2e-06 26.2 0.7 9.2e-06 26.2 0.7 1.9 2 0 0 2 2 2 1 ACT domain NIL PF09383.10 gi|435851918|ref|YP_007313504.1| - 0.01 15.6 0.1 0.61 10.0 0.0 2.3 2 0 0 2 2 2 0 NIL domain SLS PF14611.6 gi|435851918|ref|YP_007313504.1| - 0.29 10.9 2.5 8.8 6.1 0.4 2.0 1 1 1 2 2 2 0 Mitochondrial inner-membrane-bound regulator TPP_enzyme_N PF02776.18 gi|435851919|ref|YP_007313505.1| - 6.7e-60 201.6 0.1 2.4e-58 196.6 0.0 2.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|435851919|ref|YP_007313505.1| - 5.4e-56 188.6 0.0 2.6e-55 186.4 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|435851919|ref|YP_007313505.1| - 7.6e-52 174.7 0.1 1.2e-51 174.0 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 gi|435851919|ref|YP_007313505.1| - 0.041 13.6 1.1 0.081 12.7 1.1 1.7 1 1 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HMGL-like PF00682.19 gi|435851920|ref|YP_007313506.1| - 8.5e-80 268.1 0.6 1.6e-79 267.2 0.6 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|435851920|ref|YP_007313506.1| - 2.5e-37 127.8 1.1 5e-37 126.8 1.1 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain IMPDH PF00478.25 gi|435851920|ref|YP_007313506.1| - 0.00084 18.4 2.2 0.0014 17.7 2.2 1.3 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain Peptidase_M42 PF05343.14 gi|435851921|ref|YP_007313507.1| - 2.1e-113 378.2 2.9 2.6e-113 377.9 2.9 1.1 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|435851921|ref|YP_007313507.1| - 1e-11 44.9 0.2 1.8e-11 44.1 0.2 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|435851921|ref|YP_007313507.1| - 2.3e-06 27.4 0.1 1.1e-05 25.2 0.0 2.1 2 1 0 2 2 2 1 Peptidase family M28 VATC PF18716.1 gi|435851922|ref|YP_007313508.1| - 0.15 11.9 2.9 0.31 10.9 2.9 1.5 1 1 0 1 1 1 0 Vms1-associating treble clef domain GDP_Man_Dehyd PF16363.5 gi|435851923|ref|YP_007313509.1| - 1.7e-63 215.1 0.0 3.9e-63 213.9 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|435851923|ref|YP_007313509.1| - 3.9e-59 200.0 0.0 4.5e-59 199.8 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|435851923|ref|YP_007313509.1| - 1.2e-20 73.7 0.0 1.5e-20 73.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|435851923|ref|YP_007313509.1| - 1.1e-17 64.2 0.1 1.8e-16 60.1 0.1 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|435851923|ref|YP_007313509.1| - 3.1e-17 62.6 0.0 4.6e-17 62.0 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|435851923|ref|YP_007313509.1| - 2e-14 53.4 0.0 2.9e-13 49.6 0.0 2.3 1 1 1 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|435851923|ref|YP_007313509.1| - 9.2e-08 32.2 0.0 2.2e-07 31.0 0.0 1.6 2 0 0 2 2 2 1 NAD(P)H-binding TrkA_N PF02254.18 gi|435851923|ref|YP_007313509.1| - 0.00023 21.4 0.2 0.0011 19.2 0.1 2.1 2 0 0 2 2 2 1 TrkA-N domain KR PF08659.10 gi|435851923|ref|YP_007313509.1| - 0.0031 17.5 0.4 0.25 11.3 0.4 2.2 1 1 0 1 1 1 1 KR domain DapB_N PF01113.20 gi|435851923|ref|YP_007313509.1| - 0.012 15.8 0.1 0.02 15.0 0.1 1.3 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NmrA PF05368.13 gi|435851923|ref|YP_007313509.1| - 0.013 15.1 0.1 3.8 7.0 0.0 2.2 2 0 0 2 2 2 0 NmrA-like family DUF2827 PF10933.8 gi|435851923|ref|YP_007313509.1| - 0.23 10.1 0.0 0.36 9.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2827) UDPG_MGDP_dh_N PF03721.14 gi|435851924|ref|YP_007313510.1| - 7e-35 120.3 0.0 1.2e-34 119.6 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|435851924|ref|YP_007313510.1| - 9.2e-21 73.9 0.1 4.6e-20 71.6 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|435851924|ref|YP_007313510.1| - 1.1e-18 67.6 0.0 2.7e-18 66.3 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|435851924|ref|YP_007313510.1| - 0.0023 18.1 0.1 11 6.1 0.0 3.4 3 0 0 3 3 3 2 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.22 gi|435851925|ref|YP_007313511.1| - 2.1e-28 99.5 0.2 4.1e-28 98.6 0.2 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding PF02629.19 gi|435851925|ref|YP_007313511.1| - 0.00022 21.9 0.5 0.00044 20.9 0.5 1.5 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA_C PF02894.17 gi|435851925|ref|YP_007313511.1| - 0.00037 20.5 0.1 0.00079 19.4 0.1 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.15 gi|435851925|ref|YP_007313511.1| - 0.00048 20.3 0.6 0.00085 19.5 0.5 1.5 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Gp_dh_N PF00044.24 gi|435851925|ref|YP_007313511.1| - 0.0019 18.5 0.1 0.0043 17.4 0.1 1.7 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|435851925|ref|YP_007313511.1| - 0.003 17.7 1.7 0.022 14.9 1.7 2.2 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Shikimate_DH PF01488.20 gi|435851925|ref|YP_007313511.1| - 0.008 16.2 0.4 0.19 11.8 0.1 2.4 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|435851925|ref|YP_007313511.1| - 0.012 15.0 0.1 0.027 13.8 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|435851925|ref|YP_007313511.1| - 0.021 15.4 0.1 0.041 14.5 0.1 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DegT_DnrJ_EryC1 PF01041.17 gi|435851926|ref|YP_007313512.1| - 2.1e-137 458.2 0.9 2.4e-137 458.1 0.9 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|435851926|ref|YP_007313512.1| - 7.2e-09 35.3 0.7 3.8e-08 33.0 0.7 1.9 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|435851926|ref|YP_007313512.1| - 1.3e-07 30.6 0.2 2.1e-07 29.8 0.2 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|435851926|ref|YP_007313512.1| - 1e-06 28.2 0.1 1.8e-06 27.4 0.1 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|435851926|ref|YP_007313512.1| - 5.5e-05 22.3 0.6 0.0007 18.7 0.4 2.0 2 0 0 2 2 2 1 Aminotransferase class-V ComK PF06338.11 gi|435851926|ref|YP_007313512.1| - 0.016 14.8 0.0 0.034 13.8 0.0 1.5 1 0 0 1 1 1 0 ComK protein OKR_DC_1 PF01276.20 gi|435851926|ref|YP_007313512.1| - 0.03 13.1 0.7 0.07 11.9 0.2 1.8 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, major domain Hexapep PF00132.24 gi|435851927|ref|YP_007313513.1| - 9.4e-28 94.9 19.4 2.6e-08 33.3 2.8 5.5 4 1 2 6 6 6 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|435851927|ref|YP_007313513.1| - 8.3e-14 51.0 19.1 2.8e-05 23.8 0.4 5.0 5 0 0 5 5 5 3 Hexapeptide repeat of succinyl-transferase Bactofilin PF04519.13 gi|435851927|ref|YP_007313513.1| - 0.46 10.8 6.8 0.19 12.0 2.9 2.3 2 1 1 3 3 3 0 Polymer-forming cytoskeletal YdjM PF04307.14 gi|435851928|ref|YP_007313514.1| - 3.8e-15 55.6 2.5 4.5e-15 55.4 2.5 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase FixQ PF05545.11 gi|435851928|ref|YP_007313514.1| - 0.16 11.9 0.2 0.16 11.9 0.2 2.4 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ Asn_synthase PF00733.21 gi|435851929|ref|YP_007313515.1| - 0.0087 15.8 0.0 0.065 12.9 0.0 1.9 2 0 0 2 2 2 1 Asparagine synthase Tachystatin_A PF11406.8 gi|435851929|ref|YP_007313515.1| - 0.027 14.5 0.2 0.064 13.3 0.2 1.6 1 0 0 1 1 1 0 Antimicrobial peptide tachystatin A Diphthami_syn_2 PF01902.17 gi|435851929|ref|YP_007313515.1| - 0.067 12.7 0.2 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 Diphthamide synthase CTP_transf_like PF01467.26 gi|435851930|ref|YP_007313516.1| - 4.4e-09 36.7 0.1 1.1e-08 35.4 0.0 1.7 2 0 0 2 2 2 1 Cytidylyltransferase-like DUF749 PF05370.11 gi|435851930|ref|YP_007313516.1| - 0.0031 17.6 0.2 0.027 14.5 0.0 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF749) CENP-M PF11111.8 gi|435851930|ref|YP_007313516.1| - 0.11 11.6 0.1 0.2 10.8 0.1 1.3 1 0 0 1 1 1 0 Centromere protein M (CENP-M) HU-HIG PF18291.1 gi|435851931|ref|YP_007313517.1| - 0.03 14.4 0.0 0.052 13.6 0.0 1.3 1 0 0 1 1 1 0 HU domain fused to wHTH, Ig, or Glycine-rich motif Disaggr_repeat PF06848.11 gi|435851932|ref|YP_007313518.1| - 2.7e-278 913.4 31.9 6.7e-94 312.6 6.2 3.7 3 0 0 3 3 3 3 Disaggregatase related repeat PKD PF00801.20 gi|435851932|ref|YP_007313518.1| - 8.2e-34 115.3 34.6 1.2e-12 47.5 6.8 6.1 4 0 0 4 4 4 3 PKD domain SdrD_B PF17210.3 gi|435851932|ref|YP_007313518.1| - 3.4e-33 114.2 0.3 3.4e-33 114.2 0.3 7.8 11 0 0 11 11 11 1 SdrD B-like domain DUF11 PF01345.18 gi|435851932|ref|YP_007313518.1| - 7.9e-15 54.9 121.8 0.0045 17.3 4.6 15.2 15 1 1 16 16 16 10 Domain of unknown function DUF11 TGFb_propeptide PF00688.18 gi|435851932|ref|YP_007313518.1| - 8.8e-07 28.9 0.0 20 4.8 0.0 5.7 6 0 0 6 6 6 2 TGF-beta propeptide Ub-RnfH PF03658.14 gi|435851932|ref|YP_007313518.1| - 0.0028 18.0 0.8 34 4.9 0.0 3.7 3 0 0 3 3 3 0 RnfH family Ubiquitin ChitinaseA_N PF08329.10 gi|435851932|ref|YP_007313518.1| - 0.25 11.0 8.0 10 5.8 1.3 3.9 3 0 0 3 3 3 0 Chitinase A, N-terminal domain YdjM PF04307.14 gi|435851933|ref|YP_007313519.1| - 1.5e-18 66.7 5.6 2.1e-18 66.2 5.6 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase PsbK PF02533.15 gi|435851933|ref|YP_007313519.1| - 0.028 14.6 1.3 0.088 13.0 1.3 1.8 1 0 0 1 1 1 0 Photosystem II 4 kDa reaction centre component Dus PF01207.17 gi|435851934|ref|YP_007313520.1| - 0.028 13.5 0.0 0.033 13.3 0.0 1.1 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) CoA_binding_2 PF13380.6 gi|435851934|ref|YP_007313520.1| - 0.15 12.5 0.0 0.2 12.1 0.0 1.1 1 0 0 1 1 1 0 CoA binding domain Molydop_binding PF01568.21 gi|435851935|ref|YP_007313521.1| - 2.5e-14 53.2 0.0 3.2e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|435851935|ref|YP_007313521.1| - 5.3e-05 23.3 0.0 7.7e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain TPP_enzyme_M PF00205.22 gi|435851936|ref|YP_007313522.1| - 0.00014 21.6 0.0 0.015 15.0 0.0 2.6 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|435851936|ref|YP_007313522.1| - 0.16 11.7 0.0 0.33 10.7 0.0 1.4 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit FeS PF04060.13 gi|435851937|ref|YP_007313523.1| - 4e-14 52.0 1.4 4e-14 52.0 1.4 2.3 2 0 0 2 2 1 1 Putative Fe-S cluster Fer4 PF00037.27 gi|435851937|ref|YP_007313523.1| - 5.7e-11 41.7 19.5 2.5e-08 33.4 4.2 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435851937|ref|YP_007313523.1| - 4.9e-10 39.4 11.2 1.2e-09 38.1 5.9 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435851937|ref|YP_007313523.1| - 1.6e-08 34.2 20.5 9e-07 28.7 3.0 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435851937|ref|YP_007313523.1| - 6.8e-08 33.0 31.5 1.1e-06 29.2 11.2 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435851937|ref|YP_007313523.1| - 1.3e-07 31.7 25.3 1e-06 28.8 6.6 2.8 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435851937|ref|YP_007313523.1| - 3.6e-06 27.8 13.1 0.0013 19.6 0.9 3.1 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|435851937|ref|YP_007313523.1| - 3.8e-06 26.7 17.3 1.7e-05 24.6 2.1 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|435851937|ref|YP_007313523.1| - 4.6e-05 23.5 13.0 6.9e-05 22.9 1.2 3.2 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435851937|ref|YP_007313523.1| - 9.3e-05 22.7 20.5 0.00027 21.2 2.4 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|435851937|ref|YP_007313523.1| - 9.3e-05 22.8 22.7 0.0036 17.7 6.0 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435851937|ref|YP_007313523.1| - 0.00019 22.1 22.3 0.012 16.5 7.3 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|435851937|ref|YP_007313523.1| - 0.00093 19.9 0.3 0.00093 19.9 0.3 2.6 3 0 0 3 3 2 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|435851937|ref|YP_007313523.1| - 0.0013 19.3 14.3 0.0036 17.8 8.7 3.0 2 1 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|435851937|ref|YP_007313523.1| - 0.02 15.7 0.4 0.02 15.7 0.4 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain YhfH PF14149.6 gi|435851937|ref|YP_007313523.1| - 0.025 14.5 1.4 0.025 14.5 1.4 2.4 2 0 0 2 2 2 0 YhfH-like protein Fer4_17 PF13534.6 gi|435851937|ref|YP_007313523.1| - 0.098 13.2 15.6 0.28 11.7 8.5 3.0 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|435851937|ref|YP_007313523.1| - 1.2 9.4 10.8 0.3 11.3 1.3 2.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain FeThRed_B PF02943.15 gi|435851938|ref|YP_007313524.1| - 7.5e-29 99.9 0.3 9e-29 99.6 0.3 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain ABC_tran PF00005.27 gi|435851940|ref|YP_007313526.1| - 1.1e-32 113.4 0.0 1.6e-32 112.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435851940|ref|YP_007313526.1| - 6.3e-10 39.3 0.0 0.0011 18.9 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|435851940|ref|YP_007313526.1| - 3.5e-08 33.1 0.1 1.2e-07 31.5 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|435851940|ref|YP_007313526.1| - 1.3e-05 25.1 0.0 0.055 13.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.6 gi|435851940|ref|YP_007313526.1| - 0.00014 22.3 0.2 0.00027 21.4 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|435851940|ref|YP_007313526.1| - 0.00017 21.2 0.2 0.054 13.1 0.2 2.4 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|435851940|ref|YP_007313526.1| - 0.0003 20.5 0.1 0.0006 19.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|435851940|ref|YP_007313526.1| - 0.00064 20.0 0.1 0.00064 20.0 0.1 2.1 2 1 0 2 2 1 1 AAA domain IstB_IS21 PF01695.17 gi|435851940|ref|YP_007313526.1| - 0.00071 19.3 0.1 0.073 12.8 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|435851940|ref|YP_007313526.1| - 0.00095 19.7 3.4 0.0099 16.4 0.0 2.5 2 1 1 3 3 2 1 AAA domain AAA_22 PF13401.6 gi|435851940|ref|YP_007313526.1| - 0.0018 18.6 0.1 0.0018 18.6 0.1 2.0 2 1 0 2 2 1 1 AAA domain SbcCD_C PF13558.6 gi|435851940|ref|YP_007313526.1| - 0.0022 18.2 0.1 0.062 13.5 0.1 2.5 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|435851940|ref|YP_007313526.1| - 0.0056 17.2 0.6 0.013 16.0 0.6 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|435851940|ref|YP_007313526.1| - 0.0067 16.3 0.0 0.018 15.0 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase NACHT PF05729.12 gi|435851940|ref|YP_007313526.1| - 0.014 15.4 0.0 0.032 14.1 0.0 1.6 1 0 0 1 1 1 0 NACHT domain FtsK_SpoIIIE PF01580.18 gi|435851940|ref|YP_007313526.1| - 0.016 14.6 0.5 0.043 13.2 0.2 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_30 PF13604.6 gi|435851940|ref|YP_007313526.1| - 0.016 14.9 0.4 0.048 13.4 0.1 1.9 1 1 1 2 2 2 0 AAA domain cobW PF02492.19 gi|435851940|ref|YP_007313526.1| - 0.027 14.1 0.1 0.37 10.4 0.1 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF3584 PF12128.8 gi|435851940|ref|YP_007313526.1| - 0.052 11.1 0.1 0.07 10.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_24 PF13479.6 gi|435851940|ref|YP_007313526.1| - 0.058 13.1 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|435851940|ref|YP_007313526.1| - 0.064 12.4 0.0 0.081 12.1 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.6 gi|435851940|ref|YP_007313526.1| - 0.075 13.2 0.2 0.18 12.0 0.2 1.9 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|435851940|ref|YP_007313526.1| - 0.081 12.3 0.7 0.87 8.9 0.3 2.3 2 1 0 2 2 2 0 KaiC AAA_13 PF13166.6 gi|435851940|ref|YP_007313526.1| - 0.089 11.4 0.0 3.4 6.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|435851940|ref|YP_007313526.1| - 0.11 11.7 0.1 0.2 10.8 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.14 gi|435851940|ref|YP_007313526.1| - 0.11 12.4 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SSE PF00437.20 gi|435851940|ref|YP_007313526.1| - 0.11 11.5 0.1 0.24 10.4 0.1 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.29 gi|435851940|ref|YP_007313526.1| - 0.45 11.0 3.1 3.5 8.0 0.5 2.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) FtsX PF02687.21 gi|435851941|ref|YP_007313527.1| - 1.3e-08 35.2 7.5 1.3e-08 35.2 7.5 3.2 3 0 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|435851941|ref|YP_007313527.1| - 3e-07 31.0 1.5 5.2e-07 30.2 1.5 1.4 1 0 0 1 1 1 1 MacB-like periplasmic core domain SL4P PF17618.2 gi|435851941|ref|YP_007313527.1| - 0.17 12.0 0.1 26 4.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized Strongylid L4 protein CARDB PF07705.11 gi|435851942|ref|YP_007313528.1| - 3.4e-09 36.9 0.3 0.00056 20.1 0.0 3.3 3 0 0 3 3 3 2 CARDB RAMP4 PF06624.12 gi|435851942|ref|YP_007313528.1| - 0.013 15.6 2.7 0.064 13.3 0.1 2.4 2 0 0 2 2 2 0 Ribosome associated membrane protein RAMP4 Filamin PF00630.19 gi|435851942|ref|YP_007313528.1| - 0.019 15.8 0.1 0.66 10.8 0.1 3.1 1 1 0 1 1 1 0 Filamin/ABP280 repeat NPCBM_assoc PF10633.9 gi|435851942|ref|YP_007313528.1| - 0.03 14.6 0.0 5.9 7.2 0.0 2.9 3 0 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|435851942|ref|YP_007313528.1| - 0.067 13.5 0.3 0.85 10.0 0.0 2.9 3 2 0 3 3 3 0 Domain of unknown function DUF11 Big_1 PF02369.16 gi|435851942|ref|YP_007313528.1| - 0.12 12.4 0.0 0.37 10.8 0.0 1.9 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) BatD PF13584.6 gi|435851942|ref|YP_007313528.1| - 0.14 11.0 0.4 3.2 6.5 0.0 2.9 3 1 0 3 3 3 0 Oxygen tolerance OppC_N PF12911.7 gi|435851942|ref|YP_007313528.1| - 3.3 7.8 4.9 16 5.6 0.3 2.8 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C Disaggr_repeat PF06848.11 gi|435851943|ref|YP_007313529.1| - 6.1e-89 296.5 6.1 6.1e-89 296.5 6.1 2.7 3 0 0 3 3 3 1 Disaggregatase related repeat Big_1 PF02369.16 gi|435851943|ref|YP_007313529.1| - 5.4e-10 39.1 8.7 5.4e-10 39.1 8.7 3.4 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 1) TGFb_propeptide PF00688.18 gi|435851943|ref|YP_007313529.1| - 0.0034 17.2 0.0 1.4 8.6 0.0 2.2 2 0 0 2 2 2 2 TGF-beta propeptide Invasin_D3 PF09134.10 gi|435851943|ref|YP_007313529.1| - 0.0073 16.6 5.1 0.0073 16.6 5.1 3.1 3 0 0 3 3 3 1 Invasin, domain 3 CarboxypepD_reg PF13620.6 gi|435851943|ref|YP_007313529.1| - 0.025 14.9 1.4 0.025 14.9 1.4 2.9 2 1 0 2 2 2 0 Carboxypeptidase regulatory-like domain DUF11 PF01345.18 gi|435851943|ref|YP_007313529.1| - 0.47 10.8 10.6 0.44 10.9 2.3 3.1 2 0 0 2 2 2 0 Domain of unknown function DUF11 MG4 PF17789.1 gi|435851943|ref|YP_007313529.1| - 0.74 10.0 3.0 0.44 10.7 0.6 1.9 2 0 0 2 2 2 0 Macroglobulin domain MG4 ASXH PF13919.6 gi|435851944|ref|YP_007313530.1| - 0.02 14.9 0.0 0.024 14.7 0.0 1.2 1 0 0 1 1 1 0 Asx homology domain NUDIX PF00293.28 gi|435851945|ref|YP_007313531.1| - 1.8e-05 24.8 0.0 2.9e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain KIP1 PF07765.12 gi|435851946|ref|YP_007313532.1| - 0.2 11.8 1.5 29 4.9 0.0 3.3 3 1 1 4 4 4 0 KIP1-like protein CHAT PF12770.7 gi|435851947|ref|YP_007313533.1| - 1.4e-16 60.7 0.0 2.3e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 CHAT domain TPR_2 PF07719.17 gi|435851947|ref|YP_007313533.1| - 0.0034 17.4 2.4 0.64 10.3 0.0 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|435851947|ref|YP_007313533.1| - 0.063 13.6 0.0 5 7.5 0.0 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|435851947|ref|YP_007313533.1| - 0.14 12.0 10.2 0.47 10.4 0.1 3.8 4 0 0 4 4 4 0 Tetratricopeptide repeat E3_binding PF02817.17 gi|435851947|ref|YP_007313533.1| - 0.15 12.4 0.0 0.37 11.2 0.0 1.6 1 0 0 1 1 1 0 e3 binding domain Peptidase_M23 PF01551.22 gi|435851948|ref|YP_007313534.1| - 1.3e-16 60.5 1.5 4e-16 59.0 1.7 1.7 2 0 0 2 2 2 1 Peptidase family M23 He_PIG PF05345.12 gi|435851948|ref|YP_007313534.1| - 4.5e-07 30.0 10.8 2.9e-06 27.4 8.9 3.2 3 0 0 3 3 3 1 Putative Ig domain Big_9 PF17963.1 gi|435851948|ref|YP_007313534.1| - 0.0029 18.3 5.4 0.0029 18.3 5.4 1.8 2 0 0 2 2 2 1 Bacterial Ig domain Cadherin_5 PF17892.1 gi|435851948|ref|YP_007313534.1| - 0.082 12.9 4.1 0.2 11.6 4.1 1.7 1 0 0 1 1 1 0 Cadherin-like domain DUF5011 PF16403.5 gi|435851948|ref|YP_007313534.1| - 2.8 8.1 7.9 4 7.6 0.9 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF5011) DUF98 PF01947.16 gi|435851949|ref|YP_007313535.1| - 3.3e-19 69.3 0.0 4.1e-19 69.0 0.0 1.0 1 0 0 1 1 1 1 p-hydroxybenzoic acid synthase Chor_lyase PF04345.13 gi|435851949|ref|YP_007313535.1| - 0.026 14.2 0.0 0.033 13.8 0.0 1.1 1 0 0 1 1 1 0 Chorismate lyase DUF5611 PF18446.1 gi|435851950|ref|YP_007313536.1| - 1.3e-34 119.2 1.9 1.5e-34 119.0 1.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) DPRP PF04244.13 gi|435851951|ref|YP_007313537.1| - 8.4e-58 195.9 0.0 1.1e-57 195.5 0.0 1.2 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.14 gi|435851951|ref|YP_007313537.1| - 3.7e-06 26.6 0.1 7.1e-06 25.6 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase Radical_SAM PF04055.21 gi|435851952|ref|YP_007313538.1| - 1.1e-09 38.9 0.1 5.9e-09 36.5 0.0 2.1 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|435851952|ref|YP_007313538.1| - 1.6e-05 25.2 0.0 3.1e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|435851952|ref|YP_007313538.1| - 0.00013 22.0 0.0 0.00031 20.9 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain S_2TMBeta PF18153.1 gi|435851952|ref|YP_007313538.1| - 0.007 16.2 0.0 2.8 7.7 0.0 2.1 2 0 0 2 2 2 2 SMODS-associating 2TM, beta-strand rich effector domain Putative_PNPOx PF01243.20 gi|435851953|ref|YP_007313539.1| - 2.7e-16 59.5 0.0 3.6e-16 59.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase AIRS PF00586.24 gi|435851955|ref|YP_007313541.1| - 1.4e-17 64.1 0.3 2.7e-17 63.2 0.3 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|435851955|ref|YP_007313541.1| - 4e-15 56.3 0.0 6.5e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Radical_SAM PF04055.21 gi|435851956|ref|YP_007313542.1| - 6.1e-25 88.5 0.1 8.7e-25 88.0 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|435851956|ref|YP_007313542.1| - 4.2e-05 23.7 0.0 0.00018 21.6 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|435851956|ref|YP_007313542.1| - 0.0078 16.5 0.1 0.062 13.6 0.0 2.4 1 1 1 2 2 2 1 4Fe-4S single cluster domain PTPS PF01242.19 gi|435851957|ref|YP_007313543.1| - 5.2e-29 100.7 0.2 6e-29 100.5 0.2 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Radical_SAM PF04055.21 gi|435851958|ref|YP_007313544.1| - 2.5e-12 47.5 0.1 4.1e-12 46.8 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|435851958|ref|YP_007313544.1| - 3.8e-09 36.7 0.0 8.5e-09 35.6 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|435851958|ref|YP_007313544.1| - 3e-07 30.8 0.0 7.2e-07 29.6 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF366 PF04017.12 gi|435851959|ref|YP_007313545.1| - 3e-72 242.0 1.3 3.3e-72 241.8 1.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) BPL_LplA_LipB PF03099.19 gi|435851959|ref|YP_007313545.1| - 0.056 13.4 0.0 0.095 12.6 0.0 1.4 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family QueC PF06508.13 gi|435851960|ref|YP_007313546.1| - 1.6e-54 184.6 0.0 1.8e-54 184.5 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|435851960|ref|YP_007313546.1| - 0.022 14.5 0.0 0.035 13.8 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase DUF1722 PF08349.11 gi|435851961|ref|YP_007313547.1| - 2e-35 121.6 0.3 3e-35 121.0 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) DUF523 PF04463.12 gi|435851961|ref|YP_007313547.1| - 6.6e-31 107.2 0.0 1.1e-30 106.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF523) Zn_Tnp_IS1595 PF12760.7 gi|435851962|ref|YP_007313548.1| - 8.9e-07 28.8 0.1 1.2e-06 28.3 0.1 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|435851962|ref|YP_007313548.1| - 0.00013 22.2 0.2 0.0002 21.7 0.2 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|435851962|ref|YP_007313548.1| - 0.0011 19.0 1.7 0.29 11.3 0.2 2.3 2 0 0 2 2 2 2 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|435851962|ref|YP_007313548.1| - 0.0078 15.7 3.4 0.027 14.0 3.4 1.9 1 1 0 1 1 1 1 TFIIB zinc-binding RecR PF02132.15 gi|435851962|ref|YP_007313548.1| - 0.012 15.2 0.3 3.3 7.4 0.0 2.4 2 0 0 2 2 2 0 RecR protein zf-RRN7 PF11781.8 gi|435851962|ref|YP_007313548.1| - 0.012 15.3 5.3 0.054 13.2 5.3 1.9 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 A2L_zn_ribbon PF08792.10 gi|435851962|ref|YP_007313548.1| - 0.015 15.0 3.0 0.049 13.4 3.0 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|435851962|ref|YP_007313548.1| - 0.019 14.8 1.5 0.047 13.6 1.5 1.7 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit C1_2 PF03107.16 gi|435851962|ref|YP_007313548.1| - 0.02 15.2 0.3 0.027 14.8 0.3 1.2 1 0 0 1 1 1 0 C1 domain zf-TFIIB PF13453.6 gi|435851962|ref|YP_007313548.1| - 0.032 13.6 0.2 0.06 12.7 0.2 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger TFIIS_C PF01096.18 gi|435851962|ref|YP_007313548.1| - 0.054 13.3 2.7 1.6 8.7 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Nudix_N_2 PF14803.6 gi|435851962|ref|YP_007313548.1| - 0.065 13.2 1.8 0.18 11.8 1.8 1.7 1 1 0 1 1 1 0 Nudix N-terminal eIF-5_eIF-2B PF01873.17 gi|435851962|ref|YP_007313548.1| - 0.073 13.0 0.2 0.1 12.5 0.2 1.3 1 0 0 1 1 1 0 Domain found in IF2B/IF5 OrfB_Zn_ribbon PF07282.11 gi|435851962|ref|YP_007313548.1| - 0.075 13.0 0.1 0.14 12.1 0.1 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|435851962|ref|YP_007313548.1| - 0.086 12.5 1.2 2.1 8.0 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-CHC2 PF01807.20 gi|435851962|ref|YP_007313548.1| - 0.11 12.3 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 CHC2 zinc finger Rubredoxin_2 PF18073.1 gi|435851962|ref|YP_007313548.1| - 1.3 8.8 7.3 0.7 9.7 1.3 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-ribbon_3 PF13248.6 gi|435851962|ref|YP_007313548.1| - 2.1 7.9 8.8 2.5 7.6 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S3Ae PF01015.18 gi|435851963|ref|YP_007313549.1| - 4.7e-69 232.0 3.6 5.2e-69 231.9 3.6 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family tRNA_bind_4 PF18490.1 gi|435851964|ref|YP_007313550.1| - 1.1e-58 197.6 0.1 1.6e-58 197.0 0.1 1.3 1 0 0 1 1 1 1 tRNA-binding domain tRNA-synt_2b PF00587.25 gi|435851964|ref|YP_007313550.1| - 2.4e-06 27.6 0.0 4.3e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) MRP-L28 PF09812.9 gi|435851965|ref|YP_007313551.1| - 0.0046 17.1 1.3 0.011 15.9 1.3 1.7 1 1 1 2 2 2 1 Mitochondrial ribosomal protein L28 TFIIIC_sub6 PF10419.9 gi|435851965|ref|YP_007313551.1| - 0.018 14.9 0.0 0.024 14.5 0.0 1.3 1 1 0 1 1 1 0 TFIIIC subunit triple barrel domain Transglut_core PF01841.19 gi|435851966|ref|YP_007313552.1| - 0.0025 18.3 0.0 0.005 17.3 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4131 PF13567.6 gi|435851966|ref|YP_007313552.1| - 0.039 13.6 0.0 0.062 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) SieB PF14163.6 gi|435851966|ref|YP_007313552.1| - 0.056 12.9 1.6 0.088 12.3 0.8 1.8 1 1 0 1 1 1 0 Super-infection exclusion protein B ApbA_C PF08546.11 gi|435851967|ref|YP_007313553.1| - 9.3e-33 113.1 0.0 1.4e-32 112.5 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|435851967|ref|YP_007313553.1| - 3.9e-26 91.5 0.0 5.5e-26 91.0 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ATHILA PF03078.15 gi|435851967|ref|YP_007313553.1| - 0.001 18.0 0.1 0.0015 17.5 0.1 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family NAD_Gly3P_dh_N PF01210.23 gi|435851967|ref|YP_007313553.1| - 0.019 14.9 0.3 1.1 9.3 0.1 2.9 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|435851967|ref|YP_007313553.1| - 0.046 14.3 0.2 0.61 10.7 0.2 2.4 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_8 PF13450.6 gi|435851967|ref|YP_007313553.1| - 0.059 13.6 0.1 0.12 12.6 0.1 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|435851967|ref|YP_007313553.1| - 0.069 12.7 1.1 0.11 12.0 0.3 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|435851967|ref|YP_007313553.1| - 0.14 12.4 0.1 0.38 11.0 0.1 1.7 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain UDG PF03167.19 gi|435851968|ref|YP_007313554.1| - 6.3e-38 130.2 0.0 8.8e-38 129.7 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DHHA1 PF02272.19 gi|435851970|ref|YP_007313556.1| - 1.1e-14 55.1 0.1 2.5e-14 53.9 0.1 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|435851970|ref|YP_007313556.1| - 0.00065 19.9 0.3 0.0017 18.6 0.3 1.7 1 0 0 1 1 1 1 DHH family NTP_transferase PF00483.23 gi|435851971|ref|YP_007313557.1| - 4.4e-45 154.2 0.0 5.9e-45 153.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|435851971|ref|YP_007313557.1| - 1e-16 61.7 0.0 1.5e-16 61.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|435851971|ref|YP_007313557.1| - 5.2e-14 51.3 32.3 1.7e-08 33.9 5.6 4.8 2 1 2 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|435851971|ref|YP_007313557.1| - 8.5e-08 31.8 5.9 8.5e-08 31.8 5.9 4.8 4 1 0 4 4 4 1 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|435851971|ref|YP_007313557.1| - 4.3e-05 23.4 0.0 0.00012 21.9 0.0 1.7 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|435851971|ref|YP_007313557.1| - 0.004 15.4 3.1 0.0084 14.3 3.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4954) CTP_transf_3 PF02348.19 gi|435851971|ref|YP_007313557.1| - 0.0057 16.6 0.1 0.012 15.5 0.1 1.5 1 1 0 1 1 1 1 Cytidylyltransferase NAD_binding_10 PF13460.6 gi|435851971|ref|YP_007313557.1| - 0.13 12.1 0.2 0.37 10.7 0.0 1.7 2 0 0 2 2 2 0 NAD(P)H-binding PGM_PMM_I PF02878.16 gi|435851972|ref|YP_007313558.1| - 6e-38 129.7 0.0 1.1e-37 128.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|435851972|ref|YP_007313558.1| - 1.4e-25 89.8 0.0 3.5e-25 88.6 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|435851972|ref|YP_007313558.1| - 5.8e-18 65.2 0.0 1.2e-17 64.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|435851972|ref|YP_007313558.1| - 5.2e-11 42.6 0.1 1.1e-10 41.5 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain SIS PF01380.22 gi|435851973|ref|YP_007313559.1| - 2.6e-52 176.1 1.7 3.6e-27 94.8 0.1 2.6 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.6 gi|435851973|ref|YP_007313559.1| - 3.1e-20 72.7 0.1 1.1e-19 70.9 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|435851973|ref|YP_007313559.1| - 1.2e-15 57.5 0.0 1.1e-14 54.4 0.0 2.2 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|435851973|ref|YP_007313559.1| - 0.00013 20.9 0.0 0.00022 20.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF5124 PF17160.4 gi|435851973|ref|YP_007313559.1| - 0.00037 21.2 0.0 0.00096 19.9 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF5124) NTP_transferase PF00483.23 gi|435851974|ref|YP_007313560.1| - 2.1e-38 132.3 0.0 2.8e-38 131.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|435851974|ref|YP_007313560.1| - 1.1e-15 56.7 42.2 1.1e-07 31.2 4.3 5.6 1 1 5 6 6 6 6 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|435851974|ref|YP_007313560.1| - 4.5e-12 46.6 0.0 5.7e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|435851974|ref|YP_007313560.1| - 1.9e-09 37.1 26.2 6.7e-06 25.8 3.0 4.6 3 1 2 5 5 5 4 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|435851974|ref|YP_007313560.1| - 0.0082 15.9 0.0 0.015 15.0 0.0 1.6 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|435851974|ref|YP_007313560.1| - 0.03 12.5 1.7 0.04 12.0 1.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|435851974|ref|YP_007313560.1| - 0.047 12.6 1.9 4.4 6.1 1.9 2.6 1 1 0 1 1 1 0 L-fucokinase ISAV_HA PF06215.11 gi|435851974|ref|YP_007313560.1| - 0.054 12.6 0.2 0.082 12.0 0.2 1.2 1 0 0 1 1 1 0 Infectious salmon anaemia virus haemagglutinin Ribosomal_S13_N PF08069.12 gi|435851975|ref|YP_007313561.1| - 7.1e-26 90.0 3.7 9.1e-26 89.7 2.6 1.8 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|435851975|ref|YP_007313561.1| - 7.7e-14 51.7 0.2 1.1e-13 51.1 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 NPCC PF08058.11 gi|435851976|ref|YP_007313562.1| - 0.12 12.4 0.8 0.61 10.2 0.2 2.4 2 1 0 2 2 2 0 Nuclear pore complex component Mtp PF03821.16 gi|435851978|ref|YP_007313564.1| - 0.038 13.6 0.6 0.54 9.8 0.1 2.0 2 0 0 2 2 2 0 Golgi 4-transmembrane spanning transporter tRNA-synt_His PF13393.6 gi|435851980|ref|YP_007313566.1| - 1e-63 215.5 0.0 1.2e-63 215.2 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|435851980|ref|YP_007313566.1| - 2.3e-16 60.3 0.0 3.2e-16 59.8 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|435851980|ref|YP_007313566.1| - 5.9e-10 39.2 0.0 9.6e-10 38.5 0.0 1.3 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.20 gi|435851980|ref|YP_007313566.1| - 0.0012 18.0 2.6 0.48 9.4 0.0 2.6 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|435851980|ref|YP_007313566.1| - 0.0016 18.0 0.0 0.025 14.1 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) PALP PF00291.25 gi|435851981|ref|YP_007313567.1| - 4.6e-43 147.7 0.0 5.3e-43 147.5 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme MS_channel PF00924.18 gi|435851982|ref|YP_007313568.1| - 2.7e-42 144.7 1.3 4.9e-42 143.8 1.3 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF3810 PF12725.7 gi|435851982|ref|YP_007313568.1| - 0.1 11.9 1.1 0.15 11.4 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) UPF0182 PF03699.13 gi|435851982|ref|YP_007313568.1| - 0.12 10.4 1.6 0.15 10.1 1.6 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) DEAD PF00270.29 gi|435851983|ref|YP_007313569.1| - 1.4e-25 90.1 0.1 6.8e-25 87.8 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|435851983|ref|YP_007313569.1| - 3.4e-10 40.4 0.1 4.3e-09 36.8 0.1 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.31 gi|435851983|ref|YP_007313569.1| - 8.2e-10 39.0 0.4 3.4e-08 33.8 0.0 3.4 3 1 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|435851983|ref|YP_007313569.1| - 1.4e-09 38.2 0.0 2.5e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.9 gi|435851983|ref|YP_007313569.1| - 0.00011 21.9 0.0 0.00053 19.8 0.0 2.1 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.7 gi|435851983|ref|YP_007313569.1| - 0.00046 20.2 0.1 0.0021 18.1 0.1 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.23 gi|435851983|ref|YP_007313569.1| - 0.011 15.5 0.0 7.9 6.6 0.0 3.0 3 0 0 3 3 3 0 Helix-hairpin-helix motif ANF_receptor PF01094.28 gi|435851983|ref|YP_007313569.1| - 0.016 14.3 0.0 0.024 13.7 0.0 1.2 1 0 0 1 1 1 0 Receptor family ligand binding region HemN_C PF06969.16 gi|435851983|ref|YP_007313569.1| - 0.076 13.1 0.3 0.29 11.2 0.3 2.1 1 0 0 1 1 1 0 HemN C-terminal domain Sec63 PF02889.16 gi|435851983|ref|YP_007313569.1| - 0.14 11.3 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 Sec63 Brl domain Histidinol_dh PF00815.20 gi|435851984|ref|YP_007313570.1| - 3.1e-168 560.0 7.1 3.7e-168 559.8 7.1 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DUF1699 PF08004.11 gi|435851985|ref|YP_007313571.1| - 1.2e-61 206.1 2.7 1.3e-61 206.0 2.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) LKAAEAR PF15478.6 gi|435851985|ref|YP_007313571.1| - 0.014 15.7 0.0 0.021 15.1 0.0 1.3 1 1 0 1 1 1 0 Family of unknown function with LKAAEAR motif Img2 PF05046.14 gi|435851985|ref|YP_007313571.1| - 0.059 13.7 0.1 0.15 12.4 0.1 1.6 1 1 1 2 2 2 0 Mitochondrial large subunit ribosomal protein (Img2) DUF4394 PF14339.6 gi|435851985|ref|YP_007313571.1| - 0.18 11.1 0.0 0.21 10.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4394) TP_methylase PF00590.20 gi|435851986|ref|YP_007313572.1| - 4.7e-54 183.5 0.0 5.5e-54 183.3 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.15 gi|435851987|ref|YP_007313573.1| - 6.8e-41 140.1 0.0 7.9e-41 139.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Peripla_BP_6 PF13458.6 gi|435851987|ref|YP_007313573.1| - 0.05 13.3 0.0 1 8.9 0.0 2.3 2 1 0 2 2 2 0 Periplasmic binding protein Nitro_FeMo-Co PF02579.17 gi|435851987|ref|YP_007313573.1| - 0.13 12.6 0.1 8.5 6.8 0.0 2.4 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor Radical_SAM PF04055.21 gi|435851988|ref|YP_007313574.1| - 9.9e-28 97.6 0.1 5.3e-27 95.2 0.0 2.1 1 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|435851988|ref|YP_007313574.1| - 2.1e-12 47.5 0.0 4.3e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|435851988|ref|YP_007313574.1| - 1.4e-08 34.9 0.0 2.8e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|435851988|ref|YP_007313574.1| - 2.4e-06 28.0 0.1 7.1e-06 26.4 0.1 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Desulfoferrodox PF01880.18 gi|435851989|ref|YP_007313575.1| - 1.3e-23 83.4 1.0 1.5e-23 83.2 1.0 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin tRNA-synt_1 PF00133.22 gi|435851990|ref|YP_007313576.1| - 9.4e-130 433.7 4.8 1.9e-128 429.4 4.8 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|435851990|ref|YP_007313576.1| - 1.5e-36 125.6 0.0 2.7e-36 124.8 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|435851990|ref|YP_007313576.1| - 1.5e-25 89.8 0.6 1.3e-12 47.2 0.0 3.6 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|435851990|ref|YP_007313576.1| - 1.5e-06 27.8 0.0 0.0024 17.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|435851990|ref|YP_007313576.1| - 5.3e-05 22.8 0.0 0.00052 19.6 0.0 2.1 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|435851990|ref|YP_007313576.1| - 0.036 13.0 0.0 0.25 10.2 0.0 2.2 2 1 0 2 2 2 0 tRNA synthetases class I (K) Zn-ribbon_8 PF09723.10 gi|435851990|ref|YP_007313576.1| - 0.5 10.5 5.4 0.49 10.5 0.7 2.8 3 0 0 3 3 3 0 Zinc ribbon domain zf-RRN7 PF11781.8 gi|435851990|ref|YP_007313576.1| - 0.84 9.4 3.5 0.58 9.9 0.3 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 PUA PF01472.20 gi|435851991|ref|YP_007313577.1| - 1.4e-16 60.2 0.6 2.9e-16 59.2 0.6 1.5 2 0 0 2 2 2 1 PUA domain UPF0113 PF03657.13 gi|435851991|ref|YP_007313577.1| - 0.00094 19.4 0.2 0.0027 17.9 0.1 1.7 2 0 0 2 2 2 1 UPF0113 PUA domain Pre-PUA PF17832.1 gi|435851991|ref|YP_007313577.1| - 0.0031 18.2 0.0 0.0076 16.9 0.0 1.7 1 1 0 1 1 1 1 Pre-PUA-like domain SepF PF04472.12 gi|435851992|ref|YP_007313578.1| - 5.4e-11 42.6 0.6 7.4e-11 42.2 0.6 1.2 1 0 0 1 1 1 1 Cell division protein SepF Transposase_31 PF04754.12 gi|435851992|ref|YP_007313578.1| - 0.022 14.4 0.1 0.027 14.1 0.1 1.1 1 0 0 1 1 1 0 Putative transposase, YhgA-like TFA2_Winged_2 PF18121.1 gi|435851992|ref|YP_007313578.1| - 0.16 11.7 0.7 0.35 10.6 0.1 1.7 2 0 0 2 2 2 0 TFA2 Winged helix domain 2 zf-ZPR1 PF03367.13 gi|435851993|ref|YP_007313579.1| - 1.7e-32 112.5 0.0 2.5e-32 112.0 0.0 1.2 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Nse4-Nse3_bdg PF15412.6 gi|435851993|ref|YP_007313579.1| - 0.16 12.1 0.0 0.27 11.4 0.0 1.3 1 0 0 1 1 1 0 Binding domain of Nse4/EID3 to Nse3-MAGE AhpC-TSA PF00578.21 gi|435851994|ref|YP_007313580.1| - 4e-29 101.0 0.0 5.5e-29 100.6 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.9 gi|435851994|ref|YP_007313580.1| - 2.4e-13 49.7 0.3 4.8e-13 48.7 0.3 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.10 gi|435851994|ref|YP_007313580.1| - 1.3e-08 34.6 0.0 1.7e-07 31.0 0.0 2.0 1 1 0 1 1 1 1 Redoxin tRNA-synt_2b PF00587.25 gi|435851995|ref|YP_007313581.1| - 4.2e-26 92.0 0.0 6.5e-26 91.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|435851995|ref|YP_007313581.1| - 3.2e-22 78.5 0.1 5.9e-22 77.6 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|435851995|ref|YP_007313581.1| - 2.4e-17 62.9 0.4 7.2e-17 61.4 0.0 2.0 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal DBI_PRT PF02277.17 gi|435851996|ref|YP_007313582.1| - 6.5e-07 28.9 1.8 8.9e-07 28.4 1.8 1.2 1 0 0 1 1 1 1 Phosphoribosyltransferase Response_reg PF00072.24 gi|435851998|ref|YP_007313584.1| - 8e-28 96.8 0.1 2.1e-27 95.5 0.1 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|435851998|ref|YP_007313584.1| - 7.9e-13 48.6 0.1 2e-12 47.2 0.1 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|435851998|ref|YP_007313584.1| - 2.3e-11 43.7 0.0 4.7e-11 42.7 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|435851998|ref|YP_007313584.1| - 1.1e-10 41.7 0.0 2.7e-10 40.5 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|435851998|ref|YP_007313584.1| - 3.5e-10 40.0 0.0 1.8e-09 37.7 0.0 2.2 3 0 0 3 3 3 1 PAS fold Phage_min_cap2 PF06152.11 gi|435851998|ref|YP_007313584.1| - 0.014 14.3 0.4 0.044 12.7 0.1 1.7 1 1 1 2 2 2 0 Phage minor capsid protein 2 DUF2167 PF09935.9 gi|435851998|ref|YP_007313584.1| - 0.038 13.2 0.1 0.15 11.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2167) Ribosomal_L15e PF00827.17 gi|435851999|ref|YP_007313585.1| - 9.7e-84 279.8 10.7 1.1e-83 279.7 10.7 1.0 1 0 0 1 1 1 1 Ribosomal L15 FXMRP1_C_core PF12235.8 gi|435851999|ref|YP_007313585.1| - 0.38 11.4 11.0 0.27 11.9 3.0 2.1 2 0 0 2 2 2 0 Fragile X-related 1 protein core C terminal RNA_binding PF01877.17 gi|435852000|ref|YP_007313586.1| - 8.8e-36 122.8 1.0 1e-35 122.5 1.0 1.1 1 0 0 1 1 1 1 RNA binding RNase_P_p30 PF01876.16 gi|435852001|ref|YP_007313587.1| - 2.6e-36 125.1 0.0 3.8e-36 124.6 0.0 1.2 1 0 0 1 1 1 1 RNase P subunit p30 RNase_P_Rpp14 PF01900.19 gi|435852002|ref|YP_007313588.1| - 3.4e-19 69.0 0.2 4e-19 68.8 0.2 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family YdaS_antitoxin PF15943.5 gi|435852002|ref|YP_007313588.1| - 0.16 11.9 0.6 1.8 8.5 0.1 2.2 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Proteasome PF00227.26 gi|435852003|ref|YP_007313589.1| - 1.6e-60 203.9 0.6 2.4e-60 203.3 0.6 1.3 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|435852003|ref|YP_007313589.1| - 1.2e-14 53.7 0.5 4.4e-14 51.8 0.1 2.1 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature PDT PF00800.18 gi|435852003|ref|YP_007313589.1| - 0.036 13.9 0.1 0.1 12.4 0.1 1.8 1 1 0 1 1 1 0 Prephenate dehydratase SBDS PF01172.18 gi|435852004|ref|YP_007313590.1| - 2e-23 82.3 0.2 3.3e-23 81.6 0.2 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|435852004|ref|YP_007313590.1| - 3.3e-22 78.7 0.1 4.9e-22 78.1 0.1 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain KH_6 PF15985.5 gi|435852005|ref|YP_007313591.1| - 7.5e-12 45.4 0.1 1.4e-11 44.6 0.1 1.5 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.6 gi|435852005|ref|YP_007313591.1| - 8.1e-08 31.9 0.0 1.4e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_1 PF00013.29 gi|435852005|ref|YP_007313591.1| - 2.3e-06 27.3 0.1 5.7e-06 26.1 0.1 1.7 1 0 0 1 1 1 1 KH domain S1 PF00575.23 gi|435852005|ref|YP_007313591.1| - 0.0004 20.7 2.0 0.014 15.7 0.0 3.2 3 1 0 3 3 3 1 S1 RNA binding domain KH_2 PF07650.17 gi|435852005|ref|YP_007313591.1| - 0.003 17.4 0.8 0.014 15.2 0.0 2.4 2 1 0 2 2 2 1 KH domain Dicistro_VP4 PF11492.8 gi|435852005|ref|YP_007313591.1| - 0.047 13.7 0.0 0.16 11.9 0.0 1.9 1 1 0 1 1 1 0 Cricket paralysis virus, VP4 RNase_PH PF01138.21 gi|435852006|ref|YP_007313592.1| - 6.4e-33 114.1 0.0 1.1e-32 113.3 0.0 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|435852006|ref|YP_007313592.1| - 5.1e-19 68.1 0.3 1.1e-18 67.0 0.3 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|435852007|ref|YP_007313593.1| - 4.8e-29 101.5 0.0 7.9e-29 100.8 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|435852007|ref|YP_007313593.1| - 5.7e-13 48.7 0.6 1.1e-12 47.8 0.6 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.19 gi|435852008|ref|YP_007313594.1| - 4.9e-31 106.7 1.9 5.7e-31 106.5 1.9 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family C1_1 PF00130.22 gi|435852008|ref|YP_007313594.1| - 0.00099 19.0 0.7 0.0014 18.4 0.7 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.7 gi|435852008|ref|YP_007313594.1| - 0.0012 18.8 1.9 0.0018 18.2 1.9 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|435852008|ref|YP_007313594.1| - 0.008 16.6 0.4 0.81 10.2 0.0 2.3 2 0 0 2 2 2 1 Zinc-finger double domain OrfB_Zn_ribbon PF07282.11 gi|435852008|ref|YP_007313594.1| - 0.11 12.4 0.5 0.18 11.7 0.5 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HalOD2 PF18547.1 gi|435852008|ref|YP_007313594.1| - 0.12 12.3 6.6 0.67 9.9 6.6 2.1 1 1 0 1 1 1 0 Halobacterial output domain 2 DNA_RNApol_7kD PF03604.13 gi|435852009|ref|YP_007313595.1| - 6.5e-08 32.1 9.0 9.4e-08 31.6 9.0 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf_UBZ PF18439.1 gi|435852009|ref|YP_007313595.1| - 0.00012 21.6 0.6 0.42 10.3 0.0 2.1 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|435852009|ref|YP_007313595.1| - 0.0041 16.5 0.5 0.13 11.7 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_6 PF14599.6 gi|435852009|ref|YP_007313595.1| - 0.0082 16.1 1.3 0.011 15.7 1.3 1.3 1 0 0 1 1 1 1 Zinc-ribbon DUF951 PF06107.11 gi|435852009|ref|YP_007313595.1| - 0.01 15.7 3.7 0.085 12.8 0.2 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zf-FCS PF06467.14 gi|435852009|ref|YP_007313595.1| - 0.026 14.5 1.2 0.26 11.3 0.0 2.0 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif HypA PF01155.19 gi|435852009|ref|YP_007313595.1| - 0.027 14.5 0.3 0.027 14.5 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2072 PF09845.9 gi|435852009|ref|YP_007313595.1| - 0.039 14.2 0.3 0.039 14.2 0.3 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein C1_1 PF00130.22 gi|435852009|ref|YP_007313595.1| - 0.043 13.7 1.9 4.8 7.1 0.3 1.8 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Desulfoferrod_N PF06397.12 gi|435852009|ref|YP_007313595.1| - 0.043 13.4 3.8 0.36 10.5 0.5 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.10 gi|435852009|ref|YP_007313595.1| - 0.05 13.7 2.5 0.22 11.7 2.6 1.8 1 1 0 1 1 1 0 Zinc ribbon domain ZZ PF00569.17 gi|435852009|ref|YP_007313595.1| - 0.082 12.7 4.0 1.2 9.1 0.5 2.1 1 1 1 2 2 2 0 Zinc finger, ZZ type zinc_ribbon_4 PF13717.6 gi|435852009|ref|YP_007313595.1| - 0.19 11.6 3.9 4 7.4 3.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Pcc1 PF09341.10 gi|435852011|ref|YP_007313597.1| - 9.3e-11 41.7 0.6 1e-10 41.6 0.6 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.20 gi|435852012|ref|YP_007313598.1| - 4.5e-21 74.8 21.3 5.1e-21 74.6 21.3 1.0 1 0 0 1 1 1 1 Prefoldin subunit DHR10 PF18595.1 gi|435852012|ref|YP_007313598.1| - 0.011 15.7 19.8 0.029 14.4 8.1 2.1 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain FlaC_arch PF05377.11 gi|435852012|ref|YP_007313598.1| - 0.29 11.6 11.1 0.12 12.8 1.4 2.6 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) Nup54 PF13874.6 gi|435852012|ref|YP_007313598.1| - 0.43 10.7 18.6 21 5.2 18.6 2.3 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 TcpS PF17456.2 gi|435852012|ref|YP_007313598.1| - 0.49 10.4 4.7 0.26 11.3 0.8 1.9 2 0 0 2 2 2 0 Toxin-coregulated pilus protein S DUF4795 PF16043.5 gi|435852012|ref|YP_007313598.1| - 0.55 9.8 14.2 0.22 11.1 3.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) Seryl_tRNA_N PF02403.22 gi|435852012|ref|YP_007313598.1| - 1.6 9.0 13.2 3.3 8.0 3.0 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain FapA PF03961.13 gi|435852012|ref|YP_007313598.1| - 1.7 7.1 11.5 2 6.9 11.5 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A EcsC PF12787.7 gi|435852012|ref|YP_007313598.1| - 1.8 8.2 9.6 6.1 6.4 9.6 1.9 1 1 0 1 1 1 0 EcsC protein family V_ATPase_I PF01496.19 gi|435852012|ref|YP_007313598.1| - 1.8 6.4 7.9 2.1 6.2 7.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF948 PF06103.11 gi|435852012|ref|YP_007313598.1| - 2 8.7 6.5 6.2 7.2 0.3 2.5 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Atg14 PF10186.9 gi|435852012|ref|YP_007313598.1| - 4.7 6.2 16.1 9.4 5.2 16.1 1.5 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 XhlA PF10779.9 gi|435852012|ref|YP_007313598.1| - 5.6 7.3 9.2 0.49 10.6 1.8 2.3 2 1 0 2 2 2 0 Haemolysin XhlA DUF3450 PF11932.8 gi|435852012|ref|YP_007313598.1| - 8.3 5.6 24.4 4.2 6.6 6.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DHH PF01368.20 gi|435852013|ref|YP_007313599.1| - 9.9e-12 45.0 1.4 1.1e-11 44.8 0.2 1.7 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.19 gi|435852013|ref|YP_007313599.1| - 2.8e-11 44.0 1.9 5.2e-11 43.1 1.9 1.4 1 0 0 1 1 1 1 DHHA1 domain AMP-binding_C_2 PF14535.6 gi|435852014|ref|YP_007313600.1| - 1.6e-31 108.4 0.5 3.6e-31 107.3 0.5 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|435852014|ref|YP_007313600.1| - 1.5e-14 53.4 1.3 1.8e-14 53.2 0.1 1.8 2 0 0 2 2 2 1 AMP-binding enzyme LuxE PF04443.12 gi|435852014|ref|YP_007313600.1| - 0.00043 19.4 0.0 0.12 11.4 0.0 2.2 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE GH3 PF03321.13 gi|435852014|ref|YP_007313600.1| - 0.0016 17.3 0.0 0.023 13.6 0.0 2.2 2 0 0 2 2 2 1 GH3 auxin-responsive promoter ACT PF01842.25 gi|435852015|ref|YP_007313601.1| - 3.2e-16 58.8 0.5 1.2e-07 31.4 0.1 2.2 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|435852015|ref|YP_007313601.1| - 2e-07 31.5 0.2 0.018 15.7 0.0 2.3 2 1 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|435852015|ref|YP_007313601.1| - 2.4e-05 24.0 0.3 0.052 13.3 0.2 2.7 2 1 0 2 2 2 2 ACT domain DUF2103 PF09876.9 gi|435852016|ref|YP_007313602.1| - 2.6e-37 126.7 1.7 3e-37 126.5 1.7 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) Glyco_trans_1_4 PF13692.6 gi|435852018|ref|YP_007313604.1| - 3e-37 128.1 0.0 7.9e-20 71.7 0.0 2.6 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|435852018|ref|YP_007313604.1| - 2.8e-31 108.4 0.3 3.7e-23 81.9 0.0 3.1 3 0 0 3 3 3 2 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|435852018|ref|YP_007313604.1| - 7.9e-18 64.6 0.0 3.2e-09 37.1 0.0 2.7 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|435852018|ref|YP_007313604.1| - 8.5e-11 42.1 0.0 3.8e-10 40.0 0.0 2.2 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|435852018|ref|YP_007313604.1| - 0.0011 19.4 0.0 0.0031 18.0 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain CTP-dep_RFKase PF01982.16 gi|435852018|ref|YP_007313604.1| - 0.035 14.2 0.0 0.099 12.7 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function DUF120 P-mevalo_kinase PF04275.14 gi|435852018|ref|YP_007313604.1| - 0.21 11.5 1.2 0.44 10.5 0.1 2.0 2 0 0 2 2 2 0 Phosphomevalonate kinase Glycos_transf_1 PF00534.20 gi|435852019|ref|YP_007313605.1| - 1.1e-15 57.6 0.0 1.9e-15 56.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|435852019|ref|YP_007313605.1| - 1.7e-10 41.1 0.0 1.1e-09 38.6 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|435852019|ref|YP_007313605.1| - 1.8e-10 41.3 0.0 2.6e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 TDP43_N PF18694.1 gi|435852019|ref|YP_007313605.1| - 0.036 13.9 0.1 0.66 9.9 0.0 2.7 3 0 0 3 3 3 0 Transactive response DNA-binding protein N-terminal domain LVIVD PF08309.11 gi|435852020|ref|YP_007313606.1| - 5.4e-115 374.5 81.9 2.9e-16 58.5 2.5 14.5 14 0 0 14 14 14 14 LVIVD repeat Beta_propel PF09826.9 gi|435852020|ref|YP_007313606.1| - 6.6e-08 31.9 7.2 0.078 11.8 0.7 6.1 1 1 2 4 4 4 4 Beta propeller domain CPSF_A PF03178.15 gi|435852020|ref|YP_007313606.1| - 4.3e-07 29.5 1.9 1.6 8.0 0.0 4.3 2 2 1 4 4 4 3 CPSF A subunit region VCBS PF13517.6 gi|435852020|ref|YP_007313606.1| - 0.00014 22.4 48.6 0.0013 19.3 3.2 8.5 2 2 6 8 8 8 5 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella DUF1726 PF08351.11 gi|435852020|ref|YP_007313606.1| - 0.014 15.3 0.1 3.2 7.8 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1726) Cupin_2 PF07883.11 gi|435852021|ref|YP_007313607.1| - 4.5e-15 55.1 0.5 7.4e-15 54.4 0.5 1.3 1 0 0 1 1 1 1 Cupin domain HTH_31 PF13560.6 gi|435852021|ref|YP_007313607.1| - 1.1e-10 41.7 0.2 1.6e-10 41.2 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|435852021|ref|YP_007313607.1| - 1.1e-10 41.4 0.2 1.5e-10 41.0 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 gi|435852021|ref|YP_007313607.1| - 5.2e-06 26.8 0.0 8e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain AraC_binding PF02311.19 gi|435852021|ref|YP_007313607.1| - 9.7e-06 25.5 0.2 1.8e-05 24.6 0.2 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_19 PF12844.7 gi|435852021|ref|YP_007313607.1| - 4.4e-05 23.4 0.0 7.5e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|435852021|ref|YP_007313607.1| - 0.00011 21.9 1.3 0.00022 21.0 1.3 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain Cupin_3 PF05899.12 gi|435852021|ref|YP_007313607.1| - 0.00085 19.0 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) MannoseP_isomer PF01050.18 gi|435852021|ref|YP_007313607.1| - 0.012 15.5 0.2 0.02 14.8 0.2 1.3 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase 4HBT_2 PF13279.6 gi|435852022|ref|YP_007313608.1| - 2.8e-11 43.9 0.0 3.4e-11 43.7 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|435852022|ref|YP_007313608.1| - 2.5e-08 34.1 0.0 4.1e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|435852022|ref|YP_007313608.1| - 5.2e-06 25.9 0.0 0.0058 15.9 0.0 2.2 1 1 1 2 2 2 2 Acyl-ACP thioesterase AMP-binding PF00501.28 gi|435852023|ref|YP_007313609.1| - 1e-111 373.6 0.0 1.2e-111 373.4 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|435852023|ref|YP_007313609.1| - 1.3e-18 67.7 0.0 2.7e-18 66.7 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF2341 PF10102.9 gi|435852024|ref|YP_007313610.1| - 1.7e-24 86.2 0.1 4.9e-24 84.7 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF2341) Glyco_hydro_25 PF01183.20 gi|435852024|ref|YP_007313610.1| - 0.0065 16.7 0.0 0.016 15.4 0.0 1.