# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|435849689|ref|YP_007301630.1| - 5.9e-17 61.1 0.0 1.4e-16 59.9 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|435849689|ref|YP_007301630.1| - 4e-09 36.6 0.0 8.6e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|435849689|ref|YP_007301630.1| - 1.4e-07 31.4 1.1 2e-07 30.9 0.2 1.6 2 0 0 2 2 2 1 Archaeal ATPase AAA PF00004.24 gi|435849689|ref|YP_007301630.1| - 1.9e-07 31.3 0.2 4.4e-07 30.1 0.1 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|435849689|ref|YP_007301630.1| - 1.4e-05 24.8 0.0 4.4e-05 23.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|435849689|ref|YP_007301630.1| - 3e-05 23.7 0.0 5e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_16 PF13191.1 gi|435849689|ref|YP_007301630.1| - 0.00047 20.1 0.0 0.0049 16.8 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain Pox_D5 PF03288.11 gi|435849689|ref|YP_007301630.1| - 0.00071 19.7 0.0 0.0024 18.0 0.0 1.9 2 0 0 2 2 1 1 Poxvirus D5 protein-like AAA_2 PF07724.9 gi|435849689|ref|YP_007301630.1| - 0.0012 18.8 0.5 0.0042 17.0 0.3 1.9 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) Mg_chelatase PF01078.16 gi|435849689|ref|YP_007301630.1| - 0.0037 16.4 0.0 0.0068 15.5 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Mg_chelatase_2 PF13335.1 gi|435849689|ref|YP_007301630.1| - 0.0073 16.6 0.2 0.014 15.7 0.1 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI T2SE PF00437.15 gi|435849689|ref|YP_007301630.1| - 0.0085 15.0 0.1 0.018 13.9 0.1 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.24 gi|435849689|ref|YP_007301630.1| - 0.0097 15.4 0.5 1.1 8.7 0.1 2.3 1 1 0 2 2 2 1 DEAD/DEAH box helicase DUF87 PF01935.12 gi|435849689|ref|YP_007301630.1| - 0.012 15.4 0.7 0.042 13.6 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF87 Sigma54_activat PF00158.21 gi|435849689|ref|YP_007301630.1| - 0.013 15.0 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|435849689|ref|YP_007301630.1| - 0.016 15.3 1.0 0.37 11.0 0.7 2.5 1 1 0 1 1 1 0 RNA helicase DUF2075 PF09848.4 gi|435849689|ref|YP_007301630.1| - 0.016 14.2 0.0 0.031 13.2 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_10 PF12846.2 gi|435849689|ref|YP_007301630.1| - 0.028 13.8 0.5 0.4 10.0 0.3 2.2 1 1 0 2 2 2 0 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|435849689|ref|YP_007301630.1| - 0.029 13.8 0.0 0.069 12.6 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family IstB_IS21 PF01695.12 gi|435849689|ref|YP_007301630.1| - 0.08 12.3 0.1 0.36 10.2 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein RFX_DNA_binding PF02257.10 gi|435849689|ref|YP_007301630.1| - 0.09 12.9 0.0 0.29 11.3 0.0 1.8 2 0 0 2 2 2 0 RFX DNA-binding domain DUF815 PF05673.8 gi|435849689|ref|YP_007301630.1| - 0.093 11.6 0.0 0.16 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) PhoH PF02562.11 gi|435849689|ref|YP_007301630.1| - 0.12 11.6 3.6 0.76 8.9 0.9 2.8 2 1 0 2 2 2 0 PhoH-like protein Torsin PF06309.6 gi|435849689|ref|YP_007301630.1| - 0.13 12.1 0.5 1.4 8.7 0.1 2.3 1 1 1 2 2 2 0 Torsin AAA_24 PF13479.1 gi|435849689|ref|YP_007301630.1| - 0.56 9.7 3.2 3.8 7.0 0.7 3.0 1 1 2 3 3 3 0 AAA domain DEAD PF00270.24 gi|435849690|ref|YP_007301631.1| - 8e-29 100.2 0.5 5.2e-28 97.6 0.0 2.6 3 1 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|435849690|ref|YP_007301631.1| - 4.4e-10 39.2 0.0 1.2e-09 37.8 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DSHCT PF08148.7 gi|435849690|ref|YP_007301631.1| - 0.024 13.9 0.2 0.19 10.9 0.0 2.5 2 0 0 2 2 2 0 DSHCT (NUC185) domain tRNA_anti-codon PF01336.20 gi|435849693|ref|YP_007301634.1| - 0.023 14.5 0.0 0.04 13.7 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain zf-C2H2_6 PF13912.1 gi|435849695|ref|YP_007301636.1| - 0.091 12.6 0.4 0.16 11.8 0.2 1.4 1 0 0 1 1 1 0 C2H2-type zinc finger DUF1273 PF06908.6 gi|435849697|ref|YP_007301638.1| - 2.5e-20 72.8 0.0 3.3e-20 72.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1273) DNA_processg_A PF02481.10 gi|435849697|ref|YP_007301638.1| - 3.1e-08 32.7 0.0 3.5e-08 32.6 0.0 1.0 1 0 0 1 1 1 1 DNA recombination-mediator protein A Nuc_deoxyrib_tr PF05014.10 gi|435849697|ref|YP_007301638.1| - 0.026 14.3 0.1 0.048 13.5 0.0 1.6 1 1 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase MoCo_carrier PF12694.2 gi|435849697|ref|YP_007301638.1| - 0.1 12.0 0.0 0.19 11.1 0.0 1.7 1 1 0 1 1 1 0 Putative molybdenum carrier RNase_HII PF01351.13 gi|435849698|ref|YP_007301639.1| - 8.2e-25 87.6 0.2 9.2e-24 84.1 0.1 2.1 1 1 0 1 1 1 1 Ribonuclease HII PQ-loop PF04193.9 gi|435849699|ref|YP_007301640.1| - 0.16 11.5 0.9 0.3 10.6 0.6 1.5 1 1 0 1 1 1 0 PQ loop repeat DUF4313 PF14190.1 gi|435849700|ref|YP_007301641.1| - 0.00039 20.0 0.0 0.00051 19.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4313) OrfB_IS605 PF01385.14 gi|435849702|ref|YP_007301643.1| - 3.9e-24 85.2 7.2 1.1e-23 83.8 5.0 1.7 1 1 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|435849702|ref|YP_007301643.1| - 2.7e-21 74.9 2.5 6.1e-21 73.8 1.7 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|435849702|ref|YP_007301643.1| - 1.5e-07 30.5 0.0 3.9e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain C1_1 PF00130.17 gi|435849702|ref|YP_007301643.1| - 0.0064 16.2 1.0 0.014 15.0 0.7 1.6 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Band_3_cyto PF07565.8 gi|435849702|ref|YP_007301643.1| - 0.11 12.0 0.1 0.31 10.5 0.1 1.7 2 0 0 2 2 2 0 Band 3 cytoplasmic domain FYVE PF01363.16 gi|435849702|ref|YP_007301643.1| - 0.98 9.3 7.1 0.17 11.8 1.2 2.2 2 0 0 2 2 2 0 FYVE zinc finger OrfB_IS605 PF01385.14 gi|435849704|ref|YP_007301645.1| - 4.6e-24 85.0 8.8 9.2e-24 84.0 6.1 1.4 1 1 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|435849704|ref|YP_007301645.1| - 2.8e-21 74.9 1.0 5.3e-21 74.0 0.7 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|435849704|ref|YP_007301645.1| - 1.5e-09 37.0 0.0 1e-08 34.3 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.7 gi|435849704|ref|YP_007301645.1| - 0.67 9.3 4.5 1.4 8.3 3.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding End3 PF12761.2 gi|435849705|ref|YP_007301646.1| - 0.13 11.9 0.9 0.15 11.6 0.6 1.1 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 DUF1825 PF08855.5 gi|435849705|ref|YP_007301646.1| - 0.17 11.9 0.6 3.1 7.8 0.0 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF1825) DUF4375 PF14300.1 gi|435849705|ref|YP_007301646.1| - 2.4 8.1 4.6 7.3 6.6 3.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4375) NRDD PF13597.1 gi|435849708|ref|YP_007301649.1| - 5.1e-155 516.6 0.0 6.1e-155 516.3 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.11 gi|435849708|ref|YP_007301649.1| - 0.0018 18.6 0.1 0.0038 17.6 0.0 1.5 1 0 0 1 1 1 1 ATP cone domain MCM PF00493.18 gi|435849709|ref|YP_007301650.1| - 2e-124 414.7 0.1 2.9e-124 414.2 0.1 1.2 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|435849709|ref|YP_007301650.1| - 4e-11 43.4 0.1 2.3e-10 41.0 0.0 2.4 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|435849709|ref|YP_007301650.1| - 6.9e-08 31.8 0.1 4.3e-05 22.7 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|435849709|ref|YP_007301650.1| - 2.8e-06 27.0 0.0 3.9e-05 23.4 0.0 2.9 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|435849709|ref|YP_007301650.1| - 9.8e-05 21.9 0.0 0.00036 20.1 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|435849709|ref|YP_007301650.1| - 0.00043 19.7 0.0 0.0074 15.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_22 PF13401.1 gi|435849709|ref|YP_007301650.1| - 0.0097 16.0 0.5 0.38 10.8 0.0 3.0 2 1 0 2 2 2 1 AAA domain Lipocalin_5 PF13924.1 gi|435849709|ref|YP_007301650.1| - 0.12 12.1 0.0 0.38 10.4 0.0 1.8 2 0 0 2 2 2 0 Lipocalin-like domain Cdc6_C PF09079.6 gi|435849710|ref|YP_007301651.1| - 9.9e-12 44.4 0.1 2.9e-11 42.9 0.0 1.8 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|435849710|ref|YP_007301651.1| - 3.1e-07 30.6 0.2 1.3e-06 28.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|435849710|ref|YP_007301651.1| - 0.00019 21.5 0.0 0.00038 20.4 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain DUF815 PF05673.8 gi|435849710|ref|YP_007301651.1| - 0.00039 19.4 0.0 0.0044 15.9 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF815) RFX_DNA_binding PF02257.10 gi|435849710|ref|YP_007301651.1| - 0.0058 16.7 0.0 0.012 15.7 0.0 1.5 1 0 0 1 1 1 1 RFX DNA-binding domain NB-ARC PF00931.17 gi|435849710|ref|YP_007301651.1| - 0.0062 15.4 1.2 0.011 14.6 0.7 1.7 1 1 0 1 1 1 1 NB-ARC domain AAA PF00004.24 gi|435849710|ref|YP_007301651.1| - 0.063 13.4 0.3 0.21 11.7 0.0 2.2 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.18 gi|435849710|ref|YP_007301651.1| - 0.18 11.7 3.7 0.86 9.5 2.2 2.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase tRNA_lig_kinase PF08303.6 gi|435849710|ref|YP_007301651.1| - 0.28 11.0 6.2 0.19 11.6 0.8 2.9 1 1 2 3 3 3 0 tRNA ligase kinase domain CT47 PF15623.1 gi|435849711|ref|YP_007301652.1| - 0.0093 15.7 0.1 0.0095 15.7 0.0 1.0 1 0 0 1 1 1 1 Cancer/testis gene family 47 PilX_N PF14341.1 gi|435849712|ref|YP_007301653.1| - 2.6 7.7 7.5 7.4 6.3 5.2 1.7 1 1 0 1 1 1 0 PilX N-terminal Rnf-Nqr PF02508.9 gi|435849715|ref|YP_007301656.1| - 0.076 12.5 0.9 0.077 12.5 0.6 1.0 1 0 0 1 1 1 0 Rnf-Nqr subunit, membrane protein MinE PF03776.9 gi|435849721|ref|YP_007301662.1| - 0.047 13.1 0.3 0.15 11.6 0.0 1.9 2 0 0 2 2 2 0 Septum formation topological specificity factor MinE DUF98 PF01947.11 gi|435849723|ref|YP_007301664.1| - 0.092 12.4 0.1 1.2 8.8 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF98) VirB3 PF05101.8 gi|435849726|ref|YP_007301667.1| - 5.6 7.0 14.1 7 6.7 2.2 2.1 1 1 1 2 2 2 0 Type IV secretory pathway, VirB3-like protein IncA PF04156.9 gi|435849727|ref|YP_007301668.1| - 1.4 8.4 10.9 2.4 7.7 7.6 1.3 1 0 0 1 1 1 0 IncA protein Methyltransf_PK PF05891.7 gi|435849728|ref|YP_007301669.1| - 0.095 11.9 0.0 0.12 11.6 0.0 1.3 1 1 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Acetyltransf_7 PF13508.1 gi|435849729|ref|YP_007301670.1| - 0.00039 20.5 0.0 0.0007 19.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain TK PF00265.13 gi|435849729|ref|YP_007301670.1| - 0.03 13.8 0.3 0.042 13.4 0.2 1.2 1 0 0 1 1 1 0 Thymidine kinase Acetyltransf_1 PF00583.19 gi|435849729|ref|YP_007301670.1| - 0.053 13.5 0.0 0.094 12.7 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family DUF2812 PF11193.3 gi|435849729|ref|YP_007301670.1| - 0.067 13.3 0.2 0.11 12.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2812) Cag12 PF13117.1 gi|435849729|ref|YP_007301670.1| - 0.081 12.8 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Cag pathogenicity island protein Cag12 FR47 PF08445.5 gi|435849729|ref|YP_007301670.1| - 0.094 12.4 0.0 0.25 11.1 0.0 1.7 2 0 0 2 2 2 0 FR47-like protein MipZ PF09140.6 gi|435849731|ref|YP_007301672.1| - 7.9e-07 28.4 0.3 7.6e-06 25.1 0.1 2.2 2 1 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|435849731|ref|YP_007301672.1| - 1.5e-06 27.4 0.5 0.0071 15.4 0.1 2.5 2 0 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.18 gi|435849731|ref|YP_007301672.1| - 4.6e-06 26.1 6.0 0.00013 21.4 0.2 2.7 3 1 0 3 3 3 2 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|435849731|ref|YP_007301672.1| - 0.00028 20.1 3.2 0.07 12.3 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|435849731|ref|YP_007301672.1| - 0.0011 18.9 0.3 0.0057 16.6 0.0 2.3 3 0 0 3 3 3 1 AAA domain APS_kinase PF01583.15 gi|435849731|ref|YP_007301672.1| - 0.061 12.9 0.0 0.24 11.0 0.0 1.9 2 0 0 2 2 2 0 Adenylylsulphate kinase FeoA PF04023.9 gi|435849732|ref|YP_007301673.1| - 0.13 12.2 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 FeoA domain PRRSV_2b PF07069.6 gi|435849734|ref|YP_007301675.1| - 0.068 13.4 1.4 0.11 12.8 0.9 1.3 1 0 0 1 1 1 0 Porcine reproductive and respiratory syndrome virus 2b Topoisom_bac PF01131.15 gi|435849735|ref|YP_007301676.1| - 2.3e-35 122.2 0.0 3.8e-35 121.4 0.0 1.3 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|435849735|ref|YP_007301676.1| - 8.7e-09 34.7 2.1 3.4e-08 32.8 1.4 2.1 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|435849735|ref|YP_007301676.1| - 0.0038 17.1 0.1 0.041 13.8 0.0 2.7 3 0 0 3 3 3 1 Toprim domain CarboxypepD_reg PF13620.1 gi|435849736|ref|YP_007301677.1| - 3.7e-09 36.5 2.0 3.7e-09 36.5 1.4 2.7 3 1 0 3 3 3 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|435849736|ref|YP_007301677.1| - 0.00013 21.9 0.3 0.00013 21.9 0.2 3.3 3 1 0 3 3 3 1 Domain of unknown function (DUF4480) DNA_primase_S PF01896.14 gi|435849738|ref|YP_007301679.1| - 2.3e-05 24.2 0.3 0.0049 16.6 0.0 2.6 2 2 0 2 2 2 1 Eukaryotic and archaeal DNA primase small subunit Endonuc-BsobI PF09194.5 gi|435849739|ref|YP_007301680.1| - 0.058 12.3 0.0 0.094 11.6 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease BsobI TraS PF10624.4 gi|435849739|ref|YP_007301680.1| - 0.13 11.8 2.4 0.45 10.0 1.7 1.9 1 0 0 1 1 1 0 Plasmid conjugative transfer entry exclusion protein TraS Neurensin PF14927.1 gi|435849739|ref|YP_007301680.1| - 7.9 5.8 7.1 0.51 9.7 0.1 2.5 3 0 0 3 3 3 0 Neurensin DUF500 PF04366.7 gi|435849740|ref|YP_007301681.1| - 0.11 11.9 0.0 0.11 11.9 0.0 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF500) AAA_10 PF12846.2 gi|435849741|ref|YP_007301682.1| - 2.4e-23 83.0 0.0 4.1e-23 82.2 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|435849741|ref|YP_007301682.1| - 3.6e-07 30.2 0.8 3.8e-06 26.8 0.0 3.0 3 1 0 3 3 3 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|435849741|ref|YP_007301682.1| - 1.1e-05 24.0 0.0 1.7e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|435849741|ref|YP_007301682.1| - 0.0007 18.3 0.0 0.0013 17.4 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain DEAD PF00270.24 gi|435849741|ref|YP_007301682.1| - 0.00092 18.7 0.0 0.003 17.0 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|435849741|ref|YP_007301682.1| - 0.0021 17.8 1.6 0.0038 17.0 0.1 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.13 gi|435849741|ref|YP_007301682.1| - 0.0053 16.2 0.1 0.015 14.8 0.0 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family T2SE PF00437.15 gi|435849741|ref|YP_007301682.1| - 0.012 14.5 0.9 0.038 12.8 0.1 2.3 2 1 0 2 2 2 0 Type II/IV secretion system protein DUF4658 PF15555.1 gi|435849742|ref|YP_007301683.1| - 0.062 13.1 0.1 0.098 12.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4658) Myc_target_1 PF15179.1 gi|435849742|ref|YP_007301683.1| - 0.066 12.7 0.1 0.16 11.5 0.1 1.6 1 0 0 1 1 1 0 Myc target protein 1 DUF1282 PF06930.7 gi|435849747|ref|YP_007301688.1| - 0.035 13.7 0.9 0.11 12.1 0.