# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|435849689|ref|YP_007301630.1| - 2.8e-17 62.4 0.0 6.5e-17 61.3 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|435849689|ref|YP_007301630.1| - 8.1e-10 39.1 0.0 1.6e-09 38.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|435849689|ref|YP_007301630.1| - 1.8e-07 31.7 0.1 4e-07 30.5 0.1 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|435849689|ref|YP_007301630.1| - 2.1e-06 27.8 1.4 7.4e-06 26.0 1.4 1.9 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|435849689|ref|YP_007301630.1| - 1.9e-05 24.7 0.0 4.7e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TniB PF05621.11 gi|435849689|ref|YP_007301630.1| - 0.00028 20.3 0.3 0.0012 18.3 0.1 2.0 2 0 0 2 2 2 1 Bacterial TniB protein NACHT PF05729.12 gi|435849689|ref|YP_007301630.1| - 0.00041 20.3 0.0 0.0007 19.5 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Pox_D5 PF03288.16 gi|435849689|ref|YP_007301630.1| - 0.00047 20.6 0.0 0.0017 18.8 0.0 1.9 1 0 0 1 1 1 1 Poxvirus D5 protein-like AAA_2 PF07724.14 gi|435849689|ref|YP_007301630.1| - 0.0014 18.8 0.3 0.0052 16.9 0.3 1.9 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) Mg_chelatase PF01078.21 gi|435849689|ref|YP_007301630.1| - 0.0042 16.5 0.0 0.0079 15.6 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Mg_chelatase_C PF13335.6 gi|435849689|ref|YP_007301630.1| - 0.0053 17.4 0.2 0.011 16.4 0.2 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI C-terminal AAA_7 PF12775.7 gi|435849689|ref|YP_007301630.1| - 0.0062 16.1 0.1 0.013 15.0 0.1 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_16 PF13191.6 gi|435849689|ref|YP_007301630.1| - 0.0065 16.9 0.0 0.026 14.9 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|435849689|ref|YP_007301630.1| - 0.012 15.4 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|435849689|ref|YP_007301630.1| - 0.019 15.3 1.0 0.44 10.9 1.0 2.5 1 1 0 1 1 1 0 RNA helicase Imm41 PF15592.6 gi|435849689|ref|YP_007301630.1| - 0.019 15.3 0.5 0.019 15.3 0.5 2.5 4 0 0 4 4 2 0 Immunity protein 41 DUF87 PF01935.17 gi|435849689|ref|YP_007301630.1| - 0.02 15.0 0.6 0.067 13.3 0.1 2.0 2 0 0 2 2 2 0 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|435849689|ref|YP_007301630.1| - 0.043 13.2 0.1 0.086 12.2 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family ResIII PF04851.15 gi|435849689|ref|YP_007301630.1| - 0.051 13.6 1.3 0.16 12.0 1.2 1.8 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit T2SSE PF00437.20 gi|435849689|ref|YP_007301630.1| - 0.065 12.3 0.1 0.17 10.9 0.1 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein TIP49_C PF17856.1 gi|435849689|ref|YP_007301630.1| - 0.066 13.4 0.0 0.19 11.9 0.0 1.7 1 0 0 1 1 1 0 TIP49 AAA-lid domain AAA_19 PF13245.6 gi|435849689|ref|YP_007301630.1| - 0.068 13.5 0.4 0.22 11.9 0.4 1.9 1 1 0 1 1 1 0 AAA domain RFX_DNA_binding PF02257.15 gi|435849689|ref|YP_007301630.1| - 0.081 13.6 0.0 0.34 11.6 0.0 2.0 2 0 0 2 2 1 0 RFX DNA-binding domain DUF815 PF05673.13 gi|435849689|ref|YP_007301630.1| - 0.093 11.9 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF2075 PF09848.9 gi|435849689|ref|YP_007301630.1| - 0.14 11.3 0.0 0.38 9.9 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Torsin PF06309.11 gi|435849689|ref|YP_007301630.1| - 0.15 12.1 0.5 1.7 8.7 0.1 2.3 1 1 1 2 2 2 0 Torsin DEAD PF00270.29 gi|435849689|ref|YP_007301630.1| - 0.19 11.5 1.7 5.8 6.6 1.7 2.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase DEAD PF00270.29 gi|435849690|ref|YP_007301631.1| - 4.4e-25 88.5 0.5 4.6e-24 85.1 0.0 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|435849690|ref|YP_007301631.1| - 6.6e-11 42.5 0.4 4.9e-09 36.5 0.0 3.8 3 1 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|435849690|ref|YP_007301631.1| - 3.2e-10 40.3 0.3 2.9e-09 37.2 0.0 2.5 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DSHCT PF08148.12 gi|435849690|ref|YP_007301631.1| - 0.037 13.7 0.4 0.37 10.4 0.0 2.8 3 0 0 3 3 3 0 DSHCT (NUC185) domain tRNA_anti-codon PF01336.25 gi|435849693|ref|YP_007301634.1| - 0.056 13.4 0.0 0.096 12.7 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain zf-C2H2_6 PF13912.6 gi|435849695|ref|YP_007301636.1| - 0.0068 16.4 0.6 0.012 15.6 0.6 1.4 1 0 0 1 1 1 1 C2H2-type zinc finger YpsA PF06908.11 gi|435849697|ref|YP_007301638.1| - 2.8e-25 89.3 0.0 3.3e-25 89.0 0.0 1.0 1 0 0 1 1 1 1 YspA SLOG family DNA_processg_A PF02481.15 gi|435849697|ref|YP_007301638.1| - 6.6e-08 32.1 0.0 7.6e-08 31.9 0.0 1.0 1 0 0 1 1 1 1 DNA recombination-mediator protein A cpYpsA PF12694.7 gi|435849697|ref|YP_007301638.1| - 0.046 13.5 0.0 0.084 12.7 0.0 1.6 1 1 0 1 1 1 0 Circularly permutated YpsA SLOG family Nuc_deoxyrib_tr PF05014.15 gi|435849697|ref|YP_007301638.1| - 0.086 12.9 0.1 0.16 11.9 0.1 1.6 1 1 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase YAcAr PF10686.9 gi|435849697|ref|YP_007301638.1| - 0.15 12.1 0.0 0.32 11.0 0.0 1.6 1 1 0 1 1 1 0 YspA, cpYpsA-related SLOG family RNase_HII PF01351.18 gi|435849698|ref|YP_007301639.1| - 7.5e-25 87.9 0.2 8.1e-24 84.6 0.2 2.1 1 1 0 1 1 1 1 Ribonuclease HII UPF0180 PF03698.13 gi|435849698|ref|YP_007301639.1| - 0.038 14.2 0.1 0.13 12.4 0.1 1.9 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) DUF4313 PF14190.6 gi|435849700|ref|YP_007301641.1| - 3.9e-06 26.8 0.0 4.7e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4313) OrfB_Zn_ribbon PF07282.11 gi|435849702|ref|YP_007301643.1| - 1.7e-20 72.7 2.3 3.9e-20 71.5 2.3 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|435849702|ref|YP_007301643.1| - 7.5e-09 35.9 1.3 1.4e-08 35.0 1.3 1.4 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|435849702|ref|YP_007301643.1| - 4.5e-07 29.3 0.0 1.3e-06 27.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain C1_1 PF00130.22 gi|435849702|ref|YP_007301643.1| - 0.0041 17.0 1.1 0.0091 15.9 1.1 1.5 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_2 PF03107.16 gi|435849702|ref|YP_007301643.1| - 0.0049 17.1 4.7 0.011 16.0 4.7 1.6 1 0 0 1 1 1 1 C1 domain PLDc_3 PF13918.6 gi|435849702|ref|YP_007301643.1| - 0.033 13.8 0.9 8.7 6.0 0.1 2.6 1 1 0 2 2 2 0 PLD-like domain Tyrosinase PF00264.20 gi|435849702|ref|YP_007301643.1| - 0.066 13.5 1.7 0.14 12.4 0.4 2.1 2 0 0 2 2 2 0 Common central domain of tyrosinase Band_3_cyto PF07565.13 gi|435849702|ref|YP_007301643.1| - 0.12 12.2 0.3 0.24 11.2 0.3 1.4 1 0 0 1 1 1 0 Band 3 cytoplasmic domain FYVE PF01363.21 gi|435849702|ref|YP_007301643.1| - 0.35 11.0 6.0 0.14 12.3 2.0 2.2 2 0 0 2 2 2 0 FYVE zinc finger OrfB_Zn_ribbon PF07282.11 gi|435849704|ref|YP_007301645.1| - 9.4e-21 73.5 1.0 1.8e-20 72.6 1.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|435849704|ref|YP_007301645.1| - 3.6e-10 40.1 1.8 7.2e-10 39.1 1.8 1.4 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|435849704|ref|YP_007301645.1| - 4.5e-09 35.6 0.0 4e-08 32.6 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Band_3_cyto PF07565.13 gi|435849704|ref|YP_007301645.1| - 0.13 12.1 0.4 0.21 11.3 0.4 1.4 1 0 0 1 1 1 0 Band 3 cytoplasmic domain Orn_DAP_Arg_deC PF00278.22 gi|435849704|ref|YP_007301645.1| - 0.15 12.3 0.1 0.41 10.9 0.1 1.8 1 1 0 1 1 1 0 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Tyrosinase PF00264.20 gi|435849704|ref|YP_007301645.1| - 2 8.7 5.6 3.9 7.7 3.2 2.2 2 1 0 2 2 2 0 Common central domain of tyrosinase HHA PF05321.11 gi|435849705|ref|YP_007301646.1| - 0.087 13.2 0.1 0.13 12.6 0.1 1.4 1 0 0 1 1 1 0 Haemolysin expression modulating protein ABC_tran_CTD PF16326.5 gi|435849705|ref|YP_007301646.1| - 0.44 10.8 8.1 4.1 7.7 8.1 2.1 1 1 0 1 1 1 0 ABC transporter C-terminal domain DUF469 PF04320.14 gi|435849706|ref|YP_007301647.1| - 0.12 13.2 0.0 0.24 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein with unknown function (DUF469) EBV-NA3 PF05009.12 gi|435849707|ref|YP_007301648.1| - 0.072 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) NRDD PF13597.6 gi|435849708|ref|YP_007301649.1| - 6.1e-158 527.1 0.0 7.2e-158 526.8 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase MCM PF00493.23 gi|435849709|ref|YP_007301650.1| - 9.6e-91 302.8 1.0 3.9e-90 300.9 0.2 1.9 2 0 0 2 2 2 1 MCM P-loop domain MCM_OB PF17207.3 gi|435849709|ref|YP_007301650.1| - 1.2e-28 99.5 0.5 2.6e-28 98.4 0.5 1.6 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|435849709|ref|YP_007301650.1| - 4.6e-26 91.1 0.3 1e-25 90.0 0.3 1.6 1 0 0 1 1 1 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|435849709|ref|YP_007301650.1| - 6.7e-08 32.2 0.1 3.7e-05 23.2 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|435849709|ref|YP_007301650.1| - 2.9e-06 27.3 0.0 5.2e-05 23.3 0.0 3.1 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|435849709|ref|YP_007301650.1| - 6.5e-05 22.8 0.0 0.00023 21.0 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|435849709|ref|YP_007301650.1| - 0.00051 19.8 0.0 0.0064 16.2 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain MCM_N PF14551.6 gi|435849709|ref|YP_007301650.1| - 0.0024 18.4 0.1 0.0077 16.8 0.1 1.9 1 0 0 1 1 1 1 MCM N-terminal domain AAA_22 PF13401.6 gi|435849709|ref|YP_007301650.1| - 0.003 17.8 0.6 0.15 12.3 0.0 3.1 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|435849709|ref|YP_007301650.1| - 0.055 13.9 0.1 0.16 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_7 PF12775.7 gi|435849709|ref|YP_007301650.1| - 0.072 12.6 0.0 2.7 7.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region Lipocalin_5 PF13924.6 gi|435849709|ref|YP_007301650.1| - 0.11 12.3 0.0 0.27 11.0 0.0 1.6 2 0 0 2 2 2 0 Lipocalin-like domain Cdc6_C PF09079.11 gi|435849710|ref|YP_007301651.1| - 8e-14 51.4 0.1 3.3e-13 49.4 0.0 2.0 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|435849710|ref|YP_007301651.1| - 2.7e-06 27.7 0.2 8.4e-06 26.1 0.1 1.9 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|435849710|ref|YP_007301651.1| - 0.00051 19.3 0.0 0.0056 15.9 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|435849710|ref|YP_007301651.1| - 0.00067 18.9 1.6 0.0054 15.9 1.6 2.1 1 1 0 1 1 1 1 NB-ARC domain AAA_16 PF13191.6 gi|435849710|ref|YP_007301651.1| - 0.00093 19.6 0.0 0.0019 18.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain TniB PF05621.11 gi|435849710|ref|YP_007301651.1| - 0.0016 17.9 2.1 0.0022 17.4 0.2 1.9 2 0 0 2 2 2 1 Bacterial TniB protein RFX_DNA_binding PF02257.15 gi|435849710|ref|YP_007301651.1| - 0.0054 17.3 0.0 0.011 16.3 0.0 1.5 1 0 0 1 1 1 1 RFX DNA-binding domain Roc PF08477.13 gi|435849710|ref|YP_007301651.1| - 0.011 15.9 0.0 0.025 14.8 0.0 1.6 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_7 PF12775.7 gi|435849710|ref|YP_007301651.1| - 0.034 13.6 0.0 0.077 12.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Stork_head PF10264.9 gi|435849710|ref|YP_007301651.1| - 0.051 13.7 2.1 0.13 12.4 0.3 2.4 2 0 0 2 2 2 0 Winged helix Storkhead-box1 domain AAA PF00004.29 gi|435849710|ref|YP_007301651.1| - 0.058 13.8 0.1 0.23 11.9 0.0 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) tRNA_lig_kinase PF08303.11 gi|435849710|ref|YP_007301651.1| - 0.32 11.1 6.1 0.23 11.6 1.1 2.9 1 1 2 3 3 3 0 tRNA ligase kinase domain CT47 PF15623.6 gi|435849711|ref|YP_007301652.1| - 0.1 12.4 0.1 0.1 12.4 0.1 1.0 1 0 0 1 1 1 0 Cancer/testis gene family 47 DUF2969 PF11184.8 gi|435849712|ref|YP_007301653.1| - 0.058 13.8 0.1 0.076 13.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2969) DUP PF00674.18 gi|435849712|ref|YP_007301653.1| - 0.14 12.3 0.0 0.18 12.0 0.0 1.1 1 0 0 1 1 1 0 DUP family DUF5422 PF17459.2 gi|435849713|ref|YP_007301654.1| - 0.0098 16.1 0.3 0.012 15.8 0.3 1.3 1 1 0 1 1 1 1 Family of unknown function (DUF5422) SLATT_fungal PF18142.1 gi|435849713|ref|YP_007301654.1| - 0.41 10.6 2.9 0.52 10.3 2.9 1.2 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain DUF5362 PF17319.2 gi|435849714|ref|YP_007301655.1| - 0.049 13.5 0.9 0.052 13.4 0.9 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5362) Rnf-Nqr PF02508.14 gi|435849715|ref|YP_007301656.1| - 0.0017 18.4 0.8 0.0018 18.3 0.8 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein DUF4307 PF14155.6 gi|435849715|ref|YP_007301656.1| - 0.016 15.1 0.3 0.018 14.9 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) SUD-M PF11633.8 gi|435849715|ref|YP_007301656.1| - 0.053 13.2 0.1 0.054 13.2 0.1 1.1 1 0 0 1 1 1 0 Single-stranded poly(A) binding domain GxGYxYP_C PF14323.6 gi|435849719|ref|YP_007301660.1| - 0.14 12.1 0.0 0.16 11.8 0.0 1.0 1 0 0 1 1 1 0 GxGYxYP putative glycoside hydrolase C-terminal domain MinE PF03776.14 gi|435849721|ref|YP_007301662.1| - 0.18 11.8 0.4 0.53 10.3 0.0 2.0 2 0 0 2 2 2 0 Septum formation topological specificity factor MinE Methyltransf_PK PF05891.12 gi|435849728|ref|YP_007301669.1| - 0.11 12.0 0.0 0.14 11.6 0.0 1.3 1 1 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Acetyltransf_7 PF13508.7 gi|435849729|ref|YP_007301670.1| - 0.0015 18.9 0.0 0.0026 18.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|435849729|ref|YP_007301670.1| - 0.018 15.0 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF2812 PF11193.8 gi|435849729|ref|YP_007301670.1| - 0.073 13.3 0.2 0.12 12.6 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2812) FR47 PF08445.10 gi|435849729|ref|YP_007301670.1| - 0.11 12.4 0.0 0.3 11.1 0.0 1.7 2 0 0 2 2 2 0 FR47-like protein ETRAMP PF09716.10 gi|435849730|ref|YP_007301671.1| - 0.011 15.8 4.8 1.1 9.3 0.1 4.1 3 1 0 3 3 3 0 Malarial early transcribed membrane protein (ETRAMP) bZIP_1 PF00170.21 gi|435849730|ref|YP_007301671.1| - 0.087 12.9 16.5 0.66 10.1 1.2 4.9 4 0 0 4 4 4 0 bZIP transcription factor DUF1493 PF07377.12 gi|435849730|ref|YP_007301671.1| - 0.18 12.3 4.7 2.8 8.4 0.4 3.