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 25 Thioredoxin PF00085.20 gi|435852025|ref|YP_007313611.1| - 1.8e-22 79.3 0.1 2.1e-22 79.1 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|435852025|ref|YP_007313611.1| - 7.9e-07 29.5 0.3 3.9e-05 24.1 0.3 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain OST3_OST6 PF04756.13 gi|435852025|ref|YP_007313611.1| - 6.3e-06 25.8 0.0 7.7e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_3 PF13192.6 gi|435852025|ref|YP_007313611.1| - 0.003 17.6 0.1 0.0055 16.7 0.1 1.5 1 0 0 1 1 1 1 Thioredoxin domain AhpC-TSA PF00578.21 gi|435852025|ref|YP_007313611.1| - 0.0031 17.4 0.1 0.0048 16.8 0.1 1.4 1 1 0 1 1 1 1 AhpC/TSA family TraF PF13728.6 gi|435852025|ref|YP_007313611.1| - 0.0054 16.6 0.0 0.0065 16.3 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_7 PF13899.6 gi|435852025|ref|YP_007313611.1| - 0.018 15.2 0.0 0.029 14.6 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like Thioredoxin_6 PF13848.6 gi|435852025|ref|YP_007313611.1| - 0.056 13.4 0.0 0.074 13.0 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin-like domain DUF2156 PF09924.9 gi|435852026|ref|YP_007313612.1| - 6.4e-86 288.0 0.0 8.2e-86 287.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2156) LPG_synthase_TM PF03706.13 gi|435852026|ref|YP_007313612.1| - 1.1e-09 38.3 32.0 1.1e-09 38.3 32.0 2.7 2 1 1 3 3 3 1 Lysylphosphatidylglycerol synthase TM region DEAD PF00270.29 gi|435852027|ref|YP_007313613.1| - 2.7e-27 95.6 0.0 4.7e-27 94.9 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|435852027|ref|YP_007313613.1| - 1.5e-18 67.4 0.0 5.1e-18 65.6 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) TPR_1 PF00515.28 gi|435852027|ref|YP_007313613.1| - 2.7e-17 61.8 5.4 1.9e-07 30.6 0.0 4.5 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|435852027|ref|YP_007313613.1| - 7.1e-15 53.9 2.2 5.2e-06 26.2 0.0 4.2 4 0 0 4 4 3 3 Tetratricopeptide repeat Helicase_C PF00271.31 gi|435852027|ref|YP_007313613.1| - 2.7e-12 47.0 0.2 1.7e-11 44.5 0.0 2.4 2 1 0 2 2 2 1 Helicase conserved C-terminal domain TPR_9 PF13371.6 gi|435852027|ref|YP_007313613.1| - 6.5e-11 42.2 0.2 2.9e-06 27.3 0.0 3.0 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|435852027|ref|YP_007313613.1| - 6.8e-11 41.5 0.2 0.019 15.1 0.0 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|435852027|ref|YP_007313613.1| - 2.4e-10 39.9 1.0 0.00016 21.3 0.1 3.0 2 1 0 2 2 2 2 TPR repeat TPR_14 PF13428.6 gi|435852027|ref|YP_007313613.1| - 6.2e-10 39.0 0.2 0.0022 18.7 0.0 3.7 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|435852027|ref|YP_007313613.1| - 6e-09 36.3 0.4 6.7e-06 26.5 0.1 2.7 1 1 0 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|435852027|ref|YP_007313613.1| - 5.4e-08 33.4 0.3 0.002 18.7 0.0 2.8 2 1 1 3 3 2 2 Tetratricopeptide repeat ResIII PF04851.15 gi|435852027|ref|YP_007313613.1| - 5.8e-07 29.7 0.0 1.7e-06 28.2 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit TPR_12 PF13424.6 gi|435852027|ref|YP_007313613.1| - 1.8e-06 28.2 0.0 0.093 13.0 0.1 2.9 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|435852027|ref|YP_007313613.1| - 7.6e-06 26.0 1.8 0.011 16.1 0.3 3.8 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|435852027|ref|YP_007313613.1| - 2e-05 24.3 0.3 3.9 7.7 0.0 4.0 2 1 1 3 3 3 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|435852027|ref|YP_007313613.1| - 9.2e-05 22.4 1.4 0.22 11.6 0.0 2.6 2 0 0 2 2 2 2 Fis1 C-terminal tetratricopeptide repeat TPR_6 PF13174.6 gi|435852027|ref|YP_007313613.1| - 0.00013 22.3 0.3 8.9 7.2 0.0 3.9 3 0 0 3 3 3 1 Tetratricopeptide repeat ISG65-75 PF11727.8 gi|435852027|ref|YP_007313613.1| - 0.0055 16.0 0.5 0.011 15.0 0.5 1.4 1 0 0 1 1 1 1 Invariant surface glycoprotein ANAPC3 PF12895.7 gi|435852027|ref|YP_007313613.1| - 0.023 14.9 1.1 0.68 10.2 0.3 3.1 3 1 1 4 4 4 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_15 PF13429.6 gi|435852027|ref|YP_007313613.1| - 0.027 13.7 0.0 0.064 12.5 0.0 1.6 1 1 0 1 1 1 0 Tetratricopeptide repeat Pirin PF02678.16 gi|435852028|ref|YP_007313614.1| - 1.1e-32 112.2 0.0 2e-32 111.4 0.0 1.4 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.13 gi|435852028|ref|YP_007313614.1| - 5e-24 84.7 0.0 3.3e-23 82.0 0.0 2.2 3 0 0 3 3 3 1 Pirin C-terminal cupin domain Disaggr_assoc PF08480.10 gi|435852030|ref|YP_007313616.1| - 9.9e-38 129.9 16.9 9.9e-38 129.9 16.9 2.7 2 1 0 2 2 2 1 Disaggregatase related Beta_helix PF13229.6 gi|435852030|ref|YP_007313616.1| - 1.9e-14 53.8 45.0 2.5e-12 46.9 13.6 2.6 1 1 1 2 2 2 2 Right handed beta helix region DUF5123 PF17161.4 gi|435852030|ref|YP_007313616.1| - 8.9e-08 33.2 3.0 8.9e-08 33.2 3.0 3.4 2 1 1 3 3 3 1 Domain of unknown function (DUF5123) DFP PF04127.15 gi|435852031|ref|YP_007313617.1| - 2.9e-48 164.1 0.3 4.6e-46 157.0 0.0 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|435852031|ref|YP_007313617.1| - 3.7e-37 127.5 2.2 5.7e-37 126.9 2.2 1.3 1 0 0 1 1 1 1 Flavoprotein GHMP_kinases_N PF00288.26 gi|435852032|ref|YP_007313618.1| - 2.1e-09 37.5 2.2 8.6e-09 35.5 2.4 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|435852032|ref|YP_007313618.1| - 0.0048 17.2 0.9 0.009 16.4 0.0 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal PPS_PS PF02006.16 gi|435852033|ref|YP_007313619.1| - 9.5e-75 250.0 1.3 1.2e-74 249.7 1.3 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase DUF1722 PF08349.11 gi|435852033|ref|YP_007313619.1| - 0.012 15.9 0.0 0.02 15.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1722) HD PF01966.22 gi|435852034|ref|YP_007313620.1| - 2e-15 57.1 4.7 3.6e-15 56.3 4.7 1.4 1 0 0 1 1 1 1 HD domain DUF4202 PF13875.6 gi|435852034|ref|YP_007313620.1| - 0.0089 16.0 0.4 0.048 13.6 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4202) MIOX PF05153.15 gi|435852034|ref|YP_007313620.1| - 0.084 12.4 0.1 0.14 11.7 0.1 1.4 1 1 0 1 1 1 0 Myo-inositol oxygenase Amidohydro_1 PF01979.20 gi|435852035|ref|YP_007313621.1| - 2.2e-79 267.3 2.7 2.6e-79 267.0 2.7 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|435852035|ref|YP_007313621.1| - 3.1e-24 86.3 0.9 1.7e-17 64.1 0.0 2.2 1 1 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|435852035|ref|YP_007313621.1| - 0.0056 16.1 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Adenosine/AMP deaminase AdoHcyase PF05221.17 gi|435852036|ref|YP_007313622.1| - 3.1e-56 190.7 0.0 1.7e-27 96.4 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|435852036|ref|YP_007313622.1| - 4e-51 173.3 1.1 4e-51 173.3 1.1 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|435852036|ref|YP_007313622.1| - 1.3e-08 34.4 0.2 2.2e-08 33.7 0.2 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|435852036|ref|YP_007313622.1| - 1.3e-05 24.8 0.1 2.4e-05 24.0 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain RNA_pol_Rpb5_C PF01191.19 gi|435852037|ref|YP_007313623.1| - 9.6e-30 102.3 0.1 1.1e-29 102.1 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain CDC48_N PF02359.18 gi|435852037|ref|YP_007313623.1| - 0.034 14.3 0.0 0.038 14.2 0.0 1.1 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Trp_repressor PF01371.19 gi|435852037|ref|YP_007313623.1| - 0.12 12.5 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 Trp repressor protein RNA_pol_Rpb2_1 PF04563.15 gi|435852038|ref|YP_007313624.1| - 2.4e-54 184.0 0.3 3e-54 183.6 0.3 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|435852038|ref|YP_007313624.1| - 1.4e-27 96.5 0.0 2.3e-27 95.9 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|435852038|ref|YP_007313624.1| - 1.3e-26 92.5 0.0 2.3e-26 91.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_6 PF00562.28 gi|435852039|ref|YP_007313625.1| - 7e-126 420.4 0.0 9.4e-126 420.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|435852039|ref|YP_007313625.1| - 7.1e-30 103.3 0.1 1.5e-29 102.2 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|435852039|ref|YP_007313625.1| - 3.5e-21 75.3 1.9 7.2e-21 74.3 1.9 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|435852039|ref|YP_007313625.1| - 2.2e-10 40.9 3.1 1.2e-09 38.6 3.1 2.2 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 DUF1451 PF07295.11 gi|435852039|ref|YP_007313625.1| - 0.01 15.9 0.4 0.019 15.0 0.4 1.4 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-NADH-PPase PF09297.11 gi|435852039|ref|YP_007313625.1| - 0.062 13.0 1.2 0.32 10.7 0.0 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.6 gi|435852039|ref|YP_007313625.1| - 0.083 12.8 0.4 16 5.5 0.0 2.6 2 0 0 2 2 2 0 Nudix N-terminal RNA_pol_Rpb2_45 PF10385.9 gi|435852039|ref|YP_007313625.1| - 0.12 12.6 0.1 0.7 10.2 0.1 2.2 2 0 0 2 2 2 0 RNA polymerase beta subunit external 1 domain RNA_pol_Rpb1_1 PF04997.12 gi|435852040|ref|YP_007313626.1| - 1.2e-106 356.6 0.0 2.1e-106 355.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|435852040|ref|YP_007313626.1| - 3.3e-69 232.3 0.3 5.8e-69 231.6 0.3 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.17 gi|435852040|ref|YP_007313626.1| - 2.4e-33 114.3 0.0 7.7e-33 112.7 0.0 2.0 1 1 1 2 2 2 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.18 gi|435852040|ref|YP_007313626.1| - 6.7e-31 107.4 0.0 1.3e-30 106.4 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|435852040|ref|YP_007313626.1| - 1.8e-28 99.7 0.1 3.6e-28 98.7 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_5 PF04998.17 gi|435852041|ref|YP_007313627.1| - 6.1e-56 189.8 3.1 1.1e-55 189.0 3.1 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF1664 PF07889.12 gi|435852041|ref|YP_007313627.1| - 0.74 9.9 3.5 6.3 6.8 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Ribosomal_L7Ae PF01248.26 gi|435852042|ref|YP_007313628.1| - 1e-13 50.8 0.2 1.3e-13 50.5 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BRCA-2_OB1 PF09103.10 gi|435852042|ref|YP_007313628.1| - 0.14 12.1 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 BRCA2, oligonucleotide/oligosaccharide-binding, domain 1 KH_2 PF07650.17 gi|435852043|ref|YP_007313629.1| - 3.1e-20 71.8 6.2 1.4e-16 60.1 0.4 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|435852043|ref|YP_007313629.1| - 3.9e-15 55.7 3.6 2.9e-14 52.9 1.1 2.3 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|435852043|ref|YP_007313629.1| - 3.6e-05 23.6 1.2 0.021 14.7 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|435852043|ref|YP_007313629.1| - 0.00064 19.5 2.1 0.041 13.7 0.2 2.5 2 1 0 2 2 2 2 KH domain DUF1512 PF07431.12 gi|435852043|ref|YP_007313629.1| - 0.013 14.6 0.1 0.023 13.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1512) Ribosom_S12_S23 PF00164.25 gi|435852044|ref|YP_007313630.1| - 9.2e-47 157.4 0.2 1.3e-46 156.9 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|435852045|ref|YP_007313631.1| - 1.6e-37 128.4 5.7 2e-37 128.1 5.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.27 gi|435852046|ref|YP_007313632.1| - 2.2e-63 213.3 0.4 3.5e-63 212.7 0.4 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|435852046|ref|YP_007313632.1| - 7.9e-30 103.1 0.1 2.4e-29 101.6 0.0 1.9 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|435852046|ref|YP_007313632.1| - 2.2e-24 85.4 2.1 4.4e-24 84.4 0.8 2.1 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|435852046|ref|YP_007313632.1| - 2.9e-23 81.7 0.0 1.3e-22 79.6 0.0 2.2 1 1 1 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|435852046|ref|YP_007313632.1| - 4.1e-16 59.1 0.6 1.3e-15 57.5 0.6 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|435852046|ref|YP_007313632.1| - 2.6e-05 24.3 0.1 8e-05 22.7 0.1 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|435852046|ref|YP_007313632.1| - 0.0046 16.8 0.0 0.012 15.4 0.0 1.7 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain DUF4473 PF14747.6 gi|435852046|ref|YP_007313632.1| - 0.0097 16.4 0.1 0.082 13.5 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4473) Ras PF00071.22 gi|435852046|ref|YP_007313632.1| - 0.044 13.4 0.0 0.083 12.5 0.0 1.3 1 0 0 1 1 1 0 Ras family DUF2888 PF11135.8 gi|435852046|ref|YP_007313632.1| - 0.13 12.2 0.0 0.36 10.8 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2888) GTP_EFTU PF00009.27 gi|435852047|ref|YP_007313633.1| - 4.2e-58 196.1 0.0 5e-58 195.8 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|435852047|ref|YP_007313633.1| - 1.1e-37 128.8 0.1 3e-37 127.3 0.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|435852047|ref|YP_007313633.1| - 6.2e-16 58.6 2.1 2e-15 56.9 2.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|435852047|ref|YP_007313633.1| - 2.3e-06 27.7 0.0 2.8e-05 24.2 0.0 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.6 gi|435852047|ref|YP_007313633.1| - 0.00062 19.6 0.8 0.0013 18.5 0.8 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Ras PF00071.22 gi|435852047|ref|YP_007313633.1| - 0.0017 18.0 0.1 0.013 15.1 0.0 2.1 2 1 0 2 2 2 1 Ras family FeoB_N PF02421.18 gi|435852047|ref|YP_007313633.1| - 0.0025 17.3 0.1 0.073 12.6 0.1 2.6 2 1 0 2 2 2 1 Ferrous iron transport protein B Gtr1_RagA PF04670.12 gi|435852047|ref|YP_007313633.1| - 0.0096 15.3 0.0 0.11 11.8 0.0 2.0 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region Dynamin_N PF00350.23 gi|435852047|ref|YP_007313633.1| - 0.013 15.5 0.0 2.3 8.3 0.0 2.5 1 1 0 1 1 1 0 Dynamin family Roc PF08477.13 gi|435852047|ref|YP_007313633.1| - 0.062 13.5 0.0 9 6.5 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Septin PF00735.18 gi|435852047|ref|YP_007313633.1| - 0.086 12.1 0.0 0.22 10.7 0.0 1.6 1 1 0 1 1 1 0 Septin NTP_transf_3 PF12804.7 gi|435852047|ref|YP_007313633.1| - 0.14 12.5 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 MobA-like NTP transferase domain Ribosomal_S10 PF00338.22 gi|435852048|ref|YP_007313634.1| - 2.3e-26 91.9 0.0 2.6e-26 91.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e DEAD PF00270.29 gi|435852049|ref|YP_007313635.1| - 3.5e-51 173.4 0.0 1.6e-50 171.3 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|435852049|ref|YP_007313635.1| - 1.7e-33 115.3 0.1 9.5e-33 112.9 0.3 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|435852049|ref|YP_007313635.1| - 1.4e-07 31.7 0.0 7.7e-07 29.3 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UTP25 PF06862.12 gi|435852049|ref|YP_007313635.1| - 8.6e-06 24.8 0.1 0.002 17.0 0.1 3.1 2 1 0 2 2 2 1 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 AAA_30 PF13604.6 gi|435852049|ref|YP_007313635.1| - 1.7e-05 24.6 0.0 8e-05 22.4 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|435852049|ref|YP_007313635.1| - 0.0027 18.0 0.0 0.069 13.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain ERCC3_RAD25_C PF16203.5 gi|435852049|ref|YP_007313635.1| - 0.051 12.8 0.0 0.075 12.2 0.0 1.2 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase AAA_22 PF13401.6 gi|435852049|ref|YP_007313635.1| - 0.36 11.1 1.4 3.3 8.0 0.7 2.6 2 1 0 2 2 2 0 AAA domain AXE1 PF05448.12 gi|435852050|ref|YP_007313636.1| - 2e-10 39.9 0.4 8.9e-10 37.7 0.1 2.2 2 1 0 2 2 2 1 Acetyl xylan esterase (AXE1) Hydrolase_4 PF12146.8 gi|435852050|ref|YP_007313636.1| - 5.2e-10 39.0 0.0 5e-07 29.2 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|435852050|ref|YP_007313636.1| - 1.3e-09 37.9 0.1 2.6e-09 37.0 0.1 1.5 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|435852050|ref|YP_007313636.1| - 2.3e-07 30.8 0.0 5e-06 26.3 0.0 2.2 1 1 1 2 2 2 1 alpha/beta hydrolase fold BAAT_C PF08840.11 gi|435852050|ref|YP_007313636.1| - 2.8e-06 27.4 0.0 4.7e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S9 PF00326.21 gi|435852050|ref|YP_007313636.1| - 3.3e-06 26.7 0.1 4.7e-05 23.0 0.1 2.2 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_3 PF07859.13 gi|435852050|ref|YP_007313636.1| - 0.01 15.7 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold Abhydrolase_5 PF12695.7 gi|435852050|ref|YP_007313636.1| - 0.025 14.4 0.1 2.7 7.7 0.1 2.9 1 1 0 1 1 1 0 Alpha/beta hydrolase family Esterase PF00756.20 gi|435852050|ref|YP_007313636.1| - 0.2 11.3 0.0 0.26 10.9 0.0 1.2 1 0 0 1 1 1 0 Putative esterase HAD_2 PF13419.6 gi|435852051|ref|YP_007313637.1| - 1.6e-27 96.8 0.0 2.1e-27 96.3 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|435852051|ref|YP_007313637.1| - 5.2e-19 69.4 0.0 7.5e-18 65.6 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|435852051|ref|YP_007313637.1| - 1e-10 41.5 0.0 1.9e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|435852051|ref|YP_007313637.1| - 3.3e-06 27.6 0.0 6.5e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|435852051|ref|YP_007313637.1| - 0.018 15.1 0.1 0.069 13.3 0.0 1.9 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.14 gi|435852051|ref|YP_007313637.1| - 0.023 14.3 0.0 0.67 9.5 0.0 2.2 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) FAD_binding_3 PF01494.19 gi|435852052|ref|YP_007313638.1| - 5.2e-18 65.4 2.7 2.3e-06 27.1 0.0 3.0 3 0 0 3 3 3 3 FAD binding domain FAD_oxidored PF12831.7 gi|435852052|ref|YP_007313638.1| - 3.5e-14 53.0 0.4 5.3e-14 52.4 0.4 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|435852052|ref|YP_007313638.1| - 3.7e-10 39.9 3.4 1.4e-06 28.2 0.3 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|435852052|ref|YP_007313638.1| - 4.9e-10 39.0 0.1 1.2e-06 27.8 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|435852052|ref|YP_007313638.1| - 8.6e-10 38.3 1.8 8.6e-10 38.3 1.8 2.7 2 2 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|435852052|ref|YP_007313638.1| - 6.9e-07 28.5 3.3 0.0061 15.5 1.4 2.7 1 1 1 2 2 2 2 Tryptophan halogenase Thi4 PF01946.17 gi|435852052|ref|YP_007313638.1| - 7.1e-07 28.7 0.3 1.3e-06 27.8 0.1 1.5 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|435852052|ref|YP_007313638.1| - 9.3e-07 27.9 1.7 5.5e-06 25.3 0.5 2.0 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|435852052|ref|YP_007313638.1| - 2.5e-05 24.4 0.3 2.5e-05 24.4 0.3 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|435852052|ref|YP_007313638.1| - 4.2e-05 22.8 0.5 4.2e-05 22.8 0.5 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|435852052|ref|YP_007313638.1| - 0.00012 21.3 5.3 0.00067 18.9 1.4 2.3 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|435852052|ref|YP_007313638.1| - 0.0019 18.7 1.1 0.02 15.5 0.5 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|435852052|ref|YP_007313638.1| - 0.0042 17.5 0.2 0.0078 16.6 0.2 1.6 1 1 0 1 1 1 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|435852052|ref|YP_007313638.1| - 0.025 13.9 0.7 0.025 13.9 0.7 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|435852052|ref|YP_007313638.1| - 0.028 14.7 0.5 0.088 13.1 0.2 1.9 2 0 0 2 2 2 0 TrkA-N domain L_biotic_typeA PF04604.13 gi|435852052|ref|YP_007313638.1| - 0.095 12.6 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Type-A lantibiotic Pyr_redox_3 PF13738.6 gi|435852052|ref|YP_007313638.1| - 0.097 11.9 1.5 0.19 11.0 0.9 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GMC_oxred_N PF00732.19 gi|435852052|ref|YP_007313638.1| - 0.11 11.9 0.2 0.4 10.0 0.0 1.9 2 0 0 2 2 2 0 GMC oxidoreductase 3HCDH_N PF02737.18 gi|435852052|ref|YP_007313638.1| - 0.17 11.7 0.6 0.33 10.8 0.6 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATP-synt_8 PF00895.20 gi|435852053|ref|YP_007313639.1| - 0.4 11.2 2.8 0.37 11.3 2.8 1.1 1 0 0 1 1 1 0 ATP synthase protein 8 ACT PF01842.25 gi|435852054|ref|YP_007313640.1| - 2.2e-05 24.1 0.3 6.6e-05 22.6 0.3 1.9 1 1 0 1 1 1 1 ACT domain HMGL-like PF00682.19 gi|435852055|ref|YP_007313641.1| - 4.1e-38 131.5 0.0 5.5e-38 131.0 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Iso_dh PF00180.20 gi|435852056|ref|YP_007313642.1| - 7.1e-85 285.2 0.0 8.7e-85 284.9 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase TatD_DNase PF01026.21 gi|435852057|ref|YP_007313643.1| - 3.8e-21 75.6 0.0 4.9e-21 75.3 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 gi|435852057|ref|YP_007313643.1| - 0.028 13.7 0.5 0.47 9.7 0.2 2.5 2 1 0 2 2 2 0 Amidohydrolase family DUF4147 PF13660.6 gi|435852058|ref|YP_007313644.1| - 1.7e-80 269.9 0.0 2.5e-80 269.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|435852058|ref|YP_007313644.1| - 3.8e-38 130.0 3.7 7.7e-38 129.0 3.7 1.6 1 0 0 1 1 1 1 MOFRL family Peptidase_C13 PF01650.18 gi|435852058|ref|YP_007313644.1| - 0.12 11.9 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Peptidase C13 family HxlR PF01638.17 gi|435852059|ref|YP_007313645.1| - 1e-22 79.7 0.1 1.2e-22 79.5 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix DUF2513 PF10711.9 gi|435852059|ref|YP_007313645.1| - 1.8e-06 28.2 0.2 3.3e-06 27.3 0.0 1.4 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) HTH_20 PF12840.7 gi|435852059|ref|YP_007313645.1| - 0.00037 20.5 0.0 0.00063 19.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|435852059|ref|YP_007313645.1| - 0.00097 18.7 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|435852059|ref|YP_007313645.1| - 0.0039 17.0 0.0 0.0088 15.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|435852059|ref|YP_007313645.1| - 0.0049 16.8 0.0 0.0085 16.0 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4423 PF14394.6 gi|435852059|ref|YP_007313645.1| - 0.017 14.9 0.0 0.02 14.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_12 PF08461.10 gi|435852059|ref|YP_007313645.1| - 0.021 14.7 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain MarR PF01047.22 gi|435852059|ref|YP_007313645.1| - 0.024 14.5 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 MarR family Replic_Relax PF13814.6 gi|435852059|ref|YP_007313645.1| - 0.035 14.2 0.0 0.044 13.8 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation MarR_2 PF12802.7 gi|435852059|ref|YP_007313645.1| - 0.038 13.9 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF438 PF04282.13 gi|435852059|ref|YP_007313645.1| - 0.079 12.9 0.3 0.079 12.9 0.3 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF438) HTH_Crp_2 PF13545.6 gi|435852059|ref|YP_007313645.1| - 0.08 12.9 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Cupin_2 PF07883.11 gi|435852060|ref|YP_007313646.1| - 2.6e-08 33.5 0.0 3.4e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|435852060|ref|YP_007313646.1| - 4.3e-07 29.9 0.0 5.6e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Ectoine_synth PF06339.12 gi|435852060|ref|YP_007313646.1| - 0.0013 18.9 0.0 0.0016 18.6 0.0 1.2 1 0 0 1 1 1 1 Ectoine synthase EutQ PF06249.12 gi|435852060|ref|YP_007313646.1| - 0.0031 17.3 0.0 0.0071 16.1 0.0 1.6 1 1 0 1 1 1 1 Ethanolamine utilisation protein EutQ Cupin_3 PF05899.12 gi|435852060|ref|YP_007313646.1| - 0.015 15.0 0.0 0.022 14.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) ARD PF03079.14 gi|435852060|ref|YP_007313646.1| - 0.018 15.2 0.0 0.021 15.0 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family MannoseP_isomer PF01050.18 gi|435852060|ref|YP_007313646.1| - 0.03 14.2 0.0 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Pirin_C PF05726.13 gi|435852060|ref|YP_007313646.1| - 0.063 13.6 0.1 0.18 12.2 0.0 1.7 1 1 1 2 2 2 0 Pirin C-terminal cupin domain 3-HAO PF06052.12 gi|435852060|ref|YP_007313646.1| - 0.068 12.8 0.0 0.072 12.7 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyanthranilic acid dioxygenase Cupin_6 PF12852.7 gi|435852060|ref|YP_007313646.1| - 0.11 12.2 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Cupin AraC_binding_2 PF14525.6 gi|435852060|ref|YP_007313646.1| - 0.14 11.9 0.0 0.16 11.7 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain CGGC PF08821.11 gi|435852061|ref|YP_007313647.1| - 8.5e-35 119.1 1.4 9.7e-35 119.0 1.4 1.0 1 0 0 1 1 1 1 CGGC domain Fer4_21 PF14697.6 gi|435852062|ref|YP_007313648.1| - 1.7e-09 37.7 7.0 1.7e-09 37.7 7.0 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|435852062|ref|YP_007313648.1| - 3.5e-07 29.8 12.1 3.9e-05 23.3 4.6 3.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|435852062|ref|YP_007313648.1| - 6.6e-07 30.2 14.6 0.00096 20.0 5.2 2.6 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|435852062|ref|YP_007313648.1| - 1.3e-06 28.9 12.2 0.0074 16.9 0.7 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435852062|ref|YP_007313648.1| - 1.2e-05 25.1 3.7 1.2e-05 25.1 3.7 3.9 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435852062|ref|YP_007313648.1| - 3.4e-05 23.9 6.7 3.4e-05 23.9 6.7 3.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435852062|ref|YP_007313648.1| - 0.00013 21.8 2.1 0.00013 21.8 2.1 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435852062|ref|YP_007313648.1| - 0.00025 21.1 8.3 0.00025 21.1 8.3 3.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|435852062|ref|YP_007313648.1| - 0.00037 21.2 7.8 0.14 12.9 7.6 2.7 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|435852062|ref|YP_007313648.1| - 0.084 13.4 12.4 0.62 10.6 0.7 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|435852062|ref|YP_007313648.1| - 0.13 13.1 1.6 0.13 13.1 1.6 3.1 2 1 1 3 3 2 0 4Fe-4S dicluster domain GXGXG PF01493.19 gi|435852063|ref|YP_007313649.1| - 9.4e-13 48.2 7.3 1.8e-09 37.5 3.2 2.3 2 0 0 2 2 2 2 GXGXG motif PMSR PF01625.21 gi|435852064|ref|YP_007313650.1| - 1.3e-66 223.5 0.7 1.4e-66 223.4 0.7 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase PK PF00224.21 gi|435852065|ref|YP_007313651.1| - 8.9e-121 403.0 1.8 1.1e-120 402.7 1.8 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|435852065|ref|YP_007313651.1| - 2.1e-21 76.3 0.0 2.7e-20 72.7 0.0 2.7 3 0 0 3 3 3 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|435852065|ref|YP_007313651.1| - 3.7e-05 23.0 2.7 7.1e-05 22.0 0.3 2.1 1 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family FAD_binding_4 PF01565.23 gi|435852066|ref|YP_007313652.1| - 4e-35 120.6 0.2 9.1e-35 119.4 0.1 1.7 2 0 0 2 2 2 1 FAD binding domain CCG PF02754.16 gi|435852066|ref|YP_007313652.1| - 5.5e-33 113.0 4.0 9.2e-16 57.8 0.2 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_17 PF13534.6 gi|435852066|ref|YP_007313652.1| - 4.7e-09 36.7 5.4 4.7e-09 36.7 5.4 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|435852066|ref|YP_007313652.1| - 2.1e-05 24.9 5.9 6e-05 23.4 5.9 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435852066|ref|YP_007313652.1| - 0.0011 19.6 5.6 0.0033 18.0 5.6 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435852066|ref|YP_007313652.1| - 0.0028 17.8 7.5 0.003 17.7 5.0 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain FAD-oxidase_C PF02913.19 gi|435852066|ref|YP_007313652.1| - 0.0072 16.0 0.0 0.029 14.0 0.0 2.0 1 1 0 1 1 1 1 FAD linked oxidases, C-terminal domain G3P_antiterm PF04309.12 gi|435852066|ref|YP_007313652.1| - 1.6 8.1 9.2 0.69 9.3 0.3 3.6 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator DUF1328 PF07043.13 gi|435852067|ref|YP_007313653.1| - 7.4e-14 51.7 12.5 9.6e-14 51.3 12.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) SecG PF03840.14 gi|435852067|ref|YP_007313653.1| - 0.22 11.6 12.1 0.13 12.3 3.3 2.0 1 1 1 2 2 2 0 Preprotein translocase SecG subunit COX2-transmemb PF09125.10 gi|435852067|ref|YP_007313653.1| - 6.7 6.6 10.5 0.35 10.7 1.4 2.1 2 0 0 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane Tetraspanin PF00335.20 gi|435852067|ref|YP_007313653.1| - 7 6.3 8.4 7.6 6.2 8.4 1.0 1 0 0 1 1 1 0 Tetraspanin family UvrA_inter PF17760.1 gi|435852068|ref|YP_007313654.1| - 2e-38 130.8 0.9 5e-38 129.5 0.9 1.8 1 0 0 1 1 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|435852068|ref|YP_007313654.1| - 5.1e-35 120.2 0.1 5.1e-33 113.7 0.1 3.2 3 0 0 3 3 3 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|435852068|ref|YP_007313654.1| - 7.3e-20 71.9 0.3 9.2e-09 35.9 0.0 4.4 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|435852068|ref|YP_007313654.1| - 6.1e-13 48.7 0.4 0.0077 15.7 0.0 4.2 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|435852068|ref|YP_007313654.1| - 1.1e-07 32.5 0.0 0.01 16.3 0.0 3.0 3 0 0 3 3 2 2 AAA ATPase domain DnaJ_CXXCXGXG PF00684.19 gi|435852068|ref|YP_007313654.1| - 9.5e-07 29.1 4.3 0.1 13.0 0.2 3.6 3 0 0 3 3 3 2 DnaJ central domain RsgA_GTPase PF03193.16 gi|435852068|ref|YP_007313654.1| - 3.5e-06 27.0 0.1 0.032 14.2 0.0 2.6 2 0 0 2 2 2 2 RsgA GTPase AAA_21 PF13304.6 gi|435852068|ref|YP_007313654.1| - 5e-06 26.5 8.1 0.00013 21.9 0.0 4.0 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|435852068|ref|YP_007313654.1| - 5.3e-06 26.1 0.1 0.097 12.4 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|435852068|ref|YP_007313654.1| - 2.6e-05 24.5 0.1 0.55 10.5 0.0 3.5 3 0 0 3 3 3 2 AAA domain BCA_ABC_TP_C PF12399.8 gi|435852068|ref|YP_007313654.1| - 0.0001 22.1 1.3 0.11 12.4 0.1 2.5 2 0 0 2 2 2 2 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|435852068|ref|YP_007313654.1| - 0.00012 22.7 0.2 0.11 12.9 0.1 2.8 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|435852068|ref|YP_007313654.1| - 0.00019 21.4 0.2 1.2 9.0 0.0 3.2 3 0 0 3 3 2 2 Adenylylsulphate kinase AAA_18 PF13238.6 gi|435852068|ref|YP_007313654.1| - 0.00026 21.6 0.4 1.3 9.5 0.0 3.2 3 0 0 3 3 2 2 AAA domain ATPase_2 PF01637.18 gi|435852068|ref|YP_007313654.1| - 0.00057 19.9 0.1 1.8 8.4 0.0 2.8 2 0 0 2 2 2 2 ATPase domain predominantly from Archaea Viral_helicase1 PF01443.18 gi|435852068|ref|YP_007313654.1| - 0.00059 19.6 0.1 0.025 14.3 0.0 2.7 3 0 0 3 3 2 1 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 gi|435852068|ref|YP_007313654.1| - 0.00067 19.7 0.1 4.2 7.4 0.0 3.8 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.6 gi|435852068|ref|YP_007313654.1| - 0.0011 18.8 0.1 0.59 9.8 0.0 3.3 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|435852068|ref|YP_007313654.1| - 0.0021 18.2 0.0 4.6 7.4 0.0 3.4 4 0 0 4 4 3 0 AAA domain DUF2075 PF09848.9 gi|435852068|ref|YP_007313654.1| - 0.0025 17.1 0.0 1.5 8.0 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) MMR_HSR1 PF01926.23 gi|435852068|ref|YP_007313654.1| - 0.0026 17.8 0.9 0.31 11.1 0.1 3.3 3 0 0 3 3 3 1 50S ribosome-binding GTPase cobW PF02492.19 gi|435852068|ref|YP_007313654.1| - 0.005 16.4 0.3 0.64 9.6 0.1 2.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.6 gi|435852068|ref|YP_007313654.1| - 0.0064 16.1 0.0 0.19 11.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|435852068|ref|YP_007313654.1| - 0.0095 15.0 0.0 3.8 6.5 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_7 PF12775.7 gi|435852068|ref|YP_007313654.1| - 0.011 15.3 0.0 2.6 7.5 0.0 2.7 2 0 0 2 2 2 0 P-loop containing dynein motor region Zn-ribbon_8 PF09723.10 gi|435852068|ref|YP_007313654.1| - 0.011 15.8 12.9 0.023 14.8 2.1 3.7 4 0 0 4 4 3 0 Zinc ribbon domain PRK PF00485.18 gi|435852068|ref|YP_007313654.1| - 0.021 14.6 0.2 2.4 7.9 0.0 2.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family YwpF PF14183.6 gi|435852068|ref|YP_007313654.1| - 0.022 14.8 0.0 0.065 13.2 0.0 1.7 1 0 0 1 1 1 0 YwpF-like protein NACHT PF05729.12 gi|435852068|ref|YP_007313654.1| - 0.039 13.9 0.0 7.1 6.5 0.0 2.4 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.12 gi|435852068|ref|YP_007313654.1| - 0.046 13.0 0.0 11 5.2 0.0 2.6 2 0 0 2 2 2 0 Zeta toxin HypA PF01155.19 gi|435852068|ref|YP_007313654.1| - 0.047 13.7 0.7 0.66 10.0 0.0 3.0 3 0 0 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NB-ARC PF00931.22 gi|435852068|ref|YP_007313654.1| - 0.054 12.7 0.0 7.7 5.6 0.0 3.4 3 0 0 3 3 3 0 NB-ARC domain ATPase PF06745.13 gi|435852068|ref|YP_007313654.1| - 0.059 12.7 0.0 7.8 5.8 0.0 2.7 2 0 0 2 2 2 0 KaiC AAA_30 PF13604.6 gi|435852068|ref|YP_007313654.1| - 0.061 13.0 0.0 17 5.0 0.0 3.1 3 0 0 3 3 3 0 AAA domain Ribosomal_L12 PF00542.19 gi|435852068|ref|YP_007313654.1| - 0.068 13.5 0.1 0.79 10.1 0.0 2.8 2 0 0 2 2 2 0 Ribosomal protein L7/L12 C-terminal domain IIGP PF05049.13 gi|435852068|ref|YP_007313654.1| - 0.07 12.2 0.2 0.7 8.9 0.0 2.5 3 0 0 3 3 3 0 Interferon-inducible GTPase (IIGP) RNA_helicase PF00910.22 gi|435852068|ref|YP_007313654.1| - 0.085 13.3 0.0 6.3 7.2 0.0 2.6 2 0 0 2 2 2 0 RNA helicase Sigma54_activat PF00158.26 gi|435852068|ref|YP_007313654.1| - 0.14 11.9 0.0 4.2 7.1 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain TF_Zn_Ribbon PF08271.12 gi|435852068|ref|YP_007313654.1| - 0.14 11.7 7.7 2 8.0 0.1 3.9 4 0 0 4 4 3 0 TFIIB zinc-binding AAA_15 PF13175.6 gi|435852068|ref|YP_007313654.1| - 1 9.0 7.2 4.3 6.9 0.0 3.9 4 1 0 4 4 4 0 AAA ATPase domain zinc_ribbon_9 PF14369.6 gi|435852068|ref|YP_007313654.1| - 1.2 9.4 6.0 4.7 7.6 0.0 3.2 3 0 0 3 3 3 0 zinc-ribbon DZR PF12773.7 gi|435852068|ref|YP_007313654.1| - 2.9 8.0 7.2 1.6 8.8 0.3 3.0 4 0 0 4 4 2 0 Double zinc ribbon DUF35_N PF12172.8 gi|435852068|ref|YP_007313654.1| - 7.8 6.5 9.9 32 4.5 0.1 4.2 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.6 gi|435852068|ref|YP_007313654.1| - 8.9 5.9 8.6 15 5.2 0.2 3.0 3 0 0 3 3 2 0 zinc-ribbon domain Lyase_1 PF00206.20 gi|435852069|ref|YP_007313655.1| - 3.1e-53 181.2 1.2 3.1e-53 181.2 1.2 1.6 2 0 0 2 2 2 1 Lyase ADSL_C PF10397.9 gi|435852069|ref|YP_007313655.1| - 1.7e-21 76.6 0.4 4.4e-21 75.2 0.0 1.9 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus FumaraseC_C PF10415.9 gi|435852069|ref|YP_007313655.1| - 0.011 16.2 0.1 0.054 13.9 0.0 2.3 2 0 0 2 2 2 0 Fumarase C C-terminus ASL_C2 PF14698.6 gi|435852069|ref|YP_007313655.1| - 0.028 15.2 0.1 0.13 13.1 0.0 2.2 2 0 0 2 2 2 0 Argininosuccinate lyase C-terminal TPR_1 PF00515.28 gi|435852070|ref|YP_007313656.1| - 3.7e-140 450.7 45.3 8.3e-10 38.1 0.1 24.8 25 0 0 25 25 25 22 Tetratricopeptide repeat TPR_2 PF07719.17 gi|435852070|ref|YP_007313656.1| - 1e-134 428.1 31.5 1.7e-07 30.8 0.1 24.3 24 0 0 24 24 24 22 Tetratricopeptide repeat TPR_11 PF13414.6 gi|435852070|ref|YP_007313656.1| - 4.3e-94 308.0 62.9 2.7e-08 33.3 0.1 22.6 12 5 12 24 24 23 19 TPR repeat TPR_8 PF13181.6 gi|435852070|ref|YP_007313656.1| - 9.8e-94 299.9 53.9 2.6e-06 27.2 0.1 24.0 25 0 0 25 25 24 19 Tetratricopeptide repeat TPR_16 PF13432.6 gi|435852070|ref|YP_007313656.1| - 2.8e-90 296.7 11.6 5e-10 39.9 0.0 14.2 10 4 3 15 15 14 11 Tetratricopeptide repeat TPR_17 PF13431.6 gi|435852070|ref|YP_007313656.1| - 6.8e-76 245.4 45.0 6.9e-05 23.0 0.0 23.0 24 0 0 24 24 22 16 Tetratricopeptide repeat TPR_14 PF13428.6 gi|435852070|ref|YP_007313656.1| - 2.4e-65 211.6 18.2 2.6e-05 24.6 0.1 22.1 5 5 19 24 24 24 13 Tetratricopeptide repeat TPR_9 PF13371.6 gi|435852070|ref|YP_007313656.1| - 5e-60 199.6 5.6 1.3e-05 25.2 0.1 14.8 5 4 11 17 17 17 13 Tetratricopeptide repeat TPR_19 PF14559.6 gi|435852070|ref|YP_007313656.1| - 8.2e-58 192.8 32.8 3.8e-06 27.3 1.2 13.9 9 3 5 16 16 15 13 Tetratricopeptide repeat TPR_12 PF13424.6 gi|435852070|ref|YP_007313656.1| - 6.1e-53 177.0 44.4 1.1e-05 25.7 0.2 17.1 10 7 6 17 17 17 13 Tetratricopeptide repeat TPR_6 PF13174.6 gi|435852070|ref|YP_007313656.1| - 3.5e-48 159.1 35.2 0.00021 21.7 0.0 21.9 22 0 0 22 22 21 8 Tetratricopeptide repeat TPR_7 PF13176.6 gi|435852070|ref|YP_007313656.1| - 4e-44 145.4 41.6 0.0007 19.5 0.0 21.7 22 1 0 22 22 22 8 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|435852070|ref|YP_007313656.1| - 6.9e-37 125.5 32.0 3.3e-06 27.2 0.4 9.5 5 2 4 9 9 9 7 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.6 gi|435852070|ref|YP_007313656.1| - 1e-25 89.5 29.4 0.0079 16.2 0.0 16.9 13 3 5 18 18 17 6 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 gi|435852070|ref|YP_007313656.1| - 5.5e-23 81.7 12.3 0.0071 15.3 0.1 10.0 5 4 3 10 10 10 6 NMDA receptor-regulated protein 1 DUF3856 PF12968.7 gi|435852070|ref|YP_007313656.1| - 6.1e-18 65.3 9.9 0.76 9.8 0.1 13.8 8 3 7 16 16 14 2 Domain of Unknown Function (DUF3856) TPR_10 PF13374.6 gi|435852070|ref|YP_007313656.1| - 1.5e-12 47.0 32.7 0.68 9.9 0.0 15.6 18 0 0 18 18 17 3 Tetratricopeptide repeat TPR_3 PF07720.12 gi|435852070|ref|YP_007313656.1| - 1.6e-12 47.2 33.5 0.19 11.7 0.1 13.4 15 0 0 15 15 12 4 Tetratricopeptide repeat MIT PF04212.18 gi|435852070|ref|YP_007313656.1| - 1.7e-12 47.2 50.7 0.17 12.0 0.0 15.9 18 0 0 18 18 16 4 MIT (microtubule interacting and transport) domain TPR_15 PF13429.6 gi|435852070|ref|YP_007313656.1| - 6.6e-12 45.2 13.1 0.01 15.0 0.0 8.8 6 4 3 10 10 10 3 Tetratricopeptide repeat BTAD PF03704.17 gi|435852070|ref|YP_007313656.1| - 1e-11 45.5 13.4 0.18 12.2 0.9 7.9 5 3 3 8 8 8 3 Bacterial transcriptional activator domain PknG_TPR PF16918.5 gi|435852070|ref|YP_007313656.1| - 8.7e-08 31.3 3.2 0.00071 18.4 0.1 4.9 3 2 3 6 6 6 1 Protein kinase G tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|435852070|ref|YP_007313656.1| - 2.6e-06 27.9 8.8 3.2 8.2 0.1 6.6 5 2 2 7 7 7 1 Alkyl sulfatase dimerisation TPR_4 PF07721.14 gi|435852070|ref|YP_007313656.1| - 2.1e-05 24.7 0.1 94 4.1 0.0 8.3 8 0 0 8 8 6 0 Tetratricopeptide repeat TPR_5 PF12688.7 gi|435852070|ref|YP_007313656.1| - 0.00012 22.3 12.3 19 5.5 0.0 8.9 7 3 2 9 9 7 0 Tetratrico peptide repeat NRBF2_MIT PF17169.4 gi|435852070|ref|YP_007313656.1| - 0.00019 21.6 0.0 23 5.3 0.0 7.2 9 1 0 9 9 6 0 MIT domain of nuclear receptor-binding factor 2 SRP_TPR_like PF17004.5 gi|435852070|ref|YP_007313656.1| - 0.00039 20.4 30.1 0.37 10.8 0.9 8.0 4 2 3 9 9 8 3 Putative TPR-like repeat TPR_20 PF14561.6 gi|435852070|ref|YP_007313656.1| - 0.0007 19.9 15.3 3.5 8.0 0.1 7.4 5 1 3 8 8 8 1 Tetratricopeptide repeat RPN7 PF10602.9 gi|435852070|ref|YP_007313656.1| - 0.0089 15.7 16.6 29 4.3 0.0 9.5 8 4 4 12 12 10 0 26S proteasome subunit RPN7 TPR_21 PF09976.9 gi|435852070|ref|YP_007313656.1| - 0.0099 15.6 0.0 0.0099 15.6 0.0 5.8 5 2 2 7 7 7 1 Tetratricopeptide repeat-like domain SMG1 PF15785.5 gi|435852070|ref|YP_007313656.1| - 0.019 13.4 1.4 1.9 6.8 0.0 3.5 4 0 0 4 4 4 0 Serine/threonine-protein kinase smg-1 PPTA PF01239.22 gi|435852070|ref|YP_007313656.1| - 0.038 13.7 3.4 22 5.0 0.0 5.2 5 0 0 5 5 5 0 Protein prenyltransferase alpha subunit repeat ChAPs PF09295.10 gi|435852070|ref|YP_007313656.1| - 0.059 12.4 1.1 2.5 7.0 0.0 3.2 3 0 0 3 3 3 0 ChAPs (Chs5p-Arf1p-binding proteins) CAGE1 PF15066.6 gi|435852070|ref|YP_007313656.1| - 0.077 11.7 0.6 0.13 10.9 0.6 1.2 1 0 0 1 1 1 0 Cancer-associated gene protein 1 family Aida_N PF08910.10 gi|435852070|ref|YP_007313656.1| - 0.42 11.0 12.1 59 4.1 0.1 7.3 5 3 3 9 9 6 0 Aida N-terminus Coatomer_E PF04733.14 gi|435852070|ref|YP_007313656.1| - 0.93 8.9 10.7 7.1 5.9 0.6 4.2 4 1 0 4 4 3 0 Coatomer epsilon subunit Paf67 PF10255.9 gi|435852070|ref|YP_007313656.1| - 2.8 6.9 13.0 0.24 10.4 0.2 4.8 5 1 1 6 6 6 0 RNA polymerase I-associated factor PAF67 DUF2225 PF09986.9 gi|435852070|ref|YP_007313656.1| - 3.9 7.1 22.0 5.3 6.7 0.2 5.9 4 2 2 6 6 6 0 Uncharacterized protein conserved in bacteria (DUF2225) AzlD PF05437.12 gi|435852071|ref|YP_007313657.1| - 9.6e-23 80.2 5.9 1.1e-22 80.0 5.9 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) AzlC PF03591.14 gi|435852072|ref|YP_007313658.1| - 2.4e-41 141.4 11.3 2.4e-41 141.4 11.3 1.9 2 0 0 2 2 2 1 AzlC protein RuBisCO_large PF00016.20 gi|435852073|ref|YP_007313659.1| - 1.3e-90 303.6 0.1 2.1e-66 224.1 0.0 2.1 1 1 1 2 2 2 2 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|435852073|ref|YP_007313659.1| - 1.9e-28 99.0 0.0 4.3e-28 97.9 0.0 1.6 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain EamA PF00892.20 gi|435852074|ref|YP_007313660.1| - 2.2e-17 63.5 43.5 5.3e-13 49.3 15.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|435852074|ref|YP_007313660.1| - 0.14 12.2 0.2 0.14 12.2 0.2 2.4 2 1 0 2 2 2 0 Putative transmembrane family 234 MtrG PF04210.13 gi|435852074|ref|YP_007313660.1| - 7.3 6.5 6.3 0.34 10.8 0.5 1.8 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF4112 PF13430.6 gi|435852076|ref|YP_007313662.1| - 0.041 14.1 0.2 0.045 14.0 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4112) AlbA_2 PF04326.14 gi|435852077|ref|YP_007313663.1| - 8.9e-20 71.2 0.3 8.9e-20 71.2 0.3 1.9 2 0 0 2 2 2 1 Putative DNA-binding domain DUF2227 PF09988.9 gi|435852078|ref|YP_007313664.1| - 1.6e-34 119.3 9.3 1.1e-32 113.2 9.3 2.1 1 1 0 1 1 1 1 Uncharacterized metal-binding protein (DUF2227) YdjM PF04307.14 gi|435852078|ref|YP_007313664.1| - 1.1e-05 24.8 3.0 2.3e-05 23.8 3.0 1.5 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF1724 PF08350.10 gi|435852079|ref|YP_007313665.1| - 1.5e-18 66.6 1.1 1.9e-18 66.4 0.1 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_45 PF14947.6 gi|435852079|ref|YP_007313665.1| - 0.18 11.8 1.4 0.31 11.1 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix Spo0A_C PF08769.11 gi|435852080|ref|YP_007313666.1| - 8.5e-05 22.6 1.6 0.0085 16.2 0.6 2.3 1 1 1 2 2 2 1 Sporulation initiation factor Spo0A C terminal Perilipin PF03036.16 gi|435852080|ref|YP_007313666.1| - 0.019 14.0 11.1 0.047 12.7 11.1 1.7 1 1 0 1 1 1 0 Perilipin family DUF5446 PF17522.2 gi|435852080|ref|YP_007313666.1| - 0.065 13.4 4.7 2.6 8.3 0.5 3.0 1 1 3 4 4 4 0 Family of unknown function (DUF5446) ATP-synt_B PF00430.18 gi|435852080|ref|YP_007313666.1| - 0.088 12.9 6.8 0.11 12.6 5.7 1.7 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) ARGLU PF15346.6 gi|435852080|ref|YP_007313666.1| - 0.1 12.5 2.6 0.61 10.0 1.8 2.0 1 1 2 3 3 3 0 Arginine and glutamate-rich 1 Phe_tRNA-synt_N PF02912.18 gi|435852080|ref|YP_007313666.1| - 0.12 12.4 8.5 4.3 7.3 0.6 3.7 1 1 1 2 2 2 0 Aminoacyl tRNA synthetase class II, N-terminal domain MT0933_antitox PF14013.6 gi|435852080|ref|YP_007313666.1| - 0.14 12.5 4.3 2.2 8.6 3.7 2.9 2 1 0 2 2 2 0 MT0933-like antitoxin protein RNA_pol_Rpb1_4 PF05000.17 gi|435852080|ref|YP_007313666.1| - 0.32 10.9 6.2 0.49 10.4 2.0 2.5 1 1 1 2 2 2 0 RNA polymerase Rpb1, domain 4 Terminase_6C PF17289.2 gi|435852080|ref|YP_007313666.1| - 0.43 10.6 3.1 1 9.4 3.0 1.6 1 1 0 1 1 1 0 Terminase RNaseH-like domain MICSWaP PF17018.5 gi|435852080|ref|YP_007313666.1| - 0.52 9.8 9.2 3.2 7.2 1.6 3.0 1 1 2 3 3 3 0 Spore wall protein YpjP PF14005.6 gi|435852080|ref|YP_007313666.1| - 0.84 9.7 4.0 3.2 7.8 2.8 1.8 1 1 1 2 2 2 0 YpjP-like protein YtxH PF12732.7 gi|435852080|ref|YP_007313666.1| - 1 9.9 5.6 8.8 7.0 5.6 2.4 1 1 0 1 1 1 0 YtxH-like protein MFS_1 PF07690.16 gi|435852081|ref|YP_007313667.1| - 1.7e-55 188.4 44.5 1.7e-55 188.4 44.5 2.2 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|435852081|ref|YP_007313667.1| - 3.9e-09 35.9 10.9 3.9e-09 35.9 10.9 2.6 3 0 0 3 3 3 1 Sugar (and other) transporter MFS_3 PF05977.13 gi|435852081|ref|YP_007313667.1| - 2.3e-07 29.6 14.4 4.6e-06 25.3 7.8 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.7 gi|435852081|ref|YP_007313667.1| - 2.6e-06 26.5 7.5 2.6e-06 26.5 7.5 2.7 2 1 0 2 2 2 2 MFS_1 like family PUCC PF03209.15 gi|435852081|ref|YP_007313667.1| - 0.0033 16.5 24.0 0.0034 16.4 6.4 2.3 2 0 0 2 2 2 2 PUCC protein Asp_protease PF09668.10 gi|435852081|ref|YP_007313667.1| - 0.15 11.8 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 Aspartyl protease NPCBM_assoc PF10633.9 gi|435852082|ref|YP_007313668.1| - 7.3e-06 26.2 0.0 0.017 15.3 0.0 2.7 2 0 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|435852082|ref|YP_007313668.1| - 0.0011 19.2 3.9 0.0032 17.7 0.3 3.1 2 1 2 4 4 4 1 CARDB PHTB1_C PF14728.6 gi|435852082|ref|YP_007313668.1| - 0.0051 16.0 0.0 0.0075 15.4 0.0 1.1 1 0 0 1 1 1 1 PTHB1 C-terminus ABC2_membrane_3 PF12698.7 gi|435852083|ref|YP_007313669.1| - 3.7e-40 138.1 22.3 4.4e-40 137.9 22.3 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|435852083|ref|YP_007313669.1| - 7.4e-39 133.3 19.3 3.8e-35 121.2 15.7 2.3 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|435852083|ref|YP_007313669.1| - 9.9e-21 74.3 14.0 1.5e-20 73.7 14.0 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|435852083|ref|YP_007313669.1| - 1.2e-06 28.6 8.9 1.2e-06 28.6 8.9 2.7 2 1 0 2 2 2 1 ABC-2 family transporter protein CcmB PF03379.13 gi|435852083|ref|YP_007313669.1| - 5.5e-05 22.8 7.6 8.2e-05 22.2 3.3 2.2 2 0 0 2 2 2 1 CcmB protein HlyD_3 PF13437.6 gi|435852083|ref|YP_007313669.1| - 0.091 13.5 0.0 0.18 12.5 0.0 1.4 1 0 0 1 1 1 0 HlyD family secretion protein Membralin PF09746.9 gi|435852083|ref|YP_007313669.1| - 1.8 7.5 4.4 3 6.8 4.4 1.3 1 0 0 1 1 1 0 Tumour-associated protein ABC2_membrane_5 PF13346.6 gi|435852083|ref|YP_007313669.1| - 2.4 7.7 23.6 0.91 9.0 16.0 3.0 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|435852084|ref|YP_007313670.1| - 5.9e-30 104.6 0.0 1.1e-29 103.7 0.0 1.4 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|435852084|ref|YP_007313670.1| - 6e-13 49.3 0.1 2.2e-07 31.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|435852084|ref|YP_007313670.1| - 8.1e-05 22.5 0.0 0.032 13.9 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|435852084|ref|YP_007313670.1| - 0.00064 19.4 0.4 0.0014 18.3 0.4 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|435852084|ref|YP_007313670.1| - 0.00089 19.8 0.2 0.0015 19.0 0.2 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|435852084|ref|YP_007313670.1| - 0.032 13.7 0.1 0.71 9.3 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|435852084|ref|YP_007313670.1| - 0.075 12.9 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase TetR_N PF00440.23 gi|435852085|ref|YP_007313671.1| - 8e-16 57.6 0.3 1.6e-15 56.6 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_7 PF14246.6 gi|435852085|ref|YP_007313671.1| - 0.0017 18.4 0.0 0.0027 17.7 0.0 1.4 1 0 0 1 1 1 1 AefR-like transcriptional repressor, C-terminal domain HTH_7 PF02796.15 gi|435852085|ref|YP_007313671.1| - 0.016 15.3 0.2 2.1 8.5 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|435852085|ref|YP_007313671.1| - 0.024 14.5 0.0 4.5 7.2 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain NACHT PF05729.12 gi|435852085|ref|YP_007313671.1| - 0.031 14.2 0.0 0.049 13.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain OTCace PF00185.24 gi|435852086|ref|YP_007313672.1| - 7.9e-61 204.7 0.0 1.1e-60 204.3 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|435852086|ref|YP_007313672.1| - 1e-51 174.9 0.4 1.6e-51 174.2 0.4 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NAD_binding_7 PF13241.6 gi|435852086|ref|YP_007313672.1| - 0.13 12.7 0.0 0.45 11.0 0.0 1.9 1 1 0 1 1 1 0 Putative NAD(P)-binding GARS_A PF01071.19 gi|435852087|ref|YP_007313673.1| - 2.5e-54 184.0 0.4 5e-54 183.0 0.1 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|435852087|ref|YP_007313673.1| - 6.9e-27 94.1 0.8 4.3e-26 91.5 0.3 2.2 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|435852087|ref|YP_007313673.1| - 5.4e-18 65.1 0.5 1.2e-16 60.8 0.2 3.1 4 0 0 4 4 4 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.6 gi|435852087|ref|YP_007313673.1| - 0.00016 21.3 0.1 0.0014 18.3 0.1 2.3 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|435852087|ref|YP_007313673.1| - 0.031 13.5 0.0 3.2 6.9 0.0 2.4 3 0 0 3 3 3 0 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|435852087|ref|YP_007313673.1| - 0.057 13.5 0.0 0.11 12.5 0.0 1.5 1 1 0 1 1 1 0 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|435852087|ref|YP_007313673.1| - 0.082 12.4 0.0 0.32 10.5 0.0 1.9 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Ribosomal_L17 PF01196.19 gi|435852087|ref|YP_007313673.1| - 0.1 13.5 0.1 12 6.8 0.1 2.4 2 0 0 2 2 2 0 Ribosomal protein L17 Pribosyltran PF00156.27 gi|435852088|ref|YP_007313674.1| - 2e-14 53.4 1.5 2.7e-14 53.0 1.5 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|435852088|ref|YP_007313674.1| - 0.037 13.5 0.0 0.056 12.9 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase CarS-like PF01864.17 gi|435852089|ref|YP_007313675.1| - 6.6e-49 166.2 3.1 7.5e-49 166.1 3.1 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|435852089|ref|YP_007313675.1| - 7.6e-08 32.4 3.9 7.6e-08 32.4 3.9 1.8 1 1 1 2 2 2 1 Cytidylyltransferase family CbtA PF09490.10 gi|435852089|ref|YP_007313675.1| - 1.4 8.6 4.7 0.48 10.1 0.3 2.1 2 1 0 2 2 2 0 Probable cobalt transporter subunit (CbtA) CcmF_C PF16327.5 gi|435852090|ref|YP_007313676.1| - 6.2e-20 71.7 4.2 9.7e-20 71.1 4.2 1.2 1 0 0 1 1 1 1 Cytochrome c-type biogenesis protein CcmF C-terminal ResB PF05140.14 gi|435852090|ref|YP_007313676.1| - 0.0027 16.5 0.8 0.24 10.1 0.1 2.2 1 1 0 2 2 2 2 ResB-like family ABC2_membrane_2 PF12679.7 gi|435852090|ref|YP_007313676.1| - 0.44 9.8 19.7 0.38 10.0 18.2 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF2070 PF09843.9 gi|435852090|ref|YP_007313676.1| - 0.46 8.7 10.5 0.66 8.2 10.5 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Cytochrom_C_asm PF01578.20 gi|435852091|ref|YP_007313677.1| - 8.7e-33 113.9 19.6 8.7e-33 113.9 19.6 1.8 2 0 0 2 2 2 1 Cytochrome C assembly protein DUF4896 PF16237.5 gi|435852091|ref|YP_007313677.1| - 3.3 7.6 8.4 0.35 10.7 0.4 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4896) Exonuc_VII_S PF02609.16 gi|435852092|ref|YP_007313678.1| - 2.2e-19 69.2 4.7 3.9e-19 68.4 4.7 1.4 1 0 0 1 1 1 1 Exonuclease VII small subunit DUF2524 PF10732.9 gi|435852092|ref|YP_007313678.1| - 0.1 12.9 0.2 0.34 11.3 0.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2524) Csm1_N PF18504.1 gi|435852092|ref|YP_007313678.1| - 0.11 12.9 1.4 4.3 7.7 0.1 2.1 1 1 1 2 2 2 0 Csm1 N-terminal domain bZIP_1 PF00170.21 gi|435852092|ref|YP_007313678.1| - 0.62 10.2 4.4 0.22 11.6 0.6 2.0 2 0 0 2 2 2 0 bZIP transcription factor Exonuc_VII_L PF02601.15 gi|435852093|ref|YP_007313679.1| - 9.1e-86 288.2 0.0 1.8e-76 257.7 0.0 2.1 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 gi|435852093|ref|YP_007313679.1| - 1.7e-30 105.1 0.1 3.6e-30 104.0 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|435852093|ref|YP_007313679.1| - 2.7e-06 27.3 0.0 7.2e-06 25.9 0.0 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RecJ_OB PF17768.1 gi|435852093|ref|YP_007313679.1| - 0.0009 19.5 0.0 0.0018 18.5 0.0 1.5 1 0 0 1 1 1 1 RecJ OB domain NYD-SP28 PF14772.6 gi|435852093|ref|YP_007313679.1| - 0.0028 17.7 0.1 0.0064 16.5 0.1 1.5 1 0 0 1 1 1 1 Sperm tail DUF4795 PF16043.5 gi|435852093|ref|YP_007313679.1| - 0.0089 15.7 0.9 0.017 14.7 0.9 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4795) DUF86 PF01934.17 gi|435852093|ref|YP_007313679.1| - 0.047 13.6 0.1 0.096 12.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF86 GDP_Man_Dehyd PF16363.5 gi|435852094|ref|YP_007313680.1| - 6.2e-132 440.0 0.0 7.4e-132 439.8 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|435852094|ref|YP_007313680.1| - 7.9e-69 231.8 0.1 9.6e-69 231.5 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|435852094|ref|YP_007313680.1| - 7.8e-09 35.0 0.0 1.3e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|435852094|ref|YP_007313680.1| - 2.1e-05 24.2 0.0 3.4e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.6 gi|435852094|ref|YP_007313680.1| - 0.00023 21.1 0.0 0.0004 20.3 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|435852094|ref|YP_007313680.1| - 0.072 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase DUF4012 PF13196.6 gi|435852094|ref|YP_007313680.1| - 0.098 13.1 0.0 0.24 11.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4012) Epimerase_2 PF02350.19 gi|435852095|ref|YP_007313681.1| - 4.7e-44 150.7 0.0 6.2e-44 150.3 0.0 1.1 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase V-ATPase_C PF03223.15 gi|435852095|ref|YP_007313681.1| - 0.18 11.2 0.5 0.36 10.2 0.5 1.4 1 0 0 1 1 1 0 V-ATPase subunit C Polysacc_synt_3 PF13440.6 gi|435852096|ref|YP_007313682.1| - 4.2e-27 95.1 18.4 8e-27 94.2 18.4 1.4 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|435852096|ref|YP_007313682.1| - 3.2e-26 92.3 26.0 3.2e-26 92.3 26.0 2.