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1282) DUF3575 PF12099.3 gi|435849749|ref|YP_007301690.1| - 0.12 11.4 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3575) T2SE PF00437.15 gi|435849750|ref|YP_007301691.1| - 3.6e-16 58.8 0.1 8.2e-16 57.7 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein DUF2265 PF10023.4 gi|435849751|ref|YP_007301692.1| - 0.045 12.8 0.1 0.057 12.5 0.1 1.2 1 0 0 1 1 1 0 Predicted aminopeptidase (DUF2265) Y1_Tnp PF01797.11 gi|435849752|ref|YP_007301693.1| - 2.8e-24 85.2 0.9 3e-24 85.1 0.6 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_IS605 PF01385.14 gi|435849753|ref|YP_007301694.1| - 7.6e-46 156.3 2.5 1.3e-45 155.5 1.8 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|435849753|ref|YP_007301694.1| - 4.2e-24 83.9 0.1 9.4e-24 82.8 0.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|435849753|ref|YP_007301694.1| - 1.8e-22 78.3 0.2 3.5e-22 77.4 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain A2L_zn_ribbon PF08792.5 gi|435849753|ref|YP_007301694.1| - 0.0043 16.4 1.4 0.0088 15.4 0.9 1.5 1 0 0 1 1 1 1 A2L zinc ribbon domain Prok-RING_1 PF14446.1 gi|435849753|ref|YP_007301694.1| - 0.04 13.6 1.0 0.078 12.7 0.7 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 HypA PF01155.14 gi|435849753|ref|YP_007301694.1| - 0.045 13.4 0.0 0.092 12.4 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-RanBP PF00641.13 gi|435849753|ref|YP_007301694.1| - 0.059 12.4 6.3 0.94 8.6 1.2 2.6 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others DZR PF12773.2 gi|435849753|ref|YP_007301694.1| - 0.092 12.5 0.7 0.18 11.6 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon Rubredoxin PF00301.15 gi|435849753|ref|YP_007301694.1| - 1.6 8.6 5.2 17 5.3 3.6 2.4 1 1 0 1 1 1 0 Rubredoxin HTH_34 PF13601.1 gi|435849755|ref|YP_007301696.1| - 7.6e-06 25.8 3.6 0.00018 21.4 0.3 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|435849755|ref|YP_007301696.1| - 8.8e-06 25.4 6.4 0.00038 20.2 0.7 2.1 2 0 0 2 2 2 2 Winged helix-turn-helix HTH_24 PF13412.1 gi|435849755|ref|YP_007301696.1| - 7.1e-05 22.1 0.6 0.025 13.9 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|435849755|ref|YP_007301696.1| - 7.1e-05 23.0 0.2 0.00016 21.9 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|435849755|ref|YP_007301696.1| - 0.00015 21.4 2.2 0.00023 20.8 1.5 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_5 PF01022.15 gi|435849755|ref|YP_007301696.1| - 0.00068 19.2 0.6 0.073 12.7 0.1 2.4 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|435849755|ref|YP_007301696.1| - 0.00078 19.0 0.1 0.018 14.7 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.12 gi|435849755|ref|YP_007301696.1| - 0.003 17.1 0.5 0.15 11.7 0.0 2.1 2 0 0 2 2 2 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|435849755|ref|YP_007301696.1| - 0.0058 16.3 0.0 0.014 15.1 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|435849755|ref|YP_007301696.1| - 0.0086 15.8 0.1 0.75 9.6 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain Mrr_N PF14338.1 gi|435849755|ref|YP_007301696.1| - 0.011 15.7 0.3 0.032 14.3 0.0 1.9 2 1 1 3 3 2 0 Mrr N-terminal domain HTH_Crp_2 PF13545.1 gi|435849755|ref|YP_007301696.1| - 0.016 14.9 0.1 0.08 12.7 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF2513 PF10711.4 gi|435849755|ref|YP_007301696.1| - 0.026 14.6 0.7 0.055 13.5 0.1 1.8 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) DUF2250 PF10007.4 gi|435849755|ref|YP_007301696.1| - 0.028 14.3 0.9 0.63 9.9 0.2 2.6 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) COP-gamma_platf PF08752.5 gi|435849755|ref|YP_007301696.1| - 0.038 13.8 3.2 0.74 9.6 0.0 2.5 1 1 2 3 3 3 0 Coatomer gamma subunit appendage platform subdomain IF2_N PF04760.10 gi|435849755|ref|YP_007301696.1| - 0.042 13.4 3.5 0.53 9.9 0.1 2.8 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region MarR PF01047.17 gi|435849755|ref|YP_007301696.1| - 0.059 13.0 0.2 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 MarR family Fe-S_assembly PF04384.8 gi|435849756|ref|YP_007301697.1| - 0.061 13.6 0.5 3.9 7.9 0.1 2.9 2 1 1 3 3 3 0 Iron-sulphur cluster assembly AAA_13 PF13166.1 gi|435849757|ref|YP_007301698.1| - 3e-07 29.3 57.7 0.0011 17.6 13.7 2.3 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|435849757|ref|YP_007301698.1| - 5.9e-06 26.7 32.0 5.9e-06 26.7 22.2 4.4 1 1 2 3 3 2 1 AAA domain Reo_sigmaC PF04582.7 gi|435849757|ref|YP_007301698.1| - 0.00012 21.4 19.9 0.0077 15.4 3.7 2.6 2 1 0 2 2 2 2 Reovirus sigma C capsid protein zf-CpG_bind_C PF12269.3 gi|435849757|ref|YP_007301698.1| - 0.00057 19.4 6.2 0.00057 19.4 4.3 3.1 2 1 1 4 4 4 1 CpG binding protein zinc finger C terminal domain Sec8_exocyst PF04048.9 gi|435849757|ref|YP_007301698.1| - 0.0038 16.8 0.2 0.0038 16.8 0.2 5.2 2 2 2 5 5 5 1 Sec8 exocyst complex component specific domain Spc7 PF08317.6 gi|435849757|ref|YP_007301698.1| - 0.034 12.8 62.0 0.05 12.2 20.2 3.8 2 2 0 2 2 2 0 Spc7 kinetochore protein TMF_TATA_bd PF12325.3 gi|435849757|ref|YP_007301698.1| - 0.057 13.1 43.0 0.84 9.3 5.4 5.6 2 2 3 5 5 5 0 TATA element modulatory factor 1 TATA binding Atg14 PF10186.4 gi|435849757|ref|YP_007301698.1| - 0.065 12.1 50.3 0.92 8.3 14.8 4.4 2 2 2 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 Zn-ribbon_8 PF09723.5 gi|435849757|ref|YP_007301698.1| - 0.086 12.8 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Rad50_zn_hook PF04423.9 gi|435849757|ref|YP_007301698.1| - 0.2 11.1 0.0 0.2 11.1 0.0 5.9 5 2 1 6 6 6 0 Rad50 zinc hook motif Mnd1 PF03962.10 gi|435849757|ref|YP_007301698.1| - 0.61 9.7 47.8 0.09 12.4 6.8 4.8 1 1 3 4 4 4 0 Mnd1 family HALZ PF02183.13 gi|435849757|ref|YP_007301698.1| - 0.93 9.2 14.7 2.8 7.7 0.0 5.1 4 1 1 5 5 5 0 Homeobox associated leucine zipper Myosin_tail_1 PF01576.14 gi|435849757|ref|YP_007301698.1| - 1.2 6.7 50.2 0.058 11.1 9.0 3.2 2 1 1 3 3 3 0 Myosin tail Baculo_PEP_C PF04513.7 gi|435849757|ref|YP_007301698.1| - 5.5 6.8 34.6 0.64 9.8 5.1 4.5 2 2 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4055 PF13264.1 gi|435849757|ref|YP_007301698.1| - 7 6.7 13.4 11 6.1 1.3 4.1 4 0 0 4 4 4 0 Domain of unknown function (DUF4055) IncA PF04156.9 gi|435849757|ref|YP_007301698.1| - 7.4 6.1 43.5 33 3.9 16.2 3.9 1 1 2 3 3 3 0 IncA protein Glutaredoxin PF00462.19 gi|435849758|ref|YP_007301699.1| - 7.3e-07 29.0 0.1 0.0013 18.6 0.0 3.0 2 1 0 2 2 2 2 Glutaredoxin Thioredoxin PF00085.15 gi|435849758|ref|YP_007301699.1| - 0.00059 19.4 0.1 1.1 8.9 0.0 2.5 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.1 gi|435849758|ref|YP_007301699.1| - 0.001 19.2 0.4 3 8.0 0.0 3.0 2 1 0 2 2 2 2 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|435849758|ref|YP_007301699.1| - 0.12 12.5 2.3 11 6.2 0.1 3.3 3 1 0 3 3 3 0 Thioredoxin-like Peptidase_M50 PF02163.17 gi|435849759|ref|YP_007301700.1| - 2.1e-26 92.0 0.0 8.7e-26 90.0 0.0 2.0 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|435849759|ref|YP_007301700.1| - 1.2e-19 70.0 2.7 1.7e-10 40.6 0.6 2.3 2 0 0 2 2 2 2 PDZ domain PDZ PF00595.19 gi|435849759|ref|YP_007301700.1| - 0.0001 22.4 4.8 0.023 14.8 1.3 2.6 1 1 1 2 2 2 2 PDZ domain (Also known as DHR or GLGF) PDZ_1 PF12812.2 gi|435849759|ref|YP_007301700.1| - 0.0057 16.5 0.5 2.1 8.2 0.0 2.5 2 0 0 2 2 2 2 PDZ-like domain DUF1699 PF08004.6 gi|435849760|ref|YP_007301701.1| - 6.4e-58 193.9 0.2 7.2e-58 193.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) HTH_7 PF02796.10 gi|435849760|ref|YP_007301701.1| - 0.018 14.8 0.0 0.041 13.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase OrfB_IS605 PF01385.14 gi|435849761|ref|YP_007301702.1| - 2.9e-38 131.5 7.5 6e-37 127.2 5.2 2.1 1 1 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|435849761|ref|YP_007301702.1| - 3.2e-21 74.7 0.4 6.5e-21 73.7 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|435849761|ref|YP_007301702.1| - 1.6e-13 49.7 0.1 3.8e-13 48.5 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain zf-piccolo PF05715.8 gi|435849761|ref|YP_007301702.1| - 0.025 14.5 0.3 0.059 13.3 0.2 1.5 1 0 0 1 1 1 0 Piccolo Zn-finger Rubredoxin PF00301.15 gi|435849761|ref|YP_007301702.1| - 6.2 6.7 6.6 63 3.5 4.6 2.2 1 1 0 1 1 1 0 Rubredoxin DUF3006 PF11213.3 gi|435849762|ref|YP_007301703.1| - 9.7e-19 66.8 0.5 1.1e-18 66.7 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) HemN_C PF06969.11 gi|435849763|ref|YP_007301704.1| - 0.15 12.1 0.1 0.35 10.9 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain Myb_DNA-bind_4 PF13837.1 gi|435849764|ref|YP_007301705.1| - 0.0038 17.3 0.4 1.2 9.3 0.0 3.0 2 0 0 2 2 2 2 Myb/SANT-like DNA-binding domain PAP_fibrillin PF04755.7 gi|435849764|ref|YP_007301705.1| - 0.032 13.9 3.6 0.37 10.4 0.3 2.5 2 1 0 2 2 2 0 PAP_fibrillin HHH_6 PF14579.1 gi|435849764|ref|YP_007301705.1| - 0.11 12.6 0.6 0.82 9.7 0.0 2.7 3 0 0 3 3 3 0 Helix-hairpin-helix motif DUF1700 PF08006.6 gi|435849765|ref|YP_007301706.1| - 0.2 10.9 2.1 0.25 10.6 1.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) ABC_tran PF00005.22 gi|435849767|ref|YP_007301708.1| - 5.1e-27 94.8 0.0 1.2e-26 93.6 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|435849767|ref|YP_007301708.1| - 3.3e-17 63.3 0.0 3.8e-15 56.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|435849767|ref|YP_007301708.1| - 0.00051 20.4 0.1 0.00082 19.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|435849767|ref|YP_007301708.1| - 0.0018 18.4 1.4 0.019 15.1 0.4 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|435849767|ref|YP_007301708.1| - 0.0043 16.5 0.3 0.013 15.0 0.2 1.8 1 1 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|435849767|ref|YP_007301708.1| - 0.0067 15.9 0.2 0.084 12.2 0.1 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_15 PF13175.1 gi|435849767|ref|YP_007301708.1| - 0.026 13.5 0.0 0.17 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|435849767|ref|YP_007301708.1| - 0.029 14.0 0.2 0.1 12.2 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|435849767|ref|YP_007301708.1| - 0.052 12.9 0.1 0.094 12.1 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|435849767|ref|YP_007301708.1| - 0.11 12.0 0.1 0.3 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|435849767|ref|YP_007301708.1| - 0.14 12.2 0.2 0.53 10.4 0.2 2.1 1 1 0 1 1 1 0 AAA domain NPCBM_assoc PF10633.4 gi|435849768|ref|YP_007301709.1| - 8.2e-12 45.0 0.6 0.0002 21.3 0.0 4.4 4 1 0 4 4 4 3 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|435849768|ref|YP_007301709.1| - 1.3e-06 28.3 8.7 0.021 14.8 0.1 3.4 3 0 0 3 3 3 2 Domain of unknown function DUF11 CARDB PF07705.6 gi|435849768|ref|YP_007301709.1| - 6.9e-05 22.8 0.5 6.9e-05 22.8 0.3 2.9 3 1 0 3 3 3 1 CARDB FixG_C PF11614.3 gi|435849768|ref|YP_007301709.1| - 0.00014 21.9 2.3 0.033 14.2 0.1 3.5 2 1 2 4 4 4 1 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF1034 PF06280.7 gi|435849768|ref|YP_007301709.1| - 0.0034 17.7 2.0 1.4 9.3 0.9 3.1 1 1 0 1 1 1 1 Fn3-like domain (DUF1034) AP3B1_C PF14796.1 gi|435849768|ref|YP_007301709.1| - 0.0049 16.5 0.0 0.014 15.0 0.0 1.7 2 0 0 2 2 2 1 Clathrin-adaptor complex-3 beta-1 subunit C-terminal A2M_N PF01835.14 gi|435849768|ref|YP_007301709.1| - 0.017 15.3 0.4 1.5 9.1 0.0 3.1 3 2 0 3 3 3 0 MG2 domain GH97_C PF14509.1 gi|435849768|ref|YP_007301709.1| - 0.074 13.1 0.1 0.27 11.3 0.1 1.9 1 0 0 1 1 1 0 Glycosyl-hydrolase 97 C-terminal, oligomerisation Transglut_C PF00927.17 gi|435849768|ref|YP_007301709.1| - 0.13 12.2 0.2 0.68 9.9 0.0 2.3 2 1 1 3 3 3 0 Transglutaminase family, C-terminal ig like domain DUF440 PF04269.7 gi|435849768|ref|YP_007301709.1| - 0.23 11.5 1.0 8.1 6.5 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function, DUF440 DUF3871 PF12987.2 gi|435849769|ref|YP_007301710.1| - 0.11 11.2 0.1 0.17 10.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3871) Sigma_reg_N PF13800.1 gi|435849769|ref|YP_007301710.1| - 0.14 12.1 1.1 0.23 11.4 0.8 1.5 1 1 0 1 1 1 0 Sigma factor regulator N-terminal ABC2_membrane_2 PF12679.2 gi|435849770|ref|YP_007301711.1| - 8e-30 103.6 27.8 1e-29 103.2 19.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|435849770|ref|YP_007301711.1| - 5.8e-11 41.9 44.1 2.7e-10 39.8 30.3 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|435849770|ref|YP_007301711.1| - 5.3e-07 28.9 36.0 5.3e-07 28.9 25.0 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|435849770|ref|YP_007301711.1| - 0.69 9.1 42.2 0.41 9.9 23.1 3.0 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|435849770|ref|YP_007301711.1| - 1.3 8.1 37.5 0.073 12.2 17.4 2.7 2 1 0 2 2 2 0 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|435849771|ref|YP_007301712.1| - 2.5e-33 115.1 18.8 3.2e-33 114.8 13.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|435849771|ref|YP_007301712.1| - 1.7e-15 56.8 34.2 2.2e-14 53.1 24.0 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|435849771|ref|YP_007301712.1| - 1.3e-05 24.3 27.8 2.1e-05 23.7 18.8 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|435849771|ref|YP_007301712.1| - 0.18 11.0 32.0 0.078 12.2 17.3 2.8 2 1 0 2 2 2 0 ABC-2 family transporter protein PD40 PF07676.7 gi|435849773|ref|YP_007301714.1| - 2.3e-10 39.8 2.8 0.38 10.4 0.1 6.6 6 1 0 6 6 6 3 WD40-like Beta Propeller Repeat DPPIV_N PF00930.16 gi|435849773|ref|YP_007301714.1| - 0.0046 15.5 1.9 0.31 9.5 0.0 4.0 2 1 3 5 5 5 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Pectate_lyase22 PF14583.1 gi|435849773|ref|YP_007301714.1| - 0.013 13.9 0.2 0.58 8.5 0.0 3.4 2 1 1 3 3 3 0 Oligogalacturonate lyase T4-Gluco-transf PF09198.5 gi|435849773|ref|YP_007301714.1| - 0.064 12.5 0.1 1.3 8.3 0.0 2.7 2 0 0 2 2 2 0 Bacteriophage T4 beta-glucosyltransferase PD40 PF07676.7 gi|435849774|ref|YP_007301715.1| - 0.00028 20.4 5.8 0.59 9.8 0.0 4.3 5 0 0 5 5 5 2 WD40-like Beta Propeller Repeat DPPIV_N PF00930.16 gi|435849774|ref|YP_007301715.1| - 0.014 14.0 11.4 1.1 7.8 0.0 5.9 4 2 2 6 6 6 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Glyco_hydro_114 PF03537.8 gi|435849774|ref|YP_007301715.1| - 0.081 12.7 0.3 0.4 10.4 0.1 2.2 2 0 0 2 2 2 0 Glycoside-hydrolase family GH114 ABC2_membrane_2 PF12679.2 gi|435849775|ref|YP_007301716.1| - 3.2e-31 108.2 19.6 4.9e-31 107.6 13.6 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|435849775|ref|YP_007301716.1| - 7.9e-11 41.5 31.1 7.9e-11 41.5 21.5 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|435849775|ref|YP_007301716.1| - 3.1e-10 39.6 26.7 3.1e-10 39.6 18.5 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|435849775|ref|YP_007301716.1| - 0.00022 20.5 21.9 0.00022 20.5 15.2 2.9 2 1 1 3 3 3 1 ABC-2 family transporter protein DUF2921 PF11145.3 gi|435849775|ref|YP_007301716.1| - 0.065 10.9 0.3 0.09 10.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2921) ABC2_membrane_2 PF12679.2 gi|435849776|ref|YP_007301717.1| - 3.2e-31 108.2 20.5 6.1e-31 107.3 14.