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1493) CbiA PF01656.23 gi|435849731|ref|YP_007301672.1| - 2.4e-08 34.1 3.5 2.5e-07 30.8 3.5 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|435849731|ref|YP_007301672.1| - 1.4e-07 31.6 3.2 1.4e-07 31.6 0.3 2.2 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|435849731|ref|YP_007301672.1| - 1.5e-05 24.3 1.5 0.05 12.8 0.3 2.5 2 0 0 2 2 2 2 Anion-transporting ATPase MipZ PF09140.11 gi|435849731|ref|YP_007301672.1| - 2e-05 24.1 0.1 9.7e-05 21.8 0.0 2.0 2 0 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.18 gi|435849731|ref|YP_007301672.1| - 0.00041 19.9 2.5 0.12 11.8 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|435849731|ref|YP_007301672.1| - 0.0041 16.6 1.4 0.01 15.3 0.1 2.1 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase APS_kinase PF01583.20 gi|435849731|ref|YP_007301672.1| - 0.12 12.2 0.0 0.5 10.2 0.0 1.9 2 0 0 2 2 2 0 Adenylylsulphate kinase Topoisom_bac PF01131.20 gi|435849735|ref|YP_007301676.1| - 4.1e-37 128.2 0.0 9.8e-37 126.9 0.0 1.5 1 1 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|435849735|ref|YP_007301676.1| - 2e-08 33.9 2.2 6.9e-08 32.2 2.2 2.0 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|435849735|ref|YP_007301676.1| - 0.0042 17.3 0.0 0.017 15.4 0.0 2.0 1 0 0 1 1 1 1 Toprim domain DUF4258 PF14076.6 gi|435849735|ref|YP_007301676.1| - 2 8.8 3.9 7 7.1 0.0 3.2 4 0 0 4 4 4 0 Domain of unknown function (DUF4258) CarboxypepD_reg PF13620.6 gi|435849736|ref|YP_007301677.1| - 5.6e-09 36.1 2.2 2.6e-08 34.0 1.5 2.4 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|435849736|ref|YP_007301677.1| - 0.013 15.5 1.0 0.013 15.5 1.0 2.9 3 1 0 3 3 3 0 CarboxypepD_reg-like domain DUF5626 PF18540.1 gi|435849736|ref|YP_007301677.1| - 0.085 13.4 3.4 0.26 11.8 0.9 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF5626) SdrD_B PF17210.3 gi|435849736|ref|YP_007301677.1| - 0.69 10.2 5.3 0.31 11.3 2.3 1.9 2 0 0 2 2 2 0 SdrD B-like domain Glycoprot_B_PH2 PF17417.2 gi|435849738|ref|YP_007301679.1| - 0.0075 16.6 0.1 0.018 15.3 0.1 1.6 2 0 0 2 2 2 1 Herpesvirus Glycoprotein B PH-like domain DNA_primase_S PF01896.19 gi|435849738|ref|YP_007301679.1| - 0.066 13.3 0.0 1 9.4 0.0 2.2 1 1 1 2 2 2 0 DNA primase small subunit Terpene_synth PF01397.21 gi|435849739|ref|YP_007301680.1| - 0.23 11.1 0.6 2.3 7.9 0.1 2.2 2 0 0 2 2 2 0 Terpene synthase, N-terminal domain PIG-F PF06699.11 gi|435849739|ref|YP_007301680.1| - 1.3 9.2 7.2 0.6 10.3 2.6 2.5 2 0 0 2 2 2 0 GPI biosynthesis protein family Pig-F Neurensin PF14927.6 gi|435849739|ref|YP_007301680.1| - 10 5.9 7.0 1 9.1 0.1 2.6 3 0 0 3 3 3 0 Neurensin DUF87 PF01935.17 gi|435849741|ref|YP_007301682.1| - 1.6e-06 28.4 3.4 2.4e-06 27.8 0.0 2.9 4 1 0 4 4 4 1 Helicase HerA, central domain DUF853 PF05872.12 gi|435849741|ref|YP_007301682.1| - 1.2e-05 24.1 0.0 2e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|435849741|ref|YP_007301682.1| - 0.00021 20.3 0.0 0.0011 18.0 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain DEAD PF00270.29 gi|435849741|ref|YP_007301682.1| - 0.00051 19.8 0.0 0.002 17.9 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase TrwB_AAD_bind PF10412.9 gi|435849741|ref|YP_007301682.1| - 0.00077 18.5 0.0 0.0015 17.5 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 gi|435849741|ref|YP_007301682.1| - 0.0011 19.0 0.2 0.0046 17.0 0.1 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit T2SSE PF00437.20 gi|435849741|ref|YP_007301682.1| - 0.029 13.4 1.2 0.073 12.1 0.0 2.2 3 0 0 3 3 3 0 Type II/IV secretion system protein LidA_Long_CC PF18641.1 gi|435849741|ref|YP_007301682.1| - 0.052 13.6 0.3 0.1 12.6 0.3 1.4 1 0 0 1 1 1 0 LidA long coiled-coil domain FtsK_SpoIIIE PF01580.18 gi|435849741|ref|YP_007301682.1| - 0.071 12.4 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_19 PF13245.6 gi|435849741|ref|YP_007301682.1| - 0.12 12.7 0.7 1.1 9.5 0.1 2.4 2 0 0 2 2 2 0 AAA domain Myc_target_1 PF15179.6 gi|435849742|ref|YP_007301683.1| - 0.2 11.5 0.3 0.46 10.4 0.3 1.5 1 0 0 1 1 1 0 Myc target protein 1 T2SSE PF00437.20 gi|435849750|ref|YP_007301691.1| - 3.8e-15 55.7 0.0 8e-15 54.6 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein Aminopep PF10023.9 gi|435849751|ref|YP_007301692.1| - 0.074 12.4 0.0 0.093 12.1 0.0 1.2 1 0 0 1 1 1 0 Putative aminopeptidase Y1_Tnp PF01797.16 gi|435849752|ref|YP_007301693.1| - 6.3e-25 87.6 1.0 6.8e-25 87.5 1.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_IS605 PF01385.19 gi|435849753|ref|YP_007301694.1| - 3.6e-27 95.0 1.9 6.8e-27 94.1 1.8 1.5 1 1 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|435849753|ref|YP_007301694.1| - 2.5e-23 81.8 0.2 4.9e-23 80.8 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|435849753|ref|YP_007301694.1| - 3.8e-22 77.5 0.2 7.4e-22 76.6 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain A2L_zn_ribbon PF08792.10 gi|435849753|ref|YP_007301694.1| - 0.0055 16.4 1.2 0.011 15.4 1.2 1.5 1 0 0 1 1 1 1 A2L zinc ribbon domain zf-piccolo PF05715.13 gi|435849753|ref|YP_007301694.1| - 0.016 15.3 3.2 0.037 14.2 1.5 2.2 2 0 0 2 2 2 0 Piccolo Zn-finger HypA PF01155.19 gi|435849753|ref|YP_007301694.1| - 0.065 13.3 0.1 0.14 12.2 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RanBP PF00641.18 gi|435849753|ref|YP_007301694.1| - 0.072 12.4 6.3 1.1 8.6 1.7 2.6 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others DZR PF12773.7 gi|435849753|ref|YP_007301694.1| - 0.17 12.0 0.7 0.3 11.1 0.7 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF5477 PF17571.2 gi|435849754|ref|YP_007301695.1| - 0.25 11.5 0.0 0.31 11.2 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5477) HTH_45 PF14947.6 gi|435849755|ref|YP_007301696.1| - 7.2e-06 25.9 5.8 0.0011 18.9 0.7 2.1 2 0 0 2 2 2 2 Winged helix-turn-helix HTH_5 PF01022.20 gi|435849755|ref|YP_007301696.1| - 9.8e-05 22.1 0.5 0.027 14.3 0.2 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family DUF4364 PF14277.6 gi|435849755|ref|YP_007301696.1| - 0.00029 20.6 1.9 0.00046 20.0 1.8 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_34 PF13601.6 gi|435849755|ref|YP_007301696.1| - 0.001 19.2 4.0 0.0097 16.1 0.6 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|435849755|ref|YP_007301696.1| - 0.002 18.0 0.1 0.037 13.9 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|435849755|ref|YP_007301696.1| - 0.0073 16.2 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_Crp_2 PF13545.6 gi|435849755|ref|YP_007301696.1| - 0.0083 16.1 0.2 0.031 14.3 0.1 2.0 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|435849755|ref|YP_007301696.1| - 0.015 15.8 0.2 0.032 14.7 0.1 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|435849755|ref|YP_007301696.1| - 0.026 14.6 0.0 0.03 14.4 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation IF2_N PF04760.15 gi|435849755|ref|YP_007301696.1| - 0.067 13.0 3.4 0.29 11.0 0.1 2.8 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region HTH_24 PF13412.6 gi|435849755|ref|YP_007301696.1| - 0.07 12.7 0.7 4.2 7.0 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF2513 PF10711.9 gi|435849755|ref|YP_007301696.1| - 0.08 13.2 1.5 0.16 12.3 0.2 1.9 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) Rio2_N PF09202.11 gi|435849755|ref|YP_007301696.1| - 0.08 13.2 0.1 0.24 11.6 0.0 1.8 2 0 0 2 2 2 0 Rio2, N-terminal HTH_20 PF12840.7 gi|435849755|ref|YP_007301696.1| - 0.13 12.3 0.0 4.4 7.4 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain MazG PF03819.17 gi|435849755|ref|YP_007301696.1| - 0.21 11.8 2.3 0.84 9.9 0.5 2.2 2 0 0 2 2 2 0 MazG nucleotide pyrophosphohydrolase domain AAA_13 PF13166.6 gi|435849757|ref|YP_007301698.1| - 1.3e-07 30.7 44.8 0.0003 19.6 22.7 2.4 3 0 0 3 3 3 2 AAA domain zf-CpG_bind_C PF12269.8 gi|435849757|ref|YP_007301698.1| - 1.6e-07 31.4 5.7 1.6e-07 31.4 5.7 3.7 1 1 2 4 4 4 1 CpG binding protein zinc finger C terminal domain Spc7 PF08317.11 gi|435849757|ref|YP_007301698.1| - 3.6e-05 22.8 52.6 0.0036 16.3 24.5 3.5 2 1 1 3 3 3 3 Spc7 kinetochore protein AAA_15 PF13175.6 gi|435849757|ref|YP_007301698.1| - 7.3e-05 22.6 54.1 0.00063 19.6 45.5 3.2 1 1 1 2 2 2 1 AAA ATPase domain MAD PF05557.13 gi|435849757|ref|YP_007301698.1| - 0.00015 20.3 45.4 0.007 14.8 13.6 2.2 2 0 0 2 2 2 2 Mitotic checkpoint protein AAA_23 PF13476.6 gi|435849757|ref|YP_007301698.1| - 0.00031 21.3 30.0 0.00031 21.3 30.0 4.4 1 1 1 2 2 1 1 AAA domain Sec8_exocyst PF04048.14 gi|435849757|ref|YP_007301698.1| - 0.0017 18.3 0.5 0.0017 18.3 0.5 5.5 3 2 3 7 7 6 1 Sec8 exocyst complex component specific domain AAA_21 PF13304.6 gi|435849757|ref|YP_007301698.1| - 0.0061 16.4 0.2 0.0061 16.4 0.2 2.7 3 1 0 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system HALZ PF02183.18 gi|435849757|ref|YP_007301698.1| - 0.017 15.4 13.5 0.067 13.4 0.9 4.5 3 1 0 3 3 3 0 Homeobox associated leucine zipper TMF_TATA_bd PF12325.8 gi|435849757|ref|YP_007301698.1| - 0.036 14.3 46.3 0.09 13.0 17.1 5.2 2 2 2 4 4 4 0 TATA element modulatory factor 1 TATA binding DUF812 PF05667.11 gi|435849757|ref|YP_007301698.1| - 0.13 11.1 46.8 0.082 11.8 22.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF812) Rad50_zn_hook PF04423.14 gi|435849757|ref|YP_007301698.1| - 0.26 11.1 0.0 0.26 11.1 0.0 6.6 7 1 1 8 8 7 0 Rad50 zinc hook motif DUF3800 PF12686.7 gi|435849757|ref|YP_007301698.1| - 0.46 11.1 10.4 5.1e+02 1.3 10.4 3.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) HMMR_N PF15905.5 gi|435849757|ref|YP_007301698.1| - 0.81 9.1 62.5 0.086 12.3 27.3 4.1 2 2 2 4 4 4 0 Hyaluronan mediated motility receptor N-terminal UPF0242 PF06785.11 gi|435849757|ref|YP_007301698.1| - 0.85 9.7 48.3 1.8 8.7 17.7 3.5 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus HalX PF08663.10 gi|435849757|ref|YP_007301698.1| - 1.9 8.9 6.3 8 6.9 0.8 3.9 3 0 0 3 3 3 0 HalX domain HIP1_clath_bdg PF16515.5 gi|435849757|ref|YP_007301698.1| - 4.2 8.1 45.1 0.39 11.3 1.1 6.0 2 2 4 6 6 6 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Rota_NSP4 PF01452.16 gi|435849757|ref|YP_007301698.1| - 4.5 6.9 20.5 0.34 10.6 8.7 3.2 2 1 2 4 4 4 0 Rotavirus non structural protein Atg14 PF10186.9 gi|435849757|ref|YP_007301698.1| - 5 6.1 53.3 0.6 9.1 16.4 4.4 1 1 2 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 PI3K_P85_iSH2 PF16454.5 gi|435849757|ref|YP_007301698.1| - 5.9 6.5 46.0 3.3 7.3 2.1 4.8 2 2 2 5 5 5 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Baculo_PEP_C PF04513.12 gi|435849757|ref|YP_007301698.1| - 6.7 6.8 34.6 0.77 9.8 7.4 4.5 2 2 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus KASH_CCD PF14662.6 gi|435849757|ref|YP_007301698.1| - 8.3 6.2 51.3 0.26 11.1 10.2 4.6 2 2 3 5 5 5 0 Coiled-coil region of CCDC155 or KASH Fez1 PF06818.15 gi|435849757|ref|YP_007301698.1| - 8.3 6.8 42.3 1.4 9.3 8.9 3.7 1 1 4 5 5 5 0 Fez1 DUF1192 PF06698.11 gi|435849757|ref|YP_007301698.1| - 8.8 6.5 16.9 5.5 7.1 0.1 5.8 4 1 1 5 5 5 0 Protein of unknown function (DUF1192) DASH_Dam1 PF08653.10 gi|435849757|ref|YP_007301698.1| - 9.6 6.1 9.4 54 3.7 0.2 4.8 4 2 0 4 4 4 0 DASH complex subunit Dam1 Glutaredoxin PF00462.24 gi|435849758|ref|YP_007301699.1| - 7.2e-07 29.3 0.2 0.00084 19.5 0.0 2.9 2 1 0 2 2 2 2 Glutaredoxin Thioredoxin PF00085.20 gi|435849758|ref|YP_007301699.1| - 0.00053 19.9 0.1 1.1 9.3 0.0 2.6 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.6 gi|435849758|ref|YP_007301699.1| - 0.0028 18.1 0.2 2.2 8.8 0.1 2.9 2 1 0 2 2 2 2 Thioredoxin-like domain Peptidase_M50 PF02163.22 gi|435849759|ref|YP_007301700.1| - 4.2e-23 81.9 0.1 4.9e-22 78.4 0.1 2.5 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|435849759|ref|YP_007301700.1| - 1.3e-18 67.0 1.6 9.9e-11 41.8 0.5 2.3 2 0 0 2 2 2 2 PDZ domain PDZ_6 PF17820.1 gi|435849759|ref|YP_007301700.1| - 1.8e-12 46.9 0.2 4.9e-06 26.3 0.0 2.4 2 0 0 2 2 2 2 PDZ domain PDZ PF00595.24 gi|435849759|ref|YP_007301700.1| - 4.7e-05 23.7 5.2 0.011 16.0 1.8 2.6 1 1 1 2 2 2 2 PDZ domain PDZ_1 PF12812.7 gi|435849759|ref|YP_007301700.1| - 0.0072 16.3 0.5 2.7 8.1 0.0 2.5 2 0 0 2 2 2 2 PDZ-like domain DUF1699 PF08004.11 gi|435849760|ref|YP_007301701.1| - 1.2e-60 202.9 0.4 1.3e-60 202.8 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) HTH_7 PF02796.15 gi|435849760|ref|YP_007301701.1| - 0.022 14.8 0.0 0.049 13.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Fucosidase_C PF16757.5 gi|435849760|ref|YP_007301701.1| - 0.075 13.6 0.0 0.11 13.0 0.0 1.2 1 0 0 1 1 1 0 Alpha-L-fucosidase C-terminal domain OrfB_IS605 PF01385.19 gi|435849761|ref|YP_007301702.1| - 2.7e-25 88.9 0.7 4.9e-25 88.1 0.7 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|435849761|ref|YP_007301702.1| - 3.9e-21 74.7 0.4 7.7e-21 73.8 0.4 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|435849761|ref|YP_007301702.1| - 3.8e-13 48.7 0.1 8.4e-13 47.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain zf-piccolo PF05715.13 gi|435849761|ref|YP_007301702.1| - 0.016 15.4 0.7 0.035 14.3 0.7 1.5 1 0 0 1 1 1 0 Piccolo Zn-finger C1_2 PF03107.16 gi|435849761|ref|YP_007301702.1| - 0.12 12.7 0.5 0.26 11.6 0.5 1.5 1 0 0 1 1 1 0 C1 domain LAGLIDADG_1 PF00961.19 gi|435849761|ref|YP_007301702.1| - 0.16 13.0 0.1 0.16 13.0 0.1 2.9 3 0 0 3 3 3 0 LAGLIDADG endonuclease DUF3006 PF11213.8 gi|435849762|ref|YP_007301703.1| - 1.2e-17 63.9 0.7 1.3e-17 63.8 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) CHS5_N PF16892.5 gi|435849762|ref|YP_007301703.1| - 0.0022 17.9 0.0 0.0027 17.6 0.0 1.2 1 0 0 1 1 1 1 Chitin biosynthesis protein CHS5 N-terminus HemN_C PF06969.16 gi|435849763|ref|YP_007301704.1| - 0.0073 16.3 0.0 0.019 15.0 0.0 1.6 2 0 0 2 2 2 1 HemN C-terminal domain Myb_DNA-bind_4 PF13837.6 gi|435849764|ref|YP_007301705.1| - 0.00083 19.7 1.6 0.42 11.0 0.1 3.2 3 0 0 3 3 3 2 Myb/SANT-like DNA-binding domain DUF5618 PF18498.1 gi|435849764|ref|YP_007301705.1| - 0.0034 17.6 2.2 2.2 8.5 0.1 3.2 3 1 0 3 3 3 2 Domain of unknown function (DUF5618) PAP_fibrillin PF04755.12 gi|435849764|ref|YP_007301705.1| - 0.039 13.9 3.6 0.45 10.4 0.4 2.5 2 1 0 2 2 2 0 PAP_fibrillin DUF3007 PF11460.8 gi|435849765|ref|YP_007301706.1| - 0.027 14.7 0.4 0.031 14.5 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) AAA_13 PF13166.6 gi|435849766|ref|YP_007301707.1| - 0.02 13.6 3.1 0.026 13.2 3.1 1.0 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|435849767|ref|YP_007301708.1| - 6.1e-27 94.8 0.0 1.4e-26 93.6 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|435849767|ref|YP_007301708.1| - 1e-12 48.5 0.1 2.5e-08 34.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|435849767|ref|YP_007301708.1| - 0.00054 20.6 0.7 0.0012 19.5 0.3 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|435849767|ref|YP_007301708.1| - 0.0013 18.5 0.0 0.42 10.2 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|435849767|ref|YP_007301708.1| - 0.0017 18.8 1.3 0.017 15.5 0.6 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|435849767|ref|YP_007301708.1| - 0.002 18.7 0.3 0.0037 17.8 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|435849767|ref|YP_007301708.1| - 0.033 13.9 0.2 0.062 13.0 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|435849767|ref|YP_007301708.1| - 0.044 13.5 0.3 0.13 12.0 0.3 1.8 1 1 1 2 2 2 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|435849767|ref|YP_007301708.1| - 0.057 13.0 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NPCBM_assoc PF10633.9 gi|435849768|ref|YP_007301709.1| - 4.2e-12 46.1 0.9 0.0001 22.5 0.0 4.5 4 1 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|435849768|ref|YP_007301709.1| - 1.4e-09 38.1 0.1 0.0028 17.9 0.1 3.8 3 1 1 4 4 4 2 Domain of unknown function DUF11 FixG_C PF11614.8 gi|435849768|ref|YP_007301709.1| - 3.1e-05 24.2 2.7 0.012 15.8 0.2 3.4 3 1 2 5 5 5 2 IG-like fold at C-terminal of FixG, putative oxidoreductase CARDB PF07705.11 gi|435849768|ref|YP_007301709.1| - 0.00016 21.9 0.5 0.00016 21.9 0.5 2.7 2 1 2 4 4 4 1 CARDB AP3B1_C PF14796.6 gi|435849768|ref|YP_007301709.1| - 0.014 15.7 0.0 0.034 14.4 0.0 1.6 1 0 0 1 1 1 0 Clathrin-adaptor complex-3 beta-1 subunit C-terminal DUF440 PF04269.12 gi|435849768|ref|YP_007301709.1| - 0.039 14.2 0.1 2.1 8.7 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function, DUF440 MG2 PF01835.19 gi|435849768|ref|YP_007301709.1| - 0.043 14.3 0.2 4.5 7.8 0.0 3.3 3 1 0 3 3 3 0 MG2 domain fn3_5 PF06280.12 gi|435849768|ref|YP_007301709.1| - 0.07 13.8 2.9 0.88 10.3 0.6 3.2 1 1 1 2 2 2 0 Fn3-like domain SpoIIIAC PF06686.11 gi|435849768|ref|YP_007301709.1| - 1.3 9.2 11.9 0.051 13.7 3.1 2.3 2 0 0 2 2 2 0 Stage III sporulation protein AC/AD protein family DUF3871 PF12987.7 gi|435849769|ref|YP_007301710.1| - 0.046 12.5 0.1 0.074 11.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3871) ABC2_membrane_2 PF12679.7 gi|435849770|ref|YP_007301711.1| - 4e-30 105.1 25.4 5.6e-30 104.6 25.