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|435852096|ref|YP_007313682.1| - 5e-14 52.6 6.4 5e-14 52.6 6.4 4.4 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|435852096|ref|YP_007313682.1| - 4.8e-12 45.8 31.0 2.3e-08 33.9 14.2 2.7 2 1 0 2 2 2 2 MatE MurJ PF03023.14 gi|435852096|ref|YP_007313682.1| - 4.8e-11 41.9 35.9 1.1e-10 40.8 35.9 1.6 1 1 0 1 1 1 1 Lipid II flippase MurJ Glycos_transf_2 PF00535.26 gi|435852097|ref|YP_007313683.1| - 6e-23 81.5 0.1 8.8e-23 81.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|435852097|ref|YP_007313683.1| - 2.7e-08 34.0 0.0 5.1e-08 33.1 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|435852097|ref|YP_007313683.1| - 0.00081 18.9 0.0 0.0017 17.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 T2SSE PF00437.20 gi|435852098|ref|YP_007313684.1| - 4.2e-35 121.1 0.0 7.5e-35 120.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_7 PF12775.7 gi|435852098|ref|YP_007313684.1| - 0.0083 15.7 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region cobW PF02492.19 gi|435852098|ref|YP_007313684.1| - 0.012 15.2 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain CUB PF00431.20 gi|435852098|ref|YP_007313684.1| - 0.044 14.1 0.1 0.14 12.5 0.1 1.9 1 0 0 1 1 1 0 CUB domain Zeta_toxin PF06414.12 gi|435852098|ref|YP_007313684.1| - 0.057 12.7 0.0 0.12 11.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin ATPase PF06745.13 gi|435852098|ref|YP_007313684.1| - 0.09 12.1 0.0 0.27 10.5 0.0 1.8 1 0 0 1 1 1 0 KaiC AAA_29 PF13555.6 gi|435852098|ref|YP_007313684.1| - 0.16 11.7 0.1 0.35 10.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|435852098|ref|YP_007313684.1| - 0.17 12.4 0.1 0.64 10.5 0.0 2.0 2 0 0 2 2 2 0 ABC transporter Fer4 PF00037.27 gi|435852100|ref|YP_007313686.1| - 8.7e-10 38.0 13.8 4.4e-05 23.1 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|435852100|ref|YP_007313686.1| - 8.4e-08 32.0 15.5 2.8e-05 24.0 5.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|435852100|ref|YP_007313686.1| - 1.3e-06 29.3 13.1 7.1e-05 23.7 1.6 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|435852100|ref|YP_007313686.1| - 4.9e-06 26.6 15.0 8.4e-06 25.9 15.0 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435852100|ref|YP_007313686.1| - 1e-05 25.5 18.2 0.00026 21.1 18.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435852100|ref|YP_007313686.1| - 2e-05 24.6 11.7 2.6e-05 24.3 11.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435852100|ref|YP_007313686.1| - 2.4e-05 24.8 15.1 7.6e-05 23.2 15.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435852100|ref|YP_007313686.1| - 4.9e-05 23.2 17.1 0.0022 18.0 2.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|435852100|ref|YP_007313686.1| - 0.00063 20.1 15.8 0.089 13.3 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|435852100|ref|YP_007313686.1| - 0.0032 18.3 21.3 0.16 13.0 4.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|435852100|ref|YP_007313686.1| - 0.0052 17.2 17.1 0.017 15.6 3.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435852100|ref|YP_007313686.1| - 0.062 13.8 17.8 0.091 13.3 3.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|435852100|ref|YP_007313686.1| - 0.091 13.5 11.6 0.18 12.5 4.2 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|435852100|ref|YP_007313686.1| - 0.49 11.0 15.2 1.9 9.1 1.9 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|435852100|ref|YP_007313686.1| - 1.5 9.1 13.0 59 3.9 13.1 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Radical_SAM PF04055.21 gi|435852101|ref|YP_007313687.1| - 1.8e-08 34.9 0.0 5.1e-08 33.5 0.0 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|435852101|ref|YP_007313687.1| - 4.6e-06 26.7 0.0 1.1e-05 25.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|435852101|ref|YP_007313687.1| - 0.00056 20.2 0.1 0.0011 19.3 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2551 PF10826.8 gi|435852102|ref|YP_007313688.1| - 4e-31 107.1 0.5 4.8e-31 106.8 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Prenyltransf PF01255.19 gi|435852103|ref|YP_007313689.1| - 6.5e-70 235.2 0.0 8.2e-70 234.8 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase T6_Ig_like PF18002.1 gi|435852103|ref|YP_007313689.1| - 0.0024 17.8 0.2 0.021 14.7 0.1 2.1 2 0 0 2 2 2 1 T6 antigen Ig like domain RNA_pol_A_bac PF01000.26 gi|435852104|ref|YP_007313690.1| - 1e-27 96.7 0.0 2.5e-27 95.4 0.0 1.6 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|435852104|ref|YP_007313690.1| - 3.3e-14 52.1 0.0 4.4e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.27 gi|435852104|ref|YP_007313690.1| - 1.1e-06 28.1 13.1 4.7e-05 23.0 3.9 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435852104|ref|YP_007313690.1| - 3.4e-05 24.3 9.0 3.4e-05 24.3 9.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435852104|ref|YP_007313690.1| - 4.7e-05 23.4 9.0 4.7e-05 23.4 9.0 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435852104|ref|YP_007313690.1| - 6.8e-05 22.9 9.6 6.8e-05 22.9 9.6 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435852104|ref|YP_007313690.1| - 8.3e-05 23.4 9.4 0.013 16.4 0.7 3.2 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|435852104|ref|YP_007313690.1| - 0.0011 19.0 16.1 0.031 14.4 6.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|435852104|ref|YP_007313690.1| - 0.0011 19.4 14.3 0.23 12.0 6.5 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435852104|ref|YP_007313690.1| - 0.051 13.7 2.8 0.051 13.7 2.8 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|435852104|ref|YP_007313690.1| - 0.059 14.3 3.9 0.059 14.3 3.9 3.3 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|435852104|ref|YP_007313690.1| - 0.15 12.6 17.7 0.35 11.4 2.2 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain OapA PF04225.12 gi|435852104|ref|YP_007313690.1| - 0.17 12.0 0.0 0.75 9.9 0.0 2.0 2 0 0 2 2 2 0 Opacity-associated protein A LysM-like domain Fer4_21 PF14697.6 gi|435852104|ref|YP_007313690.1| - 2.2 8.5 21.5 0.069 13.3 12.9 2.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain Ribosomal_S11 PF00411.19 gi|435852105|ref|YP_007313691.1| - 5.9e-47 158.6 3.1 8.4e-47 158.1 3.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.10 gi|435852105|ref|YP_007313691.1| - 0.004 16.9 0.2 0.005 16.6 0.2 1.2 1 0 0 1 1 1 1 Pilus biogenesis CpaD protein (pilus_cpaD) S4 PF01479.25 gi|435852106|ref|YP_007313692.1| - 3.8e-12 45.7 0.0 7.2e-12 44.8 0.0 1.5 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|435852106|ref|YP_007313692.1| - 6.8e-06 26.9 1.3 8.9e-06 26.5 0.6 1.5 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain Thioredoxin_13 PF18401.1 gi|435852106|ref|YP_007313692.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like domain SURF1 PF02104.15 gi|435852106|ref|YP_007313692.1| - 0.13 12.5 0.4 0.67 10.2 0.4 1.8 1 1 0 1 1 1 0 SURF1 family Ribosomal_S13 PF00416.22 gi|435852107|ref|YP_007313693.1| - 4.8e-41 140.1 0.3 5.6e-41 139.9 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_5 PF14520.6 gi|435852107|ref|YP_007313693.1| - 0.014 16.0 0.1 0.033 14.8 0.1 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain NUDIX PF00293.28 gi|435852108|ref|YP_007313694.1| - 3.1e-19 69.3 0.0 4.7e-19 68.7 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain zf-NADH-PPase PF09297.11 gi|435852108|ref|YP_007313694.1| - 9.4e-06 25.2 0.1 1.8e-05 24.3 0.1 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|435852108|ref|YP_007313694.1| - 6.3e-05 22.8 0.0 0.00012 21.9 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain NUDIX-like PF09296.11 gi|435852108|ref|YP_007313694.1| - 0.0032 18.1 0.0 0.0052 17.4 0.0 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase-like rudimentary NUDIX domain DUF5402 PF17393.2 gi|435852108|ref|YP_007313694.1| - 0.069 13.1 0.1 0.16 11.9 0.1 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5402) zf-FPG_IleRS PF06827.14 gi|435852108|ref|YP_007313694.1| - 0.97 9.4 5.8 4.6 7.2 0.8 2.8 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS PIN_12 PF16289.5 gi|435852109|ref|YP_007313695.1| - 1e-29 104.3 13.8 1e-29 104.3 13.8 1.9 2 0 0 2 2 2 1 PIN domain PIN_8 PF18476.1 gi|435852109|ref|YP_007313695.1| - 0.0014 18.6 4.3 0.31 10.9 0.3 3.1 3 0 0 3 3 3 3 PIN like domain Stomoxyn PF11585.8 gi|435852109|ref|YP_007313695.1| - 0.39 10.8 0.9 2.6 8.1 1.3 2.1 2 0 0 2 2 2 0 Insect antimicrobial peptide, stomoxyn Fic_N PF13784.6 gi|435852110|ref|YP_007313696.1| - 2.3e-28 98.0 0.0 4.2e-28 97.2 0.0 1.4 1 0 0 1 1 1 1 Fic/DOC family N-terminal Fic PF02661.18 gi|435852110|ref|YP_007313696.1| - 3.5e-21 75.9 0.0 8e-21 74.8 0.0 1.6 1 0 0 1 1 1 1 Fic/DOC family HTH_13 PF11972.8 gi|435852110|ref|YP_007313696.1| - 1.1e-05 25.4 0.0 3.2e-05 23.9 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|435852110|ref|YP_007313696.1| - 0.00059 19.3 0.2 0.0016 18.0 0.2 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|435852110|ref|YP_007313696.1| - 0.0035 17.2 0.5 0.016 15.1 0.2 2.2 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.7 gi|435852110|ref|YP_007313696.1| - 0.13 12.2 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|435852110|ref|YP_007313696.1| - 0.14 12.1 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 MarR family Dimerisation2 PF16864.5 gi|435852110|ref|YP_007313696.1| - 0.16 12.0 0.0 4 7.5 0.0 2.3 2 0 0 2 2 2 0 Dimerisation domain TruB_N PF01509.18 gi|435852111|ref|YP_007313697.1| - 1.6e-24 87.0 0.2 1e-20 74.6 0.2 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|435852111|ref|YP_007313697.1| - 1.1e-23 83.1 0.1 2e-23 82.3 0.1 1.4 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain DKCLD PF08068.12 gi|435852111|ref|YP_007313697.1| - 7e-16 58.1 0.2 1.6e-15 56.9 0.2 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.20 gi|435852111|ref|YP_007313697.1| - 1e-14 54.2 0.2 2.1e-14 53.2 0.2 1.5 1 0 0 1 1 1 1 PUA domain Cytidylate_kin2 PF13189.6 gi|435852112|ref|YP_007313698.1| - 3.1e-21 76.3 1.5 8.8e-20 71.6 1.5 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|435852112|ref|YP_007313698.1| - 6.5e-13 49.4 0.1 1.3e-12 48.4 0.0 1.5 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|435852112|ref|YP_007313698.1| - 3.8e-12 46.8 0.1 6e-12 46.2 0.1 1.4 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|435852112|ref|YP_007313698.1| - 6.5e-11 42.4 3.0 1.2e-05 25.1 0.4 2.1 1 1 0 2 2 2 2 Cytidylate kinase AAA_33 PF13671.6 gi|435852112|ref|YP_007313698.1| - 5e-06 26.7 0.5 0.0011 19.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|435852112|ref|YP_007313698.1| - 1.8e-05 25.1 0.5 3.7e-05 24.0 0.5 1.7 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|435852112|ref|YP_007313698.1| - 2.6e-05 24.4 0.8 6.1e-05 23.2 0.8 1.6 1 1 0 1 1 1 1 Shikimate kinase ADK PF00406.22 gi|435852112|ref|YP_007313698.1| - 0.00018 21.7 0.1 0.00028 21.0 0.1 1.6 1 1 0 1 1 1 1 Adenylate kinase CoaE PF01121.20 gi|435852112|ref|YP_007313698.1| - 0.00022 21.0 1.2 0.16 11.6 0.0 2.1 1 1 1 2 2 2 2 Dephospho-CoA kinase dNK PF01712.19 gi|435852112|ref|YP_007313698.1| - 0.045 13.6 0.6 1.4 8.7 0.1 2.1 2 0 0 2 2 2 0 Deoxynucleoside kinase Sulfotransfer_3 PF13469.6 gi|435852112|ref|YP_007313698.1| - 0.08 13.3 0.1 0.12 12.7 0.1 1.4 1 1 0 1 1 1 0 Sulfotransferase family PRK PF00485.18 gi|435852112|ref|YP_007313698.1| - 0.14 11.9 0.8 0.6 9.8 0.2 2.1 1 1 2 3 3 3 0 Phosphoribulokinase / Uridine kinase family EMC3_TMCO1 PF01956.16 gi|435852113|ref|YP_007313699.1| - 1.7e-46 158.1 6.1 2.2e-46 157.7 6.1 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like HPIH PF13323.6 gi|435852113|ref|YP_007313699.1| - 0.023 14.6 0.1 0.067 13.0 0.0 1.7 2 0 0 2 2 2 0 N-terminal domain with HPIH motif 60KD_IMP PF02096.20 gi|435852113|ref|YP_007313699.1| - 0.027 14.4 6.0 0.67 9.8 5.9 2.3 1 1 0 1 1 1 0 60Kd inner membrane protein DUF4199 PF13858.6 gi|435852113|ref|YP_007313699.1| - 5.8 7.3 15.3 93 3.4 15.3 2.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) ADK PF00406.22 gi|435852114|ref|YP_007313700.1| - 5.1e-59 198.7 0.0 6.2e-59 198.4 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|435852114|ref|YP_007313700.1| - 1.6e-29 103.1 0.1 3.8e-29 101.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain ADK_lid PF05191.14 gi|435852114|ref|YP_007313700.1| - 5.5e-14 51.9 1.5 1.2e-13 50.8 1.5 1.6 1 0 0 1 1 1 1 Adenylate kinase, active site lid Hydin_ADK PF17213.3 gi|435852114|ref|YP_007313700.1| - 2.6e-09 37.7 0.1 0.00025 21.4 0.0 2.2 1 1 1 2 2 2 2 Hydin Adenylate kinase-like domain AAA_18 PF13238.6 gi|435852114|ref|YP_007313700.1| - 2.3e-06 28.2 0.0 4.8e-06 27.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|435852114|ref|YP_007313700.1| - 0.00026 21.3 0.0 0.003 17.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain Cytidylate_kin PF02224.18 gi|435852114|ref|YP_007313700.1| - 0.00066 19.5 0.0 0.00098 18.9 0.0 1.3 1 0 0 1 1 1 1 Cytidylate kinase AAA PF00004.29 gi|435852114|ref|YP_007313700.1| - 0.0022 18.4 0.2 0.0038 17.6 0.1 1.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|435852114|ref|YP_007313700.1| - 0.0032 17.6 0.0 0.0056 16.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|435852114|ref|YP_007313700.1| - 0.0095 15.7 0.0 0.079 12.7 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|435852114|ref|YP_007313700.1| - 0.014 15.7 0.0 0.14 12.4 0.0 2.2 3 0 0 3 3 2 0 AAA domain zf-IS66 PF13005.7 gi|435852114|ref|YP_007313700.1| - 0.11 13.0 0.1 0.23 11.9 0.1 1.6 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Thymidylate_kin PF02223.17 gi|435852114|ref|YP_007313700.1| - 0.13 12.0 0.1 0.43 10.2 0.0 1.8 2 1 0 3 3 3 0 Thymidylate kinase AAA_5 PF07728.14 gi|435852114|ref|YP_007313700.1| - 0.18 11.8 0.0 0.58 10.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|435852114|ref|YP_007313700.1| - 0.18 11.1 0.0 0.37 10.2 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SecY PF00344.20 gi|435852115|ref|YP_007313701.1| - 1.5e-64 218.2 24.9 1.8e-64 217.9 24.9 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|435852115|ref|YP_007313701.1| - 7.7e-11 41.7 3.2 8.1e-11 41.6 0.8 2.3 2 0 0 2 2 2 1 Plug domain of Sec61p Ribosomal_L27A PF00828.19 gi|435852116|ref|YP_007313702.1| - 1.3e-23 84.1 0.2 1.6e-23 83.8 0.2 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|435852116|ref|YP_007313702.1| - 0.0048 16.3 0.1 0.0072 15.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L30 PF00327.20 gi|435852117|ref|YP_007313703.1| - 1.1e-12 47.6 0.2 1.7e-12 47.0 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e TPR_14 PF13428.6 gi|435852117|ref|YP_007313703.1| - 0.096 13.6 0.0 0.29 12.0 0.0 1.8 2 0 0 2 2 2 0 Tetratricopeptide repeat Ribosomal_S5 PF00333.20 gi|435852118|ref|YP_007313704.1| - 2.1e-25 88.4 0.7 1.2e-24 86.1 0.8 2.1 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|435852118|ref|YP_007313704.1| - 2e-23 81.6 0.6 4e-23 80.6 0.6 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain CsgG PF03783.14 gi|435852118|ref|YP_007313704.1| - 0.03 13.6 0.0 0.057 12.7 0.0 1.4 1 0 0 1 1 1 0 Curli production assembly/transport component CsgG Ribosomal_L5e PF17144.4 gi|435852119|ref|YP_007313705.1| - 1e-30 106.9 0.3 1.7e-20 73.6 0.2 2.3 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|435852119|ref|YP_007313705.1| - 1.4e-06 28.7 0.0 1.8e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|435852120|ref|YP_007313706.1| - 1.9e-55 186.9 8.4 2.1e-55 186.7 8.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e CdhD PF03599.16 gi|435852120|ref|YP_007313706.1| - 0.13 11.0 0.0 0.17 10.6 0.0 1.2 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit Ribosomal_L32e PF01655.18 gi|435852121|ref|YP_007313707.1| - 4.7e-31 107.4 0.1 6.1e-31 107.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.23 gi|435852122|ref|YP_007313708.1| - 2.5e-28 98.5 2.2 3.5e-17 62.9 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.19 gi|435852123|ref|YP_007313709.1| - 7.2e-28 97.1 0.0 8.7e-28 96.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|435852124|ref|YP_007313710.1| - 6.3e-14 51.5 2.3 6.9e-14 51.4 2.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-P11 PF03854.14 gi|435852124|ref|YP_007313710.1| - 0.00033 20.2 2.0 0.00041 20.0 2.0 1.1 1 0 0 1 1 1 1 P-11 zinc finger DUF4428 PF14471.6 gi|435852124|ref|YP_007313710.1| - 0.00081 19.3 0.3 0.00092 19.1 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Ribosomal_L37ae PF01780.19 gi|435852124|ref|YP_007313710.1| - 0.013 15.6 1.2 0.014 15.4 1.2 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family DUF1451 PF07295.11 gi|435852124|ref|YP_007313710.1| - 0.024 14.7 0.8 0.026 14.6 0.8 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain Ribosomal_L5_C PF00673.21 gi|435852125|ref|YP_007313711.1| - 1.9e-26 92.1 0.0 2.8e-26 91.5 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|435852125|ref|YP_007313711.1| - 2.2e-18 66.3 0.3 4.1e-18 65.4 0.3 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.20 gi|435852126|ref|YP_007313712.1| - 8.7e-23 80.0 0.1 2.2e-22 78.8 0.1 1.7 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|435852126|ref|YP_007313712.1| - 4.2e-11 42.8 1.6 8.5e-11 41.8 1.6 1.6 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|435852126|ref|YP_007313712.1| - 1.3e-05 24.8 0.9 0.00015 21.4 0.1 2.5 2 0 0 2 2 2 1 S4 domain KOW PF00467.29 gi|435852126|ref|YP_007313712.1| - 4.8e-05 23.2 0.1 0.00015 21.6 0.1 1.9 1 0 0 1 1 1 1 KOW motif S4_2 PF13275.6 gi|435852126|ref|YP_007313712.1| - 0.0045 16.8 0.1 0.05 13.4 0.0 2.3 2 0 0 2 2 2 1 S4 domain DUF3994 PF13159.6 gi|435852126|ref|YP_007313712.1| - 0.019 15.5 0.1 0.031 14.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3994) Ribosomal_L26 PF16906.5 gi|435852127|ref|YP_007313713.1| - 8e-32 109.6 0.3 9.8e-32 109.3 0.3 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|435852127|ref|YP_007313713.1| - 2e-05 24.4 4.6 4e-05 23.4 4.6 1.6 1 0 0 1 1 1 1 KOW motif Ribosomal_L14 PF00238.19 gi|435852128|ref|YP_007313714.1| - 2.9e-36 124.2 0.5 3.3e-36 124.1 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Tox-REase-9 PF15650.6 gi|435852128|ref|YP_007313714.1| - 0.021 15.1 0.1 2.2 8.6 0.0 2.2 2 0 0 2 2 2 0 Restriction endonuclease fold toxin 9 Ribosomal_S17 PF00366.20 gi|435852129|ref|YP_007313715.1| - 4.9e-28 97.0 2.9 5.9e-28 96.8 2.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|435852129|ref|YP_007313715.1| - 0.0035 17.7 0.4 0.012 16.0 0.0 2.0 2 0 0 2 2 2 1 Ribosomal_S17 N-terminal UPF0086 PF01868.16 gi|435852130|ref|YP_007313716.1| - 2.9e-23 81.6 0.1 3.3e-23 81.4 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Myosin_N PF02736.19 gi|435852130|ref|YP_007313716.1| - 0.0061 16.4 0.6 0.0095 15.7 0.6 1.3 1 0 0 1 1 1 1 Myosin N-terminal SH3-like domain Btz PF09405.10 gi|435852130|ref|YP_007313716.1| - 0.12 12.6 0.0 0.14 12.5 0.0 1.1 1 0 0 1 1 1 0 CASC3/Barentsz eIF4AIII binding Ribosomal_L29 PF00831.23 gi|435852131|ref|YP_007313717.1| - 6.6e-16 58.0 0.0 8.2e-16 57.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Ribosomal_S3_C PF00189.20 gi|435852132|ref|YP_007313718.1| - 1.7e-22 79.7 1.2 3.7e-22 78.6 0.6 1.9 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|435852132|ref|YP_007313718.1| - 1.4e-14 53.7 0.0 3.3e-14 52.5 0.0 1.7 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|435852132|ref|YP_007313718.1| - 0.068 13.0 0.3 0.5 10.2 0.1 2.4 3 0 0 3 3 3 0 KH domain KH_4 PF13083.6 gi|435852132|ref|YP_007313718.1| - 0.14 12.0 0.0 0.5 10.3 0.0 2.0 1 0 0 1 1 1 0 KH domain Ribosomal_L22 PF00237.19 gi|435852133|ref|YP_007313719.1| - 3.2e-27 94.8 0.0 3.8e-27 94.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|435852134|ref|YP_007313720.1| - 1.1e-24 86.1 0.1 1.7e-24 85.5 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Citrate_synt PF00285.21 gi|435852134|ref|YP_007313720.1| - 0.099 11.7 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain STAT1_TAZ2bind PF12162.8 gi|435852134|ref|YP_007313720.1| - 0.16 11.6 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 STAT1 TAZ2 binding domain Ribosomal_L2_C PF03947.18 gi|435852135|ref|YP_007313721.1| - 8.1e-49 165.0 1.5 1.8e-48 163.9 1.5 1.5 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|435852135|ref|YP_007313721.1| - 1.3e-14 53.9 0.0 4e-14 52.3 0.0 1.9 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|435852136|ref|YP_007313722.1| - 5.8e-15 55.4 1.4 3.4e-14 53.0 1.4 1.8 1 1 0 1 1 1 1 Ribosomal protein L23 Ribosomal_L4 PF00573.22 gi|435852137|ref|YP_007313723.1| - 1.5e-47 161.8 0.8 1.7e-47 161.6 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 gi|435852138|ref|YP_007313724.1| - 4.3e-85 285.9 1.2 6.8e-85 285.3 1.2 1.3 1 1 0 1 1 1 1 Ribosomal protein L3 DUF4431 PF14485.6 gi|435852138|ref|YP_007313724.1| - 0.17 11.7 0.0 0.35 10.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4431) POR PF01558.18 gi|435852139|ref|YP_007313725.1| - 1.7e-37 129.2 0.1 2e-37 129.0 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|435852140|ref|YP_007313726.1| - 9.4e-25 87.2 0.3 1.8e-24 86.3 0.3 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|435852140|ref|YP_007313726.1| - 1.4e-10 41.3 0.2 3.4e-10 40.1 0.2 1.6 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|435852140|ref|YP_007313726.1| - 9.9e-09 34.7 11.1 9.2e-05 22.1 3.1 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435852140|ref|YP_007313726.1| - 5.5e-06 26.5 11.4 1.4e-05 25.2 11.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435852140|ref|YP_007313726.1| - 9.4e-06 25.4 15.3 0.0004 20.3 2.4 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|435852140|ref|YP_007313726.1| - 1e-05 25.7 14.4 0.004 17.5 3.5 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435852140|ref|YP_007313726.1| - 1.5e-05 25.0 11.0 3.4e-05 23.9 11.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435852140|ref|YP_007313726.1| - 0.0001 22.2 16.3 0.015 15.4 1.2 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain TPP_enzyme_N PF02776.18 gi|435852140|ref|YP_007313726.1| - 0.00056 19.6 0.1 0.0013 18.3 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_21 PF14697.6 gi|435852140|ref|YP_007313726.1| - 0.00059 19.9 10.8 0.0058 16.7 11.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435852140|ref|YP_007313726.1| - 0.0019 18.7 13.5 0.057 14.0 13.5 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|435852140|ref|YP_007313726.1| - 0.37 11.6 10.7 0.92 10.3 0.6 3.2 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|435852140|ref|YP_007313726.1| - 0.83 10.6 12.7 0.97 10.4 2.7 2.7 1 1 3 4 4 4 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|435852140|ref|YP_007313726.1| - 4.2 8.0 14.3 1.6 9.4 2.3 2.9 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|435852140|ref|YP_007313726.1| - 5.6 8.1 14.2 4.5 8.4 5.4 3.0 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|435852140|ref|YP_007313726.1| - 6.4 7.4 13.4 12 6.5 2.8 2.6 1 1 3 4 4 4 0 4Fe-4S dicluster domain Aldedh PF00171.22 gi|435852141|ref|YP_007313727.1| - 2.5e-23 82.3 1.3 9.1e-18 64.0 0.2 2.2 2 0 0 2 2 2 2 Aldehyde dehydrogenase family AA_kinase PF00696.28 gi|435852142|ref|YP_007313728.1| - 5.3e-38 131.0 0.2 8.7e-38 130.3 0.2 1.3 1 0 0 1 1 1 1 Amino acid kinase family PUA PF01472.20 gi|435852142|ref|YP_007313728.1| - 8.2e-21 73.8 0.1 1.5e-20 72.9 0.1 1.5 1 0 0 1 1 1 1 PUA domain Pyrophosphatase PF00719.19 gi|435852142|ref|YP_007313728.1| - 0.11 12.2 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Inorganic pyrophosphatase tRNA_NucTransf2 PF09249.11 gi|435852143|ref|YP_007313729.1| - 1.6e-44 150.7 0.0 3e-44 149.9 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|435852143|ref|YP_007313729.1| - 8.6e-12 45.2 0.0 1.8e-11 44.1 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|435852143|ref|YP_007313729.1| - 6.2e-06 26.5 0.0 1.1e-05 25.7 0.0 1.3 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain HbrB PF08539.11 gi|435852145|ref|YP_007313731.1| - 0.0033 17.4 0.0 0.0047 16.9 0.0 1.3 1 0 0 1 1 1 1 HbrB-like OGG_N PF07934.12 gi|435852146|ref|YP_007313732.1| - 1e-17 64.3 0.2 2.4e-16 59.9 0.2 2.3 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.25 gi|435852146|ref|YP_007313732.1| - 1.5e-05 25.4 0.0 2.1e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|435852146|ref|YP_007313732.1| - 5.3e-05 22.9 0.0 0.00023 20.9 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|435852146|ref|YP_007313732.1| - 0.18 12.4 0.1 0.39 11.4 0.1 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain ADP_PFK_GK PF04587.15 gi|435852147|ref|YP_007313733.1| - 3.1e-102 342.3 0.0 3.5e-102 342.2 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region PfkB PF00294.24 gi|435852147|ref|YP_007313733.1| - 0.0025 17.2 0.0 1.2 8.3 0.0 2.3 2 0 0 2 2 2 2 pfkB family carbohydrate kinase ADP_PFK_GK PF04587.15 gi|435852148|ref|YP_007313734.1| - 2.7e-116 388.6 0.0 3.1e-116 388.4 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region ArgJ PF01960.18 gi|435852149|ref|YP_007313735.1| - 1.4e-136 455.1 5.9 1.7e-136 454.9 5.9 1.0 1 0 0 1 1 1 1 ArgJ family CBS PF00571.28 gi|435852150|ref|YP_007313736.1| - 3.1e-34 117.2 4.8 2.1e-18 66.5 0.4 2.2 2 0 0 2 2 2 2 CBS domain PBSX_XtrA PF17356.2 gi|435852150|ref|YP_007313736.1| - 0.073 13.0 0.2 0.21 11.5 0.0 1.8 2 0 0 2 2 2 0 Phage-like element PBSX protein XtrA DUF3659 PF12396.8 gi|435852150|ref|YP_007313736.1| - 0.1 12.5 1.6 0.15 12.0 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) Semialdhyde_dh PF01118.24 gi|435852151|ref|YP_007313737.1| - 1.8e-34 118.7 0.0 2.8e-34 118.1 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|435852151|ref|YP_007313737.1| - 9e-26 91.1 0.0 1.6e-25 90.3 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.22 gi|435852151|ref|YP_007313737.1| - 0.00035 21.4 0.0 0.00061 20.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|435852151|ref|YP_007313737.1| - 0.003 18.1 0.0 0.0058 17.2 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.17 gi|435852151|ref|YP_007313737.1| - 0.0043 16.1 0.1 0.01 14.9 0.1 1.5 1 0 0 1 1 1 1 Prephenate dehydrogenase DapB_N PF01113.20 gi|435852151|ref|YP_007313737.1| - 0.062 13.4 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.6 gi|435852151|ref|YP_007313737.1| - 0.12 12.3 0.0 0.31 10.9 0.0 1.7 1 0 0 1 1 1 0 NAD(P)H-binding HATPase_c_4 PF13749.6 gi|435852152|ref|YP_007313738.1| - 4.7e-16 58.7 0.1 1e-15 57.6 0.1 1.6 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal AlbA_2 PF04326.14 gi|435852152|ref|YP_007313738.1| - 1.2e-12 48.2 0.0 3e-12 47.0 0.0 1.7 1 0 0 1 1 1 1 Putative DNA-binding domain HATPase_c_2 PF13581.6 gi|435852152|ref|YP_007313738.1| - 0.13 12.2 0.1 0.27 11.2 0.1 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Disaggr_repeat PF06848.11 gi|435852153|ref|YP_007313739.1| - 1.6e-282 927.1 32.4 1.8e-95 317.7 5.2 3.4 3 0 0 3 3 3 3 Disaggregatase related repeat Disaggr_assoc PF08480.10 gi|435852153|ref|YP_007313739.1| - 1.5e-25 90.2 19.7 2.6e-25 89.4 17.7 2.4 2 0 0 2 2 2 1 Disaggregatase related PKD PF00801.20 gi|435852153|ref|YP_007313739.1| - 1.1e-18 66.8 27.8 1.8e-09 37.3 4.6 5.4 5 0 0 5 5 5 2 PKD domain Beta_helix PF13229.6 gi|435852153|ref|YP_007313739.1| - 1.8e-13 50.6 52.2 6e-10 39.2 20.1 3.3 2 1 1 3 3 3 2 Right handed beta helix region TGFb_propeptide PF00688.18 gi|435852153|ref|YP_007313739.1| - 6.8e-10 39.1 0.0 5 6.8 0.0 6.1 6 0 0 6 6 6 3 TGF-beta propeptide ig PF00047.25 gi|435852153|ref|YP_007313739.1| - 0.0058 16.8 3.9 2.3 8.4 0.2 2.9 2 0 0 2 2 2 2 Immunoglobulin domain DDE_Tnp_1 PF01609.21 gi|435852154|ref|YP_007313740.1| - 1.2e-10 41.4 0.9 2.4e-10 40.4 0.9 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|435852154|ref|YP_007313740.1| - 0.0006 19.8 0.0 0.0017 18.3 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DUF92 PF01940.16 gi|435852155|ref|YP_007313741.1| - 5.4e-57 192.9 11.3 5.4e-57 192.9 11.3 3.1 3 1 0 3 3 3 1 Integral membrane protein DUF92 DUF2951 PF11166.8 gi|435852155|ref|YP_007313741.1| - 0.01 16.0 0.1 0.1 12.8 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2951) Cupin_2 PF07883.11 gi|435852156|ref|YP_007313742.1| - 3.3e-14 52.3 0.1 5.6e-14 51.6 0.1 1.4 1 0 0 1 1 1 1 Cupin domain HTH_19 PF12844.7 gi|435852156|ref|YP_007313742.1| - 6.5e-11 42.1 0.1 1e-10 41.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|435852156|ref|YP_007313742.1| - 9.5e-09 35.2 0.1 1.5e-08 34.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|435852156|ref|YP_007313742.1| - 4.2e-05 23.8 0.0 5.7e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MannoseP_isomer PF01050.18 gi|435852156|ref|YP_007313742.1| - 0.0029 17.5 0.0 0.0059 16.5 0.0 1.6 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase EutQ PF06249.12 gi|435852156|ref|YP_007313742.1| - 0.0074 16.1 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ AraC_binding PF02311.19 gi|435852156|ref|YP_007313742.1| - 0.026 14.4 0.0 0.039 13.8 0.0 1.3 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|435852156|ref|YP_007313742.1| - 0.033 13.9 0.0 0.06 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) HTH_26 PF13443.6 gi|435852156|ref|YP_007313742.1| - 0.069 13.6 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Nbl1_Borealin_N PF10444.9 gi|435852156|ref|YP_007313742.1| - 0.18 11.4 0.7 0.37 10.4 0.7 1.4 1 0 0 1 1 1 0 Nbl1 / Borealin N terminal AMP-binding PF00501.28 gi|435852157|ref|YP_007313743.1| - 7.7e-77 258.7 0.0 9.6e-77 258.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|435852157|ref|YP_007313743.1| - 2.3e-23 82.9 1.2 2.3e-23 82.9 1.2 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Fer4_7 PF12838.7 gi|435852158|ref|YP_007313744.1| - 2.4e-07 31.2 12.5 3.2e-07 30.8 12.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435852158|ref|YP_007313744.1| - 1.6e-06 28.1 10.4 2.7e-06 27.4 10.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435852158|ref|YP_007313744.1| - 1.7e-05 24.9 34.1 0.001 19.2 13.9 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435852158|ref|YP_007313744.1| - 2.4e-05 24.8 7.8 0.043 14.4 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|435852158|ref|YP_007313744.1| - 2.7e-05 23.8 16.4 0.0026 17.5 4.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|435852158|ref|YP_007313744.1| - 6.9e-05 23.6 5.7 0.086 13.7 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435852158|ref|YP_007313744.1| - 8.9e-05 22.5 24.5 0.00073 19.6 14.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435852158|ref|YP_007313744.1| - 0.00033 20.6 12.5 0.024 14.7 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|435852158|ref|YP_007313744.1| - 0.00046 20.6 8.3 0.1 13.1 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435852158|ref|YP_007313744.1| - 0.00047 20.1 16.1 0.064 13.4 4.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|435852158|ref|YP_007313744.1| - 0.0041 17.6 9.0 0.016 15.7 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|435852158|ref|YP_007313744.1| - 0.006 17.5 14.8 4.1 8.4 14.9 2.1 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|435852158|ref|YP_007313744.1| - 0.012 16.0 16.6 6.4e+02 1.3 16.6 2.4 1 1 0 1 1 1 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|435852158|ref|YP_007313744.1| - 0.83 10.7 11.7 0.98 10.5 3.7 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|435852158|ref|YP_007313744.1| - 3.7 7.8 10.4 4.8 7.4 1.1 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|435852159|ref|YP_007313745.1| - 6.5e-51 173.3 0.0 8.1e-51 173.0 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|435852159|ref|YP_007313745.1| - 1.6e-22 79.7 0.0 2.8e-22 78.9 0.0 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|435852159|ref|YP_007313745.1| - 1.3e-05 25.1 0.0 2.4e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain DUF134 PF02001.16 gi|435852159|ref|YP_007313745.1| - 0.1 13.2 0.0 0.23 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF134 POR PF01558.18 gi|435852160|ref|YP_007313746.1| - 1.2e-35 123.2 0.1 1.8e-35 122.6 0.1 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|435852160|ref|YP_007313746.1| - 1.5e-23 83.3 0.1 2.4e-23 82.6 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain P-II PF00543.22 gi|435852161|ref|YP_007313747.1| - 0.00058 20.4 0.5 0.00077 20.0 0.5 1.1 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF1538 PF07556.11 gi|435852162|ref|YP_007313748.1| - 1e-66 224.3 25.0 1.1e-66 224.1 25.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) NADH_oxidored PF08040.11 gi|435852162|ref|YP_007313748.1| - 0.39 10.4 5.2 2.6 7.8 0.9 2.9 1 1 1 2 2 2 0 MNLL subunit DUF1538 PF07556.11 gi|435852163|ref|YP_007313749.1| - 1.8e-66 223.5 27.1 2e-66 223.3 27.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) Usp PF00582.26 gi|435852164|ref|YP_007313750.1| - 4e-36 124.6 0.4 4.5e-36 124.5 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family B12-binding PF02310.19 gi|435852164|ref|YP_007313750.1| - 0.013 15.5 0.0 0.021 14.9 0.0 1.6 1 1 0 1 1 1 0 B12 binding domain DXP_reductoisom PF02670.16 gi|435852164|ref|YP_007313750.1| - 0.065 14.0 0.6 0.25 12.1 0.6 2.0 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Toprim_4 PF13662.6 gi|435852164|ref|YP_007313750.1| - 0.19 12.2 1.3 40 4.8 0.1 3.1 3 0 0 3 3 3 0 Toprim domain Na_H_Exchanger PF00999.21 gi|435852165|ref|YP_007313751.1| - 2.7e-67 227.2 51.1 3.5e-67 226.9 51.1 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|435852165|ref|YP_007313751.1| - 1.3e-23 83.4 0.3 3.2e-23 82.2 0.3 1.7 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|435852165|ref|YP_007313751.1| - 4.1e-16 58.6 0.0 1.6e-15 56.6 0.0 2.1 1 0 0 1 1 1 1 TrkA-C domain HcyBio PF01837.16 gi|435852167|ref|YP_007313753.1| - 4.9e-107 357.8 0.0 5.7e-107 357.6 0.0 1.0 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation Fer4 PF00037.27 gi|435852167|ref|YP_007313753.1| - 4.8e-06 26.2 8.9 0.0028 17.4 0.4 3.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|435852167|ref|YP_007313753.1| - 7.7e-06 25.8 10.4 0.00081 19.4 3.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435852167|ref|YP_007313753.1| - 2.4e-05 24.3 10.8 0.0064 16.6 0.6 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435852167|ref|YP_007313753.1| - 2.5e-05 24.1 9.4 0.011 15.8 0.6 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435852167|ref|YP_007313753.1| - 3.5e-05 23.9 18.5 0.00031 20.8 10.3 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435852167|ref|YP_007313753.1| - 5.4e-05 23.2 6.7 5.4e-05 23.2 6.7 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435852167|ref|YP_007313753.1| - 6e-05 23.6 9.5 0.0003 21.3 9.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|435852167|ref|YP_007313753.1| - 0.006 16.7 3.0 0.016 15.3 3.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435852167|ref|YP_007313753.1| - 0.0095 16.9 7.3 0.58 11.1 0.3 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|435852167|ref|YP_007313753.1| - 0.038 14.6 13.1 8 7.1 4.1 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|435852167|ref|YP_007313753.1| - 0.18 12.6 8.0 1.6 9.6 0.2 3.5 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|435852167|ref|YP_007313753.1| - 0.32 11.5 13.8 0.41 11.1 0.5 2.8 2 1 1 3 3 2 0 4Fe-4S dicluster domain c-SKI_SMAD_bind PF08782.10 gi|435852167|ref|YP_007313753.1| - 0.51 10.6 4.9 4.5 7.6 0.0 2.4 1 1 1 2 2 2 0 c-SKI Smad4 binding domain Fer4_4 PF12800.7 gi|435852167|ref|YP_007313753.1| - 0.64 10.7 11.0 2.1 9.0 0.7 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|435852167|ref|YP_007313753.1| - 1.7 9.2 14.2 2.5 8.7 0.3 3.7 3 1 1 4 4 3 0 4Fe-4S single cluster domain of Ferredoxin I RTX PF02382.15 gi|435852168|ref|YP_007313754.1| - 0.037 13.7 0.2 0.074 12.7 0.2 1.4 1 0 0 1 1 1 0 N-terminal domain in RTX protein tRNA-synt_1b PF00579.25 gi|435852169|ref|YP_007313755.1| - 1.7e-56 191.7 0.0 2e-56 191.5 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|435852169|ref|YP_007313755.1| - 0.0043 16.0 0.0 0.5 9.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) Msg2_C PF12373.8 gi|435852169|ref|YP_007313755.1| - 0.43 10.0 1.6 1 8.8 1.6 1.7 1 0 0 1 1 1 0 Major surface glycoprotein 2 C terminal Thg1 PF04446.12 gi|435852170|ref|YP_007313756.1| - 5.9e-22 78.0 0.0 8.5e-22 77.5 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.6 gi|435852170|ref|YP_007313756.1| - 6.5e-12 45.7 0.1 8.8e-12 45.3 0.1 1.2 1 0 0 1 1 1 1 Thg1 C terminal domain PRC PF05239.16 gi|435852171|ref|YP_007313757.1| - 4.6e-12 45.8 2.4 6.1e-12 45.4 2.4 1.1 1 0 0 1 1 1 1 PRC-barrel domain Ldh_1_N PF00056.23 gi|435852172|ref|YP_007313758.1| - 3.1e-40 137.5 0.4 4.4e-40 137.0 0.4 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|435852172|ref|YP_007313758.1| - 2.1e-25 89.6 0.0 4.2e-25 88.6 0.0 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.16 gi|435852172|ref|YP_007313758.1| - 4.4e-05 23.1 0.1 0.00014 21.5 0.1 1.8 1 1 0 1 1 1 1 Family 4 glycosyl hydrolase 3Beta_HSD PF01073.19 gi|435852172|ref|YP_007313758.1| - 0.0012 17.9 0.0 0.0017 17.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family UDPG_MGDP_dh_N PF03721.14 gi|435852172|ref|YP_007313758.1| - 0.015 14.9 0.6 0.12 11.9 0.6 2.2 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|435852172|ref|YP_007313758.1| - 0.13 12.8 1.5 1.1 9.9 0.2 2.7 3 1 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent RNase_H_2 PF13482.6 gi|435852173|ref|YP_007313759.1| - 2.9e-35 121.7 0.0 4.1e-35 121.2 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|435852173|ref|YP_007313759.1| - 0.0025 17.5 0.0 0.75 9.4 0.0 2.2 2 0 0 2 2 2 2 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB TrkH PF02386.16 gi|435852174|ref|YP_007313760.1| - 1.3e-69 234.9 27.9 2.6e-67 227.4 27.9 2.0 1 1 0 1 1 1 1 Cation transport protein UvrC_HhH_N PF08459.11 gi|435852175|ref|YP_007313761.1| - 6e-55 185.4 0.0 1.4e-54 184.2 0.0 1.6 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.6 gi|435852175|ref|YP_007313761.1| - 1.9e-11 44.4 0.3 5.7e-11 42.9 0.3 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain GIY-YIG PF01541.24 gi|435852175|ref|YP_007313761.1| - 3e-11 43.4 0.3 1e-10 41.7 0.1 2.1 2 0 0 2 2 2 1 GIY-YIG catalytic domain HHH_2 PF12826.7 gi|435852175|ref|YP_007313761.1| - 1.6e-10 40.9 0.1 7.1e-10 38.8 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif UVR PF02151.19 gi|435852175|ref|YP_007313761.1| - 7e-09 35.2 5.7 1.7e-08 33.9 5.7 1.7 1 0 0 1 1 1 1 UvrB/uvrC motif HHH_3 PF12836.7 gi|435852175|ref|YP_007313761.1| - 2e-05 24.8 0.2 0.0003 21.0 0.0 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH PF00633.23 gi|435852175|ref|YP_007313761.1| - 6.6e-05 22.6 0.1 0.0042 16.9 0.0 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif TFIIA_gamma_N PF02268.16 gi|435852175|ref|YP_007313761.1| - 0.00019 21.4 0.0 0.49 10.4 0.0 2.6 2 0 0 2 2 2 2 Transcription initiation factor IIA, gamma subunit, helical domain LSDAT_euk PF18139.1 gi|435852175|ref|YP_007313761.1| - 0.13 11.6 0.0 3.4 7.0 0.0 2.5 3 0 0 3 3 3 0 SLOG in TRPM 5_3_exonuc PF01367.20 gi|435852175|ref|YP_007313761.1| - 0.26 11.9 0.2 0.26 11.9 0.2 2.9 4 1 0 4 4 4 0 5'-3' exonuclease, C-terminal SAM fold GPI PF06560.11 gi|435852176|ref|YP_007313762.1| - 6.6e-45 152.6 1.4 8.2e-45 152.3 1.4 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.11 gi|435852176|ref|YP_007313762.1| - 4.5e-05 23.1 0.5 0.00011 21.8 0.1 1.9 2 1 0 2 2 2 1 Cupin domain Cupin_1 PF00190.22 gi|435852176|ref|YP_007313762.1| - 0.0002 21.0 0.0 0.00032 20.3 0.0 1.2 1 0 0 1 1 1 1 Cupin ARD PF03079.14 gi|435852176|ref|YP_007313762.1| - 0.045 13.9 0.0 0.095 12.9 0.0 1.4 1 0 0 1 1 1 0 ARD/ARD' family NRD1_2 PF01995.16 gi|435852177|ref|YP_007313763.1| - 7.8e-97 323.2 1.1 8.7e-97 323.1 1.1 1.0 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 DHHA1 PF02272.19 gi|435852178|ref|YP_007313764.1| - 3.4e-18 66.4 0.6 8.6e-18 65.1 0.6 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|435852178|ref|YP_007313764.1| - 0.0016 18.6 0.3 0.003 17.8 0.3 1.4 1 0 0 1 1 1 1 DHH family RST PF12174.8 gi|435852178|ref|YP_007313764.1| - 0.16 11.9 0.1 0.37 10.7 0.1 1.6 1 0 0 1 1 1 0 RCD1-SRO-TAF4 (RST) plant domain RecU PF03838.14 gi|435852179|ref|YP_007313765.1| - 0.0047 16.9 0.0 0.0069 16.4 0.0 1.2 1 0 0 1 1 1 1 Recombination protein U MSP1a PF11670.8 gi|435852180|ref|YP_007313766.1| - 0.14 11.5 0.1 0.14 11.5 0.1 1.0 1 0 0 1 1 1 0 Major surface protein 1a (MSP1a) TMEM100 PF16311.5 gi|435852180|ref|YP_007313766.1| - 0.23 11.1 1.6 0.29 10.7 1.6 1.1 1 0 0 1 1 1 0 Transmembrane protein 100 SLATT_5 PF18160.1 gi|435852180|ref|YP_007313766.1| - 1.6 8.0 5.2 2 7.7 5.2 1.3 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain family 5 DUF3671 PF12420.8 gi|435852180|ref|YP_007313766.1| - 2.1 8.4 6.4 3.2 7.9 6.4 1.3 1 1 0 1 1 1 0 Protein of unknown function ODV-E18 PF10717.9 gi|435852180|ref|YP_007313766.1| - 4.6 7.2 10.5 0.19 11.6 3.7 1.9 1 1 1 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 OapA_N PF08525.11 gi|435852180|ref|YP_007313766.1| - 4.7 7.3 12.6 0.28 11.2 1.2 2.2 2 0 0 2 2 2 0 Opacity-associated protein A N-terminal motif DUF1699 PF08004.11 gi|435852181|ref|YP_007313767.1| - 5.5e-65 216.9 1.1 6.1e-65 216.8 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF1699 PF08004.11 gi|435852182|ref|YP_007313768.1| - 9.8e-58 193.5 1.0 1.1e-57 193.3 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Aida_N PF08910.10 gi|435852182|ref|YP_007313768.1| - 0.016 15.6 0.1 0.086 13.2 0.0 1.9 1 1 1 2 2 2 0 Aida N-terminus Radical_SAM_C PF16199.5 gi|435852184|ref|YP_007313770.1| - 1.4e-25 89.1 0.1 2.9e-25 88.1 0.1 1.6 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|435852184|ref|YP_007313770.1| - 5.2e-18 66.0 0.0 1.2e-17 64.8 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|435852184|ref|YP_007313770.1| - 3.7e-07 30.4 0.2 7.6e-07 29.4 0.2 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|435852184|ref|YP_007313770.1| - 0.0012 18.8 0.2 0.0024 17.8 0.2 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain RHH_8 PF17723.1 gi|435852184|ref|YP_007313770.1| - 0.0043 17.2 0.0 0.014 15.5 0.0 1.9 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family DNA_pol3_delta2 PF13177.6 gi|435852185|ref|YP_007313771.1| - 4.6e-14 52.5 0.0 6.9e-14 51.9 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|435852185|ref|YP_007313771.1| - 1.1e-09 38.5 0.0 1.1e-08 35.3 0.0 2.3 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA PF00004.29 gi|435852185|ref|YP_007313771.1| - 1.8e-09 38.1 0.0 3.2e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|435852185|ref|YP_007313771.1| - 0.0003 20.6 0.1 0.018 14.8 0.0 3.1 3 1 1 4 4 4 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|435852185|ref|YP_007313771.1| - 0.00044 20.2 0.0 0.00068 19.6 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|435852185|ref|YP_007313771.1| - 0.00096 19.2 0.1 0.0046 17.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain DNA_pol3_delta PF06144.13 gi|435852185|ref|YP_007313771.1| - 0.0011 18.8 0.0 0.0022 17.8 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_24 PF13479.6 gi|435852185|ref|YP_007313771.1| - 0.0013 18.5 0.1 0.0036 17.1 0.1 1.7 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|435852185|ref|YP_007313771.1| - 0.005 16.1 0.0 0.057 12.6 0.0 2.1 1 1 0 2 2 2 1 TIP49 P-loop domain AAA_16 PF13191.6 gi|435852185|ref|YP_007313771.1| - 0.018 15.4 0.0 0.052 13.9 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|435852185|ref|YP_007313771.1| - 0.042 14.4 0.0 0.097 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|435852185|ref|YP_007313771.1| - 0.08 13.3 0.0 0.18 12.2 0.0 1.6 1 1 0 1 1 1 0 RNA helicase IstB_IS21 PF01695.17 gi|435852185|ref|YP_007313771.1| - 0.11 12.3 0.0 0.67 9.7 0.0 2.2 3 0 0 3 3 3 0 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|435852185|ref|YP_007313771.1| - 0.11 12.4 0.0 0.26 11.1 0.0 1.7 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea DUF3486 PF11985.8 gi|435852185|ref|YP_007313771.1| - 0.14 12.6 0.1 0.35 11.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3486) SecD_SecF PF02355.16 gi|435852186|ref|YP_007313772.1| - 4e-15 55.7 7.7 4e-15 55.7 7.7 1.9 2 0 0 2 2 2 1 Protein export membrane protein MMPL PF03176.15 gi|435852186|ref|YP_007313772.1| - 0.00032 19.7 11.1 0.00032 19.7 11.1 2.1 2 0 0 2 2 2 1 MMPL family Patched PF02460.18 gi|435852186|ref|YP_007313772.1| - 4.2 5.3 10.1 6.2 4.8 10.1 1.1 1 0 0 1 1 1 0 Patched family SecD_SecF PF02355.16 gi|435852187|ref|YP_007313773.1| - 7e-35 120.1 17.0 7e-35 120.1 17.0 1.4 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.14 gi|435852187|ref|YP_007313773.1| - 7.9e-05 22.0 0.0 0.00023 20.6 0.0 1.8 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.18 gi|435852187|ref|YP_007313773.1| - 0.01 13.9 13.7 0.015 13.4 13.7 1.1 1 0 0 1 1 1 0 Patched family DUF5392 PF17370.2 gi|435852187|ref|YP_007313773.1| - 1.6 8.8 4.3 4.6 7.3 1.2 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5392) dCMP_cyt_deam_1 PF00383.23 gi|435852188|ref|YP_007313774.1| - 3.3e-29 100.8 1.5 4.3e-29 100.4 1.5 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|435852188|ref|YP_007313774.1| - 9.1e-20 70.8 0.4 1.2e-19 70.5 0.4 1.1 1 0 0 1 1 1 1 MafB19-like deaminase APOBEC_N PF08210.11 gi|435852188|ref|YP_007313774.1| - 0.00095 19.1 1.5 0.0015 18.4 1.5 1.4 1 1 0 1 1 1 1 APOBEC-like N-terminal domain Bd3614-deam PF14439.6 gi|435852188|ref|YP_007313774.1| - 0.0068 16.5 0.8 0.016 15.3 0.4 1.7 1 1 1 2 2 2 1 Bd3614-like deaminase NAD1 PF18778.1 gi|435852188|ref|YP_007313774.1| - 0.03 14.4 0.5 0.039 14.1 0.5 1.1 1 0 0 1 1 1 0 Novel AID APOBEC clade 1 SNAD4 PF18750.1 gi|435852188|ref|YP_007313774.1| - 0.06 13.5 0.4 0.089 12.9 0.4 1.2 1 0 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 4 APOBEC3 PF18771.1 gi|435852188|ref|YP_007313774.1| - 0.093 12.8 0.4 0.13 12.4 0.4 1.2 1 0 0 1 1 1 0 APOBEC3 APOBEC2 PF18772.1 gi|435852188|ref|YP_007313774.1| - 0.13 12.3 0.2 0.18 11.8 0.2 1.2 1 0 0 1 1 1 0 APOBEC2 zf-C3HC4 PF00097.25 gi|435852188|ref|YP_007313774.1| - 0.14 12.0 5.1 0.6 10.0 5.1 2.1 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) F420_ligase PF01996.16 gi|435852189|ref|YP_007313775.1| - 2e-59 200.9 0.2 2.6e-59 200.6 0.2 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase HSP20 PF00011.21 gi|435852190|ref|YP_007313776.1| - 1e-22 80.2 2.7 1.2e-22 79.9 2.7 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|435852190|ref|YP_007313776.1| - 1.1e-12 47.3 0.0 1.6e-12 46.8 0.0 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|435852190|ref|YP_007313776.1| - 1.9e-05 25.6 0.1 3e-05 25.0 0.1 1.3 1 0 0 1 1 1 1 CS domain FKBP26_C PF18046.1 gi|435852190|ref|YP_007313776.1| - 0.0069 16.5 1.5 1.2 9.3 0.3 2.3 2 0 0 2 2 2 2 FKBP26_C-terminal GvpH PF05455.11 gi|435852190|ref|YP_007313776.1| - 0.081 13.0 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 GvpH hNIFK_binding PF12196.8 gi|435852190|ref|YP_007313776.1| - 4.9 6.7 5.4 1 8.9 1.2 2.0 1 1 1 2 2 2 0 FHA Ki67 binding domain of hNIFK PhosphMutase PF10143.9 gi|435852191|ref|YP_007313777.1| - 6.6e-60 201.8 0.0 9.2e-60 201.4 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|435852191|ref|YP_007313777.1| - 1.8e-38 132.3 0.2 2e-38 132.2 0.2 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|435852191|ref|YP_007313777.1| - 0.0063 16.1 0.2 0.012 15.2 0.2 1.5 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase S-layer PF07752.11 gi|435852192|ref|YP_007313778.1| - 3.1e-14 52.6 10.8 9e-14 51.1 0.9 2.4 1 1 1 2 2 2 2 S-layer protein AA_kinase PF00696.28 gi|435852193|ref|YP_007313779.1| - 1.5e-47 162.2 0.2 2.6e-47 161.4 0.2 1.4 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.6 gi|435852193|ref|YP_007313779.1| - 5.3e-22 77.4 3.0 7.5e-10 38.5 0.1 2.9 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 gi|435852193|ref|YP_007313779.1| - 1.6e-19 69.4 2.6 1.3e-08 34.4 0.2 2.8 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.6 gi|435852193|ref|YP_007313779.1| - 1 9.4 3.2 2.7 8.0 0.1 2.7 3 0 0 3 3 3 0 ACT domain AIRS_C PF02769.22 gi|435852194|ref|YP_007313780.1| - 5e-19 69.0 0.0 9e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|435852194|ref|YP_007313780.1| - 2.5e-15 56.9 0.5 4.6e-15 56.1 0.5 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF1894 PF08979.11 gi|435852195|ref|YP_007313781.1| - 9.1e-32 109.3 0.1 1e-31 109.1 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) OrfB_IS605 PF01385.19 gi|435852196|ref|YP_007313782.1| - 1.6e-28 99.3 1.1 3.3e-28 98.3 1.1 1.5 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|435852196|ref|YP_007313782.1| - 3.9e-23 80.7 0.4 7.4e-22 76.6 1.4 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 gi|435852196|ref|YP_007313782.1| - 4e-21 74.7 0.5 7.9e-21 73.8 0.5 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-piccolo PF05715.13 gi|435852196|ref|YP_007313782.1| - 0.0025 17.9 1.3 0.0055 16.8 1.3 1.5 1 0 0 1 1 1 1 Piccolo Zn-finger Borrelia_REV PF03978.13 gi|435852196|ref|YP_007313782.1| - 0.06 13.3 5.2 0.55 10.2 0.4 2.5 2 0 0 2 2 2 0 Borrelia burgdorferi REV protein Rep_fac-A_C PF08646.10 gi|435852196|ref|YP_007313782.1| - 0.13 12.0 0.0 0.13 12.0 0.0 3.3 2 1 0 3 3 3 0 Replication factor-A C terminal domain HypA PF01155.19 gi|435852196|ref|YP_007313782.1| - 0.15 12.1 0.2 0.31 11.1 0.2 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RanBP PF00641.18 gi|435852196|ref|YP_007313782.1| - 7.6 6.0 9.4 13 5.2 1.9 2.5 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others Rubredoxin_2 PF18073.1 gi|435852196|ref|YP_007313782.1| - 8.4 6.2 8.4 20 5.0 5.8 2.8 2 1 0 2 2 2 0 Rubredoxin metal binding domain BPL_N PF09825.9 gi|435852197|ref|YP_007313783.1| - 0.0016 17.6 0.1 0.047 12.8 0.0 2.1 2 0 0 2 2 2 2 Biotin-protein ligase, N terminal Ntox28 PF15605.6 gi|435852197|ref|YP_007313783.1| - 0.074 13.3 0.1 0.16 12.2 0.0 1.5 2 0 0 2 2 2 0 Bacterial toxin 28 MtrH PF02007.18 gi|435852199|ref|YP_007313785.1| - 2e-140 467.1 1.4 2.2e-140 467.0 1.4 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit MtrG PF04210.13 gi|435852200|ref|YP_007313786.1| - 6.5e-33 112.4 0.4 7.2e-33 112.2 0.4 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G MtrF PF09472.10 gi|435852201|ref|YP_007313787.1| - 5e-29 99.5 1.8 5.9e-29 99.2 1.8 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) DUF389 PF04087.14 gi|435852201|ref|YP_007313787.1| - 0.014 15.4 0.6 0.021 14.9 0.