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|435849776|ref|YP_007301717.1| - 2.2e-14 53.2 29.7 2.2e-14 53.2 20.6 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|435849776|ref|YP_007301717.1| - 6e-05 22.2 36.7 0.00023 20.3 24.7 2.3 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|435849776|ref|YP_007301717.1| - 0.0028 16.8 26.8 0.0028 16.8 18.6 2.4 2 1 0 2 2 2 1 ABC-2 type transporter DUF3290 PF11694.3 gi|435849776|ref|YP_007301717.1| - 0.17 11.5 0.2 0.17 11.5 0.1 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF3290) ABC2_membrane_5 PF13346.1 gi|435849776|ref|YP_007301717.1| - 0.57 9.4 39.3 0.59 9.3 20.8 3.1 2 1 1 3 3 3 0 ABC-2 family transporter protein PPC PF04151.10 gi|435849777|ref|YP_007301718.1| - 5.8e-05 23.9 0.4 5.8e-05 23.9 0.3 1.8 2 0 0 2 2 2 1 Bacterial pre-peptidase C-terminal domain DUF1295 PF06966.7 gi|435849780|ref|YP_007301721.1| - 0.076 12.3 2.4 3.7 6.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1295) DUF4203 PF13886.1 gi|435849780|ref|YP_007301721.1| - 0.12 11.8 5.8 0.035 13.5 1.2 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4203) FUSC_2 PF13515.1 gi|435849780|ref|YP_007301721.1| - 0.47 10.3 6.0 0.44 10.4 3.4 1.5 1 1 0 1 1 1 0 Fusaric acid resistance protein-like Peptidase_M50 PF02163.17 gi|435849780|ref|YP_007301721.1| - 0.67 8.8 2.9 3 6.7 2.0 2.1 1 1 0 1 1 1 0 Peptidase family M50 DUF95 PF01944.12 gi|435849781|ref|YP_007301722.1| - 1.8e-27 96.0 14.0 2.1e-27 95.8 9.7 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF95 DUF2207 PF09972.4 gi|435849781|ref|YP_007301722.1| - 0.66 8.5 3.5 1.2 7.6 2.4 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4341 PF14241.1 gi|435849781|ref|YP_007301722.1| - 1.7 8.4 6.7 0.38 10.4 0.7 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4341) DoxX PF07681.7 gi|435849782|ref|YP_007301723.1| - 0.12 12.7 4.6 0.18 12.2 3.2 1.2 1 0 0 1 1 1 0 DoxX DoxX PF07681.7 gi|435849783|ref|YP_007301724.1| - 0.13 12.6 4.0 0.18 12.2 2.7 1.3 1 0 0 1 1 1 0 DoxX DUF1495 PF07381.6 gi|435849784|ref|YP_007301725.1| - 3.2e-26 90.7 0.2 3.7e-26 90.5 0.1 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) Yip1 PF04893.12 gi|435849785|ref|YP_007301726.1| - 5.1e-27 94.4 14.4 6.4e-27 94.1 10.0 1.0 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|435849785|ref|YP_007301726.1| - 0.0016 18.1 17.6 0.0045 16.6 12.1 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1282) Baculo_11_kDa PF06143.6 gi|435849785|ref|YP_007301726.1| - 4.7 6.6 6.0 0.91 8.9 0.0 2.5 3 0 0 3 3 3 0 Baculovirus 11 kDa family DDE_Tnp_IS1 PF03400.8 gi|435849786|ref|YP_007301727.1| - 5.2e-14 52.4 0.2 9.2e-14 51.6 0.1 1.4 1 0 0 1 1 1 1 IS1 transposase Terminase_5 PF06056.7 gi|435849786|ref|YP_007301727.1| - 9.6e-08 31.4 0.0 2.2e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.1 gi|435849786|ref|YP_007301727.1| - 3.8e-07 29.5 0.0 1.1e-06 28.0 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|435849786|ref|YP_007301727.1| - 1.7e-06 27.8 0.0 3.6e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|435849786|ref|YP_007301727.1| - 0.0009 19.3 0.0 0.002 18.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|435849786|ref|YP_007301727.1| - 0.00096 18.5 0.1 0.0026 17.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|435849786|ref|YP_007301727.1| - 0.0032 16.9 0.0 0.0083 15.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.8 gi|435849786|ref|YP_007301727.1| - 0.0041 16.5 7.1 0.0073 15.7 4.9 1.5 1 0 0 1 1 1 1 InsA N-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|435849786|ref|YP_007301727.1| - 0.0057 16.4 5.6 0.0057 16.4 3.9 1.7 2 0 0 2 2 2 1 Transposase zinc-ribbon domain HTH_Tnp_1 PF01527.15 gi|435849786|ref|YP_007301727.1| - 0.0059 16.5 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 Transposase Cullin_binding PF03556.10 gi|435849786|ref|YP_007301727.1| - 0.011 15.8 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 Cullin binding DDE_Tnp_4 PF13359.1 gi|435849786|ref|YP_007301727.1| - 0.012 15.1 0.1 0.053 13.1 0.0 1.9 1 1 0 1 1 1 0 DDE superfamily endonuclease GerE PF00196.14 gi|435849786|ref|YP_007301727.1| - 0.072 12.4 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF2387 PF09526.5 gi|435849786|ref|YP_007301727.1| - 0.097 12.6 0.4 0.23 11.4 0.3 1.6 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-Mss51 PF13824.1 gi|435849786|ref|YP_007301727.1| - 0.11 12.3 1.7 0.31 10.9 1.2 1.8 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Mu-like_Com PF10122.4 gi|435849786|ref|YP_007301727.1| - 0.13 11.3 2.2 0.22 10.6 1.5 1.4 1 0 0 1 1 1 0 Mu-like prophage protein Com OrfB_Zn_ribbon PF07282.6 gi|435849786|ref|YP_007301727.1| - 0.26 10.9 2.4 0.9 9.2 1.7 1.9 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin PF00301.15 gi|435849786|ref|YP_007301727.1| - 0.9 9.4 4.3 1.3 8.9 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.5 gi|435849786|ref|YP_007301727.1| - 1.2 9.1 4.1 4.9 7.2 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain EssA PF10661.4 gi|435849787|ref|YP_007301728.1| - 0.16 11.6 0.7 0.42 10.2 0.1 2.0 2 0 0 2 2 2 0 WXG100 protein secretion system (Wss), protein EssA ABC_tran PF00005.22 gi|435849788|ref|YP_007301729.1| - 5.1e-35 120.7 0.0 6.6e-35 120.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435849788|ref|YP_007301729.1| - 4.9e-15 56.2 0.0 6.5e-13 49.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|435849788|ref|YP_007301729.1| - 2.4e-09 36.7 0.5 2.8e-08 33.2 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|435849788|ref|YP_007301729.1| - 1.3e-07 31.0 0.2 0.00095 18.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|435849788|ref|YP_007301729.1| - 2.7e-05 23.6 0.1 5.1e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|435849788|ref|YP_007301729.1| - 5.5e-05 23.3 0.5 0.0029 17.7 0.3 2.3 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|435849788|ref|YP_007301729.1| - 0.00013 21.2 0.0 0.00022 20.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|435849788|ref|YP_007301729.1| - 0.00044 18.8 0.0 0.045 12.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|435849788|ref|YP_007301729.1| - 0.00049 20.1 0.3 0.0018 18.2 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|435849788|ref|YP_007301729.1| - 0.001 19.4 1.9 0.0018 18.6 1.3 1.4 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|435849788|ref|YP_007301729.1| - 0.0011 18.7 0.0 0.013 15.1 0.0 2.2 2 1 0 2 2 2 1 Archaeal ATPase AAA_10 PF12846.2 gi|435849788|ref|YP_007301729.1| - 0.002 17.6 0.4 0.0043 16.5 0.1 1.5 1 1 0 1 1 1 1 AAA-like domain AAA_33 PF13671.1 gi|435849788|ref|YP_007301729.1| - 0.0031 17.3 0.0 0.0065 16.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|435849788|ref|YP_007301729.1| - 0.0038 16.6 0.0 0.056 12.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|435849788|ref|YP_007301729.1| - 0.0045 16.8 0.0 0.0072 16.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|435849788|ref|YP_007301729.1| - 0.0063 16.8 1.1 0.13 12.5 0.8 2.3 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|435849788|ref|YP_007301729.1| - 0.0081 16.0 0.0 0.076 12.9 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|435849788|ref|YP_007301729.1| - 0.0093 16.7 0.1 0.019 15.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|435849788|ref|YP_007301729.1| - 0.011 15.2 0.3 0.22 10.9 0.0 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.10 gi|435849788|ref|YP_007301729.1| - 0.014 15.0 0.1 4.6 6.9 0.0 2.2 2 0 0 2 2 2 0 NTPase NACHT PF05729.7 gi|435849788|ref|YP_007301729.1| - 0.014 15.0 0.2 0.17 11.5 0.0 2.1 2 0 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.18 gi|435849788|ref|YP_007301729.1| - 0.02 14.8 0.5 0.048 13.6 0.3 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase T2SE PF00437.15 gi|435849788|ref|YP_007301729.1| - 0.021 13.7 0.5 0.048 12.5 0.0 1.8 2 1 0 2 2 2 0 Type II/IV secretion system protein MobB PF03205.9 gi|435849788|ref|YP_007301729.1| - 0.033 13.8 0.5 0.42 10.3 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|435849788|ref|YP_007301729.1| - 0.037 13.7 0.1 0.64 9.8 0.0 2.4 2 1 0 2 2 2 0 Part of AAA domain AAA_24 PF13479.1 gi|435849788|ref|YP_007301729.1| - 0.052 13.1 0.0 0.56 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|435849788|ref|YP_007301729.1| - 0.086 12.4 0.0 0.54 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.4 gi|435849788|ref|YP_007301729.1| - 0.1 11.0 0.2 0.25 9.7 0.1 1.5 1 1 0 1 1 1 0 RNA12 protein Miro PF08477.8 gi|435849788|ref|YP_007301729.1| - 0.12 12.9 0.0 0.33 11.4 0.0 1.9 1 1 0 1 1 1 0 Miro-like protein MacB_PCD PF12704.2 gi|435849789|ref|YP_007301730.1| - 3.2e-37 128.3 0.5 3.2e-37 128.3 0.3 2.5 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|435849789|ref|YP_007301730.1| - 1.9e-23 82.5 16.7 8.2e-23 80.4 9.1 2.3 2 0 0 2 2 2 1 FtsX-like permease family YjgP_YjgQ PF03739.9 gi|435849789|ref|YP_007301730.1| - 0.28 9.8 7.1 0.062 12.0 2.3 1.8 1 1 0 1 1 1 0 Predicted permease YjgP/YjgQ family Tetraspannin PF00335.15 gi|435849789|ref|YP_007301730.1| - 2.3 7.4 17.8 1.1 8.5 5.2 3.0 3 0 0 3 3 3 0 Tetraspanin family HTH_5 PF01022.15 gi|435849790|ref|YP_007301731.1| - 1.2e-05 24.9 0.0 0.063 12.9 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|435849790|ref|YP_007301731.1| - 0.00014 21.5 0.3 0.023 14.3 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|435849790|ref|YP_007301731.1| - 0.00048 19.4 1.4 0.012 14.9 0.0 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|435849790|ref|YP_007301731.1| - 0.0034 17.0 0.4 0.7 9.6 0.0 2.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF2513 PF10711.4 gi|435849790|ref|YP_007301731.1| - 0.046 13.7 2.3 1.1 9.4 0.2 2.8 2 1 1 3 3 3 0 Hypothetical protein (DUF2513) HTH_34 PF13601.1 gi|435849790|ref|YP_007301731.1| - 0.059 13.4 0.2 0.2 11.7 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain zinc_ribbon_2 PF13240.1 gi|435849790|ref|YP_007301731.1| - 0.06 12.8 1.3 11 5.5 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain HTH_12 PF08461.5 gi|435849790|ref|YP_007301731.1| - 0.072 12.8 1.9 0.5 10.1 0.1 2.5 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|435849790|ref|YP_007301731.1| - 0.1 12.4 1.8 7 6.5 0.1 2.6 2 0 0 2 2 2 0 Winged helix-turn-helix LIM PF00412.17 gi|435849790|ref|YP_007301731.1| - 0.44 10.6 3.2 3.5 7.7 0.0 3.2 3 0 0 3 3 3 0 LIM domain Radical_SAM PF04055.16 gi|435849792|ref|YP_007301733.1| - 2.1e-14 54.0 0.4 4.5e-14 52.9 0.3 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|435849792|ref|YP_007301733.1| - 5.7e-08 32.8 0.2 3.9e-07 30.1 0.0 2.3 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|435849792|ref|YP_007301733.1| - 6.1e-08 32.8 2.0 1.2e-07 31.9 0.3 2.1 2 1 0 2 2 2 1 4Fe-4S single cluster domain CBM_3 PF00942.13 gi|435849792|ref|YP_007301733.1| - 0.099 12.6 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Cellulose binding domain SEC-C PF02810.10 gi|435849793|ref|YP_007301734.1| - 1.8e-05 24.1 7.8 4e-05 23.0 5.4 1.6 1 0 0 1 1 1 1 SEC-C motif PuR_N PF09182.5 gi|435849793|ref|YP_007301734.1| - 0.04 13.5 0.0 0.1 12.1 0.0 1.8 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal DUF1699 PF08004.6 gi|435849794|ref|YP_007301735.1| - 7e-58 193.8 0.4 7.9e-58 193.6 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) AAA_14 PF13173.1 gi|435849795|ref|YP_007301736.1| - 5.1e-35 120.1 0.9 5.1e-35 120.1 0.6 2.5 2 1 1 3 3 3 1 AAA domain DUF4143 PF13635.1 gi|435849795|ref|YP_007301736.1| - 2.9e-13 49.8 0.4 5.2e-13 48.9 0.1 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|435849795|ref|YP_007301736.1| - 7.3e-09 35.6 7.2 0.00014 21.6 0.0 3.0 2 2 1 3 3 3 2 Archaeal ATPase AAA_22 PF13401.1 gi|435849795|ref|YP_007301736.1| - 6.6e-06 26.2 0.0 0.00024 21.2 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|435849795|ref|YP_007301736.1| - 0.00018 20.9 0.0 0.00032 20.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|435849795|ref|YP_007301736.1| - 0.0031 17.5 0.0 0.048 13.6 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain RNA_helicase PF00910.17 gi|435849795|ref|YP_007301736.1| - 0.029 14.5 0.0 0.13 12.4 0.0 2.1 2 1 0 2 2 2 0 RNA helicase AAA PF00004.24 gi|435849795|ref|YP_007301736.1| - 0.05 13.8 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SE PF00437.15 gi|435849795|ref|YP_007301736.1| - 0.097 11.5 0.2 0.8 8.5 0.0 2.3 2 1 0 3 3 3 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|435849795|ref|YP_007301736.1| - 0.1 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family HTH_23 PF13384.1 gi|435849796|ref|YP_007301737.1| - 2.8e-06 26.7 0.0 5.5e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|435849796|ref|YP_007301737.1| - 6.4e-06 25.6 0.0 1.2e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|435849796|ref|YP_007301737.1| - 1.9e-05 24.5 0.0 3.6e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|435849796|ref|YP_007301737.1| - 0.00076 18.9 0.1 0.002 17.6 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|435849796|ref|YP_007301737.1| - 0.0018 18.1 0.0 0.0032 17.3 0.0 1.3 1 0 0 1 1 1 1 Transposase HTH_29 PF13551.1 gi|435849796|ref|YP_007301737.1| - 0.0031 17.6 0.0 0.0057 16.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|435849796|ref|YP_007301737.1| - 0.0061 15.9 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 DUF2387 PF09526.5 gi|435849796|ref|YP_007301737.1| - 0.0091 15.9 1.0 0.016 15.1 0.7 1.4 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1 PF03811.8 gi|435849796|ref|YP_007301737.1| - 0.021 14.3 9.0 0.042 13.3 6.3 1.5 1 0 0 1 1 1 0 InsA N-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|435849796|ref|YP_007301737.1| - 0.029 14.1 7.8 0.047 13.5 5.4 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF1670 PF07900.6 gi|435849796|ref|YP_007301737.1| - 0.089 11.9 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) zf-Mss51 PF13824.1 gi|435849796|ref|YP_007301737.1| - 0.12 12.2 2.2 0.21 11.4 1.5 1.4 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 GcrA PF07750.6 gi|435849797|ref|YP_007301738.1| - 0.00033 20.8 0.0 0.18 11.9 0.0 2.2 2 0 0 2 2 2 2 GcrA cell cycle regulator HTH_38 PF13936.1 gi|435849797|ref|YP_007301738.1| - 0.00064 19.2 0.4 0.84 9.2 0.0 3.1 3 0 0 3 3 3 2 Helix-turn-helix domain DUF285 PF03382.9 gi|435849797|ref|YP_007301738.1| - 0.015 14.8 0.0 1.9 8.0 0.0 2.2 2 0 0 2 2 2 0 Mycoplasma protein of unknown function, DUF285 TrmB PF01978.14 gi|435849797|ref|YP_007301738.1| - 0.11 12.2 0.1 2 8.1 0.0 2.5 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB HrcA_DNA-bdg PF03444.10 gi|435849797|ref|YP_007301738.1| - 0.11 11.9 0.3 26 4.3 0.0 3.0 3 0 0 3 3 3 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DDE_Tnp_1_6 PF13751.1 gi|435849797|ref|YP_007301738.1| - 0.13 12.2 0.7 0.24 11.4 0.5 1.5 1 1 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|435849798|ref|YP_007301739.1| - 8.1e-05 22.2 0.4 0.00012 21.7 0.3 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF3931 PF13082.1 gi|435849798|ref|YP_007301739.1| - 0.092 12.6 0.3 0.53 10.1 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3931) Exo5 PF09810.4 gi|435849799|ref|YP_007301740.1| - 0.11 11.6 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 Exonuclease V - a 5' deoxyribonuclease zf-H2C2_5 PF13909.1 gi|435849799|ref|YP_007301740.1| - 0.12 12.7 1.6 0.23 11.7 1.1 1.5 1 0 0 1 1 1 0 C2H2-type zinc-finger domain DDE_Tnp_IS1 PF03400.8 gi|435849800|ref|YP_007301741.1| - 1.9e-14 53.8 0.2 3.6e-14 52.9 0.1 1.4 1 0 0 1 1 1 1 IS1 transposase Terminase_5 PF06056.7 gi|435849800|ref|YP_007301741.1| - 9.5e-08 31.4 0.0 2.2e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.1 gi|435849800|ref|YP_007301741.1| - 3.8e-07 29.5 0.0 1.1e-06 28.0 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|435849800|ref|YP_007301741.1| - 1.7e-06 27.8 0.0 3.6e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|435849800|ref|YP_007301741.1| - 0.00088 19.3 0.0 0.0019 18.