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|435849770|ref|YP_007301711.1| - 0.00088 18.5 34.8 0.00088 18.5 34.8 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|435849770|ref|YP_007301711.1| - 0.0022 17.6 22.8 0.0022 17.6 22.8 3.0 1 1 2 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|435849770|ref|YP_007301711.1| - 0.59 9.5 36.1 0.041 13.3 24.7 2.6 2 1 0 2 2 2 0 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|435849770|ref|YP_007301711.1| - 8.2 6.3 32.0 0.51 10.3 21.5 3.0 1 1 2 3 3 3 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|435849771|ref|YP_007301712.1| - 1.1e-32 113.5 17.6 5.2e-32 111.3 17.6 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|435849771|ref|YP_007301712.1| - 1.7e-08 34.6 16.0 1.7e-08 34.6 16.0 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein PD40 PF07676.12 gi|435849773|ref|YP_007301714.1| - 3.9e-09 36.2 9.3 0.24 11.4 0.5 6.8 6 1 0 6 6 6 3 WD40-like Beta Propeller Repeat DUF5050 PF16472.5 gi|435849773|ref|YP_007301714.1| - 0.0014 18.0 0.1 0.009 15.3 0.0 2.3 2 1 1 3 3 3 1 Domain of unknown function (DUF5050) DPPIV_N PF00930.21 gi|435849773|ref|YP_007301714.1| - 0.0064 15.3 1.8 0.35 9.6 0.1 3.8 2 1 3 5 5 5 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region T4-Gluco-transf PF09198.10 gi|435849773|ref|YP_007301714.1| - 0.058 13.0 0.1 1.5 8.5 0.0 2.8 2 0 0 2 2 2 0 Bacteriophage T4 beta-glucosyltransferase PD40 PF07676.12 gi|435849774|ref|YP_007301715.1| - 9.4e-06 25.4 4.4 0.76 9.8 0.0 4.7 4 0 0 4 4 4 3 WD40-like Beta Propeller Repeat ANAPC4_WD40 PF12894.7 gi|435849774|ref|YP_007301715.1| - 0.015 15.6 0.0 1.2 9.5 0.0 3.6 2 1 2 4 4 4 0 Anaphase-promoting complex subunit 4 WD40 domain DPPIV_N PF00930.21 gi|435849774|ref|YP_007301715.1| - 0.017 13.9 10.9 1.3 7.7 0.0 5.7 4 2 2 6 6 6 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region ABC2_membrane_2 PF12679.7 gi|435849775|ref|YP_007301716.1| - 2.8e-32 112.2 16.2 1.2e-31 110.1 16.2 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|435849775|ref|YP_007301716.1| - 7.7e-07 28.5 36.3 1.6e-05 24.2 36.3 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|435849775|ref|YP_007301716.1| - 0.0018 18.2 17.5 0.0018 18.2 17.5 3.0 2 1 1 3 3 3 2 ABC-2 family transporter protein DUF2921 PF11145.8 gi|435849775|ref|YP_007301716.1| - 0.0044 14.9 0.8 0.0059 14.5 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2921) Claudin_2 PF13903.6 gi|435849775|ref|YP_007301716.1| - 0.0059 16.4 0.3 0.0059 16.4 0.3 2.5 2 1 0 2 2 2 1 PMP-22/EMP/MP20/Claudin tight junction ABC2_membrane_5 PF13346.6 gi|435849775|ref|YP_007301716.1| - 0.17 11.4 36.7 0.095 12.2 29.7 2.8 2 1 1 3 3 3 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|435849776|ref|YP_007301717.1| - 1.9e-32 112.7 18.9 3.1e-31 108.7 18.9 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|435849776|ref|YP_007301717.1| - 1.5e-06 28.3 17.1 1.5e-06 28.3 17.1 2.5 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|435849776|ref|YP_007301717.1| - 0.00022 20.7 25.3 0.00022 20.7 25.3 2.3 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|435849776|ref|YP_007301717.1| - 0.0026 16.9 38.1 0.0041 16.3 35.8 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|435849776|ref|YP_007301717.1| - 0.51 9.9 36.8 2.8 7.5 29.6 3.5 2 1 1 3 3 3 0 ABC-2 family transporter protein PHO4 PF01384.20 gi|435849776|ref|YP_007301717.1| - 2.3 7.2 7.2 3.1 6.8 6.4 1.6 1 1 0 1 1 1 0 Phosphate transporter family PPC PF04151.15 gi|435849777|ref|YP_007301718.1| - 0.00052 21.0 0.3 0.00052 21.0 0.3 1.9 2 1 0 2 2 2 1 Bacterial pre-peptidase C-terminal domain DUF1295 PF06966.12 gi|435849780|ref|YP_007301721.1| - 0.11 12.0 2.4 3.9 6.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1295) SpoIIM PF01944.17 gi|435849781|ref|YP_007301722.1| - 2.3e-22 79.7 13.9 3e-22 79.4 13.9 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M RRM_occluded PF16842.5 gi|435849781|ref|YP_007301722.1| - 0.12 12.3 0.0 0.69 9.8 0.0 2.0 2 0 0 2 2 2 0 Occluded RNA-recognition motif DUF1495 PF07381.11 gi|435849784|ref|YP_007301725.1| - 6.7e-32 109.2 0.2 7.7e-32 109.0 0.2 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) Yip1 PF04893.17 gi|435849785|ref|YP_007301726.1| - 5.2e-27 94.6 14.3 6.5e-27 94.3 14.3 1.0 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.12 gi|435849785|ref|YP_007301726.1| - 0.018 14.8 17.8 0.057 13.2 17.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) DDE_Tnp_IS1 PF03400.13 gi|435849786|ref|YP_007301727.1| - 2.1e-14 54.0 0.2 4.1e-14 53.0 0.2 1.4 1 0 0 1 1 1 1 IS1 transposase Terminase_5 PF06056.12 gi|435849786|ref|YP_007301727.1| - 3.9e-08 33.0 0.0 9.2e-08 31.9 0.0 1.6 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.6 gi|435849786|ref|YP_007301727.1| - 2.1e-06 27.3 0.0 5.1e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|435849786|ref|YP_007301727.1| - 8e-05 22.7 0.0 0.00016 21.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|435849786|ref|YP_007301727.1| - 0.001 18.8 0.0 0.0023 17.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|435849786|ref|YP_007301727.1| - 0.0012 18.5 0.1 0.0032 17.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Zn_Tnp_IS1 PF03811.13 gi|435849786|ref|YP_007301727.1| - 0.0051 16.5 5.9 0.0087 15.8 5.9 1.4 1 0 0 1 1 1 1 InsA N-terminal domain Lact_bio_phlase PF09508.10 gi|435849786|ref|YP_007301727.1| - 0.0064 15.0 0.1 0.0087 14.5 0.1 1.1 1 0 0 1 1 1 1 Lacto-N-biose phosphorylase N-terminal TIM barrel domain Zn_Tnp_IS1595 PF12760.7 gi|435849786|ref|YP_007301727.1| - 0.0079 16.2 5.1 0.0079 16.2 5.1 1.9 2 0 0 2 2 2 1 Transposase zinc-ribbon domain HTH_50 PF18024.1 gi|435849786|ref|YP_007301727.1| - 0.01 15.4 0.0 0.024 14.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|435849786|ref|YP_007301727.1| - 0.015 15.3 0.3 0.045 13.8 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_Tnp_1 PF01527.20 gi|435849786|ref|YP_007301727.1| - 0.023 15.0 0.0 0.062 13.6 0.0 1.6 2 0 0 2 2 1 0 Transposase Lar_restr_allev PF14354.6 gi|435849786|ref|YP_007301727.1| - 0.026 14.9 0.6 0.054 13.9 0.6 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-Mss51 PF13824.6 gi|435849786|ref|YP_007301727.1| - 0.073 13.2 2.0 0.25 11.4 2.0 2.0 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Nudix_N_2 PF14803.6 gi|435849786|ref|YP_007301727.1| - 0.16 12.0 3.6 0.28 11.1 3.6 1.3 1 0 0 1 1 1 0 Nudix N-terminal HTH_Tnp_ISL3 PF13542.6 gi|435849786|ref|YP_007301727.1| - 0.2 11.1 0.0 0.38 10.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF3761 PF12587.8 gi|435849786|ref|YP_007301727.1| - 0.23 11.9 1.3 0.47 10.9 1.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3761) zf-TFIIB PF13453.6 gi|435849786|ref|YP_007301727.1| - 1.3 8.4 3.4 3.1 7.2 3.4 1.7 1 0 0 1 1 1 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.10 gi|435849786|ref|YP_007301727.1| - 1.5 9.0 4.1 5.9 7.1 0.2 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.20 gi|435849786|ref|YP_007301727.1| - 7.4 6.7 6.2 2.7 8.1 0.7 2.2 2 0 0 2 2 2 0 Rubredoxin zf-ISL3 PF14690.6 gi|435849786|ref|YP_007301727.1| - 7.4 7.3 12.1 2.1 9.1 2.6 2.5 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ABC_tran PF00005.27 gi|435849788|ref|YP_007301729.1| - 6.1e-35 120.7 0.0 8e-35 120.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|435849788|ref|YP_007301729.1| - 2.1e-09 37.1 0.4 2.6e-08 33.6 0.4 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|435849788|ref|YP_007301729.1| - 3.5e-08 33.6 0.0 0.0013 18.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|435849788|ref|YP_007301729.1| - 7.9e-06 25.8 0.2 0.012 15.3 0.6 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|435849788|ref|YP_007301729.1| - 2.9e-05 23.7 0.1 5.7e-05 22.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|435849788|ref|YP_007301729.1| - 6e-05 23.0 0.1 0.00015 21.7 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|435849788|ref|YP_007301729.1| - 0.00031 21.0 0.3 0.0095 16.2 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|435849788|ref|YP_007301729.1| - 0.0024 16.6 0.0 0.11 11.1 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|435849788|ref|YP_007301729.1| - 0.006 17.0 0.1 0.012 16.0 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|435849788|ref|YP_007301729.1| - 0.0092 16.1 0.1 0.016 15.3 0.1 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|435849788|ref|YP_007301729.1| - 0.013 16.0 2.8 0.033 14.7 2.8 1.8 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|435849788|ref|YP_007301729.1| - 0.015 15.2 0.2 5.5 6.9 0.1 2.3 2 0 0 2 2 2 0 NTPase AAA_24 PF13479.6 gi|435849788|ref|YP_007301729.1| - 0.02 14.6 0.2 0.14 11.8 0.1 2.1 2 1 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|435849788|ref|YP_007301729.1| - 0.021 13.9 0.3 0.056 12.5 0.0 1.8 2 1 0 2 2 2 0 Type II/IV secretion system protein IstB_IS21 PF01695.17 gi|435849788|ref|YP_007301729.1| - 0.021 14.5 0.0 0.83 9.4 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|435849788|ref|YP_007301729.1| - 0.035 14.0 0.0 0.18 11.7 0.0 2.0 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|435849788|ref|YP_007301729.1| - 0.042 14.4 0.6 0.41 11.2 0.4 2.2 1 1 0 2 2 2 0 AAA domain cobW PF02492.19 gi|435849788|ref|YP_007301729.1| - 0.043 13.4 0.1 0.42 10.2 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|435849788|ref|YP_007301729.1| - 0.049 13.7 0.0 0.089 12.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|435849788|ref|YP_007301729.1| - 0.049 13.2 0.1 0.33 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|435849788|ref|YP_007301729.1| - 0.062 13.2 0.2 0.6 10.0 0.1 2.1 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|435849788|ref|YP_007301729.1| - 0.089 12.9 0.1 0.15 12.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|435849788|ref|YP_007301729.1| - 0.091 11.9 0.0 0.096 11.8 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit RNA12 PF10443.9 gi|435849788|ref|YP_007301729.1| - 0.11 11.2 0.0 0.25 10.0 0.0 1.6 2 0 0 2 2 2 0 RNA12 protein AAA_30 PF13604.6 gi|435849788|ref|YP_007301729.1| - 0.14 11.9 0.1 0.57 9.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain MacB_PCD PF12704.7 gi|435849789|ref|YP_007301730.1| - 1.4e-25 90.8 0.1 1.4e-25 90.8 0.1 2.2 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|435849789|ref|YP_007301730.1| - 6.2e-13 49.0 6.5 6.2e-13 49.0 6.5 3.1 3 0 0 3 3 3 1 FtsX-like permease family LptF_LptG PF03739.14 gi|435849789|ref|YP_007301730.1| - 0.023 13.5 6.0 0.058 12.2 6.0 1.6 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG HTH_5 PF01022.20 gi|435849790|ref|YP_007301731.1| - 2.4e-05 24.1 0.1 0.12 12.3 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|435849790|ref|YP_007301731.1| - 0.0017 18.2 0.3 0.28 11.1 0.0 2.4 2 0 0 2 2 2 1 MarR family DUF2513 PF10711.9 gi|435849790|ref|YP_007301731.1| - 0.021 15.1 1.4 0.49 10.7 0.3 2.9 2 1 1 3 3 3 0 Hypothetical protein (DUF2513) TrmB PF01978.19 gi|435849790|ref|YP_007301731.1| - 0.036 14.0 0.2 1.3 8.9 0.0 2.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|435849790|ref|YP_007301731.1| - 0.11 12.4 1.5 0.68 9.9 0.2 2.4 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain LIM PF00412.22 gi|435849790|ref|YP_007301731.1| - 0.19 12.0 2.9 1.8 8.9 0.1 3.2 3 0 0 3 3 3 0 LIM domain Rad50_zn_hook PF04423.14 gi|435849790|ref|YP_007301731.1| - 0.28 11.0 3.6 16 5.4 0.0 4.1 4 0 0 4 4 4 0 Rad50 zinc hook motif DUF4451 PF14616.6 gi|435849790|ref|YP_007301731.1| - 0.71 10.1 3.8 4.9 7.4 2.4 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4451) z-alpha PF02295.17 gi|435849790|ref|YP_007301731.1| - 2.1 8.4 4.0 1.5 8.9 1.4 2.2 3 0 0 3 3 3 0 Adenosine deaminase z-alpha domain Radical_SAM PF04055.21 gi|435849792|ref|YP_007301733.1| - 4.7e-14 53.1 0.3 8.6e-14 52.3 0.3 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|435849792|ref|YP_007301733.1| - 2.1e-07 31.3 1.6 4.7e-07 30.2 0.4 2.0 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|435849792|ref|YP_007301733.1| - 2.9e-06 27.4 0.5 1e-05 25.7 0.0 2.1 3 0 0 3 3 3 1 4Fe-4S single cluster domain SEC-C PF02810.15 gi|435849793|ref|YP_007301734.1| - 1.8e-05 24.6 6.8 4e-05 23.4 6.8 1.6 1 0 0 1 1 1 1 SEC-C motif PuR_N PF09182.10 gi|435849793|ref|YP_007301734.1| - 0.14 12.1 0.0 0.31 11.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal DUF1699 PF08004.11 gi|435849794|ref|YP_007301735.1| - 1.3e-60 202.8 0.4 1.4e-60 202.6 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Mustang PF15682.5 gi|435849794|ref|YP_007301735.1| - 0.082 13.0 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Musculoskeletal, temporally activated-embryonic nuclear protein 1 AAA_14 PF13173.6 gi|435849795|ref|YP_007301736.1| - 4.1e-35 120.7 0.7 4.1e-35 120.7 0.7 2.5 4 0 0 4 4 4 1 AAA domain DUF4143 PF13635.6 gi|435849795|ref|YP_007301736.1| - 9.6e-13 48.4 0.3 1.9e-12 47.4 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|435849795|ref|YP_007301736.1| - 2.8e-06 27.4 0.7 0.00013 22.0 0.4 2.6 1 1 1 2 2 2 2 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|435849795|ref|YP_007301736.1| - 3e-06 27.6 0.0 0.00028 21.2 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|435849795|ref|YP_007301736.1| - 0.0005 20.5 0.1 0.31 11.4 0.1 2.4 1 1 1 2 2 2 2 AAA ATPase domain FtsK_SpoIIIE PF01580.18 gi|435849795|ref|YP_007301736.1| - 0.029 13.7 0.0 0.065 12.6 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family RNA_helicase PF00910.22 gi|435849795|ref|YP_007301736.1| - 0.036 14.5 0.0 0.16 12.4 0.0 2.1 2 1 0 2 2 2 0 RNA helicase AAA_7 PF12775.7 gi|435849795|ref|YP_007301736.1| - 0.044 13.3 0.0 0.091 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|435849795|ref|YP_007301736.1| - 0.057 13.0 0.0 0.096 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|435849795|ref|YP_007301736.1| - 0.07 13.6 0.0 0.18 12.3 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|435849795|ref|YP_007301736.1| - 0.29 10.1 1.5 1.4 7.9 0.0 2.3 2 1 1 3 3 3 0 Type II/IV secretion system protein Terminase_5 PF06056.12 gi|435849796|ref|YP_007301737.1| - 3.8e-06 26.7 0.0 6.4e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.6 gi|435849796|ref|YP_007301737.1| - 7.9e-06 25.5 0.0 1.4e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|435849796|ref|YP_007301737.1| - 0.00016 21.7 0.0 0.0003 20.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|435849796|ref|YP_007301737.1| - 0.0003 20.5 0.0 0.00067 19.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|435849796|ref|YP_007301737.1| - 0.0074 15.9 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Zn_Tnp_IS1595 PF12760.7 gi|435849796|ref|YP_007301737.1| - 0.018 15.0 7.2 0.028 14.4 7.2 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_29 PF13551.6 gi|435849796|ref|YP_007301737.1| - 0.018 15.0 0.5 0.078 13.0 0.0 2.2 3 0 0 3 3 3 0 Winged helix-turn helix Zn_Tnp_IS1 PF03811.13 gi|435849796|ref|YP_007301737.1| - 0.043 13.5 7.4 0.079 12.7 7.4 1.5 1 0 0 1 1 1 0 InsA N-terminal domain DUF1670 PF07900.11 gi|435849796|ref|YP_007301737.1| - 0.049 13.0 0.0 0.062 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) HTH_Tnp_1 PF01527.20 gi|435849796|ref|YP_007301737.1| - 0.052 13.9 0.0 0.086 13.2 0.0 1.3 1 0 0 1 1 1 0 Transposase TnsD PF15978.5 gi|435849796|ref|YP_007301737.1| - 0.054 12.5 0.4 0.1 11.6 0.4 1.5 1 1 0 1 1 1 0 Tn7-like transposition protein D HTH_50 PF18024.1 gi|435849796|ref|YP_007301737.1| - 0.09 12.4 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Tma16 PF11176.8 gi|435849796|ref|YP_007301737.1| - 0.095 12.6 0.0 0.16 11.8 0.0 1.4 1 1 0 1 1 1 0 Translation machinery-associated protein 16 DUF2387 PF09526.10 gi|435849796|ref|YP_007301737.1| - 0.13 12.5 0.7 0.21 11.8 0.7 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-Mss51 PF13824.6 gi|435849796|ref|YP_007301737.1| - 1.2 9.3 4.8 2.5 8.3 4.8 1.6 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2_11 PF16622.5 gi|435849796|ref|YP_007301737.1| - 5.7 6.8 7.2 0.28 11.0 1.4 1.8 2 0 0 2 2 1 0 zinc-finger C2H2-type DUF3797 PF12677.7 gi|435849796|ref|YP_007301737.1| - 10 6.1 8.7 27 4.7 8.7 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3797) GcrA PF07750.11 gi|435849797|ref|YP_007301738.1| - 0.0004 20.8 0.0 0.22 11.9 0.0 2.2 2 0 0 2 2 2 2 GcrA cell cycle regulator HTH_38 PF13936.6 gi|435849797|ref|YP_007301738.1| - 0.0098 15.6 0.0 18 5.2 0.0 3.3 3 0 0 3 3 3 1 Helix-turn-helix domain DUF285 PF03382.14 gi|435849797|ref|YP_007301738.1| - 0.024 14.4 0.1 1.9 8.3 0.0 2.1 2 0 0 2 2 2 0 Mycoplasma protein of unknown function, DUF285 HrcA_DNA-bdg PF03444.15 gi|435849797|ref|YP_007301738.1| - 0.15 11.7 0.2 33 4.2 0.0 3.0 3 0 0 3 3 3 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DDE_Tnp_1 PF01609.21 gi|435849798|ref|YP_007301739.1| - 2.5e-06 27.3 0.5 5.7e-06 26.1 0.3 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_IS1 PF03400.13 gi|435849800|ref|YP_007301741.1| - 7.7e-15 55.4 0.2 1.6e-14 54.4 0.2 1.4 1 0 0 1 1 1 1 IS1 transposase Terminase_5 PF06056.12 gi|435849800|ref|YP_007301741.1| - 3.9e-08 33.1 0.0 9.2e-08 31.9 0.0 1.7 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.6 gi|435849800|ref|YP_007301741.1| - 2.1e-06 27.4 0.0 5.1e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|435849800|ref|YP_007301741.1| - 7.9e-05 22.7 0.0 0.00016 21.