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF389) DUF2570 PF10828.8 gi|435852201|ref|YP_007313787.1| - 0.15 11.8 0.4 0.22 11.3 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2570) MtrA PF04208.14 gi|435852202|ref|YP_007313788.1| - 5e-85 283.5 1.5 6.6e-85 283.1 1.5 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.10 gi|435852202|ref|YP_007313788.1| - 0.54 9.7 2.6 0.58 9.6 0.9 2.0 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrB PF05440.12 gi|435852203|ref|YP_007313789.1| - 7.4e-39 132.1 0.0 8.8e-39 131.8 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrC PF04211.13 gi|435852204|ref|YP_007313790.1| - 3e-112 374.1 33.5 3.4e-112 373.9 33.5 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C DUF308 PF03729.13 gi|435852204|ref|YP_007313790.1| - 0.003 17.9 5.9 0.003 17.9 5.9 4.9 3 2 0 4 4 4 1 Short repeat of unknown function (DUF308) TRI9 PF08195.11 gi|435852204|ref|YP_007313790.1| - 0.22 11.4 2.2 0.54 10.2 2.2 1.6 1 0 0 1 1 1 0 TRI9 protein MtrD PF04207.12 gi|435852205|ref|YP_007313791.1| - 2.5e-100 334.7 28.5 3e-100 334.4 28.5 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrE PF04206.12 gi|435852206|ref|YP_007313792.1| - 1.3e-139 464.1 9.8 1.5e-139 463.9 9.8 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E AP_endonuc_2 PF01261.24 gi|435852207|ref|YP_007313793.1| - 5.4e-28 97.9 0.0 7.1e-28 97.5 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HMGL-like PF00682.19 gi|435852207|ref|YP_007313793.1| - 0.049 13.2 0.0 0.068 12.7 0.0 1.3 1 0 0 1 1 1 0 HMGL-like PI-PLC-X PF00388.19 gi|435852207|ref|YP_007313793.1| - 0.083 12.5 0.0 0.16 11.6 0.0 1.5 1 1 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain Usp PF00582.26 gi|435852208|ref|YP_007313794.1| - 4.1e-21 76.0 0.1 7.3e-21 75.2 0.1 1.4 1 1 0 1 1 1 1 Universal stress protein family Exotox-A_bind PF09101.10 gi|435852208|ref|YP_007313794.1| - 0.048 13.0 0.1 0.05 12.9 0.1 1.1 1 0 0 1 1 1 0 Exotoxin A binding zf_C2H2_13 PF18508.1 gi|435852209|ref|YP_007313795.1| - 0.046 13.3 0.1 0.08 12.6 0.1 1.3 1 0 0 1 1 1 0 Zinc finger domain SRP19 PF01922.17 gi|435852211|ref|YP_007313797.1| - 5.6e-24 84.9 0.1 6.8e-24 84.6 0.1 1.1 1 0 0 1 1 1 1 SRP19 protein Sec61_beta PF03911.16 gi|435852212|ref|YP_007313798.1| - 1.2e-17 63.7 0.4 1.2e-17 63.7 0.4 1.3 2 0 0 2 2 2 1 Sec61beta family IF-2B PF01008.17 gi|435852213|ref|YP_007313799.1| - 3.8e-83 278.9 0.0 4.6e-83 278.7 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family HD PF01966.22 gi|435852215|ref|YP_007313801.1| - 3.2e-13 50.0 0.3 1.3e-12 48.0 0.1 2.2 2 0 0 2 2 2 1 HD domain HDOD PF08668.12 gi|435852215|ref|YP_007313801.1| - 0.0027 17.2 0.1 0.0068 15.9 0.0 1.6 2 0 0 2 2 2 1 HDOD domain Replic_Relax PF13814.6 gi|435852215|ref|YP_007313801.1| - 0.1 12.6 0.3 0.28 11.2 0.3 1.7 1 0 0 1 1 1 0 Replication-relaxation GCD14 PF08704.10 gi|435852216|ref|YP_007313802.1| - 1e-13 51.5 0.0 5.3e-12 45.9 0.0 2.1 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|435852216|ref|YP_007313802.1| - 1.2e-10 41.3 0.0 2e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|435852216|ref|YP_007313802.1| - 2.7e-10 40.8 0.0 7.1e-10 39.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435852216|ref|YP_007313802.1| - 1.6e-08 35.1 0.0 3.4e-08 34.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|435852216|ref|YP_007313802.1| - 4.1e-07 29.4 0.0 5e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.7 gi|435852216|ref|YP_007313802.1| - 4.7e-07 29.8 0.1 6.9e-07 29.3 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|435852216|ref|YP_007313802.1| - 7.8e-07 28.8 0.1 1e-06 28.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|435852216|ref|YP_007313802.1| - 8.3e-06 25.7 0.0 1.1e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|435852216|ref|YP_007313802.1| - 0.0001 21.9 0.2 0.00016 21.3 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|435852216|ref|YP_007313802.1| - 0.00028 21.6 0.0 0.0007 20.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|435852216|ref|YP_007313802.1| - 0.00039 19.8 0.1 0.00055 19.3 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|435852216|ref|YP_007313802.1| - 0.0013 18.2 0.0 0.0018 17.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.6 gi|435852216|ref|YP_007313802.1| - 0.0058 16.5 0.0 0.0086 15.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.11 gi|435852216|ref|YP_007313802.1| - 0.0093 15.9 0.0 0.029 14.2 0.0 1.8 1 1 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_4 PF02390.17 gi|435852216|ref|YP_007313802.1| - 0.026 14.0 0.0 0.4 10.1 0.1 2.1 1 1 1 2 2 2 0 Putative methyltransferase N6_N4_Mtase PF01555.18 gi|435852216|ref|YP_007313802.1| - 0.096 12.4 0.0 0.55 9.9 0.0 1.9 2 0 0 2 2 2 0 DNA methylase ADH_zinc_N PF00107.26 gi|435852216|ref|YP_007313802.1| - 0.12 12.3 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Rad51 PF08423.11 gi|435852217|ref|YP_007313803.1| - 1.5e-35 122.7 0.5 1.7e-35 122.5 0.5 1.1 1 0 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|435852217|ref|YP_007313803.1| - 1.3e-11 44.3 2.9 6.6e-11 42.0 2.9 1.8 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|435852217|ref|YP_007313803.1| - 1.8e-11 44.0 0.0 3e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|435852217|ref|YP_007313803.1| - 1.4e-08 34.6 0.5 1.6e-08 34.4 0.5 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein SRP54 PF00448.22 gi|435852217|ref|YP_007313803.1| - 3.8e-07 29.9 0.0 5.3e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Zot PF05707.12 gi|435852217|ref|YP_007313803.1| - 8e-07 28.9 0.1 1e-06 28.5 0.1 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_24 PF13479.6 gi|435852217|ref|YP_007313803.1| - 1.7e-06 27.9 0.0 2.7e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.9 gi|435852217|ref|YP_007313803.1| - 4.3e-06 25.9 0.1 7.4e-05 21.8 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.23 gi|435852217|ref|YP_007313803.1| - 0.00058 19.9 0.0 0.00075 19.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF87 PF01935.17 gi|435852217|ref|YP_007313803.1| - 0.00082 19.5 0.1 0.054 13.6 0.0 2.0 1 1 0 2 2 2 1 Helicase HerA, central domain PhoH PF02562.16 gi|435852217|ref|YP_007313803.1| - 0.00084 18.8 0.0 0.0022 17.5 0.0 1.6 2 0 0 2 2 2 1 PhoH-like protein AAA_31 PF13614.6 gi|435852217|ref|YP_007313803.1| - 0.0011 18.9 0.0 0.0014 18.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|435852217|ref|YP_007313803.1| - 0.0019 17.6 0.1 0.95 8.7 0.0 2.1 1 1 1 2 2 2 2 DnaB-like helicase C terminal domain PIF1 PF05970.14 gi|435852217|ref|YP_007313803.1| - 0.0044 16.2 0.0 0.0058 15.8 0.0 1.2 1 0 0 1 1 1 1 PIF1-like helicase CLP1_P PF16575.5 gi|435852217|ref|YP_007313803.1| - 0.017 14.9 0.0 0.032 14.0 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop KdpD PF02702.17 gi|435852217|ref|YP_007313803.1| - 0.017 14.6 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain ATPase_2 PF01637.18 gi|435852217|ref|YP_007313803.1| - 0.02 14.8 0.0 0.027 14.4 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|435852217|ref|YP_007313803.1| - 0.023 14.4 0.1 0.053 13.2 0.1 1.7 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|435852217|ref|YP_007313803.1| - 0.025 15.1 0.0 0.044 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain CobA_CobO_BtuR PF02572.15 gi|435852217|ref|YP_007313803.1| - 0.027 14.7 0.3 0.73 10.1 0.1 2.1 2 0 0 2 2 2 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ArsA_ATPase PF02374.15 gi|435852217|ref|YP_007313803.1| - 0.029 13.5 0.2 0.077 12.2 0.2 1.7 1 1 0 1 1 1 0 Anion-transporting ATPase ABC_tran PF00005.27 gi|435852217|ref|YP_007313803.1| - 0.032 14.7 0.0 0.061 13.8 0.0 1.4 1 1 0 1 1 1 0 ABC transporter MeaB PF03308.16 gi|435852217|ref|YP_007313803.1| - 0.058 12.4 0.0 0.093 11.7 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|435852217|ref|YP_007313803.1| - 0.062 13.0 0.0 0.094 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain RVT_1 PF00078.27 gi|435852217|ref|YP_007313803.1| - 0.071 12.6 0.0 0.095 12.2 0.0 1.1 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) ATP_bind_1 PF03029.17 gi|435852217|ref|YP_007313803.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Glutaredoxin PF00462.24 gi|435852218|ref|YP_007313804.1| - 1.4e-07 31.6 0.0 1.8e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.14 gi|435852218|ref|YP_007313804.1| - 0.00039 20.8 0.0 0.00048 20.5 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.6 gi|435852218|ref|YP_007313804.1| - 0.014 15.4 0.1 0.017 15.2 0.1 1.3 1 1 0 1 1 1 0 Thioredoxin domain GST_N_3 PF13417.6 gi|435852218|ref|YP_007313804.1| - 0.085 13.3 0.0 0.11 12.9 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.6 gi|435852218|ref|YP_007313804.1| - 0.09 13.2 0.1 0.093 13.2 0.1 1.3 1 1 0 1 1 1 0 Thioredoxin-like domain NRDD PF13597.6 gi|435852219|ref|YP_007313805.1| - 2.8e-157 524.9 0.0 3.4e-157 524.6 0.0 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Radical_SAM PF04055.21 gi|435852220|ref|YP_007313806.1| - 4.2e-16 59.8 0.0 6.5e-16 59.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|435852220|ref|YP_007313806.1| - 3.7e-10 40.2 0.0 6.2e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|435852220|ref|YP_007313806.1| - 9e-07 29.0 0.0 2.8e-06 27.5 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain SelA PF03841.13 gi|435852220|ref|YP_007313806.1| - 0.1 11.6 0.1 0.14 11.2 0.1 1.1 1 0 0 1 1 1 0 L-seryl-tRNA selenium transferase DUF4349 PF14257.6 gi|435852221|ref|YP_007313807.1| - 1.2e-61 207.9 2.0 1.8e-61 207.3 2.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) LOH1CR12 PF10158.9 gi|435852221|ref|YP_007313807.1| - 0.0041 17.1 0.4 0.049 13.6 0.1 2.1 1 1 1 2 2 2 1 Tumour suppressor protein Corona_S2 PF01601.16 gi|435852221|ref|YP_007313807.1| - 0.028 12.9 0.1 0.042 12.4 0.1 1.3 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein PI3K_P85_iSH2 PF16454.5 gi|435852221|ref|YP_007313807.1| - 0.1 12.2 0.4 0.15 11.7 0.4 1.2 1 0 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain AIRS PF00586.24 gi|435852222|ref|YP_007313808.1| - 3.4e-24 85.3 0.4 8e-24 84.1 0.4 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|435852222|ref|YP_007313808.1| - 8e-07 29.3 0.1 1.3e-06 28.6 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain S-layer PF07752.11 gi|435852223|ref|YP_007313809.1| - 1.6e-199 659.9 32.2 4.6e-100 333.9 10.9 2.4 2 0 0 2 2 2 2 S-layer protein BiPBP_C PF06832.12 gi|435852223|ref|YP_007313809.1| - 7.5e-18 64.4 0.4 0.49 10.5 0.0 7.8 7 0 0 7 7 7 5 Penicillin-Binding Protein C-terminus Family PKD_3 PF16820.5 gi|435852223|ref|YP_007313809.1| - 1.7e-08 34.1 28.2 0.042 13.6 0.2 10.3 10 1 1 11 11 10 4 PKD-like domain PKD PF00801.20 gi|435852223|ref|YP_007313809.1| - 3.7e-08 33.1 49.5 0.0051 16.6 2.2 8.9 8 0 0 8 8 8 4 PKD domain PEGA PF08308.11 gi|435852223|ref|YP_007313809.1| - 7.3e-07 29.0 4.2 0.029 14.3 0.0 4.9 4 0 0 4 4 4 2 PEGA domain Ig_3 PF13927.6 gi|435852223|ref|YP_007313809.1| - 1.1e-06 29.1 22.5 1.2 9.8 0.3 7.7 5 1 1 6 6 6 2 Immunoglobulin domain tRNA-synt_1c_C PF03950.18 gi|435852223|ref|YP_007313809.1| - 0.00011 22.1 0.5 0.61 10.0 0.0 3.0 2 1 1 3 3 3 2 tRNA synthetases class I (E and Q), anti-codon binding domain I-set PF07679.16 gi|435852223|ref|YP_007313809.1| - 0.00037 20.5 15.6 0.19 11.8 0.0 7.6 7 1 1 8 8 8 1 Immunoglobulin I-set domain CarboxypepD_reg PF13620.6 gi|435852223|ref|YP_007313809.1| - 0.0073 16.5 45.4 0.098 12.9 0.2 9.1 8 1 1 9 9 9 3 Carboxypeptidase regulatory-like domain DUF4198 PF10670.9 gi|435852223|ref|YP_007313809.1| - 0.011 16.1 6.0 2.8 8.3 0.0 5.1 4 1 0 5 5 5 0 Domain of unknown function (DUF4198) DUF2846 PF11008.8 gi|435852223|ref|YP_007313809.1| - 0.014 15.4 0.4 6.3 6.9 0.0 4.3 4 0 0 4 4 4 0 Protein of unknown function (DUF2846) C1-set PF07654.15 gi|435852223|ref|YP_007313809.1| - 0.015 15.6 12.2 1.4 9.4 0.3 6.4 6 0 0 6 6 6 0 Immunoglobulin C1-set domain PapC_N PF13954.6 gi|435852223|ref|YP_007313809.1| - 0.073 13.1 1.5 1.1 9.2 0.0 3.4 4 0 0 4 4 4 0 PapC N-terminal domain PrcB_C PF14343.6 gi|435852223|ref|YP_007313809.1| - 0.25 11.5 3.9 10 6.4 0.2 2.7 2 0 0 2 2 2 0 PrcB C-terminal Ig_2 PF13895.6 gi|435852223|ref|YP_007313809.1| - 0.59 10.5 17.3 17 5.9 0.1 6.8 8 0 0 8 8 8 0 Immunoglobulin domain Ig_5 PF16681.5 gi|435852223|ref|YP_007313809.1| - 0.61 10.5 4.3 1.6e+02 2.8 0.0 5.7 7 0 0 7 7 6 0 Ig-like domain on T-cell surface glycoprotein CD3 epsilon chain TTR-52 PF01060.23 gi|435852223|ref|YP_007313809.1| - 0.72 10.6 3.4 13 6.6 0.0 4.1 4 0 0 4 4 3 0 Transthyretin-like family HTH_3 PF01381.22 gi|435852224|ref|YP_007313810.1| - 9e-08 32.1 0.1 2.1e-07 30.9 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix PrpR_N PF06506.11 gi|435852224|ref|YP_007313810.1| - 0.00067 19.3 1.4 0.001 18.7 0.7 1.6 2 0 0 2 2 2 1 Propionate catabolism activator HTH_31 PF13560.6 gi|435852224|ref|YP_007313810.1| - 0.002 18.4 0.0 0.0041 17.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Peptidase_S64 PF08192.11 gi|435852224|ref|YP_007313810.1| - 0.0058 15.2 0.1 0.0072 14.9 0.1 1.1 1 0 0 1 1 1 1 Peptidase family S64 HTH_26 PF13443.6 gi|435852224|ref|YP_007313810.1| - 0.029 14.8 0.1 0.056 13.9 0.1 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain NMT1_2 PF13379.6 gi|435852225|ref|YP_007313811.1| - 4.3e-38 131.4 0.2 7.5e-38 130.7 0.2 1.3 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|435852225|ref|YP_007313811.1| - 8.3e-21 74.9 0.0 1.1e-20 74.6 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|435852225|ref|YP_007313811.1| - 4.2e-09 36.4 0.0 7.5e-09 35.5 0.0 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 gi|435852225|ref|YP_007313811.1| - 6.4e-05 22.5 0.0 0.00014 21.3 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1_3 PF16868.5 gi|435852225|ref|YP_007313811.1| - 0.00086 18.8 0.0 0.0081 15.6 0.0 2.1 2 0 0 2 2 2 1 NMT1-like family DctP PF03480.13 gi|435852225|ref|YP_007313811.1| - 0.0014 18.0 0.0 0.0044 16.4 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 LysR_substrate PF03466.20 gi|435852225|ref|YP_007313811.1| - 0.085 12.2 0.0 0.65 9.3 0.0 2.1 1 1 1 2 2 2 0 LysR substrate binding domain Spore_III_AB PF09548.10 gi|435852225|ref|YP_007313811.1| - 0.12 12.5 0.1 0.19 11.8 0.1 1.3 1 0 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) VitK2_biosynth PF02621.14 gi|435852225|ref|YP_007313811.1| - 0.12 11.9 0.1 0.42 10.1 0.1 1.8 1 1 0 1 1 1 0 Menaquinone biosynthesis BPD_transp_1 PF00528.22 gi|435852226|ref|YP_007313812.1| - 1.8e-21 76.7 11.0 1.8e-21 76.7 11.0 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|435852227|ref|YP_007313813.1| - 1.1e-34 119.9 0.0 1.7e-34 119.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435852227|ref|YP_007313813.1| - 1.4e-07 31.7 0.1 0.0012 18.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|435852227|ref|YP_007313813.1| - 4.8e-07 30.3 0.2 6.5e-06 26.6 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|435852227|ref|YP_007313813.1| - 0.00098 18.9 0.0 0.0013 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|435852227|ref|YP_007313813.1| - 0.0011 18.9 0.0 0.0026 17.7 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|435852227|ref|YP_007313813.1| - 0.0013 18.7 0.0 0.0023 17.9 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|435852227|ref|YP_007313813.1| - 0.0014 19.2 0.0 0.0024 18.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|435852227|ref|YP_007313813.1| - 0.0021 18.3 0.4 0.016 15.5 0.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|435852227|ref|YP_007313813.1| - 0.0039 17.4 0.0 0.02 15.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|435852227|ref|YP_007313813.1| - 0.0043 17.5 0.0 0.015 15.7 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|435852227|ref|YP_007313813.1| - 0.016 15.0 0.0 0.028 14.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|435852227|ref|YP_007313813.1| - 0.018 14.5 0.0 4.1 6.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ATPase_2 PF01637.18 gi|435852227|ref|YP_007313813.1| - 0.02 14.8 0.0 0.16 11.8 0.0 2.2 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|435852227|ref|YP_007313813.1| - 0.02 14.8 0.0 0.05 13.5 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|435852227|ref|YP_007313813.1| - 0.022 14.9 0.1 0.076 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|435852227|ref|YP_007313813.1| - 0.025 14.6 0.0 0.083 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|435852227|ref|YP_007313813.1| - 0.038 13.2 0.1 0.11 11.7 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.6 gi|435852227|ref|YP_007313813.1| - 0.072 12.8 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|435852227|ref|YP_007313813.1| - 0.096 13.2 0.3 0.36 11.4 0.0 2.1 3 0 0 3 3 2 0 AAA domain PhoH PF02562.16 gi|435852227|ref|YP_007313813.1| - 0.11 12.0 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein PduV-EutP PF10662.9 gi|435852227|ref|YP_007313813.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation IstB_IS21 PF01695.17 gi|435852227|ref|YP_007313813.1| - 0.14 11.9 0.0 0.35 10.6 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|435852227|ref|YP_007313813.1| - 0.15 12.4 0.0 0.36 11.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.6 gi|435852227|ref|YP_007313813.1| - 0.17 11.4 0.0 0.92 9.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|435852227|ref|YP_007313813.1| - 0.19 11.2 0.0 0.32 10.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Bactofilin PF04519.13 gi|435852228|ref|YP_007313814.1| - 1.6e-06 28.3 0.5 0.013 15.8 0.2 2.1 1 1 1 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|435852228|ref|YP_007313814.1| - 0.0035 17.0 1.4 0.35 10.7 0.1 3.6 3 1 1 4 4 4 2 Bacterial transferase hexapeptide (six repeats) SQHop_cyclase_C PF13243.6 gi|435852229|ref|YP_007313815.1| - 0.00026 20.2 6.6 0.1 11.7 0.1 3.5 2 1 1 4 4 4 2 Squalene-hopene cyclase C-terminal domain SQHop_cyclase_N PF13249.6 gi|435852229|ref|YP_007313815.1| - 0.0069 15.5 0.7 1.2 8.2 0.2 2.9 2 1 1 3 3 3 2 Squalene-hopene cyclase N-terminal domain TED_complement PF07678.14 gi|435852229|ref|YP_007313815.1| - 0.029 13.4 0.4 6.2 5.8 0.0 3.0 2 1 1 3 3 3 0 A-macroglobulin TED domain Prenyltrans PF00432.21 gi|435852229|ref|YP_007313815.1| - 0.12 12.1 4.0 1.6 8.5 0.1 3.5 4 0 0 4 4 4 0 Prenyltransferase and squalene oxidase repeat ParA PF10609.9 gi|435852230|ref|YP_007313816.1| - 1.5e-102 342.3 1.8 1.7e-102 342.1 1.8 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|435852230|ref|YP_007313816.1| - 2.6e-17 63.1 0.0 4.4e-17 62.3 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|435852230|ref|YP_007313816.1| - 1e-09 38.0 0.3 1.3e-08 34.4 0.1 2.2 1 1 1 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|435852230|ref|YP_007313816.1| - 2.2e-09 37.5 3.0 2e-08 34.3 1.0 2.4 2 1 0 2 2 1 1 AAA domain MipZ PF09140.11 gi|435852230|ref|YP_007313816.1| - 2.4e-07 30.3 0.0 3.3e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|435852230|ref|YP_007313816.1| - 1.2e-06 28.5 0.6 0.05 13.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain Fer4_NifH PF00142.18 gi|435852230|ref|YP_007313816.1| - 1.2e-06 28.1 0.5 0.00046 19.7 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.20 gi|435852230|ref|YP_007313816.1| - 4.3e-05 23.5 0.0 6.2e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase CLP1_P PF16575.5 gi|435852230|ref|YP_007313816.1| - 0.0004 20.2 0.0 0.00076 19.3 0.0 1.4 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 gi|435852230|ref|YP_007313816.1| - 0.00043 19.9 0.0 0.00087 18.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|435852230|ref|YP_007313816.1| - 0.00062 19.5 0.2 0.0014 18.3 0.2 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|435852230|ref|YP_007313816.1| - 0.0011 18.0 0.1 0.0023 16.9 0.1 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB RsgA_GTPase PF03193.16 gi|435852230|ref|YP_007313816.1| - 0.0021 18.0 1.3 0.0039 17.1 0.2 1.8 2 0 0 2 2 2 1 RsgA GTPase CBP_BcsQ PF06564.12 gi|435852230|ref|YP_007313816.1| - 0.0032 17.0 0.3 0.34 10.4 0.2 2.2 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ NB-ARC PF00931.22 gi|435852230|ref|YP_007313816.1| - 0.0075 15.5 0.1 0.011 14.9 0.1 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_30 PF13604.6 gi|435852230|ref|YP_007313816.1| - 0.0076 16.0 0.2 0.026 14.2 0.2 1.8 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.11 gi|435852230|ref|YP_007313816.1| - 0.008 15.5 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein IstB_IS21 PF01695.17 gi|435852230|ref|YP_007313816.1| - 0.0093 15.7 0.1 0.019 14.7 0.1 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein SR1P PF13790.6 gi|435852230|ref|YP_007313816.1| - 0.0095 16.0 0.1 0.018 15.2 0.1 1.4 1 0 0 1 1 1 1 SR1 protein Zeta_toxin PF06414.12 gi|435852230|ref|YP_007313816.1| - 0.014 14.7 0.1 0.021 14.1 0.1 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_16 PF13191.6 gi|435852230|ref|YP_007313816.1| - 0.018 15.4 0.0 0.038 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|435852230|ref|YP_007313816.1| - 0.022 14.7 0.1 0.05 13.5 0.1 1.6 1 0 0 1 1 1 0 NTPase PhoH PF02562.16 gi|435852230|ref|YP_007313816.1| - 0.039 13.4 0.2 0.069 12.6 0.2 1.3 1 0 0 1 1 1 0 PhoH-like protein RNA_helicase PF00910.22 gi|435852230|ref|YP_007313816.1| - 0.042 14.2 0.0 0.12 12.8 0.0 1.9 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 gi|435852230|ref|YP_007313816.1| - 0.042 14.0 0.0 0.065 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|435852230|ref|YP_007313816.1| - 0.047 13.6 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|435852230|ref|YP_007313816.1| - 0.089 13.1 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|435852230|ref|YP_007313816.1| - 0.1 13.1 0.0 0.18 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|435852230|ref|YP_007313816.1| - 0.2 11.1 0.0 0.29 10.5 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NACHT PF05729.12 gi|435852230|ref|YP_007313816.1| - 0.2 11.6 0.7 0.36 10.7 0.7 1.4 1 0 0 1 1 1 0 NACHT domain DUF134 PF02001.16 gi|435852231|ref|YP_007313817.1| - 6.9e-28 97.1 0.0 7.8e-28 96.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|435852231|ref|YP_007313817.1| - 0.00022 20.8 0.1 0.00031 20.4 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 gi|435852231|ref|YP_007313817.1| - 0.0014 18.6 0.3 0.0017 18.3 0.3 1.1 1 0 0 1 1 1 1 ECF sigma factor Sigma70_r4 PF04545.16 gi|435852231|ref|YP_007313817.1| - 0.0026 17.3 0.3 0.0045 16.5 0.3 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|435852231|ref|YP_007313817.1| - 0.0098 15.9 0.2 0.017 15.2 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|435852231|ref|YP_007313817.1| - 0.011 15.6 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_10 PF04967.12 gi|435852231|ref|YP_007313817.1| - 0.012 15.4 0.0 0.044 13.6 0.0 2.0 2 0 0 2 2 2 0 HTH DNA binding domain DUF4276 PF14103.6 gi|435852231|ref|YP_007313817.1| - 0.082 13.1 0.0 0.091 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4276) Radical_SAM PF04055.21 gi|435852232|ref|YP_007313818.1| - 4.4e-09 36.9 0.4 1.4e-08 35.3 0.1 1.8 1 1 1 2 2 2 1 Radical SAM superfamily Flavoprotein PF02441.19 gi|435852232|ref|YP_007313818.1| - 0.026 14.3 0.0 0.16 11.7 0.0 2.2 2 1 0 2 2 2 0 Flavoprotein Lactamase_B PF00753.27 gi|435852233|ref|YP_007313819.1| - 2.4e-13 50.6 0.7 2.8e-13 50.3 0.7 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|435852233|ref|YP_007313819.1| - 3.2e-10 39.9 0.0 4.2e-10 39.5 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|435852233|ref|YP_007313819.1| - 0.00054 19.4 0.1 0.001 18.5 0.0 1.4 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|435852233|ref|YP_007313819.1| - 0.0023 17.8 0.0 0.004 17.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Humanin PF15040.6 gi|435852233|ref|YP_007313819.1| - 0.4 10.2 1.3 28 4.2 0.2 3.1 3 0 0 3 3 3 0 Humanin family Hydantoinase_A PF01968.18 gi|435852234|ref|YP_007313820.1| - 2.2e-32 112.5 3.8 3e-32 112.1 0.5 2.3 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|435852234|ref|YP_007313820.1| - 1.1e-27 96.8 0.2 9.8e-23 80.8 0.0 3.4 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|435852234|ref|YP_007313820.1| - 8e-07 28.0 0.8 0.011 14.3 0.1 2.2 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.20 gi|435852234|ref|YP_007313820.1| - 1.3 8.5 3.6 10 5.5 3.6 2.4 2 1 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Nitro_FeMo-Co PF02579.17 gi|435852235|ref|YP_007313821.1| - 4.8e-23 81.3 0.0 5.5e-23 81.1 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.17 gi|435852236|ref|YP_007313822.1| - 2.8e-18 66.0 0.7 6.1e-18 64.9 0.0 1.7 2 0 0 2 2 2 1 Dinitrogenase iron-molybdenum cofactor CbiA PF01656.23 gi|435852237|ref|YP_007313823.1| - 1.8e-17 63.6 0.0 2.3e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|435852237|ref|YP_007313823.1| - 4.9e-17 62.2 0.2 4.3e-08 32.9 0.0 2.9 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|435852237|ref|YP_007313823.1| - 6.6e-12 44.7 15.1 9.4e-07 28.4 1.4 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|435852237|ref|YP_007313823.1| - 8.5e-10 38.3 16.1 1.4e-05 24.9 2.2 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain AAA_31 PF13614.6 gi|435852237|ref|YP_007313823.1| - 1.1e-09 38.5 0.2 0.00025 21.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_9 PF13187.6 gi|435852237|ref|YP_007313823.1| - 9.8e-07 28.9 9.7 6e-06 26.3 10.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435852237|ref|YP_007313823.1| - 3.8e-06 26.9 9.0 0.00082 19.4 0.4 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435852237|ref|YP_007313823.1| - 1.5e-05 25.8 9.7 0.0083 17.0 3.2 2.7 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|435852237|ref|YP_007313823.1| - 5.3e-05 23.3 6.5 5.3e-05 23.3 6.5 2.5 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435852237|ref|YP_007313823.1| - 0.00011 22.7 14.0 0.0074 16.9 1.5 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain AAA_26 PF13500.6 gi|435852237|ref|YP_007313823.1| - 0.00015 21.7 1.1 0.0056 16.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain Fer4_3 PF12798.7 gi|435852237|ref|YP_007313823.1| - 0.0011 19.8 20.8 0.063 14.2 3.2 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain ArsA_ATPase PF02374.15 gi|435852237|ref|YP_007313823.1| - 0.0025 17.0 0.4 0.0045 16.2 0.4 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_4 PF12800.7 gi|435852237|ref|YP_007313823.1| - 0.0025 18.2 18.6 0.055 14.0 3.1 3.4 3 0 0 3 3 2 2 4Fe-4S binding domain MipZ PF09140.11 gi|435852237|ref|YP_007313823.1| - 0.0047 16.2 0.0 0.0082 15.4 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|435852237|ref|YP_007313823.1| - 0.0047 16.4 0.1 1.3 8.4 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_2 PF12797.7 gi|435852237|ref|YP_007313823.1| - 0.0095 16.0 15.6 0.024 14.7 1.6 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|435852237|ref|YP_007313823.1| - 0.018 15.5 10.0 0.18 12.2 0.2 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain AAA_25 PF13481.6 gi|435852237|ref|YP_007313823.1| - 0.075 12.6 0.2 0.13 11.9 0.0 1.5 2 0 0 2 2 2 0 AAA domain Fer4_17 PF13534.6 gi|435852237|ref|YP_007313823.1| - 0.34 11.5 12.7 0.41 11.2 2.2 2.7 1 1 3 4 4 4 0 4Fe-4S dicluster domain CbiA PF01656.23 gi|435852238|ref|YP_007313824.1| - 1.7e-17 63.7 0.1 2.2e-17 63.3 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|435852238|ref|YP_007313824.1| - 9.3e-14 51.5 1.0 2.1e-06 27.4 0.2 2.5 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|435852238|ref|YP_007313824.1| - 1e-13 50.5 12.5 1.9e-07 30.6 1.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435852238|ref|YP_007313824.1| - 5.4e-10 39.7 3.5 0.00048 20.7 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|435852238|ref|YP_007313824.1| - 1.3e-09 38.2 0.1 0.00058 19.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_6 PF12837.7 gi|435852238|ref|YP_007313824.1| - 3.3e-08 33.3 12.7 0.00028 20.8 3.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435852238|ref|YP_007313824.1| - 8.8e-08 32.2 3.0 0.0013 18.8 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_NifH PF00142.18 gi|435852238|ref|YP_007313824.1| - 2e-07 30.8 3.3 0.0071 15.8 0.8 2.4 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_21 PF14697.6 gi|435852238|ref|YP_007313824.1| - 2.7e-06 27.4 12.0 1.3e-05 25.2 12.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain RsgA_GTPase PF03193.16 gi|435852238|ref|YP_007313824.1| - 4.3e-06 26.7 0.2 0.011 15.7 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase Fer4_16 PF13484.6 gi|435852238|ref|YP_007313824.1| - 6.2e-06 27.1 9.8 0.0011 19.8 1.1 2.9 2 1 1 3 3 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|435852238|ref|YP_007313824.1| - 1.7e-05 24.6 11.4 0.018 15.1 1.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435852238|ref|YP_007313824.1| - 3.8e-05 23.7 9.9 0.001 19.2 11.0 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain AAA_22 PF13401.6 gi|435852238|ref|YP_007313824.1| - 5.4e-05 23.5 0.0 0.0016 18.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain Fer4_17 PF13534.6 gi|435852238|ref|YP_007313824.1| - 6.2e-05 23.5 1.7 0.34 11.5 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain ArsA_ATPase PF02374.15 gi|435852238|ref|YP_007313824.1| - 0.00013 21.3 4.3 0.0043 16.3 0.2 3.0 2 1 0 3 3 3 1 Anion-transporting ATPase PhoH PF02562.16 gi|435852238|ref|YP_007313824.1| - 0.00019 20.9 0.8 0.29 10.6 0.6 2.2 2 0 0 2 2 2 2 PhoH-like protein Fer4_8 PF13183.6 gi|435852238|ref|YP_007313824.1| - 0.00022 21.6 1.2 0.49 10.9 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|435852238|ref|YP_007313824.1| - 0.00025 21.7 5.8 0.059 14.1 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain NB-ARC PF00931.22 gi|435852238|ref|YP_007313824.1| - 0.0006 19.1 0.5 0.81 8.8 0.2 2.2 2 0 0 2 2 2 2 NB-ARC domain AAA_24 PF13479.6 gi|435852238|ref|YP_007313824.1| - 0.00069 19.4 0.1 0.018 14.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|435852238|ref|YP_007313824.1| - 0.0013 19.3 1.1 0.018 15.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|435852238|ref|YP_007313824.1| - 0.0016 18.8 0.0 0.013 15.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain FTHFS PF01268.19 gi|435852238|ref|YP_007313824.1| - 0.0017 16.7 0.1 0.0029 15.9 0.1 1.3 1 0 0 1 1 1 1 Formate--tetrahydrofolate ligase AAA_30 PF13604.6 gi|435852238|ref|YP_007313824.1| - 0.0035 17.1 0.6 0.24 11.1 0.2 2.9 2 1 1 3 3 3 1 AAA domain ABC_tran PF00005.27 gi|435852238|ref|YP_007313824.1| - 0.017 15.7 0.0 0.14 12.7 0.0 2.2 2 0 0 2 2 2 0 ABC transporter IstB_IS21 PF01695.17 gi|435852238|ref|YP_007313824.1| - 0.021 14.5 0.1 2.1 8.0 0.1 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein Fer4_3 PF12798.7 gi|435852238|ref|YP_007313824.1| - 0.026 15.4 16.5 0.94 10.6 4.5 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain RuvB_N PF05496.12 gi|435852238|ref|YP_007313824.1| - 0.031 14.0 0.2 0.9 9.3 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_11 PF13086.6 gi|435852238|ref|YP_007313824.1| - 0.041 13.7 0.0 5.7 6.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|435852238|ref|YP_007313824.1| - 0.048 12.9 0.5 4.7 6.3 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ATPase PF06745.13 gi|435852238|ref|YP_007313824.1| - 0.053 12.9 0.6 0.24 10.7 0.2 2.1 2 0 0 2 2 2 0 KaiC AAA_29 PF13555.6 gi|435852238|ref|YP_007313824.1| - 0.062 13.1 0.2 0.4 10.5 0.4 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain GTP_EFTU PF00009.27 gi|435852238|ref|YP_007313824.1| - 0.068 12.7 1.0 0.98 8.9 0.1 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA PF00004.29 gi|435852238|ref|YP_007313824.1| - 0.075 13.5 0.9 2.2 8.7 0.0 2.6 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) Fer4_13 PF13370.6 gi|435852238|ref|YP_007313824.1| - 0.1 13.2 11.9 1.8 9.1 3.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I SRP54 PF00448.22 gi|435852238|ref|YP_007313824.1| - 0.1 12.3 0.1 1.8 8.1 0.3 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|435852238|ref|YP_007313824.1| - 0.11 12.0 0.4 0.7 9.4 0.3 2.1 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|435852238|ref|YP_007313824.1| - 0.12 11.4 0.4 0.41 9.7 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein Aldo_ket_red PF00248.21 gi|435852238|ref|YP_007313824.1| - 0.17 11.1 0.0 0.27 10.4 0.0 1.2 1 0 0 1 1 1 0 Aldo/keto reductase family AAA_13 PF13166.6 gi|435852238|ref|YP_007313824.1| - 0.22 10.1 0.0 0.32 9.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|435852238|ref|YP_007313824.1| - 0.23 11.9 1.0 0.39 11.2 1.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|435852238|ref|YP_007313824.1| - 0.24 11.3 0.3 0.58 10.1 0.1 1.7 2 0 0 2 2 1 0 NACHT domain Fer4_4 PF12800.7 gi|435852238|ref|YP_007313824.1| - 0.47 11.1 11.9 0.59 10.8 1.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_28 PF13521.6 gi|435852238|ref|YP_007313824.1| - 2 8.6 3.6 0.58 10.4 0.4 1.7 2 0 0 2 2 1 0 AAA domain Fer4_22 PF17179.4 gi|435852238|ref|YP_007313824.1| - 3.4 8.6 11.6 3.6 8.5 2.0 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF3894 PF13033.6 gi|435852241|ref|YP_007313827.1| - 0.19 11.9 3.8 0.16 12.1 2.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3894) Rhodanese PF00581.20 gi|435852242|ref|YP_007313828.1| - 3.5e-27 95.0 0.0 8.5e-16 58.4 0.0 2.7 2 0 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.27 gi|435852242|ref|YP_007313828.1| - 1.8e-14 54.2 0.6 1.7e-13 51.1 0.6 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|435852242|ref|YP_007313828.1| - 0.0067 16.0 0.1 0.035 13.6 0.1 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Fe_dep_repr_C PF02742.15 gi|435852243|ref|YP_007313829.1| - 3.6e-18 65.4 0.1 6.2e-18 64.6 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|435852243|ref|YP_007313829.1| - 7.2e-13 48.5 0.1 1.1e-12 48.0 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|435852243|ref|YP_007313829.1| - 3.2e-07 30.1 0.0 7e-07 29.0 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|435852243|ref|YP_007313829.1| - 0.00022 21.1 0.0 0.0005 19.9 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|435852243|ref|YP_007313829.1| - 0.00034 20.4 0.2 0.00071 19.4 0.1 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|435852243|ref|YP_007313829.1| - 0.00067 19.5 0.0 0.0018 18.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|435852243|ref|YP_007313829.1| - 0.0027 18.0 0.0 0.005 17.2 0.0 1.6 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.12 gi|435852243|ref|YP_007313829.1| - 0.0029 17.5 0.1 0.012 15.5 0.0 2.0 2 0 0 2 2 2 1 HTH domain HTH_27 PF13463.6 gi|435852243|ref|YP_007313829.1| - 0.004 17.6 0.1 0.006 17.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|435852243|ref|YP_007313829.1| - 0.01 15.8 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|435852243|ref|YP_007313829.1| - 0.011 15.5 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MEKHLA PF08670.11 gi|435852243|ref|YP_007313829.1| - 0.052 13.4 0.0 0.071 13.0 0.0 1.2 1 0 0 1 1 1 0 MEKHLA domain HTH_24 PF13412.6 gi|435852243|ref|YP_007313829.1| - 0.078 12.5 0.0 0.24 11.0 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Rio2_N PF09202.11 gi|435852243|ref|YP_007313829.1| - 0.081 13.2 0.1 0.27 11.5 0.0 1.9 2 0 0 2 2 2 0 Rio2, N-terminal Topoisom_bac PF01131.20 gi|435852243|ref|YP_007313829.1| - 0.097 11.7 0.0 0.12 11.4 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase DUF2100 PF09873.9 gi|435852243|ref|YP_007313829.1| - 0.12 12.3 0.0 0.14 12.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2100) TFIIE_alpha PF02002.17 gi|435852243|ref|YP_007313829.1| - 0.15 12.0 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_micro PF17007.5 gi|435852243|ref|YP_007313829.1| - 0.19 10.5 0.0 0.25 10.1 0.0 1.1 1 0 0 1 1 1 0 HTH-like ZnuA PF01297.17 gi|435852244|ref|YP_007313830.1| - 1.1e-65 221.6 0.8 1.3e-65 221.3 0.8 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic DUF4223 PF13978.6 gi|435852244|ref|YP_007313830.1| - 0.0074 16.2 0.4 0.019 14.9 0.4 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF4223) CoA_binding_2 PF13380.6 gi|435852244|ref|YP_007313830.1| - 0.04 14.4 0.1 1.7 9.2 0.0 2.4 2 0 0 2 2 2 0 CoA binding domain Hydrolase PF00702.26 gi|435852244|ref|YP_007313830.1| - 0.043 14.1 0.0 0.068 13.4 0.0 1.3 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase FAD_binding_4 PF01565.23 gi|435852244|ref|YP_007313830.1| - 0.079 12.7 0.0 0.86 9.3 0.0 2.2 2 0 0 2 2 2 0 FAD binding domain ABC_tran PF00005.27 gi|435852245|ref|YP_007313831.1| - 6.9e-31 107.6 0.0 1.1e-30 107.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435852245|ref|YP_007313831.1| - 1.7e-12 47.8 3.6 3e-06 27.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|435852245|ref|YP_007313831.1| - 1.4e-06 28.0 0.9 7.7e-06 25.5 0.9 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|435852245|ref|YP_007313831.1| - 0.00058 19.7 0.0 0.014 15.1 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|435852245|ref|YP_007313831.1| - 0.0006 19.5 0.3 0.0011 18.7 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|435852245|ref|YP_007313831.1| - 0.0045 17.5 1.5 0.0088 16.6 1.6 1.7 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|435852245|ref|YP_007313831.1| - 0.015 14.9 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|435852245|ref|YP_007313831.1| - 0.033 13.9 0.0 0.32 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|435852245|ref|YP_007313831.1| - 0.048 13.6 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain IstB_IS21 PF01695.17 gi|435852245|ref|YP_007313831.1| - 0.052 13.3 0.6 4.4 7.0 0.1 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AGT PF11440.8 gi|435852245|ref|YP_007313831.1| - 0.11 11.5 0.1 0.16 10.9 0.1 1.2 1 0 0 1 1 1 0 DNA alpha-glucosyltransferase T2SSE PF00437.20 gi|435852245|ref|YP_007313831.1| - 0.13 11.3 0.0 0.23 10.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.6 gi|435852245|ref|YP_007313831.1| - 0.15 12.4 0.6 1.8 8.8 0.1 2.2 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|435852245|ref|YP_007313831.1| - 0.15 12.2 0.3 0.26 11.4 0.3 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|435852245|ref|YP_007313831.1| - 0.15 12.4 0.0 0.22 11.9 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain CPSase_L_D3 PF02787.19 gi|435852245|ref|YP_007313831.1| - 0.17 12.2 0.0 0.31 11.4 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ABC-3 PF00950.17 gi|435852246|ref|YP_007313832.1| - 3.3e-85 285.7 30.4 3.7e-85 285.5 30.4 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|435852246|ref|YP_007313832.1| - 4.8e-12 45.5 29.8 9.3e-12 44.6 29.8 1.5 1 1 0 1 1 1 1 FecCD transport family DUF2427 PF10348.9 gi|435852246|ref|YP_007313832.1| - 0.022 14.5 0.1 0.022 14.5 0.1 3.1 3 1 0 3 3 3 0 Domain of unknown function (DUF2427) Multi_Drug_Res PF00893.19 gi|435852247|ref|YP_007313833.1| - 3.6e-29 101.3 10.1 4.9e-29 100.8 10.1 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 gi|435852247|ref|YP_007313833.1| - 3.1e-05 24.2 11.2 3.8e-05 23.9 11.2 1.2 1 0 0 1 1 1 1 EamA-like transporter family TMEM234 PF10639.9 gi|435852247|ref|YP_007313833.1| - 0.04 13.9 3.0 0.051 13.6 2.9 1.2 1 1 0 1 1 1 0 Putative transmembrane family 234 TMEM144 PF07857.12 gi|435852247|ref|YP_007313833.1| - 0.22 10.5 10.4 0.32 9.9 10.4 1.4 1 1 0 1 1 1 0 Transmembrane family, TMEM144 of transporters SLATT_6 PF18169.1 gi|435852247|ref|YP_007313833.1| - 1.1 8.8 4.5 1.3 8.6 4.3 1.4 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 6 DUF2207 PF09972.9 gi|435852248|ref|YP_007313834.1| - 6.2e-105 351.8 2.6 7.9e-105 351.4 2.6 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) DUF5355 PF17306.2 gi|435852248|ref|YP_007313834.1| - 0.099 11.7 0.1 0.36 9.8 0.1 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5355) LemA PF04011.12 gi|435852249|ref|YP_007313835.1| - 5.4e-63 211.3 5.3 6.4e-63 211.1 5.3 1.1 1 0 0 1 1 1 1 LemA family DUF608 PF04685.13 gi|435852249|ref|YP_007313835.1| - 0.0059 15.8 0.1 0.0071 15.5 0.1 1.0 1 0 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region DUF327 PF03885.13 gi|435852249|ref|YP_007313835.1| - 0.019 14.9 1.3 0.026 14.5 1.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF327) MFS_1 PF07690.16 gi|435852250|ref|YP_007313836.1| - 7.7e-16 58.0 60.1 3.9e-11 42.5 48.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|435852250|ref|YP_007313836.1| - 3.5e-07 29.5 25.6 4.4e-06 25.8 12.1 3.2 1 1 1 3 3 3 2 Sugar (and other) transporter DUF2530 PF10745.9 gi|435852250|ref|YP_007313836.1| - 1.4 9.2 10.3 0.48 10.7 0.9 3.8 3 2 1 4 4 4 0 Protein of unknown function (DUF2530) MazG PF03819.17 gi|435852251|ref|YP_007313837.1| - 0.034 14.3 1.0 0.28 11.4 1.0 2.0 1 1 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain DUF5327 PF17261.2 gi|435852251|ref|YP_007313837.1| - 0.068 13.9 0.0 0.1 13.4 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5327) PsiE PF06146.12 gi|435852252|ref|YP_007313838.1| - 2e-13 50.5 7.1 2e-13 50.5 7.1 1.7 2 0 0 2 2 2 1 Phosphate-starvation-inducible E EamA PF00892.20 gi|435852254|ref|YP_007313840.1| - 5.5e-30 104.3 41.2 1.9e-15 57.3 17.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family FAM70 PF14967.6 gi|435852254|ref|YP_007313840.1| - 0.96 8.9 4.9 0.56 9.6 0.3 2.3 2 0 0 2 2 2 0 FAM70 protein TPT PF03151.16 gi|435852254|ref|YP_007313840.1| - 0.98 8.7 18.3 0.16 11.3 12.9 1.9 1 1 1 2 2 2 0 Triose-phosphate Transporter family FYVE PF01363.21 gi|435852255|ref|YP_007313841.1| - 0.026 14.6 6.7 0.03 14.5 2.8 2.1 2 0 0 2 2 2 0 FYVE zinc finger zinc_ribbon_4 PF13717.6 gi|435852255|ref|YP_007313841.1| - 0.041 13.8 5.6 1.6 8.7 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|435852255|ref|YP_007313841.1| - 0.58 11.1 7.3 3.2 8.9 3.4 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger DUF2196 PF09962.9 gi|435852256|ref|YP_007313842.1| - 4.8e-28 96.9 4.9 5.3e-28 96.8 4.9 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) LigB PF02900.18 gi|435852257|ref|YP_007313843.1| - 4e-29 101.5 0.0 4.7e-29 101.3 0.0 1.1 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase TPR_12 PF13424.6 gi|435852258|ref|YP_007313844.1| - 1.8e-07 31.4 8.6 0.00027 21.1 1.7 4.4 2 1 2 4 4 4 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|435852258|ref|YP_007313844.1| - 2.4e-06 27.9 5.1 0.41 11.6 0.4 4.7 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|435852258|ref|YP_007313844.1| - 5.5e-05 23.0 17.5 0.048 13.8 0.9 4.8 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|435852258|ref|YP_007313844.1| - 9.1e-05 22.1 18.6 1.6 8.7 0.2 6.3 4 2 0 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|435852258|ref|YP_007313844.1| - 0.0003 20.8 9.0 0.71 10.2 0.2 5.4 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|435852258|ref|YP_007313844.1| - 0.00036 20.3 8.8 0.99 9.4 0.0 4.8 4 0 0 4 4 4 2 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|435852258|ref|YP_007313844.1| - 0.0016 18.2 2.2 0.0028 17.4 1.1 1.9 2 0 0 2 2 2 1 Plant specific mitochondrial import receptor subunit TOM20 SNAP PF14938.6 gi|435852258|ref|YP_007313844.1| - 0.0028 17.1 9.2 0.042 13.3 8.5 2.4 1 1 1 2 2 2 2 Soluble NSF attachment protein, SNAP MIT PF04212.18 gi|435852258|ref|YP_007313844.1| - 0.0089 16.1 13.2 0.79 9.8 0.1 4.5 4 0 0 4 4 4 2 MIT (microtubule interacting and transport) domain TPR_11 PF13414.6 gi|435852258|ref|YP_007313844.1| - 0.025 14.3 11.9 0.86 9.3 0.2 4.2 4 0 0 4 4 4 0 TPR repeat DUF3369 PF11849.8 gi|435852258|ref|YP_007313844.1| - 0.056 13.6 0.2 7.3 6.8 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3369) PPR PF01535.20 gi|435852258|ref|YP_007313844.1| - 0.12 12.7 0.3 2 8.9 0.0 3.2 3 0 0 3 3 2 0 PPR repeat TPR_16 PF13432.6 gi|435852258|ref|YP_007313844.1| - 0.19 12.4 7.4 19 6.0 1.1 3.8 2 1 2 4 4 4 0 Tetratricopeptide repeat DUF2225 PF09986.9 gi|435852258|ref|YP_007313844.1| - 0.55 9.9 7.0 8.4 6.0 2.6 2.7 1 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) Thx PF17070.5 gi|435852258|ref|YP_007313844.1| - 2.8 8.2 5.1 15 5.8 0.3 2.4 2 0 0 2 2 2 0 30S ribosomal protein Thx Lactamase_B PF00753.27 gi|435852259|ref|YP_007313845.1| - 1e-09 38.7 0.1 9.6e-08 32.3 0.0 2.2 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|435852259|ref|YP_007313845.1| - 4.8e-05 23.0 0.0 8.4e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|435852259|ref|YP_007313845.1| - 0.015 14.7 0.0 0.027 13.9 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain MMR_HSR1 PF01926.23 gi|435852260|ref|YP_007313846.1| - 3.9e-15 55.9 0.6 1e-11 44.9 0.0 2.4 2 0 0 2 2 2 2 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|435852260|ref|YP_007313846.1| - 5e-09 36.3 0.1 7.2e-09 35.8 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase FeoB_N PF02421.18 gi|435852260|ref|YP_007313846.1| - 8.3e-09 35.2 2.5 0.0017 17.9 0.2 2.5 2 1 0 2 2 2 2 Ferrous iron transport protein B AIG1 PF04548.16 gi|435852260|ref|YP_007313846.1| - 1.9e-05 24.1 0.0 3.9e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 AIG1 family GTP_EFTU PF00009.27 gi|435852260|ref|YP_007313846.1| - 2.5e-05 23.9 1.9 0.0077 15.8 0.4 2.4 1 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|435852260|ref|YP_007313846.1| - 0.00093 19.3 1.3 0.95 9.5 0.2 3.2 2 1 1 3 3 3 1 Dynamin family MMR_HSR1_Xtn PF16897.5 gi|435852260|ref|YP_007313846.1| - 0.0051 16.8 0.1 0.0095 15.9 0.1 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain cobW PF02492.19 gi|435852260|ref|YP_007313846.1| - 0.12 12.0 2.3 0.15 11.6 0.5 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.17 gi|435852260|ref|YP_007313846.1| - 0.15 11.8 0.0 0.32 10.7 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF2238 PF09997.9 gi|435852261|ref|YP_007313847.1| - 1.9e-05 24.5 22.7 3.2e-05 23.7 7.0 4.3 2 2 0 2 2 2 1 Predicted membrane protein (DUF2238) MMPL PF03176.15 gi|435852262|ref|YP_007313848.1| - 5.8e-60 203.0 12.6 6.4e-31 107.5 1.7 2.2 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|435852262|ref|YP_007313848.1| - 2e-11 43.9 11.1 9.8e-09 35.2 1.4 3.0 3 1 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.19 gi|435852262|ref|YP_007313848.1| - 3e-11 41.8 19.2 3.1e-06 25.2 1.8 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Patched PF02460.18 gi|435852262|ref|YP_007313848.1| - 4.3e-11 41.7 11.8 8.5e-06 24.1 2.4 2.5 2 0 0 2 2 2 2 Patched family SecD_SecF PF02355.16 gi|435852262|ref|YP_007313848.1| - 1.6e-07 30.9 8.7 1.6e-07 30.9 8.7 3.0 2 1 0 2 2 2 1 Protein export membrane protein CD34_antigen PF06365.12 gi|435852262|ref|YP_007313848.1| - 0.34 10.5 0.0 0.34 10.5 0.0 2.8 4 0 0 4 4 4 0 CD34/Podocalyxin family NPCBM_assoc PF10633.9 gi|435852263|ref|YP_007313849.1| - 2.5e-05 24.5 0.0 0.0076 16.5 0.0 2.5 2 0 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|435852263|ref|YP_007313849.1| - 0.00037 20.7 0.7 0.036 14.3 0.1 2.9 2 1 0 2 2 2 1 CARDB PHTB1_C PF14728.6 gi|435852263|ref|YP_007313849.1| - 0.039 13.0 0.0 0.53 9.3 0.0 2.0 2 0 0 2 2 2 0 PTHB1 C-terminus DUF11 PF01345.18 gi|435852263|ref|YP_007313849.1| - 0.049 13.9 0.5 0.57 10.5 0.1 2.6 2 1 0 2 2 2 0 Domain of unknown function DUF11 ASH PF15780.5 gi|435852263|ref|YP_007313849.1| - 0.092 13.0 0.0 0.31 11.3 0.0 1.8 1 1 1 2 2 2 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin DUF1081 PF06448.11 gi|435852263|ref|YP_007313849.1| - 0.12 12.8 0.6 2.9 8.3 0.1 2.6 3 0 0 3 3 3 0 Domain of Unknown Function (DUF1081) TrmB PF01978.19 gi|435852264|ref|YP_007313850.1| - 1.2e-17 63.5 0.0 2.6e-17 62.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|435852264|ref|YP_007313850.1| - 4.2e-05 23.3 0.1 0.00014 21.6 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|435852264|ref|YP_007313850.1| - 5.3e-05 23.0 0.0 0.00011 22.0 0.0 1.5 1 0 0 1 1 1 1 MarR family Regulator_TrmB PF11495.8 gi|435852264|ref|YP_007313850.1| - 0.00018 20.8 0.1 0.00043 19.5 0.1 1.7 1 1 0 1 1 1 1 Archaeal transcriptional regulator TrmB DUF5004 PF16395.5 gi|435852264|ref|YP_007313850.1| - 0.0076 16.3 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5004) Penicillinase_R PF03965.16 gi|435852264|ref|YP_007313850.1| - 0.0079 16.5 0.0 0.02 15.2 0.0 1.6 1 1 0 1 1 1 1 Penicillinase repressor MarR PF01047.22 gi|435852264|ref|YP_007313850.1| - 0.0096 15.8 0.0 0.021 14.7 0.0 1.6 1 0 0 1 1 1 1 MarR family DUF742 PF05331.11 gi|435852264|ref|YP_007313850.1| - 0.018 14.9 0.0 0.033 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF742) Rrf2 PF02082.20 gi|435852264|ref|YP_007313850.1| - 0.036 14.4 0.0 0.1 12.9 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator UPF0086 PF01868.16 gi|435852264|ref|YP_007313850.1| - 0.13 12.2 0.0 0.39 10.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function UPF0086 Rsm22 PF09243.10 gi|435852265|ref|YP_007313851.1| - 4.7e-10 39.2 0.0 9.6e-10 38.2 0.0 1.5 1 1 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_31 PF13847.6 gi|435852265|ref|YP_007313851.1| - 1.1e-07 31.7 0.0 2.3e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|435852265|ref|YP_007313851.1| - 1.6e-06 28.0 0.0 3.4e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|435852265|ref|YP_007313851.1| - 0.0014 18.2 0.0 0.0025 17.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|435852265|ref|YP_007313851.1| - 0.0018 19.0 0.0 0.0042 17.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435852265|ref|YP_007313851.1| - 0.0018 18.9 0.0 0.0061 17.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain GidB PF02527.15 gi|435852265|ref|YP_007313851.1| - 0.038 13.3 0.0 0.6 9.4 0.0 2.4 2 0 0 2 2 2 0 rRNA small subunit methyltransferase G DUF496 PF04363.12 gi|435852265|ref|YP_007313851.1| - 0.16 12.0 0.2 0.16 12.0 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF496) NPCBM_assoc PF10633.9 gi|435852266|ref|YP_007313852.1| - 1e-08 35.3 5.0 0.0034 17.6 1.3 4.1 3 1 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF916 PF06030.12 gi|435852266|ref|YP_007313852.1| - 1.8e-08 34.5 6.5 0.0082 16.2 0.1 5.2 4 2 1 5 5 5 2 Bacterial protein of unknown function (DUF916) MG2 PF01835.19 gi|435852266|ref|YP_007313852.1| - 0.00094 19.6 0.2 5.6 7.5 0.0 4.0 3 1 1 4 4 4 1 MG2 domain DUF11 PF01345.18 gi|435852266|ref|YP_007313852.1| - 0.0014 18.9 4.8 1.6 9.1 0.4 4.3 3 2 0 3 3 3 1 Domain of unknown function DUF11 fn3_5 PF06280.12 gi|435852266|ref|YP_007313852.1| - 0.019 15.6 6.9 3.3 8.4 0.4 4.2 3 2 1 4 4 4 0 Fn3-like domain DUF1573 PF07610.11 gi|435852266|ref|YP_007313852.1| - 0.04 14.0 0.2 32 4.6 0.0 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1573) BsuPI PF12690.7 gi|435852266|ref|YP_007313852.1| - 0.052 13.6 0.3 8.8 6.4 0.0 3.8 4 0 0 4 4 4 0 Intracellular proteinase inhibitor N_BRCA1_IG PF16158.5 gi|435852266|ref|YP_007313852.1| - 0.053 14.2 0.2 3.8 8.3 0.0 3.3 2 2 0 2 2 2 0 Ig-like domain from next to BRCA1 gene DUF4352 PF11611.8 gi|435852266|ref|YP_007313852.1| - 0.065 13.5 2.8 6.2 7.1 0.1 3.8 4 1 0 4 4 4 0 Domain of unknown function (DUF4352) bMG10 PF17973.1 gi|435852266|ref|YP_007313852.1| - 0.066 13.4 2.1 24 5.1 0.0 3.6 4 0 0 4 4 4 0 Bacterial Alpha-2-macroglobulin MG10 domain Fn3-like PF14310.6 gi|435852266|ref|YP_007313852.1| - 0.088 12.9 0.2 4.9 7.3 0.0 3.2 3 0 0 3 3 3 0 Fibronectin type III-like domain SoxY PF13501.6 gi|435852266|ref|YP_007313852.1| - 0.14 12.3 0.5 0.6 10.3 0.1 2.3 2 1 0 2 2 2 0 Sulfur oxidation protein SoxY BACON PF13004.7 gi|435852266|ref|YP_007313852.1| - 1.5 8.9 0.0 1.5 8.9 0.0 3.6 3 1 1 4 4 4 0 Putative binding domain, N-terminal SprB PF13573.6 gi|435852266|ref|YP_007313852.1| - 3 7.7 8.0 0.92 9.3 0.1 3.9 4 0 0 4 4 4 0 SprB repeat Dala_Dala_lig_C PF07478.13 gi|435852267|ref|YP_007313853.1| - 4.7e-26 91.6 0.0 8.2e-26 90.8 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Methyltransf_25 PF13649.6 gi|435852267|ref|YP_007313853.1| - 5.5e-20 71.9 0.0 1.5e-19 70.5 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435852267|ref|YP_007313853.1| - 5.7e-17 62.2 0.0 1.3e-16 61.