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|435849800|ref|YP_007301741.1| - 0.00095 18.5 0.1 0.0026 17.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|435849800|ref|YP_007301741.1| - 0.0032 16.9 0.0 0.0083 15.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.8 gi|435849800|ref|YP_007301741.1| - 0.004 16.6 7.1 0.0073 15.7 4.9 1.5 1 0 0 1 1 1 1 InsA N-terminal domain HTH_Tnp_1 PF01527.15 gi|435849800|ref|YP_007301741.1| - 0.005 16.7 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 Transposase Zn_Tnp_IS1595 PF12760.2 gi|435849800|ref|YP_007301741.1| - 0.0057 16.4 5.6 0.0057 16.4 3.9 1.7 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DDE_Tnp_4 PF13359.1 gi|435849800|ref|YP_007301741.1| - 0.01 15.4 0.1 0.047 13.2 0.0 2.0 1 1 0 1 1 1 0 DDE superfamily endonuclease GerE PF00196.14 gi|435849800|ref|YP_007301741.1| - 0.071 12.4 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF2387 PF09526.5 gi|435849800|ref|YP_007301741.1| - 0.084 12.8 0.5 0.2 11.5 0.3 1.6 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Cullin_binding PF03556.10 gi|435849800|ref|YP_007301741.1| - 0.096 12.8 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Cullin binding zf-Mss51 PF13824.1 gi|435849800|ref|YP_007301741.1| - 0.11 12.3 1.8 0.33 10.8 1.2 1.8 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Mu-like_Com PF10122.4 gi|435849800|ref|YP_007301741.1| - 0.13 11.3 2.2 0.22 10.6 1.5 1.4 1 0 0 1 1 1 0 Mu-like prophage protein Com Elf1 PF05129.8 gi|435849800|ref|YP_007301741.1| - 0.23 11.1 1.8 0.39 10.4 0.4 1.8 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.6 gi|435849800|ref|YP_007301741.1| - 0.27 10.9 2.5 0.84 9.3 1.7 1.9 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|435849800|ref|YP_007301741.1| - 1.3 9.0 4.1 4.9 7.1 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|435849800|ref|YP_007301741.1| - 2 8.3 5.0 1.8 8.5 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin Exo5 PF09810.4 gi|435849801|ref|YP_007301742.1| - 0.019 14.1 0.1 0.051 12.7 0.0 1.6 1 1 1 2 2 2 0 Exonuclease V - a 5' deoxyribonuclease HSDR_N PF04313.9 gi|435849801|ref|YP_007301742.1| - 0.032 13.9 0.1 0.079 12.7 0.0 1.6 2 0 0 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_1 PF12705.2 gi|435849801|ref|YP_007301742.1| - 0.085 12.2 0.0 0.15 11.4 0.0 1.4 1 1 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DUF4143 PF13635.1 gi|435849802|ref|YP_007301743.1| - 0.089 12.9 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) DrsE PF02635.10 gi|435849803|ref|YP_007301744.1| - 0.028 14.4 0.0 0.035 14.1 0.0 1.1 1 0 0 1 1 1 0 DsrE/DsrF-like family SNF2_N PF00176.18 gi|435849804|ref|YP_007301745.1| - 2.1e-16 59.5 0.1 7.9e-14 51.1 0.0 3.1 2 2 1 3 3 3 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|435849804|ref|YP_007301745.1| - 1.9e-10 40.4 0.0 5.2e-10 39.0 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|435849804|ref|YP_007301745.1| - 7.9e-06 25.8 0.0 0.0031 17.3 0.0 3.1 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|435849804|ref|YP_007301745.1| - 0.00011 21.7 0.0 0.017 14.6 0.0 3.1 2 1 0 2 2 2 1 DEAD/DEAH box helicase DUF4391 PF14335.1 gi|435849805|ref|YP_007301746.1| - 9.9e-60 201.6 0.0 1.8e-59 200.8 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4391) DUF3883 PF13020.1 gi|435849806|ref|YP_007301747.1| - 0.061 13.0 2.9 0.19 11.4 1.9 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF3883) N6_N4_Mtase PF01555.13 gi|435849807|ref|YP_007301748.1| - 9.1e-38 130.0 2.1 1.4e-37 129.4 1.5 1.3 1 0 0 1 1 1 1 DNA methylase Cons_hypoth95 PF03602.10 gi|435849807|ref|YP_007301748.1| - 0.079 12.3 0.9 0.24 10.7 0.0 2.2 3 0 0 3 3 3 0 Conserved hypothetical protein 95 ResIII PF04851.10 gi|435849808|ref|YP_007301749.1| - 3.3e-15 56.4 0.1 1.3e-14 54.4 0.1 2.1 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|435849808|ref|YP_007301749.1| - 3.8e-05 23.2 0.0 0.00011 21.7 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase PhoH PF02562.11 gi|435849808|ref|YP_007301749.1| - 0.026 13.7 0.7 0.11 11.7 0.0 2.3 3 0 0 3 3 3 0 PhoH-like protein Mrr_cat PF04471.7 gi|435849809|ref|YP_007301750.1| - 2e-06 27.5 1.0 1.1e-05 25.1 0.1 2.5 2 0 0 2 2 2 1 Restriction endonuclease HSDR_N_2 PF13588.1 gi|435849809|ref|YP_007301750.1| - 0.00041 20.1 0.0 0.0015 18.3 0.0 1.9 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) CENP-N PF05238.8 gi|435849809|ref|YP_007301750.1| - 0.0015 17.6 1.6 0.0027 16.8 1.1 1.4 1 0 0 1 1 1 1 Kinetochore protein CHL4 like Cauli_AT PF03233.8 gi|435849809|ref|YP_007301750.1| - 0.11 12.2 15.0 2.5 7.7 0.2 3.4 3 0 0 3 3 3 0 Aphid transmission protein AHH PF14412.1 gi|435849809|ref|YP_007301750.1| - 0.23 11.4 0.1 0.23 11.4 0.1 2.5 3 0 0 3 3 3 0 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH DUF972 PF06156.8 gi|435849809|ref|YP_007301750.1| - 0.3 11.4 11.4 0.57 10.5 0.2 3.7 3 1 0 3 3 3 0 Protein of unknown function (DUF972) Laminin_II PF06009.7 gi|435849809|ref|YP_007301750.1| - 2.9 7.6 11.0 1.8 8.3 1.6 3.1 3 0 0 3 3 3 0 Laminin Domain II Fzo_mitofusin PF04799.8 gi|435849809|ref|YP_007301750.1| - 5.3 6.3 10.7 0.35 10.2 0.2 2.8 3 0 0 3 3 3 0 fzo-like conserved region DUF2346 PF09803.4 gi|435849809|ref|YP_007301750.1| - 6 6.7 7.3 2.2 8.1 1.8 2.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2346) Plasmid_stabil PF05016.9 gi|435849811|ref|YP_007301752.1| - 9.5e-12 45.1 0.0 1.1e-11 44.9 0.0 1.0 1 0 0 1 1 1 1 Plasmid stabilisation system protein HATPase_c PF02518.21 gi|435849813|ref|YP_007301754.1| - 6.8e-05 22.5 0.0 0.00015 21.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HNH_2 PF13391.1 gi|435849813|ref|YP_007301754.1| - 0.057 13.2 0.4 0.6 9.9 0.1 2.7 2 0 0 2 2 2 0 HNH endonuclease SNF2_N PF00176.18 gi|435849814|ref|YP_007301755.1| - 5.1e-22 78.0 0.1 8.5e-22 77.3 0.1 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|435849814|ref|YP_007301755.1| - 6e-19 67.6 0.1 2e-17 62.8 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|435849814|ref|YP_007301755.1| - 4.1e-08 33.2 0.0 2.7e-07 30.6 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|435849814|ref|YP_007301755.1| - 2.2e-06 27.2 0.0 7.5e-06 25.5 0.0 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_34 PF13872.1 gi|435849814|ref|YP_007301755.1| - 0.0035 16.1 0.0 0.0059 15.4 0.0 1.2 1 0 0 1 1 1 1 P-loop containing NTP hydrolase pore-1 AAA_22 PF13401.1 gi|435849814|ref|YP_007301755.1| - 0.013 15.6 0.0 0.08 13.0 0.1 2.4 2 1 0 2 2 2 0 AAA domain Phage_Mu_Gam PF07352.7 gi|435849814|ref|YP_007301755.1| - 0.27 10.7 11.5 0.053 13.0 2.7 2.5 2 0 0 2 2 2 0 Bacteriophage Mu Gam like protein DUF3373 PF11853.3 gi|435849815|ref|YP_007301756.1| - 0.33 9.4 6.0 0.46 8.9 4.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) DUF310 PF03750.8 gi|435849815|ref|YP_007301756.1| - 0.37 11.0 10.4 0.12 12.6 4.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF310) Cupin_8 PF13621.1 gi|435849815|ref|YP_007301756.1| - 0.78 9.1 6.3 1.3 8.4 4.4 1.5 1 1 0 1 1 1 0 Cupin-like domain BCL_N PF04714.8 gi|435849815|ref|YP_007301756.1| - 2.7 7.6 8.4 3.5 7.2 0.3 2.7 2 0 0 2 2 2 0 BCL7, N-terminal conserver region SlyX PF04102.7 gi|435849815|ref|YP_007301756.1| - 2.7 8.4 10.9 0.5 10.7 4.0 2.6 3 1 0 3 3 3 0 SlyX NAD_binding_1 PF00175.16 gi|435849815|ref|YP_007301756.1| - 3.1 8.4 8.3 0.39 11.3 0.3 2.5 1 1 1 2 2 2 0 Oxidoreductase NAD-binding domain Cob_adeno_trans PF01923.13 gi|435849815|ref|YP_007301756.1| - 3.5 7.3 10.3 1.1 8.9 2.7 2.3 1 1 2 3 3 3 0 Cobalamin adenosyltransferase DUF3287 PF11690.3 gi|435849815|ref|YP_007301756.1| - 8.5 6.4 13.1 0.63 10.1 0.6 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF3287) UvrD-helicase PF00580.16 gi|435849816|ref|YP_007301757.1| - 3.8e-60 203.8 0.7 3.8e-60 203.8 0.5 3.2 3 1 0 3 3 3 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|435849816|ref|YP_007301757.1| - 1.5e-54 185.8 4.0 1.5e-54 185.8 2.8 1.7 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|435849816|ref|YP_007301757.1| - 1.2e-42 146.1 0.0 2.3e-42 145.1 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|435849816|ref|YP_007301757.1| - 1.7e-12 46.9 0.0 1.7e-11 43.6 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|435849816|ref|YP_007301757.1| - 8.3e-12 45.1 0.2 6.2e-11 42.3 0.1 2.4 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_12 PF13087.1 gi|435849816|ref|YP_007301757.1| - 5.1e-06 26.0 0.1 0.0024 17.2 0.0 3.4 2 1 1 3 3 3 1 AAA domain Viral_helicase1 PF01443.13 gi|435849816|ref|YP_007301757.1| - 1.2e-05 25.0 0.3 0.27 10.7 0.0 3.9 4 0 0 4 4 4 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|435849816|ref|YP_007301757.1| - 0.05 13.1 0.0 0.16 11.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain TPR_11 PF13414.1 gi|435849817|ref|YP_007301758.1| - 3.8e-48 160.9 8.0 3.4e-10 39.4 0.0 5.1 4 1 1 5 5 5 5 TPR repeat TPR_1 PF00515.23 gi|435849817|ref|YP_007301758.1| - 7e-47 155.1 8.1 7.4e-07 28.5 0.0 8.2 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|435849817|ref|YP_007301758.1| - 4.5e-46 151.0 6.4 1.3e-05 24.7 0.0 8.2 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_17 PF13431.1 gi|435849817|ref|YP_007301758.1| - 1.6e-30 102.7 1.0 0.00016 21.6 0.0 9.0 8 1 1 9 9 9 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|435849817|ref|YP_007301758.1| - 1.9e-28 96.0 10.7 0.0026 17.4 0.0 8.5 7 1 2 9 9 9 7 Tetratricopeptide repeat TPR_16 PF13432.1 gi|435849817|ref|YP_007301758.1| - 1.8e-25 89.0 0.0 9e-05 23.0 0.0 5.1 3 2 3 6 6 6 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|435849817|ref|YP_007301758.1| - 8.3e-24 83.3 9.1 3.6e-06 26.8 0.2 5.8 1 1 6 7 7 7 7 Tetratricopeptide repeat Apc3 PF12895.2 gi|435849817|ref|YP_007301758.1| - 7.9e-23 80.4 3.6 8.9e-07 28.9 0.4 4.3 3 1 1 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.1 gi|435849817|ref|YP_007301758.1| - 2.4e-22 77.3 0.0 0.012 16.1 0.0 8.1 1 1 7 8 8 8 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|435849817|ref|YP_007301758.1| - 3e-18 65.4 0.0 0.00052 19.8 0.0 5.9 3 2 2 6 6 6 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|435849817|ref|YP_007301758.1| - 1.7e-17 63.5 0.1 0.00025 21.2 0.0 5.2 1 1 7 8 8 8 8 Tetratricopeptide repeat TPR_7 PF13176.1 gi|435849817|ref|YP_007301758.1| - 6e-14 50.6 0.4 0.49 10.3 0.0 7.1 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|435849817|ref|YP_007301758.1| - 1.3e-09 37.8 3.3 3.7 8.2 0.0 7.0 8 0 0 8 8 6 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|435849817|ref|YP_007301758.1| - 2.3e-09 36.9 4.6 0.059 13.2 0.0 6.4 6 1 1 7 7 7 2 Fis1 C-terminal tetratricopeptide repeat TOM20_plant PF06552.7 gi|435849817|ref|YP_007301758.1| - 2.3e-05 24.0 0.1 0.54 9.8 0.0 3.6 3 1 1 4 4 4 2 Plant specific mitochondrial import receptor subunit TOM20 NARP1 PF12569.3 gi|435849817|ref|YP_007301758.1| - 4.6e-05 22.3 1.2 0.027 13.2 0.0 3.4 1 1 3 4 4 4 2 NMDA receptor-regulated protein 1 Paf67 PF10255.4 gi|435849817|ref|YP_007301758.1| - 5.9e-05 22.1 0.0 0.03 13.1 0.0 3.3 2 1 2 4 4 4 1 RNA polymerase I-associated factor PAF67 TPR_10 PF13374.1 gi|435849817|ref|YP_007301758.1| - 7e-05 22.6 0.6 6.6 6.8 0.0 5.8 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_3 PF07720.7 gi|435849817|ref|YP_007301758.1| - 0.00019 21.1 4.1 4.2 7.2 0.0 4.6 5 0 0 5 5 4 1 Tetratricopeptide repeat DUF3808 PF10300.4 gi|435849817|ref|YP_007301758.1| - 0.00047 18.8 4.8 0.004 15.7 0.2 2.1 1 1 0 2 2 2 1 Protein of unknown function (DUF3808) TPR_20 PF14561.1 gi|435849817|ref|YP_007301758.1| - 0.0007 19.6 0.3 19 5.4 0.0 4.7 2 2 4 6 6 6 0 Tetratricopeptide repeat PPR PF01535.15 gi|435849817|ref|YP_007301758.1| - 0.0054 16.6 6.8 43 4.3 0.0 6.3 8 0 0 8 8 6 0 PPR repeat TPR_4 PF07721.9 gi|435849817|ref|YP_007301758.1| - 0.1 13.0 0.3 55 4.6 0.0 3.6 3 1 1 4 4 2 0 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|435849817|ref|YP_007301758.1| - 0.11 11.7 1.1 35 3.4 0.0 3.9 2 2 1 4 4 4 0 Coatomer epsilon subunit DUF3856 PF12968.2 gi|435849817|ref|YP_007301758.1| - 0.15 11.9 2.3 4.3 7.1 0.0 4.1 4 2 2 6 6 6 0 Domain of Unknown Function (DUF3856) CSD PF00313.17 gi|435849818|ref|YP_007301759.1| - 0.0028 17.4 0.1 0.009 15.7 0.0 2.0 2 0 0 2 2 2 1 'Cold-shock' DNA-binding domain UvrD-helicase PF00580.16 gi|435849818|ref|YP_007301759.1| - 0.16 11.2 7.6 0.11 11.8 3.8 1.6 1 1 1 2 2 2 0 UvrD/REP helicase N-terminal domain DUF1887 PF09002.6 gi|435849819|ref|YP_007301760.1| - 5.7e-06 24.9 0.0 7.6e-06 24.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) TrmB PF01978.14 gi|435849819|ref|YP_007301760.1| - 1.5e-05 24.5 0.0 4.2e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|435849819|ref|YP_007301760.1| - 2.3e-05 23.9 0.0 5.3e-05 22.8 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|435849819|ref|YP_007301760.1| - 0.00014 21.1 0.0 0.00026 20.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Cas_Cas02710 PF09670.5 gi|435849819|ref|YP_007301760.1| - 0.00016 20.4 0.1 0.00021 20.0 0.1 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) Cas_APE2256 PF09651.5 gi|435849819|ref|YP_007301760.1| - 0.00035 20.2 0.0 0.00061 19.5 0.0 1.5 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) HTH_20 PF12840.2 gi|435849819|ref|YP_007301760.1| - 0.0012 18.5 0.0 0.0026 17.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|435849819|ref|YP_007301760.1| - 0.0039 16.9 0.1 0.0071 16.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|435849819|ref|YP_007301760.1| - 0.0067 16.4 0.1 0.029 14.3 0.1 2.1 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|435849819|ref|YP_007301760.1| - 0.018 14.6 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.15 gi|435849819|ref|YP_007301760.1| - 0.019 15.0 0.0 0.043 13.