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|435849800|ref|YP_007301741.1| - 0.00099 18.8 0.0 0.0023 17.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|435849800|ref|YP_007301741.1| - 0.0012 18.5 0.1 0.0032 17.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Zn_Tnp_IS1 PF03811.13 gi|435849800|ref|YP_007301741.1| - 0.005 16.5 5.9 0.0087 15.8 5.9 1.4 1 0 0 1 1 1 1 InsA N-terminal domain Lact_bio_phlase PF09508.10 gi|435849800|ref|YP_007301741.1| - 0.0057 15.1 0.1 0.0078 14.7 0.1 1.2 1 0 0 1 1 1 1 Lacto-N-biose phosphorylase N-terminal TIM barrel domain Zn_Tnp_IS1595 PF12760.7 gi|435849800|ref|YP_007301741.1| - 0.0079 16.2 5.1 0.0079 16.2 5.1 1.9 2 0 0 2 2 2 1 Transposase zinc-ribbon domain HTH_50 PF18024.1 gi|435849800|ref|YP_007301741.1| - 0.01 15.4 0.0 0.024 14.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|435849800|ref|YP_007301741.1| - 0.014 15.4 0.3 0.045 13.8 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_Tnp_1 PF01527.20 gi|435849800|ref|YP_007301741.1| - 0.019 15.3 0.0 0.05 13.9 0.0 1.7 2 0 0 2 2 1 0 Transposase Lar_restr_allev PF14354.6 gi|435849800|ref|YP_007301741.1| - 0.019 15.3 0.5 0.039 14.3 0.5 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-Mss51 PF13824.6 gi|435849800|ref|YP_007301741.1| - 0.08 13.1 2.1 0.27 11.4 2.1 1.9 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Nudix_N_2 PF14803.6 gi|435849800|ref|YP_007301741.1| - 0.15 12.0 3.6 0.28 11.1 3.6 1.3 1 0 0 1 1 1 0 Nudix N-terminal DUF3761 PF12587.8 gi|435849800|ref|YP_007301741.1| - 0.25 11.8 1.4 0.53 10.8 1.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3761) Zn-ribbon_8 PF09723.10 gi|435849800|ref|YP_007301741.1| - 1.3 9.2 4.2 4.8 7.4 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-TFIIB PF13453.6 gi|435849800|ref|YP_007301741.1| - 1.4 8.4 3.4 3.1 7.2 3.4 1.6 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-ISL3 PF14690.6 gi|435849800|ref|YP_007301741.1| - 7.7 7.3 12.1 2.1 9.1 2.6 2.5 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 L_protein_N PF15518.6 gi|435849801|ref|YP_007301742.1| - 0.0059 16.4 0.2 0.013 15.3 0.0 1.7 2 0 0 2 2 2 1 L protein N-terminus Exo5 PF09810.9 gi|435849801|ref|YP_007301742.1| - 0.017 14.6 0.0 0.36 10.3 0.1 2.0 1 1 1 2 2 2 0 Exonuclease V - a 5' deoxyribonuclease DUF4303 PF14136.6 gi|435849801|ref|YP_007301742.1| - 0.032 14.0 0.1 0.85 9.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4303) HSDR_N PF04313.14 gi|435849801|ref|YP_007301742.1| - 0.032 14.2 0.1 0.078 12.9 0.0 1.6 2 0 0 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) Helicase_C PF00271.31 gi|435849804|ref|YP_007301745.1| - 1.2e-13 51.4 0.0 4.7e-13 49.4 0.0 2.2 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|435849804|ref|YP_007301745.1| - 1.5e-13 50.2 0.0 2.5e-11 42.9 0.0 2.4 1 1 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|435849804|ref|YP_007301745.1| - 1.2e-07 31.9 0.1 7.4e-06 26.1 0.0 3.3 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|435849804|ref|YP_007301745.1| - 0.00019 21.2 0.0 0.0052 16.6 0.0 2.8 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_10 PF12846.7 gi|435849804|ref|YP_007301745.1| - 0.0039 16.2 0.1 0.026 13.5 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain DUF4391 PF14335.6 gi|435849805|ref|YP_007301746.1| - 4.5e-96 321.2 0.4 5.5e-96 321.0 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4391) DUF3883 PF13020.6 gi|435849806|ref|YP_007301747.1| - 0.19 11.8 3.2 1.3 9.1 3.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3883) N6_N4_Mtase PF01555.18 gi|435849807|ref|YP_007301748.1| - 1.1e-37 130.0 2.1 1.7e-37 129.4 2.1 1.3 1 0 0 1 1 1 1 DNA methylase Cons_hypoth95 PF03602.15 gi|435849807|ref|YP_007301748.1| - 0.059 13.0 0.1 0.32 10.6 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical protein 95 ResIII PF04851.15 gi|435849808|ref|YP_007301749.1| - 9.5e-14 51.8 0.0 3.5e-13 49.9 0.0 2.0 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|435849808|ref|YP_007301749.1| - 0.00035 20.4 0.0 0.00094 19.0 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase PhoH PF02562.16 gi|435849808|ref|YP_007301749.1| - 0.028 13.9 0.6 0.15 11.5 0.0 2.4 3 0 0 3 3 3 0 PhoH-like protein Mrr_cat PF04471.12 gi|435849809|ref|YP_007301750.1| - 6.1e-06 26.2 1.7 1.3e-05 25.2 0.1 2.4 3 0 0 3 3 3 1 Restriction endonuclease HSDR_N_2 PF13588.6 gi|435849809|ref|YP_007301750.1| - 0.0094 15.9 0.0 0.031 14.3 0.0 1.9 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Cauli_AT PF03233.13 gi|435849809|ref|YP_007301750.1| - 0.13 12.2 15.0 3 7.7 0.3 3.4 3 0 0 3 3 3 0 Aphid transmission protein DASH_Dam1 PF08653.10 gi|435849809|ref|YP_007301750.1| - 0.8 9.6 3.6 20 5.1 0.0 3.8 4 0 0 4 4 4 0 DASH complex subunit Dam1 YabA PF06156.13 gi|435849809|ref|YP_007301750.1| - 2.7 8.7 10.5 5 7.8 0.3 3.7 3 1 0 3 3 3 0 Initiation control protein YabA Laminin_II PF06009.12 gi|435849809|ref|YP_007301750.1| - 4.2 7.4 10.9 2.7 8.0 2.4 3.1 3 0 0 3 3 3 0 Laminin Domain II Fib_alpha PF08702.10 gi|435849809|ref|YP_007301750.1| - 5.3 7.2 11.8 1.4 9.1 1.0 3.1 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family Unstab_antitox PF09720.10 gi|435849810|ref|YP_007301751.1| - 0.12 12.5 0.0 0.29 11.2 0.0 1.6 1 1 1 2 2 2 0 Putative addiction module component ParE_toxin PF05016.15 gi|435849811|ref|YP_007301752.1| - 1.5e-11 44.8 0.0 1.7e-11 44.6 0.0 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|435849811|ref|YP_007301752.1| - 6.1e-05 22.9 0.1 8.9e-05 22.4 0.1 1.3 1 1 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system HATPase_c_3 PF13589.6 gi|435849813|ref|YP_007301754.1| - 0.0015 18.3 0.0 0.0053 16.6 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HNH_2 PF13391.6 gi|435849813|ref|YP_007301754.1| - 0.036 14.2 1.3 0.34 11.1 0.1 2.9 3 0 0 3 3 3 0 HNH endonuclease DUF386 PF04074.12 gi|435849813|ref|YP_007301754.1| - 0.19 11.6 2.2 0.21 11.5 0.2 2.1 2 0 0 2 2 2 0 YhcH/YjgK/YiaL Helicase_C PF00271.31 gi|435849814|ref|YP_007301755.1| - 4.6e-23 81.7 0.0 5.2e-22 78.3 0.0 2.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|435849814|ref|YP_007301755.1| - 5.2e-18 64.9 0.1 8.7e-18 64.2 0.1 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|435849814|ref|YP_007301755.1| - 2e-08 34.4 0.0 6e-08 32.9 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|435849814|ref|YP_007301755.1| - 3.7e-06 26.8 0.0 1.1e-05 25.3 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_34 PF13872.6 gi|435849814|ref|YP_007301755.1| - 0.00026 20.0 0.0 0.00046 19.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing NTP hydrolase pore-1 AAA_22 PF13401.6 gi|435849814|ref|YP_007301755.1| - 0.01 16.1 0.0 0.15 12.4 0.0 3.0 3 0 0 3 3 3 0 AAA domain SesA PF17107.5 gi|435849814|ref|YP_007301755.1| - 0.012 15.8 1.0 0.012 15.8 1.0 2.1 2 0 0 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Phage_Mu_Gam PF07352.12 gi|435849814|ref|YP_007301755.1| - 0.076 12.9 7.0 0.14 12.1 3.1 2.5 2 0 0 2 2 2 0 Bacteriophage Mu Gam like protein Anthrax_toxA PF03497.16 gi|435849815|ref|YP_007301756.1| - 0.095 12.8 10.1 0.11 12.6 9.0 1.8 1 1 1 2 2 2 0 Anthrax toxin LF subunit FtsX_ECD PF18075.1 gi|435849815|ref|YP_007301756.1| - 0.18 12.5 8.1 0.071 13.8 5.1 2.0 2 0 0 2 2 2 0 FtsX extracellular domain Lipase_GDSL PF00657.22 gi|435849815|ref|YP_007301756.1| - 0.25 11.3 3.9 0.63 10.0 0.6 2.2 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase HAUS-augmin3 PF14932.6 gi|435849815|ref|YP_007301756.1| - 0.59 9.7 21.5 0.098 12.2 16.1 1.9 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Fe_hyd_lg_C PF02906.14 gi|435849815|ref|YP_007301756.1| - 0.69 9.5 6.5 0.85 9.2 5.9 1.5 1 1 0 1 1 1 0 Iron only hydrogenase large subunit, C-terminal domain Cupin_8 PF13621.6 gi|435849815|ref|YP_007301756.1| - 1.2 8.8 5.6 1.8 8.2 5.6 1.4 1 1 0 1 1 1 0 Cupin-like domain UPF0242 PF06785.11 gi|435849815|ref|YP_007301756.1| - 3.6 7.6 30.0 0.56 10.3 20.8 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus SlyX PF04102.12 gi|435849815|ref|YP_007301756.1| - 8.5 7.1 9.0 1.3 9.7 3.8 2.5 3 1 0 3 3 3 0 SlyX UvrD-helicase PF00580.21 gi|435849816|ref|YP_007301757.1| - 4.6e-60 203.8 0.7 4.6e-60 203.8 0.7 3.2 3 1 0 3 3 3 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|435849816|ref|YP_007301757.1| - 1.4e-44 152.9 5.0 2.8e-44 152.0 5.0 1.5 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 gi|435849816|ref|YP_007301757.1| - 7.7e-37 127.6 0.0 1.5e-36 126.6 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.6 gi|435849816|ref|YP_007301757.1| - 8.9e-28 97.5 0.0 1e-26 94.0 0.0 2.6 3 0 0 3 3 3 1 AAA domain UvrD_C_2 PF13538.6 gi|435849816|ref|YP_007301757.1| - 4.4e-12 45.6 0.7 8.8e-06 25.5 0.1 2.6 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|435849816|ref|YP_007301757.1| - 1.5e-06 28.0 0.0 0.00011 22.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_12 PF13087.6 gi|435849816|ref|YP_007301757.1| - 3.4e-06 26.8 0.1 0.0025 17.5 0.0 3.5 2 1 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|435849816|ref|YP_007301757.1| - 1.4e-05 25.0 0.3 0.33 10.7 0.0 3.9 4 0 0 4 4 4 2 Viral (Superfamily 1) RNA helicase Cas_Cas4 PF01930.17 gi|435849816|ref|YP_007301757.1| - 0.023 14.8 0.1 0.023 14.8 0.1 3.6 4 1 1 5 5 5 0 Domain of unknown function DUF83 Dna2 PF08696.11 gi|435849816|ref|YP_007301757.1| - 0.027 14.3 0.1 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 DNA replication factor Dna2 TPR_1 PF00515.28 gi|435849817|ref|YP_007301758.1| - 7.5e-47 155.3 8.1 8.5e-07 28.5 0.0 8.2 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_2 PF07719.17 gi|435849817|ref|YP_007301758.1| - 3.5e-46 151.6 6.8 1.2e-05 25.1 0.0 8.2 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_8 PF13181.6 gi|435849817|ref|YP_007301758.1| - 1.3e-33 112.3 10.9 0.0011 19.0 0.3 8.2 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_17 PF13431.6 gi|435849817|ref|YP_007301758.1| - 1e-27 94.4 0.5 0.00018 21.7 0.0 8.2 7 1 1 8 8 8 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|435849817|ref|YP_007301758.1| - 2.6e-22 79.2 0.0 0.00012 22.6 0.0 6.1 1 1 4 6 6 6 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|435849817|ref|YP_007301758.1| - 1.3e-21 75.4 0.0 0.023 15.5 0.0 7.9 1 1 6 8 8 8 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|435849817|ref|YP_007301758.1| - 6.9e-21 73.7 5.4 0.00012 21.7 0.0 7.7 2 2 6 8 8 8 6 TPR repeat ANAPC3 PF12895.7 gi|435849817|ref|YP_007301758.1| - 3.7e-20 71.9 10.0 3.6e-08 33.5 0.2 4.5 2 2 3 5 5 5 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 gi|435849817|ref|YP_007301758.1| - 2.2e-19 69.5 11.6 0.00022 21.4 0.3 6.2 3 3 2 5 5 5 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|435849817|ref|YP_007301758.1| - 3e-17 62.9 0.0 0.00013 22.4 0.0 5.3 2 1 5 7 7 7 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|435849817|ref|YP_007301758.1| - 1.8e-15 55.8 0.1 0.64 10.2 0.0 7.1 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|435849817|ref|YP_007301758.1| - 2.8e-15 56.2 0.0 0.0043 17.2 0.0 5.8 2 1 4 7 7 7 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|435849817|ref|YP_007301758.1| - 1.3e-10 41.2 2.1 1.3 9.9 0.0 6.9 7 0 0 7 7 6 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|435849817|ref|YP_007301758.1| - 5.5e-09 36.0 5.8 0.061 13.4 0.0 6.4 6 1 1 7 7 7 1 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.6 gi|435849817|ref|YP_007301758.1| - 3.2e-08 33.2 3.2 0.2 11.6 0.0 6.3 6 1 1 7 7 7 1 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|435849817|ref|YP_007301758.1| - 9.4e-06 25.6 5.6 0.011 15.8 0.6 3.6 1 1 1 3 3 3 2 Putative TPR-like repeat NARP1 PF12569.8 gi|435849817|ref|YP_007301758.1| - 5.3e-05 22.3 1.2 0.02 13.8 0.0 3.2 1 1 1 3 3 3 1 NMDA receptor-regulated protein 1 TOM20_plant PF06552.12 gi|435849817|ref|YP_007301758.1| - 6.8e-05 22.7 0.2 1.1 9.0 0.0 3.8 3 2 1 4 4 4 2 Plant specific mitochondrial import receptor subunit TOM20 DUF3808 PF10300.9 gi|435849817|ref|YP_007301758.1| - 0.00014 20.8 4.6 0.0013 17.6 0.5 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF3808) DUF5588 PF17826.1 gi|435849817|ref|YP_007301758.1| - 0.00015 20.8 0.9 0.0032 16.4 0.1 2.4 2 1 0 2 2 2 1 Family of unknown function (DUF5588) DUF4919 PF16266.5 gi|435849817|ref|YP_007301758.1| - 0.00015 21.8 0.8 0.87 9.5 0.1 3.4 2 1 1 3 3 3 2 Domain of unknown function (DUF4919) TPR_3 PF07720.12 gi|435849817|ref|YP_007301758.1| - 0.00015 21.7 4.3 5.6 7.1 0.0 4.6 5 0 0 5 5 4 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|435849817|ref|YP_007301758.1| - 0.00039 19.7 0.5 3.5 6.7 0.0 4.4 1 1 2 3 3 3 1 Tetratricopeptide repeat Paf67 PF10255.9 gi|435849817|ref|YP_007301758.1| - 0.0015 17.7 0.0 0.14 11.1 0.0 3.0 2 1 1 3 3 3 1 RNA polymerase I-associated factor PAF67 TPR_20 PF14561.6 gi|435849817|ref|YP_007301758.1| - 0.0015 18.8 0.4 20 5.6 0.0 4.6 3 2 3 6 6 6 0 Tetratricopeptide repeat PknG_TPR PF16918.5 gi|435849817|ref|YP_007301758.1| - 0.0016 17.2 0.0 0.029 13.1 0.0 2.3 2 1 0 2 2 2 1 Protein kinase G tetratricopeptide repeat PPR PF01535.20 gi|435849817|ref|YP_007301758.1| - 0.0049 17.0 7.3 39 4.8 0.0 6.4 8 0 0 8 8 6 0 PPR repeat HrpB1_HrpK PF09613.10 gi|435849817|ref|YP_007301758.1| - 0.011 15.4 0.0 15 5.2 0.0 3.5 2 2 1 3 3 3 0 Bacterial type III secretion protein (HrpB1_HrpK) MIT PF04212.18 gi|435849817|ref|YP_007301758.1| - 0.032 14.3 8.9 32 4.7 0.1 5.7 4 2 0 6 6 5 0 MIT (microtubule interacting and transport) domain TPR_4 PF07721.14 gi|435849817|ref|YP_007301758.1| - 0.14 12.8 0.2 82 4.3 0.0 3.6 3 1 1 4 4 2 0 Tetratricopeptide repeat Hfq PF17209.3 gi|435849818|ref|YP_007301759.1| - 0.00078 19.0 0.5 0.048 13.3 0.1 2.7 2 0 0 2 2 2 1 Hfq protein CSD PF00313.22 gi|435849818|ref|YP_007301759.1| - 0.0094 15.8 0.0 0.028 14.3 0.0 1.9 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain ISP3_C PF18045.1 gi|435849818|ref|YP_007301759.1| - 0.076 12.9 0.0 0.22 11.4 0.0 1.9 1 0 0 1 1 1 0 ISP3 C-terminal UvrD-helicase PF00580.21 gi|435849818|ref|YP_007301759.1| - 0.19 11.2 7.6 0.13 11.8 5.4 1.6 1 1 1 2 2 2 0 UvrD/REP helicase N-terminal domain HTH_5 PF01022.20 gi|435849819|ref|YP_007301760.1| - 9.4e-06 25.4 0.1 2.2e-05 24.3 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family DUF1887 PF09002.11 gi|435849819|ref|YP_007301760.1| - 9.8e-06 24.5 0.0 1.4e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) TrmB PF01978.19 gi|435849819|ref|YP_007301760.1| - 3.5e-05 23.6 0.0 8.5e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Cas_APE2256 PF09651.10 gi|435849819|ref|YP_007301760.1| - 0.0001 22.2 0.0 0.00017 21.5 0.0 1.5 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) HTH_24 PF13412.6 gi|435849819|ref|YP_007301760.1| - 0.00032 20.2 0.0 0.00055 19.