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|435852267|ref|YP_007313853.1| - 1e-13 51.4 0.0 1.7e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|435852267|ref|YP_007313853.1| - 9.1e-12 44.8 0.0 3.7e-10 39.5 0.0 2.1 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|435852267|ref|YP_007313853.1| - 2.3e-09 37.3 0.1 6.7e-09 35.8 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain ATPgrasp_Ter PF15632.6 gi|435852267|ref|YP_007313853.1| - 1e-05 25.3 0.0 0.018 14.7 0.0 3.2 3 0 0 3 3 3 1 ATP-grasp in the biosynthetic pathway with Ter operon MTS PF05175.14 gi|435852267|ref|YP_007313853.1| - 1.4e-05 24.8 0.0 2.7e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|435852267|ref|YP_007313853.1| - 2.1e-05 24.0 0.0 3.6e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_9 PF08003.11 gi|435852267|ref|YP_007313853.1| - 0.00028 19.9 0.0 0.008 15.1 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) PCMT PF01135.19 gi|435852267|ref|YP_007313853.1| - 0.0042 16.9 0.0 0.012 15.4 0.0 1.7 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|435852267|ref|YP_007313853.1| - 0.012 14.9 0.0 0.02 14.2 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase ATP-grasp_4 PF13535.6 gi|435852267|ref|YP_007313853.1| - 0.018 14.6 0.0 0.057 13.0 0.0 1.8 2 0 0 2 2 2 0 ATP-grasp domain Methyltransf_4 PF02390.17 gi|435852267|ref|YP_007313853.1| - 0.025 14.0 0.0 1.1 8.7 0.0 2.3 2 0 0 2 2 2 0 Putative methyltransferase MetW PF07021.12 gi|435852267|ref|YP_007313853.1| - 0.028 14.0 0.0 0.056 13.0 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Cons_hypoth95 PF03602.15 gi|435852267|ref|YP_007313853.1| - 0.032 13.9 0.0 0.062 12.9 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 CPSase_L_D2 PF02786.17 gi|435852267|ref|YP_007313853.1| - 0.11 11.9 0.0 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Methyltransf_2 PF00891.18 gi|435852267|ref|YP_007313853.1| - 0.12 11.7 0.0 0.26 10.6 0.0 1.5 1 0 0 1 1 1 0 O-methyltransferase domain CheR PF01739.18 gi|435852267|ref|YP_007313853.1| - 0.15 11.5 0.0 0.28 10.7 0.0 1.4 1 0 0 1 1 1 0 CheR methyltransferase, SAM binding domain AAA PF00004.29 gi|435852268|ref|YP_007313854.1| - 5.5e-05 23.6 1.4 0.00049 20.5 0.0 3.0 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|435852268|ref|YP_007313854.1| - 0.00049 20.1 0.4 0.00049 20.1 0.4 3.9 5 0 0 5 5 5 1 AAA domain AAA_16 PF13191.6 gi|435852268|ref|YP_007313854.1| - 0.00075 19.9 0.0 0.0019 18.6 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|435852268|ref|YP_007313854.1| - 0.0013 18.7 0.2 0.0038 17.2 0.2 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|435852268|ref|YP_007313854.1| - 0.0025 18.1 0.5 0.083 13.2 0.5 3.0 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|435852268|ref|YP_007313854.1| - 0.005 16.1 0.7 0.069 12.3 0.7 2.5 1 1 0 1 1 1 1 NB-ARC domain TIP49 PF06068.13 gi|435852268|ref|YP_007313854.1| - 0.028 13.7 0.3 0.075 12.2 0.0 1.9 2 0 0 2 2 2 0 TIP49 P-loop domain T2SSE PF00437.20 gi|435852268|ref|YP_007313854.1| - 0.038 13.0 0.1 0.076 12.1 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_7 PF12775.7 gi|435852268|ref|YP_007313854.1| - 0.069 12.7 0.0 0.16 11.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_18 PF13238.6 gi|435852268|ref|YP_007313854.1| - 0.14 12.7 1.3 2 9.0 0.0 3.3 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.15 gi|435852268|ref|YP_007313854.1| - 0.16 11.8 0.8 2.2 8.2 0.1 2.6 1 1 1 2 2 2 0 NTPase UbiD PF01977.16 gi|435852269|ref|YP_007313855.1| - 5.2e-108 361.5 2.6 5.9e-108 361.3 2.6 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF521 PF04412.13 gi|435852270|ref|YP_007313856.1| - 1.7e-157 524.3 0.1 1.9e-157 524.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF126 PF01989.16 gi|435852271|ref|YP_007313857.1| - 6.1e-36 122.1 0.2 1e-35 121.4 0.2 1.4 1 0 0 1 1 1 1 Aconitase X swivel domain Radical_SAM PF04055.21 gi|435852272|ref|YP_007313858.1| - 2.5e-25 89.8 0.2 2.2e-24 86.7 0.1 2.0 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|435852272|ref|YP_007313858.1| - 1.8e-09 37.7 0.0 4.6e-09 36.4 0.0 1.7 2 0 0 2 2 2 1 B12 binding domain Fer4_14 PF13394.6 gi|435852272|ref|YP_007313858.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain CxxCxxCC PF03692.15 gi|435852273|ref|YP_007313859.1| - 8.1e-13 48.9 1.1 1.6e-12 47.9 0.6 1.8 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF5350 PF17299.2 gi|435852274|ref|YP_007313860.1| - 5.9e-27 93.9 5.8 6.3e-27 93.8 5.8 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5350) YoaP PF14268.6 gi|435852274|ref|YP_007313860.1| - 0.084 12.4 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 YoaP-like Glyco_hydro_61 PF03443.14 gi|435852274|ref|YP_007313860.1| - 0.13 12.2 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 61 Cpn60_TCP1 PF00118.24 gi|435852275|ref|YP_007313861.1| - 5.5e-184 612.4 22.6 6.3e-184 612.2 22.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family TrwC PF08751.11 gi|435852275|ref|YP_007313861.1| - 0.091 12.3 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 TrwC relaxase AAA_16 PF13191.6 gi|435852276|ref|YP_007313862.1| - 3.5e-13 50.3 0.1 8.5e-11 42.5 0.0 3.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|435852276|ref|YP_007313862.1| - 1.8e-08 34.8 0.0 4.4e-08 33.5 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA PF00004.29 gi|435852276|ref|YP_007313862.1| - 4.5e-08 33.6 0.0 1.2e-07 32.2 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.11 gi|435852276|ref|YP_007313862.1| - 3.7e-06 26.8 0.1 2.8e-05 24.0 0.0 2.5 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_7 PF12775.7 gi|435852276|ref|YP_007313862.1| - 5.4e-06 26.1 0.0 0.00025 20.6 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_11 PF13086.6 gi|435852276|ref|YP_007313862.1| - 2.1e-05 24.5 0.0 3.4e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|435852276|ref|YP_007313862.1| - 3.3e-05 23.9 0.2 0.00096 19.1 0.1 2.8 3 0 0 3 3 3 1 NTPase ATPase_2 PF01637.18 gi|435852276|ref|YP_007313862.1| - 9.9e-05 22.4 0.0 0.00021 21.3 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|435852276|ref|YP_007313862.1| - 0.00021 20.6 0.0 0.00035 19.9 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_19 PF13245.6 gi|435852276|ref|YP_007313862.1| - 0.00081 19.8 0.0 0.0023 18.3 0.0 1.8 2 0 0 2 2 1 1 AAA domain Sigma54_activat PF00158.26 gi|435852276|ref|YP_007313862.1| - 0.00084 19.1 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain RecA PF00154.21 gi|435852276|ref|YP_007313862.1| - 0.00087 18.8 0.0 0.0013 18.2 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein T2SSE PF00437.20 gi|435852276|ref|YP_007313862.1| - 0.0011 18.1 0.0 0.0018 17.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein NACHT PF05729.12 gi|435852276|ref|YP_007313862.1| - 0.0013 18.6 0.0 0.0023 17.8 0.0 1.4 1 0 0 1 1 1 1 NACHT domain DUF2075 PF09848.9 gi|435852276|ref|YP_007313862.1| - 0.0013 18.0 0.0 0.0018 17.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|435852276|ref|YP_007313862.1| - 0.0017 18.1 0.1 0.005 16.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|435852276|ref|YP_007313862.1| - 0.0022 17.3 0.1 0.0047 16.2 0.0 1.6 2 0 0 2 2 1 1 Zeta toxin AAA_14 PF13173.6 gi|435852276|ref|YP_007313862.1| - 0.0033 17.5 0.0 0.053 13.6 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|435852276|ref|YP_007313862.1| - 0.0034 17.2 0.0 0.01 15.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain KAP_NTPase PF07693.14 gi|435852276|ref|YP_007313862.1| - 0.004 16.4 0.1 0.019 14.2 0.0 1.8 1 1 1 2 2 2 1 KAP family P-loop domain Rad17 PF03215.15 gi|435852276|ref|YP_007313862.1| - 0.006 16.5 0.1 0.014 15.3 0.1 1.8 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_35 PF14516.6 gi|435852276|ref|YP_007313862.1| - 0.0083 15.0 0.0 0.79 8.5 0.0 2.3 2 0 0 2 2 2 1 AAA-like domain DUF815 PF05673.13 gi|435852276|ref|YP_007313862.1| - 0.0098 15.1 0.0 0.035 13.3 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Fer4_NifH PF00142.18 gi|435852276|ref|YP_007313862.1| - 0.011 15.2 0.0 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family IstB_IS21 PF01695.17 gi|435852276|ref|YP_007313862.1| - 0.012 15.3 0.0 0.71 9.6 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein SRP54 PF00448.22 gi|435852276|ref|YP_007313862.1| - 0.013 15.1 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TniB PF05621.11 gi|435852276|ref|YP_007313862.1| - 0.016 14.6 0.0 0.032 13.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial TniB protein AAA_6 PF12774.7 gi|435852276|ref|YP_007313862.1| - 0.016 14.2 0.0 0.028 13.4 0.0 1.3 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region RNA_helicase PF00910.22 gi|435852276|ref|YP_007313862.1| - 0.017 15.5 0.0 0.039 14.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase RuvB_N PF05496.12 gi|435852276|ref|YP_007313862.1| - 0.017 14.9 0.0 0.035 13.9 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain TIP49_C PF17856.1 gi|435852276|ref|YP_007313862.1| - 0.018 15.2 0.0 0.042 14.0 0.0 1.6 1 0 0 1 1 1 0 TIP49 AAA-lid domain AAA_18 PF13238.6 gi|435852276|ref|YP_007313862.1| - 0.019 15.5 0.0 0.035 14.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|435852276|ref|YP_007313862.1| - 0.02 14.6 0.0 0.035 13.9 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_33 PF13671.6 gi|435852276|ref|YP_007313862.1| - 0.03 14.5 0.0 0.062 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|435852276|ref|YP_007313862.1| - 0.038 14.0 0.0 0.054 13.6 0.0 1.2 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_32 PF13654.6 gi|435852276|ref|YP_007313862.1| - 0.04 12.7 0.0 1 8.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|435852276|ref|YP_007313862.1| - 0.055 12.4 0.0 0.12 11.3 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ResIII PF04851.15 gi|435852276|ref|YP_007313862.1| - 0.056 13.5 0.0 0.091 12.8 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_28 PF13521.6 gi|435852276|ref|YP_007313862.1| - 0.061 13.6 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|435852276|ref|YP_007313862.1| - 0.066 12.8 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Thymidylate_kin PF02223.17 gi|435852276|ref|YP_007313862.1| - 0.08 12.6 0.1 0.49 10.1 0.0 2.2 2 1 1 3 3 3 0 Thymidylate kinase ABC_tran PF00005.27 gi|435852276|ref|YP_007313862.1| - 0.095 13.2 0.0 4.4 7.8 0.0 2.5 2 0 0 2 2 2 0 ABC transporter AAA_5 PF07728.14 gi|435852276|ref|YP_007313862.1| - 0.17 11.9 0.0 0.64 10.0 0.0 2.0 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) TrwB_AAD_bind PF10412.9 gi|435852276|ref|YP_007313862.1| - 0.18 10.7 0.0 0.28 10.0 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_31 PF13614.6 gi|435852276|ref|YP_007313862.1| - 0.2 11.6 0.9 0.67 9.8 0.3 2.0 2 1 0 2 2 2 0 AAA domain Acetyltransf_1 PF00583.25 gi|435852277|ref|YP_007313863.1| - 1.4e-08 35.0 0.0 1.9e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|435852277|ref|YP_007313863.1| - 1.7e-07 31.2 0.0 7.7e-07 29.1 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|435852277|ref|YP_007313863.1| - 1.2e-06 28.9 0.0 2.5e-06 27.8 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|435852277|ref|YP_007313863.1| - 3.3e-05 23.8 0.0 5.3e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|435852277|ref|YP_007313863.1| - 0.0014 18.8 0.1 0.85 9.7 0.0 2.1 1 1 1 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|435852277|ref|YP_007313863.1| - 0.012 15.1 0.6 0.026 14.0 0.6 1.4 1 1 0 1 1 1 0 Putative acetyl-transferase Aminotran_5 PF00266.19 gi|435852278|ref|YP_007313864.1| - 1e-126 422.9 0.1 1.2e-126 422.7 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|435852278|ref|YP_007313864.1| - 3.2e-08 32.5 0.0 6.3e-08 31.6 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|435852278|ref|YP_007313864.1| - 8.4e-06 25.3 0.2 1.3e-05 24.7 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|435852278|ref|YP_007313864.1| - 0.00041 19.7 0.0 0.00052 19.4 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Plug PF07715.15 gi|435852278|ref|YP_007313864.1| - 0.012 16.2 0.0 0.032 14.8 0.0 1.7 1 0 0 1 1 1 0 TonB-dependent Receptor Plug Domain YcaO PF02624.16 gi|435852280|ref|YP_007313866.1| - 7.7e-82 275.2 0.0 1.1e-81 274.6 0.0 1.2 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding PSI_PsaE PF02427.17 gi|435852280|ref|YP_007313866.1| - 0.11 12.2 0.1 0.28 10.9 0.1 1.6 1 0 0 1 1 1 0 Photosystem I reaction centre subunit IV / PsaE TfuA PF07812.12 gi|435852281|ref|YP_007313867.1| - 1.1e-46 157.5 0.0 2e-46 156.6 0.0 1.4 1 0 0 1 1 1 1 TfuA-like protein CPBP PF02517.16 gi|435852282|ref|YP_007313868.1| - 4.8e-14 52.5 5.4 4.8e-14 52.5 5.4 2.4 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease Flavin_Reduct PF01613.18 gi|435852283|ref|YP_007313869.1| - 1.7e-28 99.6 0.0 2e-28 99.4 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain CxxCxxCC PF03692.15 gi|435852284|ref|YP_007313870.1| - 4.8e-09 36.8 2.4 8.4e-09 36.0 2.4 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.8 gi|435852284|ref|YP_007313870.1| - 0.31 10.8 5.3 0.4 10.5 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3109) UPF0014 PF03649.13 gi|435852285|ref|YP_007313871.1| - 1.4e-80 270.1 15.3 1.6e-80 270.0 15.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) ATPase_gene1 PF09527.10 gi|435852285|ref|YP_007313871.1| - 0.051 13.8 0.2 0.051 13.8 0.2 2.4 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter ABC_tran PF00005.27 gi|435852286|ref|YP_007313872.1| - 8.1e-30 104.1 0.0 1.1e-29 103.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435852286|ref|YP_007313872.1| - 3e-10 40.4 0.8 0.00015 21.7 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|435852286|ref|YP_007313872.1| - 5e-09 35.9 0.5 2.9e-07 30.2 0.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|435852286|ref|YP_007313872.1| - 4.5e-05 23.7 0.2 0.00022 21.5 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|435852286|ref|YP_007313872.1| - 5.2e-05 22.9 0.0 9.5e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|435852286|ref|YP_007313872.1| - 0.0018 18.7 0.0 0.0029 18.0 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|435852286|ref|YP_007313872.1| - 0.0032 16.7 0.2 0.029 13.6 0.2 2.0 1 1 0 1 1 1 1 NB-ARC domain AAA_5 PF07728.14 gi|435852286|ref|YP_007313872.1| - 0.0042 17.1 0.0 0.066 13.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|435852286|ref|YP_007313872.1| - 0.011 15.4 0.0 0.022 14.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|435852286|ref|YP_007313872.1| - 0.017 15.0 0.1 0.032 14.2 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase T2SSE PF00437.20 gi|435852286|ref|YP_007313872.1| - 0.028 13.5 0.0 0.051 12.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.6 gi|435852286|ref|YP_007313872.1| - 0.03 13.9 0.0 0.15 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|435852286|ref|YP_007313872.1| - 0.031 14.5 0.3 2.2 8.6 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|435852286|ref|YP_007313872.1| - 0.034 14.7 0.4 0.033 14.7 0.4 1.5 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|435852286|ref|YP_007313872.1| - 0.039 12.7 0.0 0.058 12.2 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein NTPase_1 PF03266.15 gi|435852286|ref|YP_007313872.1| - 0.072 13.0 0.1 0.81 9.6 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_14 PF13173.6 gi|435852286|ref|YP_007313872.1| - 0.098 12.7 0.0 0.8 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|435852286|ref|YP_007313872.1| - 0.099 12.8 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|435852286|ref|YP_007313872.1| - 0.11 12.9 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ATPase_2 PF01637.18 gi|435852286|ref|YP_007313872.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.7 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|435852286|ref|YP_007313872.1| - 0.14 12.1 0.2 0.58 10.1 0.0 2.0 2 1 0 2 2 2 0 NACHT domain MobB PF03205.14 gi|435852286|ref|YP_007313872.1| - 0.14 12.1 0.0 4.2 7.3 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.6 gi|435852286|ref|YP_007313872.1| - 0.14 12.7 0.3 0.28 11.7 0.2 1.5 1 1 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|435852286|ref|YP_007313872.1| - 0.15 11.7 0.2 0.23 11.2 0.2 1.4 1 1 0 1 1 1 0 Cytidylate kinase MarR PF01047.22 gi|435852287|ref|YP_007313873.1| - 2.8e-10 40.0 0.1 4.4e-10 39.3 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|435852287|ref|YP_007313873.1| - 7.8e-07 28.9 0.0 1.2e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|435852287|ref|YP_007313873.1| - 0.00015 22.2 0.0 0.00023 21.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|435852287|ref|YP_007313873.1| - 0.0027 18.1 0.0 0.0042 17.4 0.0 1.6 1 1 0 1 1 1 1 Penicillinase repressor CENP-B_N PF04218.13 gi|435852287|ref|YP_007313873.1| - 0.0042 16.7 0.3 0.011 15.3 0.0 1.9 2 1 0 2 2 2 1 CENP-B N-terminal DNA-binding domain B-block_TFIIIC PF04182.12 gi|435852287|ref|YP_007313873.1| - 0.0069 16.5 0.7 0.0099 16.0 0.1 1.7 2 0 0 2 2 2 1 B-block binding subunit of TFIIIC HTH_24 PF13412.6 gi|435852287|ref|YP_007313873.1| - 0.0094 15.5 0.1 0.0094 15.5 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|435852287|ref|YP_007313873.1| - 0.0094 16.3 0.0 0.019 15.3 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_34 PF13601.6 gi|435852287|ref|YP_007313873.1| - 0.018 15.2 0.1 0.031 14.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain RNA_pol_Rpc34 PF05158.12 gi|435852287|ref|YP_007313873.1| - 0.034 13.5 0.3 0.049 13.0 0.3 1.3 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HxlR PF01638.17 gi|435852287|ref|YP_007313873.1| - 0.036 13.9 0.1 0.064 13.1 0.1 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix TrmB PF01978.19 gi|435852287|ref|YP_007313873.1| - 0.063 13.2 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|435852287|ref|YP_007313873.1| - 0.093 12.9 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain AAA_18 PF13238.6 gi|435852288|ref|YP_007313874.1| - 5.3e-22 78.8 0.1 7.2e-22 78.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|435852288|ref|YP_007313874.1| - 4.4e-07 30.2 0.1 0.0069 16.6 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_17 PF13207.6 gi|435852288|ref|YP_007313874.1| - 1.3e-06 28.9 0.6 0.00011 22.6 0.3 2.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|435852288|ref|YP_007313874.1| - 8e-06 26.2 1.0 3.3e-05 24.2 1.0 2.2 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|435852288|ref|YP_007313874.1| - 5.3e-05 23.2 1.4 0.02 14.8 0.2 2.2 1 1 0 2 2 2 2 Deoxynucleoside kinase ADK PF00406.22 gi|435852288|ref|YP_007313874.1| - 0.00048 20.3 1.0 1.2 9.2 0.0 2.9 1 1 0 2 2 2 2 Adenylate kinase CoaE PF01121.20 gi|435852288|ref|YP_007313874.1| - 0.0021 17.8 0.7 0.14 11.9 0.0 2.3 1 1 0 2 2 2 1 Dephospho-CoA kinase SKI PF01202.22 gi|435852288|ref|YP_007313874.1| - 0.0037 17.4 0.1 0.2 11.8 0.1 2.2 1 1 0 1 1 1 1 Shikimate kinase KTI12 PF08433.10 gi|435852288|ref|YP_007313874.1| - 0.013 15.0 0.2 0.025 14.0 0.2 1.8 1 1 0 1 1 1 0 Chromatin associated protein KTI12 AAA_22 PF13401.6 gi|435852288|ref|YP_007313874.1| - 0.022 15.0 0.8 0.079 13.2 0.8 2.1 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 gi|435852288|ref|YP_007313874.1| - 0.03 14.0 0.0 0.049 13.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MeaB PF03308.16 gi|435852288|ref|YP_007313874.1| - 0.15 11.1 1.5 0.5 9.3 0.3 2.0 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 gi|435852288|ref|YP_007313874.1| - 0.18 12.2 1.2 0.92 9.9 1.2 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) GATase PF00117.28 gi|435852289|ref|YP_007313875.1| - 4.3e-46 157.1 0.0 4.9e-46 156.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|435852289|ref|YP_007313875.1| - 1.5e-18 67.3 0.1 4.1e-18 65.9 0.1 1.7 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|435852290|ref|YP_007313876.1| - 2.2e-95 319.1 0.0 4.1e-92 308.4 0.0 2.7 3 1 0 3 3 3 2 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|435852290|ref|YP_007313876.1| - 2e-25 89.6 0.9 7.8e-24 84.5 0.5 2.8 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.22 gi|435852291|ref|YP_007313877.1| - 1.3e-33 116.4 0.0 2.3e-33 115.6 0.0 1.3 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Glu_synthase PF01645.17 gi|435852291|ref|YP_007313877.1| - 0.03 13.5 1.6 0.11 11.6 0.1 2.2 2 1 0 3 3 3 0 Conserved region in glutamate synthase TMP-TENI PF02581.17 gi|435852291|ref|YP_007313877.1| - 0.09 12.1 0.0 0.21 10.9 0.0 1.6 1 0 0 1 1 1 0 Thiamine monophosphate synthase Glycos_transf_3 PF00591.21 gi|435852292|ref|YP_007313878.1| - 3.6e-96 321.6 2.2 3.6e-96 321.6 2.2 1.4 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|435852292|ref|YP_007313878.1| - 2e-17 62.8 3.1 5.8e-17 61.3 3.1 1.8 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain mCpol PF18182.1 gi|435852293|ref|YP_007313879.1| - 9.6e-38 129.0 1.9 1.1e-37 128.8 1.9 1.1 1 0 0 1 1 1 1 minimal CRISPR polymerase domain GCH_III PF05165.12 gi|435852293|ref|YP_007313879.1| - 0.026 13.8 0.1 0.032 13.5 0.1 1.1 1 0 0 1 1 1 0 GTP cyclohydrolase III GATase_3 PF07685.14 gi|435852294|ref|YP_007313880.1| - 7.3e-52 175.8 0.1 1.1e-51 175.3 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|435852294|ref|YP_007313880.1| - 6.6e-20 71.5 0.0 1.9e-19 70.0 0.0 1.7 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|435852294|ref|YP_007313880.1| - 3.3e-17 63.0 0.0 2.6e-16 60.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain GATase PF00117.28 gi|435852294|ref|YP_007313880.1| - 7.9e-06 25.8 1.1 7.2e-05 22.6 1.1 2.2 1 1 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|435852294|ref|YP_007313880.1| - 0.001 18.9 0.1 0.0032 17.3 0.0 1.8 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Methyltransf_31 PF13847.6 gi|435852295|ref|YP_007313881.1| - 2.6e-09 37.1 0.1 2.9e-09 36.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|435852295|ref|YP_007313881.1| - 3e-09 37.5 0.2 4.8e-09 36.8 0.2 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|435852295|ref|YP_007313881.1| - 7.1e-09 35.8 0.1 1e-08 35.3 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|435852295|ref|YP_007313881.1| - 2.4e-08 33.7 0.0 3.5e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|435852295|ref|YP_007313881.1| - 3.8e-07 29.8 0.9 4.7e-07 29.5 0.9 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|435852295|ref|YP_007313881.1| - 1.4e-06 28.2 0.0 1.8e-06 27.9 0.0 1.2 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|435852295|ref|YP_007313881.1| - 1.9e-06 28.6 0.1 2.7e-06 28.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|435852295|ref|YP_007313881.1| - 3.8e-05 23.4 0.1 5.3e-05 22.9 0.1 1.3 1 1 0 1 1 1 1 Conserved hypothetical protein 95 DOT1 PF08123.13 gi|435852295|ref|YP_007313881.1| - 6.8e-05 22.5 0.0 9.5e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Histone methylation protein DOT1 Ubie_methyltran PF01209.18 gi|435852295|ref|YP_007313881.1| - 9.5e-05 21.8 0.2 0.00012 21.5 0.2 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|435852295|ref|YP_007313881.1| - 0.00017 22.2 0.1 0.00026 21.6 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|435852295|ref|YP_007313881.1| - 0.00021 21.0 0.0 0.00026 20.7 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.17 gi|435852295|ref|YP_007313881.1| - 0.00051 19.6 0.1 0.0018 17.8 0.0 1.8 2 0 0 2 2 2 1 Putative methyltransferase CMAS PF02353.20 gi|435852295|ref|YP_007313881.1| - 0.0022 17.3 0.0 0.003 16.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|435852295|ref|YP_007313881.1| - 0.0048 16.9 0.0 0.0064 16.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|435852295|ref|YP_007313881.1| - 0.0089 15.9 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|435852295|ref|YP_007313881.1| - 0.011 15.1 0.1 0.013 14.9 0.1 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G tRNA_U5-meth_tr PF05958.11 gi|435852295|ref|YP_007313881.1| - 0.012 14.7 0.2 0.013 14.5 0.2 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_24 PF13578.6 gi|435852295|ref|YP_007313881.1| - 0.02 15.9 0.0 0.044 14.8 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|435852295|ref|YP_007313881.1| - 0.022 14.3 0.1 0.028 14.0 0.1 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase FmrO PF07091.11 gi|435852295|ref|YP_007313881.1| - 0.038 13.5 0.1 0.047 13.2 0.1 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_16 PF10294.9 gi|435852295|ref|YP_007313881.1| - 0.042 13.6 0.0 0.056 13.2 0.0 1.3 1 1 0 1 1 1 0 Lysine methyltransferase Methyltransf_2 PF00891.18 gi|435852295|ref|YP_007313881.1| - 0.048 13.0 0.0 0.063 12.6 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase domain Methyltransf_5 PF01795.19 gi|435852295|ref|YP_007313881.1| - 0.055 13.0 0.0 0.081 12.4 0.0 1.3 1 1 0 1 1 1 0 MraW methylase family Methyltransf_3 PF01596.17 gi|435852295|ref|YP_007313881.1| - 0.088 12.0 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase GATase_3 PF07685.14 gi|435852295|ref|YP_007313881.1| - 0.1 12.2 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain TP_methylase PF00590.20 gi|435852296|ref|YP_007313882.1| - 1.1e-28 100.6 0.0 4.1e-28 98.8 0.0 1.7 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Peptidase_S76 PF13611.6 gi|435852296|ref|YP_007313882.1| - 0.091 13.1 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 Serine peptidase of plant viral polyprotein, P1 TP_methylase PF00590.20 gi|435852297|ref|YP_007313883.1| - 4.1e-47 160.9 0.1 4.7e-47 160.7 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|435852297|ref|YP_007313883.1| - 0.00055 20.3 0.1 0.0012 19.3 0.1 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Glyco_hydro_3_C PF01915.22 gi|435852297|ref|YP_007313883.1| - 0.027 14.4 0.1 0.06 13.3 0.0 1.6 2 0 0 2 2 2 0 Glycosyl hydrolase family 3 C-terminal domain Toprim_Crpt PF13342.6 gi|435852297|ref|YP_007313883.1| - 0.16 11.9 0.0 0.39 10.7 0.0 1.6 1 0 0 1 1 1 0 C-terminal repeat of topoisomerase POTRA_3 PF17287.2 gi|435852297|ref|YP_007313883.1| - 0.17 11.4 0.0 3.5 7.2 0.0 2.3 2 0 0 2 2 2 0 POTRA domain CbiG_N PF11760.8 gi|435852298|ref|YP_007313884.1| - 2.3e-33 114.0 0.8 6.1e-33 112.7 0.2 1.9 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|435852299|ref|YP_007313885.1| - 1.4e-26 93.4 0.3 1.5e-26 93.2 0.3 1.0 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus NusA_N PF08529.11 gi|435852299|ref|YP_007313885.1| - 0.0011 19.3 0.1 0.0011 19.3 0.1 1.2 1 0 0 1 1 1 1 NusA N-terminal domain TP_methylase PF00590.20 gi|435852300|ref|YP_007313886.1| - 1.4e-37 129.7 0.3 1.7e-37 129.4 0.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases IMP_cyclohyd PF07826.11 gi|435852300|ref|YP_007313886.1| - 0.046 13.3 0.4 0.091 12.4 0.1 1.6 2 0 0 2 2 2 0 IMP cyclohydrolase-like protein ArsP_1 PF03773.13 gi|435852300|ref|YP_007313886.1| - 0.11 11.7 0.0 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 Predicted permease CbiC PF02570.15 gi|435852301|ref|YP_007313887.1| - 4.6e-60 202.6 2.4 5.8e-60 202.3 2.4 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase Reductase_C PF14759.6 gi|435852301|ref|YP_007313887.1| - 0.091 13.3 0.1 1 10.0 0.0 2.6 4 0 0 4 4 4 0 Reductase C-terminal DsbD PF02683.15 gi|435852302|ref|YP_007313888.1| - 7.3e-32 111.0 26.9 2e-31 109.5 26.9 1.6 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|435852302|ref|YP_007313888.1| - 8.2e-11 42.2 20.6 1.6e-10 41.2 20.5 1.5 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region UPF0016 PF01169.19 gi|435852302|ref|YP_007313888.1| - 0.011 16.1 3.8 0.011 16.1 3.8 3.0 3 1 0 3 3 3 0 Uncharacterized protein family UPF0016 MerE PF05052.12 gi|435852302|ref|YP_007313888.1| - 0.3 11.1 6.0 0.72 9.8 1.4 2.9 2 1 1 3 3 3 0 MerE protein DUF2269 PF10027.9 gi|435852302|ref|YP_007313888.1| - 0.53 10.3 11.2 0.092 12.8 1.3 2.6 1 1 0 2 2 2 0 Predicted integral membrane protein (DUF2269) Thioredoxin PF00085.20 gi|435852303|ref|YP_007313889.1| - 7.5e-11 41.9 0.0 1.2e-10 41.3 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|435852303|ref|YP_007313889.1| - 6e-05 23.0 0.1 0.00068 19.6 0.0 2.1 2 0 0 2 2 2 1 Thioredoxin domain Thioredoxin_6 PF13848.6 gi|435852303|ref|YP_007313889.1| - 7.7e-05 22.7 0.0 9.7e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.6 gi|435852303|ref|YP_007313889.1| - 0.0072 16.2 0.0 0.0086 15.9 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein DUF4995 PF16386.5 gi|435852303|ref|YP_007313889.1| - 0.017 15.1 0.2 0.091 12.8 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function OST3_OST6 PF04756.13 gi|435852303|ref|YP_007313889.1| - 0.034 13.5 0.0 0.049 13.0 0.0 1.2 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Thioredoxin_4 PF13462.6 gi|435852303|ref|YP_007313889.1| - 0.06 13.5 0.0 0.091 12.9 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_2 PF13098.6 gi|435852303|ref|YP_007313889.1| - 0.089 13.2 0.1 0.35 11.3 0.1 2.0 1 1 0 1 1 1 0 Thioredoxin-like domain RibD_C PF01872.17 gi|435852304|ref|YP_007313890.1| - 8.6e-54 182.4 0.0 9.6e-54 182.3 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain CBS PF00571.28 gi|435852305|ref|YP_007313891.1| - 1.5e-43 147.1 6.2 2.2e-13 50.4 0.1 4.2 4 0 0 4 4 4 4 CBS domain GAF PF01590.26 gi|435852305|ref|YP_007313891.1| - 0.035 14.7 0.2 10 6.7 0.0 2.9 2 1 1 3 3 3 0 GAF domain CAAD PF14159.6 gi|435852305|ref|YP_007313891.1| - 0.053 13.4 0.0 1.5 8.7 0.1 2.6 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase AAA_lid_2 PF17863.1 gi|435852305|ref|YP_007313891.1| - 0.13 12.1 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA lid domain Usp PF00582.26 gi|435852306|ref|YP_007313892.1| - 4.4e-35 121.2 0.0 5e-35 121.1 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Aldo_ket_red PF00248.21 gi|435852306|ref|YP_007313892.1| - 0.026 13.7 0.0 0.043 13.0 0.0 1.4 1 1 0 1 1 1 0 Aldo/keto reductase family IF2_N PF04760.15 gi|435852306|ref|YP_007313892.1| - 0.065 13.1 0.2 1.3 8.9 0.2 2.3 1 1 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region E3_binding PF02817.17 gi|435852306|ref|YP_007313892.1| - 0.08 13.3 0.5 9.7 6.6 0.0 3.0 3 0 0 3 3 3 0 e3 binding domain Amidohydro_1 PF01979.20 gi|435852307|ref|YP_007313893.1| - 4.7e-28 98.5 0.0 1.8e-27 96.6 0.0 1.7 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|435852307|ref|YP_007313893.1| - 7.5e-07 28.8 0.0 1e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase CRM1_repeat PF18777.1 gi|435852307|ref|YP_007313893.1| - 0.01 15.3 0.0 0.021 14.3 0.0 1.5 1 0 0 1 1 1 0 Chromosome region maintenance or exportin repeat Amidohydro_3 PF07969.11 gi|435852307|ref|YP_007313893.1| - 0.016 14.7 0.1 0.047 13.1 0.0 1.7 2 1 0 2 2 2 0 Amidohydrolase family DUF167 PF02594.16 gi|435852308|ref|YP_007313894.1| - 5.7e-22 77.6 0.3 6.9e-22 77.4 0.3 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 IspD PF01128.19 gi|435852308|ref|YP_007313894.1| - 0.034 13.9 0.0 0.039 13.7 0.0 1.0 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Toprim_4 PF13662.6 gi|435852310|ref|YP_007313896.1| - 1.1e-05 25.8 0.1 2.3e-05 24.8 0.1 1.5 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.22 gi|435852310|ref|YP_007313896.1| - 0.0031 17.7 0.3 0.035 14.3 0.3 2.2 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|435852310|ref|YP_007313896.1| - 0.05 14.0 0.0 0.083 13.3 0.0 1.4 1 0 0 1 1 1 0 Toprim-like DUF356 PF04009.12 gi|435852311|ref|YP_007313897.1| - 4.4e-44 149.1 0.4 5.1e-44 148.9 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF356) P5CR_dimer PF14748.6 gi|435852312|ref|YP_007313898.1| - 1.4e-40 137.7 0.7 1.4e-40 137.7 0.7 2.0 3 0 0 3 3 3 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|435852312|ref|YP_007313898.1| - 3.1e-20 72.6 0.3 7.2e-20 71.4 0.3 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|435852312|ref|YP_007313898.1| - 2.2e-05 24.1 0.9 4.9e-05 23.0 0.9 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 gi|435852312|ref|YP_007313898.1| - 7.9e-05 22.9 0.5 0.0003 21.0 0.3 2.1 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|435852312|ref|YP_007313898.1| - 0.0068 16.0 0.1 0.01 15.4 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_Gly3P_dh_N PF01210.23 gi|435852312|ref|YP_007313898.1| - 0.0072 16.3 7.2 0.076 13.0 7.0 2.2 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|435852312|ref|YP_007313898.1| - 0.016 14.5 0.0 0.027 13.8 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|435852312|ref|YP_007313898.1| - 0.052 13.7 0.1 0.12 12.5 0.1 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Shikimate_DH PF01488.20 gi|435852312|ref|YP_007313898.1| - 0.19 11.8 2.0 0.37 10.8 0.3 2.2 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase HTH_31 PF13560.6 gi|435852313|ref|YP_007313899.1| - 2.3e-05 24.6 0.3 4e-05 23.9 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|435852313|ref|YP_007313899.1| - 2.6e-05 24.2 1.5 4.3e-05 23.5 1.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|435852313|ref|YP_007313899.1| - 0.00022 21.2 1.3 0.00042 20.3 1.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|435852313|ref|YP_007313899.1| - 0.00034 20.4 2.1 0.00052 19.8 1.0 1.9 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_32 PF13565.6 gi|435852313|ref|YP_007313899.1| - 0.015 15.9 2.5 0.037 14.6 1.5 2.1 1 1 1 2 2 2 0 Homeodomain-like domain DUF4088 PF13317.6 gi|435852313|ref|YP_007313899.1| - 0.065 12.8 0.1 0.08 12.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4088) DUF1272 PF06906.11 gi|435852313|ref|YP_007313899.1| - 0.075 13.1 0.5 0.13 12.4 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) TFIIA_gamma_N PF02268.16 gi|435852313|ref|YP_007313899.1| - 0.1 12.6 0.1 1.5 8.9 0.0 2.3 2 0 0 2 2 2 0 Transcription initiation factor IIA, gamma subunit, helical domain Chordopox_RPO7 PF05864.12 gi|435852313|ref|YP_007313899.1| - 0.13 12.6 0.0 0.25 11.6 0.0 1.6 1 0 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) DUF179 PF02622.15 gi|435852313|ref|YP_007313899.1| - 0.15 12.1 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized ACR, COG1678 AAA PF00004.29 gi|435852314|ref|YP_007313900.1| - 3.2e-44 150.6 0.2 8.1e-44 149.3 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|435852314|ref|YP_007313900.1| - 3.1e-14 52.5 0.3 9.6e-14 50.9 0.3 1.9 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|435852314|ref|YP_007313900.1| - 4.6e-10 39.3 0.1 1.3e-09 37.9 0.1 1.8 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_5 PF07728.14 gi|435852314|ref|YP_007313900.1| - 1.1e-08 35.1 0.0 3.1e-08 33.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|435852314|ref|YP_007313900.1| - 5.8e-08 33.0 0.0 1.3e-06 28.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|435852314|ref|YP_007313900.1| - 6.5e-07 29.9 0.6 0.00047 20.6 0.0 2.8 2 1 1 3 3 3 1 AAA ATPase domain DUF815 PF05673.13 gi|435852314|ref|YP_007313900.1| - 8.8e-07 28.3 0.0 1.7e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Prot_ATP_OB_N PF17758.1 gi|435852314|ref|YP_007313900.1| - 2.2e-05 24.0 0.3 8.6e-05 22.1 0.1 2.1 2 0 0 2 2 2 1 Proteasomal ATPase OB N-terminal domain RuvB_N PF05496.12 gi|435852314|ref|YP_007313900.1| - 9.3e-05 22.2 0.0 0.00025 20.8 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|435852314|ref|YP_007313900.1| - 0.00025 21.3 2.3 0.006 16.9 0.1 2.8 2 1 1 3 3 3 1 AAA domain Troponin PF00992.20 gi|435852314|ref|YP_007313900.1| - 0.001 19.4 2.4 0.0023 18.2 2.4 1.5 1 0 0 1 1 1 1 Troponin AAA_18 PF13238.6 gi|435852314|ref|YP_007313900.1| - 0.0011 19.6 0.0 0.021 15.4 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|435852314|ref|YP_007313900.1| - 0.0018 18.5 0.2 0.013 15.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|435852314|ref|YP_007313900.1| - 0.0026 17.1 1.9 0.034 13.5 0.0 2.9 2 1 1 3 3 3 1 KaiC Sigma54_activat PF00158.26 gi|435852314|ref|YP_007313900.1| - 0.0031 17.3 0.0 0.028 14.1 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain TIP49 PF06068.13 gi|435852314|ref|YP_007313900.1| - 0.0068 15.7 0.1 0.013 14.7 0.1 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain RNA_helicase PF00910.22 gi|435852314|ref|YP_007313900.1| - 0.0091 16.4 0.0 0.019 15.4 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_3 PF07726.11 gi|435852314|ref|YP_007313900.1| - 0.011 15.6 0.0 0.027 14.3 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|435852314|ref|YP_007313900.1| - 0.017 14.7 0.0 0.038 13.5 0.0 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|435852314|ref|YP_007313900.1| - 0.024 14.4 0.0 0.056 13.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|435852314|ref|YP_007313900.1| - 0.026 14.7 0.1 0.066 13.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|435852314|ref|YP_007313900.1| - 0.032 13.5 0.5 0.14 11.4 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin Mg_chelatase PF01078.21 gi|435852314|ref|YP_007313900.1| - 0.037 13.4 0.0 0.083 12.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|435852314|ref|YP_007313900.1| - 0.044 13.5 0.2 0.14 11.9 0.0 1.9 2 0 0 2 2 1 0 IstB-like ATP binding protein ADIP PF11559.8 gi|435852314|ref|YP_007313900.1| - 0.049 13.7 1.3 0.088 12.9 1.3 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding TsaE PF02367.17 gi|435852314|ref|YP_007313900.1| - 0.051 13.6 0.0 0.095 12.7 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|435852314|ref|YP_007313900.1| - 0.068 13.1 0.1 0.45 10.4 0.0 2.2 1 1 1 2 2 2 0 NACHT domain AAA_30 PF13604.6 gi|435852314|ref|YP_007313900.1| - 0.1 12.3 0.1 0.25 11.0 0.1 1.7 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|435852314|ref|YP_007313900.1| - 0.15 12.0 1.0 4.9 7.0 0.0 2.5 2 1 1 3 3 3 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|435852314|ref|YP_007313900.1| - 0.2 11.2 1.3 1.8 8.1 0.0 2.8 3 0 0 3 3 3 0 AAA domain Tektin PF03148.14 gi|435852314|ref|YP_007313900.1| - 0.29 9.8 5.9 0.069 11.9 1.2 2.1 3 0 0 3 3 3 0 Tektin family DHR10 PF18595.1 gi|435852314|ref|YP_007313900.1| - 0.43 10.7 6.5 0.98 9.5 6.5 1.6 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain bZIP_2 PF07716.15 gi|435852314|ref|YP_007313900.1| - 1 9.5 7.1 0.5 10.5 1.7 2.5 1 1 1 2 2 2 0 Basic region leucine zipper DUF99 PF01949.16 gi|435852315|ref|YP_007313901.1| - 2.4e-61 206.4 0.1 2.7e-61 206.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Endonuclease_5 PF04493.14 gi|435852315|ref|YP_007313901.1| - 0.00041 20.1 0.0 0.0007 19.3 0.0 1.4 1 0 0 1 1 1 1 Endonuclease V PGM_PMM_I PF02878.16 gi|435852316|ref|YP_007313902.1| - 1.6e-41 141.3 0.2 3.9e-41 140.0 0.2 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|435852316|ref|YP_007313902.1| - 3.4e-27 95.1 0.0 6.7e-27 94.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|435852316|ref|YP_007313902.1| - 6.6e-27 94.0 0.7 2.1e-26 92.3 0.2 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|435852316|ref|YP_007313902.1| - 7.3e-11 42.1 0.0 2.4e-10 40.5 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Asn_synthase PF00733.21 gi|435852317|ref|YP_007313903.1| - 1.3e-09 38.2 0.0 1.9e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|435852317|ref|YP_007313903.1| - 1.2e-08 34.2 0.0 2.4e-06 26.6 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.17 gi|435852317|ref|YP_007313903.1| - 1.2e-08 34.4 0.0 2e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|435852317|ref|YP_007313903.1| - 1.6e-07 31.0 0.0 5.6e-07 29.3 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|435852317|ref|YP_007313903.1| - 2.6e-05 24.0 0.1 0.00041 20.2 0.1 2.1 1 1 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.19 gi|435852317|ref|YP_007313903.1| - 0.00023 20.6 0.1 0.00051 19.4 0.0 1.5 2 0 0 2 2 2 1 Arginosuccinate synthase PAPS_reduct PF01507.19 gi|435852317|ref|YP_007313903.1| - 0.016 15.2 0.0 0.035 14.2 0.0 1.6 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.14 gi|435852317|ref|YP_007313903.1| - 0.029 13.9 0.0 0.059 13.0 0.0 1.6 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) QueH PF02677.14 gi|435852317|ref|YP_007313903.1| - 0.077 13.1 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Epoxyqueuosine reductase QueH Acetyltransf_7 PF13508.7 gi|435852318|ref|YP_007313904.1| - 1.9e-10 41.0 0.1 2.9e-10 40.4 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|435852318|ref|YP_007313904.1| - 1.8e-08 34.7 0.0 2.4e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|435852318|ref|YP_007313904.1| - 2.8e-07 30.5 0.0 5.5e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|435852318|ref|YP_007313904.1| - 0.007 16.3 0.0 0.017 15.1 0.0 1.6 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|435852318|ref|YP_007313904.1| - 0.019 15.0 0.0 1.8 8.6 0.0 2.2 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain AstA PF04958.12 gi|435852318|ref|YP_007313904.1| - 0.055 12.0 0.0 0.37 9.3 0.0 1.9 1 1 1 2 2 2 0 Arginine N-succinyltransferase beta subunit Acetyltransf_CG PF14542.6 gi|435852318|ref|YP_007313904.1| - 0.11 12.7 0.0 0.21 11.7 0.0 1.6 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF531 PF04407.12 gi|435852319|ref|YP_007313905.1| - 8.9e-84 279.8 0.0 1e-83 279.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) SPOUT_MTase_2 PF14419.6 gi|435852319|ref|YP_007313905.1| - 0.062 12.7 0.0 0.083 12.3 0.0 1.2 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP Methyltrn_RNA_4 PF09936.9 gi|435852319|ref|YP_007313905.1| - 0.18 11.6 0.0 0.28 11.0 0.0 1.2 1 0 0 1 1 1 0 SAM-dependent RNA methyltransferase tRNA-synt_2d PF01409.20 gi|435852320|ref|YP_007313906.1| - 2.1e-93 312.4 0.0 2.8e-93 311.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|435852320|ref|YP_007313906.1| - 9.2e-09 35.1 0.0 1.1e-05 25.0 0.0 2.5 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|435852320|ref|YP_007313906.1| - 0.0022 17.1 0.2 0.15 11.2 0.0 2.8 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) HTH_Crp_2 PF13545.6 gi|435852320|ref|YP_007313906.1| - 0.013 15.5 1.0 0.15 12.1 0.0 2.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|435852320|ref|YP_007313906.1| - 0.015 14.9 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|435852320|ref|YP_007313906.1| - 0.018 14.9 0.4 0.052 13.4 0.1 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Rio2_N PF09202.11 gi|435852320|ref|YP_007313906.1| - 0.048 13.9 0.1 9.8 6.5 0.0 2.4 2 0 0 2 2 2 0 Rio2, N-terminal DUF3289 PF11692.8 gi|435852320|ref|YP_007313906.1| - 0.082 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3289) tRNA-synt_1b PF00579.25 gi|435852321|ref|YP_007313907.1| - 2.3e-36 125.6 0.0 5.3e-21 75.2 0.0 2.0 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) Radical_SAM PF04055.21 gi|435852322|ref|YP_007313908.1| - 2.2e-12 47.6 0.2 3.3e-12 47.1 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|435852322|ref|YP_007313908.1| - 4.2e-05 24.0 0.1 0.00011 22.7 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|435852322|ref|YP_007313908.1| - 0.0031 17.6 0.0 0.0065 16.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|435852322|ref|YP_007313908.1| - 0.0037 17.5 0.0 0.0086 16.3 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain QCR10 PF09796.9 gi|435852322|ref|YP_007313908.1| - 0.19 11.8 0.0 0.49 10.5 0.0 1.7 1 0 0 1 1 1 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) ATPase PF06745.13 gi|435852323|ref|YP_007313909.1| - 9.9e-09 34.9 0.6 1e-08 34.9 0.6 1.2 1 0 0 1 1 1 1 KaiC eIF-5_eIF-2B PF01873.17 gi|435852324|ref|YP_007313910.1| - 8.8e-38 128.8 0.0 1.3e-37 128.2 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|435852324|ref|YP_007313910.1| - 7.5e-10 38.7 0.2 2.1e-09 37.2 0.1 1.9 2 0 0 2 2 2 1 TRAM domain Zn-ribbon_8 PF09723.10 gi|435852324|ref|YP_007313910.1| - 0.055 13.6 0.5 0.11 12.6 0.5 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|435852324|ref|YP_007313910.1| - 0.13 11.7 1.1 13 5.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf_C2H2_13 PF18508.1 gi|435852324|ref|YP_007313910.1| - 0.14 11.8 0.9 0.36 10.4 0.0 2.1 2 0 0 2 2 2 0 Zinc finger domain DNA_RNApol_7kD PF03604.13 gi|435852324|ref|YP_007313910.1| - 5.8 6.7 6.8 41 4.0 7.2 2.0 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L16 PF00252.18 gi|435852325|ref|YP_007313911.1| - 3.4e-34 117.7 0.8 4.2e-34 117.4 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Methyltransf_3 PF01596.17 gi|435852325|ref|YP_007313911.1| - 0.12 11.5 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase MoCF_biosynth PF00994.24 gi|435852326|ref|YP_007313912.1| - 7.6e-32 110.0 0.0 9e-32 109.7 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain ATPase PF06745.13 gi|435852327|ref|YP_007313913.1| - 2.7e-05 23.6 0.3 4.2e-05 23.0 0.3 1.3 1 1 0 1 1 1 1 KaiC PAXNEB PF05625.11 gi|435852327|ref|YP_007313913.1| - 0.00088 18.5 0.0 0.002 17.3 0.0 1.6 2 0 0 2 2 2 1 PAXNEB protein DUF835 PF05763.12 gi|435852327|ref|YP_007313913.1| - 0.004 16.9 0.1 0.011 15.5 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF835) BBS1 PF14779.6 gi|435852327|ref|YP_007313913.1| - 0.12 11.8 0.1 1.5 8.2 0.0 2.0 2 0 0 2 2 2 0 Ciliary BBSome complex subunit 1 CRS1_YhbY PF01985.21 gi|435852328|ref|YP_007313914.1| - 1.1e-19 70.4 1.8 1.2e-19 70.3 1.8 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain DUF4831 PF16115.5 gi|435852328|ref|YP_007313914.1| - 0.0045 16.1 0.5 0.0055 15.8 0.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4831) Cas_Csy2 PF09614.10 gi|435852328|ref|YP_007313914.1| - 0.1 11.9 0.2 0.1 11.9 0.2 1.0 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csy2) DUF190 PF02641.15 gi|435852329|ref|YP_007313915.1| - 1.8e-32 111.5 0.3 2.1e-32 111.3 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 CRCB PF02537.15 gi|435852330|ref|YP_007313916.1| - 5.1e-21 74.8 8.8 6.5e-21 74.4 8.8 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) DAGK_cat PF00781.24 gi|435852330|ref|YP_007313916.1| - 0.11 12.1 0.9 0.17 11.5 0.9 1.2 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain CRCB PF02537.15 gi|435852331|ref|YP_007313917.1| - 2.1e-17 63.2 11.3 2.7e-17 62.9 11.3 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) MoeA_N PF03453.17 gi|435852332|ref|YP_007313918.1| - 1.6e-39 135.2 0.0 2.5e-39 134.6 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|435852332|ref|YP_007313918.1| - 4.2e-20 71.9 0.0 7.4e-20 71.1 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|435852332|ref|YP_007313918.1| - 8.7e-12 45.1 0.1 1.2e-10 41.4 0.0 2.5 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) ThiS PF02597.20 gi|435852333|ref|YP_007313919.1| - 2.8e-17 63.1 0.0 3.1e-17 63.0 0.0 1.0 1 0 0 1 1 1 1 ThiS family DUF1761 PF08570.10 gi|435852334|ref|YP_007313920.1| - 0.018 15.3 2.5 0.018 15.3 2.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1761) TssN PF17555.2 gi|435852334|ref|YP_007313920.1| - 0.39 10.0 14.9 0.47 9.8 14.9 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssN GyrI-like PF06445.15 gi|435852335|ref|YP_007313921.1| - 4.4e-23 82.3 0.1 4.9e-23 82.1 0.1 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 gi|435852335|ref|YP_007313921.1| - 6.7e-15 55.5 0.0 7.4e-15 55.4 0.0 1.0 1 0 0 1 1 1 1 Integron-associated effector binding protein Flavoprotein PF02441.19 gi|435852336|ref|YP_007313922.1| - 1.9e-26 92.7 0.0 2.3e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein HD PF01966.22 gi|435852338|ref|YP_007313924.1| - 7.1e-14 52.1 4.9 2.8e-13 50.1 2.2 2.5 2 0 0 2 2 2 1 HD domain HDOD PF08668.12 gi|435852338|ref|YP_007313924.1| - 0.0022 17.5 0.0 0.004 16.6 0.0 1.4 1 0 0 1 1 1 1 HDOD domain FBA PF04300.13 gi|435852338|ref|YP_007313924.1| - 0.09 12.5 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 F-box associated region UPF0052 PF01933.18 gi|435852339|ref|YP_007313925.1| - 4.2e-50 170.7 0.0 4.8e-50 170.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Pribosyltran PF00156.27 gi|435852340|ref|YP_007313926.1| - 1.7e-20 73.2 0.5 2.1e-20 72.9 0.5 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|435852340|ref|YP_007313926.1| - 6e-05 22.6 0.3 0.00011 21.7 0.2 1.5 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|435852340|ref|YP_007313926.1| - 0.0081 15.7 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Diphthamide_syn PF01866.17 gi|435852341|ref|YP_007313927.1| - 2e-79 267.2 0.0 2.4e-79 267.0 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein PrmA PF06325.13 gi|435852342|ref|YP_007313928.1| - 2.1e-15 56.9 0.0 2.8e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|435852342|ref|YP_007313928.1| - 2.7e-15 56.3 0.0 3.9e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|435852342|ref|YP_007313928.1| - 7.8e-13 48.5 0.0 1.1e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|435852342|ref|YP_007313928.1| - 8.8e-13 48.8 0.1 2.4e-12 47.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|435852342|ref|YP_007313928.1| - 8.4e-09 36.0 0.1 2.1e-07 31.5 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 gi|435852342|ref|YP_007313928.1| - 2.3e-08 34.0 0.3 1.2e-07 31.6 0.2 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|435852342|ref|YP_007313928.1| - 3.3e-05 23.6 0.0 5.4e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|435852342|ref|YP_007313928.1| - 0.00043 20.1 0.0 0.00047 20.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|435852342|ref|YP_007313928.1| - 0.00063 19.4 0.0 0.00086 18.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 gi|435852342|ref|YP_007313928.1| - 0.00089 20.0 0.0 0.0016 19.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|435852342|ref|YP_007313928.1| - 0.00089 18.8 0.0 0.0019 17.7 0.0 1.5 1 1 0 1 1 1 1 RRNA methyltransferase AviRa N6_Mtase PF02384.16 gi|435852342|ref|YP_007313928.1| - 0.0014 18.0 0.0 0.0022 17.3 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Met_10 PF02475.16 gi|435852342|ref|YP_007313928.1| - 0.0015 18.3 0.0 0.0035 17.1 0.0 1.5 1 1 0 1 1 1 1 Met-10+ like-protein Ubie_methyltran PF01209.18 gi|435852342|ref|YP_007313928.1| - 0.0033 16.8 0.0 0.0048 16.3 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|435852342|ref|YP_007313928.1| - 0.0054 16.7 0.0 0.0072 16.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|435852342|ref|YP_007313928.1| - 0.014 14.7 0.2 0.023 14.0 0.2 1.3 1 0 0 1 1 1 0 O-methyltransferase domain FmrO PF07091.11 gi|435852342|ref|YP_007313928.1| - 0.018 14.6 0.0 0.026 14.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_18 PF12847.7 gi|435852342|ref|YP_007313928.1| - 0.11 12.5 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_8 PF05148.15 gi|435852342|ref|YP_007313928.1| - 0.11 12.3 0.1 0.52 10.1 0.1 2.0 1 1 0 1 1 1 0 Hypothetical methyltransferase ADH_zinc_N PF00107.26 gi|435852342|ref|YP_007313928.1| - 0.15 12.0 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase ECR1_N PF14382.6 gi|435852343|ref|YP_007313929.1| - 2.9e-09 36.6 0.1 4.9e-09 35.8 0.1 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.9 gi|435852343|ref|YP_007313929.1| - 3.9e-06 27.4 2.3 0.00011 22.8 2.3 2.8 1 1 0 1 1 1 1 Exosome component EXOSC1/CSL4 HypA PF01155.19 gi|435852343|ref|YP_007313929.1| - 0.0025 17.8 1.3 0.0061 16.6 1.3 1.6 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NOB1_Zn_bind PF08772.11 gi|435852343|ref|YP_007313929.1| - 0.011 15.9 1.1 0.025 14.8 1.1 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Zn_Tnp_IS91 PF14319.6 gi|435852343|ref|YP_007313929.1| - 0.018 15.0 0.5 0.032 14.3 0.5 1.4 1 0 0 1 1 1 0 Transposase zinc-binding domain Prok-RING_1 PF14446.6 gi|435852343|ref|YP_007313929.1| - 0.024 14.6 0.4 0.05 13.5 0.4 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DZR PF12773.7 gi|435852343|ref|YP_007313929.1| - 0.065 13.3 0.7 0.13 12.3 0.7 1.4 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.12 gi|435852343|ref|YP_007313929.1| - 0.15 12.2 3.3 0.3 11.3 3.3 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.6 gi|435852343|ref|YP_007313929.1| - 0.21 11.3 2.0 0.67 9.7 2.0 1.9 1 1 0 1 1 1 0 zinc-ribbon domain S1 PF00575.23 gi|435852343|ref|YP_007313929.1| - 0.43 11.0 7.1 0.55 10.6 0.1 3.1 4 0 0 4 4 4 0 S1 RNA binding domain RNA_pol_L_2 PF13656.6 gi|435852344|ref|YP_007313930.1| - 5.1e-19 67.8 0.8 6.7e-19 67.4 0.8 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|435852344|ref|YP_007313930.1| - 1.4e-06 27.6 0.2 3.7e-06 26.3 0.2 1.7 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain FMN_red PF03358.15 gi|435852345|ref|YP_007313931.1| - 9e-31 106.7 0.0 1.1e-30 106.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|435852345|ref|YP_007313931.1| - 5e-09 36.1 0.0 6.1e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2284 PF10050.9 gi|435852345|ref|YP_007313931.1| - 0.022 14.5 0.2 0.032 14.0 0.2 1.2 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) SepSecS PF05889.13 gi|435852346|ref|YP_007313932.1| - 6.8e-54 183.0 0.0 3.8e-53 180.6 0.0 1.8 2 0 0 2 2 2 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|435852346|ref|YP_007313932.1| - 1.3e-18 67.1 0.0 1.9e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|435852346|ref|YP_007313932.1| - 1e-08 34.8 0.0 1.4e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II OKR_DC_1 PF01276.20 gi|435852346|ref|YP_007313932.1| - 0.00053 18.8 0.0 0.0013 17.6 0.0 1.5 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Pyridoxal_deC PF00282.19 gi|435852346|ref|YP_007313932.1| - 0.00071 18.4 0.0 0.0013 17.5 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain DegT_DnrJ_EryC1 PF01041.17 gi|435852346|ref|YP_007313932.1| - 0.0027 17.1 0.2 0.0079 15.5 0.1 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|435852346|ref|YP_007313932.1| - 0.0051 15.4 0.0 0.008 14.