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_CodY PF08222.6 gi|435849819|ref|YP_007301760.1| - 0.033 13.5 0.0 0.062 12.6 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain Cas_NE0113 PF09623.5 gi|435849819|ref|YP_007301760.1| - 0.043 13.2 0.1 0.17 11.3 0.0 1.8 1 1 1 2 2 2 0 CRISPR-associated protein NE0113 (Cas_NE0113) HrcA_DNA-bdg PF03444.10 gi|435849819|ref|YP_007301760.1| - 0.1 12.0 0.1 0.27 10.7 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Glucosamine_iso PF01182.15 gi|435849819|ref|YP_007301760.1| - 0.1 12.2 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase MarR PF01047.17 gi|435849819|ref|YP_007301760.1| - 0.13 11.9 0.3 0.29 10.8 0.0 1.7 2 0 0 2 2 2 0 MarR family Disaggr_repeat PF06848.6 gi|435849820|ref|YP_007301761.1| - 3.8e-155 512.0 12.9 2.8e-79 264.7 2.0 2.3 2 0 0 2 2 2 2 Disaggregatase related repeat TGFb_propeptide PF00688.13 gi|435849820|ref|YP_007301761.1| - 2.6e-12 46.5 0.0 0.044 13.0 0.0 4.1 4 0 0 4 4 4 4 TGF-beta propeptide PKD PF00801.15 gi|435849820|ref|YP_007301761.1| - 2.5e-10 39.9 7.9 2.5e-10 39.9 5.5 3.0 4 0 0 4 4 4 1 PKD domain Glyco_hydro_39 PF01229.12 gi|435849820|ref|YP_007301761.1| - 1e-07 30.7 0.4 1.7e-07 30.0 0.3 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 39 Glyco_hydro_53 PF07745.8 gi|435849820|ref|YP_007301761.1| - 8.3e-06 24.8 0.9 4.4e-05 22.4 0.6 2.0 1 1 0 1 1 1 1 Glycosyl hydrolase family 53 Glyco_hydro_10 PF00331.15 gi|435849820|ref|YP_007301761.1| - 0.012 14.7 0.6 0.33 9.9 0.0 2.2 2 0 0 2 2 2 0 Glycosyl hydrolase family 10 Cellulase-like PF12876.2 gi|435849820|ref|YP_007301761.1| - 0.015 15.7 0.0 0.3 11.5 0.0 2.7 2 0 0 2 2 2 0 Sugar-binding cellulase-like UPF0122 PF04297.9 gi|435849823|ref|YP_007301764.1| - 0.69 9.9 11.7 0.22 11.5 5.2 2.1 1 1 1 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like FGE-sulfatase PF03781.11 gi|435849824|ref|YP_007301765.1| - 8e-45 153.2 5.7 1.9e-44 151.9 3.9 1.7 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 FYVE PF01363.16 gi|435849824|ref|YP_007301765.1| - 0.0047 16.7 10.2 0.015 15.1 7.1 1.9 1 0 0 1 1 1 1 FYVE zinc finger Prok-RING_1 PF14446.1 gi|435849824|ref|YP_007301765.1| - 0.37 10.5 10.1 0.13 12.0 4.9 1.8 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C3HC4_2 PF13923.1 gi|435849824|ref|YP_007301765.1| - 0.76 9.8 8.3 2.5 8.1 5.8 2.0 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) HypA PF01155.14 gi|435849824|ref|YP_007301765.1| - 3 7.5 9.4 9.7 5.9 5.0 2.5 2 1 1 3 3 3 0 Hydrogenase expression/synthesis hypA family zf-B_box PF00643.19 gi|435849824|ref|YP_007301765.1| - 4.9 7.1 11.4 4.1 7.3 5.2 2.4 2 0 0 2 2 2 0 B-box zinc finger Disaggr_repeat PF06848.6 gi|435849825|ref|YP_007301766.1| - 1.1e-230 758.2 25.0 4.5e-78 260.8 2.2 3.7 3 0 0 3 3 3 3 Disaggregatase related repeat LVIVD PF08309.6 gi|435849825|ref|YP_007301766.1| - 1.5e-136 443.1 139.1 4.1e-15 54.4 2.2 15.1 14 0 0 14 14 14 14 LVIVD repeat PKD PF00801.15 gi|435849825|ref|YP_007301766.1| - 1.3e-41 140.1 56.9 1.8e-11 43.6 4.2 6.5 5 0 0 5 5 5 4 PKD domain TGFb_propeptide PF00688.13 gi|435849825|ref|YP_007301766.1| - 9.9e-14 51.2 0.0 0.22 10.7 0.0 6.2 6 0 0 6 6 6 5 TGF-beta propeptide Y_Y_Y PF07495.8 gi|435849825|ref|YP_007301766.1| - 5.6e-07 29.2 12.3 0.32 10.7 0.2 5.4 5 0 0 5 5 5 3 Y_Y_Y domain DUF4625 PF15418.1 gi|435849825|ref|YP_007301766.1| - 2.1e-05 24.6 9.4 7.4 6.7 0.1 5.6 4 3 1 5 5 5 3 Domain of unknown function (DUF4625) DUF4398 PF14346.1 gi|435849825|ref|YP_007301766.1| - 0.017 15.1 7.2 1.1 9.3 1.2 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) Gmad2 PF10648.4 gi|435849825|ref|YP_007301766.1| - 0.03 14.4 19.3 3.2 7.9 0.3 6.0 4 2 0 4 4 4 0 Immunoglobulin-like domain of bacterial spore germination He_PIG PF05345.7 gi|435849825|ref|YP_007301766.1| - 0.17 11.9 54.2 0.88 9.6 1.6 8.5 7 0 0 7 7 7 0 Putative Ig domain LVIVD PF08309.6 gi|435849826|ref|YP_007301767.1| - 7.8e-13 47.1 1.9 9.6e-09 34.1 0.1 2.4 2 0 0 2 2 2 2 LVIVD repeat Disaggr_repeat PF06848.6 gi|435849827|ref|YP_007301768.1| - 6.6e-154 508.0 14.3 1.6e-77 259.0 2.6 2.4 2 0 0 2 2 2 2 Disaggregatase related repeat PKD PF00801.15 gi|435849827|ref|YP_007301768.1| - 4.1e-12 45.6 5.9 4.1e-12 45.6 4.1 2.6 3 0 0 3 3 3 1 PKD domain TGFb_propeptide PF00688.13 gi|435849827|ref|YP_007301768.1| - 3.8e-07 29.6 0.0 1 8.6 0.0 4.1 4 0 0 4 4 4 2 TGF-beta propeptide DERM PF14704.1 gi|435849827|ref|YP_007301768.1| - 0.00013 21.9 5.3 0.045 13.7 0.3 3.8 2 1 1 3 3 3 3 Dermatopontin Calsarcin PF05556.6 gi|435849827|ref|YP_007301768.1| - 0.12 11.6 0.0 24 4.0 0.0 2.8 3 0 0 3 3 3 0 Calcineurin-binding protein (Calsarcin) Inhibitor_I42 PF09394.5 gi|435849827|ref|YP_007301768.1| - 1.6 9.1 20.1 1.4 9.3 0.1 6.7 5 2 2 8 8 8 0 Chagasin family peptidase inhibitor I42 Y1_Tnp PF01797.11 gi|435849828|ref|YP_007301769.1| - 1e-40 138.3 0.4 1.2e-40 138.1 0.3 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_IS605 PF01385.14 gi|435849829|ref|YP_007301770.1| - 3.6e-42 144.2 3.5 4.8e-42 143.8 2.4 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|435849829|ref|YP_007301770.1| - 2.1e-25 88.1 0.2 5.3e-25 86.8 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|435849829|ref|YP_007301770.1| - 3.6e-16 58.2 1.0 8e-16 57.0 0.7 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|435849829|ref|YP_007301770.1| - 0.0039 16.9 0.4 0.011 15.5 0.3 1.8 1 0 0 1 1 1 1 Double zinc ribbon FYVE PF01363.16 gi|435849829|ref|YP_007301770.1| - 0.013 15.3 1.3 0.02 14.7 0.2 1.9 2 0 0 2 2 2 0 FYVE zinc finger zf-NADH-PPase PF09297.6 gi|435849829|ref|YP_007301770.1| - 0.023 14.1 0.5 0.048 13.1 0.4 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|435849829|ref|YP_007301770.1| - 0.031 13.4 0.9 1.4 8.1 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain DUF3781 PF12636.2 gi|435849829|ref|YP_007301770.1| - 0.071 13.0 0.2 0.35 10.8 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3781) TF_Zn_Ribbon PF08271.7 gi|435849829|ref|YP_007301770.1| - 0.091 12.0 1.4 0.55 9.5 0.1 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|435849829|ref|YP_007301770.1| - 0.095 12.4 2.4 0.51 10.0 1.7 2.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|435849829|ref|YP_007301770.1| - 0.26 10.8 1.7 1.3 8.6 1.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DUF164 PF02591.10 gi|435849829|ref|YP_007301770.1| - 0.48 10.2 2.6 1.8 8.4 1.8 2.0 1 1 0 1 1 1 0 Putative zinc ribbon domain DUF1610 PF07754.6 gi|435849829|ref|YP_007301770.1| - 1.2 9.2 5.5 1.7 8.8 0.2 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF772 PF05598.6 gi|435849830|ref|YP_007301771.1| - 2.9e-18 65.5 0.0 6.3e-18 64.4 0.0 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|435849830|ref|YP_007301771.1| - 1.1e-13 51.2 0.5 3.8e-12 46.1 0.4 2.1 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|435849830|ref|YP_007301771.1| - 1.2e-05 25.0 0.1 2.6e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|435849830|ref|YP_007301771.1| - 0.00041 19.9 0.1 0.00069 19.2 0.1 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.1 gi|435849830|ref|YP_007301771.1| - 0.0061 16.5 0.1 0.013 15.4 0.1 1.5 1 0 0 1 1 1 1 Transposase DDE domain FGE-sulfatase PF03781.11 gi|435849831|ref|YP_007301772.1| - 1.1e-54 185.5 8.4 8.1e-54 182.7 5.8 2.0 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 DUF4246 PF14033.1 gi|435849832|ref|YP_007301773.1| - 0.031 12.8 0.1 0.033 12.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4246) Trehalose_PPase PF02358.11 gi|435849832|ref|YP_007301773.1| - 0.039 12.8 0.0 0.044 12.6 0.0 1.1 1 0 0 1 1 1 0 Trehalose-phosphatase Arch_ATPase PF01637.13 gi|435849833|ref|YP_007301774.1| - 4.7e-05 23.1 0.0 7e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_33 PF13671.1 gi|435849833|ref|YP_007301774.1| - 0.001 18.9 0.0 0.0024 17.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|435849833|ref|YP_007301774.1| - 0.001 18.1 0.0 0.075 12.1 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin AAA_14 PF13173.1 gi|435849833|ref|YP_007301774.1| - 0.0024 17.7 0.0 0.0057 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|435849833|ref|YP_007301774.1| - 0.01 15.8 3.7 0.016 15.1 2.1 1.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|435849833|ref|YP_007301774.1| - 0.012 15.9 0.0 0.017 15.4 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_13 PF13166.1 gi|435849833|ref|YP_007301774.1| - 0.013 14.0 0.0 0.015 13.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|435849833|ref|YP_007301774.1| - 0.017 14.6 0.0 0.036 13.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Miro PF08477.8 gi|435849833|ref|YP_007301774.1| - 0.021 15.3 0.0 0.035 14.5 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_18 PF13238.1 gi|435849833|ref|YP_007301774.1| - 0.028 14.7 0.3 0.073 13.3 0.1 1.8 2 1 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|435849833|ref|YP_007301774.1| - 0.03 13.8 0.0 0.045 13.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_23 PF13476.1 gi|435849833|ref|YP_007301774.1| - 0.035 14.4 0.0 0.067 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|435849833|ref|YP_007301774.1| - 0.035 14.2 0.0 0.063 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|435849833|ref|YP_007301774.1| - 0.037 13.4 0.0 0.06 12.7 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|435849833|ref|YP_007301774.1| - 0.085 13.6 0.0 0.14 12.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|435849833|ref|YP_007301774.1| - 0.088 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|435849833|ref|YP_007301774.1| - 0.14 11.8 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|435849833|ref|YP_007301774.1| - 0.14 11.3 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_24 PF13479.1 gi|435849833|ref|YP_007301774.1| - 0.15 11.6 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain Arf PF00025.16 gi|435849833|ref|YP_007301774.1| - 0.16 11.2 0.0 0.31 10.2 0.0 1.5 1 0 0 1 1 1 0 ADP-ribosylation factor family LVIVD PF08309.6 gi|435849834|ref|YP_007301775.1| - 7.3e-37 124.0 35.3 3e-11 42.0 0.5 8.0 7 0 0 7 7 7 7 LVIVD repeat LGFP PF08310.6 gi|435849834|ref|YP_007301775.1| - 2.1e-20 72.0 11.1 1.3e-06 27.9 0.0 7.6 7 1 0 7 7 7 6 LGFP repeat Spore_YtfJ PF09579.5 gi|435849834|ref|YP_007301775.1| - 0.015 15.1 3.0 0.051 13.4 2.1 2.0 1 0 0 1 1 1 0 Sporulation protein YtfJ (Spore_YtfJ) PQQ_3 PF13570.1 gi|435849834|ref|YP_007301775.1| - 0.1 12.8 7.6 2.4 8.5 0.1 4.5 4 0 0 4 4 4 0 PQQ-like domain DUF3945 PF13101.1 gi|435849834|ref|YP_007301775.1| - 0.13 11.5 0.1 0.38 10.0 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3945) TPR_11 PF13414.1 gi|435849835|ref|YP_007301776.1| - 5.5e-37 125.2 7.8 3.1e-18 65.1 0.6 3.9 2 1 2 4 4 4 4 TPR repeat TPR_1 PF00515.23 gi|435849835|ref|YP_007301776.1| - 5.8e-35 117.4 2.8 1.3e-09 37.2 0.0 5.3 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|435849835|ref|YP_007301776.1| - 6.2e-29 97.7 2.9 2.2e-09 36.7 0.0 4.8 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|435849835|ref|YP_007301776.1| - 2.5e-27 92.5 6.4 2e-08 33.5 0.0 5.8 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|435849835|ref|YP_007301776.1| - 1.6e-21 76.3 0.0 1.9e-07 31.5 0.1 3.3 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|435849835|ref|YP_007301776.1| - 4.8e-19 68.0 1.3 1.4e-08 34.5 0.0 3.3 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|435849835|ref|YP_007301776.1| - 5.5e-19 66.4 7.1 4.5e-06 26.0 0.0 5.5 5 1 0 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|435849835|ref|YP_007301776.1| - 4e-18 65.5 0.3 9.1e-09 35.5 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|435849835|ref|YP_007301776.1| - 8.5e-18 63.2 0.0 8.4e-05 22.8 0.0 4.4 1 1 4 5 5 5 4 Tetratricopeptide repeat PPTA PF01239.17 gi|435849835|ref|YP_007301776.1| - 3.1e-11 42.0 0.0 0.0069 15.6 0.0 3.6 3 0 0 3 3 3 3 Protein prenyltransferase alpha subunit repeat TPR_6 PF13174.1 gi|435849835|ref|YP_007301776.1| - 1.4e-10 40.9 0.0 0.00012 22.2 0.0 4.9 5 0 0 5 5 5 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|435849835|ref|YP_007301776.1| - 5.8e-10 39.1 0.0 0.00048 20.1 0.0 2.4 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|435849835|ref|YP_007301776.1| - 1e-08 34.8 0.0 0.0079 16.0 0.0 2.8 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|435849835|ref|YP_007301776.1| - 1.3e-08 33.9 0.8 0.1 12.4 0.0 4.9 5 0 0 5 5 5 1 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|435849835|ref|YP_007301776.1| - 3e-06 27.4 0.1 0.093 12.9 0.0 2.4 1 1 1 2 2 2 2 Alkyl sulfatase dimerisation NARP1 PF12569.3 gi|435849835|ref|YP_007301776.1| - 7.2e-06 25.0 0.3 0.0038 16.0 0.0 2.4 1 1 2 3 3 3 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|435849835|ref|YP_007301776.1| - 8.2e-06 25.6 0.0 0.21 11.5 0.0 3.0 2 1 0 2 2 2 2 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.1 gi|435849835|ref|YP_007301776.1| - 0.0021 17.9 0.1 2.4 8.1 0.0 3.6 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|435849835|ref|YP_007301776.1| - 0.0021 18.2 0.0 1.8 9.2 0.0 2.9 3 0 0 3 3 2 1 Tetratricopeptide repeat Apc5 PF12862.2 gi|435849835|ref|YP_007301776.1| - 0.0033 17.2 0.1 1.2 9.0 0.0 3.1 2 1 1 3 3 3 1 Anaphase-promoting complex subunit 5 RPN7 PF10602.4 gi|435849835|ref|YP_007301776.1| - 0.0082 15.5 0.6 0.051 12.9 0.1 2.4 2 2 1 3 3 3 1 26S proteasome subunit RPN7 FAT PF02259.18 gi|435849835|ref|YP_007301776.1| - 0.0086 15.0 1.4 0.2 10.6 1.0 2.6 1 1 0 1 1 1 1 FAT domain TPR_15 PF13429.1 gi|435849835|ref|YP_007301776.1| - 0.0089 15.1 0.2 4 6.4 0.0 2.5 1 1 0 2 2 2 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|435849835|ref|YP_007301776.1| - 0.018 15.1 0.1 1.3 9.1 0.0 2.7 2 1 1 3 3 3 0 Tetratricopeptide repeat BTAD PF03704.12 gi|435849835|ref|YP_007301776.1| - 0.024 14.9 0.0 0.86 9.8 0.0 2.5 1 1 2 3 3 3 0 Bacterial transcriptional activator domain TOM20_plant PF06552.7 gi|435849835|ref|YP_007301776.1| - 0.027 14.0 1.9 0.35 10.4 0.1 2.9 1 1 2 3 3 3 0 Plant specific mitochondrial import receptor subunit TOM20 TPR_21 PF09976.4 gi|435849835|ref|YP_007301776.1| - 0.036 14.0 0.7 2.9 7.8 0.0 3.0 2 1 0 2 2 2 0 Tetratricopeptide repeat ChAPs PF09295.5 gi|435849835|ref|YP_007301776.1| - 0.081 11.6 0.2 0.56 8.9 0.0 1.9 2 0 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) DUF357 PF04010.8 gi|435849835|ref|YP_007301776.1| - 0.1 12.2 1.3 0.22 11.2 0.1 2.1 2 1 1 3 3 2 0 Protein of unknown function (DUF357) Oxidored_q5_N PF01059.12 gi|435849836|ref|YP_007301777.1| - 0.036 13.9 4.4 0.06 13.2 3.1 1.4 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus CDC48_N PF02359.13 gi|435849836|ref|YP_007301777.1| - 0.044 13.7 0.0 30 4.6 0.0 3.2 3 0 0 3 3 3 0 Cell division protein 48 (CDC48), N-terminal domain AAA_15 PF13175.1 gi|435849837|ref|YP_007301778.1| - 1.4e-23 83.6 33.3 1.4e-23 83.6 23.1 3.5 2 2 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.1 