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Cas_Cas02710 PF09670.10 gi|435849819|ref|YP_007301760.1| - 0.0015 17.4 0.1 0.002 17.0 0.1 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) HTH_20 PF12840.7 gi|435849819|ref|YP_007301760.1| - 0.0059 16.6 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|435849819|ref|YP_007301760.1| - 0.02 15.2 0.0 0.044 14.1 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.12 gi|435849819|ref|YP_007301760.1| - 0.022 14.7 0.0 0.05 13.6 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_45 PF14947.6 gi|435849819|ref|YP_007301760.1| - 0.026 14.5 0.1 0.045 13.7 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Cas_NE0113 PF09623.10 gi|435849819|ref|YP_007301760.1| - 0.034 13.8 0.2 0.11 12.1 0.2 1.8 1 1 0 1 1 1 0 CRISPR-associated protein NE0113 (Cas_NE0113) HTH_CodY PF08222.11 gi|435849819|ref|YP_007301760.1| - 0.04 13.5 0.0 0.075 12.6 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_34 PF13601.6 gi|435849819|ref|YP_007301760.1| - 0.049 13.8 0.1 0.21 11.8 0.1 2.1 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|435849819|ref|YP_007301760.1| - 0.07 13.1 0.0 0.16 11.9 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Glucosamine_iso PF01182.20 gi|435849819|ref|YP_007301760.1| - 0.082 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase MarR PF01047.22 gi|435849819|ref|YP_007301760.1| - 0.12 12.3 0.2 0.28 11.1 0.0 1.7 2 0 0 2 2 2 0 MarR family HrcA_DNA-bdg PF03444.15 gi|435849819|ref|YP_007301760.1| - 0.12 12.0 0.1 0.33 10.6 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Disaggr_repeat PF06848.11 gi|435849820|ref|YP_007301761.1| - 5.1e-188 619.3 18.0 5.4e-95 316.2 5.2 2.3 2 0 0 2 2 2 2 Disaggregatase related repeat PKD PF00801.20 gi|435849820|ref|YP_007301761.1| - 5.4e-08 32.6 5.5 5.4e-08 32.6 5.5 2.9 4 0 0 4 4 4 1 PKD domain Glyco_hydro_39 PF01229.17 gi|435849820|ref|YP_007301761.1| - 7.7e-08 31.4 0.8 1.2e-07 30.7 0.8 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 39 TGFb_propeptide PF00688.18 gi|435849820|ref|YP_007301761.1| - 4.7e-07 29.8 0.0 1.3 8.7 0.0 4.1 4 0 0 4 4 4 2 TGF-beta propeptide Ub-RnfH PF03658.14 gi|435849820|ref|YP_007301761.1| - 0.03 14.7 0.1 15 6.0 0.0 2.5 2 0 0 2 2 2 0 RnfH family Ubiquitin Acylphosphatase PF00708.18 gi|435849822|ref|YP_007301763.1| - 0.12 12.8 0.3 1.7 9.1 0.0 2.5 1 1 2 3 3 3 0 Acylphosphatase UPF0122 PF04297.14 gi|435849823|ref|YP_007301764.1| - 0.97 9.7 11.8 0.3 11.3 7.5 2.1 1 1 1 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like FGE-sulfatase PF03781.16 gi|435849824|ref|YP_007301765.1| - 9.7e-45 153.2 5.7 2.3e-44 151.9 5.7 1.7 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 DUF739 PF05339.11 gi|435849824|ref|YP_007301765.1| - 0.015 15.4 0.2 0.033 14.3 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF739) FYVE PF01363.21 gi|435849824|ref|YP_007301765.1| - 0.021 14.9 10.0 0.021 14.9 10.0 2.1 2 0 0 2 2 2 0 FYVE zinc finger zf-RING_2 PF13639.6 gi|435849824|ref|YP_007301765.1| - 0.024 15.0 9.6 0.065 13.6 9.6 1.8 1 0 0 1 1 1 0 Ring finger domain Ninjurin PF04923.12 gi|435849824|ref|YP_007301765.1| - 0.059 13.3 0.8 0.14 12.1 0.8 1.6 1 0 0 1 1 1 0 Ninjurin DZR PF12773.7 gi|435849824|ref|YP_007301765.1| - 1.5 8.9 10.0 2.5 8.2 1.4 2.5 1 1 1 2 2 2 0 Double zinc ribbon Prok-RING_1 PF14446.6 gi|435849824|ref|YP_007301765.1| - 2 8.4 8.6 0.32 10.9 4.5 1.9 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-B_box PF00643.24 gi|435849824|ref|YP_007301765.1| - 2.2 8.5 11.3 1.7 8.9 7.3 2.4 2 0 0 2 2 2 0 B-box zinc finger YdjO PF14169.6 gi|435849824|ref|YP_007301765.1| - 5.4 6.8 11.2 0.2 11.4 0.9 3.0 3 0 0 3 3 3 0 Cold-inducible protein YdjO Disaggr_repeat PF06848.11 gi|435849825|ref|YP_007301766.1| - 4.3e-282 925.7 32.5 8.7e-95 315.5 5.2 3.6 3 0 0 3 3 3 3 Disaggregatase related repeat LVIVD PF08309.11 gi|435849825|ref|YP_007301766.1| - 1.8e-126 411.2 137.5 7.9e-15 53.9 2.3 15.7 14 3 0 14 14 14 14 LVIVD repeat PKD PF00801.20 gi|435849825|ref|YP_007301766.1| - 8.5e-39 131.3 48.3 3.5e-11 42.8 4.5 6.2 5 0 0 5 5 5 4 PKD domain Beta_propel PF09826.9 gi|435849825|ref|YP_007301766.1| - 2.7e-12 46.3 26.6 2.5e-05 23.4 0.5 7.8 1 1 4 5 5 5 4 Beta propeller domain TGFb_propeptide PF00688.18 gi|435849825|ref|YP_007301766.1| - 1.3e-10 41.4 0.0 4.6 6.9 0.0 6.8 7 0 0 7 7 7 3 TGF-beta propeptide FIVAR PF07554.13 gi|435849825|ref|YP_007301766.1| - 2.1e-08 34.8 41.3 8.3e-07 29.7 14.9 3.8 3 0 0 3 3 2 2 FIVAR domain Y_Y_Y PF07495.13 gi|435849825|ref|YP_007301766.1| - 3.5e-07 30.1 12.6 0.29 11.1 0.3 5.4 5 0 0 5 5 5 3 Y_Y_Y domain Ub-RnfH PF03658.14 gi|435849825|ref|YP_007301766.1| - 0.00021 21.6 1.7 12 6.4 0.0 4.3 3 0 0 3 3 3 1 RnfH family Ubiquitin DUF4625 PF15418.6 gi|435849825|ref|YP_007301766.1| - 0.00059 20.1 12.8 6.9 6.9 0.1 6.3 4 3 2 6 6 6 1 Domain of unknown function (DUF4625) DUF5011 PF16403.5 gi|435849825|ref|YP_007301766.1| - 0.069 13.3 41.1 0.72 10.0 0.6 6.8 5 0 0 5 5 5 0 Domain of unknown function (DUF5011) He_PIG PF05345.12 gi|435849825|ref|YP_007301766.1| - 0.15 12.3 52.2 1.1 9.5 2.0 8.5 7 0 0 7 7 7 0 Putative Ig domain DASH_Spc34 PF08657.10 gi|435849825|ref|YP_007301766.1| - 0.25 11.1 0.8 0.46 10.2 0.8 1.3 1 0 0 1 1 1 0 DASH complex subunit Spc34 ig PF00047.25 gi|435849825|ref|YP_007301766.1| - 0.46 10.7 17.6 0.2 11.9 0.9 4.2 4 0 0 4 4 4 0 Immunoglobulin domain TcfC PF16967.5 gi|435849825|ref|YP_007301766.1| - 1.1 8.8 8.8 9.6 5.8 0.1 4.6 4 0 0 4 4 4 0 E-set like domain SUKH_6 PF14568.6 gi|435849825|ref|YP_007301766.1| - 7.3 7.0 5.6 15 6.1 0.1 3.9 5 0 0 5 5 4 0 SMI1-KNR4 cell-wall LVIVD PF08309.11 gi|435849826|ref|YP_007301767.1| - 1.5e-10 40.2 1.0 9.3e-07 28.1 0.1 2.4 2 0 0 2 2 2 2 LVIVD repeat Disaggr_repeat PF06848.11 gi|435849827|ref|YP_007301768.1| - 1.4e-187 617.9 17.8 2.1e-94 314.3 5.7 2.5 2 0 0 2 2 2 2 Disaggregatase related repeat PKD PF00801.20 gi|435849827|ref|YP_007301768.1| - 1.9e-10 40.4 4.3 1.9e-10 40.4 4.3 2.3 3 0 0 3 3 3 1 PKD domain TGFb_propeptide PF00688.18 gi|435849827|ref|YP_007301768.1| - 4.2e-05 23.4 0.0 7.8 6.2 0.0 4.1 4 0 0 4 4 4 1 TGF-beta propeptide Colicin_E5 PF12106.8 gi|435849827|ref|YP_007301768.1| - 0.0022 18.3 9.7 7.9 6.9 0.1 5.9 5 1 1 6 6 6 1 Colicin E5 ribonuclease domain DERM PF14704.6 gi|435849827|ref|YP_007301768.1| - 0.004 17.6 5.1 0.83 10.1 1.1 3.7 1 1 4 5 5 5 2 Dermatopontin Y_Y_Y PF07495.13 gi|435849827|ref|YP_007301768.1| - 0.0072 16.3 0.0 0.026 14.4 0.0 2.1 1 0 0 1 1 1 1 Y_Y_Y domain DUF4106 PF13388.6 gi|435849827|ref|YP_007301768.1| - 0.057 12.7 0.3 0.12 11.5 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4106) Ub-RnfH PF03658.14 gi|435849827|ref|YP_007301768.1| - 0.059 13.7 0.1 22 5.5 0.0 2.5 2 0 0 2 2 2 0 RnfH family Ubiquitin YtkA PF13115.6 gi|435849827|ref|YP_007301768.1| - 0.073 13.7 0.6 0.33 11.6 0.6 2.1 1 0 0 1 1 1 0 YtkA-like Calsarcin PF05556.11 gi|435849827|ref|YP_007301768.1| - 0.084 12.4 0.0 18 4.8 0.0 2.5 2 0 0 2 2 2 0 Calcineurin-binding protein (Calsarcin) DUF4625 PF15418.6 gi|435849827|ref|YP_007301768.1| - 0.14 12.4 0.4 1 9.6 0.2 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4625) DUF5122 PF17164.4 gi|435849827|ref|YP_007301768.1| - 0.53 10.6 16.1 22 5.4 0.0 5.4 4 0 0 4 4 4 0 Domain of unknown function (DUF5122) beta-propeller Y1_Tnp PF01797.16 gi|435849828|ref|YP_007301769.1| - 1.2e-40 138.4 0.4 1.3e-40 138.2 0.4 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 gi|435849829|ref|YP_007301770.1| - 4.5e-24 84.2 0.1 1.1e-23 82.9 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|435849829|ref|YP_007301770.1| - 8e-22 77.7 0.4 1.6e-21 76.7 0.4 1.4 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|435849829|ref|YP_007301770.1| - 4.3e-15 54.9 0.9 9.3e-15 53.8 0.9 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|435849829|ref|YP_007301770.1| - 0.00071 19.5 1.4 0.0012 18.9 0.5 1.8 2 0 0 2 2 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|435849829|ref|YP_007301770.1| - 0.011 15.1 1.6 0.93 9.0 0.1 2.7 2 0 0 2 2 2 0 zinc-ribbon domain RuvC_1 PF18516.1 gi|435849829|ref|YP_007301770.1| - 0.012 14.8 0.2 0.018 14.2 0.2 1.3 1 0 0 1 1 1 0 RuvC nuclease domain zf-NADH-PPase PF09297.11 gi|435849829|ref|YP_007301770.1| - 0.012 15.3 0.6 0.025 14.3 0.6 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain FYVE PF01363.21 gi|435849829|ref|YP_007301770.1| - 0.049 13.8 1.2 0.08 13.1 0.2 1.9 2 0 0 2 2 2 0 FYVE zinc finger DUF1451 PF07295.11 gi|435849829|ref|YP_007301770.1| - 0.08 13.0 0.4 0.17 11.9 0.4 1.6 1 0 0 1 1 1 0 Zinc-ribbon containing domain TF_Zn_Ribbon PF08271.12 gi|435849829|ref|YP_007301770.1| - 0.23 11.0 1.7 2 8.0 1.8 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding Vps36-NZF-N PF16988.5 gi|435849829|ref|YP_007301770.1| - 0.31 10.4 3.8 4.7 6.7 0.2 3.2 2 1 1 3 3 3 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-RING_7 PF02591.15 gi|435849829|ref|YP_007301770.1| - 0.99 9.6 3.5 15 5.9 3.5 2.6 1 1 0 1 1 1 0 C4-type zinc ribbon domain C1_2 PF03107.16 gi|435849829|ref|YP_007301770.1| - 2.5 8.5 4.6 0.62 10.4 0.1 2.3 3 0 0 3 3 3 0 C1 domain DUF1610 PF07754.11 gi|435849829|ref|YP_007301770.1| - 7.4 6.6 9.9 18 5.4 7.1 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) DUF772 PF05598.11 gi|435849830|ref|YP_007301771.1| - 1.5e-19 69.8 0.1 3.5e-19 68.6 0.0 1.7 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|435849830|ref|YP_007301771.1| - 3e-17 63.0 0.2 5.9e-17 62.0 0.2 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|435849830|ref|YP_007301771.1| - 6.3e-06 26.3 0.1 1.3e-05 25.2 0.1 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|435849830|ref|YP_007301771.1| - 0.0032 17.1 0.1 0.0066 16.1 0.1 1.5 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.6 gi|435849830|ref|YP_007301771.1| - 0.032 14.5 0.1 0.065 13.5 0.1 1.5 1 0 0 1 1 1 0 Transposase DDE domain FGE-sulfatase PF03781.16 gi|435849831|ref|YP_007301772.1| - 1.3e-54 185.5 8.4 9.8e-54 182.7 8.4 2.0 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 NTP_transf_9 PF04248.12 gi|435849831|ref|YP_007301772.1| - 0.16 11.9 1.5 0.55 10.2 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF427) Trehalose_PPase PF02358.16 gi|435849832|ref|YP_007301773.1| - 0.042 13.0 0.1 0.048 12.8 0.1 1.1 1 0 0 1 1 1 0 Trehalose-phosphatase ATPase_2 PF01637.18 gi|435849833|ref|YP_007301774.1| - 0.0012 18.8 0.0 0.0018 18.2 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|435849833|ref|YP_007301774.1| - 0.0026 17.1 0.0 0.92 8.8 0.0 2.2 2 0 0 2 2 2 2 Zeta toxin AAA_33 PF13671.6 gi|435849833|ref|YP_007301774.1| - 0.0034 17.6 0.0 0.0061 16.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|435849833|ref|YP_007301774.1| - 0.0047 16.7 0.0 0.0062 16.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|435849833|ref|YP_007301774.1| - 0.0052 16.8 0.0 0.012 15.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|435849833|ref|YP_007301774.1| - 0.014 15.9 0.0 0.021 15.4 0.0 1.3 1 0 0 1 1 1 0 ABC transporter ATP_bind_1 PF03029.17 gi|435849833|ref|YP_007301774.1| - 0.028 14.2 0.0 0.044 13.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_23 PF13476.6 gi|435849833|ref|YP_007301774.1| - 0.036 14.6 0.0 0.063 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|435849833|ref|YP_007301774.1| - 0.037 13.6 0.0 0.058 13.0 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.6 gi|435849833|ref|YP_007301774.1| - 0.039 13.7 0.0 0.078 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|435849833|ref|YP_007301774.1| - 0.048 14.2 0.0 0.095 13.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|435849833|ref|YP_007301774.1| - 0.064 11.9 0.0 0.076 11.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|435849833|ref|YP_007301774.1| - 0.15 12.3 0.0 0.27 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|435849833|ref|YP_007301774.1| - 0.15 11.9 0.0 0.27 11.2 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Arf PF00025.21 gi|435849833|ref|YP_007301774.1| - 0.19 11.2 0.0 0.36 10.2 0.0 1.5 1 0 0 1 1 1 0 ADP-ribosylation factor family AAA_21 PF13304.6 gi|435849833|ref|YP_007301774.1| - 0.24 11.1 4.0 0.32 10.7 0.5 2.2 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system LVIVD PF08309.11 gi|435849834|ref|YP_007301775.1| - 7.5e-34 114.8 31.4 3.1e-11 42.4 0.6 7.9 7 0 0 7 7 7 7 LVIVD repeat LGFP PF08310.11 gi|435849834|ref|YP_007301775.1| - 2.4e-25 88.8 15.3 0.0026 18.3 0.0 8.7 8 0 0 8 8 8 7 LGFP repeat TPR_1 PF00515.28 gi|435849835|ref|YP_007301776.1| - 9.1e-35 117.1 2.9 1.6e-09 37.2 0.0 5.3 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|435849835|ref|YP_007301776.1| - 2.4e-32 110.4 4.6 8.1e-12 44.6 1.9 4.3 3 1 1 4 4 4 4 TPR repeat TPR_2 PF07719.17 gi|435849835|ref|YP_007301776.1| - 3.1e-27 92.5 6.7 2.3e-08 33.5 0.0 5.9 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|435849835|ref|YP_007301776.1| - 3.8e-27 92.2 5.0 1.5e-05 24.8 0.0 5.4 5 1 0 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|435849835|ref|YP_007301776.1| - 1.1e-26 91.3 2.5 1.8e-08 34.1 0.1 4.9 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|435849835|ref|YP_007301776.1| - 1.2e-18 67.5 0.0 5.1e-07 30.2 0.1 3.3 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|435849835|ref|YP_007301776.1| - 4.6e-18 64.4 0.1 0.00012 22.6 0.0 4.5 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|435849835|ref|YP_007301776.1| - 1.9e-17 63.5 0.2 1.8e-08 34.8 0.1 3.3 2 1 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|435849835|ref|YP_007301776.1| - 9.6e-13 48.2 1.6 0.00033 20.9 0.1 3.8 2 2 1 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|435849835|ref|YP_007301776.1| - 5.4e-10 39.3 0.0 0.00026 21.4 0.0 4.8 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_9 PF13371.6 gi|435849835|ref|YP_007301776.1| - 2.8e-09 37.0 0.0 0.0012 18.9 0.0 2.9 1 1 2 3 3 3 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|435849835|ref|YP_007301776.1| - 1.1e-07 32.0 0.0 0.0054 16.9 0.0 2.2 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|435849835|ref|YP_007301776.1| - 1.6e-07 30.8 1.7 0.1 12.7 0.0 4.9 5 1 0 5 5 5 1 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|435849835|ref|YP_007301776.1| - 5.9e-07 30.0 0.1 0.026 15.0 0.0 2.6 1 1 2 3 3 3 2 Alkyl sulfatase dimerisation PPTA PF01239.22 gi|435849835|ref|YP_007301776.1| - 2.4e-06 27.1 0.3 0.47 10.3 0.0 3.5 3 0 0 3 3 3 2 Protein prenyltransferase alpha subunit repeat NARP1 PF12569.8 gi|435849835|ref|YP_007301776.1| - 6.8e-06 25.3 0.5 0.0032 16.5 0.0 2.3 1 1 2 3 3 3 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|435849835|ref|YP_007301776.1| - 7e-06 26.0 0.0 0.19 11.9 0.0 3.0 2 1 0 2 2 2 2 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.6 gi|435849835|ref|YP_007301776.1| - 0.00066 19.5 0.7 18 5.4 0.0 4.8 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_15 PF13429.6 gi|435849835|ref|YP_007301776.1| - 0.0008 18.7 0.1 0.47 9.6 0.1 2.4 1 1 1 3 3 3 2 Tetratricopeptide repeat BTAD PF03704.17 gi|435849835|ref|YP_007301776.1| - 0.0019 18.6 0.1 0.29 11.6 0.0 2.7 1 1 2 3 3 3 1 Bacterial transcriptional activator domain TPR_4 PF07721.14 gi|435849835|ref|YP_007301776.1| - 0.0022 18.4 0.0 2 9.2 0.0 2.9 3 0 0 3 3 2 1 Tetratricopeptide repeat FAT PF02259.23 gi|435849835|ref|YP_007301776.1| - 0.0032 16.7 1.3 0.0054 16.0 0.6 1.8 1 1 0 1 1 1 1 FAT domain ANAPC5 PF12862.7 gi|435849835|ref|YP_007301776.1| - 0.004 17.2 0.1 1.5 9.0 0.0 3.1 2 1 1 3 3 3 1 Anaphase-promoting complex subunit 5 RPN7 PF10602.9 gi|435849835|ref|YP_007301776.1| - 0.0058 16.3 0.5 0.048 13.4 0.2 2.5 2 2 1 3 3 3 1 26S proteasome subunit RPN7 ChAPs PF09295.10 gi|435849835|ref|YP_007301776.1| - 0.098 11.6 0.2 0.72 8.8 0.0 1.9 2 0 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) TPR_20 PF14561.6 gi|435849835|ref|YP_007301776.1| - 0.14 12.5 0.1 3 8.2 0.0 2.5 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|435849835|ref|YP_007301776.1| - 0.16 11.3 0.0 0.62 9.4 0.0 1.8 1 1 1 2 2 2 0 MalT-like TPR region DUF1510 PF07423.11 gi|435849835|ref|YP_007301776.1| - 0.18 11.9 3.6 7.5 6.8 0.0 3.6 1 1 3 4 4 4 0 Domain of unknown function (DUF1510) TOM20_plant PF06552.12 gi|435849835|ref|YP_007301776.1| - 3.5 7.3 10.5 0.29 10.9 0.1 3.3 2 1 2 4 4 3 0 Plant specific mitochondrial import receptor subunit TOM20 Oxidored_q5_N PF01059.17 gi|435849836|ref|YP_007301777.1| - 0.044 13.9 4.4 0.073 13.2 4.4 1.4 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus CDC48_N PF02359.18 gi|435849836|ref|YP_007301777.1| - 0.072 13.3 0.0 9.1 6.5 0.0 3.0 3 0 0 3 3 3 0 Cell division protein 48 (CDC48), N-terminal domain AAA_15 PF13175.6 gi|435849837|ref|YP_007301778.1| - 7e-44 151.0 21.9 7e-44 151.0 21.9 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 gi|435849837|ref|YP_007301778.1| - 1.3e-17 64.6 2.4 1.3e-17 64.6 2.4 3.4 3 1 0 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system DUF2813 PF11398.8 gi|435849837|ref|YP_007301778.1| - 1.3e-10 41.1 0.9 7.6e-08 32.0 0.2 2.8 3 0 0 3 3 3 2 Protein of unknown function (DUF2813) AAA_23 PF13476.6 gi|435849837|ref|YP_007301778.1| - 2.3e-10 41.3 8.3 2.3e-10 41.3 8.3 3.0 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|435849837|ref|YP_007301778.1| - 6.6e-10 38.8 5.0 1.2e-09 38.0 0.2 2.8 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|435849837|ref|YP_007301778.1| - 3.5e-05 23.5 0.0 8e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|435849837|ref|YP_007301778.1| - 0.00015 21.4 0.4 0.00042 20.0 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain HEAT_2 PF13646.6 gi|435849838|ref|YP_007301779.1| - 1.4e-14 54.2 0.0 0.0052 17.2 0.0 4.8 4 0 0 4 4 4 3 HEAT repeats HEAT PF02985.22 gi|435849838|ref|YP_007301779.1| - 0.0019 18.3 2.4 27 5.4 0.0 5.9 7 0 0 7 7 7 1 HEAT repeat Pex19 PF04614.12 gi|435849838|ref|YP_007301779.1| - 0.73 9.6 10.1 4.5 7.0 0.2 2.3 1 1 0 2 2 2 0 Pex19 protein family DUF948 PF06103.11 gi|435849838|ref|YP_007301779.1| - 1.4 9.3 8.2 3.5 8.0 5.3 2.9 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) PMC2NT PF08066.12 gi|435849838|ref|YP_007301779.1| - 5.2 7.8 6.8 12 6.6 0.3 3.2 2 0 0 2 2 2 0 PMC2NT (NUC016) domain MCPsignal PF00015.21 gi|435849838|ref|YP_007301779.1| - 5.3 6.8 8.8 6.4 6.6 6.5 2.2 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain ComZ PF10815.8 gi|435849839|ref|YP_007301780.1| - 0.081 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 ComZ RVT_1 PF00078.27 gi|435849840|ref|YP_007301781.1| - 6.7e-42 143.5 0.1 1.3e-41 142.5 0.1 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) RVT_N PF13655.6 gi|435849840|ref|YP_007301781.1| - 1.5e-31 108.5 7.8 3.1e-31 107.5 7.8 1.6 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase GIIM PF08388.11 gi|435849840|ref|YP_007301781.1| - 5.5e-21 74.4 5.1 1.9e-20 72.7 5.1 2.0 1 0 0 1 1 1 1 Group II intron, maturase-specific domain Poxvirus_B22R_N PF13169.6 gi|435849841|ref|YP_007301782.1| - 0.024 15.1 0.0 0.027 14.9 0.0 1.1 1 0 0 1 1 1 0 Poxvirus B22R protein N-terminal Disaggr_repeat PF06848.11 gi|435849842|ref|YP_007301783.1| - 1.6e-279 917.4 32.5 3e-94 313.8 5.5 3.6 3 0 0 3 3 3 3 Disaggregatase related repeat PKD PF00801.20 gi|435849842|ref|YP_007301783.1| - 1.3e-58 194.8 63.9 3.5e-13 49.2 5.3 7.9 8 0 0 8 8 7 6 PKD domain NHL PF01436.21 gi|435849842|ref|YP_007301783.1| - 3.5e-15 55.2 14.5 7.1e-06 25.8 0.1 6.1 5 0 0 5 5 5 3 NHL repeat TGFb_propeptide PF00688.18 gi|435849842|ref|YP_007301783.1| - 3.1e-09 37.0 0.0 5.6 6.6 0.0 6.0 6 0 0 6 6 6 2 TGF-beta propeptide SBBP PF06739.11 gi|435849842|ref|YP_007301783.1| - 5.8e-09 35.8 32.5 0.059 13.4 0.6 8.1 7 0 0 7 7 7 4 Beta-propeller repeat Hydrolase_4 PF12146.8 gi|435849842|ref|YP_007301783.1| - 7.8e-09 35.2 0.0 1.4e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Lipase_2 PF01674.18 gi|435849842|ref|YP_007301783.1| - 2.5e-06 27.2 1.0 7.4e-06 25.6 0.0 2.3 2 0 0 2 2 2 1 Lipase (class 2) Palm_thioest PF02089.15 gi|435849842|ref|YP_007301783.1| - 3.4e-05 23.8 0.0 6.7e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Palmitoyl protein thioesterase Abhydrolase_6 PF12697.7 gi|435849842|ref|YP_007301783.1| - 0.0001 23.0 0.0 0.00023 21.9 0.0 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|435849842|ref|YP_007301783.1| - 0.00039 20.1 0.2 0.0012 18.6 0.2 1.8 1 0 0 1 1 1 1 alpha/beta hydrolase fold DUF4625 PF15418.6 gi|435849842|ref|YP_007301783.1| - 0.0012 19.1 10.1 13 6.0 0.1 6.2 5 3 2 7 7 7 0 Domain of unknown function (DUF4625) DUF5128 PF17170.4 gi|435849842|ref|YP_007301783.1| - 0.0014 17.8 6.3 0.0048 16.1 3.2 2.8 2 0 0 2 2 2 1 6-bladed beta-propeller Y_Y_Y PF07495.13 gi|435849842|ref|YP_007301783.1| - 0.0023 17.8 17.4 1 9.3 1.4 6.2 6 0 0 6 6 6 1 Y_Y_Y domain ChitinaseA_N PF08329.10 gi|435849842|ref|YP_007301783.1| - 0.011 15.3 8.5 0.08 12.6 0.1 5.1 6 0 0 6 6 6 0 Chitinase A, N-terminal domain PKD_3 PF16820.5 gi|435849842|ref|YP_007301783.1| - 0.015 15.1 16.4 0.085 12.6 0.6 6.1 7 0 0 7 7 6 0 PKD-like domain Ub-RnfH PF03658.14 gi|435849842|ref|YP_007301783.1| - 0.02 15.3 4.7 38 4.7 0.0 4.2 4 0 0 4 4 4 0 RnfH family Ubiquitin PGAP1 PF07819.13 gi|435849842|ref|YP_007301783.1| - 0.041 13.6 0.4 0.18 11.5 0.4 2.0 1 1 0 1 1 1 0 PGAP1-like protein DUF676 PF05057.14 gi|435849842|ref|YP_007301783.1| - 0.071 12.6 0.2 0.28 10.7 0.2 1.8 1 1 0 1 1 1 0 Putative serine esterase (DUF676) Abhydro_lipase PF04083.16 gi|435849842|ref|YP_007301783.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 Partial alpha/beta-hydrolase lipase region ECH_2 PF16113.5 gi|435849842|ref|YP_007301783.1| - 0.13 11.7 0.5 54 3.1 0.0 3.0 3 0 0 3 3 3 0 Enoyl-CoA hydratase/isomerase US22 PF02393.16 gi|435849842|ref|YP_007301783.1| - 0.19 12.0 0.4 88 3.4 0.0 3.9 4 0 0 4 4 4 0 US22 like TcfC PF16967.5 gi|435849842|ref|YP_007301783.1| - 0.84 9.2 12.8 7.5 6.1 0.2 5.0 5 0 0 5 5 5 0 E-set like domain MG2 PF01835.19 gi|435849842|ref|YP_007301783.1| - 1.1 9.7 13.9 19 5.8 0.3 6.6 8 0 0 8 8 7 0 MG2 domain DUF5011 PF16403.5 gi|435849842|ref|YP_007301783.1| - 3.7 7.7 41.8 0.77 9.9 0.4 7.6 7 0 0 7 7 7 0 Domain of unknown function (DUF5011) He_PIG PF05345.12 gi|435849842|ref|YP_007301783.1| - 5.8 7.2 47.2 0.48 10.6 0.8 8.2 7 0 0 7 7 6 0 Putative Ig domain DUF262 PF03235.14 gi|435849843|ref|YP_007301784.1| - 1.8e-39 136.2 9.4 1.8e-39 136.2 9.4 2.6 2 1 0 2 2 2 1 Protein of unknown function DUF262 DUF1524 PF07510.11 gi|435849843|ref|YP_007301784.1| - 1.8e-24 86.2 0.0 1.8e-24 86.2 0.0 2.9 4 0 0 4 4 4 1 Protein of unknown function (DUF1524) HTH_24 PF13412.6 gi|435849844|ref|YP_007301785.1| - 3.6e-21 74.5 0.4 1.2e-10 40.7 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|435849844|ref|YP_007301785.1| - 6.2e-14 51.8 0.0 2.2e-06 27.6 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|435849844|ref|YP_007301785.1| - 1.1e-12 47.6 0.0 4e-05 23.4 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|435849844|ref|YP_007301785.1| - 9.9e-12 44.6 0.1 5.5e-06 26.2 0.0 2.2 2 0 0 2 2 2 2 HTH domain MarR_2 PF12802.7 gi|435849844|ref|YP_007301785.1| - 1.2e-11 44.3 0.0 5.2e-06 26.3 0.0 2.5 3 0 0 3 3 2 2 MarR family HTH_34 PF13601.6 gi|435849844|ref|YP_007301785.1| - 2.5e-08 34.0 0.0 0.0012 19.0 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|435849844|ref|YP_007301785.1| - 4.2e-08 32.8 0.0 3.4e-05 23.6 0.0 2.2 2 0 0 2 2 2 2 IclR helix-turn-helix domain MarR PF01047.22 gi|435849844|ref|YP_007301785.1| - 3e-07 30.3 0.0 6.5e-05 22.8 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_40 PF14493.6 gi|435849844|ref|YP_007301785.1| - 1.8e-06 28.3 0.0 0.0044 17.4 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|435849844|ref|YP_007301785.1| - 2.8e-06 27.4 0.0 7.3e-06 26.1 0.0 1.8 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GerE PF00196.19 gi|435849844|ref|YP_007301785.1| - 3.3e-06 26.6 0.1 0.00025 20.5 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 gi|435849844|ref|YP_007301785.1| - 2.4e-05 24.0 0.0 0.0056 16.4 0.0 3.0 3 0 0 3 3 3 1 Homeodomain-like domain HTH_Mga PF08280.11 gi|435849844|ref|YP_007301785.1| - 6.6e-05 22.9 0.0 0.00058 19.8 0.0 2.2 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain RP-C PF03428.13 gi|435849844|ref|YP_007301785.1| - 0.00019 21.2 0.0 0.047 13.4 0.0 2.2 2 0 0 2 2 2 1 Replication protein C N-terminal domain HTH_28 PF13518.6 gi|435849844|ref|YP_007301785.1| - 0.00031 20.8 0.0 0.034 14.3 0.0 2.5 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|435849844|ref|YP_007301785.1| - 0.00038 20.4 0.0 0.0032 17.4 0.0 2.3 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|435849844|ref|YP_007301785.1| - 0.00038 20.3 0.0 0.0042 16.9 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|435849844|ref|YP_007301785.1| - 0.00042 20.1 0.0 0.0048 16.7 0.0 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_36 PF13730.6 gi|435849844|ref|YP_007301785.1| - 0.00085 19.2 0.3 0.0034 17.3 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|435849844|ref|YP_007301785.1| - 0.0018 17.9 0.2 0.03 14.0 0.0 2.5 2 1 1 3 3 3 1 Sigma-70, region 4 TFIIE_alpha PF02002.17 gi|435849844|ref|YP_007301785.1| - 0.0069 16.2 0.1 1.7 8.5 0.1 2.2 1 1 1 2 2 2 1 TFIIE alpha subunit HTH_10 PF04967.12 gi|435849844|ref|YP_007301785.1| - 0.022 14.5 0.0 0.042 13.7 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain RPA_C PF08784.11 gi|435849844|ref|YP_007301785.1| - 0.028 15.1 0.0 7.1 7.4 0.0 2.2 2 0 0 2 2 2 0 Replication protein A C terminal HTH_38 PF13936.6 gi|435849844|ref|YP_007301785.1| - 0.029 14.1 0.2 0.12 12.1 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|435849844|ref|YP_007301785.1| - 0.037 14.4 0.0 0.37 11.1 0.0 2.1 2 0 0 2 2 2 0 Penicillinase repressor Sigma70_r4 PF04545.16 gi|435849844|ref|YP_007301785.1| - 0.038 13.5 0.1 0.2 11.2 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 DDRGK PF09756.9 gi|435849844|ref|YP_007301785.1| - 0.087 12.4 0.5 0.39 10.3 0.4 1.8 2 0 0 2 2 2 0 DDRGK domain HTH_Tnp_Tc3_2 PF01498.18 gi|435849844|ref|YP_007301785.1| - 0.087 13.1 0.0 13 6.1 0.0 2.3 2 0 0 2 2 2 0 Transposase Rrf2 PF02082.20 gi|435849844|ref|YP_007301785.1| - 0.14 12.5 0.0 1.2 9.6 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator HTH_41 PF14502.6 gi|435849844|ref|YP_007301785.1| - 0.16 11.7 0.0 13 5.6 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain PsbQ PF05757.11 gi|435849844|ref|YP_007301785.1| - 0.18 11.6 0.0 0.25 11.0 0.0 1.1 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) Zn_dep_PLPC PF00882.18 gi|435849847|ref|YP_007301788.1| - 1.6e-07 31.5 0.8 1.6e-07 31.5 0.8 1.8 2 0 0 2 2 2 1 Zinc dependent phospholipase C tRNA_anti-codon PF01336.25 gi|435849849|ref|YP_007301790.1| - 3.6e-21 74.9 11.1 2.2e-06 27.5 1.5 3.9 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|435849849|ref|YP_007301790.1| - 2.5e-13 50.2 6.5 6.9e-05 22.7 0.1 3.2 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 REPA_OB_2 PF16900.5 gi|435849849|ref|YP_007301790.1| - 8.6e-11 41.6 11.3 3.5e-05 23.7 0.9 3.4 3 0 0 3 3 3 3 Replication protein A OB domain DUF4539 PF15072.6 gi|435849849|ref|YP_007301790.1| - 0.00016 21.7 0.7 1.2 9.2 0.0 3.8 3 1 1 4 4 4 2 Domain of unknown function (DUF4539) DUF3127 PF11325.8 gi|435849849|ref|YP_007301790.1| - 0.0016 18.7 2.0 1.7 8.9 0.0 3.2 3 0 0 3 3 3 2 Domain of unknown function (DUF3127) POT1PC PF16686.5 gi|435849849|ref|YP_007301790.1| - 0.0062 16.4 0.1 0.066 13.1 0.0 2.5 3 0 0 3 3 3 1 ssDNA-binding domain of telomere protection protein Rep_fac-A_C PF08646.10 gi|435849849|ref|YP_007301790.1| - 0.024 14.4 0.2 19 5.0 0.0 3.3 3 0 0 3 3 3 0 Replication factor-A C terminal domain DUF2963 PF11178.8 gi|435849849|ref|YP_007301790.1| - 0.49 10.2 0.1 0.49 10.2 0.1 4.6 5 1 0 5 5 5 0 Protein of unknown function (DUF2963) DDE_Tnp_ISL3 PF01610.17 gi|435849850|ref|YP_007301791.1| - 6.5e-68 229.0 5.9 9.5e-68 228.5 5.9 1.2 1 0 0 1 1 1 1 Transposase HTH_Tnp_ISL3 PF13542.6 gi|435849850|ref|YP_007301791.1| - 1.7e-15 56.2 0.1 3.2e-15 55.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 gi|435849850|ref|YP_007301791.1| - 3e-12 47.0 1.8 6.5e-12 45.9 1.8 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HTH_23 PF13384.6 gi|435849850|ref|YP_007301791.1| - 0.0012 18.5 0.1 0.0056 16.4 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain UPF0236 PF06782.11 gi|435849850|ref|YP_007301791.1| - 0.0047 15.6 2.3 0.011 14.5 0.4 2.4 3 1 0 3 3 3 1 Uncharacterised protein family (UPF0236) Arc_C PF18162.1 gi|435849850|ref|YP_007301791.1| - 0.098 12.5 0.1 8.6 6.3 0.0 2.7 1 1 1 2 2 2 0 Arc C-lobe ArsA_HSP20 PF17886.1 gi|435849851|ref|YP_007301792.1| - 0.018 14.6 0.0 0.024 14.2 0.0 1.2 1 0 0 1 1 1 0 HSP20-like domain found in ArsA OrfB_Zn_ribbon PF07282.11 gi|435849852|ref|YP_007301793.1| - 5.3e-23 80.7 0.9 1.3e-22 79.5 0.9 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|435849852|ref|YP_007301793.1| - 1.3e-11 44.7 0.4 3.3e-11 43.4 0.0 1.8 2 0 0 2 2 2 1 Probable transposase zn-ribbon_14 PF16503.5 gi|435849852|ref|YP_007301793.1| - 0.72 9.4 3.2 5.1 6.7 0.5 2.4 2 0 0 2 2 2 0 Zinc-ribbon CS PF04969.16 gi|435849855|ref|YP_007301796.1| - 0.00017 22.5 0.1 0.00031 21.7 0.1 1.4 1 0 0 1 1 1 1 CS domain HSP20 PF00011.21 gi|435849855|ref|YP_007301796.1| - 0.00028 21.0 0.1 0.0088 16.2 0.1 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family zf_UBZ PF18439.1 gi|435849856|ref|YP_007301797.1| - 0.062 12.9 0.1 0.13 11.9 0.1 1.5 1 0 0 1 1 1 0 Ubiquitin-Binding Zinc Finger HD PF01966.22 gi|435849857|ref|YP_007301798.1| - 9.7e-05 22.6 0.0 0.00016 21.9 0.0 1.4 1 0 0 1 1 1 1 HD domain Ins_beta PF03488.14 gi|435849860|ref|YP_007301801.1| - 0.11 12.5 0.4 0.11 12.5 0.4 2.5 2 1 0 2 2 2 0 Nematode insulin-related peptide beta type FIVAR PF07554.13 gi|435849862|ref|YP_007301803.1| - 1.4e-10 41.7 51.0 7.6e-06 26.6 5.0 4.5 5 0 0 5 5 5 3 FIVAR domain CAMP_factor PF07373.11 gi|435849862|ref|YP_007301803.1| - 0.05 13.2 14.6 0.27 10.8 0.3 3.7 1 1 2 4 4 4 0 CAMP factor (Cfa) fn3 PF00041.21 gi|435849862|ref|YP_007301803.1| - 0.11 12.8 13.5 0.76 10.2 1.2 3.9 2 2 0 2 2 2 0 Fibronectin type III domain DUF148 PF02520.17 gi|435849862|ref|YP_007301803.1| - 0.93 9.6 10.4 0.7 10.0 1.0 3.3 3 0 0 3 3 3 0 Domain of unknown function DUF148 DUF3082 PF11282.8 gi|435849863|ref|YP_007301804.1| - 0.012 15.9 2.3 0.015 15.5 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3082) 7tm_7 PF08395.12 gi|435849863|ref|YP_007301804.1| - 0.026 13.7 0.2 0.026 13.7 0.2 1.0 1 0 0 1 1 1 0 7tm Chemosensory receptor TF_Zn_Ribbon PF08271.12 gi|435849864|ref|YP_007301805.1| - 0.0012 18.3 3.9 0.11 12.0 0.2 2.7 3 0 0 3 3 2 2 TFIIB zinc-binding Sgf11 PF08209.11 gi|435849864|ref|YP_007301805.1| - 0.0024 17.4 2.6 0.068 12.7 0.2 2.3 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.10 gi|435849864|ref|YP_007301805.1| - 0.0037 17.3 1.2 0.17 12.0 0.1 2.4 2 0 0 2 2 2 1 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|435849864|ref|YP_007301805.1| - 0.027 14.4 0.9 0.87 9.6 0.0 2.4 2 0 0 2 2 2 0 Nudix N-terminal zf-LITAF-like PF10601.9 gi|435849864|ref|YP_007301805.1| - 0.027 14.7 0.6 1.1 9.5 0.0 2.3 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|435849864|ref|YP_007301805.1| - 0.035 13.8 5.8 4 7.2 0.2 3.2 3 0 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein Thioredoxin_3 PF13192.6 gi|435849864|ref|YP_007301805.1| - 0.037 14.1 0.4 1.5 8.9 0.0 2.2 2 1 0 2 2 2 0 Thioredoxin domain zinc-ribbons_6 PF07191.12 gi|435849864|ref|YP_007301805.1| - 0.038 14.0 0.3 5.8 7.0 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbons zf-ribbon_3 PF13248.6 gi|435849864|ref|YP_007301805.1| - 0.044 13.2 1.1 1.4 8.4 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF2757 PF10955.8 gi|435849864|ref|YP_007301805.1| - 0.053 13.8 1.2 0.11 12.7 1.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2757) zinc_ribbon_2 PF13240.6 gi|435849864|ref|YP_007301805.1| - 0.054 13.2 3.5 0.18 11.5 0.4 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|435849864|ref|YP_007301805.1| - 0.056 13.0 1.8 1.4 8.6 0.2 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|435849864|ref|YP_007301805.1| - 0.094 12.8 1.7 0.29 11.2 1.7 1.8 1 1 0 1 1 1 0 Double zinc ribbon DUF1610 PF07754.11 gi|435849864|ref|YP_007301805.1| - 0.42 10.6 8.4 3.4 7.7 2.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-Di19 PF05605.12 gi|435849864|ref|YP_007301805.1| - 0.44 10.9 3.9 13 6.2 0.1 2.6 2 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding UPF0547 PF10571.9 gi|435849864|ref|YP_007301805.1| - 0.74 9.9 5.0 7.4 6.8 1.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.18 gi|435849864|ref|YP_007301805.1| - 0.74 9.7 5.0 1.3 9.0 0.8 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) HscB_4_cys PF18256.1 gi|435849864|ref|YP_007301805.1| - 1 9.3 3.9 1.8 8.5 0.5 2.2 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif zf-RING_7 PF02591.15 gi|435849864|ref|YP_007301805.1| - 1.4 9.2 5.9 1.7 8.9 0.5 2.7 3 0 0 3 3 3 0 C4-type zinc ribbon domain zf-Mss51 PF13824.6 gi|435849864|ref|YP_007301805.1| - 1.7 8.8 6.8 14 5.9 0.0 2.9 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 PhnA_Zn_Ribbon PF08274.12 gi|435849864|ref|YP_007301805.1| - 1.7 8.6 7.5 6.7 6.7 0.1 2.6 2 1 0 2 2 2 0 PhnA Zinc-Ribbon Prok-RING_1 PF14446.6 gi|435849865|ref|YP_007301806.1| - 0.064 13.2 0.5 0.064 13.2 0.5 1.6 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 CHZ PF09649.10 gi|435849865|ref|YP_007301806.1| - 0.16 11.5 1.0 0.25 10.8 1.0 1.3 1 0 0 1 1 1 0 Histone chaperone domain CHZ HEAT_2 PF13646.6 gi|435849866|ref|YP_007301807.1| - 8.8e-10 38.9 0.0 4e-07 30.3 0.0 2.4 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.16 gi|435849866|ref|YP_007301807.1| - 7.8e-05 23.0 0.4 5.3 8.0 0.0 3.5 3 0 0 3 3 3 2 PBS lyase HEAT-like repeat DUF3385 PF11865.8 gi|435849866|ref|YP_007301807.1| - 0.0086 16.0 0.5 4 7.3 0.1 2.3 1 1 0 2 2 2 2 Domain of unknown function (DUF3385) Symplekin_C PF12295.8 gi|435849866|ref|YP_007301807.1| - 0.083 13.0 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Symplekin tight junction protein C terminal Helicase_C PF00271.31 gi|435849868|ref|YP_007301809.1| - 1.8e-11 44.3 2.0 2e-11 44.2 0.2 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ERCC3_RAD25_C PF16203.5 gi|435849868|ref|YP_007301809.1| - 2.8e-09 36.5 0.1 8.5e-09 35.0 0.1 1.7 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase SNF2_N PF00176.23 gi|435849868|ref|YP_007301809.1| - 1e-06 27.7 0.6 0.00038 19.3 0.0 2.6 2 1 0 2 2 2 2 SNF2 family N-terminal domain N6_Mtase PF02384.16 gi|435849868|ref|YP_007301809.1| - 1.8e-06 27.5 0.1 4.8e-06 26.1 0.1 1.7 1 0 0 1 1 1 1 N-6 DNA Methylase ResIII PF04851.15 gi|435849868|ref|YP_007301809.1| - 1.7e-05 24.9 3.0 2.1e-05 24.6 0.1 2.5 2 1 1 3 3 3 1 Type III restriction enzyme, res subunit LRR_4 PF12799.7 gi|435849868|ref|YP_007301809.1| - 0.13 12.7 1.5 0.65 10.5 1.5 2.3 1 0 0 1 1 1 0 Leucine Rich repeats (2 copies) DUF1902 PF08972.11 gi|435849868|ref|YP_007301809.1| - 0.15 12.1 0.0 0.54 10.3 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1902) MapZ_EC1 PF18041.1 gi|435849868|ref|YP_007301809.1| - 5.4 7.3 7.6 11 6.2 0.1 3.7 4 0 0 4 4 4 0 MapZ extracellular domain 1 HEAT_2 PF13646.6 gi|435849869|ref|YP_007301810.1| - 3.3e-16 59.4 0.0 1.7e-07 31.5 0.0 4.9 4 1 3 7 7 4 4 HEAT repeats HEAT PF02985.22 gi|435849869|ref|YP_007301810.1| - 3.9e-13 48.4 0.0 0.52 10.7 0.0 7.0 7 0 0 7 7 6 3 HEAT repeat DUF4116 PF13475.6 gi|435849869|ref|YP_007301810.1| - 1.3e-08 34.4 3.5 0.26 11.1 0.0 6.2 5 3 0 5 5 4 2 Domain of unknown function (DUF4116) Cnd1 PF12717.7 gi|435849869|ref|YP_007301810.1| - 8.6e-08 32.4 0.8 0.018 15.1 0.0 4.5 2 1 3 5 5 5 3 non-SMC mitotic condensation complex subunit 1 NPV_P10 PF05531.12 gi|435849869|ref|YP_007301810.1| - 7.5e-05 23.1 5.3 0.00035 21.0 5.3 2.2 1 0 0 1 1 1 1 Nucleopolyhedrovirus P10 protein HEAT_EZ PF13513.6 gi|435849869|ref|YP_007301810.1| - 0.0003 21.2 1.4 0.89 10.1 0.1 4.6 5 1 0 5 5 3 1 HEAT-like repeat MAS20 PF02064.15 gi|435849869|ref|YP_007301810.1| - 0.0013 18.8 0.3 0.019 15.0 0.0 2.5 2 0 0 2 2 2 1 MAS20 protein import receptor DUF2193 PF09959.9 gi|435849869|ref|YP_007301810.1| - 0.0024 16.4 0.1 0.0024 16.4 0.1 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2193) Arm PF00514.23 gi|435849869|ref|YP_007301810.1| - 0.0088 16.1 0.2 2.8 8.1 0.0 4.3 5 0 0 5 5 5 1 Armadillo/beta-catenin-like repeat DUF2353 PF09789.9 gi|435849869|ref|YP_007301810.1| - 0.016 14.6 1.2 0.016 14.6 1.2 2.4 2 0 0 2 2 2 0 Uncharacterized coiled-coil protein (DUF2353) Baculo_PEP_C PF04513.12 gi|435849869|ref|YP_007301810.1| - 0.036 14.1 2.8 0.059 13.4 0.3 2.3 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF5344 PF17279.2 gi|435849869|ref|YP_007301810.1| - 0.12 13.0 9.1 0.069 13.7 3.5 3.0 2 0 0 2 2 2 0 Family of unknown function (DUF5344) BORCS7 PF16088.5 gi|435849869|ref|YP_007301810.1| - 0.14 12.5 4.4 1.7 8.9 0.3 2.9 2 0 0 2 2 2 0 BLOC-1-related complex sub-unit 7 YtxH PF12732.7 gi|435849869|ref|YP_007301810.1| - 0.21 12.2 8.2 20 5.8 0.3 4.0 2 2 0 2 2 2 0 YtxH-like protein FANCI_S2 PF14676.6 gi|435849869|ref|YP_007301810.1| - 0.25 11.6 0.7 2.6 8.3 0.1 2.7 3 0 0 3 3 3 0 FANCI solenoid 2 STAT_alpha PF01017.20 gi|435849869|ref|YP_007301810.1| - 0.34 10.8 12.0 0.022 14.6 2.2 2.3 2 0 0 2 2 2 0 STAT protein, all-alpha domain COG5 PF10392.9 gi|435849869|ref|YP_007301810.1| - 0.46 10.6 6.6 0.15 12.2 2.9 2.0 2 0 0 2 2 2 0 Golgi transport complex subunit 5 Sec34 PF04136.15 gi|435849869|ref|YP_007301810.1| - 1.2 9.0 7.2 3 7.7 2.1 2.9 2 1 0 2 2 2 0 Sec34-like family LPP PF04728.13 gi|435849869|ref|YP_007301810.1| - 1.5 9.2 5.0 3.3 8.2 1.0 3.1 2 1 1 3 3 3 0 Lipoprotein leucine-zipper Mod_r PF07200.13 gi|435849869|ref|YP_007301810.1| - 1.7 8.7 13.7 1.9 8.6 4.2 2.8 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Seryl_tRNA_N PF02403.22 gi|435849869|ref|YP_007301810.1| - 3.3 8.0 17.4 0.57 10.4 2.3 3.5 3 1 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain TMF_TATA_bd PF12325.8 gi|435849869|ref|YP_007301810.1| - 3.5 7.9 9.1 1.1 9.5 2.4 2.6 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF948 PF06103.11 gi|435849869|ref|YP_007301810.1| - 5.3 7.4 8.2 10 6.5 2.3 3.4 3 1 1 4 4 4 0 Bacterial protein of unknown function (DUF948) Adeno_E3_15_3 PF03307.14 gi|435849870|ref|YP_007301811.1| - 0.04 13.9 0.0 0.048 13.6 0.0 1.2 1 0 0 1 1 1 0 Adenovirus 15.3kD protein in E3 region NRDD PF13597.6 gi|435849871|ref|YP_007301812.1| - 1e-156 523.1 0.9 1.2e-156 522.8 0.9 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.16 gi|435849871|ref|YP_007301812.1| - 0.022 15.3 0.0 0.063 13.9 0.0 1.8 1 0 0 1 1 1 0 ATP cone domain AAA_lid_2 PF17863.1 gi|435849872|ref|YP_007301813.1| - 4.4e-07 29.7 0.0 9.4e-07 28.6 0.0 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|435849872|ref|YP_007301813.1| - 3.7e-05 23.7 0.0 0.0002 21.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|435849872|ref|YP_007301813.1| - 0.00011 22.1 2.5 0.00041 20.2 0.1 3.0 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) MRP-S28 PF10213.9 gi|435849872|ref|YP_007301813.1| - 0.054 13.9 1.2 0.15 12.4 0.2 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal subunit protein AAA_lid_8 PF17868.1 gi|435849872|ref|YP_007301813.1| - 0.13 12.2 0.0 0.34 10.9 0.0 1.7 1 0 0 1 1 1 0 AAA lid domain Xpo1 PF08389.12 gi|435849873|ref|YP_007301814.1| - 0.037 14.1 2.2 0.086 12.9 1.7 1.8 1 1 1 2 2 2 0 Exportin 1-like protein BLI1 PF17324.2 gi|435849873|ref|YP_007301814.1| - 0.15 12.7 3.3 0.28 11.9 1.5 2.3 2 0 0 2 2 2 0 BLOC-1 interactor 1 SMC_ScpA PF02616.14 gi|435849875|ref|YP_007301816.1| - 4.9e-15 56.1 1.4 1.8e-08 34.6 0.2 2.3 2 0 0 2 2 2 2 Segregation and condensation protein ScpA Rad21_Rec8 PF04824.16 gi|435849875|ref|YP_007301816.1| - 0.015 14.6 0.0 0.038 13.3 0.0 1.7 1 0 0 1 1 1 0 Conserved region of Rad21 / Rec8 like protein Cnd2 PF05786.14 gi|435849875|ref|YP_007301816.1| - 0.093 11.4 0.7 0.61 8.7 0.0 2.0 2 0 0 2 2 2 0 Condensin complex subunit 2 HOIP-UBA PF16678.5 gi|435849876|ref|YP_007301817.1| - 0.18 11.8 0.0 0.32 11.0 0.0 1.5 1 0 0 1 1 1 0 HOIP UBA domain pair HEAT_2 PF13646.6 gi|435849877|ref|YP_007301818.1| - 2.2e-09 37.6 0.0 0.0022 18.4 0.0 3.3 3 1 1 4 4 4 3 HEAT repeats HEAT PF02985.22 gi|435849877|ref|YP_007301818.1| - 1.4e-07 31.1 0.0 7.4 7.1 0.0 5.8 5 0 0 5 5 5 2 HEAT repeat DUF16 PF01519.16 gi|435849877|ref|YP_007301818.1| - 0.026 15.0 2.0 0.026 15.0 2.0 3.1 2 1 1 3 3 3 0 Protein of unknown function DUF16 DUF1048 PF06304.11 gi|435849877|ref|YP_007301818.1| - 0.059 13.8 0.0 0.55 10.7 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1048) PheRS_DBD1 PF18552.1 gi|435849877|ref|YP_007301818.1| - 0.12 12.1 0.2 0.31 10.8 0.2 1.7 1 0 0 1 1 1 0 PheRS DNA binding domain 1 DUF1664 PF07889.12 gi|435849877|ref|YP_007301818.1| - 3.6 7.6 7.9 0.77 9.8 0.2 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) DUF2934 PF11154.8 gi|435849878|ref|YP_007301819.1| - 3.1e-05 23.5 2.5 0.039 13.6 0.9 4.1 3 2 0 3 3 3 2 Protein of unknown function (DUF2934) ChaC PF04752.12 gi|435849879|ref|YP_007301820.1| - 0.081 13.0 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 ChaC-like protein BNR_assoc_N PF14873.6 gi|435849879|ref|YP_007301820.1| - 0.085 12.5 0.1 0.14 11.8 0.1 1.3 1 0 0 1 1 1 0 N-terminal domain of BNR-repeat neuraminidase DNA_primase_S PF01896.19 gi|435849882|ref|YP_007301823.1| - 0.0031 17.6 0.0 0.024 14.7 0.0 2.3 2 1 1 3 3 3 2 DNA primase small subunit CHDNT PF08073.12 gi|435849882|ref|YP_007301823.1| - 0.085 12.8 0.5 0.26 11.3 0.5 1.8 1 0 0 1 1 1 0 CHDNT (NUC034) domain VWA_2 PF13519.6 gi|435849884|ref|YP_007301825.1| - 2.7e-07 31.2 0.0 6.7e-07 29.9 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|435849884|ref|YP_007301825.1| - 6.7e-07 29.7 1.6 1.3e-06 28.8 0.3 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain Peptidase_M48 PF01435.18 gi|435849884|ref|YP_007301825.1| - 0.0029 17.4 0.0 0.0059 16.4 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 VWA_3 PF13768.6 gi|435849884|ref|YP_007301825.1| - 0.0034 17.4 0.0 0.01 15.8 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain DUF2201 PF09967.9 gi|435849884|ref|YP_007301825.1| - 0.0043 17.2 0.0 0.0091 16.1 0.0 1.5 1 0 0 1 1 1 1 VWA-like domain (DUF2201) VWA_CoxE PF05762.14 gi|435849884|ref|YP_007301825.1| - 0.0078 15.6 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein SprT-like PF10263.9 gi|435849884|ref|YP_007301825.1| - 0.045 13.6 0.1 0.11 12.4 0.1 1.6 1 0 0 1 1 1 0 SprT-like family OrfB_Zn_ribbon PF07282.11 gi|435849885|ref|YP_007301826.1| - 1e-23 83.0 2.4 2.6e-23 81.7 2.4 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|435849885|ref|YP_007301826.1| - 7.6e-11 42.3 0.6 1.8e-10 41.1 0.1 1.9 2 0 0 2 2 2 1 Probable transposase HypA PF01155.19 gi|435849885|ref|YP_007301826.1| - 0.11 12.5 0.4 0.29 11.2 0.2 1.7 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zn-ribbon_14 PF16503.5 gi|435849885|ref|YP_007301826.1| - 0.41 10.2 3.4 6.8 6.3 0.4 2.5 2 0 0 2 2 2 0 Zinc-ribbon DHHA1 PF02272.19 gi|435849887|ref|YP_007301828.1| - 8.1e-18 65.2 0.1 2e-17 63.9 0.1 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|435849887|ref|YP_007301828.1| - 0.0027 17.9 0.7 0.0062 16.8 0.7 1.6 1 0 0 1 1 1 1 DHH family B12-binding PF02310.19 gi|435849887|ref|YP_007301828.1| - 0.019 15.0 0.0 0.045 13.8 0.0 1.5 1 0 0 1 1 1 0 B12 binding domain SelA PF03841.13 gi|435849887|ref|YP_007301828.1| - 0.06 12.3 0.0 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 L-seryl-tRNA selenium transferase CDC45 PF02724.14 gi|435849887|ref|YP_007301828.1| - 0.11 10.7 0.0 1.8 6.7 0.0 2.0 2 0 0 2 2 2 0 CDC45-like protein Transketolase_C PF02780.20 gi|435849887|ref|YP_007301828.1| - 0.15 12.0 0.0 0.6 10.0 0.0 2.0 2 0 0 2 2 2 0 Transketolase, C-terminal domain CheR_N PF03705.15 gi|435849888|ref|YP_007301829.1| - 0.007 16.1 0.0 0.0091 15.7 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain FolB PF02152.18 gi|435849888|ref|YP_007301829.1| - 0.12 13.0 0.0 0.12 12.9 0.0 1.1 1 0 0 1 1 1 0 Dihydroneopterin aldolase Staphostatin_A PF09022.10 gi|435849889|ref|YP_007301830.1| - 0.0046 16.8 0.1 0.0089 15.9 0.1 1.5 1 0 0 1 1 1 1 Staphostatin A DUF1724 PF08350.10 gi|435849890|ref|YP_007301831.1| - 1e-21 76.8 0.1 2.3e-21 75.7 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_45 PF14947.6 gi|435849890|ref|YP_007301831.1| - 0.00056 19.8 1.6 0.00089 19.2 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DUF1819 PF08849.11 gi|435849890|ref|YP_007301831.1| - 0.026 14.3 0.0 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 Putative inner membrane protein (DUF1819) DEAD PF00270.29 gi|435849891|ref|YP_007301832.1| - 2.7e-27 95.7 0.2 3.9e-26 91.9 0.1 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|435849891|ref|YP_007301832.1| - 1.3e-11 44.8 0.6 2.4e-08 34.3 0.0 3.7 2 1 1 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|435849891|ref|YP_007301832.1| - 2.4e-09 37.4 0.2 9.1e-09 35.5 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|435849891|ref|YP_007301832.1| - 7.2e-07 29.7 0.0 6.6e-06 26.6 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|435849891|ref|YP_007301832.1| - 0.00042 20.1 0.0 0.001 18.8 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.7 gi|435849891|ref|YP_007301832.1| - 0.055 13.6 0.1 0.43 10.7 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF2863 PF11062.8 gi|435849892|ref|YP_007301833.1| - 0.17 10.3 0.0 0.27 9.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) DUF1699 PF08004.11 gi|435849893|ref|YP_007301834.1| - 2.5e-41 140.4 3.2 2.9e-41 140.2 3.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Corazonin PF17308.2 gi|435849894|ref|YP_007301835.1| - 0.031 14.6 0.1 0.072 13.5 0.1 1.5 1 0 0 1 1 1 0 Pro-corazonin DUF1400 PF07176.11 gi|435849894|ref|YP_007301835.1| - 0.07 13.4 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1400) DNA_pol_B PF00136.21 gi|435849896|ref|YP_007301837.1| - 2e-105 353.2 0.3 2.5e-105 352.8 0.3 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|435849896|ref|YP_007301837.1| - 2.2e-53 181.6 0.4 4.8e-53 180.5 0.2 1.7 2 0 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|435849896|ref|YP_007301837.1| - 0.011 15.8 0.0 0.05 13.6 0.0 2.0 2 1 0 2 2 2 0 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|435849896|ref|YP_007301837.1| - 0.045 13.4 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB UBA_3 PF09288.10 gi|435849896|ref|YP_007301837.1| - 0.13 12.1 1.4 1.9 8.3 0.0 3.2 3 0 0 3 3 3 0 Fungal ubiquitin-associated domain NosD PF05048.13 gi|435849897|ref|YP_007301838.1| - 6.1e-71 238.5 103.9 1.1e-31 109.9 28.6 5.0 1 1 2 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|435849897|ref|YP_007301838.1| - 2.5e-54 183.4 118.7 1.4e-16 60.7 20.1 5.5 2 1 4 6 6 6 5 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|435849897|ref|YP_007301838.1| - 5.6e-05 23.1 61.4 0.0056 16.5 1.4 6.0 1 1 4 5 5 5 3 Pectate lyase superfamily protein DUF3715 PF12509.8 gi|435849897|ref|YP_007301838.1| - 3.9 7.4 8.0 4.6 7.2 0.1 3.6 3 2 0 3 3 3 0 Protein of unknown function (DUF3715) DUF1699 PF08004.11 gi|435849899|ref|YP_007301840.1| - 1.5e-37 128.2 2.1 1.7e-37 128.0 2.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF4149 PF13664.6 gi|435849900|ref|YP_007301841.1| - 0.014 15.7 0.0 0.015 15.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4149) Orf78 PF06024.12 gi|435849901|ref|YP_007301842.1| - 0.082 13.2 1.2 0.08 13.2 1.2 1.1 1 0 0 1 1 1 0 Orf78 (ac78) ABC2_membrane_2 PF12679.7 gi|435849902|ref|YP_007301843.1| - 0.41 9.9 6.7 0.48 9.7 6.7 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF1829 PF08862.10 gi|435849903|ref|YP_007301844.1| - 0.076 13.5 0.7 0.33 11.5 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function DUF1829 ATP-synt_10 PF05176.14 gi|435849904|ref|YP_007301845.1| - 0.046 13.0 0.1 0.049 12.9 0.1 1.1 1 0 0 1 1 1 0 ATP10 protein OrfB_IS605 PF01385.19 gi|435849905|ref|YP_007301846.1| - 5.2e-26 91.2 0.1 1e-25 90.3 0.1 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|435849905|ref|YP_007301846.1| - 1.2e-21 76.4 0.3 2.5e-21 75.4 0.3 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|435849905|ref|YP_007301846.1| - 1e-14 53.7 0.8 2.2e-14 52.7 0.8 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain zf-piccolo PF05715.13 gi|435849905|ref|YP_007301846.1| - 0.0025 17.9 0.4 0.0057 16.8 0.4 1.5 1 0 0 1 1 1 1 Piccolo Zn-finger Flagellin_N PF00669.20 gi|435849905|ref|YP_007301846.1| - 0.081 13.0 0.7 0.2 11.8 0.1 1.8 2 0 0 2 2 2 0 Bacterial flagellin N-terminal helical region C1_2 PF03107.16 gi|435849905|ref|YP_007301846.1| - 0.12 12.7 0.5 0.29 11.5 0.5 1.7 1 0 0 1 1 1 0 C1 domain RMI2 PF16100.5 gi|435849906|ref|YP_007301847.1| - 0.0011 18.8 0.1 0.018 14.9 0.0 2.4 2 1 1 3 3 3 1 RecQ-mediated genome instability protein 2 RuvB_C PF05491.13 gi|435849906|ref|YP_007301847.1| - 0.044 13.7 0.2 0.089 12.7 0.2 1.5 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain DUF1344 PF07076.11 gi|435849907|ref|YP_007301848.1| - 0.069 13.1 0.3 2.9 7.8 0.0 3.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1344) Type2_restr_D3 PF16902.5 gi|435849907|ref|YP_007301848.1| - 0.079 12.9 1.0 0.23 11.4 1.0 1.8 1 0 0 1 1 1 0 Type-2 restriction enzyme D3 domain zf-C2HE PF16278.5 gi|435849908|ref|YP_007301849.1| - 0.017 15.6 0.9 0.61 10.6 0.3 2.8 2 0 0 2 2 2 0 C2HE / C2H2 / C2HC zinc-binding finger TFIIS_C PF01096.18 gi|435849908|ref|YP_007301849.1| - 6.5 6.7 7.0 2.5 8.0 0.9 2.8 4 0 0 4 4 4 0 Transcription factor S-II (TFIIS) HEAT_2 PF13646.6 gi|435849909|ref|YP_007301850.1| - 1.4e-58 195.2 3.5 3.3e-12 46.6 0.1 5.5 1 1 5 6 6 6 6 HEAT repeats HEAT_PBS PF03130.16 gi|435849909|ref|YP_007301850.1| - 3.2e-24 83.1 0.3 0.032 14.9 0.0 8.8 9 0 0 9 9 8 5 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|435849909|ref|YP_007301850.1| - 3.4e-17 61.0 0.1 0.00041 20.4 0.0 8.0 8 0 0 8 8 8 2 HEAT repeat RQC PF09382.10 gi|435849909|ref|YP_007301850.1| - 4e-16 58.8 0.7 1.2e-15 57.3 0.1 2.0 2 0 0 2 2 2 1 RQC domain HEAT_EZ PF13513.6 gi|435849909|ref|YP_007301850.1| - 6.8e-11 42.4 0.6 0.21 12.1 0.0 6.3 5 1 1 6 6 6 2 HEAT-like repeat Cnd1 PF12717.7 gi|435849909|ref|YP_007301850.1| - 2.5e-08 34.1 1.3 0.016 15.3 0.1 4.9 2 2 2 4 4 4 3 non-SMC mitotic condensation complex subunit 1 Arm PF00514.23 gi|435849909|ref|YP_007301850.1| - 9.8e-08 31.8 0.3 0.68 10.1 0.0 4.2 3 0 0 3 3 3 3 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.20 gi|435849909|ref|YP_007301850.1| - 1.2e-07 30.7 0.1 0.022 13.3 0.0 3.6 1 1 1 3 3 3 2 Adaptin N terminal region Vitellogenin_N PF01347.22 gi|435849909|ref|YP_007301850.1| - 0.0002 20.0 0.0 0.42 9.0 0.0 3.1 2 1 1 3 3 3 2 Lipoprotein amino terminal region Aconitase_B_N PF11791.8 gi|435849909|ref|YP_007301850.1| - 0.0071 16.4 0.0 25 4.9 0.0 3.7 3 1 1 4 4 4 0 Aconitate B N-terminal domain RasGEF_N_2 PF14663.6 gi|435849909|ref|YP_007301850.1| - 0.02 15.3 1.6 3.7 8.0 0.0 3.8 4 0 0 4 4 4 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain Peptidase_C13 PF01650.18 gi|435849912|ref|YP_007301853.1| - 1.1e-07 31.6 0.0 2.4e-07 30.5 0.0 1.5 1 1 0 1 1 1 1 Peptidase C13 family Peptidase_C14 PF00656.22 gi|435849912|ref|YP_007301853.1| - 1.3e-06 28.5 0.0 3.2e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Caspase domain EF-hand_5 PF13202.6 gi|435849912|ref|YP_007301853.1| - 0.053 13.1 0.0 0.17 11.5 0.0 1.9 1 0 0 1 1 1 0 EF hand Ada_Zn_binding PF02805.16 gi|435849912|ref|YP_007301853.1| - 0.097 12.7 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Metal binding domain of Ada AAA_31 PF13614.6 gi|435849914|ref|YP_007301855.1| - 2.4e-36 125.3 0.3 1.9e-35 122.3 0.2 1.9 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|435849914|ref|YP_007301855.1| - 5.7e-17 62.0 0.1 8.1e-17 61.5 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|435849914|ref|YP_007301855.1| - 6.5e-12 45.3 0.0 1.8e-11 43.8 0.0 1.6 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|435849914|ref|YP_007301855.1| - 8.4e-08 32.0 0.7 2.8e-06 27.0 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|435849914|ref|YP_007301855.1| - 1.5e-07 30.9 1.0 7.6e-07 28.6 1.0 1.9 1 1 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|435849914|ref|YP_007301855.1| - 2.9e-06 26.9 1.3 1.6e-05 24.5 1.3 2.0 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|435849914|ref|YP_007301855.1| - 1.8e-05 24.3 0.0 2.7e-05 23.7 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ VirC1 PF07015.11 gi|435849914|ref|YP_007301855.1| - 0.035 13.4 0.1 0.19 11.0 0.1 1.9 2 0 0 2 2 2 0 VirC1 protein SRP54 PF00448.22 gi|435849914|ref|YP_007301855.1| - 0.71 9.5 3.6 14 5.3 0.3 2.9 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain DDE_Tnp_1 PF01609.21 gi|435849916|ref|YP_007301857.1| - 2.7e-19 69.7 1.4 4.6e-19 68.9 1.4 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|435849916|ref|YP_007301857.1| - 5e-05 23.2 0.3 0.00012 22.0 0.3 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|435849916|ref|YP_007301857.1| - 0.0049 16.9 0.3 0.011 15.7 0.3 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|435849916|ref|YP_007301857.1| - 0.0052 17.1 0.2 0.013 15.9 0.2 1.7 1 0 0 1 1 1 1 Transposase DDE domain OST_P2 PF18235.1 gi|435849916|ref|YP_007301857.1| - 0.16 11.9 0.9 0.42 10.6 0.3 1.9 2 0 0 2 2 2 0 Oligosaccharyltransferase Peripheral 2 domain DNA_methylase PF00145.17 gi|435849917|ref|YP_007301858.1| - 1.8e-76 257.7 0.0 1.5e-75 254.7 0.0 1.9 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase Tox-MPTase2 PF15638.6 gi|435849920|ref|YP_007301861.1| - 0.13 12.0 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Metallopeptidase toxin 2 Fer4_NifH PF00142.18 gi|435849920|ref|YP_007301861.1| - 0.18 11.2 0.1 0.21 11.0 0.1 1.1 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family zinc_ribbon_15 PF17032.5 gi|435849922|ref|YP_007301863.1| - 0.0034 18.1 1.5 0.0047 17.6 1.5 1.2 1 0 0 1 1 1 1 zinc-ribbon family zf-C3HC4_5 PF17121.5 gi|435849922|ref|YP_007301863.1| - 0.13 12.1 2.6 0.21 11.5 2.6 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Peptidase_S13 PF02113.15 gi|435849922|ref|YP_007301863.1| - 0.15 10.8 0.0 0.18 10.5 0.0 1.1 1 0 0 1 1 1 0 D-Ala-D-Ala carboxypeptidase 3 (S13) family Phage_XkdX PF09693.10 gi|435849923|ref|YP_007301864.1| - 0.1 12.7 0.0 0.5 10.4 0.1 2.1 2 0 0 2 2 2 0 Phage uncharacterised protein (Phage_XkdX) N6_N4_Mtase PF01555.18 gi|435849924|ref|YP_007301865.1| - 2.5e-18 66.6 0.3 1.8e-10 41.0 0.0 2.2 1 1 1 2 2 2 2 DNA methylase Methyltransf_11 PF08241.12 gi|435849924|ref|YP_007301865.1| - 0.025 15.2 0.0 0.18 12.5 0.0 2.6 3 2 1 4 4 4 0 Methyltransferase domain DUF5572 PF17733.1 gi|435849924|ref|YP_007301865.1| - 0.13 12.1 0.4 0.4 10.5 0.2 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5572) Rtf2 PF04641.12 gi|435849925|ref|YP_007301866.1| - 0.071 12.5 1.6 0.12 11.8 1.6 1.3 1 0 0 1 1 1 0 Rtf2 RING-finger DUF3970 PF13113.6 gi|435849925|ref|YP_007301866.1| - 0.089 13.0 0.1 3.2 8.0 0.1 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3970) Med27 PF11571.8 gi|435849925|ref|YP_007301866.1| - 0.34 11.3 4.7 0.61 10.5 4.0 1.7 1 1 0 1 1 1 0 Mediator complex subunit 27 Yqai PF09466.10 gi|435849927|ref|YP_007301868.1| - 0.025 14.9 0.0 0.04 14.2 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein Yqai rhaM PF05336.13 gi|435849927|ref|YP_007301868.1| - 0.041 13.9 0.0 0.053 13.6 0.0 1.3 1 0 0 1 1 1 0 L-rhamnose mutarotase RNase_H_2 PF13482.6 gi|435849930|ref|YP_007301871.1| - 1.3e-06 28.5 3.5 0.00014 21.9 0.3 2.6 1 1 1 2 2 2 2 RNase_H superfamily DUF723 PF05265.13 gi|435849930|ref|YP_007301871.1| - 0.05 13.5 4.5 0.076 13.0 0.3 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF723) DNA_pol_B_exo2 PF10108.9 gi|435849930|ref|YP_007301871.1| - 0.052 13.2 0.0 0.097 12.3 0.0 1.4 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_methylase PF00145.17 gi|435849933|ref|YP_007301874.1| - 1.2e-36 126.7 0.0 5e-36 124.7 0.0 1.7 1 1 1 2 2 2 1 C-5 cytosine-specific DNA methylase Corona_M PF01635.18 gi|435849934|ref|YP_007301875.1| - 1.1 8.6 9.6 1.2 8.4 9.2 1.4 1 1 0 1 1 1 0 Coronavirus M matrix/glycoprotein EpuA PF11772.8 gi|435849936|ref|YP_007301877.1| - 0.15 11.8 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 DNA-directed RNA polymerase subunit beta NPCBM_assoc PF10633.9 gi|435849937|ref|YP_007301878.1| - 1.4e-06 28.4 1.7 0.061 13.6 0.2 4.6 4 1 0 4 4 4 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF4251 PF14059.6 gi|435849937|ref|YP_007301878.1| - 0.00025 21.0 2.8 1.9 8.4 0.2 4.0 2 1 2 4 4 4 2 Domain of unknown function (DUF4251) DUF4352 PF11611.8 gi|435849937|ref|YP_007301878.1| - 0.00054 20.2 1.5 0.11 12.8 0.2 3.5 2 1 0 3 3 3 1 Domain of unknown function (DUF4352) fn3_5 PF06280.12 gi|435849937|ref|YP_007301878.1| - 0.0013 19.4 2.2 0.32 11.7 0.2 3.7 1 1 0 2 2 2 1 Fn3-like domain DUF1573 PF07610.11 gi|435849937|ref|YP_007301878.1| - 0.015 15.3 1.6 1.9 8.6 0.1 3.8 2 2 0 2 2 2 0 Protein of unknown function (DUF1573) BACON PF13004.7 gi|435849937|ref|YP_007301878.1| - 0.017 15.1 3.2 0.95 9.5 0.1 3.8 3 0 0 3 3 3 0 Putative binding domain, N-terminal DUF11 PF01345.18 gi|435849937|ref|YP_007301878.1| - 0.022 15.0 2.0 0.68 10.3 0.5 3.4 1 1 1 2 2 2 0 Domain of unknown function DUF11 N_BRCA1_IG PF16158.5 gi|435849937|ref|YP_007301878.1| - 0.024 15.3 0.0 2.8 8.7 0.0 2.7 2 1 1 3 3 3 0 Ig-like domain from next to BRCA1 gene DUF4832 PF16116.5 gi|435849937|ref|YP_007301878.1| - 0.055 13.3 0.2 4.4 7.1 0.0 2.9 2 2 0 2 2 2 0 Domain of unknown function (DUF4832) TIG_2 PF18020.1 gi|435849937|ref|YP_007301878.1| - 0.092 13.4 0.0 0.36 11.5 0.0 2.0 2 0 0 2 2 2 0 TIG domain found in plexin ETF_QO PF05187.13 gi|435849937|ref|YP_007301878.1| - 0.1 12.8 0.0 0.44 10.7 0.0 2.0 2 0 0 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S DUF2808 PF10989.8 gi|435849937|ref|YP_007301878.1| - 0.13 12.3 1.6 0.7 9.9 0.1 2.8 2 2 0 2 2 2 0 Protein of unknown function (DUF2808) Mfa_like_1 PF13149.6 gi|435849937|ref|YP_007301878.1| - 0.41 10.6 10.2 0.091 12.8 2.6 3.0 2 2 1 3 3 3 0 Fimbrillin-like CARDB PF07705.11 gi|435849937|ref|YP_007301878.1| - 0.44 10.8 7.1 6.7 7.0 0.5 3.9 2 1 3 5 5 5 0 CARDB TF_Zn_Ribbon PF08271.12 gi|435849938|ref|YP_007301879.1| - 0.0016 17.9 0.7 0.078 12.5 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding HypA PF01155.19 gi|435849938|ref|YP_007301879.1| - 0.0019 18.2 0.4 0.002 18.1 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|435849938|ref|YP_007301879.1| - 0.035 14.2 1.6 0.058 13.5 1.6 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|435849938|ref|YP_007301879.1| - 0.042 14.2 2.2 0.27 11.6 0.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C2HC5 PF06221.13 gi|435849938|ref|YP_007301879.1| - 0.043 13.8 2.3 0.39 10.8 2.3 2.0 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-C2H2_4 PF13894.6 gi|435849938|ref|YP_007301879.1| - 0.048 14.5 3.6 1.1 10.3 0.3 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_6 PF14599.6 gi|435849938|ref|YP_007301879.1| - 0.051 13.6 2.2 0.072 13.1 2.2 1.2 1 0 0 1 1 1 0 Zinc-ribbon zinc_ribbon_4 PF13717.6 gi|435849938|ref|YP_007301879.1| - 0.6 10.1 5.6 3.3 7.7 5.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-Sec23_Sec24 PF04810.15 gi|435849938|ref|YP_007301879.1| - 1 9.5 5.4 41 4.3 5.4 2.1 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger OrfB_Zn_ribbon PF07282.11 gi|435849938|ref|YP_007301879.1| - 4.7 7.2 6.3 3.1 7.8 1.4 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Disaggr_repeat PF06848.11 gi|435849939|ref|YP_007301880.1| - 1.6e-92 308.2 6.0 3.3e-92 307.1 6.0 1.6 1 0 0 1 1 1 1 Disaggregatase related repeat Disaggr_assoc PF08480.10 gi|435849939|ref|YP_007301880.1| - 3.9e-37 128.0 22.8 7.8e-36 123.7 18.5 2.7 2 0 0 2 2 2 2 Disaggregatase related Beta_helix PF13229.6 gi|435849939|ref|YP_007301880.1| - 4.7e-12 46.0 52.6 6.7e-08 32.5 18.2 3.6 2 1 1 3 3 3 2 Right handed beta helix region PKD PF00801.20 gi|435849939|ref|YP_007301880.1| - 1.9e-11 43.6 4.1 1.9e-11 43.6 4.1 2.4 1 1 1 2 2 2 1 PKD domain TGFb_propeptide PF00688.18 gi|435849939|ref|YP_007301880.1| - 0.015 15.0 0.0 1.2 8.8 0.0 2.6 2 1 0 2 2 2 0 TGF-beta propeptide lci PF12197.8 gi|435849939|ref|YP_007301880.1| - 0.23 11.3 3.9 2.6 7.9 0.9 3.2 2 0 0 2 2 2 0 Bacillus cereus group antimicrobial protein FGE-sulfatase PF03781.16 gi|435849940|ref|YP_007301881.1| - 2.1e-48 165.2 8.4 1.2e-47 162.7 8.4 2.1 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 AAA_22 PF13401.6 gi|435849941|ref|YP_007301882.1| - 1.2e-14 54.8 0.0 2.5e-14 53.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|435849941|ref|YP_007301882.1| - 6.8e-10 39.6 0.0 1.5e-08 35.2 0.0 2.4 1 1 0 1 1 1 1 AAA ATPase domain Cdc6_C PF09079.11 gi|435849941|ref|YP_007301882.1| - 2.5e-09 37.0 1.3 9.8e-09 35.1 0.4 2.4 3 0 0 3 3 3 1 CDC6, C terminal winged helix domain AAA PF00004.29 gi|435849941|ref|YP_007301882.1| - 2e-07 31.5 0.1 6.7e-07 29.8 0.0 2.0 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|435849941|ref|YP_007301882.1| - 1.1e-05 25.4 0.2 2.6e-05 24.2 0.0 1.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|435849941|ref|YP_007301882.1| - 0.00012 21.6 0.0 0.0002 20.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein NACHT PF05729.12 gi|435849941|ref|YP_007301882.1| - 0.00033 20.6 0.0 0.00081 19.3 0.0 1.7 1 0 0 1 1 1 1 NACHT domain SWI2_SNF2 PF18766.1 gi|435849941|ref|YP_007301882.1| - 0.0086 15.8 0.0 0.021 14.5 0.0 1.6 1 0 0 1 1 1 1 SWI2/SNF2 ATPase AAA_5 PF07728.14 gi|435849941|ref|YP_007301882.1| - 0.011 15.8 0.3 0.092 12.7 0.3 2.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|435849941|ref|YP_007301882.1| - 0.015 15.0 0.0 0.029 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_assoc_2 PF16193.5 gi|435849941|ref|YP_007301882.1| - 0.019 15.3 0.1 0.052 13.9 0.1 1.7 1 0 0 1 1 1 0 AAA C-terminal domain AAA_19 PF13245.6 gi|435849941|ref|YP_007301882.1| - 0.027 14.8 0.4 0.17 12.2 0.1 2.3 2 1 0 2 2 2 0 AAA domain DUF815 PF05673.13 gi|435849941|ref|YP_007301882.1| - 0.032 13.4 0.0 0.08 12.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Bac_DnaA PF00308.18 gi|435849941|ref|YP_007301882.1| - 0.033 14.0 0.0 18 5.1 0.0 3.1 3 0 0 3 3 3 0 Bacterial dnaA protein DUF2075 PF09848.9 gi|435849941|ref|YP_007301882.1| - 0.05 12.8 0.0 0.085 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.22 gi|435849941|ref|YP_007301882.1| - 0.05 14.0 0.1 0.25 11.8 0.0 2.1 2 0 0 2 2 2 0 RNA helicase NB-ARC PF00931.22 gi|435849941|ref|YP_007301882.1| - 0.05 12.8 0.0 0.082 12.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_11 PF13086.6 gi|435849941|ref|YP_007301882.1| - 0.086 12.6 0.3 0.17 11.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|435849941|ref|YP_007301882.1| - 0.14 11.5 0.0 0.26 10.6 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ResIII PF04851.15 gi|435849941|ref|YP_007301882.1| - 0.16 12.0 0.3 0.46 10.5 0.1 1.9 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanomethylovorans_hollandica_DSM_15978_uid184864/NC_019972.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanomethylovorans_hollandica_DSM_15978_uid184864/NC_019972.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanomethylovorans_hollandica_DSM_15978_uid184864/NC_019972.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanomethylovorans_hollandica_DSM_15978_uid184864/NC_019972.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 15:48:28 2019 # [ok]