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|435852346|ref|YP_007313932.1| - 0.065 12.5 0.0 0.083 12.1 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase PspC PF04024.12 gi|435852346|ref|YP_007313932.1| - 0.15 11.9 0.0 0.3 10.9 0.0 1.5 1 0 0 1 1 1 0 PspC domain MS_channel PF00924.18 gi|435852347|ref|YP_007313933.1| - 5.2e-19 68.6 0.1 5.2e-19 68.6 0.1 1.8 2 0 0 2 2 2 1 Mechanosensitive ion channel zf_CopZ PF18423.1 gi|435852348|ref|YP_007313934.1| - 5.6e-23 80.7 0.3 1.1e-22 79.8 0.3 1.5 1 0 0 1 1 1 1 Zinc binding domain Fer2_BFD PF04324.15 gi|435852348|ref|YP_007313934.1| - 0.00014 22.2 1.9 0.00034 20.9 1.8 1.8 1 1 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Lar_restr_allev PF14354.6 gi|435852348|ref|YP_007313934.1| - 0.038 14.4 0.0 0.038 14.4 0.0 1.7 2 0 0 2 2 2 0 Restriction alleviation protein Lar CTP_transf_like PF01467.26 gi|435852350|ref|YP_007313936.1| - 3.9e-17 62.8 0.0 9.8e-17 61.5 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase-like FrhB_FdhB_C PF04432.13 gi|435852351|ref|YP_007313937.1| - 3.3e-37 127.7 0.1 6.9e-37 126.6 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|435852351|ref|YP_007313937.1| - 4.8e-15 55.5 0.0 9.5e-15 54.5 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_7 PF12838.7 gi|435852351|ref|YP_007313937.1| - 1.4e-06 28.8 9.7 1.4e-06 28.8 9.7 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|435852351|ref|YP_007313937.1| - 1.8e-06 27.5 5.8 1.8e-06 27.5 5.8 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435852351|ref|YP_007313937.1| - 4.2e-06 26.8 10.8 4.2e-06 26.8 10.8 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|435852351|ref|YP_007313937.1| - 2.1e-05 24.9 6.1 7.2e-05 23.2 6.1 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435852351|ref|YP_007313937.1| - 2.4e-05 24.4 8.0 2.4e-05 24.4 8.0 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435852351|ref|YP_007313937.1| - 0.00051 20.9 11.9 0.00051 20.9 11.9 2.8 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|435852351|ref|YP_007313937.1| - 0.0007 19.6 4.8 0.0007 19.6 4.8 2.8 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|435852351|ref|YP_007313937.1| - 0.0008 20.1 3.6 0.2 12.4 0.5 2.9 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|435852351|ref|YP_007313937.1| - 0.0008 19.9 7.3 0.0032 18.0 7.4 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435852351|ref|YP_007313937.1| - 0.0012 18.8 5.3 0.0012 18.8 5.3 2.8 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|435852351|ref|YP_007313937.1| - 0.0029 17.7 13.3 0.0029 17.7 13.3 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435852351|ref|YP_007313937.1| - 0.011 16.2 2.6 0.011 16.2 2.6 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|435852351|ref|YP_007313937.1| - 0.058 14.2 4.7 2.1 9.2 0.7 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|435852351|ref|YP_007313937.1| - 0.25 11.9 10.9 0.63 10.6 4.7 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Bac_luciferase PF00296.20 gi|435852352|ref|YP_007313938.1| - 1.2e-62 212.2 0.0 1.4e-62 211.9 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase BATS PF06968.13 gi|435852352|ref|YP_007313938.1| - 0.0095 16.1 0.0 0.41 10.8 0.0 2.5 2 1 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain PHP PF02811.19 gi|435852352|ref|YP_007313938.1| - 0.012 15.9 0.0 0.019 15.3 0.0 1.4 1 1 0 1 1 1 0 PHP domain DUF2180 PF09947.9 gi|435852353|ref|YP_007313939.1| - 1.9e-25 88.6 10.7 2.3e-25 88.3 10.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) Tnp_zf-ribbon_2 PF13842.6 gi|435852353|ref|YP_007313939.1| - 0.069 14.0 8.1 0.081 13.7 2.5 2.4 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Transp_Tc5_C PF04236.15 gi|435852353|ref|YP_007313939.1| - 0.1 12.9 7.6 0.26 11.7 1.4 2.1 1 1 1 2 2 2 0 Tc5 transposase C-terminal domain FOLN PF09289.10 gi|435852353|ref|YP_007313939.1| - 0.36 11.1 0.4 0.36 11.1 0.4 2.9 3 0 0 3 3 3 0 Follistatin/Osteonectin-like EGF domain zf-BED PF02892.15 gi|435852353|ref|YP_007313939.1| - 0.4 10.8 8.5 1.8 8.6 0.5 2.7 2 1 0 2 2 2 0 BED zinc finger Ribosomal_S27e PF01667.17 gi|435852353|ref|YP_007313939.1| - 0.64 9.8 8.2 5.6 6.8 5.8 2.5 2 1 0 2 2 2 0 Ribosomal protein S27 TackOD1 PF18551.1 gi|435852353|ref|YP_007313939.1| - 1.3 8.7 8.4 0.47 10.1 2.0 2.0 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 DUF2180 PF09947.9 gi|435852354|ref|YP_007313940.1| - 1.4e-23 82.7 5.5 1.5e-23 82.5 5.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) zf-UBP_var PF17807.1 gi|435852354|ref|YP_007313940.1| - 0.023 14.5 3.1 0.023 14.5 3.1 1.6 2 0 0 2 2 2 0 Variant UBP zinc finger Tnp_zf-ribbon_2 PF13842.6 gi|435852354|ref|YP_007313940.1| - 0.045 14.6 5.6 0.045 14.6 5.6 1.9 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Transp_Tc5_C PF04236.15 gi|435852354|ref|YP_007313940.1| - 1.4 9.4 8.5 0.74 10.2 5.6 1.8 2 0 0 2 2 2 0 Tc5 transposase C-terminal domain zf-AN1 PF01428.16 gi|435852354|ref|YP_007313940.1| - 2.2 8.5 9.2 4.4 7.6 5.5 2.4 2 1 1 3 3 3 0 AN1-like Zinc finger zf-BED PF02892.15 gi|435852354|ref|YP_007313940.1| - 2.8 8.0 0.0 2.8 8.0 0.0 2.7 2 1 0 2 2 2 0 BED zinc finger CMD PF02627.20 gi|435852355|ref|YP_007313941.1| - 1.2e-17 63.7 0.3 1.8e-17 63.2 0.3 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PA26 PF04636.13 gi|435852355|ref|YP_007313941.1| - 0.0045 16.0 0.0 0.0053 15.7 0.0 1.0 1 0 0 1 1 1 1 PA26 p53-induced protein (sestrin) SapB_1 PF05184.15 gi|435852355|ref|YP_007313941.1| - 0.032 14.3 0.2 0.075 13.1 0.2 1.6 1 0 0 1 1 1 0 Saposin-like type B, region 1 UXS1_N PF11803.8 gi|435852355|ref|YP_007313941.1| - 0.045 14.1 0.0 0.069 13.5 0.0 1.3 1 0 0 1 1 1 0 UDP-glucuronate decarboxylase N-terminal Cytochrome_C554 PF13435.6 gi|435852356|ref|YP_007313942.1| - 9.4e-11 42.5 6.7 1.6e-08 35.4 0.9 2.5 2 0 0 2 2 2 2 Cytochrome c554 and c-prime Cytochrome_C7 PF14522.6 gi|435852356|ref|YP_007313942.1| - 5.4e-06 26.3 9.1 0.013 15.5 2.1 3.0 1 1 2 3 3 3 3 Cytochrome c7 and related cytochrome c C1_1 PF00130.22 gi|435852356|ref|YP_007313942.1| - 0.0032 17.3 6.5 1.7 8.6 0.1 3.4 3 0 0 3 3 3 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Cytochrom_c3_2 PF14537.6 gi|435852356|ref|YP_007313942.1| - 0.0069 16.8 13.5 0.72 10.4 2.9 3.7 2 2 2 4 4 4 3 Cytochrome c3 Cytochrom_NNT PF03264.14 gi|435852356|ref|YP_007313942.1| - 0.024 14.4 11.2 0.16 11.6 0.2 3.4 2 1 1 3 3 3 0 NapC/NirT cytochrome c family, N-terminal region DZR PF12773.7 gi|435852356|ref|YP_007313942.1| - 0.047 13.7 2.6 9.1 6.4 0.1 3.3 3 0 0 3 3 3 0 Double zinc ribbon Paired_CXXCH_1 PF09699.10 gi|435852356|ref|YP_007313942.1| - 0.049 13.4 16.7 7.8 6.3 0.1 4.8 3 2 1 4 4 4 0 Doubled CXXCH motif (Paired_CXXCH_1) GSu_C4xC__C2xCH PF09698.10 gi|435852356|ref|YP_007313942.1| - 0.34 11.7 16.3 7.4 7.4 2.2 4.9 4 1 0 4 4 4 0 Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C2xCH) Cytochrom_C552 PF02335.15 gi|435852356|ref|YP_007313942.1| - 1.5 7.7 13.2 0.041 12.8 4.2 2.5 2 2 1 3 3 3 0 Cytochrome c552 Cytochrome_CBB3 PF13442.6 gi|435852356|ref|YP_007313942.1| - 1.9 8.9 17.7 1.6 9.1 0.5 5.0 3 2 2 5 5 5 0 Cytochrome C oxidase, cbb3-type, subunit III Fer4 PF00037.27 gi|435852357|ref|YP_007313943.1| - 1.8e-14 52.9 14.9 8e-10 38.1 5.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435852357|ref|YP_007313943.1| - 1e-11 44.8 20.7 1.4e-07 31.5 10.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435852357|ref|YP_007313943.1| - 1.9e-11 43.5 13.4 5.8e-08 32.5 4.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435852357|ref|YP_007313943.1| - 5.3e-11 42.9 5.8 6.7e-11 42.6 5.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435852357|ref|YP_007313943.1| - 6e-10 38.6 10.3 3.9e-06 26.6 3.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435852357|ref|YP_007313943.1| - 7.7e-10 38.8 5.1 9.4e-10 38.5 5.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435852357|ref|YP_007313943.1| - 2.4e-07 30.8 7.4 3.3e-07 30.3 7.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435852357|ref|YP_007313943.1| - 5.5e-07 30.4 7.1 0.00039 21.3 2.8 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|435852357|ref|YP_007313943.1| - 7e-07 29.7 4.8 0.00051 20.5 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|435852357|ref|YP_007313943.1| - 2.7e-06 28.0 12.9 0.00023 21.8 1.0 2.6 1 1 2 3 3 3 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|435852357|ref|YP_007313943.1| - 4e-06 27.2 7.5 0.00085 19.7 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435852357|ref|YP_007313943.1| - 1.1e-05 25.5 2.5 1.1e-05 25.5 2.5 2.4 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|435852357|ref|YP_007313943.1| - 2.2e-05 24.9 12.6 0.013 16.0 1.3 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|435852357|ref|YP_007313943.1| - 3.7e-05 24.3 13.0 0.00073 20.3 5.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain ETF_QO PF05187.13 gi|435852357|ref|YP_007313943.1| - 0.00082 19.5 1.1 0.00082 19.5 1.1 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|435852357|ref|YP_007313943.1| - 0.0065 17.3 5.2 1.2 10.0 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Furin-like_2 PF15913.5 gi|435852357|ref|YP_007313943.1| - 0.016 15.3 2.5 0.59 10.3 0.5 2.0 1 1 1 2 2 2 0 Furin-like repeat, cysteine-rich Fer4_18 PF13746.6 gi|435852357|ref|YP_007313943.1| - 0.099 12.8 7.5 0.22 11.7 7.5 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|435852357|ref|YP_007313943.1| - 0.16 12.0 6.4 1.4 9.0 6.4 2.5 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster FMN_red PF03358.15 gi|435852358|ref|YP_007313944.1| - 1.8e-32 112.3 0.0 2.2e-32 111.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|435852358|ref|YP_007313944.1| - 4.1e-08 33.2 0.0 6.8e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold NAD_binding_1 PF00175.21 gi|435852359|ref|YP_007313945.1| - 2.4e-21 76.4 0.0 3.4e-21 75.9 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|435852359|ref|YP_007313945.1| - 1.2e-13 51.2 0.0 1.9e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 gi|435852359|ref|YP_007313945.1| - 2.1e-06 28.0 0.1 5.4e-05 23.4 0.0 2.2 1 1 1 2 2 2 1 Ferric reductase NAD binding domain FAD_binding_8 PF08022.12 gi|435852359|ref|YP_007313945.1| - 0.067 13.3 0.8 0.16 12.1 0.1 2.1 2 1 0 2 2 2 0 FAD-binding domain Flavoprotein PF02441.19 gi|435852360|ref|YP_007313946.1| - 2.3e-18 66.4 0.0 3.5e-18 65.8 0.0 1.5 1 1 0 1 1 1 1 Flavoprotein DUF429 PF04250.13 gi|435852361|ref|YP_007313947.1| - 3.8e-06 26.8 0.0 2.6e-05 24.1 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF429) Inos-1-P_synth PF01658.17 gi|435852362|ref|YP_007313948.1| - 3.1e-33 114.3 0.0 6.4e-33 113.3 0.0 1.5 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|435852362|ref|YP_007313948.1| - 0.023 14.1 0.0 0.048 13.0 0.0 1.6 2 0 0 2 2 2 0 Myo-inositol-1-phosphate synthase DUF1611_N PF17396.2 gi|435852362|ref|YP_007313948.1| - 0.095 12.9 0.0 0.32 11.3 0.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain Rubrerythrin PF02915.17 gi|435852363|ref|YP_007313949.1| - 1.8e-13 51.0 7.6 1.8e-12 47.8 7.0 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|435852363|ref|YP_007313949.1| - 3.4e-07 30.5 0.8 0.004 17.4 0.4 2.2 2 0 0 2 2 2 2 Ferritin-like domain DUF2383 PF09537.10 gi|435852363|ref|YP_007313949.1| - 0.0029 17.9 0.7 0.13 12.6 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) YozD PF14162.6 gi|435852363|ref|YP_007313949.1| - 0.078 13.3 1.1 0.24 11.7 0.4 2.1 2 0 0 2 2 2 0 YozD-like protein Flavodoxin_1 PF00258.25 gi|435852364|ref|YP_007313950.1| - 1.4e-13 51.2 0.0 2.5e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Lactamase_B PF00753.27 gi|435852364|ref|YP_007313950.1| - 6.6e-08 32.8 0.0 1e-07 32.2 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|435852364|ref|YP_007313950.1| - 8e-05 22.2 0.0 0.00018 21.1 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PGM_PMM_I PF02878.16 gi|435852364|ref|YP_007313950.1| - 0.12 12.1 0.0 0.39 10.4 0.0 1.8 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Dehydratase_MU PF02288.15 gi|435852364|ref|YP_007313950.1| - 0.17 11.8 0.0 1.2 9.0 0.0 2.1 2 0 0 2 2 2 0 Dehydratase medium subunit FeThRed_B PF02943.15 gi|435852365|ref|YP_007313951.1| - 2.3e-18 66.1 1.7 2.6e-18 66.0 1.7 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain PfkB PF00294.24 gi|435852366|ref|YP_007313952.1| - 4.6e-09 36.0 0.0 5.1e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase E1-E2_ATPase PF00122.20 gi|435852367|ref|YP_007313953.1| - 3.6e-55 186.3 4.5 3.6e-55 186.3 4.5 4.3 3 1 2 5 5 5 2 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|435852367|ref|YP_007313953.1| - 1.3e-39 135.8 10.6 1.3e-39 135.8 10.6 2.7 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|435852367|ref|YP_007313953.1| - 6.1e-27 95.3 1.9 1.1e-25 91.2 1.9 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|435852367|ref|YP_007313953.1| - 2.9e-23 81.8 0.0 7.2e-23 80.5 0.0 1.7 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Cation_ATPase_N PF00690.26 gi|435852367|ref|YP_007313953.1| - 4.3e-17 61.6 0.2 1.8e-16 59.6 0.2 2.2 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.7 gi|435852367|ref|YP_007313953.1| - 1.6e-06 28.6 0.3 1.4e-05 25.6 0.3 2.6 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|435852367|ref|YP_007313953.1| - 5.3e-06 26.4 1.0 0.048 13.4 0.0 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase DUF1295 PF06966.12 gi|435852367|ref|YP_007313953.1| - 0.11 12.0 1.9 0.15 11.6 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1295) Peptidase_S8 PF00082.22 gi|435852368|ref|YP_007313954.1| - 4e-48 164.2 17.1 8.2e-48 163.2 17.1 1.5 1 0 0 1 1 1 1 Subtilase family Tk-SP_N-pro PF18237.1 gi|435852368|ref|YP_007313954.1| - 1.7e-07 31.2 0.1 4.2e-07 29.9 0.1 1.6 1 0 0 1 1 1 1 Tk-SP N-propeptide domain Big_1 PF02369.16 gi|435852368|ref|YP_007313954.1| - 9.2e-06 25.6 7.2 9.2e-06 25.6 7.2 3.8 3 1 1 4 4 4 1 Bacterial Ig-like domain (group 1) Inhibitor_I9 PF05922.16 gi|435852368|ref|YP_007313954.1| - 0.0002 22.0 0.0 0.0011 19.6 0.0 2.2 2 0 0 2 2 2 1 Peptidase inhibitor I9 MG4 PF17789.1 gi|435852368|ref|YP_007313954.1| - 0.0083 16.3 0.4 0.023 14.8 0.1 1.9 2 0 0 2 2 2 1 Macroglobulin domain MG4 Invasin_D3 PF09134.10 gi|435852368|ref|YP_007313954.1| - 0.011 16.0 3.1 0.011 16.0 3.1 3.2 3 2 1 4 4 4 0 Invasin, domain 3 CarboxypepD_reg PF13620.6 gi|435852368|ref|YP_007313954.1| - 0.016 15.5 3.2 0.016 15.5 3.2 3.0 3 0 0 3 3 3 0 Carboxypeptidase regulatory-like domain EF-hand_6 PF13405.6 gi|435852368|ref|YP_007313954.1| - 0.17 11.9 0.0 0.43 10.6 0.0 1.6 1 0 0 1 1 1 0 EF-hand domain FUR PF01475.19 gi|435852369|ref|YP_007313955.1| - 3.1e-30 104.8 0.0 4e-30 104.4 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family Prok-RING_4 PF14447.6 gi|435852369|ref|YP_007313955.1| - 0.015 15.2 1.2 0.22 11.4 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 RepL PF05732.11 gi|435852369|ref|YP_007313955.1| - 0.027 13.9 0.0 0.036 13.5 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_5 PF01022.20 gi|435852370|ref|YP_007313956.1| - 3e-14 52.6 0.6 4.9e-14 51.9 0.6 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|435852370|ref|YP_007313956.1| - 4.7e-10 39.4 0.0 6.1e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|435852370|ref|YP_007313956.1| - 0.00052 19.9 0.1 0.00067 19.6 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF2513 PF10711.9 gi|435852370|ref|YP_007313956.1| - 0.0019 18.5 0.1 0.0026 18.0 0.1 1.4 1 1 0 1 1 1 1 Hypothetical protein (DUF2513) DUF505 PF04458.12 gi|435852370|ref|YP_007313956.1| - 0.0034 15.8 0.1 0.0041 15.5 0.1 1.2 1 1 0 1 1 1 1 Protein of unknown function (DUF505) MarR_2 PF12802.7 gi|435852370|ref|YP_007313956.1| - 0.0073 16.2 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|435852370|ref|YP_007313956.1| - 0.03 14.5 0.1 0.053 13.7 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|435852370|ref|YP_007313956.1| - 0.039 13.7 0.1 0.063 13.0 0.1 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|435852370|ref|YP_007313956.1| - 0.045 14.2 0.0 0.079 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.14 gi|435852370|ref|YP_007313956.1| - 0.046 13.7 0.3 0.081 12.9 0.3 1.5 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_12 PF08461.10 gi|435852370|ref|YP_007313956.1| - 0.073 13.0 0.1 0.14 12.1 0.1 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Mrr_N PF14338.6 gi|435852370|ref|YP_007313956.1| - 0.083 13.0 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Mrr N-terminal domain NikR_C PF08753.11 gi|435852371|ref|YP_007313957.1| - 3.5e-33 113.6 4.3 5e-33 113.1 4.3 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|435852371|ref|YP_007313957.1| - 6.5e-08 32.2 0.0 1.3e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|435852371|ref|YP_007313957.1| - 0.004 17.3 0.0 0.013 15.7 0.0 1.8 2 0 0 2 2 2 1 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_8 PF17723.1 gi|435852371|ref|YP_007313957.1| - 0.011 15.9 0.0 0.025 14.7 0.0 1.6 1 1 1 2 2 2 0 Ribbon-Helix-Helix transcriptional regulator family SAICAR_synt PF01259.18 gi|435852372|ref|YP_007313958.1| - 1.7e-59 201.5 1.3 2e-59 201.2 1.3 1.0 1 0 0 1 1 1 1 SAICAR synthetase Amino_oxidase PF01593.24 gi|435852373|ref|YP_007313959.1| - 8.2e-18 64.9 0.0 1.8e-17 63.8 0.0 1.6 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|435852373|ref|YP_007313959.1| - 1.9e-16 60.1 0.1 3.7e-16 59.1 0.1 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|435852373|ref|YP_007313959.1| - 7.5e-10 38.4 0.3 3.8e-07 29.5 0.2 2.8 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 gi|435852373|ref|YP_007313959.1| - 9e-08 31.9 0.0 1.8e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|435852373|ref|YP_007313959.1| - 1.2e-06 28.0 0.2 2.5e-06 27.0 0.2 1.5 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|435852373|ref|YP_007313959.1| - 1.2e-06 28.4 0.1 6e-06 26.1 0.1 2.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|435852373|ref|YP_007313959.1| - 3e-06 26.2 0.6 4.1e-05 22.5 0.1 2.5 2 1 1 3 3 3 1 HI0933-like protein GDI PF00996.18 gi|435852373|ref|YP_007313959.1| - 1.5e-05 23.7 4.8 2.8e-05 22.9 0.5 2.7 3 0 0 3 3 3 1 GDP dissociation inhibitor Thi4 PF01946.17 gi|435852373|ref|YP_007313959.1| - 7.8e-05 22.0 1.0 0.00011 21.5 0.1 1.7 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.27 gi|435852373|ref|YP_007313959.1| - 0.0001 22.8 1.0 0.00061 20.3 0.2 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|435852373|ref|YP_007313959.1| - 0.00024 20.4 0.0 0.0011 18.3 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|435852373|ref|YP_007313959.1| - 0.0026 17.0 0.1 0.038 13.2 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|435852373|ref|YP_007313959.1| - 0.028 13.5 0.0 0.043 12.9 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein Lipoprotein_Ltp PF07553.11 gi|435852373|ref|YP_007313959.1| - 0.031 14.5 0.1 0.073 13.3 0.1 1.6 1 0 0 1 1 1 0 Host cell surface-exposed lipoprotein GIDA PF01134.22 gi|435852373|ref|YP_007313959.1| - 0.035 13.2 0.7 0.091 11.8 0.2 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A MCRA PF06100.11 gi|435852373|ref|YP_007313959.1| - 0.084 11.6 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 MCRA family AlaDh_PNT_C PF01262.21 gi|435852373|ref|YP_007313959.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain PhoU_div PF01865.16 gi|435852374|ref|YP_007313960.1| - 3.6e-51 173.5 1.2 4.1e-51 173.3 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|435852374|ref|YP_007313960.1| - 7.4e-06 26.3 0.6 3.9e-05 24.0 0.1 2.1 2 0 0 2 2 2 1 PhoU domain HSBP1 PF06825.12 gi|435852374|ref|YP_007313960.1| - 0.051 13.4 0.1 0.19 11.6 0.1 1.9 1 0 0 1 1 1 0 Heat shock factor binding protein 1 PHO4 PF01384.20 gi|435852375|ref|YP_007313961.1| - 4.7e-100 334.9 36.1 2.4e-99 332.6 36.1 1.8 1 1 0 1 1 1 1 Phosphate transporter family Nre_N PF04894.12 gi|435852376|ref|YP_007313962.1| - 3.8e-99 331.9 0.0 4.6e-99 331.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|435852376|ref|YP_007313962.1| - 1e-40 138.0 0.0 1.6e-40 137.4 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal HTH_3 PF01381.22 gi|435852377|ref|YP_007313963.1| - 0.00085 19.3 0.0 0.003 17.6 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix Sigma70_r4 PF04545.16 gi|435852377|ref|YP_007313963.1| - 0.0015 18.0 0.0 0.0025 17.3 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|435852377|ref|YP_007313963.1| - 0.0033 17.3 0.1 0.0072 16.3 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|435852377|ref|YP_007313963.1| - 0.0045 16.5 0.0 0.0076 15.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF1284 PF06935.11 gi|435852377|ref|YP_007313963.1| - 0.047 14.1 1.1 0.055 13.9 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1284) KORA PF16509.5 gi|435852377|ref|YP_007313963.1| - 0.052 13.8 0.1 0.13 12.6 0.0 1.7 1 1 0 1 1 1 0 TrfB plasmid transcriptional repressor MarR_2 PF12802.7 gi|435852377|ref|YP_007313963.1| - 0.062 13.2 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_37 PF13744.6 gi|435852377|ref|YP_007313963.1| - 0.093 12.7 0.1 0.2 11.7 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|435852377|ref|YP_007313963.1| - 0.1 12.4 0.1 0.24 11.3 0.1 1.7 1 1 0 1 1 1 0 Homeodomain-like domain NifU_N PF01592.16 gi|435852378|ref|YP_007313964.1| - 3.5e-43 146.8 0.1 3.8e-43 146.7 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain DUF1858 PF08984.11 gi|435852378|ref|YP_007313964.1| - 0.0028 17.8 0.2 0.062 13.5 0.2 2.8 2 1 0 2 2 2 1 Domain of unknown function (DUF1858) SARS_lipid_bind PF09399.10 gi|435852378|ref|YP_007313964.1| - 0.14 12.3 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 SARS lipid binding protein Aminotran_5 PF00266.19 gi|435852379|ref|YP_007313965.1| - 1.4e-83 280.9 0.1 1.8e-83 280.5 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-V TTRAP PF14203.6 gi|435852379|ref|YP_007313965.1| - 0.94 9.5 4.4 9.2 6.3 0.1 2.9 3 0 0 3 3 3 0 Putative tranposon-transfer assisting protein SUI1 PF01253.22 gi|435852380|ref|YP_007313966.1| - 4.2e-20 72.1 0.0 5.1e-20 71.8 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.15 gi|435852380|ref|YP_007313966.1| - 0.0082 15.9 0.9 0.011 15.5 0.9 1.2 1 0 0 1 1 1 1 DTW domain DUF192 PF02643.15 gi|435852381|ref|YP_007313967.1| - 2.3e-24 85.4 0.0 2.6e-24 85.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 AIRS PF00586.24 gi|435852382|ref|YP_007313968.1| - 3.7e-45 152.5 0.7 4.8e-23 81.6 0.1 3.5 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|435852382|ref|YP_007313968.1| - 1.7e-42 145.2 4.0 1.7e-30 106.2 0.2 2.2 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|435852382|ref|YP_007313968.1| - 4.1e-07 30.4 0.1 9.7e-07 29.2 0.1 1.7 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain DUF378 PF04070.12 gi|435852383|ref|YP_007313969.1| - 4.2e-21 74.6 12.9 4.5e-21 74.5 12.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF378) Fer4_16 PF13484.6 gi|435852384|ref|YP_007313970.1| - 4.9e-06 27.4 2.8 8.9e-06 26.6 2.8 1.4 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|435852384|ref|YP_007313970.1| - 0.001 19.6 3.4 0.003 18.1 3.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435852384|ref|YP_007313970.1| - 0.0047 17.1 2.6 0.61 10.3 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435852384|ref|YP_007313970.1| - 0.015 16.2 10.2 0.11 13.4 2.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|435852384|ref|YP_007313970.1| - 0.018 14.8 0.4 0.018 14.8 0.4 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|435852384|ref|YP_007313970.1| - 0.027 14.5 10.4 0.029 14.4 0.9 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|435852384|ref|YP_007313970.1| - 0.029 14.5 0.3 0.062 13.5 0.3 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Dehalogenase PF13486.6 gi|435852384|ref|YP_007313970.1| - 0.15 11.4 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 Reductive dehalogenase subunit Fer4_10 PF13237.6 gi|435852384|ref|YP_007313970.1| - 1 9.5 7.6 11 6.3 0.8 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Antistasin PF02822.14 gi|435852384|ref|YP_007313970.1| - 1.3 9.7 8.3 2.9 8.6 0.6 2.4 2 0 0 2 2 2 0 Antistasin family AAA PF00004.29 gi|435852385|ref|YP_007313971.1| - 1e-100 333.3 0.0 1.9e-49 167.4 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|435852385|ref|YP_007313971.1| - 8e-33 112.5 0.0 3.1e-32 110.6 0.0 2.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|435852385|ref|YP_007313971.1| - 9.4e-30 102.2 1.4 5.2e-17 61.4 0.3 2.7 2 0 0 2 2 2 2 AAA+ lid domain AAA_2 PF07724.14 gi|435852385|ref|YP_007313971.1| - 2.7e-16 60.2 0.0 2.4e-07 31.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|435852385|ref|YP_007313971.1| - 4.1e-14 52.7 0.3 7.5e-06 26.0 0.1 3.3 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|435852385|ref|YP_007313971.1| - 5.7e-14 52.2 0.0 2.7e-06 27.2 0.0 3.0 2 2 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|435852385|ref|YP_007313971.1| - 8.1e-13 49.1 0.0 2.5e-05 24.7 0.0 3.2 2 1 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.17 gi|435852385|ref|YP_007313971.1| - 1.1e-12 47.6 0.1 7.7e-12 44.8 0.1 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_14 PF13173.6 gi|435852385|ref|YP_007313971.1| - 2.8e-11 43.6 0.0 2e-05 24.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|435852385|ref|YP_007313971.1| - 1.1e-10 41.9 0.4 0.0075 16.5 0.0 4.1 2 2 2 4 4 4 2 AAA domain AAA_18 PF13238.6 gi|435852385|ref|YP_007313971.1| - 4.7e-09 36.9 0.0 0.0069 16.9 0.0 3.0 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|435852385|ref|YP_007313971.1| - 8.4e-09 35.1 0.0 0.00052 19.3 0.0 2.6 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|435852385|ref|YP_007313971.1| - 5.7e-08 33.0 0.0 0.0075 16.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|435852385|ref|YP_007313971.1| - 1.4e-07 31.5 0.0 0.013 15.2 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_25 PF13481.6 gi|435852385|ref|YP_007313971.1| - 2.9e-07 30.3 1.0 0.27 10.8 0.0 4.3 4 0 0 4 4 4 2 AAA domain Sigma54_activat PF00158.26 gi|435852385|ref|YP_007313971.1| - 3.4e-07 30.1 0.0 0.1 12.3 0.0 3.6 2 1 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|435852385|ref|YP_007313971.1| - 1.9e-06 27.4 0.2 0.069 12.5 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|435852385|ref|YP_007313971.1| - 2e-06 27.4 0.0 0.031 13.8 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_28 PF13521.6 gi|435852385|ref|YP_007313971.1| - 2.8e-06 27.7 0.0 0.046 14.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|435852385|ref|YP_007313971.1| - 5.6e-06 26.7 0.0 0.15 12.5 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Zeta_toxin PF06414.12 gi|435852385|ref|YP_007313971.1| - 5.7e-06 25.7 0.1 0.067 12.5 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_24 PF13479.6 gi|435852385|ref|YP_007313971.1| - 7.2e-06 25.9 0.0 0.032 14.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.27 gi|435852385|ref|YP_007313971.1| - 1.7e-05 25.4 0.0 0.29 11.6 0.0 2.7 3 0 0 3 3 2 2 ABC transporter ATPase PF06745.13 gi|435852385|ref|YP_007313971.1| - 4.2e-05 23.0 1.0 0.44 9.9 0.0 3.6 2 1 1 3 3 3 1 KaiC ATPase_2 PF01637.18 gi|435852385|ref|YP_007313971.1| - 5.3e-05 23.2 0.2 0.055 13.4 0.0 3.4 2 1 1 3 3 3 1 ATPase domain predominantly from Archaea AAA_3 PF07726.11 gi|435852385|ref|YP_007313971.1| - 6.6e-05 22.8 0.0 0.3 10.9 0.0 2.8 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 gi|435852385|ref|YP_007313971.1| - 6.7e-05 23.3 0.0 0.58 10.6 0.0 3.6 3 1 1 4 4 3 1 AAA domain PhoH PF02562.16 gi|435852385|ref|YP_007313971.1| - 6.9e-05 22.4 0.1 0.59 9.6 0.0 3.0 3 0 0 3 3 3 2 PhoH-like protein Vps4_C PF09336.10 gi|435852385|ref|YP_007313971.1| - 0.00011 22.1 0.1 0.58 10.2 0.0 3.3 3 0 0 3 3 3 1 Vps4 C terminal oligomerisation domain AAA_19 PF13245.6 gi|435852385|ref|YP_007313971.1| - 0.00017 21.9 0.3 1.5 9.1 0.0 3.3 4 0 0 4 4 2 2 AAA domain Guanylate_kin PF00625.21 gi|435852385|ref|YP_007313971.1| - 0.00018 21.3 0.6 3.7 7.2 0.0 4.3 2 2 2 4 4 4 0 Guanylate kinase DUF2075 PF09848.9 gi|435852385|ref|YP_007313971.1| - 0.00018 20.8 0.0 0.29 10.3 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Parvo_NS1 PF01057.17 gi|435852385|ref|YP_007313971.1| - 0.00036 19.7 0.1 0.31 10.1 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 ATP-synt_ab PF00006.25 gi|435852385|ref|YP_007313971.1| - 0.0005 19.8 0.0 0.42 10.2 0.0 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain TsaE PF02367.17 gi|435852385|ref|YP_007313971.1| - 0.00054 20.0 0.0 1.4 8.9 0.0 2.8 2 1 1 3 3 3 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF815 PF05673.13 gi|435852385|ref|YP_007313971.1| - 0.00054 19.2 0.0 0.87 8.7 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|435852385|ref|YP_007313971.1| - 0.00077 18.7 0.0 0.53 9.4 0.0 2.8 3 0 0 3 3 3 1 NB-ARC domain AAA_11 PF13086.6 gi|435852385|ref|YP_007313971.1| - 0.00082 19.2 0.0 0.79 9.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|435852385|ref|YP_007313971.1| - 0.00094 19.3 0.0 0.82 9.8 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_30 PF13604.6 gi|435852385|ref|YP_007313971.1| - 0.0012 18.6 1.3 0.94 9.2 0.4 3.0 2 1 0 2 2 2 1 AAA domain Cytidylate_kin PF02224.18 gi|435852385|ref|YP_007313971.1| - 0.0041 16.9 0.4 5 6.8 0.0 3.1 3 0 0 3 3 3 0 Cytidylate kinase Bac_DnaA PF00308.18 gi|435852385|ref|YP_007313971.1| - 0.0042 17.0 0.0 0.46 10.3 0.0 2.4 2 0 0 2 2 2 1 Bacterial dnaA protein Viral_helicase1 PF01443.18 gi|435852385|ref|YP_007313971.1| - 0.0056 16.5 0.0 0.78 9.4 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase ResIII PF04851.15 gi|435852385|ref|YP_007313971.1| - 0.0067 16.4 0.0 5.7 6.9 0.0 2.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit NTPase_1 PF03266.15 gi|435852385|ref|YP_007313971.1| - 0.008 16.1 2.6 8.6 6.2 0.0 4.0 3 1 1 4 4 3 0 NTPase NACHT PF05729.12 gi|435852385|ref|YP_007313971.1| - 0.011 15.6 0.1 5.9 6.8 0.0 3.2 4 0 0 4 4 2 0 NACHT domain Rad17 PF03215.15 gi|435852385|ref|YP_007313971.1| - 0.014 15.4 0.0 0.63 9.9 0.0 2.6 2 1 0 2 2 2 0 Rad17 P-loop domain T2SSE PF00437.20 gi|435852385|ref|YP_007313971.1| - 0.02 13.9 0.0 2.8 6.9 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein TniB PF05621.11 gi|435852385|ref|YP_007313971.1| - 0.026 14.0 0.0 9.3 5.6 0.0 3.4 4 0 0 4 4 4 0 Bacterial TniB protein SKI PF01202.22 gi|435852385|ref|YP_007313971.1| - 0.046 13.8 0.0 11 6.1 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase IPT PF01745.16 gi|435852385|ref|YP_007313971.1| - 0.053 12.9 0.2 3.4 7.0 0.0 2.9 3 0 0 3 3 2 0 Isopentenyl transferase LID PF17916.1 gi|435852385|ref|YP_007313971.1| - 0.059 13.0 0.1 0.19 11.4 0.1 1.8 1 0 0 1 1 1 0 LIM interaction domain (LID) Torsin PF06309.11 gi|435852385|ref|YP_007313971.1| - 0.066 13.3 0.0 8.1 6.6 0.0 2.4 2 0 0 2 2 2 0 Torsin Hydin_ADK PF17213.3 gi|435852385|ref|YP_007313971.1| - 0.075 13.3 0.2 15 5.8 0.2 2.3 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain AFG1_ATPase PF03969.16 gi|435852385|ref|YP_007313971.1| - 0.1 11.5 0.0 8.8 5.1 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase PduV-EutP PF10662.9 gi|435852385|ref|YP_007313971.1| - 0.18 11.5 0.0 14 5.4 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation PRC PF05239.16 gi|435852386|ref|YP_007313972.1| - 1.5e-12 47.4 0.1 1.8e-12 47.2 0.1 1.0 1 0 0 1 1 1 1 PRC-barrel domain Hydrolase_3 PF08282.12 gi|435852387|ref|YP_007313973.1| - 2.2e-27 96.4 0.2 8.3e-19 68.3 0.0 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|435852387|ref|YP_007313973.1| - 5.8e-11 43.1 1.0 3e-06 27.7 0.0 3.1 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|435852387|ref|YP_007313973.1| - 6e-08 32.5 0.0 7.1e-07 29.0 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|435852387|ref|YP_007313973.1| - 0.00016 22.2 1.9 0.043 14.2 0.0 2.8 2 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Rad51 PF08423.11 gi|435852388|ref|YP_007313974.1| - 1.8e-83 279.7 0.0 2.2e-83 279.4 0.0 1.0 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|435852388|ref|YP_007313974.1| - 1.8e-13 50.8 2.1 3.4e-13 50.0 0.7 2.1 3 0 0 3 3 2 1 Helix-hairpin-helix domain RecA PF00154.21 gi|435852388|ref|YP_007313974.1| - 6.7e-11 42.2 0.1 2.6e-08 33.7 0.0 2.4 1 1 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|435852388|ref|YP_007313974.1| - 9.5e-08 31.7 0.1 1.4e-07 31.2 0.1 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|435852388|ref|YP_007313974.1| - 4e-07 29.8 0.0 5.7e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain HHH_2 PF12826.7 gi|435852388|ref|YP_007313974.1| - 2.2e-05 24.5 0.4 5.8e-05 23.1 0.4 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|435852388|ref|YP_007313974.1| - 0.00022 21.0 0.1 0.0012 18.7 0.0 2.3 3 0 0 3 3 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|435852388|ref|YP_007313974.1| - 0.0012 18.6 0.6 0.25 11.3 0.4 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif AAA_24 PF13479.6 gi|435852388|ref|YP_007313974.1| - 0.0016 18.2 0.0 0.0036 17.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|435852388|ref|YP_007313974.1| - 0.0034 17.3 0.0 0.011 15.7 0.0 1.8 2 0 0 2 2 2 1 NACHT domain Cdd1 PF11731.8 gi|435852388|ref|YP_007313974.1| - 0.0063 16.7 0.0 0.016 15.5 0.0 1.6 1 1 0 1 1 1 1 Pathogenicity locus AAA_22 PF13401.6 gi|435852388|ref|YP_007313974.1| - 0.012 15.9 0.0 0.025 14.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain RNA_pol_RpbG PF16992.5 gi|435852388|ref|YP_007313974.1| - 0.021 14.9 0.0 0.037 14.1 0.0 1.3 1 0 0 1 1 1 0 DNA-directed RNA polymerase, subunit G CobU PF02283.16 gi|435852388|ref|YP_007313974.1| - 0.023 14.3 0.1 0.077 12.6 0.0 1.8 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA PF00004.29 gi|435852388|ref|YP_007313974.1| - 0.056 13.9 0.1 0.28 11.6 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|435852388|ref|YP_007313974.1| - 0.076 12.9 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|435852388|ref|YP_007313974.1| - 0.098 13.2 0.0 0.27 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF4332 PF14229.6 gi|435852388|ref|YP_007313974.1| - 0.13 12.5 0.2 0.32 11.2 0.0 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4332) CTP_transf_like PF01467.26 gi|435852389|ref|YP_007313975.1| - 1.8e-10 41.2 0.1 2.3e-10 40.8 0.1 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|435852389|ref|YP_007313975.1| - 0.0007 19.5 0.0 0.0034 17.3 0.0 1.9 2 0 0 2 2 2 1 FAD synthetase DUF4351 PF14261.6 gi|435852390|ref|YP_007313976.1| - 7e-05 22.8 3.4 0.00077 19.5 0.2 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF4351) AP_endonuc_2 PF01261.24 gi|435852391|ref|YP_007313977.1| - 1.6e-14 53.8 0.0 1.9e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel SPOUT_MTase_2 PF14419.6 gi|435852391|ref|YP_007313977.1| - 0.16 11.4 0.0 0.34 10.3 0.0 1.5 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP ABC_tran PF00005.27 gi|435852392|ref|YP_007313978.1| - 4.2e-30 105.1 0.0 7e-30 104.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435852392|ref|YP_007313978.1| - 5.3e-11 42.9 0.3 8.6e-06 25.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|435852392|ref|YP_007313978.1| - 2.5e-06 27.1 0.0 1.1e-05 25.0 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|435852392|ref|YP_007313978.1| - 0.00015 21.5 0.1 0.0003 20.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|435852392|ref|YP_007313978.1| - 0.012 15.7 0.1 0.058 13.5 0.0 2.2 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|435852392|ref|YP_007313978.1| - 0.015 15.1 0.3 0.053 13.2 0.2 1.8 2 0 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|435852392|ref|YP_007313978.1| - 0.051 13.5 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|435852392|ref|YP_007313978.1| - 0.051 14.1 0.0 0.096 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|435852392|ref|YP_007313978.1| - 0.11 12.2 0.1 0.6 9.8 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|435852392|ref|YP_007313978.1| - 0.17 11.4 0.0 0.93 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain CbiQ PF02361.16 gi|435852393|ref|YP_007313979.1| - 4e-44 150.8 5.8 6.4e-44 150.2 5.8 1.3 1 0 0 1 1 1 1 Cobalt transport protein FGFR3_TM PF18123.1 gi|435852393|ref|YP_007313979.1| - 0.23 11.0 0.2 0.23 11.0 0.2 2.8 3 0 0 3 3 3 0 Fibroblast growth factor receptor 3 transmembrane domain CbiN PF02553.15 gi|435852394|ref|YP_007313980.1| - 4.3e-24 84.3 0.4 5.4e-24 83.9 0.4 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN Phage_Coat_B PF05356.11 gi|435852394|ref|YP_007313980.1| - 0.047 13.6 0.8 0.097 12.6 0.8 1.5 1 0 0 1 1 1 0 Phage Coat protein B CbiM PF01891.16 gi|435852395|ref|YP_007313981.1| - 3.4e-52 177.3 21.6 3.9e-52 177.1 21.6 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region TP_methylase PF00590.20 gi|435852396|ref|YP_007313982.1| - 3.9e-19 69.4 0.1 3.9e-18 66.2 0.1 2.0 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiD PF01888.17 gi|435852397|ref|YP_007313983.1| - 2.5e-50 171.1 1.3 3.5e-50 170.7 1.3 1.2 1 0 0 1 1 1 1 CbiD sCache_like PF16736.5 gi|435852397|ref|YP_007313983.1| - 0.035 14.2 0.0 0.07 13.2 0.0 1.5 1 0 0 1 1 1 0 Single Cache-like DNA_mis_repair PF01119.19 gi|435852398|ref|YP_007313984.1| - 9.7e-38 128.5 0.0 1.7e-37 127.7 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain MutL_C PF08676.11 gi|435852398|ref|YP_007313984.1| - 1.7e-34 118.7 0.0 3.7e-34 117.6 0.0 1.5 1 0 0 1 1 1 1 MutL C terminal dimerisation domain HATPase_c_3 PF13589.6 gi|435852398|ref|YP_007313984.1| - 1.8e-13 50.5 1.1 2.6e-13 50.0 0.3 1.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|435852398|ref|YP_007313984.1| - 5.9e-08 33.2 0.4 5.5e-07 30.1 0.1 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YokU PF14122.6 gi|435852398|ref|YP_007313984.1| - 0.011 15.7 0.0 0.03 14.3 0.0 1.7 1 0 0 1 1 1 0 YokU-like protein, putative antitoxin GlcNAc_2-epim PF07221.11 gi|435852398|ref|YP_007313984.1| - 0.17 11.1 0.0 0.3 10.3 0.0 1.3 1 0 0 1 1 1 0 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) AIDA PF16168.5 gi|435852398|ref|YP_007313984.1| - 0.33 11.1 1.3 0.66 10.1 1.3 1.5 1 0 0 1 1 1 0 Adhesin of bacterial autotransporter system, probable stalk MutS_V PF00488.21 gi|435852399|ref|YP_007313985.1| - 2.4e-84 282.0 0.3 5.2e-84 281.0 0.3 1.6 1 0 0 1 1 1 1 MutS domain V MutS_I PF01624.20 gi|435852399|ref|YP_007313985.1| - 2.4e-42 143.8 0.0 5.3e-42 142.6 0.0 1.7 1 0 0 1 1 1 1 MutS domain I MutS_III PF05192.18 gi|435852399|ref|YP_007313985.1| - 3.4e-39 135.0 0.1 6.4e-39 134.2 0.1 1.5 1 0 0 1 1 1 1 MutS domain III MutS_IV PF05190.18 gi|435852399|ref|YP_007313985.1| - 6e-32 109.9 0.5 1.4e-31 108.7 0.5 1.7 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|435852399|ref|YP_007313985.1| - 1.2e-26 93.6 0.0 3e-26 92.3 0.0 1.7 1 0 0 1 1 1 1 MutS domain II AAA_27 PF13514.6 gi|435852399|ref|YP_007313985.1| - 0.014 15.0 0.0 0.034 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|435852399|ref|YP_007313985.1| - 0.035 14.6 0.3 0.12 12.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|435852399|ref|YP_007313985.1| - 0.074 12.8 1.8 0.078 12.7 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain PBP_like PF12727.7 gi|435852400|ref|YP_007313986.1| - 2.7e-43 147.4 0.0 4.3e-43 146.7 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|435852400|ref|YP_007313986.1| - 2e-40 138.1 0.7 3.4e-40 137.4 0.7 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|435852400|ref|YP_007313986.1| - 8.5e-26 90.3 0.1 2.5e-25 88.8 0.1 1.8 2 0 0 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|435852400|ref|YP_007313986.1| - 3.2e-13 49.6 0.0 8.2e-13 48.3 0.0 1.8 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) Phosphonate-bd PF12974.7 gi|435852400|ref|YP_007313986.1| - 0.00026 20.7 0.0 0.00054 19.6 0.0 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 gi|435852400|ref|YP_007313986.1| - 0.0028 17.6 0.0 0.0083 16.1 0.0 1.8 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_3 PF16868.5 gi|435852400|ref|YP_007313986.1| - 0.0044 16.5 0.0 0.0095 15.4 0.0 1.5 1 1 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.20 gi|435852400|ref|YP_007313986.1| - 0.17 11.3 0.0 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 PBP_like_2 PF12849.7 gi|435852400|ref|YP_007313986.1| - 0.19 11.4 0.2 4.1 7.0 0.0 2.4 2 1 0 2 2 2 0 PBP superfamily domain DUF4271 PF14093.6 gi|435852401|ref|YP_007313987.1| - 0.0056 16.6 0.6 0.0057 16.6 0.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4271) SafA PF17073.5 gi|435852401|ref|YP_007313987.1| - 0.061 13.3 0.2 0.081 12.9 0.2 1.2 1 0 0 1 1 1 0 Two-component-system connector protein Aminotran_4 PF01063.19 gi|435852402|ref|YP_007313988.1| - 1.2e-55 188.8 0.0 1.5e-55 188.5 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV URO-D PF01208.17 gi|435852403|ref|YP_007313989.1| - 1.5e-63 215.1 0.0 1.7e-63 214.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) ABC2_membrane PF01061.24 gi|435852404|ref|YP_007313990.1| - 6.3e-40 136.8 22.6 6.3e-40 136.8 22.6 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|435852404|ref|YP_007313990.1| - 7e-15 55.0 31.3 7e-15 55.0 31.3 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|435852404|ref|YP_007313990.1| - 0.0029 16.9 17.9 0.0029 16.9 17.9 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF3464 PF11947.8 gi|435852404|ref|YP_007313990.1| - 0.068 12.9 0.2 0.068 12.9 0.2 2.6 2 1 1 3 3 3 0 Photosynthesis affected mutant 68 ABC_tran PF00005.27 gi|435852405|ref|YP_007313991.1| - 1.1e-33 116.6 0.0 2.3e-33 115.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435852405|ref|YP_007313991.1| - 2.2e-11 44.1 1.2 2.6e-07 30.8 0.2 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|435852405|ref|YP_007313991.1| - 5.5e-10 39.8 0.8 1.1e-09 38.9 0.2 1.8 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|435852405|ref|YP_007313991.1| - 5.2e-06 26.4 0.9 0.013 15.2 0.1 2.4 2 1 1 3 3 3 2 AAA ATPase domain AAA_23 PF13476.6 gi|435852405|ref|YP_007313991.1| - 1.7e-05 25.4 1.3 5.4e-05 23.8 1.3 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|435852405|ref|YP_007313991.1| - 2.7e-05 24.6 0.1 0.00048 20.6 0.1 2.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|435852405|ref|YP_007313991.1| - 0.00066 19.2 0.3 0.0076 15.7 0.1 2.5 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|435852405|ref|YP_007313991.1| - 0.0049 16.6 0.1 0.009 15.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|435852405|ref|YP_007313991.1| - 0.011 16.1 0.9 0.068 13.4 0.9 2.1 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|435852405|ref|YP_007313991.1| - 0.012 15.5 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain G-alpha PF00503.20 gi|435852405|ref|YP_007313991.1| - 0.014 14.6 0.1 0.016 14.4 0.1 1.2 1 0 0 1 1 1 0 G-protein alpha subunit SRP54 PF00448.22 gi|435852405|ref|YP_007313991.1| - 0.018 14.7 0.1 0.04 13.5 0.1 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|435852405|ref|YP_007313991.1| - 0.02 14.6 0.3 0.83 9.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|435852405|ref|YP_007313991.1| - 0.02 15.5 0.2 0.054 14.0 0.2 2.0 1 1 0 1 1 1 0 AAA domain Nbl1_Borealin_N PF10444.9 gi|435852405|ref|YP_007313991.1| - 0.024 14.3 0.5 0.087 12.5 0.2 2.1 2 0 0 2 2 2 0 Nbl1 / Borealin N terminal MukB PF04310.12 gi|435852405|ref|YP_007313991.1| - 0.048 13.5 0.0 0.13 12.0 0.0 1.8 1 0 0 1 1 1 0 MukB N-terminal T3RM_EcoP15I_C PF18273.1 gi|435852405|ref|YP_007313991.1| - 0.075 13.3 0.7 0.18 12.1 0.2 1.9 2 0 0 2 2 2 0 Type III R-M EcoP15I C-terminal domain TsaE PF02367.17 gi|435852405|ref|YP_007313991.1| - 0.11 12.5 0.3 0.71 9.9 0.3 2.2 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|435852405|ref|YP_007313991.1| - 0.12 11.9 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|435852405|ref|YP_007313991.1| - 0.15 11.8 0.0 0.31 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain TetR_N PF00440.23 gi|435852406|ref|YP_007313992.1| - 7.8e-15 54.4 0.2 1.3e-14 53.7 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|435852406|ref|YP_007313992.1| - 0.00094 19.4 0.1 0.0015 18.8 0.1 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 gi|435852406|ref|YP_007313992.1| - 0.0033 17.6 1.6 0.0042 17.2 0.8 1.7 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase PRESAN PF09687.10 gi|435852406|ref|YP_007313992.1| - 0.026 15.1 4.4 0.53 10.9 2.0 2.3 1 1 1 2 2 2 0 Plasmodium RESA N-terminal TetR_C_17 PF17922.1 gi|435852406|ref|YP_007313992.1| - 0.034 14.3 0.2 0.071 13.2 0.2 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain NEL PF14496.6 gi|435852407|ref|YP_007313993.1| - 0.0074 15.7 0.3 0.0095 15.4 0.3 1.1 1 0 0 1 1 1 1 C-terminal novel E3 ligase, LRR-interacting Cytochrom_B562 PF07361.11 gi|435852407|ref|YP_007313993.1| - 0.028 15.1 0.2 0.034 14.8 0.2 1.2 1 0 0 1 1 1 0 Cytochrome b562 AlaDh_PNT_C PF01262.21 gi|435852407|ref|YP_007313993.1| - 0.036 13.4 0.0 0.058 12.7 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ParE-like_toxin PF15781.5 gi|435852407|ref|YP_007313993.1| - 0.11 12.4 0.2 0.21 11.6 0.0 1.5 2 0 0 2 2 2 0 ParE-like toxin of type II bacterial toxin-antitoxin system PDT PF00800.18 gi|435852407|ref|YP_007313993.1| - 0.15 11.9 0.0 0.18 11.6 0.0 1.1 1 0 0 1 1 1 0 Prephenate dehydratase Cpn60_TCP1 PF00118.24 gi|435852408|ref|YP_007313994.1| - 1.8e-177 590.9 18.6 2.2e-177 590.6 18.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family BioY PF02632.14 gi|435852409|ref|YP_007313995.1| - 1.5e-41 141.6 20.2 2.3e-41 141.0 20.2 1.2 1 0 0 1 1 1 1 BioY family COX7a PF02238.15 gi|435852409|ref|YP_007313995.1| - 0.11 12.9 0.8 0.11 12.9 0.8 3.2 3 0 0 3 3 3 0 Cytochrome c oxidase subunit VII Pox_A9 PF04835.12 gi|435852409|ref|YP_007313995.1| - 0.16 12.1 0.2 0.16 12.1 0.2 2.6 3 0 0 3 3 3 0 A9 protein conserved region ABC_tran PF00005.27 gi|435852410|ref|YP_007313996.1| - 7.4e-27 94.5 0.0 1e-26 94.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435852410|ref|YP_007313996.1| - 1.1e-14 55.0 0.0 7.8e-07 29.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|435852410|ref|YP_007313996.1| - 4.3e-11 42.7 0.2 1e-08 34.9 0.2 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|435852410|ref|YP_007313996.1| - 4.6e-06 27.0 0.0 1.9e-05 24.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|435852410|ref|YP_007313996.1| - 3.8e-05 23.7 0.0 0.0027 17.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|435852410|ref|YP_007313996.1| - 0.00034 20.3 0.1 0.00074 19.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|435852410|ref|YP_007313996.1| - 0.00039 19.9 0.1 0.024 14.0 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|435852410|ref|YP_007313996.1| - 0.0021 18.4 0.0 0.0035 17.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|435852410|ref|YP_007313996.1| - 0.0024 17.6 0.0 0.0032 17.2 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|435852410|ref|YP_007313996.1| - 0.0033 17.4 0.0 0.0062 16.5 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_33 PF13671.6 gi|435852410|ref|YP_007313996.1| - 0.0045 17.1 0.0 0.0064 16.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|435852410|ref|YP_007313996.1| - 0.0058 17.1 0.0 0.0094 16.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|435852410|ref|YP_007313996.1| - 0.0089 15.8 0.0 0.016 14.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|435852410|ref|YP_007313996.1| - 0.017 15.4 0.4 0.49 10.7 0.4 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.6 gi|435852410|ref|YP_007313996.1| - 0.017 15.7 0.0 0.03 14.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|435852410|ref|YP_007313996.1| - 0.021 14.4 0.0 0.066 12.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|435852410|ref|YP_007313996.1| - 0.031 13.9 0.0 0.05 13.2 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|435852410|ref|YP_007313996.1| - 0.033 14.6 0.1 0.43 11.0 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|435852410|ref|YP_007313996.1| - 0.034 12.8 0.0 0.041 12.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|435852410|ref|YP_007313996.1| - 0.038 13.6 0.0 0.062 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|435852410|ref|YP_007313996.1| - 0.055 13.4 0.1 0.18 11.7 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_7 PF12775.7 gi|435852410|ref|YP_007313996.1| - 0.067 12.7 0.0 0.15 11.5 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|435852410|ref|YP_007313996.1| - 0.074 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|435852410|ref|YP_007313996.1| - 0.089 13.0 0.1 0.14 12.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|435852410|ref|YP_007313996.1| - 0.16 12.4 0.0 0.27 11.6 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ATP_bind_1 PF03029.17 gi|435852410|ref|YP_007313996.1| - 0.16 11.7 0.1 0.27 11.0 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_14 PF13173.6 gi|435852410|ref|YP_007313996.1| - 0.17 11.9 0.0 0.93 9.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 gi|435852410|ref|YP_007313996.1| - 0.21 10.4 0.0 0.31 9.8 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) ABC_tran PF00005.27 gi|435852411|ref|YP_007313997.1| - 6.5e-26 91.5 0.0 9.7e-26 90.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435852411|ref|YP_007313997.1| - 2.9e-12 47.0 0.3 1.3e-09 38.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|435852411|ref|YP_007313997.1| - 0.00018 21.2 0.0 0.00033 20.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|435852411|ref|YP_007313997.1| - 0.0005 19.6 0.0 0.33 10.4 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|435852411|ref|YP_007313997.1| - 0.00051 20.3 0.0 0.0023 18.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|435852411|ref|YP_007313997.1| - 0.0015 18.4 0.0 0.01 15.7 0.0 1.9 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|435852411|ref|YP_007313997.1| - 0.002 18.6 0.0 0.0029 18.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 gi|435852411|ref|YP_007313997.1| - 0.002 18.3 0.0 0.0046 17.2 0.0 1.7 2 0 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|435852411|ref|YP_007313997.1| - 0.016 15.4 0.0 0.041 14.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|435852411|ref|YP_007313997.1| - 0.022 14.1 0.0 0.039 13.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|435852411|ref|YP_007313997.1| - 0.034 14.1 0.0 0.057 13.3 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|435852411|ref|YP_007313997.1| - 0.089 12.4 0.0 14 5.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain dNK PF01712.19 gi|435852411|ref|YP_007313997.1| - 0.093 12.6 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Deoxynucleoside kinase AAA_24 PF13479.6 gi|435852411|ref|YP_007313997.1| - 0.1 12.3 0.3 0.55 9.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|435852411|ref|YP_007313997.1| - 0.11 12.2 0.0 0.54 10.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|435852411|ref|YP_007313997.1| - 0.15 12.1 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_15 PF13175.6 gi|435852411|ref|YP_007313997.1| - 0.22 11.2 0.0 2.9 7.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain CbiQ PF02361.16 gi|435852412|ref|YP_007313998.1| - 4.7e-39 134.3 12.0 6.7e-39 133.8 12.0 1.2 1 0 0 1 1 1 1 Cobalt transport protein TOBE PF03459.17 gi|435852413|ref|YP_007313999.1| - 2.4e-15 56.5 1.2 1.6e-14 53.9 0.5 2.1 2 0 0 2 2 2 1 TOBE domain HTH_1 PF00126.27 gi|435852413|ref|YP_007313999.1| - 2.3e-10 40.2 0.2 5.3e-10 39.1 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_3 PF01381.22 gi|435852414|ref|YP_007314000.1| - 2.5e-13 49.8 0.1 2.9e-13 49.7 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|435852414|ref|YP_007314000.1| - 2.3e-08 33.9 0.1 2.5e-08 33.8 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|435852414|ref|YP_007314000.1| - 1.1e-05 25.7 0.0 1.3e-05 25.4 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|435852414|ref|YP_007314000.1| - 2.7e-05 24.5 0.0 3e-05 24.4 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain MqsA_antitoxin PF15731.5 gi|435852414|ref|YP_007314000.1| - 0.054 13.6 0.0 0.057 13.5 0.0 1.1 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_25 PF13413.6 gi|435852414|ref|YP_007314000.1| - 0.065 13.1 0.0 0.078 12.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain ABC_tran PF00005.27 gi|435852415|ref|YP_007314001.1| - 5.7e-32 111.1 0.0 1.1e-31 110.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|435852415|ref|YP_007314001.1| - 1.9e-07 31.2 0.8 0.005 16.7 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|435852415|ref|YP_007314001.1| - 0.00013 22.1 0.0 0.00034 20.7 0.0 1.8 2 0 0 2 2 1 1 TOBE domain AAA_23 PF13476.6 gi|435852415|ref|YP_007314001.1| - 0.00016 22.3 1.0 0.00037 21.1 1.0 1.8 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|435852415|ref|YP_007314001.1| - 0.00018 21.0 0.1 0.012 15.0 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|435852415|ref|YP_007314001.1| - 0.0021 18.4 1.0 0.013 15.8 1.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|435852415|ref|YP_007314001.1| - 0.0048 17.3 0.0 0.0077 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|435852415|ref|YP_007314001.1| - 0.033 13.9 0.1 0.068 12.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|435852415|ref|YP_007314001.1| - 0.042 13.8 0.1 0.093 12.6 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|435852415|ref|YP_007314001.1| - 0.064 13.0 0.1 0.14 11.9 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|435852415|ref|YP_007314001.1| - 0.071 12.4 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin G-alpha PF00503.20 gi|435852415|ref|YP_007314001.1| - 0.086 12.0 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit FtsK_SpoIIIE PF01580.18 gi|435852415|ref|YP_007314001.1| - 0.096 12.0 0.0 2.2 7.6 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_19 PF13245.6 gi|435852415|ref|YP_007314001.1| - 0.1 12.9 0.1 0.25 11.7 0.1 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|435852415|ref|YP_007314001.1| - 0.14 12.0 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|435852415|ref|YP_007314001.1| - 0.19 11.9 0.0 0.78 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain Kinesin PF00225.23 gi|435852415|ref|YP_007314001.1| - 0.21 10.5 0.0 0.32 9.9 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain SbcCD_C PF13558.6 gi|435852415|ref|YP_007314001.1| - 0.24 11.7 2.1 1.1 9.6 0.5 2.5 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit BPD_transp_1 PF00528.22 gi|435852416|ref|YP_007314002.1| - 1.7e-20 73.5 17.7 1.7e-20 73.5 17.7 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component YesK PF14150.6 gi|435852416|ref|YP_007314002.1| - 0.17 12.1 7.6 0.89 9.8 0.5 2.7 2 1 0 2 2 2 0 YesK-like protein SBP_bac_11 PF13531.6 gi|435852417|ref|YP_007314003.1| - 5.2e-45 154.0 0.0 6.1e-45 153.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|435852417|ref|YP_007314003.1| - 1.3e-09 38.5 0.1 0.00029 20.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|435852417|ref|YP_007314003.1| - 0.0031 17.0 0.0 0.0049 16.3 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.7 gi|435852417|ref|YP_007314003.1| - 0.032 13.9 0.3 0.072 12.7 0.3 1.6 1 1 0 1 1 1 0 PBP superfamily domain DUF4330 PF14221.6 gi|435852417|ref|YP_007314003.1| - 0.043 14.0 0.7 0.13 12.4 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4330) PBP_like PF12727.7 gi|435852417|ref|YP_007314003.1| - 0.048 12.8 0.0 0.071 12.2 0.0 1.3 1 0 0 1 1 1 0 PBP superfamily domain LVIVD PF08309.11 gi|435852418|ref|YP_007314004.1| - 2.3e-66 218.8 53.4 5.2e-15 54.5 4.4 8.3 8 1 0 8 8 8 7 LVIVD repeat Beta_propel PF09826.9 gi|435852418|ref|YP_007314004.1| - 3.3e-06 26.3 0.1 0.018 13.9 0.1 3.5 1 1 1 2 2 2 2 Beta propeller domain VCBS PF13517.6 gi|435852418|ref|YP_007314004.1| - 8e-05 23.2 40.2 0.002 18.7 8.6 6.7 3 1 4 7 7 7 5 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella IPU_b_solenoid PF18783.1 gi|435852418|ref|YP_007314004.1| - 0.0073 16.3 2.9 15 5.7 0.0 3.9 3 0 0 3 3 3 2 Isopullulanase beta-solenoid repeat Phage_Coat_Gp8 PF05371.12 gi|435852418|ref|YP_007314004.1| - 3.3 7.6 5.2 34 4.3 0.0 4.1 5 0 0 5 5 5 0 Phage major coat protein, Gp8 MTHFR_C PF12225.8 gi|435852419|ref|YP_007314005.1| - 3.3e-32 110.0 1.7 3.3e-32 110.0 1.7 1.8 2 1 0 2 2 2 1 Methylene-tetrahydrofolate reductase C terminal Pterin_bind PF00809.22 gi|435852420|ref|YP_007314006.1| - 8.7e-52 176.2 0.2 1.5e-51 175.4 0.2 1.4 1 0 0 1 1 1 1 Pterin binding enzyme THF_DHG_CYH_C PF02882.19 gi|435852421|ref|YP_007314007.1| - 8.3e-64 213.7 5.5 1.4e-63 213.0 5.5 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|435852421|ref|YP_007314007.1| - 8.7e-39 132.4 0.1 1.4e-38 131.7 0.1 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AdoHcyase_NAD PF00670.21 gi|435852421|ref|YP_007314007.1| - 0.02 15.0 2.9 1.1 9.3 2.9 2.2 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF498 PF04430.14 gi|435852421|ref|YP_007314007.1| - 0.043 13.9 0.1 0.12 12.4 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF498/DUF598) PTS_IIB PF02302.17 gi|435852421|ref|YP_007314007.1| - 0.93 10.2 7.0 0.3 11.8 0.3 3.0 3 1 1 4 4 4 0 PTS system, Lactose/Cellobiose specific IIB subunit SHMT PF00464.19 gi|435852422|ref|YP_007314008.1| - 1.6e-171 570.3 0.6 1.8e-171 570.1 0.6 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|435852422|ref|YP_007314008.1| - 1.8e-10 40.5 0.0 2.5e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|435852422|ref|YP_007314008.1| - 9.7e-07 28.3 0.3 1.7e-06 27.5 0.3 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|435852422|ref|YP_007314008.1| - 0.00035 19.6 0.0 0.0008 18.5 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.20 gi|435852422|ref|YP_007314008.1| - 0.0087 14.8 0.0 0.018 13.8 0.0 1.5 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain DegT_DnrJ_EryC1 PF01041.17 gi|435852422|ref|YP_007314008.1| - 0.014 14.8 0.1 0.019 14.3 0.1 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Formyl_trans_N PF00551.19 gi|435852423|ref|YP_007314009.1| - 2.3e-53 180.6 0.0 2.6e-53 180.5 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase HTH_3 PF01381.22 gi|435852424|ref|YP_007314010.1| - 4.1e-11 42.8 0.2 4.2e-10 39.5 0.1 2.5 2 1 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|435852424|ref|YP_007314010.1| - 5.4e-07 29.5 0.1 7.3e-06 25.9 0.0 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|435852424|ref|YP_007314010.1| - 9.3e-07 29.1 0.1 2.4e-06 27.8 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|435852424|ref|YP_007314010.1| - 9.7e-05 22.2 0.0 0.00054 19.8 0.1 2.2 2 0 0 2 2 2 1 HTH domain HTH_25 PF13413.6 gi|435852424|ref|YP_007314010.1| - 0.013 15.4 0.0 0.043 13.7 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain NUMOD1 PF07453.13 gi|435852424|ref|YP_007314010.1| - 0.015 15.6 0.0 0.42 10.9 0.0 2.6 2 0 0 2 2 2 0 NUMOD1 domain YdaS_antitoxin PF15943.5 gi|435852424|ref|YP_007314010.1| - 0.037 13.9 0.1 0.17 11.8 0.0 2.1 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 gi|435852424|ref|YP_007314010.1| - 0.043 13.6 0.0 0.093 12.6 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain GFRP PF06399.13 gi|435852424|ref|YP_007314010.1| - 0.058 13.3 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) GP3_package PF16677.5 gi|435852424|ref|YP_007314010.1| - 0.084 13.0 0.0 0.2 11.8 0.0 1.7 1 0 0 1 1 1 0 DNA-packaging protein gp3 HTH_psq PF05225.16 gi|435852424|ref|YP_007314010.1| - 0.11 12.2 0.2 0.36 10.6 0.0 1.9 2 0 0 2 2 2 0 helix-turn-helix, Psq domain Sigma70_r4 PF04545.16 gi|435852424|ref|YP_007314010.1| - 0.12 11.9 0.1 0.39 10.3 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_36 PF13730.6 gi|435852424|ref|YP_007314010.1| - 0.12 12.3 0.0 0.32 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|435852424|ref|YP_007314010.1| - 0.14 12.0 0.5 0.31 10.8 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 gi|435852424|ref|YP_007314010.1| - 0.17 11.7 0.1 0.57 10.0 0.1 1.9 2 0 0 2 2 2 0 MerR family regulatory protein DUF1743 PF08489.11 gi|435852425|ref|YP_007314011.1| - 1.6e-41 141.0 0.0 3.5e-41 139.9 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) C1_1 PF00130.22 gi|435852425|ref|YP_007314011.1| - 0.026 14.4 1.0 0.026 14.4 1.0 1.8 2 0 0 2 2 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HypA PF01155.19 gi|435852425|ref|YP_007314011.1| - 0.028 14.4 0.5 0.063 13.3 0.1 1.8 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DNA_RNApol_7kD PF03604.13 gi|435852425|ref|YP_007314011.1| - 0.028 14.1 5.8 0.11 12.2 5.8 2.0 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|435852425|ref|YP_007314011.1| - 0.035 14.2 2.1 0.87 9.8 0.1 2.8 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|435852425|ref|YP_007314011.1| - 0.056 13.4 0.6 0.17 11.9 0.6 1.9 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-C2HC5 PF06221.13 gi|435852425|ref|YP_007314011.1| - 0.11 12.4 1.1 0.55 10.3 0.2 2.4 3 0 0 3 3 3 0 Putative zinc finger motif, C2HC5-type OrfB_Zn_ribbon PF07282.11 gi|435852425|ref|YP_007314011.1| - 0.18 11.8 4.1 0.54 10.2 4.1 1.8 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|435852425|ref|YP_007314011.1| - 0.34 11.0 4.1 0.75 9.9 1.7 2.5 3 0 0 3 3 3 0 Double zinc ribbon TFIIS_C PF01096.18 gi|435852425|ref|YP_007314011.1| - 0.38 10.6 3.0 1 9.2 0.2 2.5 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Rubredoxin_2 PF18073.1 gi|435852425|ref|YP_007314011.1| - 1.3 8.9 4.0 1.1 9.1 0.3 2.7 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-NADH-PPase PF09297.11 gi|435852425|ref|YP_007314011.1| - 8.5 6.1 8.7 20 4.9 8.7 1.7 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain NAD_synthase PF02540.17 gi|435852426|ref|YP_007314012.1| - 1.7e-85 286.0 0.0 2.1e-85 285.7 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|435852426|ref|YP_007314012.1| - 2.5e-06 26.5 0.0 8.5e-05 21.5 0.0 2.2 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|435852426|ref|YP_007314012.1| - 0.011 15.4 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase QueC PF06508.13 gi|435852426|ref|YP_007314012.1| - 0.05 13.1 0.0 0.82 9.1 0.0 2.2 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|435852426|ref|YP_007314012.1| - 0.079 12.5 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) DUF1713 PF08213.11 gi|435852426|ref|YP_007314012.1| - 0.15 12.0 0.4 0.24 11.3 0.4 1.3 1 0 0 1 1 1 0 Mitochondrial domain of unknown function (DUF1713) PIN_6 PF17146.4 gi|435852427|ref|YP_007314013.1| - 5.3e-13 49.3 0.1 8.1e-13 48.7 0.1 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease Prok-RING_1 PF14446.6 gi|435852427|ref|YP_007314013.1| - 0.01 15.7 1.2 0.018 15.0 1.2 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 PIN_4 PF13638.6 gi|435852427|ref|YP_007314013.1| - 0.011 16.0 0.0 0.016 15.5 0.0 1.2 1 0 0 1 1 1 0 PIN domain zinc-ribbons_6 PF07191.12 gi|435852427|ref|YP_007314013.1| - 0.019 14.9 0.1 0.032 14.2 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbons DUF2256 PF10013.9 gi|435852427|ref|YP_007314013.1| - 0.033 14.3 2.7 3.6 7.8 0.2 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) PIN_5 PF08745.11 gi|435852427|ref|YP_007314013.1| - 0.035 13.5 0.5 0.076 12.4 0.4 1.6 2 0 0 2 2 2 0 PINc domain ribonuclease Rad50_zn_hook PF04423.14 gi|435852427|ref|YP_007314013.1| - 0.051 13.4 1.0 0.23 11.3 0.3 2.3 1 1 1 2 2 2 0 Rad50 zinc hook motif YdjO PF14169.6 gi|435852427|ref|YP_007314013.1| - 0.13 12.0 1.0 0.25 11.1 1.0 1.5 1 1 0 1 1 1 0 Cold-inducible protein YdjO HTH_31 PF13560.6 gi|435852427|ref|YP_007314013.1| - 0.15 12.4 0.1 4.4 7.7 0.0 2.2 1 1 1 2 2 2 0 Helix-turn-helix domain Ogr_Delta PF04606.12 gi|435852427|ref|YP_007314013.1| - 0.2 11.6 0.2 0.31 11.1 0.2 1.3 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger DNA_ligase_ZBD PF03119.16 gi|435852427|ref|YP_007314013.1| - 0.23 11.5 1.1 0.71 9.9 1.1 1.8 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-NADH-PPase PF09297.11 gi|435852427|ref|YP_007314013.1| - 1.1 9.0 3.2 0.69 9.6 0.5 1.9 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Pribosyltran PF00156.27 gi|435852428|ref|YP_007314014.1| - 1.2e-19 70.3 0.6 2e-19 69.6 0.6 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Sigma70_r4_2 PF08281.12 gi|435852428|ref|YP_007314014.1| - 0.00011 21.8 0.0 0.00019 21.0 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_7 PF02796.15 gi|435852428|ref|YP_007314014.1| - 0.00016 21.7 0.2 0.00049 20.1 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase GerE PF00196.19 gi|435852428|ref|YP_007314014.1| - 0.0004 19.9 0.0 0.00072 19.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family PRTase_2 PF15609.6 gi|435852428|ref|YP_007314014.1| - 0.00041 19.9 0.0 0.0018 17.8 0.0 1.8 1 1 1 2 2 2 1 Phosphoribosyl transferase HTH_23 PF13384.6 gi|435852428|ref|YP_007314014.1| - 0.00078 19.2 0.0 0.0017 18.1 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|435852428|ref|YP_007314014.1| - 0.0011 18.9 0.0 0.0027 17.6 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|435852428|ref|YP_007314014.1| - 0.004 16.7 0.1 0.0072 15.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|435852428|ref|YP_007314014.1| - 0.012 15.6 0.0 0.096 12.7 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn helix HTH_31 PF13560.6 gi|435852428|ref|YP_007314014.1| - 0.013 15.9 0.0 0.024 15.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|435852428|ref|YP_007314014.1| - 0.017 14.6 0.0 0.041 13.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|435852428|ref|YP_007314014.1| - 0.021 14.7 0.0 0.083 12.8 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_10 PF04967.12 gi|435852428|ref|YP_007314014.1| - 0.034 14.0 0.0 0.083 12.7 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain Terminase_5 PF06056.12 gi|435852428|ref|YP_007314014.1| - 0.042 13.7 0.0 0.17 11.8 0.0 1.9 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_38 PF13936.6 gi|435852428|ref|YP_007314014.1| - 0.062 13.1 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain UPRTase PF14681.6 gi|435852428|ref|YP_007314014.1| - 0.083 12.3 0.0 0.096 12.1 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase HTH_Crp_2 PF13545.6 gi|435852428|ref|YP_007314014.1| - 0.13 12.3 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain tRNA_anti-codon PF01336.25 gi|435852429|ref|YP_007314015.1| - 8.8e-11 41.6 0.0 2.9e-10 40.0 0.1 1.9 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DnaJ_CXXCXGXG PF00684.19 gi|435852429|ref|YP_007314015.1| - 4.1e-09 36.7 16.9 4.1e-09 36.7 16.9 2.6 1 1 1 2 2 2 2 DnaJ central domain tRNA_anti_2 PF13742.6 gi|435852429|ref|YP_007314015.1| - 1e-05 25.6 0.0 5.5e-05 23.3 0.0 2.3 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Anti-TRAP PF15777.5 gi|435852429|ref|YP_007314015.1| - 0.00026 20.9 17.7 0.016 15.2 2.0 2.8 2 0 0 2 2 2 2 Tryptophan RNA-binding attenuator protein inhibitory protein DHH PF01368.20 gi|435852429|ref|YP_007314015.1| - 0.00067 19.8 0.2 0.0016 18.6 0.2 1.6 1 0 0 1 1 1 1 DHH family RMI2 PF16100.5 gi|435852429|ref|YP_007314015.1| - 0.0035 17.1 0.0 0.0073 16.1 0.0 1.5 1 0 0 1 1 1 1 RecQ-mediated genome instability protein 2 S1 PF00575.23 gi|435852429|ref|YP_007314015.1| - 0.0061 16.9 0.2 0.051 13.9 0.1 2.5 2 0 0 2 2 2 1 S1 RNA binding domain Rep_fac-A_3 PF08661.11 gi|435852429|ref|YP_007314015.1| - 0.096 13.0 0.0 0.23 11.9 0.0 1.7 1 0 0 1 1 1 0 Replication factor A protein 3 HypA PF01155.19 gi|435852429|ref|YP_007314015.1| - 2.6 8.1 24.5 39 4.3 3.6 4.4 2 1 0 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Band_7 PF01145.25 gi|435852430|ref|YP_007314016.1| - 4.7e-37 127.7 3.4 6.2e-37 127.3 3.4 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Glyco_hydro_80 PF13647.6 gi|435852430|ref|YP_007314016.1| - 0.00066 19.3 0.0 0.001 18.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 80 of chitosanase A Band_7_1 PF13421.6 gi|435852430|ref|YP_007314016.1| - 0.0028 17.4 0.4 0.0057 16.4 0.1 1.7 2 0 0 2 2 2 1 SPFH domain-Band 7 family NfeD PF01957.18 gi|435852431|ref|YP_007314017.1| - 2.7e-14 53.3 0.1 1.4e-13 51.0 0.1 2.3 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|435852431|ref|YP_007314017.1| - 1.3e-05 25.2 0.7 2.2e-05 24.4 0.7 1.3 1 0 0 1 1 1 1 Clp protease MazE_antitoxin PF04014.18 gi|435852431|ref|YP_007314017.1| - 0.16 12.0 0.6 0.53 10.3 0.6 1.9 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin AIRS_C PF02769.22 gi|435852432|ref|YP_007314018.1| - 4.5e-15 56.1 1.9 8.2e-15 55.3 1.9 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|435852432|ref|YP_007314018.1| - 5.9e-08 33.3 0.8 1.7e-07 31.8 0.8 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain GATase PF00117.28 gi|435852433|ref|YP_007314019.1| - 1.1e-24 87.2 0.0 1.3e-24 87.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|435852433|ref|YP_007314019.1| - 3.8e-07 29.9 0.5 2e-06 27.6 0.1 1.9 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|435852433|ref|YP_007314019.1| - 3.6e-06 27.0 0.0 1.3e-05 25.1 0.0 1.8 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|435852433|ref|YP_007314019.1| - 8.5e-06 25.7 0.0 1.5e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|435852433|ref|YP_007314019.1| - 0.0041 16.9 0.0 0.0062 16.4 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_5 PF13507.6 gi|435852433|ref|YP_007314019.1| - 0.064 12.3 0.0 0.95 8.5 0.0 2.3 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain CarboxypepD_reg PF13620.6 gi|435852434|ref|YP_007314020.1| - 0.00017 21.8 6.4 0.001 19.3 2.0 2.9 1 1 1 2 2 2 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|435852434|ref|YP_007314020.1| - 0.00043 20.2 1.7 0.00043 20.2 1.7 2.3 1 1 1 2 2 2 1 Bacterial Ig-like domain (group 1) MG4 PF17789.1 gi|435852434|ref|YP_007314020.1| - 0.0059 16.7 0.2 0.028 14.5 0.0 2.0 1 1 1 2 2 2 1 Macroglobulin domain MG4 Invasin_D3 PF09134.10 gi|435852434|ref|YP_007314020.1| - 0.01 16.1 2.3 0.023 15.0 1.7 2.0 1 1 0 1 1 1 0 Invasin, domain 3 Glyco_hydro2_C5 PF18565.1 gi|435852434|ref|YP_007314020.1| - 0.05 13.4 0.1 2 8.3 0.1 2.4 1 1 0 1 1 1 0 Glycoside hydrolase family 2 C-terminal domain 5 PIG-P PF08510.12 gi|435852434|ref|YP_007314020.1| - 0.32 10.9 1.4 0.44 10.5 1.4 1.4 1 1 0 1 1 1 0 PIG-P CarboxypepD_reg PF13620.6 gi|435852435|ref|YP_007314021.1| - 4e-05 23.8 0.6 0.00011 22.3 0.1 2.0 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|435852435|ref|YP_007314021.1| - 0.0049 16.8 0.9 0.0098 15.9 0.2 1.8 2 1 0 2 2 2 1 Bacterial Ig-like domain (group 1) Big_6 PF17936.1 gi|435852435|ref|YP_007314021.1| - 0.02 15.2 0.1 0.047 14.0 0.0 1.8 1 1 0 1 1 1 0 Bacterial Ig domain CarbopepD_reg_2 PF13715.6 gi|435852435|ref|YP_007314021.1| - 0.063 13.3 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 CarboxypepD_reg-like domain CHAD PF05235.14 gi|435852436|ref|YP_007314022.1| - 0.0012 18.9 1.7 0.0015 18.6 0.3 1.7 1 1 1 2 2 2 1 CHAD domain FH2 PF02181.23 gi|435852436|ref|YP_007314022.1| - 0.0017 17.5 5.0 0.15 11.1 3.7 2.0 2 0 0 2 2 2 1 Formin Homology 2 Domain DUF1664 PF07889.12 gi|435852436|ref|YP_007314022.1| - 0.0024 17.9 6.0 1.1 9.3 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1664) PilJ PF13675.6 gi|435852436|ref|YP_007314022.1| - 0.0026 17.7 6.5 0.043 13.9 2.4 2.3 1 1 1 2 2 2 1 Type IV pili methyl-accepting chemotaxis transducer N-term CorA PF01544.18 gi|435852436|ref|YP_007314022.1| - 0.0052 16.1 2.9 0.0052 16.1 2.9 2.1 2 1 1 3 3 2 1 CorA-like Mg2+ transporter protein V_ATPase_I PF01496.19 gi|435852436|ref|YP_007314022.1| - 0.0057 14.6 1.1 0.0067 14.4 1.1 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family FUSC PF04632.12 gi|435852436|ref|YP_007314022.1| - 0.0063 15.1 0.0 0.0093 14.5 0.0 1.2 1 0 0 1 1 1 1 Fusaric acid resistance protein family FlxA PF14282.6 gi|435852436|ref|YP_007314022.1| - 0.019 14.9 11.3 0.064 13.3 10.9 1.9 2 1 0 2 2 2 0 FlxA-like protein Syntaxin-6_N PF09177.11 gi|435852436|ref|YP_007314022.1| - 0.021 15.3 4.3 1.9 9.1 1.9 2.4 2 0 0 2 2 2 0 Syntaxin 6, N-terminal TPR_MLP1_2 PF07926.12 gi|435852436|ref|YP_007314022.1| - 0.023 14.8 12.3 0.028 14.5 8.3 2.5 3 0 0 3 3 3 0 TPR/MLP1/MLP2-like protein CCDC-167 PF15188.6 gi|435852436|ref|YP_007314022.1| - 0.027 14.8 12.8 0.071 13.5 5.3 2.9 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 FlaC_arch PF05377.11 gi|435852436|ref|YP_007314022.1| - 0.028 14.8 4.6 1.4 9.3 0.1 3.3 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) CENP-H PF05837.12 gi|435852436|ref|YP_007314022.1| - 0.031 14.7 6.1 0.13 12.7 2.7 2.3 2 1 0 2 2 2 0 Centromere protein H (CENP-H) CK2S PF15011.6 gi|435852436|ref|YP_007314022.1| - 0.031 14.2 8.1 0.033 14.1 0.2 2.2 1 1 1 2 2 2 0 Casein Kinase 2 substrate Spc24 PF08286.11 gi|435852436|ref|YP_007314022.1| - 0.032 14.5 11.5 6.6 7.0 0.0 2.8 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 HlyD_2 PF12700.7 gi|435852436|ref|YP_007314022.1| - 0.043 12.5 1.2 0.055 12.2 1.2 1.1 1 0 0 1 1 1 0 HlyD family secretion protein DASH_Dad2 PF08654.10 gi|435852436|ref|YP_007314022.1| - 0.045 14.2 9.6 0.35 11.3 1.4 2.9 3 1 1 4 4 2 0 DASH complex subunit Dad2 Bap31_Bap29_C PF18035.1 gi|435852436|ref|YP_007314022.1| - 0.063 13.3 1.1 0.063 13.3 1.1 2.1 2 0 0 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain DUF16 PF01519.16 gi|435852436|ref|YP_007314022.1| - 0.1 13.1 10.0 0.72 10.4 10.0 2.0 1 1 0 1 1 1 0 Protein of unknown function DUF16 TolA_bind_tri PF16331.5 gi|435852436|ref|YP_007314022.1| - 0.12 12.4 19.8 0.3 11.2 3.8 3.9 2 2 2 4 4 4 0 TolA binding protein trimerisation WXG100 PF06013.12 gi|435852436|ref|YP_007314022.1| - 0.14 12.4 4.3 1.5 9.1 0.4 2.9 3 0 0 3 3 3 0 Proteins of 100 residues with WXG Jnk-SapK_ap_N PF09744.9 gi|435852436|ref|YP_007314022.1| - 0.16 12.2 8.9 0.13 12.5 4.9 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 DUF883 PF05957.13 gi|435852436|ref|YP_007314022.1| - 0.17 12.5 2.9 0.24 12.0 0.1 2.6 3 0 0 3 3 2 0 Bacterial protein of unknown function (DUF883) TRPM_tetra PF16519.5 gi|435852436|ref|YP_007314022.1| - 0.21 11.7 6.2 3.9 7.7 0.0 3.2 3 0 0 3 3 3 0 Tetramerisation domain of TRPM Macoilin PF09726.9 gi|435852436|ref|YP_007314022.1| - 0.22 10.1 11.2 1.1 7.8 11.4 2.0 1 1 0 1 1 1 0 Macoilin family YbaB_DNA_bd PF02575.16 gi|435852436|ref|YP_007314022.1| - 0.22 11.8 4.0 2 8.7 0.1 2.4 2 0 0 2 2 2 0 YbaB/EbfC DNA-binding family Med10 PF09748.9 gi|435852436|ref|YP_007314022.1| - 0.22 11.5 7.1 7 6.7 3.0 3.3 2 2 0 2 2 2 0 Transcription factor subunit Med10 of Mediator complex Allexi_40kDa PF05549.11 gi|435852436|ref|YP_007314022.1| - 0.27 10.7 7.6 0.95 8.9 4.9 2.0 1 1 1 2 2 2 0 Allexivirus 40kDa protein DUF4665 PF15679.5 gi|435852436|ref|YP_007314022.1| - 0.3 11.7 3.0 8.8 7.0 2.4 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4665) NPV_P10 PF05531.12 gi|435852436|ref|YP_007314022.1| - 0.31 11.5 5.3 5 7.7 4.2 2.5 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Seryl_tRNA_N PF02403.22 gi|435852436|ref|YP_007314022.1| - 0.35 11.1 8.2 3.7 7.8 1.6 2.8 2 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Sugarporin_N PF11471.8 gi|435852436|ref|YP_007314022.1| - 0.44 10.5 8.9 1.8 8.6 0.4 2.9 3 0 0 3 3 2 0 Maltoporin periplasmic N-terminal extension ACCA PF03255.14 gi|435852436|ref|YP_007314022.1| - 0.45 10.4 8.7 5.1 7.0 0.0 2.5 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Gti1_Pac2 PF09729.9 gi|435852436|ref|YP_007314022.1| - 0.48 10.5 3.1 0.49 10.5 0.1 2.1 2 1 0 2 2 2 0 Gti1/Pac2 family Baculo_PEP_C PF04513.12 gi|435852436|ref|YP_007314022.1| - 0.5 10.4 5.1 2.4 8.2 3.9 2.2 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Rota_NSP3 PF01665.16 gi|435852436|ref|YP_007314022.1| - 0.52 9.4 3.2 5.7 6.0 0.8 2.4 1 1 2 3 3 3 0 Rotavirus non-structural protein NSP3 SlyX PF04102.12 gi|435852436|ref|YP_007314022.1| - 0.6 10.8 15.8 4.4 8.0 1.8 4.0 1 1 3 4 4 4 0 SlyX Surfac_D-trimer PF09006.11 gi|435852436|ref|YP_007314022.1| - 0.67 9.9 5.6 0.7 9.8 0.5 3.0 4 0 0 4 4 2 0 Lung surfactant protein D coiled-coil trimerisation DUF5320 PF17253.2 gi|435852436|ref|YP_007314022.1| - 0.88 10.7 8.6 7.1 7.8 0.5 3.1 2 1 1 3 3 3 0 Family of unknown function (DUF5320) Prefoldin_2 PF01920.20 gi|435852436|ref|YP_007314022.1| - 0.91 9.5 14.9 11 6.0 0.0 3.4 3 1 1 4 4 3 0 Prefoldin subunit DUF3584 PF12128.8 gi|435852436|ref|YP_007314022.1| - 0.99 6.8 10.6 2.9 5.3 10.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) DUF2802 PF10975.8 gi|435852436|ref|YP_007314022.1| - 1 9.5 12.2 5.8 7.1 2.8 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2802) Prefoldin_3 PF13758.6 gi|435852436|ref|YP_007314022.1| - 1.1 9.4 7.1 2.5 8.2 0.1 3.0 2 1 0 2 2 2 0 Prefoldin subunit Exonuc_VII_L PF02601.15 gi|435852436|ref|YP_007314022.1| - 1.1 8.7 9.3 2.3 7.7 9.3 1.5 1 1 0 1 1 1 0 Exonuclease VII, large subunit Noelin-1 PF12308.8 gi|435852436|ref|YP_007314022.1| - 1.2 9.2 10.8 2.8 8.0 0.5 3.0 1 1 2 3 3 3 0 Neurogenesis glycoprotein Laminin_II PF06009.12 gi|435852436|ref|YP_007314022.1| - 1.2 9.1 5.1 2.1 8.4 3.1 2.1 2 0 0 2 2 2 0 Laminin Domain II Matrilin_ccoil PF10393.9 gi|435852436|ref|YP_007314022.1| - 1.4 8.9 9.6 0.38 10.7 1.4 2.7 3 0 0 3 3 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Vps51 PF08700.11 gi|435852436|ref|YP_007314022.1| - 1.5 8.9 10.5 1.2 9.3 1.0 3.7 3 1 1 4 4 4 0 Vps51/Vps67 FapA PF03961.13 gi|435852436|ref|YP_007314022.1| - 1.8 7.1 8.6 2.2 6.8 7.3 1.7 1 1 1 2 2 2 0 Flagellar Assembly Protein A Csm1_N PF18504.1 gi|435852436|ref|YP_007314022.1| - 1.8 9.0 13.3 1.7 9.1 2.9 3.2 2 1 1 3 3 3 0 Csm1 N-terminal domain DUF1690 PF07956.11 gi|435852436|ref|YP_007314022.1| - 1.9 8.9 10.7 1.7 9.0 8.2 2.0 1 1 0 2 2 2 0 Protein of Unknown function (DUF1690) Tropomyosin_1 PF12718.7 gi|435852436|ref|YP_007314022.1| - 2.2 8.5 15.5 6.3 7.0 12.6 2.1 1 1 1 2 2 2 0 Tropomyosin like DUF1640 PF07798.11 gi|435852436|ref|YP_007314022.1| - 2.4 8.2 11.0 0.55 10.3 7.2 1.8 2 1 1 3 3 1 0 Protein of unknown function (DUF1640) Ran-binding PF05508.11 gi|435852436|ref|YP_007314022.1| - 2.7 6.9 7.4 2.7 6.9 4.8 2.0 2 0 0 2 2 2 0 RanGTP-binding protein Prominin PF05478.11 gi|435852436|ref|YP_007314022.1| - 3.3 5.5 5.8 5.7 4.8 5.3 1.4 1 1 0 1 1 1 0 Prominin Swi5 PF07061.11 gi|435852436|ref|YP_007314022.1| - 4 7.6 8.8 44 4.2 8.1 2.7 2 1 0 2 2 2 0 Swi5 Use1 PF09753.9 gi|435852436|ref|YP_007314022.1| - 4.1 7.1 12.1 3.2 7.4 9.5 1.9 1 1 0 2 2 2 0 Membrane fusion protein Use1 Nup54 PF13874.6 gi|435852436|ref|YP_007314022.1| - 4.4 7.4 9.4 4.4 7.4 6.1 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 UPF0242 PF06785.11 gi|435852436|ref|YP_007314022.1| - 4.7 7.3 17.9 1.1 9.3 10.8 2.6 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus ABC_tran_CTD PF16326.5 gi|435852436|ref|YP_007314022.1| - 5.2 7.4 11.5 7.1 7.0 1.7 3.0 1 1 2 3 3 3 0 ABC transporter C-terminal domain Fib_alpha PF08702.10 gi|435852436|ref|YP_007314022.1| - 5.2 7.2 10.6 6.4 7.0 7.2 2.3 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family DivIC PF04977.15 gi|435852436|ref|YP_007314022.1| - 5.3 6.9 12.2 0.12 12.1 2.8 2.6 2 1 1 3 3 2 0 Septum formation initiator DUF4140 PF13600.6 gi|435852436|ref|YP_007314022.1| - 5.9 7.4 9.9 12 6.4 0.4 3.2 2 1 1 3 3 3 0 N-terminal domain of unknown function (DUF4140) TMPIT PF07851.13 gi|435852436|ref|YP_007314022.1| - 8.5 5.5 7.8 12 5.0 6.3 1.9 1 1 1 2 2 2 0 TMPIT-like protein FAM76 PF16046.5 gi|435852436|ref|YP_007314022.1| - 8.9 5.6 7.2 12 5.1 6.7 1.4 1 1 0 1 1 1 0 FAM76 protein UDPG_MGDP_dh_N PF03721.14 gi|435852437|ref|YP_007314023.1| - 1.2e-64 217.4 0.5 1.7e-64 216.9 0.5 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|435852437|ref|YP_007314023.1| - 1.7e-36 124.3 0.0 3.2e-36 123.4 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|435852437|ref|YP_007314023.1| - 5.1e-30 104.0 0.1 2e-29 102.1 0.0 2.0 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|435852437|ref|YP_007314023.1| - 4.5e-06 27.1 0.2 0.0097 16.5 0.0 3.7 4 1 0 4 4 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|435852437|ref|YP_007314023.1| - 3.5e-05 24.0 0.1 0.014 15.6 0.1 2.6 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|435852437|ref|YP_007314023.1| - 6.5e-05 22.4 0.1 0.011 15.2 0.0 3.0 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|435852437|ref|YP_007314023.1| - 6.6e-05 22.9 0.1 0.00017 21.5 0.0 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|435852437|ref|YP_007314023.1| - 0.00024 21.1 0.2 0.00089 19.3 0.1 2.2 3 1 0 3 3 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DpaA_N PF16924.5 gi|435852437|ref|YP_007314023.1| - 0.0024 17.9 0.0 0.044 13.9 0.0 2.8 2 1 0 2 2 2 1 Dipicolinate synthase subunit A N-terminal domain Pyr_redox_2 PF07992.14 gi|435852437|ref|YP_007314023.1| - 0.0035 16.6 0.1 0.0073 15.6 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|435852437|ref|YP_007314023.1| - 0.0047 17.5 0.1 0.014 15.9 0.1 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|435852437|ref|YP_007314023.1| - 0.01 15.5 0.1 0.024 14.3 0.1 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.22 gi|435852437|ref|YP_007314023.1| - 0.048 14.5 0.1 0.18 12.6 0.1 2.1 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold AlaDh_PNT_C PF01262.21 gi|435852437|ref|YP_007314023.1| - 0.055 12.8 0.0 0.091 12.0 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|435852437|ref|YP_007314023.1| - 0.058 13.7 0.3 0.22 11.8 0.1 2.2 2 0 0 2 2 1 0 TrkA-N domain Rossmann-like PF10727.9 gi|435852437|ref|YP_007314023.1| - 0.092 12.6 0.1 2.3 8.1 0.0 2.3 2 0 0 2 2 2 0 Rossmann-like domain HNH_repeat PF18780.1 gi|435852437|ref|YP_007314023.1| - 0.12 12.2 6.1 1 9.2 0.1 3.0 3 0 0 3 3 3 0 Homing endonuclease repeat NAD_binding_11 PF14833.6 gi|435852437|ref|YP_007314023.1| - 0.12 12.6 0.1 0.61 10.3 0.3 2.0 2 0 0 2 2 2 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Epimerase PF01370.21 gi|435852437|ref|YP_007314023.1| - 0.13 11.7 0.0 0.31 10.5 0.0 1.6 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family MMR_HSR1_Xtn PF16897.5 gi|435852438|ref|YP_007314024.1| - 1.6e-31 108.4 2.4 2e-31 108.2 1.2 1.8 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|435852438|ref|YP_007314024.1| - 4e-21 75.2 0.1 1.1e-20 73.8 0.0 1.8 1 1 1 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|435852438|ref|YP_007314024.1| - 1.1e-17 63.9 0.0 2.1e-17 62.9 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|435852438|ref|YP_007314024.1| - 2.4e-13 49.9 2.4 2.9e-12 46.4 0.2 2.5 2 1 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|435852438|ref|YP_007314024.1| - 7.1e-05 22.8 1.6 0.013 15.4 0.1 3.2 2 1 1 3 3 3 1 RsgA GTPase Arf PF00025.21 gi|435852438|ref|YP_007314024.1| - 0.00025 20.6 1.7 0.0085 15.6 0.3 2.9 1 1 2 3 3 3 1 ADP-ribosylation factor family Dynamin_N PF00350.23 gi|435852438|ref|YP_007314024.1| - 0.0092 16.0 0.1 1.1 9.3 0.0 2.5 2 0 0 2 2 2 1 Dynamin family SRPRB PF09439.10 gi|435852438|ref|YP_007314024.1| - 0.02 14.3 0.0 0.043 13.3 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit ATP_bind_1 PF03029.17 gi|435852438|ref|YP_007314024.1| - 0.023 14.5 0.1 5.7 6.6 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MeaB PF03308.16 gi|435852438|ref|YP_007314024.1| - 0.03 13.3 0.1 0.11 11.5 0.1 1.8 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|435852438|ref|YP_007314024.1| - 0.04 13.5 1.3 1.5 8.4 0.0 2.7 2 1 1 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|435852438|ref|YP_007314024.1| - 0.043 14.2 0.1 0.096 13.1 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AIG1 PF04548.16 gi|435852438|ref|YP_007314024.1| - 0.067 12.5 0.2 0.13 11.6 0.0 1.5 2 0 0 2 2 2 0 AIG1 family AAA_33 PF13671.6 gi|435852438|ref|YP_007314024.1| - 0.12 12.6 0.0 0.29 11.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain Roc PF08477.13 gi|435852438|ref|YP_007314024.1| - 0.17 12.1 0.1 0.42 10.9 0.0 1.7 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase zf-MYND PF01753.18 gi|435852440|ref|YP_007314026.1| - 0.11 12.6 4.3 0.23 11.6 4.3 1.6 1 1 0 1 1 1 0 MYND finger Ribosomal_S27e PF01667.17 gi|435852440|ref|YP_007314026.1| - 0.22 11.3 4.8 0.25 11.1 4.8 1.2 1 1 0 1 1 1 0 Ribosomal protein S27 DUF3006 PF11213.8 gi|435852441|ref|YP_007314027.1| - 3.3e-19 68.9 0.6 3.7e-19 68.7 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) CHS5_N PF16892.5 gi|435852441|ref|YP_007314027.1| - 0.064 13.2 0.1 0.1 12.6 0.1 1.5 1 1 0 1 1 1 0 Chitin biosynthesis protein CHS5 N-terminus Lactamase_B PF00753.27 gi|435852442|ref|YP_007314028.1| - 1.9e-16 60.7 0.2 3.7e-16 59.7 0.2 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|435852442|ref|YP_007314028.1| - 1.8e-07 30.9 0.0 3.3e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain LTD PF00932.19 gi|435852442|ref|YP_007314028.1| - 0.00021 21.6 1.3 0.0023 18.3 0.2 3.0 2 1 1 3 3 3 1 Lamin Tail Domain Lactamase_B_6 PF16661.5 gi|435852442|ref|YP_007314028.1| - 0.004 16.6 0.0 0.0098 15.3 0.0 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|435852442|ref|YP_007314028.1| - 0.014 15.3 0.0 0.037 13.9 0.0 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain O-antigen_lig PF13425.6 gi|435852442|ref|YP_007314028.1| - 0.038 12.8 0.2 0.051 12.4 0.2 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein DUF4064 PF13273.6 gi|435852442|ref|YP_007314028.1| - 0.041 14.2 0.0 0.086 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) ABC2_membrane_3 PF12698.7 gi|435852442|ref|YP_007314028.1| - 0.13 11.3 0.7 0.26 10.4 0.7 1.4 1 0 0 1 1 1 0 ABC-2 family transporter protein PBP3 PF18056.1 gi|435852442|ref|YP_007314028.1| - 1.6 8.8 5.4 15 5.7 3.3 3.0 2 1 1 3 3 3 0 Penicillin Binding Protein 3 Domain SAM_adeno_trans PF01887.16 gi|435852443|ref|YP_007314029.1| - 2.7e-82 275.8 0.5 3e-82 275.6 0.5 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Radical_SAM PF04055.21 gi|435852444|ref|YP_007314030.1| - 1.3e-16 61.4 0.6 3.7e-16 59.9 0.2 1.8 2 0 0 2 2 2 1 Radical SAM superfamily DUF3463 PF11946.8 gi|435852444|ref|YP_007314030.1| - 3.8e-07 30.0 0.3 6.6e-07 29.2 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3463) SPASM PF13186.6 gi|435852444|ref|YP_007314030.1| - 0.00064 20.2 0.3 0.002 18.6 0.3 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Orthopox_F14 PF06076.12 gi|435852444|ref|YP_007314030.1| - 0.002 18.3 0.3 0.0061 16.8 0.3 1.8 1 0 0 1 1 1 1 Orthopoxvirus F14 protein Fer4_12 PF13353.6 gi|435852444|ref|YP_007314030.1| - 0.004 17.4 0.0 0.016 15.5 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain BcrAD_BadFG PF01869.20 gi|435852444|ref|YP_007314030.1| - 0.096 12.2 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family Ribosomal_60s PF00428.19 gi|435852445|ref|YP_007314031.1| - 1.5e-18 67.2 20.5 1.7e-18 66.9 20.5 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.6 gi|435852445|ref|YP_007314031.1| - 0.75 9.8 14.6 0.42 10.7 11.6 1.8 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF3138 PF11336.8 gi|435852445|ref|YP_007314031.1| - 6.8 5.2 9.6 7.6 5.0 9.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) BAF1_ABF1 PF04684.13 gi|435852445|ref|YP_007314031.1| - 7.7 5.4 6.7 9.5 5.1 6.7 1.1 1 0 0 1 1 1 0 BAF1 / ABF1 chromatin reorganising factor Ribosomal_L10 PF00466.20 gi|435852446|ref|YP_007314032.1| - 5.7e-25 87.4 0.4 5.7e-25 87.4 0.4 2.0 2 0 0 2 2 2 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|435852446|ref|YP_007314032.1| - 8.9e-16 57.7 0.1 1.7e-15 56.7 0.1 1.4 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|435852446|ref|YP_007314032.1| - 1.9e-05 25.1 26.1 0.0022 18.5 15.2 3.0 2 1 1 3 3 3 2 60s Acidic ribosomal protein TetR_C_14 PF17754.1 gi|435852446|ref|YP_007314032.1| - 0.017 15.1 3.4 0.041 13.8 3.4 1.6 1 0 0 1 1 1 0 MftR C-terminal domain Ribosomal_L1 PF00687.21 gi|435852447|ref|YP_007314033.1| - 4.2e-47 160.5 0.1 5.1e-47 160.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family TFIIF_beta_N PF17683.1 gi|435852447|ref|YP_007314033.1| - 0.14 12.9 0.0 0.15 12.8 0.0 1.3 1 0 0 1 1 1 0 TFIIF, beta subunit N-terminus Ribosomal_L11_N PF03946.14 gi|435852448|ref|YP_007314034.1| - 5.4e-26 90.2 0.6 8.6e-26 89.6 0.6 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|435852448|ref|YP_007314034.1| - 1.8e-19 70.0 0.7 3.4e-19 69.1 0.7 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Spt5-NGN PF03439.13 gi|435852449|ref|YP_007314035.1| - 2.9e-23 81.6 0.3 4.2e-23 81.1 0.3 1.2 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|435852449|ref|YP_007314035.1| - 4.2e-06 26.5 3.2 3.6e-05 23.5 0.1 2.8 3 0 0 3 3 3 1 KOW motif Motile_Sperm PF00635.26 gi|435852449|ref|YP_007314035.1| - 0.072 12.9 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 MSP (Major sperm protein) domain SecE PF00584.20 gi|435852450|ref|YP_007314036.1| - 2e-05 24.4 0.4 2.3e-05 24.2 0.4 1.2 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Tubulin PF00091.25 gi|435852451|ref|YP_007314037.1| - 7.5e-43 147.0 0.1 1.1e-42 146.5 0.1 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|435852451|ref|YP_007314037.1| - 4.9e-36 122.9 2.0 1.4e-35 121.5 2.0 1.8 1 0 0 1 1 1 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|435852451|ref|YP_007314037.1| - 0.0032 17.4 0.6 0.015 15.2 0.1 2.2 2 0 0 2 2 2 1 NAD(P)H-binding Tubulin_2 PF13809.6 gi|435852451|ref|YP_007314037.1| - 4.7 6.3 6.5 1.4 8.0 2.7 2.0 1 1 1 2 2 2 0 Tubulin like tRNA_deacylase PF04414.12 gi|435852452|ref|YP_007314038.1| - 1.8e-66 223.6 0.1 2.5e-66 223.1 0.1 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase TPP_enzyme_N PF02776.18 gi|435852453|ref|YP_007314039.1| - 3.8e-55 186.1 0.0 8e-55 185.1 0.0 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|435852453|ref|YP_007314039.1| - 1.4e-41 141.8 0.0 3.3e-41 140.6 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|435852453|ref|YP_007314039.1| - 4.1e-37 127.0 0.0 2.3e-36 124.6 0.0 2.3 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain DUF1611_N PF17396.2 gi|435852453|ref|YP_007314039.1| - 0.012 15.8 0.1 2.1 8.6 0.0 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_N) Rossmann-like domain CO_dh PF02552.16 gi|435852453|ref|YP_007314039.1| - 0.067 13.0 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit Aldedh PF00171.22 gi|435852454|ref|YP_007314040.1| - 5.6e-137 457.0 0.0 6.3e-137 456.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family GYD PF08734.11 gi|435852454|ref|YP_007314040.1| - 0.1 12.5 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 GYD domain Aldedh PF00171.22 gi|435852455|ref|YP_007314041.1| - 1.1e-147 492.4 0.1 1.2e-147 492.2 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF61 PF01886.16 gi|435852456|ref|YP_007314042.1| - 6e-39 133.0 0.1 6.7e-39 132.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 TRAPPC-Trs85 PF12739.7 gi|435852456|ref|YP_007314042.1| - 0.15 11.0 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 ER-Golgi trafficking TRAPP I complex 85 kDa subunit Polbeta PF18765.1 gi|435852457|ref|YP_007314043.1| - 0.0016 18.5 0.0 0.0027 17.7 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase IF-2B PF01008.17 gi|435852458|ref|YP_007314044.1| - 1.9e-85 286.5 4.0 2.2e-85 286.3 4.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family FumaraseC_C PF10415.9 gi|435852458|ref|YP_007314044.1| - 0.077 13.4 0.8 1.7 9.1 0.0 2.8 3 0 0 3 3 3 0 Fumarase C C-terminus SIS_2 PF13580.6 gi|435852458|ref|YP_007314044.1| - 0.12 12.4 2.7 0.15 12.1 0.5 2.2 3 0 0 3 3 3 0 SIS domain Cdd1 PF11731.8 gi|435852459|ref|YP_007314045.1| - 1.3e-32 111.9 0.2 1.4e-32 111.7 0.2 1.0 1 0 0 1 1 1 1 Pathogenicity locus TfoX_C PF04994.13 gi|435852459|ref|YP_007314045.1| - 2.5e-05 24.3 0.0 2.9e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 TfoX C-terminal domain HHH PF00633.23 gi|435852459|ref|YP_007314045.1| - 5.7e-05 22.8 0.1 9.8e-05 22.0 0.1 1.3 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|435852459|ref|YP_007314045.1| - 0.00036 21.1 0.0 0.00048 20.7 0.0 1.2 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|435852459|ref|YP_007314045.1| - 0.00037 20.3 0.0 0.00053 19.8 0.0 1.3 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_8 PF14716.6 gi|435852459|ref|YP_007314045.1| - 0.014 15.7 0.0 0.023 15.0 0.0 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix domain HEM4 PF02602.15 gi|435852459|ref|YP_007314045.1| - 0.032 13.6 0.0 0.24 10.7 0.0 1.7 1 1 1 2 2 2 0 Uroporphyrinogen-III synthase HemD DUF4332 PF14229.6 gi|435852459|ref|YP_007314045.1| - 0.1 12.8 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) IMS_HHH PF11798.8 gi|435852459|ref|YP_007314045.1| - 0.12 12.8 0.3 0.84 10.1 0.3 2.1 1 1 1 2 2 2 0 IMS family HHH motif Nitroreductase PF00881.24 gi|435852460|ref|YP_007314046.1| - 2.8e-27 95.8 0.0 3.4e-27 95.5 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|435852460|ref|YP_007314046.1| - 0.0077 15.8 0.0 0.051 13.1 0.0 2.0 2 0 0 2 2 2 1 Putative TM nitroreductase Methyltransf_11 PF08241.12 gi|435852461|ref|YP_007314047.1| - 2.4e-14 53.8 0.0 4.6e-14 52.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|435852461|ref|YP_007314047.1| - 8.2e-11 42.5 0.0 1.9e-10 41.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|435852461|ref|YP_007314047.1| - 5.9e-07 29.5 0.0 8.2e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|435852461|ref|YP_007314047.1| - 5.7e-06 26.2 0.0 8.5e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|435852461|ref|YP_007314047.1| - 1.9e-05 25.3 0.0 4.9e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|435852461|ref|YP_007314047.1| - 0.00012 22.0 0.0 0.00015 21.7 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase Ubie_methyltran PF01209.18 gi|435852461|ref|YP_007314047.1| - 0.0038 16.6 0.0 0.0089 15.4 0.0 1.8 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family GcpE PF04551.14 gi|435852461|ref|YP_007314047.1| - 0.064 12.3 0.0 0.088 11.9 0.0 1.2 1 0 0 1 1 1 0 GcpE protein Bin3 PF06859.12 gi|435852461|ref|YP_007314047.1| - 0.11 13.1 0.0 0.27 11.9 0.0 1.6 1 0 0 1 1 1 0 Bicoid-interacting protein 3 (Bin3) OrfB_IS605 PF01385.19 gi|435852462|ref|YP_007314048.1| - 7.6e-27 93.9 1.1 7.6e-27 93.9 1.1 1.7 2 0 0 2 2 2 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|435852462|ref|YP_007314048.1| - 2.1e-21 75.1 1.5 4.5e-21 74.1 1.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 gi|435852462|ref|YP_007314048.1| - 2.5e-19 69.0 0.4 5.2e-19 67.9 0.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-piccolo PF05715.13 gi|435852462|ref|YP_007314048.1| - 0.039 14.1 0.3 0.039 14.1 0.3 1.8 2 0 0 2 2 2 0 Piccolo Zn-finger zf-UDP PF14569.6 gi|435852462|ref|YP_007314048.1| - 0.11 12.6 0.3 0.52 10.5 0.1 2.1 2 0 0 2 2 2 0 Zinc-binding RING-finger Ribosomal_L32p PF01783.23 gi|435852462|ref|YP_007314048.1| - 1.1 9.5 0.0 1.1 9.5 0.0 2.9 3 0 0 3 3 3 0 Ribosomal L32p protein family zf-RanBP PF00641.18 gi|435852462|ref|YP_007314048.1| - 9.6 5.6 11.1 3.5 7.0 0.8 3.3 3 0 0 3 3 3 0 Zn-finger in Ran binding protein and others Peptidase_S49 PF01343.18 gi|435852463|ref|YP_007314049.1| - 4.8e-47 159.8 0.1 7.2e-47 159.2 0.1 1.3 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 gi|435852463|ref|YP_007314049.1| - 5.9e-06 26.3 0.3 0.00034 20.5 0.1 2.2 2 0 0 2 2 2 2 Clp protease Asparaginase_C PF17763.1 gi|435852463|ref|YP_007314049.1| - 0.096 12.9 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Glutaminase/Asparaginase C-terminal domain PLDc_N PF13396.6 gi|435852464|ref|YP_007314050.1| - 2.3e-11 43.4 5.2 2.3e-11 43.4 5.2 1.7 1 1 1 2 2 2 1 Phospholipase_D-nuclease N-terminal DUF4203 PF13886.6 gi|435852464|ref|YP_007314050.1| - 0.0051 16.5 2.5 0.0058 16.3 2.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4203) YbjM PF11045.8 gi|435852464|ref|YP_007314050.1| - 0.013 15.7 3.7 0.014 15.6 3.7 1.0 1 0 0 1 1 1 0 Putative inner membrane protein of Enterobacteriaceae FeoB_associated PF12669.7 gi|435852464|ref|YP_007314050.1| - 0.82 10.1 6.6 6 7.4 2.3 2.1 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein tRNA-synt_1g PF09334.11 gi|435852465|ref|YP_007314051.1| - 1.2e-150 501.6 0.1 1.5e-150 501.3 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|435852465|ref|YP_007314051.1| - 4.3e-30 103.7 0.2 9.8e-30 102.5 0.2 1.7 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|435852465|ref|YP_007314051.1| - 1.3e-19 69.9 0.1 5.5e-09 34.8 0.0 3.9 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|435852465|ref|YP_007314051.1| - 8.2e-16 58.3 0.6 1.3e-15 57.6 0.6 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|435852465|ref|YP_007314051.1| - 1.7e-14 53.9 0.3 5.7e-09 35.7 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|435852465|ref|YP_007314051.1| - 0.00026 20.1 0.0 0.028 13.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) DUF2228 PF10228.9 gi|435852465|ref|YP_007314051.1| - 0.079 12.7 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2228) TackOD1 PF18551.1 gi|435852465|ref|YP_007314051.1| - 0.13 11.9 0.2 0.24 11.0 0.2 1.3 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 UPF0547 PF10571.9 gi|435852465|ref|YP_007314051.1| - 0.2 11.8 2.9 0.89 9.7 2.9 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DZR PF12773.7 gi|435852465|ref|YP_007314051.1| - 4.9 7.2 8.1 22 5.2 8.2 1.9 1 1 0 1 1 1 0 Double zinc ribbon CYTH PF01928.21 gi|435852466|ref|YP_007314052.1| - 4.4e-33 114.7 0.4 5e-33 114.5 0.4 1.0 1 0 0 1 1 1 1 CYTH domain OB_aCoA_assoc PF01796.17 gi|435852467|ref|YP_007314053.1| - 8.6e-21 73.7 0.1 1.2e-20 73.2 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|435852467|ref|YP_007314053.1| - 4.8e-12 45.5 0.8 6.5e-12 45.1 0.8 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) FdhE PF04216.12 gi|435852467|ref|YP_007314053.1| - 0.011 15.6 0.1 0.013 15.4 0.1 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Thiolase_N PF00108.23 gi|435852468|ref|YP_007314054.1| - 2.1e-26 92.9 4.3 2.1e-26 92.9 4.3 1.8 2 1 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|435852468|ref|YP_007314054.1| - 3.5e-13 49.3 2.7 1.6e-11 43.9 0.1 2.6 1 1 1 2 2 2 2 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|435852468|ref|YP_007314054.1| - 1e-05 25.3 5.7 5.6e-05 22.8 4.8 2.5 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|435852468|ref|YP_007314054.1| - 0.0032 17.5 1.2 0.18 11.8 0.0 3.3 3 1 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.10 gi|435852468|ref|YP_007314054.1| - 4.8 7.1 6.0 13 5.7 0.8 2.8 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.10 gi|435852469|ref|YP_007314055.1| - 6.2e-10 39.1 0.0 1.7e-09 37.7 0.0 1.7 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.10 gi|435852469|ref|YP_007314055.1| - 1.2e-05 25.1 0.1 0.00076 19.2 0.0 2.6 2 1 1 3 3 3 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.17 gi|435852469|ref|YP_007314055.1| - 9.1e-05 22.4 0.4 0.00014 21.8 0.4 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_N PF00108.23 gi|435852469|ref|YP_007314055.1| - 0.00035 20.0 0.6 0.00065 19.1 0.6 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain WYL_3 PF18488.1 gi|435852469|ref|YP_007314055.1| - 0.12 12.7 0.0 0.31 11.5 0.0 1.6 1 0 0 1 1 1 0 WYL domain ACP_syn_III PF08545.10 gi|435852469|ref|YP_007314055.1| - 3 7.8 7.3 0.31 10.9 1.4 2.2 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HTH_3 PF01381.22 gi|435852470|ref|YP_007314056.1| - 9e-08 32.1 0.0 3e-07 30.4 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|435852470|ref|YP_007314056.1| - 0.00035 20.5 0.0 0.00085 19.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|435852470|ref|YP_007314056.1| - 0.0026 18.0 0.0 0.0059 16.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Cas_Cas4 PF01930.17 gi|435852471|ref|YP_007314057.1| - 4.8e-06 26.8 0.8 0.0037 17.4 0.1 2.4 2 1 0 2 2 2 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|435852471|ref|YP_007314057.1| - 0.0011 18.9 0.2 0.63 9.9 0.0 2.1 2 0 0 2 2 2 2 PD-(D/E)XK nuclease superfamily Tup_N PF08581.10 gi|435852472|ref|YP_007314058.1| - 0.0017 18.6 14.5 0.0068 16.7 0.9 3.8 3 1 0 3 3 3 2 Tup N-terminal Sec8_exocyst PF04048.14 gi|435852472|ref|YP_007314058.1| - 0.0032 17.4 0.5 0.0032 17.4 0.5 3.7 3 3 0 3 3 3 1 Sec8 exocyst complex component specific domain HsbA PF12296.8 gi|435852472|ref|YP_007314058.1| - 0.035 14.5 0.6 0.41 11.1 0.1 2.9 2 1 1 3 3 3 0 Hydrophobic surface binding protein A She9_MDM33 PF05546.11 gi|435852472|ref|YP_007314058.1| - 0.041 13.7 0.8 0.041 13.7 0.8 2.4 2 1 0 2 2 2 0 She9 / Mdm33 family FlxA PF14282.6 gi|435852472|ref|YP_007314058.1| - 0.044 13.8 16.0 0.57 10.2 4.0 2.6 2 0 0 2 2 2 0 FlxA-like protein DUF1192 PF06698.11 gi|435852472|ref|YP_007314058.1| - 0.12 12.4 1.7 2.2 8.4 0.1 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1192) Occludin_ELL PF07303.13 gi|435852472|ref|YP_007314058.1| - 0.16 12.7 11.4 0.16 12.7 0.5 3.4 2 2 0 2 2 2 0 Occludin homology domain BST2 PF16716.5 gi|435852472|ref|YP_007314058.1| - 0.24 12.0 0.2 0.24 12.0 0.2 3.3 3 1 1 4 4 4 0 Bone marrow stromal antigen 2 Baculo_PEP_C PF04513.12 gi|435852472|ref|YP_007314058.1| - 0.64 10.1 9.8 10 6.2 0.0 4.1 3 1 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2802 PF10975.8 gi|435852472|ref|YP_007314058.1| - 0.74 10.0 3.9 11 6.2 0.3 3.7 2 1 1 3 3 3 0 Protein of unknown function (DUF2802) Spc24 PF08286.11 gi|435852472|ref|YP_007314058.1| - 0.93 9.8 17.7 0.43 10.8 2.9 4.2 3 2 0 3 3 3 0 Spc24 subunit of Ndc80 FapA PF03961.13 gi|435852472|ref|YP_007314058.1| - 1.3 7.5 20.5 0.15 10.7 3.6 3.0 2 1 1 3 3 3 0 Flagellar Assembly Protein A PRANC PF09372.10 gi|435852472|ref|YP_007314058.1| - 1.7 9.0 10.2 0.17 12.2 0.4 3.6 2 1 2 4 4 4 0 PRANC domain Exonuc_VII_L PF02601.15 gi|435852472|ref|YP_007314058.1| - 2.7 7.5 15.1 1.1 8.8 3.0 2.4 1 1 1 2 2 2 0 Exonuclease VII, large subunit DUF1664 PF07889.12 gi|435852472|ref|YP_007314058.1| - 2.9 8.0 18.7 11 6.1 1.3 4.2 3 1 1 4 4 4 0 Protein of unknown function (DUF1664) SlyX PF04102.12 gi|435852472|ref|YP_007314058.1| - 3.9 8.2 10.7 44 4.8 0.0 4.5 4 1 0 4 4 4 0 SlyX CLZ PF16526.5 gi|435852472|ref|YP_007314058.1| - 8.6 6.8 9.9 1.8 9.0 0.1 3.7 2 2 2 4 4 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels ABC_tran PF00005.27 gi|435852473|ref|YP_007314059.1| - 2.7e-41 141.3 0.0 2.7e-22 79.7 0.0 2.4 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|435852473|ref|YP_007314059.1| - 1.7e-15 57.1 5.4 2e-05 24.1 0.1 4.2 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|435852473|ref|YP_007314059.1| - 6.3e-13 49.2 3.8 0.013 15.4 0.1 4.2 2 2 2 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system RLI PF04068.15 gi|435852473|ref|YP_007314059.1| - 1.7e-12 46.9 3.1 3.3e-12 46.0 3.1 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.27 gi|435852473|ref|YP_007314059.1| - 1.1e-07 31.4 3.4 1.1e-07 31.4 3.4 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Rad17 PF03215.15 gi|435852473|ref|YP_007314059.1| - 3.8e-07 30.2 0.0 0.029 14.3 0.0 2.3 2 0 0 2 2 2 2 Rad17 P-loop domain AAA_15 PF13175.6 gi|435852473|ref|YP_007314059.1| - 5.6e-06 26.3 0.0 0.27 10.9 0.0 3.3 3 0 0 3 3 3 2 AAA ATPase domain AAA_29 PF13555.6 gi|435852473|ref|YP_007314059.1| - 2.1e-05 24.2 0.2 0.23 11.2 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|435852473|ref|YP_007314059.1| - 2.2e-05 25.0 0.2 0.27 11.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|435852473|ref|YP_007314059.1| - 2.6e-05 24.7 0.1 0.22 11.9 0.0 3.1 2 1 0 2 2 2 2 AAA ATPase domain RNA_helicase PF00910.22 gi|435852473|ref|YP_007314059.1| - 4.5e-05 23.8 0.0 0.13 12.7 0.0 2.7 2 0 0 2 2 2 2 RNA helicase RsgA_GTPase PF03193.16 gi|435852473|ref|YP_007314059.1| - 7.8e-05 22.6 0.3 0.12 12.3 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase Fer4_6 PF12837.7 gi|435852473|ref|YP_007314059.1| - 0.0003 20.7 2.8 0.0003 20.7 2.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|435852473|ref|YP_007314059.1| - 0.00063 19.8 6.3 0.0012 18.9 6.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435852473|ref|YP_007314059.1| - 0.00073 19.6 7.4 0.0014 18.7 7.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435852473|ref|YP_007314059.1| - 0.0012 19.4 6.7 0.0034 18.0 6.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_24 PF13479.6 gi|435852473|ref|YP_007314059.1| - 0.0015 18.3 0.4 0.5 10.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain Fer4_2 PF12797.7 gi|435852473|ref|YP_007314059.1| - 0.0016 18.4 1.2 0.0016 18.4 1.2 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_18 PF13238.6 gi|435852473|ref|YP_007314059.1| - 0.0029 18.2 0.1 5.6 7.5 0.0 3.3 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 gi|435852473|ref|YP_007314059.1| - 0.0047 16.9 0.2 0.96 9.4 0.0 2.5 2 0 0 2 2 2 1 NACHT domain AAA_14 PF13173.6 gi|435852473|ref|YP_007314059.1| - 0.0048 16.9 1.0 1.7 8.7 0.0 3.4 3 0 0 3 3 3 1 AAA domain Fer4_10 PF13237.6 gi|435852473|ref|YP_007314059.1| - 0.0053 16.8 10.5 0.014 15.5 1.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA PF00004.29 gi|435852473|ref|YP_007314059.1| - 0.0056 17.1 0.1 1.4 9.4 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|435852473|ref|YP_007314059.1| - 0.0081 16.4 0.0 1.7 8.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.17 gi|435852473|ref|YP_007314059.1| - 0.0085 16.2 0.8 6.4 6.8 0.0 2.8 3 0 0 3 3 2 0 Helicase HerA, central domain NB-ARC PF00931.22 gi|435852473|ref|YP_007314059.1| - 0.0098 15.1 0.2 0.13 11.5 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain MMR_HSR1 PF01926.23 gi|435852473|ref|YP_007314059.1| - 0.013 15.6 0.0 1.7 8.8 0.0 2.7 3 0 0 3 3 2 0 50S ribosome-binding GTPase SbcCD_C PF13558.6 gi|435852473|ref|YP_007314059.1| - 0.015 15.5 0.0 15 5.9 0.0 3.0 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|435852473|ref|YP_007314059.1| - 0.032 14.4 0.0 3.1 8.0 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|435852473|ref|YP_007314059.1| - 0.05 13.3 1.1 2.9 7.6 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_5 PF07728.14 gi|435852473|ref|YP_007314059.1| - 0.062 13.3 0.3 24 4.9 0.1 3.0 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) MukB PF04310.12 gi|435852473|ref|YP_007314059.1| - 0.083 12.7 0.2 24 4.6 0.0 2.9 3 0 0 3 3 3 0 MukB N-terminal dNK PF01712.19 gi|435852473|ref|YP_007314059.1| - 0.086 12.7 0.0 4.7 7.0 0.0 2.4 2 0 0 2 2 2 0 Deoxynucleoside kinase PFK PF00365.20 gi|435852473|ref|YP_007314059.1| - 0.11 11.9 0.1 14 4.9 0.0 2.1 2 0 0 2 2 2 0 Phosphofructokinase VirE PF05272.11 gi|435852473|ref|YP_007314059.1| - 0.12 12.1 0.0 3.1 7.5 0.0 2.2 2 0 0 2 2 2 0 Virulence-associated protein E MeaB PF03308.16 gi|435852473|ref|YP_007314059.1| - 0.13 11.3 1.2 6.8 5.6 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_28 PF13521.6 gi|435852473|ref|YP_007314059.1| - 0.14 12.4 0.1 18 5.5 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.6 gi|435852473|ref|YP_007314059.1| - 0.17 11.4 0.9 9.2 5.8 0.0 3.2 4 0 0 4 4 4 0 AAA domain AAA_7 PF12775.7 gi|435852473|ref|YP_007314059.1| - 0.18 11.3 0.9 1.9 8.0 0.0 2.4 3 0 0 3 3 2 0 P-loop containing dynein motor region NTPase_1 PF03266.15 gi|435852473|ref|YP_007314059.1| - 0.2 11.5 1.9 13 5.6 0.0 3.0 3 0 0 3 3 3 0 NTPase Fer4_4 PF12800.7 gi|435852473|ref|YP_007314059.1| - 4.7 8.0 13.4 1.2 9.8 2.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|435852473|ref|YP_007314059.1| - 8.5 7.3 7.8 0.6 11.0 2.3 1.9 2 1 0 2 2 1 0 4Fe-4S dicluster domain Rab5ip PF07019.12 gi|435852474|ref|YP_007314060.1| - 2.1 9.0 6.8 4.3 8.0 6.8 1.5 1 1 0 1 1 1 0 Rab5-interacting protein (Rab5ip) Lactamase_B_2 PF12706.7 gi|435852475|ref|YP_007314061.1| - 9.9e-05 21.9 0.1 0.0003 20.3 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|435852475|ref|YP_007314061.1| - 0.0062 16.6 2.2 0.027 14.5 0.3 2.8 3 1 0 3 3 3 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|435852475|ref|YP_007314061.1| - 0.084 12.8 0.0 0.4 10.6 0.0 2.0 2 1 0 2 2 2 0 Beta-lactamase superfamily domain Thioredoxin PF00085.20 gi|435852476|ref|YP_007314062.1| - 1.4e-23 82.9 0.2 1.5e-23 82.7 0.2 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|435852476|ref|YP_007314062.1| - 2.6e-10 40.7 0.2 4.9e-10 39.8 0.2 1.4 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|435852476|ref|YP_007314062.1| - 1.3e-08 35.0 0.1 1.7e-05 25.0 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Glutaredoxin PF00462.24 gi|435852476|ref|YP_007314062.1| - 2.1e-06 27.8 0.2 3.9e-06 27.0 0.2 1.6 1 1 0 1 1 1 1 Glutaredoxin KaiB PF07689.12 gi|435852476|ref|YP_007314062.1| - 4.2e-06 26.4 0.1 4.8e-06 26.2 0.1 1.2 1 0 0 1 1 1 1 KaiB domain Thioredoxin_9 PF14595.6 gi|435852476|ref|YP_007314062.1| - 3.2e-05 23.7 0.1 3.9e-05 23.4 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.6 gi|435852476|ref|YP_007314062.1| - 4.4e-05 23.6 0.1 8e-05 22.8 0.1 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.6 gi|435852476|ref|YP_007314062.1| - 8.5e-05 22.5 0.0 9.7e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Redoxin PF08534.10 gi|435852476|ref|YP_007314062.1| - 0.00012 21.9 0.4 0.056 13.2 0.0 2.0 1 1 1 2 2 2 2 Redoxin DUF836 PF05768.14 gi|435852476|ref|YP_007314062.1| - 0.00017 22.0 0.1 0.00019 21.8 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) DSBA PF01323.20 gi|435852476|ref|YP_007314062.1| - 0.00024 20.9 0.1 0.0095 15.7 0.0 2.0 1 1 1 2 2 2 1 DSBA-like thioredoxin domain HyaE PF07449.11 gi|435852476|ref|YP_007314062.1| - 0.00024 21.0 0.0 0.00036 20.5 0.0 1.3 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_6 PF13848.6 gi|435852476|ref|YP_007314062.1| - 0.00053 19.9 0.0 0.00054 19.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.6 gi|435852476|ref|YP_007314062.1| - 0.0006 19.7 0.0 0.00072 19.4 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein AhpC-TSA PF00578.21 gi|435852476|ref|YP_007314062.1| - 0.0015 18.4 0.2 0.0023 17.8 0.2 1.3 1 1 0 1 1 1 1 AhpC/TSA family Calsequestrin PF01216.17 gi|435852476|ref|YP_007314062.1| - 0.0022 17.1 0.1 0.0026 16.8 0.1 1.0 1 0 0 1 1 1 1 Calsequestrin OST3_OST6 PF04756.13 gi|435852476|ref|YP_007314062.1| - 0.0058 16.0 0.0 0.0058 16.0 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family DUF953 PF06110.11 gi|435852476|ref|YP_007314062.1| - 0.014 15.0 0.3 0.052 13.2 0.3 1.8 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) ABC_transp_aux PF09822.9 gi|435852476|ref|YP_007314062.1| - 0.017 14.6 0.1 0.018 14.5 0.1 1.1 1 0 0 1 1 1 0 ABC-type uncharacterized transport system TrbC_Ftype PF09673.10 gi|435852476|ref|YP_007314062.1| - 0.058 13.4 0.0 0.064 13.3 0.0 1.2 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein PHB_acc_N PF07879.11 gi|435852476|ref|YP_007314062.1| - 0.07 13.2 0.4 0.11 12.6 0.4 1.3 1 0 0 1 1 1 0 PHB/PHA accumulation regulator DNA-binding domain QRPTase_C PF01729.19 gi|435852477|ref|YP_007314063.1| - 2.6e-30 105.4 0.1 4.3e-30 104.7 0.1 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|435852477|ref|YP_007314063.1| - 2.2e-16 59.7 0.0 4e-16 58.8 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain B12-binding PF02310.19 gi|435852477|ref|YP_007314063.1| - 0.07 13.2 0.1 0.25 11.4 0.0 1.9 2 0 0 2 2 2 0 B12 binding domain TaqI_C PF12950.7 gi|435852478|ref|YP_007314064.1| - 1.7e-21 76.5 2.3 5.4e-21 74.9 1.0 2.4 2 0 0 2 2 2 1 TaqI-like C-terminal specificity domain Eco57I PF07669.11 gi|435852478|ref|YP_007314064.1| - 4e-16 59.4 0.0 1.5e-15 57.6 0.0 2.0 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.16 gi|435852478|ref|YP_007314064.1| - 2.1e-14 53.5 0.6 6.6e-09 35.5 0.0 3.8 4 1 0 4 4 4 2 N-6 DNA Methylase HSDR_N PF04313.14 gi|435852478|ref|YP_007314064.1| - 1e-09 38.6 0.0 4.1e-07 30.1 0.0 3.0 2 1 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.6 gi|435852478|ref|YP_007314064.1| - 0.00011 22.1 0.0 0.00054 19.9 0.0 2.2 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) UPF0020 PF01170.18 gi|435852478|ref|YP_007314064.1| - 0.0012 18.6 0.1 0.12 12.1 0.1 3.0 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 AMP-binding PF00501.28 gi|435852479|ref|YP_007314065.1| - 6.4e-97 324.8 0.0 7.6e-97 324.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|435852479|ref|YP_007314065.1| - 6.4e-26 91.1 0.4 1.9e-25 89.6 0.0 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|435852479|ref|YP_007314065.1| - 7.9e-17 60.9 6.1 1.9e-16 59.7 6.1 1.7 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus NAC PF01849.18 gi|435852480|ref|YP_007314066.1| - 7.8e-17 61.0 2.1 7.8e-17 61.0 2.1 1.6 2 0 0 2 2 2 1 NAC domain UBA_4 PF14555.6 gi|435852480|ref|YP_007314066.1| - 0.00044 20.0 0.1 0.00062 19.5 0.1 1.3 1 0 0 1 1 1 1 UBA-like domain HTH_10 PF04967.12 gi|435852480|ref|YP_007314066.1| - 0.021 14.6 0.0 0.32 10.8 0.0 2.1 2 0 0 2 2 2 0 HTH DNA binding domain HOIP-UBA PF16678.5 gi|435852480|ref|YP_007314066.1| - 0.09 12.8 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 HOIP UBA domain pair UBA PF00627.31 gi|435852480|ref|YP_007314066.1| - 0.55 10.2 0.2 0.55 10.2 0.2 2.2 3 0 0 3 3 3 0 UBA/TS-N domain DUF2786 PF10979.8 gi|435852480|ref|YP_007314066.1| - 1 9.4 5.3 0.52 10.3 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2786) Fe-S_biosyn PF01521.20 gi|435852481|ref|YP_007314067.1| - 5.3e-13 49.1 0.0 6.4e-13 48.9 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis ATPase PF06745.13 gi|435852483|ref|YP_007314069.1| - 8.6e-27 94.0 0.0 1.2e-26 93.5 0.0 1.2 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.11 gi|435852483|ref|YP_007314069.1| - 7.2e-05 22.1 0.3 0.12 11.5 0.1 2.1 2 0 0 2 2 2 2 PAXNEB protein DnaB_C PF03796.15 gi|435852483|ref|YP_007314069.1| - 0.062 12.6 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain PRA-CH PF01502.18 gi|435852484|ref|YP_007314070.1| - 1e-35 121.4 1.3 1.4e-35 120.9 1.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase T2SSE PF00437.20 gi|435852485|ref|YP_007314071.1| - 3.4e-12 46.0 0.3 2.4e-11 43.2 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein KH_1 PF00013.29 gi|435852485|ref|YP_007314071.1| - 0.00013 21.8 3.0 0.00022 21.0 0.3 2.6 2 0 0 2 2 2 1 KH domain PIN PF01850.21 gi|435852485|ref|YP_007314071.1| - 0.00083 19.9 0.1 0.0022 18.5 0.1 1.8 1 0 0 1 1 1 1 PIN domain KH_2 PF07650.17 gi|435852485|ref|YP_007314071.1| - 0.0013 18.5 1.1 0.0065 16.3 1.1 2.3 1 0 0 1 1 1 1 KH domain IstB_IS21 PF01695.17 gi|435852485|ref|YP_007314071.1| - 0.0017 18.1 0.0 0.0037 17.0 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein ATPase PF06745.13 gi|435852485|ref|YP_007314071.1| - 0.0042 16.5 0.2 0.028 13.8 0.0 2.3 3 0 0 3 3 3 1 KaiC AAA_30 PF13604.6 gi|435852485|ref|YP_007314071.1| - 0.0068 16.1 0.1 0.38 10.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|435852485|ref|YP_007314071.1| - 0.0073 16.7 0.0 0.021 15.2 0.0 1.7 2 0 0 2 2 1 1 AAA ATPase domain AAA_7 PF12775.7 gi|435852485|ref|YP_007314071.1| - 0.008 15.7 0.0 0.015 14.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region KH_4 PF13083.6 gi|435852485|ref|YP_007314071.1| - 0.0084 16.0 0.1 0.031 14.2 0.1 2.0 1 0 0 1 1 1 1 KH domain AAA_25 PF13481.6 gi|435852485|ref|YP_007314071.1| - 0.012 15.2 0.0 0.03 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|435852485|ref|YP_007314071.1| - 0.013 15.4 0.0 0.044 13.7 0.0 1.9 1 0 0 1 1 1 0 NTPase AAA_18 PF13238.6 gi|435852485|ref|YP_007314071.1| - 0.022 15.3 0.0 0.068 13.7 0.0 1.9 2 0 0 2 2 1 0 AAA domain RuvB_N PF05496.12 gi|435852485|ref|YP_007314071.1| - 0.024 14.4 0.0 0.075 12.8 0.0 1.8 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|435852485|ref|YP_007314071.1| - 0.027 14.6 0.0 0.062 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|435852485|ref|YP_007314071.1| - 0.028 13.6 1.8 0.19 10.9 0.0 2.6 3 0 0 3 3 3 0 TIP49 P-loop domain AAA_29 PF13555.6 gi|435852485|ref|YP_007314071.1| - 0.039 13.7 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|435852485|ref|YP_007314071.1| - 0.039 14.2 0.1 1.1 9.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|435852485|ref|YP_007314071.1| - 0.041 14.3 0.3 0.2 12.0 0.0 2.3 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.17 gi|435852485|ref|YP_007314071.1| - 0.046 13.4 0.0 0.31 10.7 0.0 2.2 2 1 0 2 2 1 0 Thymidylate kinase CbiA PF01656.23 gi|435852485|ref|YP_007314071.1| - 0.059 13.4 0.0 0.15 12.2 0.0 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_11 PF13086.6 gi|435852485|ref|YP_007314071.1| - 0.062 13.1 0.1 0.15 11.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|435852485|ref|YP_007314071.1| - 0.066 13.1 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain Zeta_toxin PF06414.12 gi|435852485|ref|YP_007314071.1| - 0.084 12.1 0.0 0.19 11.0 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|435852485|ref|YP_007314071.1| - 0.14 11.8 0.5 0.31 10.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain PrsW-protease PF13367.6 gi|435852486|ref|YP_007314072.1| - 0.017 14.6 2.0 0.018 14.5 1.6 1.3 1 1 0 1 1 1 0 PrsW family intramembrane metalloprotease DUF21 PF01595.20 gi|435852486|ref|YP_007314072.1| - 0.026 14.2 0.2 0.029 14.1 0.2 1.1 1 0 0 1 1 1 0 Cyclin M transmembrane N-terminal domain TraL PF07178.11 gi|435852486|ref|YP_007314072.1| - 0.063 13.7 0.1 0.063 13.7 0.1 1.7 2 0 0 2 2 2 0 TraL protein DUF1043 PF06295.12 gi|435852486|ref|YP_007314072.1| - 0.36 10.8 1.5 3.6 7.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1043) RseC_MucC PF04246.12 gi|435852486|ref|YP_007314072.1| - 6 6.8 5.8 1.9 8.5 0.6 2.1 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC MTHFR PF02219.17 gi|435852487|ref|YP_007314073.1| - 1.8e-39 135.8 0.0 2.1e-39 135.6 0.0 1.0 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase Hydrolase_like PF13242.6 gi|435852487|ref|YP_007314073.1| - 0.05 13.7 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like F420_ligase PF01996.16 gi|435852488|ref|YP_007314074.1| - 1.3e-61 208.0 0.1 1.5e-61 207.8 0.1 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Pyr_redox_2 PF07992.14 gi|435852489|ref|YP_007314075.1| - 2.1e-42 145.4 0.0 2.9e-42 144.9 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|435852489|ref|YP_007314075.1| - 2.9e-23 82.2 0.3 6.8e-23 81.0 0.1 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|435852489|ref|YP_007314075.1| - 6.6e-16 58.6 0.0 7.3e-15 55.3 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|435852489|ref|YP_007314075.1| - 1.4e-08 34.4 0.0 2.3e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|435852489|ref|YP_007314075.1| - 2.7e-05 23.5 0.0 0.088 11.9 0.0 2.6 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.18 gi|435852489|ref|YP_007314075.1| - 0.0049 16.8 0.5 0.15 12.0 0.0 2.7 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|435852489|ref|YP_007314075.1| - 0.077 13.4 0.0 0.32 11.5 0.0 2.1 2 0 0 2 2 2 0 Putative NAD(P)-binding HI0933_like PF03486.14 gi|435852489|ref|YP_007314075.1| - 0.099 11.3 0.2 0.36 9.5 0.0 1.8 2 0 0 2 2 2 0 HI0933-like protein HMGL-like PF00682.19 gi|435852490|ref|YP_007314076.1| - 4.7e-86 288.6 2.5 4.7e-86 288.6 2.5 1.7 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|435852490|ref|YP_007314076.1| - 1.7e-31 108.9 4.3 3.2e-31 108.0 4.3 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Phage_holin_6_1 PF09682.10 gi|435852490|ref|YP_007314076.1| - 0.22 11.9 2.4 29 5.2 0.0 3.2 3 0 0 3 3 3 0 Bacteriophage holin of superfamily 6 (Holin_LLH) TatD_DNase PF01026.21 gi|435852491|ref|YP_007314077.1| - 2.1e-61 207.5 0.0 2.4e-61 207.3 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 gi|435852491|ref|YP_007314077.1| - 0.00074 18.9 0.3 0.0017 17.8 0.3 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_2 PF04909.14 gi|435852491|ref|YP_007314077.1| - 0.048 13.4 0.0 0.14 11.9 0.0 1.9 1 1 0 1 1 1 0 Amidohydrolase Lactamase_B PF00753.27 gi|435852492|ref|YP_007314078.1| - 7e-28 98.0 0.3 8.1e-28 97.8 0.3 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|435852492|ref|YP_007314078.1| - 1.2e-05 25.0 0.2 2.2e-05 24.1 0.2 1.4 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|435852492|ref|YP_007314078.1| - 0.026 13.9 0.2 0.043 13.2 0.2 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|435852492|ref|YP_007314078.1| - 0.053 13.4 0.3 0.19 11.6 0.3 1.9 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Radical_SAM_N PF08497.10 gi|435852493|ref|YP_007314079.1| - 1.7e-128 428.1 0.0 2.2e-128 427.7 0.0 1.2 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.8 gi|435852493|ref|YP_007314079.1| - 1.5e-25 90.2 0.0 2.3e-25 89.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.21 gi|435852493|ref|YP_007314079.1| - 8.5e-14 52.3 0.4 5.9e-13 49.5 0.5 2.1 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|435852493|ref|YP_007314079.1| - 0.00078 19.5 0.0 0.1 12.7 0.0 3.1 2 1 0 2 2 2 1 B12 binding domain DUF523 PF04463.12 gi|435852493|ref|YP_007314079.1| - 0.13 12.3 0.1 0.34 11.0 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF523) UPF0113_N PF17833.1 gi|435852494|ref|YP_007314080.1| - 0.0053 17.3 0.0 0.013 16.1 0.0 1.7 1 0 0 1 1 1 1 UPF0113 Pre-PUA domain SEP PF08059.13 gi|435852494|ref|YP_007314080.1| - 0.12 13.0 0.2 2.1 9.0 0.0 2.4 2 0 0 2 2 2 0 SEP domain Peptidase_M10 PF00413.24 gi|435852495|ref|YP_007314081.1| - 8.4e-14 51.7 0.0 1.2e-13 51.2 0.0 1.3 1 0 0 1 1 1 1 Matrixin Reprolysin_5 PF13688.6 gi|435852495|ref|YP_007314081.1| - 0.00072 19.8 1.6 0.00089 19.5 1.6 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_4 PF13583.6 gi|435852495|ref|YP_007314081.1| - 0.0021 17.7 1.9 0.0027 17.4 1.8 1.5 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|435852495|ref|YP_007314081.1| - 0.0048 15.9 1.3 0.0059 15.6 1.3 1.4 1 1 0 1 1 1 1 Peptidase M66 Reprolysin_3 PF13582.6 gi|435852495|ref|YP_007314081.1| - 0.01 16.4 0.8 0.023 15.2 0.8 1.8 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Astacin PF01400.24 gi|435852495|ref|YP_007314081.1| - 0.019 14.6 0.1 1.3 8.6 0.0 2.2 2 0 0 2 2 2 0 Astacin (Peptidase family M12A) Reprolysin_2 PF13574.6 gi|435852495|ref|YP_007314081.1| - 0.16 11.8 3.9 0.27 11.1 3.0 1.7 1 1 1 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like DUF4503 PF14951.6 gi|435852495|ref|YP_007314081.1| - 0.18 10.2 0.0 0.25 9.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4503) CCG PF02754.16 gi|435852496|ref|YP_007314082.1| - 3.9e-29 100.7 4.3 3.7e-14 52.7 0.3 2.7 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|435852496|ref|YP_007314082.1| - 1.1e-11 45.0 3.3 1.1e-11 45.0 3.3 2.5 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435852496|ref|YP_007314082.1| - 1.3e-09 38.5 5.1 1.3e-09 38.5 5.1 2.7 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435852496|ref|YP_007314082.1| - 7.3e-08 32.9 6.7 7.3e-08 32.9 6.7 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|435852496|ref|YP_007314082.1| - 1.6e-07 31.4 20.1 4.1e-06 26.8 10.8 3.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|435852496|ref|YP_007314082.1| - 1.1e-05 25.1 20.8 0.00071 19.3 1.6 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435852496|ref|YP_007314082.1| - 3.2e-05 24.0 9.5 3.2e-05 24.0 9.5 3.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435852496|ref|YP_007314082.1| - 0.00055 20.8 13.9 0.002 19.0 11.3 3.0 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|435852496|ref|YP_007314082.1| - 0.0011 19.0 3.7 0.0011 19.0 3.7 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|435852496|ref|YP_007314082.1| - 0.0021 18.1 15.1 0.06 13.5 0.4 3.5 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435852496|ref|YP_007314082.1| - 0.006 17.0 2.1 0.006 17.0 2.1 4.2 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|435852496|ref|YP_007314082.1| - 0.012 16.5 5.3 0.012 16.5 5.3 3.7 4 0 0 4 4 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|435852496|ref|YP_007314082.1| - 0.12 13.0 13.3 0.57 10.8 0.7 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I zinc_ribbon_5 PF13719.6 gi|435852496|ref|YP_007314082.1| - 0.12 12.2 10.7 6.1 6.7 0.1 4.3 4 0 0 4 4 4 0 zinc-ribbon domain Fer4_18 PF13746.6 gi|435852496|ref|YP_007314082.1| - 0.58 10.4 10.4 1.3 9.2 0.8 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain FAD-oxidase_C PF02913.19 gi|435852497|ref|YP_007314083.1| - 8.8e-57 192.6 0.0 1.1e-56 192.2 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|435852497|ref|YP_007314083.1| - 1.4e-44 151.2 0.1 2.6e-44 150.3 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain DUF5591 PF17884.1 gi|435852498|ref|YP_007314084.1| - 1.7e-62 209.9 0.1 2.8e-62 209.1 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT PF01702.18 gi|435852498|ref|YP_007314084.1| - 2.6e-22 79.4 0.9 2.3e-21 76.3 0.1 2.4 3 0 0 3 3 3 1 Queuine tRNA-ribosyltransferase PUA PF01472.20 gi|435852498|ref|YP_007314084.1| - 3.1e-13 49.5 0.1 2e-12 46.9 0.1 2.3 2 0 0 2 2 2 1 PUA domain TGT_C2 PF14810.6 gi|435852498|ref|YP_007314084.1| - 3.3e-12 46.3 0.0 1.1e-11 44.7 0.0 1.9 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase CCDC-167 PF15188.6 gi|435852498|ref|YP_007314084.1| - 0.13 12.7 1.4 19 5.7 0.2 2.4 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 Acetyltransf_1 PF00583.25 gi|435852499|ref|YP_007314085.1| - 8e-16 58.3 0.1 1.1e-15 57.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|435852499|ref|YP_007314085.1| - 2.3e-14 53.4 0.1 2.7e-14 53.2 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|435852499|ref|YP_007314085.1| - 1.2e-12 48.1 0.5 2.5e-12 47.1 0.2 1.6 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|435852499|ref|YP_007314085.1| - 2.2e-08 33.9 0.0 3.2e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|435852499|ref|YP_007314085.1| - 6.9e-06 26.8 0.1 1.9e-05 25.3 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|435852499|ref|YP_007314085.1| - 0.0017 18.4 0.0 0.016 15.3 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|435852499|ref|YP_007314085.1| - 0.024 14.8 0.2 0.034 14.3 0.2 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|435852499|ref|YP_007314085.1| - 0.041 13.6 0.0 0.056 13.2 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_8 PF13523.6 gi|435852499|ref|YP_007314085.1| - 0.051 13.3 0.1 0.13 12.0 0.1 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|435852499|ref|YP_007314085.1| - 0.15 12.2 0.0 0.3 11.3 0.0 1.5 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase UPF0058 PF01893.16 gi|435852500|ref|YP_007314086.1| - 6.9e-33 112.8 0.7 8.1e-33 112.6 0.7 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 ATP-synt_10 PF05176.14 gi|435852500|ref|YP_007314086.1| - 0.047 12.9 0.1 0.077 12.2 0.1 1.5 1 1 0 1 1 1 0 ATP10 protein Toprim_4 PF13662.6 gi|435852501|ref|YP_007314087.1| - 8.4e-12 45.4 0.4 3.2e-11 43.5 0.3 2.1 1 1 1 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|435852501|ref|YP_007314087.1| - 2.6e-07 31.0 0.0 6.7e-07 29.7 0.0 1.7 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|435852501|ref|YP_007314087.1| - 0.00011 22.3 0.1 0.00055 20.1 0.1 2.2 2 0 0 2 2 2 1 Toprim domain DUF5499 PF17603.2 gi|435852501|ref|YP_007314087.1| - 0.12 13.0 0.0 25 5.6 0.0 2.8 2 0 0 2 2 2 0 Family of unknown function (DUF5499) Pyr_redox_2 PF07992.14 gi|435852502|ref|YP_007314088.1| - 8e-47 159.9 1.2 1.1e-46 159.4 1.2 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|435852502|ref|YP_007314088.1| - 7.8e-23 80.8 2.0 7.4e-17 61.7 0.2 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|435852502|ref|YP_007314088.1| - 2.7e-13 49.8 0.8 1.1e-10 41.2 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|435852502|ref|YP_007314088.1| - 1.7e-12 47.5 0.0 1.3e-11 44.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.24 gi|435852502|ref|YP_007314088.1| - 5e-08 32.9 7.5 0.065 12.8 1.1 4.1 3 1 1 4 4 4 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|435852502|ref|YP_007314088.1| - 7.7e-08 31.4 2.8 0.048 12.3 0.0 4.0 3 1 1 4 4 4 3 HI0933-like protein K_oxygenase PF13434.6 gi|435852502|ref|YP_007314088.1| - 2.7e-07 30.1 0.2 1.7e-06 27.4 0.0 2.0 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|435852502|ref|YP_007314088.1| - 3.8e-07 29.5 2.4 0.34 10.0 0.0 3.3 3 0 0 3 3 3 3 FAD binding domain GIDA PF01134.22 gi|435852502|ref|YP_007314088.1| - 3.1e-05 23.2 1.1 0.0001 21.6 0.0 2.4 3 0 0 3 3 3 1 Glucose inhibited division protein A Sacchrp_dh_NADP PF03435.18 gi|435852502|ref|YP_007314088.1| - 4.4e-05 23.7 0.4 0.12 12.7 0.1 2.7 2 0 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|435852502|ref|YP_007314088.1| - 0.00012 21.5 2.7 0.16 11.4 0.2 3.2 2 1 1 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|435852502|ref|YP_007314088.1| - 0.00014 22.0 1.0 0.067 13.4 0.2 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|435852502|ref|YP_007314088.1| - 0.00015 22.2 0.0 0.011 16.2 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|435852502|ref|YP_007314088.1| - 0.00017 21.5 0.6 0.0031 17.4 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.7 gi|435852502|ref|YP_007314088.1| - 0.00039 19.9 7.8 0.016 14.6 0.7 2.9 2 1 1 3 3 3 2 FAD dependent oxidoreductase ApbA PF02558.16 gi|435852502|ref|YP_007314088.1| - 0.0014 18.2 0.6 0.51 10.0 0.3 2.9 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|435852502|ref|YP_007314088.1| - 0.009 16.6 2.7 1.6 9.3 0.4 3.1 3 1 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.19 gi|435852502|ref|YP_007314088.1| - 0.014 14.6 0.6 0.061 12.6 0.1 2.0 2 0 0 2 2 2 0 FAD binding domain Thi4 PF01946.17 gi|435852502|ref|YP_007314088.1| - 0.017 14.3 0.6 0.29 10.4 0.1 2.3 2 0 0 2 2 2 0 Thi4 family TrkA_N PF02254.18 gi|435852502|ref|YP_007314088.1| - 0.021 15.1 0.1 5.2 7.4 0.0 2.6 2 0 0 2 2 2 0 TrkA-N domain Shikimate_DH PF01488.20 gi|435852502|ref|YP_007314088.1| - 0.032 14.3 2.5 0.45 10.6 0.2 2.9 2 1 1 3 3 3 0 Shikimate / quinate 5-dehydrogenase ThiF PF00899.21 gi|435852502|ref|YP_007314088.1| - 0.048 13.0 1.5 0.1 11.9 0.1 2.0 2 0 0 2 2 2 0 ThiF family PglD_N PF17836.1 gi|435852502|ref|YP_007314088.1| - 0.048 14.3 0.8 9.9 6.9 0.0 2.8 2 0 0 2 2 2 0 PglD N-terminal domain Lycopene_cycl PF05834.12 gi|435852502|ref|YP_007314088.1| - 0.21 10.6 1.1 2.9 6.8 0.0 2.6 3 0 0 3 3 3 0 Lycopene cyclase protein RTC PF01137.21 gi|435852503|ref|YP_007314089.1| - 1.7e-78 262.9 0.1 1.9e-78 262.7 0.1 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|435852503|ref|YP_007314089.1| - 1.6e-13 51.1 0.1 3.4e-13 50.0 0.1 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain PTS_2-RNA PF01885.16 gi|435852504|ref|YP_007314090.1| - 2.1e-25 89.8 0.0 2.7e-25 89.5 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family Prim_Zn_Ribbon PF08273.12 gi|435852504|ref|YP_007314090.1| - 0.19 12.1 1.4 0.22 11.8 0.2 1.7 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase tRNA_anti-codon PF01336.25 gi|435852505|ref|YP_007314091.1| - 7.3e-24 83.6 5.7 1.7e-10 40.8 0.5 3.5 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|435852505|ref|YP_007314091.1| - 4.3e-13 49.5 1.3 5.1e-06 26.4 0.1 3.1 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 REPA_OB_2 PF16900.5 gi|435852505|ref|YP_007314091.1| - 3.5e-09 36.5 2.6 0.0015 18.4 0.2 3.3 3 0 0 3 3 3 2 Replication protein A OB domain DUF3127 PF11325.8 gi|435852505|ref|YP_007314091.1| - 0.00021 21.4 0.2 0.059 13.6 0.0 3.1 2 1 0 2 2 2 1 Domain of unknown function (DUF3127) Rep_fac-A_C PF08646.10 gi|435852505|ref|YP_007314091.1| - 0.004 16.9 0.3 4.8 6.9 0.0 3.2 3 0 0 3 3 3 1 Replication factor-A C terminal domain DUF2240 PF09999.9 gi|435852505|ref|YP_007314091.1| - 0.0075 15.9 0.0 0.016 14.8 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) UvrB_inter PF17757.1 gi|435852505|ref|YP_007314091.1| - 0.03 14.5 0.8 4.2 7.6 0.0 3.3 3 1 0 3 3 3 0 UvrB interaction domain CBS PF00571.28 gi|435852506|ref|YP_007314092.1| - 5.6e-24 84.4 10.8 8e-13 48.6 0.2 2.5 3 0 0 3 3 3 2 CBS domain PhnA_Zn_Ribbon PF08274.12 gi|435852506|ref|YP_007314092.1| - 0.0017 18.2 0.7 0.0032 17.4 0.7 1.4 1 0 0 1 1 1 1 PhnA Zinc-Ribbon DUF1451 PF07295.11 gi|435852506|ref|YP_007314092.1| - 0.086 12.9 0.8 0.2 11.7 0.8 1.6 1 0 0 1 1 1 0 Zinc-ribbon containing domain CBS PF00571.28 gi|435852507|ref|YP_007314093.1| - 1.3e-48 163.2 10.1 7.7e-14 51.9 0.1 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|435852508|ref|YP_007314094.1| - 1.9e-53 178.7 8.2 1.8e-13 50.7 0.1 4.3 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|435852509|ref|YP_007314095.1| - 2.8e-35 120.5 15.8 1.8e-11 44.3 0.1 4.2 4 0 0 4 4 4 4 CBS domain Acetyltransf_10 PF13673.7 gi|435852509|ref|YP_007314095.1| - 0.13 12.2 0.1 19 5.2 0.1 3.0 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain Delta_lysin PF05372.11 gi|435852509|ref|YP_007314095.1| - 8.2 5.8 8.9 0.16 11.3 1.6 2.0 2 0 0 2 2 2 0 Delta lysin family CBS PF00571.28 gi|435852510|ref|YP_007314096.1| - 3.8e-42 142.5 12.0 7.3e-12 45.6 0.1 4.1 4 0 0 4 4 4 4 CBS domain GDI PF00996.18 gi|435852510|ref|YP_007314096.1| - 0.065 11.7 0.7 0.13 10.7 0.2 1.7 2 0 0 2 2 2 0 GDP dissociation inhibitor DUF4342 PF14242.6 gi|435852510|ref|YP_007314096.1| - 0.073 13.1 4.1 0.56 10.2 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4342) Lig_C PF18330.1 gi|435852511|ref|YP_007314097.1| - 3.1e-42 143.5 2.0 3.1e-42 143.5 2.0 1.7 2 0 0 2 2 2 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|435852511|ref|YP_007314097.1| - 1.7e-17 64.2 0.0 2.9e-17 63.4 0.0 1.3 1 0 0 1 1 1 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|435852511|ref|YP_007314097.1| - 1.9e-07 30.9 0.0 1.2e-05 25.1 0.0 2.3 1 1 0 1 1 1 1 ATP dependent DNA ligase domain UvrA_inter PF17760.1 gi|435852511|ref|YP_007314097.1| - 0.11 12.5 0.1 0.91 9.6 0.0 2.5 3 0 0 3 3 3 0 UvrA interaction domain GTP_EFTU_D2 PF03144.25 gi|435852512|ref|YP_007314098.1| - 4e-09 36.7 0.3 2.5e-08 34.2 0.1 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU PF00009.27 gi|435852512|ref|YP_007314098.1| - 8.3e-05 22.2 0.1 0.029 13.9 0.0 2.2 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|435852512|ref|YP_007314098.1| - 0.0012 18.8 0.7 0.037 13.9 0.1 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 4 AAA_24 PF13479.6 gi|435852512|ref|YP_007314098.1| - 0.01 15.6 0.2 0.02 14.6 0.2 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|435852512|ref|YP_007314098.1| - 0.027 14.5 0.2 0.27 11.3 0.0 2.5 3 0 0 3 3 3 0 AAA domain MMR_HSR1_Xtn PF16897.5 gi|435852512|ref|YP_007314098.1| - 0.032 14.3 0.0 0.066 13.2 0.0 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain AAA_15 PF13175.6 gi|435852512|ref|YP_007314098.1| - 0.059 13.1 1.4 1.5 8.5 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain PduV-EutP PF10662.9 gi|435852512|ref|YP_007314098.1| - 0.11 12.2 1.0 0.25 11.1 0.4 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DUF3541 PF12060.8 gi|435852514|ref|YP_007314100.1| - 0.059 13.1 0.0 0.24 11.1 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3541) Meth_synt_2 PF01717.18 gi|435852514|ref|YP_007314100.1| - 0.095 12.0 0.1 2.7 7.2 0.0 2.7 2 1 0 2 2 2 0 Cobalamin-independent synthase, Catalytic domain SSF PF00474.17 gi|435852516|ref|YP_007314102.1| - 1.7e-37 129.2 34.6 2.4e-37 128.8 34.6 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family MIG-14_Wnt-bd PF06664.12 gi|435852516|ref|YP_007314102.1| - 0.011 14.9 0.7 0.011 14.9 0.7 2.8 1 1 1 2 2 2 0 Wnt-binding factor required for Wnt secretion Nramp PF01566.18 gi|435852516|ref|YP_007314102.1| - 0.076 12.0 38.6 0.0073 15.3 31.7 2.6 1 1 1 2 2 2 0 Natural resistance-associated macrophage protein DUF87 PF01935.17 gi|435852518|ref|YP_007314104.1| - 5.8e-13 49.5 0.0 1.3e-12 48.3 0.0 1.6 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|435852518|ref|YP_007314104.1| - 2.8e-08 32.8 0.0 8.6e-05 21.3 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA PF00004.29 gi|435852518|ref|YP_007314104.1| - 1.5e-06 28.7 0.1 0.068 13.6 0.1 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.7 gi|435852518|ref|YP_007314104.1| - 1.1e-05 24.5 0.0 0.063 12.2 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.6 gi|435852518|ref|YP_007314104.1| - 1.8e-05 25.0 0.0 0.00071 19.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|435852518|ref|YP_007314104.1| - 0.00016 22.1 0.0 0.031 14.6 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain ResIII PF04851.15 gi|435852518|ref|YP_007314104.1| - 0.00026 21.1 0.0 0.034 14.2 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|435852518|ref|YP_007314104.1| - 0.00038 20.3 0.0 0.97 9.2 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase TrwB_AAD_bind PF10412.9 gi|435852518|ref|YP_007314104.1| - 0.00059 18.9 0.0 0.0018 17.3 0.0 1.6 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_7 PF12775.7 gi|435852518|ref|YP_007314104.1| - 0.001 18.6 0.0 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|435852518|ref|YP_007314104.1| - 0.0061 16.9 0.0 0.014 15.8 0.0 1.6 1 0 0 1 1 1 1 RNA helicase FtsK_SpoIIIE PF01580.18 gi|435852518|ref|YP_007314104.1| - 0.0079 15.6 0.0 0.1 11.9 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family ABC_tran PF00005.27 gi|435852518|ref|YP_007314104.1| - 0.035 14.6 0.0 0.081 13.4 0.0 1.6 1 0 0 1 1 1 0 ABC transporter T2SSE PF00437.20 gi|435852518|ref|YP_007314104.1| - 0.038 13.0 0.0 0.078 12.0 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|435852518|ref|YP_007314104.1| - 0.041 14.0 0.0 0.12 12.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|435852518|ref|YP_007314104.1| - 0.053 12.7 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase Zot PF05707.12 gi|435852518|ref|YP_007314104.1| - 0.056 13.1 0.0 0.14 11.8 0.0 1.6 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) DUF2075 PF09848.9 gi|435852518|ref|YP_007314104.1| - 0.071 12.3 0.0 0.44 9.7 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|435852518|ref|YP_007314104.1| - 0.12 12.7 0.0 0.25 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain RHH_1 PF01402.21 gi|435852519|ref|YP_007314105.1| - 0.0012 18.7 0.2 0.0058 16.5 0.0 2.0 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family Latarcin PF10279.9 gi|435852519|ref|YP_007314105.1| - 0.01 16.2 0.3 0.011 16.1 0.3 1.0 1 0 0 1 1 1 0 Latarcin precursor Tho1_MOS11_C PF18592.1 gi|435852519|ref|YP_007314105.1| - 0.032 14.0 0.1 0.048 13.5 0.1 1.4 1 1 0 1 1 1 0 Tho1/MOS11 C-terminal domain AP_endonuc_2 PF01261.24 gi|435852520|ref|YP_007314106.1| - 2.8e-34 118.4 0.1 3.5e-34 118.1 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HMGL-like PF00682.19 gi|435852520|ref|YP_007314106.1| - 0.1 12.2 0.8 1.4 8.4 0.8 2.1 1 1 0 1 1 1 0 HMGL-like RNA_binding PF01877.17 gi|435852521|ref|YP_007314107.1| - 3.3e-16 59.6 0.0 5.4e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 RNA binding AAA_17 PF13207.6 gi|435852522|ref|YP_007314108.1| - 2.5e-13 50.6 0.1 4.3e-13 49.8 0.1 1.4 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|435852522|ref|YP_007314108.1| - 2.4e-09 37.8 0.0 3.1e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|435852522|ref|YP_007314108.1| - 0.00019 21.6 0.0 0.00049 20.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|435852522|ref|YP_007314108.1| - 0.013 15.2 0.6 0.29 10.8 0.1 2.2 1 1 0 2 2 2 0 Dephospho-CoA kinase Dus PF01207.17 gi|435852523|ref|YP_007314109.1| - 8.3e-79 264.9 0.0 9.9e-79 264.6 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) SOR_SNZ PF01680.17 gi|435852523|ref|YP_007314109.1| - 0.00027 20.8 1.3 0.061 13.1 0.1 2.3 1 1 1 2 2 2 2 SOR/SNZ family ThiG PF05690.14 gi|435852523|ref|YP_007314109.1| - 0.003 16.9 0.1 0.0063 15.8 0.1 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|435852523|ref|YP_007314109.1| - 0.0037 16.7 0.1 0.006 16.1 0.1 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein Oxidored_FMN PF00724.20 gi|435852523|ref|YP_007314109.1| - 0.014 14.7 0.0 0.021 14.1 0.0 1.3 1 0 0 1 1 1 0 NADH:flavin oxidoreductase / NADH oxidase family PEP_mutase PF13714.6 gi|435852523|ref|YP_007314109.1| - 0.033 13.6 0.3 0.097 12.1 0.3 1.8 1 1 0 1 1 1 0 Phosphoenolpyruvate phosphomutase NMO PF03060.15 gi|435852523|ref|YP_007314109.1| - 0.047 13.1 0.3 0.06 12.7 0.3 1.4 1 1 0 1 1 1 0 Nitronate monooxygenase POR PF01558.18 gi|435852524|ref|YP_007314110.1| - 1.3e-43 149.1 0.2 1.5e-43 148.9 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|435852525|ref|YP_007314111.1| - 4.3e-13 48.5 15.4 2.9e-07 30.0 2.3 2.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|435852525|ref|YP_007314111.1| - 1.8e-10 40.4 11.2 4.4e-05 23.4 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|435852525|ref|YP_007314111.1| - 5.3e-10 39.3 6.2 7.4e-10 38.8 6.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|435852525|ref|YP_007314111.1| - 1.4e-09 38.4 19.6 4.8e-07 30.3 10.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435852525|ref|YP_007314111.1| - 2.9e-09 36.5 9.4 0.00024 21.0 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|435852525|ref|YP_007314111.1| - 2.6e-08 33.9 8.3 4.1e-08 33.3 8.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435852525|ref|YP_007314111.1| - 1.4e-06 29.1 8.1 0.0035 18.2 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|435852525|ref|YP_007314111.1| - 1.4e-06 28.3 22.7 6.3e-05 23.0 12.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|435852525|ref|YP_007314111.1| - 9.3e-06 25.8 13.2 0.0063 16.9 0.9 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|435852525|ref|YP_007314111.1| - 1e-05 26.2 7.1 0.0082 16.9 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|435852525|ref|YP_007314111.1| - 5.7e-05 23.6 8.5 0.044 14.3 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|435852525|ref|YP_007314111.1| - 0.0003 21.3 10.9 0.01 16.3 1.2 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|435852525|ref|YP_007314111.1| - 0.0018 18.7 13.0 0.12 12.9 2.9 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|435852525|ref|YP_007314111.1| - 0.03 15.2 11.4 0.11 13.3 1.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|435852525|ref|YP_007314111.1| - 0.62 11.1 16.5 2.4 9.3 3.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.19 gi|435852526|ref|YP_007314112.1| - 1.9e-69 234.0 0.1 2.5e-69 233.5 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|435852526|ref|YP_007314112.1| - 1.8e-32 111.6 0.1 3.9e-32 110.6 0.1 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|435852526|ref|YP_007314112.1| - 9.2e-09 35.2 0.0 2e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TetR_C_31 PF17940.1 gi|435852526|ref|YP_007314112.1| - 0.083 13.1 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TPP_enzyme_C PF02775.21 gi|435852527|ref|YP_007314113.1| - 5.6e-27 94.4 0.2 7.7e-27 94.0 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HhH-GPD PF00730.25 gi|435852528|ref|YP_007314114.1| - 1.8e-23 83.1 0.0 2.3e-23 82.7 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|435852528|ref|YP_007314114.1| - 5.6e-10 38.6 0.1 2.3e-09 36.6 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|435852528|ref|YP_007314114.1| - 2.4e-05 24.8 0.0 0.0063 17.1 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.9 gi|435852528|ref|YP_007314114.1| - 8.7e-05 22.7 2.9 0.00014 22.1 2.9 1.3 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III 5_3_exonuc PF01367.20 gi|435852528|ref|YP_007314114.1| - 0.0016 19.0 0.1 0.0054 17.3 0.0 1.8 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold DUF3349 PF11829.8 gi|435852528|ref|YP_007314114.1| - 0.014 16.1 0.0 0.077 13.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3349) Sulfate_transp PF00916.20 gi|435852529|ref|YP_007314115.1| - 3.9e-87 292.5 36.9 6.1e-87 291.8 36.9 1.3 1 0 0 1 1 1 1 Sulfate permease family STAS PF01740.21 gi|435852529|ref|YP_007314115.1| - 1.8e-13 50.1 0.0 3.7e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 STAS domain MFS_MOT1 PF16983.5 gi|435852529|ref|YP_007314115.1| - 7.8e-07 29.5 6.7 7.8e-07 29.5 6.7 4.0 3 1 1 4 4 4 2 Molybdate transporter of MFS superfamily Aldo_ket_red PF00248.21 gi|435852530|ref|YP_007314116.1| - 2e-35 122.4 0.1 2.1e-33 115.8 0.0 2.3 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|435852530|ref|YP_007314116.1| - 5e-11 43.0 9.7 9.7e-11 42.0 9.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435852530|ref|YP_007314116.1| - 1.2e-08 35.0 8.4 2.3e-08 34.1 8.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|435852530|ref|YP_007314116.1| - 9.3e-05 22.8 7.8 0.00018 21.9 7.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435852530|ref|YP_007314116.1| - 0.00024 21.2 9.0 0.078 13.1 1.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|435852530|ref|YP_007314116.1| - 0.0006 19.6 4.2 0.0012 18.5 0.1 2.2 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.6 gi|435852530|ref|YP_007314116.1| - 0.0021 18.9 4.3 0.062 14.2 0.5 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|435852530|ref|YP_007314116.1| - 0.0029 17.8 8.4 0.11 12.7 1.4 2.5 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|435852530|ref|YP_007314116.1| - 0.0085 15.9 8.9 0.035 13.9 1.2 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.7 gi|435852530|ref|YP_007314116.1| - 0.012 16.1 1.7 0.012 16.1 1.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435852530|ref|YP_007314116.1| - 0.012 15.7 1.9 0.012 15.7 1.9 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain DHDPS PF00701.22 gi|435852530|ref|YP_007314116.1| - 0.023 13.4 0.1 0.049 12.3 0.0 1.5 2 0 0 2 2 2 0 Dihydrodipicolinate synthetase family Fer4_22 PF17179.4 gi|435852530|ref|YP_007314116.1| - 0.034 15.0 1.2 2.6 8.9 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|435852530|ref|YP_007314116.1| - 0.056 13.6 12.5 0.33 11.1 2.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|435852530|ref|YP_007314116.1| - 0.15 12.6 0.5 0.15 12.6 0.5 2.6 2 1 0 2 2 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_7 PF12838.7 gi|435852530|ref|YP_007314116.1| - 1.2 9.7 16.1 0.3 11.7 3.5 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435852530|ref|YP_007314116.1| - 3.4 7.9 15.5 0.069 13.2 1.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Disaggr_repeat PF06848.11 gi|435852531|ref|YP_007314117.1| - 2e-186 614.1 22.3 4e-93 310.1 7.4 2.8 2 0 0 2 2 2 2 Disaggregatase related repeat Disaggr_assoc PF08480.10 gi|435852531|ref|YP_007314117.1| - 9.9e-42 143.0 20.7 1.9e-41 142.0 18.4 2.8 2 0 0 2 2 2 1 Disaggregatase related PKD PF00801.20 gi|435852531|ref|YP_007314117.1| - 5.7e-19 67.7 16.1 5.7e-09 35.7 2.1 4.3 3 0 0 3 3 3 2 PKD domain Beta_helix PF13229.6 gi|435852531|ref|YP_007314117.1| - 6.6e-12 45.5 50.3 8.8e-08 32.2 17.9 3.2 1 1 1 2 2 2 2 Right handed beta helix region TGFb_propeptide PF00688.18 gi|435852531|ref|YP_007314117.1| - 7.8e-10 38.9 0.0 1.4 8.6 0.0 4.7 5 0 0 5 5 5 4 TGF-beta propeptide Y_Y_Y PF07495.13 gi|435852531|ref|YP_007314117.1| - 1.4e-05 25.0 1.2 0.094 12.7 0.1 3.1 2 0 0 2 2 2 2 Y_Y_Y domain Ub-RnfH PF03658.14 gi|435852531|ref|YP_007314117.1| - 0.00079 19.8 0.1 1.2 9.6 0.0 2.7 2 0 0 2 2 2 2 RnfH family Ubiquitin He_PIG PF05345.12 gi|435852531|ref|YP_007314117.1| - 0.00093 19.3 8.1 0.44 10.8 1.1 4.0 2 0 0 2 2 2 2 Putative Ig domain DUF4625 PF15418.6 gi|435852531|ref|YP_007314117.1| - 0.0093 16.2 11.6 0.53 10.5 0.2 4.7 4 2 1 5 5 5 2 Domain of unknown function (DUF4625) Hemopexin PF00045.19 gi|435852531|ref|YP_007314117.1| - 0.31 11.0 1.2 22 5.1 0.1 2.7 2 0 0 2 2 2 0 Hemopexin DUF5011 PF16403.5 gi|435852531|ref|YP_007314117.1| - 0.99 9.6 14.4 2.9 8.1 1.8 3.9 3 0 0 3 3 3 0 Domain of unknown function (DUF5011) Hexapep PF00132.24 gi|435852532|ref|YP_007314118.1| - 1.2e-07 31.1 10.2 0.0057 16.3 4.7 3.3 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|435852532|ref|YP_007314118.1| - 0.00053 19.7 15.4 0.14 12.0 5.3 3.7 2 2 1 3 3 3 3 Hexapeptide repeat of succinyl-transferase DUF362 PF04015.12 gi|435852533|ref|YP_007314119.1| - 6.1e-54 183.4 0.2 9.3e-54 182.7 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|435852533|ref|YP_007314119.1| - 4.5e-08 32.6 13.8 0.00057 19.6 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|435852533|ref|YP_007314119.1| - 1.2e-05 25.1 13.2 0.018 15.1 2.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|435852533|ref|YP_007314119.1| - 0.00019 21.9 13.5 0.00053 20.5 13.5 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|435852533|ref|YP_007314119.1| - 0.00028 21.0 14.7 0.00051 20.2 14.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|435852533|ref|YP_007314119.1| - 0.00053 20.1 14.5 0.0013 18.9 14.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|435852533|ref|YP_007314119.1| - 0.00077 19.4 14.3 0.0013 18.7 2.4 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|435852533|ref|YP_007314119.1| - 0.0033 17.5 15.5 0.017 15.3 16.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|435852533|ref|YP_007314119.1| - 0.0045 17.5 8.8 0.13 12.8 3.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|435852533|ref|YP_007314119.1| - 0.022 15.7 14.6 0.11 13.5 1.4 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Lar_N PF09861.9 gi|435852533|ref|YP_007314119.1| - 0.14 11.3 0.0 0.26 10.4 0.0 1.4 1 0 0 1 1 1 0 Lactate racemase N-terminal domain Fer4_4 PF12800.7 gi|435852533|ref|YP_007314119.1| - 0.75 10.5 16.0 5.6 7.7 2.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|435852533|ref|YP_007314119.1| - 0.94 10.6 19.8 5.4 8.2 4.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|435852533|ref|YP_007314119.1| - 4.4 7.8 18.0 12 6.5 7.0 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain adh_short_C2 PF13561.6 gi|435852534|ref|YP_007314120.1| - 6.8e-70 235.3 1.1 7.7e-70 235.1 1.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|435852534|ref|YP_007314120.1| - 1.8e-62 210.3 0.9 2.1e-62 210.0 0.9 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|435852534|ref|YP_007314120.1| - 7.3e-17 61.8 1.5 9.7e-17 61.4 1.5 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|435852534|ref|YP_007314120.1| - 0.00095 18.7 0.8 0.0026 17.3 0.8 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|435852534|ref|YP_007314120.1| - 0.012 15.0 0.4 0.029 13.7 0.2 1.8 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_10 PF13460.6 gi|435852534|ref|YP_007314120.1| - 0.026 14.4 0.1 0.036 14.0 0.1 1.2 1 0 0 1 1 1 0 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|435852534|ref|YP_007314120.1| - 0.036 13.2 0.1 0.054 12.6 0.1 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein NAD_synthase PF02540.17 gi|435852535|ref|YP_007314121.1| - 5.6e-54 182.8 0.4 6.9e-34 117.0 0.1 2.0 2 0 0 2 2 2 2 NAD synthase QueC PF06508.13 gi|435852535|ref|YP_007314121.1| - 0.0045 16.5 0.0 0.17 11.3 0.0 2.4 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|435852535|ref|YP_007314121.1| - 0.014 14.2 0.0 0.049 12.4 0.0 1.8 2 0 0 2 2 2 0 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|435852535|ref|YP_007314121.1| - 0.11 12.3 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 PP-loop family NAD_synthase PF02540.17 gi|435852536|ref|YP_007314122.1| - 0.0014 17.8 0.0 0.0023 17.1 0.0 1.3 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|435852536|ref|YP_007314122.1| - 0.0024 16.7 0.1 0.05 12.4 0.0 2.1 1 1 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|435852536|ref|YP_007314122.1| - 0.003 17.1 0.0 0.007 15.9 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|435852536|ref|YP_007314122.1| - 0.0038 16.9 0.0 0.0056 16.4 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase DUF5513 PF17632.2 gi|435852536|ref|YP_007314122.1| - 0.05 14.0 0.1 0.16 12.4 0.1 1.8 1 0 0 1 1 1 0 Family of unknown function (DUF5513) ATP_bind_3 PF01171.20 gi|435852536|ref|YP_007314122.1| - 0.11 12.3 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 PP-loop family Diphthami_syn_2 PF01902.17 gi|435852536|ref|YP_007314122.1| - 0.11 12.0 0.3 0.43 10.0 0.0 2.3 3 1 0 3 3 3 0 Diphthamide synthase AMP-binding PF00501.28 gi|435852537|ref|YP_007314123.1| - 4.6e-72 242.9 0.0 5.6e-72 242.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|435852537|ref|YP_007314123.1| - 3.3e-12 47.2 0.0 8.3e-12 45.9 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PP-binding PF00550.25 gi|435852538|ref|YP_007314124.1| - 5.3e-06 26.7 0.2 6.7e-06 26.4 0.2 1.2 1 0 0 1 1 1 1 Phosphopantetheine attachment site YjcQ PF09639.10 gi|435852538|ref|YP_007314124.1| - 0.049 13.9 0.3 0.11 12.8 0.1 1.7 2 0 0 2 2 2 0 YjcQ protein Acetyltransf_1 PF00583.25 gi|435852539|ref|YP_007314125.1| - 9.9e-16 58.0 0.1 6.7e-15 55.4 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|435852539|ref|YP_007314125.1| - 1.4e-08 34.8 0.0 2.7e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|435852539|ref|YP_007314125.1| - 1.5e-08 34.9 0.1 5.6e-08 33.1 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|435852539|ref|YP_007314125.1| - 1.1e-06 28.8 0.0 0.00084 19.4 0.0 2.7 2 1 0 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|435852539|ref|YP_007314125.1| - 2.1e-06 27.6 0.0 3.9e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|435852539|ref|YP_007314125.1| - 0.00038 21.2 0.0 0.00097 19.8 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|435852539|ref|YP_007314125.1| - 0.00092 19.3 0.0 0.0019 18.3 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase IMS PF00817.20 gi|435852540|ref|YP_007314126.1| - 1.2e-39 135.7 0.1 2e-39 135.0 0.1 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 gi|435852540|ref|YP_007314126.1| - 2.2e-12 47.7 0.1 4e-12 46.9 0.1 1.4 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|435852540|ref|YP_007314126.1| - 7.2e-10 38.6 0.0 1.7e-09 37.5 0.0 1.7 1 0 0 1 1 1 1 IMS family HHH motif Cdd1 PF11731.8 gi|435852540|ref|YP_007314126.1| - 0.076 13.3 0.0 0.25 11.6 0.0 1.8 2 0 0 2 2 2 0 Pathogenicity locus FTR_C PF02741.15 gi|435852542|ref|YP_007314128.1| - 7.8e-67 223.9 1.8 1.3e-66 223.2 1.8 1.4 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.18 gi|435852542|ref|YP_007314128.1| - 4.6e-64 214.6 0.4 1.1e-63 213.5 0.1 1.7 2 0 0 2 2 2 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase TraB PF01963.17 gi|435852543|ref|YP_007314129.1| - 5.1e-34 118.4 0.0 9.1e-34 117.5 0.0 1.3 1 0 0 1 1 1 1 TraB family TOBE PF03459.17 gi|435852543|ref|YP_007314129.1| - 0.018 15.3 0.4 1.2 9.5 0.0 2.8 3 0 0 3 3 3 0 TOBE domain Nit_Regul_Hom PF10126.9 gi|435852543|ref|YP_007314129.1| - 0.053 13.5 0.8 0.14 12.2 0.0 2.0 3 0 0 3 3 3 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII EMP70 PF02990.16 gi|435852543|ref|YP_007314129.1| - 2.1 6.9 4.4 2.6 6.6 1.7 2.1 2 1 1 3 3 3 0 Endomembrane protein 70 CBS PF00571.28 gi|435852544|ref|YP_007314130.1| - 1.5e-26 92.6 4.3 2.5e-15 56.7 0.6 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|435852544|ref|YP_007314130.1| - 1.9e-14 53.6 13.6 7.2e-08 32.0 0.9 3.6 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|435852544|ref|YP_007314130.1| - 0.00021 21.0 6.6 0.00021 21.0 6.6 1.9 1 1 0 1 1 1 1 Peptidase M50B-like Alfin PF12165.8 gi|435852544|ref|YP_007314130.1| - 0.12 12.0 0.1 0.21 11.3 0.1 1.3 1 0 0 1 1 1 0 Alfin Pyridoxal_deC PF00282.19 gi|435852545|ref|YP_007314131.1| - 3e-31 108.5 0.0 9e-31 106.9 0.0 1.6 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|435852545|ref|YP_007314131.1| - 1.9e-08 33.7 0.0 4.8e-08 32.4 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|435852545|ref|YP_007314131.1| - 0.025 13.9 0.0 0.039 13.2 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanomethylovorans_hollandica_DSM_15978_uid184864/NC_019977.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanomethylovorans_hollandica_DSM_15978_uid184864/NC_019977.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanomethylovorans_hollandica_DSM_15978_uid184864/NC_019977.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanomethylovorans_hollandica_DSM_15978_uid184864/NC_019977.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:04:16 2019 # [ok]