gi|435849837|ref|YP_007301778.1| - 1.4e-16 61.3 29.1 8.2e-13 48.9 7.6 4.0 1 1 2 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|435849837|ref|YP_007301778.1| - 1.4e-12 48.3 9.5 1.4e-12 48.3 6.6 3.0 2 1 0 3 3 3 1 AAA domain DUF2813 PF11398.3 gi|435849837|ref|YP_007301778.1| - 1.8e-10 40.4 1.7 1.2e-07 31.1 0.1 2.8 3 0 0 3 3 3 2 Protein of unknown function (DUF2813) SMC_N PF02463.14 gi|435849837|ref|YP_007301778.1| - 4.1e-10 39.2 4.9 7.6e-10 38.3 0.1 2.8 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|435849837|ref|YP_007301778.1| - 0.00014 21.3 0.0 0.00053 19.4 0.0 2.0 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|435849837|ref|YP_007301778.1| - 0.06 13.2 0.1 0.6 10.0 0.0 2.7 3 0 0 3 3 3 0 50S ribosome-binding GTPase HEAT_2 PF13646.1 gi|435849838|ref|YP_007301779.1| - 3.2e-14 52.9 0.1 6.2e-05 23.1 0.0 5.3 5 1 0 5 5 5 3 HEAT repeats HEAT PF02985.17 gi|435849838|ref|YP_007301779.1| - 9.3e-05 22.1 0.4 23 5.4 0.0 6.8 7 0 0 7 7 7 1 HEAT repeat HEAT_EZ PF13513.1 gi|435849838|ref|YP_007301779.1| - 0.0017 18.7 0.0 12 6.4 0.0 4.8 3 2 2 5 5 5 1 HEAT-like repeat MCPsignal PF00015.16 gi|435849838|ref|YP_007301779.1| - 1.3 8.5 8.2 0.82 9.1 3.4 2.2 2 0 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.6 gi|435849838|ref|YP_007301779.1| - 1.5 8.7 11.2 1.4 8.8 3.8 3.3 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) ComZ PF10815.3 gi|435849839|ref|YP_007301780.1| - 0.07 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 ComZ RVT_1 PF00078.22 gi|435849840|ref|YP_007301781.1| - 1.7e-44 151.7 0.1 3.3e-44 150.8 0.1 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) RVT_N PF13655.1 gi|435849840|ref|YP_007301781.1| - 3e-31 107.3 7.7 7.3e-31 106.0 5.3 1.7 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase GIIM PF08388.6 gi|435849840|ref|YP_007301781.1| - 1.5e-23 82.3 5.6 5.9e-23 80.4 3.9 2.1 1 0 0 1 1 1 1 Group II intron, maturase-specific domain U5_2-snRNA_bdg PF10597.4 gi|435849840|ref|YP_007301781.1| - 0.012 15.2 0.1 0.031 13.8 0.1 1.7 1 0 0 1 1 1 0 U5-snRNA binding site 2 of PrP8 Poxvirus_B22R_N PF13169.1 gi|435849841|ref|YP_007301782.1| - 0.027 14.6 0.0 0.03 14.5 0.0 1.1 1 0 0 1 1 1 0 Poxvirus B22R protein N-terminal Disaggr_repeat PF06848.6 gi|435849842|ref|YP_007301783.1| - 5.8e-230 755.8 23.5 2.9e-77 258.2 1.8 3.5 3 0 0 3 3 3 3 Disaggregatase related repeat PKD PF00801.15 gi|435849842|ref|YP_007301783.1| - 3.4e-70 231.7 65.2 3e-17 62.1 5.6 8.0 7 0 0 7 7 7 6 PKD domain NHL PF01436.16 gi|435849842|ref|YP_007301783.1| - 3.5e-18 64.5 16.9 1e-06 28.3 0.1 6.2 5 0 0 5 5 5 4 NHL repeat TGFb_propeptide PF00688.13 gi|435849842|ref|YP_007301783.1| - 3.6e-13 49.3 0.0 1 8.5 0.0 6.3 6 0 0 6 6 6 5 TGF-beta propeptide Abhydrolase_6 PF12697.2 gi|435849842|ref|YP_007301783.1| - 5e-10 39.6 0.0 8.7e-10 38.8 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|435849842|ref|YP_007301783.1| - 1.5e-09 37.7 0.0 3.9e-09 36.4 0.0 1.8 1 0 0 1 1 1 1 Alpha/beta hydrolase family SBBP PF06739.6 gi|435849842|ref|YP_007301783.1| - 4.8e-09 35.8 32.5 0.049 13.4 0.4 8.1 7 0 0 7 7 7 5 Beta-propeller repeat DUF4625 PF15418.1 gi|435849842|ref|YP_007301783.1| - 2.1e-05 24.6 6.0 5.2 7.1 0.0 5.6 5 1 0 5 5 5 2 Domain of unknown function (DUF4625) Y_Y_Y PF07495.8 gi|435849842|ref|YP_007301783.1| - 0.0021 17.7 17.0 1 9.1 0.9 6.2 6 0 0 6 6 6 2 Y_Y_Y domain Big_3_4 PF13754.1 gi|435849842|ref|YP_007301783.1| - 0.013 15.8 0.7 0.013 15.8 0.5 11.3 10 3 2 12 12 11 0 Bacterial Ig-like domain (group 3) DUF676 PF05057.9 gi|435849842|ref|YP_007301783.1| - 0.059 12.6 0.2 0.23 10.7 0.1 1.8 1 1 0 1 1 1 0 Putative serine esterase (DUF676) Hydrolase_4 PF12146.3 gi|435849842|ref|YP_007301783.1| - 0.059 13.2 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 Putative lysophospholipase SoxZ PF08770.6 gi|435849842|ref|YP_007301783.1| - 0.067 12.6 5.8 3.7 7.0 0.0 4.9 5 0 0 5 5 5 0 Sulphur oxidation protein SoxZ He_PIG PF05345.7 gi|435849842|ref|YP_007301783.1| - 0.95 9.5 45.9 0.34 10.9 0.6 8.2 7 0 0 7 7 6 0 Putative Ig domain Gmad2 PF10648.4 gi|435849842|ref|YP_007301783.1| - 6.5 7.0 18.3 5.4 7.2 0.4 4.5 5 0 0 5 5 3 0 Immunoglobulin-like domain of bacterial spore germination DUF262 PF03235.9 gi|435849843|ref|YP_007301784.1| - 8.1e-40 137.1 9.4 8.1e-40 137.1 6.5 2.7 2 1 0 2 2 2 1 Protein of unknown function DUF262 DUF1524 PF07510.6 gi|435849843|ref|YP_007301784.1| - 1.1e-22 80.3 0.1 1.1e-22 80.3 0.1 2.6 4 0 0 4 4 4 1 Protein of unknown function (DUF1524) HTH_24 PF13412.1 gi|435849844|ref|YP_007301785.1| - 2.6e-21 74.7 0.4 1.2e-10 40.6 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|435849844|ref|YP_007301785.1| - 1.2e-15 57.0 0.0 5.9e-07 29.2 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|435849844|ref|YP_007301785.1| - 1.1e-12 47.3 0.0 2.7e-05 23.7 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|435849844|ref|YP_007301785.1| - 5.5e-12 45.1 0.0 1.3e-06 27.9 0.0 2.5 3 0 0 3 3 2 2 MarR family HTH_11 PF08279.7 gi|435849844|ref|YP_007301785.1| - 9.7e-12 44.3 0.2 8.2e-06 25.3 0.0 2.3 2 0 0 2 2 2 2 HTH domain HTH_34 PF13601.1 gi|435849844|ref|YP_007301785.1| - 4.6e-08 32.9 0.0 0.011 15.7 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain MarR PF01047.17 gi|435849844|ref|YP_007301785.1| - 6.4e-08 32.1 0.0 2.3e-05 24.0 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|435849844|ref|YP_007301785.1| - 8.9e-08 31.6 0.0 4.9e-05 22.8 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|435849844|ref|YP_007301785.1| - 2.8e-06 27.1 0.0 6.8e-06 25.9 0.0 1.7 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|435849844|ref|YP_007301785.1| - 3.8e-06 26.5 0.0 0.00079 19.0 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|435849844|ref|YP_007301785.1| - 4.6e-06 26.1 0.0 0.00035 20.1 0.0 2.7 2 1 0 2 2 2 1 Homeodomain-like domain GerE PF00196.14 gi|435849844|ref|YP_007301785.1| - 5.1e-06 25.7 0.1 0.00029 20.1 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_Mga PF08280.6 gi|435849844|ref|YP_007301785.1| - 1.2e-05 24.9 0.0 0.00037 20.1 0.0 2.3 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_40 PF14493.1 gi|435849844|ref|YP_007301785.1| - 1.4e-05 25.2 0.0 0.002 18.3 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|435849844|ref|YP_007301785.1| - 2.4e-05 24.3 0.4 0.0037 17.3 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|435849844|ref|YP_007301785.1| - 0.00024 21.0 0.1 0.0079 16.1 0.0 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|435849844|ref|YP_007301785.1| - 0.001 18.5 0.0 0.0051 16.3 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|435849844|ref|YP_007301785.1| - 0.0015 17.9 0.2 0.025 14.0 0.0 2.5 2 1 1 3 3 3 1 Sigma-70, region 4 TFIIE_alpha PF02002.12 gi|435849844|ref|YP_007301785.1| - 0.0027 17.2 0.1 0.73 9.3 0.0 2.2 1 1 1 2 2 2 1 TFIIE alpha subunit HTH_38 PF13936.1 gi|435849844|ref|YP_007301785.1| - 0.0044 16.5 0.1 0.018 14.6 0.0 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|435849844|ref|YP_007301785.1| - 0.0056 16.4 0.0 0.014 15.1 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.13 gi|435849844|ref|YP_007301785.1| - 0.0065 16.4 0.0 4.5 7.4 0.0 2.3 2 0 0 2 2 2 1 Transposase HTH_10 PF04967.7 gi|435849844|ref|YP_007301785.1| - 0.017 14.7 0.0 0.035 13.6 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain RPA_C PF08784.6 gi|435849844|ref|YP_007301785.1| - 0.021 15.2 0.0 5 7.6 0.0 2.2 2 0 0 2 2 2 0 Replication protein A C terminal HTH_29 PF13551.1 gi|435849844|ref|YP_007301785.1| - 0.022 14.8 0.0 1.2 9.3 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix Penicillinase_R PF03965.11 gi|435849844|ref|YP_007301785.1| - 0.028 14.4 0.0 0.32 11.1 0.0 2.2 2 0 0 2 2 2 0 Penicillinase repressor Sigma70_r4 PF04545.11 gi|435849844|ref|YP_007301785.1| - 0.031 13.6 0.0 0.16 11.2 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_41 PF14502.1 gi|435849844|ref|YP_007301785.1| - 0.031 13.8 0.0 3 7.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain RP-C PF03428.8 gi|435849844|ref|YP_007301785.1| - 0.1 12.0 0.0 0.97 8.8 0.0 2.0 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_3 PF01381.17 gi|435849844|ref|YP_007301785.1| - 0.12 12.2 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix EAP30 PF04157.11 gi|435849844|ref|YP_007301785.1| - 0.13 11.3 0.0 7.6 5.6 0.0 2.1 2 0 0 2 2 2 0 EAP30/Vps36 family DDRGK PF09756.4 gi|435849844|ref|YP_007301785.1| - 0.17 11.3 0.5 0.7 9.2 0.4 1.7 2 0 0 2 2 2 0 DDRGK domain PsbQ PF05757.6 gi|435849844|ref|YP_007301785.1| - 0.17 11.2 0.1 0.25 10.7 0.0 1.2 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) Zn_dep_PLPC PF00882.13 gi|435849847|ref|YP_007301788.1| - 2.6e-07 30.4 0.4 2.6e-07 30.4 0.3 1.6 2 0 0 2 2 2 1 Zinc dependent phospholipase C DUF692 PF05114.8 gi|435849848|ref|YP_007301789.1| - 0.0037 16.2 0.0 0.0059 15.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF692) tRNA_anti-codon PF01336.20 gi|435849849|ref|YP_007301790.1| - 3.5e-21 74.8 12.1 1.8e-06 27.6 0.2 4.1 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|435849849|ref|YP_007301790.1| - 0.0062 16.2 1.0 11 5.7 0.0 3.6 2 1 1 3 3 3 2 Replication factor-A C terminal domain DDE_Tnp_ISL3 PF01610.12 gi|435849850|ref|YP_007301791.1| - 3.1e-66 223.4 7.7 4.4e-66 223.0 5.4 1.2 1 0 0 1 1 1 1 Transposase zf-ISL3 PF14690.1 gi|435849850|ref|YP_007301791.1| - 1.5e-14 53.7 2.5 3.1e-14 52.7 1.8 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HTH_Tnp_ISL3 PF13542.1 gi|435849850|ref|YP_007301791.1| - 5.2e-12 44.7 0.1 1e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.1 gi|435849850|ref|YP_007301791.1| - 0.0012 18.3 0.2 0.0062 16.1 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain z-alpha PF02295.12 gi|435849850|ref|YP_007301791.1| - 0.2 11.4 1.4 1.1 9.0 0.0 2.6 3 0 0 3 3 3 0 Adenosine deaminase z-alpha domain Tcp10_C PF07202.8 gi|435849851|ref|YP_007301792.1| - 0.064 12.8 0.4 0.094 12.2 0.3 1.2 1 0 0 1 1 1 0 T-complex protein 10 C-terminus HSP20 PF00011.16 gi|435849851|ref|YP_007301792.1| - 0.1 12.4 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Hsp20/alpha crystallin family OrfB_Zn_ribbon PF07282.6 gi|435849852|ref|YP_007301793.1| - 1.9e-23 81.8 0.9 4.8e-23 80.5 0.6 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|435849852|ref|YP_007301793.1| - 1.1e-15 57.6 0.5 1.7e-15 57.0 0.3 1.4 1 1 0 1 1 1 1 Probable transposase HSP20 PF00011.16 gi|435849855|ref|YP_007301796.1| - 8.6e-05 22.3 0.1 0.002 17.9 0.1 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|435849855|ref|YP_007301796.1| - 0.0019 18.7 0.2 0.0038 17.7 0.1 1.5 1 0 0 1 1 1 1 CS domain DUF1610 PF07754.6 gi|435849856|ref|YP_007301797.1| - 0.02 14.9 0.3 0.042 13.9 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) Oest_recep PF02159.10 gi|435849856|ref|YP_007301797.1| - 0.04 14.0 0.0 0.062 13.4 0.0 1.2 1 0 0 1 1 1 0 Oestrogen receptor UPF0547 PF10571.4 gi|435849856|ref|YP_007301797.1| - 0.057 13.1 0.3 0.17 11.5 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HD PF01966.17 gi|435849857|ref|YP_007301798.1| - 7.7e-05 22.6 0.0 0.00013 21.9 0.0 1.4 1 1 0 1 1 1 1 HD domain Ins_beta PF03488.9 gi|435849860|ref|YP_007301801.1| - 0.094 12.5 0.4 0.094 12.5 0.3 2.5 2 1 0 2 2 2 0 Nematode insulin-related peptide beta type COPR5 PF15340.1 gi|435849860|ref|YP_007301801.1| - 0.18 12.1 0.6 0.21 11.9 0.4 1.1 1 0 0 1 1 1 0 Cooperator of PRMT5 family FIVAR PF07554.8 gi|435849862|ref|YP_007301803.1| - 3.8e-11 42.9 43.1 9.5e-06 25.7 3.0 5.9 5 1 0 5 5 5 3 Uncharacterised Sugar-binding Domain fn3 PF00041.16 gi|435849862|ref|YP_007301803.1| - 0.00097 19.2 13.5 0.11 12.5 0.5 3.9 2 1 0 2 2 2 2 Fibronectin type III domain CAMP_factor PF07373.6 gi|435849862|ref|YP_007301803.1| - 0.007 15.8 13.8 0.1 12.0 0.5 3.5 1 1 1 3 3 3 3 CAMP factor (Cfa) DUF4398 PF14346.1 gi|435849862|ref|YP_007301803.1| - 1.2 9.2 4.6 20 5.3 0.1 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4398) DUF3021 PF11457.3 gi|435849863|ref|YP_007301804.1| - 0.0049 16.7 0.5 0.0055 16.5 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3021) 7tm_7 PF08395.7 gi|435849863|ref|YP_007301804.1| - 0.016 14.2 0.2 0.018 14.0 0.1 1.0 1 0 0 1 1 1 0 7tm Chemosensory receptor FtsX PF02687.16 gi|435849863|ref|YP_007301804.1| - 0.16 11.7 3.9 0.2 11.4 2.7 1.0 1 0 0 1 1 1 0 FtsX-like permease family Tetraspannin PF00335.15 gi|435849863|ref|YP_007301804.1| - 0.2 10.9 4.0 0.24 10.6 2.7 1.0 1 0 0 1 1 1 0 Tetraspanin family TF_Zn_Ribbon PF08271.7 gi|435849864|ref|YP_007301805.1| - 0.0007 18.8 3.9 0.077 12.3 0.1 2.7 3 0 0 3 3 2 2 TFIIB zinc-binding Sgf11 PF08209.6 gi|435849864|ref|YP_007301805.1| - 0.0029 16.8 2.3 0.078 12.3 0.1 2.3 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.5 gi|435849864|ref|YP_007301805.1| - 0.0069 16.3 1.1 0.56 10.2 0.0 2.5 2 0 0 2 2 2 1 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|435849864|ref|YP_007301805.1| - 0.0072 15.4 0.4 0.3 10.3 0.0 2.4 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|435849864|ref|YP_007301805.1| - 0.036 13.8 2.9 0.099 12.4 2.0 1.8 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|435849864|ref|YP_007301805.1| - 0.06 13.1 0.5 10 5.9 0.1 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|435849864|ref|YP_007301805.1| - 0.061 13.1 0.5 5.1 6.9 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbons NOB1_Zn_bind PF08772.6 gi|435849864|ref|YP_007301805.1| - 0.074 12.8 0.8 4.1 7.2 0.2 2.2 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|435849864|ref|YP_007301805.1| - 0.08 12.4 2.9 0.46 10.0 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF2296 PF10058.4 gi|435849864|ref|YP_007301805.1| - 0.081 12.6 6.1 3.5 7.4 0.1 3.2 3 0 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) DUF2508 PF10704.4 gi|435849864|ref|YP_007301805.1| - 0.084 13.0 0.2 0.29 11.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2508) Thioredoxin_3 PF13192.1 gi|435849864|ref|YP_007301805.1| - 0.098 12.4 0.8 2.2 8.1 0.0 2.3 1 1 1 2 2 2 0 Thioredoxin domain zf-ISL3 PF14690.1 gi|435849864|ref|YP_007301805.1| - 0.1 12.6 0.0 5.1 7.2 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Acetone_carb_G PF08882.6 gi|435849864|ref|YP_007301805.1| - 0.13 12.2 1.4 1.9 8.5 0.0 2.2 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit Nudix_N_2 PF14803.1 gi|435849864|ref|YP_007301805.1| - 0.2 11.3 1.0 2.6 7.8 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal Rubredoxin PF00301.15 gi|435849864|ref|YP_007301805.1| - 0.26 11.1 1.9 14 5.6 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin Arc_trans_TRASH PF08394.5 gi|435849864|ref|YP_007301805.1| - 0.44 10.7 2.7 19 5.5 0.4 2.4 2 0 0 2 2 2 0 Archaeal TRASH domain zf-Di19 PF05605.7 gi|435849864|ref|YP_007301805.1| - 0.67 10.1 3.8 13 5.9 0.0 2.7 2 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Gin PF10764.4 gi|435849864|ref|YP_007301805.1| - 0.78 9.5 4.5 17 5.2 0.8 2.8 2 1 0 2 2 2 0 Inhibitor of sigma-G Gin UPF0547 PF10571.4 gi|435849864|ref|YP_007301805.1| - 1.9 8.2 7.0 6.4 6.5 0.4 2.4 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|435849864|ref|YP_007301805.1| - 2 8.2 7.2 8 6.3 0.1 2.6 2 1 0 2 2 2 0 PhnA Zinc-Ribbon DUF2197 PF09963.4 gi|435849864|ref|YP_007301805.1| - 3.6 7.6 8.3 11 6.0 0.0 3.1 3 1 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2197) zf-B_box PF00643.19 gi|435849864|ref|YP_007301805.1| - 3.7 7.5 6.7 14 5.6 0.1 2.4 3 0 0 3 3 2 0 B-box zinc finger TFIIS_C PF01096.13 gi|435849864|ref|YP_007301805.1| - 5.4 6.7 7.7 4.8 6.8 1.9 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF4182 PF13790.1 gi|435849864|ref|YP_007301805.1| - 8 6.3 7.7 9 6.1 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4182) zf-Mss51 PF13824.1 gi|435849864|ref|YP_007301805.1| - 8.8 6.2 6.8 36 4.3 0.0 2.9 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 CHZ PF09649.5 gi|435849865|ref|YP_007301806.1| - 0.12 11.6 0.4 0.18 11.0 0.3 1.3 1 0 0 1 1 1 0 Histone chaperone domain CHZ Prok-RING_1 PF14446.1 gi|435849865|ref|YP_007301806.1| - 0.32 10.7 0.4 0.32 10.7 0.2 1.7 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 HEAT_2 PF13646.1 gi|435849866|ref|YP_007301807.1| - 5e-14 52.3 0.0 3.2e-06 27.3 0.0 2.5 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.11 gi|435849866|ref|YP_007301807.1| - 6.5e-05 23.0 0.4 4.3 8.0 0.0 3.5 3 0 0 3 3 3 2 PBS lyase HEAT-like repeat SNF2_N PF00176.18 gi|435849868|ref|YP_007301809.1| - 3.1e-13 49.1 1.3 1.7e-12 46.7 0.9 2.0 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|435849868|ref|YP_007301809.1| - 3.4e-08 33.2 0.0 9.2e-08 31.8 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain N6_Mtase PF02384.11 gi|435849868|ref|YP_007301809.1| - 5.7e-07 28.9 1.1 8.7e-07 28.3 0.0 1.8 2 0 0 2 2 2 1 N-6 DNA Methylase ResIII PF04851.10 gi|435849868|ref|YP_007301809.1| - 5.3e-05 23.1 0.1 0.00019 21.3 0.1 2.0 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Methyltransf_26 PF13659.1 gi|435849868|ref|YP_007301809.1| - 0.0066 16.4 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain AAA_25 PF13481.1 gi|435849868|ref|YP_007301809.1| - 0.11 11.9 0.0 0.59 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain HEAT_2 PF13646.1 gi|435849869|ref|YP_007301810.1| - 1.4e-18 66.9 0.0 3.2e-07 30.5 0.0 5.5 2 1 3 6 6 6 5 HEAT repeats HEAT PF02985.17 gi|435849869|ref|YP_007301810.1| - 6e-15 53.9 0.0 0.11 12.6 0.0 7.7 8 0 0 8 8 8 4 HEAT repeat DUF4116 PF13475.1 gi|435849869|ref|YP_007301810.1| - 2.7e-10 39.5 4.5 0.024 14.0 0.0 6.0 5 1 0 5 5 5 3 Domain of unknown function (DUF4116) HEAT_EZ PF13513.1 gi|435849869|ref|YP_007301810.1| - 6.9e-10 39.1 0.0 0.0019 18.6 0.0 4.9 4 1 1 5 5 5 2 HEAT-like repeat NPV_P10 PF05531.7 gi|435849869|ref|YP_007301810.1| - 6.2e-05 23.1 5.3 0.00029 21.0 3.7 2.2 1 0 0 1 1 1 1 Nucleopolyhedrovirus P10 protein Arm PF00514.18 gi|435849869|ref|YP_007301810.1| - 0.00024 20.7 0.6 0.88 9.4 0.0 4.6 5 0 0 5 5 5 1 Armadillo/beta-catenin-like repeat Ribosomal_S30AE PF02482.14 gi|435849869|ref|YP_007301810.1| - 0.0035 17.7 2.0 0.0084 16.5 0.2 2.4 2 0 0 2 2 2 1 Sigma 54 modulation protein / S30EA ribosomal protein Baculo_PEP_C PF04513.7 gi|435849869|ref|YP_007301810.1| - 0.03 14.1 2.8 0.049 13.4 0.2 2.3 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2346 PF09803.4 gi|435849869|ref|YP_007301810.1| - 0.11 12.3 1.4 0.75 9.6 0.1 2.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2346) COG5 PF10392.4 gi|435849869|ref|YP_007301810.1| - 0.38 10.6 6.6 0.12 12.2 2.0 2.0 2 0 0 2 2 2 0 Golgi transport complex subunit 5 Seryl_tRNA_N PF02403.17 gi|435849869|ref|YP_007301810.1| - 0.96 9.4 17.5 0.15 12.0 1.7 3.5 3 1 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain NRDD PF13597.1 gi|435849871|ref|YP_007301812.1| - 2.3e-153 511.1 0.6 2.8e-153 510.8 0.4 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.11 gi|435849871|ref|YP_007301812.1| - 0.0019 18.6 0.0 0.0044 17.4 0.0 1.6 1 0 0 1 1 1 1 ATP cone domain AAA_5 PF07728.9 gi|435849872|ref|YP_007301813.1| - 5.8e-05 22.8 0.0 0.0003 20.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|435849872|ref|YP_007301813.1| - 9.6e-05 22.0 2.3 0.00046 19.7 0.1 3.0 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) Xpo1 PF08389.7 gi|435849873|ref|YP_007301814.1| - 0.01 15.7 0.8 0.023 14.6 0.5 1.6 1 0 0 1 1 1 0 Exportin 1-like protein DUF3826 PF12875.2 gi|435849873|ref|YP_007301814.1| - 0.23 11.1 6.9 1.1 8.8 0.0 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3826) ScpA_ScpB PF02616.9 gi|435849875|ref|YP_007301816.1| - 2.5e-24 86.1 7.1 2.1e-23 83.1 3.2 2.4 2 1 0 2 2 2 1 ScpA/B protein Rad21_Rec8 PF04824.11 gi|435849875|ref|YP_007301816.1| - 0.014 14.5 0.0 0.044 12.9 0.0 1.8 1 0 0 1 1 1 0 Conserved region of Rad21 / Rec8 like protein HEAT_2 PF13646.1 gi|435849877|ref|YP_007301818.1| - 1.2e-13 51.1 0.0 7.3e-05 22.9 0.0 3.5 2 1 3 5 5 5 4 HEAT repeats HEAT PF02985.17 gi|435849877|ref|YP_007301818.1| - 3.2e-08 32.9 0.0 13 6.1 0.0 5.7 5 0 0 5 5 5 3 HEAT repeat HEAT_EZ PF13513.1 gi|435849877|ref|YP_007301818.1| - 0.00079 19.8 0.0 1.2 9.7 0.0 4.0 4 2 2 6 6 6 1 HEAT-like repeat DUF16 PF01519.11 gi|435849877|ref|YP_007301818.1| - 0.41 10.8 10.3 0.027 14.6 2.0 2.7 1 1 2 3 3 3 0 Protein of unknown function DUF16 DUF2951 PF11166.3 gi|435849877|ref|YP_007301818.1| - 6.4 6.6 11.6 0.2 11.4 2.3 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2951) DUF2934 PF11154.3 gi|435849878|ref|YP_007301819.1| - 1.4e-06 27.4 2.7 0.0035 16.6 0.6 3.9 3 2 0 3 3 3 2 Protein of unknown function (DUF2934) Foamy_virus_ENV PF03408.9 gi|435849878|ref|YP_007301819.1| - 0.003 15.1 1.1 0.0034 15.0 0.8 1.1 1 0 0 1 1 1 1 Foamy virus envelope protein ChaC PF04752.7 gi|435849879|ref|YP_007301820.1| - 0.03 14.3 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 ChaC-like protein Cys_rich_VLP PF14194.1 gi|435849880|ref|YP_007301821.1| - 0.21 11.3 1.3 16 5.3 0.1 2.4 1 1 1 2 2 2 0 Cysteine-rich VLP SPASM PF13186.1 gi|435849880|ref|YP_007301821.1| - 0.75 10.1 3.0 1.5 9.2 0.6 2.7 2 1 1 3 3 3 0 Iron-sulfur cluster-binding domain DNA_primase_S PF01896.14 gi|435849882|ref|YP_007301823.1| - 0.017 14.9 0.0 0.2 11.4 0.0 2.3 1 1 0 1 1 1 0 Eukaryotic and archaeal DNA primase small subunit VWA PF00092.23 gi|435849884|ref|YP_007301825.1| - 4e-10 39.6 0.9 8.4e-10 38.6 0.6 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.1 gi|435849884|ref|YP_007301825.1| - 3.6e-08 33.7 0.0 8.2e-08 32.5 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF2201 PF09967.4 gi|435849884|ref|YP_007301825.1| - 6.9e-06 26.1 0.0 1.3e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 VWA-like domain (DUF2201) DUF2828 PF11443.3 gi|435849884|ref|YP_007301825.1| - 1.7e-05 23.2 0.7 2.5e-05 22.7 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF2828) VWA_3 PF13768.1 gi|435849884|ref|YP_007301825.1| - 0.00088 18.9 0.0 0.0034 17.0 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain Peptidase_M48 PF01435.13 gi|435849884|ref|YP_007301825.1| - 0.002 17.7 0.0 0.0037 16.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 VWA_CoxE PF05762.9 gi|435849884|ref|YP_007301825.1| - 0.034 13.2 0.0 0.058 12.5 0.0 1.3 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein SPOUT_MTase PF02590.12 gi|435849884|ref|YP_007301825.1| - 0.061 13.0 0.5 0.14 11.8 0.0 1.8 2 0 0 2 2 2 0 Predicted SPOUT methyltransferase OrfB_Zn_ribbon PF07282.6 gi|435849885|ref|YP_007301826.1| - 7.7e-24 83.1 2.4 1.9e-23 81.9 1.7 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|435849885|ref|YP_007301826.1| - 8.4e-15 54.7 0.6 1.5e-14 54.0 0.4 1.4 1 0 0 1 1 1 1 Probable transposase DHH PF01368.15 gi|435849887|ref|YP_007301828.1| - 7.9e-18 64.4 1.2 1.3e-17 63.7 0.8 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|435849887|ref|YP_007301828.1| - 3.6e-12 45.8 0.1 7e-12 44.8 0.1 1.5 1 0 0 1 1 1 1 DHHA1 domain B12-binding PF02310.14 gi|435849887|ref|YP_007301828.1| - 0.0081 16.0 0.1 0.018 14.9 0.1 1.5 1 0 0 1 1 1 1 B12 binding domain SelA PF03841.8 gi|435849887|ref|YP_007301828.1| - 0.028 13.1 0.0 0.046 12.4 0.0 1.3 1 0 0 1 1 1 0 L-seryl-tRNA selenium transferase CDC45 PF02724.9 gi|435849887|ref|YP_007301828.1| - 0.06 11.3 0.0 0.34 8.8 0.0 1.9 2 0 0 2 2 2 0 CDC45-like protein Telomerase_RBD PF12009.3 gi|435849888|ref|YP_007301829.1| - 0.019 14.9 0.2 0.02 14.8 0.2 1.1 1 0 0 1 1 1 0 Telomerase ribonucleoprotein complex - RNA binding domain Cactin_mid PF10312.4 gi|435849888|ref|YP_007301829.1| - 0.027 13.7 0.1 0.032 13.5 0.0 1.1 1 0 0 1 1 1 0 Conserved mid region of cactin DUF4624 PF15417.1 gi|435849888|ref|YP_007301829.1| - 0.045 13.3 0.1 0.05 13.2 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4624) Staphostatin_A PF09022.5 gi|435849889|ref|YP_007301830.1| - 0.00037 20.2 0.1 0.00077 19.2 0.0 1.5 1 0 0 1 1 1 1 Staphostatin A DUF1724 PF08350.5 gi|435849890|ref|YP_007301831.1| - 5e-22 77.1 0.1 2.3e-21 75.0 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_45 PF14947.1 gi|435849890|ref|YP_007301831.1| - 9.5e-05 22.1 1.6 0.00013 21.6 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DEAD PF00270.24 gi|435849891|ref|YP_007301832.1| - 1.4e-31 109.3 0.7 2.8e-30 105.0 0.1 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|435849891|ref|YP_007301832.1| - 2.2e-10 40.2 0.0 6.9e-10 38.6 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|435849891|ref|YP_007301832.1| - 2.1e-06 27.7 0.0 1e-05 25.4 0.0 2.2 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|435849891|ref|YP_007301832.1| - 3.3e-06 27.1 0.0 5.3e-05 23.2 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|435849891|ref|YP_007301832.1| - 0.0019 17.6 0.0 0.0049 16.3 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda DUF2863 PF11062.3 gi|435849892|ref|YP_007301833.1| - 0.11 10.5 0.0 0.17 9.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) DUF1699 PF08004.6 gi|435849893|ref|YP_007301834.1| - 4.8e-28 97.2 1.8 5.5e-28 97.0 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF1951 PF09188.5 gi|435849893|ref|YP_007301834.1| - 0.1 12.5 2.3 0.16 11.8 1.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1951) DUF1400 PF07176.6 gi|435849894|ref|YP_007301835.1| - 0.044 13.6 0.0 0.072 12.9 0.0 1.4 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1400) DUF4065 PF13274.1 gi|435849895|ref|YP_007301836.1| - 0.014 16.1 0.1 0.021 15.4 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4065) MOR2-PAG1_N PF14222.1 gi|435849895|ref|YP_007301836.1| - 0.032 12.9 0.8 0.041 12.5 0.5 1.1 1 0 0 1 1 1 0 Cell morphogenesis N-terminal DNA_pol_B PF00136.16 gi|435849896|ref|YP_007301837.1| - 9.3e-107 357.6 0.4 1.6e-106 356.8 0.3 1.3 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|435849896|ref|YP_007301837.1| - 2.3e-54 184.4 0.0 1e-53 182.3 0.1 2.0 2 1 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|435849896|ref|YP_007301837.1| - 0.0029 17.4 0.1 0.015 15.0 0.0 2.1 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|435849896|ref|YP_007301837.1| - 0.021 14.3 0.0 0.054 13.0 0.0 1.6 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB UBA_3 PF09288.5 gi|435849896|ref|YP_007301837.1| - 0.11 12.1 1.4 1.6 8.3 0.0 3.2 3 0 0 3 3 3 0 Fungal ubiquitin-associated domain NosD PF05048.8 gi|435849897|ref|YP_007301838.1| - 3.9e-70 235.6 115.8 2.3e-32 112.0 22.0 5.0 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|435849897|ref|YP_007301838.1| - 1.6e-50 170.9 128.3 9.7e-18 64.4 20.3 5.4 2 1 4 6 6 6 5 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|435849897|ref|YP_007301838.1| - 0.00047 20.3 72.2 0.016 15.3 6.5 5.3 1 1 2 4 4 4 3 Pectate lyase superfamily protein DVL PF08137.7 gi|435849897|ref|YP_007301838.1| - 1 8.8 3.6 1.8 8.1 2.5 1.4 1 0 0 1 1 1 0 DVL family DUF1699 PF08004.6 gi|435849899|ref|YP_007301840.1| - 5.2e-16 58.3 0.8 6.2e-16 58.1 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF4149 PF13664.1 gi|435849900|ref|YP_007301841.1| - 0.0076 16.2 0.0 0.0076 16.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4149) DUF912 PF06024.7 gi|435849901|ref|YP_007301842.1| - 0.15 12.1 1.3 0.15 12.1 0.9 1.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) ABC2_membrane_2 PF12679.2 gi|435849902|ref|YP_007301843.1| - 0.11 11.3 6.4 0.13 11.1 4.4 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|435849902|ref|YP_007301843.1| - 0.23 10.5 8.8 0.26 10.4 6.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Nop10p PF04135.7 gi|435849903|ref|YP_007301844.1| - 0.76 9.5 3.4 0.49 10.1 0.7 1.9 2 1 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family ABC2_membrane_3 PF12698.2 gi|435849903|ref|YP_007301844.1| - 5.8 5.8 10.7 12 4.7 7.4 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein OrfB_IS605 PF01385.14 gi|435849905|ref|YP_007301846.1| - 3.6e-37 127.9 6.3 8.3e-36 123.4 4.3 2.2 1 1 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|435849905|ref|YP_007301846.1| - 9.6e-22 76.4 0.2 1.9e-21 75.4 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|435849905|ref|YP_007301846.1| - 2.1e-15 55.7 1.1 4.6e-15 54.6 0.8 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Flagellin_N PF00669.15 gi|435849905|ref|YP_007301846.1| - 0.0059 16.4 1.4 0.012 15.4 0.1 2.0 2 0 0 2 2 2 1 Bacterial flagellin N-terminal helical region zf-piccolo PF05715.8 gi|435849905|ref|YP_007301846.1| - 0.012 15.6 0.2 0.029 14.3 0.1 1.6 1 0 0 1 1 1 0 Piccolo Zn-finger Rubredoxin PF00301.15 gi|435849905|ref|YP_007301846.1| - 3.3 7.6 5.8 30 4.5 4.0 2.2 1 1 0 1 1 1 0 Rubredoxin Thioredoxin_3 PF13192.1 gi|435849907|ref|YP_007301848.1| - 0.54 10.0 3.5 16 5.3 0.0 3.5 3 0 0 3 3 3 0 Thioredoxin domain Gp-FAR-1 PF05823.7 gi|435849908|ref|YP_007301849.1| - 0.06 13.2 1.3 1 9.2 0.1 2.3 2 0 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) HEAT_2 PF13646.1 gi|435849909|ref|YP_007301850.1| - 1.3e-57 192.0 4.2 2e-15 56.8 0.0 5.4 1 1 5 6 6 6 5 HEAT repeats HEAT_PBS PF03130.11 gi|435849909|ref|YP_007301850.1| - 2.7e-24 83.1 0.3 0.027 14.9 0.0 8.8 9 0 0 9 9 9 5 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|435849909|ref|YP_007301850.1| - 2.5e-17 61.3 0.1 0.00031 20.5 0.0 7.8 8 0 0 8 8 8 4 HEAT repeat HEAT_EZ PF13513.1 gi|435849909|ref|YP_007301850.1| - 5.7e-16 58.4 2.7 0.01 16.2 0.0 6.0 5 1 0 5 5 5 4 HEAT-like repeat RQC PF09382.5 gi|435849909|ref|YP_007301850.1| - 7e-14 51.4 0.1 4.5e-13 48.8 0.0 2.2 2 0 0 2 2 2 1 RQC domain Arm PF00514.18 gi|435849909|ref|YP_007301850.1| - 1.8e-08 33.9 2.3 0.14 12.0 0.0 4.6 5 0 0 5 5 5 3 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|435849909|ref|YP_007301850.1| - 1.3e-07 30.3 0.1 0.018 13.3 0.0 3.6 1 1 3 4 4 4 3 Adaptin N terminal region Cnd1 PF12717.2 gi|435849909|ref|YP_007301850.1| - 0.001 18.9 0.1 0.19 11.5 0.0 3.5 2 1 2 4 4 4 1 non-SMC mitotic condensation complex subunit 1 Vitellogenin_N PF01347.17 gi|435849909|ref|YP_007301850.1| - 0.034 12.3 0.0 8.2 4.5 0.0 3.4 2 2 1 3 3 3 0 Lipoprotein amino terminal region Peptidase_C13 PF01650.13 gi|435849912|ref|YP_007301853.1| - 9.1e-08 31.7 0.0 1.9e-07 30.6 0.0 1.5 1 1 0 1 1 1 1 Peptidase C13 family Peptidase_C14 PF00656.17 gi|435849912|ref|YP_007301853.1| - 3.7e-06 26.8 0.0 6.1e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Caspase domain EF-hand_5 PF13202.1 gi|435849912|ref|YP_007301853.1| - 0.14 11.5 0.1 0.49 9.8 0.0 2.0 2 0 0 2 2 2 0 EF hand CbiA PF01656.18 gi|435849914|ref|YP_007301855.1| - 1.6e-26 92.9 0.2 1.9e-26 92.6 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|435849914|ref|YP_007301855.1| - 4.6e-12 45.5 0.0 2e-11 43.4 0.0 1.8 1 1 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|435849914|ref|YP_007301855.1| - 4e-10 39.8 0.1 6.2e-10 39.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|435849914|ref|YP_007301855.1| - 1.9e-07 30.4 0.7 7.1e-07 28.5 0.5 1.9 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|435849914|ref|YP_007301855.1| - 3.5e-07 29.7 0.6 1.1e-05 24.7 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|435849914|ref|YP_007301855.1| - 0.0062 15.9 0.0 0.015 14.6 0.0 1.7 1 1 0 1 1 1 1 YhjQ protein VirC1 PF07015.6 gi|435849914|ref|YP_007301855.1| - 0.029 13.4 0.1 0.16 11.0 0.0 1.9 2 0 0 2 2 2 0 VirC1 protein DUF1357 PF07094.6 gi|435849914|ref|YP_007301855.1| - 0.09 12.2 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1357) SRP54 PF00448.17 gi|435849914|ref|YP_007301855.1| - 0.42 10.0 3.6 9.2 5.6 0.3 2.9 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain Phosphoprotein PF00922.12 gi|435849915|ref|YP_007301856.1| - 0.00059 19.1 1.1 0.00082 18.6 0.8 1.1 1 0 0 1 1 1 1 Vesiculovirus phosphoprotein DUF4100 PF13352.1 gi|435849915|ref|YP_007301856.1| - 0.05 13.0 3.9 1.1 8.6 0.2 2.8 2 1 0 3 3 3 0 Protein of unknown function (DUF4100) DDE_Tnp_1 PF01609.16 gi|435849916|ref|YP_007301857.1| - 9.8e-17 61.1 1.7 9.8e-17 61.1 1.2 1.6 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|435849916|ref|YP_007301857.1| - 0.00086 18.9 0.4 0.0014 18.2 0.3 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF772 PF05598.6 gi|435849916|ref|YP_007301857.1| - 0.0013 18.5 0.6 0.0029 17.4 0.4 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.1 gi|435849916|ref|YP_007301857.1| - 0.0016 18.5 0.3 0.0044 17.1 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|435849916|ref|YP_007301857.1| - 0.0022 17.7 1.2 0.0054 16.4 0.8 1.7 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|435849916|ref|YP_007301857.1| - 0.006 16.5 0.6 0.011 15.7 0.4 1.6 1 0 0 1 1 1 1 Transposase DDE domain Lactamase_B_2 PF12706.2 gi|435849916|ref|YP_007301857.1| - 0.048 13.1 0.1 0.095 12.2 0.0 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DNA_methylase PF00145.12 gi|435849917|ref|YP_007301858.1| - 1.5e-76 257.7 0.0 1.2e-75 254.7 0.0 1.9 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase DUF4180 PF13788.1 gi|435849918|ref|YP_007301859.1| - 0.058 13.0 0.2 0.067 12.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4180) DUF716 PF04819.7 gi|435849918|ref|YP_007301859.1| - 0.13 11.6 4.6 0.075 12.4 2.0 1.5 2 0 0 2 2 2 0 Family of unknown function (DUF716) Fer4_NifH PF00142.13 gi|435849920|ref|YP_007301861.1| - 0.095 11.8 0.1 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Tox-MPTase2 PF15638.1 gi|435849920|ref|YP_007301861.1| - 0.11 12.0 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 Metallopeptidase toxin 2 DUF1837 PF08878.6 gi|435849920|ref|YP_007301861.1| - 0.16 11.5 1.9 0.21 11.1 1.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1837) Peptidase_S13 PF02113.10 gi|435849922|ref|YP_007301863.1| - 0.12 10.8 0.0 0.15 10.5 0.0 1.1 1 0 0 1 1 1 0 D-Ala-D-Ala carboxypeptidase 3 (S13) family Sgf11 PF08209.6 gi|435849922|ref|YP_007301863.1| - 4 6.8 7.1 0.63 9.4 0.6 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) pRN1_helical PF13010.1 gi|435849923|ref|YP_007301864.1| - 0.066 12.8 1.7 0.21 11.1 0.6 2.1 2 1 0 2 2 2 0 Primase helical domain N6_N4_Mtase PF01555.13 gi|435849924|ref|YP_007301865.1| - 2.1e-18 66.6 0.3 1.5e-10 41.0 0.0 2.2 1 1 1 2 2 2 2 DNA methylase Methyltransf_11 PF08241.7 gi|435849924|ref|YP_007301865.1| - 0.029 14.8 0.0 0.24 11.9 0.0 2.6 3 0 0 3 3 3 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|435849924|ref|YP_007301865.1| - 0.052 13.5 0.0 0.12 12.4 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435849924|ref|YP_007301865.1| - 0.094 12.3 0.1 1.1 8.7 0.0 2.4 2 1 0 2 2 2 0 Methyltransferase domain DUF433 PF04255.9 gi|435849924|ref|YP_007301865.1| - 0.12 11.8 0.0 0.33 10.3 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF433) DUF718 PF05336.8 gi|435849927|ref|YP_007301868.1| - 0.06 13.1 0.0 0.08 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF718) DUF965 PF06135.7 gi|435849927|ref|YP_007301868.1| - 0.092 12.7 0.1 0.12 12.4 0.1 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF965) RNase_H_2 PF13482.1 gi|435849930|ref|YP_007301871.1| - 2.8e-08 33.7 4.7 3.1e-06 27.0 0.4 2.4 1 1 1 2 2 2 2 RNase_H superfamily Rad50_zn_hook PF04423.9 gi|435849930|ref|YP_007301871.1| - 0.036 13.5 1.1 0.87 9.1 0.0 2.9 2 0 0 2 2 2 0 Rad50 zinc hook motif DNA_pol_B_exo2 PF10108.4 gi|435849930|ref|YP_007301871.1| - 0.058 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Sgf11 PF08209.6 gi|435849930|ref|YP_007301871.1| - 0.082 12.2 0.1 0.082 12.2 0.1 4.7 6 0 0 6 6 6 0 Sgf11 (transcriptional regulation protein) DUF723 PF05265.8 gi|435849930|ref|YP_007301871.1| - 0.28 10.9 2.9 0.35 10.7 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF723) zf-RING_3 PF14369.1 gi|435849930|ref|YP_007301871.1| - 4 7.5 16.2 4.7 7.2 0.0 4.5 4 1 1 5 5 5 0 zinc-finger RHH_3 PF12651.2 gi|435849932|ref|YP_007301873.1| - 0.02 14.6 0.0 0.71 9.6 0.0 2.8 2 1 1 3 3 3 0 Ribbon-helix-helix domain DNA_methylase PF00145.12 gi|435849933|ref|YP_007301874.1| - 1e-36 126.7 0.0 4.1e-36 124.7 0.0 1.7 1 1 1 2 2 2 1 C-5 cytosine-specific DNA methylase Interferon PF00143.14 gi|435849933|ref|YP_007301874.1| - 0.11 12.4 0.2 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 Interferon alpha/beta domain DUF1286 PF06939.6 gi|435849934|ref|YP_007301875.1| - 0.078 13.1 0.6 0.078 13.1 0.4 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1286) NPCBM_assoc PF10633.4 gi|435849937|ref|YP_007301878.1| - 8.6e-06 25.7 2.7 0.14 12.2 0.2 4.6 4 1 0 4 4 4 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF4352 PF11611.3 gi|435849937|ref|YP_007301878.1| - 0.00035 20.6 3.4 1.2 9.2 0.3 3.9 3 1 0 3 3 3 2 Domain of unknown function (DUF4352) DUF1034 PF06280.7 gi|435849937|ref|YP_007301878.1| - 0.0016 18.8 1.3 0.84 10.0 0.1 3.9 1 1 2 3 3 3 1 Fn3-like domain (DUF1034) ChiC PF06483.6 gi|435849937|ref|YP_007301878.1| - 0.0092 15.7 1.4 0.092 12.4 0.3 2.6 1 1 2 3 3 3 1 Chitinase C DUF4251 PF14059.1 gi|435849937|ref|YP_007301878.1| - 0.01 15.6 4.0 2.1 8.1 0.0 3.8 4 2 0 4 4 4 0 Domain of unknown function (DUF4251) DUF11 PF01345.13 gi|435849937|ref|YP_007301878.1| - 0.036 14.1 0.9 0.6 10.1 0.1 2.8 2 0 0 2 2 2 0 Domain of unknown function DUF11 ResB PF05140.9 gi|435849937|ref|YP_007301878.1| - 0.054 12.0 0.1 3.9 5.9 0.0 2.1 2 0 0 2 2 2 0 ResB-like family DUF1775 PF07987.6 gi|435849937|ref|YP_007301878.1| - 0.085 12.6 0.2 6.4 6.6 0.0 3.2 2 2 1 3 3 3 0 Domain of unkown function (DUF1775) DUF3988 PF13149.1 gi|435849937|ref|YP_007301878.1| - 0.14 11.6 15.4 0.01 15.3 5.6 2.7 3 1 0 3 3 3 0 Protein of unknown function (DUF3988) DUF2808 PF10989.3 gi|435849937|ref|YP_007301878.1| - 0.15 11.6 3.9 1.2 8.7 0.1 3.4 1 1 3 4 4 4 0 Protein of unknown function (DUF2808) BACON PF13004.2 gi|435849937|ref|YP_007301878.1| - 0.28 11.4 8.4 0.54 10.5 0.2 3.6 4 0 0 4 4 3 0 Bacteroidetes-Associated Carbohydrate-binding Often N-terminal CARDB PF07705.6 gi|435849937|ref|YP_007301878.1| - 0.32 11.0 7.9 3.8 7.6 0.4 4.0 2 1 1 4 4 4 0 CARDB HypA PF01155.14 gi|435849938|ref|YP_007301879.1| - 0.0025 17.4 0.4 0.0027 17.3 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|435849938|ref|YP_007301879.1| - 0.0037 16.5 1.2 0.086 12.1 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding zf-Sec23_Sec24 PF04810.10 gi|435849938|ref|YP_007301879.1| - 0.0066 15.9 1.1 1.1 8.8 0.1 2.2 2 0 0 2 2 2 1 Sec23/Sec24 zinc finger Zn_Tnp_IS1 PF03811.8 gi|435849938|ref|YP_007301879.1| - 0.019 14.4 2.4 0.15 11.5 0.0 2.1 2 0 0 2 2 2 0 InsA N-terminal domain Lar_restr_allev PF14354.1 gi|435849938|ref|YP_007301879.1| - 0.027 14.7 3.3 0.12 12.7 0.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C2H2_4 PF13894.1 gi|435849938|ref|YP_007301879.1| - 0.03 14.6 0.6 4.8 7.7 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_5 PF13719.1 gi|435849938|ref|YP_007301879.1| - 0.031 13.8 2.9 0.046 13.3 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain C1_1 PF00130.17 gi|435849938|ref|YP_007301879.1| - 0.034 13.8 1.7 0.044 13.5 1.2 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Stc1 PF12898.2 gi|435849938|ref|YP_007301879.1| - 0.05 13.6 0.6 0.05 13.6 0.4 1.1 1 0 0 1 1 1 0 Stc1 domain OrfB_Zn_ribbon PF07282.6 gi|435849938|ref|YP_007301879.1| - 0.053 13.1 2.0 0.62 9.7 0.2 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-Di19 PF05605.7 gi|435849938|ref|YP_007301879.1| - 0.053 13.6 1.1 5.1 7.3 0.0 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DZR PF12773.2 gi|435849938|ref|YP_007301879.1| - 0.055 13.2 0.6 0.08 12.7 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_6 PF14599.1 gi|435849938|ref|YP_007301879.1| - 0.078 12.7 1.8 0.11 12.3 1.3 1.3 1 0 0 1 1 1 0 Zinc-ribbon Zn_Tnp_IS1595 PF12760.2 gi|435849938|ref|YP_007301879.1| - 0.08 12.7 1.7 4.6 7.1 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|435849938|ref|YP_007301879.1| - 0.092 13.0 4.5 2.4 8.6 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain DUF329 PF03884.9 gi|435849938|ref|YP_007301879.1| - 0.11 12.0 0.4 0.13 11.8 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF329) Cys_rich_CPXG PF14255.1 gi|435849938|ref|YP_007301879.1| - 0.11 12.3 0.4 2.6 7.9 0.0 2.1 2 0 0 2 2 2 0 Cysteine-rich CPXCG zinc_ribbon_4 PF13717.1 gi|435849938|ref|YP_007301879.1| - 0.29 10.8 5.9 1.9 8.2 4.1 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|435849938|ref|YP_007301879.1| - 0.33 10.6 3.9 0.5 10.0 2.7 1.3 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TFIIS_C PF01096.13 gi|435849938|ref|YP_007301879.1| - 0.39 10.3 2.0 8.5 6.1 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|435849938|ref|YP_007301879.1| - 0.43 9.8 5.3 1.7 7.9 3.8 1.8 1 1 1 2 2 2 0 zinc-ribbon domain DUF866 PF05907.8 gi|435849938|ref|YP_007301879.1| - 0.67 9.4 2.5 5.6 6.4 1.7 1.9 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) Mu-like_Com PF10122.4 gi|435849938|ref|YP_007301879.1| - 0.71 8.9 3.4 1.3 8.1 2.4 1.6 1 1 0 1 1 1 0 Mu-like prophage protein Com zf-BED PF02892.10 gi|435849938|ref|YP_007301879.1| - 0.76 9.5 4.6 1.6 8.5 3.2 1.6 1 1 0 1 1 1 0 BED zinc finger Zn-ribbon_8 PF09723.5 gi|435849938|ref|YP_007301879.1| - 1.3 9.0 6.0 12 5.8 4.2 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-FCS PF06467.9 gi|435849938|ref|YP_007301879.1| - 7.1 6.3 6.9 34 4.1 4.8 1.9 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Disaggr_repeat PF06848.6 gi|435849939|ref|YP_007301880.1| - 6.1e-77 257.1 4.6 1.3e-76 256.1 3.2 1.6 1 0 0 1 1 1 1 Disaggregatase related repeat Disaggr_assoc PF08480.5 gi|435849939|ref|YP_007301880.1| - 3.4e-40 137.6 19.6 3.4e-40 137.6 13.6 2.7 2 1 0 2 2 2 1 Disaggregatase related PKD PF00801.15 gi|435849939|ref|YP_007301880.1| - 1.5e-13 50.2 7.7 1.5e-13 50.2 5.3 2.8 1 1 1 2 2 2 1 PKD domain Beta_helix PF13229.1 gi|435849939|ref|YP_007301880.1| - 1.2e-07 31.5 48.9 5.3e-06 26.2 19.5 4.7 2 2 2 4 4 4 2 Right handed beta helix region TGFb_propeptide PF00688.13 gi|435849939|ref|YP_007301880.1| - 0.00022 20.6 0.0 0.19 10.9 0.0 2.2 2 0 0 2 2 2 2 TGF-beta propeptide FGE-sulfatase PF03781.11 gi|435849940|ref|YP_007301881.1| - 1.7e-48 165.2 8.4 9.8e-48 162.7 5.8 2.1 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 ABC2_membrane_3 PF12698.2 gi|435849940|ref|YP_007301881.1| - 0.78 8.7 8.2 0.71 8.8 2.7 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein AAA_22 PF13401.1 gi|435849941|ref|YP_007301882.1| - 1.8e-14 53.9 0.0 4.8e-14 52.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|435849941|ref|YP_007301882.1| - 1.3e-09 37.6 1.1 2.7e-09 36.6 0.2 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|435849941|ref|YP_007301882.1| - 1.6e-08 34.7 0.0 2e-07 31.1 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|435849941|ref|YP_007301882.1| - 2.1e-07 31.2 0.2 6.6e-07 29.5 0.0 2.0 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|435849941|ref|YP_007301882.1| - 7.7e-05 22.4 0.0 0.00015 21.5 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|435849941|ref|YP_007301882.1| - 0.00019 21.1 0.0 0.00045 19.9 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_19 PF13245.1 gi|435849941|ref|YP_007301882.1| - 0.00052 19.7 0.0 0.004 16.8 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain AAA_5 PF07728.9 gi|435849941|ref|YP_007301882.1| - 0.011 15.4 0.3 0.083 12.6 0.2 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF2075 PF09848.4 gi|435849941|ref|YP_007301882.1| - 0.013 14.4 0.1 0.022 13.7 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.13 gi|435849941|ref|YP_007301882.1| - 0.019 14.5 0.0 18 4.9 0.0 3.1 3 0 0 3 3 3 0 Bacterial dnaA protein NB-ARC PF00931.17 gi|435849941|ref|YP_007301882.1| - 0.021 13.6 0.0 0.034 13.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|435849941|ref|YP_007301882.1| - 0.026 13.9 0.6 0.066 12.6 0.1 2.1 2 1 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|435849941|ref|YP_007301882.1| - 0.026 15.3 0.1 0.11 13.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|435849941|ref|YP_007301882.1| - 0.026 14.0 0.2 0.065 12.8 0.2 1.8 1 1 0 1 1 1 0 AAA domain DUF815 PF05673.8 gi|435849941|ref|YP_007301882.1| - 0.036 12.9 0.0 0.087 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|435849941|ref|YP_007301882.1| - 0.041 14.0 0.1 0.21 11.8 0.0 2.1 2 0 0 2 2 2 0 RNA helicase KAP_NTPase PF07693.9 gi|435849941|ref|YP_007301882.1| - 0.044 12.7 0.4 6.8 5.5 0.0 2.4 1 1 0 2 2 2 0 KAP family P-loop domain AAA_30 PF13604.1 gi|435849941|ref|YP_007301882.1| - 0.058 12.9 0.1 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|435849941|ref|YP_007301882.1| - 0.12 11.9 0.0 0.25 10.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|435849941|ref|YP_007301882.1| - 0.13 11.4 0.0 0.24 10.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI