# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF1724 PF08350.5 gi|410669211|ref|YP_006921582.1| - 2.9e-15 55.5 0.1 5.1e-15 54.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) DUF4163 PF13739.1 gi|410669211|ref|YP_006921582.1| - 0.15 12.8 1.1 0.2 12.4 0.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4163) MSP7_C PF12948.2 gi|410669211|ref|YP_006921582.1| - 0.17 12.0 2.3 0.21 11.8 0.8 1.6 1 1 0 1 1 1 0 MSP7-like protein C-terminal domain DUF772 PF05598.6 gi|410669212|ref|YP_006921583.1| - 2.1e-21 75.6 0.0 4.2e-21 74.6 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|410669212|ref|YP_006921583.1| - 5.3e-13 49.0 2.2 3.9e-11 42.9 1.5 2.3 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|410669212|ref|YP_006921583.1| - 0.00017 21.2 0.1 0.00031 20.3 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|410669212|ref|YP_006921583.1| - 0.00033 20.4 0.1 0.00073 19.3 0.0 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|410669212|ref|YP_006921583.1| - 0.0017 18.3 0.4 0.0033 17.4 0.3 1.5 1 0 0 1 1 1 1 Transposase DDE domain LysE PF01810.13 gi|410669215|ref|YP_006921586.1| - 1.3e-23 83.2 17.2 1.6e-23 82.9 11.9 1.1 1 0 0 1 1 1 1 LysE type translocator Arif-1 PF06770.6 gi|410669215|ref|YP_006921586.1| - 3.1 7.1 5.2 0.73 9.1 0.7 1.9 1 1 1 2 2 2 0 Actin-rearrangement-inducing factor (Arif-1) DUF1724 PF08350.5 gi|410669216|ref|YP_006921587.1| - 7.3e-18 63.8 0.0 1.4e-17 62.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) PLDc_2 PF13091.1 gi|410669216|ref|YP_006921587.1| - 0.023 14.4 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 PLD-like domain HTH_20 PF12840.2 gi|410669216|ref|YP_006921587.1| - 0.088 12.6 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1724 PF08350.5 gi|410669217|ref|YP_006921588.1| - 4.8e-14 51.6 0.3 1.1e-13 50.4 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) DUF1724 PF08350.5 gi|410669218|ref|YP_006921589.1| - 1.4e-17 62.9 0.4 5.1e-17 61.1 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) PPP1R35_C PF15503.1 gi|410669218|ref|YP_006921589.1| - 0.052 13.0 0.1 0.082 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein phosphatase 1 regulatory subunit 35 C-terminus DDE_3 PF13358.1 gi|410669219|ref|YP_006921590.1| - 2.8e-23 82.2 0.1 3.9e-23 81.8 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|410669219|ref|YP_006921590.1| - 1.2e-09 38.2 0.0 2.1e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|410669219|ref|YP_006921590.1| - 9.1e-09 34.7 0.2 1.1e-08 34.5 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|410669219|ref|YP_006921590.1| - 0.009 14.7 0.0 0.01 14.6 0.0 1.2 1 0 0 1 1 1 1 Rhodopirellula transposase DDE domain DUF3800 PF12686.2 gi|410669219|ref|YP_006921590.1| - 0.047 13.3 0.0 0.057 13.0 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) Ribosomal_S2 PF00318.15 gi|410669219|ref|YP_006921590.1| - 0.05 12.8 3.3 0.58 9.3 2.3 2.0 1 1 0 1 1 1 0 Ribosomal protein S2 HTH_29 PF13551.1 gi|410669220|ref|YP_006921591.1| - 7.1e-17 61.5 0.0 1.1e-16 60.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410669220|ref|YP_006921591.1| - 1e-10 42.2 0.3 2.2e-10 41.2 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|410669220|ref|YP_006921591.1| - 5.9e-09 35.3 0.4 1.2e-08 34.3 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|410669220|ref|YP_006921591.1| - 8.3e-07 28.4 0.1 3.1e-06 26.6 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|410669220|ref|YP_006921591.1| - 8.2e-06 25.7 0.0 2e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_21 PF13276.1 gi|410669220|ref|YP_006921591.1| - 0.031 14.2 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 HTH-like domain HTH_45 PF14947.1 gi|410669221|ref|YP_006921592.1| - 0.022 14.5 0.4 0.048 13.4 0.2 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix RNA_pol_Rpa2_4 PF06883.7 gi|410669221|ref|YP_006921592.1| - 0.07 13.1 0.1 1.1 9.2 0.0 2.2 2 0 0 2 2 2 0 RNA polymerase I, Rpa2 specific domain SOR_SNZ PF01680.12 gi|410669223|ref|YP_006921594.1| - 4.3e-20 72.1 1.2 4.6e-20 72.1 0.8 1.0 1 0 0 1 1 1 1 SOR/SNZ family GSDH PF07995.6 gi|410669225|ref|YP_006921596.1| - 1.8e-44 152.1 0.0 3.3e-44 151.3 0.0 1.4 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Copper-bind PF00127.15 gi|410669225|ref|YP_006921596.1| - 1.5e-10 41.1 0.8 1.7e-09 37.7 0.6 2.3 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|410669225|ref|YP_006921596.1| - 5.2e-10 39.1 0.1 1.7e-09 37.5 0.1 1.8 2 0 0 2 2 2 1 Cupredoxin-like domain SMI1_KNR4 PF09346.5 gi|410669225|ref|YP_006921596.1| - 0.018 15.0 0.1 0.34 10.9 0.1 2.7 3 1 0 3 3 3 0 SMI1 / KNR4 family (SUKH-1) KH_4 PF13083.1 gi|410669225|ref|YP_006921596.1| - 0.025 14.1 0.6 0.062 12.9 0.0 1.9 2 0 0 2 2 2 0 KH domain OrfB_IS605 PF01385.14 gi|410669227|ref|YP_006921598.1| - 5.2e-39 133.9 7.0 3.8e-38 131.1 4.8 1.9 1 1 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|410669227|ref|YP_006921598.1| - 1.1e-19 69.8 0.1 2e-19 68.9 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|410669227|ref|YP_006921598.1| - 3e-11 42.4 0.2 3e-11 42.4 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain zf-piccolo PF05715.8 gi|410669227|ref|YP_006921598.1| - 0.012 15.5 0.3 0.035 14.1 0.2 1.7 1 0 0 1 1 1 0 Piccolo Zn-finger Prok-RING_1 PF14446.1 gi|410669227|ref|YP_006921598.1| - 0.063 13.0 0.5 0.13 12.0 0.4 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|410669227|ref|YP_006921598.1| - 0.091 12.4 1.5 0.66 9.7 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|410669227|ref|YP_006921598.1| - 0.12 12.1 0.2 0.23 11.2 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon Rubredoxin PF00301.15 gi|410669227|ref|YP_006921598.1| - 0.32 10.9 4.5 2.3 8.1 3.1 2.1 1 1 0 1 1 1 0 Rubredoxin FUR PF01475.14 gi|410669228|ref|YP_006921599.1| - 1.4e-17 63.7 0.2 1.6e-17 63.5 0.2 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family PadR PF03551.9 gi|410669228|ref|YP_006921599.1| - 0.0096 15.6 0.0 0.026 14.2 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|410669228|ref|YP_006921599.1| - 0.019 14.6 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|410669228|ref|YP_006921599.1| - 0.1 11.9 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF4182 PF13790.1 gi|410669228|ref|YP_006921599.1| - 0.24 11.1 5.4 0.44 10.3 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4182) AhpC-TSA PF00578.16 gi|410669229|ref|YP_006921600.1| - 4.5e-34 116.8 0.1 6.5e-34 116.2 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.4 gi|410669229|ref|YP_006921600.1| - 1.9e-15 56.1 0.7 3.5e-15 55.3 0.5 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.5 gi|410669229|ref|YP_006921600.1| - 3.6e-12 46.0 0.0 5e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Redoxin DUF4511 PF14974.1 gi|410669229|ref|YP_006921600.1| - 0.052 13.2 0.2 0.12 12.1 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4511) Ferritin PF00210.19 gi|410669230|ref|YP_006921601.1| - 1.1e-06 28.4 0.5 1.4e-06 28.1 0.4 1.1 1 0 0 1 1 1 1 Ferritin-like domain GIIM PF08388.6 gi|410669230|ref|YP_006921601.1| - 0.0046 16.7 0.0 0.0052 16.5 0.0 1.1 1 0 0 1 1 1 1 Group II intron, maturase-specific domain rve_3 PF13683.1 gi|410669230|ref|YP_006921601.1| - 0.056 12.9 0.0 0.087 12.3 0.0 1.5 1 1 0 1 1 1 0 Integrase core domain Clp_N PF02861.15 gi|410669230|ref|YP_006921601.1| - 0.057 13.3 0.5 0.09 12.7 0.0 1.6 2 0 0 2 2 2 0 Clp amino terminal domain peroxidase PF00141.18 gi|410669231|ref|YP_006921602.1| - 2.9e-89 298.4 0.0 3.5e-47 160.8 0.0 2.2 2 0 0 2 2 2 2 Peroxidase Hemerythrin PF01814.18 gi|410669232|ref|YP_006921603.1| - 6.4e-17 61.9 1.5 6.4e-17 61.9 1.0 2.0 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain DUF3492 PF11997.3 gi|410669232|ref|YP_006921603.1| - 0.053 13.0 1.3 0.063 12.8 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3492) Usp PF00582.21 gi|410669233|ref|YP_006921604.1| - 6.8e-33 113.8 0.0 8e-33 113.5 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family GARS_N PF02844.10 gi|410669233|ref|YP_006921604.1| - 0.12 12.8 0.2 0.24 11.8 0.1 1.6 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain DUF1538 PF07556.6 gi|410669234|ref|YP_006921605.1| - 3.2e-24 85.1 3.8 4.2e-24 84.8 2.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) Usp PF00582.21 gi|410669234|ref|YP_006921605.1| - 1.1e-20 74.2 0.1 1.5e-20 73.8 0.1 1.2 1 0 0 1 1 1 1 Universal stress protein family DUF1538 PF07556.6 gi|410669235|ref|YP_006921606.1| - 9.6e-68 227.4 28.5 1.1e-67 227.1 19.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) DUF1538 PF07556.6 gi|410669236|ref|YP_006921607.1| - 1.1e-71 240.3 23.6 1.2e-71 240.1 16.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) P-II PF00543.17 gi|410669237|ref|YP_006921608.1| - 0.00036 20.9 0.4 0.00048 20.5 0.3 1.1 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Usp PF00582.21 gi|410669238|ref|YP_006921609.1| - 7.5e-33 113.6 0.3 9.5e-33 113.3 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family GARS_N PF02844.10 gi|410669238|ref|YP_006921609.1| - 0.025 15.0 0.0 0.047 14.1 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain DUF1786 PF08735.5 gi|410669238|ref|YP_006921609.1| - 0.079 12.1 0.0 0.079 12.1 0.0 1.1 1 0 0 1 1 1 0 Putative pyruvate format-lyase activating enzyme (DUF1786) Peptidase_M10_C PF08548.6 gi|410669238|ref|YP_006921609.1| - 0.12 11.9 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Peptidase M10 serralysin C terminal DUF2456 PF10445.4 gi|410669240|ref|YP_006921611.1| - 0.11 12.3 9.2 1.2 9.1 0.2 3.8 3 1 0 3 3 3 0 Protein of unknown function (DUF2456) PAS_9 PF13426.1 gi|410669241|ref|YP_006921612.1| - 4e-43 146.0 1.1 4.9e-12 46.1 0.0 5.7 5 1 0 5 5 5 5 PAS domain HATPase_c PF02518.21 gi|410669241|ref|YP_006921612.1| - 4.2e-32 110.1 0.3 1.1e-31 108.8 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|410669241|ref|YP_006921612.1| - 4.8e-32 110.2 0.0 4.8e-12 45.9 0.0 5.7 5 1 0 5 5 5 5 PAS fold PAS PF00989.19 gi|410669241|ref|YP_006921612.1| - 2e-27 95.2 0.0 1.4e-07 31.2 0.0 5.9 6 0 0 6 6 6 4 PAS fold PAS_8 PF13188.1 gi|410669241|ref|YP_006921612.1| - 1.7e-25 87.9 0.0 5.3e-08 32.4 0.0 5.8 5 0 0 5 5 5 4 PAS domain PAS_3 PF08447.6 gi|410669241|ref|YP_006921612.1| - 1.2e-24 86.2 0.0 8.1e-19 67.5 0.0 4.4 4 1 0 4 4 4 2 PAS fold Response_reg PF00072.19 gi|410669241|ref|YP_006921612.1| - 1e-23 83.4 1.6 2.3e-23 82.3 0.4 2.1 2 0 0 2 2 2 1 Response regulator receiver domain HisKA PF00512.20 gi|410669241|ref|YP_006921612.1| - 1.7e-19 69.5 4.9 2.1e-19 69.2 0.1 3.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|410669241|ref|YP_006921612.1| - 3.8e-13 49.6 0.2 0.00038 20.7 0.0 4.7 4 1 0 4 4 4 3 PAS domain GAF_2 PF13185.1 gi|410669241|ref|YP_006921612.1| - 0.0032 17.9 0.0 0.033 14.6 0.0 2.4 2 0 0 2 2 2 1 GAF domain HATPase_c_3 PF13589.1 gi|410669241|ref|YP_006921612.1| - 0.022 14.4 0.1 0.068 12.8 0.1 1.8 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NosD PF05048.8 gi|410669242|ref|YP_006921613.1| - 1.1e-29 103.2 99.1 1.7e-15 56.8 14.3 5.9 3 1 3 6 6 6 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|410669242|ref|YP_006921613.1| - 1.4e-20 73.6 102.5 7.6e-11 42.0 20.7 5.3 2 1 3 5 5 5 4 Right handed beta helix region Peptidase_C1 PF00112.18 gi|410669242|ref|YP_006921613.1| - 6.5e-10 39.2 0.3 1.5e-09 38.0 0.2 1.5 1 0 0 1 1 1 1 Papain family cysteine protease DUF772 PF05598.6 gi|410669243|ref|YP_006921614.1| - 4.5e-21 74.5 0.1 1.8e-20 72.6 0.0 1.9 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|410669243|ref|YP_006921614.1| - 1.8e-12 47.2 0.8 9.7e-11 41.6 0.5 2.2 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|410669243|ref|YP_006921614.1| - 0.0002 21.0 0.1 0.00036 20.1 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|410669243|ref|YP_006921614.1| - 0.00031 20.5 0.1 0.00058 19.6 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|410669243|ref|YP_006921614.1| - 0.018 15.0 0.1 0.034 14.1 0.1 1.4 1 0 0 1 1 1 0 Transposase DDE domain HTH_33 PF13592.1 gi|410669244|ref|YP_006921615.1| - 2.2e-09 36.7 0.1 3.2e-09 36.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410669244|ref|YP_006921615.1| - 5.8e-08 33.4 0.1 1.9e-07 31.8 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.1 gi|410669244|ref|YP_006921615.1| - 3.2e-07 30.4 0.0 6e-07 29.5 0.0 1.4 2 0 0 2 2 2 1 Winged helix-turn helix HTH_21 PF13276.1 gi|410669244|ref|YP_006921615.1| - 0.011 15.7 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 0 HTH-like domain DDE_3 PF13358.1 gi|410669245|ref|YP_006921616.1| - 2e-23 82.7 0.1 2.8e-23 82.2 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|410669245|ref|YP_006921616.1| - 1.2e-09 38.3 0.0 2.1e-09 37.4 0.0 1.4 2 0 0 2 2 2 1 Integrase core domain DDE_1 PF03184.14 gi|410669245|ref|YP_006921616.1| - 2.2e-08 33.5 0.1 2.5e-08 33.3 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|410669245|ref|YP_006921616.1| - 0.026 13.2 0.0 0.029 13.1 0.0 1.2 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain Ribosomal_S2 PF00318.15 gi|410669245|ref|YP_006921616.1| - 0.032 13.4 2.0 0.36 10.0 1.4 2.0 1 1 0 1 1 1 0 Ribosomal protein S2 DUF3800 PF12686.2 gi|410669245|ref|YP_006921616.1| - 0.061 12.9 0.1 0.067 12.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3800) Flavodoxin_2 PF02525.12 gi|410669246|ref|YP_006921617.1| - 2.7e-35 121.6 0.0 3e-35 121.5 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.10 gi|410669246|ref|YP_006921617.1| - 3.1e-13 49.4 0.0 6.6e-13 48.4 0.0 1.5 2 0 0 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_4 PF12682.2 gi|410669246|ref|YP_006921617.1| - 0.0001 21.7 0.0 0.00014 21.2 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Dabb PF07876.7 gi|410669247|ref|YP_006921618.1| - 5.7e-26 90.7 0.4 6.3e-26 90.6 0.3 1.0 1 0 0 1 1 1 1 Stress responsive A/B Barrel Domain ABM PF03992.11 gi|410669247|ref|YP_006921618.1| - 0.11 12.5 0.1 0.12 12.3 0.1 1.4 1 1 0 1 1 1 0 Antibiotic biosynthesis monooxygenase PhoU PF01895.14 gi|410669249|ref|YP_006921620.1| - 2.2e-13 50.4 7.9 1.3e-09 38.3 0.6 3.3 3 0 0 3 3 3 2 PhoU domain Antitoxin-MazE PF04014.13 gi|410669249|ref|YP_006921620.1| - 0.00011 21.8 0.0 0.00021 20.9 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PBP_like_2 PF12849.2 gi|410669250|ref|YP_006921621.1| - 3.1e-16 59.6 3.0 4.5e-16 59.1 2.1 1.3 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|410669250|ref|YP_006921621.1| - 0.0015 17.5 0.0 0.0028 16.6 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|410669250|ref|YP_006921621.1| - 0.016 14.8 0.0 0.21 11.1 0.0 2.2 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein DUF1628 PF07790.6 gi|410669250|ref|YP_006921621.1| - 0.67 10.7 6.8 2 9.2 4.7 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) MgtE PF01769.11 gi|410669252|ref|YP_006921623.1| - 1.7e-21 76.9 11.2 1.7e-21 76.9 7.7 1.5 2 0 0 2 2 2 1 Divalent cation transporter DUF1129 PF06570.6 gi|410669252|ref|YP_006921623.1| - 6.5 6.0 8.0 11 5.2 5.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) MgtE PF01769.11 gi|410669253|ref|YP_006921624.1| - 3e-16 59.9 6.8 3e-16 59.9 4.7 1.4 2 0 0 2 2 2 1 Divalent cation transporter TrkA_C PF02080.16 gi|410669254|ref|YP_006921625.1| - 1.3e-26 91.9 0.1 6.1e-13 48.1 0.0 2.6 2 1 1 3 3 3 2 TrkA-C domain PhoU PF01895.14 gi|410669254|ref|YP_006921625.1| - 9.4e-16 58.0 11.7 4.8e-08 33.3 3.9 2.6 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|410669254|ref|YP_006921625.1| - 0.00017 20.8 5.6 0.11 11.6 0.9 2.2 2 0 0 2 2 2 2 Protein of unknown function DUF47 Rib_5-P_isom_A PF06026.9 gi|410669255|ref|YP_006921626.1| - 4.3e-61 205.2 0.7 5.5e-61 204.8 0.5 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|410669255|ref|YP_006921626.1| - 4.2e-07 29.7 2.5 0.0001 22.0 1.7 2.3 1 1 0 1 1 1 1 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|410669255|ref|YP_006921626.1| - 0.00054 18.9 0.7 0.0017 17.2 0.1 1.9 1 1 1 2 2 2 1 Putative sugar-binding domain CoA_trans PF01144.18 gi|410669255|ref|YP_006921626.1| - 0.083 12.0 0.6 0.19 10.8 0.1 1.8 1 1 0 2 2 2 0 Coenzyme A transferase tRNA-synt_2 PF00152.15 gi|410669256|ref|YP_006921627.1| - 2.1e-99 332.5 0.1 2.6e-99 332.1 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|410669256|ref|YP_006921627.1| - 1.1e-14 53.9 0.1 2e-14 53.1 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|410669256|ref|YP_006921627.1| - 0.00032 19.9 0.5 0.014 14.6 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) Asparaginase PF00710.15 gi|410669257|ref|YP_006921628.1| - 1.5e-89 300.0 0.3 1.7e-89 299.7 0.2 1.1 1 0 0 1 1 1 1 Asparaginase Lyase_1 PF00206.15 gi|410669258|ref|YP_006921629.1| - 3.7e-64 216.8 0.0 6.4e-64 216.0 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|410669258|ref|YP_006921629.1| - 6e-11 42.2 0.0 2.1e-10 40.5 0.0 2.0 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal DnaJ PF00226.26 gi|410669259|ref|YP_006921630.1| - 5.5e-08 32.4 0.1 9.9e-08 31.6 0.1 1.5 1 0 0 1 1 1 1 DnaJ domain PfUIS3 PF11567.3 gi|410669259|ref|YP_006921630.1| - 0.00068 19.7 1.5 0.0012 18.9 1.0 1.5 1 1 0 1 1 1 1 Plasmodium falciparum UIS3 membrane protein CheW PF01584.14 gi|410669260|ref|YP_006921631.1| - 1.2e-38 131.7 1.9 1.3e-38 131.5 1.3 1.0 1 0 0 1 1 1 1 CheW-like domain AAL_decarboxy PF03306.8 gi|410669261|ref|YP_006921632.1| - 5.9e-87 290.3 0.1 7e-87 290.0 0.1 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase HATPase_c PF02518.21 gi|410669264|ref|YP_006921635.1| - 6e-32 109.6 1.3 1.5e-31 108.3 0.1 2.3 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|410669264|ref|YP_006921635.1| - 1.2e-18 67.3 0.1 5.2e-08 33.2 0.0 2.6 2 0 0 2 2 2 2 PAS domain HisKA PF00512.20 gi|410669264|ref|YP_006921635.1| - 7.8e-18 64.2 0.0 2.2e-17 62.7 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|410669264|ref|YP_006921635.1| - 1.7e-14 53.5 0.0 3.8e-06 26.6 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|410669264|ref|YP_006921635.1| - 1.2e-11 44.0 0.1 1.9e-05 24.3 0.0 2.9 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.1 gi|410669264|ref|YP_006921635.1| - 1.7e-10 41.0 0.0 2.9e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.5 gi|410669264|ref|YP_006921635.1| - 2.3e-08 34.0 0.0 0.00035 20.5 0.0 2.9 2 1 0 2 2 2 2 PAS fold GAF_2 PF13185.1 gi|410669264|ref|YP_006921635.1| - 0.0011 19.4 0.0 0.0026 18.2 0.0 1.6 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.1 gi|410669264|ref|YP_006921635.1| - 0.0018 17.9 0.2 0.026 14.2 0.0 2.7 3 0 0 3 3 3 1 GHKL domain PAS_7 PF12860.2 gi|410669264|ref|YP_006921635.1| - 0.0037 17.2 0.0 0.05 13.6 0.0 2.7 2 1 0 2 2 2 1 PAS fold PAS_3 PF08447.6 gi|410669264|ref|YP_006921635.1| - 0.006 16.6 0.0 3.9 7.6 0.0 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c_3 PF13589.1 gi|410669264|ref|YP_006921635.1| - 0.018 14.6 0.1 0.042 13.5 0.1 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.21 gi|410669264|ref|YP_006921635.1| - 0.028 14.5 0.0 0.056 13.5 0.0 1.6 1 0 0 1 1 1 0 GAF domain DUF92 PF01940.11 gi|410669266|ref|YP_006921637.1| - 4.1e-70 235.4 17.0 4.1e-70 235.4 11.8 2.4 2 1 0 2 2 2 1 Integral membrane protein DUF92 DUF1616 PF07760.6 gi|410669266|ref|YP_006921637.1| - 0.26 10.3 13.5 0.0068 15.5 4.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1616) DUF1673 PF07895.6 gi|410669266|ref|YP_006921637.1| - 0.7 9.3 7.8 1.9 7.9 1.8 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1673) Cupin_2 PF07883.6 gi|410669267|ref|YP_006921638.1| - 1.4e-16 59.7 0.0 3.2e-16 58.5 0.0 1.6 2 0 0 2 2 2 1 Cupin domain HTH_19 PF12844.2 gi|410669267|ref|YP_006921638.1| - 1.9e-08 34.1 0.0 3e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|410669267|ref|YP_006921638.1| - 1.2e-07 31.4 0.0 1.9e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|410669267|ref|YP_006921638.1| - 7.4e-07 29.2 0.0 1e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain EutQ PF06249.7 gi|410669267|ref|YP_006921638.1| - 0.0021 17.6 0.0 0.0036 16.8 0.0 1.3 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ MannoseP_isomer PF01050.13 gi|410669267|ref|YP_006921638.1| - 0.0038 16.8 0.0 0.0055 16.3 0.0 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.14 gi|410669267|ref|YP_006921638.1| - 0.0096 15.6 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Phage_CI_repr PF07022.8 gi|410669267|ref|YP_006921638.1| - 0.014 15.4 0.0 0.024 14.7 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_26 PF13443.1 gi|410669267|ref|YP_006921638.1| - 0.12 12.5 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Cupin_3 PF05899.7 gi|410669267|ref|YP_006921638.1| - 0.12 11.7 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) AMP-binding PF00501.23 gi|410669268|ref|YP_006921639.1| - 5.6e-82 275.3 0.0 7.1e-82 275.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|410669268|ref|YP_006921639.1| - 2.6e-19 69.9 2.0 3e-19 69.7 0.5 1.7 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Fer4_7 PF12838.2 gi|410669269|ref|YP_006921640.1| - 5e-11 42.8 10.5 6.5e-11 42.4 7.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410669269|ref|YP_006921640.1| - 1.7e-08 34.1 4.8 2.2e-08 33.8 3.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410669269|ref|YP_006921640.1| - 1e-06 28.4 21.4 1.7e-05 24.5 7.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|410669269|ref|YP_006921640.1| - 1.2e-06 28.4 20.5 8.1e-06 25.7 7.3 1.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410669269|ref|YP_006921640.1| - 1.7e-06 28.2 11.2 3.4e-06 27.2 7.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|410669269|ref|YP_006921640.1| - 2.5e-06 26.8 15.1 0.00012 21.5 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|410669269|ref|YP_006921640.1| - 3.1e-06 26.7 13.0 0.0041 16.9 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|410669269|ref|YP_006921640.1| - 4.6e-05 23.6 11.1 0.04 14.2 1.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410669269|ref|YP_006921640.1| - 7e-05 22.5 16.6 0.007 16.2 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|410669269|ref|YP_006921640.1| - 8.2e-05 23.2 12.0 0.0025 18.5 8.4 2.1 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|410669269|ref|YP_006921640.1| - 0.00028 20.9 14.5 0.051 13.9 2.2 2.2 1 1 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|410669269|ref|YP_006921640.1| - 0.00053 20.5 5.8 0.19 12.3 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|410669269|ref|YP_006921640.1| - 0.0012 19.1 8.1 0.16 12.3 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|410669269|ref|YP_006921640.1| - 0.0013 19.1 13.4 0.098 13.0 1.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|410669269|ref|YP_006921640.1| - 0.01 16.3 19.0 0.15 12.7 4.4 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Peptidase_S31 PF05578.7 gi|410669269|ref|YP_006921640.1| - 0.18 10.9 0.6 0.23 10.6 0.4 1.1 1 0 0 1 1 1 0 Pestivirus NS3 polyprotein peptidase S31 P12 PF12669.2 gi|410669269|ref|YP_006921640.1| - 0.93 9.7 5.0 0.87 9.8 0.1 2.1 2 0 0 2 2 2 0 Virus attachment protein p12 family POR_N PF01855.14 gi|410669270|ref|YP_006921641.1| - 1.1e-61 208.2 0.0 1.5e-61 207.8 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|410669270|ref|YP_006921641.1| - 5.4e-06 26.3 0.0 1e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|410669270|ref|YP_006921641.1| - 0.00012 21.5 0.1 0.00019 20.9 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transket_pyr PF02779.19 gi|410669270|ref|YP_006921641.1| - 0.043 13.2 0.0 0.075 12.5 0.0 1.4 1 0 0 1 1 1 0 Transketolase, pyrimidine binding domain POR PF01558.13 gi|410669271|ref|YP_006921642.1| - 6.9e-38 130.2 0.1 1.1e-37 129.6 0.0 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|410669271|ref|YP_006921642.1| - 2.8e-23 82.1 0.1 5.3e-23 81.2 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 7kD_coat PF02495.12 gi|410669271|ref|YP_006921642.1| - 0.15 11.5 0.3 0.34 10.3 0.2 1.6 1 0 0 1 1 1 0 7kD viral coat protein E1_dh PF00676.15 gi|410669271|ref|YP_006921642.1| - 0.39 9.3 2.2 0.3 9.7 0.5 1.5 2 0 0 2 2 2 0 Dehydrogenase E1 component Thioredoxin PF00085.15 gi|410669272|ref|YP_006921643.1| - 2.2e-18 65.8 0.0 2.5e-18 65.6 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|410669272|ref|YP_006921643.1| - 8e-08 32.4 0.6 3.2e-06 27.3 0.4 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain AhpC-TSA PF00578.16 gi|410669272|ref|YP_006921643.1| - 0.00037 20.1 0.1 0.00056 19.5 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_7 PF13899.1 gi|410669272|ref|YP_006921643.1| - 0.0016 18.3 0.0 0.0023 17.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|410669272|ref|YP_006921643.1| - 0.0055 16.4 0.0 0.0088 15.8 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_6 PF13848.1 gi|410669272|ref|YP_006921643.1| - 0.011 15.5 0.0 0.014 15.2 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin-like domain Redoxin PF08534.5 gi|410669272|ref|YP_006921643.1| - 0.015 14.8 0.0 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 Redoxin LemA PF04011.7 gi|410669273|ref|YP_006921644.1| - 4.8e-63 211.6 4.6 5.2e-63 211.5 3.2 1.0 1 0 0 1 1 1 1 LemA family Chordopox_A13L PF05961.6 gi|410669273|ref|YP_006921644.1| - 0.025 14.4 0.6 0.051 13.5 0.4 1.6 1 0 0 1 1 1 0 Chordopoxvirus A13L protein Tht1 PF04163.7 gi|410669273|ref|YP_006921644.1| - 0.093 11.1 0.8 0.11 10.8 0.6 1.1 1 0 0 1 1 1 0 Tht1-like nuclear fusion protein DUF4233 PF14017.1 gi|410669273|ref|YP_006921644.1| - 0.094 12.6 1.2 0.14 12.1 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4233) Lectin_N PF03954.9 gi|410669273|ref|YP_006921644.1| - 0.11 11.8 0.6 0.28 10.5 0.0 1.8 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain DUF948 PF06103.6 gi|410669273|ref|YP_006921644.1| - 0.59 10.0 3.2 2.2 8.1 2.2 2.2 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF2207 PF09972.4 gi|410669274|ref|YP_006921645.1| - 7.7e-118 394.2 2.9 9e-118 394.0 2.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) UPF0104 PF03706.8 gi|410669274|ref|YP_006921645.1| - 0.0034 16.7 1.3 0.0055 16.0 0.1 1.8 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0104) Glucos_trans_II PF14264.1 gi|410669274|ref|YP_006921645.1| - 0.26 10.2 9.3 0.11 11.4 0.6 2.6 3 0 0 3 3 3 0 Glucosyl transferase GtrII AIM24 PF01987.12 gi|410669275|ref|YP_006921646.1| - 1.9e-41 141.8 0.4 2.2e-41 141.7 0.3 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 NUDIX PF00293.23 gi|410669276|ref|YP_006921647.1| - 9.6e-17 60.8 0.0 1.6e-16 60.2 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain zf-NADH-PPase PF09297.6 gi|410669276|ref|YP_006921647.1| - 1.1e-07 31.1 1.9 1.9e-07 30.4 1.3 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain NUDIX-like PF09296.6 gi|410669276|ref|YP_006921647.1| - 2.1e-06 27.9 0.0 3.4e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase-like rudimentary NUDIX domain DZR PF12773.2 gi|410669276|ref|YP_006921647.1| - 0.0061 16.3 1.8 0.0065 16.2 0.3 1.7 2 0 0 2 2 2 1 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|410669276|ref|YP_006921647.1| - 0.75 9.5 5.1 4.6 7.0 0.7 3.1 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.1 gi|410669276|ref|YP_006921647.1| - 1.4 8.5 5.7 4.9 6.7 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|410669276|ref|YP_006921647.1| - 2 7.7 6.9 27 4.1 0.7 2.4 1 1 0 1 1 1 0 zinc-ribbon domain DUF2341 PF10102.4 gi|410669277|ref|YP_006921648.1| - 4.7e-22 77.9 0.3 1.1e-21 76.7 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF2341) Glyco_hydro_18 PF00704.23 gi|410669277|ref|YP_006921648.1| - 0.00027 20.4 0.1 0.00067 19.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyl hydrolases family 18 YbbR PF07949.7 gi|410669277|ref|YP_006921648.1| - 0.024 14.7 0.0 0.13 12.4 0.0 2.3 1 0 0 1 1 1 0 YbbR-like protein AMP-binding PF00501.23 gi|410669278|ref|YP_006921649.1| - 5.7e-102 341.2 0.0 6.8e-102 340.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|410669278|ref|YP_006921649.1| - 3.8e-16 59.8 0.0 8.6e-16 58.6 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain 4HBT_2 PF13279.1 gi|410669279|ref|YP_006921650.1| - 7e-11 42.6 0.0 8.6e-11 42.3 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|410669279|ref|YP_006921650.1| - 0.00054 20.0 0.0 0.0008 19.4 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|410669279|ref|YP_006921650.1| - 0.002 17.1 0.0 0.41 9.5 0.0 2.3 1 1 1 2 2 2 2 Acyl-ACP thioesterase Cupin_2 PF07883.6 gi|410669280|ref|YP_006921651.1| - 4.7e-12 45.2 0.1 7.6e-12 44.5 0.0 1.3 1 0 0 1 1 1 1 Cupin domain HTH_31 PF13560.1 gi|410669280|ref|YP_006921651.1| - 3.1e-09 36.8 0.0 4.5e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|410669280|ref|YP_006921651.1| - 4.5e-08 32.8 0.1 6.1e-08 32.3 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|410669280|ref|YP_006921651.1| - 1e-07 31.9 0.0 1.7e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|410669280|ref|YP_006921651.1| - 4.4e-05 23.6 0.0 6.4e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.1 gi|410669280|ref|YP_006921651.1| - 0.0013 18.3 0.5 0.0027 17.2 0.4 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|410669280|ref|YP_006921651.1| - 0.0025 17.5 0.4 0.0041 16.8 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MannoseP_isomer PF01050.13 gi|410669280|ref|YP_006921651.1| - 0.14 11.8 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase AraC_binding PF02311.14 gi|410669280|ref|YP_006921651.1| - 0.14 11.8 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 AraC-like ligand binding domain DUF1699 PF08004.6 gi|410669281|ref|YP_006921652.1| - 2.1e-25 88.7 0.2 2.3e-25 88.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Plexin_cytopl PF08337.7 gi|410669281|ref|YP_006921652.1| - 0.089 11.0 0.0 0.11 10.8 0.0 1.0 1 0 0 1 1 1 0 Plexin cytoplasmic RasGAP domain Imm3 PF14425.1 gi|410669281|ref|YP_006921652.1| - 0.11 12.4 0.1 0.12 12.3 0.1 1.1 1 0 0 1 1 1 0 Immunity protein Imm3 Hydantoinase_A PF01968.13 gi|410669282|ref|YP_006921653.1| - 7.1e-84 281.3 3.0 7.9e-84 281.1 0.1 2.1 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|410669282|ref|YP_006921653.1| - 1.4e-40 138.6 1.0 4.7e-37 127.1 0.0 3.1 3 0 0 3 3 3 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|410669282|ref|YP_006921653.1| - 1.8e-06 26.5 0.8 0.019 13.3 0.1 2.2 2 0 0 2 2 2 2 MutL protein StbA PF06406.6 gi|410669282|ref|YP_006921653.1| - 0.1 11.5 0.0 0.2 10.5 0.0 1.4 1 0 0 1 1 1 0 StbA protein FtsA PF14450.1 gi|410669282|ref|YP_006921653.1| - 0.6 9.9 3.0 6.7 6.5 0.1 2.6 2 1 0 2 2 2 0 Cell division protein FtsA GAF_2 PF13185.1 gi|410669283|ref|YP_006921654.1| - 1e-32 113.6 0.0 1.8e-22 80.4 0.0 3.3 3 0 0 3 3 3 3 GAF domain HATPase_c PF02518.21 gi|410669283|ref|YP_006921654.1| - 1.4e-29 102.0 0.0 2.8e-29 101.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|410669283|ref|YP_006921654.1| - 4.6e-18 65.5 0.0 3.1e-05 24.0 0.0 3.6 3 1 0 3 3 3 3 GAF domain GAF PF01590.21 gi|410669283|ref|YP_006921654.1| - 7.9e-18 65.0 0.0 5e-07 29.9 0.0 3.5 3 0 0 3 3 3 3 GAF domain HisKA PF00512.20 gi|410669283|ref|YP_006921654.1| - 2.8e-13 49.6 0.1 9.3e-13 47.9 0.1 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|410669283|ref|YP_006921654.1| - 1.5e-11 43.6 0.0 1.4e-05 24.8 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_9 PF13426.1 gi|410669283|ref|YP_006921654.1| - 1e-06 29.0 0.1 0.00017 21.9 0.0 2.7 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|410669283|ref|YP_006921654.1| - 2.4e-05 24.0 0.0 0.00036 20.2 0.0 2.5 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.1 gi|410669283|ref|YP_006921654.1| - 0.0015 18.2 1.2 0.0063 16.1 0.0 2.6 3 0 0 3 3 3 1 GHKL domain PAS_4 PF08448.5 gi|410669283|ref|YP_006921654.1| - 0.0026 17.7 0.1 0.013 15.4 0.0 2.3 4 0 0 4 4 3 1 PAS fold HATPase_c_3 PF13589.1 gi|410669283|ref|YP_006921654.1| - 0.015 14.9 0.1 0.047 13.3 0.1 1.8 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|410669283|ref|YP_006921654.1| - 0.016 15.3 0.0 0.043 13.9 0.0 1.8 1 0 0 1 1 1 0 PAS fold SIR2 PF02146.12 gi|410669284|ref|YP_006921655.1| - 4.5e-53 179.6 0.0 5.5e-53 179.3 0.0 1.1 1 0 0 1 1 1 1 Sir2 family DUF164 PF02591.10 gi|410669284|ref|YP_006921655.1| - 0.12 12.2 0.9 0.23 11.3 0.6 1.5 1 0 0 1 1 1 0 Putative zinc ribbon domain HSP20 PF00011.16 gi|410669285|ref|YP_006921656.1| - 0.0052 16.6 0.0 0.012 15.4 0.0 1.8 1 1 1 2 2 2 1 Hsp20/alpha crystallin family Orn_Arg_deC_N PF02784.11 gi|410669286|ref|YP_006921657.1| - 1e-32 113.3 0.0 1.3e-32 113.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|410669286|ref|YP_006921657.1| - 9.2e-17 60.8 0.0 1.4e-16 60.2 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RsgI_N PF12791.2 gi|410669286|ref|YP_006921657.1| - 0.049 13.2 0.1 2.5 7.8 0.0 3.1 4 0 0 4 4 4 0 Anti-sigma factor N-terminus Peptidase_S8 PF00082.17 gi|410669287|ref|YP_006921658.1| - 7.1e-61 205.8 15.9 7.1e-61 205.8 11.0 1.5 2 0 0 2 2 2 1 Subtilase family Inhibitor_I9 PF05922.11 gi|410669287|ref|YP_006921658.1| - 0.00018 21.9 0.0 0.0005 20.5 0.0 1.8 2 0 0 2 2 2 1 Peptidase inhibitor I9 Cna_B PF05738.8 gi|410669287|ref|YP_006921658.1| - 0.00026 20.6 1.7 0.00055 19.6 0.3 2.2 2 0 0 2 2 2 1 Cna protein B-type domain CarboxypepD_reg PF13620.1 gi|410669287|ref|YP_006921658.1| - 0.0014 18.6 2.8 0.0031 17.5 0.7 2.6 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|410669287|ref|YP_006921658.1| - 0.0021 17.9 4.0 0.0098 15.7 2.7 2.2 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) MG1 PF11974.3 gi|410669287|ref|YP_006921658.1| - 0.047 14.2 0.5 0.2 12.2 0.1 2.2 2 0 0 2 2 2 0 Alpha-2-macroglobulin MG1 domain UPF0047 PF01894.12 gi|410669288|ref|YP_006921659.1| - 2.1e-40 137.2 0.1 2.4e-40 137.0 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 HTH_24 PF13412.1 gi|410669289|ref|YP_006921660.1| - 1.8e-05 23.9 0.0 2.1e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding z-alpha PF02295.12 gi|410669289|ref|YP_006921660.1| - 0.00012 21.7 0.0 0.00015 21.4 0.0 1.1 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain MarR_2 PF12802.2 gi|410669289|ref|YP_006921660.1| - 0.0003 20.3 0.0 0.00032 20.3 0.0 1.1 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|410669289|ref|YP_006921660.1| - 0.00094 18.8 0.0 0.001 18.7 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|410669289|ref|YP_006921660.1| - 0.0019 18.5 0.0 0.0019 18.5 0.0 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|410669289|ref|YP_006921660.1| - 0.0035 17.0 0.0 0.0037 16.9 0.0 1.0 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|410669289|ref|YP_006921660.1| - 0.0087 15.7 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|410669289|ref|YP_006921660.1| - 0.018 14.8 0.0 0.032 14.0 0.0 1.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain DUF4423 PF14394.1 gi|410669289|ref|YP_006921660.1| - 0.02 14.4 0.0 0.021 14.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_IclR PF09339.5 gi|410669289|ref|YP_006921660.1| - 0.021 14.4 0.0 0.025 14.1 0.0 1.1 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|410669289|ref|YP_006921660.1| - 0.023 14.7 0.0 0.034 14.2 0.0 1.3 1 1 0 1 1 1 0 Transcriptional regulator TFIIE_alpha PF02002.12 gi|410669289|ref|YP_006921660.1| - 0.027 13.9 0.0 0.03 13.8 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit IF2_N PF04760.10 gi|410669289|ref|YP_006921660.1| - 0.042 13.5 0.1 0.12 12.0 0.0 1.7 1 1 1 2 2 2 0 Translation initiation factor IF-2, N-terminal region Sigma70_r3 PF04539.11 gi|410669289|ref|YP_006921660.1| - 0.042 13.7 0.0 0.84 9.5 0.0 2.0 2 0 0 2 2 2 0 Sigma-70 region 3 Retro_M PF02813.9 gi|410669289|ref|YP_006921660.1| - 0.068 13.3 0.0 0.53 10.4 0.0 1.8 1 1 1 2 2 2 0 Retroviral M domain Nup35_RRM_2 PF14605.1 gi|410669289|ref|YP_006921660.1| - 0.08 12.7 0.0 0.97 9.2 0.0 2.0 2 0 0 2 2 2 0 Nup53/35/40-type RNA recognition motif HTH_11 PF08279.7 gi|410669289|ref|YP_006921660.1| - 0.086 12.4 0.0 0.094 12.3 0.0 1.1 1 0 0 1 1 1 0 HTH domain RepL PF05732.6 gi|410669289|ref|YP_006921660.1| - 0.13 11.4 0.0 0.16 11.1 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HIT PF01230.18 gi|410669290|ref|YP_006921661.1| - 4.8e-29 100.7 0.0 7.3e-29 100.2 0.0 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|410669290|ref|YP_006921661.1| - 2.2e-17 63.3 0.0 2.8e-17 62.9 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|410669290|ref|YP_006921661.1| - 0.00069 19.2 0.3 0.0011 18.6 0.2 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DIPSY PF11763.3 gi|410669290|ref|YP_006921661.1| - 0.044 13.5 0.0 0.063 13.0 0.0 1.2 1 0 0 1 1 1 0 Cell-wall adhesin ligand-binding C-terminal GalP_UDP_tr_C PF02744.12 gi|410669290|ref|YP_006921661.1| - 0.11 11.9 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Galactose-1-phosphate uridyl transferase, C-terminal domain Arg_repressor_C PF02863.13 gi|410669291|ref|YP_006921662.1| - 0.02 14.3 0.7 0.048 13.1 0.5 1.7 1 0 0 1 1 1 0 Arginine repressor, C-terminal domain CTP_transf_1 PF01148.15 gi|410669292|ref|YP_006921663.1| - 5.7e-12 45.8 19.4 2.2e-10 40.6 6.9 2.4 1 1 1 2 2 2 2 Cytidylyltransferase family SseC PF04888.7 gi|410669292|ref|YP_006921663.1| - 0.82 8.9 3.5 1.3 8.3 2.4 1.2 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family AA_permease PF00324.16 gi|410669294|ref|YP_006921665.1| - 2.3e-47 161.4 62.0 3.9e-34 117.8 13.9 2.4 2 1 1 3 3 3 2 Amino acid permease FMN_red PF03358.10 gi|410669295|ref|YP_006921666.1| - 4.1e-26 91.3 0.0 4.8e-26 91.0 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|410669295|ref|YP_006921666.1| - 4.9e-14 52.2 0.0 5.8e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|410669295|ref|YP_006921666.1| - 0.056 13.4 0.0 0.099 12.6 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin domain Response_reg PF00072.19 gi|410669297|ref|YP_006921668.1| - 9.1e-40 135.1 1.0 2.6e-19 69.2 0.1 2.7 2 0 0 2 2 2 2 Response regulator receiver domain HATPase_c PF02518.21 gi|410669297|ref|YP_006921668.1| - 4e-28 97.3 0.0 1e-27 96.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|410669297|ref|YP_006921668.1| - 4.9e-20 71.3 1.0 1.2e-19 70.0 0.0 2.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain Hpt PF01627.18 gi|410669297|ref|YP_006921668.1| - 3.8e-08 33.2 4.3 2.4e-07 30.6 3.0 2.3 1 1 0 1 1 1 1 Hpt domain PAS_9 PF13426.1 gi|410669297|ref|YP_006921668.1| - 1.1e-07 32.1 0.0 7.8e-07 29.4 0.0 2.6 3 1 0 3 3 3 1 PAS domain PAS_4 PF08448.5 gi|410669297|ref|YP_006921668.1| - 1.4e-07 31.4 0.0 3.1e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_10 PF13596.1 gi|410669297|ref|YP_006921668.1| - 1.6e-05 25.1 0.1 0.00016 21.8 0.0 2.7 3 1 0 3 3 3 1 PAS domain PAS PF00989.19 gi|410669297|ref|YP_006921668.1| - 2.7e-05 23.9 0.1 0.0001 22.0 0.0 2.0 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|410669297|ref|YP_006921668.1| - 3e-05 23.7 0.0 9.3e-05 22.1 0.0 1.9 1 0 0 1 1 1 1 PAS domain HTH_29 PF13551.1 gi|410669298|ref|YP_006921669.1| - 7.1e-17 61.5 0.0 1.1e-16 60.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410669298|ref|YP_006921669.1| - 1e-10 42.2 0.3 2.2e-10 41.2 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|410669298|ref|YP_006921669.1| - 5.9e-09 35.3 0.4 1.2e-08 34.3 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|410669298|ref|YP_006921669.1| - 8.3e-07 28.4 0.1 3.1e-06 26.6 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|410669298|ref|YP_006921669.1| - 8.2e-06 25.7 0.0 2e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_21 PF13276.1 gi|410669298|ref|YP_006921669.1| - 0.031 14.2 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 HTH-like domain DDE_3 PF13358.1 gi|410669299|ref|YP_006921670.1| - 1.1e-23 83.5 0.1 1.3e-23 83.4 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|410669299|ref|YP_006921670.1| - 8.9e-10 38.7 0.0 1.1e-09 38.4 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|410669299|ref|YP_006921670.1| - 4e-08 32.6 0.0 4.1e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF3800 PF12686.2 gi|410669299|ref|YP_006921670.1| - 0.042 13.4 0.1 0.045 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3800) DDE_Tnp_ISAZ013 PF07592.6 gi|410669299|ref|YP_006921670.1| - 0.047 12.4 0.0 0.047 12.4 0.0 1.2 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain DDE_Tnp_1 PF01609.16 gi|410669300|ref|YP_006921671.1| - 1.1e-08 34.8 1.6 1.9e-08 34.1 1.1 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|410669300|ref|YP_006921671.1| - 0.076 12.9 0.1 0.17 11.8 0.1 1.5 1 0 0 1 1 1 0 Transposase domain (DUF772) DUF3307 PF11750.3 gi|410669301|ref|YP_006921672.1| - 6.5e-24 84.0 7.4 1.6e-23 82.8 5.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3307) DUF2244 PF10003.4 gi|410669301|ref|YP_006921672.1| - 1.7 8.0 14.6 0.053 12.8 4.7 2.3 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) HTH_38 PF13936.1 gi|410669302|ref|YP_006921673.1| - 0.0005 19.5 0.1 0.001 18.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|410669302|ref|YP_006921673.1| - 0.00077 18.7 0.0 0.0014 17.8 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|410669302|ref|YP_006921673.1| - 0.0014 18.0 0.1 0.0031 16.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|410669302|ref|YP_006921673.1| - 0.011 15.3 0.0 0.026 14.1 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_5 PF01022.15 gi|410669302|ref|YP_006921673.1| - 0.06 13.0 0.2 0.19 11.4 0.1 1.9 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_3 PF01381.17 gi|410669302|ref|YP_006921673.1| - 0.065 13.0 0.2 0.13 12.1 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix KorB PF08535.5 gi|410669302|ref|YP_006921673.1| - 0.074 13.2 0.1 0.24 11.5 0.0 1.8 2 0 0 2 2 2 0 KorB domain HTH_Tnp_ISL3 PF13542.1 gi|410669302|ref|YP_006921673.1| - 0.078 12.1 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Sigma70_ECF PF07638.6 gi|410669302|ref|YP_006921673.1| - 0.081 12.5 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor SfsA PF03749.8 gi|410669303|ref|YP_006921674.1| - 3.2e-63 213.0 0.0 4e-63 212.7 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein DUF258 PF03193.11 gi|410669305|ref|YP_006921676.1| - 8.9e-49 164.7 0.0 2.4e-48 163.3 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|410669305|ref|YP_006921676.1| - 1.2e-08 34.9 0.0 3.7e-08 33.3 0.0 1.9 2 0 0 2 2 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|410669305|ref|YP_006921676.1| - 3e-07 29.8 0.1 0.0066 15.7 0.0 2.5 2 0 0 2 2 2 2 Ferrous iron transport protein B ABC_tran PF00005.22 gi|410669305|ref|YP_006921676.1| - 5.3e-06 26.7 0.1 8.6e-06 26.0 0.0 1.6 1 1 0 1 1 1 1 ABC transporter PduV-EutP PF10662.4 gi|410669305|ref|YP_006921676.1| - 1.2e-05 24.8 0.1 0.052 13.0 0.1 2.8 2 1 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation Septin PF00735.13 gi|410669305|ref|YP_006921676.1| - 6.2e-05 22.1 0.0 0.00011 21.3 0.0 1.3 1 0 0 1 1 1 1 Septin AAA_29 PF13555.1 gi|410669305|ref|YP_006921676.1| - 0.00015 21.2 0.0 0.00029 20.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain GTP_EFTU PF00009.22 gi|410669305|ref|YP_006921676.1| - 0.00019 20.9 0.5 0.061 12.7 0.0 2.5 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain AAA_16 PF13191.1 gi|410669305|ref|YP_006921676.1| - 0.0004 20.4 0.0 0.00093 19.2 0.0 1.6 2 0 0 2 2 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|410669305|ref|YP_006921676.1| - 0.00053 19.5 0.0 0.0013 18.2 0.0 1.6 2 0 0 2 2 2 1 AAA-like domain Miro PF08477.8 gi|410669305|ref|YP_006921676.1| - 0.00076 19.9 0.0 0.0041 17.6 0.0 2.1 2 0 0 2 2 2 1 Miro-like protein cobW PF02492.14 gi|410669305|ref|YP_006921676.1| - 0.0021 17.5 0.0 1.3 8.3 0.0 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA_15 PF13175.1 gi|410669305|ref|YP_006921676.1| - 0.0061 15.6 0.3 0.02 13.9 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.1 gi|410669305|ref|YP_006921676.1| - 0.0062 16.5 0.4 0.047 13.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain Ras PF00071.17 gi|410669305|ref|YP_006921676.1| - 0.0094 15.3 0.1 0.68 9.2 0.0 2.4 2 0 0 2 2 2 1 Ras family Dynamin_N PF00350.18 gi|410669305|ref|YP_006921676.1| - 0.011 15.5 1.4 0.04 13.7 0.2 2.5 2 1 0 2 2 2 0 Dynamin family AAA_28 PF13521.1 gi|410669305|ref|YP_006921676.1| - 0.011 15.6 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|410669305|ref|YP_006921676.1| - 0.012 15.0 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|410669305|ref|YP_006921676.1| - 0.017 15.2 0.0 0.039 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|410669305|ref|YP_006921676.1| - 0.019 15.7 0.0 0.046 14.5 0.0 1.8 2 0 0 2 2 1 0 AAA domain MobB PF03205.9 gi|410669305|ref|YP_006921676.1| - 0.022 14.4 0.1 0.05 13.3 0.1 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|410669305|ref|YP_006921676.1| - 0.036 13.7 0.1 0.11 12.2 0.0 1.8 2 0 0 2 2 1 0 NTPase AAA PF00004.24 gi|410669305|ref|YP_006921676.1| - 0.038 14.1 0.0 0.091 12.9 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1_C PF08438.5 gi|410669305|ref|YP_006921676.1| - 0.039 14.1 0.1 0.22 11.7 0.0 2.1 2 0 0 2 2 2 0 GTPase of unknown function C-terminal ArgK PF03308.11 gi|410669305|ref|YP_006921676.1| - 0.041 12.6 0.3 0.18 10.5 0.0 2.0 1 1 1 2 2 2 0 ArgK protein Guanylate_kin PF00625.16 gi|410669305|ref|YP_006921676.1| - 0.043 13.2 0.0 0.081 12.3 0.0 1.4 1 0 0 1 1 1 0 Guanylate kinase AAA_33 PF13671.1 gi|410669305|ref|YP_006921676.1| - 0.06 13.2 0.0 0.15 11.9 0.0 1.8 2 0 0 2 2 1 0 AAA domain Sigma54_activat PF00158.21 gi|410669305|ref|YP_006921676.1| - 0.073 12.5 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_14 PF13173.1 gi|410669305|ref|YP_006921676.1| - 0.09 12.6 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.8 gi|410669305|ref|YP_006921676.1| - 0.097 11.5 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AIG1 PF04548.11 gi|410669305|ref|YP_006921676.1| - 0.1 11.7 0.0 0.21 10.6 0.0 1.5 1 0 0 1 1 1 0 AIG1 family AAA_18 PF13238.1 gi|410669305|ref|YP_006921676.1| - 0.11 12.8 0.3 0.22 11.8 0.0 1.7 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.17 gi|410669305|ref|YP_006921676.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 RNA helicase FKBP_C PF00254.23 gi|410669306|ref|YP_006921677.1| - 2.3e-11 43.5 0.2 1.5e-10 40.9 0.0 2.2 1 1 1 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase Kinesin-relat_1 PF12711.2 gi|410669307|ref|YP_006921678.1| - 0.038 14.3 1.9 0.061 13.7 1.1 1.5 1 1 0 1 1 1 0 Kinesin motor Snf7 PF03357.16 gi|410669307|ref|YP_006921678.1| - 0.049 13.0 0.0 0.067 12.5 0.0 1.1 1 0 0 1 1 1 0 Snf7 DAO PF01266.19 gi|410669309|ref|YP_006921680.1| - 9.7e-12 44.4 7.5 2.6e-07 29.8 0.2 2.7 2 1 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|410669309|ref|YP_006921680.1| - 1.1e-09 37.6 0.0 1.8e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|410669309|ref|YP_006921680.1| - 1.1e-08 34.6 0.1 1.9e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|410669309|ref|YP_006921680.1| - 3.3e-08 32.9 4.6 2.5e-05 23.5 0.0 3.1 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.1 gi|410669309|ref|YP_006921680.1| - 4.1e-08 33.1 0.1 6.9e-07 29.1 0.0 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|410669309|ref|YP_006921680.1| - 6.6e-08 32.6 0.2 1.7e-07 31.3 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|410669309|ref|YP_006921680.1| - 7.9e-08 31.1 0.3 1.4e-07 30.3 0.2 1.4 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.12 gi|410669309|ref|YP_006921680.1| - 7.4e-07 28.4 0.0 1.7e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.7 gi|410669309|ref|YP_006921680.1| - 2.3e-06 26.8 0.0 4.3e-05 22.6 0.0 2.4 2 1 0 2 2 2 1 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|410669309|ref|YP_006921680.1| - 2.4e-06 26.6 0.6 2.4e-06 26.6 0.4 1.8 2 0 0 2 2 2 1 FAD binding domain Trp_halogenase PF04820.9 gi|410669309|ref|YP_006921680.1| - 0.00025 19.8 0.3 0.0078 14.8 0.0 2.4 2 1 0 2 2 2 1 Tryptophan halogenase Pyr_redox_3 PF13738.1 gi|410669309|ref|YP_006921680.1| - 0.00028 21.0 0.1 0.00072 19.6 0.1 1.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|410669309|ref|YP_006921680.1| - 0.0033 17.7 0.3 0.17 12.2 0.0 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|410669309|ref|YP_006921680.1| - 0.0036 16.9 0.1 0.0093 15.6 0.1 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AIG2 PF06094.7 gi|410669310|ref|YP_006921681.1| - 8.4e-17 61.5 0.0 1e-16 61.2 0.0 1.1 1 0 0 1 1 1 1 AIG2-like family Radical_SAM PF04055.16 gi|410669311|ref|YP_006921682.1| - 9.2e-17 61.7 0.3 1.3e-16 61.2 0.2 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|410669311|ref|YP_006921682.1| - 1.7e-07 31.2 0.1 3e-07 30.4 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|410669311|ref|YP_006921682.1| - 0.00018 21.6 0.2 0.00025 21.1 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF1918 PF08940.6 gi|410669311|ref|YP_006921682.1| - 0.071 12.4 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1918) MMR_HSR1 PF01926.18 gi|410669312|ref|YP_006921683.1| - 6e-16 58.4 0.1 1e-15 57.6 0.1 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|410669312|ref|YP_006921683.1| - 4.8e-13 48.6 1.5 9.1e-12 44.5 1.0 2.1 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|410669312|ref|YP_006921683.1| - 6.4e-06 25.7 0.3 0.00017 21.1 0.1 2.3 1 1 0 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|410669312|ref|YP_006921683.1| - 0.00032 20.5 0.1 0.00066 19.5 0.1 1.6 1 1 0 1 1 1 1 Dynamin family MobB PF03205.9 gi|410669312|ref|YP_006921683.1| - 0.00073 19.2 0.8 0.0014 18.3 0.0 1.8 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B Septin PF00735.13 gi|410669312|ref|YP_006921683.1| - 0.0033 16.4 0.1 0.011 14.7 0.0 1.8 1 1 1 2 2 2 1 Septin DUF258 PF03193.11 gi|410669312|ref|YP_006921683.1| - 0.0041 16.3 0.2 0.013 14.7 0.2 1.8 1 1 0 1 1 1 1 Protein of unknown function, DUF258 PduV-EutP PF10662.4 gi|410669312|ref|YP_006921683.1| - 0.0052 16.2 0.1 0.093 12.2 0.0 2.1 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.5 gi|410669312|ref|YP_006921683.1| - 0.027 13.6 0.1 0.068 12.3 0.1 1.6 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit DUF4065 PF13274.1 gi|410669312|ref|YP_006921683.1| - 0.055 14.1 0.0 0.1 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4065) Arch_ATPase PF01637.13 gi|410669312|ref|YP_006921683.1| - 0.06 13.0 0.2 0.079 12.6 0.2 1.5 1 1 0 1 1 1 0 Archaeal ATPase Miro PF08477.8 gi|410669312|ref|YP_006921683.1| - 0.082 13.4 0.3 0.15 12.5 0.2 1.7 1 1 0 1 1 1 0 Miro-like protein Gtr1_RagA PF04670.7 gi|410669312|ref|YP_006921683.1| - 0.12 11.4 1.3 0.46 9.5 0.9 1.8 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region AIG1 PF04548.11 gi|410669312|ref|YP_006921683.1| - 0.35 9.9 3.0 4.6 6.3 2.1 2.1 1 1 0 1 1 1 0 AIG1 family DHHA1 PF02272.14 gi|410669313|ref|YP_006921684.1| - 1.2e-09 37.7 0.3 2.4e-09 36.7 0.2 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|410669313|ref|YP_006921684.1| - 1.1e-05 25.1 0.1 2.7e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 DHH family HTH_WhiA PF02650.9 gi|410669313|ref|YP_006921684.1| - 0.0078 16.5 0.0 0.02 15.2 0.0 1.7 1 0 0 1 1 1 1 WhiA C-terminal HTH domain TRAP_beta PF05753.9 gi|410669314|ref|YP_006921685.1| - 5.1e-07 29.0 0.3 0.00012 21.3 0.1 2.3 1 1 1 2 2 2 2 Translocon-associated protein beta (TRAPB) DUF11 PF01345.13 gi|410669314|ref|YP_006921685.1| - 0.0013 18.7 0.0 0.004 17.1 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function DUF11 DUF11 PF01345.13 gi|410669315|ref|YP_006921686.1| - 1.2e-14 54.1 7.4 9.9e-10 38.3 2.8 4.1 4 0 0 4 4 4 3 Domain of unknown function DUF11 CARDB PF07705.6 gi|410669315|ref|YP_006921686.1| - 3.4e-11 43.0 9.7 2.3e-05 24.3 0.7 3.9 3 0 0 3 3 3 3 CARDB TRAP_beta PF05753.9 gi|410669315|ref|YP_006921686.1| - 4.3e-10 39.0 13.3 1.2e-06 27.8 0.9 3.4 1 1 1 3 3 3 2 Translocon-associated protein beta (TRAPB) A2M PF00207.17 gi|410669315|ref|YP_006921686.1| - 0.021 14.4 0.1 0.062 12.8 0.0 1.9 1 0 0 1 1 1 0 Alpha-2-macroglobulin family DUF4117 PF13491.1 gi|410669315|ref|YP_006921686.1| - 0.038 13.4 0.0 0.071 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4117) A2M_N_2 PF07703.9 gi|410669315|ref|YP_006921686.1| - 0.93 9.2 8.5 1.6e+02 2.0 4.8 3.5 2 2 0 2 2 2 0 Alpha-2-macroglobulin family N-terminal region DUF2393 PF09624.5 gi|410669315|ref|YP_006921686.1| - 2 7.9 8.5 1.1 8.7 0.6 3.5 2 1 0 3 3 3 0 Protein of unknown function (DUF2393) KaiC PF06745.8 gi|410669317|ref|YP_006921688.1| - 1.2e-48 165.2 0.0 1.9e-48 164.5 0.0 1.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|410669317|ref|YP_006921688.1| - 2.9e-10 39.8 0.0 1.5e-09 37.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|410669317|ref|YP_006921688.1| - 9.7e-05 22.5 0.0 0.0003 20.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|410669317|ref|YP_006921688.1| - 0.00029 20.5 0.0 0.00052 19.7 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|410669317|ref|YP_006921688.1| - 0.00043 20.1 0.0 0.0023 17.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|410669317|ref|YP_006921688.1| - 0.00081 20.2 0.0 0.0045 17.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|410669317|ref|YP_006921688.1| - 0.0027 17.6 0.0 0.0067 16.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|410669317|ref|YP_006921688.1| - 0.0031 16.4 0.0 0.026 13.4 0.0 2.0 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA PF00004.24 gi|410669317|ref|YP_006921688.1| - 0.0051 17.0 0.0 0.027 14.6 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) GvpD PF07088.6 gi|410669317|ref|YP_006921688.1| - 0.0072 14.6 0.0 0.021 13.1 0.0 1.8 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.16 gi|410669317|ref|YP_006921688.1| - 0.011 14.8 0.0 0.044 12.8 0.0 1.9 2 0 0 2 2 2 0 recA bacterial DNA recombination protein AAA_18 PF13238.1 gi|410669317|ref|YP_006921688.1| - 0.014 15.6 0.1 0.03 14.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain Rad51 PF08423.6 gi|410669317|ref|YP_006921688.1| - 0.016 14.1 0.1 0.18 10.7 0.0 2.0 2 0 0 2 2 2 0 Rad51 T2SE PF00437.15 gi|410669317|ref|YP_006921688.1| - 0.018 13.9 0.0 0.03 13.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_11 PF13086.1 gi|410669317|ref|YP_006921688.1| - 0.022 14.3 0.0 0.031 13.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain DUF2608 PF11019.3 gi|410669317|ref|YP_006921688.1| - 0.025 13.5 0.0 0.27 10.1 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2608) Arch_ATPase PF01637.13 gi|410669317|ref|YP_006921688.1| - 0.028 14.1 0.0 0.054 13.1 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase AAA_29 PF13555.1 gi|410669317|ref|YP_006921688.1| - 0.045 13.2 0.0 0.085 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|410669317|ref|YP_006921688.1| - 0.052 13.2 0.1 0.17 11.5 0.0 1.9 3 0 0 3 3 3 0 NACHT domain cobW PF02492.14 gi|410669317|ref|YP_006921688.1| - 0.056 12.8 0.0 0.094 12.1 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain UPF0079 PF02367.12 gi|410669317|ref|YP_006921688.1| - 0.07 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|410669317|ref|YP_006921688.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Zot PF05707.7 gi|410669317|ref|YP_006921688.1| - 0.12 11.8 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Zeta_toxin PF06414.7 gi|410669317|ref|YP_006921688.1| - 0.13 11.3 0.2 0.28 10.2 0.1 1.5 2 0 0 2 2 2 0 Zeta toxin DAP3 PF10236.4 gi|410669317|ref|YP_006921688.1| - 0.14 11.0 0.0 0.21 10.4 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 ATP_bind_1 PF03029.12 gi|410669317|ref|YP_006921688.1| - 0.15 11.5 0.7 0.28 10.6 0.1 1.7 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein NIF3 PF01784.13 gi|410669318|ref|YP_006921689.1| - 2e-55 188.0 0.1 2.4e-55 187.7 0.1 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Pox_VERT_large PF04441.8 gi|410669318|ref|YP_006921689.1| - 0.0082 14.3 0.1 0.0097 14.1 0.1 1.0 1 0 0 1 1 1 1 Poxvirus early transcription factor (VETF), large subunit Trm56 PF01994.11 gi|410669320|ref|YP_006921691.1| - 9.8e-51 170.5 0.1 1.2e-50 170.2 0.1 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Glycos_trans_3N PF02885.12 gi|410669321|ref|YP_006921692.1| - 2.2e-13 49.6 0.0 4.8e-13 48.4 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PYNP_C PF07831.8 gi|410669321|ref|YP_006921692.1| - 5e-13 48.3 0.3 2.8e-12 45.9 0.0 2.4 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.16 gi|410669321|ref|YP_006921692.1| - 2.1e-11 43.7 0.9 5e-08 32.6 0.2 3.1 3 0 0 3 3 3 2 Glycosyl transferase family, a/b domain Molydop_binding PF01568.16 gi|410669321|ref|YP_006921692.1| - 1.7e-06 27.8 0.2 3.3e-06 26.8 0.1 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|410669321|ref|YP_006921692.1| - 0.0002 21.2 0.1 0.00047 20.0 0.1 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Biotin_lipoyl PF00364.17 gi|410669321|ref|YP_006921692.1| - 0.00077 19.0 0.0 0.01 15.4 0.0 2.9 2 0 0 2 2 2 1 Biotin-requiring enzyme Peptidase_C26 PF07722.8 gi|410669321|ref|YP_006921692.1| - 0.053 12.9 0.1 0.087 12.2 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 DUF2254 PF10011.4 gi|410669321|ref|YP_006921692.1| - 0.15 10.4 0.0 0.23 9.8 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) dCMP_cyt_deam_1 PF00383.17 gi|410669322|ref|YP_006921693.1| - 2.8e-24 84.7 0.0 3.5e-24 84.3 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.1 gi|410669322|ref|YP_006921693.1| - 0.00097 18.7 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 MafB19-like deaminase DUF2162 PF09930.4 gi|410669322|ref|YP_006921693.1| - 0.21 10.6 0.5 0.29 10.2 0.3 1.2 1 0 0 1 1 1 0 Predicted transporter (DUF2162) PDT PF00800.13 gi|410669323|ref|YP_006921694.1| - 1.8e-56 190.5 0.0 3.4e-56 189.6 0.0 1.4 1 1 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|410669323|ref|YP_006921694.1| - 4.1e-10 38.9 0.0 1.4e-09 37.2 0.0 1.9 2 0 0 2 2 2 1 ACT domain PEP-utilizers PF00391.18 gi|410669323|ref|YP_006921694.1| - 0.1 12.2 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 PEP-utilising enzyme, mobile domain CM2 PF03021.9 gi|410669324|ref|YP_006921695.1| - 0.095 12.2 0.4 1.4 8.4 0.1 2.3 2 0 0 2 2 2 0 Influenza C virus M2 protein DUF4231 PF14015.1 gi|410669324|ref|YP_006921695.1| - 0.11 12.5 1.5 0.28 11.1 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) DUF4064 PF13273.1 gi|410669324|ref|YP_006921695.1| - 2.3 8.4 10.2 4 7.6 0.2 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF4064) AAA_3 PF07726.6 gi|410669325|ref|YP_006921696.1| - 5e-61 204.0 0.0 8.2e-61 203.3 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|410669325|ref|YP_006921696.1| - 2.5e-12 46.6 0.0 8.3e-12 45.0 0.0 1.9 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|410669325|ref|YP_006921696.1| - 1.1e-05 25.6 0.1 3.8e-05 23.9 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|410669325|ref|YP_006921696.1| - 5.1e-05 22.2 0.0 0.0001 21.2 0.0 1.6 1 1 0 1 1 1 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|410669325|ref|YP_006921696.1| - 0.00057 19.4 0.1 0.0019 17.6 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|410669325|ref|YP_006921696.1| - 0.0026 16.8 0.3 0.52 9.3 0.0 2.4 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus DUF58 PF01882.13 gi|410669326|ref|YP_006921697.1| - 4.6e-22 77.9 0.1 1.6e-21 76.2 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|410669326|ref|YP_006921697.1| - 4.3e-06 26.9 0.2 6.2e-06 26.4 0.1 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|410669326|ref|YP_006921697.1| - 0.0032 16.6 0.1 0.0057 15.8 0.1 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.23 gi|410669326|ref|YP_006921697.1| - 0.034 13.8 0.2 0.08 12.6 0.1 1.6 1 1 0 1 1 1 0 von Willebrand factor type A domain BatA PF07584.6 gi|410669327|ref|YP_006921698.1| - 4.7e-14 52.3 11.2 9.8e-14 51.3 7.8 1.6 1 0 0 1 1 1 1 Aerotolerance regulator N-terminal Glyco_hydro_42M PF08532.5 gi|410669327|ref|YP_006921698.1| - 0.00017 20.8 0.3 0.0007 18.8 0.2 2.0 1 1 0 1 1 1 1 Beta-galactosidase trimerisation domain VWA_2 PF13519.1 gi|410669327|ref|YP_006921698.1| - 0.0085 16.2 5.7 0.03 14.4 3.9 2.1 1 1 0 1 1 1 1 von Willebrand factor type A domain ABC_transp_aux PF09822.4 gi|410669327|ref|YP_006921698.1| - 0.018 14.5 0.0 0.047 13.1 0.0 1.8 1 1 0 1 1 1 0 ABC-type uncharacterized transport system ThuA PF06283.6 gi|410669327|ref|YP_006921698.1| - 0.023 14.3 0.0 0.055 13.1 0.0 1.6 1 1 0 1 1 1 0 Trehalose utilisation DUF1726 PF08351.6 gi|410669327|ref|YP_006921698.1| - 0.11 12.1 0.0 0.31 10.7 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1726) VWA_2 PF13519.1 gi|410669328|ref|YP_006921699.1| - 1.3e-20 74.2 8.5 1.6e-15 57.6 0.1 3.9 2 1 2 4 4 4 3 von Willebrand factor type A domain DUF1355 PF07090.6 gi|410669328|ref|YP_006921699.1| - 1.3e-07 31.1 0.1 4.3e-07 29.4 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1355) VWA PF00092.23 gi|410669328|ref|YP_006921699.1| - 0.00039 20.1 4.5 0.24 11.0 0.2 2.7 2 1 0 2 2 2 2 von Willebrand factor type A domain BatA PF07584.6 gi|410669328|ref|YP_006921699.1| - 5.2 7.3 11.2 5 7.3 1.1 2.9 2 1 1 3 3 3 0 Aerotolerance regulator N-terminal Cys_Met_Meta_PP PF01053.15 gi|410669330|ref|YP_006921701.1| - 5.9e-143 475.8 0.0 6.7e-143 475.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|410669330|ref|YP_006921701.1| - 2.6e-15 56.3 0.0 8.9e-14 51.3 0.0 2.1 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|410669330|ref|YP_006921701.1| - 5.6e-08 31.9 0.0 8.3e-08 31.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|410669330|ref|YP_006921701.1| - 8.9e-07 28.1 0.0 1.3e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|410669330|ref|YP_006921701.1| - 8.1e-05 21.8 0.0 0.00021 20.5 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase GDC-P PF02347.11 gi|410669330|ref|YP_006921701.1| - 0.0055 15.4 0.0 0.0079 14.9 0.0 1.1 1 0 0 1 1 1 1 Glycine cleavage system P-protein Met_gamma_lyase PF06838.6 gi|410669330|ref|YP_006921701.1| - 0.0055 15.0 2.4 0.09 11.0 1.6 2.0 1 1 0 1 1 1 1 Methionine gamma-lyase SLA_LP_auto_ag PF05889.8 gi|410669330|ref|YP_006921701.1| - 0.037 12.4 0.0 0.053 11.9 0.0 1.1 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) CBS PF00571.23 gi|410669331|ref|YP_006921702.1| - 4.7e-28 96.7 0.6 4.1e-13 48.8 0.0 2.6 2 0 0 2 2 2 2 CBS domain Abhydrolase_1 PF00561.15 gi|410669331|ref|YP_006921702.1| - 3.7e-21 75.7 0.1 8.1e-21 74.6 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|410669331|ref|YP_006921702.1| - 7.1e-11 42.4 0.0 9.6e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|410669331|ref|YP_006921702.1| - 0.0055 16.4 0.0 0.079 12.7 0.0 2.5 2 1 0 2 2 2 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|410669331|ref|YP_006921702.1| - 0.049 13.0 0.1 0.079 12.3 0.1 1.3 1 0 0 1 1 1 0 Putative esterase Peptidase_S9 PF00326.16 gi|410669331|ref|YP_006921702.1| - 0.098 11.8 0.1 3.1 6.9 0.0 2.2 2 0 0 2 2 2 0 Prolyl oligopeptidase family TrmB PF01978.14 gi|410669332|ref|YP_006921703.1| - 0.00014 21.4 0.0 0.00019 21.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|410669332|ref|YP_006921703.1| - 0.00053 19.6 0.0 0.00076 19.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|410669332|ref|YP_006921703.1| - 0.00071 18.9 0.1 0.0012 18.2 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|410669332|ref|YP_006921703.1| - 0.00099 18.7 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.1 gi|410669332|ref|YP_006921703.1| - 0.0014 18.6 0.0 0.0029 17.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|410669332|ref|YP_006921703.1| - 0.0017 18.1 0.0 0.0037 17.0 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|410669332|ref|YP_006921703.1| - 0.0021 17.6 0.0 0.0036 16.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|410669332|ref|YP_006921703.1| - 0.0059 16.5 0.0 0.0092 15.9 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TFIIE_alpha PF02002.12 gi|410669332|ref|YP_006921703.1| - 0.012 15.1 0.1 0.016 14.7 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit RepL PF05732.6 gi|410669332|ref|YP_006921703.1| - 0.019 14.1 0.0 0.02 14.0 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_23 PF13384.1 gi|410669332|ref|YP_006921703.1| - 0.024 14.2 0.0 0.065 12.9 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_IclR PF09339.5 gi|410669332|ref|YP_006921703.1| - 0.028 13.9 0.0 0.042 13.4 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|410669332|ref|YP_006921703.1| - 0.04 13.9 0.1 0.16 12.0 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_rep_O PF04492.8 gi|410669332|ref|YP_006921703.1| - 0.075 13.2 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage replication protein O HTH_29 PF13551.1 gi|410669332|ref|YP_006921703.1| - 0.077 13.1 0.1 0.26 11.4 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix GntR PF00392.16 gi|410669332|ref|YP_006921703.1| - 0.099 12.0 0.2 0.2 11.0 0.0 1.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family tRNA_int_endo PF01974.12 gi|410669332|ref|YP_006921703.1| - 0.1 12.4 0.1 0.42 10.4 0.0 1.8 2 0 0 2 2 2 0 tRNA intron endonuclease, catalytic C-terminal domain Sigma54_DBD PF04552.8 gi|410669332|ref|YP_006921703.1| - 0.11 12.0 0.1 0.21 11.1 0.0 1.4 1 1 0 1 1 1 0 Sigma-54, DNA binding domain HTH_Mga PF08280.6 gi|410669332|ref|YP_006921703.1| - 0.12 12.1 0.1 0.28 10.9 0.0 1.7 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain Fer4_5 PF12801.2 gi|410669333|ref|YP_006921704.1| - 2e-11 43.5 11.7 4.3e-10 39.2 1.6 3.7 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|410669333|ref|YP_006921704.1| - 3.9e-08 33.4 15.9 6.4e-05 23.1 11.7 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410669333|ref|YP_006921704.1| - 2.7e-07 30.8 15.5 0.00033 20.9 2.3 3.1 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|410669333|ref|YP_006921704.1| - 2.8e-07 29.8 23.7 2.3e-05 23.7 3.4 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|410669333|ref|YP_006921704.1| - 4.2e-07 29.6 28.8 1.1e-05 25.1 11.8 2.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410669333|ref|YP_006921704.1| - 9.7e-07 28.5 14.6 0.002 17.9 2.2 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410669333|ref|YP_006921704.1| - 9.8e-07 28.3 18.2 5.5e-05 22.8 2.7 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|410669333|ref|YP_006921704.1| - 8.8e-06 26.0 22.3 0.00082 19.7 2.8 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410669333|ref|YP_006921704.1| - 3.2e-05 23.5 20.4 0.00022 20.9 2.2 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|410669333|ref|YP_006921704.1| - 0.00011 22.1 17.9 0.059 13.4 3.9 2.9 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410669333|ref|YP_006921704.1| - 0.00012 22.7 15.3 0.0024 18.5 2.0 2.9 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|410669333|ref|YP_006921704.1| - 0.0003 21.0 18.6 0.058 13.7 4.6 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|410669333|ref|YP_006921704.1| - 0.0035 17.7 6.2 0.0035 17.7 4.3 4.0 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|410669333|ref|YP_006921704.1| - 0.022 15.0 4.1 0.022 15.0 2.9 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|410669333|ref|YP_006921704.1| - 0.53 10.7 19.6 0.42 11.0 2.9 2.6 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|410669333|ref|YP_006921704.1| - 9.3 6.9 14.8 8.7 6.9 2.1 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain DUF342 PF03961.8 gi|410669335|ref|YP_006921706.1| - 0.0052 15.2 13.5 0.021 13.2 9.4 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF342) DUF1345 PF07077.6 gi|410669335|ref|YP_006921706.1| - 0.023 14.2 2.8 0.055 12.9 2.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1345) Hexapep PF00132.19 gi|410669335|ref|YP_006921706.1| - 1.9 8.1 7.7 7.1 6.3 3.0 3.3 3 0 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) GPI2 PF06432.6 gi|410669335|ref|YP_006921706.1| - 7.7 5.7 8.5 14 4.9 5.9 1.5 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase Polyketide_cyc2 PF10604.4 gi|410669336|ref|YP_006921707.1| - 6.5e-12 45.7 0.0 7.6e-12 45.5 0.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|410669336|ref|YP_006921707.1| - 2.9e-05 24.1 0.0 3e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc PF03364.15 gi|410669336|ref|YP_006921707.1| - 0.0032 17.4 0.0 0.004 17.1 0.0 1.5 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Citrate_synt PF00285.16 gi|410669337|ref|YP_006921708.1| - 2.3e-119 398.3 0.0 2.5e-119 398.1 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase Aconitase PF00330.15 gi|410669338|ref|YP_006921709.1| - 1.1e-136 456.0 0.0 5.9e-94 315.1 0.0 2.1 2 0 0 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|410669338|ref|YP_006921709.1| - 2.1e-41 141.0 0.0 4.8e-41 139.9 0.0 1.6 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF4096 PF13340.1 gi|410669341|ref|YP_006921712.1| - 1.3e-28 98.6 0.5 1.7e-28 98.3 0.3 1.1 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1_2 PF13586.1 gi|410669342|ref|YP_006921713.1| - 2e-34 117.6 7.5 1.1e-21 76.8 0.3 2.9 3 0 0 3 3 3 2 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|410669342|ref|YP_006921713.1| - 6e-18 65.1 8.4 3.1e-09 36.6 0.4 2.4 1 1 1 2 2 2 2 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|410669342|ref|YP_006921713.1| - 3.3e-05 23.5 0.3 0.054 13.0 0.0 2.1 1 1 1 2 2 2 2 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.1 gi|410669342|ref|YP_006921713.1| - 0.0071 16.3 1.8 0.51 10.3 0.2 2.3 2 0 0 2 2 2 2 Transposase DDE domain DUF202 PF02656.10 gi|410669342|ref|YP_006921713.1| - 0.14 12.3 0.3 0.51 10.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF202) Glyco_hydro_77 PF02446.12 gi|410669343|ref|YP_006921714.1| - 0.049 12.2 0.3 0.053 12.0 0.2 1.0 1 0 0 1 1 1 0 4-alpha-glucanotransferase RAP PF08373.5 gi|410669343|ref|YP_006921714.1| - 0.058 13.1 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 RAP domain Plasmid_parti PF01672.11 gi|410669343|ref|YP_006921714.1| - 0.1 13.0 1.1 0.4 11.1 0.3 2.0 2 0 0 2 2 2 0 Putative plasmid partition protein UNC-50 PF05216.8 gi|410669344|ref|YP_006921715.1| - 0.0074 15.5 0.2 0.0083 15.3 0.1 1.1 1 0 0 1 1 1 1 UNC-50 family Potyvirid-P3 PF13608.1 gi|410669345|ref|YP_006921716.1| - 0.0049 16.0 0.1 0.0092 15.1 0.1 1.4 1 0 0 1 1 1 1 Protein P3 of Potyviral polyprotein Ion_trans_N PF08412.5 gi|410669345|ref|YP_006921716.1| - 0.083 12.2 0.4 3.2 7.1 0.0 2.8 3 0 0 3 3 3 0 Ion transport protein N-terminal RWD PF05773.17 gi|410669346|ref|YP_006921717.1| - 0.0067 16.3 0.9 0.014 15.2 0.6 1.6 1 1 0 1 1 1 1 RWD domain Phage_integrase PF00589.17 gi|410669347|ref|YP_006921718.1| - 4.5e-11 42.7 0.5 5.4e-10 39.2 0.3 2.3 1 1 0 1 1 1 1 Phage integrase family DUF904 PF06005.7 gi|410669347|ref|YP_006921718.1| - 0.66 10.3 5.2 1.8 8.9 3.6 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF904) bZIP_1 PF00170.16 gi|410669347|ref|YP_006921718.1| - 1.6 8.7 7.0 2.1 8.3 0.5 2.7 1 1 1 2 2 2 0 bZIP transcription factor Arch_ATPase PF01637.13 gi|410669348|ref|YP_006921719.1| - 9.7e-17 61.4 2.6 2.2e-16 60.2 1.8 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|410669348|ref|YP_006921719.1| - 5.1e-11 42.5 0.9 0.00014 21.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|410669348|ref|YP_006921719.1| - 4.3e-08 33.3 0.0 7.9e-08 32.4 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|410669348|ref|YP_006921719.1| - 8.8e-06 25.8 0.0 3.2e-05 24.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_35 PF14516.1 gi|410669348|ref|YP_006921719.1| - 1.3e-05 23.9 0.1 0.0064 15.1 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA PF00004.24 gi|410669348|ref|YP_006921719.1| - 0.002 18.3 0.3 0.025 14.7 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) HTH_20 PF12840.2 gi|410669349|ref|YP_006921720.1| - 0.019 14.7 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|410669349|ref|YP_006921720.1| - 0.044 13.4 0.0 0.058 13.0 0.0 1.2 1 0 0 1 1 1 0 MarR family AAA_5 PF07728.9 gi|410669350|ref|YP_006921721.1| - 2.1e-15 56.6 0.1 3.5e-11 42.9 0.0 3.1 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|410669350|ref|YP_006921721.1| - 4.6e-06 26.8 0.0 0.072 13.2 0.0 3.0 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|410669350|ref|YP_006921721.1| - 0.00027 20.3 0.0 0.00057 19.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|410669350|ref|YP_006921721.1| - 0.00045 19.6 0.0 0.0017 17.8 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|410669350|ref|YP_006921721.1| - 0.0061 16.7 0.0 1.6 8.8 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|410669350|ref|YP_006921721.1| - 0.03 14.2 0.0 0.47 10.4 0.0 2.5 2 1 1 3 3 3 0 AAA ATPase domain AAA_19 PF13245.1 gi|410669350|ref|YP_006921721.1| - 0.034 13.9 0.0 0.086 12.6 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain PhoH PF02562.11 gi|410669350|ref|YP_006921721.1| - 0.15 11.2 0.0 0.41 9.8 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein McrBC PF10117.4 gi|410669351|ref|YP_006921722.1| - 1.3e-82 277.3 0.5 1.6e-82 277.0 0.4 1.1 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component Phe_ZIP PF08916.6 gi|410669352|ref|YP_006921723.1| - 0.013 15.8 0.3 0.043 14.1 0.2 1.8 1 0 0 1 1 1 0 Phenylalanine zipper PCI PF01399.22 gi|410669353|ref|YP_006921724.1| - 0.0091 16.3 0.2 0.82 10.0 0.0 2.5 2 0 0 2 2 2 1 PCI domain Stn1_C PF12659.2 gi|410669353|ref|YP_006921724.1| - 0.027 14.3 0.4 2.6 7.8 0.0 2.3 2 0 0 2 2 2 0 Telomere capping C-terminal wHTH Sigma70_r1_1 PF03979.9 gi|410669353|ref|YP_006921724.1| - 0.086 12.7 1.2 4.8 7.1 0.0 2.3 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 DUF1788 PF08747.6 gi|410669356|ref|YP_006921727.1| - 1e-42 144.9 0.0 1.5e-42 144.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) Methyltransf_26 PF13659.1 gi|410669358|ref|YP_006921729.1| - 6.8e-18 64.7 0.0 1.8e-17 63.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|410669358|ref|YP_006921729.1| - 4.4e-13 48.9 0.0 1.5e-06 27.5 0.0 2.4 2 0 0 2 2 2 2 N-6 DNA Methylase Eco57I PF07669.6 gi|410669358|ref|YP_006921729.1| - 3.5e-09 36.9 0.0 1.6e-08 34.8 0.0 2.1 2 0 0 2 2 2 1 Eco57I restriction-modification methylase UPF0020 PF01170.13 gi|410669358|ref|YP_006921729.1| - 0.0067 16.0 0.0 2 7.9 0.0 2.8 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 HATPase_c_4 PF13749.1 gi|410669359|ref|YP_006921730.1| - 5.1e-25 87.0 0.0 9.6e-25 86.2 0.0 1.4 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal AAA_4 PF04326.9 gi|410669359|ref|YP_006921730.1| - 4.1e-24 85.0 0.0 9.9e-24 83.8 0.0 1.7 2 0 0 2 2 2 1 Divergent AAA domain HTH_34 PF13601.1 gi|410669359|ref|YP_006921730.1| - 0.00019 21.3 0.2 0.00067 19.6 0.1 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|410669359|ref|YP_006921730.1| - 0.0056 16.9 0.0 0.026 14.8 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HATPase_c_2 PF13581.1 gi|410669359|ref|YP_006921730.1| - 0.048 13.4 0.0 0.086 12.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF4200 PF13863.1 gi|410669360|ref|YP_006921731.1| - 0.077 12.9 3.0 0.42 10.5 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) DUF365 PF04033.7 gi|410669361|ref|YP_006921732.1| - 4.4e-07 29.7 1.8 4.8e-07 29.6 0.3 1.7 2 1 0 2 2 2 1 Domain of unknown function (DUF365) EVE PF01878.13 gi|410669361|ref|YP_006921732.1| - 0.013 15.4 0.3 0.02 14.8 0.2 1.4 1 1 0 1 1 1 0 EVE domain HD PF01966.17 gi|410669362|ref|YP_006921733.1| - 2.9e-16 59.5 0.3 1.1e-15 57.6 0.0 2.1 2 0 0 2 2 2 1 HD domain HD_assoc PF13286.1 gi|410669362|ref|YP_006921733.1| - 5e-13 49.1 0.2 6.3e-05 23.1 0.0 3.3 3 0 0 3 3 3 2 Phosphohydrolase-associated domain Aldo_ket_red PF00248.16 gi|410669362|ref|YP_006921733.1| - 0.042 12.6 0.0 0.13 11.0 0.0 1.7 2 0 0 2 2 2 0 Aldo/keto reductase family UL11 PF11094.3 gi|410669362|ref|YP_006921733.1| - 0.096 12.5 0.0 0.47 10.3 0.0 2.0 2 0 0 2 2 2 0 Membrane-associated tegument protein PglZ PF08665.7 gi|410669363|ref|YP_006921734.1| - 6.4e-53 179.0 0.4 2e-52 177.5 0.1 2.0 2 0 0 2 2 2 1 PglZ domain Phosphodiest PF01663.17 gi|410669363|ref|YP_006921734.1| - 0.0059 15.9 2.7 0.0091 15.3 0.2 2.2 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase UBA_3 PF09288.5 gi|410669363|ref|YP_006921734.1| - 0.017 14.7 0.5 0.18 11.4 0.1 2.9 2 0 0 2 2 2 0 Fungal ubiquitin-associated domain Toprim_3 PF13362.1 gi|410669363|ref|YP_006921734.1| - 0.064 13.5 0.2 2 8.7 0.0 3.1 3 0 0 3 3 3 0 Toprim domain Lon_2 PF13337.1 gi|410669364|ref|YP_006921735.1| - 2.7e-213 708.3 0.0 3.3e-213 708.1 0.0 1.1 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease Lon_C PF05362.8 gi|410669364|ref|YP_006921735.1| - 1.5e-11 44.0 0.0 2.8e-11 43.1 0.0 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.1 gi|410669364|ref|YP_006921735.1| - 0.0053 16.2 0.4 0.013 15.0 0.1 1.9 2 0 0 2 2 2 1 Subunit ChlI of Mg-chelatase CoiA PF06054.6 gi|410669365|ref|YP_006921736.1| - 1.2e-11 44.1 0.1 1.2e-11 44.1 0.0 2.3 1 1 1 2 2 2 1 Competence protein CoiA-like family PLC-beta_C PF08703.5 gi|410669365|ref|YP_006921736.1| - 0.0026 17.5 2.9 0.0052 16.5 2.0 1.5 1 0 0 1 1 1 1 PLC-beta C terminal Laminin_I PF06008.9 gi|410669365|ref|YP_006921736.1| - 0.01 15.1 3.8 0.04 13.2 1.9 2.0 1 1 1 2 2 2 0 Laminin Domain I Transposase_22 PF02994.9 gi|410669365|ref|YP_006921736.1| - 0.06 11.8 2.7 0.1 11.0 1.9 1.3 1 0 0 1 1 1 0 L1 transposable element Nup54 PF13874.1 gi|410669365|ref|YP_006921736.1| - 0.065 12.9 1.1 0.17 11.5 0.4 1.9 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 GrpE PF01025.14 gi|410669365|ref|YP_006921736.1| - 0.088 12.3 8.9 0.099 12.1 4.0 2.7 2 1 1 3 3 3 0 GrpE DUF465 PF04325.8 gi|410669365|ref|YP_006921736.1| - 0.091 12.4 1.0 11 5.8 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF465) HCMV_UL139 PF12507.3 gi|410669365|ref|YP_006921736.1| - 0.1 12.7 0.3 0.2 11.8 0.2 1.5 1 0 0 1 1 1 0 Human Cytomegalovirus UL139 protein Adenylsucc_synt PF00709.16 gi|410669365|ref|YP_006921736.1| - 0.13 10.8 1.0 0.25 9.9 0.7 1.4 1 0 0 1 1 1 0 Adenylosuccinate synthetase YlqD PF11068.3 gi|410669365|ref|YP_006921736.1| - 0.29 11.1 4.0 0.45 10.5 1.3 2.3 2 1 1 3 3 3 0 YlqD protein Zn-ribbon_8 PF09723.5 gi|410669365|ref|YP_006921736.1| - 0.62 10.0 0.0 0.62 10.0 0.0 3.6 3 1 1 4 4 2 0 Zinc ribbon domain Seryl_tRNA_N PF02403.17 gi|410669365|ref|YP_006921736.1| - 1.1 9.3 4.5 5 7.1 2.1 2.5 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain ALIX_LYPXL_bnd PF13949.1 gi|410669365|ref|YP_006921736.1| - 2.5 7.0 11.1 0.74 8.7 0.9 2.5 1 1 2 3 3 3 0 ALIX V-shaped domain binding to HIV DUF972 PF06156.8 gi|410669365|ref|YP_006921736.1| - 3.1 8.2 10.4 1.7 9.0 0.6 3.8 1 1 3 4 4 4 0 Protein of unknown function (DUF972) zf-RING_5 PF14634.1 gi|410669365|ref|YP_006921736.1| - 5.8 6.7 12.0 3.4 7.4 5.7 2.3 2 0 0 2 2 2 0 zinc-RING finger domain DivIC PF04977.10 gi|410669365|ref|YP_006921736.1| - 6 6.4 18.2 3.9 7.0 0.5 4.2 2 1 2 4 4 4 0 Septum formation initiator IncA PF04156.9 gi|410669365|ref|YP_006921736.1| - 6.1 6.3 8.0 9.8 5.7 5.0 1.8 1 1 0 1 1 1 0 IncA protein ResIII PF04851.10 gi|410669366|ref|YP_006921737.1| - 8.6e-15 55.0 0.0 8.6e-15 55.0 0.0 2.6 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit TPR_11 PF13414.1 gi|410669366|ref|YP_006921737.1| - 6e-13 48.2 3.4 1.3e-10 40.7 0.1 2.9 2 1 1 3 3 3 2 TPR repeat TPR_2 PF07719.12 gi|410669366|ref|YP_006921737.1| - 9e-13 47.0 4.1 0.00024 20.7 0.2 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat Helicase_C PF00271.26 gi|410669366|ref|YP_006921737.1| - 1.1e-12 47.6 0.0 3.2e-12 46.1 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain TPR_8 PF13181.1 gi|410669366|ref|YP_006921737.1| - 1.1e-10 40.4 7.5 0.00055 19.5 0.3 4.2 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|410669366|ref|YP_006921737.1| - 2.2e-10 39.7 4.5 0.00029 20.2 0.0 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|410669366|ref|YP_006921737.1| - 3.7e-09 36.9 0.0 5.6e-05 23.7 0.0 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|410669366|ref|YP_006921737.1| - 4.1e-06 26.6 1.1 0.00022 21.1 0.0 2.8 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|410669366|ref|YP_006921737.1| - 0.00012 22.3 0.1 0.012 15.9 0.0 2.5 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|410669366|ref|YP_006921737.1| - 0.00018 21.4 0.1 0.0046 17.0 0.0 2.8 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|410669366|ref|YP_006921737.1| - 0.0013 19.1 0.0 1 10.1 0.0 3.4 1 1 2 3 3 3 2 Tetratricopeptide repeat DEAD PF00270.24 gi|410669366|ref|YP_006921737.1| - 0.0017 17.8 0.0 0.0061 16.0 0.0 2.0 1 1 0 1 1 1 1 DEAD/DEAH box helicase TPR_7 PF13176.1 gi|410669366|ref|YP_006921737.1| - 0.0035 17.0 0.2 2.2 8.2 0.0 3.1 2 0 0 2 2 2 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|410669366|ref|YP_006921737.1| - 0.0036 17.4 0.8 0.013 15.5 0.2 2.3 1 1 1 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 UvrD-helicase PF00580.16 gi|410669367|ref|YP_006921738.1| - 7.4e-61 206.1 2.9 8.3e-60 202.7 2.0 2.4 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|410669367|ref|YP_006921738.1| - 7.7e-51 173.5 0.8 3.1e-50 171.5 0.2 2.1 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|410669367|ref|YP_006921738.1| - 2.5e-44 151.6 0.0 4.9e-44 150.6 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|410669367|ref|YP_006921738.1| - 1.7e-13 50.0 0.0 5.7e-12 45.2 0.0 2.6 2 0 0 2 2 2 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|410669367|ref|YP_006921738.1| - 1.4e-11 44.4 1.0 2.9e-10 40.2 0.3 3.1 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain Cas_Cas4 PF01930.12 gi|410669367|ref|YP_006921738.1| - 1.5e-05 25.0 2.0 1.7e-05 24.8 0.0 2.2 3 0 0 3 3 3 1 Domain of unknown function DUF83 AAA_12 PF13087.1 gi|410669367|ref|YP_006921738.1| - 2.5e-05 23.7 0.3 0.003 16.9 0.0 3.2 2 1 1 3 3 3 1 AAA domain DUF2800 PF10926.3 gi|410669367|ref|YP_006921738.1| - 3.8e-05 22.9 0.1 8.6e-05 21.8 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2800) Viral_helicase1 PF01443.13 gi|410669367|ref|YP_006921738.1| - 0.00017 21.1 1.2 2.8 7.4 0.0 3.9 4 0 0 4 4 4 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|410669367|ref|YP_006921738.1| - 0.0013 18.3 0.0 0.0047 16.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain TrmB PF01978.14 gi|410669368|ref|YP_006921739.1| - 8.4e-06 25.3 0.0 1.9e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|410669368|ref|YP_006921739.1| - 5.7e-05 22.7 0.0 0.00013 21.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Cas_APE2256 PF09651.5 gi|410669368|ref|YP_006921739.1| - 0.0001 22.0 0.0 0.00015 21.5 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) DUF1887 PF09002.6 gi|410669368|ref|YP_006921739.1| - 0.00011 20.7 0.1 0.00013 20.5 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) HTH_24 PF13412.1 gi|410669368|ref|YP_006921739.1| - 0.00022 20.5 0.0 0.0004 19.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|410669368|ref|YP_006921739.1| - 0.00042 20.0 0.0 0.00085 19.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|410669368|ref|YP_006921739.1| - 0.0016 18.1 0.0 0.003 17.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.5 gi|410669368|ref|YP_006921739.1| - 0.0037 16.8 0.0 0.0057 16.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|410669368|ref|YP_006921739.1| - 0.0063 16.8 0.0 0.013 15.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|410669368|ref|YP_006921739.1| - 0.0069 16.3 0.1 0.022 14.8 0.1 1.9 1 1 0 1 1 1 1 Winged helix DNA-binding domain Cas_Cas02710 PF09670.5 gi|410669368|ref|YP_006921739.1| - 0.0089 14.6 0.1 0.011 14.3 0.1 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) HTH_28 PF13518.1 gi|410669368|ref|YP_006921739.1| - 0.014 15.3 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|410669368|ref|YP_006921739.1| - 0.016 14.6 0.3 0.15 11.4 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|410669368|ref|YP_006921739.1| - 0.024 14.7 0.0 0.052 13.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator tRNA-synt_1d PF00750.14 gi|410669368|ref|YP_006921739.1| - 0.034 12.9 0.1 0.051 12.3 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (R) HTH_11 PF08279.7 gi|410669368|ref|YP_006921739.1| - 0.038 13.6 0.0 0.079 12.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain SPASM PF13186.1 gi|410669370|ref|YP_006921741.1| - 2.1e-11 43.9 2.1 2.1e-11 43.9 1.5 2.6 3 0 0 3 3 3 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.16 gi|410669370|ref|YP_006921741.1| - 8.2e-07 29.3 0.0 1.2e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|410669372|ref|YP_006921743.1| - 9.1e-15 55.2 0.0 1.5e-14 54.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|410669372|ref|YP_006921743.1| - 4.7e-10 39.5 0.4 1.2e-09 38.2 0.3 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|410669372|ref|YP_006921743.1| - 4e-09 36.7 1.9 5.7e-09 36.2 0.4 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|410669372|ref|YP_006921743.1| - 2.5e-06 27.7 1.1 2.5e-06 27.7 0.7 2.5 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Glyco_transf_11 PF01531.11 gi|410669372|ref|YP_006921743.1| - 0.034 13.1 0.2 0.091 11.7 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase family 11 Glycos_transf_2 PF00535.21 gi|410669373|ref|YP_006921744.1| - 1.4e-30 106.1 0.6 2.3e-30 105.4 0.4 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|410669373|ref|YP_006921744.1| - 1.4e-24 87.1 0.0 1.8e-24 86.8 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|410669373|ref|YP_006921744.1| - 3.6e-20 72.1 2.4 6.9e-20 71.2 1.7 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|410669373|ref|YP_006921744.1| - 1.9e-10 40.7 0.0 2.5e-10 40.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_64 PF09258.5 gi|410669373|ref|YP_006921744.1| - 0.0046 16.1 0.0 0.0063 15.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 64 domain Glyco_tranf_2_4 PF13704.1 gi|410669373|ref|YP_006921744.1| - 0.021 15.1 0.1 0.034 14.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.1 gi|410669373|ref|YP_006921744.1| - 0.037 13.2 0.0 0.16 11.2 0.0 1.9 2 1 1 3 3 3 0 Glycosyltransferase like family Glyco_transf_21 PF13506.1 gi|410669373|ref|YP_006921744.1| - 0.13 11.5 0.0 0.22 10.7 0.0 1.5 1 1 0 1 1 1 0 Glycosyl transferase family 21 CbiA PF01656.18 gi|410669375|ref|YP_006921746.1| - 9.9e-21 74.0 2.1 1.6e-20 73.3 0.1 2.1 2 1 1 3 3 3 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|410669375|ref|YP_006921746.1| - 2e-10 40.8 0.0 5.7e-10 39.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|410669375|ref|YP_006921746.1| - 7.2e-08 31.8 0.1 0.00095 18.3 0.0 2.3 2 0 0 2 2 2 2 ATPase MipZ Fer4_NifH PF00142.13 gi|410669375|ref|YP_006921746.1| - 0.00015 21.0 0.7 0.0029 16.8 0.5 2.2 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|410669375|ref|YP_006921746.1| - 0.00023 20.6 0.0 0.068 12.5 0.0 2.5 2 0 0 2 2 2 2 YhjQ protein ArsA_ATPase PF02374.10 gi|410669375|ref|YP_006921746.1| - 0.00062 18.9 0.1 0.0023 17.0 0.0 1.9 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_18 PF13238.1 gi|410669375|ref|YP_006921746.1| - 0.032 14.5 0.8 0.48 10.7 0.0 2.6 2 0 0 2 2 2 0 AAA domain DUF1542 PF07564.6 gi|410669375|ref|YP_006921746.1| - 0.091 12.7 0.4 0.23 11.4 0.3 1.7 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1542) VirC1 PF07015.6 gi|410669375|ref|YP_006921746.1| - 4.1 6.3 5.3 17 4.4 0.1 3.0 4 0 0 4 4 4 0 VirC1 protein Phage_integrase PF00589.17 gi|410669376|ref|YP_006921747.1| - 2e-14 53.6 0.0 1e-13 51.3 0.0 2.1 2 0 0 2 2 2 1 Phage integrase family Cas_Cas1 PF01867.11 gi|410669380|ref|YP_006921751.1| - 4.2e-67 226.1 0.0 5.3e-67 225.8 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 RepB-RCR_reg PF10723.4 gi|410669382|ref|YP_006921753.1| - 0.0024 17.5 0.1 0.0025 17.4 0.1 1.1 1 0 0 1 1 1 1 Replication regulatory protein RepB DnaB_2 PF07261.6 gi|410669382|ref|YP_006921753.1| - 0.0057 16.2 0.0 0.0057 16.2 0.0 1.1 1 0 0 1 1 1 1 Replication initiation and membrane attachment RHH_1 PF01402.16 gi|410669382|ref|YP_006921753.1| - 0.0077 16.0 0.0 0.0084 15.9 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RRM_3 PF08777.6 gi|410669383|ref|YP_006921754.1| - 0.098 12.5 2.4 0.55 10.1 0.3 2.7 1 1 2 3 3 3 0 RNA binding motif CaMBD PF02888.11 gi|410669383|ref|YP_006921754.1| - 0.79 9.5 4.2 4.6 7.1 0.8 2.6 2 1 0 2 2 2 0 Calmodulin binding domain PP28 PF10252.4 gi|410669383|ref|YP_006921754.1| - 1.5 8.8 5.6 0.17 11.9 0.4 2.2 3 1 0 3 3 3 0 Casein kinase substrate phosphoprotein PP28 DNA_pol_B_2 PF03175.8 gi|410669385|ref|YP_006921756.1| - 1.5e-08 33.7 2.8 1.5e-08 33.7 1.9 2.6 3 0 0 3 3 3 1 DNA polymerase type B, organellar and viral DNA_pol_B PF00136.16 gi|410669385|ref|YP_006921756.1| - 1.9e-07 30.2 1.7 0.088 11.5 0.0 3.2 3 0 0 3 3 3 3 DNA polymerase family B Mob_Pre PF01076.14 gi|410669385|ref|YP_006921756.1| - 0.015 14.9 0.2 0.015 14.9 0.2 1.9 2 0 0 2 2 2 0 Plasmid recombination enzyme HTH_37 PF13744.1 gi|410669385|ref|YP_006921756.1| - 0.087 12.6 1.6 0.21 11.4 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4181 PF13789.1 gi|410669386|ref|YP_006921757.1| - 0.037 13.9 0.4 0.037 13.9 0.3 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4181) DUF4118 PF13493.1 gi|410669386|ref|YP_006921757.1| - 1.8 8.7 12.7 0.1 12.7 0.8 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4118) DUF3792 PF12670.2 gi|410669386|ref|YP_006921757.1| - 2.2 8.1 10.2 0.42 10.4 1.9 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3792) bPH_3 PF14470.1 gi|410669387|ref|YP_006921758.1| - 3.3e-10 40.0 1.0 4.6e-10 39.6 0.1 1.7 2 0 0 2 2 2 1 Bacterial PH domain SHOCT PF09851.4 gi|410669387|ref|YP_006921758.1| - 4e-09 35.6 0.7 7.6e-09 34.7 0.5 1.5 1 0 0 1 1 1 1 Short C-terminal domain bPH_1 PF08000.6 gi|410669387|ref|YP_006921758.1| - 0.0097 15.5 0.1 0.025 14.2 0.0 1.8 1 1 0 1 1 1 1 Bacterial PH domain HNH PF01844.18 gi|410669388|ref|YP_006921759.1| - 1.1e-09 38.0 5.5 1.9e-09 37.2 3.8 1.4 1 0 0 1 1 1 1 HNH endonuclease HNH_2 PF13391.1 gi|410669388|ref|YP_006921759.1| - 1.4e-06 27.9 0.9 2.7e-06 27.0 0.6 1.5 1 0 0 1 1 1 1 HNH endonuclease HNH_4 PF13395.1 gi|410669388|ref|YP_006921759.1| - 0.01 15.4 0.1 0.022 14.3 0.1 1.6 1 0 0 1 1 1 0 HNH endonuclease GTA_TIM PF13547.1 gi|410669388|ref|YP_006921759.1| - 0.023 13.7 0.1 0.081 11.8 0.0 1.8 2 0 0 2 2 2 0 GTA TIM-barrel-like domain Cytochrom_NNT PF03264.9 gi|410669388|ref|YP_006921759.1| - 0.033 13.6 4.6 0.055 12.8 3.2 1.3 1 0 0 1 1 1 0 NapC/NirT cytochrome c family, N-terminal region Endonuclease_7 PF02945.10 gi|410669388|ref|YP_006921759.1| - 0.12 12.0 1.7 0.39 10.4 1.2 1.9 1 1 0 1 1 1 0 Recombination endonuclease VII DUF973 PF06157.6 gi|410669391|ref|YP_006921762.1| - 0.45 9.4 10.4 0.5 9.2 7.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF2897 PF11446.3 gi|410669391|ref|YP_006921762.1| - 2.2 8.1 7.8 3.9 7.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2897) PRRSV_2b PF07069.6 gi|410669391|ref|YP_006921762.1| - 2.9 8.2 8.8 0.88 9.9 4.1 1.6 2 0 0 2 2 2 0 Porcine reproductive and respiratory syndrome virus 2b Tetraspannin PF00335.15 gi|410669391|ref|YP_006921762.1| - 3.2 6.9 6.3 3.4 6.8 4.3 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF4190 PF13828.1 gi|410669391|ref|YP_006921762.1| - 5.4 6.6 9.0 0.32 10.5 2.4 1.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4190) PsbQ PF05757.6 gi|410669392|ref|YP_006921763.1| - 0.15 11.4 0.9 0.29 10.5 0.6 1.4 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) Cas_Cas1 PF01867.11 gi|410669394|ref|YP_006921765.1| - 3.1e-70 236.4 0.0 4.4e-70 235.9 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 HTH_11 PF08279.7 gi|410669395|ref|YP_006921766.1| - 0.034 13.7 0.0 0.1 12.2 0.0 1.8 1 0 0 1 1 1 0 HTH domain HTH_5 PF01022.15 gi|410669395|ref|YP_006921766.1| - 0.056 13.1 0.1 0.58 9.8 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family tRNA_NucTran2_2 PF13735.1 gi|410669397|ref|YP_006921768.1| - 0.072 12.9 0.7 0.13 12.1 0.5 1.3 1 0 0 1 1 1 0 tRNA nucleotidyltransferase domain 2 putative DNA_pol_B PF00136.16 gi|410669398|ref|YP_006921769.1| - 5.9e-12 45.1 0.0 0.00031 19.6 0.1 3.2 3 0 0 3 3 3 3 DNA polymerase family B DNA_pol_B_2 PF03175.8 gi|410669398|ref|YP_006921769.1| - 7.4e-08 31.4 0.9 7.4e-08 31.4 0.6 2.5 3 0 0 3 3 3 1 DNA polymerase type B, organellar and viral HTH_37 PF13744.1 gi|410669398|ref|YP_006921769.1| - 0.051 13.3 0.1 0.14 11.9 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Exo_endo_phos PF03372.18 gi|410669399|ref|YP_006921770.1| - 3.6e-07 30.3 0.5 4.6e-07 30.0 0.3 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|410669399|ref|YP_006921770.1| - 5.4e-07 29.2 1.6 9.6e-07 28.4 1.1 1.5 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase Tox-PLDMTX PF15645.1 gi|410669399|ref|YP_006921770.1| - 0.049 13.6 1.4 10 6.1 0.0 2.5 2 1 0 2 2 2 0 Dermonecrotoxin of the Papain-like fold DUF4357 PF14267.1 gi|410669400|ref|YP_006921771.1| - 1.1e-20 72.9 0.1 2.1e-20 72.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4357) GIY-YIG PF01541.19 gi|410669400|ref|YP_006921771.1| - 3.5e-06 27.3 0.2 7.7e-06 26.1 0.2 1.6 1 0 0 1 1 1 1 GIY-YIG catalytic domain DUF1473 PF07341.6 gi|410669400|ref|YP_006921771.1| - 0.11 12.0 0.4 0.4 10.2 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1473) UDG PF03167.14 gi|410669401|ref|YP_006921772.1| - 1.4e-09 37.5 0.0 3.2e-09 36.4 0.0 1.5 1 1 0 1 1 1 1 Uracil DNA glycosylase superfamily Phage_Treg PF04761.7 gi|410669401|ref|YP_006921772.1| - 0.024 14.4 0.1 4.8 7.0 0.0 3.2 3 0 0 3 3 3 0 Lactococcus bacteriophage putative transcription regulator Exo_endo_phos PF03372.18 gi|410669403|ref|YP_006921774.1| - 3.6e-07 30.3 0.5 4.6e-07 30.0 0.3 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|410669403|ref|YP_006921774.1| - 5.4e-07 29.2 1.6 9.6e-07 28.4 1.1 1.5 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase Tox-PLDMTX PF15645.1 gi|410669403|ref|YP_006921774.1| - 0.049 13.6 1.4 10 6.1 0.0 2.5 2 1 0 2 2 2 0 Dermonecrotoxin of the Papain-like fold DUF4357 PF14267.1 gi|410669404|ref|YP_006921775.1| - 2.7e-20 71.6 0.1 5.2e-20 70.7 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4357) GIY-YIG PF01541.19 gi|410669404|ref|YP_006921775.1| - 3e-06 27.5 0.2 6.6e-06 26.4 0.1 1.6 1 0 0 1 1 1 1 GIY-YIG catalytic domain DUF1473 PF07341.6 gi|410669404|ref|YP_006921775.1| - 0.1 12.1 0.3 0.38 10.2 0.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1473) DUF4382 PF14321.1 gi|410669405|ref|YP_006921776.1| - 0.0045 17.0 0.1 0.006 16.6 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) RNA_POL_M_15KD PF02150.11 gi|410669405|ref|YP_006921776.1| - 0.022 14.4 1.0 0.15 11.7 0.1 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit NOB1_Zn_bind PF08772.6 gi|410669405|ref|YP_006921776.1| - 0.038 13.7 0.4 0.11 12.2 0.3 1.8 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-CHY PF05495.7 gi|410669405|ref|YP_006921776.1| - 0.04 14.0 0.8 0.083 13.0 0.5 1.5 1 0 0 1 1 1 0 CHY zinc finger DZR PF12773.2 gi|410669405|ref|YP_006921776.1| - 0.15 11.9 1.8 0.87 9.4 1.5 1.5 1 1 1 2 2 2 0 Double zinc ribbon DUF164 PF02591.10 gi|410669405|ref|YP_006921776.1| - 0.19 11.5 2.0 0.97 9.3 0.5 2.3 2 0 0 2 2 2 0 Putative zinc ribbon domain C1_1 PF00130.17 gi|410669405|ref|YP_006921776.1| - 0.3 10.8 1.8 1.1 9.0 1.1 1.9 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Rpr2 PF04032.11 gi|410669405|ref|YP_006921776.1| - 6.7 6.6 6.8 23 4.9 0.0 2.8 3 0 0 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Lactamase_B_2 PF12706.2 gi|410669406|ref|YP_006921777.1| - 1.1e-22 80.5 0.0 1.3e-22 80.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|410669406|ref|YP_006921777.1| - 1.1e-14 54.5 2.0 1.6e-14 53.9 1.0 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|410669406|ref|YP_006921777.1| - 0.02 14.6 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain DJ-1_PfpI PF01965.19 gi|410669407|ref|YP_006921778.1| - 6.6e-35 119.7 0.5 8.5e-35 119.3 0.3 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|410669407|ref|YP_006921778.1| - 5.5e-15 55.0 0.0 6.2e-15 54.8 0.0 1.0 1 0 0 1 1 1 1 Putative amidotransferase Exonuc_VII_L PF02601.10 gi|410669407|ref|YP_006921778.1| - 0.012 14.8 0.0 0.02 14.0 0.0 1.4 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF3186 PF11382.3 gi|410669407|ref|YP_006921778.1| - 0.043 12.9 0.6 0.62 9.1 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3186) NAD_binding_10 PF13460.1 gi|410669407|ref|YP_006921778.1| - 0.05 13.6 0.3 0.085 12.8 0.1 1.3 1 1 0 1 1 1 0 NADH(P)-binding PAS_4 PF08448.5 gi|410669408|ref|YP_006921779.1| - 9.9e-14 51.3 0.0 1.8e-13 50.4 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|410669408|ref|YP_006921779.1| - 3.2e-13 49.9 0.0 1e-12 48.3 0.0 1.9 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|410669408|ref|YP_006921779.1| - 6.4e-06 25.9 0.0 1.3e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 PAS fold HAMP PF00672.20 gi|410669408|ref|YP_006921779.1| - 0.00012 22.1 0.0 0.25 11.5 0.0 4.1 3 2 2 5 5 4 1 HAMP domain HisKA_3 PF07730.8 gi|410669408|ref|YP_006921779.1| - 0.0043 17.3 0.1 0.15 12.3 0.2 3.3 4 0 0 4 4 4 1 Histidine kinase TBPIP PF07106.8 gi|410669408|ref|YP_006921779.1| - 0.0066 16.0 3.1 0.34 10.4 0.1 3.2 3 0 0 3 3 3 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) PAS_10 PF13596.1 gi|410669408|ref|YP_006921779.1| - 0.01 16.0 0.0 0.064 13.5 0.0 2.2 2 0 0 2 2 2 0 PAS domain DEK_C PF08766.6 gi|410669408|ref|YP_006921779.1| - 0.024 14.3 0.4 6.9 6.5 0.0 3.1 3 0 0 3 3 3 0 DEK C terminal domain Med2 PF11214.3 gi|410669408|ref|YP_006921779.1| - 0.073 13.1 0.0 5.5 7.0 0.0 3.2 2 1 0 2 2 2 0 Mediator complex subunit 2 Tmemb_cc2 PF10267.4 gi|410669408|ref|YP_006921779.1| - 0.08 11.5 0.2 0.72 8.3 0.1 2.0 2 0 0 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein CENP-F_leu_zip PF10473.4 gi|410669408|ref|YP_006921779.1| - 0.24 11.2 4.4 0.82 9.5 1.3 2.5 3 0 0 3 3 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Borrelia_lipo_1 PF05714.6 gi|410669408|ref|YP_006921779.1| - 0.42 9.6 6.7 0.18 10.8 0.1 3.1 3 0 0 3 3 3 0 Borrelia burgdorferi virulent strain associated lipoprotein DUF2051 PF09738.4 gi|410669408|ref|YP_006921779.1| - 0.45 9.7 4.0 0.84 8.8 0.1 2.9 2 1 1 3 3 3 0 Double stranded RNA binding protein (DUF2051) CorA PF01544.13 gi|410669408|ref|YP_006921779.1| - 0.48 9.4 4.7 1.3 8.0 0.0 2.7 3 0 0 3 3 3 0 CorA-like Mg2+ transporter protein DUF3829 PF12889.2 gi|410669408|ref|YP_006921779.1| - 0.53 9.4 4.0 1.1 8.3 0.1 2.6 3 1 0 3 3 3 0 Protein of unknown function (DUF3829) MCPsignal PF00015.16 gi|410669409|ref|YP_006921780.1| - 8.1e-60 201.9 53.5 1.3e-54 185.0 21.1 3.5 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|410669409|ref|YP_006921780.1| - 9.7e-06 25.6 3.4 0.23 11.6 0.0 6.8 7 3 1 8 8 6 1 HAMP domain DUF948 PF06103.6 gi|410669409|ref|YP_006921780.1| - 0.0076 16.0 1.3 0.0076 16.0 0.9 5.2 4 1 1 5 5 5 2 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.7 gi|410669409|ref|YP_006921780.1| - 0.068 12.9 21.2 0.078 12.7 2.2 4.3 3 1 0 3 3 3 0 Protein of unknown function (DUF1664) Reo_sigmaC PF04582.7 gi|410669409|ref|YP_006921780.1| - 0.33 10.0 35.5 0.58 9.2 9.1 3.4 1 1 2 3 3 3 0 Reovirus sigma C capsid protein Spc7 PF08317.6 gi|410669409|ref|YP_006921780.1| - 0.36 9.4 23.8 0.059 12.0 3.9 2.9 1 1 2 3 3 3 0 Spc7 kinetochore protein PhageMin_Tail PF10145.4 gi|410669409|ref|YP_006921780.1| - 0.5 9.9 33.4 0.23 11.0 12.4 3.0 2 1 0 2 2 2 0 Phage-related minor tail protein P4Ha_N PF08336.6 gi|410669409|ref|YP_006921780.1| - 0.51 10.1 6.2 1.9 8.3 0.1 3.7 2 2 2 4 4 4 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region DUF2580 PF10824.3 gi|410669409|ref|YP_006921780.1| - 0.8 10.0 27.4 0.87 9.9 4.2 4.6 2 1 1 4 4 4 0 Protein of unknown function (DUF2580) TMPIT PF07851.8 gi|410669409|ref|YP_006921780.1| - 0.87 8.5 11.5 1.1 8.3 1.4 2.6 2 0 0 2 2 2 0 TMPIT-like protein IncA PF04156.9 gi|410669409|ref|YP_006921780.1| - 1.3 8.5 17.4 11 5.5 4.7 3.2 1 1 2 3 3 3 0 IncA protein GLE1 PF07817.8 gi|410669409|ref|YP_006921780.1| - 1.6 7.6 13.2 1 8.2 1.1 3.0 3 1 0 3 3 3 0 GLE1-like protein Seryl_tRNA_N PF02403.17 gi|410669409|ref|YP_006921780.1| - 2.8 8.0 21.0 0.86 9.6 0.5 4.5 2 2 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain Syntaxin PF00804.20 gi|410669409|ref|YP_006921780.1| - 3.2 7.9 26.6 2 8.6 4.4 5.1 4 1 2 6 6 5 0 Syntaxin Sulfatase_C PF14707.1 gi|410669409|ref|YP_006921780.1| - 4.1 7.6 5.6 12 6.1 0.6 2.9 2 0 0 2 2 2 0 C-terminal region of aryl-sulfatase Atg14 PF10186.4 gi|410669409|ref|YP_006921780.1| - 5 5.9 10.2 0.087 11.7 0.7 2.1 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Cluap1 PF10234.4 gi|410669409|ref|YP_006921780.1| - 6.7 5.8 22.4 0.09 11.9 4.9 2.4 2 0 0 2 2 2 0 Clusterin-associated protein-1 DUF3086 PF11285.3 gi|410669409|ref|YP_006921780.1| - 7 5.3 9.8 4.5 5.9 0.6 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) COG2 PF06148.6 gi|410669409|ref|YP_006921780.1| - 7.4 6.4 19.6 0.37 10.6 0.8 5.0 3 2 2 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 TIR_2 PF13676.1 gi|410669413|ref|YP_006921784.1| - 3e-09 36.9 0.0 5.2e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 TIR domain CpXC PF14353.1 gi|410669413|ref|YP_006921784.1| - 0.0042 17.0 1.2 0.019 14.8 0.9 2.0 1 1 1 2 2 2 2 CpXC protein Lar_restr_allev PF14354.1 gi|410669413|ref|YP_006921784.1| - 0.029 14.6 0.1 0.059 13.6 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Cys_rich_CPXG PF14255.1 gi|410669413|ref|YP_006921784.1| - 0.049 13.4 2.1 0.055 13.3 0.2 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG DZR PF12773.2 gi|410669413|ref|YP_006921784.1| - 0.061 13.1 0.8 0.14 11.9 0.5 1.5 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_S27e PF01667.12 gi|410669413|ref|YP_006921784.1| - 0.12 11.8 0.2 0.24 10.9 0.1 1.6 1 1 0 1 1 1 0 Ribosomal protein S27 DUF1863 PF08937.6 gi|410669413|ref|YP_006921784.1| - 0.14 12.1 0.0 0.56 10.2 0.0 1.8 1 1 0 1 1 1 0 MTH538 TIR-like domain (DUF1863) PyrI_C PF02748.10 gi|410669413|ref|YP_006921784.1| - 0.21 11.0 2.0 1.4 8.4 0.2 2.2 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-BED PF02892.10 gi|410669413|ref|YP_006921784.1| - 0.22 11.3 1.7 12 5.7 0.2 2.2 1 1 1 2 2 2 0 BED zinc finger zinc_ribbon_2 PF13240.1 gi|410669413|ref|YP_006921784.1| - 2.1 7.9 4.6 0.7 9.4 0.5 2.0 2 0 0 2 2 2 0 zinc-ribbon domain HTH_34 PF13601.1 gi|410669414|ref|YP_006921785.1| - 5.6e-05 23.0 0.1 6.8e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|410669414|ref|YP_006921785.1| - 9.2e-05 22.0 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|410669414|ref|YP_006921785.1| - 0.00015 21.0 0.0 0.00023 20.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF2250 PF10007.4 gi|410669414|ref|YP_006921785.1| - 0.00017 21.4 0.1 0.00022 21.0 0.1 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.1 gi|410669414|ref|YP_006921785.1| - 0.0002 21.6 0.1 0.00028 21.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|410669414|ref|YP_006921785.1| - 0.0002 21.1 0.1 0.00027 20.7 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.17 gi|410669414|ref|YP_006921785.1| - 0.00093 18.8 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|410669414|ref|YP_006921785.1| - 0.0013 18.4 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.5 gi|410669414|ref|YP_006921785.1| - 0.0038 16.7 0.0 0.0043 16.6 0.0 1.2 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_5 PF01022.15 gi|410669414|ref|YP_006921785.1| - 0.0048 16.5 0.0 0.0071 15.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FeoC PF09012.5 gi|410669414|ref|YP_006921785.1| - 0.0066 16.1 0.0 0.0099 15.5 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator TFIIE_alpha PF02002.12 gi|410669414|ref|YP_006921785.1| - 0.019 14.4 0.3 0.022 14.2 0.2 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit Replic_Relax PF13814.1 gi|410669414|ref|YP_006921785.1| - 0.023 14.5 0.0 0.027 14.3 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_28 PF13518.1 gi|410669414|ref|YP_006921785.1| - 0.024 14.6 0.1 0.043 13.8 0.0 1.5 2 0 0 2 2 1 0 Helix-turn-helix domain DUF1670 PF07900.6 gi|410669414|ref|YP_006921785.1| - 0.035 13.3 0.0 0.035 13.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) HTH_20 PF12840.2 gi|410669414|ref|YP_006921785.1| - 0.038 13.8 0.0 0.046 13.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|410669414|ref|YP_006921785.1| - 0.046 13.2 0.2 0.37 10.3 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|410669414|ref|YP_006921785.1| - 0.059 12.9 0.0 0.089 12.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|410669414|ref|YP_006921785.1| - 0.077 13.1 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|410669414|ref|YP_006921785.1| - 0.077 13.1 0.0 0.099 12.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|410669414|ref|YP_006921785.1| - 0.094 12.6 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|410669414|ref|YP_006921785.1| - 0.1 12.3 0.1 0.14 11.9 0.0 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|410669414|ref|YP_006921785.1| - 0.12 12.0 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain Hexapep PF00132.19 gi|410669415|ref|YP_006921786.1| - 8.9e-19 66.0 22.7 9.9e-07 28.0 3.2 4.4 4 1 0 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|410669415|ref|YP_006921786.1| - 4.3e-08 32.5 11.7 4.1e-06 26.2 1.5 3.0 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase DUF188 PF02639.9 gi|410669415|ref|YP_006921786.1| - 0.0056 16.1 0.1 0.0093 15.4 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 Fucokinase PF07959.7 gi|410669415|ref|YP_006921786.1| - 0.62 8.5 4.7 1.1 7.7 0.9 2.1 1 1 2 3 3 3 0 L-fucokinase PMSR PF01625.16 gi|410669416|ref|YP_006921787.1| - 1e-53 181.4 0.4 1.3e-53 181.0 0.3 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase G3P_acyltransf PF02660.10 gi|410669417|ref|YP_006921788.1| - 0.042 13.4 0.4 0.042 13.4 0.3 1.0 1 0 0 1 1 1 0 Glycerol-3-phosphate acyltransferase PAS_9 PF13426.1 gi|410669418|ref|YP_006921789.1| - 4.7e-47 158.6 0.0 1.6e-14 54.1 0.0 4.6 4 1 0 4 4 4 4 PAS domain PAS_4 PF08448.5 gi|410669418|ref|YP_006921789.1| - 5.2e-43 145.5 0.0 1.8e-18 66.5 0.0 5.1 4 1 0 4 4 4 3 PAS fold PAS PF00989.19 gi|410669418|ref|YP_006921789.1| - 2.3e-38 130.4 0.0 5.7e-15 55.0 0.0 4.9 4 1 0 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|410669418|ref|YP_006921789.1| - 1.1e-31 108.7 0.0 2.7e-31 107.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|410669418|ref|YP_006921789.1| - 3.1e-21 75.1 1.8 9.1e-21 73.6 0.0 2.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|410669418|ref|YP_006921789.1| - 1.7e-20 72.0 0.0 2e-05 24.3 0.0 4.6 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.6 gi|410669418|ref|YP_006921789.1| - 2.2e-10 40.4 0.0 0.0024 17.9 0.0 4.4 3 1 0 3 3 3 2 PAS fold PAS_7 PF12860.2 gi|410669418|ref|YP_006921789.1| - 0.00045 20.2 0.0 3.2 7.8 0.0 3.6 4 0 0 4 4 3 2 PAS fold PAS_10 PF13596.1 gi|410669418|ref|YP_006921789.1| - 0.0012 19.0 0.0 0.12 12.6 0.0 3.5 4 0 0 4 4 4 1 PAS domain HATPase_c_3 PF13589.1 gi|410669418|ref|YP_006921789.1| - 0.011 15.3 0.0 0.027 14.1 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPS11_C PF12451.3 gi|410669418|ref|YP_006921789.1| - 0.16 11.8 2.5 3.9 7.3 0.0 3.3 3 0 0 3 3 3 0 Vacuolar protein sorting protein 11 C terminal NifU_N PF01592.11 gi|410669419|ref|YP_006921790.1| - 1.5e-43 147.7 0.0 2.4e-43 147.1 0.0 1.3 1 0 0 1 1 1 1 NifU-like N terminal domain DUF59 PF01883.14 gi|410669419|ref|YP_006921790.1| - 1.1e-12 47.6 1.1 2.9e-12 46.3 0.5 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF59 Aminotran_5 PF00266.14 gi|410669420|ref|YP_006921791.1| - 3.2e-76 256.4 0.2 3.9e-76 256.2 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|410669420|ref|YP_006921791.1| - 2.1e-07 30.3 0.0 2.6e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|410669420|ref|YP_006921791.1| - 1.9e-06 27.1 0.1 2.9e-06 26.5 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|410669420|ref|YP_006921791.1| - 3.6e-05 22.2 0.4 6.1e-05 21.4 0.3 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|410669420|ref|YP_006921791.1| - 0.00043 19.3 0.0 0.0006 18.8 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II SLA_LP_auto_ag PF05889.8 gi|410669420|ref|YP_006921791.1| - 0.067 11.6 0.1 0.11 10.9 0.0 1.4 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Pyridoxal_deC PF00282.14 gi|410669420|ref|YP_006921791.1| - 0.12 10.7 0.0 0.24 9.8 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain DrsE_2 PF13686.1 gi|410669421|ref|YP_006921792.1| - 3e-34 117.9 0.1 9.4e-34 116.3 0.1 1.6 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|410669421|ref|YP_006921792.1| - 0.00018 21.5 0.0 0.00029 20.8 0.0 1.4 1 1 0 1 1 1 1 DsrE/DsrF-like family TusA PF01206.12 gi|410669422|ref|YP_006921793.1| - 3.1e-22 77.9 0.2 3.4e-22 77.8 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|410669422|ref|YP_006921793.1| - 0.0071 15.8 0.0 0.53 9.8 0.0 2.0 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2249) Metalloenzyme PF01676.13 gi|410669423|ref|YP_006921794.1| - 2e-11 43.7 1.6 8.9e-11 41.6 0.0 2.3 2 1 0 2 2 2 1 Metalloenzyme superfamily Sulfatase PF00884.18 gi|410669423|ref|YP_006921794.1| - 4.7e-06 26.0 0.0 7e-06 25.4 0.0 1.4 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|410669423|ref|YP_006921794.1| - 1.5e-05 24.5 1.0 3.8e-05 23.1 0.2 2.0 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase MFS_1 PF07690.11 gi|410669424|ref|YP_006921795.1| - 9.9e-38 129.7 52.1 4e-27 94.8 13.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DDE_Tnp_1 PF01609.16 gi|410669425|ref|YP_006921796.1| - 4.6e-09 36.1 2.6 5.2e-08 32.7 1.8 2.1 1 1 0 1 1 1 1 Transposase DDE domain Amnionless PF14828.1 gi|410669425|ref|YP_006921796.1| - 3.1 6.1 5.0 0.63 8.4 1.1 1.4 2 0 0 2 2 2 0 Amnionless DDE_Tnp_1_6 PF13751.1 gi|410669426|ref|YP_006921797.1| - 8.4e-05 22.5 0.5 9.1e-05 22.4 0.3 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|410669426|ref|YP_006921797.1| - 0.019 14.4 0.1 0.021 14.3 0.1 1.1 1 0 0 1 1 1 0 Transposase DDE domain Thg1C PF14413.1 gi|410669426|ref|YP_006921797.1| - 0.089 12.4 0.0 0.15 11.7 0.0 1.5 1 1 0 1 1 1 0 Thg1 C terminal domain Pox_E2-like PF04497.7 gi|410669427|ref|YP_006921798.1| - 0.071 11.1 0.4 0.26 9.2 0.0 1.7 2 0 0 2 2 2 0 Poxviridae protein DUF2551 PF10826.3 gi|410669428|ref|YP_006921799.1| - 4e-18 65.0 0.7 4.4e-18 64.9 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) TrmB PF01978.14 gi|410669429|ref|YP_006921800.1| - 0.1 12.3 0.0 0.32 10.7 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DsbD_2 PF13386.1 gi|410669431|ref|YP_006921802.1| - 9.5e-18 64.6 20.5 1.3e-17 64.1 14.2 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_4 PF13462.1 gi|410669432|ref|YP_006921803.1| - 0.022 14.7 0.0 0.028 14.4 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin DUF1450 PF07293.6 gi|410669432|ref|YP_006921803.1| - 0.1 12.5 0.1 0.15 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1450) Ibs_toxin PF13956.1 gi|410669432|ref|YP_006921803.1| - 0.16 11.8 8.5 0.27 11.0 5.9 1.4 1 0 0 1 1 1 0 Toxin Ibs, type I toxin-antitoxin system DrsE PF02635.10 gi|410669433|ref|YP_006921804.1| - 0.014 15.4 0.0 0.015 15.3 0.0 1.0 1 0 0 1 1 1 0 DsrE/DsrF-like family Egg_lysin PF01303.12 gi|410669433|ref|YP_006921804.1| - 0.026 14.5 0.0 0.029 14.3 0.0 1.0 1 0 0 1 1 1 0 Egg lysin (Sperm-lysin) FeS PF04060.8 gi|410669434|ref|YP_006921805.1| - 1e-12 47.3 0.5 1.8e-12 46.6 0.4 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster HTH_20 PF12840.2 gi|410669434|ref|YP_006921805.1| - 2.3e-08 33.7 0.6 6.7e-08 32.2 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|410669434|ref|YP_006921805.1| - 0.00043 19.8 2.3 0.00051 19.6 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family ArsR PF09824.4 gi|410669434|ref|YP_006921805.1| - 0.0094 15.2 0.2 0.07 12.4 0.0 2.1 2 0 0 2 2 2 1 ArsR transcriptional regulator HTH_45 PF14947.1 gi|410669434|ref|YP_006921805.1| - 0.019 14.7 0.0 0.05 13.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix GntP_permease PF02447.11 gi|410669435|ref|YP_006921806.1| - 3.1e-47 161.0 30.6 4.1e-47 160.6 21.2 1.1 1 0 0 1 1 1 1 GntP family permease DUF2852 PF11014.3 gi|410669435|ref|YP_006921806.1| - 0.018 14.9 0.9 1.3 8.9 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2852) DUF169 PF02596.10 gi|410669436|ref|YP_006921807.1| - 6.6e-50 169.4 0.1 7.8e-50 169.2 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 GTF2I PF02946.9 gi|410669436|ref|YP_006921807.1| - 0.035 13.9 0.0 0.58 10.0 0.0 2.3 2 0 0 2 2 2 0 GTF2I-like repeat HTH_24 PF13412.1 gi|410669437|ref|YP_006921808.1| - 0.013 14.8 0.3 0.022 14.1 0.2 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF3782 PF12644.2 gi|410669437|ref|YP_006921808.1| - 0.014 15.1 0.6 0.021 14.5 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3782) FeoC PF09012.5 gi|410669437|ref|YP_006921808.1| - 0.051 13.2 0.1 0.051 13.2 0.0 2.3 3 0 0 3 3 3 0 FeoC like transcriptional regulator DUF4423 PF14394.1 gi|410669437|ref|YP_006921808.1| - 0.065 12.7 0.5 0.45 10.0 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) Glyco_hydro_98M PF08306.6 gi|410669437|ref|YP_006921808.1| - 0.081 11.6 0.0 0.1 11.2 0.0 1.0 1 0 0 1 1 1 0 Glycosyl hydrolase family 98 DUF2202 PF09968.4 gi|410669437|ref|YP_006921808.1| - 0.092 12.4 0.1 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein domain (DUF2202) T2SF PF00482.18 gi|410669437|ref|YP_006921808.1| - 0.11 12.4 0.7 1 9.3 0.1 2.0 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F MarR_2 PF12802.2 gi|410669437|ref|YP_006921808.1| - 0.14 11.8 0.1 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF937 PF06078.6 gi|410669437|ref|YP_006921808.1| - 0.14 12.3 0.3 0.19 11.9 0.2 1.4 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF937) ArsD PF06953.6 gi|410669438|ref|YP_006921809.1| - 2.7e-40 137.3 0.0 3e-40 137.2 0.0 1.0 1 0 0 1 1 1 1 Arsenical resistance operon trans-acting repressor ArsD Thioredoxin_3 PF13192.1 gi|410669438|ref|YP_006921809.1| - 0.0038 16.9 0.2 0.0073 16.1 0.2 1.6 1 1 0 1 1 1 1 Thioredoxin domain ArsA_ATPase PF02374.10 gi|410669439|ref|YP_006921810.1| - 1.2e-05 24.5 1.8 4.1e-05 22.7 1.4 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.1 gi|410669439|ref|YP_006921810.1| - 2.9e-05 23.5 0.0 3.4e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|410669439|ref|YP_006921810.1| - 0.00011 21.2 0.0 0.00014 20.8 0.0 1.1 1 0 0 1 1 1 1 NB-ARC domain CbiA PF01656.18 gi|410669439|ref|YP_006921810.1| - 0.0034 16.8 2.7 0.0048 16.3 1.9 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.1 gi|410669439|ref|YP_006921810.1| - 0.024 14.6 0.0 0.028 14.3 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain PIF1 PF05970.9 gi|410669439|ref|YP_006921810.1| - 0.03 13.2 0.0 0.034 13.1 0.0 1.1 1 0 0 1 1 1 0 PIF1-like helicase PhoH PF02562.11 gi|410669439|ref|YP_006921810.1| - 0.031 13.5 0.0 0.036 13.2 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein AAA_30 PF13604.1 gi|410669439|ref|YP_006921810.1| - 0.071 12.6 0.0 0.082 12.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|410669439|ref|YP_006921810.1| - 0.075 13.2 2.4 0.2 11.8 0.7 1.9 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|410669439|ref|YP_006921810.1| - 0.24 12.2 1.8 0.47 11.2 0.5 1.8 2 0 0 2 2 2 0 AAA domain ArsA_ATPase PF02374.10 gi|410669440|ref|YP_006921811.1| - 1.4e-116 388.8 4.8 3.4e-76 256.2 0.0 3.8 2 2 1 3 3 3 3 Anion-transporting ATPase CbiA PF01656.18 gi|410669440|ref|YP_006921811.1| - 4.2e-30 104.6 0.2 3.6e-15 55.8 0.0 2.4 2 0 0 2 2 2 2 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_25 PF13481.1 gi|410669440|ref|YP_006921811.1| - 5.5e-13 48.7 0.1 3.4e-08 33.1 0.0 2.6 2 1 0 2 2 2 2 AAA domain Fer4_NifH PF00142.13 gi|410669440|ref|YP_006921811.1| - 3.9e-10 39.3 0.0 0.00035 19.8 0.0 2.5 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PhoH PF02562.11 gi|410669440|ref|YP_006921811.1| - 7.4e-10 38.4 0.7 3.8e-05 23.0 0.1 3.0 2 1 1 3 3 3 2 PhoH-like protein IstB_IS21 PF01695.12 gi|410669440|ref|YP_006921811.1| - 1.2e-09 37.8 0.0 0.0014 18.0 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_31 PF13614.1 gi|410669440|ref|YP_006921811.1| - 2.5e-08 33.9 0.1 0.00041 20.3 0.0 3.4 3 1 0 3 3 3 2 AAA domain ArgK PF03308.11 gi|410669440|ref|YP_006921811.1| - 5.8e-08 31.8 0.4 0.0063 15.3 0.1 2.3 2 0 0 2 2 2 2 ArgK protein YhjQ PF06564.7 gi|410669440|ref|YP_006921811.1| - 3e-07 30.0 0.0 0.00086 18.7 0.0 2.9 3 1 0 4 4 3 2 YhjQ protein AAA_30 PF13604.1 gi|410669440|ref|YP_006921811.1| - 5.5e-07 29.3 0.7 0.0037 16.8 0.2 2.7 2 1 0 2 2 2 2 AAA domain MipZ PF09140.6 gi|410669440|ref|YP_006921811.1| - 2.7e-06 26.6 6.4 0.0053 15.8 0.7 3.5 4 1 0 4 4 3 2 ATPase MipZ SRP54 PF00448.17 gi|410669440|ref|YP_006921811.1| - 5.6e-06 25.9 7.6 0.023 14.1 0.5 3.8 3 1 1 4 4 4 2 SRP54-type protein, GTPase domain APS_kinase PF01583.15 gi|410669440|ref|YP_006921811.1| - 7.3e-06 25.7 0.1 0.044 13.4 0.0 2.6 2 0 0 2 2 2 2 Adenylylsulphate kinase AAA PF00004.24 gi|410669440|ref|YP_006921811.1| - 8.6e-06 25.9 2.6 0.03 14.5 0.4 3.8 2 1 1 3 3 2 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|410669440|ref|YP_006921811.1| - 1.1e-05 24.4 0.4 0.002 17.0 0.1 2.4 2 0 0 2 2 2 1 NB-ARC domain AAA_19 PF13245.1 gi|410669440|ref|YP_006921811.1| - 1.8e-05 24.3 3.0 0.0045 16.7 0.0 3.4 4 0 0 4 4 2 1 Part of AAA domain PIF1 PF05970.9 gi|410669440|ref|YP_006921811.1| - 5.1e-05 22.4 0.0 0.056 12.3 0.0 2.4 2 0 0 2 2 2 2 PIF1-like helicase ATP_bind_1 PF03029.12 gi|410669440|ref|YP_006921811.1| - 5.1e-05 22.9 0.2 0.043 13.3 0.0 2.6 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.1 gi|410669440|ref|YP_006921811.1| - 5.2e-05 23.3 0.0 0.16 11.9 0.0 2.7 2 1 0 2 2 2 2 AAA ATPase domain MobB PF03205.9 gi|410669440|ref|YP_006921811.1| - 7.6e-05 22.4 1.0 0.097 12.3 0.1 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|410669440|ref|YP_006921811.1| - 0.00011 22.4 0.7 0.043 14.1 0.0 3.6 3 0 0 3 3 3 1 AAA domain AAA_29 PF13555.1 gi|410669440|ref|YP_006921811.1| - 0.00016 21.1 1.5 0.38 10.3 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain VirC1 PF07015.6 gi|410669440|ref|YP_006921811.1| - 0.00024 20.2 1.2 0.27 10.2 0.0 2.5 2 1 0 2 2 2 2 VirC1 protein T2SE PF00437.15 gi|410669440|ref|YP_006921811.1| - 0.00033 19.6 1.2 0.065 12.1 0.4 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein AdoHcyase_NAD PF00670.16 gi|410669440|ref|YP_006921811.1| - 0.00055 19.8 0.1 0.4 10.5 0.0 2.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AAA_17 PF13207.1 gi|410669440|ref|YP_006921811.1| - 0.00065 20.5 0.1 0.28 11.9 0.1 3.0 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|410669440|ref|YP_006921811.1| - 0.0015 18.2 3.1 1.6 8.4 0.1 3.7 3 0 0 3 3 3 1 NTPase Helicase_RecD PF05127.9 gi|410669440|ref|YP_006921811.1| - 0.0029 17.2 0.3 2.1 7.9 0.0 3.2 3 0 0 3 3 3 1 Helicase RuvB_N PF05496.7 gi|410669440|ref|YP_006921811.1| - 0.0039 16.2 0.1 0.078 12.0 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus NAD_Gly3P_dh_N PF01210.18 gi|410669440|ref|YP_006921811.1| - 0.0044 16.7 0.0 0.032 13.9 0.0 2.3 3 0 0 3 3 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF2868 PF11067.3 gi|410669440|ref|YP_006921811.1| - 0.0058 15.8 0.1 1 8.4 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2868) ABC_tran PF00005.22 gi|410669440|ref|YP_006921811.1| - 0.0064 16.8 1.4 0.35 11.1 0.0 3.1 2 2 0 2 2 2 1 ABC transporter Arch_ATPase PF01637.13 gi|410669440|ref|YP_006921811.1| - 0.007 16.0 0.0 0.31 10.6 0.0 2.5 2 0 0 2 2 2 1 Archaeal ATPase adh_short_C2 PF13561.1 gi|410669440|ref|YP_006921811.1| - 0.0087 15.8 0.0 0.97 9.1 0.0 2.3 2 0 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase NACHT PF05729.7 gi|410669440|ref|YP_006921811.1| - 0.0093 15.6 1.1 6.7 6.3 0.1 3.3 3 0 0 3 3 2 0 NACHT domain YjeF_N PF03853.10 gi|410669440|ref|YP_006921811.1| - 0.015 14.9 0.0 4.9 6.7 0.0 2.7 2 0 0 2 2 2 0 YjeF-related protein N-terminus AAA_10 PF12846.2 gi|410669440|ref|YP_006921811.1| - 0.015 14.7 0.0 1.9 7.8 0.0 2.5 2 0 0 2 2 2 0 AAA-like domain MGS PF02142.17 gi|410669440|ref|YP_006921811.1| - 0.016 15.0 0.1 1.8 8.5 0.0 3.2 3 0 0 3 3 3 0 MGS-like domain AAA_33 PF13671.1 gi|410669440|ref|YP_006921811.1| - 0.023 14.5 0.1 0.32 10.8 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|410669440|ref|YP_006921811.1| - 0.026 14.2 0.7 7.3 6.3 0.3 3.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) NAD_binding_7 PF13241.1 gi|410669440|ref|YP_006921811.1| - 0.038 14.2 0.7 3.6 7.8 0.0 3.0 3 0 0 3 3 3 0 Putative NAD(P)-binding DUF258 PF03193.11 gi|410669440|ref|YP_006921811.1| - 0.04 13.1 0.1 3.2 6.9 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function, DUF258 KTI12 PF08433.5 gi|410669440|ref|YP_006921811.1| - 0.049 12.8 0.1 9.6 5.3 0.0 2.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 CTP_synth_N PF06418.9 gi|410669440|ref|YP_006921811.1| - 0.055 12.5 0.9 17 4.4 0.0 3.2 3 0 0 3 3 3 0 CTP synthase N-terminus AAA_24 PF13479.1 gi|410669440|ref|YP_006921811.1| - 0.057 12.9 6.6 0.44 10.0 0.1 3.6 2 2 0 2 2 2 0 AAA domain Miro PF08477.8 gi|410669440|ref|YP_006921811.1| - 0.071 13.6 0.2 2.4 8.6 0.0 2.9 2 0 0 2 2 2 0 Miro-like protein Zeta_toxin PF06414.7 gi|410669440|ref|YP_006921811.1| - 0.086 11.9 1.8 8.4 5.4 0.2 2.8 2 1 0 2 2 2 0 Zeta toxin AAA_23 PF13476.1 gi|410669440|ref|YP_006921811.1| - 0.18 12.1 2.8 1.8 8.8 0.1 2.9 1 1 1 2 2 2 0 AAA domain AAA_26 PF13500.1 gi|410669440|ref|YP_006921811.1| - 1.9 8.0 5.0 1.2 8.7 0.2 2.8 3 1 0 3 3 3 0 AAA domain LMWPc PF01451.16 gi|410669441|ref|YP_006921812.1| - 1.6e-27 96.5 0.2 2.1e-27 96.1 0.1 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase NUC130_3NT PF08158.7 gi|410669442|ref|YP_006921813.1| - 0.14 12.4 0.6 3.6 7.9 0.0 2.7 1 1 2 3 3 3 0 NUC130/3NT domain MtrA PF04208.9 gi|410669443|ref|YP_006921814.1| - 1.3e-49 168.0 0.1 1.6e-49 167.7 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A DGC PF08859.6 gi|410669444|ref|YP_006921815.1| - 1.2e-34 118.4 2.5 1.6e-34 118.0 1.8 1.1 1 0 0 1 1 1 1 DGC domain Thioredoxin_3 PF13192.1 gi|410669445|ref|YP_006921816.1| - 4e-28 97.0 2.5 4.3e-28 96.9 1.7 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|410669445|ref|YP_006921816.1| - 3.2e-05 23.8 0.3 6e-05 22.9 0.2 1.5 1 1 0 1 1 1 1 Glutaredoxin ArsD PF06953.6 gi|410669445|ref|YP_006921816.1| - 0.021 15.0 0.1 0.032 14.4 0.0 1.3 1 1 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD DUF2703 PF10865.3 gi|410669445|ref|YP_006921816.1| - 0.037 13.9 0.1 0.04 13.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2703) Thioredoxin PF00085.15 gi|410669445|ref|YP_006921816.1| - 0.052 13.2 0.2 0.056 13.1 0.1 1.1 1 0 0 1 1 1 0 Thioredoxin DUF1525 PF07511.6 gi|410669445|ref|YP_006921816.1| - 0.054 13.4 0.2 0.061 13.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1525) Chorion_1 PF01723.11 gi|410669445|ref|YP_006921816.1| - 0.063 13.1 0.0 0.067 13.0 0.0 1.1 1 0 0 1 1 1 0 Chorion protein DUF836 PF05768.9 gi|410669445|ref|YP_006921816.1| - 0.14 12.4 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_4 PF13462.1 gi|410669445|ref|YP_006921816.1| - 0.22 11.5 0.8 1.3 9.0 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin Metallophos_2 PF12850.2 gi|410669446|ref|YP_006921817.1| - 2.7e-13 50.0 0.0 3.6e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain BING4CT PF08149.6 gi|410669446|ref|YP_006921817.1| - 0.079 12.4 0.1 6.6 6.3 0.0 2.4 2 1 0 2 2 2 0 BING4CT (NUC141) domain RecR PF02132.10 gi|410669447|ref|YP_006921818.1| - 0.00024 20.4 1.1 0.023 14.0 0.0 2.1 1 1 1 2 2 2 2 RecR protein UPF0547 PF10571.4 gi|410669447|ref|YP_006921818.1| - 0.00054 19.5 1.6 0.001 18.7 1.1 1.5 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|410669447|ref|YP_006921818.1| - 0.0029 17.0 0.5 0.0046 16.3 0.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain FYVE PF01363.16 gi|410669447|ref|YP_006921818.1| - 0.0038 17.0 1.0 0.0038 17.0 0.7 1.2 1 0 0 1 1 1 1 FYVE zinc finger DZR PF12773.2 gi|410669447|ref|YP_006921818.1| - 0.0048 16.6 0.7 0.0053 16.5 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|410669447|ref|YP_006921818.1| - 0.0074 16.0 1.8 0.0074 16.0 1.2 1.2 1 0 0 1 1 1 1 zinc-ribbons TF_Zn_Ribbon PF08271.7 gi|410669447|ref|YP_006921818.1| - 0.02 14.2 0.3 0.028 13.7 0.2 1.2 1 0 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|410669447|ref|YP_006921818.1| - 0.048 13.3 1.8 0.06 13.0 1.2 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF3449 PF11931.3 gi|410669447|ref|YP_006921818.1| - 0.066 12.7 0.0 0.071 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3449) Spt4 PF06093.8 gi|410669447|ref|YP_006921818.1| - 0.068 13.0 0.4 0.076 12.9 0.3 1.1 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger PROCN PF08083.6 gi|410669447|ref|YP_006921818.1| - 0.13 10.7 0.3 0.14 10.6 0.2 1.0 1 0 0 1 1 1 0 PROCN (NUC071) domain Cys_rich_CPCC PF14206.1 gi|410669447|ref|YP_006921818.1| - 0.14 11.7 1.0 0.14 11.7 0.7 1.2 1 0 0 1 1 1 0 Cysteine-rich CPCC DNA_RNApol_7kD PF03604.8 gi|410669447|ref|YP_006921818.1| - 0.16 11.4 0.7 0.24 10.9 0.5 1.2 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.11 gi|410669447|ref|YP_006921818.1| - 0.17 11.6 1.8 0.27 10.9 1.3 1.4 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Rubredoxin PF00301.15 gi|410669447|ref|YP_006921818.1| - 0.54 10.1 2.8 14 5.6 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin Auto_anti-p27 PF06677.7 gi|410669447|ref|YP_006921818.1| - 0.68 9.7 5.3 10 5.9 4.0 2.1 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) VP_N-CPKC PF11475.3 gi|410669447|ref|YP_006921818.1| - 0.94 9.0 3.3 0.56 9.7 0.2 2.0 2 0 0 2 2 2 0 Virion protein N terminal domain Zn-ribbon_8 PF09723.5 gi|410669447|ref|YP_006921818.1| - 2.3 8.2 4.9 2.6 8.0 0.4 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Mut7-C PF01927.11 gi|410669447|ref|YP_006921818.1| - 7.3 6.5 6.7 30 4.5 4.7 1.8 1 1 0 1 1 1 0 Mut7-C RNAse domain PBP_like_2 PF12849.2 gi|410669449|ref|YP_006921819.1| - 7.7e-42 143.6 0.8 2.1e-41 142.2 0.6 1.6 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|410669449|ref|YP_006921819.1| - 5.3e-18 64.6 0.0 6.9e-18 64.2 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|410669449|ref|YP_006921819.1| - 0.0081 15.8 0.0 0.019 14.6 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|410669449|ref|YP_006921819.1| - 0.022 14.0 0.0 0.038 13.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein DUF707 PF05212.7 gi|410669449|ref|YP_006921819.1| - 0.042 12.9 0.0 0.06 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF707) Phosphonate-bd PF12974.2 gi|410669450|ref|YP_006921821.1| - 1.4e-42 145.7 0.0 1.7e-42 145.5 0.0 1.0 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|410669450|ref|YP_006921821.1| - 3.7e-05 23.0 0.0 0.001 18.4 0.0 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|410669450|ref|YP_006921821.1| - 0.0096 15.5 0.0 0.024 14.2 0.0 1.8 1 1 1 2 2 2 1 NMT1/THI5 like Peptidase_M91 PF14891.1 gi|410669450|ref|YP_006921821.1| - 0.069 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Effector protein HATPase_c PF02518.21 gi|410669451|ref|YP_006921822.1| - 8.4e-27 93.0 0.4 2.9e-26 91.3 0.0 2.2 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|410669451|ref|YP_006921822.1| - 3.6e-12 46.1 0.1 1.1e-11 44.5 0.1 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.20 gi|410669451|ref|YP_006921822.1| - 2.1e-09 37.4 1.5 4.3e-09 36.4 0.0 2.3 2 0 0 2 2 2 1 HAMP domain PAS_9 PF13426.1 gi|410669451|ref|YP_006921822.1| - 4.1e-09 36.7 0.0 1.2e-08 35.2 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|410669451|ref|YP_006921822.1| - 0.00056 19.5 0.2 0.0015 18.1 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|410669451|ref|YP_006921822.1| - 0.013 15.2 0.0 0.047 13.4 0.0 2.1 2 0 0 2 2 2 0 PAS fold HATPase_c_5 PF14501.1 gi|410669451|ref|YP_006921822.1| - 0.022 14.4 0.1 0.11 12.1 0.0 2.3 3 0 0 3 3 3 0 GHKL domain PAS_8 PF13188.1 gi|410669451|ref|YP_006921822.1| - 0.025 14.4 0.0 0.068 13.0 0.0 1.8 1 0 0 1 1 1 0 PAS domain HAD_2 PF13419.1 gi|410669452|ref|YP_006921823.1| - 1.2e-21 77.7 0.0 1.4e-21 77.4 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|410669452|ref|YP_006921823.1| - 2.5e-07 31.3 0.1 1.4e-05 25.5 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|410669452|ref|YP_006921823.1| - 1.6e-06 27.6 0.0 3.2e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like NIF PF03031.13 gi|410669452|ref|YP_006921823.1| - 0.00018 21.1 0.0 0.0075 15.9 0.0 2.1 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase NT5C PF06941.7 gi|410669452|ref|YP_006921823.1| - 0.082 12.4 0.4 0.29 10.5 0.3 2.0 1 1 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Glyco_trans_1_3 PF13528.1 gi|410669453|ref|YP_006921824.1| - 1.3e-28 100.1 0.0 4e-16 59.0 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.11 gi|410669453|ref|YP_006921824.1| - 2.4e-14 53.3 0.0 7.5e-14 51.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_28 PF03033.15 gi|410669453|ref|YP_006921824.1| - 1.4e-06 28.1 0.0 4.2e-06 26.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_4_2 PF13477.1 gi|410669453|ref|YP_006921824.1| - 0.00037 20.3 0.2 0.00067 19.4 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|410669453|ref|YP_006921824.1| - 0.0047 16.6 0.0 0.026 14.2 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 RHH_4 PF13467.1 gi|410669453|ref|YP_006921824.1| - 0.012 15.4 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 Ribbon-helix-helix domain Glyco_trans_1_4 PF13692.1 gi|410669453|ref|YP_006921824.1| - 0.035 14.2 0.0 0.091 12.9 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferases group 1 PHP PF02811.14 gi|410669454|ref|YP_006921825.1| - 0.00045 20.0 0.0 0.00081 19.2 0.0 1.5 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|410669454|ref|YP_006921825.1| - 0.047 13.1 0.0 0.093 12.2 0.0 1.6 1 0 0 1 1 1 0 PHP-associated Glyco_trans_1_3 PF13528.1 gi|410669455|ref|YP_006921826.1| - 1.6e-33 116.2 0.0 1.1e-32 113.5 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 1 Glyco_transf_28 PF03033.15 gi|410669455|ref|YP_006921826.1| - 5.8e-09 35.8 0.0 1.1e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Glyco_tran_28_C PF04101.11 gi|410669455|ref|YP_006921826.1| - 2e-08 34.0 0.0 3.3e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain UDPGT PF00201.13 gi|410669455|ref|YP_006921826.1| - 2.8e-06 26.1 0.0 4.4e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 UDP-glucoronosyl and UDP-glucosyl transferase Glyco_trans_4_2 PF13477.1 gi|410669455|ref|YP_006921826.1| - 3.1e-05 23.8 0.0 7.8e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|410669455|ref|YP_006921826.1| - 4.2e-05 23.7 0.0 6.9e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|410669455|ref|YP_006921826.1| - 0.00017 21.7 0.0 0.00041 20.4 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|410669455|ref|YP_006921826.1| - 0.00082 19.1 0.0 0.0035 17.0 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Peptidase_M20 PF01546.23 gi|410669455|ref|YP_006921826.1| - 0.0021 17.6 0.0 0.0023 17.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Glycos_transf_1 PF00534.15 gi|410669455|ref|YP_006921826.1| - 0.0027 17.1 0.0 0.0052 16.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 RPAP1_N PF08621.5 gi|410669456|ref|YP_006921827.1| - 0.038 13.5 0.4 0.05 13.1 0.3 1.3 1 0 0 1 1 1 0 RPAP1-like, N-terminal Antitoxin-MazE PF04014.13 gi|410669457|ref|YP_006921828.1| - 5.8e-05 22.7 0.3 0.0001 21.8 0.2 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PemK PF02452.12 gi|410669458|ref|YP_006921829.1| - 0.0034 17.5 0.1 0.0035 17.5 0.1 1.0 1 0 0 1 1 1 1 PemK-like protein B-block_TFIIIC PF04182.7 gi|410669461|ref|YP_006921832.1| - 1.3e-05 24.9 0.0 1.7e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.17 gi|410669461|ref|YP_006921832.1| - 0.002 17.8 0.0 0.003 17.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|410669461|ref|YP_006921832.1| - 0.012 15.9 0.0 0.017 15.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|410669461|ref|YP_006921832.1| - 0.037 13.7 0.0 0.051 13.2 0.0 1.2 1 0 0 1 1 1 0 MarR family LSM PF01423.17 gi|410669462|ref|YP_006921833.1| - 2.6e-13 49.3 0.1 2.7e-13 49.2 0.1 1.0 1 0 0 1 1 1 1 LSM domain DUF3467 PF11950.3 gi|410669463|ref|YP_006921834.1| - 2.4e-16 59.5 0.2 3.9e-16 58.8 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3467) DEAD PF00270.24 gi|410669464|ref|YP_006921835.1| - 5.8e-26 90.9 0.1 1.4e-25 89.7 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|410669464|ref|YP_006921835.1| - 2.1e-13 49.9 0.0 8.6e-13 47.9 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|410669464|ref|YP_006921835.1| - 1.6e-05 24.8 0.0 4.1e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_34 PF13872.1 gi|410669464|ref|YP_006921835.1| - 0.023 13.4 0.0 0.04 12.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 KaiC PF06745.8 gi|410669465|ref|YP_006921836.1| - 1.9e-07 30.4 0.0 3.1e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.6 gi|410669465|ref|YP_006921836.1| - 0.0057 15.5 0.0 0.0089 14.9 0.0 1.3 1 0 0 1 1 1 1 PAXNEB protein PNP_UDP_1 PF01048.15 gi|410669466|ref|YP_006921837.1| - 1.7e-41 141.7 0.3 1.9e-41 141.5 0.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF373 PF04123.8 gi|410669467|ref|YP_006921838.1| - 2.6e-107 358.8 10.2 3e-107 358.5 7.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF3995 PF13160.1 gi|410669467|ref|YP_006921838.1| - 1.5 8.9 9.3 2.7 8.0 3.9 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3995) MAF_flag10 PF01973.13 gi|410669468|ref|YP_006921839.1| - 9.3e-35 119.6 0.2 1.1e-34 119.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|410669468|ref|YP_006921839.1| - 0.0029 17.2 0.2 0.031 13.8 0.0 2.1 2 0 0 2 2 2 1 Thiamin pyrophosphokinase, catalytic domain tRNA-synt_1 PF00133.17 gi|410669469|ref|YP_006921840.1| - 4.1e-210 698.8 1.0 5.7e-210 698.3 0.7 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|410669469|ref|YP_006921840.1| - 1.3e-35 122.3 0.4 3e-35 121.2 0.3 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|410669469|ref|YP_006921840.1| - 4.3e-29 101.3 2.7 2e-12 46.5 0.0 3.9 4 0 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|410669469|ref|YP_006921840.1| - 1.1e-07 31.3 0.0 1.8e-06 27.2 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|410669469|ref|YP_006921840.1| - 0.0017 17.1 0.0 0.0053 15.4 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.1 gi|410669469|ref|YP_006921840.1| - 0.0092 15.2 0.0 0.029 13.6 0.0 1.9 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 ARGLU PF15346.1 gi|410669469|ref|YP_006921840.1| - 0.14 11.9 0.7 0.33 10.7 0.5 1.6 1 0 0 1 1 1 0 Arginine and glutamate-rich 1 Beta-lactamase PF00144.19 gi|410669470|ref|YP_006921841.1| - 2.1e-37 128.9 0.0 2.7e-37 128.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase DUF2769 PF10967.3 gi|410669471|ref|YP_006921842.1| - 2e-09 37.5 18.6 5.8e-08 32.9 12.5 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF2769) zf-RING_6 PF14835.1 gi|410669471|ref|YP_006921842.1| - 1.2 8.9 4.8 0.44 10.3 0.9 1.9 2 0 0 2 2 2 0 zf-RING of BARD1-type protein Methylase_S PF01420.14 gi|410669472|ref|YP_006921843.1| - 4.7e-19 68.9 0.0 5.5e-19 68.7 0.0 1.1 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain zf-ribbon_3 PF13248.1 gi|410669473|ref|YP_006921844.1| - 1.2e-05 24.3 0.9 2.9e-05 23.1 0.6 1.7 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|410669473|ref|YP_006921844.1| - 8.7e-05 21.8 2.3 0.00017 20.9 1.6 1.6 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|410669473|ref|YP_006921844.1| - 0.0001 22.0 0.8 0.00019 21.1 0.5 1.4 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|410669473|ref|YP_006921844.1| - 0.016 14.9 5.7 0.067 12.9 4.1 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|410669473|ref|YP_006921844.1| - 0.04 13.4 1.5 0.12 11.9 1.1 1.7 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DUF4428 PF14471.1 gi|410669473|ref|YP_006921844.1| - 0.065 12.9 0.5 0.17 11.6 0.3 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) TF_Zn_Ribbon PF08271.7 gi|410669473|ref|YP_006921844.1| - 0.067 12.5 0.9 0.16 11.3 0.6 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|410669473|ref|YP_006921844.1| - 0.088 12.6 1.9 0.13 12.1 0.1 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-LITAF-like PF10601.4 gi|410669473|ref|YP_006921844.1| - 0.14 12.0 1.9 1 9.2 0.1 2.2 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|410669473|ref|YP_006921844.1| - 0.14 11.9 0.6 0.22 11.3 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbons DUF329 PF03884.9 gi|410669473|ref|YP_006921844.1| - 0.19 11.3 0.9 0.36 10.4 0.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF329) Prok-RING_1 PF14446.1 gi|410669473|ref|YP_006921844.1| - 0.21 11.3 2.3 0.26 11.0 0.5 1.9 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|410669473|ref|YP_006921844.1| - 0.36 10.5 3.9 9.4 6.0 2.7 2.3 1 1 1 2 2 2 0 Nudix N-terminal DNA_ligase_ZBD PF03119.11 gi|410669473|ref|YP_006921844.1| - 0.61 9.8 0.1 0.61 9.8 0.1 2.1 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-Mss51 PF13824.1 gi|410669473|ref|YP_006921844.1| - 0.65 9.8 2.3 0.8 9.6 0.9 1.7 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF3043 PF11241.3 gi|410669474|ref|YP_006921845.1| - 0.08 12.5 0.2 0.093 12.3 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) TM2 PF05154.11 gi|410669474|ref|YP_006921845.1| - 0.73 10.0 7.7 1.4 9.2 4.2 1.9 1 1 1 2 2 2 0 TM2 domain E1-E2_ATPase PF00122.15 gi|410669477|ref|YP_006921848.1| - 7.3e-71 237.8 5.9 7.3e-71 237.8 4.1 2.9 3 1 0 3 3 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|410669477|ref|YP_006921848.1| - 3.8e-39 134.0 11.4 3.8e-39 134.0 7.9 2.2 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|410669477|ref|YP_006921848.1| - 6.2e-38 131.3 0.0 1.7e-37 129.8 0.0 1.8 2 1 0 2 2 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|410669477|ref|YP_006921848.1| - 1.1e-24 86.2 0.0 3.2e-24 84.7 0.0 1.9 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|410669477|ref|YP_006921848.1| - 5.5e-21 75.6 0.0 2.7e-20 73.3 0.0 2.2 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|410669477|ref|YP_006921848.1| - 3.3e-15 55.2 0.2 1.7e-14 52.9 0.1 2.4 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|410669477|ref|YP_006921848.1| - 1.7e-07 31.0 0.2 0.015 14.8 0.0 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|410669477|ref|YP_006921848.1| - 0.034 14.3 0.0 0.13 12.5 0.0 2.0 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|410669477|ref|YP_006921848.1| - 0.034 14.0 0.0 0.87 9.5 0.0 3.0 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase Kinase-like PF14531.1 gi|410669477|ref|YP_006921848.1| - 0.035 13.0 0.3 6.9 5.5 0.0 2.7 3 0 0 3 3 3 0 Kinase-like Phage_mat-A PF03863.8 gi|410669477|ref|YP_006921848.1| - 0.15 11.0 0.0 0.25 10.3 0.0 1.3 1 0 0 1 1 1 0 Phage maturation protein DUF21 PF01595.15 gi|410669478|ref|YP_006921849.1| - 3e-51 173.2 8.6 4.7e-51 172.6 5.9 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|410669478|ref|YP_006921849.1| - 1.6e-22 79.0 0.5 4.3e-22 77.6 0.1 1.9 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|410669478|ref|YP_006921849.1| - 1.4e-16 59.9 0.6 1e-10 41.2 0.1 2.8 2 0 0 2 2 2 2 CBS domain IMPDH PF00478.20 gi|410669478|ref|YP_006921849.1| - 0.15 10.9 0.1 0.21 10.4 0.1 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain DDE_Tnp_IS1 PF03400.8 gi|410669481|ref|YP_006921852.1| - 2.9e-08 33.8 0.1 3.2e-08 33.7 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase CxxCxxCC PF03692.10 gi|410669482|ref|YP_006921853.1| - 2.4e-07 31.1 5.0 5.1e-07 30.0 3.5 1.6 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain CTP_transf_1 PF01148.15 gi|410669483|ref|YP_006921854.1| - 1.3e-11 44.6 18.2 4.9e-10 39.4 6.0 2.8 1 1 1 2 2 2 2 Cytidylyltransferase family DUF3084 PF11283.3 gi|410669483|ref|YP_006921854.1| - 2 8.3 6.3 0.12 12.1 0.4 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3084) DUF4177 PF13783.1 gi|410669484|ref|YP_006921855.1| - 2.9e-11 42.8 0.3 3.3e-11 42.6 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) Copper-bind PF00127.15 gi|410669485|ref|YP_006921856.1| - 2.1e-08 34.3 1.7 3e-06 27.3 1.2 2.3 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|410669485|ref|YP_006921856.1| - 1.7e-07 31.0 0.0 4.2e-07 29.7 0.0 1.6 2 0 0 2 2 2 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|410669486|ref|YP_006921857.1| - 5.5e-09 36.1 0.3 3.8e-08 33.4 0.2 1.9 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|410669486|ref|YP_006921857.1| - 2.2e-06 27.4 0.0 2.6e-06 27.2 0.0 1.0 1 0 0 1 1 1 1 Cupredoxin-like domain PKD PF00801.15 gi|410669486|ref|YP_006921857.1| - 0.21 11.3 3.0 11 5.8 2.0 2.2 1 1 0 1 1 1 0 PKD domain adh_short PF00106.20 gi|410669487|ref|YP_006921858.1| - 8.8e-38 129.8 0.4 1.1e-37 129.5 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|410669487|ref|YP_006921858.1| - 3.6e-21 76.0 0.5 2.6e-20 73.2 0.3 1.9 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|410669487|ref|YP_006921858.1| - 2.1e-15 56.8 0.5 2.9e-15 56.3 0.3 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|410669487|ref|YP_006921858.1| - 2.7e-06 26.9 0.1 5.4e-06 26.0 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Shikimate_DH PF01488.15 gi|410669487|ref|YP_006921858.1| - 0.0012 18.9 0.3 0.0033 17.5 0.1 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|410669487|ref|YP_006921858.1| - 0.0027 18.0 0.5 0.0052 17.1 0.4 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|410669487|ref|YP_006921858.1| - 0.022 13.9 0.8 0.029 13.5 0.1 1.6 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Eno-Rase_NADH_b PF12242.3 gi|410669487|ref|YP_006921858.1| - 0.028 14.2 0.2 0.066 13.0 0.1 1.7 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NAD_binding_10 PF13460.1 gi|410669487|ref|YP_006921858.1| - 0.037 14.0 0.7 0.052 13.5 0.1 1.6 2 0 0 2 2 2 0 NADH(P)-binding 3Beta_HSD PF01073.14 gi|410669487|ref|YP_006921858.1| - 0.065 11.9 0.1 0.092 11.4 0.1 1.3 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family PBP PF01161.15 gi|410669488|ref|YP_006921859.1| - 1.2e-27 96.5 0.0 1.4e-27 96.3 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Abhydrolase_6 PF12697.2 gi|410669489|ref|YP_006921860.1| - 3.4e-44 151.4 0.2 3.8e-44 151.2 0.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|410669489|ref|YP_006921860.1| - 3.7e-20 72.1 0.0 2.5e-19 69.4 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|410669489|ref|YP_006921860.1| - 7.4e-20 71.4 0.0 4.2e-11 42.8 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|410669489|ref|YP_006921860.1| - 3e-06 27.0 0.0 8.9e-06 25.5 0.0 1.7 2 0 0 2 2 2 1 TAP-like protein Ndr PF03096.9 gi|410669489|ref|YP_006921860.1| - 0.0044 15.5 0.0 0.0058 15.1 0.0 1.1 1 0 0 1 1 1 1 Ndr family Hydrolase_4 PF12146.3 gi|410669489|ref|YP_006921860.1| - 0.01 15.6 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 0 Putative lysophospholipase FSH1 PF03959.8 gi|410669489|ref|YP_006921860.1| - 0.11 11.9 0.0 1.1 8.6 0.0 2.0 2 0 0 2 2 2 0 Serine hydrolase (FSH1) SCFA_trans PF02667.9 gi|410669489|ref|YP_006921860.1| - 0.15 10.7 0.0 0.22 10.2 0.0 1.1 1 0 0 1 1 1 0 Short chain fatty acid transporter B12-binding_2 PF02607.12 gi|410669491|ref|YP_006921862.1| - 9.4e-10 38.3 0.2 1e-09 38.2 0.1 1.1 1 0 0 1 1 1 1 B12 binding domain CoA_binding PF02629.14 gi|410669491|ref|YP_006921862.1| - 0.13 12.8 0.3 0.14 12.6 0.2 1.1 1 0 0 1 1 1 0 CoA binding domain DUF2683 PF10884.3 gi|410669493|ref|YP_006921864.1| - 0.0013 18.5 0.2 0.0015 18.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2683) Plasmid_stabil PF05016.9 gi|410669494|ref|YP_006921865.1| - 2.3e-14 53.5 0.0 2.6e-14 53.3 0.0 1.0 1 0 0 1 1 1 1 Plasmid stabilisation system protein DDE_Tnp_1_2 PF13586.1 gi|410669496|ref|YP_006921867.1| - 7.1e-22 77.4 2.7 8e-21 74.0 0.2 2.0 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|410669496|ref|YP_006921867.1| - 6.9e-12 45.3 0.5 1e-11 44.7 0.4 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|410669496|ref|YP_006921867.1| - 0.0065 16.0 0.0 0.0077 15.8 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.1 gi|410669497|ref|YP_006921868.1| - 3.3e-29 100.5 0.7 4.2e-29 100.2 0.5 1.1 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) TetR_N PF00440.18 gi|410669500|ref|YP_006921871.1| - 4.4e-17 61.4 0.2 9.4e-17 60.3 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family WHG PF13305.1 gi|410669500|ref|YP_006921871.1| - 0.02 15.4 0.3 0.041 14.4 0.0 1.8 2 0 0 2 2 2 0 WHG domain Fer4 PF00037.22 gi|410669501|ref|YP_006921872.1| - 5.1e-11 41.6 16.8 9.6e-06 24.9 3.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|410669501|ref|YP_006921872.1| - 4.8e-07 30.4 14.5 0.00011 22.8 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|410669501|ref|YP_006921872.1| - 6.2e-07 29.5 11.0 0.0038 17.4 1.4 2.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410669501|ref|YP_006921872.1| - 2.8e-06 27.0 11.3 0.0057 16.4 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|410669501|ref|YP_006921872.1| - 1e-05 25.4 10.0 0.0024 17.8 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410669501|ref|YP_006921872.1| - 2e-05 24.3 33.1 0.00035 20.2 12.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410669501|ref|YP_006921872.1| - 0.0001 22.6 19.6 0.00011 22.5 12.0 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Flavodoxin_1 PF00258.20 gi|410669501|ref|YP_006921872.1| - 0.00016 21.6 0.0 0.00022 21.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin Fer4_6 PF12837.2 gi|410669501|ref|YP_006921872.1| - 0.00042 20.0 16.7 0.032 14.1 2.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Flavodoxin_5 PF12724.2 gi|410669501|ref|YP_006921872.1| - 0.00077 19.4 0.0 0.0011 18.9 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.10 gi|410669501|ref|YP_006921872.1| - 0.0017 17.9 0.0 0.0027 17.2 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.2 gi|410669501|ref|YP_006921872.1| - 0.0043 16.5 0.0 0.052 12.9 0.0 2.1 2 0 0 2 2 2 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|410669501|ref|YP_006921872.1| - 0.0061 15.9 0.0 1.2 8.5 0.0 2.3 1 1 1 2 2 2 1 Flavodoxin Fer4_2 PF12797.2 gi|410669501|ref|YP_006921872.1| - 0.0074 16.1 6.2 0.0074 16.1 4.3 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Flavodoxin_2 PF02525.12 gi|410669501|ref|YP_006921872.1| - 0.025 14.0 0.0 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin-like fold Fer4_3 PF12798.2 gi|410669501|ref|YP_006921872.1| - 0.12 13.0 23.1 0.72 10.5 4.4 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|410669501|ref|YP_006921872.1| - 0.2 12.2 11.9 0.62 10.6 1.6 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|410669501|ref|YP_006921872.1| - 0.68 10.4 20.3 2.1 8.9 5.5 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|410669501|ref|YP_006921872.1| - 3.8 7.9 18.0 4.4 7.7 1.9 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|410669501|ref|YP_006921872.1| - 9.7 6.6 24.6 0.19 12.0 2.7 2.6 2 1 3 5 5 4 0 4Fe-4S dicluster domain Peptidase_M18 PF02127.10 gi|410669502|ref|YP_006921873.1| - 5.5e-123 410.6 0.0 6.2e-123 410.4 0.0 1.0 1 0 0 1 1 1 1 Aminopeptidase I zinc metalloprotease (M18) Acetyltransf_1 PF00583.19 gi|410669503|ref|YP_006921874.1| - 2e-11 43.7 0.0 3.9e-11 42.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|410669503|ref|YP_006921874.1| - 5.3e-11 42.4 0.0 7.8e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|410669503|ref|YP_006921874.1| - 7.6e-09 35.6 0.1 1.4e-08 34.7 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|410669503|ref|YP_006921874.1| - 0.00011 22.3 0.0 0.00018 21.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain MOZ_SAS PF01853.13 gi|410669503|ref|YP_006921874.1| - 0.0012 18.0 0.0 0.0018 17.5 0.0 1.3 1 0 0 1 1 1 1 MOZ/SAS family Acetyltransf_CG PF14542.1 gi|410669503|ref|YP_006921874.1| - 0.023 14.5 0.0 0.041 13.7 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Peptidase_M28 PF04389.12 gi|410669504|ref|YP_006921875.1| - 6.9e-19 68.2 0.0 9.9e-19 67.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M42 PF05343.9 gi|410669504|ref|YP_006921875.1| - 0.0031 16.3 0.1 0.17 10.5 0.0 2.2 1 1 1 2 2 2 2 M42 glutamyl aminopeptidase Nicastrin PF05450.10 gi|410669504|ref|YP_006921875.1| - 0.028 13.6 0.0 0.073 12.2 0.0 1.8 2 0 0 2 2 2 0 Nicastrin Peptidase_M20 PF01546.23 gi|410669504|ref|YP_006921875.1| - 0.038 13.5 0.0 0.055 12.9 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M20/M25/M40 DUF1724 PF08350.5 gi|410669506|ref|YP_006921877.1| - 8.1e-12 44.4 0.0 8.4e-12 44.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) 3-dmu-9_3-mt PF06983.8 gi|410669510|ref|YP_006921881.1| - 5.9e-14 52.3 0.0 7e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 3-demethylubiquinone-9 3-methyltransferase Glyoxalase PF00903.20 gi|410669510|ref|YP_006921881.1| - 2.3e-05 24.3 0.0 5.6e-05 23.1 0.0 1.6 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|410669510|ref|YP_006921881.1| - 0.04 14.5 0.0 0.058 14.0 0.0 1.2 1 0 0 1 1 1 0 Glyoxalase-like domain DUF1638 PF07796.6 gi|410669511|ref|YP_006921882.1| - 2.7e-34 118.2 0.0 3.9e-34 117.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) Abhydrolase_6 PF12697.2 gi|410669512|ref|YP_006921883.1| - 4.4e-23 82.3 0.0 5.5e-23 82.0 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|410669512|ref|YP_006921883.1| - 8.4e-14 51.6 0.0 1.8e-06 27.6 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|410669512|ref|YP_006921883.1| - 1e-09 38.2 0.0 1.8e-09 37.5 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.9 gi|410669512|ref|YP_006921883.1| - 0.00023 19.7 0.0 0.00044 18.8 0.0 1.6 1 1 0 1 1 1 1 Ndr family DUF915 PF06028.6 gi|410669512|ref|YP_006921883.1| - 0.0012 17.9 0.0 2.4 7.1 0.0 3.0 2 1 1 3 3 3 2 Alpha/beta hydrolase of unknown function (DUF915) Radical_SAM PF04055.16 gi|410669513|ref|YP_006921884.1| - 5.4e-17 62.4 0.2 2.2e-16 60.4 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|410669513|ref|YP_006921884.1| - 1.7e-10 40.9 0.2 4.8e-10 39.5 0.1 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|410669513|ref|YP_006921884.1| - 6.6e-09 36.0 1.0 1.8e-08 34.6 0.5 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|410669513|ref|YP_006921884.1| - 3.1e-05 24.2 1.2 0.004 17.4 0.0 3.5 3 1 1 4 4 4 1 Iron-sulfur cluster-binding domain PPR PF01535.15 gi|410669513|ref|YP_006921884.1| - 0.24 11.4 1.2 3.4 7.8 0.2 2.9 2 0 0 2 2 2 0 PPR repeat CarboxypepD_reg PF13620.1 gi|410669514|ref|YP_006921885.1| - 0.091 12.8 0.1 0.34 10.9 0.0 1.9 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain NnrU PF07298.6 gi|410669515|ref|YP_006921886.1| - 6.9e-06 25.5 4.9 1.1e-05 24.9 3.4 1.3 1 1 0 1 1 1 1 NnrU protein PEMT PF04191.8 gi|410669515|ref|YP_006921886.1| - 0.0038 17.2 1.2 0.0038 17.2 0.9 2.4 2 1 0 2 2 2 1 Phospholipid methyltransferase Ala_racemase_N PF01168.15 gi|410669516|ref|YP_006921887.1| - 4.1e-38 131.1 0.0 5.9e-38 130.5 0.0 1.2 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Lon_C PF05362.8 gi|410669517|ref|YP_006921888.1| - 1.8e-88 295.2 1.0 3.9e-88 294.1 0.7 1.6 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA PF00004.24 gi|410669517|ref|YP_006921888.1| - 1e-22 80.7 0.1 5.5e-22 78.3 0.0 2.3 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) ChlI PF13541.1 gi|410669517|ref|YP_006921888.1| - 1.1e-11 44.2 0.0 2.2e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase LON PF02190.11 gi|410669517|ref|YP_006921888.1| - 2.2e-10 40.5 1.3 2.5e-10 40.4 0.1 1.7 2 0 0 2 2 1 1 ATP-dependent protease La (LON) domain AAA_5 PF07728.9 gi|410669517|ref|YP_006921888.1| - 1.9e-08 34.1 0.0 2e-07 30.8 0.0 2.5 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|410669517|ref|YP_006921888.1| - 7e-07 30.0 0.5 7.7e-05 23.4 0.0 3.6 4 0 0 4 4 2 1 AAA domain AAA_22 PF13401.1 gi|410669517|ref|YP_006921888.1| - 9e-06 25.8 0.4 0.00068 19.7 0.0 3.3 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|410669517|ref|YP_006921888.1| - 1.8e-05 24.7 0.0 8.3e-05 22.6 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain TIP49 PF06068.8 gi|410669517|ref|YP_006921888.1| - 0.00011 21.0 0.4 0.021 13.5 0.0 2.6 2 0 0 2 2 2 1 TIP49 C-terminus AAA_2 PF07724.9 gi|410669517|ref|YP_006921888.1| - 0.00013 21.9 0.0 0.00046 20.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|410669517|ref|YP_006921888.1| - 0.00019 20.5 0.2 0.0016 17.4 0.0 2.4 3 0 0 3 3 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|410669517|ref|YP_006921888.1| - 0.00021 21.6 5.1 0.0044 17.3 0.0 3.8 3 1 0 3 3 3 1 AAA domain IstB_IS21 PF01695.12 gi|410669517|ref|YP_006921888.1| - 0.00026 20.4 0.0 0.00094 18.6 0.0 2.0 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|410669517|ref|YP_006921888.1| - 0.00043 20.1 0.1 0.0039 17.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain Birna_VP4 PF01768.11 gi|410669517|ref|YP_006921888.1| - 0.00062 18.9 0.2 0.0013 17.8 0.2 1.5 1 0 0 1 1 1 1 Birnavirus VP4 protein AAA_19 PF13245.1 gi|410669517|ref|YP_006921888.1| - 0.0038 16.9 0.8 0.014 15.1 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain UPF0079 PF02367.12 gi|410669517|ref|YP_006921888.1| - 0.004 16.7 0.5 0.023 14.3 0.0 2.3 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|410669517|ref|YP_006921888.1| - 0.0058 16.3 0.4 0.21 11.2 0.0 3.1 2 1 1 3 3 3 1 NTPase RNA_helicase PF00910.17 gi|410669517|ref|YP_006921888.1| - 0.0096 16.0 0.0 0.028 14.5 0.0 1.8 2 0 0 2 2 1 1 RNA helicase AAA_PrkA PF08298.6 gi|410669517|ref|YP_006921888.1| - 0.011 14.4 0.0 0.019 13.6 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain Viral_helicase1 PF01443.13 gi|410669517|ref|YP_006921888.1| - 0.013 15.0 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_28 PF13521.1 gi|410669517|ref|YP_006921888.1| - 0.015 15.2 0.1 0.057 13.3 0.0 2.0 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.6 gi|410669517|ref|YP_006921888.1| - 0.017 14.6 0.0 0.097 12.2 0.0 2.3 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|410669517|ref|YP_006921888.1| - 0.019 14.8 0.0 0.053 13.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|410669517|ref|YP_006921888.1| - 0.029 14.0 0.0 0.35 10.5 0.0 2.4 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.1 gi|410669517|ref|YP_006921888.1| - 0.035 13.4 0.2 0.099 12.0 0.2 1.7 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|410669517|ref|YP_006921888.1| - 0.037 13.7 0.3 0.85 9.3 0.0 2.7 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B Parvo_NS1 PF01057.12 gi|410669517|ref|YP_006921888.1| - 0.045 12.6 0.0 0.14 11.0 0.0 1.7 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 Zeta_toxin PF06414.7 gi|410669517|ref|YP_006921888.1| - 0.048 12.7 0.1 0.26 10.3 0.1 2.1 2 0 0 2 2 2 0 Zeta toxin DUF815 PF05673.8 gi|410669517|ref|YP_006921888.1| - 0.048 12.5 0.5 0.32 9.8 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF815) AAA_30 PF13604.1 gi|410669517|ref|YP_006921888.1| - 0.078 12.5 0.2 0.18 11.3 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_24 PF13479.1 gi|410669517|ref|YP_006921888.1| - 0.092 12.3 0.5 0.2 11.1 0.3 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|410669517|ref|YP_006921888.1| - 0.11 11.6 0.8 0.68 9.0 0.0 2.4 3 0 0 3 3 2 0 Magnesium chelatase, subunit ChlI AAA_11 PF13086.1 gi|410669517|ref|YP_006921888.1| - 0.12 11.9 0.7 0.82 9.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|410669517|ref|YP_006921888.1| - 0.98 9.7 11.1 0.18 12.1 0.1 2.7 1 1 0 2 2 2 0 AAA domain MarR PF01047.17 gi|410669518|ref|YP_006921889.1| - 6.5e-10 38.5 0.0 1.3e-09 37.6 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|410669518|ref|YP_006921889.1| - 1.2e-09 37.7 0.0 2e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|410669518|ref|YP_006921889.1| - 9e-06 25.9 0.0 1.6e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|410669518|ref|YP_006921889.1| - 0.00074 19.4 0.0 0.0014 18.5 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|410669518|ref|YP_006921889.1| - 0.0015 18.2 0.0 0.0024 17.5 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB KIP1 PF07765.7 gi|410669518|ref|YP_006921889.1| - 0.0024 17.6 0.7 0.17 11.7 0.0 2.3 2 0 0 2 2 2 1 KIP1-like protein HTH_24 PF13412.1 gi|410669518|ref|YP_006921889.1| - 0.0046 16.3 0.0 0.012 14.9 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.11 gi|410669518|ref|YP_006921889.1| - 0.012 15.6 0.8 0.077 13.0 0.6 2.0 1 1 0 1 1 1 0 Penicillinase repressor FeoC PF09012.5 gi|410669518|ref|YP_006921889.1| - 0.043 13.5 0.0 0.15 11.7 0.0 1.8 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_5 PF01022.15 gi|410669518|ref|YP_006921889.1| - 0.057 13.1 0.0 5.3 6.7 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF1724 PF08350.5 gi|410669519|ref|YP_006921890.1| - 2.6e-13 49.3 0.0 6.1e-13 48.0 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) MFS_1 PF07690.11 gi|410669520|ref|YP_006921891.1| - 7.5e-68 228.8 82.4 8.7e-54 182.5 37.2 2.7 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|410669520|ref|YP_006921891.1| - 4.8e-10 38.6 14.2 4.8e-10 38.6 9.9 2.5 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.8 gi|410669520|ref|YP_006921891.1| - 3.5e-08 32.0 6.2 3.5e-08 32.0 4.3 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_2 PF13347.1 gi|410669520|ref|YP_006921891.1| - 1.4e-07 30.2 47.5 0.00035 19.0 19.3 3.1 1 1 2 3 3 3 2 MFS/sugar transport protein PUCC PF03209.10 gi|410669520|ref|YP_006921891.1| - 3.7e-06 25.9 6.9 3.7e-06 25.9 4.8 2.3 2 0 0 2 2 2 1 PUCC protein MFS_1_like PF12832.2 gi|410669520|ref|YP_006921891.1| - 4.6e-06 26.3 2.7 5.1e-05 22.9 0.2 3.0 2 0 0 2 2 2 1 MFS_1 like family DUF1724 PF08350.5 gi|410669521|ref|YP_006921892.1| - 6.7e-17 60.7 0.3 1.2e-16 59.9 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_45 PF14947.1 gi|410669521|ref|YP_006921892.1| - 0.05 13.4 0.1 0.12 12.1 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix MarR PF01047.17 gi|410669521|ref|YP_006921892.1| - 0.081 12.6 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.2 gi|410669521|ref|YP_006921892.1| - 0.089 12.6 0.1 0.15 11.8 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|410669521|ref|YP_006921892.1| - 0.11 12.1 0.3 0.2 11.3 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2227 PF09988.4 gi|410669522|ref|YP_006921893.1| - 1e-27 96.8 6.5 5e-26 91.3 1.8 2.1 1 1 1 2 2 2 2 Uncharacterized metal-binding protein (DUF2227) DUF457 PF04307.9 gi|410669522|ref|YP_006921893.1| - 1.8e-06 27.3 1.9 2.6e-06 26.8 1.3 1.3 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) ThiW PF09512.5 gi|410669522|ref|YP_006921893.1| - 0.011 15.5 0.5 0.59 9.9 0.0 2.1 2 0 0 2 2 2 0 Thiamine-precursor transporter protein (ThiW) DUF3397 PF11877.3 gi|410669522|ref|YP_006921893.1| - 0.83 9.6 5.5 0.6 10.1 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3397) AzlC PF03591.9 gi|410669526|ref|YP_006921897.1| - 2.9e-37 127.7 9.6 2.9e-37 127.7 6.7 1.8 2 0 0 2 2 2 1 AzlC protein DUF4491 PF14898.1 gi|410669526|ref|YP_006921897.1| - 9.4 6.4 7.9 0.76 9.9 1.2 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4491) Phage_integrase PF00589.17 gi|410669527|ref|YP_006921898.1| - 4.8e-10 39.3 0.1 1.4e-09 37.8 0.0 1.8 2 0 0 2 2 2 1 Phage integrase family DUF1640 PF07798.6 gi|410669527|ref|YP_006921898.1| - 0.0092 16.0 1.4 0.019 15.0 1.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1640) Phage_int_SAM_4 PF13495.1 gi|410669527|ref|YP_006921898.1| - 0.069 13.4 0.0 0.67 10.3 0.0 2.4 1 1 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain PspB PF06667.7 gi|410669530|ref|YP_006921901.1| - 1.1 9.2 3.6 1.5 8.7 2.5 1.2 1 0 0 1 1 1 0 Phage shock protein B HTH_29 PF13551.1 gi|410669531|ref|YP_006921902.1| - 1.8e-16 60.2 0.0 2.8e-16 59.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410669531|ref|YP_006921902.1| - 1e-10 42.2 0.3 2.2e-10 41.2 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|410669531|ref|YP_006921902.1| - 6e-09 35.3 0.4 1.2e-08 34.3 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|410669531|ref|YP_006921902.1| - 1.2e-06 27.9 0.1 4.4e-06 26.1 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|410669531|ref|YP_006921902.1| - 7.6e-06 25.8 0.0 1.8e-05 24.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_21 PF13276.1 gi|410669531|ref|YP_006921902.1| - 0.031 14.2 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 HTH-like domain DDE_3 PF13358.1 gi|410669532|ref|YP_006921903.1| - 2.8e-23 82.2 0.1 3.9e-23 81.8 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|410669532|ref|YP_006921903.1| - 1.2e-09 38.2 0.0 2.1e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|410669532|ref|YP_006921903.1| - 9.1e-09 34.7 0.2 1.1e-08 34.5 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|410669532|ref|YP_006921903.1| - 0.009 14.7 0.0 0.01 14.6 0.0 1.2 1 0 0 1 1 1 1 Rhodopirellula transposase DDE domain DUF3800 PF12686.2 gi|410669532|ref|YP_006921903.1| - 0.047 13.3 0.0 0.057 13.0 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) Ribosomal_S2 PF00318.15 gi|410669532|ref|YP_006921903.1| - 0.05 12.8 3.3 0.58 9.3 2.3 2.0 1 1 0 1 1 1 0 Ribosomal protein S2 PhnA_Zn_Ribbon PF08274.7 gi|410669533|ref|YP_006921904.1| - 0.11 12.3 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 PhnA Zinc-Ribbon AntA PF08346.7 gi|410669533|ref|YP_006921904.1| - 0.12 12.6 0.1 0.12 12.6 0.1 1.1 1 0 0 1 1 1 0 AntA/AntB antirepressor Ribosomal_S25 PF03297.10 gi|410669533|ref|YP_006921904.1| - 0.13 12.2 0.0 0.13 12.2 0.0 1.0 1 0 0 1 1 1 0 S25 ribosomal protein DUF2848 PF11010.3 gi|410669534|ref|YP_006921905.1| - 0.077 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2848) Gram_pos_anchor PF00746.16 gi|410669534|ref|YP_006921905.1| - 0.077 12.8 0.0 0.22 11.3 0.0 1.8 1 0 0 1 1 1 0 Gram positive anchor RuBisCO_large PF00016.15 gi|410669536|ref|YP_006921907.1| - 4.3e-78 262.2 0.2 2e-59 200.9 0.0 2.1 1 1 1 2 2 2 2 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|410669536|ref|YP_006921907.1| - 6.3e-23 80.8 0.0 1.4e-22 79.6 0.0 1.6 1 1 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain DUF1724 PF08350.5 gi|410669538|ref|YP_006921909.1| - 1.1e-13 50.4 0.7 2.8e-13 49.1 0.5 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) MarR PF01047.17 gi|410669538|ref|YP_006921909.1| - 0.013 15.1 0.2 0.04 13.6 0.1 1.8 1 0 0 1 1 1 0 MarR family LIP PF03583.9 gi|410669538|ref|YP_006921909.1| - 0.15 11.2 0.0 0.24 10.5 0.0 1.3 1 0 0 1 1 1 0 Secretory lipase Rhodanese PF00581.15 gi|410669539|ref|YP_006921910.1| - 9.8e-20 71.0 0.1 7.4e-17 61.7 0.1 2.6 2 1 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.22 gi|410669539|ref|YP_006921910.1| - 7.2e-14 51.8 2.9 1.1e-13 51.2 0.7 2.1 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Orn_Arg_deC_N PF02784.11 gi|410669540|ref|YP_006921911.1| - 6.7e-51 172.8 0.0 8.8e-51 172.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|410669540|ref|YP_006921911.1| - 4.4e-19 68.2 0.0 7.3e-19 67.6 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DUF91 PF01939.11 gi|410669541|ref|YP_006921912.1| - 2.8e-06 26.6 0.7 6.1e-06 25.5 0.1 1.6 1 1 0 2 2 2 1 Protein of unknown function DUF91 mTERF PF02536.9 gi|410669541|ref|YP_006921912.1| - 0.043 12.3 0.0 0.053 12.0 0.0 1.3 1 0 0 1 1 1 0 mTERF HATPase_c PF02518.21 gi|410669541|ref|YP_006921912.1| - 0.1 12.3 0.1 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PALP PF00291.20 gi|410669542|ref|YP_006921913.1| - 1.9e-26 93.0 0.0 3.1e-26 92.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.1 gi|410669542|ref|YP_006921913.1| - 1.8e-19 69.5 0.1 7.9e-19 67.4 0.0 2.1 2 0 0 2 2 2 1 Threonine synthase N terminus EutB PF06751.6 gi|410669542|ref|YP_006921913.1| - 0.074 11.3 0.1 0.11 10.7 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine ammonia lyase large subunit (EutB) LysE PF01810.13 gi|410669543|ref|YP_006921914.1| - 6.2e-21 74.5 16.8 7.6e-21 74.2 11.6 1.1 1 0 0 1 1 1 1 LysE type translocator SVM_signal PF12113.3 gi|410669543|ref|YP_006921914.1| - 0.042 13.6 2.3 0.042 13.6 1.6 2.3 2 0 0 2 2 2 0 SVM protein signal sequence PEMT PF04191.8 gi|410669543|ref|YP_006921914.1| - 8.4 6.5 14.7 0.093 12.8 2.6 2.8 3 0 0 3 3 3 0 Phospholipid methyltransferase HisG PF01634.13 gi|410669544|ref|YP_006921915.1| - 5.7e-43 146.3 0.0 8.9e-43 145.6 0.0 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|410669544|ref|YP_006921915.1| - 6.7e-27 93.2 0.1 1.6e-26 92.0 0.1 1.7 1 0 0 1 1 1 1 HisG, C-terminal domain Phosphonate-bd PF12974.2 gi|410669544|ref|YP_006921915.1| - 0.12 11.7 0.1 0.27 10.5 0.1 1.8 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein SDF PF00375.13 gi|410669545|ref|YP_006921916.1| - 3.5e-120 401.3 45.8 4e-120 401.1 31.8 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Ion_trans_2 PF07885.11 gi|410669547|ref|YP_006921918.1| - 8.2e-23 79.9 11.1 1e-22 79.5 7.7 1.1 1 0 0 1 1 1 1 Ion channel Ion_trans PF00520.26 gi|410669547|ref|YP_006921918.1| - 0.0011 18.2 3.2 0.0016 17.7 2.2 1.5 1 1 0 1 1 1 1 Ion transport protein DUF1049 PF06305.6 gi|410669547|ref|YP_006921918.1| - 0.045 13.2 0.2 0.56 9.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) CMD PF02627.15 gi|410669548|ref|YP_006921919.1| - 1.2e-19 69.8 0.3 1.4e-19 69.6 0.2 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family URO-D PF01208.12 gi|410669549|ref|YP_006921920.1| - 1.4e-75 254.3 0.0 7.2e-74 248.7 0.0 2.0 1 1 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Maf PF02545.9 gi|410669550|ref|YP_006921921.1| - 1.6e-52 177.5 0.0 1.8e-52 177.3 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein DUF3382 PF11862.3 gi|410669552|ref|YP_006921923.1| - 0.15 11.9 0.8 0.21 11.5 0.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3382) SNF PF00209.13 gi|410669553|ref|YP_006921924.1| - 5.7e-53 180.1 26.5 7.6e-30 103.8 5.6 2.2 2 1 0 2 2 2 2 Sodium:neurotransmitter symporter family E1-E2_ATPase PF00122.15 gi|410669553|ref|YP_006921924.1| - 1.9 7.4 7.2 0.64 9.0 1.0 2.5 2 0 0 2 2 2 0 E1-E2 ATPase B12-binding_2 PF02607.12 gi|410669554|ref|YP_006921925.1| - 2.8e-15 56.1 0.4 3.4e-15 55.8 0.3 1.1 1 0 0 1 1 1 1 B12 binding domain DUF3853 PF12964.2 gi|410669554|ref|YP_006921925.1| - 0.048 13.4 0.1 0.095 12.5 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3853) Peptidase_U32 PF01136.14 gi|410669556|ref|YP_006921927.1| - 1.7e-96 321.6 0.1 1.4e-74 249.9 0.0 2.3 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|410669556|ref|YP_006921927.1| - 7.1e-28 97.1 0.5 3.1e-27 95.0 0.0 2.4 3 0 0 3 3 3 1 Collagenase Radical_SAM PF04055.16 gi|410669556|ref|YP_006921927.1| - 0.0017 18.5 0.6 4.7 7.3 0.0 3.5 2 1 1 3 3 3 2 Radical SAM superfamily Catalase PF00199.14 gi|410669557|ref|YP_006921928.1| - 6e-171 568.3 0.1 8.4e-171 567.8 0.1 1.1 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.7 gi|410669557|ref|YP_006921928.1| - 3.6e-22 77.9 0.7 4e-21 74.6 0.0 2.8 3 0 0 3 3 3 1 Catalase-related immune-responsive DJ-1_PfpI PF01965.19 gi|410669557|ref|YP_006921928.1| - 6.4e-14 51.6 0.2 3.3e-13 49.3 0.1 2.0 1 1 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|410669557|ref|YP_006921928.1| - 0.03 13.5 0.0 0.055 12.7 0.0 1.3 1 0 0 1 1 1 0 Putative amidotransferase Xan_ur_permease PF00860.15 gi|410669558|ref|YP_006921929.1| - 3.3e-37 127.8 45.1 4.2e-37 127.5 31.2 1.1 1 0 0 1 1 1 1 Permease family NosD PF05048.8 gi|410669559|ref|YP_006921930.1| - 1.9e-49 167.9 110.6 2e-19 69.6 24.9 4.4 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|410669559|ref|YP_006921930.1| - 3.1e-35 121.2 125.6 2.9e-15 56.3 27.6 5.6 2 2 2 5 5 5 4 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|410669559|ref|YP_006921930.1| - 0.0023 18.0 22.6 0.0023 18.0 15.6 5.1 1 1 2 3 3 3 2 Pectate lyase superfamily protein Gram_pos_anchor PF00746.16 gi|410669560|ref|YP_006921931.1| - 0.017 14.9 0.1 0.068 12.9 0.1 1.9 1 1 0 1 1 1 0 Gram positive anchor HATPase_c PF02518.21 gi|410669562|ref|YP_006921933.1| - 7.6e-22 77.1 0.0 1.6e-21 76.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|410669562|ref|YP_006921933.1| - 3.9e-12 46.4 0.0 9.2e-12 45.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|410669562|ref|YP_006921933.1| - 2.1e-08 33.9 0.0 4e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|410669562|ref|YP_006921933.1| - 1.1e-05 25.4 0.0 1.8e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|410669562|ref|YP_006921933.1| - 0.00066 19.6 1.8 0.00076 19.4 0.2 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|410669562|ref|YP_006921933.1| - 0.00098 18.9 0.0 0.0031 17.3 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|410669562|ref|YP_006921933.1| - 0.0019 18.0 0.0 0.0041 16.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|410669562|ref|YP_006921933.1| - 0.0092 15.6 0.0 0.027 14.1 0.0 1.7 1 0 0 1 1 1 1 GHKL domain PAS_3 PF08447.6 gi|410669562|ref|YP_006921933.1| - 0.092 12.8 0.0 0.27 11.3 0.0 1.9 1 0 0 1 1 1 0 PAS fold Peptidase_M1 PF01433.15 gi|410669563|ref|YP_006921934.1| - 9.1e-08 31.5 0.4 2.1e-06 27.0 0.1 2.6 1 1 1 2 2 2 1 Peptidase family M1 Peptidase_MA_2 PF13485.1 gi|410669563|ref|YP_006921934.1| - 1.1e-07 31.9 2.1 5.5e-07 29.6 0.3 2.2 2 0 0 2 2 2 1 Peptidase MA superfamily AMP-binding_C_2 PF14535.1 gi|410669564|ref|YP_006921935.1| - 9.2e-31 105.7 0.9 3.9e-30 103.7 1.0 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|410669564|ref|YP_006921935.1| - 7.4e-17 60.8 0.0 1.8e-16 59.5 0.0 1.6 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|410669564|ref|YP_006921935.1| - 0.0015 17.2 0.0 0.004 15.8 0.0 1.6 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE DUF2099 PF09872.4 gi|410669565|ref|YP_006921936.1| - 4.6e-113 376.4 2.3 5.3e-113 376.3 1.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) 4HBT PF03061.17 gi|410669566|ref|YP_006921937.1| - 2.6e-14 53.1 0.2 3.8e-14 52.5 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|410669566|ref|YP_006921937.1| - 1.8e-07 31.1 0.6 2.4e-07 30.7 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|410669566|ref|YP_006921937.1| - 0.0014 18.4 0.0 0.0015 18.3 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily PS-DH PF14765.1 gi|410669566|ref|YP_006921937.1| - 0.062 12.4 0.0 0.38 9.8 0.0 2.0 2 1 0 2 2 2 0 Polyketide synthase dehydratase DUF421 PF04239.7 gi|410669567|ref|YP_006921938.1| - 4.1e-17 61.5 0.1 5.9e-17 61.0 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF421) YqeY PF09424.5 gi|410669567|ref|YP_006921938.1| - 0.061 13.1 0.1 0.085 12.7 0.0 1.2 1 0 0 1 1 1 0 Yqey-like protein Halogen_Hydrol PF10112.4 gi|410669567|ref|YP_006921938.1| - 0.24 10.7 1.6 0.26 10.6 0.2 1.6 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein YwiC PF14256.1 gi|410669567|ref|YP_006921938.1| - 0.26 11.3 3.2 0.35 10.9 2.2 1.2 1 0 0 1 1 1 0 YwiC-like protein Pyridox_oxidase PF01243.15 gi|410669568|ref|YP_006921939.1| - 8.4e-16 57.7 0.1 1.1e-15 57.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|410669568|ref|YP_006921939.1| - 7.6e-12 45.2 0.0 8.7e-12 45.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_oxidase_2 PF13883.1 gi|410669568|ref|YP_006921939.1| - 0.0024 17.6 0.1 0.0043 16.8 0.1 1.4 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Virul_fac_BrkB PF03631.10 gi|410669569|ref|YP_006921940.1| - 5e-48 163.7 24.7 5.7e-48 163.5 17.1 1.0 1 0 0 1 1 1 1 Virulence factor BrkB Abhydrolase_9_N PF15420.1 gi|410669569|ref|YP_006921940.1| - 3.4 7.3 11.4 1.5 8.5 4.9 2.5 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus Prok-JAB PF14464.1 gi|410669570|ref|YP_006921941.1| - 2.1e-11 43.3 0.0 2.7e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.10 gi|410669570|ref|YP_006921941.1| - 0.0011 18.5 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 RadC-like JAB domain JAB PF01398.16 gi|410669570|ref|YP_006921941.1| - 0.0041 16.8 0.0 0.013 15.1 0.0 1.8 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Toxin-JAB1 PF15659.1 gi|410669570|ref|YP_006921941.1| - 0.12 12.2 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 JAB-like toxin 1 HATPase_c PF02518.21 gi|410669571|ref|YP_006921942.1| - 5.9e-31 106.4 0.0 1.2e-30 105.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|410669571|ref|YP_006921942.1| - 2.4e-15 56.2 0.4 8.5e-15 54.5 0.0 2.1 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|410669571|ref|YP_006921942.1| - 4.4e-13 49.5 0.2 5.9e-06 26.6 0.0 2.9 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.5 gi|410669571|ref|YP_006921942.1| - 4.2e-11 42.8 0.0 3e-05 24.0 0.0 3.2 3 1 0 3 3 3 2 PAS fold PAS_8 PF13188.1 gi|410669571|ref|YP_006921942.1| - 4.6e-11 42.1 0.1 2e-08 33.7 0.0 2.7 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|410669571|ref|YP_006921942.1| - 2.9e-06 27.0 0.0 0.00012 21.8 0.0 2.7 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|410669571|ref|YP_006921942.1| - 7.3e-05 22.4 0.0 0.00022 20.9 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|410669571|ref|YP_006921942.1| - 0.00022 20.8 0.0 0.00064 19.3 0.0 1.8 1 0 0 1 1 1 1 GHKL domain PAS_10 PF13596.1 gi|410669571|ref|YP_006921942.1| - 0.0041 17.3 0.0 4.9 7.4 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|410669571|ref|YP_006921942.1| - 0.008 16.1 0.4 4.4 7.3 0.0 3.8 4 0 0 4 4 4 1 PAS fold PAS_11 PF14598.1 gi|410669571|ref|YP_006921942.1| - 0.033 14.1 0.0 0.11 12.4 0.0 1.9 1 0 0 1 1 1 0 PAS domain LXG PF04740.7 gi|410669571|ref|YP_006921942.1| - 3.1 7.5 8.3 2.1 8.0 1.3 2.7 2 1 0 2 2 2 0 LXG domain of WXG superfamily Aminotran_1_2 PF00155.16 gi|410669572|ref|YP_006921943.1| - 2.8e-62 210.7 0.0 3.2e-62 210.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|410669572|ref|YP_006921943.1| - 0.00019 19.8 0.0 0.00041 18.7 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.8 gi|410669572|ref|YP_006921943.1| - 0.0061 15.2 0.0 0.021 13.5 0.0 1.8 2 0 0 2 2 2 1 Allinase Dimeth_Pyl PF09505.5 gi|410669572|ref|YP_006921943.1| - 0.084 11.1 0.0 0.14 10.4 0.0 1.3 1 0 0 1 1 1 0 Dimethylamine methyltransferase (Dimeth_PyL) FixQ PF05545.6 gi|410669573|ref|YP_006921944.1| - 0.02 14.5 1.8 0.02 14.5 1.2 2.1 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DUF1206 PF06724.6 gi|410669573|ref|YP_006921944.1| - 1.5 8.5 5.4 0.18 11.5 0.9 1.6 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) PhoU PF01895.14 gi|410669574|ref|YP_006921945.1| - 7.3e-21 74.4 7.0 8.1e-15 55.0 1.5 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|410669574|ref|YP_006921945.1| - 2.6e-08 33.4 0.6 5.1e-08 32.4 0.0 1.9 2 0 0 2 2 2 1 Antidote-toxin recognition MazE Fer4_20 PF14691.1 gi|410669574|ref|YP_006921945.1| - 0.12 11.9 0.1 0.33 10.6 0.1 1.8 1 1 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DUF1628 PF07790.6 gi|410669575|ref|YP_006921946.1| - 0.00037 21.1 1.3 0.00081 20.0 0.2 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) KaiC PF06745.8 gi|410669576|ref|YP_006921947.1| - 7.6e-17 61.1 0.7 1.4e-16 60.3 0.5 1.3 1 1 0 1 1 1 1 KaiC GvpD PF07088.6 gi|410669576|ref|YP_006921947.1| - 9.2e-05 20.9 0.3 0.00018 20.0 0.2 1.3 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.1 gi|410669576|ref|YP_006921947.1| - 0.0057 16.0 0.0 0.012 15.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain T2SF PF00482.18 gi|410669579|ref|YP_006921950.1| - 3.5e-10 39.8 0.9 3.5e-10 39.8 0.7 2.3 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F Big_1 PF02369.11 gi|410669579|ref|YP_006921950.1| - 6.6e-06 25.9 1.8 1.8e-05 24.5 1.2 1.7 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|410669579|ref|YP_006921950.1| - 0.00039 20.4 3.3 0.00063 19.7 1.6 1.8 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain Big_3_4 PF13754.1 gi|410669579|ref|YP_006921950.1| - 0.24 11.7 8.9 1.6 9.0 2.1 3.2 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) Big_2 PF02368.13 gi|410669579|ref|YP_006921950.1| - 0.36 10.7 4.7 2.5 8.0 1.3 2.4 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 2) T2SF PF00482.18 gi|410669580|ref|YP_006921951.1| - 4e-10 39.6 1.1 4e-10 39.6 0.7 2.1 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F DUF1290 PF06947.7 gi|410669580|ref|YP_006921951.1| - 0.052 13.4 4.0 0.48 10.3 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1290) DUF543 PF04418.7 gi|410669580|ref|YP_006921951.1| - 0.93 9.4 3.4 17 5.4 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF543) T2SE PF00437.15 gi|410669581|ref|YP_006921952.1| - 2.4e-45 154.5 0.0 3.9e-45 153.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|410669581|ref|YP_006921952.1| - 0.0018 17.7 0.7 0.022 14.2 0.0 2.5 2 0 0 2 2 2 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|410669581|ref|YP_006921952.1| - 0.042 13.3 0.7 1.5 8.2 0.0 2.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family BPD_transp_1 PF00528.17 gi|410669582|ref|YP_006921953.1| - 7.7e-25 87.4 6.3 7.7e-25 87.4 4.4 2.6 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|410669583|ref|YP_006921954.1| - 9.3e-23 80.6 18.2 9.3e-23 80.6 12.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Neurensin PF14927.1 gi|410669583|ref|YP_006921954.1| - 0.013 14.8 0.2 0.061 12.6 0.2 2.0 2 0 0 2 2 2 0 Neurensin PBP_like_2 PF12849.2 gi|410669584|ref|YP_006921955.1| - 1.6e-18 67.2 10.7 2.1e-18 66.7 7.4 1.2 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|410669584|ref|YP_006921955.1| - 8.7e-09 34.5 0.6 1.4e-08 33.9 0.4 1.3 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|410669584|ref|YP_006921955.1| - 0.00056 19.7 0.2 0.0021 17.8 0.1 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein DUF1726 PF08351.6 gi|410669584|ref|YP_006921955.1| - 0.053 13.2 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1726) LysR_substrate PF03466.15 gi|410669584|ref|YP_006921955.1| - 0.11 11.5 0.0 0.19 10.7 0.0 1.5 1 0 0 1 1 1 0 LysR substrate binding domain DUF1628 PF07790.6 gi|410669584|ref|YP_006921955.1| - 1 10.1 10.9 0.37 11.5 4.8 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1628) LMWPc PF01451.16 gi|410669585|ref|YP_006921956.1| - 2.3e-14 53.8 0.0 2.7e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase CYTH PF01928.16 gi|410669586|ref|YP_006921957.1| - 8.4e-14 51.6 0.0 1.7e-13 50.6 0.0 1.5 1 0 0 1 1 1 1 CYTH domain HD PF01966.17 gi|410669586|ref|YP_006921957.1| - 0.004 17.1 0.4 0.0076 16.2 0.3 1.5 1 0 0 1 1 1 1 HD domain PPK2 PF03976.9 gi|410669587|ref|YP_006921958.1| - 2.3e-134 445.8 3.9 3.6e-86 288.1 1.7 2.0 2 0 0 2 2 2 2 Polyphosphate kinase 2 (PPK2) DUF4363 PF14276.1 gi|410669587|ref|YP_006921958.1| - 0.095 12.4 0.0 0.48 10.1 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4363) AAA_18 PF13238.1 gi|410669587|ref|YP_006921958.1| - 0.15 12.3 1.7 1.1 9.5 0.2 2.8 2 1 0 2 2 2 0 AAA domain Fer4 PF00037.22 gi|410669588|ref|YP_006921959.1| - 4.2e-16 57.7 16.1 4.9e-08 32.2 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|410669588|ref|YP_006921959.1| - 5.5e-14 51.7 24.5 1.1e-09 37.9 10.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410669588|ref|YP_006921959.1| - 8.2e-12 45.6 7.7 6.7e-06 26.7 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|410669588|ref|YP_006921959.1| - 1.9e-11 44.1 24.8 1.6e-08 34.7 9.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410669588|ref|YP_006921959.1| - 1.1e-10 40.9 15.8 2.7e-05 23.8 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|410669588|ref|YP_006921959.1| - 1.1e-10 41.2 25.3 2.1e-08 33.8 10.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410669588|ref|YP_006921959.1| - 1.9e-10 40.8 13.8 3.4e-10 40.0 9.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410669588|ref|YP_006921959.1| - 1.4e-08 34.1 14.3 0.0001 21.9 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|410669588|ref|YP_006921959.1| - 3.5e-07 30.0 14.1 0.0024 18.0 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|410669588|ref|YP_006921959.1| - 6.3e-07 29.8 8.1 0.0031 18.0 0.1 3.0 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|410669588|ref|YP_006921959.1| - 2.1e-06 27.6 10.2 0.0028 17.6 0.3 2.2 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410669588|ref|YP_006921959.1| - 5.7e-06 26.5 11.0 0.003 17.8 0.6 2.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|410669588|ref|YP_006921959.1| - 0.00018 21.8 12.2 0.024 15.0 0.4 2.9 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|410669588|ref|YP_006921959.1| - 0.00023 21.4 18.0 0.022 15.2 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|410669588|ref|YP_006921959.1| - 0.00079 19.8 15.5 0.038 14.4 1.4 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|410669588|ref|YP_006921959.1| - 0.0042 16.9 8.2 0.0085 15.9 5.4 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain ADP_PFK_GK PF04587.10 gi|410669588|ref|YP_006921959.1| - 0.026 12.7 0.2 0.034 12.3 0.1 1.1 1 0 0 1 1 1 0 ADP-specific Phosphofructokinase/Glucokinase conserved region DUF3330 PF11809.3 gi|410669588|ref|YP_006921959.1| - 3 7.7 9.6 3.3 7.6 1.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3330) CHAD PF05235.9 gi|410669589|ref|YP_006921960.1| - 4.7e-43 147.4 0.5 1.5e-42 145.7 0.1 1.8 2 0 0 2 2 2 1 CHAD domain PP_kinase_C PF13090.1 gi|410669590|ref|YP_006921961.1| - 1.2e-144 481.2 3.3 1.6e-144 480.8 2.3 1.1 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|410669590|ref|YP_006921961.1| - 1.3e-47 161.9 0.4 2.3e-47 161.2 0.3 1.4 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|410669590|ref|YP_006921961.1| - 2.8e-34 117.4 0.0 8.8e-34 115.8 0.0 1.9 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|410669590|ref|YP_006921961.1| - 3.9e-14 52.4 0.2 3.9e-07 29.8 0.1 3.3 3 0 0 3 3 3 2 PLD-like domain Pyr_redox PF00070.22 gi|410669590|ref|YP_006921961.1| - 0.013 15.8 0.2 13 6.2 0.0 3.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Ppx-GppA PF02541.11 gi|410669591|ref|YP_006921962.1| - 2.1e-35 122.2 0.0 4.2e-35 121.3 0.0 1.4 1 1 0 1 1 1 1 Ppx/GppA phosphatase family EutA PF06277.6 gi|410669591|ref|YP_006921962.1| - 6.9e-06 24.9 0.2 1.6e-05 23.6 0.1 1.5 1 1 0 1 1 1 1 Ethanolamine utilisation protein EutA FtsA PF14450.1 gi|410669591|ref|YP_006921962.1| - 0.02 14.7 0.5 0.58 10.0 0.0 3.0 3 0 0 3 3 3 0 Cell division protein FtsA DUF11 PF01345.13 gi|410669592|ref|YP_006921963.1| - 5.1e-05 23.2 1.1 0.076 13.0 0.1 3.2 3 0 0 3 3 3 2 Domain of unknown function DUF11 CARDB PF07705.6 gi|410669592|ref|YP_006921963.1| - 0.0069 16.4 1.5 0.05 13.6 0.1 3.1 4 0 0 4 4 4 1 CARDB DUF2393 PF09624.5 gi|410669592|ref|YP_006921963.1| - 0.034 13.6 0.1 3.5 7.1 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) AzlD PF05437.7 gi|410669593|ref|YP_006921964.1| - 0.063 13.2 2.4 0.072 13.0 1.7 1.1 1 0 0 1 1 1 0 Branched-chain amino acid transport protein (AzlD) COX2-transmemb PF09125.5 gi|410669593|ref|YP_006921964.1| - 0.71 9.4 7.9 0.14 11.7 2.5 1.9 1 1 1 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane DUF2244 PF10003.4 gi|410669593|ref|YP_006921964.1| - 1.2 8.4 4.9 1.2 8.4 3.4 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) zf-DHHC PF01529.15 gi|410669593|ref|YP_006921964.1| - 1.6 8.0 3.7 1.8 7.8 2.6 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase TrbC PF04956.8 gi|410669594|ref|YP_006921965.1| - 0.051 13.5 2.9 0.14 12.1 2.0 1.8 1 1 0 1 1 1 0 TrbC/VIRB2 family PhoU PF01895.14 gi|410669595|ref|YP_006921966.1| - 2.4e-19 69.5 10.1 9e-16 58.1 1.1 2.7 2 1 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|410669595|ref|YP_006921966.1| - 6e-09 35.4 0.1 1.8e-08 33.8 0.1 1.9 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Chorismate_synt PF01264.16 gi|410669596|ref|YP_006921967.1| - 7.4e-148 491.6 1.1 8.3e-148 491.4 0.8 1.0 1 0 0 1 1 1 1 Chorismate synthase Melittin PF01372.12 gi|410669596|ref|YP_006921967.1| - 4.4 6.7 7.2 14 5.1 1.1 2.8 2 0 0 2 2 2 0 Melittin Cation_efflux PF01545.16 gi|410669597|ref|YP_006921968.1| - 3.6e-63 213.2 1.8 4.1e-63 213.1 1.3 1.0 1 0 0 1 1 1 1 Cation efflux family DAGK_prokar PF01219.14 gi|410669597|ref|YP_006921968.1| - 0.026 14.1 0.6 0.13 11.8 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic diacylglycerol kinase AMP-binding_C_2 PF14535.1 gi|410669597|ref|YP_006921968.1| - 0.037 14.0 0.0 0.075 13.0 0.0 1.4 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain DUF3660 PF12398.3 gi|410669598|ref|YP_006921969.1| - 0.043 13.6 0.5 0.13 12.1 0.3 1.8 1 0 0 1 1 1 0 Receptor serine/threonine kinase FGE-sulfatase PF03781.11 gi|410669599|ref|YP_006921970.1| - 5.8e-56 189.7 6.4 5.4e-55 186.5 4.4 1.9 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 Brevenin PF03032.10 gi|410669599|ref|YP_006921970.1| - 0.13 12.1 0.1 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Brevenin/esculentin/gaegurin/rugosin family CbiA PF01656.18 gi|410669600|ref|YP_006921971.1| - 1.9e-31 109.0 0.0 2.3e-31 108.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|410669600|ref|YP_006921971.1| - 3.3e-09 36.2 0.7 5.6e-09 35.4 0.1 1.8 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|410669600|ref|YP_006921971.1| - 4.2e-06 26.5 1.5 0.00024 20.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_31 PF13614.1 gi|410669600|ref|YP_006921971.1| - 7.4e-06 25.9 0.0 3.6e-05 23.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|410669600|ref|YP_006921971.1| - 3.3e-05 24.6 0.1 6.9e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|410669600|ref|YP_006921971.1| - 4.1e-05 22.9 0.2 0.00051 19.3 0.1 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MobB PF03205.9 gi|410669600|ref|YP_006921971.1| - 6.1e-05 22.7 0.2 0.00018 21.2 0.0 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|410669600|ref|YP_006921971.1| - 0.00079 19.7 0.0 0.0013 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|410669600|ref|YP_006921971.1| - 0.0011 18.5 0.1 0.0067 16.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|410669600|ref|YP_006921971.1| - 0.0016 18.1 0.1 0.003 17.3 0.0 1.4 1 0 0 1 1 1 1 NTPase SRP54 PF00448.17 gi|410669600|ref|YP_006921971.1| - 0.0017 17.7 0.5 0.0029 17.0 0.3 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain YhjQ PF06564.7 gi|410669600|ref|YP_006921971.1| - 0.0023 17.3 0.1 0.05 12.9 0.3 2.1 2 0 0 2 2 2 1 YhjQ protein AAA_16 PF13191.1 gi|410669600|ref|YP_006921971.1| - 0.0033 17.4 0.0 0.0054 16.7 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|410669600|ref|YP_006921971.1| - 0.0043 16.5 0.1 0.0073 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain ArgK PF03308.11 gi|410669600|ref|YP_006921971.1| - 0.0057 15.4 0.2 0.0084 14.9 0.1 1.4 1 0 0 1 1 1 1 ArgK protein DUF87 PF01935.12 gi|410669600|ref|YP_006921971.1| - 0.011 15.5 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 APS_kinase PF01583.15 gi|410669600|ref|YP_006921971.1| - 0.011 15.3 0.1 0.018 14.7 0.1 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_30 PF13604.1 gi|410669600|ref|YP_006921971.1| - 0.013 15.1 0.1 0.026 14.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|410669600|ref|YP_006921971.1| - 0.013 15.4 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain MipZ PF09140.6 gi|410669600|ref|YP_006921971.1| - 0.015 14.3 0.3 0.03 13.4 0.2 1.4 1 0 0 1 1 1 0 ATPase MipZ KTI12 PF08433.5 gi|410669600|ref|YP_006921971.1| - 0.033 13.4 0.0 0.047 12.8 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 IstB_IS21 PF01695.12 gi|410669600|ref|YP_006921971.1| - 0.039 13.3 0.1 0.064 12.6 0.1 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_5 PF07728.9 gi|410669600|ref|YP_006921971.1| - 0.042 13.5 0.0 0.073 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|410669600|ref|YP_006921971.1| - 0.078 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain PRK PF00485.13 gi|410669600|ref|YP_006921971.1| - 0.089 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_2 PF07724.9 gi|410669600|ref|YP_006921971.1| - 0.1 12.4 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) NACHT PF05729.7 gi|410669600|ref|YP_006921971.1| - 0.11 12.1 0.2 0.19 11.3 0.1 1.3 1 0 0 1 1 1 0 NACHT domain Cupin_2 PF07883.6 gi|410669601|ref|YP_006921972.1| - 1.3e-12 47.0 0.1 2.8e-12 45.9 0.0 1.6 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.13 gi|410669601|ref|YP_006921972.1| - 7.9e-07 28.7 0.0 2e-06 27.5 0.0 1.5 1 1 1 2 2 2 1 Mannose-6-phosphate isomerase AraC_binding PF02311.14 gi|410669601|ref|YP_006921972.1| - 3e-06 26.9 0.3 4.8e-06 26.2 0.2 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|410669601|ref|YP_006921972.1| - 0.0038 16.6 0.0 0.0047 16.3 0.0 1.2 1 0 0 1 1 1 1 Cupin Ectoine_synth PF06339.7 gi|410669601|ref|YP_006921972.1| - 0.012 15.4 0.2 0.015 15.2 0.1 1.1 1 0 0 1 1 1 0 Ectoine synthase Auxin_BP PF02041.11 gi|410669601|ref|YP_006921972.1| - 0.069 12.5 0.2 0.1 12.0 0.1 1.4 1 1 0 1 1 1 0 Auxin binding protein DUF1498 PF07385.7 gi|410669601|ref|YP_006921972.1| - 0.11 11.6 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1498) Baculo_RING PF05883.6 gi|410669604|ref|YP_006921975.1| - 0.049 13.4 0.0 0.05 13.4 0.0 1.0 1 0 0 1 1 1 0 Baculovirus U-box/Ring-like domain Glyco_hydro_77 PF02446.12 gi|410669604|ref|YP_006921975.1| - 0.092 11.3 0.1 0.097 11.2 0.0 1.0 1 0 0 1 1 1 0 4-alpha-glucanotransferase DUF1724 PF08350.5 gi|410669606|ref|YP_006921977.1| - 8.9e-12 44.3 1.2 1e-11 44.1 0.2 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) TctA PF01970.11 gi|410669607|ref|YP_006921978.1| - 1.1e-84 284.2 38.6 1.3e-84 284.0 26.7 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family ATP_bind_3 PF01171.15 gi|410669608|ref|YP_006921979.1| - 2.1e-10 40.3 0.0 3.3e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 PP-loop family NAD_synthase PF02540.12 gi|410669608|ref|YP_006921979.1| - 2.4e-05 23.3 0.0 3.3e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|410669608|ref|YP_006921979.1| - 0.0001 20.9 0.0 0.00016 20.3 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.14 gi|410669608|ref|YP_006921979.1| - 0.00041 20.2 0.0 0.00077 19.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.16 gi|410669608|ref|YP_006921979.1| - 0.15 11.5 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase DUF2061 PF09834.4 gi|410669609|ref|YP_006921980.1| - 0.031 14.4 0.4 0.031 14.4 0.3 3.1 3 0 0 3 3 3 0 Predicted membrane protein (DUF2061) H_PPase PF03030.11 gi|410669611|ref|YP_006921982.1| - 9.3e-275 913.1 55.6 1.1e-274 912.9 38.5 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase DUF1672 PF07901.6 gi|410669612|ref|YP_006921983.1| - 0.048 12.6 0.3 0.053 12.5 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1672) Pterin_bind PF00809.17 gi|410669613|ref|YP_006921984.1| - 3.6e-13 49.3 0.4 5.2e-12 45.5 0.3 2.2 1 1 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.1 gi|410669613|ref|YP_006921984.1| - 2.2e-08 33.8 0.1 8.5e-08 31.9 0.0 2.0 2 1 1 3 3 3 1 Domain of unknown function (DUF4346) CdhD PF03599.11 gi|410669613|ref|YP_006921984.1| - 0.0003 19.3 0.0 0.00043 18.8 0.0 1.2 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FtsZ_C PF12327.3 gi|410669614|ref|YP_006921985.1| - 1.4e-33 114.8 0.7 5.9e-33 112.8 0.1 2.4 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|410669614|ref|YP_006921985.1| - 1e-32 113.6 0.6 4.2e-32 111.7 0.4 1.8 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|410669614|ref|YP_006921985.1| - 0.012 15.4 0.8 0.056 13.2 0.2 2.2 1 1 0 2 2 2 0 ThiF family DUF218 PF02698.12 gi|410669614|ref|YP_006921985.1| - 0.07 12.6 0.0 0.2 11.1 0.0 1.9 1 0 0 1 1 1 0 DUF218 domain CPSase_L_chain PF00289.17 gi|410669614|ref|YP_006921985.1| - 0.075 13.1 0.3 0.34 11.0 0.2 2.1 1 1 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Peptidase_M50 PF02163.17 gi|410669615|ref|YP_006921986.1| - 1e-27 96.3 0.0 5.7e-27 93.9 0.0 2.1 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|410669615|ref|YP_006921986.1| - 1.2e-15 57.0 0.1 8.7e-07 28.7 0.0 2.4 1 1 1 2 2 2 2 PDZ domain PDZ PF00595.19 gi|410669615|ref|YP_006921986.1| - 1.4e-07 31.6 0.1 0.014 15.5 0.0 3.0 3 0 0 3 3 3 2 PDZ domain (Also known as DHR or GLGF) Tricorn_PDZ PF14685.1 gi|410669615|ref|YP_006921986.1| - 0.00022 20.9 0.2 0.083 12.6 0.0 2.4 2 0 0 2 2 2 2 Tricorn protease PDZ domain GRASP55_65 PF04495.9 gi|410669615|ref|YP_006921986.1| - 0.0038 17.2 0.1 0.11 12.4 0.0 2.3 1 1 1 2 2 2 1 GRASP55/65 PDZ-like domain TrkA_N PF02254.13 gi|410669616|ref|YP_006921987.1| - 1.1e-22 80.1 3.5 1.6e-22 79.7 2.4 1.2 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|410669616|ref|YP_006921987.1| - 2.6e-13 49.4 7.7 4.9e-13 48.6 5.4 1.3 1 0 0 1 1 1 1 Ion channel TrkA_C PF02080.16 gi|410669616|ref|YP_006921987.1| - 9.3e-10 37.9 0.0 9.4e-09 34.7 0.0 2.3 2 0 0 2 2 2 1 TrkA-C domain ATP-synt_ab PF00006.20 gi|410669616|ref|YP_006921987.1| - 0.019 14.4 0.4 0.028 13.9 0.2 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain EAV_GS PF01309.13 gi|410669616|ref|YP_006921987.1| - 0.056 12.9 1.3 0.86 9.0 0.3 2.1 2 0 0 2 2 2 0 Equine arteritis virus small envelope glycoprotein Ion_trans PF00520.26 gi|410669616|ref|YP_006921987.1| - 0.084 12.1 8.2 0.16 11.2 5.7 1.4 1 0 0 1 1 1 0 Ion transport protein Peptidase_A24 PF01478.13 gi|410669616|ref|YP_006921987.1| - 0.21 11.7 3.0 0.36 11.0 2.1 1.4 1 0 0 1 1 1 0 Type IV leader peptidase family DUF2101 PF09874.4 gi|410669616|ref|YP_006921987.1| - 2.4 7.6 6.2 4.5 6.6 4.3 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) TrkA_N PF02254.13 gi|410669617|ref|YP_006921988.1| - 9.8e-28 96.4 0.2 1.7e-27 95.6 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|410669617|ref|YP_006921988.1| - 6.2e-11 41.7 0.1 2.1e-10 40.0 0.1 1.9 2 0 0 2 2 2 1 TrkA-C domain CPSase_L_chain PF00289.17 gi|410669617|ref|YP_006921988.1| - 0.00028 20.9 0.0 0.11 12.5 0.0 2.4 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain XdhC_C PF13478.1 gi|410669617|ref|YP_006921988.1| - 0.0014 18.9 0.0 0.0032 17.7 0.0 1.5 1 1 0 1 1 1 1 XdhC Rossmann domain AdoHcyase_NAD PF00670.16 gi|410669617|ref|YP_006921988.1| - 0.006 16.4 0.2 0.013 15.3 0.1 1.7 1 1 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ThiF PF00899.16 gi|410669617|ref|YP_006921988.1| - 0.0067 16.2 0.6 0.018 14.8 0.4 1.8 1 1 0 1 1 1 1 ThiF family 2-Hacid_dh_C PF02826.14 gi|410669617|ref|YP_006921988.1| - 0.0078 15.3 0.0 0.015 14.4 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|410669617|ref|YP_006921988.1| - 0.013 15.5 0.1 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|410669617|ref|YP_006921988.1| - 0.041 13.4 0.0 0.096 12.2 0.0 1.6 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_18 PF12847.2 gi|410669617|ref|YP_006921988.1| - 0.14 12.7 0.0 0.29 11.7 0.0 1.7 2 1 0 2 2 2 0 Methyltransferase domain TauE PF01925.14 gi|410669618|ref|YP_006921989.1| - 1.6e-43 148.8 39.5 1.9e-43 148.6 27.4 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE B5 PF03484.10 gi|410669619|ref|YP_006921990.1| - 6.9e-15 54.6 0.5 5.6e-14 51.7 0.1 2.4 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|410669619|ref|YP_006921990.1| - 3.5e-14 52.6 0.0 7.5e-14 51.5 0.0 1.5 2 0 0 2 2 2 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|410669619|ref|YP_006921990.1| - 0.00036 19.8 0.0 0.0012 18.0 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) RsbU_N PF08673.5 gi|410669619|ref|YP_006921990.1| - 0.071 13.1 0.0 0.39 10.7 0.0 2.3 2 0 0 2 2 2 0 Phosphoserine phosphatase RsbU, N-terminal domain AAR2 PF05282.6 gi|410669620|ref|YP_006921991.1| - 0.33 9.8 2.2 0.38 9.6 1.6 1.0 1 0 0 1 1 1 0 AAR2 protein T2SE PF00437.15 gi|410669621|ref|YP_006921992.1| - 1.1e-49 168.8 0.2 3.1e-49 167.3 0.0 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|410669621|ref|YP_006921992.1| - 0.0094 15.4 0.1 0.021 14.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SF PF00482.18 gi|410669622|ref|YP_006921993.1| - 4.5e-32 110.5 1.5 2e-17 63.2 0.8 4.9 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F RNase_HII PF01351.13 gi|410669623|ref|YP_006921994.1| - 2e-49 167.9 0.0 2.2e-49 167.7 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII PKD PF00801.15 gi|410669625|ref|YP_006921996.1| - 8.4e-19 67.0 16.6 1.2e-15 56.9 2.4 4.9 5 0 0 5 5 5 2 PKD domain Big_3_3 PF13750.1 gi|410669625|ref|YP_006921996.1| - 4.3e-10 39.2 10.7 2.1e-05 24.0 0.0 4.8 6 0 0 6 6 6 2 Bacterial Ig-like domain (group 3) Big_3_4 PF13754.1 gi|410669625|ref|YP_006921996.1| - 1.9e-08 34.4 1.1 1.9e-08 34.4 0.8 6.9 7 1 0 7 7 7 2 Bacterial Ig-like domain (group 3) FlgD_ig PF13860.1 gi|410669625|ref|YP_006921996.1| - 2e-07 30.6 6.7 0.0016 18.1 0.0 5.7 5 1 1 6 6 6 3 FlgD Ig-like domain GATase_5 PF13507.1 gi|410669626|ref|YP_006921997.1| - 2.9e-46 157.4 0.0 3.4e-46 157.2 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|410669626|ref|YP_006921997.1| - 3.1e-09 36.5 0.0 6.1e-09 35.6 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|410669626|ref|YP_006921997.1| - 6.2e-09 35.4 0.0 8.9e-09 34.9 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|410669626|ref|YP_006921997.1| - 4.8e-08 32.7 0.0 2e-07 30.7 0.0 1.8 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|410669626|ref|YP_006921997.1| - 1.5e-07 30.8 0.0 2.4e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase SNO PF01174.14 gi|410669626|ref|YP_006921997.1| - 9.9e-05 22.0 0.0 0.00071 19.2 0.0 1.9 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|410669626|ref|YP_006921997.1| - 0.00038 19.9 0.0 0.00096 18.6 0.0 1.7 1 1 0 1 1 1 1 Peptidase C26 PurS PF02700.9 gi|410669627|ref|YP_006921998.1| - 4.7e-27 93.7 0.2 5.2e-27 93.6 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase ThiS PF02597.15 gi|410669627|ref|YP_006921998.1| - 0.096 13.1 0.0 0.18 12.2 0.0 1.5 1 1 0 1 1 1 0 ThiS family CDP-OH_P_transf PF01066.16 gi|410669628|ref|YP_006921999.1| - 2.4e-18 66.2 6.6 2.4e-18 66.2 4.6 1.8 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF4131 PF13567.1 gi|410669628|ref|YP_006921999.1| - 0.031 13.6 0.5 0.031 13.6 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Peptidase_M50 PF02163.17 gi|410669628|ref|YP_006921999.1| - 0.099 11.5 0.1 0.16 10.8 0.0 1.5 1 1 0 1 1 1 0 Peptidase family M50 DUF986 PF06173.7 gi|410669628|ref|YP_006921999.1| - 0.11 12.3 0.2 0.11 12.3 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF986) GerA PF03323.8 gi|410669628|ref|YP_006921999.1| - 0.3 9.1 6.3 0.72 7.9 4.4 1.6 1 1 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein ATP_bind_4 PF01902.12 gi|410669630|ref|YP_006922001.1| - 8.4e-71 237.8 1.8 5e-70 235.2 0.5 2.7 3 0 0 3 3 3 1 ATP-binding region Asn_synthase PF00733.16 gi|410669630|ref|YP_006922001.1| - 8.6e-54 182.7 0.1 8e-48 163.1 0.1 2.9 2 1 0 2 2 2 2 Asparagine synthase GATase_7 PF13537.1 gi|410669630|ref|YP_006922001.1| - 1.1e-14 54.2 0.0 5.6e-14 51.9 0.0 2.3 2 1 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|410669630|ref|YP_006922001.1| - 1.4e-07 31.5 0.0 8e-07 29.0 0.0 2.3 2 1 0 2 2 2 1 Glutamine amidotransferase domain tRNA_Me_trans PF03054.11 gi|410669630|ref|YP_006922001.1| - 0.00018 20.2 0.0 0.1 11.1 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.12 gi|410669630|ref|YP_006922001.1| - 0.00056 18.8 0.0 0.0039 16.1 0.0 2.2 1 1 0 2 2 2 1 NAD synthase QueC PF06508.8 gi|410669630|ref|YP_006922001.1| - 0.0013 18.0 0.0 0.75 9.0 0.0 3.2 3 0 0 3 3 3 2 Queuosine biosynthesis protein QueC Phage_DsbA PF11126.3 gi|410669630|ref|YP_006922001.1| - 0.084 12.9 0.9 0.71 10.0 0.2 2.6 2 0 0 2 2 2 0 Transcriptional regulator DsbA GlcNAc PF11397.3 gi|410669631|ref|YP_006922002.1| - 0.036 13.1 0.1 0.054 12.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase (GlcNAc) Nramp PF01566.13 gi|410669632|ref|YP_006922003.1| - 5.4e-09 35.3 23.7 8.3e-09 34.6 16.4 1.2 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein DUF4407 PF14362.1 gi|410669632|ref|YP_006922003.1| - 0.62 8.9 3.2 1.5 7.7 2.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) LrgA PF03788.9 gi|410669633|ref|YP_006922004.1| - 1.4e-28 98.4 9.8 1.7e-28 98.1 6.8 1.1 1 0 0 1 1 1 1 LrgA family DUF4231 PF14015.1 gi|410669633|ref|YP_006922004.1| - 0.2 11.6 3.3 0.38 10.7 2.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DoxX PF07681.7 gi|410669633|ref|YP_006922004.1| - 3.6 8.0 13.0 1.3 9.4 6.8 1.8 2 0 0 2 2 2 0 DoxX DUF2701 PF10857.3 gi|410669633|ref|YP_006922004.1| - 7.1 6.4 6.2 8.2 6.2 0.6 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2701) LrgB PF04172.11 gi|410669634|ref|YP_006922005.1| - 3.8e-82 274.6 13.3 4.6e-82 274.3 9.2 1.1 1 0 0 1 1 1 1 LrgB-like family DUF2953 PF11167.3 gi|410669634|ref|YP_006922005.1| - 0.66 9.9 5.0 18 5.3 0.1 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2953) 7TM_GPCR_Srb PF02175.11 gi|410669634|ref|YP_006922005.1| - 0.83 9.1 4.6 0.14 11.7 0.6 1.5 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Srb Polysacc_synt_3 PF13440.1 gi|410669634|ref|YP_006922005.1| - 0.96 8.8 13.9 0.032 13.7 4.6 2.0 1 1 1 2 2 2 0 Polysaccharide biosynthesis protein CbtA PF09490.5 gi|410669634|ref|YP_006922005.1| - 1.3 8.2 6.0 0.6 9.3 1.1 2.3 1 1 0 2 2 2 0 Probable cobalt transporter subunit (CbtA) XPG_I PF00867.13 gi|410669636|ref|YP_006922007.1| - 1.4e-24 85.9 0.0 2.6e-24 85.0 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|410669636|ref|YP_006922007.1| - 1.2e-22 80.0 0.0 2.1e-22 79.2 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|410669636|ref|YP_006922007.1| - 0.011 15.9 0.0 0.054 13.7 0.0 2.2 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.2 gi|410669636|ref|YP_006922007.1| - 0.12 12.3 0.1 0.33 10.8 0.1 1.8 1 1 0 1 1 1 0 Helix-hairpin-helix motif Abi PF02517.11 gi|410669637|ref|YP_006922008.1| - 7.8e-09 35.5 12.3 2.6e-08 33.8 8.2 2.1 1 1 1 2 2 2 1 CAAX protease self-immunity DUF4407 PF14362.1 gi|410669637|ref|YP_006922008.1| - 0.0069 15.3 0.6 0.0069 15.3 0.4 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4407) SAYSvFN PF10260.4 gi|410669637|ref|YP_006922008.1| - 0.33 10.7 3.5 4.3 7.1 0.1 2.9 2 0 0 2 2 2 0 Uncharacterized conserved domain (SAYSvFN) DUF2929 PF11151.3 gi|410669638|ref|YP_006922009.1| - 0.29 11.2 9.9 0.64 10.1 1.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2929) DUF3566 PF12089.3 gi|410669638|ref|YP_006922009.1| - 0.97 9.4 12.7 27 4.7 8.6 2.4 1 1 1 2 2 2 0 Transmembrane domain of unknown function (DUF3566) Yip1 PF04893.12 gi|410669638|ref|YP_006922009.1| - 1.3 8.5 12.9 1.6 8.2 9.0 1.1 1 0 0 1 1 1 0 Yip1 domain Na_Ca_ex PF01699.19 gi|410669638|ref|YP_006922009.1| - 1.8 8.1 12.0 2.1 7.9 8.3 1.1 1 0 0 1 1 1 0 Sodium/calcium exchanger protein MpPF26 PF07666.6 gi|410669638|ref|YP_006922009.1| - 2.1 8.2 6.7 2.7 7.9 4.6 1.2 1 0 0 1 1 1 0 M penetrans paralogue family 26 Cellulose_synt PF03552.9 gi|410669638|ref|YP_006922009.1| - 3.2 5.9 5.1 3.5 5.8 3.5 1.0 1 0 0 1 1 1 0 Cellulose synthase Sdh_cyt PF01127.17 gi|410669638|ref|YP_006922009.1| - 6.6 6.5 9.0 18 5.1 5.9 1.8 1 1 0 1 1 1 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Ion_trans_2 PF07885.11 gi|410669638|ref|YP_006922009.1| - 10 5.9 13.4 10 5.8 6.1 2.4 1 1 1 2 2 2 0 Ion channel DUF86 PF01934.12 gi|410669639|ref|YP_006922010.1| - 3.3e-10 39.6 0.1 3.7e-10 39.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|410669640|ref|YP_006922011.1| - 3.5e-12 46.4 0.0 3.8e-12 46.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|410669640|ref|YP_006922011.1| - 0.068 13.2 0.0 0.074 13.1 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm YcfA PF07927.7 gi|410669641|ref|YP_006922012.1| - 3.4e-14 52.4 0.1 4e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 YcfA-like protein HTH_11 PF08279.7 gi|410669641|ref|YP_006922012.1| - 0.027 14.0 0.0 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 HTH domain UPF0150 PF03681.10 gi|410669642|ref|YP_006922013.1| - 3.5e-15 55.3 0.1 5e-15 54.8 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF3832 PF12909.2 gi|410669642|ref|YP_006922013.1| - 0.0092 16.0 0.1 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3832) zf-U1 PF06220.7 gi|410669644|ref|YP_006922015.1| - 0.25 10.9 2.1 4.1 7.0 0.1 2.8 3 0 0 3 3 3 0 U1 zinc finger TPP_enzyme_C PF02775.16 gi|410669645|ref|YP_006922016.1| - 1.4e-41 141.5 0.1 7.5e-41 139.2 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|410669645|ref|YP_006922016.1| - 9.1e-27 93.4 0.0 1.8e-26 92.5 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_N PF02776.13 gi|410669645|ref|YP_006922016.1| - 1.5e-10 40.8 0.0 8.5e-10 38.3 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMP-binding_C_2 PF14535.1 gi|410669646|ref|YP_006922017.1| - 3.2e-27 94.3 0.2 1.4e-26 92.3 0.1 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|410669646|ref|YP_006922017.1| - 9.2e-13 47.3 0.0 1.6e-12 46.5 0.0 1.4 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.8 gi|410669646|ref|YP_006922017.1| - 0.0026 16.3 0.0 0.27 9.6 0.0 2.3 2 0 0 2 2 2 2 GH3 auxin-responsive promoter POR PF01558.13 gi|410669647|ref|YP_006922018.1| - 1.6e-33 116.0 0.1 1.8e-33 115.8 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase VirJ PF06057.6 gi|410669647|ref|YP_006922018.1| - 0.099 12.4 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial virulence protein (VirJ) TPP_enzyme_C PF02775.16 gi|410669648|ref|YP_006922019.1| - 6.3e-24 84.2 0.9 1.1e-23 83.4 0.6 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|410669648|ref|YP_006922019.1| - 1e-16 61.1 0.4 1.6e-16 60.5 0.3 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|410669648|ref|YP_006922019.1| - 6.7e-09 34.9 15.6 5e-06 25.8 1.4 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|410669648|ref|YP_006922019.1| - 1.2e-07 31.4 13.4 0.00025 20.8 1.7 3.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410669648|ref|YP_006922019.1| - 1.4e-05 24.7 9.8 6.6e-05 22.6 7.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410669648|ref|YP_006922019.1| - 2.6e-05 24.5 11.5 0.0033 17.7 0.8 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410669648|ref|YP_006922019.1| - 0.00019 21.1 19.4 0.0013 18.4 1.5 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|410669648|ref|YP_006922019.1| - 0.00025 21.5 12.2 0.034 14.7 0.5 3.4 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|410669648|ref|YP_006922019.1| - 0.00062 19.9 8.5 0.00062 19.9 5.9 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|410669648|ref|YP_006922019.1| - 0.00073 19.8 9.5 0.3 11.4 0.4 3.1 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|410669648|ref|YP_006922019.1| - 0.00095 18.9 16.1 0.015 15.1 1.4 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain TPP_enzyme_N PF02776.13 gi|410669648|ref|YP_006922019.1| - 0.012 15.1 0.9 0.023 14.1 0.3 1.6 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_16 PF13484.1 gi|410669648|ref|YP_006922019.1| - 0.013 16.1 10.2 0.018 15.7 1.6 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Transket_pyr PF02779.19 gi|410669648|ref|YP_006922019.1| - 0.017 14.5 0.1 0.059 12.8 0.1 1.9 1 1 0 1 1 1 0 Transketolase, pyrimidine binding domain Fer4_8 PF13183.1 gi|410669648|ref|YP_006922019.1| - 0.023 14.7 10.0 0.09 12.8 6.9 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410669648|ref|YP_006922019.1| - 0.051 13.9 7.8 0.24 11.7 1.0 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410669648|ref|YP_006922019.1| - 0.14 12.5 18.9 0.2 12.0 2.9 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain SSF PF00474.12 gi|410669649|ref|YP_006922020.1| - 8.6e-49 166.2 33.8 1.4e-48 165.5 23.4 1.3 1 1 0 1 1 1 1 Sodium:solute symporter family DUF523 PF04463.7 gi|410669652|ref|YP_006922023.1| - 6.3e-36 123.2 0.0 1.2e-35 122.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF1722 PF08349.6 gi|410669652|ref|YP_006922023.1| - 1.2e-06 28.3 0.0 2e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) Peptidase_M20 PF01546.23 gi|410669653|ref|YP_006922024.1| - 2.8e-24 85.6 0.0 9.4e-24 83.9 0.0 1.7 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|410669653|ref|YP_006922024.1| - 3.2e-07 30.0 0.1 7.6e-07 28.8 0.1 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|410669653|ref|YP_006922024.1| - 0.02 14.6 0.0 0.045 13.4 0.0 1.6 1 1 0 1 1 1 0 Peptidase family M28 Peptidase_M42 PF05343.9 gi|410669653|ref|YP_006922024.1| - 0.066 11.9 0.0 0.66 8.6 0.0 2.2 2 0 0 2 2 2 0 M42 glutamyl aminopeptidase Macro PF01661.16 gi|410669654|ref|YP_006922025.1| - 9.3e-41 138.4 0.0 1.2e-40 138.0 0.0 1.1 1 0 0 1 1 1 1 Macro domain GATase PF00117.23 gi|410669655|ref|YP_006922026.1| - 2.8e-20 72.5 0.0 3.6e-20 72.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|410669655|ref|YP_006922026.1| - 8.9e-08 31.8 0.0 1.1e-07 31.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.9 gi|410669655|ref|YP_006922026.1| - 5.2e-05 22.8 0.0 8.6e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|410669655|ref|YP_006922026.1| - 0.011 15.1 0.0 0.017 14.5 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family DUF4066 PF13278.1 gi|410669655|ref|YP_006922026.1| - 0.084 12.1 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Putative amidotransferase BPL_N PF09825.4 gi|410669655|ref|YP_006922026.1| - 0.12 11.1 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal Cohesin PF00963.13 gi|410669656|ref|YP_006922027.1| - 0.021 14.7 0.1 0.021 14.7 0.1 2.2 3 0 0 3 3 3 0 Cohesin domain NS3_envE PF02723.9 gi|410669656|ref|YP_006922027.1| - 0.043 13.7 0.2 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 Non-structural protein NS3/Small envelope protein E Serglycin PF04360.7 gi|410669656|ref|YP_006922027.1| - 3.6 7.3 6.7 6.1 6.5 4.0 2.0 1 1 1 2 2 2 0 Serglycin Methyltransf_31 PF13847.1 gi|410669657|ref|YP_006922028.1| - 1.4e-23 83.1 0.0 2e-23 82.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|410669657|ref|YP_006922028.1| - 1.1e-22 80.3 0.0 2.1e-22 79.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|410669657|ref|YP_006922028.1| - 1.7e-17 63.5 0.0 3.6e-17 62.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|410669657|ref|YP_006922028.1| - 1.4e-15 57.5 0.0 2.4e-15 56.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|410669657|ref|YP_006922028.1| - 3.9e-15 55.6 0.0 1.1e-14 54.1 0.0 1.7 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|410669657|ref|YP_006922028.1| - 9.8e-15 54.7 0.1 2.3e-14 53.5 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410669657|ref|YP_006922028.1| - 6.3e-13 49.2 0.0 1e-12 48.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|410669657|ref|YP_006922028.1| - 1.5e-08 34.2 0.0 2.7e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|410669657|ref|YP_006922028.1| - 4.9e-07 29.0 0.0 1.4e-06 27.5 0.0 1.7 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|410669657|ref|YP_006922028.1| - 1.2e-05 24.1 0.0 1.9e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.12 gi|410669657|ref|YP_006922028.1| - 1.4e-05 24.2 0.0 3.1e-05 23.1 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase PCMT PF01135.14 gi|410669657|ref|YP_006922028.1| - 9.4e-05 22.0 0.0 0.00015 21.3 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.6 gi|410669657|ref|YP_006922028.1| - 0.00011 21.6 0.0 0.00018 20.9 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_15 PF09445.5 gi|410669657|ref|YP_006922028.1| - 0.00012 21.7 0.1 0.00021 20.8 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_26 PF13659.1 gi|410669657|ref|YP_006922028.1| - 0.00021 21.3 0.0 0.00038 20.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|410669657|ref|YP_006922028.1| - 0.00035 20.2 0.0 0.002 17.7 0.0 2.0 1 1 0 1 1 1 1 Hypothetical methyltransferase UPF0066 PF01980.11 gi|410669657|ref|YP_006922028.1| - 0.00047 20.1 0.1 0.027 14.4 0.0 3.1 2 1 0 2 2 2 1 Uncharacterised protein family UPF0066 PrmA PF06325.8 gi|410669657|ref|YP_006922028.1| - 0.00073 18.7 0.0 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|410669657|ref|YP_006922028.1| - 0.0021 17.6 0.0 0.0035 16.9 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 DREV PF05219.7 gi|410669657|ref|YP_006922028.1| - 0.0045 15.9 0.0 0.0077 15.1 0.0 1.4 1 0 0 1 1 1 1 DREV methyltransferase FmrO PF07091.6 gi|410669657|ref|YP_006922028.1| - 0.018 14.0 0.0 0.025 13.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_32 PF13679.1 gi|410669657|ref|YP_006922028.1| - 0.019 14.6 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.9 gi|410669657|ref|YP_006922028.1| - 0.023 13.8 0.0 0.042 13.0 0.0 1.4 1 0 0 1 1 1 0 Tellurite resistance protein TehB MetW PF07021.7 gi|410669657|ref|YP_006922028.1| - 0.024 14.0 0.0 0.039 13.3 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Tic20 PF09685.5 gi|410669658|ref|YP_006922029.1| - 0.12 12.3 0.0 0.13 12.2 0.0 1.0 1 0 0 1 1 1 0 Tic20-like protein SSF PF00474.12 gi|410669659|ref|YP_006922030.1| - 1.9e-59 201.3 39.9 2.5e-59 200.9 27.6 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF1056 PF06341.6 gi|410669660|ref|YP_006922031.1| - 0.13 12.2 0.0 0.14 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1056) CcmD PF04995.9 gi|410669660|ref|YP_006922031.1| - 0.14 11.8 0.8 0.18 11.5 0.6 1.1 1 0 0 1 1 1 0 Heme exporter protein D (CcmD) SSF PF00474.12 gi|410669661|ref|YP_006922032.1| - 1e-32 113.2 23.4 1e-32 113.2 16.2 1.5 2 0 0 2 2 2 1 Sodium:solute symporter family PRA1 PF03208.14 gi|410669661|ref|YP_006922032.1| - 8.9 5.6 15.7 0.1 11.9 1.9 2.5 2 1 0 2 2 2 0 PRA1 family protein SSF PF00474.12 gi|410669662|ref|YP_006922033.1| - 9e-62 208.9 41.2 1.1e-61 208.6 28.6 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family DUF1056 PF06341.6 gi|410669663|ref|YP_006922034.1| - 0.11 12.5 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1056) CcmD PF04995.9 gi|410669663|ref|YP_006922034.1| - 0.16 11.6 0.8 0.21 11.3 0.6 1.1 1 0 0 1 1 1 0 Heme exporter protein D (CcmD) SSF PF00474.12 gi|410669664|ref|YP_006922035.1| - 1.4e-61 208.3 40.6 1.9e-61 207.9 28.1 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Lactamase_B_3 PF13483.1 gi|410669665|ref|YP_006922036.1| - 4.2e-26 91.6 0.0 5.4e-26 91.2 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|410669665|ref|YP_006922036.1| - 1.7e-16 60.3 0.2 2.2e-16 59.9 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|410669665|ref|YP_006922036.1| - 1.4e-10 41.1 1.5 6.4e-10 39.0 1.1 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DDE_Tnp_1 PF01609.16 gi|410669666|ref|YP_006922037.1| - 6.8e-09 35.5 2.7 7.2e-08 32.2 1.8 2.1 1 1 0 1 1 1 1 Transposase DDE domain DDE_5 PF13546.1 gi|410669666|ref|YP_006922037.1| - 0.039 12.7 0.0 0.072 11.9 0.0 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease DUF2117 PF09890.4 gi|410669667|ref|YP_006922038.1| - 3.3e-64 216.0 0.1 4.3e-64 215.6 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) HTH_34 PF13601.1 gi|410669668|ref|YP_006922039.1| - 0.0018 18.2 0.0 0.0028 17.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|410669668|ref|YP_006922039.1| - 0.0051 16.2 0.1 0.0065 15.9 0.1 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|410669668|ref|YP_006922039.1| - 0.022 14.4 0.2 0.043 13.5 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Peptidase_S64 PF08192.6 gi|410669668|ref|YP_006922039.1| - 0.041 12.2 0.1 0.043 12.1 0.1 1.0 1 0 0 1 1 1 0 Peptidase family S64 DUF387 PF04079.11 gi|410669668|ref|YP_006922039.1| - 0.05 12.9 0.1 0.07 12.4 0.1 1.3 1 1 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) HTH_5 PF01022.15 gi|410669668|ref|YP_006922039.1| - 0.1 12.2 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|410669668|ref|YP_006922039.1| - 0.17 11.7 0.8 0.34 10.7 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain NAAA-beta PF15508.1 gi|410669671|ref|YP_006922042.1| - 0.066 13.5 0.2 2.8 8.3 0.0 2.3 2 1 0 2 2 2 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase Frankia_peptide PF14407.1 gi|410669671|ref|YP_006922042.1| - 0.13 11.9 0.5 1.5 8.6 0.0 2.5 2 1 1 3 3 3 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. CbiA PF01656.18 gi|410669672|ref|YP_006922043.1| - 6e-07 29.0 0.0 7.1e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|410669672|ref|YP_006922043.1| - 0.0022 17.2 0.0 0.0029 16.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family GGDEF PF00990.16 gi|410669672|ref|YP_006922043.1| - 0.062 12.8 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 GGDEF domain TrmB PF01978.14 gi|410669673|ref|YP_006922044.1| - 0.00033 20.3 0.1 0.00056 19.5 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB SMC_Nse1 PF07574.8 gi|410669673|ref|YP_006922044.1| - 0.035 13.7 0.7 6.5 6.3 0.0 2.2 1 1 0 2 2 2 0 Nse1 non-SMC component of SMC5-6 complex PaaX PF07848.7 gi|410669673|ref|YP_006922044.1| - 0.075 13.0 0.2 0.14 12.1 0.2 1.4 1 0 0 1 1 1 0 PaaX-like protein KaiC PF06745.8 gi|410669674|ref|YP_006922045.1| - 8e-30 103.6 0.2 9.8e-30 103.3 0.1 1.1 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|410669674|ref|YP_006922045.1| - 3e-05 22.5 0.0 9.2e-05 20.9 0.0 1.6 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.1 gi|410669674|ref|YP_006922045.1| - 0.00041 19.8 0.1 0.0011 18.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|410669674|ref|YP_006922045.1| - 0.065 12.9 0.1 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF2075 PF09848.4 gi|410669674|ref|YP_006922045.1| - 0.07 12.1 0.0 0.089 11.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ATP_bind_1 PF03029.12 gi|410669674|ref|YP_006922045.1| - 0.072 12.6 0.1 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein FtsK_SpoIIIE PF01580.13 gi|410669674|ref|YP_006922045.1| - 0.074 12.5 0.1 0.35 10.2 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|410669674|ref|YP_006922045.1| - 0.077 12.9 0.1 0.094 12.6 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.7 gi|410669674|ref|YP_006922045.1| - 0.1 12.2 0.3 0.49 10.0 0.1 2.0 1 1 0 2 2 2 0 NACHT domain Rad51 PF08423.6 gi|410669674|ref|YP_006922045.1| - 0.11 11.4 0.1 0.11 11.4 0.1 1.3 1 1 0 1 1 1 0 Rad51 RecA PF00154.16 gi|410669674|ref|YP_006922045.1| - 0.14 11.1 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein DUF1846 PF08903.6 gi|410669674|ref|YP_006922045.1| - 0.16 10.4 0.0 0.27 9.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1846) Zeta_toxin PF06414.7 gi|410669674|ref|YP_006922045.1| - 0.18 10.8 0.0 0.26 10.3 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin Acetyltransf_1 PF00583.19 gi|410669675|ref|YP_006922046.1| - 8.7e-06 25.6 0.0 1.9e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|410669675|ref|YP_006922046.1| - 0.0029 17.7 0.0 0.0054 16.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|410669675|ref|YP_006922046.1| - 0.015 15.3 0.0 0.026 14.6 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|410669675|ref|YP_006922046.1| - 0.066 12.9 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein MRP-L46 PF11788.3 gi|410669676|ref|YP_006922047.1| - 0.056 14.1 1.3 0.66 10.6 0.0 2.9 3 0 0 3 3 3 0 39S mitochondrial ribosomal protein L46 DUF1664 PF07889.7 gi|410669676|ref|YP_006922047.1| - 0.77 9.5 11.0 4.7 7.0 1.0 3.5 4 0 0 4 4 4 0 Protein of unknown function (DUF1664) Reo_sigmaC PF04582.7 gi|410669676|ref|YP_006922047.1| - 1.2 8.1 11.9 0.14 11.2 1.7 2.7 2 1 1 3 3 3 0 Reovirus sigma C capsid protein DUF948 PF06103.6 gi|410669676|ref|YP_006922047.1| - 9.8 6.1 8.0 19 5.1 1.0 3.6 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) KaiC PF06745.8 gi|410669678|ref|YP_006922049.1| - 3.2e-46 157.2 0.1 5.6e-46 156.4 0.0 1.4 2 0 0 2 2 2 1 KaiC AAA_25 PF13481.1 gi|410669678|ref|YP_006922049.1| - 3.4e-11 42.9 0.0 7.9e-11 41.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|410669678|ref|YP_006922049.1| - 1.7e-05 23.3 0.1 0.00047 18.5 0.1 2.1 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_14 PF13173.1 gi|410669678|ref|YP_006922049.1| - 0.00086 19.2 0.0 0.0019 18.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|410669678|ref|YP_006922049.1| - 0.0015 18.3 0.1 0.014 15.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|410669678|ref|YP_006922049.1| - 0.0022 18.1 0.0 0.0054 16.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|410669678|ref|YP_006922049.1| - 0.0048 17.7 0.0 0.016 16.0 0.0 1.9 2 1 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|410669678|ref|YP_006922049.1| - 0.0049 15.7 0.0 0.0087 14.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_10 PF12846.2 gi|410669678|ref|YP_006922049.1| - 0.0056 16.1 0.0 0.012 15.1 0.0 1.5 1 1 0 1 1 1 1 AAA-like domain Sigma54_activat PF00158.21 gi|410669678|ref|YP_006922049.1| - 0.011 15.2 0.1 0.032 13.7 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|410669678|ref|YP_006922049.1| - 0.013 14.9 0.0 0.035 13.5 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|410669678|ref|YP_006922049.1| - 0.013 15.2 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase FtsK_SpoIIIE PF01580.13 gi|410669678|ref|YP_006922049.1| - 0.021 14.3 0.0 0.039 13.4 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_29 PF13555.1 gi|410669678|ref|YP_006922049.1| - 0.023 14.1 0.0 0.045 13.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|410669678|ref|YP_006922049.1| - 0.025 14.2 0.0 0.049 13.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF2075 PF09848.4 gi|410669678|ref|YP_006922049.1| - 0.052 12.5 0.0 0.069 12.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.22 gi|410669678|ref|YP_006922049.1| - 0.068 13.4 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Septin PF00735.13 gi|410669678|ref|YP_006922049.1| - 0.11 11.5 0.2 0.29 10.0 0.0 1.7 2 0 0 2 2 2 0 Septin Gemin6 PF06372.7 gi|410669679|ref|YP_006922050.1| - 0.00091 18.5 0.1 0.0011 18.2 0.1 1.0 1 0 0 1 1 1 1 Gemin6 protein LSM14 PF12701.2 gi|410669679|ref|YP_006922050.1| - 0.014 15.2 0.1 0.028 14.2 0.1 1.5 1 1 0 1 1 1 0 Scd6-like Sm domain V4R PF02830.13 gi|410669680|ref|YP_006922051.1| - 2.3e-05 24.1 1.1 7e-05 22.5 0.8 1.8 1 0 0 1 1 1 1 V4R domain Ubiquitin_2 PF14560.1 gi|410669681|ref|YP_006922052.1| - 0.0066 16.6 0.1 0.014 15.6 0.1 1.6 1 1 0 1 1 1 1 Ubiquitin-like domain CheF-arch PF04283.7 gi|410669681|ref|YP_006922052.1| - 0.0069 15.6 0.0 0.01 15.0 0.0 1.3 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea GRAM PF02893.15 gi|410669681|ref|YP_006922052.1| - 0.011 15.2 0.0 0.12 11.8 0.0 2.2 2 0 0 2 2 2 0 GRAM domain Acetyltransf_10 PF13673.1 gi|410669682|ref|YP_006922053.1| - 6.6e-05 23.0 0.0 0.00011 22.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|410669682|ref|YP_006922053.1| - 0.0056 16.8 0.0 0.01 15.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Hist_deacetyl PF00850.14 gi|410669683|ref|YP_006922054.1| - 4.5e-72 242.9 0.0 5.6e-72 242.6 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain Hist_deacetyl PF00850.14 gi|410669684|ref|YP_006922055.1| - 4.4e-83 279.1 0.0 7.2e-83 278.4 0.0 1.3 1 0 0 1 1 1 1 Histone deacetylase domain Herpes_LMP1 PF05297.6 gi|410669684|ref|YP_006922055.1| - 0.6 8.9 3.4 0.92 8.3 2.4 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Arch_flagellin PF01917.11 gi|410669687|ref|YP_006922058.1| - 7.2e-44 149.6 11.3 8.4e-44 149.4 7.8 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|410669688|ref|YP_006922059.1| - 1.3e-47 161.8 10.0 1.7e-47 161.5 6.9 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Shisa PF13908.1 gi|410669688|ref|YP_006922059.1| - 0.1 12.7 0.2 0.15 12.2 0.2 1.3 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator Arch_flagellin PF01917.11 gi|410669691|ref|YP_006922062.1| - 1.6e-48 164.8 14.3 1.9e-48 164.6 9.9 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|410669692|ref|YP_006922063.1| - 1e-47 162.2 10.1 1.3e-47 161.9 7.0 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Shisa PF13908.1 gi|410669692|ref|YP_006922063.1| - 0.11 12.6 0.2 0.17 12.0 0.2 1.3 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator Nucleos_tra2_N PF01773.15 gi|410669693|ref|YP_006922064.1| - 0.029 14.7 4.3 0.029 14.7 3.0 2.5 3 0 0 3 3 3 0 Na+ dependent nucleoside transporter N-terminus DUF2061 PF09834.4 gi|410669693|ref|YP_006922064.1| - 3.3 7.9 10.0 0.19 11.9 1.5 2.9 2 1 1 3 3 3 0 Predicted membrane protein (DUF2061) IGPS PF00218.16 gi|410669694|ref|YP_006922065.1| - 2e-68 230.1 0.9 2.4e-68 229.9 0.6 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase ThiG PF05690.9 gi|410669694|ref|YP_006922065.1| - 0.00014 21.0 0.7 0.00035 19.7 0.0 1.9 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|410669694|ref|YP_006922065.1| - 0.00062 19.0 0.3 0.0012 18.1 0.2 1.4 1 0 0 1 1 1 1 PcrB family FMN_dh PF01070.13 gi|410669694|ref|YP_006922065.1| - 0.0047 15.8 0.0 0.0075 15.1 0.0 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|410669694|ref|YP_006922065.1| - 0.0048 15.8 0.1 0.0089 14.9 0.0 1.4 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.16 gi|410669694|ref|YP_006922065.1| - 0.013 14.5 0.7 0.019 13.9 0.1 1.6 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase Trp_syntA PF00290.15 gi|410669694|ref|YP_006922065.1| - 0.016 13.7 0.1 0.04 12.4 0.0 1.7 2 0 0 2 2 2 0 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|410669694|ref|YP_006922065.1| - 0.018 14.3 0.1 0.042 13.1 0.0 1.6 1 0 0 1 1 1 0 Histidine biosynthesis protein NanE PF04131.9 gi|410669694|ref|YP_006922065.1| - 0.091 11.7 1.7 0.79 8.6 0.1 2.7 3 1 0 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase PALP PF00291.20 gi|410669695|ref|YP_006922066.1| - 4.1e-37 128.0 0.2 5.1e-37 127.7 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Phage_min_cap2 PF06152.6 gi|410669695|ref|YP_006922066.1| - 0.006 15.5 0.1 0.0096 14.9 0.1 1.2 1 0 0 1 1 1 1 Phage minor capsid protein 2 Trp_syntA PF00290.15 gi|410669696|ref|YP_006922067.1| - 3.5e-90 301.0 0.1 4.2e-90 300.7 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|410669696|ref|YP_006922067.1| - 4.4e-07 29.3 0.7 1.8e-06 27.4 0.3 2.0 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|410669696|ref|YP_006922067.1| - 0.00011 21.5 0.2 0.00018 20.8 0.1 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|410669696|ref|YP_006922067.1| - 0.0093 15.0 0.2 0.013 14.6 0.2 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG IMPDH PF00478.20 gi|410669696|ref|YP_006922067.1| - 0.019 13.8 0.3 0.46 9.3 0.0 2.2 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.13 gi|410669696|ref|YP_006922067.1| - 0.02 13.7 0.7 0.02 13.7 0.5 1.7 2 0 0 2 2 2 0 FMN-dependent dehydrogenase IGPS PF00218.16 gi|410669696|ref|YP_006922067.1| - 0.041 12.9 0.0 0.082 11.9 0.0 1.5 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase DHO_dh PF01180.16 gi|410669696|ref|YP_006922067.1| - 0.041 12.8 0.1 0.056 12.3 0.1 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase SRP54 PF00448.17 gi|410669697|ref|YP_006922068.1| - 4.7e-72 241.5 0.8 6.5e-72 241.0 0.5 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|410669697|ref|YP_006922068.1| - 2e-11 43.7 0.8 2e-11 43.7 0.6 2.6 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.7 gi|410669697|ref|YP_006922068.1| - 6.8e-06 25.3 0.1 1.1e-05 24.6 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.9 gi|410669697|ref|YP_006922068.1| - 2e-05 24.3 1.9 9.3e-05 22.1 1.0 2.1 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|410669697|ref|YP_006922068.1| - 5.2e-05 22.9 1.1 0.00011 21.8 0.8 1.6 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|410669697|ref|YP_006922068.1| - 6.2e-05 22.4 0.1 0.00058 19.2 0.0 2.2 2 0 0 2 2 2 1 Thymidylate kinase AAA_28 PF13521.1 gi|410669697|ref|YP_006922068.1| - 0.00036 20.5 0.0 0.00067 19.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|410669697|ref|YP_006922068.1| - 0.00047 20.2 0.1 0.0012 19.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|410669697|ref|YP_006922068.1| - 0.00056 19.5 0.1 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.1 gi|410669697|ref|YP_006922068.1| - 0.00073 19.4 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|410669697|ref|YP_006922068.1| - 0.00074 18.9 2.2 0.0066 15.8 1.5 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.1 gi|410669697|ref|YP_006922068.1| - 0.0014 19.4 0.2 0.0056 17.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain LpxK PF02606.9 gi|410669697|ref|YP_006922068.1| - 0.0022 17.0 0.1 0.008 15.1 0.0 1.8 2 0 0 2 2 2 1 Tetraacyldisaccharide-1-P 4'-kinase DUF2075 PF09848.4 gi|410669697|ref|YP_006922068.1| - 0.0026 16.7 0.4 0.0058 15.6 0.2 1.5 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA PF00004.24 gi|410669697|ref|YP_006922068.1| - 0.0033 17.6 0.1 0.0096 16.1 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.4 gi|410669697|ref|YP_006922068.1| - 0.0037 15.9 0.1 0.01 14.4 0.0 1.6 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain cobW PF02492.14 gi|410669697|ref|YP_006922068.1| - 0.008 15.6 0.5 0.018 14.4 0.3 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|410669697|ref|YP_006922068.1| - 0.011 14.5 0.1 0.02 13.7 0.1 1.4 1 0 0 1 1 1 0 ArgK protein AAA_16 PF13191.1 gi|410669697|ref|YP_006922068.1| - 0.011 15.6 0.1 0.074 13.0 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain ABC_tran PF00005.22 gi|410669697|ref|YP_006922068.1| - 0.014 15.7 0.1 0.049 13.9 0.0 1.9 2 0 0 2 2 2 0 ABC transporter AAA_10 PF12846.2 gi|410669697|ref|YP_006922068.1| - 0.017 14.5 0.0 0.024 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_19 PF13245.1 gi|410669697|ref|YP_006922068.1| - 0.018 14.8 0.1 0.032 13.9 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain DUF853 PF05872.7 gi|410669697|ref|YP_006922068.1| - 0.02 13.2 0.0 0.054 11.8 0.1 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) KTI12 PF08433.5 gi|410669697|ref|YP_006922068.1| - 0.024 13.8 0.0 0.045 12.9 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|410669697|ref|YP_006922068.1| - 0.03 14.0 0.8 0.2 11.3 0.5 2.2 1 1 0 1 1 1 0 NTPase AAA_18 PF13238.1 gi|410669697|ref|YP_006922068.1| - 0.056 13.7 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain Arf PF00025.16 gi|410669697|ref|YP_006922068.1| - 0.063 12.5 0.1 0.16 11.2 0.0 1.6 2 0 0 2 2 1 0 ADP-ribosylation factor family Helicase_RecD PF05127.9 gi|410669697|ref|YP_006922068.1| - 0.091 12.3 0.1 0.16 11.5 0.1 1.4 1 0 0 1 1 1 0 Helicase ResIII PF04851.10 gi|410669697|ref|YP_006922068.1| - 0.095 12.5 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Prefoldin PF02996.12 gi|410669698|ref|YP_006922069.1| - 2e-28 98.4 1.9 2.3e-28 98.2 1.3 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|410669698|ref|YP_006922069.1| - 1.4e-10 40.8 2.2 0.0002 21.0 0.2 2.1 2 0 0 2 2 2 2 Prefoldin subunit Snf7 PF03357.16 gi|410669698|ref|YP_006922069.1| - 0.021 14.2 10.2 0.074 12.4 7.0 1.8 1 1 0 1 1 1 0 Snf7 TBCA PF02970.11 gi|410669698|ref|YP_006922069.1| - 0.059 13.4 4.9 1.4 9.0 0.3 2.5 2 0 0 2 2 2 0 Tubulin binding cofactor A Fib_alpha PF08702.5 gi|410669698|ref|YP_006922069.1| - 0.085 12.9 3.5 0.41 10.7 0.1 2.0 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF1664 PF07889.7 gi|410669698|ref|YP_006922069.1| - 0.14 11.9 1.7 1.8 8.3 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Cob_adeno_trans PF01923.13 gi|410669698|ref|YP_006922069.1| - 0.17 11.6 2.6 0.34 10.6 0.2 1.9 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Arteri_nucleo PF01481.11 gi|410669698|ref|YP_006922069.1| - 0.2 11.7 2.8 5.5 7.1 0.9 2.1 2 0 0 2 2 2 0 Arterivirus nucleocapsid protein Syntaxin PF00804.20 gi|410669698|ref|YP_006922069.1| - 0.21 11.7 4.8 3.7 7.7 0.2 2.2 2 0 0 2 2 2 0 Syntaxin DUF948 PF06103.6 gi|410669698|ref|YP_006922069.1| - 0.34 10.8 3.5 2.8 7.8 0.1 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Rootletin PF15035.1 gi|410669698|ref|YP_006922069.1| - 0.4 10.6 6.5 1.7 8.6 0.2 2.0 2 0 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion Tropomyosin_1 PF12718.2 gi|410669698|ref|YP_006922069.1| - 0.46 10.3 9.2 0.85 9.4 1.1 2.1 2 0 0 2 2 2 0 Tropomyosin like XhlA PF10779.4 gi|410669698|ref|YP_006922069.1| - 0.57 10.1 2.5 1.1 9.2 0.0 2.2 2 0 0 2 2 2 0 Haemolysin XhlA Mnd1 PF03962.10 gi|410669698|ref|YP_006922069.1| - 1.3 8.6 7.5 3.6 7.1 0.4 2.1 2 0 0 2 2 2 0 Mnd1 family YlbD_coat PF14071.1 gi|410669698|ref|YP_006922069.1| - 2.3 8.2 6.3 2.2 8.3 0.4 2.1 2 0 0 2 2 2 0 Putative coat protein DP PF08781.5 gi|410669698|ref|YP_006922069.1| - 2.3 7.8 6.6 0.42 10.2 1.9 1.7 2 0 0 2 2 2 0 Transcription factor DP bZIP_Maf PF03131.12 gi|410669698|ref|YP_006922069.1| - 2.4 8.5 7.7 1.6 9.0 0.9 2.2 2 0 0 2 2 2 0 bZIP Maf transcription factor Spc24 PF08286.6 gi|410669698|ref|YP_006922069.1| - 2.5 7.8 6.6 2.1 8.0 0.5 2.1 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 ADIP PF11559.3 gi|410669698|ref|YP_006922069.1| - 2.6 7.9 9.3 0.6 10.0 0.8 2.1 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DivIVA PF05103.8 gi|410669698|ref|YP_006922069.1| - 3.1 7.8 8.1 2.1 8.4 0.9 2.1 2 0 0 2 2 2 0 DivIVA protein Ax_dynein_light PF10211.4 gi|410669698|ref|YP_006922069.1| - 3.6 7.3 9.6 2 8.1 1.8 2.0 2 0 0 2 2 2 0 Axonemal dynein light chain PspB PF06667.7 gi|410669698|ref|YP_006922069.1| - 3.8 7.5 6.1 1.2 9.0 0.2 2.4 2 1 0 2 2 2 0 Phage shock protein B TBPIP PF07106.8 gi|410669698|ref|YP_006922069.1| - 5.8 6.4 8.4 5.8 6.4 1.0 2.1 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF4200 PF13863.1 gi|410669698|ref|YP_006922069.1| - 6.5 6.7 10.9 8.2 6.4 2.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) FlxA PF14282.1 gi|410669698|ref|YP_006922069.1| - 9.8 6.1 12.4 6.6 6.7 0.7 2.3 2 0 0 2 2 2 0 FlxA-like protein Ribosomal_L18ae PF01775.12 gi|410669699|ref|YP_006922070.1| - 4.1e-11 42.8 0.3 4.4e-11 42.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain eIF-6 PF01912.13 gi|410669700|ref|YP_006922071.1| - 6.1e-66 221.3 0.6 7.4e-66 221.0 0.5 1.1 1 0 0 1 1 1 1 eIF-6 family DUF2973 PF11189.3 gi|410669700|ref|YP_006922071.1| - 0.13 12.0 0.0 0.41 10.4 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2973) Ribosomal_L31e PF01198.14 gi|410669701|ref|YP_006922072.1| - 6.5e-27 93.0 0.7 7.5e-27 92.8 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.15 gi|410669702|ref|YP_006922073.1| - 5.3e-20 70.6 6.6 6.4e-20 70.3 4.5 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein PGAMP PF07644.6 gi|410669702|ref|YP_006922073.1| - 0.06 13.0 0.1 0.086 12.5 0.1 1.3 1 0 0 1 1 1 0 Planctomycete PGAMP Asn_synthase PF00733.16 gi|410669703|ref|YP_006922074.1| - 4.2e-07 29.7 0.2 3.6e-06 26.6 0.0 2.0 1 1 0 2 2 2 1 Asparagine synthase QueC PF06508.8 gi|410669703|ref|YP_006922074.1| - 0.0038 16.5 0.0 0.011 15.0 0.0 1.6 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|410669703|ref|YP_006922074.1| - 0.0088 15.4 0.0 0.016 14.5 0.0 1.5 1 0 0 1 1 1 1 ATP-binding region tRNA_Me_trans PF03054.11 gi|410669703|ref|YP_006922074.1| - 0.021 13.3 0.0 0.03 12.8 0.0 1.4 1 0 0 1 1 1 0 tRNA methyl transferase Wzz PF02706.10 gi|410669703|ref|YP_006922074.1| - 0.11 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Chain length determinant protein AAA_17 PF13207.1 gi|410669703|ref|YP_006922074.1| - 0.13 13.0 0.1 0.3 11.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain dsDNA_bind PF01984.15 gi|410669704|ref|YP_006922075.1| - 3.4e-28 97.7 22.0 4.5e-28 97.3 15.3 1.1 1 0 0 1 1 1 1 Double-stranded DNA-binding domain BsuBI_PstI_RE PF06616.6 gi|410669704|ref|YP_006922075.1| - 0.032 13.0 3.4 0.039 12.7 2.3 1.1 1 0 0 1 1 1 0 BsuBI/PstI restriction endonuclease C-terminus SASP PF00269.15 gi|410669704|ref|YP_006922075.1| - 0.041 13.7 0.7 0.89 9.4 0.5 2.6 1 1 0 1 1 1 0 Small, acid-soluble spore proteins, alpha/beta type 4HB_MCP_1 PF12729.2 gi|410669704|ref|YP_006922075.1| - 0.041 13.2 3.9 0.075 12.3 2.7 1.6 1 1 0 1 1 1 0 Four helix bundle sensory module for signal transduction Caps_synth_GfcC PF06251.6 gi|410669704|ref|YP_006922075.1| - 0.045 12.9 11.0 0.054 12.6 7.6 1.1 1 0 0 1 1 1 0 Capsule biosynthesis GfcC DUF603 PF04645.7 gi|410669704|ref|YP_006922075.1| - 0.057 13.3 1.1 0.065 13.1 0.8 1.2 1 1 0 1 1 1 0 Protein of unknown function, DUF603 SMC_N PF02463.14 gi|410669704|ref|YP_006922075.1| - 0.1 11.7 2.9 0.12 11.6 2.0 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain DUF4610 PF15384.1 gi|410669704|ref|YP_006922075.1| - 0.13 11.7 2.6 0.15 11.5 1.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4610) DUF3456 PF11938.3 gi|410669704|ref|YP_006922075.1| - 0.14 12.1 2.0 0.16 11.9 1.4 1.1 1 0 0 1 1 1 0 TLR4 regulator and MIR-interacting MSAP Phasin PF05597.6 gi|410669704|ref|YP_006922075.1| - 0.26 11.0 7.5 0.3 10.8 4.8 1.3 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF4085 PF13315.1 gi|410669704|ref|YP_006922075.1| - 0.67 9.2 3.9 0.95 8.7 2.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4085) MCPVI PF02993.9 gi|410669704|ref|YP_006922075.1| - 0.9 9.6 7.1 1 9.4 4.9 1.2 1 0 0 1 1 1 0 Minor capsid protein VI Peptidase_C58 PF03543.9 gi|410669704|ref|YP_006922075.1| - 2 7.8 6.4 2.4 7.5 4.4 1.2 1 0 0 1 1 1 0 Yersinia/Haemophilus virulence surface antigen CCDC-167 PF15188.1 gi|410669704|ref|YP_006922075.1| - 2.8 7.9 8.5 1.2 9.1 3.5 2.1 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 HemY_N PF07219.8 gi|410669704|ref|YP_006922075.1| - 5.9 6.4 7.0 8.2 6.0 4.7 1.4 1 1 0 1 1 1 0 HemY protein N-terminus Ribosomal_S19e PF01090.14 gi|410669705|ref|YP_006922076.1| - 2.3e-58 195.5 0.0 2.6e-58 195.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e Ribosomal_S25 PF03297.10 gi|410669705|ref|YP_006922076.1| - 0.071 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 S25 ribosomal protein GntR PF00392.16 gi|410669705|ref|YP_006922076.1| - 0.13 11.7 0.1 0.3 10.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|410669705|ref|YP_006922076.1| - 0.13 11.9 0.0 12 5.6 0.0 2.4 2 0 0 2 2 2 0 MarR family Adenylsucc_synt PF00709.16 gi|410669706|ref|YP_006922077.1| - 2.4e-159 530.5 0.0 2.7e-159 530.3 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase DUF457 PF04307.9 gi|410669709|ref|YP_006922080.1| - 1.6e-11 43.8 15.1 6.2e-11 41.8 10.5 1.8 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|410669709|ref|YP_006922080.1| - 0.012 15.2 0.4 0.018 14.7 0.3 1.2 1 0 0 1 1 1 0 Zinc dependent phospholipase C DUF4131 PF13567.1 gi|410669709|ref|YP_006922080.1| - 1.6 8.1 9.8 3.8 6.8 1.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Abi PF02517.11 gi|410669710|ref|YP_006922081.1| - 1.2e-13 51.0 26.5 1.1e-10 41.4 18.3 3.0 1 1 0 1 1 1 1 CAAX protease self-immunity DUF1616 PF07760.6 gi|410669711|ref|YP_006922082.1| - 8.7e-85 284.3 1.2 9.8e-85 284.1 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF2273 PF10031.4 gi|410669711|ref|YP_006922082.1| - 0.038 13.6 1.8 0.12 11.9 1.2 1.9 1 0 0 1 1 1 0 Small integral membrane protein (DUF2273) DUF4153 PF13687.1 gi|410669712|ref|YP_006922083.1| - 0.0076 15.7 0.1 0.0077 15.7 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4153) 60KD_IMP PF02096.15 gi|410669712|ref|YP_006922083.1| - 0.12 12.0 0.2 0.13 11.9 0.2 1.0 1 0 0 1 1 1 0 60Kd inner membrane protein Polysacc_synt_3 PF13440.1 gi|410669713|ref|YP_006922084.1| - 6.6e-12 45.4 50.8 2.6e-08 33.6 18.3 2.0 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|410669713|ref|YP_006922084.1| - 6.6e-10 38.9 41.4 5e-06 26.3 4.1 4.2 3 1 1 4 4 4 3 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.12 gi|410669713|ref|YP_006922084.1| - 1.7e-08 34.1 36.9 1.7e-08 34.1 25.6 2.2 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein DUF3367 PF11847.3 gi|410669714|ref|YP_006922085.1| - 2.4 5.9 9.2 5.1 4.9 6.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3367) Asn_synthase PF00733.16 gi|410669715|ref|YP_006922086.1| - 4.5e-54 183.6 0.1 6.1e-54 183.1 0.1 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|410669715|ref|YP_006922086.1| - 7.5e-46 154.9 0.0 1.5e-45 153.9 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|410669715|ref|YP_006922086.1| - 3.1e-43 146.9 0.0 5.2e-43 146.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|410669715|ref|YP_006922086.1| - 1.6e-05 23.7 0.0 0.076 11.7 0.0 2.4 1 1 1 2 2 2 2 Glutamine amidotransferases class-II DUF3700 PF12481.3 gi|410669715|ref|YP_006922086.1| - 0.00018 20.8 0.0 0.00035 19.8 0.0 1.4 1 0 0 1 1 1 1 Aluminium induced protein NAD_synthase PF02540.12 gi|410669715|ref|YP_006922086.1| - 0.13 11.1 0.0 0.22 10.3 0.0 1.3 1 0 0 1 1 1 0 NAD synthase QueC PF06508.8 gi|410669715|ref|YP_006922086.1| - 0.13 11.5 0.0 0.27 10.4 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Acetyltransf_6 PF13480.1 gi|410669716|ref|YP_006922087.1| - 7.8e-08 32.3 0.0 1.2e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|410669716|ref|YP_006922087.1| - 6.9e-05 21.7 0.0 0.00018 20.3 0.0 1.6 2 0 0 2 2 2 1 FemAB family SIMPL PF04402.9 gi|410669718|ref|YP_006922089.1| - 9.1e-48 162.8 11.9 1.1e-47 162.5 8.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Sigma_reg_N PF13800.1 gi|410669718|ref|YP_006922089.1| - 0.095 12.7 0.8 1.1 9.3 0.2 2.4 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF4179 PF13786.1 gi|410669718|ref|YP_006922089.1| - 0.62 10.3 4.9 0.19 11.9 0.6 2.3 2 2 1 3 3 3 0 Domain of unknown function (DUF4179) Gate PF07670.9 gi|410669719|ref|YP_006922090.1| - 5.3e-08 32.7 19.1 0.00017 21.4 3.6 2.9 2 1 0 2 2 2 2 Nucleoside recognition PUCC PF03209.10 gi|410669720|ref|YP_006922091.1| - 0.054 12.2 1.3 0.054 12.2 0.9 1.0 1 0 0 1 1 1 0 PUCC protein DUF3099 PF11298.3 gi|410669720|ref|YP_006922091.1| - 0.21 11.3 1.2 0.21 11.3 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3099) TPR_12 PF13424.1 gi|410669721|ref|YP_006922092.1| - 2.9e-40 136.0 34.8 3.5e-08 33.2 2.8 10.7 6 3 4 11 11 11 10 Tetratricopeptide repeat TPR_10 PF13374.1 gi|410669721|ref|YP_006922092.1| - 2.2e-18 65.5 8.4 0.032 14.1 0.0 11.5 12 0 0 12 12 12 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|410669721|ref|YP_006922092.1| - 3.4e-15 54.6 50.0 0.094 12.6 0.3 13.3 13 1 1 14 14 14 6 Tetratricopeptide repeat TPR_14 PF13428.1 gi|410669721|ref|YP_006922092.1| - 2.9e-13 49.1 10.1 0.4 11.4 0.0 11.8 11 3 3 14 14 12 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|410669721|ref|YP_006922092.1| - 8.9e-13 47.0 48.3 0.0073 16.0 2.0 12.9 13 2 0 13 13 11 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|410669721|ref|YP_006922092.1| - 8.4e-12 43.9 34.9 0.0091 15.7 0.2 12.2 14 0 0 14 14 13 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|410669721|ref|YP_006922092.1| - 9.3e-11 40.8 38.6 0.077 12.6 0.0 12.1 12 1 0 12 12 12 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|410669721|ref|YP_006922092.1| - 4.8e-10 38.9 47.3 0.026 14.1 7.3 10.2 5 4 6 11 11 11 5 TPR repeat TPR_17 PF13431.1 gi|410669721|ref|YP_006922092.1| - 4.8e-10 38.8 12.5 0.037 14.2 0.0 10.5 12 1 0 12 12 10 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|410669721|ref|YP_006922092.1| - 9.5e-10 38.6 26.6 0.0015 18.8 0.0 9.7 9 4 2 11 11 11 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|410669721|ref|YP_006922092.1| - 2.1e-06 28.2 17.6 0.14 12.8 0.0 7.7 5 2 2 8 8 8 2 Tetratricopeptide repeat PPR PF01535.15 gi|410669721|ref|YP_006922092.1| - 1.3e-05 24.8 9.4 6 7.0 0.0 7.7 8 0 0 8 8 7 1 PPR repeat TPR_6 PF13174.1 gi|410669721|ref|YP_006922092.1| - 4.6e-05 23.5 30.5 0.42 11.1 0.0 10.1 10 2 0 10 10 9 1 Tetratricopeptide repeat RPN7 PF10602.4 gi|410669721|ref|YP_006922092.1| - 0.0021 17.4 20.2 0.05 12.9 0.1 5.7 4 1 1 5 5 5 2 26S proteasome subunit RPN7 TPR_9 PF13371.1 gi|410669721|ref|YP_006922092.1| - 0.0076 16.0 6.3 3.7 7.4 0.0 5.3 7 0 0 7 7 7 2 Tetratricopeptide repeat DUF627 PF04781.7 gi|410669721|ref|YP_006922092.1| - 0.012 15.1 0.2 0.012 15.1 0.1 4.0 5 0 0 5 5 5 0 Protein of unknown function (DUF627) DUF2225 PF09986.4 gi|410669721|ref|YP_006922092.1| - 0.023 14.1 18.5 1.5 8.2 1.6 5.4 2 1 3 6 6 6 0 Uncharacterized protein conserved in bacteria (DUF2225) ApoLp-III PF07464.6 gi|410669721|ref|YP_006922092.1| - 0.11 12.5 3.6 0.22 11.5 1.1 2.5 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) DUF778 PF05608.7 gi|410669721|ref|YP_006922092.1| - 0.16 11.9 0.4 3.8 7.4 0.0 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF778) ydhR PF08803.6 gi|410669721|ref|YP_006922092.1| - 0.16 12.0 3.0 3.5 7.7 0.1 3.3 2 1 1 3 3 3 0 Putative mono-oxygenase ydhR NYAP_C PF15452.1 gi|410669722|ref|YP_006922093.1| - 0.13 11.2 0.4 0.15 11.0 0.2 1.1 1 0 0 1 1 1 0 Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter DUF457 PF04307.9 gi|410669724|ref|YP_006922095.1| - 1e-11 44.4 6.7 1.2e-11 44.1 4.6 1.0 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) PAS_4 PF08448.5 gi|410669725|ref|YP_006922096.1| - 4.6e-43 145.7 0.0 9.2e-21 73.9 0.0 4.3 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.1 gi|410669725|ref|YP_006922096.1| - 3.9e-32 110.7 0.4 8.3e-10 38.9 0.0 4.4 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.21 gi|410669725|ref|YP_006922096.1| - 6.1e-30 103.2 0.1 1.5e-29 101.9 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|410669725|ref|YP_006922096.1| - 3.4e-26 91.2 0.0 2.7e-13 49.6 0.0 4.6 4 0 0 4 4 4 2 PAS fold 5TM-5TMR_LYT PF07694.7 gi|410669725|ref|YP_006922096.1| - 3.8e-26 91.4 15.1 5.9e-26 90.8 10.5 1.3 1 0 0 1 1 1 1 5TMR of 5TMR-LYT HisKA PF00512.20 gi|410669725|ref|YP_006922096.1| - 7.8e-21 73.8 0.3 6.2e-20 70.9 0.0 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|410669725|ref|YP_006922096.1| - 3.5e-20 71.0 0.0 1.7e-05 24.4 0.0 3.9 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|410669725|ref|YP_006922096.1| - 1.4e-07 31.5 0.0 0.34 11.0 0.0 4.0 4 0 0 4 4 4 2 PAS fold PAS_10 PF13596.1 gi|410669725|ref|YP_006922096.1| - 6.3e-07 29.6 0.0 0.001 19.2 0.0 3.4 3 0 0 3 3 3 1 PAS domain HATPase_c_5 PF14501.1 gi|410669725|ref|YP_006922096.1| - 0.00098 18.7 0.1 0.0022 17.6 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|410669725|ref|YP_006922096.1| - 0.0053 16.4 0.1 0.014 15.0 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF417 PF04224.7 gi|410669725|ref|YP_006922096.1| - 0.016 14.5 0.7 0.042 13.2 0.5 1.7 1 0 0 1 1 1 0 Protein of unknown function, DUF417 Cache_3 PF14827.1 gi|410669725|ref|YP_006922096.1| - 0.018 14.9 0.0 2.6 7.9 0.0 2.5 2 0 0 2 2 2 0 Sensory domain of two-component sensor kinase DUF817 PF05675.7 gi|410669725|ref|YP_006922096.1| - 0.34 10.2 5.2 0.47 9.8 2.8 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF817) DUF1434 PF07254.7 gi|410669725|ref|YP_006922096.1| - 1.5 8.5 3.9 1.5 8.5 0.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1434) DUF457 PF04307.9 gi|410669726|ref|YP_006922097.1| - 0.075 12.3 0.2 0.13 11.5 0.2 1.6 1 1 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) Glycos_transf_2 PF00535.21 gi|410669728|ref|YP_006922099.1| - 4.4e-18 65.5 0.1 5.8e-18 65.1 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|410669728|ref|YP_006922099.1| - 6.6e-07 29.3 0.1 8.9e-07 28.9 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|410669728|ref|YP_006922099.1| - 0.0068 16.7 0.2 0.011 15.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|410669728|ref|YP_006922099.1| - 0.068 12.4 0.0 0.14 11.4 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 21 Abi PF02517.11 gi|410669730|ref|YP_006922101.1| - 1.6e-18 66.5 6.9 1.6e-18 66.5 4.8 2.7 3 0 0 3 3 3 2 CAAX protease self-immunity DUF1616 PF07760.6 gi|410669731|ref|YP_006922102.1| - 5.2e-104 347.3 2.1 5.9e-104 347.2 1.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF2142 PF09913.4 gi|410669731|ref|YP_006922102.1| - 0.02 13.5 0.3 0.02 13.5 0.2 2.6 1 1 2 3 3 3 0 Predicted membrane protein (DUF2142) DUF4064 PF13273.1 gi|410669731|ref|YP_006922102.1| - 0.1 12.7 0.2 0.1 12.7 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) 7TMR-DISM_7TM PF07695.6 gi|410669731|ref|YP_006922102.1| - 5.3 6.6 17.7 0.95 9.0 0.2 3.0 2 1 1 3 3 3 0 7TM diverse intracellular signalling TRAM PF01938.15 gi|410669733|ref|YP_006922104.1| - 0.013 15.2 0.1 0.15 11.8 0.0 2.4 2 1 0 2 2 2 0 TRAM domain CarboxypepD_reg PF13620.1 gi|410669733|ref|YP_006922104.1| - 0.11 12.5 1.9 0.58 10.2 0.1 2.7 1 1 2 3 3 3 0 Carboxypeptidase regulatory-like domain Membrane_bind PF14564.1 gi|410669733|ref|YP_006922104.1| - 0.12 12.5 0.2 0.19 11.8 0.2 1.4 1 0 0 1 1 1 0 Membrane binding DUF457 PF04307.9 gi|410669734|ref|YP_006922105.1| - 2.4e-16 59.4 7.8 3e-16 59.1 5.4 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) P12 PF12669.2 gi|410669734|ref|YP_006922105.1| - 1.3 9.2 3.3 4.7 7.4 0.9 2.3 2 0 0 2 2 2 0 Virus attachment protein p12 family OrfB_IS605 PF01385.14 gi|410669737|ref|YP_006922108.1| - 5.6e-42 143.6 1.2 8.2e-42 143.1 0.9 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|410669737|ref|YP_006922108.1| - 1.3e-19 69.6 0.1 3e-19 68.4 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|410669737|ref|YP_006922108.1| - 1e-16 59.9 0.0 4.3e-16 57.9 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Nepo_coat_C PF03688.9 gi|410669737|ref|YP_006922108.1| - 0.0028 17.3 0.1 0.76 9.3 0.0 2.5 2 0 0 2 2 2 2 Nepovirus coat protein, C-terminal domain zf-piccolo PF05715.8 gi|410669737|ref|YP_006922108.1| - 0.012 15.5 1.5 0.03 14.3 1.0 1.6 1 0 0 1 1 1 0 Piccolo Zn-finger DUF2296 PF10058.4 gi|410669737|ref|YP_006922108.1| - 0.028 14.1 0.7 0.071 12.8 0.5 1.6 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-RanBP PF00641.13 gi|410669737|ref|YP_006922108.1| - 3.9 6.6 6.2 7.3 5.7 0.8 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Glycos_transf_2 PF00535.21 gi|410669738|ref|YP_006922109.1| - 4.8e-19 68.6 0.0 7.4e-19 68.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|410669738|ref|YP_006922109.1| - 1.4e-06 28.2 0.1 1.9e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|410669738|ref|YP_006922109.1| - 0.00026 21.2 0.0 0.00047 20.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF374 PF04028.8 gi|410669738|ref|YP_006922109.1| - 0.019 14.1 0.0 0.044 13.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF374) Glyco_transf_21 PF13506.1 gi|410669738|ref|YP_006922109.1| - 0.059 12.6 0.3 0.34 10.1 0.0 2.3 2 0 0 2 2 2 0 Glycosyl transferase family 21 Glycos_transf_1 PF00534.15 gi|410669740|ref|YP_006922111.1| - 3.2e-25 88.5 0.0 4.4e-25 88.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|410669740|ref|YP_006922111.1| - 6.2e-19 68.4 0.0 1.1e-18 67.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|410669740|ref|YP_006922111.1| - 4e-08 33.4 0.0 6.7e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|410669740|ref|YP_006922111.1| - 0.0009 19.0 0.0 0.0024 17.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Prenyltrans_1 PF13243.1 gi|410669741|ref|YP_006922112.1| - 4.6e-15 55.5 0.0 5.8e-05 23.0 0.0 3.4 1 1 2 3 3 3 3 Prenyltransferase-like Prenyltrans_2 PF13249.1 gi|410669741|ref|YP_006922112.1| - 1.2e-08 35.2 0.0 0.0015 18.9 0.0 2.8 1 1 2 3 3 3 3 Prenyltransferase-like Prenyltrans PF00432.16 gi|410669741|ref|YP_006922112.1| - 7.4e-05 22.2 0.0 0.12 11.9 0.0 2.7 2 0 0 2 2 2 2 Prenyltransferase and squalene oxidase repeat Pec_lyase PF09492.5 gi|410669741|ref|YP_006922112.1| - 0.0027 16.9 0.0 0.39 9.8 0.0 2.3 2 0 0 2 2 2 2 Pectic acid lyase Alpha_E3_glycop PF01563.11 gi|410669741|ref|YP_006922112.1| - 0.11 12.2 0.0 0.39 10.5 0.0 2.0 2 0 0 2 2 2 0 Alphavirus E3 glycoprotein GFO_IDH_MocA PF01408.17 gi|410669742|ref|YP_006922113.1| - 2.2e-21 76.5 0.5 4.7e-21 75.5 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold ADH_zinc_N PF00107.21 gi|410669742|ref|YP_006922113.1| - 4.3e-19 68.3 0.0 1.1e-18 66.9 0.0 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|410669742|ref|YP_006922113.1| - 1.2e-05 24.7 0.1 3.4e-05 23.2 0.1 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GFO_IDH_MocA_C PF02894.12 gi|410669742|ref|YP_006922113.1| - 0.00049 19.8 0.0 0.0011 18.7 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ADH_N PF08240.7 gi|410669742|ref|YP_006922113.1| - 0.0021 17.7 0.7 0.0089 15.7 0.0 2.1 1 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain TrkA_N PF02254.13 gi|410669742|ref|YP_006922113.1| - 0.0056 16.6 0.2 0.022 14.7 0.1 2.1 1 0 0 1 1 1 1 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|410669742|ref|YP_006922113.1| - 0.0075 15.8 0.1 0.024 14.2 0.1 1.8 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|410669742|ref|YP_006922113.1| - 0.013 14.6 0.1 0.032 13.3 0.1 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|410669742|ref|YP_006922113.1| - 0.02 15.2 0.5 0.18 12.1 0.0 2.3 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|410669742|ref|YP_006922113.1| - 0.023 14.3 0.7 0.15 11.7 0.1 2.6 2 1 1 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_18 PF12847.2 gi|410669742|ref|YP_006922113.1| - 0.058 13.9 0.0 0.24 12.0 0.0 2.1 1 0 0 1 1 1 0 Methyltransferase domain Cag12 PF13117.1 gi|410669743|ref|YP_006922114.1| - 0.071 13.0 0.1 0.6 10.0 0.0 2.4 2 0 0 2 2 2 0 Cag pathogenicity island protein Cag12 BACK PF07707.10 gi|410669743|ref|YP_006922114.1| - 0.22 11.3 0.9 1.4 8.7 0.1 2.2 2 0 0 2 2 2 0 BTB And C-terminal Kelch PGA_cap PF09587.5 gi|410669744|ref|YP_006922115.1| - 6.9e-69 231.9 0.0 9.2e-69 231.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap Glycos_transf_2 PF00535.21 gi|410669745|ref|YP_006922116.1| - 8.5e-24 84.1 1.3 1.3e-23 83.4 0.9 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|410669745|ref|YP_006922116.1| - 6.1e-19 68.7 0.0 1.2e-18 67.7 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|410669745|ref|YP_006922116.1| - 3.8e-16 59.0 0.6 5.2e-16 58.5 0.4 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|410669745|ref|YP_006922116.1| - 2.1e-09 37.3 0.0 3.2e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|410669745|ref|YP_006922116.1| - 3.5e-09 36.1 0.0 5.3e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_transf_7C PF02709.9 gi|410669745|ref|YP_006922116.1| - 4.2e-05 22.9 0.3 9.3e-05 21.8 0.2 1.5 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_4 PF13704.1 gi|410669745|ref|YP_006922116.1| - 0.097 12.9 0.3 0.27 11.5 0.1 1.8 2 0 0 2 2 2 0 Glycosyl transferase family 2 Glycos_transf_1 PF00534.15 gi|410669746|ref|YP_006922117.1| - 3.9e-40 137.0 0.0 2.7e-39 134.3 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|410669746|ref|YP_006922117.1| - 5.4e-18 65.4 0.0 1e-17 64.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|410669746|ref|YP_006922117.1| - 1.6e-15 57.6 0.0 2.3e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|410669746|ref|YP_006922117.1| - 3.6e-09 36.6 0.0 5.6e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|410669746|ref|YP_006922117.1| - 9.6e-07 28.9 0.0 2.2e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|410669746|ref|YP_006922117.1| - 2.5e-06 27.3 0.6 5.2e-06 26.3 0.4 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_3 PF13528.1 gi|410669746|ref|YP_006922117.1| - 0.015 14.5 0.0 0.028 13.6 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 1 Glyco_transf_5 PF08323.6 gi|410669746|ref|YP_006922117.1| - 0.082 12.3 0.0 0.23 10.9 0.0 1.8 1 1 0 1 1 1 0 Starch synthase catalytic domain Glycos_transf_1 PF00534.15 gi|410669747|ref|YP_006922118.1| - 3.3e-37 127.5 0.0 6.3e-37 126.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|410669747|ref|YP_006922118.1| - 2.2e-14 53.7 0.0 3.6e-14 53.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|410669747|ref|YP_006922118.1| - 2.3e-09 37.3 0.0 4.2e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Polysacc_synt PF01943.12 gi|410669749|ref|YP_006922120.1| - 4.6e-30 104.8 27.2 4.6e-30 104.8 18.8 2.7 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|410669749|ref|YP_006922120.1| - 3e-24 85.4 20.2 3e-24 85.4 14.0 4.1 1 1 4 5 5 5 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|410669749|ref|YP_006922120.1| - 1.2e-14 54.4 22.8 1.2e-14 54.4 15.8 3.1 1 1 2 3 3 3 2 Polysaccharide biosynthesis protein MatE PF01554.13 gi|410669749|ref|YP_006922120.1| - 4.1e-11 42.7 12.3 4.1e-11 42.7 8.5 3.8 3 2 0 3 3 3 1 MatE MVIN PF03023.9 gi|410669749|ref|YP_006922120.1| - 5.4e-11 41.5 34.4 1.6e-10 39.9 23.8 1.9 1 1 0 1 1 1 1 MviN-like protein DUF1453 PF07301.6 gi|410669749|ref|YP_006922120.1| - 0.00025 20.9 6.8 0.00025 20.9 4.7 3.6 3 1 0 3 3 3 1 Protein of unknown function (DUF1453) DUF983 PF06170.7 gi|410669749|ref|YP_006922120.1| - 0.18 11.9 0.2 0.18 11.9 0.2 3.7 3 1 2 5 5 5 0 Protein of unknown function (DUF983) PapD_C PF02753.12 gi|410669750|ref|YP_006922121.1| - 0.048 13.5 0.0 0.057 13.2 0.0 1.1 1 0 0 1 1 1 0 Pili assembly chaperone PapD, C-terminal domain Epimerase PF01370.16 gi|410669751|ref|YP_006922122.1| - 2.8e-56 190.5 0.0 3.4e-56 190.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|410669751|ref|YP_006922122.1| - 3.2e-24 85.1 0.0 4.2e-24 84.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|410669751|ref|YP_006922122.1| - 2.1e-17 62.9 0.1 7.6e-17 61.1 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|410669751|ref|YP_006922122.1| - 1.2e-15 57.1 0.0 5.7e-13 48.3 0.0 2.2 1 1 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|410669751|ref|YP_006922122.1| - 2.8e-11 42.8 0.0 5.8e-11 41.8 0.0 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|410669751|ref|YP_006922122.1| - 1.1e-09 38.6 0.0 1.6e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|410669751|ref|YP_006922122.1| - 0.00093 19.1 0.2 0.015 15.2 0.2 2.4 2 1 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|410669751|ref|YP_006922122.1| - 0.00097 18.4 0.1 0.002 17.3 0.0 1.5 2 0 0 2 2 2 1 NmrA-like family TrkA_N PF02254.13 gi|410669751|ref|YP_006922122.1| - 0.014 15.3 0.1 0.035 14.1 0.1 1.6 1 1 0 1 1 1 0 TrkA-N domain Ldh_1_N PF00056.18 gi|410669751|ref|YP_006922122.1| - 0.024 14.4 0.1 0.043 13.6 0.1 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Epimerase_Csub PF13950.1 gi|410669751|ref|YP_006922122.1| - 0.038 13.9 0.0 0.066 13.1 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit NAD_binding_7 PF13241.1 gi|410669751|ref|YP_006922122.1| - 0.057 13.6 0.2 0.16 12.2 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding KR PF08659.5 gi|410669751|ref|YP_006922122.1| - 0.079 12.6 0.1 0.5 9.9 0.0 2.0 2 0 0 2 2 2 0 KR domain DUF3368 PF11848.3 gi|410669751|ref|YP_006922122.1| - 0.088 12.3 0.3 0.36 10.4 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3368) SpoVAD PF07451.6 gi|410669751|ref|YP_006922122.1| - 0.13 10.7 0.1 0.31 9.4 0.1 1.6 2 0 0 2 2 2 0 Stage V sporulation protein AD (SpoVAD) NAD_binding_3 PF03447.11 gi|410669751|ref|YP_006922122.1| - 0.13 12.6 0.0 0.24 11.8 0.0 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|410669752|ref|YP_006922123.1| - 1.8e-19 69.8 0.1 1.1e-18 67.2 0.0 2.3 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.14 gi|410669752|ref|YP_006922123.1| - 3.6e-14 52.7 0.0 8.6e-14 51.5 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_N PF03721.9 gi|410669752|ref|YP_006922123.1| - 2.4e-13 49.9 0.0 1.5e-12 47.3 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|410669752|ref|YP_006922123.1| - 0.013 15.2 0.0 1.9 8.2 0.0 2.5 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|410669753|ref|YP_006922124.1| - 9.4e-54 181.6 0.0 1.7e-53 180.7 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|410669753|ref|YP_006922124.1| - 5.8e-29 100.1 0.1 1.1e-28 99.2 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|410669753|ref|YP_006922124.1| - 1.1e-21 76.9 0.1 5.2e-21 74.7 0.0 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|410669753|ref|YP_006922124.1| - 8.3e-07 28.9 0.0 3.4e-06 27.0 0.0 2.1 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|410669753|ref|YP_006922124.1| - 7.4e-05 22.5 0.0 0.011 15.4 0.0 2.8 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|410669753|ref|YP_006922124.1| - 0.00029 20.5 0.0 0.00053 19.6 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|410669753|ref|YP_006922124.1| - 0.00034 19.8 0.2 0.021 13.9 0.0 2.8 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|410669753|ref|YP_006922124.1| - 0.00052 19.4 0.0 0.00089 18.7 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.13 gi|410669753|ref|YP_006922124.1| - 0.0053 16.7 0.1 0.026 14.5 0.0 2.3 3 0 0 3 3 3 1 TrkA-N domain Pyr_redox PF00070.22 gi|410669753|ref|YP_006922124.1| - 0.011 16.0 0.1 0.048 14.0 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Methyltransf_31 PF13847.1 gi|410669753|ref|YP_006922124.1| - 0.018 14.6 0.0 0.059 12.9 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain AlaDh_PNT_C PF01262.16 gi|410669753|ref|YP_006922124.1| - 0.027 14.0 0.0 0.092 12.3 0.0 1.9 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.12 gi|410669753|ref|YP_006922124.1| - 0.042 14.2 0.0 1.1 9.7 0.0 2.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent GIDA PF01134.17 gi|410669753|ref|YP_006922124.1| - 0.096 11.5 0.0 0.28 9.9 0.0 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A Epimerase_2 PF02350.14 gi|410669754|ref|YP_006922125.1| - 1.3e-110 369.4 0.0 1.5e-110 369.2 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_4 PF13579.1 gi|410669754|ref|YP_006922125.1| - 0.00056 20.0 0.0 0.0017 18.5 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|410669754|ref|YP_006922125.1| - 0.0048 16.7 0.0 0.0093 15.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like DUF354 PF04007.7 gi|410669754|ref|YP_006922125.1| - 0.0068 15.3 0.0 0.013 14.3 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF354) Lipase_GDSL_2 PF13472.1 gi|410669754|ref|YP_006922125.1| - 0.081 13.0 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family MGDG_synth PF06925.6 gi|410669754|ref|YP_006922125.1| - 0.097 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Monogalactosyldiacylglycerol (MGDG) synthase Epimerase PF01370.16 gi|410669755|ref|YP_006922126.1| - 5.1e-45 153.7 0.0 6.1e-45 153.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|410669755|ref|YP_006922126.1| - 5.9e-23 80.9 0.0 7.3e-23 80.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|410669755|ref|YP_006922126.1| - 3e-17 62.4 0.0 2.7e-16 59.3 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|410669755|ref|YP_006922126.1| - 9.2e-16 57.5 0.0 1.2e-15 57.2 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|410669755|ref|YP_006922126.1| - 2.3e-14 52.9 0.1 2.2e-12 46.4 0.1 2.3 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|410669755|ref|YP_006922126.1| - 7.1e-12 45.7 0.0 9e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|410669755|ref|YP_006922126.1| - 5.7e-06 26.3 0.1 3.1e-05 23.9 0.0 2.0 2 0 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|410669755|ref|YP_006922126.1| - 1.3e-05 24.6 0.0 2e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|410669755|ref|YP_006922126.1| - 0.023 14.3 0.1 0.1 12.2 0.1 1.9 1 1 0 1 1 1 0 KR domain Saccharop_dh PF03435.13 gi|410669755|ref|YP_006922126.1| - 0.033 13.1 0.0 0.05 12.5 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|410669755|ref|YP_006922126.1| - 0.045 13.7 0.1 0.14 12.1 0.0 1.9 2 0 0 2 2 2 0 TrkA-N domain NDUFB10 PF10249.4 gi|410669757|ref|YP_006922128.1| - 0.013 15.6 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase subunit 10 DDE_Tnp_1_6 PF13751.1 gi|410669758|ref|YP_006922129.1| - 0.0034 17.3 0.1 0.0043 17.0 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|410669758|ref|YP_006922129.1| - 0.0058 16.2 0.0 0.0063 16.1 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|410669758|ref|YP_006922129.1| - 0.081 12.4 0.2 0.61 9.5 0.0 1.9 1 1 1 2 2 2 0 Transposase DDE domain DUF445 PF04286.7 gi|410669761|ref|YP_006922132.1| - 0.0025 17.3 0.0 0.0029 17.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF445) C8 PF08742.6 gi|410669765|ref|YP_006922136.1| - 0.36 11.1 4.3 0.4 10.9 2.2 1.7 1 1 0 1 1 1 0 C8 domain UPF0547 PF10571.4 gi|410669766|ref|YP_006922137.1| - 3.4e-05 23.4 9.0 0.015 14.9 1.1 2.3 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|410669766|ref|YP_006922137.1| - 0.0025 17.7 3.8 0.0046 16.8 2.6 1.5 1 1 0 1 1 1 1 Zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|410669766|ref|YP_006922137.1| - 0.0043 16.5 5.2 0.005 16.3 3.6 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain DZR PF12773.2 gi|410669766|ref|YP_006922137.1| - 0.0076 16.0 3.3 0.01 15.6 2.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|410669766|ref|YP_006922137.1| - 0.012 14.7 2.9 0.29 10.4 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|410669766|ref|YP_006922137.1| - 0.023 14.3 2.5 0.025 14.2 1.7 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-CHY PF05495.7 gi|410669766|ref|YP_006922137.1| - 0.058 13.5 2.7 0.063 13.4 1.9 1.1 1 0 0 1 1 1 0 CHY zinc finger IBR PF01485.16 gi|410669766|ref|YP_006922137.1| - 0.061 13.1 3.6 0.06 13.2 2.5 1.1 1 0 0 1 1 1 0 IBR domain zinc_ribbon_4 PF13717.1 gi|410669766|ref|YP_006922137.1| - 0.07 12.8 4.5 1.6 8.4 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|410669766|ref|YP_006922137.1| - 0.074 12.6 5.0 1.2 8.7 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|410669766|ref|YP_006922137.1| - 0.092 12.4 5.2 3.1 7.5 1.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal DUF3039 PF11238.3 gi|410669766|ref|YP_006922137.1| - 0.12 11.8 1.7 0.14 11.5 1.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) zinc_ribbon_2 PF13240.1 gi|410669766|ref|YP_006922137.1| - 0.14 11.6 4.1 2.8 7.5 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ZPR1 PF03367.8 gi|410669766|ref|YP_006922137.1| - 0.54 9.4 3.3 0.32 10.1 0.3 1.8 2 0 0 2 2 2 0 ZPR1 zinc-finger domain Opy2 PF09463.5 gi|410669766|ref|YP_006922137.1| - 0.62 10.1 4.7 0.63 10.1 0.4 2.1 2 0 0 2 2 2 0 Opy2 protein DUF164 PF02591.10 gi|410669766|ref|YP_006922137.1| - 0.99 9.2 5.2 7.7 6.4 0.5 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain Cys_rich_KTR PF14205.1 gi|410669766|ref|YP_006922137.1| - 1 8.8 6.1 1.3 8.4 3.5 1.9 1 1 0 1 1 1 0 Cysteine-rich KTR zf-Paramyx-P PF13008.2 gi|410669766|ref|YP_006922137.1| - 1.7 7.8 10.2 3.4 6.9 1.5 2.1 1 1 1 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein zinc-ribbons_6 PF07191.7 gi|410669766|ref|YP_006922137.1| - 1.8 8.3 6.1 27 4.6 4.2 2.0 1 1 0 1 1 1 0 zinc-ribbons PhnA_Zn_Ribbon PF08274.7 gi|410669766|ref|YP_006922137.1| - 1.9 8.3 9.0 6.4 6.6 0.3 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-C2H2_4 PF13894.1 gi|410669766|ref|YP_006922137.1| - 3.9 8.0 6.6 21 5.7 1.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-H2C2_2 PF13465.1 gi|410669766|ref|YP_006922137.1| - 6.7 7.2 7.8 2.3 8.6 0.8 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Auto_anti-p27 PF06677.7 gi|410669766|ref|YP_006922137.1| - 7.3 6.4 6.6 22 4.9 4.6 1.7 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) IstB_IS21 PF01695.12 gi|410669769|ref|YP_006922140.1| - 8.4e-08 31.8 0.0 2.4e-07 30.3 0.0 1.8 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|410669769|ref|YP_006922140.1| - 1.5e-05 24.5 0.1 0.0017 17.8 0.1 2.4 1 1 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|410669769|ref|YP_006922140.1| - 0.00033 19.8 1.5 0.44 9.6 0.2 2.8 1 1 1 2 2 2 2 KaiC FtsK_SpoIIIE PF01580.13 gi|410669769|ref|YP_006922140.1| - 0.0099 15.3 0.0 0.034 13.6 0.0 1.9 2 1 0 2 2 2 1 FtsK/SpoIIIE family AAA_18 PF13238.1 gi|410669769|ref|YP_006922140.1| - 0.011 16.0 0.0 0.025 14.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|410669769|ref|YP_006922140.1| - 0.011 15.4 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_5 PF07728.9 gi|410669769|ref|YP_006922140.1| - 0.014 15.1 0.0 0.034 13.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|410669769|ref|YP_006922140.1| - 0.015 14.7 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|410669769|ref|YP_006922140.1| - 0.017 15.9 0.1 0.047 14.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|410669769|ref|YP_006922140.1| - 0.021 14.3 0.0 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase KTI12 PF08433.5 gi|410669769|ref|YP_006922140.1| - 0.031 13.4 0.0 0.05 12.7 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MobB PF03205.9 gi|410669769|ref|YP_006922140.1| - 0.041 13.6 0.0 0.14 11.8 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF87 PF01935.12 gi|410669769|ref|YP_006922140.1| - 0.051 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF87 Bac_DnaA PF00308.13 gi|410669769|ref|YP_006922140.1| - 0.088 12.4 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial dnaA protein DUF815 PF05673.8 gi|410669769|ref|YP_006922140.1| - 0.09 11.6 0.0 1.4 7.8 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF815) CobU PF02283.11 gi|410669769|ref|YP_006922140.1| - 0.1 12.0 0.0 0.23 10.8 0.0 1.7 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase PhoH PF02562.11 gi|410669769|ref|YP_006922140.1| - 0.11 11.7 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein ABC_tran PF00005.22 gi|410669769|ref|YP_006922140.1| - 0.11 12.7 0.0 0.4 10.9 0.0 1.7 2 1 0 2 2 1 0 ABC transporter Prim-Pol PF09250.6 gi|410669770|ref|YP_006922141.1| - 5.1e-13 49.3 0.2 1.4e-12 47.8 0.1 1.8 1 0 0 1 1 1 1 Bifunctional DNA primase/polymerase, N-terminal D5_N PF08706.6 gi|410669770|ref|YP_006922141.1| - 0.002 18.2 0.8 0.0073 16.3 0.0 2.2 2 0 0 2 2 2 1 D5 N terminal like Rad17 PF03215.10 gi|410669770|ref|YP_006922141.1| - 0.017 13.8 0.0 0.03 13.0 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein HTH_23 PF13384.1 gi|410669775|ref|YP_006922146.1| - 0.013 15.0 0.3 0.058 13.0 0.0 2.0 2 1 0 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.1 gi|410669775|ref|YP_006922146.1| - 0.028 14.4 0.0 0.082 12.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Flu_B_M2 PF04772.7 gi|410669775|ref|YP_006922146.1| - 0.08 13.0 0.6 0.62 10.1 0.0 2.0 1 1 1 2 2 2 0 Influenza B matrix protein 2 (BM2) Terminase_6 PF03237.10 gi|410669776|ref|YP_006922147.1| - 1.9e-36 125.6 0.0 2.2e-36 125.4 0.0 1.0 1 0 0 1 1 1 1 Terminase-like family AAA_19 PF13245.1 gi|410669776|ref|YP_006922147.1| - 0.12 12.1 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain OrfB_IS605 PF01385.14 gi|410669779|ref|YP_006922150.1| - 3.9e-46 157.2 2.1 3.9e-46 157.2 1.5 1.5 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|410669779|ref|YP_006922150.1| - 9.2e-21 73.2 0.3 2e-20 72.2 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|410669779|ref|YP_006922150.1| - 1.4e-16 59.4 0.5 3.1e-16 58.4 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Nepo_coat_C PF03688.9 gi|410669779|ref|YP_006922150.1| - 0.021 14.4 0.1 0.88 9.1 0.0 2.8 3 0 0 3 3 3 0 Nepovirus coat protein, C-terminal domain DUF2296 PF10058.4 gi|410669779|ref|YP_006922150.1| - 0.027 14.2 1.3 0.061 13.0 0.9 1.6 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-RanBP PF00641.13 gi|410669779|ref|YP_006922150.1| - 0.06 12.4 5.9 0.15 11.1 0.4 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-piccolo PF05715.8 gi|410669779|ref|YP_006922150.1| - 0.11 12.5 1.4 0.28 11.2 1.0 1.6 1 0 0 1 1 1 0 Piccolo Zn-finger zf-Sec23_Sec24 PF04810.10 gi|410669779|ref|YP_006922150.1| - 0.9 9.1 4.3 15 5.2 3.2 2.3 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger Rubredoxin PF00301.15 gi|410669779|ref|YP_006922150.1| - 3.6 7.5 7.5 1.1e+02 2.7 5.2 2.5 1 1 0 1 1 1 0 Rubredoxin DUF1638 PF07796.6 gi|410669780|ref|YP_006922151.1| - 1.1e-37 129.2 0.0 1.5e-37 128.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) DUF1724 PF08350.5 gi|410669781|ref|YP_006922152.1| - 3.5e-12 45.6 0.2 5.9e-12 44.9 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_20 PF12840.2 gi|410669781|ref|YP_006922152.1| - 0.072 12.9 0.1 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain AAA_14 PF13173.1 gi|410669782|ref|YP_006922153.1| - 1.8e-34 118.3 1.2 1.8e-34 118.3 0.8 2.2 3 0 0 3 3 3 1 AAA domain DUF4143 PF13635.1 gi|410669782|ref|YP_006922153.1| - 2.4e-13 50.0 2.1 7.1e-13 48.5 1.5 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|410669782|ref|YP_006922153.1| - 6.2e-09 35.8 5.2 0.00042 20.1 0.0 2.9 2 2 1 3 3 3 2 Archaeal ATPase AAA_22 PF13401.1 gi|410669782|ref|YP_006922153.1| - 1.8e-06 28.1 0.0 0.00016 21.8 0.0 3.0 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|410669782|ref|YP_006922153.1| - 6.8e-05 22.3 0.0 0.00011 21.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|410669782|ref|YP_006922153.1| - 0.00094 19.2 0.0 0.016 15.2 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|410669782|ref|YP_006922153.1| - 0.0041 17.3 0.0 0.009 16.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|410669782|ref|YP_006922153.1| - 0.023 14.8 0.0 0.062 13.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase FtsK_SpoIIIE PF01580.13 gi|410669782|ref|YP_006922153.1| - 0.1 12.0 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family ResIII PF04851.10 gi|410669783|ref|YP_006922154.1| - 2.7e-26 92.5 0.0 1.9e-24 86.5 0.0 2.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|410669783|ref|YP_006922154.1| - 1.1e-15 57.2 0.0 3.1e-15 55.7 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|410669783|ref|YP_006922154.1| - 1.6e-09 37.4 0.0 6.7e-09 35.4 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|410669783|ref|YP_006922154.1| - 0.029 14.5 0.0 0.13 12.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|410669783|ref|YP_006922154.1| - 0.053 12.4 0.0 0.097 11.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) T2SE PF00437.15 gi|410669783|ref|YP_006922154.1| - 0.075 11.9 0.0 0.21 10.4 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein DUF790 PF05626.6 gi|410669784|ref|YP_006922155.1| - 8.1e-137 455.7 4.9 1.1e-135 452.0 3.7 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF790) Mor PF08765.6 gi|410669784|ref|YP_006922155.1| - 0.021 14.6 0.0 17 5.2 0.0 3.4 3 0 0 3 3 3 0 Mor transcription activator family Phage_rep_org_N PF09681.5 gi|410669784|ref|YP_006922155.1| - 0.03 13.8 1.1 0.086 12.4 0.7 1.7 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2252 PF10009.4 gi|410669785|ref|YP_006922156.1| - 3.5e-130 434.3 0.1 4.1e-130 434.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2252) DUF1724 PF08350.5 gi|410669786|ref|YP_006922157.1| - 2.7e-14 52.4 0.0 5.2e-14 51.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_20 PF12840.2 gi|410669786|ref|YP_006922157.1| - 0.091 12.5 0.1 0.21 11.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3267 PF11667.3 gi|410669788|ref|YP_006922159.1| - 4.8e-19 68.5 2.4 4.8e-19 68.5 1.7 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3267) Arch_ATPase PF01637.13 gi|410669789|ref|YP_006922160.1| - 6.5e-31 107.8 0.0 1.7e-30 106.4 0.0 1.7 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|410669789|ref|YP_006922160.1| - 9.6e-25 86.6 0.3 2.4e-24 85.3 0.2 1.7 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|410669789|ref|YP_006922160.1| - 6.1e-10 39.0 0.1 2.5e-09 37.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|410669789|ref|YP_006922160.1| - 7.3e-07 29.3 0.0 1.9e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain HTH_45 PF14947.1 gi|410669789|ref|YP_006922160.1| - 0.00038 20.2 0.1 0.00083 19.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix AAA_16 PF13191.1 gi|410669789|ref|YP_006922160.1| - 0.0019 18.2 0.0 0.0085 16.0 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain HTH_5 PF01022.15 gi|410669789|ref|YP_006922160.1| - 0.0078 15.8 0.0 0.04 13.5 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family SIS_2 PF13580.1 gi|410669789|ref|YP_006922160.1| - 0.067 12.9 0.0 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 SIS domain AAA PF00004.24 gi|410669789|ref|YP_006922160.1| - 0.069 13.3 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Miro PF08477.8 gi|410669789|ref|YP_006922160.1| - 0.13 12.7 0.0 0.39 11.2 0.0 1.8 1 0 0 1 1 1 0 Miro-like protein MarR_2 PF12802.2 gi|410669789|ref|YP_006922160.1| - 0.15 11.7 0.0 0.48 10.1 0.0 1.8 1 0 0 1 1 1 0 MarR family Kelch_4 PF13418.1 gi|410669790|ref|YP_006922161.1| - 4.4e-05 23.1 0.0 37 4.1 0.0 7.2 9 0 0 9 9 9 1 Galactose oxidase, central domain BssS PF13991.1 gi|410669790|ref|YP_006922161.1| - 0.01 15.5 1.0 0.043 13.5 0.2 2.3 1 1 0 2 2 2 0 BssS protein family HVSL PF09749.4 gi|410669790|ref|YP_006922161.1| - 0.16 11.0 0.6 5.2 6.0 0.1 2.3 1 1 1 2 2 2 0 Uncharacterised conserved protein OrfB_IS605 PF01385.14 gi|410669791|ref|YP_006922162.1| - 8.9e-16 57.9 1.0 1.2e-15 57.5 0.7 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|410669791|ref|YP_006922162.1| - 4.4e-12 45.4 0.0 1.2e-11 44.1 0.0 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Trns_repr_metal PF02583.12 gi|410669791|ref|YP_006922162.1| - 0.04 14.0 0.1 0.13 12.4 0.0 1.9 1 0 0 1 1 1 0 Metal-sensitive transcriptional repressor HTH_OrfB_IS605 PF12323.3 gi|410669791|ref|YP_006922162.1| - 0.053 12.8 0.1 0.11 11.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.6 gi|410669792|ref|YP_006922163.1| - 7.8e-24 83.1 1.5 7.8e-24 83.1 1.0 2.0 2 1 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|410669792|ref|YP_006922163.1| - 3.5e-16 59.2 0.5 5e-16 58.7 0.3 1.2 1 0 0 1 1 1 1 Probable transposase Trns_repr_metal PF02583.12 gi|410669792|ref|YP_006922163.1| - 0.033 14.3 0.7 0.075 13.2 0.1 2.0 2 1 0 2 2 2 0 Metal-sensitive transcriptional repressor DZR PF12773.2 gi|410669792|ref|YP_006922163.1| - 0.11 12.3 2.0 0.23 11.3 1.4 1.5 1 0 0 1 1 1 0 Double zinc ribbon Elf1 PF05129.8 gi|410669792|ref|YP_006922163.1| - 1.1 9.0 6.6 2.9 7.6 4.6 1.8 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Tnp_zf-ribbon_2 PF13842.1 gi|410669792|ref|YP_006922163.1| - 1.3 9.5 9.7 4.5 7.7 6.6 2.1 1 1 1 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zinc_ribbon_4 PF13717.1 gi|410669792|ref|YP_006922163.1| - 1.9 8.2 7.2 0.49 10.1 0.7 2.8 2 1 1 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|410669792|ref|YP_006922163.1| - 2.2 7.9 7.0 5.5 6.6 3.3 2.6 2 1 1 3 3 3 0 zinc-ribbon domain META PF03724.11 gi|410669793|ref|YP_006922164.1| - 8.7e-29 99.3 0.0 2.4e-14 52.9 0.0 2.1 2 0 0 2 2 2 2 META domain Lipocalin_4 PF13648.1 gi|410669793|ref|YP_006922164.1| - 4.6e-05 23.9 0.3 0.03 14.9 0.0 2.4 2 0 0 2 2 2 2 Lipocalin-like domain Fer4 PF00037.22 gi|410669794|ref|YP_006922165.1| - 6.5e-12 44.5 13.2 9.8e-06 24.9 0.7 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|410669794|ref|YP_006922165.1| - 1.1e-11 44.0 12.3 4.5e-06 26.3 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|410669794|ref|YP_006922165.1| - 5.5e-11 42.1 8.3 5.5e-11 42.1 5.8 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410669794|ref|YP_006922165.1| - 8.6e-11 42.0 44.1 8.5e-08 32.4 10.5 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410669794|ref|YP_006922165.1| - 1.1e-08 35.1 12.8 1.1e-08 35.1 8.8 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410669794|ref|YP_006922165.1| - 9.2e-07 28.6 10.3 9.2e-07 28.6 7.1 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410669794|ref|YP_006922165.1| - 1.3e-06 27.9 12.1 0.00028 20.6 0.8 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|410669794|ref|YP_006922165.1| - 1.7e-06 27.9 14.4 1.7e-06 27.9 10.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410669794|ref|YP_006922165.1| - 2.4e-05 24.9 18.9 0.0053 17.4 0.9 2.5 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|410669794|ref|YP_006922165.1| - 8e-05 22.6 12.9 0.002 18.3 1.5 2.9 3 1 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|410669794|ref|YP_006922165.1| - 0.00023 21.4 9.4 0.0026 18.1 0.8 2.8 3 1 0 3 3 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410669794|ref|YP_006922165.1| - 0.011 16.0 20.4 0.058 13.7 2.7 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|410669794|ref|YP_006922165.1| - 0.012 16.1 20.2 0.034 14.7 4.8 3.3 4 1 0 4 4 2 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|410669794|ref|YP_006922165.1| - 0.018 14.9 10.0 0.017 14.9 6.5 1.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Na_trans_assoc PF06512.8 gi|410669794|ref|YP_006922165.1| - 0.059 13.3 0.5 0.059 13.3 0.4 1.4 1 1 0 1 1 1 0 Sodium ion transport-associated Fer4_13 PF13370.1 gi|410669794|ref|YP_006922165.1| - 0.19 12.1 16.1 4.8 7.6 9.8 3.3 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|410669794|ref|YP_006922165.1| - 6.9 7.3 18.3 10 6.7 3.6 3.0 1 1 2 3 3 3 0 4Fe-4S single cluster domain CdhD PF03599.11 gi|410669795|ref|YP_006922166.1| - 2e-12 46.3 0.0 3.1e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF1118 PF06549.7 gi|410669795|ref|YP_006922166.1| - 0.057 13.5 3.5 0.12 12.5 2.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1118) Antitoxin-MazE PF04014.13 gi|410669796|ref|YP_006922167.1| - 0.00061 19.4 0.0 0.00096 18.8 0.0 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF2576 PF10845.3 gi|410669796|ref|YP_006922167.1| - 0.068 12.3 0.6 0.1 11.7 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2576) Cyc-maltodext_C PF10438.4 gi|410669797|ref|YP_006922169.1| - 0.053 13.5 0.1 0.059 13.4 0.1 1.1 1 0 0 1 1 1 0 Cyclo-malto-dextrinase C-terminal domain Abi PF02517.11 gi|410669799|ref|YP_006922170.1| - 2.4e-17 62.8 4.5 2.4e-17 62.8 3.1 2.4 2 1 0 2 2 2 1 CAAX protease self-immunity Trm112p PF03966.11 gi|410669800|ref|YP_006922171.1| - 0.048 14.0 0.2 0.18 12.2 0.2 1.9 1 1 0 1 1 1 0 Trm112p-like protein zf-C4_ClpX PF06689.8 gi|410669800|ref|YP_006922171.1| - 0.065 12.7 7.2 0.52 9.8 0.1 2.6 2 1 0 2 2 2 0 ClpX C4-type zinc finger Mut7-C PF01927.11 gi|410669800|ref|YP_006922171.1| - 0.077 12.9 0.1 0.088 12.7 0.1 1.1 1 0 0 1 1 1 0 Mut7-C RNAse domain Glyco_tranf_2_2 PF10111.4 gi|410669800|ref|YP_006922171.1| - 0.12 11.3 0.0 0.12 11.3 0.0 1.0 1 0 0 1 1 1 0 Glycosyltransferase like family 2 YokU PF14122.1 gi|410669800|ref|YP_006922171.1| - 0.13 11.9 0.1 0.16 11.6 0.1 1.3 1 0 0 1 1 1 0 YokU-like protein A2L_zn_ribbon PF08792.5 gi|410669800|ref|YP_006922171.1| - 0.14 11.6 1.2 6.3 6.3 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain Prok-RING_1 PF14446.1 gi|410669800|ref|YP_006922171.1| - 0.2 11.4 1.2 4.2 7.1 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 UPF0150 PF03681.10 gi|410669801|ref|YP_006922172.1| - 3.4e-19 68.2 0.2 3.9e-19 68.0 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF1902 PF08972.6 gi|410669801|ref|YP_006922172.1| - 0.00041 19.8 0.0 0.00049 19.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) YcfA PF07927.7 gi|410669802|ref|YP_006922173.1| - 1.1e-16 60.4 0.2 1.4e-16 60.1 0.1 1.1 1 0 0 1 1 1 1 YcfA-like protein TrmB PF01978.14 gi|410669802|ref|YP_006922173.1| - 0.066 12.9 0.0 0.2 11.3 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB LOH1CR12 PF10158.4 gi|410669805|ref|YP_006922176.1| - 0.0036 17.0 0.0 0.0063 16.3 0.0 1.4 1 0 0 1 1 1 1 Tumour suppressor protein Epimerase PF01370.16 gi|410669807|ref|YP_006922178.1| - 0.02 14.2 0.0 0.02 14.2 0.0 1.1 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DUF3674 PF12426.3 gi|410669808|ref|YP_006922179.1| - 0.065 12.6 0.1 0.085 12.2 0.1 1.2 1 0 0 1 1 1 0 RNA dependent RNA polymerase UPF0150 PF03681.10 gi|410669809|ref|YP_006922180.1| - 2.8e-21 74.8 0.1 3.6e-21 74.5 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Omega-toxin PF06357.6 gi|410669809|ref|YP_006922180.1| - 0.04 13.5 0.2 0.057 13.0 0.1 1.2 1 0 0 1 1 1 0 Omega-atracotoxin UPF0175 PF03683.8 gi|410669810|ref|YP_006922181.1| - 2.1e-05 23.8 0.1 2.8e-05 23.5 0.1 1.4 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0175) RuvB_C PF05491.8 gi|410669810|ref|YP_006922181.1| - 0.032 13.8 0.1 0.054 13.1 0.1 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus RHH_1 PF01402.16 gi|410669810|ref|YP_006922181.1| - 1.6 8.7 4.0 1.8 8.5 0.3 2.8 3 1 0 3 3 3 0 Ribbon-helix-helix protein, copG family DUF4143 PF13635.1 gi|410669811|ref|YP_006922182.1| - 2.8e-12 46.6 0.0 3.6e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) DUF234 PF03008.9 gi|410669811|ref|YP_006922182.1| - 0.055 13.5 0.3 0.21 11.7 0.2 1.8 1 1 1 2 2 2 0 Archaea bacterial proteins of unknown function DUF772 PF05598.6 gi|410669812|ref|YP_006922183.1| - 1.5e-21 76.0 0.1 5.3e-21 74.3 0.0 1.8 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|410669812|ref|YP_006922183.1| - 2.9e-12 46.6 0.8 1.4e-10 41.0 0.6 2.2 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|410669812|ref|YP_006922183.1| - 0.00028 20.5 0.1 0.0005 19.7 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|410669812|ref|YP_006922183.1| - 0.00041 20.1 0.1 0.00075 19.2 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|410669812|ref|YP_006922183.1| - 0.021 14.8 0.1 0.043 13.8 0.1 1.5 1 0 0 1 1 1 0 Transposase DDE domain NTP_transf_2 PF01909.18 gi|410669813|ref|YP_006922184.1| - 6.5e-10 39.2 0.1 7.7e-10 38.9 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain UPF0175 PF03683.8 gi|410669815|ref|YP_006922186.1| - 0.00043 19.6 0.1 0.00076 18.8 0.1 1.6 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0175) HTH_24 PF13412.1 gi|410669815|ref|YP_006922186.1| - 0.021 14.1 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding NAD_binding_6 PF08030.7 gi|410669815|ref|YP_006922186.1| - 0.11 12.4 0.5 0.16 11.8 0.3 1.3 1 0 0 1 1 1 0 Ferric reductase NAD binding domain RHH_1 PF01402.16 gi|410669815|ref|YP_006922186.1| - 0.11 12.3 0.0 0.41 10.6 0.0 2.1 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family DUF86 PF01934.12 gi|410669816|ref|YP_006922187.1| - 4.3e-22 77.9 0.1 5e-22 77.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|410669817|ref|YP_006922188.1| - 3.6e-13 49.6 1.6 4e-13 49.4 1.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain MENTAL PF10457.4 gi|410669820|ref|YP_006922191.1| - 0.015 14.8 0.1 0.021 14.4 0.0 1.4 1 1 0 1 1 1 0 Cholesterol-capturing domain PufQ PF05398.6 gi|410669820|ref|YP_006922191.1| - 0.028 14.4 0.3 0.028 14.4 0.2 1.9 1 1 1 2 2 2 0 PufQ cytochrome subunit YwiC PF14256.1 gi|410669820|ref|YP_006922191.1| - 0.046 13.8 1.5 0.053 13.6 1.1 1.0 1 0 0 1 1 1 0 YwiC-like protein DctQ PF04290.7 gi|410669820|ref|YP_006922191.1| - 0.075 12.8 2.5 0.081 12.6 1.7 1.1 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component Cation_efflux PF01545.16 gi|410669820|ref|YP_006922191.1| - 0.22 10.5 2.4 0.24 10.4 1.7 1.1 1 0 0 1 1 1 0 Cation efflux family Yip1 PF04893.12 gi|410669820|ref|YP_006922191.1| - 0.33 10.4 3.8 0.36 10.3 2.7 1.1 1 0 0 1 1 1 0 Yip1 domain DUF4064 PF13273.1 gi|410669820|ref|YP_006922191.1| - 2 8.5 5.7 5.3 7.2 3.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) NosD PF05048.8 gi|410669821|ref|YP_006922192.1| - 1e-35 123.0 90.2 7.9e-17 61.1 19.9 4.3 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|410669821|ref|YP_006922192.1| - 1.4e-32 112.6 103.1 2.1e-14 53.6 17.8 5.2 2 1 3 5 5 5 4 Right handed beta helix region EamA PF00892.15 gi|410669822|ref|YP_006922193.1| - 3.1e-14 53.0 35.2 3.7e-07 30.2 8.5 2.3 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|410669822|ref|YP_006922193.1| - 0.00014 22.0 9.1 0.00014 22.0 6.3 4.0 1 1 3 4 4 4 1 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|410669822|ref|YP_006922193.1| - 0.0031 17.3 8.3 0.088 12.6 0.5 2.8 2 1 1 3 3 3 2 Uncharacterised protein family UPF0546 GyrI-like PF06445.10 gi|410669823|ref|YP_006922194.1| - 8.2e-29 100.6 0.1 9.1e-29 100.4 0.1 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.1 gi|410669823|ref|YP_006922194.1| - 1.9e-09 37.7 0.0 2.2e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Integron-associated effector binding protein SOUL PF04832.7 gi|410669823|ref|YP_006922194.1| - 0.048 13.1 0.0 0.25 10.8 0.0 1.8 2 0 0 2 2 2 0 SOUL heme-binding protein OrfB_IS605 PF01385.14 gi|410669825|ref|YP_006922196.1| - 6.5e-46 156.5 2.2 6.5e-46 156.5 1.5 1.7 1 1 1 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|410669825|ref|YP_006922196.1| - 8.3e-23 79.8 0.2 1.5e-22 79.0 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|410669825|ref|YP_006922196.1| - 2.2e-19 68.4 0.3 8.1e-19 66.6 0.2 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain DUF488 PF04343.8 gi|410669825|ref|YP_006922196.1| - 0.0092 16.3 0.1 0.025 14.9 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function, DUF488 DZR PF12773.2 gi|410669825|ref|YP_006922196.1| - 0.12 12.2 0.2 0.25 11.1 0.2 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-RanBP PF00641.13 gi|410669825|ref|YP_006922196.1| - 0.41 9.7 4.2 4.1 6.5 0.7 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Resolvase PF00239.16 gi|410669828|ref|YP_006922199.1| - 6.8e-43 145.9 0.8 8.8e-43 145.5 0.6 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_28 PF13518.1 gi|410669828|ref|YP_006922199.1| - 0.00076 19.4 0.0 0.0056 16.6 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|410669828|ref|YP_006922199.1| - 0.0065 16.3 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|410669828|ref|YP_006922199.1| - 0.088 12.4 0.0 0.3 10.8 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain DoxX_3 PF13781.1 gi|410669829|ref|YP_006922200.1| - 0.017 15.4 0.3 0.018 15.3 0.2 1.0 1 0 0 1 1 1 0 DoxX-like family UL2 PF08196.6 gi|410669829|ref|YP_006922200.1| - 3.9 7.2 6.0 19 5.0 4.2 1.9 1 1 0 1 1 1 0 UL2 protein DUF1724 PF08350.5 gi|410669830|ref|YP_006922201.1| - 9.4e-11 41.0 0.1 1.8e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) DUF1699 PF08004.6 gi|410669831|ref|YP_006922202.1| - 5.1e-60 200.7 0.3 5.8e-60 200.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF1724 PF08350.5 gi|410669832|ref|YP_006922203.1| - 2e-16 59.2 0.1 4.2e-16 58.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) DUF1724 PF08350.5 gi|410669833|ref|YP_006922204.1| - 1.8e-12 46.6 0.2 4.7e-12 45.2 0.2 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_20 PF12840.2 gi|410669833|ref|YP_006922204.1| - 0.17 11.7 0.6 3 7.6 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1724 PF08350.5 gi|410669834|ref|YP_006922205.1| - 6.6e-17 60.7 1.9 8e-17 60.5 0.1 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF1724) HXXEE PF13787.1 gi|410669836|ref|YP_006922207.1| - 2 8.8 6.7 0.2 12.0 1.6 1.7 2 0 0 2 2 2 0 Protein of unknown function with HXXEE motif N6_Mtase PF02384.11 gi|410669839|ref|YP_006922210.1| - 9.9e-106 353.3 0.0 1.3e-105 352.9 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|410669839|ref|YP_006922210.1| - 3.7e-33 114.8 0.9 3.7e-33 114.8 0.6 2.2 2 1 0 2 2 2 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|410669839|ref|YP_006922210.1| - 2.3e-08 34.0 0.0 4.5e-08 33.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|410669839|ref|YP_006922210.1| - 6.3e-07 29.1 0.0 1.3e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|410669839|ref|YP_006922210.1| - 0.017 14.7 0.2 0.45 10.0 0.0 2.8 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|410669839|ref|YP_006922210.1| - 0.063 13.6 0.0 0.7 10.2 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain Methylase_S PF01420.14 gi|410669840|ref|YP_006922211.1| - 2.1e-42 144.9 13.6 1.4e-23 83.6 3.3 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain DUF848 PF05852.6 gi|410669840|ref|YP_006922211.1| - 0.077 12.8 1.1 7.9 6.3 0.1 2.3 2 0 0 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) AAA_15 PF13175.1 gi|410669841|ref|YP_006922212.1| - 3.9e-16 59.1 41.3 9.6e-16 57.8 21.0 2.9 2 2 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.1 gi|410669841|ref|YP_006922212.1| - 5.1e-15 56.2 19.4 5.1e-15 56.2 13.4 3.0 2 2 0 2 2 2 1 AAA domain DUF2813 PF11398.3 gi|410669841|ref|YP_006922212.1| - 7.1e-05 22.0 5.7 0.0045 16.1 0.0 2.7 3 0 0 3 3 3 2 Protein of unknown function (DUF2813) SMC_N PF02463.14 gi|410669841|ref|YP_006922212.1| - 0.0051 16.0 10.5 0.032 13.4 7.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_tran PF00005.22 gi|410669841|ref|YP_006922212.1| - 0.0055 17.0 0.2 1.7 8.9 0.0 3.4 3 0 0 3 3 3 1 ABC transporter AAA_23 PF13476.1 gi|410669841|ref|YP_006922212.1| - 0.041 14.1 34.2 23 5.2 23.7 3.4 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|410669841|ref|YP_006922212.1| - 0.13 11.8 0.0 0.28 10.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain HSDR_N PF04313.9 gi|410669842|ref|YP_006922213.1| - 3.4e-31 108.5 1.4 3.4e-31 108.5 1.0 3.5 3 2 1 4 4 4 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.10 gi|410669842|ref|YP_006922213.1| - 5e-19 68.8 0.2 2.3e-18 66.6 0.1 2.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF3387 PF11867.3 gi|410669842|ref|YP_006922213.1| - 7e-16 58.1 7.7 1.3e-15 57.2 5.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) YcbB PF08664.5 gi|410669842|ref|YP_006922213.1| - 0.0042 16.8 4.0 0.9 9.3 0.0 3.7 4 0 0 4 4 4 2 YcbB domain DUF45 PF01863.12 gi|410669843|ref|YP_006922214.1| - 2.6e-53 180.9 4.0 2.9e-53 180.7 2.8 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.5 gi|410669843|ref|YP_006922214.1| - 9.8e-06 25.5 0.1 1.8e-05 24.7 0.1 1.4 1 0 0 1 1 1 1 WLM domain SprT-like PF10263.4 gi|410669843|ref|YP_006922214.1| - 0.04 13.5 0.1 0.084 12.5 0.0 1.5 2 0 0 2 2 2 0 SprT-like family Radical_SAM PF04055.16 gi|410669845|ref|YP_006922216.1| - 9e-10 38.9 0.1 1.3e-09 38.4 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|410669845|ref|YP_006922216.1| - 0.0015 18.6 0.3 0.01 15.9 0.0 2.2 1 1 0 2 2 2 1 4Fe-4S single cluster domain Gp37_Gp68 PF07505.6 gi|410669845|ref|YP_006922216.1| - 0.0019 17.4 0.3 0.0044 16.2 0.2 1.6 1 1 0 1 1 1 1 Phage protein Gp37/Gp68 Fer4_14 PF13394.1 gi|410669845|ref|YP_006922216.1| - 0.0091 16.0 0.4 0.046 13.7 0.1 2.2 1 1 1 2 2 2 1 4Fe-4S single cluster domain YppF PF14178.1 gi|410669845|ref|YP_006922216.1| - 0.11 12.0 0.8 0.36 10.4 0.3 2.0 2 0 0 2 2 2 0 YppF-like protein DUF1848 PF08902.6 gi|410669845|ref|YP_006922216.1| - 2.1 7.8 10.7 3.4 7.1 3.6 2.8 2 1 0 3 3 3 0 Domain of unknown function (DUF1848) Replic_Relax PF13814.1 gi|410669847|ref|YP_006922218.1| - 0.012 15.4 0.1 0.021 14.6 0.1 1.4 1 0 0 1 1 1 0 Replication-relaxation HTH_45 PF14947.1 gi|410669847|ref|YP_006922218.1| - 0.047 13.5 0.1 0.28 11.0 0.1 2.4 1 1 0 1 1 1 0 Winged helix-turn-helix HALZ PF02183.13 gi|410669847|ref|YP_006922218.1| - 9.7 5.9 11.4 0.87 9.3 0.9 2.9 3 0 0 3 3 3 0 Homeobox associated leucine zipper IncA PF04156.9 gi|410669848|ref|YP_006922219.1| - 7.1 6.1 5.9 8.5 5.9 4.1 1.1 1 0 0 1 1 1 0 IncA protein TRAM PF01938.15 gi|410669849|ref|YP_006922220.1| - 1.5e-14 53.5 1.0 1.5e-14 53.4 0.7 1.0 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.19 gi|410669849|ref|YP_006922220.1| - 0.13 11.7 0.3 0.43 10.1 0.1 1.8 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) Glug PF07581.7 gi|410669850|ref|YP_006922221.1| - 3.9e-42 139.6 161.9 1.5e-05 24.8 1.7 17.1 15 1 1 16 16 16 14 The GLUG motif Peptidase_M26_N PF05342.9 gi|410669850|ref|YP_006922221.1| - 1.4e-06 27.4 5.3 0.0017 17.3 0.4 3.3 3 0 0 3 3 3 2 M26 IgA1-specific Metallo-endopeptidase N-terminal region DUF4014 PF13198.1 gi|410669851|ref|YP_006922222.1| - 0.034 14.5 0.4 0.034 14.5 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4014) Toxin_trans PF07952.7 gi|410669852|ref|YP_006922223.1| - 0.039 12.8 0.2 0.058 12.2 0.2 1.2 1 0 0 1 1 1 0 Clostridium neurotoxin, Translocation domain Tbf5 PF06331.7 gi|410669852|ref|YP_006922223.1| - 0.097 12.4 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 Transcription factor TFIIH complex subunit Tfb5 DUF2758 PF10957.3 gi|410669854|ref|YP_006922225.1| - 0.025 14.3 0.2 0.073 12.9 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2758) DUF366 PF04017.7 gi|410669854|ref|YP_006922225.1| - 0.037 13.2 0.4 0.067 12.4 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF366) UPF0122 PF04297.9 gi|410669855|ref|YP_006922226.1| - 0.036 14.0 0.6 0.24 11.4 0.3 2.1 1 1 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like Prp19_bind PF06991.6 gi|410669855|ref|YP_006922226.1| - 5 6.3 8.7 40 3.3 5.6 2.2 1 1 1 2 2 2 0 Splicing factor, Prp19-binding domain DUF4581 PF15167.1 gi|410669857|ref|YP_006922228.1| - 0.091 12.6 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4581) Snapin_Pallidin PF14712.1 gi|410669858|ref|YP_006922229.1| - 0.055 13.7 0.2 0.078 13.2 0.1 1.2 1 0 0 1 1 1 0 Snapin/Pallidin TcdB_N PF12918.2 gi|410669858|ref|YP_006922229.1| - 0.074 13.1 0.9 0.11 12.6 0.6 1.4 1 0 0 1 1 1 0 TcdB toxin N-terminal helical domain GlutR_N PF05201.10 gi|410669858|ref|YP_006922229.1| - 0.088 12.3 0.2 0.1 12.1 0.2 1.1 1 0 0 1 1 1 0 Glutamyl-tRNAGlu reductase, N-terminal domain UbiA PF01040.13 gi|410669860|ref|YP_006922231.1| - 2.6e-22 79.2 21.4 3.5e-22 78.8 14.8 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family ABC_membrane_3 PF13748.1 gi|410669860|ref|YP_006922231.1| - 0.028 13.4 0.2 0.028 13.4 0.1 1.6 2 0 0 2 2 2 0 ABC transporter transmembrane region Epimerase PF01370.16 gi|410669864|ref|YP_006922235.1| - 1.1e-33 116.6 0.0 1.2e-33 116.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|410669864|ref|YP_006922235.1| - 1.1e-13 50.6 0.0 1.4e-13 50.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|410669864|ref|YP_006922235.1| - 1.1e-12 47.4 0.0 1.4e-11 43.8 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|410669864|ref|YP_006922235.1| - 7.4e-10 38.1 0.0 9.4e-10 37.8 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|410669864|ref|YP_006922235.1| - 6.3e-09 35.1 0.0 9.7e-09 34.5 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|410669864|ref|YP_006922235.1| - 9e-05 22.5 0.0 9.9e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|410669864|ref|YP_006922235.1| - 0.0066 15.7 0.0 0.017 14.4 0.0 1.7 3 0 0 3 3 3 1 NmrA-like family DDE_Tnp_1 PF01609.16 gi|410669865|ref|YP_006922236.1| - 2.6e-15 56.5 3.6 6.6e-15 55.2 2.5 1.7 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|410669865|ref|YP_006922236.1| - 8.2e-05 22.7 0.2 8.2e-05 22.7 0.1 2.8 3 0 0 3 3 3 1 Transposase DDE domain DUF772 PF05598.6 gi|410669865|ref|YP_006922236.1| - 0.0018 18.1 0.1 0.005 16.7 0.1 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.1 gi|410669865|ref|YP_006922236.1| - 0.0078 15.9 2.2 0.011 15.4 0.2 2.1 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|410669865|ref|YP_006922236.1| - 0.012 15.1 0.5 0.025 14.1 0.4 1.4 1 0 0 1 1 1 0 DDE superfamily endonuclease DUF1616 PF07760.6 gi|410669866|ref|YP_006922237.1| - 3.7e-106 354.4 6.2 4.1e-106 354.3 4.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) 7TMR-DISM_7TM PF07695.6 gi|410669866|ref|YP_006922237.1| - 0.69 9.5 14.7 5.1 6.7 0.1 2.9 1 1 2 3 3 3 0 7TM diverse intracellular signalling Glycos_transf_2 PF00535.21 gi|410669867|ref|YP_006922238.1| - 1.1e-38 132.6 0.1 1.7e-21 76.6 0.0 2.3 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|410669867|ref|YP_006922238.1| - 7.2e-12 45.5 0.1 0.00014 21.7 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|410669867|ref|YP_006922238.1| - 6.6e-08 32.7 0.0 0.0051 17.1 0.0 2.4 2 0 0 2 2 2 2 Glycosyl transferase family 2 NMO PF03060.10 gi|410669867|ref|YP_006922238.1| - 0.0039 16.3 0.0 0.006 15.7 0.0 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase Baculo_p26 PF04766.7 gi|410669867|ref|YP_006922238.1| - 0.029 13.6 0.4 0.081 12.1 0.2 1.8 1 1 0 1 1 1 0 Nucleopolyhedrovirus p26 protein Beta_helix PF13229.1 gi|410669868|ref|YP_006922239.1| - 2.6e-35 121.5 92.1 5.6e-12 45.6 12.1 5.8 2 2 3 5 5 5 5 Right handed beta helix region NosD PF05048.8 gi|410669868|ref|YP_006922239.1| - 5.1e-19 68.3 67.5 5.1e-05 22.5 7.0 6.3 1 1 3 5 5 5 5 Periplasmic copper-binding protein (NosD) Pectate_lyase_3 PF12708.2 gi|410669868|ref|YP_006922239.1| - 4.3e-13 49.9 64.0 0.00018 21.6 21.0 7.9 1 1 4 5 5 5 3 Pectate lyase superfamily protein BMC PF00936.14 gi|410669868|ref|YP_006922239.1| - 0.0099 15.5 6.8 0.7 9.6 0.2 3.6 3 0 0 3 3 3 2 BMC domain Adap_comp_sub PF00928.16 gi|410669868|ref|YP_006922239.1| - 0.031 13.3 0.0 0.058 12.4 0.0 1.4 1 0 0 1 1 1 0 Adaptor complexes medium subunit family Beta_helix PF13229.1 gi|410669870|ref|YP_006922241.1| - 4.1e-36 124.1 124.5 6.1e-10 39.0 10.2 6.9 2 2 4 6 6 6 6 Right handed beta helix region NosD PF05048.8 gi|410669870|ref|YP_006922241.1| - 5.5e-21 74.8 91.2 4.2e-05 22.8 17.0 6.5 2 2 3 5 5 5 5 Periplasmic copper-binding protein (NosD) Pectate_lyase_3 PF12708.2 gi|410669870|ref|YP_006922241.1| - 3.7e-13 50.1 76.8 2.6e-06 27.7 8.8 8.5 2 2 4 6 6 6 3 Pectate lyase superfamily protein PKD PF00801.15 gi|410669870|ref|YP_006922241.1| - 3.6e-11 42.6 0.5 2.2e-10 40.1 0.1 2.7 2 0 0 2 2 2 1 PKD domain Yqai PF09466.5 gi|410669870|ref|YP_006922241.1| - 0.00037 20.4 1.6 1.1 9.2 0.0 3.2 3 0 0 3 3 3 2 Hypothetical protein Yqai DUF4064 PF13273.1 gi|410669871|ref|YP_006922242.1| - 0.03 14.3 0.5 0.033 14.2 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) TrbC PF04956.8 gi|410669871|ref|YP_006922242.1| - 0.031 14.2 0.2 0.036 14.0 0.1 1.1 1 0 0 1 1 1 0 TrbC/VIRB2 family DUF3285 PF11688.3 gi|410669871|ref|YP_006922242.1| - 0.036 13.6 0.1 0.061 12.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3285) PTS_EIIC PF02378.13 gi|410669871|ref|YP_006922242.1| - 0.04 12.7 0.2 0.04 12.7 0.1 1.0 1 0 0 1 1 1 0 Phosphotransferase system, EIIC DUF2062 PF09835.4 gi|410669871|ref|YP_006922242.1| - 0.075 12.6 0.1 0.078 12.5 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2062) CutA1 PF03091.10 gi|410669871|ref|YP_006922242.1| - 0.076 12.6 0.1 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 CutA1 divalent ion tolerance protein ABC2_membrane_3 PF12698.2 gi|410669871|ref|YP_006922242.1| - 0.26 10.2 1.9 0.37 9.7 1.3 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein Beta_helix PF13229.1 gi|410669872|ref|YP_006922243.1| - 1.4e-39 135.4 109.8 1.7e-09 37.6 6.2 7.2 1 1 6 7 7 7 7 Right handed beta helix region NosD PF05048.8 gi|410669872|ref|YP_006922243.1| - 2.8e-19 69.1 87.5 2.2e-06 27.0 6.8 6.9 2 2 4 6 6 6 6 Periplasmic copper-binding protein (NosD) DUF1565 PF07602.6 gi|410669872|ref|YP_006922243.1| - 2e-14 53.3 63.4 2.9e-06 26.6 6.0 6.3 2 2 2 5 5 5 4 Protein of unknown function (DUF1565) PKD PF00801.15 gi|410669872|ref|YP_006922243.1| - 3.7e-14 52.2 0.9 1.6e-13 50.1 0.6 2.2 1 0 0 1 1 1 1 PKD domain Pectate_lyase_3 PF12708.2 gi|410669872|ref|YP_006922243.1| - 4.6e-13 49.8 65.2 2e-06 28.0 13.9 7.3 2 2 1 4 4 4 2 Pectate lyase superfamily protein Yqai PF09466.5 gi|410669872|ref|YP_006922243.1| - 0.047 13.7 0.4 11 6.0 0.0 3.1 2 0 0 2 2 2 0 Hypothetical protein Yqai LRR_1 PF00560.28 gi|410669872|ref|YP_006922243.1| - 1.7 8.9 4.2 2.4e+02 2.4 0.2 5.5 5 0 0 5 5 5 0 Leucine Rich Repeat Beta_helix PF13229.1 gi|410669873|ref|YP_006922244.1| - 7e-19 68.1 46.7 1.6e-08 34.4 26.6 3.5 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.6 gi|410669873|ref|YP_006922244.1| - 4.1e-08 32.6 18.9 4.6e-06 25.9 0.2 3.2 1 1 2 3 3 3 3 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.2 gi|410669873|ref|YP_006922244.1| - 5.1e-06 26.7 21.4 1.6e-05 25.1 6.9 3.9 1 1 1 2 2 2 1 Pectate lyase superfamily protein Kelch_6 PF13964.1 gi|410669873|ref|YP_006922244.1| - 0.2 11.8 1.2 1.4 9.2 0.1 2.7 2 0 0 2 2 2 0 Kelch motif DUF354 PF04007.7 gi|410669874|ref|YP_006922245.1| - 2.7e-29 102.1 0.0 3.2e-29 101.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Polysacc_deac_1 PF01522.16 gi|410669875|ref|YP_006922246.1| - 2.2e-05 24.0 0.0 0.0034 17.0 0.0 2.9 2 1 0 2 2 2 2 Polysaccharide deacetylase Acetyltransf_6 PF13480.1 gi|410669876|ref|YP_006922247.1| - 3.8e-07 30.1 0.0 8.3e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|410669876|ref|YP_006922247.1| - 0.0025 16.5 1.1 0.091 11.4 0.4 2.6 2 1 1 3 3 3 1 FemAB family DUF2156 PF09924.4 gi|410669876|ref|YP_006922247.1| - 0.017 13.9 0.0 0.044 12.5 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2156) DUF4364 PF14277.1 gi|410669876|ref|YP_006922247.1| - 0.052 13.1 0.2 0.11 12.1 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Asn_synthase PF00733.16 gi|410669877|ref|YP_006922248.1| - 2.7e-58 197.4 0.2 3.8e-58 196.9 0.2 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|410669877|ref|YP_006922248.1| - 6.5e-51 171.2 0.0 1.1e-50 170.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|410669877|ref|YP_006922248.1| - 2.2e-48 163.5 0.0 6e-48 162.1 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|410669877|ref|YP_006922248.1| - 2.6e-05 23.0 0.0 0.066 11.9 0.0 2.4 1 1 1 2 2 2 2 Glutamine amidotransferases class-II DUF3700 PF12481.3 gi|410669877|ref|YP_006922248.1| - 0.00033 19.9 0.0 0.00056 19.1 0.0 1.3 1 0 0 1 1 1 1 Aluminium induced protein NfeD PF01957.13 gi|410669879|ref|YP_006922250.1| - 0.011 15.8 1.3 0.012 15.8 0.9 1.0 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF2069 PF09842.4 gi|410669879|ref|YP_006922250.1| - 0.098 12.6 0.3 0.095 12.6 0.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2069) DUF1206 PF06724.6 gi|410669879|ref|YP_006922250.1| - 0.14 11.9 1.3 0.22 11.2 0.9 1.3 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1206) Abi PF02517.11 gi|410669880|ref|YP_006922251.1| - 1.7e-15 56.9 24.2 2.8e-14 52.9 16.8 2.7 1 1 0 1 1 1 1 CAAX protease self-immunity COX7C PF02935.11 gi|410669880|ref|YP_006922251.1| - 0.12 12.2 0.7 0.27 11.0 0.0 2.0 2 0 0 2 2 2 0 Cytochrome c oxidase subunit VIIc DUF3021 PF11457.3 gi|410669882|ref|YP_006922253.1| - 0.021 14.6 0.1 0.024 14.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3021) DUF2232 PF09991.4 gi|410669882|ref|YP_006922253.1| - 0.023 13.6 0.2 0.029 13.3 0.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2232) FixP_N PF14715.1 gi|410669882|ref|YP_006922253.1| - 0.028 13.7 0.8 0.033 13.5 0.6 1.1 1 0 0 1 1 1 0 N-terminal domain of cytochrome oxidase-cbb3, FixP DUF2975 PF11188.3 gi|410669882|ref|YP_006922253.1| - 0.035 13.8 0.0 0.038 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) SecE PF00584.15 gi|410669882|ref|YP_006922253.1| - 0.042 13.4 1.7 0.056 13.0 1.2 1.2 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex UPF0104 PF03706.8 gi|410669882|ref|YP_006922253.1| - 0.042 13.1 0.1 0.043 13.0 0.1 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) TRP PF06011.7 gi|410669882|ref|YP_006922253.1| - 0.059 11.9 0.1 0.065 11.7 0.0 1.0 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel HemY_N PF07219.8 gi|410669882|ref|YP_006922253.1| - 0.06 12.9 0.0 0.06 12.9 0.0 1.2 1 0 0 1 1 1 0 HemY protein N-terminus SieB PF14163.1 gi|410669882|ref|YP_006922253.1| - 0.074 12.6 0.1 0.079 12.5 0.0 1.1 1 0 0 1 1 1 0 Superinfection exclusion protein B DUF2207 PF09972.4 gi|410669882|ref|YP_006922253.1| - 0.077 11.5 0.0 0.077 11.5 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Hum_adeno_E3A PF05393.6 gi|410669882|ref|YP_006922253.1| - 0.084 12.5 0.1 0.099 12.3 0.0 1.1 1 0 0 1 1 1 0 Human adenovirus early E3A glycoprotein Protocadherin PF08374.6 gi|410669882|ref|YP_006922253.1| - 0.11 12.1 0.0 0.12 12.0 0.0 1.0 1 0 0 1 1 1 0 Protocadherin FeoB_C PF07664.7 gi|410669882|ref|YP_006922253.1| - 0.13 11.7 1.5 0.19 11.1 1.0 1.3 1 0 0 1 1 1 0 Ferrous iron transport protein B C terminus Pyridox_oxidase PF01243.15 gi|410669883|ref|YP_006922254.1| - 4.4e-08 33.0 0.0 6e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_oxidase_2 PF13883.1 gi|410669883|ref|YP_006922254.1| - 0.00023 20.9 0.1 0.0003 20.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF3303 PF11746.3 gi|410669884|ref|YP_006922255.1| - 5.3e-09 36.3 0.1 6.3e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3303) RepA_N PF06970.6 gi|410669884|ref|YP_006922255.1| - 0.045 13.5 0.0 0.087 12.6 0.0 1.6 1 0 0 1 1 1 0 Replication initiator protein A (RepA) N-terminus Pyridox_ox_2 PF12900.2 gi|410669886|ref|YP_006922257.1| - 4.3e-29 101.1 0.0 4.8e-29 101.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|410669886|ref|YP_006922257.1| - 3e-17 62.4 0.0 4e-17 61.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase FMN_bind_2 PF04299.7 gi|410669886|ref|YP_006922257.1| - 0.0069 15.8 0.1 0.09 12.2 0.0 2.0 2 0 0 2 2 2 1 Putative FMN-binding domain Pyrid_oxidase_2 PF13883.1 gi|410669886|ref|YP_006922257.1| - 0.022 14.5 0.0 0.028 14.1 0.0 1.1 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase PSI_PsaE PF02427.12 gi|410669886|ref|YP_006922257.1| - 0.088 12.1 0.3 0.26 10.6 0.0 1.8 2 0 0 2 2 2 0 Photosystem I reaction centre subunit IV / PsaE Fasciclin PF02469.17 gi|410669888|ref|YP_006922259.1| - 1.7e-39 134.7 0.1 2.3e-39 134.2 0.1 1.2 1 0 0 1 1 1 1 Fasciclin domain SBP_bac_3 PF00497.15 gi|410669888|ref|YP_006922259.1| - 0.00089 18.5 0.2 0.0011 18.3 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 DUF4098 PF13345.1 gi|410669888|ref|YP_006922259.1| - 0.17 11.8 4.3 0.078 12.9 1.4 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4098) Lambda_Bor PF06291.6 gi|410669888|ref|YP_006922259.1| - 0.19 11.6 1.1 0.42 10.5 0.2 2.0 2 1 0 2 2 2 0 Bor protein Fasciclin PF02469.17 gi|410669889|ref|YP_006922260.1| - 9.3e-13 48.3 1.4 9.9e-13 48.2 1.0 1.0 1 0 0 1 1 1 1 Fasciclin domain DUF4098 PF13345.1 gi|410669889|ref|YP_006922260.1| - 0.0061 16.4 2.6 0.007 16.2 1.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4098) DUF211 PF02680.9 gi|410669889|ref|YP_006922260.1| - 0.2 11.4 2.2 0.28 11.0 1.5 1.4 1 1 0 1 1 1 0 Uncharacterized ArCR, COG1888 DUF169 PF02596.10 gi|410669890|ref|YP_006922261.1| - 7.6e-61 205.2 0.1 8.8e-61 205.0 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Arch_flagellin PF01917.11 gi|410669891|ref|YP_006922262.1| - 4.5e-20 72.0 4.2 1.1e-19 70.8 2.9 1.6 1 0 0 1 1 1 1 Archaebacterial flagellin CAF-1_p150 PF11600.3 gi|410669891|ref|YP_006922262.1| - 0.025 13.9 7.4 0.037 13.3 5.1 1.2 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal YjgP_YjgQ PF03739.9 gi|410669891|ref|YP_006922262.1| - 0.032 12.9 0.6 0.049 12.3 0.4 1.2 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family DUF4337 PF14235.1 gi|410669891|ref|YP_006922262.1| - 2.5 7.9 6.0 4.2 7.1 4.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) Nitro_FeMo-Co PF02579.12 gi|410669892|ref|YP_006922263.1| - 0.0017 18.3 0.0 0.0017 18.3 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor WRKY PF03106.10 gi|410669892|ref|YP_006922263.1| - 0.073 12.9 0.3 0.093 12.5 0.2 1.2 1 0 0 1 1 1 0 WRKY DNA -binding domain DUF4131 PF13567.1 gi|410669896|ref|YP_006922267.1| - 7.8 5.8 7.4 9.7 5.5 5.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) PspC PF04024.7 gi|410669897|ref|YP_006922268.1| - 6.5e-21 73.5 0.1 6.5e-21 73.5 0.1 2.1 2 0 0 2 2 2 1 PspC domain DUF2848 PF11010.3 gi|410669897|ref|YP_006922268.1| - 0.039 13.4 0.0 0.05 13.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2848) DUF4574 PF15141.1 gi|410669897|ref|YP_006922268.1| - 0.092 12.4 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4574) Prismane PF03063.15 gi|410669900|ref|YP_006922271.1| - 4.9e-131 437.6 0.0 5.7e-131 437.4 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Destabilase PF05497.7 gi|410669901|ref|YP_006922272.1| - 0.0049 16.9 1.1 0.0052 16.8 0.7 1.1 1 0 0 1 1 1 1 Destabilase CBM_14 PF01607.19 gi|410669901|ref|YP_006922272.1| - 1 9.3 4.1 0.36 10.7 0.4 1.9 2 1 0 2 2 2 0 Chitin binding Peritrophin-A domain PfkB PF00294.19 gi|410669903|ref|YP_006922274.1| - 1.3e-41 142.6 0.0 1.6e-41 142.3 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|410669903|ref|YP_006922274.1| - 2.4e-08 33.5 0.1 3.6e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|410669903|ref|YP_006922274.1| - 0.00073 18.8 0.2 0.001 18.3 0.1 1.1 1 0 0 1 1 1 1 Carbohydrate kinase Phosphorylase PF00343.15 gi|410669904|ref|YP_006922275.1| - 9.3e-24 83.3 0.1 1.4e-14 52.9 0.0 3.4 3 1 1 4 4 4 3 Carbohydrate phosphorylase YhzD PF14120.1 gi|410669904|ref|YP_006922275.1| - 0.033 14.1 0.1 0.11 12.4 0.1 1.9 1 0 0 1 1 1 0 YhzD-like protein adh_short PF00106.20 gi|410669905|ref|YP_006922276.1| - 5.2e-32 111.0 0.4 6.3e-32 110.7 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|410669905|ref|YP_006922276.1| - 2.4e-24 86.4 0.0 3.4e-24 85.9 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|410669905|ref|YP_006922276.1| - 1.7e-16 60.4 0.1 2.3e-16 59.9 0.1 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|410669905|ref|YP_006922276.1| - 0.00099 19.1 0.2 0.0017 18.3 0.1 1.4 1 1 0 1 1 1 1 NADH(P)-binding Shikimate_DH PF01488.15 gi|410669905|ref|YP_006922276.1| - 0.0079 16.2 0.5 0.014 15.5 0.4 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.14 gi|410669905|ref|YP_006922276.1| - 0.012 14.7 0.3 0.029 13.4 0.2 1.6 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DFP PF04127.10 gi|410669905|ref|YP_006922276.1| - 0.035 13.7 0.1 0.085 12.4 0.1 1.6 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein Epimerase PF01370.16 gi|410669905|ref|YP_006922276.1| - 0.052 12.9 0.2 0.11 11.8 0.2 1.6 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family Glyco_transf_4 PF13439.1 gi|410669905|ref|YP_006922276.1| - 0.13 11.9 0.1 0.92 9.2 0.0 2.1 2 1 0 2 2 2 0 Glycosyltransferase Family 4 OrfB_IS605 PF01385.14 gi|410669907|ref|YP_006922278.1| - 5.8e-47 159.9 4.1 8.5e-47 159.4 2.8 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|410669907|ref|YP_006922278.1| - 5.6e-26 90.0 0.2 1.2e-25 88.8 0.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|410669907|ref|YP_006922278.1| - 3.3e-16 58.3 1.8 7.2e-16 57.2 1.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain zf-ribbon_3 PF13248.1 gi|410669907|ref|YP_006922278.1| - 0.005 16.0 0.6 0.013 14.6 0.4 1.7 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|410669907|ref|YP_006922278.1| - 0.0056 16.4 0.3 0.017 14.9 0.2 1.8 1 0 0 1 1 1 1 Double zinc ribbon FYVE PF01363.16 gi|410669907|ref|YP_006922278.1| - 0.025 14.4 0.2 0.075 12.9 0.1 1.8 1 0 0 1 1 1 0 FYVE zinc finger TF_Zn_Ribbon PF08271.7 gi|410669907|ref|YP_006922278.1| - 0.03 13.6 0.1 6.6 6.1 0.0 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|410669907|ref|YP_006922278.1| - 0.072 12.6 3.9 0.49 9.9 2.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|410669907|ref|YP_006922278.1| - 0.43 10.1 3.0 1.2 8.6 0.9 2.6 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF3781 PF12636.2 gi|410669907|ref|YP_006922278.1| - 1.3 9.0 6.9 0.18 11.8 0.7 2.7 3 1 0 3 3 3 0 Protein of unknown function (DUF3781) Y1_Tnp PF01797.11 gi|410669908|ref|YP_006922279.1| - 1.3e-12 47.5 0.1 1.6e-12 47.3 0.1 1.1 1 0 0 1 1 1 1 Transposase IS200 like DUF457 PF04307.9 gi|410669909|ref|YP_006922280.1| - 5.2e-09 35.6 5.0 5.8e-09 35.4 3.5 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF3272 PF11676.3 gi|410669909|ref|YP_006922280.1| - 0.019 14.9 0.9 0.039 13.9 0.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3272) YrhK PF14145.1 gi|410669909|ref|YP_006922280.1| - 0.027 14.1 1.2 0.049 13.2 0.0 1.9 2 0 0 2 2 2 0 YrhK-like protein FtsX PF02687.16 gi|410669909|ref|YP_006922280.1| - 0.084 12.6 0.3 0.084 12.6 0.2 1.5 2 0 0 2 2 2 0 FtsX-like permease family TrkH PF02386.11 gi|410669910|ref|YP_006922281.1| - 3.8e-61 206.6 19.4 3.8e-61 206.6 13.4 2.1 1 1 1 2 2 2 1 Cation transport protein FWWh PF14922.1 gi|410669910|ref|YP_006922281.1| - 0.2 11.1 2.5 0.42 10.0 1.7 1.5 1 0 0 1 1 1 0 Protein of unknown function S-layer PF07752.6 gi|410669911|ref|YP_006922282.1| - 3.5e-94 314.8 16.0 5.9e-55 186.2 2.6 2.3 2 0 0 2 2 2 2 S-layer protein Peptidase_C1 PF00112.18 gi|410669911|ref|YP_006922282.1| - 2.4e-22 79.9 0.1 4.2e-22 79.1 0.0 1.4 1 0 0 1 1 1 1 Papain family cysteine protease Band_7 PF01145.20 gi|410669912|ref|YP_006922283.1| - 1.3e-35 122.9 4.7 1.8e-35 122.4 3.2 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Glyco_hydro_80 PF13647.1 gi|410669912|ref|YP_006922283.1| - 0.01 15.1 0.1 0.014 14.7 0.1 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 80 of chitosanase A Band_7_1 PF13421.1 gi|410669912|ref|YP_006922283.1| - 0.011 15.2 0.1 0.021 14.3 0.0 1.6 1 0 0 1 1 1 0 SPFH domain-Band 7 family NurA PF09376.5 gi|410669912|ref|YP_006922283.1| - 0.083 12.3 0.1 0.095 12.1 0.1 1.2 1 0 0 1 1 1 0 NurA domain Hexapep PF00132.19 gi|410669913|ref|YP_006922284.1| - 1.1e-29 100.6 21.5 1.1e-08 34.1 1.7 5.4 4 1 2 6 6 6 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|410669913|ref|YP_006922284.1| - 4.5e-17 61.2 18.9 4.2e-05 23.0 0.2 5.1 5 0 0 5 5 5 4 Hexapeptide repeat of succinyl-transferase MinC_C PF03775.11 gi|410669913|ref|YP_006922284.1| - 1 8.9 6.1 1.2 8.8 1.0 2.5 2 1 0 2 2 2 0 Septum formation inhibitor MinC, C-terminal domain DegT_DnrJ_EryC1 PF01041.12 gi|410669914|ref|YP_006922285.1| - 1.1e-133 445.8 0.1 1.2e-133 445.6 0.1 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|410669914|ref|YP_006922285.1| - 4e-07 29.4 0.9 1.8e-06 27.3 0.6 1.9 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|410669914|ref|YP_006922285.1| - 9.8e-05 20.7 0.0 0.00017 20.0 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme zf-rbx1 PF12678.2 gi|410669914|ref|YP_006922285.1| - 0.074 13.1 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 RING-H2 zinc finger GFO_IDH_MocA PF01408.17 gi|410669915|ref|YP_006922286.1| - 3.8e-29 101.6 0.4 6.5e-29 100.8 0.3 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|410669915|ref|YP_006922286.1| - 4.8e-06 26.3 0.1 1.1e-05 25.1 0.0 1.7 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain DapB_N PF01113.15 gi|410669915|ref|YP_006922286.1| - 0.0011 18.9 0.5 0.0074 16.2 0.2 2.2 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus OCD_Mu_crystall PF02423.10 gi|410669915|ref|YP_006922286.1| - 0.0013 17.5 0.2 0.0023 16.7 0.1 1.4 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family CoA_binding PF02629.14 gi|410669915|ref|YP_006922286.1| - 0.002 18.5 0.5 0.0053 17.2 0.4 1.7 1 0 0 1 1 1 1 CoA binding domain Semialdhyde_dh PF01118.19 gi|410669915|ref|YP_006922286.1| - 0.008 16.4 0.1 0.014 15.6 0.1 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|410669915|ref|YP_006922286.1| - 0.0099 15.7 0.3 0.024 14.4 0.2 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|410669915|ref|YP_006922286.1| - 0.019 15.3 0.6 0.041 14.2 0.3 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|410669915|ref|YP_006922286.1| - 0.051 12.7 0.3 0.14 11.3 0.1 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|410669916|ref|YP_006922287.1| - 3.6e-34 117.7 0.0 6.4e-34 116.9 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|410669916|ref|YP_006922287.1| - 6.1e-20 71.3 0.0 1.7e-19 69.9 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.14 gi|410669916|ref|YP_006922287.1| - 7.7e-19 67.7 0.0 1.8e-18 66.5 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain Semialdhyde_dh PF01118.19 gi|410669916|ref|YP_006922287.1| - 0.034 14.4 0.0 2.2 8.5 0.0 2.9 3 0 0 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|410669916|ref|YP_006922287.1| - 0.062 12.4 0.1 6.8 5.8 0.0 2.4 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VanZ PF04892.7 gi|410669917|ref|YP_006922288.1| - 1.3e-15 57.5 1.5 2.3e-15 56.7 1.0 1.4 1 0 0 1 1 1 1 VanZ like family Acyl_transf_3 PF01757.17 gi|410669917|ref|YP_006922288.1| - 0.014 14.2 5.0 0.019 13.8 3.5 1.2 1 0 0 1 1 1 0 Acyltransferase family Endonuclease_NS PF01223.18 gi|410669917|ref|YP_006922288.1| - 0.078 12.5 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 DNA/RNA non-specific endonuclease BatA PF07584.6 gi|410669917|ref|YP_006922288.1| - 0.19 11.9 2.1 0.7 10.1 0.0 2.7 3 0 0 3 3 3 0 Aerotolerance regulator N-terminal FixQ PF05545.6 gi|410669917|ref|YP_006922288.1| - 0.46 10.1 0.0 0.46 10.1 0.0 2.6 4 0 0 4 4 4 0 Cbb3-type cytochrome oxidase component FixQ Epimerase PF01370.16 gi|410669918|ref|YP_006922289.1| - 9.1e-56 188.9 0.0 1.1e-55 188.6 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|410669918|ref|YP_006922289.1| - 2.4e-17 62.5 0.0 3.1e-17 62.1 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|410669918|ref|YP_006922289.1| - 1.3e-16 60.2 0.0 8.2e-15 54.4 0.0 2.2 2 0 0 2 2 2 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|410669918|ref|YP_006922289.1| - 2.1e-16 59.6 0.0 4.9e-16 58.4 0.0 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|410669918|ref|YP_006922289.1| - 1e-11 44.3 0.0 2.3e-09 36.5 0.0 3.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|410669918|ref|YP_006922289.1| - 9.8e-10 38.7 0.0 1.6e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|410669918|ref|YP_006922289.1| - 0.0027 17.6 2.3 0.069 13.0 0.6 2.5 2 1 0 2 2 2 1 short chain dehydrogenase TrkA_N PF02254.13 gi|410669918|ref|YP_006922289.1| - 0.015 15.2 0.0 0.083 12.8 0.0 2.1 2 1 1 3 3 3 0 TrkA-N domain GFA PF04828.9 gi|410669919|ref|YP_006922290.1| - 0.094 12.6 0.5 0.13 12.2 0.3 1.4 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme Glycos_transf_4 PF00953.16 gi|410669920|ref|YP_006922291.1| - 4.8e-27 94.7 18.1 4.8e-27 94.7 12.5 2.1 1 1 1 2 2 2 1 Glycosyl transferase family 4 DUF2179 PF10035.4 gi|410669922|ref|YP_006922293.1| - 0.047 13.2 1.5 0.091 12.3 0.2 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2179) TFIIE-A_C-term PF11521.3 gi|410669922|ref|YP_006922293.1| - 0.13 12.2 0.5 0.21 11.5 0.3 1.5 1 1 0 1 1 1 0 C-terminal general transcription factor TFIIE alpha Plasmid_stabil PF05016.9 gi|410669923|ref|YP_006922294.1| - 8e-09 35.7 0.1 8.8e-09 35.6 0.0 1.0 1 0 0 1 1 1 1 Plasmid stabilisation system protein Plasmid_killer PF05015.8 gi|410669923|ref|YP_006922294.1| - 0.0099 16.0 0.1 0.012 15.6 0.1 1.2 1 0 0 1 1 1 1 Plasmid maintenance system killer protein Mod_r PF07200.8 gi|410669923|ref|YP_006922294.1| - 0.061 13.2 0.3 0.079 12.8 0.2 1.1 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein UPF0262 PF06793.7 gi|410669923|ref|YP_006922294.1| - 0.11 12.1 0.1 0.13 12.0 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0262) FMN_red PF03358.10 gi|410669924|ref|YP_006922295.1| - 5.4e-14 51.9 0.0 1.1e-13 50.9 0.0 1.5 2 0 0 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|410669924|ref|YP_006922295.1| - 9.7e-08 31.7 0.0 1.4e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold DDE_Tnp_1_2 PF13586.1 gi|410669926|ref|YP_006922297.1| - 2.1e-05 24.5 0.2 2.4e-05 24.4 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain Big_1 PF02369.11 gi|410669927|ref|YP_006922298.1| - 1.2e-09 37.9 12.1 1.2e-09 37.9 8.4 2.3 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) DUF4198 PF10670.4 gi|410669927|ref|YP_006922298.1| - 0.025 14.5 0.8 0.067 13.1 0.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4198) DUF824 PF05688.6 gi|410669927|ref|YP_006922298.1| - 1.8 8.2 5.1 0.63 9.7 0.6 2.4 2 1 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) Plasmid_stabil PF05016.9 gi|410669928|ref|YP_006922299.1| - 0.00036 20.8 0.5 0.00038 20.7 0.3 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein DUF1870 PF08965.5 gi|410669928|ref|YP_006922299.1| - 0.078 12.6 0.3 0.09 12.4 0.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1870) DUF2683 PF10884.3 gi|410669929|ref|YP_006922300.1| - 2.8e-25 88.0 1.2 3e-25 87.9 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2683) DDE_3 PF13358.1 gi|410669930|ref|YP_006922301.1| - 2e-23 82.7 0.1 2.8e-23 82.2 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|410669930|ref|YP_006922301.1| - 1.2e-09 38.3 0.0 2.1e-09 37.4 0.0 1.4 2 0 0 2 2 2 1 Integrase core domain DDE_1 PF03184.14 gi|410669930|ref|YP_006922301.1| - 2.2e-08 33.5 0.1 2.5e-08 33.3 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|410669930|ref|YP_006922301.1| - 0.026 13.2 0.0 0.029 13.1 0.0 1.2 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain Ribosomal_S2 PF00318.15 gi|410669930|ref|YP_006922301.1| - 0.032 13.4 2.0 0.36 10.0 1.4 2.0 1 1 0 1 1 1 0 Ribosomal protein S2 DUF3800 PF12686.2 gi|410669930|ref|YP_006922301.1| - 0.061 12.9 0.1 0.067 12.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3800) HTH_29 PF13551.1 gi|410669931|ref|YP_006922302.1| - 6.8e-17 61.6 0.0 1.1e-16 60.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410669931|ref|YP_006922302.1| - 8e-11 42.5 0.3 2.2e-10 41.2 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|410669931|ref|YP_006922302.1| - 4.7e-09 35.6 0.2 1.2e-08 34.3 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|410669931|ref|YP_006922302.1| - 8.2e-07 28.4 0.1 3.1e-06 26.6 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|410669931|ref|YP_006922302.1| - 8.2e-06 25.7 0.0 2e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_21 PF13276.1 gi|410669931|ref|YP_006922302.1| - 0.032 14.2 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 HTH-like domain NosD PF05048.8 gi|410669932|ref|YP_006922303.1| - 4e-26 91.6 75.2 3.7e-18 65.5 23.2 4.1 2 1 0 3 3 3 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|410669932|ref|YP_006922303.1| - 1.4e-19 70.4 82.8 3.5e-06 26.8 10.4 4.7 1 1 1 3 3 3 3 Right handed beta helix region DUF86 PF01934.12 gi|410669933|ref|YP_006922304.1| - 2.6e-23 81.8 0.2 3.2e-23 81.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|410669934|ref|YP_006922305.1| - 0.032 14.5 0.1 0.033 14.5 0.1 1.0 1 0 0 1 1 1 0 Nucleotidyltransferase domain Tcp10_C PF07202.8 gi|410669935|ref|YP_006922306.1| - 0.096 12.2 0.1 0.13 11.8 0.1 1.1 1 0 0 1 1 1 0 T-complex protein 10 C-terminus PKD PF00801.15 gi|410669936|ref|YP_006922307.1| - 3.3e-55 183.7 59.3 4.6e-11 42.3 0.7 6.6 6 0 0 6 6 6 6 PKD domain Beta_helix PF13229.1 gi|410669936|ref|YP_006922307.1| - 2.8e-12 46.6 35.2 7.3e-08 32.3 9.5 4.0 4 2 1 5 5 5 2 Right handed beta helix region Chondroitinas_B PF14592.1 gi|410669936|ref|YP_006922307.1| - 0.00031 19.7 17.1 0.0053 15.6 7.0 3.6 1 1 1 2 2 2 1 Chondroitinase B Big_3_4 PF13754.1 gi|410669936|ref|YP_006922307.1| - 0.0017 18.6 70.4 0.52 10.6 3.4 7.7 6 2 0 6 6 6 6 Bacterial Ig-like domain (group 3) Y_Y_Y PF07495.8 gi|410669936|ref|YP_006922307.1| - 0.0018 18.0 12.4 0.75 9.6 0.0 5.7 6 0 0 6 6 6 2 Y_Y_Y domain REJ PF02010.10 gi|410669936|ref|YP_006922307.1| - 0.0083 14.4 31.2 1.8 6.7 8.5 4.6 1 1 1 2 2 2 2 REJ domain TetM_leader PF08076.6 gi|410669936|ref|YP_006922307.1| - 0.26 10.8 29.1 18 4.9 0.2 6.4 6 0 0 6 6 6 0 Tetracycline resistance determinant leader peptide He_PIG PF05345.7 gi|410669937|ref|YP_006922308.1| - 1.4e-07 31.4 4.3 1.4e-07 31.4 2.9 6.7 8 0 0 8 8 8 1 Putative Ig domain Dockerin_1 PF00404.13 gi|410669937|ref|YP_006922308.1| - 6.9e-07 28.6 6.9 0.011 15.4 1.7 3.2 2 0 0 2 2 2 2 Dockerin type I repeat Polysacc_synt PF01943.12 gi|410669938|ref|YP_006922309.1| - 2.5e-45 154.8 37.5 2.5e-45 154.8 26.0 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|410669938|ref|YP_006922309.1| - 1.3e-16 60.8 29.1 1.3e-16 60.8 20.2 2.3 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|410669938|ref|YP_006922309.1| - 1.2e-14 54.3 18.5 1.2e-14 54.3 12.8 4.7 2 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain MatE PF01554.13 gi|410669938|ref|YP_006922309.1| - 3.9e-12 46.0 19.9 3.9e-12 46.0 13.8 3.3 2 1 0 3 3 3 2 MatE MVIN PF03023.9 gi|410669938|ref|YP_006922309.1| - 6.1e-08 31.5 41.3 7.5e-08 31.2 28.2 1.6 1 1 0 1 1 1 1 MviN-like protein TFCD_C PF12612.3 gi|410669938|ref|YP_006922309.1| - 0.042 13.2 0.1 0.084 12.2 0.1 1.5 1 0 0 1 1 1 0 Tubulin folding cofactor D C terminal DUF2499 PF10693.4 gi|410669938|ref|YP_006922309.1| - 0.43 10.6 10.6 0.13 12.3 4.2 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2499) Glycos_transf_1 PF00534.15 gi|410669939|ref|YP_006922310.1| - 1.3e-42 145.1 0.0 2e-42 144.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|410669939|ref|YP_006922310.1| - 1.7e-22 80.0 0.0 5.9e-22 78.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|410669939|ref|YP_006922310.1| - 3.7e-13 49.5 0.1 7.1e-13 48.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|410669939|ref|YP_006922310.1| - 4.5e-10 39.6 0.0 8.9e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|410669939|ref|YP_006922310.1| - 1.9e-09 37.4 0.9 4.5e-09 36.2 0.6 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|410669939|ref|YP_006922310.1| - 3.4e-06 27.3 0.0 9.7e-06 25.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycogen_syn PF05693.8 gi|410669939|ref|YP_006922310.1| - 0.013 13.7 0.0 0.14 10.3 0.0 2.2 3 0 0 3 3 3 0 Glycogen synthase TLP-20 PF06088.6 gi|410669939|ref|YP_006922310.1| - 0.087 12.5 0.2 11 5.7 0.0 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus telokin-like protein-20 (TLP20) Glycos_transf_1 PF00534.15 gi|410669940|ref|YP_006922311.1| - 1.3e-31 109.2 0.1 2.4e-31 108.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|410669940|ref|YP_006922311.1| - 3.7e-16 59.5 0.0 6.2e-16 58.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|410669940|ref|YP_006922311.1| - 1e-05 25.3 0.1 1.7e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|410669940|ref|YP_006922311.1| - 0.0035 17.5 0.0 0.0068 16.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|410669941|ref|YP_006922312.1| - 6.9e-20 71.1 0.1 1e-18 67.3 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 PMT_2 PF13231.1 gi|410669942|ref|YP_006922313.1| - 0.0042 17.0 25.5 0.0042 17.0 17.7 3.2 2 1 1 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_2 PF00535.21 gi|410669943|ref|YP_006922314.1| - 4.5e-19 68.7 0.0 1.7e-18 66.9 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|410669943|ref|YP_006922314.1| - 1.2e-09 38.3 0.0 7.9e-09 35.6 0.0 1.8 1 1 1 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|410669943|ref|YP_006922314.1| - 0.0075 16.5 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|410669943|ref|YP_006922314.1| - 0.035 13.1 0.0 0.058 12.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase like family 2 DUF2665 PF11654.3 gi|410669943|ref|YP_006922314.1| - 0.071 12.6 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2665) DUF354 PF04007.7 gi|410669944|ref|YP_006922315.1| - 3.5e-25 88.5 0.0 4.4e-25 88.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_4 PF13579.1 gi|410669944|ref|YP_006922315.1| - 0.0001 22.4 0.0 0.00017 21.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|410669944|ref|YP_006922315.1| - 0.0017 18.1 0.0 0.0033 17.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|410669944|ref|YP_006922315.1| - 0.026 14.2 0.0 0.054 13.2 0.0 1.6 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Glyco_trans_1_3 PF13528.1 gi|410669944|ref|YP_006922315.1| - 0.049 12.8 0.0 0.4 9.8 0.0 2.1 1 1 0 1 1 1 0 Glycosyl transferase family 1 Hexapep PF00132.19 gi|410669945|ref|YP_006922316.1| - 2.6e-17 61.4 13.1 9.5e-12 43.8 2.3 4.3 4 0 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|410669945|ref|YP_006922316.1| - 1.1e-10 40.8 9.1 7.4e-09 35.0 1.1 3.1 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase RtcB PF01139.12 gi|410669945|ref|YP_006922316.1| - 0.2 10.5 1.0 0.26 10.2 0.7 1.1 1 0 0 1 1 1 0 tRNA-splicing ligase RtcB FemAB PF02388.11 gi|410669946|ref|YP_006922317.1| - 1.1e-17 63.8 1.4 6.9e-11 41.4 0.0 3.0 2 1 1 3 3 3 3 FemAB family Acetyltransf_6 PF13480.1 gi|410669946|ref|YP_006922317.1| - 6.2e-11 42.4 0.0 1.2e-10 41.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Mig-14 PF07395.6 gi|410669946|ref|YP_006922317.1| - 0.083 11.8 0.1 0.32 9.9 0.0 1.9 2 0 0 2 2 2 0 Mig-14 Exosortase_EpsH PF09721.5 gi|410669948|ref|YP_006922319.1| - 1.7e-22 79.9 27.7 2.2e-22 79.5 19.2 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) Rer1 PF03248.8 gi|410669948|ref|YP_006922319.1| - 0.83 9.2 12.3 1.1 8.8 0.7 2.4 2 0 0 2 2 2 0 Rer1 family Xan_ur_permease PF00860.15 gi|410669949|ref|YP_006922320.1| - 0.012 14.0 4.6 0.013 14.0 3.2 1.0 1 0 0 1 1 1 0 Permease family SPC25 PF06703.6 gi|410669949|ref|YP_006922320.1| - 0.017 14.7 3.1 0.018 14.6 2.1 1.2 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) Acyl_transf_3 PF01757.17 gi|410669949|ref|YP_006922320.1| - 0.035 12.9 7.4 0.043 12.6 5.1 1.0 1 0 0 1 1 1 0 Acyltransferase family DUF4229 PF14012.1 gi|410669949|ref|YP_006922320.1| - 0.079 12.8 9.6 0.11 12.3 6.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) Chordopox_L2 PF05803.7 gi|410669949|ref|YP_006922320.1| - 0.13 11.9 4.4 0.14 11.7 2.6 1.4 1 1 0 1 1 1 0 Chordopoxvirus L2 protein Glucos_trans_II PF14264.1 gi|410669949|ref|YP_006922320.1| - 0.18 10.7 11.0 0.19 10.7 7.6 1.0 1 0 0 1 1 1 0 Glucosyl transferase GtrII YlaH PF14036.1 gi|410669949|ref|YP_006922320.1| - 0.23 11.5 8.1 0.32 11.1 5.6 1.3 1 0 0 1 1 1 0 YlaH-like protein Yip1 PF04893.12 gi|410669949|ref|YP_006922320.1| - 0.35 10.3 8.4 0.46 9.9 5.8 1.1 1 0 0 1 1 1 0 Yip1 domain DUF1230 PF06799.6 gi|410669949|ref|YP_006922320.1| - 0.55 10.0 3.8 0.63 9.9 2.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1230) DUF1469 PF07332.6 gi|410669949|ref|YP_006922320.1| - 0.57 9.9 4.3 0.74 9.5 3.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) NicO PF03824.11 gi|410669949|ref|YP_006922320.1| - 0.68 9.1 6.3 0.82 8.9 4.4 1.0 1 0 0 1 1 1 0 High-affinity nickel-transport protein PGG PF13962.1 gi|410669949|ref|YP_006922320.1| - 0.75 9.4 5.1 0.89 9.1 3.5 1.1 1 0 0 1 1 1 0 Domain of unknown function TcpE PF12648.2 gi|410669949|ref|YP_006922320.1| - 0.87 9.7 7.9 1 9.5 5.5 1.1 1 0 0 1 1 1 0 TcpE family DUF3671 PF12420.3 gi|410669949|ref|YP_006922320.1| - 0.94 9.4 7.4 1.2 9.1 5.1 1.2 1 0 0 1 1 1 0 Protein of unknown function Ion_trans_2 PF07885.11 gi|410669949|ref|YP_006922320.1| - 0.95 9.2 7.8 1.2 8.9 5.4 1.2 1 0 0 1 1 1 0 Ion channel ETRAMP PF09716.5 gi|410669949|ref|YP_006922320.1| - 1.1 9.2 5.3 0.76 9.7 0.2 2.1 1 1 1 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) DUF3816 PF12822.2 gi|410669949|ref|YP_006922320.1| - 1.2 9.0 11.4 1.3 8.9 7.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) VIT1 PF01988.14 gi|410669949|ref|YP_006922320.1| - 1.4 8.3 4.8 1.5 8.2 3.3 1.0 1 0 0 1 1 1 0 VIT family SdpI PF13630.1 gi|410669949|ref|YP_006922320.1| - 1.6 8.4 7.6 2.3 7.9 5.3 1.3 1 0 0 1 1 1 0 SdpI/YhfL protein family RseC_MucC PF04246.7 gi|410669949|ref|YP_006922320.1| - 1.9 8.0 4.6 2.1 7.9 3.2 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Tetraspannin PF00335.15 gi|410669949|ref|YP_006922320.1| - 2.1 7.5 8.1 2.8 7.1 5.6 1.2 1 0 0 1 1 1 0 Tetraspanin family DUF2207 PF09972.4 gi|410669949|ref|YP_006922320.1| - 3.1 6.2 9.7 3.7 6.0 6.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Herpes_LMP1 PF05297.6 gi|410669949|ref|YP_006922320.1| - 5.2 5.8 8.9 5.8 5.7 6.1 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF3810 PF12725.2 gi|410669949|ref|YP_006922320.1| - 6.6 5.5 9.7 7.5 5.3 6.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) DUF347 PF03988.7 gi|410669949|ref|YP_006922320.1| - 7.2 6.5 10.0 0.94 9.4 0.8 2.2 1 1 1 2 2 2 0 Repeat of Unknown Function (DUF347) Peptidase_M48 PF01435.13 gi|410669950|ref|YP_006922321.1| - 9.4e-08 31.8 0.0 1.1e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 OrfB_IS605 PF01385.14 gi|410669951|ref|YP_006922322.1| - 1.8e-46 158.3 0.2 3.2e-46 157.5 0.1 1.4 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|410669951|ref|YP_006922322.1| - 2.3e-24 84.8 0.1 3.8e-24 84.1 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|410669951|ref|YP_006922322.1| - 2.4e-05 23.5 0.8 6.2e-05 22.2 0.5 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain DUF807 PF05660.6 gi|410669951|ref|YP_006922322.1| - 0.043 13.4 0.0 0.1 12.2 0.0 1.6 1 1 0 1 1 1 0 Coxiella burnetii protein of unknown function (DUF807) Tox-PL-2 PF15643.1 gi|410669951|ref|YP_006922322.1| - 0.18 11.7 1.0 0.41 10.6 0.1 2.0 3 0 0 3 3 3 0 Papain fold toxin 2 DUF1616 PF07760.6 gi|410669952|ref|YP_006922323.1| - 1.3e-73 247.6 10.7 9.3e-73 244.8 7.4 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1616) Big_3_4 PF13754.1 gi|410669952|ref|YP_006922323.1| - 8.7e-05 22.7 20.5 0.0084 16.4 2.4 5.1 4 0 0 4 4 4 2 Bacterial Ig-like domain (group 3) YfhO PF09586.5 gi|410669952|ref|YP_006922323.1| - 0.0051 14.9 0.3 0.0086 14.1 0.2 1.3 1 0 0 1 1 1 1 Bacterial membrane protein YfhO DUF2313 PF10076.4 gi|410669952|ref|YP_006922323.1| - 0.011 15.1 0.1 0.45 9.8 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2313) Tetraspannin PF00335.15 gi|410669952|ref|YP_006922323.1| - 7.5 5.7 7.4 1.3e+02 1.6 4.7 2.5 2 1 0 2 2 2 0 Tetraspanin family TOBE PF03459.12 gi|410669953|ref|YP_006922324.1| - 0.023 14.8 0.0 0.18 11.9 0.0 2.3 2 0 0 2 2 2 0 TOBE domain VWA_2 PF13519.1 gi|410669954|ref|YP_006922325.1| - 4.5e-06 26.8 0.0 7.1e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|410669954|ref|YP_006922325.1| - 0.00034 19.8 0.0 0.00062 18.9 0.0 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_3 PF13768.1 gi|410669954|ref|YP_006922325.1| - 0.0042 16.7 0.0 0.0086 15.7 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.9 gi|410669955|ref|YP_006922326.1| - 3.2e-22 78.7 0.0 1.2e-21 76.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|410669955|ref|YP_006922326.1| - 0.00011 21.8 0.0 0.00024 20.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|410669955|ref|YP_006922326.1| - 0.00012 21.6 0.0 0.0011 18.4 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|410669955|ref|YP_006922326.1| - 0.0039 16.3 0.0 0.025 13.7 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|410669955|ref|YP_006922326.1| - 0.051 13.7 0.0 0.25 11.5 0.0 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_PrkA PF08298.6 gi|410669955|ref|YP_006922326.1| - 0.081 11.6 0.0 0.16 10.6 0.0 1.5 1 0 0 1 1 1 0 PrkA AAA domain TOBE PF03459.12 gi|410669957|ref|YP_006922328.1| - 0.039 14.0 0.2 3.8 7.7 0.0 2.7 3 0 0 3 3 3 0 TOBE domain Peptidase_M42 PF05343.9 gi|410669958|ref|YP_006922329.1| - 1.6e-112 375.0 2.9 1.9e-112 374.8 2.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|410669958|ref|YP_006922329.1| - 1.1e-10 41.3 0.0 1.8e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|410669958|ref|YP_006922329.1| - 0.00045 20.0 0.1 0.0027 17.4 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 HMGL-like PF00682.14 gi|410669959|ref|YP_006922330.1| - 7.8e-57 192.6 1.5 7.8e-57 192.6 1.0 1.6 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|410669959|ref|YP_006922330.1| - 1.1e-33 115.8 2.4 2e-33 115.0 1.7 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain TPP_enzyme_N PF02776.13 gi|410669960|ref|YP_006922331.1| - 1.5e-60 203.5 0.1 1.1e-59 200.7 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|410669960|ref|YP_006922331.1| - 1.8e-56 189.9 0.1 3.3e-55 185.8 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|410669960|ref|YP_006922331.1| - 4.9e-46 155.8 0.1 9.4e-46 154.9 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.14 gi|410669960|ref|YP_006922331.1| - 0.038 13.5 2.5 0.046 13.2 0.5 1.9 2 1 0 2 2 2 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Ribosomal_S5 PF00333.15 gi|410669960|ref|YP_006922331.1| - 0.049 13.3 0.0 0.16 11.7 0.0 1.8 1 0 0 1 1 1 0 Ribosomal protein S5, N-terminal domain ALS_ss_C PF10369.4 gi|410669961|ref|YP_006922332.1| - 3.9e-33 113.0 4.0 5.2e-33 112.6 0.9 2.1 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|410669961|ref|YP_006922332.1| - 7.6e-20 70.4 2.0 9.1e-20 70.2 0.2 2.0 2 1 0 2 2 2 1 ACT domain ACT PF01842.20 gi|410669961|ref|YP_006922332.1| - 1.1e-17 63.1 2.2 3.2e-17 61.6 0.1 2.3 2 1 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|410669961|ref|YP_006922332.1| - 1.9e-07 31.3 2.2 2.5e-07 30.9 0.4 1.9 1 1 1 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|410669961|ref|YP_006922332.1| - 0.0066 16.1 1.0 3.8 7.2 0.0 3.3 2 2 0 2 2 2 1 ACT domain NIL PF09383.5 gi|410669961|ref|YP_006922332.1| - 0.012 15.1 0.0 1.4 8.5 0.0 2.3 2 0 0 2 2 2 0 NIL domain SLS PF14611.1 gi|410669961|ref|YP_006922332.1| - 0.033 13.6 0.5 5.6 6.3 0.0 2.1 1 1 0 2 2 2 0 Mitochondrial inner-membrane-bound regulator KH_1 PF00013.24 gi|410669961|ref|YP_006922332.1| - 0.042 13.5 2.6 0.23 11.1 0.6 2.4 2 0 0 2 2 2 0 KH domain YbbR PF07949.7 gi|410669961|ref|YP_006922332.1| - 0.05 13.7 4.3 0.75 9.9 0.9 2.2 2 0 0 2 2 2 0 YbbR-like protein IlvN PF07991.7 gi|410669962|ref|YP_006922333.1| - 9.4e-77 256.0 1.5 1.4e-76 255.4 1.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|410669962|ref|YP_006922333.1| - 2e-53 180.2 0.1 3e-53 179.6 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|410669962|ref|YP_006922333.1| - 4.7e-07 29.7 0.0 7.7e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|410669962|ref|YP_006922333.1| - 9.9e-07 28.0 0.0 1.7e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|410669962|ref|YP_006922333.1| - 1.2e-06 28.8 0.1 2.5e-06 27.8 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.16 gi|410669962|ref|YP_006922333.1| - 0.00012 21.9 0.0 0.00019 21.2 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Oxidored_nitro PF00148.14 gi|410669962|ref|YP_006922333.1| - 0.0025 16.5 0.1 0.0061 15.2 0.0 1.6 2 0 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase ApbA PF02558.11 gi|410669962|ref|YP_006922333.1| - 0.012 15.0 0.1 0.021 14.2 0.1 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.17 gi|410669962|ref|YP_006922333.1| - 0.033 14.7 0.1 0.096 13.2 0.1 1.9 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.13 gi|410669962|ref|YP_006922333.1| - 0.06 13.3 0.1 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_7 PF13241.1 gi|410669962|ref|YP_006922333.1| - 0.093 12.9 0.1 0.27 11.5 0.0 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding Nitroreductase PF00881.19 gi|410669964|ref|YP_006922335.1| - 5.4e-12 45.8 0.2 7e-12 45.4 0.1 1.1 1 0 0 1 1 1 1 Nitroreductase family Topoisom_bac PF01131.15 gi|410669965|ref|YP_006922336.1| - 4.2e-99 332.1 0.0 5.6e-99 331.7 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|410669965|ref|YP_006922336.1| - 6.4e-18 63.9 15.5 1.7e-12 46.6 1.7 3.7 3 0 0 3 3 3 3 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|410669965|ref|YP_006922336.1| - 9e-12 44.8 0.0 3.5e-11 42.9 0.0 2.0 2 0 0 2 2 2 1 Toprim domain DUF2383 PF09537.5 gi|410669965|ref|YP_006922336.1| - 0.069 13.4 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) RNA_POL_M_15KD PF02150.11 gi|410669965|ref|YP_006922336.1| - 0.069 12.8 7.4 3.9 7.2 0.3 3.6 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit RNHCP PF12647.2 gi|410669965|ref|YP_006922336.1| - 2 8.3 8.0 18 5.2 0.1 2.4 2 0 0 2 2 2 0 RNHCP domain OrfB_Zn_ribbon PF07282.6 gi|410669966|ref|YP_006922337.1| - 1.7e-23 82.0 1.0 5.2e-23 80.4 0.7 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|410669966|ref|YP_006922337.1| - 1.8e-14 53.7 4.0 3e-14 52.9 2.8 1.4 1 1 0 1 1 1 1 Probable transposase Baculo_ME53 PF06061.6 gi|410669966|ref|YP_006922337.1| - 0.00042 19.3 2.3 0.00091 18.3 1.3 1.8 1 1 0 1 1 1 1 Baculoviridae ME53 A2L_zn_ribbon PF08792.5 gi|410669966|ref|YP_006922337.1| - 0.00086 18.6 4.0 0.0024 17.2 2.8 1.7 1 0 0 1 1 1 1 A2L zinc ribbon domain Ribosomal_L37ae PF01780.14 gi|410669966|ref|YP_006922337.1| - 0.011 15.6 3.0 0.017 14.9 0.6 2.2 2 0 0 2 2 2 0 Ribosomal L37ae protein family Tnp_zf-ribbon_2 PF13842.1 gi|410669966|ref|YP_006922337.1| - 0.43 11.0 3.4 1 9.7 2.3 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon ThiC PF01964.13 gi|410669967|ref|YP_006922338.1| - 2.7e-185 615.8 0.8 3e-185 615.7 0.5 1.0 1 0 0 1 1 1 1 ThiC family L31 PF09784.4 gi|410669967|ref|YP_006922338.1| - 0.13 12.3 0.0 0.38 10.8 0.0 1.7 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L31 AhpC-TSA PF00578.16 gi|410669968|ref|YP_006922339.1| - 4.4e-33 113.6 0.0 7.6e-33 112.8 0.0 1.4 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.4 gi|410669968|ref|YP_006922339.1| - 5.7e-16 57.8 0.4 1.5e-15 56.5 0.2 1.8 2 0 0 2 2 2 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.5 gi|410669968|ref|YP_006922339.1| - 3e-12 46.3 0.0 4.9e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Redoxin Peptidase_M26_C PF07580.9 gi|410669968|ref|YP_006922339.1| - 0.34 9.1 1.8 0.45 8.7 1.3 1.1 1 0 0 1 1 1 0 M26 IgA1-specific Metallo-endopeptidase C-terminal region YtxH PF12732.2 gi|410669968|ref|YP_006922339.1| - 0.47 10.8 3.9 2.2 8.7 2.7 2.1 1 1 0 1 1 1 0 YtxH-like protein OrfB_IS605 PF01385.14 gi|410669969|ref|YP_006922340.1| - 5e-47 160.1 4.8 7.4e-47 159.6 3.3 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|410669969|ref|YP_006922340.1| - 4.9e-26 90.1 0.2 1.2e-25 88.8 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|410669969|ref|YP_006922340.1| - 8.5e-18 63.4 1.8 1.8e-17 62.3 1.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain zf-ribbon_3 PF13248.1 gi|410669969|ref|YP_006922340.1| - 0.005 16.0 0.6 0.013 14.6 0.4 1.7 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|410669969|ref|YP_006922340.1| - 0.0055 16.4 0.3 0.017 14.9 0.2 1.8 1 0 0 1 1 1 1 Double zinc ribbon FYVE PF01363.16 gi|410669969|ref|YP_006922340.1| - 0.024 14.5 0.2 0.075 12.9 0.1 1.8 1 0 0 1 1 1 0 FYVE zinc finger TF_Zn_Ribbon PF08271.7 gi|410669969|ref|YP_006922340.1| - 0.03 13.6 0.1 6.6 6.1 0.0 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|410669969|ref|YP_006922340.1| - 0.072 12.6 3.9 0.49 9.9 2.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain DUF3781 PF12636.2 gi|410669969|ref|YP_006922340.1| - 0.2 11.6 0.2 0.2 11.6 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3781) zf-NADH-PPase PF09297.6 gi|410669969|ref|YP_006922340.1| - 0.42 10.1 3.0 1.2 8.6 0.9 2.6 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Y1_Tnp PF01797.11 gi|410669970|ref|YP_006922341.1| - 2.2e-40 137.3 0.2 2.5e-40 137.0 0.2 1.1 1 0 0 1 1 1 1 Transposase IS200 like Cupin_2 PF07883.6 gi|410669971|ref|YP_006922342.1| - 1.2e-10 40.7 0.3 1.1e-09 37.6 0.0 2.4 2 0 0 2 2 2 1 Cupin domain Cupin_1 PF00190.17 gi|410669971|ref|YP_006922342.1| - 5.5e-05 22.6 0.1 0.00023 20.6 0.0 2.0 2 1 0 2 2 2 1 Cupin MannoseP_isomer PF01050.13 gi|410669971|ref|YP_006922342.1| - 0.00057 19.5 0.0 0.0016 18.0 0.0 1.6 2 0 0 2 2 2 1 Mannose-6-phosphate isomerase Cupin_6 PF12852.2 gi|410669971|ref|YP_006922342.1| - 0.0098 15.5 0.0 0.25 10.9 0.0 2.2 2 0 0 2 2 2 1 Cupin CENP-C_C PF11699.3 gi|410669971|ref|YP_006922342.1| - 0.012 15.5 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 Mif2/CENP-C like Cache_2 PF08269.6 gi|410669971|ref|YP_006922342.1| - 0.028 14.3 0.0 0.07 13.1 0.0 1.6 1 0 0 1 1 1 0 Cache domain Ectoine_synth PF06339.7 gi|410669971|ref|YP_006922342.1| - 0.031 14.1 0.0 0.08 12.8 0.0 1.6 2 0 0 2 2 2 0 Ectoine synthase GPI PF06560.6 gi|410669971|ref|YP_006922342.1| - 0.048 12.6 0.0 0.11 11.5 0.0 1.6 1 0 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) AraC_binding PF02311.14 gi|410669971|ref|YP_006922342.1| - 0.05 13.2 0.0 0.095 12.3 0.0 1.4 1 0 0 1 1 1 0 AraC-like ligand binding domain Peptidase_M50 PF02163.17 gi|410669972|ref|YP_006922343.1| - 0.026 13.4 3.6 0.22 10.4 2.4 2.5 1 1 0 1 1 1 0 Peptidase family M50 DUF2788 PF10981.3 gi|410669972|ref|YP_006922343.1| - 1.2 8.9 6.2 0.17 11.6 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2788) Peptidase_M50B PF13398.1 gi|410669972|ref|YP_006922343.1| - 2.9 7.2 18.1 0.036 13.4 4.6 2.5 1 1 1 2 2 2 0 Peptidase M50B-like Lactamase_B PF00753.22 gi|410669976|ref|YP_006922347.1| - 2.9e-15 56.4 0.1 3.5e-15 56.1 0.1 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|410669976|ref|YP_006922347.1| - 1.6e-09 37.5 0.0 1.7e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|410669976|ref|YP_006922347.1| - 0.00097 18.8 0.0 0.0016 18.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF134 PF02001.11 gi|410669977|ref|YP_006922348.1| - 5.4e-28 96.9 0.0 6.9e-28 96.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|410669977|ref|YP_006922348.1| - 0.00011 21.5 0.1 0.00016 21.0 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|410669977|ref|YP_006922348.1| - 0.0015 18.1 0.1 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.6 gi|410669977|ref|YP_006922348.1| - 0.0026 17.4 0.2 0.0032 17.1 0.1 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_10 PF04967.7 gi|410669977|ref|YP_006922348.1| - 0.0063 16.0 0.1 0.016 14.7 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|410669977|ref|YP_006922348.1| - 0.0072 15.6 0.1 0.011 15.0 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Nitro_FeMo-Co PF02579.12 gi|410669978|ref|YP_006922349.1| - 5.3e-19 68.0 0.0 6.4e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.12 gi|410669979|ref|YP_006922350.1| - 3e-17 62.4 0.0 4.7e-17 61.8 0.0 1.3 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor CbiA PF01656.18 gi|410669980|ref|YP_006922351.1| - 3.9e-30 104.7 0.0 5.2e-30 104.3 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|410669980|ref|YP_006922351.1| - 3e-14 51.8 11.6 8.4e-07 28.3 1.1 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|410669980|ref|YP_006922351.1| - 9.4e-12 44.2 11.6 8.7e-06 25.3 1.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|410669980|ref|YP_006922351.1| - 3.5e-09 36.9 9.7 0.00023 21.4 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410669980|ref|YP_006922351.1| - 1.5e-08 35.2 7.2 0.00022 21.9 0.1 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|410669980|ref|YP_006922351.1| - 3.6e-07 29.7 13.1 0.0031 17.3 1.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|410669980|ref|YP_006922351.1| - 1.3e-06 28.5 9.4 0.0045 17.2 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410669980|ref|YP_006922351.1| - 3.7e-06 26.6 11.1 5.5e-05 22.8 8.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain ParA PF10609.4 gi|410669980|ref|YP_006922351.1| - 7.8e-06 25.6 1.3 1.1e-05 25.2 0.1 1.8 2 0 0 2 2 2 1 ParA/MinD ATPase like Fer4_21 PF14697.1 gi|410669980|ref|YP_006922351.1| - 1.2e-05 25.0 10.0 1.2e-05 25.0 6.9 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410669980|ref|YP_006922351.1| - 2.4e-05 24.5 7.6 0.037 14.3 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410669980|ref|YP_006922351.1| - 4.7e-05 23.3 13.7 0.048 13.9 1.3 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|410669980|ref|YP_006922351.1| - 0.00015 21.7 14.2 0.033 14.2 0.9 2.7 2 1 2 4 4 3 3 4Fe-4S dicluster domain AAA_26 PF13500.1 gi|410669980|ref|YP_006922351.1| - 0.00026 20.6 0.2 0.0074 15.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_31 PF13614.1 gi|410669980|ref|YP_006922351.1| - 0.00072 19.5 0.0 0.0035 17.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|410669980|ref|YP_006922351.1| - 0.0016 17.5 0.1 0.0024 16.9 0.1 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_19 PF13245.1 gi|410669980|ref|YP_006922351.1| - 0.0029 17.3 0.1 0.25 11.1 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain Fer4_3 PF12798.2 gi|410669980|ref|YP_006922351.1| - 0.008 16.6 24.3 0.0096 16.4 5.5 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_NifH PF00142.13 gi|410669980|ref|YP_006922351.1| - 0.0097 15.1 0.0 1.1 8.4 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|410669980|ref|YP_006922351.1| - 0.011 14.8 0.0 0.015 14.3 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ Fer4_18 PF13746.1 gi|410669980|ref|YP_006922351.1| - 0.011 16.1 10.1 0.38 11.2 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|410669980|ref|YP_006922351.1| - 0.014 15.9 9.2 0.79 10.3 1.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain AAA_17 PF13207.1 gi|410669980|ref|YP_006922351.1| - 0.081 13.7 0.0 0.15 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|410669980|ref|YP_006922351.1| - 0.16 11.3 0.0 0.33 10.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|410669980|ref|YP_006922351.1| - 0.2 10.5 0.0 0.28 10.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Fer4_13 PF13370.1 gi|410669980|ref|YP_006922351.1| - 2.5 8.5 15.9 5.1 7.5 3.1 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain CbiA PF01656.18 gi|410669981|ref|YP_006922352.1| - 2.8e-30 105.1 0.1 3.4e-30 104.9 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|410669981|ref|YP_006922352.1| - 2.6e-12 45.7 12.8 1.1e-06 27.9 3.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|410669981|ref|YP_006922352.1| - 9.8e-09 35.4 6.6 8e-05 22.9 0.1 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_NifH PF00142.13 gi|410669981|ref|YP_006922352.1| - 2.6e-08 33.3 0.9 0.00011 21.5 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_6 PF12837.2 gi|410669981|ref|YP_006922352.1| - 4.1e-08 32.7 10.9 8.6e-05 22.2 1.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|410669981|ref|YP_006922352.1| - 1.4e-07 30.9 13.1 0.00055 19.6 2.0 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_19 PF13245.1 gi|410669981|ref|YP_006922352.1| - 4.8e-07 29.4 0.7 0.0092 15.7 0.1 2.4 2 0 0 2 2 2 2 Part of AAA domain Fer4_10 PF13237.1 gi|410669981|ref|YP_006922352.1| - 1e-06 28.4 7.2 1e-06 28.4 5.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410669981|ref|YP_006922352.1| - 3.1e-06 27.8 8.7 0.00027 21.6 0.2 2.8 2 1 1 3 3 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|410669981|ref|YP_006922352.1| - 1.6e-05 24.6 10.7 1.6e-05 24.6 7.4 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain ParA PF10609.4 gi|410669981|ref|YP_006922352.1| - 2.1e-05 24.3 0.1 4.5e-05 23.2 0.0 1.7 1 0 0 1 1 1 1 ParA/MinD ATPase like Fer4_9 PF13187.1 gi|410669981|ref|YP_006922352.1| - 3e-05 24.1 20.8 0.0004 20.5 7.4 2.5 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|410669981|ref|YP_006922352.1| - 5.2e-05 23.7 6.6 0.0021 18.6 0.2 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain AAA_22 PF13401.1 gi|410669981|ref|YP_006922352.1| - 0.00048 20.2 0.2 0.0052 16.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|410669981|ref|YP_006922352.1| - 0.00051 19.6 0.0 0.069 12.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain GTP_EFTU PF00009.22 gi|410669981|ref|YP_006922352.1| - 0.0012 18.2 0.4 0.024 14.0 0.0 2.1 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Fer4_17 PF13534.1 gi|410669981|ref|YP_006922352.1| - 0.0017 18.6 8.0 0.063 13.6 0.1 2.6 3 0 0 3 3 2 2 4Fe-4S dicluster domain AAA_25 PF13481.1 gi|410669981|ref|YP_006922352.1| - 0.0021 17.4 0.1 0.067 12.5 0.1 2.3 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|410669981|ref|YP_006922352.1| - 0.0023 18.7 0.2 0.15 12.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|410669981|ref|YP_006922352.1| - 0.0028 16.7 2.7 0.01 14.9 0.5 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase PhoH PF02562.11 gi|410669981|ref|YP_006922352.1| - 0.0057 15.9 0.9 0.3 10.3 0.6 2.2 2 0 0 2 2 2 1 PhoH-like protein Fer4_8 PF13183.1 gi|410669981|ref|YP_006922352.1| - 0.0058 16.6 12.2 0.028 14.4 0.3 2.6 2 1 2 4 4 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410669981|ref|YP_006922352.1| - 0.0065 16.7 18.5 0.024 14.9 0.9 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain AAA_30 PF13604.1 gi|410669981|ref|YP_006922352.1| - 0.012 15.2 0.9 0.36 10.3 0.1 2.8 2 1 1 3 3 3 0 AAA domain IstB_IS21 PF01695.12 gi|410669981|ref|YP_006922352.1| - 0.016 14.6 0.1 0.86 8.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein RuvB_N PF05496.7 gi|410669981|ref|YP_006922352.1| - 0.018 14.0 0.1 0.29 10.1 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus ABC_tran PF00005.22 gi|410669981|ref|YP_006922352.1| - 0.022 15.0 0.1 0.18 12.0 0.0 2.1 2 0 0 2 2 2 0 ABC transporter AAA_16 PF13191.1 gi|410669981|ref|YP_006922352.1| - 0.023 14.6 0.1 0.089 12.7 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain Fer4_13 PF13370.1 gi|410669981|ref|YP_006922352.1| - 0.025 14.9 11.3 0.72 10.2 0.9 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain AAA_13 PF13166.1 gi|410669981|ref|YP_006922352.1| - 0.026 13.0 0.0 0.033 12.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain FTHFS PF01268.14 gi|410669981|ref|YP_006922352.1| - 0.032 12.2 0.0 0.056 11.4 0.0 1.3 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase Mg_chelatase PF01078.16 gi|410669981|ref|YP_006922352.1| - 0.035 13.2 0.0 1.1 8.3 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.1 gi|410669981|ref|YP_006922352.1| - 0.036 13.5 0.7 0.075 12.5 0.5 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Miro PF08477.8 gi|410669981|ref|YP_006922352.1| - 0.068 13.6 0.1 0.95 9.9 0.0 2.3 2 0 0 2 2 2 0 Miro-like protein T2SE PF00437.15 gi|410669981|ref|YP_006922352.1| - 0.073 11.9 0.0 0.14 11.0 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein KaiC PF06745.8 gi|410669981|ref|YP_006922352.1| - 0.077 12.0 0.3 0.19 10.8 0.2 1.7 1 0 0 1 1 1 0 KaiC c-SKI_SMAD_bind PF08782.5 gi|410669981|ref|YP_006922352.1| - 0.081 13.0 1.9 0.17 12.0 1.3 1.6 1 0 0 1 1 1 0 c-SKI Smad4 binding domain DUF258 PF03193.11 gi|410669981|ref|YP_006922352.1| - 0.089 11.9 0.2 0.55 9.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|410669981|ref|YP_006922352.1| - 0.099 12.9 1.2 0.18 12.1 0.9 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|410669981|ref|YP_006922352.1| - 0.11 12.0 0.1 0.56 9.8 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA PF00004.24 gi|410669981|ref|YP_006922352.1| - 0.12 12.6 0.0 1.6 8.9 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|410669981|ref|YP_006922352.1| - 0.12 11.3 0.1 0.83 8.5 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.1 gi|410669981|ref|YP_006922352.1| - 0.15 12.0 0.3 0.37 10.7 0.2 1.6 2 0 0 2 2 1 0 AAA domain Ras PF00071.17 gi|410669981|ref|YP_006922352.1| - 0.16 11.3 0.2 9.1 5.6 0.0 2.2 2 0 0 2 2 2 0 Ras family NB-ARC PF00931.17 gi|410669981|ref|YP_006922352.1| - 0.19 10.5 0.9 0.81 8.4 0.2 2.0 2 0 0 2 2 2 0 NB-ARC domain Cation_efflux PF01545.16 gi|410669982|ref|YP_006922353.1| - 2.1e-58 197.6 9.6 2.5e-58 197.3 6.7 1.0 1 0 0 1 1 1 1 Cation efflux family MarC PF01914.12 gi|410669983|ref|YP_006922354.1| - 7.8e-57 191.6 17.1 8.9e-57 191.4 11.8 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein E1-E2_ATPase PF00122.15 gi|410669984|ref|YP_006922355.1| - 4.2e-67 225.5 0.6 4.2e-67 225.5 0.4 2.9 2 1 1 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|410669984|ref|YP_006922355.1| - 2.9e-47 160.5 1.1 2.9e-47 160.5 0.7 2.3 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|410669984|ref|YP_006922355.1| - 1.3e-34 120.4 0.0 3.5e-34 119.1 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|410669984|ref|YP_006922355.1| - 1e-19 70.2 0.0 6.1e-19 67.7 0.0 2.2 2 0 0 2 2 2 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|410669984|ref|YP_006922355.1| - 5.3e-17 62.6 0.0 1.1e-16 61.5 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|410669984|ref|YP_006922355.1| - 2.7e-15 55.5 0.2 7.2e-15 54.2 0.1 1.8 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|410669984|ref|YP_006922355.1| - 5.1e-09 36.0 2.9 7.7e-06 25.6 1.5 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase PTS-HPr PF00381.14 gi|410669984|ref|YP_006922355.1| - 0.069 13.0 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 PTS HPr component phosphorylation site Bac_rhamnosid_N PF08531.5 gi|410669984|ref|YP_006922355.1| - 0.23 10.9 0.0 0.38 10.2 0.0 1.2 1 0 0 1 1 1 0 Alpha-L-rhamnosidase N-terminal domain Glycogen_syn PF05693.8 gi|410669985|ref|YP_006922356.1| - 3.4e-17 61.9 0.1 5.1e-09 34.9 0.0 2.8 3 1 0 3 3 3 2 Glycogen synthase Glycos_transf_1 PF00534.15 gi|410669985|ref|YP_006922356.1| - 0.0045 16.4 0.1 0.022 14.1 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 GalP_UDP_transf PF01087.17 gi|410669986|ref|YP_006922357.1| - 2.6e-13 50.4 0.0 1.5e-12 47.9 0.0 1.9 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain HIT PF01230.18 gi|410669986|ref|YP_006922357.1| - 0.00064 20.2 0.1 0.38 11.3 0.1 2.3 2 0 0 2 2 2 2 HIT domain GalP_UDP_tr_C PF02744.12 gi|410669986|ref|YP_006922357.1| - 0.0069 15.9 0.0 0.0098 15.4 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain Glycos_transf_1 PF00534.15 gi|410669987|ref|YP_006922358.1| - 5.6e-31 107.2 0.0 1.4e-30 105.9 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|410669987|ref|YP_006922358.1| - 1.4e-22 80.5 0.0 2.1e-22 80.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|410669987|ref|YP_006922358.1| - 7e-18 64.9 1.5 1.8e-17 63.6 1.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|410669987|ref|YP_006922358.1| - 1.8e-16 60.4 1.3 1.8e-14 53.8 0.9 2.3 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.1 gi|410669987|ref|YP_006922358.1| - 9.7e-15 54.9 0.0 2.6e-14 53.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|410669987|ref|YP_006922358.1| - 7.2e-12 45.3 0.0 1.5e-11 44.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|410669987|ref|YP_006922358.1| - 0.024 14.9 0.0 0.047 13.9 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 CorA PF01544.13 gi|410669988|ref|YP_006922359.1| - 1.2e-82 277.3 4.6 1.3e-82 277.1 3.2 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF432 PF04254.8 gi|410669989|ref|YP_006922360.1| - 6.9e-39 132.5 0.0 9.9e-39 132.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) MS_channel PF00924.13 gi|410669990|ref|YP_006922361.1| - 1.6e-53 181.1 8.6 2.4e-53 180.5 6.0 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|410669990|ref|YP_006922361.1| - 0.021 14.4 1.5 0.089 12.4 0.4 2.5 2 0 0 2 2 2 0 Conserved TM helix FtsX PF02687.16 gi|410669990|ref|YP_006922361.1| - 0.16 11.7 11.0 0.38 10.5 2.3 2.3 1 1 1 2 2 2 0 FtsX-like permease family Glyco_hydro_57 PF03065.10 gi|410669991|ref|YP_006922362.1| - 1.1e-38 133.0 0.0 8.2e-37 126.9 0.0 2.1 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Glyco_hydro_57 PF03065.10 gi|410669992|ref|YP_006922363.1| - 1.5e-68 231.3 0.0 8.5e-68 228.8 0.0 2.0 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|410669992|ref|YP_006922363.1| - 0.0011 18.5 0.0 0.0019 17.8 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_15 PF00723.16 gi|410669993|ref|YP_006922364.1| - 2.8e-13 49.2 0.0 1.6e-06 26.9 0.0 3.1 2 1 0 2 2 2 2 Glycosyl hydrolases family 15 Prenyltrans_2 PF13249.1 gi|410669993|ref|YP_006922364.1| - 0.054 13.9 0.8 1.9 8.9 0.5 2.8 2 1 1 3 3 3 0 Prenyltransferase-like GDE_C PF06202.9 gi|410669994|ref|YP_006922365.1| - 1.6e-133 445.0 0.0 2.1e-133 444.6 0.0 1.1 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.3 gi|410669994|ref|YP_006922365.1| - 1.7e-74 249.8 0.1 2.3e-74 249.4 0.1 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal DUF608 PF04685.8 gi|410669994|ref|YP_006922365.1| - 1.7e-07 30.3 0.2 3.7e-07 29.2 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF608 Glyco_hydro_100 PF12899.2 gi|410669994|ref|YP_006922365.1| - 0.0015 17.0 0.2 0.13 10.6 0.0 2.3 2 0 0 2 2 2 2 Alkaline and neutral invertase DUF2582 PF10771.4 gi|410669995|ref|YP_006922366.1| - 1.7e-18 66.1 0.0 1.9e-18 66.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2582) 2-Hacid_dh_C PF02826.14 gi|410669996|ref|YP_006922367.1| - 8.3e-65 217.2 0.0 1.4e-64 216.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|410669996|ref|YP_006922367.1| - 2e-26 92.0 0.0 2.2e-26 91.8 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|410669996|ref|YP_006922367.1| - 0.0038 17.0 0.1 0.0084 15.9 0.1 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.17 gi|410669996|ref|YP_006922367.1| - 0.0067 16.9 0.0 0.016 15.7 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|410669996|ref|YP_006922367.1| - 0.009 16.4 0.3 0.045 14.1 0.0 2.3 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.16 gi|410669996|ref|YP_006922367.1| - 0.11 12.3 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain SnoaL_4 PF13577.1 gi|410669997|ref|YP_006922368.1| - 0.026 14.4 0.0 0.032 14.1 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like domain DUF4010 PF13194.1 gi|410669998|ref|YP_006922369.1| - 8.6e-42 142.8 25.5 8.6e-42 142.8 17.7 2.8 2 1 1 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|410669998|ref|YP_006922369.1| - 5.3e-16 58.6 9.9 5.3e-16 58.6 6.8 3.3 3 1 2 5 5 5 1 MgtC family RAMP PF04901.8 gi|410669998|ref|YP_006922369.1| - 9.8 5.9 7.5 0.64 9.7 0.4 2.5 2 1 1 3 3 3 0 Receptor activity modifying family Bac_luciferase PF00296.15 gi|410669999|ref|YP_006922370.1| - 5.8e-17 61.7 0.3 1.3e-08 34.3 0.1 2.0 1 1 1 2 2 2 2 Luciferase-like monooxygenase Peptidase_M50 PF02163.17 gi|410670000|ref|YP_006922371.1| - 1.4e-18 66.5 16.2 2.2e-14 52.8 7.7 2.7 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|410670000|ref|YP_006922371.1| - 0.00018 20.9 10.5 0.00018 20.9 7.3 2.1 1 1 1 2 2 2 1 Peptidase M50B-like PRC PF05239.11 gi|410670001|ref|YP_006922372.1| - 3.7e-14 52.3 0.1 4.5e-14 52.0 0.1 1.1 1 0 0 1 1 1 1 PRC-barrel domain Radical_SAM PF04055.16 gi|410670002|ref|YP_006922373.1| - 1.1e-15 58.1 1.1 3.9e-15 56.4 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|410670002|ref|YP_006922373.1| - 2.4e-07 30.8 2.6 9.3e-07 28.8 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|410670002|ref|YP_006922373.1| - 1.8e-06 28.1 3.3 3.4e-06 27.2 0.0 2.3 1 1 1 2 2 2 1 4Fe-4S single cluster domain Pyrophosphatase PF00719.14 gi|410670003|ref|YP_006922374.1| - 5e-59 198.2 0.0 5.8e-59 198.0 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase S-layer PF07752.6 gi|410670004|ref|YP_006922375.1| - 5.1e-156 517.4 14.6 1.3e-80 270.3 2.4 2.2 2 0 0 2 2 2 2 S-layer protein CARDB PF07705.6 gi|410670004|ref|YP_006922375.1| - 0.00021 21.2 0.4 0.00021 21.2 0.3 3.4 2 1 0 3 3 3 1 CARDB CarboxypepD_reg PF13620.1 gi|410670004|ref|YP_006922375.1| - 0.0014 18.6 12.0 0.0085 16.1 1.3 4.4 3 1 1 4 4 4 1 Carboxypeptidase regulatory-like domain DUF4198 PF10670.4 gi|410670004|ref|YP_006922375.1| - 0.004 17.1 2.7 0.37 10.7 0.4 3.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4198) PKD PF00801.15 gi|410670004|ref|YP_006922375.1| - 0.067 12.9 8.0 4.7 7.0 0.1 4.3 5 0 0 5 5 5 0 PKD domain Big_1 PF02369.11 gi|410670004|ref|YP_006922375.1| - 0.38 10.7 19.0 0.13 12.2 2.6 4.0 3 1 1 4 4 4 0 Bacterial Ig-like domain (group 1) Big_4 PF07532.6 gi|410670004|ref|YP_006922375.1| - 3.2 7.3 7.3 1.2 8.6 0.0 3.6 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 4) EamA PF00892.15 gi|410670005|ref|YP_006922376.1| - 5.4e-34 116.9 32.6 3.5e-17 62.6 7.4 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|410670005|ref|YP_006922376.1| - 3.8e-12 46.3 29.3 7.3e-08 32.6 4.7 3.0 2 1 1 3 3 3 2 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|410670005|ref|YP_006922376.1| - 0.99 9.2 14.0 2 8.2 2.3 2.6 2 1 0 2 2 2 0 Uncharacterised protein family UPF0546 TCR_zetazeta PF11628.3 gi|410670005|ref|YP_006922376.1| - 2.4 7.6 8.4 18 4.9 0.5 4.0 3 1 0 3 3 3 0 T-cell surface glycoprotein CD3 zeta chain TPT PF03151.11 gi|410670005|ref|YP_006922376.1| - 4.5 6.9 22.0 2.3 7.8 4.6 2.9 2 1 0 2 2 2 0 Triose-phosphate Transporter family NYN PF01936.13 gi|410670006|ref|YP_006922377.1| - 3.5e-35 121.4 0.1 4.3e-35 121.1 0.1 1.1 1 0 0 1 1 1 1 NYN domain TPP_enzyme_C PF02775.16 gi|410670006|ref|YP_006922377.1| - 0.15 11.6 0.2 1.3 8.5 0.1 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1-E2_ATPase PF00122.15 gi|410670007|ref|YP_006922378.1| - 1.9e-69 233.1 5.9 1.9e-69 233.1 4.1 2.1 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|410670007|ref|YP_006922378.1| - 6.8e-39 133.2 10.8 6.8e-39 133.2 7.5 2.6 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|410670007|ref|YP_006922378.1| - 5e-33 115.3 0.1 3e-32 112.7 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|410670007|ref|YP_006922378.1| - 2.1e-15 57.3 0.0 1.3e-14 54.7 0.0 2.2 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|410670007|ref|YP_006922378.1| - 1.7e-14 53.0 2.2 2e-14 52.7 0.0 2.4 3 0 0 3 3 3 1 Cation transporter/ATPase, N-terminus Hydrolase_like2 PF13246.1 gi|410670007|ref|YP_006922378.1| - 8.6e-12 44.8 0.0 2.1e-11 43.6 0.0 1.7 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|410670007|ref|YP_006922378.1| - 7e-06 25.7 1.0 0.00013 21.6 0.4 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase P-II PF00543.17 gi|410670008|ref|YP_006922379.1| - 0.00096 19.5 0.0 0.0013 19.1 0.0 1.2 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF1538 PF07556.6 gi|410670009|ref|YP_006922380.1| - 1.1e-71 240.3 23.6 1.2e-71 240.1 16.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) DUF1538 PF07556.6 gi|410670010|ref|YP_006922381.1| - 9.9e-68 227.3 28.2 1.2e-67 227.1 19.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) Ferric_reduct PF01794.14 gi|410670011|ref|YP_006922382.1| - 8.6e-05 22.6 8.6 8.6e-05 22.6 6.0 2.4 2 1 2 4 4 4 1 Ferric reductase like transmembrane component DUF3671 PF12420.3 gi|410670011|ref|YP_006922382.1| - 6.3 6.8 10.4 4.1 7.4 0.6 2.5 2 1 0 2 2 2 0 Protein of unknown function Spore_coat_CotO PF14153.1 gi|410670013|ref|YP_006922384.1| - 0.005 16.2 0.0 0.008 15.6 0.0 1.2 1 1 0 1 1 1 1 Spore coat protein CotO DUF4152 PF13680.1 gi|410670013|ref|YP_006922384.1| - 0.085 11.8 0.1 0.093 11.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4152) Lon_C PF05362.8 gi|410670015|ref|YP_006922386.1| - 4.4e-33 114.3 4.6 7.4e-33 113.5 3.2 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|410670015|ref|YP_006922386.1| - 2.3e-25 89.2 0.1 2.5e-17 62.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|410670015|ref|YP_006922386.1| - 2.6e-17 62.6 0.1 2.9e-10 39.6 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|410670015|ref|YP_006922386.1| - 4e-16 58.9 0.1 3.4e-09 36.3 0.0 2.8 2 0 0 2 2 2 2 Sigma-54 interaction domain ChlI PF13541.1 gi|410670015|ref|YP_006922386.1| - 1.6e-11 43.7 0.6 3.4e-11 42.7 0.4 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.9 gi|410670015|ref|YP_006922386.1| - 3.5e-11 42.9 0.0 0.00017 21.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|410670015|ref|YP_006922386.1| - 3.2e-08 33.8 0.0 0.012 15.8 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|410670015|ref|YP_006922386.1| - 8.3e-08 31.3 1.6 0.042 12.6 0.0 3.7 4 0 0 4 4 4 2 MCM2/3/5 family Sigma54_activ_2 PF14532.1 gi|410670015|ref|YP_006922386.1| - 2.8e-06 27.4 0.0 0.073 13.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.1 gi|410670015|ref|YP_006922386.1| - 1.3e-05 25.3 0.0 0.0035 17.4 0.0 2.7 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|410670015|ref|YP_006922386.1| - 5.1e-05 22.4 0.0 0.02 13.9 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_3 PF07726.6 gi|410670015|ref|YP_006922386.1| - 0.00011 21.8 0.3 0.34 10.5 0.0 3.0 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|410670015|ref|YP_006922386.1| - 0.00011 21.8 0.0 0.00036 20.2 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain TIP49 PF06068.8 gi|410670015|ref|YP_006922386.1| - 0.00019 20.2 0.0 0.55 8.8 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus L_lac_phage_MSP PF06488.6 gi|410670015|ref|YP_006922386.1| - 0.00057 19.0 0.6 0.0009 18.3 0.4 1.2 1 0 0 1 1 1 1 Lactococcus lactis bacteriophage major structural protein AAA_18 PF13238.1 gi|410670015|ref|YP_006922386.1| - 0.00057 20.1 0.0 0.0015 18.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|410670015|ref|YP_006922386.1| - 0.00098 18.7 0.0 0.0036 16.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|410670015|ref|YP_006922386.1| - 0.0015 17.7 0.0 0.0044 16.2 0.0 1.7 2 0 0 2 2 1 1 PhoH-like protein AAA_16 PF13191.1 gi|410670015|ref|YP_006922386.1| - 0.0018 18.2 0.0 0.061 13.3 0.0 2.8 3 0 0 3 3 3 1 AAA ATPase domain AAA_33 PF13671.1 gi|410670015|ref|YP_006922386.1| - 0.0092 15.8 0.0 0.023 14.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain Parvo_NS1 PF01057.12 gi|410670015|ref|YP_006922386.1| - 0.011 14.5 0.0 0.02 13.7 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_PrkA PF08298.6 gi|410670015|ref|YP_006922386.1| - 0.025 13.3 1.7 0.66 8.5 0.0 2.6 3 0 0 3 3 3 0 PrkA AAA domain IstB_IS21 PF01695.12 gi|410670015|ref|YP_006922386.1| - 0.03 13.7 0.0 0.082 12.3 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_tran PF00005.22 gi|410670015|ref|YP_006922386.1| - 0.038 14.2 0.0 0.1 12.8 0.0 1.7 1 0 0 1 1 1 0 ABC transporter DUF815 PF05673.8 gi|410670015|ref|YP_006922386.1| - 0.044 12.6 0.0 0.092 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) TrwB_AAD_bind PF10412.4 gi|410670015|ref|YP_006922386.1| - 0.05 12.2 0.0 0.093 11.3 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Zeta_toxin PF06414.7 gi|410670015|ref|YP_006922386.1| - 0.051 12.6 0.1 0.12 11.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|410670015|ref|YP_006922386.1| - 0.06 12.9 0.1 0.44 10.1 0.0 2.4 3 0 0 3 3 3 0 NACHT domain DUF2075 PF09848.4 gi|410670015|ref|YP_006922386.1| - 0.1 11.5 0.0 0.21 10.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.17 gi|410670015|ref|YP_006922386.1| - 0.13 12.4 0.0 0.44 10.7 0.0 2.0 2 0 0 2 2 1 0 RNA helicase PmbA_TldD PF01523.11 gi|410670016|ref|YP_006922387.1| - 1.7e-70 237.6 1.5 1.7e-70 237.6 1.0 1.3 2 0 0 2 2 2 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|410670017|ref|YP_006922388.1| - 4.9e-65 219.7 0.2 6.2e-65 219.3 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase CHASE4 PF05228.8 gi|410670018|ref|YP_006922389.1| - 2.4e-33 115.0 0.5 3.9e-33 114.3 0.3 1.4 1 0 0 1 1 1 1 CHASE4 domain HisKA_2 PF07568.7 gi|410670018|ref|YP_006922389.1| - 4.5e-30 103.3 4.8 4.5e-30 103.3 3.3 2.1 2 0 0 2 2 2 1 Histidine kinase HATPase_c PF02518.21 gi|410670018|ref|YP_006922389.1| - 1.5e-12 47.1 0.0 2.8e-12 46.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|410670018|ref|YP_006922389.1| - 2.4e-06 27.3 0.0 5.1e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|410670018|ref|YP_006922389.1| - 2.8e-06 27.6 2.6 3.1e-06 27.5 0.3 2.2 2 0 0 2 2 2 1 HWE histidine kinase HAMP PF00672.20 gi|410670018|ref|YP_006922389.1| - 5.4e-06 26.4 0.1 5.4e-06 26.4 0.1 2.6 3 0 0 3 3 3 1 HAMP domain Response_reg PF00072.19 gi|410670019|ref|YP_006922390.1| - 3.4e-20 72.1 0.1 5.6e-20 71.4 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|410670019|ref|YP_006922390.1| - 6.8e-11 42.4 0.0 1.2e-10 41.6 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|410670019|ref|YP_006922390.1| - 5.6e-08 32.7 0.0 8.8e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|410670019|ref|YP_006922390.1| - 1.8e-06 27.6 0.0 3.8e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|410670019|ref|YP_006922390.1| - 0.0014 18.3 0.0 0.0037 17.0 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.2 gi|410670019|ref|YP_006922390.1| - 0.0015 18.4 0.0 0.0027 17.7 0.0 1.4 1 0 0 1 1 1 1 PAS fold Gar1 PF04410.9 gi|410670019|ref|YP_006922390.1| - 0.17 11.3 0.3 0.34 10.3 0.2 1.4 1 0 0 1 1 1 0 Gar1/Naf1 RNA binding region MFS_1 PF07690.11 gi|410670020|ref|YP_006922391.1| - 1e-62 211.8 41.0 7.4e-36 123.5 13.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|410670020|ref|YP_006922391.1| - 5.9e-11 41.6 42.2 1.9e-09 36.6 9.0 2.9 1 1 2 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|410670020|ref|YP_006922391.1| - 1.3e-09 37.0 27.2 2.9e-08 32.5 17.7 2.7 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|410670020|ref|YP_006922391.1| - 1.6e-08 33.1 18.1 1.2e-05 23.6 0.9 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.2 gi|410670020|ref|YP_006922391.1| - 0.043 13.5 6.4 0.082 12.7 0.0 3.2 3 1 0 3 3 3 0 MFS_1 like family DUF4131 PF13567.1 gi|410670020|ref|YP_006922391.1| - 0.47 9.8 11.3 2.9 7.2 0.5 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) PAP2 PF01569.16 gi|410670021|ref|YP_006922392.1| - 6.4e-11 42.0 7.6 6.4e-11 42.0 5.3 2.7 2 1 1 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|410670021|ref|YP_006922392.1| - 0.00022 20.7 10.4 0.00022 20.7 7.2 1.8 2 1 0 2 2 2 1 PAP2 superfamily Copper-bind PF00127.15 gi|410670022|ref|YP_006922393.1| - 4.3e-06 26.8 0.0 0.002 18.3 0.0 2.1 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|410670022|ref|YP_006922393.1| - 0.00052 19.8 0.0 0.00065 19.5 0.0 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain DNA_ligase_A_M PF01068.16 gi|410670023|ref|YP_006922394.1| - 1.2e-53 181.4 0.0 2.1e-53 180.7 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|410670023|ref|YP_006922394.1| - 2.6e-39 134.8 0.0 4.3e-39 134.1 0.0 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|410670023|ref|YP_006922394.1| - 1.1e-18 67.4 0.0 3.1e-18 65.9 0.0 1.8 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.14 gi|410670023|ref|YP_006922394.1| - 0.033 13.8 0.0 6.2 6.4 0.0 2.9 2 1 0 2 2 2 0 mRNA capping enzyme, catalytic domain Homoserine_dh PF00742.14 gi|410670024|ref|YP_006922395.1| - 5.2e-59 198.9 0.1 1e-58 197.9 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|410670024|ref|YP_006922395.1| - 2.6e-08 34.2 0.1 6e-08 33.0 0.0 1.6 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|410670024|ref|YP_006922395.1| - 0.00076 19.1 0.8 0.0018 17.8 0.5 1.8 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Saccharop_dh_N PF04455.7 gi|410670025|ref|YP_006922396.1| - 0.0019 18.2 1.0 0.019 15.0 0.2 2.0 1 1 1 2 2 2 1 LOR/SDH bifunctional enzyme conserved region Sigma70_r1_1 PF03979.9 gi|410670025|ref|YP_006922396.1| - 0.0059 16.5 0.6 0.02 14.8 0.0 2.0 2 1 0 2 2 2 1 Sigma-70 factor, region 1.1 HTH_27 PF13463.1 gi|410670026|ref|YP_006922397.1| - 0.00029 21.1 0.1 0.0037 17.5 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|410670026|ref|YP_006922397.1| - 0.00048 19.7 0.0 0.0022 17.6 0.0 1.9 2 0 0 2 2 2 1 MarR family CarboxypepD_reg PF13620.1 gi|410670026|ref|YP_006922397.1| - 0.0015 18.5 0.1 0.0027 17.7 0.0 1.5 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|410670026|ref|YP_006922397.1| - 0.0086 16.1 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) HTH_24 PF13412.1 gi|410670026|ref|YP_006922397.1| - 0.016 14.6 0.0 0.03 13.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|410670026|ref|YP_006922397.1| - 0.03 14.0 0.0 0.058 13.1 0.0 1.4 1 0 0 1 1 1 0 MarR family FeoC PF09012.5 gi|410670026|ref|YP_006922397.1| - 0.049 13.3 0.0 0.09 12.4 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator Fe_dep_repress PF01325.14 gi|410670026|ref|YP_006922397.1| - 0.072 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|410670026|ref|YP_006922397.1| - 0.085 12.6 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain FlgD_ig PF13860.1 gi|410670027|ref|YP_006922398.1| - 0.0083 15.8 3.1 0.098 12.4 0.3 3.2 3 1 0 3 3 3 1 FlgD Ig-like domain T2SN PF01203.14 gi|410670027|ref|YP_006922398.1| - 0.079 12.5 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein N Nucleoplasmin PF03066.10 gi|410670027|ref|YP_006922398.1| - 0.099 12.1 6.7 0.25 10.8 4.6 1.6 1 0 0 1 1 1 0 Nucleoplasmin MTS PF05175.9 gi|410670027|ref|YP_006922398.1| - 0.24 10.7 3.9 0.24 10.7 0.1 2.5 2 0 0 2 2 2 0 Methyltransferase small domain NOA36 PF06524.7 gi|410670027|ref|YP_006922398.1| - 0.49 9.6 6.9 1 8.5 4.8 1.5 1 0 0 1 1 1 0 NOA36 protein Repressor_Mnt PF11423.3 gi|410670027|ref|YP_006922398.1| - 4.5 6.6 6.0 24 4.3 3.5 2.4 2 0 0 2 2 2 0 Regulatory protein Mnt Peptidase_M48 PF01435.13 gi|410670029|ref|YP_006922400.1| - 1.5e-36 126.0 0.6 2.2e-36 125.5 0.3 1.4 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|410670029|ref|YP_006922400.1| - 0.00016 20.7 0.1 0.00028 19.9 0.0 1.6 2 0 0 2 2 2 1 BlaR1 peptidase M56 Yip1 PF04893.12 gi|410670029|ref|YP_006922400.1| - 0.0055 16.2 3.2 0.0055 16.2 2.2 2.2 2 0 0 2 2 2 1 Yip1 domain DUF4157 PF13699.1 gi|410670029|ref|YP_006922400.1| - 0.054 13.6 0.4 0.13 12.4 0.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) DUF1282 PF06930.7 gi|410670029|ref|YP_006922400.1| - 0.14 11.7 7.3 0.038 13.6 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1282) NicO PF03824.11 gi|410670029|ref|YP_006922400.1| - 4.6 6.4 11.4 10 5.3 0.2 2.3 2 0 0 2 2 2 0 High-affinity nickel-transport protein DUF2512 PF10710.4 gi|410670029|ref|YP_006922400.1| - 7.1 6.0 7.7 0.21 11.0 0.9 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2512) DUF488 PF04343.8 gi|410670030|ref|YP_006922401.1| - 2.4e-16 60.2 0.0 1.2e-15 57.9 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function, DUF488 PAS_9 PF13426.1 gi|410670031|ref|YP_006922402.1| - 2.6e-38 130.5 0.4 2.1e-11 44.1 0.0 4.7 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.21 gi|410670031|ref|YP_006922402.1| - 2.3e-33 114.2 0.0 5.1e-33 113.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|410670031|ref|YP_006922402.1| - 5.8e-25 87.2 0.0 4.6e-10 39.4 0.0 4.6 4 0 0 4 4 4 4 PAS fold PAS PF00989.19 gi|410670031|ref|YP_006922402.1| - 1.3e-23 82.9 0.0 5.3e-09 35.8 0.0 4.1 4 1 0 4 4 4 3 PAS fold HisKA PF00512.20 gi|410670031|ref|YP_006922402.1| - 1.9e-20 72.6 0.0 1.2e-19 70.0 0.0 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|410670031|ref|YP_006922402.1| - 1e-17 64.1 0.0 4.9e-06 26.5 0.0 5.1 5 1 0 5 5 5 2 PAS fold GAF_2 PF13185.1 gi|410670031|ref|YP_006922402.1| - 1.4e-12 48.2 0.0 4e-05 24.1 0.0 2.5 2 0 0 2 2 2 2 GAF domain PAS_8 PF13188.1 gi|410670031|ref|YP_006922402.1| - 5e-12 45.2 0.2 1.1e-06 28.2 0.0 3.7 3 0 0 3 3 3 2 PAS domain GAF PF01590.21 gi|410670031|ref|YP_006922402.1| - 1.7e-11 44.4 0.0 2.9e-07 30.7 0.0 2.8 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|410670031|ref|YP_006922402.1| - 2.4e-11 43.8 0.1 5.4e-05 23.2 0.0 2.5 2 0 0 2 2 2 2 GAF domain PAS_7 PF12860.2 gi|410670031|ref|YP_006922402.1| - 0.00051 20.0 0.1 26 4.8 0.0 4.8 4 1 0 4 4 4 0 PAS fold DUF2762 PF10960.3 gi|410670031|ref|YP_006922402.1| - 0.0021 17.7 2.9 1.1 9.0 0.0 3.7 3 0 0 3 3 3 2 Protein of unknown function (DUF2762) HATPase_c_3 PF13589.1 gi|410670031|ref|YP_006922402.1| - 0.022 14.4 0.0 0.06 12.9 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EPSP_synthase PF00275.15 gi|410670032|ref|YP_006922403.1| - 3.4e-112 374.9 0.7 3.9e-112 374.7 0.5 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Hydantoinase_A PF01968.13 gi|410670033|ref|YP_006922404.1| - 1.4e-80 270.4 0.8 6.7e-80 268.2 0.0 2.3 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|410670033|ref|YP_006922404.1| - 4.7e-43 146.7 2.3 1.3e-39 135.5 0.1 2.8 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.15 gi|410670033|ref|YP_006922404.1| - 0.00013 21.4 0.7 0.22 10.8 0.0 3.4 4 0 0 4 4 4 2 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.1 gi|410670033|ref|YP_006922404.1| - 0.00024 19.5 1.5 0.089 11.0 0.1 2.2 2 0 0 2 2 2 2 MutL protein FtsA PF14450.1 gi|410670033|ref|YP_006922404.1| - 0.35 10.6 4.5 6 6.7 0.1 3.3 3 0 0 3 3 3 0 Cell division protein FtsA MCR_alpha_N PF02745.10 gi|410670034|ref|YP_006922405.1| - 5.8e-140 465.0 0.9 7.6e-140 464.6 0.6 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|410670034|ref|YP_006922405.1| - 1.9e-66 221.8 4.7 5.7e-66 220.2 3.3 1.9 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MCR_gamma PF02240.11 gi|410670035|ref|YP_006922406.1| - 4.6e-119 396.0 0.2 5.2e-119 395.9 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_C PF04609.7 gi|410670036|ref|YP_006922407.1| - 1.2e-38 132.4 6.6 2.6e-34 118.2 4.6 3.0 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MCR_D PF02505.9 gi|410670037|ref|YP_006922408.1| - 2.1e-48 163.7 0.0 2.5e-48 163.5 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.13 gi|410670038|ref|YP_006922409.1| - 1.3e-128 427.6 5.4 1.3e-128 427.6 3.7 1.6 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|410670038|ref|YP_006922409.1| - 4.7e-79 264.0 5.2 8.1e-79 263.3 3.6 1.4 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain DUF1338 PF07063.8 gi|410670038|ref|YP_006922409.1| - 0.0015 17.6 0.0 0.0022 17.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1338) DUF512 PF04459.7 gi|410670040|ref|YP_006922411.1| - 1.7e-22 79.5 0.0 2.4e-22 79.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF512) Radical_SAM PF04055.16 gi|410670040|ref|YP_006922411.1| - 9.6e-10 38.8 8.0 6.1e-08 33.0 4.7 3.3 2 1 0 2 2 2 1 Radical SAM superfamily PaRep2b PF07775.6 gi|410670040|ref|YP_006922411.1| - 0.014 13.6 0.0 0.019 13.1 0.0 1.1 1 0 0 1 1 1 0 PaRep2b protein PolC_DP2 PF03833.8 gi|410670041|ref|YP_006922412.1| - 0 1227.2 0.1 0 1226.2 0.0 1.5 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 DUF2072 PF09845.4 gi|410670041|ref|YP_006922412.1| - 0.044 13.7 0.2 0.044 13.7 0.1 3.5 2 1 0 3 3 3 0 Zn-ribbon containing protein (DUF2072) DUF555 PF04475.7 gi|410670041|ref|YP_006922412.1| - 0.057 13.4 1.0 1.3 9.0 0.0 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF555) zf-ribbon_3 PF13248.1 gi|410670041|ref|YP_006922412.1| - 0.11 11.7 15.5 1.1 8.5 0.0 4.2 3 1 0 3 3 3 0 zinc-ribbon domain TerY-C PF15616.1 gi|410670041|ref|YP_006922412.1| - 5.5 6.9 18.0 10 6.0 9.1 3.0 2 1 0 2 2 2 0 TerY-C metal binding domain HTH_45 PF14947.1 gi|410670042|ref|YP_006922413.1| - 8.6e-16 57.5 0.5 9e-16 57.4 0.3 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix HemN_C PF06969.11 gi|410670042|ref|YP_006922413.1| - 0.0054 16.7 0.0 0.0063 16.5 0.0 1.2 1 0 0 1 1 1 1 HemN C-terminal domain HTH_24 PF13412.1 gi|410670042|ref|YP_006922413.1| - 0.096 12.0 0.1 0.14 11.5 0.0 1.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF2758 PF10957.3 gi|410670042|ref|YP_006922413.1| - 0.14 11.9 0.1 0.23 11.3 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2758) Fumerase PF05681.9 gi|410670043|ref|YP_006922414.1| - 4.9e-94 314.4 0.0 5.5e-94 314.2 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.7 gi|410670044|ref|YP_006922415.1| - 4.2e-55 186.0 0.0 4.7e-55 185.9 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus T2SF PF00482.18 gi|410670045|ref|YP_006922416.1| - 2.6e-18 66.1 1.1 2.6e-18 66.1 0.7 2.1 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F DUF4448 PF14610.1 gi|410670045|ref|YP_006922416.1| - 0.029 13.8 0.0 0.52 9.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4448) T2SF PF00482.18 gi|410670046|ref|YP_006922417.1| - 1.1e-14 54.3 0.2 1.1e-14 54.3 0.1 2.8 4 0 0 4 4 4 1 Type II secretion system (T2SS), protein F DUF2207 PF09972.4 gi|410670046|ref|YP_006922417.1| - 9.6 4.6 10.3 1.3 7.5 1.1 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) T2SE PF00437.15 gi|410670047|ref|YP_006922418.1| - 7.2e-51 172.6 0.0 1.5e-50 171.6 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|410670047|ref|YP_006922418.1| - 0.049 13.1 0.1 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain CbiA PF01656.18 gi|410670048|ref|YP_006922419.1| - 1.6e-25 89.6 1.4 2.1e-25 89.2 1.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|410670048|ref|YP_006922419.1| - 7.2e-18 65.0 0.0 9.6e-18 64.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|410670048|ref|YP_006922419.1| - 1.7e-07 30.5 0.3 4.5e-07 29.2 0.2 1.6 1 1 0 1 1 1 1 ATPase MipZ YhjQ PF06564.7 gi|410670048|ref|YP_006922419.1| - 2.7e-07 30.2 0.0 4e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 YhjQ protein Fer4_NifH PF00142.13 gi|410670048|ref|YP_006922419.1| - 5.1e-07 29.1 1.6 0.014 14.6 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|410670048|ref|YP_006922419.1| - 2.3e-05 23.8 0.0 3.4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|410670048|ref|YP_006922419.1| - 5.7e-05 22.2 1.6 0.0094 15.0 0.6 2.2 2 0 0 2 2 2 2 Anion-transporting ATPase ParA PF10609.4 gi|410670048|ref|YP_006922419.1| - 0.0066 16.2 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like UPF0228 PF05727.6 gi|410670048|ref|YP_006922419.1| - 0.084 12.6 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0228) DUF367 PF04034.8 gi|410670050|ref|YP_006922421.1| - 6.4e-47 158.3 0.0 7.4e-47 158.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF367) Lysine_decarbox PF03641.9 gi|410670051|ref|YP_006922422.1| - 9.8e-08 31.8 1.0 7.5e-07 29.0 0.1 2.0 2 0 0 2 2 2 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|410670051|ref|YP_006922422.1| - 1.5e-07 30.5 2.7 1.2e-05 24.2 0.8 2.0 1 1 1 2 2 2 2 DNA recombination-mediator protein A Exo_endo_phos PF03372.18 gi|410670052|ref|YP_006922423.1| - 3.4e-28 99.2 0.0 4.1e-28 98.9 0.0 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|410670052|ref|YP_006922423.1| - 5.1e-11 42.2 0.0 9.1e-11 41.4 0.0 1.3 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase DUF1672 PF07901.6 gi|410670052|ref|YP_006922423.1| - 0.093 11.6 0.0 0.17 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1672) AA_permease_2 PF13520.1 gi|410670053|ref|YP_006922424.1| - 1.5e-49 168.7 53.8 2.1e-49 168.2 37.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|410670053|ref|YP_006922424.1| - 8.2e-41 139.8 47.5 1.3e-40 139.2 32.9 1.2 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|410670053|ref|YP_006922424.1| - 6e-28 97.7 0.7 2e-13 50.7 0.3 2.3 2 0 0 2 2 2 2 Universal stress protein family adh_short PF00106.20 gi|410670053|ref|YP_006922424.1| - 0.037 13.9 0.1 0.08 12.8 0.1 1.5 1 0 0 1 1 1 0 short chain dehydrogenase FUR PF01475.14 gi|410670054|ref|YP_006922425.1| - 6e-19 68.1 0.3 6.9e-19 67.9 0.2 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family PadR PF03551.9 gi|410670054|ref|YP_006922425.1| - 0.0055 16.4 0.0 0.015 15.0 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|410670054|ref|YP_006922425.1| - 0.016 14.8 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|410670054|ref|YP_006922425.1| - 0.035 13.4 0.1 0.055 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|410670054|ref|YP_006922425.1| - 0.07 12.9 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain E6 PF00518.12 gi|410670054|ref|YP_006922425.1| - 0.075 13.3 0.4 1.9 8.8 0.0 2.1 1 1 1 2 2 2 0 Early Protein (E6) DUF4182 PF13790.1 gi|410670054|ref|YP_006922425.1| - 0.19 11.5 6.4 0.47 10.2 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4182) AhpC-TSA PF00578.16 gi|410670055|ref|YP_006922426.1| - 3.2e-33 114.0 0.1 4.8e-33 113.4 0.1 1.3 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.4 gi|410670055|ref|YP_006922426.1| - 3.1e-15 55.5 0.5 5.7e-15 54.6 0.3 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.5 gi|410670055|ref|YP_006922426.1| - 5.1e-12 45.5 0.0 7.2e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 Redoxin DUF4511 PF14974.1 gi|410670055|ref|YP_006922426.1| - 0.054 13.2 0.3 0.11 12.2 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4511) Ferritin PF00210.19 gi|410670056|ref|YP_006922427.1| - 1.3e-19 70.3 0.2 1.6e-19 70.0 0.1 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|410670056|ref|YP_006922427.1| - 1.5e-05 25.3 0.1 0.00012 22.4 0.0 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|410670056|ref|YP_006922427.1| - 0.0017 18.2 0.0 0.0069 16.3 0.0 1.8 1 1 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|410670056|ref|YP_006922427.1| - 0.054 13.7 0.4 1.8 8.8 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) DUF455 PF04305.9 gi|410670056|ref|YP_006922427.1| - 0.078 12.2 0.4 3.4 6.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF455) Topoisom_bac PF01131.15 gi|410670057|ref|YP_006922428.1| - 1.6e-117 392.7 0.1 1.6e-117 392.7 0.1 1.9 3 0 0 3 3 3 1 DNA topoisomerase Toprim PF01751.17 gi|410670057|ref|YP_006922428.1| - 1e-14 54.3 0.6 2.5e-14 53.0 0.4 1.7 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|410670057|ref|YP_006922428.1| - 7e-13 47.8 2.1 7e-13 47.8 1.5 2.5 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.1 gi|410670057|ref|YP_006922428.1| - 4.8e-06 26.6 0.2 1.8e-05 24.7 0.1 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|410670057|ref|YP_006922428.1| - 1e-05 24.9 0.0 0.00028 20.3 0.0 2.5 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.3 gi|410670057|ref|YP_006922428.1| - 3.7e-05 23.4 1.0 0.0001 22.1 0.1 2.2 2 0 0 2 2 2 1 IMS family HHH motif Cdd1 PF11731.3 gi|410670057|ref|YP_006922428.1| - 5e-05 23.1 0.2 0.00016 21.5 0.0 1.8 2 0 0 2 2 2 1 Pathogenicity locus BAF PF02961.9 gi|410670057|ref|YP_006922428.1| - 0.12 12.7 0.0 0.27 11.5 0.0 1.5 1 0 0 1 1 1 0 Barrier to autointegration factor Beta-Casp PF10996.3 gi|410670058|ref|YP_006922429.1| - 1.2e-19 70.4 0.0 3.3e-19 69.0 0.0 1.7 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B_2 PF12706.2 gi|410670058|ref|YP_006922429.1| - 2.9e-12 46.5 0.2 4.9e-12 45.7 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|410670058|ref|YP_006922429.1| - 9e-10 38.5 0.6 6.6e-09 35.7 0.4 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|410670058|ref|YP_006922429.1| - 3.6e-08 33.0 0.0 9.5e-08 31.7 0.0 1.8 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|410670058|ref|YP_006922429.1| - 0.00031 20.4 0.0 0.00084 19.0 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain TPR_1 PF00515.23 gi|410670059|ref|YP_006922430.1| - 6.8e-38 126.7 1.2 4.8e-09 35.4 0.0 4.5 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|410670059|ref|YP_006922430.1| - 7.7e-36 121.5 6.1 1.2e-13 50.4 0.0 3.8 2 1 2 4 4 4 4 TPR repeat TPR_2 PF07719.12 gi|410670059|ref|YP_006922430.1| - 1.6e-32 108.7 0.4 2e-07 30.4 0.0 4.9 5 0 0 5 5 4 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|410670059|ref|YP_006922430.1| - 6.3e-26 88.1 5.1 2.3e-06 26.9 0.0 4.7 4 1 1 5 5 4 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|410670059|ref|YP_006922430.1| - 1.1e-19 70.1 0.9 7.7e-08 32.1 0.0 3.4 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|410670059|ref|YP_006922430.1| - 8.8e-18 62.9 2.6 2.8e-05 23.9 0.0 5.6 5 1 0 5 5 5 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|410670059|ref|YP_006922430.1| - 1.8e-16 58.5 1.1 0.0004 19.9 0.0 4.7 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|410670059|ref|YP_006922430.1| - 2.5e-15 55.5 0.0 0.00016 22.0 0.0 4.9 2 1 3 5 5 5 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|410670059|ref|YP_006922430.1| - 1.4e-14 53.6 0.3 0.00014 21.6 0.0 4.2 2 1 2 4 4 4 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|410670059|ref|YP_006922430.1| - 8.7e-14 51.4 4.9 3.8e-06 26.9 0.0 2.5 1 1 2 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_16 PF13432.1 gi|410670059|ref|YP_006922430.1| - 3.6e-13 49.8 0.0 6.2e-06 26.7 0.0 3.3 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|410670059|ref|YP_006922430.1| - 7.7e-09 35.4 0.0 0.16 12.4 0.0 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|410670059|ref|YP_006922430.1| - 1.2e-07 31.9 0.0 0.0019 18.4 0.0 3.1 2 1 1 3 3 3 3 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|410670059|ref|YP_006922430.1| - 5.2e-06 26.2 1.7 0.12 12.2 0.0 3.5 4 0 0 4 4 3 2 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.1 gi|410670059|ref|YP_006922430.1| - 4.3e-05 23.2 0.0 2.2 8.3 0.0 4.3 4 0 0 4 4 4 1 Tetratricopeptide repeat RPN7 PF10602.4 gi|410670059|ref|YP_006922430.1| - 0.00022 20.6 1.9 1.6 8.0 0.0 3.5 1 1 3 4 4 4 2 26S proteasome subunit RPN7 Paf67 PF10255.4 gi|410670059|ref|YP_006922430.1| - 0.00025 20.0 0.5 0.068 12.0 0.0 2.9 1 1 1 3 3 3 1 RNA polymerase I-associated factor PAF67 Coatomer_E PF04733.9 gi|410670059|ref|YP_006922430.1| - 0.0025 17.0 0.0 1.2 8.2 0.0 2.1 1 1 1 2 2 2 2 Coatomer epsilon subunit DUF3856 PF12968.2 gi|410670059|ref|YP_006922430.1| - 0.0042 16.9 1.7 3.6 7.4 0.0 3.5 1 1 3 4 4 4 1 Domain of Unknown Function (DUF3856) PPR PF01535.15 gi|410670059|ref|YP_006922430.1| - 0.016 15.1 2.5 15 5.8 0.1 4.3 4 0 0 4 4 4 0 PPR repeat BTAD PF03704.12 gi|410670059|ref|YP_006922430.1| - 0.031 14.5 0.1 0.24 11.7 0.0 2.2 2 1 0 2 2 2 0 Bacterial transcriptional activator domain NTP_transf_3 PF12804.2 gi|410670061|ref|YP_006922432.1| - 2.1e-31 109.1 0.0 2.6e-31 108.8 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|410670061|ref|YP_006922432.1| - 8.8e-06 25.4 0.0 4e-05 23.2 0.0 2.0 2 1 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|410670061|ref|YP_006922432.1| - 6.4e-05 22.7 0.0 8.1e-05 22.3 0.0 1.3 1 1 0 1 1 1 1 Glycosyl transferase family 2 CofC PF01983.11 gi|410670061|ref|YP_006922432.1| - 0.0012 17.8 0.0 0.0019 17.1 0.0 1.3 1 0 0 1 1 1 1 Guanylyl transferase CofC like DUF2064 PF09837.4 gi|410670061|ref|YP_006922432.1| - 0.043 13.4 0.0 0.062 12.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) DUF460 PF04312.8 gi|410670062|ref|YP_006922433.1| - 5.3e-47 158.8 0.2 1e-46 157.8 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF460) Atg14 PF10186.4 gi|410670062|ref|YP_006922433.1| - 0.0035 16.3 9.0 0.0089 15.0 6.2 1.6 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 DUF869 PF05911.6 gi|410670062|ref|YP_006922433.1| - 0.014 13.6 9.3 0.022 13.0 6.5 1.2 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) CENP-Q PF13094.1 gi|410670062|ref|YP_006922433.1| - 0.017 15.1 10.8 0.046 13.7 7.5 1.7 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit IncA PF04156.9 gi|410670062|ref|YP_006922433.1| - 0.07 12.7 9.4 0.16 11.5 6.5 1.6 1 0 0 1 1 1 0 IncA protein DUF4407 PF14362.1 gi|410670062|ref|YP_006922433.1| - 0.91 8.4 4.8 1.8 7.4 3.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Pox_G5 PF04599.7 gi|410670062|ref|YP_006922433.1| - 5.4 5.5 10.3 6.8 5.2 0.0 2.8 2 1 1 3 3 3 0 Poxvirus G5 protein DUF4164 PF13747.1 gi|410670062|ref|YP_006922433.1| - 7.2 6.8 18.7 11 6.2 0.6 4.1 3 1 1 4 4 4 0 Domain of unknown function (DUF4164) RIO1 PF01163.17 gi|410670063|ref|YP_006922434.1| - 3.6e-40 137.3 0.1 5.3e-40 136.7 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|410670063|ref|YP_006922434.1| - 1.7e-27 95.3 0.1 2.9e-27 94.5 0.1 1.4 1 0 0 1 1 1 1 Rio2, N-terminal Pkinase PF00069.20 gi|410670063|ref|YP_006922434.1| - 5e-06 25.8 0.0 8.3e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|410670063|ref|YP_006922434.1| - 8.4e-05 22.4 0.5 0.048 13.3 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family PqqD PF05402.7 gi|410670063|ref|YP_006922434.1| - 0.14 12.2 0.1 0.36 10.8 0.1 1.7 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) DUF111 PF01969.12 gi|410670064|ref|YP_006922435.1| - 3e-134 447.6 1.5 3.4e-134 447.4 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 AIRC PF00731.15 gi|410670065|ref|YP_006922436.1| - 2e-17 62.8 11.1 1.1e-16 60.4 5.6 2.6 2 1 0 2 2 2 1 AIR carboxylase Potass_KdpF PF09604.5 gi|410670066|ref|YP_006922437.1| - 0.0044 16.8 1.8 0.0044 16.8 1.2 2.5 2 1 0 2 2 2 1 F subunit of K+-transporting ATPase (Potass_KdpF) DUF4013 PF13197.1 gi|410670066|ref|YP_006922437.1| - 0.018 14.3 9.9 0.02 14.2 6.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) DUF486 PF04342.7 gi|410670066|ref|YP_006922437.1| - 0.019 14.9 1.3 0.022 14.7 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF486 FecCD PF01032.13 gi|410670066|ref|YP_006922437.1| - 0.031 13.0 4.6 0.034 12.9 3.2 1.0 1 0 0 1 1 1 0 FecCD transport family Yip1 PF04893.12 gi|410670066|ref|YP_006922437.1| - 0.032 13.7 6.0 0.037 13.5 4.1 1.1 1 0 0 1 1 1 0 Yip1 domain Acyl_transf_3 PF01757.17 gi|410670066|ref|YP_006922437.1| - 0.049 12.4 2.7 0.047 12.5 1.8 1.0 1 0 0 1 1 1 0 Acyltransferase family MMgT PF10270.4 gi|410670066|ref|YP_006922437.1| - 0.095 13.1 3.4 0.11 12.8 2.3 1.1 1 0 0 1 1 1 0 Membrane magnesium transporter PrgI PF12666.2 gi|410670066|ref|YP_006922437.1| - 0.36 10.9 4.8 0.42 10.8 3.4 1.1 1 0 0 1 1 1 0 PrgI family protein Apq12 PF12716.2 gi|410670066|ref|YP_006922437.1| - 0.39 10.4 6.4 0.62 9.8 4.4 1.3 1 0 0 1 1 1 0 Nuclear pore assembly and biogenesis RseC_MucC PF04246.7 gi|410670066|ref|YP_006922437.1| - 0.55 9.7 4.4 0.71 9.4 3.0 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Herpes_LMP1 PF05297.6 gi|410670066|ref|YP_006922437.1| - 0.95 8.3 5.1 1.1 8.1 3.5 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF4131 PF13567.1 gi|410670066|ref|YP_006922437.1| - 1.4 8.3 3.9 1.6 8.0 2.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF983 PF06170.7 gi|410670066|ref|YP_006922437.1| - 2 8.6 4.4 2.5 8.2 3.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF983) ABC2_membrane_2 PF12679.2 gi|410670066|ref|YP_006922437.1| - 4.4 6.0 9.3 5.3 5.8 6.4 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein SdpI PF13630.1 gi|410670066|ref|YP_006922437.1| - 4.8 6.9 8.4 5.8 6.6 5.9 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF202 PF02656.10 gi|410670066|ref|YP_006922437.1| - 7.6 6.8 6.7 14 6.0 4.7 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF2111 PF09884.4 gi|410670067|ref|YP_006922438.1| - 9.5e-34 115.0 2.3 1.3e-33 114.7 1.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) Pyr_redox_2 PF07992.9 gi|410670069|ref|YP_006922440.1| - 1.6e-32 113.0 0.0 7.7e-32 110.8 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|410670069|ref|YP_006922440.1| - 2.5e-16 60.3 1.0 1.7e-10 41.3 0.0 2.5 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|410670069|ref|YP_006922440.1| - 3.4e-15 56.2 9.8 2.9e-12 46.8 0.6 3.9 2 2 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|410670069|ref|YP_006922440.1| - 2.6e-07 29.9 3.9 8.8e-06 24.9 0.2 2.6 2 1 0 2 2 2 2 Thi4 family DAO PF01266.19 gi|410670069|ref|YP_006922440.1| - 3.2e-07 29.5 12.6 3.7e-05 22.8 0.6 3.2 2 2 1 4 4 4 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|410670069|ref|YP_006922440.1| - 4.3e-07 29.1 10.0 6.2e-06 25.3 0.6 3.9 3 1 0 4 4 4 1 FAD binding domain HI0933_like PF03486.9 gi|410670069|ref|YP_006922440.1| - 4.4e-07 28.7 3.5 0.00011 20.8 0.1 3.0 3 0 0 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.2 gi|410670069|ref|YP_006922440.1| - 5.7e-07 28.9 0.5 5.7e-07 28.9 0.4 2.9 3 1 1 4 4 4 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|410670069|ref|YP_006922440.1| - 1.1e-06 27.8 7.4 0.002 17.0 0.8 3.8 3 1 0 4 4 4 2 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|410670069|ref|YP_006922440.1| - 2.5e-06 26.8 1.7 0.00022 20.4 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|410670069|ref|YP_006922440.1| - 2.4e-05 24.2 1.4 2.7e-05 24.0 0.1 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|410670069|ref|YP_006922440.1| - 0.00012 21.1 2.4 0.13 11.1 0.2 2.7 2 1 1 3 3 3 2 Lycopene cyclase protein K_oxygenase PF13434.1 gi|410670069|ref|YP_006922440.1| - 0.00012 21.1 0.2 0.1 11.4 0.0 2.4 2 1 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.1 gi|410670069|ref|YP_006922440.1| - 0.0058 16.8 1.5 0.058 13.6 0.2 2.6 2 1 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_9 PF13454.1 gi|410670069|ref|YP_006922440.1| - 0.013 15.2 1.7 0.95 9.2 0.0 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding FMO-like PF00743.14 gi|410670069|ref|YP_006922440.1| - 0.045 11.9 0.1 0.11 10.6 0.0 1.7 2 1 1 3 3 3 0 Flavin-binding monooxygenase-like wnt PF00110.14 gi|410670069|ref|YP_006922440.1| - 0.14 11.3 0.0 0.27 10.4 0.0 1.4 1 0 0 1 1 1 0 wnt family Thioredoxin_3 PF13192.1 gi|410670070|ref|YP_006922441.1| - 1.6e-13 50.2 0.0 1.9e-13 50.0 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|410670070|ref|YP_006922441.1| - 6.3e-07 29.2 0.0 8.3e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin PF00085.15 gi|410670070|ref|YP_006922441.1| - 1.8e-06 27.5 0.0 2e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|410670070|ref|YP_006922441.1| - 0.00017 21.7 0.4 0.00074 19.6 0.3 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain DUF836 PF05768.9 gi|410670070|ref|YP_006922441.1| - 0.00067 19.8 0.0 0.00069 19.8 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_8 PF13905.1 gi|410670070|ref|YP_006922441.1| - 0.0075 16.3 0.9 0.29 11.2 0.0 2.3 1 1 1 2 2 2 1 Thioredoxin-like TraF PF13728.1 gi|410670070|ref|YP_006922441.1| - 0.013 15.0 0.0 0.016 14.6 0.0 1.1 1 0 0 1 1 1 0 F plasmid transfer operon protein tRNA_lig_CPD PF08302.6 gi|410670070|ref|YP_006922441.1| - 0.022 13.9 0.0 0.026 13.7 0.0 1.0 1 0 0 1 1 1 0 Fungal tRNA ligase phosphodiesterase domain Thioredoxin_4 PF13462.1 gi|410670070|ref|YP_006922441.1| - 0.042 13.8 0.7 0.47 10.4 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin DSBA PF01323.15 gi|410670070|ref|YP_006922441.1| - 0.07 12.6 0.1 0.23 10.9 0.0 1.7 1 1 1 2 2 2 0 DSBA-like thioredoxin domain AIM24 PF01987.12 gi|410670071|ref|YP_006922442.1| - 4.3e-55 186.5 0.7 4.9e-55 186.3 0.5 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 ApbE PF02424.10 gi|410670072|ref|YP_006922443.1| - 3.9e-19 68.9 8.2 4.5e-19 68.7 5.7 1.3 1 1 0 1 1 1 1 ApbE family Fer4 PF00037.22 gi|410670073|ref|YP_006922444.1| - 8.8e-17 59.9 9.5 3.4e-09 35.9 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|410670073|ref|YP_006922444.1| - 6.9e-12 44.6 11.6 1.2e-05 24.9 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|410670073|ref|YP_006922444.1| - 7e-12 45.4 21.7 9.7e-10 38.5 7.8 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410670073|ref|YP_006922444.1| - 1.4e-11 43.5 13.9 6.1e-06 25.8 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|410670073|ref|YP_006922444.1| - 1.4e-10 40.7 11.9 2.3e-10 40.1 8.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410670073|ref|YP_006922444.1| - 1.7e-10 40.5 6.0 6.8e-05 22.6 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410670073|ref|YP_006922444.1| - 2.5e-10 40.5 11.0 4.3e-10 39.8 7.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410670073|ref|YP_006922444.1| - 1.2e-08 35.5 8.7 0.00057 20.5 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|410670073|ref|YP_006922444.1| - 4.4e-08 33.0 40.2 6e-05 22.9 11.3 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|410670073|ref|YP_006922444.1| - 6.1e-08 32.9 5.1 0.0019 18.6 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|410670073|ref|YP_006922444.1| - 1.4e-06 28.5 14.1 0.001 19.3 2.3 2.5 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|410670073|ref|YP_006922444.1| - 3.3e-06 26.9 15.9 0.0066 16.6 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|410670073|ref|YP_006922444.1| - 2.6e-05 24.6 13.6 0.017 15.6 2.1 2.5 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|410670073|ref|YP_006922444.1| - 3e-05 24.2 14.2 0.017 15.4 2.7 2.2 1 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|410670073|ref|YP_006922444.1| - 3e-05 24.2 19.4 0.013 15.9 4.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|410670073|ref|YP_006922444.1| - 0.0024 17.7 7.4 0.0066 16.3 5.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain NIL PF09383.5 gi|410670073|ref|YP_006922444.1| - 0.0037 16.8 0.1 0.0049 16.4 0.0 1.2 1 0 0 1 1 1 1 NIL domain Fer4_19 PF06902.6 gi|410670073|ref|YP_006922444.1| - 0.0042 16.8 3.6 0.0062 16.3 2.5 1.2 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster c-SKI_SMAD_bind PF08782.5 gi|410670073|ref|YP_006922444.1| - 0.12 12.5 9.0 0.54 10.4 1.0 2.5 1 1 1 2 2 2 0 c-SKI Smad4 binding domain DUF678 PF05077.7 gi|410670073|ref|YP_006922444.1| - 1.6 8.7 8.5 6.1 6.9 5.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF678) DUF39 PF01837.11 gi|410670074|ref|YP_006922445.1| - 4.4e-149 495.7 0.2 5.7e-149 495.3 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF39 CBS PF00571.23 gi|410670074|ref|YP_006922445.1| - 2.1e-27 94.6 2.6 2e-14 53.1 0.1 2.5 2 0 0 2 2 2 2 CBS domain GARS_A PF01071.14 gi|410670074|ref|YP_006922445.1| - 0.037 13.5 1.6 3.3 7.2 0.0 2.4 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HSP20 PF00011.16 gi|410670075|ref|YP_006922446.1| - 9.2e-10 38.3 0.2 3.3e-08 33.2 0.1 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|410670075|ref|YP_006922446.1| - 0.0002 21.8 0.0 0.0003 21.2 0.0 1.2 1 0 0 1 1 1 1 CS domain DUF3867 PF12983.2 gi|410670075|ref|YP_006922446.1| - 0.039 13.9 0.1 0.19 11.7 0.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3867) PIH1 PF08190.7 gi|410670075|ref|YP_006922446.1| - 0.046 13.1 0.0 0.06 12.7 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 MFS_1 PF07690.11 gi|410670076|ref|YP_006922447.1| - 1.5e-50 171.8 39.7 1.5e-50 171.8 27.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|410670076|ref|YP_006922447.1| - 1.7e-06 26.7 36.0 4e-06 25.5 5.4 2.9 2 1 1 3 3 3 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|410670076|ref|YP_006922447.1| - 1.8e-05 23.5 25.5 3.4e-05 22.6 17.7 1.5 1 1 0 1 1 1 1 Sugar (and other) transporter ATG22 PF11700.3 gi|410670076|ref|YP_006922447.1| - 0.24 9.8 35.8 0.36 9.2 5.8 2.6 2 1 0 2 2 2 0 Vacuole effluxer Atg22 like DUF2892 PF11127.3 gi|410670077|ref|YP_006922448.1| - 1.5e-17 63.1 0.2 1.8e-17 62.8 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) HATPase_c PF02518.21 gi|410670078|ref|YP_006922449.1| - 6.7e-30 103.0 0.0 1.4e-29 102.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|410670078|ref|YP_006922449.1| - 7.6e-17 61.0 0.0 2.1e-13 50.0 0.0 3.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|410670078|ref|YP_006922449.1| - 3.6e-09 37.2 0.0 7.8e-09 36.1 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|410670078|ref|YP_006922449.1| - 3e-07 30.5 0.0 5.6e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c_3 PF13589.1 gi|410670078|ref|YP_006922449.1| - 0.0037 16.9 0.0 0.0073 15.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|410670078|ref|YP_006922449.1| - 0.047 13.4 0.0 0.08 12.7 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF3369 PF11849.3 gi|410670078|ref|YP_006922449.1| - 0.067 13.1 2.4 0.81 9.6 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF3369) 2-Hacid_dh_C PF02826.14 gi|410670079|ref|YP_006922450.1| - 1.8e-62 209.6 0.1 3.4e-62 208.7 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|410670079|ref|YP_006922450.1| - 2.1e-41 140.4 3.2 9.1e-41 138.4 0.6 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.7 gi|410670079|ref|YP_006922450.1| - 3.6e-05 23.1 0.2 0.00011 21.6 0.0 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|410670079|ref|YP_006922450.1| - 0.00037 20.3 2.2 0.00058 19.7 0.1 2.3 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ACT PF01842.20 gi|410670079|ref|YP_006922450.1| - 0.00091 18.6 0.0 0.0035 16.8 0.0 2.0 1 0 0 1 1 1 1 ACT domain UDPG_MGDP_dh_C PF03720.10 gi|410670079|ref|YP_006922450.1| - 0.037 14.1 0.1 0.15 12.2 0.0 2.0 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Cystatin PF00031.16 gi|410670079|ref|YP_006922450.1| - 0.056 13.5 0.3 0.13 12.4 0.2 1.5 1 0 0 1 1 1 0 Cystatin domain F420_oxidored PF03807.12 gi|410670079|ref|YP_006922450.1| - 0.067 13.6 0.1 0.067 13.6 0.0 2.7 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent DUF2240 PF09999.4 gi|410670081|ref|YP_006922452.1| - 2.8e-46 156.5 0.0 3.2e-46 156.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) Ribosomal_L18e PF00828.14 gi|410670082|ref|YP_006922453.1| - 1.8e-14 54.2 0.0 2.7e-14 53.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L13 PF00572.13 gi|410670083|ref|YP_006922454.1| - 4.2e-24 85.0 0.0 5.2e-24 84.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|410670084|ref|YP_006922455.1| - 8.9e-35 119.5 0.5 1e-34 119.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.12 gi|410670085|ref|YP_006922456.1| - 1e-13 51.0 0.1 1.1e-13 51.0 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit F-box PF00646.28 gi|410670085|ref|YP_006922456.1| - 0.3 10.7 1.2 0.97 9.1 0.6 1.7 1 1 1 2 2 2 0 F-box domain RNA_pol_Rpb6 PF01192.17 gi|410670086|ref|YP_006922457.1| - 2.3e-14 52.8 0.0 2.7e-14 52.6 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 Ribosomal_S2 PF00318.15 gi|410670087|ref|YP_006922458.1| - 1.6e-41 141.8 0.7 3e-20 72.3 0.6 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Avirulence PF03377.8 gi|410670087|ref|YP_006922458.1| - 0.034 12.8 0.0 0.13 10.9 0.0 1.3 1 1 0 1 1 1 0 Xanthomonas avirulence protein, Avr/PthA Peripla_BP_4 PF13407.1 gi|410670087|ref|YP_006922458.1| - 0.073 12.4 2.4 0.11 11.8 1.1 1.6 1 1 1 2 2 2 0 Periplasmic binding protein domain Memo PF01875.12 gi|410670088|ref|YP_006922459.1| - 4.1e-73 245.6 0.0 4.6e-73 245.4 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|410670088|ref|YP_006922459.1| - 0.0079 15.2 0.0 0.011 14.7 0.0 1.3 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Peptidase_C58 PF03543.9 gi|410670088|ref|YP_006922459.1| - 0.17 11.3 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 Yersinia/Haemophilus virulence surface antigen GHMP_kinases_N PF00288.21 gi|410670089|ref|YP_006922460.1| - 5.7e-19 67.9 0.1 5.7e-19 67.9 0.1 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|410670089|ref|YP_006922460.1| - 8.6e-16 57.9 0.9 8.6e-16 57.9 0.6 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|410670089|ref|YP_006922460.1| - 0.02 14.1 0.0 0.041 13.1 0.0 1.5 1 0 0 1 1 1 0 Galactokinase galactose-binding signature AA_kinase PF00696.23 gi|410670090|ref|YP_006922461.1| - 2e-38 132.2 2.5 2.4e-38 132.0 1.7 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.13 gi|410670091|ref|YP_006922462.1| - 5.5e-35 120.8 0.0 4.7e-22 78.3 0.0 2.1 1 1 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|410670091|ref|YP_006922462.1| - 1.4e-05 24.1 0.5 0.00083 18.3 0.1 2.7 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|410670091|ref|YP_006922462.1| - 0.00011 21.5 0.7 0.00032 19.9 0.2 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|410670091|ref|YP_006922462.1| - 0.0018 17.2 6.3 0.0025 16.8 0.4 2.6 2 1 0 3 3 3 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.12 gi|410670091|ref|YP_006922462.1| - 0.046 12.6 2.1 0.12 11.2 1.5 1.8 1 1 0 1 1 1 0 Conserved region in glutamate synthase Lactamase_B PF00753.22 gi|410670092|ref|YP_006922463.1| - 2e-19 70.0 0.4 7.7e-19 68.1 0.2 2.0 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|410670092|ref|YP_006922463.1| - 4.1e-10 39.5 1.1 3.4e-09 36.5 0.3 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|410670092|ref|YP_006922463.1| - 4.2e-09 36.0 0.2 1.2e-08 34.6 0.2 1.7 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase polyprenyl_synt PF00348.12 gi|410670093|ref|YP_006922464.1| - 7.3e-69 231.4 0.0 8.7e-69 231.2 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase PEP-utilizers_C PF02896.13 gi|410670094|ref|YP_006922465.1| - 2.3e-101 338.5 0.0 4.9e-101 337.4 0.0 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.14 gi|410670094|ref|YP_006922465.1| - 2.6e-62 210.7 0.0 1e-61 208.8 0.0 1.9 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|410670094|ref|YP_006922465.1| - 1.7e-23 81.9 1.4 5e-23 80.4 1.0 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Gar1 PF04410.9 gi|410670095|ref|YP_006922466.1| - 2.1e-10 40.2 0.0 2.2e-10 40.2 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.14 gi|410670096|ref|YP_006922467.1| - 1.5e-47 159.3 1.6 2.6e-24 84.7 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|410670096|ref|YP_006922467.1| - 2.1e-18 65.3 1.4 4.3e-18 64.3 0.6 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|410670096|ref|YP_006922467.1| - 2.8e-05 23.3 0.5 0.017 14.4 0.1 3.1 2 0 0 2 2 2 1 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.6 gi|410670096|ref|YP_006922467.1| - 0.0017 17.9 0.4 0.0047 16.5 0.3 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|410670096|ref|YP_006922467.1| - 0.0039 16.3 0.2 0.0039 16.3 0.1 1.9 2 0 0 2 2 1 1 zinc-ribbon domain HTH_AsnC-type PF13404.1 gi|410670096|ref|YP_006922467.1| - 0.024 14.1 0.7 0.084 12.4 0.1 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Ribosomal_S27e PF01667.12 gi|410670096|ref|YP_006922467.1| - 0.028 13.9 0.5 0.028 13.9 0.3 1.8 2 0 0 2 2 2 0 Ribosomal protein S27 A2L_zn_ribbon PF08792.5 gi|410670096|ref|YP_006922467.1| - 0.03 13.7 1.4 0.18 11.2 0.9 2.2 1 1 1 2 2 2 0 A2L zinc ribbon domain Lar_restr_allev PF14354.1 gi|410670096|ref|YP_006922467.1| - 0.049 13.9 2.1 0.47 10.8 0.8 2.8 2 1 0 2 2 2 0 Restriction alleviation protein Lar Elf1 PF05129.8 gi|410670096|ref|YP_006922467.1| - 0.065 12.9 2.1 0.11 12.2 0.4 2.1 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like DNA_RNApol_7kD PF03604.8 gi|410670096|ref|YP_006922467.1| - 0.078 12.4 0.1 0.078 12.4 0.1 2.9 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit RPA_interact_C PF14768.1 gi|410670096|ref|YP_006922467.1| - 0.11 12.9 0.2 9.1 6.7 0.0 2.4 2 0 0 2 2 2 0 Replication protein A interacting C-terminal DZR PF12773.2 gi|410670096|ref|YP_006922467.1| - 0.12 12.2 1.7 0.37 10.6 0.3 2.3 2 0 0 2 2 2 0 Double zinc ribbon HypA PF01155.14 gi|410670096|ref|YP_006922467.1| - 0.18 11.5 3.0 0.45 10.2 0.4 2.5 2 1 1 3 3 3 0 Hydrogenase expression/synthesis hypA family zf-CHY PF05495.7 gi|410670096|ref|YP_006922467.1| - 0.27 11.4 1.6 0.71 10.0 0.5 2.1 2 0 0 2 2 2 0 CHY zinc finger HTH_31 PF13560.1 gi|410670096|ref|YP_006922467.1| - 0.74 10.0 5.5 3.3 7.9 0.0 3.6 3 1 1 4 4 4 0 Helix-turn-helix domain Zn_Tnp_IS1595 PF12760.2 gi|410670096|ref|YP_006922467.1| - 1.2 9.0 4.0 0.29 10.9 0.2 2.0 2 0 0 2 2 1 0 Transposase zinc-ribbon domain zf-Mss51 PF13824.1 gi|410670096|ref|YP_006922467.1| - 2.5 8.0 4.4 5.3 6.9 1.0 2.9 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.5 gi|410670096|ref|YP_006922467.1| - 4.4 7.3 8.4 0.55 10.2 0.5 2.9 2 1 1 3 3 3 0 Zinc ribbon domain LysE PF01810.13 gi|410670097|ref|YP_006922468.1| - 2.7e-24 85.5 14.1 3.1e-24 85.3 9.8 1.0 1 0 0 1 1 1 1 LysE type translocator DUF2909 PF11137.3 gi|410670097|ref|YP_006922468.1| - 0.061 13.0 0.8 0.31 10.8 0.6 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2909) IspA PF04279.10 gi|410670097|ref|YP_006922468.1| - 0.6 10.0 7.3 0.047 13.6 0.9 2.0 2 0 0 2 2 2 0 Intracellular septation protein A DUF4131 PF13567.1 gi|410670097|ref|YP_006922468.1| - 6.3 6.1 11.0 4 6.7 5.8 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Met_10 PF02475.11 gi|410670098|ref|YP_006922469.1| - 9.3e-61 204.9 0.2 1.3e-60 204.4 0.2 1.1 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|410670098|ref|YP_006922469.1| - 2.2e-11 43.4 0.0 4.1e-11 42.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|410670098|ref|YP_006922469.1| - 6.9e-11 42.7 0.0 1.6e-10 41.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|410670098|ref|YP_006922469.1| - 1.1e-10 41.3 0.0 2.2e-10 40.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|410670098|ref|YP_006922469.1| - 1e-07 31.9 0.0 2e-07 31.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain TRM PF02005.11 gi|410670098|ref|YP_006922469.1| - 1.6e-06 27.2 0.1 2e-06 27.0 0.1 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.5 gi|410670098|ref|YP_006922469.1| - 2.9e-05 23.6 0.0 6.7e-05 22.4 0.0 1.6 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|410670098|ref|YP_006922469.1| - 3.4e-05 23.3 0.1 8.6e-05 22.0 0.0 1.6 1 1 1 2 2 2 1 Conserved hypothetical protein 95 PrmA PF06325.8 gi|410670098|ref|YP_006922469.1| - 0.00014 21.1 0.2 0.00023 20.3 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.12 gi|410670098|ref|YP_006922469.1| - 0.0004 19.4 0.0 0.00072 18.6 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase RrnaAD PF00398.15 gi|410670098|ref|YP_006922469.1| - 0.00044 19.3 0.0 0.00072 18.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_16 PF10294.4 gi|410670098|ref|YP_006922469.1| - 0.00069 19.1 0.0 0.001 18.5 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase N6_Mtase PF02384.11 gi|410670098|ref|YP_006922469.1| - 0.0024 17.0 0.0 0.0042 16.2 0.0 1.4 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_12 PF08242.7 gi|410670098|ref|YP_006922469.1| - 0.0034 17.8 0.0 0.0067 16.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.21 gi|410670098|ref|YP_006922469.1| - 0.0068 15.9 0.0 0.022 14.2 0.0 1.9 2 1 0 2 2 2 1 Zinc-binding dehydrogenase Methyltransf_25 PF13649.1 gi|410670098|ref|YP_006922469.1| - 0.0089 16.3 0.0 0.018 15.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|410670098|ref|YP_006922469.1| - 0.01 15.3 0.0 0.023 14.2 0.0 1.6 1 1 1 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_24 PF13578.1 gi|410670098|ref|YP_006922469.1| - 0.014 16.2 0.1 0.044 14.6 0.0 1.9 2 1 0 2 2 1 0 Methyltransferase domain FmrO PF07091.6 gi|410670098|ref|YP_006922469.1| - 0.015 14.2 0.0 0.027 13.4 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) FtsJ PF01728.14 gi|410670098|ref|YP_006922469.1| - 0.024 14.6 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase PRMT5 PF05185.11 gi|410670098|ref|YP_006922469.1| - 0.063 12.1 0.0 0.088 11.7 0.0 1.1 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase tRNA_U5-meth_tr PF05958.6 gi|410670098|ref|YP_006922469.1| - 0.1 11.2 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Response_reg PF00072.19 gi|410670099|ref|YP_006922470.1| - 2.3e-22 79.1 0.0 2.5e-22 78.9 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Methyltransf_31 PF13847.1 gi|410670099|ref|YP_006922470.1| - 0.025 14.1 0.1 0.028 14.0 0.1 1.1 1 0 0 1 1 1 0 Methyltransferase domain AAA_assoc PF14363.1 gi|410670099|ref|YP_006922470.1| - 0.048 13.7 0.0 0.075 13.0 0.0 1.4 1 0 0 1 1 1 0 Domain associated at C-terminal with AAA DUF4391 PF14335.1 gi|410670100|ref|YP_006922471.1| - 0.0018 17.7 1.0 0.0038 16.6 0.7 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4391) CheF-arch PF04283.7 gi|410670100|ref|YP_006922471.1| - 0.0093 15.2 0.4 0.02 14.1 0.3 1.5 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea HD PF01966.17 gi|410670102|ref|YP_006922473.1| - 2.9e-08 33.7 0.1 5.2e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 HD domain TM_helix PF05552.7 gi|410670103|ref|YP_006922474.1| - 3.5e-20 71.4 47.4 2.9e-10 39.6 4.6 4.7 4 1 1 5 5 5 3 Conserved TM helix Aminotran_1_2 PF00155.16 gi|410670105|ref|YP_006922476.1| - 6e-59 199.8 0.0 6.8e-59 199.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|410670105|ref|YP_006922476.1| - 2.6e-09 36.6 0.0 3.8e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|410670105|ref|YP_006922476.1| - 2.5e-08 32.6 0.0 3.9e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|410670105|ref|YP_006922476.1| - 5.2e-05 22.1 0.0 7.8e-05 21.5 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|410670105|ref|YP_006922476.1| - 0.001 18.3 0.0 0.002 17.3 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Fe_dep_repress PF01325.14 gi|410670106|ref|YP_006922477.1| - 9.3e-17 60.7 1.2 1.4e-16 60.1 0.8 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|410670106|ref|YP_006922477.1| - 1.4e-14 53.5 0.4 2.7e-14 52.6 0.2 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain FeoC PF09012.5 gi|410670106|ref|YP_006922477.1| - 3e-05 23.6 0.0 4.6e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator LexA_DNA_bind PF01726.11 gi|410670106|ref|YP_006922477.1| - 0.00029 20.3 0.0 0.00052 19.5 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain MarR_2 PF12802.2 gi|410670106|ref|YP_006922477.1| - 0.00048 19.7 0.0 0.00086 18.9 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|410670106|ref|YP_006922477.1| - 0.0021 17.7 0.2 0.0036 16.9 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|410670106|ref|YP_006922477.1| - 0.0064 15.8 0.0 0.015 14.6 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|410670106|ref|YP_006922477.1| - 0.0074 16.5 0.0 0.011 16.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|410670106|ref|YP_006922477.1| - 0.016 14.9 0.0 0.037 13.7 0.0 1.6 2 0 0 2 2 2 0 MarR family HTH_IclR PF09339.5 gi|410670106|ref|YP_006922477.1| - 0.025 14.1 0.0 0.049 13.2 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|410670106|ref|YP_006922477.1| - 0.039 13.6 0.0 0.06 13.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|410670106|ref|YP_006922477.1| - 0.04 14.0 0.0 0.058 13.5 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator B-block_TFIIIC PF04182.7 gi|410670106|ref|YP_006922477.1| - 0.15 11.9 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC FeoA PF04023.9 gi|410670107|ref|YP_006922478.1| - 5.3e-18 64.7 0.2 5.8e-18 64.6 0.1 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.13 gi|410670108|ref|YP_006922479.1| - 9.8e-67 223.1 0.2 1.5e-66 222.4 0.1 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|410670108|ref|YP_006922479.1| - 8e-51 170.5 14.6 3.5e-33 113.7 2.6 2.7 2 0 0 2 2 2 2 Nucleoside recognition FeoB_C PF07664.7 gi|410670108|ref|YP_006922479.1| - 5.4e-22 76.9 2.2 5.4e-22 76.9 1.5 3.1 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.18 gi|410670108|ref|YP_006922479.1| - 4.7e-16 58.7 0.1 1e-15 57.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|410670108|ref|YP_006922479.1| - 0.00089 18.5 0.0 0.0015 17.8 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit ArgK PF03308.11 gi|410670108|ref|YP_006922479.1| - 0.0053 15.5 0.1 0.33 9.6 0.0 2.2 2 0 0 2 2 2 1 ArgK protein AIG1 PF04548.11 gi|410670108|ref|YP_006922479.1| - 0.0079 15.3 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 AIG1 family GTP_EFTU PF00009.22 gi|410670108|ref|YP_006922479.1| - 0.015 14.7 0.9 1.2 8.4 0.6 2.5 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|410670108|ref|YP_006922479.1| - 0.093 12.5 0.1 16 5.2 0.0 2.4 2 0 0 2 2 2 0 Dynamin family TctB PF07331.6 gi|410670109|ref|YP_006922480.1| - 3.2e-05 23.6 5.1 0.00011 21.9 0.8 2.1 2 0 0 2 2 2 1 Tripartite tricarboxylate transporter TctB family DUF4383 PF14325.1 gi|410670109|ref|YP_006922480.1| - 0.011 15.7 5.8 0.017 15.1 4.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4383) FeoB_C PF07664.7 gi|410670109|ref|YP_006922480.1| - 0.82 9.1 0.0 0.82 9.1 0.0 2.3 3 0 0 3 3 3 0 Ferrous iron transport protein B C terminus DUF3185 PF11381.3 gi|410670109|ref|YP_006922480.1| - 2.5 7.9 12.9 1.5 8.6 0.5 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3185) DUF1700 PF08006.6 gi|410670109|ref|YP_006922480.1| - 5.1 6.3 10.1 2.4 7.4 2.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1700) FeoC PF09012.5 gi|410670110|ref|YP_006922481.1| - 8.8e-11 41.3 0.1 1.2e-10 40.9 0.1 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_24 PF13412.1 gi|410670110|ref|YP_006922481.1| - 1.1e-05 24.6 0.1 1.7e-05 24.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|410670110|ref|YP_006922481.1| - 0.00015 21.4 0.2 0.55 10.0 0.0 2.1 2 0 0 2 2 2 2 Winged helix-turn-helix Fe_dep_repress PF01325.14 gi|410670110|ref|YP_006922481.1| - 0.00023 21.0 0.0 0.0004 20.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|410670110|ref|YP_006922481.1| - 0.00024 20.7 0.0 0.00031 20.3 0.0 1.2 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|410670110|ref|YP_006922481.1| - 0.00035 19.9 0.0 0.00047 19.5 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.1 gi|410670110|ref|YP_006922481.1| - 0.00038 20.3 0.0 0.00059 19.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|410670110|ref|YP_006922481.1| - 0.0021 17.3 0.0 0.0032 16.7 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.14 gi|410670110|ref|YP_006922481.1| - 0.0027 17.3 0.0 0.0048 16.5 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|410670110|ref|YP_006922481.1| - 0.0032 17.0 0.0 0.0043 16.5 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|410670110|ref|YP_006922481.1| - 0.01 15.5 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Mga PF08280.6 gi|410670110|ref|YP_006922481.1| - 0.012 15.4 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.17 gi|410670110|ref|YP_006922481.1| - 0.013 15.1 0.0 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 MarR family HxlR PF01638.12 gi|410670110|ref|YP_006922481.1| - 0.014 15.0 0.0 0.24 11.0 0.0 2.0 2 0 0 2 2 2 0 HxlR-like helix-turn-helix Rrf2 PF02082.15 gi|410670110|ref|YP_006922481.1| - 0.02 14.9 0.0 0.029 14.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.1 gi|410670110|ref|YP_006922481.1| - 0.027 14.8 0.0 0.17 12.2 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_1 PF00126.22 gi|410670110|ref|YP_006922481.1| - 0.039 13.6 0.0 0.17 11.6 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family CENP-B_N PF04218.8 gi|410670110|ref|YP_006922481.1| - 0.054 12.9 0.0 0.093 12.1 0.0 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_11 PF08279.7 gi|410670110|ref|YP_006922481.1| - 0.06 13.0 0.0 0.082 12.5 0.0 1.2 1 0 0 1 1 1 0 HTH domain LexA_DNA_bind PF01726.11 gi|410670110|ref|YP_006922481.1| - 0.087 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_30 PF13556.1 gi|410670110|ref|YP_006922481.1| - 0.13 11.9 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF4445 PF14574.1 gi|410670111|ref|YP_006922482.1| - 3.1e-100 335.2 5.6 4.3e-100 334.8 3.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4_7 PF12838.2 gi|410670111|ref|YP_006922482.1| - 1.7e-06 28.3 10.4 3.6e-06 27.2 7.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|410670111|ref|YP_006922482.1| - 7.2e-06 25.8 3.4 1.7e-05 24.6 2.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410670111|ref|YP_006922482.1| - 1e-05 26.1 9.4 0.00046 20.8 0.9 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|410670111|ref|YP_006922482.1| - 2.6e-05 24.3 9.5 6e-05 23.2 6.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410670111|ref|YP_006922482.1| - 0.00011 21.8 14.9 0.041 13.7 3.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|410670111|ref|YP_006922482.1| - 0.00024 20.5 13.6 0.0013 18.2 2.0 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|410670111|ref|YP_006922482.1| - 0.0012 18.6 13.9 0.016 14.9 10.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410670111|ref|YP_006922482.1| - 0.0027 17.5 9.7 0.0056 16.4 6.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|410670111|ref|YP_006922482.1| - 0.0029 18.0 7.0 0.088 13.2 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410670111|ref|YP_006922482.1| - 0.0084 16.3 15.3 0.26 11.7 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|410670111|ref|YP_006922482.1| - 0.051 13.9 4.3 0.55 10.6 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|410670111|ref|YP_006922482.1| - 0.25 12.0 17.1 1.3 9.7 2.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|410670111|ref|YP_006922482.1| - 0.51 10.3 14.8 0.29 11.1 1.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|410670111|ref|YP_006922482.1| - 1.7 8.7 13.2 2.9 7.9 2.8 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain cobW PF02492.14 gi|410670112|ref|YP_006922483.1| - 1.4e-35 122.3 1.2 2e-35 121.8 0.8 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.17 gi|410670112|ref|YP_006922483.1| - 0.0036 16.7 0.8 0.01 15.2 0.1 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain ArgK PF03308.11 gi|410670112|ref|YP_006922483.1| - 0.0057 15.4 0.4 0.015 14.1 0.3 1.7 1 0 0 1 1 1 1 ArgK protein MobB PF03205.9 gi|410670112|ref|YP_006922483.1| - 0.0077 15.9 0.3 0.024 14.3 0.1 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|410670112|ref|YP_006922483.1| - 0.017 14.2 0.0 0.055 12.5 0.1 1.8 2 0 0 2 2 2 0 Zeta toxin TK PF00265.13 gi|410670112|ref|YP_006922483.1| - 0.032 13.7 0.0 0.084 12.4 0.0 1.7 1 0 0 1 1 1 0 Thymidine kinase CbiA PF01656.18 gi|410670112|ref|YP_006922483.1| - 0.035 13.5 0.4 0.035 13.5 0.3 2.1 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2922 PF11148.3 gi|410670112|ref|YP_006922483.1| - 0.039 13.6 2.6 0.33 10.6 0.1 3.4 2 1 0 3 3 3 0 Protein of unknown function (DUF2922) AAA_19 PF13245.1 gi|410670112|ref|YP_006922483.1| - 0.16 11.7 0.1 0.52 10.0 0.1 1.8 2 0 0 2 2 2 0 Part of AAA domain AAA_18 PF13238.1 gi|410670112|ref|YP_006922483.1| - 2.5 8.4 5.3 0.75 10.1 0.2 2.5 3 1 0 3 3 3 0 AAA domain B12-binding PF02310.14 gi|410670114|ref|YP_006922485.1| - 6e-18 64.8 0.4 1.1e-17 64.0 0.3 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|410670114|ref|YP_006922485.1| - 2.4e-17 62.7 0.1 4.6e-17 61.8 0.1 1.5 1 0 0 1 1 1 1 B12 binding domain DNAPolymera_Pol PF11590.3 gi|410670114|ref|YP_006922485.1| - 0.04 13.5 0.1 0.09 12.4 0.0 1.6 1 0 0 1 1 1 0 DNA polymerase catalytic subunit Pol MtaB PF12176.3 gi|410670115|ref|YP_006922486.1| - 6.3e-224 743.5 3.6 7.1e-224 743.4 2.5 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit Hydantoinase_A PF01968.13 gi|410670116|ref|YP_006922487.1| - 8.3e-76 254.8 0.4 1.8e-74 250.5 0.0 2.5 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|410670116|ref|YP_006922487.1| - 7.3e-41 139.5 4.8 7e-39 133.1 0.2 2.6 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|410670116|ref|YP_006922487.1| - 4.8e-08 31.7 3.5 0.0025 16.2 0.1 2.2 2 0 0 2 2 2 2 MutL protein Sda PF08970.5 gi|410670116|ref|YP_006922487.1| - 0.022 14.2 0.0 0.047 13.1 0.0 1.5 1 0 0 1 1 1 0 Sporulation inhibitor A Actin PF00022.14 gi|410670116|ref|YP_006922487.1| - 0.049 12.0 0.1 0.083 11.3 0.1 1.2 1 0 0 1 1 1 0 Actin BcrAD_BadFG PF01869.15 gi|410670116|ref|YP_006922487.1| - 0.17 11.1 0.9 0.7 9.1 0.5 2.1 1 1 1 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family URO-D PF01208.12 gi|410670117|ref|YP_006922488.1| - 2e-88 296.6 0.8 2.2e-88 296.4 0.5 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DEAD_assoc PF08494.6 gi|410670118|ref|YP_006922489.1| - 4.5e-43 147.1 0.0 8e-43 146.3 0.0 1.4 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|410670118|ref|YP_006922489.1| - 2e-31 108.7 0.0 4.8e-31 107.5 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|410670118|ref|YP_006922489.1| - 8.1e-19 67.2 0.1 2.5e-17 62.4 0.0 2.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|410670118|ref|YP_006922489.1| - 4.3e-05 23.4 0.0 7.4e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|410670118|ref|YP_006922489.1| - 0.00027 19.8 0.0 0.0013 17.5 0.0 1.9 2 0 0 2 2 2 1 SNF2 family N-terminal domain AAA_25 PF13481.1 gi|410670118|ref|YP_006922489.1| - 0.018 14.4 0.0 0.062 12.7 0.0 2.0 1 1 0 1 1 1 0 AAA domain T4SS-DNA_transf PF02534.9 gi|410670118|ref|YP_006922489.1| - 0.092 11.3 0.0 0.17 10.4 0.0 1.3 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer Metallophos PF00149.23 gi|410670119|ref|YP_006922490.1| - 4.1e-07 29.6 0.1 4.9e-07 29.3 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DNA_pol_E_B PF04042.11 gi|410670119|ref|YP_006922490.1| - 0.0085 15.3 0.0 0.036 13.3 0.0 1.9 1 1 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B DUF1422 PF07226.6 gi|410670120|ref|YP_006922491.1| - 0.0049 16.5 1.6 0.0074 16.0 1.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1422) Ndc1_Nup PF09531.5 gi|410670120|ref|YP_006922491.1| - 0.05 12.0 0.9 0.055 11.8 0.6 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup PspB PF06667.7 gi|410670120|ref|YP_006922491.1| - 0.071 13.0 0.7 0.2 11.6 0.5 1.8 1 1 0 1 1 1 0 Phage shock protein B IncA PF04156.9 gi|410670120|ref|YP_006922491.1| - 0.11 12.1 0.4 1.2 8.6 0.0 2.0 2 0 0 2 2 2 0 IncA protein EOS1 PF12326.3 gi|410670120|ref|YP_006922491.1| - 0.12 12.0 1.1 0.17 11.5 0.6 1.4 1 1 0 1 1 1 0 N-glycosylation protein DUF2205 PF10224.4 gi|410670120|ref|YP_006922491.1| - 0.13 11.8 0.8 0.23 11.0 0.6 1.5 1 1 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) DivIC PF04977.10 gi|410670120|ref|YP_006922491.1| - 0.27 10.7 2.5 4.2 6.9 1.2 2.6 2 1 0 2 2 2 0 Septum formation initiator DS PF01916.12 gi|410670121|ref|YP_006922492.1| - 1.2e-85 287.2 0.1 1.4e-85 287.0 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase OMPdecase PF00215.19 gi|410670122|ref|YP_006922493.1| - 1.6e-42 145.4 0.3 2.1e-42 145.0 0.2 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|410670122|ref|YP_006922493.1| - 2.8e-06 26.7 0.6 0.0024 17.1 0.2 2.3 2 0 0 2 2 2 2 PcrB family Myosin_tail_1 PF01576.14 gi|410670123|ref|YP_006922494.1| - 1.9e-05 22.6 21.5 1.9e-05 22.6 14.9 3.2 2 1 0 2 2 2 1 Myosin tail NPV_P10 PF05531.7 gi|410670123|ref|YP_006922494.1| - 0.45 10.7 15.3 0.84 9.9 0.2 6.3 4 2 3 7 7 7 0 Nucleopolyhedrovirus P10 protein Tox-REase-5 PF15648.1 gi|410670123|ref|YP_006922494.1| - 1.7 8.9 6.0 0.77 10.0 0.2 3.2 3 0 0 3 3 3 0 Restriction endonuclease fold toxin 5 AAA_13 PF13166.1 gi|410670123|ref|YP_006922494.1| - 4 5.7 64.8 0.21 10.0 5.8 3.5 2 1 1 3 3 3 0 AAA domain MreB_Mbl PF06723.8 gi|410670124|ref|YP_006922495.1| - 5.8e-18 64.5 0.0 1.1e-17 63.6 0.0 1.3 1 1 0 1 1 1 1 MreB/Mbl protein Actin PF00022.14 gi|410670124|ref|YP_006922495.1| - 2.8e-07 29.3 0.0 0.0036 15.7 0.0 2.1 1 1 1 2 2 2 2 Actin FtsA PF14450.1 gi|410670124|ref|YP_006922495.1| - 0.00011 21.9 1.4 0.045 13.5 0.0 2.6 2 1 0 2 2 2 2 Cell division protein FtsA BcrAD_BadFG PF01869.15 gi|410670124|ref|YP_006922495.1| - 0.041 13.1 0.0 0.59 9.3 0.0 2.3 2 1 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Ppx-GppA PF02541.11 gi|410670125|ref|YP_006922496.1| - 1.9e-36 125.7 0.0 4.3e-36 124.5 0.0 1.5 1 1 0 1 1 1 1 Ppx/GppA phosphatase family EutA PF06277.6 gi|410670125|ref|YP_006922496.1| - 9.3e-07 27.8 0.1 1.3e-06 27.3 0.1 1.1 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutA FtsA PF14450.1 gi|410670125|ref|YP_006922496.1| - 0.016 14.9 0.3 0.96 9.2 0.0 3.0 3 0 0 3 3 3 0 Cell division protein FtsA PP_kinase_C PF13090.1 gi|410670126|ref|YP_006922497.1| - 7.4e-145 481.9 4.5 1e-144 481.5 3.1 1.2 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|410670126|ref|YP_006922497.1| - 7.3e-50 169.3 0.5 1.4e-49 168.4 0.3 1.5 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|410670126|ref|YP_006922497.1| - 9.2e-34 115.8 0.0 2.6e-33 114.3 0.0 1.8 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|410670126|ref|YP_006922497.1| - 3.4e-15 55.9 1.1 1.7e-06 27.8 0.2 3.4 3 0 0 3 3 3 2 PLD-like domain CheR PF01739.13 gi|410670128|ref|YP_006922499.1| - 5.8e-41 139.9 0.0 6.4e-41 139.7 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheW PF01584.14 gi|410670129|ref|YP_006922500.1| - 1e-39 135.1 5.0 1.3e-39 134.8 3.5 1.1 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.16 gi|410670130|ref|YP_006922501.1| - 1.6e-56 191.2 62.6 4.9e-54 183.0 26.8 4.2 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|410670130|ref|YP_006922501.1| - 0.00038 20.5 8.4 11 6.3 0.1 7.8 8 0 0 8 8 8 1 HAMP domain DUF3158 PF11358.3 gi|410670130|ref|YP_006922501.1| - 0.036 13.5 2.6 0.11 12.0 0.1 3.1 4 0 0 4 4 4 0 Protein of unknown function (DUF3158) DUF948 PF06103.6 gi|410670130|ref|YP_006922501.1| - 0.037 13.8 23.3 0.28 11.0 0.9 5.8 4 2 1 5 5 5 0 Bacterial protein of unknown function (DUF948) IFT46_B_C PF12317.3 gi|410670130|ref|YP_006922501.1| - 4.8 6.4 7.6 17 4.6 1.2 2.9 2 0 0 2 2 2 0 Intraflagellar transport complex B protein 46 C terminal Tweety PF04906.8 gi|410670130|ref|YP_006922501.1| - 6.9 4.9 12.7 0.65 8.3 2.2 2.5 2 0 0 2 2 2 0 Tweety PYC_OADA PF02436.13 gi|410670132|ref|YP_006922503.1| - 6.7e-67 224.7 0.6 1.1e-66 223.9 0.4 1.4 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|410670132|ref|YP_006922503.1| - 2.3e-41 142.0 0.0 3.2e-41 141.5 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.17 gi|410670132|ref|YP_006922503.1| - 4e-18 64.8 2.0 4e-18 64.8 1.4 2.5 3 0 0 3 3 3 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|410670132|ref|YP_006922503.1| - 1.4e-05 24.6 0.0 0.0028 17.2 0.0 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.1 gi|410670132|ref|YP_006922503.1| - 0.022 14.4 1.2 0.088 12.5 0.4 2.3 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain HlyD PF00529.15 gi|410670132|ref|YP_006922503.1| - 0.03 13.6 0.1 0.17 11.1 0.0 2.1 1 1 1 2 2 2 0 HlyD family secretion protein DUF561 PF04481.7 gi|410670132|ref|YP_006922503.1| - 0.053 12.4 0.0 1.4 7.7 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF561) GCV_H PF01597.14 gi|410670132|ref|YP_006922503.1| - 0.087 12.5 3.0 0.69 9.6 0.2 2.5 1 1 1 2 2 2 0 Glycine cleavage H-protein CPSase_L_D2 PF02786.12 gi|410670133|ref|YP_006922504.1| - 8.6e-81 270.2 1.0 1.6e-80 269.3 0.7 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|410670133|ref|YP_006922504.1| - 1.8e-43 147.1 0.5 4.1e-43 145.9 0.1 1.9 2 0 0 2 2 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|410670133|ref|YP_006922504.1| - 1.1e-41 141.0 0.0 2.6e-41 139.9 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATP-grasp_4 PF13535.1 gi|410670133|ref|YP_006922504.1| - 3.2e-18 66.1 0.0 6.4e-18 65.1 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|410670133|ref|YP_006922504.1| - 9.9e-15 54.0 0.0 3.4e-14 52.3 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|410670133|ref|YP_006922504.1| - 1.2e-12 47.6 0.1 4.1e-12 45.9 0.1 1.9 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|410670133|ref|YP_006922504.1| - 8.3e-11 41.7 1.0 2.3e-10 40.2 0.1 2.2 3 1 0 3 3 3 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|410670133|ref|YP_006922504.1| - 4.4e-07 29.8 0.1 7.8e-07 29.0 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|410670133|ref|YP_006922504.1| - 5.7e-06 25.7 0.2 1.2e-05 24.7 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|410670133|ref|YP_006922504.1| - 0.0027 17.3 2.2 0.0059 16.1 0.4 2.3 2 1 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|410670133|ref|YP_006922504.1| - 0.007 15.5 0.1 0.016 14.4 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain TMP-TENI PF02581.12 gi|410670133|ref|YP_006922504.1| - 0.0074 15.4 0.1 0.024 13.7 0.0 1.9 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI BPL_LplA_LipB PF03099.14 gi|410670134|ref|YP_006922505.1| - 2e-24 86.0 0.0 3.4e-24 85.2 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|410670134|ref|YP_006922505.1| - 4e-13 48.7 0.3 4e-13 48.7 0.2 2.1 3 0 0 3 3 3 1 HTH domain BPL_C PF02237.12 gi|410670134|ref|YP_006922505.1| - 9.2e-11 41.2 0.0 2.3e-10 39.9 0.0 1.7 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.1 gi|410670134|ref|YP_006922505.1| - 3.8e-06 26.1 0.2 9.2e-06 24.9 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|410670134|ref|YP_006922505.1| - 0.018 15.0 0.1 0.06 13.3 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|410670134|ref|YP_006922505.1| - 0.04 13.5 0.1 0.12 12.0 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain PAP_fibrillin PF04755.7 gi|410670134|ref|YP_006922505.1| - 0.075 12.7 0.0 0.33 10.6 0.0 1.9 2 0 0 2 2 2 0 PAP_fibrillin S-layer PF07752.6 gi|410670135|ref|YP_006922506.1| - 1e-07 31.4 0.1 1.3e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 S-layer protein DUF3450 PF11932.3 gi|410670136|ref|YP_006922507.1| - 3.8e-06 26.3 6.1 0.0027 17.0 0.4 2.8 1 1 2 3 3 3 2 Protein of unknown function (DUF3450) MscS_porin PF12795.2 gi|410670136|ref|YP_006922507.1| - 0.00023 20.5 10.0 0.2 10.9 0.2 3.1 2 1 1 3 3 3 2 Mechanosensitive ion channel porin domain HAUS5 PF14817.1 gi|410670136|ref|YP_006922507.1| - 0.0012 17.5 5.1 0.0012 17.5 3.5 1.7 2 1 0 2 2 2 1 HAUS augmin-like complex subunit 5 Atg14 PF10186.4 gi|410670136|ref|YP_006922507.1| - 0.0029 16.5 6.1 0.0029 16.5 4.2 2.9 2 1 1 3 3 3 1 UV radiation resistance protein and autophagy-related subunit 14 TPR_MLP1_2 PF07926.7 gi|410670136|ref|YP_006922507.1| - 0.006 16.3 19.2 0.22 11.2 0.8 3.5 2 2 0 2 2 2 1 TPR/MLP1/MLP2-like protein IncA PF04156.9 gi|410670136|ref|YP_006922507.1| - 0.0061 16.1 8.0 0.0061 16.1 5.6 2.3 2 0 0 2 2 2 1 IncA protein V_ATPase_I PF01496.14 gi|410670136|ref|YP_006922507.1| - 0.0079 14.1 11.1 0.0097 13.8 7.7 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family CENP-F_leu_zip PF10473.4 gi|410670136|ref|YP_006922507.1| - 0.012 15.5 26.5 0.014 15.2 7.8 3.3 3 0 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Ribosomal_L29 PF00831.18 gi|410670136|ref|YP_006922507.1| - 0.012 15.2 3.7 0.075 12.7 0.9 3.3 2 0 0 2 2 2 0 Ribosomal L29 protein HrpB7 PF09486.5 gi|410670136|ref|YP_006922507.1| - 0.017 15.0 1.2 0.017 15.0 0.8 3.4 1 1 2 3 3 3 0 Bacterial type III secretion protein (HrpB7) Laminin_I PF06008.9 gi|410670136|ref|YP_006922507.1| - 0.019 14.3 13.6 0.034 13.4 3.2 2.3 2 0 0 2 2 2 0 Laminin Domain I COG2 PF06148.6 gi|410670136|ref|YP_006922507.1| - 0.04 13.7 12.5 0.25 11.1 1.9 3.5 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Laminin_II PF06009.7 gi|410670136|ref|YP_006922507.1| - 0.058 13.1 12.7 0.34 10.6 4.4 3.0 2 1 1 3 3 3 0 Laminin Domain II Reo_sigmaC PF04582.7 gi|410670136|ref|YP_006922507.1| - 0.098 11.8 5.1 0.29 10.2 2.0 2.1 2 0 0 2 2 2 0 Reovirus sigma C capsid protein DUF2968 PF11180.3 gi|410670136|ref|YP_006922507.1| - 0.15 11.4 6.5 1.9 7.8 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) Sec8_exocyst PF04048.9 gi|410670136|ref|YP_006922507.1| - 0.16 11.6 14.0 0.48 10.0 1.2 3.4 3 1 1 4 4 4 0 Sec8 exocyst complex component specific domain APG6 PF04111.7 gi|410670136|ref|YP_006922507.1| - 0.24 10.4 22.3 0.18 10.8 5.8 2.5 2 1 0 2 2 2 0 Autophagy protein Apg6 YlqD PF11068.3 gi|410670136|ref|YP_006922507.1| - 0.3 11.1 13.4 0.2 11.6 2.4 3.1 3 1 0 3 3 2 0 YlqD protein bZIP_1 PF00170.16 gi|410670136|ref|YP_006922507.1| - 0.56 10.2 13.8 22 5.0 0.1 4.9 4 1 1 5 5 5 0 bZIP transcription factor DUF4407 PF14362.1 gi|410670136|ref|YP_006922507.1| - 0.7 8.7 9.3 0.096 11.6 2.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Seryl_tRNA_N PF02403.17 gi|410670136|ref|YP_006922507.1| - 1 9.3 24.9 2.2 8.3 4.5 4.8 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain TBPIP PF07106.8 gi|410670136|ref|YP_006922507.1| - 1.1 8.7 20.7 2.4 7.6 6.1 3.2 2 1 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF2408 PF10303.4 gi|410670136|ref|YP_006922507.1| - 1.9 8.5 15.0 0.1 12.7 4.5 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF2408) NPV_P10 PF05531.7 gi|410670136|ref|YP_006922507.1| - 2 8.7 5.7 40 4.5 0.5 3.8 2 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF972 PF06156.8 gi|410670136|ref|YP_006922507.1| - 2.2 8.6 19.8 25 5.2 3.7 3.9 2 2 0 2 2 2 0 Protein of unknown function (DUF972) ADIP PF11559.3 gi|410670136|ref|YP_006922507.1| - 2.6 7.9 20.9 6.7 6.5 8.4 2.5 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DUF1515 PF07439.6 gi|410670136|ref|YP_006922507.1| - 3.1 7.6 7.3 2.8 7.7 2.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1515) DUF4071 PF13281.1 gi|410670136|ref|YP_006922507.1| - 3.3 6.4 10.9 0.18 10.5 3.0 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4071) DUF4140 PF13600.1 gi|410670136|ref|YP_006922507.1| - 3.4 8.1 13.3 13 6.3 0.6 4.1 2 2 2 4 4 4 0 N-terminal domain of unknown function (DUF4140) Syntaxin PF00804.20 gi|410670136|ref|YP_006922507.1| - 3.9 7.6 16.9 0.24 11.6 5.8 2.7 2 1 0 2 2 2 0 Syntaxin DUF2935 PF11155.3 gi|410670136|ref|YP_006922507.1| - 4 7.5 8.9 57 3.8 4.4 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) OmpH PF03938.9 gi|410670136|ref|YP_006922507.1| - 4.3 7.2 14.0 0.36 10.7 2.6 2.8 2 2 0 2 2 2 0 Outer membrane protein (OmpH-like) Nup54 PF13874.1 gi|410670136|ref|YP_006922507.1| - 4.7 6.8 12.7 0.093 12.4 1.7 3.0 2 2 1 3 3 3 0 Nucleoporin complex subunit 54 Vps5 PF09325.5 gi|410670137|ref|YP_006922508.1| - 0.0004 19.6 10.3 0.032 13.4 1.6 2.9 1 1 2 3 3 3 2 Vps5 C terminal like NPV_P10 PF05531.7 gi|410670137|ref|YP_006922508.1| - 0.019 15.2 0.2 8.3 6.7 0.0 3.2 3 1 0 3 3 3 0 Nucleopolyhedrovirus P10 protein Mnd1 PF03962.10 gi|410670137|ref|YP_006922508.1| - 0.039 13.6 4.9 0.038 13.6 1.8 1.8 2 0 0 2 2 2 0 Mnd1 family Ax_dynein_light PF10211.4 gi|410670137|ref|YP_006922508.1| - 0.087 12.6 7.5 0.023 14.5 1.7 2.0 2 0 0 2 2 2 0 Axonemal dynein light chain Cep57_MT_bd PF06657.8 gi|410670137|ref|YP_006922508.1| - 1.5 8.7 7.3 2.5 8.1 0.1 2.9 3 0 0 3 3 3 0 Centrosome microtubule-binding domain of Cep57 TMF_DNA_bd PF12329.3 gi|410670137|ref|YP_006922508.1| - 2.1 8.2 7.8 4.6 7.1 0.6 2.8 3 0 0 3 3 3 0 TATA element modulatory factor 1 DNA binding APG6 PF04111.7 gi|410670137|ref|YP_006922508.1| - 7.6 5.4 9.4 2.7 6.9 2.7 2.0 1 1 0 2 2 2 0 Autophagy protein Apg6 DUF424 PF04242.8 gi|410670138|ref|YP_006922509.1| - 1.9e-26 91.9 0.4 2.3e-26 91.6 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) MCM PF00493.18 gi|410670139|ref|YP_006922510.1| - 2.9e-132 440.4 0.2 4e-132 440.0 0.2 1.2 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|410670139|ref|YP_006922510.1| - 8.5e-17 61.7 1.3 9.6e-16 58.3 0.1 3.0 3 0 0 3 3 3 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|410670139|ref|YP_006922510.1| - 4.2e-07 29.3 0.1 8.5e-05 21.8 0.0 2.3 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|410670139|ref|YP_006922510.1| - 5.9e-06 26.0 0.0 3e-05 23.7 0.0 2.3 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|410670139|ref|YP_006922510.1| - 0.0053 16.3 0.2 0.026 14.1 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.24 gi|410670139|ref|YP_006922510.1| - 0.019 15.1 0.0 0.11 12.7 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF4072 PF13284.1 gi|410670139|ref|YP_006922510.1| - 0.021 14.9 0.8 0.021 14.9 0.6 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4072) Sigma54_activat PF00158.21 gi|410670139|ref|YP_006922510.1| - 0.11 11.9 0.1 0.72 9.2 0.1 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain SpoU_methylase PF00588.14 gi|410670140|ref|YP_006922511.1| - 2.9e-31 108.2 0.0 3.8e-31 107.8 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family OTCace PF00185.19 gi|410670140|ref|YP_006922511.1| - 0.017 15.0 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Nitrate_red_gam PF02665.9 gi|410670141|ref|YP_006922512.1| - 0.00033 20.0 18.9 0.00058 19.2 3.0 2.8 3 1 0 3 3 3 2 Nitrate reductase gamma subunit CCG PF02754.11 gi|410670142|ref|YP_006922513.1| - 6.4e-36 122.2 7.8 6.4e-19 67.7 0.0 3.0 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|410670142|ref|YP_006922513.1| - 1e-09 38.2 3.6 1e-09 38.2 2.5 3.2 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410670142|ref|YP_006922513.1| - 2.5e-07 30.9 4.9 2.5e-07 30.9 3.4 2.8 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410670142|ref|YP_006922513.1| - 3.6e-07 29.8 9.1 3.6e-07 29.8 6.3 2.9 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410670142|ref|YP_006922513.1| - 7.3e-07 29.4 8.4 7.3e-07 29.4 5.8 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|410670142|ref|YP_006922513.1| - 5.8e-06 26.6 8.5 0.018 15.4 0.5 3.9 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410670142|ref|YP_006922513.1| - 9.6e-06 25.7 15.7 0.0037 17.4 0.2 4.0 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410670142|ref|YP_006922513.1| - 0.00084 19.1 9.7 0.23 11.3 0.4 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|410670142|ref|YP_006922513.1| - 0.0086 16.6 4.1 3.5 8.2 0.2 3.3 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|410670142|ref|YP_006922513.1| - 0.013 16.2 10.7 0.013 16.2 7.4 2.8 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|410670142|ref|YP_006922513.1| - 0.018 14.9 20.1 0.038 13.9 1.9 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4 PF00037.22 gi|410670142|ref|YP_006922513.1| - 0.44 10.2 23.3 0.033 13.8 1.9 3.1 4 0 0 4 4 3 0 4Fe-4S binding domain DUF4001 PF13165.1 gi|410670142|ref|YP_006922513.1| - 1.1 8.9 7.8 0.52 10.0 0.5 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4001) DUF116 PF01976.12 gi|410670143|ref|YP_006922514.1| - 1.1e-43 148.4 6.5 1.3e-43 148.2 4.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 UbiA PF01040.13 gi|410670143|ref|YP_006922514.1| - 0.84 8.7 5.4 1.2 8.3 3.7 1.1 1 0 0 1 1 1 0 UbiA prenyltransferase family DUF116 PF01976.12 gi|410670144|ref|YP_006922515.1| - 3.1e-38 130.7 0.1 3.9e-38 130.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF116 CcoS PF03597.10 gi|410670144|ref|YP_006922515.1| - 0.18 11.2 0.7 0.37 10.2 0.5 1.5 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type FAD_binding_3 PF01494.14 gi|410670145|ref|YP_006922516.1| - 3.2e-10 39.5 0.4 2.2e-05 23.6 0.0 2.4 2 1 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|410670145|ref|YP_006922516.1| - 1e-08 35.3 0.0 2.2e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|410670145|ref|YP_006922516.1| - 1.3e-08 33.9 0.1 0.00057 18.6 0.0 2.7 1 1 1 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.2 gi|410670145|ref|YP_006922516.1| - 7.3e-08 31.9 0.0 1.1e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|410670145|ref|YP_006922516.1| - 9.7e-07 27.9 0.1 1.8e-06 27.1 0.1 1.5 1 1 0 1 1 1 1 Glucose inhibited division protein A DAO PF01266.19 gi|410670145|ref|YP_006922516.1| - 3.3e-06 26.2 0.1 0.04 12.8 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|410670145|ref|YP_006922516.1| - 1.6e-05 24.0 0.0 0.013 14.4 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.9 gi|410670145|ref|YP_006922516.1| - 1.7e-05 23.5 0.3 0.0035 15.8 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|410670145|ref|YP_006922516.1| - 0.00021 20.3 0.2 0.0024 16.7 0.0 2.4 3 0 0 3 3 3 1 FAD binding domain Thi4 PF01946.12 gi|410670145|ref|YP_006922516.1| - 0.00028 20.0 0.0 0.00061 18.9 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|410670145|ref|YP_006922516.1| - 0.00033 20.7 0.0 0.00052 20.1 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase PhoPQ_related PF10142.4 gi|410670145|ref|YP_006922516.1| - 0.0055 15.2 0.0 0.0071 14.8 0.0 1.1 1 0 0 1 1 1 1 PhoPQ-activated pathogenicity-related protein NAD_binding_8 PF13450.1 gi|410670145|ref|YP_006922516.1| - 0.03 14.3 0.1 0.096 12.7 0.1 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|410670145|ref|YP_006922516.1| - 0.036 14.4 0.8 3.7 8.0 0.0 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF1980 PF09323.5 gi|410670146|ref|YP_006922517.1| - 0.022 14.4 2.3 0.025 14.3 1.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) Adipogenin PF15202.1 gi|410670146|ref|YP_006922517.1| - 0.037 13.8 0.3 0.06 13.2 0.0 1.6 1 1 1 2 2 2 0 Adipogenin DUF4131 PF13567.1 gi|410670146|ref|YP_006922517.1| - 0.044 13.1 0.2 0.051 12.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF805 PF05656.9 gi|410670146|ref|YP_006922517.1| - 0.054 13.3 1.2 0.077 12.8 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF805) DUF3923 PF13061.1 gi|410670146|ref|YP_006922517.1| - 0.43 10.4 5.1 0.49 10.2 3.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3923) P12 PF12669.2 gi|410670146|ref|YP_006922517.1| - 0.47 10.6 0.0 0.47 10.6 0.0 2.0 2 0 0 2 2 2 0 Virus attachment protein p12 family PufQ PF05398.6 gi|410670146|ref|YP_006922517.1| - 0.51 10.4 2.4 0.31 11.1 0.2 1.7 1 1 1 2 2 2 0 PufQ cytochrome subunit DUF832 PF05734.6 gi|410670147|ref|YP_006922518.1| - 0.05 12.8 0.0 0.057 12.6 0.0 1.0 1 0 0 1 1 1 0 Herpesvirus protein of unknown function (DUF832) UPF0016 PF01169.14 gi|410670148|ref|YP_006922519.1| - 1.9e-44 149.6 18.2 2.5e-23 81.9 5.3 2.0 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 TauE PF01925.14 gi|410670148|ref|YP_006922519.1| - 7.9e-06 25.4 10.6 0.011 15.1 2.6 2.2 2 1 0 2 2 2 2 Sulfite exporter TauE/SafE TerC PF03741.11 gi|410670148|ref|YP_006922519.1| - 0.0015 18.0 10.6 0.0071 15.8 7.3 1.8 1 1 0 1 1 1 1 Integral membrane protein TerC family SANTA PF09133.5 gi|410670148|ref|YP_006922519.1| - 0.0079 16.1 0.4 0.42 10.6 0.1 2.2 2 0 0 2 2 2 1 SANTA (SANT Associated) HupE_UreJ PF04955.7 gi|410670148|ref|YP_006922519.1| - 0.015 14.5 5.9 0.086 12.1 1.3 2.3 2 0 0 2 2 2 0 HupE / UreJ protein Acyl_transf_3 PF01757.17 gi|410670148|ref|YP_006922519.1| - 0.057 12.2 6.8 0.072 11.9 4.7 1.2 1 0 0 1 1 1 0 Acyltransferase family DUF4306 PF14154.1 gi|410670148|ref|YP_006922519.1| - 0.059 13.3 0.4 0.13 12.2 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4306) DUF2393 PF09624.5 gi|410670148|ref|YP_006922519.1| - 0.13 11.7 3.6 3.8 7.0 0.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) PIG-F PF06699.6 gi|410670148|ref|YP_006922519.1| - 0.55 10.1 4.1 1.7 8.5 0.0 2.1 1 1 1 2 2 2 0 GPI biosynthesis protein family Pig-F DsbD_2 PF13386.1 gi|410670148|ref|YP_006922519.1| - 0.67 9.6 11.6 1.2 8.8 1.3 2.2 1 1 1 2 2 2 0 Cytochrome C biogenesis protein transmembrane region EmrE PF13536.1 gi|410670148|ref|YP_006922519.1| - 0.86 9.8 7.8 0.22 11.7 2.9 1.8 1 1 1 2 2 2 0 Multidrug resistance efflux transporter Oxidored_q3 PF00499.15 gi|410670148|ref|YP_006922519.1| - 0.91 9.2 15.8 1.3 8.8 6.9 2.3 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 MFS_1 PF07690.11 gi|410670148|ref|YP_006922519.1| - 1 7.9 15.9 11 4.5 11.1 2.0 1 1 0 1 1 1 0 Major Facilitator Superfamily DUF202 PF02656.10 gi|410670148|ref|YP_006922519.1| - 2.5 8.3 7.4 4.7 7.5 1.5 3.2 2 2 0 2 2 2 0 Domain of unknown function (DUF202) Herpes_US9 PF06072.6 gi|410670148|ref|YP_006922519.1| - 2.6 7.9 8.2 9.2 6.1 0.1 2.8 3 0 0 3 3 3 0 Alphaherpesvirus tegument protein US9 PhaG_MnhG_YufB PF03334.9 gi|410670148|ref|YP_006922519.1| - 5.5 7.1 12.2 3.2 7.8 2.8 3.4 3 1 1 4 4 4 0 Na+/H+ antiporter subunit DUF3784 PF12650.2 gi|410670148|ref|YP_006922519.1| - 6.8 6.7 14.6 4.4 7.3 0.1 3.5 2 2 1 3 3 3 0 Domain of unknown function (DUF3784) PPDK_N PF01326.14 gi|410670149|ref|YP_006922520.1| - 1.5e-58 198.3 0.0 2.4e-58 197.7 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DUF2094 PF09867.4 gi|410670149|ref|YP_006922520.1| - 0.068 13.0 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2094) F420_oxidored PF03807.12 gi|410670150|ref|YP_006922521.1| - 8.6e-20 70.9 1.3 1.6e-19 70.1 0.9 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|410670150|ref|YP_006922521.1| - 0.00019 20.9 0.3 0.00063 19.2 0.2 1.7 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Semialdhyde_dh PF01118.19 gi|410670150|ref|YP_006922521.1| - 0.0004 20.6 0.1 0.00077 19.7 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|410670150|ref|YP_006922521.1| - 0.0011 18.6 0.1 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|410670150|ref|YP_006922521.1| - 0.0049 16.8 0.2 0.0076 16.2 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|410670150|ref|YP_006922521.1| - 0.021 14.7 0.3 0.034 14.0 0.2 1.3 1 0 0 1 1 1 0 short chain dehydrogenase DUF2927 PF11150.3 gi|410670150|ref|YP_006922521.1| - 0.16 11.6 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2927) ELFV_dehydrog PF00208.16 gi|410670151|ref|YP_006922522.1| - 8.9e-73 244.8 2.5 9.9e-73 244.6 1.3 1.4 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|410670151|ref|YP_006922522.1| - 8.6e-50 167.6 0.0 1.5e-49 166.9 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|410670151|ref|YP_006922522.1| - 0.001 18.2 0.2 0.0018 17.4 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Malic_M PF03949.10 gi|410670151|ref|YP_006922522.1| - 0.0017 17.9 0.5 0.0025 17.4 0.3 1.2 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain zf-NADH-PPase PF09297.6 gi|410670152|ref|YP_006922523.1| - 0.0096 15.4 1.4 0.011 15.2 0.0 1.7 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|410670152|ref|YP_006922523.1| - 0.052 12.8 4.2 0.23 10.7 2.9 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding DUF1289 PF06945.8 gi|410670152|ref|YP_006922523.1| - 0.11 12.0 2.8 0.16 11.4 2.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1289) DZR PF12773.2 gi|410670152|ref|YP_006922523.1| - 0.11 12.2 0.6 0.16 11.8 0.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|410670152|ref|YP_006922523.1| - 0.74 9.1 4.2 1.7 7.9 2.9 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Dus PF01207.12 gi|410670153|ref|YP_006922524.1| - 2.3e-11 43.1 0.7 3.5e-11 42.5 0.5 1.3 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) IMPDH PF00478.20 gi|410670153|ref|YP_006922524.1| - 2.7e-07 29.8 1.0 3.9e-07 29.2 0.7 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.16 gi|410670153|ref|YP_006922524.1| - 4.1e-07 29.4 0.2 1.3e-06 27.8 0.1 1.7 1 1 1 2 2 2 1 Histidine biosynthesis protein Ribul_P_3_epim PF00834.14 gi|410670153|ref|YP_006922524.1| - 0.038 13.0 0.4 0.18 10.8 0.0 2.2 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family CitG PF01874.11 gi|410670154|ref|YP_006922525.1| - 3.6e-80 269.1 0.0 4.2e-80 268.8 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.7 gi|410670155|ref|YP_006922526.1| - 4.7e-54 182.6 0.0 5.3e-54 182.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) PHP_C PF13263.1 gi|410670156|ref|YP_006922527.1| - 1e-18 66.5 0.0 2.9e-18 65.1 0.0 1.7 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|410670156|ref|YP_006922527.1| - 6.7e-10 39.0 0.0 7.9e-10 38.7 0.0 1.3 1 1 0 1 1 1 1 PHP domain MMR_HSR1 PF01926.18 gi|410670157|ref|YP_006922528.1| - 3.1e-21 75.4 0.0 6.8e-21 74.3 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|410670157|ref|YP_006922528.1| - 1.3e-13 50.8 0.1 2.6e-13 49.9 0.1 1.5 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.13 gi|410670157|ref|YP_006922528.1| - 5.1e-07 29.0 1.0 8.2e-07 28.4 0.2 1.8 2 1 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|410670157|ref|YP_006922528.1| - 7.6e-06 25.4 0.1 0.0027 17.1 0.0 2.3 1 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|410670157|ref|YP_006922528.1| - 0.00015 21.6 0.1 0.0009 19.1 0.0 2.0 1 1 1 2 2 2 1 Dynamin family Arf PF00025.16 gi|410670157|ref|YP_006922528.1| - 0.00087 18.5 1.7 0.0015 17.8 0.2 2.0 2 1 0 2 2 2 1 ADP-ribosylation factor family Septin PF00735.13 gi|410670157|ref|YP_006922528.1| - 0.0016 17.5 0.2 0.58 9.1 0.0 2.5 2 0 0 2 2 2 2 Septin Miro PF08477.8 gi|410670157|ref|YP_006922528.1| - 0.0039 17.6 0.0 0.0094 16.4 0.0 1.8 1 1 0 1 1 1 1 Miro-like protein GBP PF02263.14 gi|410670157|ref|YP_006922528.1| - 0.011 14.8 0.1 5 6.0 0.0 2.5 2 0 0 2 2 2 0 Guanylate-binding protein, N-terminal domain DUF258 PF03193.11 gi|410670157|ref|YP_006922528.1| - 0.017 14.3 0.0 0.031 13.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SRPRB PF09439.5 gi|410670157|ref|YP_006922528.1| - 0.022 13.9 0.1 0.04 13.1 0.1 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit MobB PF03205.9 gi|410670157|ref|YP_006922528.1| - 0.034 13.8 0.1 0.078 12.6 0.0 1.7 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AIG1 PF04548.11 gi|410670157|ref|YP_006922528.1| - 0.084 11.9 0.1 0.18 10.9 0.0 1.5 1 0 0 1 1 1 0 AIG1 family AAA_23 PF13476.1 gi|410670157|ref|YP_006922528.1| - 0.086 13.1 0.4 3.1 8.0 0.1 2.2 1 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|410670157|ref|YP_006922528.1| - 0.094 13.0 0.1 0.53 10.5 0.0 2.1 1 1 1 2 2 2 0 ABC transporter DUF2209 PF09974.4 gi|410670159|ref|YP_006922529.1| - 3.8e-23 81.9 0.0 4.1e-23 81.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) tRNA_int_endo PF01974.12 gi|410670160|ref|YP_006922531.1| - 1.1e-45 153.3 0.2 7.4e-22 76.9 0.1 2.3 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|410670160|ref|YP_006922531.1| - 1.7e-39 133.1 0.8 7.1e-19 67.1 0.0 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.5 gi|410670160|ref|YP_006922531.1| - 0.011 15.9 0.0 0.037 14.2 0.0 1.8 2 0 0 2 2 2 0 Sen15 protein CMD PF02627.15 gi|410670161|ref|YP_006922532.1| - 8.2e-12 44.8 0.3 9.6e-12 44.5 0.2 1.0 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family MscL PF01741.13 gi|410670162|ref|YP_006922533.1| - 8.6e-18 64.7 6.7 9.4e-18 64.5 4.7 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL SNARE_assoc PF09335.6 gi|410670162|ref|YP_006922533.1| - 0.0055 16.8 2.1 0.012 15.8 1.5 1.7 1 1 0 1 1 1 1 SNARE associated Golgi protein PEMT PF04191.8 gi|410670162|ref|YP_006922533.1| - 0.14 12.2 1.2 5.5 7.1 0.0 2.1 2 0 0 2 2 2 0 Phospholipid methyltransferase DUF1443 PF07280.6 gi|410670162|ref|YP_006922533.1| - 0.17 11.4 2.9 6.6 6.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1443) LRR19-TM PF15176.1 gi|410670162|ref|YP_006922533.1| - 0.87 9.3 3.2 0.36 10.5 0.5 1.6 2 0 0 2 2 2 0 Leucine-rich repeat family 19 TM domain TraL PF07178.6 gi|410670162|ref|YP_006922533.1| - 1.1 9.2 7.9 0.77 9.8 1.2 2.1 1 1 1 2 2 2 0 TraL protein GATase_3 PF07685.9 gi|410670163|ref|YP_006922534.1| - 2.2e-32 111.8 0.2 3.5e-32 111.1 0.2 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|410670163|ref|YP_006922534.1| - 1.3e-21 76.9 0.1 2e-21 76.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|410670163|ref|YP_006922534.1| - 2.7e-12 46.7 0.5 3.9e-10 39.6 0.3 2.4 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|410670164|ref|YP_006922535.1| - 2.9e-89 298.8 0.8 3.3e-89 298.7 0.5 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|410670164|ref|YP_006922535.1| - 8e-11 41.7 0.0 1.1e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|410670164|ref|YP_006922535.1| - 1.8e-07 30.4 0.3 9.2e-07 28.1 0.1 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|410670164|ref|YP_006922535.1| - 1.1e-05 25.4 0.0 2.8e-05 24.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|410670164|ref|YP_006922535.1| - 0.00013 20.8 0.1 0.00019 20.2 0.0 1.2 1 0 0 1 1 1 1 ArgK protein AAA_10 PF12846.2 gi|410670164|ref|YP_006922535.1| - 0.00042 19.8 0.0 0.00058 19.3 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain MipZ PF09140.6 gi|410670164|ref|YP_006922535.1| - 0.0013 17.8 0.3 0.014 14.4 0.0 2.3 3 0 0 3 3 3 1 ATPase MipZ SRP54 PF00448.17 gi|410670164|ref|YP_006922535.1| - 0.0035 16.8 0.1 0.0065 15.9 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|410670164|ref|YP_006922535.1| - 0.01 15.5 0.1 0.024 14.3 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|410670164|ref|YP_006922535.1| - 0.019 14.9 0.0 0.15 12.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|410670164|ref|YP_006922535.1| - 0.023 14.0 0.4 0.04 13.3 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|410670164|ref|YP_006922535.1| - 0.035 13.6 0.1 0.057 12.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|410670164|ref|YP_006922535.1| - 0.035 12.9 0.0 0.054 12.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.1 gi|410670164|ref|YP_006922535.1| - 0.04 13.4 0.0 0.099 12.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain CPSase_L_chain PF00289.17 gi|410670164|ref|YP_006922535.1| - 0.065 13.3 0.0 0.22 11.6 0.0 2.0 2 1 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP_bind_1 PF03029.12 gi|410670164|ref|YP_006922535.1| - 0.13 11.7 0.4 0.8 9.1 0.3 2.0 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein IstB_IS21 PF01695.12 gi|410670164|ref|YP_006922535.1| - 0.14 11.5 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|410670164|ref|YP_006922535.1| - 0.16 12.7 0.9 0.3 11.9 0.6 1.9 1 1 0 1 1 1 0 AAA domain Oxidored_nitro PF00148.14 gi|410670165|ref|YP_006922536.1| - 7.9e-17 60.9 0.0 1.2e-16 60.3 0.0 1.4 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Mur_ligase_M PF08245.7 gi|410670167|ref|YP_006922538.1| - 1.7e-10 41.2 0.0 2.8e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 Mur ligase middle domain HEM4 PF02602.10 gi|410670167|ref|YP_006922538.1| - 0.015 14.5 0.0 0.03 13.5 0.0 1.5 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD DUF2150 PF09920.4 gi|410670168|ref|YP_006922539.1| - 1e-66 224.1 5.6 1.2e-66 223.9 3.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) UPF0179 PF03684.8 gi|410670169|ref|YP_006922540.1| - 7.5e-48 161.7 0.3 8.3e-48 161.5 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) PADR1 PF08063.7 gi|410670169|ref|YP_006922540.1| - 0.0065 15.8 0.2 0.012 14.9 0.1 1.5 1 0 0 1 1 1 1 PADR1 (NUC008) domain DDE_Tnp_1_6 PF13751.1 gi|410670169|ref|YP_006922540.1| - 0.042 13.8 0.1 0.064 13.2 0.1 1.3 1 0 0 1 1 1 0 Transposase DDE domain Fe-ADH_2 PF13685.1 gi|410670170|ref|YP_006922541.1| - 8.2e-70 234.9 4.1 9.9e-70 234.6 2.8 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|410670170|ref|YP_006922541.1| - 6.3e-24 84.2 3.0 8e-24 83.9 2.0 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|410670170|ref|YP_006922541.1| - 4.2e-10 38.9 1.0 9.6e-10 37.8 0.7 1.5 1 1 0 1 1 1 1 3-dehydroquinate synthase DUF1792 PF08759.6 gi|410670170|ref|YP_006922541.1| - 0.023 14.3 0.1 0.036 13.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1792) DUF63 PF01889.12 gi|410670171|ref|YP_006922542.1| - 3.1e-103 345.6 17.9 3.5e-103 345.4 12.4 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 VKOR PF07884.9 gi|410670171|ref|YP_006922542.1| - 0.29 10.9 7.3 0.79 9.5 5.0 1.8 1 1 0 1 1 1 0 Vitamin K epoxide reductase family DUF95 PF01944.12 gi|410670172|ref|YP_006922543.1| - 1.1e-32 113.0 25.4 1.3e-32 112.7 17.6 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF95 Ninjurin PF04923.7 gi|410670172|ref|YP_006922543.1| - 0.31 10.7 0.1 0.31 10.7 0.0 2.4 3 0 0 3 3 3 0 Ninjurin DUF1297 PF06973.7 gi|410670173|ref|YP_006922544.1| - 3e-76 254.9 0.0 4.1e-76 254.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|410670173|ref|YP_006922544.1| - 6.1e-45 151.9 0.0 9.6e-45 151.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|410670173|ref|YP_006922544.1| - 0.0024 17.6 0.0 0.32 10.7 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp domain KaiC PF06745.8 gi|410670174|ref|YP_006922545.1| - 2.9e-39 134.5 0.0 3.6e-39 134.2 0.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|410670174|ref|YP_006922545.1| - 7.9e-08 31.0 0.0 9.8e-06 24.1 0.0 2.2 1 1 0 1 1 1 1 GvpD gas vesicle protein IstB_IS21 PF01695.12 gi|410670174|ref|YP_006922545.1| - 3.6e-06 26.5 0.1 1.6e-05 24.4 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|410670174|ref|YP_006922545.1| - 9.7e-06 25.7 0.1 3.7e-05 23.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|410670174|ref|YP_006922545.1| - 3.1e-05 23.4 0.4 0.00012 21.5 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|410670174|ref|YP_006922545.1| - 0.00026 20.6 0.0 0.00052 19.7 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain RecA PF00154.16 gi|410670174|ref|YP_006922545.1| - 0.00029 20.0 0.0 0.00043 19.4 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein DUF2075 PF09848.4 gi|410670174|ref|YP_006922545.1| - 0.0016 17.4 0.0 0.0017 17.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|410670174|ref|YP_006922545.1| - 0.0017 18.3 0.1 0.0029 17.6 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF835 PF05763.7 gi|410670174|ref|YP_006922545.1| - 0.0029 17.1 0.1 0.0043 16.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Mg_chelatase PF01078.16 gi|410670174|ref|YP_006922545.1| - 0.0038 16.4 0.0 0.0053 15.9 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI UPF0113 PF03657.8 gi|410670174|ref|YP_006922545.1| - 0.0087 15.7 0.1 0.018 14.6 0.1 1.5 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0113) AAA_5 PF07728.9 gi|410670174|ref|YP_006922545.1| - 0.026 14.2 0.0 0.041 13.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|410670174|ref|YP_006922545.1| - 0.038 13.8 0.1 0.22 11.4 0.1 2.4 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|410670174|ref|YP_006922545.1| - 0.048 13.1 0.0 0.068 12.6 0.0 1.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain PAXNEB PF05625.6 gi|410670174|ref|YP_006922545.1| - 0.049 12.4 0.0 0.074 11.8 0.0 1.2 1 0 0 1 1 1 0 PAXNEB protein AAA PF00004.24 gi|410670174|ref|YP_006922545.1| - 0.052 13.7 0.5 0.15 12.2 0.3 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DEAD PF00270.24 gi|410670174|ref|YP_006922545.1| - 0.057 12.9 0.0 0.15 11.5 0.0 1.7 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_24 PF13479.1 gi|410670174|ref|YP_006922545.1| - 0.097 12.2 0.5 0.94 9.0 0.3 2.0 1 1 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|410670174|ref|YP_006922545.1| - 0.1 12.4 0.0 0.17 11.7 0.0 1.4 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit NACHT PF05729.7 gi|410670174|ref|YP_006922545.1| - 0.11 12.1 0.2 0.24 11.0 0.0 1.6 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.7 gi|410670174|ref|YP_006922545.1| - 0.13 11.3 0.0 0.22 10.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin GTP_EFTU PF00009.22 gi|410670175|ref|YP_006922546.1| - 6.4e-41 139.8 0.1 9.7e-41 139.2 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|410670175|ref|YP_006922546.1| - 2.6e-31 107.4 0.1 5.4e-31 106.4 0.1 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|410670175|ref|YP_006922546.1| - 8.8e-08 32.1 0.9 3.3e-07 30.3 0.5 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|410670175|ref|YP_006922546.1| - 0.019 14.4 0.8 5.4 6.4 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Nop10p PF04135.7 gi|410670175|ref|YP_006922546.1| - 0.029 14.0 1.3 0.053 13.2 0.9 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family FeoB_N PF02421.13 gi|410670175|ref|YP_006922546.1| - 0.041 13.1 0.5 1.9 7.7 0.3 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B MMR_HSR1 PF01926.18 gi|410670175|ref|YP_006922546.1| - 0.071 13.0 0.0 0.23 11.4 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase Fcf1 PF04900.7 gi|410670176|ref|YP_006922547.1| - 2.5e-10 40.3 0.0 3.3e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.1 gi|410670176|ref|YP_006922547.1| - 0.00043 20.4 0.1 0.00096 19.2 0.0 1.6 1 1 0 1 1 1 1 PIN domain PIN PF01850.16 gi|410670176|ref|YP_006922547.1| - 0.013 15.8 0.5 0.031 14.6 0.3 1.7 1 1 0 1 1 1 0 PIN domain UPF0278 PF08745.6 gi|410670176|ref|YP_006922547.1| - 0.021 14.0 0.1 0.046 12.9 0.1 1.7 1 1 1 2 2 2 0 UPF0278 family RNase_Zc3h12a PF11977.3 gi|410670176|ref|YP_006922547.1| - 0.04 13.7 0.0 0.051 13.4 0.0 1.3 1 1 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain XPG_I_2 PF12813.2 gi|410670176|ref|YP_006922547.1| - 0.084 12.3 0.0 0.096 12.1 0.0 1.2 1 0 0 1 1 1 0 XPG domain containing SHS2_Rpb7-N PF03876.12 gi|410670177|ref|YP_006922548.1| - 1.1e-20 73.4 0.0 2.1e-20 72.5 0.0 1.5 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|410670177|ref|YP_006922548.1| - 5.2e-10 39.2 1.7 6.2e-10 39.0 0.4 1.7 2 0 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|410670177|ref|YP_006922548.1| - 0.14 12.3 0.0 0.32 11.2 0.0 1.6 1 1 0 1 1 1 0 RNA polymerase III subunit Rpc25 Spt4 PF06093.8 gi|410670178|ref|YP_006922549.1| - 3.2e-15 55.7 0.5 3.7e-15 55.5 0.3 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger TF_Zn_Ribbon PF08271.7 gi|410670178|ref|YP_006922549.1| - 0.0015 17.7 0.2 0.02 14.2 0.0 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding zf-C3HC4_3 PF13920.1 gi|410670178|ref|YP_006922549.1| - 0.0035 16.9 1.7 0.0042 16.7 1.2 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|410670178|ref|YP_006922549.1| - 0.012 15.3 0.7 0.017 14.9 0.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|410670178|ref|YP_006922549.1| - 0.024 13.8 1.3 0.16 11.2 0.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-P11 PF03854.9 gi|410670178|ref|YP_006922549.1| - 0.046 13.2 2.0 0.076 12.5 1.4 1.3 1 0 0 1 1 1 0 P-11 zinc finger Prok-RING_4 PF14447.1 gi|410670178|ref|YP_006922549.1| - 0.075 12.5 0.3 0.099 12.2 0.2 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 RecR PF02132.10 gi|410670178|ref|YP_006922549.1| - 0.077 12.4 4.2 0.11 11.8 2.9 1.3 1 0 0 1 1 1 0 RecR protein zf-RING_4 PF14570.1 gi|410670178|ref|YP_006922549.1| - 0.086 12.4 1.4 0.12 11.9 1.0 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-C3HC4_2 PF13923.1 gi|410670178|ref|YP_006922549.1| - 0.25 11.3 3.3 0.36 10.8 2.3 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) OrfB_Zn_ribbon PF07282.6 gi|410670178|ref|YP_006922549.1| - 0.26 10.9 4.3 0.57 9.8 2.9 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-nanos PF05741.8 gi|410670178|ref|YP_006922549.1| - 0.38 10.7 2.1 1.4 8.9 1.4 1.9 1 1 0 1 1 1 0 Nanos RNA binding domain Prim_Zn_Ribbon PF08273.7 gi|410670178|ref|YP_006922549.1| - 0.53 10.4 4.8 2.5 8.2 0.3 2.2 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF359 PF04019.7 gi|410670179|ref|YP_006922550.1| - 1.2e-38 131.2 0.1 1.6e-38 130.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) NIR_SIR_ferr PF03460.12 gi|410670179|ref|YP_006922550.1| - 0.065 12.8 0.1 5.6 6.6 0.0 2.6 3 0 0 3 3 3 0 Nitrite/Sulfite reductase ferredoxin-like half domain Ribosomal_S24e PF01282.14 gi|410670180|ref|YP_006922551.1| - 8.2e-26 89.6 0.2 9.7e-26 89.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.14 gi|410670181|ref|YP_006922552.1| - 8.9e-20 70.2 2.5 9.6e-20 70.1 1.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a Ribosomal_L37e PF01907.14 gi|410670181|ref|YP_006922552.1| - 0.0016 18.2 1.2 0.0019 17.9 0.8 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|410670181|ref|YP_006922552.1| - 0.0027 17.4 1.0 0.0032 17.2 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon GCC2_GCC3 PF07699.8 gi|410670181|ref|YP_006922552.1| - 0.0038 16.7 1.5 0.005 16.3 1.0 1.3 1 1 0 1 1 1 1 GCC2 and GCC3 Zn_Tnp_IS1595 PF12760.2 gi|410670181|ref|YP_006922552.1| - 0.0071 16.1 1.2 0.0084 15.8 0.8 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|410670181|ref|YP_006922552.1| - 0.028 13.9 3.9 0.087 12.3 2.7 1.8 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DUF1451 PF07295.6 gi|410670181|ref|YP_006922552.1| - 0.047 13.4 0.6 0.045 13.5 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) HypA PF01155.14 gi|410670181|ref|YP_006922552.1| - 0.11 12.2 0.8 0.12 12.1 0.6 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family GFA PF04828.9 gi|410670181|ref|YP_006922552.1| - 0.11 12.4 1.1 0.22 11.5 0.2 1.7 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DUF2082 PF09855.4 gi|410670181|ref|YP_006922552.1| - 0.16 11.8 3.7 0.94 9.3 0.5 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-RING_3 PF14369.1 gi|410670181|ref|YP_006922552.1| - 0.26 11.3 0.4 0.26 11.3 0.3 1.8 1 1 1 2 2 2 0 zinc-finger Nudix_N_2 PF14803.1 gi|410670181|ref|YP_006922552.1| - 0.29 10.8 6.1 5 6.9 0.3 2.3 1 1 1 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|410670181|ref|YP_006922552.1| - 0.3 10.3 4.0 0.91 8.8 2.8 1.8 1 1 0 1 1 1 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|410670181|ref|YP_006922552.1| - 0.32 10.4 2.4 0.63 9.5 0.7 2.1 2 1 1 3 3 3 0 A2L zinc ribbon domain ADK_lid PF05191.9 gi|410670181|ref|YP_006922552.1| - 0.42 10.3 3.2 10 5.9 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid Opy2 PF09463.5 gi|410670181|ref|YP_006922552.1| - 0.58 10.2 3.5 4.3 7.4 2.4 1.9 1 1 0 1 1 1 0 Opy2 protein DUF1936 PF09151.5 gi|410670181|ref|YP_006922552.1| - 0.72 9.4 3.7 2.1 7.9 2.6 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF1936) DDE_Tnp_1 PF01609.16 gi|410670182|ref|YP_006922553.1| - 6.8e-09 35.5 2.7 7.2e-08 32.2 1.8 2.1 1 1 0 1 1 1 1 Transposase DDE domain DDE_5 PF13546.1 gi|410670182|ref|YP_006922553.1| - 0.039 12.7 0.0 0.072 11.9 0.0 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease DUF2162 PF09930.4 gi|410670183|ref|YP_006922554.1| - 4.2e-67 225.5 24.1 4.9e-67 225.3 16.7 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) SKG6 PF08693.5 gi|410670183|ref|YP_006922554.1| - 0.32 10.3 0.2 0.32 10.3 0.1 4.6 5 0 0 5 5 5 0 Transmembrane alpha-helix domain P12 PF12669.2 gi|410670183|ref|YP_006922554.1| - 3.8 7.7 7.9 24 5.2 0.0 3.8 3 0 0 3 3 3 0 Virus attachment protein p12 family DUF3792 PF12670.2 gi|410670183|ref|YP_006922554.1| - 7.1 6.5 30.3 0.37 10.6 10.8 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3792) MotA_ExbB PF01618.11 gi|410670184|ref|YP_006922555.1| - 2.7e-13 49.7 1.7 3.6e-13 49.3 1.2 1.2 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family VIT1 PF01988.14 gi|410670184|ref|YP_006922555.1| - 3.2e-05 23.5 0.4 5.1e-05 22.8 0.3 1.4 1 0 0 1 1 1 1 VIT family DUF2149 PF09919.4 gi|410670185|ref|YP_006922556.1| - 8.6e-35 118.7 0.4 1e-34 118.4 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) BcrAD_BadFG PF01869.15 gi|410670185|ref|YP_006922556.1| - 0.078 12.2 0.0 0.09 12.0 0.0 1.1 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family CobN-Mg_chel PF02514.11 gi|410670186|ref|YP_006922557.1| - 0 1207.5 7.4 0 1207.3 5.2 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CarboxypepD_reg PF13620.1 gi|410670186|ref|YP_006922557.1| - 0.0011 18.9 0.0 0.0046 16.9 0.0 2.1 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|410670186|ref|YP_006922557.1| - 0.011 15.4 0.0 0.039 13.7 0.0 2.0 1 0 0 1 1 1 0 Cna protein B-type domain TRM13 PF05206.9 gi|410670186|ref|YP_006922557.1| - 0.053 12.7 0.2 0.095 11.9 0.2 1.3 1 0 0 1 1 1 0 Methyltransferase TRM13 CobN-Mg_chel PF02514.11 gi|410670187|ref|YP_006922558.1| - 0 1285.3 8.2 0 1280.6 3.2 2.6 3 0 0 3 3 3 2 CobN/Magnesium Chelatase Peptidase_S8 PF00082.17 gi|410670188|ref|YP_006922559.1| - 1.1e-40 139.5 2.8 1.1e-40 139.5 1.9 3.4 2 1 0 2 2 2 1 Subtilase family Big_2 PF02368.13 gi|410670188|ref|YP_006922559.1| - 1.6e-10 40.6 9.4 1.6e-10 40.6 6.5 7.1 6 2 1 7 7 7 1 Bacterial Ig-like domain (group 2) Peptidase_M66 PF10462.4 gi|410670188|ref|YP_006922559.1| - 0.0061 15.4 10.2 0.11 11.2 0.3 3.7 3 0 0 3 3 3 2 Peptidase M66 DHBP_synthase PF00926.14 gi|410670188|ref|YP_006922559.1| - 4.1 6.5 18.1 0.26 10.4 0.7 3.8 4 0 0 4 4 4 0 3,4-dihydroxy-2-butanone 4-phosphate synthase Peptidase_S8 PF00082.17 gi|410670189|ref|YP_006922560.1| - 4.9e-53 180.1 10.7 4.9e-53 180.1 7.4 2.3 3 0 0 3 3 3 1 Subtilase family Peptidase_M22 PF00814.20 gi|410670190|ref|YP_006922561.1| - 7.9e-88 294.4 0.1 9.3e-88 294.1 0.1 1.0 1 0 0 1 1 1 1 Glycoprotease family CmcH_NodU PF02543.10 gi|410670190|ref|YP_006922561.1| - 0.058 12.5 0.0 0.081 12.0 0.0 1.2 1 0 0 1 1 1 0 Carbamoyltransferase RIO1 PF01163.17 gi|410670191|ref|YP_006922562.1| - 5.1e-12 45.5 0.0 7.3e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|410670191|ref|YP_006922562.1| - 3e-08 33.6 0.2 0.0007 19.3 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|410670191|ref|YP_006922562.1| - 2e-05 23.7 0.0 0.0011 18.0 0.0 2.1 1 1 1 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|410670191|ref|YP_006922562.1| - 0.00013 21.1 0.1 0.00025 20.2 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|410670191|ref|YP_006922562.1| - 0.0023 17.1 0.1 0.0029 16.8 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Choline_kinase PF01633.15 gi|410670191|ref|YP_006922562.1| - 0.0055 16.2 0.0 0.61 9.6 0.0 2.2 1 1 1 2 2 2 2 Choline/ethanolamine kinase Pkinase_Tyr PF07714.12 gi|410670191|ref|YP_006922562.1| - 0.11 11.5 0.0 0.18 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein tyrosine kinase EcKinase PF02958.15 gi|410670191|ref|YP_006922562.1| - 0.14 11.3 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase Ham1p_like PF01725.11 gi|410670192|ref|YP_006922563.1| - 1.9e-52 177.4 0.0 2.1e-52 177.2 0.0 1.0 1 0 0 1 1 1 1 Ham1 family JmjC PF02373.17 gi|410670193|ref|YP_006922564.1| - 0.073 13.3 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 JmjC domain, hydroxylase Arch_flagellin PF01917.11 gi|410670194|ref|YP_006922565.1| - 3.1e-37 128.0 9.4 9e-22 77.6 4.4 2.1 2 0 0 2 2 2 2 Archaebacterial flagellin Cyclase PF04199.8 gi|410670195|ref|YP_006922566.1| - 5.3e-28 97.8 0.0 6.6e-28 97.5 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase PHP PF02811.14 gi|410670196|ref|YP_006922567.1| - 2.8e-15 56.5 0.1 3.4e-15 56.2 0.1 1.2 1 0 0 1 1 1 1 PHP domain AAA_26 PF13500.1 gi|410670196|ref|YP_006922567.1| - 0.037 13.6 0.1 0.052 13.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain PhageP22-tail PF09251.5 gi|410670196|ref|YP_006922567.1| - 0.076 11.2 0.0 0.1 10.8 0.0 1.1 1 0 0 1 1 1 0 Salmonella phage P22 tail-spike TPR_12 PF13424.1 gi|410670197|ref|YP_006922568.1| - 4e-17 61.9 2.5 0.0022 17.9 0.0 5.8 2 2 3 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.1 gi|410670197|ref|YP_006922568.1| - 1.2e-11 44.0 9.9 0.00015 21.3 0.1 5.1 1 1 4 5 5 5 4 TPR repeat TPR_1 PF00515.23 gi|410670197|ref|YP_006922568.1| - 2.9e-07 29.8 15.5 4.7 6.9 0.0 9.2 10 1 0 10 10 10 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|410670197|ref|YP_006922568.1| - 5e-07 29.0 5.6 0.16 11.8 0.0 7.4 7 2 0 7 7 7 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|410670197|ref|YP_006922568.1| - 6e-06 26.0 5.4 0.018 14.9 0.0 4.9 5 0 0 5 5 5 2 Tetratricopeptide repeat SNAP PF14938.1 gi|410670197|ref|YP_006922568.1| - 2e-05 23.8 1.5 0.013 14.7 0.1 2.6 1 1 0 2 2 2 2 Soluble NSF attachment protein, SNAP TPR_2 PF07719.12 gi|410670197|ref|YP_006922568.1| - 5.1e-05 22.8 11.9 1 9.4 0.0 8.9 9 2 0 9 9 9 1 Tetratricopeptide repeat MIT PF04212.13 gi|410670197|ref|YP_006922568.1| - 9.6e-05 22.1 0.2 2.2 8.1 0.0 4.5 4 1 1 5 5 5 1 MIT (microtubule interacting and transport) domain TPR_6 PF13174.1 gi|410670197|ref|YP_006922568.1| - 0.0075 16.6 1.4 1.6e+02 3.1 0.0 5.5 6 0 0 6 6 6 0 Tetratricopeptide repeat BRO1 PF03097.13 gi|410670197|ref|YP_006922568.1| - 0.036 12.8 0.3 1.4 7.5 0.0 2.3 2 0 0 2 2 2 0 BRO1-like domain TPR_8 PF13181.1 gi|410670197|ref|YP_006922568.1| - 0.05 13.4 19.3 3.5 7.6 0.0 7.9 7 3 0 7 7 7 0 Tetratricopeptide repeat Sec8_exocyst PF04048.9 gi|410670197|ref|YP_006922568.1| - 0.16 11.5 1.7 5.3 6.6 0.0 3.0 3 0 0 3 3 3 0 Sec8 exocyst complex component specific domain FtsJ PF01728.14 gi|410670198|ref|YP_006922569.1| - 3.8e-56 189.9 0.0 4.7e-56 189.6 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|410670198|ref|YP_006922569.1| - 1.1e-09 37.9 1.1 2e-09 37.0 0.8 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_18 PF12847.2 gi|410670198|ref|YP_006922569.1| - 4.2e-06 27.3 0.2 0.0002 21.8 0.2 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|410670198|ref|YP_006922569.1| - 4.4e-06 26.3 0.0 8.3e-05 22.2 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|410670198|ref|YP_006922569.1| - 4.8e-06 26.3 0.0 6.6e-05 22.6 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Hexapep PF00132.19 gi|410670198|ref|YP_006922569.1| - 0.0024 17.2 0.2 0.0051 16.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial transferase hexapeptide (six repeats) Methyltransf_26 PF13659.1 gi|410670198|ref|YP_006922569.1| - 0.01 15.8 0.0 0.045 13.7 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|410670198|ref|YP_006922569.1| - 0.017 15.6 0.1 0.21 12.0 0.0 2.3 1 1 0 1 1 1 0 Methyltransferase domain CbiA PF01656.18 gi|410670198|ref|YP_006922569.1| - 0.1 12.0 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain eRF1_2 PF03464.10 gi|410670200|ref|YP_006922571.1| - 0.00048 20.4 0.0 0.00088 19.6 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 BBP1_C PF15272.1 gi|410670200|ref|YP_006922571.1| - 0.0083 15.6 2.2 0.014 14.9 1.5 1.3 1 0 0 1 1 1 1 Spindle pole body component BBP1, C-terminal GrpE PF01025.14 gi|410670200|ref|YP_006922571.1| - 0.011 15.3 4.1 0.031 13.8 1.8 2.1 2 0 0 2 2 2 0 GrpE DUF724 PF05266.9 gi|410670200|ref|YP_006922571.1| - 0.053 13.1 2.8 0.089 12.4 1.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Tropomyosin_1 PF12718.2 gi|410670200|ref|YP_006922571.1| - 0.075 12.8 5.6 0.16 11.8 3.9 1.4 1 0 0 1 1 1 0 Tropomyosin like mRNA_cap_C PF03919.10 gi|410670200|ref|YP_006922571.1| - 0.088 13.1 0.4 0.17 12.1 0.3 1.4 1 0 0 1 1 1 0 mRNA capping enzyme, C-terminal domain AATF-Che1 PF13339.1 gi|410670200|ref|YP_006922571.1| - 0.09 12.9 2.5 0.96 9.6 0.9 2.2 2 0 0 2 2 2 0 Apoptosis antagonizing transcription factor Mnd1 PF03962.10 gi|410670200|ref|YP_006922571.1| - 1.2 8.7 6.1 0.54 9.8 2.5 1.6 2 0 0 2 2 2 0 Mnd1 family FGE-sulfatase PF03781.11 gi|410670201|ref|YP_006922572.1| - 4.5e-46 157.3 6.6 2.1e-45 155.1 4.5 1.8 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 zf-Di19 PF05605.7 gi|410670202|ref|YP_006922573.1| - 0.031 14.3 0.1 0.04 14.0 0.0 1.2 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Peripla_BP_6 PF13458.1 gi|410670203|ref|YP_006922574.1| - 8.9e-30 104.1 0.4 1.1e-29 103.8 0.3 1.3 1 1 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|410670203|ref|YP_006922574.1| - 4.9e-22 78.2 0.1 1e-21 77.1 0.0 1.6 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|410670203|ref|YP_006922574.1| - 1.7e-06 27.0 0.0 2.7e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain LppC PF04348.8 gi|410670203|ref|YP_006922574.1| - 1.7e-06 26.8 0.0 2.3e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein CoA_binding_2 PF13380.1 gi|410670203|ref|YP_006922574.1| - 0.053 13.7 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 CoA binding domain Acetyltransf_1 PF00583.19 gi|410670204|ref|YP_006922575.1| - 1.8e-13 50.3 0.0 3.1e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|410670204|ref|YP_006922575.1| - 2e-08 34.3 0.0 2.6e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|410670204|ref|YP_006922575.1| - 5e-08 33.2 0.0 7.1e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|410670204|ref|YP_006922575.1| - 3.9e-07 29.7 0.0 7.3e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|410670204|ref|YP_006922575.1| - 2.1e-05 24.4 0.0 2.9e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|410670204|ref|YP_006922575.1| - 2.8e-05 24.0 0.0 4.4e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|410670204|ref|YP_006922575.1| - 0.00012 22.1 0.0 0.00021 21.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|410670204|ref|YP_006922575.1| - 0.00012 21.8 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Mec-17 PF05301.6 gi|410670204|ref|YP_006922575.1| - 0.0064 16.4 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Touch receptor neuron protein Mec-17 Acetyltransf_CG PF14542.1 gi|410670204|ref|YP_006922575.1| - 0.0071 16.2 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|410670204|ref|YP_006922575.1| - 0.098 12.2 0.1 0.22 11.1 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DFP PF04127.10 gi|410670205|ref|YP_006922576.1| - 2.8e-51 173.7 1.0 3.6e-49 166.9 0.1 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|410670205|ref|YP_006922576.1| - 4.4e-29 100.7 1.2 9.5e-29 99.6 0.8 1.6 1 0 0 1 1 1 1 Flavoprotein NAD_binding_10 PF13460.1 gi|410670205|ref|YP_006922576.1| - 0.00011 22.2 0.2 0.00099 19.1 0.0 2.2 2 0 0 2 2 2 1 NADH(P)-binding Glyco_transf_4 PF13439.1 gi|410670205|ref|YP_006922576.1| - 0.0041 16.8 0.3 0.15 11.7 0.0 2.4 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Pyr_redox PF00070.22 gi|410670205|ref|YP_006922576.1| - 0.0076 16.6 0.5 0.12 12.8 0.0 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GHMP_kinases_N PF00288.21 gi|410670206|ref|YP_006922577.1| - 7e-10 38.8 1.2 1.6e-09 37.7 0.8 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|410670206|ref|YP_006922577.1| - 0.0041 17.2 0.1 0.018 15.2 0.0 2.1 2 0 0 2 2 2 1 GHMP kinases C terminal DUF137 PF02006.11 gi|410670207|ref|YP_006922578.1| - 8.1e-74 246.8 1.6 9.9e-74 246.5 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 DUF1722 PF08349.6 gi|410670207|ref|YP_006922578.1| - 0.026 14.3 0.1 0.051 13.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1722) HD PF01966.17 gi|410670208|ref|YP_006922579.1| - 1.2e-13 51.1 2.3 1.4e-13 50.9 0.8 1.6 2 0 0 2 2 2 1 HD domain FolB PF02152.13 gi|410670208|ref|YP_006922579.1| - 0.082 13.0 0.0 15 5.7 0.0 2.2 2 0 0 2 2 2 0 Dihydroneopterin aldolase Amidohydro_1 PF01979.15 gi|410670209|ref|YP_006922580.1| - 5.2e-58 197.2 0.7 6.4e-58 196.9 0.5 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|410670209|ref|YP_006922580.1| - 7.5e-17 62.2 0.0 4.7e-16 59.6 0.0 2.2 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|410670209|ref|YP_006922580.1| - 1.4e-13 50.8 0.1 6.2e-12 45.4 0.0 2.4 2 0 0 2 2 2 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|410670209|ref|YP_006922580.1| - 5.9e-13 48.4 0.1 1.9e-12 46.7 0.1 2.0 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|410670209|ref|YP_006922580.1| - 0.0036 16.2 0.1 0.015 14.2 0.0 1.8 2 0 0 2 2 2 1 Adenosine/AMP deaminase AdoHcyase PF05221.12 gi|410670210|ref|YP_006922581.1| - 9.4e-58 195.2 0.0 1.2e-57 194.8 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|410670210|ref|YP_006922581.1| - 1.5e-49 167.9 1.3 1.5e-49 167.9 0.9 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|410670210|ref|YP_006922581.1| - 1.2e-09 37.5 0.3 2.5e-09 36.5 0.2 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|410670210|ref|YP_006922581.1| - 2.7e-07 30.1 0.2 4.7e-07 29.3 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|410670210|ref|YP_006922581.1| - 0.00047 19.7 0.1 0.0011 18.6 0.1 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain RNA_pol_Rpb5_C PF01191.14 gi|410670211|ref|YP_006922582.1| - 5.1e-31 106.0 0.4 5.6e-31 105.9 0.3 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain LEM PF03020.10 gi|410670211|ref|YP_006922582.1| - 0.062 12.7 0.0 1.3 8.5 0.0 2.2 2 0 0 2 2 2 0 LEM domain RNA_pol_Rpb2_1 PF04563.10 gi|410670212|ref|YP_006922583.1| - 6.6e-60 201.5 0.2 1.2e-59 200.7 0.1 1.4 2 0 0 2 2 2 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|410670212|ref|YP_006922583.1| - 5.7e-26 91.0 0.1 8.8e-26 90.4 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|410670212|ref|YP_006922583.1| - 4.7e-25 87.1 0.0 8.4e-25 86.3 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_6 PF00562.23 gi|410670213|ref|YP_006922584.1| - 8e-124 413.2 0.0 9.9e-124 412.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|410670213|ref|YP_006922584.1| - 2.1e-29 101.5 0.4 1.2e-28 99.1 0.0 2.4 3 0 0 3 3 3 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|410670213|ref|YP_006922584.1| - 4.2e-22 77.7 0.5 8.8e-22 76.6 0.4 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|410670213|ref|YP_006922584.1| - 2.6e-13 49.7 0.5 5.3e-13 48.7 0.4 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 zf-NADH-PPase PF09297.6 gi|410670213|ref|YP_006922584.1| - 0.014 14.9 1.0 0.078 12.5 0.0 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|410670213|ref|YP_006922584.1| - 0.04 13.1 1.8 0.11 11.7 1.2 1.8 1 1 0 1 1 1 0 zinc-ribbon domain RNA_pol_Rpb2_45 PF10385.4 gi|410670213|ref|YP_006922584.1| - 0.091 12.5 0.1 0.31 10.8 0.1 1.8 1 0 0 1 1 1 0 RNA polymerase beta subunit external 1 domain Nudix_N_2 PF14803.1 gi|410670213|ref|YP_006922584.1| - 0.098 12.3 1.8 13 5.5 0.0 2.9 3 0 0 3 3 3 0 Nudix N-terminal DUF1451 PF07295.6 gi|410670213|ref|YP_006922584.1| - 0.11 12.2 0.5 0.21 11.3 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DZR PF12773.2 gi|410670213|ref|YP_006922584.1| - 0.18 11.6 0.3 0.37 10.6 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon RNA_pol_Rpb1_1 PF04997.7 gi|410670214|ref|YP_006922585.1| - 1.3e-89 300.8 0.0 4.1e-53 180.8 0.0 2.3 1 1 1 2 2 2 2 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|410670214|ref|YP_006922585.1| - 2.9e-66 222.5 0.1 5.2e-66 221.6 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.12 gi|410670214|ref|YP_006922585.1| - 7.1e-34 115.7 0.1 2.1e-33 114.3 0.0 1.9 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.13 gi|410670214|ref|YP_006922585.1| - 1.1e-31 109.7 0.0 1.9e-31 108.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|410670214|ref|YP_006922585.1| - 6.6e-31 107.5 0.1 2e-30 105.9 0.1 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_5 PF04998.12 gi|410670215|ref|YP_006922586.1| - 3.3e-52 177.4 1.2 4.3e-52 177.0 0.9 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Peptidase_M24 PF00557.19 gi|410670215|ref|YP_006922586.1| - 0.038 13.5 0.0 0.14 11.7 0.0 2.0 2 1 1 3 3 3 0 Metallopeptidase family M24 NAC PF01849.13 gi|410670215|ref|YP_006922586.1| - 0.046 13.2 0.1 0.19 11.3 0.0 2.1 1 0 0 1 1 1 0 NAC domain RNA_pol_Rpb1_7 PF04990.7 gi|410670215|ref|YP_006922586.1| - 0.055 13.1 0.3 0.12 12.1 0.2 1.5 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 7 Ribosomal_L7Ae PF01248.21 gi|410670216|ref|YP_006922587.1| - 2e-14 52.8 0.3 2.4e-14 52.5 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Late_protein_L2 PF00513.13 gi|410670216|ref|YP_006922587.1| - 0.094 11.5 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Late Protein L2 KH_2 PF07650.12 gi|410670217|ref|YP_006922588.1| - 5e-23 80.4 5.6 3.4e-17 61.7 0.5 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|410670217|ref|YP_006922588.1| - 4.6e-15 55.1 1.9 1.7e-13 50.1 0.3 2.3 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|410670217|ref|YP_006922588.1| - 1.7e-06 27.5 1.5 0.0011 18.5 0.0 2.3 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|410670217|ref|YP_006922588.1| - 1.2e-05 24.8 1.2 0.078 12.6 0.0 2.5 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|410670217|ref|YP_006922588.1| - 0.24 11.0 4.0 9 6.0 0.1 2.6 2 0 0 2 2 2 0 KH domain Ribosom_S12_S23 PF00164.20 gi|410670218|ref|YP_006922589.1| - 4.4e-38 129.4 0.1 5.3e-38 129.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.16 gi|410670219|ref|YP_006922590.1| - 2.4e-37 127.8 7.4 2.7e-37 127.6 5.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.22 gi|410670220|ref|YP_006922591.1| - 1.9e-59 200.2 0.3 3.5e-59 199.4 0.2 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|410670220|ref|YP_006922591.1| - 2.3e-30 104.6 0.1 1e-29 102.5 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|410670220|ref|YP_006922591.1| - 4.9e-24 83.9 3.3 6.6e-24 83.5 0.7 2.3 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|410670220|ref|YP_006922591.1| - 1.2e-23 82.7 0.0 3.2e-23 81.3 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|410670220|ref|YP_006922591.1| - 1.4e-11 44.3 0.5 4.4e-11 42.7 0.3 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|410670220|ref|YP_006922591.1| - 9.7e-05 22.3 0.0 0.00022 21.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.17 gi|410670220|ref|YP_006922591.1| - 0.082 12.2 0.0 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 Ras family Septin PF00735.13 gi|410670220|ref|YP_006922591.1| - 0.09 11.7 0.7 0.19 10.6 0.0 1.8 2 0 0 2 2 2 0 Septin GTP_EFTU PF00009.22 gi|410670221|ref|YP_006922592.1| - 1.1e-56 191.2 0.0 1.4e-56 190.9 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|410670221|ref|YP_006922592.1| - 7.1e-30 103.1 0.6 2.4e-29 101.3 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|410670221|ref|YP_006922592.1| - 7.4e-17 61.2 1.8 1.4e-16 60.3 0.6 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|410670221|ref|YP_006922592.1| - 3.4e-07 30.2 0.0 8.7e-07 28.9 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|410670221|ref|YP_006922592.1| - 6.1e-06 26.7 0.0 0.00018 21.9 0.0 2.7 2 1 0 2 2 2 1 Miro-like protein Ras PF00071.17 gi|410670221|ref|YP_006922592.1| - 0.0032 16.8 0.4 0.017 14.5 0.0 2.0 2 0 0 2 2 2 1 Ras family Dynamin_N PF00350.18 gi|410670221|ref|YP_006922592.1| - 0.0039 17.0 0.0 1.1 9.0 0.0 2.4 1 1 0 1 1 1 1 Dynamin family GTP_EFTU_D4 PF14578.1 gi|410670221|ref|YP_006922592.1| - 0.0046 16.5 0.2 0.01 15.4 0.1 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Gtr1_RagA PF04670.7 gi|410670221|ref|YP_006922592.1| - 0.0052 15.9 0.0 0.08 12.0 0.0 2.0 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region FeoB_N PF02421.13 gi|410670221|ref|YP_006922592.1| - 0.015 14.5 0.0 0.61 9.3 0.0 2.9 2 1 0 2 2 2 0 Ferrous iron transport protein B Septin PF00735.13 gi|410670221|ref|YP_006922592.1| - 0.098 11.6 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Septin Ribosomal_S10 PF00338.17 gi|410670222|ref|YP_006922593.1| - 5.3e-29 99.9 0.0 5.9e-29 99.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e NadA PF02445.11 gi|410670223|ref|YP_006922594.1| - 2.2e-125 417.3 1.3 2.5e-125 417.1 0.9 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein ThiF PF00899.16 gi|410670224|ref|YP_006922595.1| - 2.3e-45 153.7 0.1 3.3e-45 153.2 0.1 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|410670224|ref|YP_006922595.1| - 3.6e-17 61.7 0.2 5.9e-17 61.0 0.1 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain ApbA PF02558.11 gi|410670224|ref|YP_006922595.1| - 0.015 14.7 0.0 0.022 14.1 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|410670224|ref|YP_006922595.1| - 0.054 13.6 0.6 0.11 12.6 0.1 1.9 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|410670224|ref|YP_006922595.1| - 0.13 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Aminotran_5 PF00266.14 gi|410670225|ref|YP_006922596.1| - 1.5e-19 69.9 0.0 2e-19 69.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V SLA_LP_auto_ag PF05889.8 gi|410670225|ref|YP_006922596.1| - 2.8e-18 65.5 0.0 4.2e-18 64.9 0.0 1.2 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Beta_elim_lyase PF01212.16 gi|410670225|ref|YP_006922596.1| - 2.1e-05 23.8 0.0 3.3e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|410670225|ref|YP_006922596.1| - 0.00014 21.0 0.3 0.0002 20.5 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|410670225|ref|YP_006922596.1| - 0.023 13.6 0.0 0.049 12.5 0.0 1.5 1 1 0 1 1 1 0 Aminotransferase class I and II HTH_38 PF13936.1 gi|410670226|ref|YP_006922597.1| - 4.2e-06 26.2 0.0 7.5e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|410670226|ref|YP_006922597.1| - 1e-05 25.0 0.0 2e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.1 gi|410670226|ref|YP_006922597.1| - 2.7e-05 23.4 0.0 4.9e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|410670226|ref|YP_006922597.1| - 3e-05 23.3 0.0 5.4e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|410670226|ref|YP_006922597.1| - 3.3e-05 23.6 0.0 6.3e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix MarR_2 PF12802.2 gi|410670226|ref|YP_006922597.1| - 5e-05 22.8 0.0 0.0001 21.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|410670226|ref|YP_006922597.1| - 0.00022 20.8 0.0 0.00096 18.7 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_37 PF13744.1 gi|410670226|ref|YP_006922597.1| - 0.00085 19.0 0.1 0.0021 17.8 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r3 PF04539.11 gi|410670226|ref|YP_006922597.1| - 0.0011 18.7 0.1 0.0038 17.0 0.0 2.0 1 1 1 2 2 2 1 Sigma-70 region 3 HTH_31 PF13560.1 gi|410670226|ref|YP_006922597.1| - 0.0029 17.7 0.0 0.0046 17.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|410670226|ref|YP_006922597.1| - 0.0038 17.2 0.1 0.0091 15.9 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|410670226|ref|YP_006922597.1| - 0.0077 15.3 0.0 0.016 14.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4 PF04545.11 gi|410670226|ref|YP_006922597.1| - 0.0078 15.4 0.0 0.018 14.3 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_19 PF12844.2 gi|410670226|ref|YP_006922597.1| - 0.0098 15.9 0.1 0.025 14.6 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|410670226|ref|YP_006922597.1| - 0.01 15.3 0.1 0.024 14.1 0.0 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|410670226|ref|YP_006922597.1| - 0.02 14.6 0.0 0.079 12.7 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|410670226|ref|YP_006922597.1| - 0.021 14.7 0.1 0.044 13.7 0.1 1.7 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF2316 PF10078.4 gi|410670226|ref|YP_006922597.1| - 0.023 14.6 0.0 0.034 14.1 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2316) GerE PF00196.14 gi|410670226|ref|YP_006922597.1| - 0.029 13.7 0.0 0.059 12.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_10 PF04967.7 gi|410670226|ref|YP_006922597.1| - 0.044 13.3 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_20 PF12840.2 gi|410670226|ref|YP_006922597.1| - 0.049 13.4 0.2 0.14 11.9 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_40 PF14493.1 gi|410670226|ref|YP_006922597.1| - 0.055 13.6 0.1 0.09 13.0 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain KorB PF08535.5 gi|410670226|ref|YP_006922597.1| - 0.096 12.8 0.0 0.17 12.0 0.0 1.6 1 1 0 1 1 1 0 KorB domain DUF2481 PF10654.4 gi|410670226|ref|YP_006922597.1| - 0.13 11.9 0.0 0.17 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) Aminotran_5 PF00266.14 gi|410670227|ref|YP_006922598.1| - 6.7e-123 410.0 0.0 7.6e-123 409.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|410670227|ref|YP_006922598.1| - 7.3e-11 41.7 0.1 9.5e-11 41.3 0.1 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|410670227|ref|YP_006922598.1| - 2.3e-09 36.7 0.0 3.2e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|410670227|ref|YP_006922598.1| - 7.8e-08 31.6 0.0 1.2e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|410670227|ref|YP_006922598.1| - 9.2e-07 27.4 0.1 2.9e-06 25.8 0.0 1.7 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.8 gi|410670227|ref|YP_006922598.1| - 0.0019 17.0 0.0 0.0074 15.0 0.0 1.8 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase SLA_LP_auto_ag PF05889.8 gi|410670227|ref|YP_006922598.1| - 0.0077 14.7 0.0 0.012 14.1 0.0 1.2 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Pyridoxal_deC PF00282.14 gi|410670227|ref|YP_006922598.1| - 0.098 11.0 0.0 0.27 9.6 0.0 1.7 2 0 0 2 2 2 0 Pyridoxal-dependent decarboxylase conserved domain FdhD-NarQ PF02634.10 gi|410670228|ref|YP_006922599.1| - 5.2e-66 222.4 0.1 6e-66 222.2 0.1 1.0 1 0 0 1 1 1 1 FdhD/NarQ family ThiS PF02597.15 gi|410670229|ref|YP_006922600.1| - 3.2e-08 33.8 0.1 3.4e-08 33.7 0.1 1.0 1 0 0 1 1 1 1 ThiS family DUF348 PF03990.9 gi|410670229|ref|YP_006922600.1| - 0.028 14.0 0.0 0.036 13.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF348) DUF1724 PF08350.5 gi|410670230|ref|YP_006922601.1| - 3.1e-23 81.0 0.0 6.5e-23 80.0 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_45 PF14947.1 gi|410670230|ref|YP_006922601.1| - 0.00085 19.0 0.1 0.0021 17.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|410670230|ref|YP_006922601.1| - 0.021 15.1 0.0 0.06 13.6 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain HAD_2 PF13419.1 gi|410670231|ref|YP_006922602.1| - 4.3e-22 79.1 0.0 5.1e-22 78.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|410670231|ref|YP_006922602.1| - 1.4e-12 48.4 0.0 1.6e-12 48.2 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|410670231|ref|YP_006922602.1| - 1.8e-08 33.9 0.0 2.9e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like FAD_binding_3 PF01494.14 gi|410670232|ref|YP_006922603.1| - 3.8e-15 55.8 4.1 2.9e-12 46.3 2.8 3.4 1 1 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|410670232|ref|YP_006922603.1| - 1.1e-10 40.9 0.2 3.1e-10 39.5 0.2 1.6 1 1 0 1 1 1 1 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|410670232|ref|YP_006922603.1| - 1.6e-10 40.6 2.4 2.5e-10 40.0 1.6 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|410670232|ref|YP_006922603.1| - 2.9e-09 36.3 1.1 1.2e-08 34.3 0.7 1.9 1 1 0 1 1 1 1 Thi4 family DAO PF01266.19 gi|410670232|ref|YP_006922603.1| - 7.6e-09 34.9 3.0 1e-06 27.9 0.3 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|410670232|ref|YP_006922603.1| - 3.2e-07 29.3 0.3 0.0011 17.6 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|410670232|ref|YP_006922603.1| - 3.9e-07 30.1 5.6 4.3e-07 30.0 3.6 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|410670232|ref|YP_006922603.1| - 5.8e-06 25.0 0.3 8.9e-06 24.4 0.2 1.2 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|410670232|ref|YP_006922603.1| - 9.1e-06 25.6 0.4 9.1e-06 25.6 0.3 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|410670232|ref|YP_006922603.1| - 4.8e-05 23.5 0.1 0.00016 21.7 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|410670232|ref|YP_006922603.1| - 5.3e-05 22.2 0.2 5.3e-05 22.2 0.2 1.6 2 0 0 2 2 1 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|410670232|ref|YP_006922603.1| - 0.0016 18.8 0.3 0.0067 16.8 0.1 2.2 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|410670232|ref|YP_006922603.1| - 0.0016 17.3 1.4 0.0016 17.3 1.0 1.8 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.13 gi|410670232|ref|YP_006922603.1| - 0.011 15.3 0.4 0.021 14.4 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|410670232|ref|YP_006922603.1| - 0.012 15.4 0.1 0.036 13.8 0.0 1.9 1 0 0 1 1 1 0 ThiF family NAD_binding_7 PF13241.1 gi|410670232|ref|YP_006922603.1| - 0.033 14.4 0.1 0.065 13.4 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.13 gi|410670232|ref|YP_006922603.1| - 0.04 13.9 0.1 0.11 12.4 0.0 1.8 1 0 0 1 1 1 0 TrkA-N domain ELFV_dehydrog PF00208.16 gi|410670232|ref|YP_006922603.1| - 0.048 13.2 0.1 0.084 12.4 0.1 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XdhC_C PF13478.1 gi|410670232|ref|YP_006922603.1| - 0.1 12.9 0.0 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain Peptidase_M22 PF00814.20 gi|410670232|ref|YP_006922603.1| - 0.12 11.9 0.3 0.27 10.6 0.0 1.7 2 0 0 2 2 2 0 Glycoprotease family 2-Hacid_dh_C PF02826.14 gi|410670232|ref|YP_006922603.1| - 0.12 11.4 0.1 0.24 10.5 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACT PF01842.20 gi|410670233|ref|YP_006922604.1| - 0.00024 20.5 0.4 0.0016 17.8 0.3 2.1 1 1 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|410670233|ref|YP_006922604.1| - 0.096 12.2 0.1 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 ACT domain HMGL-like PF00682.14 gi|410670234|ref|YP_006922605.1| - 1.1e-33 116.8 0.0 1.7e-33 116.2 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Iso_dh PF00180.15 gi|410670235|ref|YP_006922606.1| - 3.8e-84 282.6 0.0 4.7e-84 282.3 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase TatD_DNase PF01026.16 gi|410670236|ref|YP_006922607.1| - 2.9e-25 88.9 0.0 3.7e-25 88.6 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase DUF4147 PF13660.1 gi|410670237|ref|YP_006922608.1| - 1.2e-86 289.7 0.1 1.6e-86 289.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|410670237|ref|YP_006922608.1| - 1.9e-37 127.6 0.2 3.8e-37 126.6 0.1 1.5 1 0 0 1 1 1 1 MOFRL family PBP PF01161.15 gi|410670238|ref|YP_006922609.1| - 1.2e-38 132.2 0.0 1.3e-38 132.0 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein RELT PF12606.3 gi|410670239|ref|YP_006922610.1| - 1.7 7.8 3.9 2.8 7.1 2.7 1.3 1 0 0 1 1 1 0 Tumour necrosis factor receptor superfamily member 19 PspC PF04024.7 gi|410670240|ref|YP_006922611.1| - 1.1e-22 79.2 0.6 1.2e-22 79.1 0.4 1.0 1 0 0 1 1 1 1 PspC domain HxlR PF01638.12 gi|410670241|ref|YP_006922612.1| - 2.6e-25 87.8 0.5 3.1e-25 87.6 0.3 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix DUF2513 PF10711.4 gi|410670241|ref|YP_006922612.1| - 1.5e-05 24.9 0.1 2.1e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_12 PF08461.5 gi|410670241|ref|YP_006922612.1| - 0.00036 20.2 0.1 0.00056 19.5 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.2 gi|410670241|ref|YP_006922612.1| - 0.00036 20.2 0.0 0.00047 19.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain DUF505 PF04458.7 gi|410670241|ref|YP_006922612.1| - 0.0017 16.5 0.2 0.0018 16.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_34 PF13601.1 gi|410670241|ref|YP_006922612.1| - 0.0017 18.3 0.1 0.0023 17.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|410670241|ref|YP_006922612.1| - 0.0037 16.9 0.1 0.0054 16.4 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|410670241|ref|YP_006922612.1| - 0.0048 16.6 0.1 0.009 15.8 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix YjcQ PF09639.5 gi|410670241|ref|YP_006922612.1| - 0.012 15.6 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 YjcQ protein MarR PF01047.17 gi|410670241|ref|YP_006922612.1| - 0.028 14.1 0.0 0.039 13.6 0.0 1.3 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.2 gi|410670241|ref|YP_006922612.1| - 0.034 13.8 0.0 0.048 13.3 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|410670241|ref|YP_006922612.1| - 0.037 13.4 0.0 0.06 12.7 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF3116 PF11313.3 gi|410670241|ref|YP_006922612.1| - 0.05 13.2 0.0 0.074 12.6 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) SseB_C PF14581.1 gi|410670241|ref|YP_006922612.1| - 0.1 12.4 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 SseB protein C-terminal domain FeoC PF09012.5 gi|410670241|ref|YP_006922612.1| - 0.15 11.8 1.4 0.35 10.5 0.0 2.0 2 0 0 2 2 2 0 FeoC like transcriptional regulator NIR_SIR PF01077.17 gi|410670242|ref|YP_006922613.1| - 1.6e-34 118.5 0.0 2.2e-34 118.0 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|410670242|ref|YP_006922613.1| - 2.5e-17 62.2 0.0 5e-17 61.2 0.0 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain TPR_21 PF09976.4 gi|410670242|ref|YP_006922613.1| - 0.016 15.1 0.2 0.59 10.0 0.1 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat CGGC PF08821.6 gi|410670243|ref|YP_006922614.1| - 2.5e-23 82.1 0.3 2.8e-23 82.0 0.2 1.0 1 0 0 1 1 1 1 CGGC domain zf-DNL PF05180.7 gi|410670243|ref|YP_006922614.1| - 0.0009 18.9 0.2 0.0014 18.3 0.1 1.3 1 0 0 1 1 1 1 DNL zinc finger B12-binding PF02310.14 gi|410670243|ref|YP_006922614.1| - 0.008 16.0 0.0 0.0084 15.9 0.0 1.1 1 0 0 1 1 1 1 B12 binding domain Fer4_21 PF14697.1 gi|410670244|ref|YP_006922615.1| - 1.5e-09 37.5 6.6 1.5e-09 37.5 4.6 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|410670244|ref|YP_006922615.1| - 3.4e-07 29.5 12.2 1.4e-05 24.4 3.5 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|410670244|ref|YP_006922615.1| - 3.6e-07 30.4 14.4 0.00035 20.8 1.3 2.7 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410670244|ref|YP_006922615.1| - 7.8e-07 28.7 3.0 7.8e-07 28.7 2.1 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|410670244|ref|YP_006922615.1| - 2.7e-06 27.5 5.9 2.7e-06 27.5 4.1 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410670244|ref|YP_006922615.1| - 8.4e-06 25.4 6.5 8.4e-06 25.4 4.5 2.6 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410670244|ref|YP_006922615.1| - 4.2e-05 24.2 13.2 0.02 15.6 1.3 2.7 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|410670244|ref|YP_006922615.1| - 0.0011 19.4 8.4 0.0011 19.4 5.8 2.6 2 1 1 3 3 2 2 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|410670244|ref|YP_006922615.1| - 0.0018 18.0 4.1 0.0018 18.0 2.8 3.9 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_17 PF13534.1 gi|410670244|ref|YP_006922615.1| - 0.0053 17.0 10.1 0.27 11.6 0.3 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|410670244|ref|YP_006922615.1| - 0.04 13.7 1.8 8.2 6.3 0.1 3.2 2 1 1 3 3 3 0 Divergent 4Fe-4S mono-cluster Fer4_4 PF12800.2 gi|410670244|ref|YP_006922615.1| - 0.071 13.4 3.5 0.071 13.4 2.4 3.8 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|410670244|ref|YP_006922615.1| - 0.1 13.0 0.7 0.1 13.0 0.5 3.3 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|410670244|ref|YP_006922615.1| - 0.34 10.9 17.0 1.4 8.9 2.6 3.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|410670244|ref|YP_006922615.1| - 0.41 10.5 7.5 0.11 12.3 0.9 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain OrfB_Zn_ribbon PF07282.6 gi|410670244|ref|YP_006922615.1| - 6.1 6.5 7.3 0.35 10.5 0.5 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain GXGXG PF01493.14 gi|410670245|ref|YP_006922616.1| - 5e-18 64.8 25.3 9.3e-13 47.6 12.4 3.0 1 1 1 2 2 2 2 GXGXG motif NinE PF05322.6 gi|410670245|ref|YP_006922616.1| - 0.14 11.8 0.1 0.44 10.3 0.0 1.7 2 0 0 2 2 2 0 NINE Protein Phosphonate-bd PF12974.2 gi|410670246|ref|YP_006922617.1| - 7.5e-44 149.9 0.0 1.1e-43 149.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein HATPase_c PF02518.21 gi|410670246|ref|YP_006922617.1| - 3.3e-22 78.3 0.2 6.7e-22 77.3 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SBP_bac_3 PF00497.15 gi|410670246|ref|YP_006922617.1| - 1.3e-06 27.7 0.0 3.4e-05 23.2 0.0 2.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|410670246|ref|YP_006922617.1| - 0.00025 20.6 0.1 0.00098 18.7 0.0 1.9 1 1 0 1 1 1 1 NMT1/THI5 like HisKA PF00512.20 gi|410670246|ref|YP_006922617.1| - 0.002 18.0 0.0 0.0039 17.1 0.0 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|410670246|ref|YP_006922617.1| - 0.0022 17.7 0.0 0.0042 16.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|410670246|ref|YP_006922617.1| - 0.0084 15.7 0.1 0.023 14.4 0.1 1.7 1 0 0 1 1 1 1 GHKL domain DUF4549 PF15082.1 gi|410670246|ref|YP_006922617.1| - 0.16 11.6 0.7 0.36 10.4 0.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4549) PK PF00224.16 gi|410670247|ref|YP_006922618.1| - 6.1e-121 403.2 3.9 7.6e-121 402.9 2.7 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|410670247|ref|YP_006922618.1| - 9e-21 73.5 0.0 5.2e-20 71.1 0.0 2.2 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|410670247|ref|YP_006922618.1| - 0.00018 20.4 0.7 0.00051 18.9 0.1 1.9 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family CCG PF02754.11 gi|410670249|ref|YP_006922620.1| - 5.9e-36 122.3 3.1 4.4e-17 61.8 0.2 2.7 2 0 0 2 2 2 2 Cysteine-rich domain FAD_binding_4 PF01565.18 gi|410670249|ref|YP_006922620.1| - 9.7e-36 122.2 0.2 2.5e-35 120.9 0.1 1.7 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|410670249|ref|YP_006922620.1| - 4.5e-09 36.5 6.9 1.6e-08 34.7 4.8 2.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|410670249|ref|YP_006922620.1| - 6.6e-06 26.0 6.3 2.3e-05 24.3 4.4 2.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410670249|ref|YP_006922620.1| - 0.002 18.4 5.2 0.0057 17.0 3.6 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410670249|ref|YP_006922620.1| - 0.0031 17.2 8.1 0.01 15.5 4.9 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410670249|ref|YP_006922620.1| - 0.0078 16.4 9.5 0.012 15.8 5.0 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Flavodoxin_3 PF12641.2 gi|410670251|ref|YP_006922622.1| - 3.2e-21 75.4 0.0 3.7e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|410670251|ref|YP_006922622.1| - 2.4e-10 39.9 0.1 2.8e-05 23.5 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin Flavodoxin_5 PF12724.2 gi|410670251|ref|YP_006922622.1| - 9.8e-10 38.5 0.0 1.2e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|410670251|ref|YP_006922622.1| - 0.00022 21.2 0.0 0.00043 20.2 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin PspA_IM30 PF04012.7 gi|410670253|ref|YP_006922624.1| - 1e-29 103.4 23.3 1.2e-29 103.3 16.1 1.0 1 0 0 1 1 1 1 PspA/IM30 family Flagellin_C PF00700.16 gi|410670253|ref|YP_006922624.1| - 0.001 19.1 12.8 0.16 12.1 0.1 3.7 3 1 0 4 4 3 2 Bacterial flagellin C-terminal helical region DUF1664 PF07889.7 gi|410670253|ref|YP_006922624.1| - 0.0073 16.1 13.2 0.2 11.4 2.3 2.7 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) TMF_DNA_bd PF12329.3 gi|410670253|ref|YP_006922624.1| - 0.015 15.0 6.5 0.015 15.0 4.5 4.2 2 2 3 5 5 5 0 TATA element modulatory factor 1 DNA binding DUF972 PF06156.8 gi|410670253|ref|YP_006922624.1| - 0.046 14.0 16.5 1.2 9.5 2.8 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Filament PF00038.16 gi|410670253|ref|YP_006922624.1| - 0.049 13.0 21.6 0.32 10.4 4.8 2.6 1 1 1 2 2 2 0 Intermediate filament protein COG2 PF06148.6 gi|410670253|ref|YP_006922624.1| - 0.07 12.9 12.7 0.85 9.4 6.7 3.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DivIC PF04977.10 gi|410670253|ref|YP_006922624.1| - 0.076 12.5 16.6 0.29 10.6 1.4 3.5 3 0 0 3 3 3 0 Septum formation initiator Osmo_CC PF08946.5 gi|410670253|ref|YP_006922624.1| - 0.086 12.8 0.9 0.086 12.8 0.6 3.6 4 1 1 5 5 4 0 Osmosensory transporter coiled coil Reo_sigmaC PF04582.7 gi|410670253|ref|YP_006922624.1| - 0.21 10.7 8.9 1.6 7.8 0.9 2.1 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Baculo_PEP_C PF04513.7 gi|410670253|ref|YP_006922624.1| - 0.21 11.4 10.9 3.7 7.3 3.9 2.8 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF342 PF03961.8 gi|410670253|ref|YP_006922624.1| - 0.22 9.8 15.5 0.13 10.6 7.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Snf7 PF03357.16 gi|410670253|ref|YP_006922624.1| - 0.3 10.4 25.8 0.65 9.3 14.9 3.0 1 1 1 2 2 2 0 Snf7 Spc7 PF08317.6 gi|410670253|ref|YP_006922624.1| - 0.33 9.5 20.7 0.12 11.0 4.9 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein TPR_MLP1_2 PF07926.7 gi|410670253|ref|YP_006922624.1| - 0.33 10.7 20.5 3 7.5 0.4 2.3 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein IncA PF04156.9 gi|410670253|ref|YP_006922624.1| - 0.33 10.5 20.9 0.16 11.5 5.7 2.3 1 1 1 2 2 2 0 IncA protein DUF3584 PF12128.3 gi|410670253|ref|YP_006922624.1| - 0.5 7.6 20.7 0.11 9.8 4.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) CENP-F_leu_zip PF10473.4 gi|410670253|ref|YP_006922624.1| - 0.54 10.1 23.1 0.27 11.0 6.1 2.8 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prominin PF05478.6 gi|410670253|ref|YP_006922624.1| - 0.59 7.6 6.2 0.74 7.2 4.3 1.2 1 0 0 1 1 1 0 Prominin APG6 PF04111.7 gi|410670253|ref|YP_006922624.1| - 0.61 9.0 21.9 0.22 10.5 12.5 1.9 1 1 1 2 2 2 0 Autophagy protein Apg6 BLOC1_2 PF10046.4 gi|410670253|ref|YP_006922624.1| - 0.63 10.2 19.5 3.4 7.8 0.4 3.8 2 2 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GP20 PF06810.6 gi|410670253|ref|YP_006922624.1| - 0.89 8.9 22.2 0.015 14.7 6.5 2.9 1 1 2 3 3 3 0 Phage minor structural protein GP20 COG5 PF10392.4 gi|410670253|ref|YP_006922624.1| - 0.91 9.4 10.1 1.1 9.2 5.3 2.4 1 1 1 2 2 2 0 Golgi transport complex subunit 5 Allexi_40kDa PF05549.6 gi|410670253|ref|YP_006922624.1| - 1.1 8.4 8.0 1.3 8.2 3.8 2.2 1 1 2 3 3 3 0 Allexivirus 40kDa protein DUF948 PF06103.6 gi|410670253|ref|YP_006922624.1| - 1.2 8.9 11.7 2.8 7.8 0.8 3.7 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) Scaffolding_pro PF11418.3 gi|410670253|ref|YP_006922624.1| - 1.4 9.2 14.0 27 5.1 0.1 3.3 1 1 2 3 3 3 0 Phi29 scaffolding protein DUF3086 PF11285.3 gi|410670253|ref|YP_006922624.1| - 1.6 7.4 10.1 2.1 7.0 6.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3086) Snapin_Pallidin PF14712.1 gi|410670253|ref|YP_006922624.1| - 1.7 9.0 19.1 0.6 10.4 2.6 3.5 2 1 0 3 3 2 0 Snapin/Pallidin AAA_13 PF13166.1 gi|410670253|ref|YP_006922624.1| - 1.7 6.9 17.0 3.1 6.1 11.7 1.4 1 1 0 1 1 1 0 AAA domain DUF2203 PF09969.4 gi|410670253|ref|YP_006922624.1| - 3.1 8.0 14.7 0.44 10.7 1.9 3.1 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) DUF1993 PF09351.5 gi|410670253|ref|YP_006922624.1| - 3.4 7.5 6.1 3.6 7.5 3.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1993) DUF2937 PF11157.3 gi|410670253|ref|YP_006922624.1| - 6.4 6.0 8.0 7.3 5.8 4.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2937) ADIP PF11559.3 gi|410670253|ref|YP_006922624.1| - 8.6 6.2 21.7 0.34 10.7 2.9 2.9 1 1 1 3 3 3 0 Afadin- and alpha -actinin-Binding Syntaxin-6_N PF09177.6 gi|410670253|ref|YP_006922624.1| - 9.9 6.6 13.5 14 6.1 0.7 3.3 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Peptidase_M48 PF01435.13 gi|410670256|ref|YP_006922627.1| - 6e-42 143.7 0.0 9.2e-42 143.1 0.0 1.2 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|410670256|ref|YP_006922627.1| - 1.2e-06 27.7 0.0 4.2e-06 25.9 0.0 1.9 2 0 0 2 2 2 1 BlaR1 peptidase M56 DUF1129 PF06570.6 gi|410670256|ref|YP_006922627.1| - 0.027 13.7 8.9 0.057 12.7 0.2 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1129) ABC2_membrane_4 PF12730.2 gi|410670256|ref|YP_006922627.1| - 0.33 10.0 15.6 0.14 11.3 1.9 2.3 2 0 0 2 2 2 0 ABC-2 family transporter protein Pex24p PF06398.6 gi|410670256|ref|YP_006922627.1| - 0.43 9.3 3.4 1 8.1 2.3 1.7 1 1 0 1 1 1 0 Integral peroxisomal membrane peroxin PrgI PF12666.2 gi|410670256|ref|YP_006922627.1| - 0.44 10.7 6.8 5.3 7.2 0.9 2.4 2 0 0 2 2 2 0 PrgI family protein DUF3989 PF13150.1 gi|410670256|ref|YP_006922627.1| - 1.2 8.6 4.2 2.7 7.5 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3989) ABC_tran PF00005.22 gi|410670257|ref|YP_006922628.1| - 2.1e-20 73.4 0.5 7.7e-09 35.9 0.1 4.4 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|410670257|ref|YP_006922628.1| - 1.9e-10 40.3 0.1 0.015 14.5 0.0 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|410670257|ref|YP_006922628.1| - 1.6e-07 31.5 0.0 0.0013 18.7 0.0 3.1 3 0 0 3 3 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|410670257|ref|YP_006922628.1| - 3.8e-07 30.9 5.0 0.0063 17.3 0.0 4.2 4 0 0 4 4 3 2 AAA domain AAA_29 PF13555.1 gi|410670257|ref|YP_006922628.1| - 1.3e-06 27.7 0.4 0.036 13.5 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|410670257|ref|YP_006922628.1| - 2.8e-06 27.5 10.2 0.0023 17.9 0.0 4.3 4 0 0 4 4 4 2 AAA domain AAA_18 PF13238.1 gi|410670257|ref|YP_006922628.1| - 3.1e-06 27.5 0.4 0.035 14.4 0.0 3.3 3 0 0 3 3 2 2 AAA domain AAA_33 PF13671.1 gi|410670257|ref|YP_006922628.1| - 3.8e-06 26.8 0.0 0.081 12.7 0.0 3.6 3 0 0 3 3 3 2 AAA domain AAA_14 PF13173.1 gi|410670257|ref|YP_006922628.1| - 1.2e-05 25.2 0.2 0.74 9.7 0.0 3.7 3 1 0 3 3 3 2 AAA domain DUF258 PF03193.11 gi|410670257|ref|YP_006922628.1| - 1.3e-05 24.4 0.2 0.14 11.3 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|410670257|ref|YP_006922628.1| - 1.6e-05 25.0 1.1 0.27 11.3 0.0 4.0 4 0 0 4 4 4 2 AAA domain AAA_23 PF13476.1 gi|410670257|ref|YP_006922628.1| - 1.8e-05 25.1 2.3 0.043 14.1 0.1 2.8 3 0 0 3 3 2 2 AAA domain MMR_HSR1 PF01926.18 gi|410670257|ref|YP_006922628.1| - 7e-05 22.7 0.2 0.016 15.1 0.0 3.2 3 0 0 3 3 3 1 50S ribosome-binding GTPase BCA_ABC_TP_C PF12399.3 gi|410670257|ref|YP_006922628.1| - 7.7e-05 22.2 1.9 0.017 14.7 0.3 2.5 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter AAA_25 PF13481.1 gi|410670257|ref|YP_006922628.1| - 9.1e-05 21.9 0.1 0.11 11.8 0.0 2.9 3 0 0 3 3 2 1 AAA domain APS_kinase PF01583.15 gi|410670257|ref|YP_006922628.1| - 9.5e-05 22.1 0.1 0.42 10.2 0.0 2.7 2 0 0 2 2 2 2 Adenylylsulphate kinase AAA_10 PF12846.2 gi|410670257|ref|YP_006922628.1| - 0.00019 20.9 0.0 0.083 12.3 0.0 2.5 2 0 0 2 2 2 1 AAA-like domain Viral_helicase1 PF01443.13 gi|410670257|ref|YP_006922628.1| - 0.0002 20.9 0.0 0.0078 15.7 0.0 2.6 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase T2SE PF00437.15 gi|410670257|ref|YP_006922628.1| - 0.00027 19.9 0.3 0.24 10.2 0.0 2.5 2 0 0 2 2 2 2 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|410670257|ref|YP_006922628.1| - 0.0003 20.5 0.4 0.6 9.7 0.0 3.2 3 0 0 3 3 3 1 Archaeal ATPase AAA_15 PF13175.1 gi|410670257|ref|YP_006922628.1| - 0.00031 19.9 0.1 0.47 9.4 0.0 3.5 4 0 0 4 4 4 1 AAA ATPase domain MobB PF03205.9 gi|410670257|ref|YP_006922628.1| - 0.00036 20.2 0.5 0.03 14.0 0.1 2.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B DnaJ_CXXCXGXG PF00684.14 gi|410670257|ref|YP_006922628.1| - 0.00062 19.7 12.6 0.028 14.4 0.1 3.8 4 0 0 4 4 3 2 DnaJ central domain cobW PF02492.14 gi|410670257|ref|YP_006922628.1| - 0.0019 17.6 0.2 0.11 11.8 0.0 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|410670257|ref|YP_006922628.1| - 0.0034 17.0 0.1 3.9 7.3 0.0 2.9 2 0 0 2 2 2 0 Part of AAA domain PRK PF00485.13 gi|410670257|ref|YP_006922628.1| - 0.0038 16.8 0.1 0.72 9.3 0.0 2.5 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family NACHT PF05729.7 gi|410670257|ref|YP_006922628.1| - 0.0045 16.6 0.0 0.8 9.3 0.0 2.7 2 0 0 2 2 2 1 NACHT domain DUF2075 PF09848.4 gi|410670257|ref|YP_006922628.1| - 0.0056 15.6 0.0 2.5 7.0 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.7 gi|410670257|ref|YP_006922628.1| - 0.01 14.9 0.0 3 6.8 0.0 2.6 2 0 0 2 2 2 0 Zeta toxin NTPase_1 PF03266.10 gi|410670257|ref|YP_006922628.1| - 0.011 15.4 0.3 0.41 10.3 0.1 3.0 2 0 0 2 2 2 0 NTPase KaiC PF06745.8 gi|410670257|ref|YP_006922628.1| - 0.018 14.1 0.1 5.1 6.1 0.0 2.7 2 0 0 2 2 2 0 KaiC ArgK PF03308.11 gi|410670257|ref|YP_006922628.1| - 0.02 13.6 0.2 0.72 8.5 0.0 2.8 3 0 0 3 3 3 0 ArgK protein RNA_helicase PF00910.17 gi|410670257|ref|YP_006922628.1| - 0.028 14.5 0.0 2.1 8.5 0.0 2.6 2 0 0 2 2 2 0 RNA helicase KAP_NTPase PF07693.9 gi|410670257|ref|YP_006922628.1| - 0.034 13.1 0.2 7.4 5.4 0.0 3.6 4 0 0 4 4 4 0 KAP family P-loop domain Miro PF08477.8 gi|410670257|ref|YP_006922628.1| - 0.05 14.0 0.0 16 6.0 0.0 2.8 2 0 0 2 2 2 0 Miro-like protein AAA_28 PF13521.1 gi|410670257|ref|YP_006922628.1| - 0.052 13.5 0.1 4.8 7.1 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|410670257|ref|YP_006922628.1| - 0.066 12.7 0.0 16 5.0 0.0 2.9 3 0 0 3 3 3 0 AAA domain RNA12 PF10443.4 gi|410670257|ref|YP_006922628.1| - 0.1 11.0 0.0 8 4.8 0.0 2.2 2 0 0 2 2 2 0 RNA12 protein PucR PF07905.6 gi|410670257|ref|YP_006922628.1| - 0.11 12.0 0.1 7 6.2 0.0 2.9 3 0 0 3 3 3 0 Purine catabolism regulatory protein-like family KTI12 PF08433.5 gi|410670257|ref|YP_006922628.1| - 0.13 11.4 0.0 18 4.3 0.0 2.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 NB-ARC PF00931.17 gi|410670257|ref|YP_006922628.1| - 0.18 10.6 0.6 8.3 5.1 0.0 3.0 4 0 0 4 4 4 0 NB-ARC domain Zn-ribbon_8 PF09723.5 gi|410670257|ref|YP_006922628.1| - 0.22 11.4 13.6 0.08 12.9 0.6 4.2 4 0 0 4 4 4 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|410670257|ref|YP_006922628.1| - 1.1 9.5 9.7 8.2 6.8 0.0 4.4 4 1 0 4 4 4 0 Restriction alleviation protein Lar DUF2173 PF09941.4 gi|410670258|ref|YP_006922629.1| - 2.4e-29 101.4 0.3 2.7e-29 101.2 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2173) Herpes_IE1 PF07340.6 gi|410670258|ref|YP_006922629.1| - 0.034 12.5 0.0 0.043 12.2 0.0 1.1 1 0 0 1 1 1 0 Cytomegalovirus IE1 protein Proteasome_A_N PF10584.4 gi|410670258|ref|YP_006922629.1| - 0.09 12.1 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Proteasome subunit A N-terminal signature Rubrerythrin PF02915.12 gi|410670259|ref|YP_006922630.1| - 6e-26 91.3 6.8 8.4e-25 87.6 4.7 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|410670259|ref|YP_006922630.1| - 6.1e-06 26.0 0.8 8e-06 25.6 0.6 1.2 1 0 0 1 1 1 1 Ferritin-like domain DZR PF12773.2 gi|410670259|ref|YP_006922630.1| - 0.072 12.9 0.7 0.12 12.2 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|410670259|ref|YP_006922630.1| - 0.083 12.5 0.3 0.13 11.9 0.2 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-HIT PF04438.11 gi|410670259|ref|YP_006922630.1| - 0.15 11.6 2.4 1.8 8.2 0.1 2.2 2 0 0 2 2 2 0 HIT zinc finger RecR PF02132.10 gi|410670259|ref|YP_006922630.1| - 0.26 10.7 1.0 0.64 9.4 0.7 1.6 1 0 0 1 1 1 0 RecR protein Rubredoxin PF00301.15 gi|410670259|ref|YP_006922630.1| - 0.75 9.7 4.9 50 3.8 3.4 2.4 1 1 0 1 1 1 0 Rubredoxin zf-ribbon_3 PF13248.1 gi|410670259|ref|YP_006922630.1| - 0.8 8.9 6.1 1.7 7.9 4.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Ogr_Delta PF04606.7 gi|410670259|ref|YP_006922630.1| - 1.1 8.9 3.6 2.7 7.7 0.0 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Rad50_zn_hook PF04423.9 gi|410670259|ref|YP_006922630.1| - 1.4 8.4 4.2 24 4.4 0.0 2.9 3 0 0 3 3 3 0 Rad50 zinc hook motif A2L_zn_ribbon PF08792.5 gi|410670259|ref|YP_006922630.1| - 1.8 8.1 5.1 0.28 10.7 0.3 1.9 2 0 0 2 2 2 0 A2L zinc ribbon domain DDE_Tnp_IS1 PF03400.8 gi|410670260|ref|YP_006922631.1| - 2.9e-08 33.8 0.1 3.2e-08 33.7 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase Ferritin PF00210.19 gi|410670261|ref|YP_006922632.1| - 4.3e-29 101.0 7.5 5.1e-29 100.8 5.2 1.1 1 0 0 1 1 1 1 Ferritin-like domain Phenol_Hydrox PF02332.13 gi|410670261|ref|YP_006922632.1| - 0.0011 18.2 0.1 0.0025 17.1 0.0 1.6 2 0 0 2 2 2 1 Methane/Phenol/Toluene Hydroxylase Rubrerythrin PF02915.12 gi|410670261|ref|YP_006922632.1| - 0.0077 16.5 6.2 0.05 13.9 3.6 2.0 1 1 1 2 2 2 2 Rubrerythrin DUF892 PF05974.7 gi|410670261|ref|YP_006922632.1| - 0.01 15.6 1.4 0.012 15.4 0.1 1.7 2 1 0 2 2 2 0 Domain of unknown function (DUF892) Lyase_1 PF00206.15 gi|410670262|ref|YP_006922633.1| - 1.5e-54 185.3 2.0 2e-54 184.9 0.4 1.7 2 0 0 2 2 2 1 Lyase ADSL_C PF10397.4 gi|410670262|ref|YP_006922633.1| - 1.6e-26 92.0 0.1 3.7e-26 90.9 0.0 1.7 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus ASL_C2 PF14698.1 gi|410670262|ref|YP_006922633.1| - 0.024 14.6 1.2 4.9 7.2 0.0 3.8 4 0 0 4 4 4 0 Argininosuccinate lyase C-terminal DDE_3 PF13358.1 gi|410670264|ref|YP_006922635.1| - 2.8e-23 82.2 0.1 3.9e-23 81.8 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|410670264|ref|YP_006922635.1| - 1.2e-09 38.2 0.0 2.1e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|410670264|ref|YP_006922635.1| - 9.1e-09 34.7 0.2 1.1e-08 34.5 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|410670264|ref|YP_006922635.1| - 0.009 14.7 0.0 0.01 14.6 0.0 1.2 1 0 0 1 1 1 1 Rhodopirellula transposase DDE domain DUF3800 PF12686.2 gi|410670264|ref|YP_006922635.1| - 0.047 13.3 0.0 0.057 13.0 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) Ribosomal_S2 PF00318.15 gi|410670264|ref|YP_006922635.1| - 0.05 12.8 3.3 0.58 9.3 2.3 2.0 1 1 0 1 1 1 0 Ribosomal protein S2 HTH_29 PF13551.1 gi|410670265|ref|YP_006922636.1| - 2.1e-16 60.0 0.0 3.3e-16 59.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410670265|ref|YP_006922636.1| - 2.7e-10 40.9 0.4 5.5e-10 39.9 0.1 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|410670265|ref|YP_006922636.1| - 5.9e-09 35.3 0.4 1.2e-08 34.3 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|410670265|ref|YP_006922636.1| - 1.4e-06 27.7 0.1 5.3e-06 25.8 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|410670265|ref|YP_006922636.1| - 2.6e-05 24.1 0.0 6.3e-05 22.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_21 PF13276.1 gi|410670265|ref|YP_006922636.1| - 0.031 14.2 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 HTH-like domain Ammonium_transp PF00909.16 gi|410670267|ref|YP_006922638.1| - 2.1e-127 424.9 39.5 2.3e-127 424.7 27.4 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.17 gi|410670268|ref|YP_006922639.1| - 1.2e-34 118.8 1.7 1.3e-34 118.6 1.2 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II PHP PF02811.14 gi|410670269|ref|YP_006922640.1| - 3.1e-11 43.3 0.0 6.1e-11 42.4 0.0 1.5 1 1 0 1 1 1 1 PHP domain GATase PF00117.23 gi|410670271|ref|YP_006922642.1| - 2.7e-18 66.1 0.0 3.7e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|410670271|ref|YP_006922642.1| - 6.2e-05 22.5 0.0 0.0036 16.7 0.0 2.3 2 0 0 2 2 2 1 Peptidase C26 GATase_3 PF07685.9 gi|410670271|ref|YP_006922642.1| - 0.0002 20.9 0.0 0.00038 20.0 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|410670271|ref|YP_006922642.1| - 0.023 14.1 0.0 0.043 13.2 0.0 1.6 1 1 0 1 1 1 0 DJ-1/PfpI family DUF2124 PF09897.4 gi|410670271|ref|YP_006922642.1| - 0.031 13.9 0.0 0.12 12.0 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2124) MMR_HSR1 PF01926.18 gi|410670273|ref|YP_006922644.1| - 3.7e-17 62.3 0.4 1.6e-13 50.6 0.0 2.4 2 1 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|410670273|ref|YP_006922644.1| - 1.1e-10 41.0 2.8 0.00025 20.3 0.6 3.0 2 1 0 2 2 2 2 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|410670273|ref|YP_006922644.1| - 1.6e-05 24.3 0.3 0.0044 16.4 0.0 2.3 1 1 0 2 2 2 2 Elongation factor Tu GTP binding domain DUF258 PF03193.11 gi|410670273|ref|YP_006922644.1| - 0.00044 19.4 0.1 0.00076 18.6 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|410670273|ref|YP_006922644.1| - 0.00046 20.0 2.6 4.3 7.1 0.1 3.2 2 1 1 3 3 3 2 Dynamin family AIG1 PF04548.11 gi|410670273|ref|YP_006922644.1| - 0.0005 19.2 0.0 0.00086 18.4 0.0 1.4 1 0 0 1 1 1 1 AIG1 family Miro PF08477.8 gi|410670273|ref|YP_006922644.1| - 0.04 14.4 0.2 0.84 10.1 0.0 2.5 2 1 0 2 2 2 0 Miro-like protein ATP_bind_1 PF03029.12 gi|410670273|ref|YP_006922644.1| - 0.11 11.9 0.7 0.24 10.9 0.0 1.9 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein cobW PF02492.14 gi|410670273|ref|YP_006922644.1| - 0.18 11.2 1.4 0.2 11.0 0.1 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Nitroreductase PF00881.19 gi|410670274|ref|YP_006922645.1| - 1.2e-31 109.7 0.1 1.5e-31 109.4 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Fer4_7 PF12838.2 gi|410670274|ref|YP_006922645.1| - 9e-09 35.5 4.5 0.00043 20.5 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|410670274|ref|YP_006922645.1| - 4e-08 32.5 16.3 0.0003 20.2 2.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|410670274|ref|YP_006922645.1| - 6.3e-07 30.0 4.4 0.00046 20.8 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|410670274|ref|YP_006922645.1| - 6.5e-07 28.9 12.8 0.0008 19.1 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|410670274|ref|YP_006922645.1| - 8.5e-07 28.6 10.8 1.3e-05 24.8 8.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410670274|ref|YP_006922645.1| - 9.4e-07 29.0 9.9 1.8e-06 28.1 6.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410670274|ref|YP_006922645.1| - 1.3e-05 25.4 4.0 0.018 15.3 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|410670274|ref|YP_006922645.1| - 1.8e-05 24.6 7.8 3.8e-05 23.6 5.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410670274|ref|YP_006922645.1| - 6.8e-05 22.5 13.6 0.036 13.9 2.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|410670274|ref|YP_006922645.1| - 0.00041 20.1 6.9 0.00086 19.1 4.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410670274|ref|YP_006922645.1| - 0.0033 17.6 11.8 0.017 15.4 1.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|410670274|ref|YP_006922645.1| - 0.0043 17.4 8.3 0.069 13.5 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|410670274|ref|YP_006922645.1| - 0.0051 17.3 5.2 0.31 11.6 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|410670274|ref|YP_006922645.1| - 0.035 14.5 10.5 0.18 12.2 0.8 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|410670274|ref|YP_006922645.1| - 0.56 10.8 17.1 1 10.1 3.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain FMN_red PF03358.10 gi|410670275|ref|YP_006922646.1| - 4.1e-26 91.2 0.0 5.1e-26 91.0 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|410670275|ref|YP_006922646.1| - 2.6e-12 46.6 0.0 3.2e-12 46.3 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold POX PF07526.6 gi|410670276|ref|YP_006922647.1| - 0.31 11.2 2.3 0.37 11.0 1.6 1.1 1 0 0 1 1 1 0 Associated with HOX Paramyxo_C PF01692.13 gi|410670276|ref|YP_006922647.1| - 0.38 10.3 3.1 0.45 10.1 2.2 1.0 1 0 0 1 1 1 0 Paramyxovirus non-structural protein c Anthrax_toxA PF03497.11 gi|410670277|ref|YP_006922648.1| - 0.15 11.8 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Anthrax toxin LF subunit FYVE_2 PF02318.11 gi|410670278|ref|YP_006922649.1| - 0.011 15.5 20.1 0.027 14.3 4.0 2.6 1 1 2 3 3 3 0 FYVE-type zinc finger zf-C3HC4_3 PF13920.1 gi|410670278|ref|YP_006922649.1| - 0.027 14.1 0.5 0.027 14.1 0.4 3.6 3 1 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) PHD PF00628.24 gi|410670278|ref|YP_006922649.1| - 0.034 13.8 4.8 0.034 13.8 3.3 2.7 2 1 0 2 2 2 0 PHD-finger DZR PF12773.2 gi|410670278|ref|YP_006922649.1| - 0.13 12.1 19.1 43 4.0 3.8 3.3 1 1 1 2 2 2 0 Double zinc ribbon PVL_ORF50 PF07768.6 gi|410670278|ref|YP_006922649.1| - 0.19 11.7 3.8 8.2 6.4 0.0 2.4 1 1 1 2 2 2 0 PVL ORF-50-like family IBR PF01485.16 gi|410670278|ref|YP_006922649.1| - 0.65 9.9 23.2 0.093 12.6 6.0 3.3 1 1 2 3 3 3 0 IBR domain MADF_DNA_bdg PF10545.4 gi|410670278|ref|YP_006922649.1| - 2.7 8.2 5.9 5.8 7.1 0.2 3.0 2 1 0 2 2 2 0 Alcohol dehydrogenase transcription factor Myb/SANT-like Transposase_mut PF00872.13 gi|410670279|ref|YP_006922650.1| - 4.3e-114 381.0 3.0 5.3e-114 380.7 2.1 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|410670279|ref|YP_006922650.1| - 1e-14 54.4 0.0 9.6e-14 51.3 0.0 2.4 2 0 0 2 2 2 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|410670279|ref|YP_006922650.1| - 0.00012 21.4 0.1 0.00021 20.5 0.0 1.5 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_ISL3 PF01610.12 gi|410670279|ref|YP_006922650.1| - 0.01 15.4 0.3 0.01 15.4 0.2 1.9 2 1 0 2 2 2 0 Transposase NOP5NT PF08156.8 gi|410670279|ref|YP_006922650.1| - 0.019 15.1 1.7 0.4 10.8 0.3 2.4 2 0 0 2 2 2 0 NOP5NT (NUC127) domain RNA_binding PF01877.12 gi|410670279|ref|YP_006922650.1| - 1.3 9.0 5.5 1.7 8.6 1.0 2.6 2 0 0 2 2 2 0 RNA binding DZR PF12773.2 gi|410670280|ref|YP_006922651.1| - 2.8e-05 23.8 7.6 0.0052 16.5 3.6 2.5 1 1 1 2 2 2 1 Double zinc ribbon FYVE PF01363.16 gi|410670280|ref|YP_006922651.1| - 0.0002 21.1 8.9 0.00096 18.9 6.2 1.9 1 1 0 1 1 1 1 FYVE zinc finger zinc_ribbon_2 PF13240.1 gi|410670280|ref|YP_006922651.1| - 0.00088 18.6 15.4 0.005 16.2 0.3 3.7 3 1 0 3 3 3 1 zinc-ribbon domain IBR PF01485.16 gi|410670280|ref|YP_006922651.1| - 0.0011 18.8 7.6 0.0011 18.8 5.2 2.2 1 1 1 2 2 2 1 IBR domain zf-ribbon_3 PF13248.1 gi|410670280|ref|YP_006922651.1| - 0.003 16.6 0.1 0.003 16.6 0.1 3.9 3 1 0 3 3 3 1 zinc-ribbon domain zf-RING_2 PF13639.1 gi|410670280|ref|YP_006922651.1| - 0.0042 16.8 3.8 0.02 14.6 1.8 2.3 3 0 0 3 3 2 1 Ring finger domain DUF1219 PF06755.7 gi|410670280|ref|YP_006922651.1| - 0.011 15.2 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1219) zf-C2H2_4 PF13894.1 gi|410670280|ref|YP_006922651.1| - 0.013 15.7 7.6 9.3 6.8 0.0 3.3 3 0 0 3 3 3 0 C2H2-type zinc finger zf-RING_3 PF14369.1 gi|410670280|ref|YP_006922651.1| - 0.015 15.2 1.6 0.015 15.2 1.1 3.0 2 1 1 3 3 3 0 zinc-finger EMP70 PF02990.11 gi|410670280|ref|YP_006922651.1| - 0.028 12.9 1.2 0.028 12.8 0.8 1.0 1 0 0 1 1 1 0 Endomembrane protein 70 zf-H2C2_2 PF13465.1 gi|410670280|ref|YP_006922651.1| - 0.053 13.8 4.6 9.6 6.6 0.1 3.5 3 0 0 3 3 3 0 Zinc-finger double domain zf-RING_4 PF14570.1 gi|410670280|ref|YP_006922651.1| - 0.063 12.8 9.3 0.036 13.6 3.9 2.1 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain PPP5 PF08321.7 gi|410670280|ref|YP_006922651.1| - 0.12 12.4 0.8 1.2 9.2 0.3 2.2 1 1 1 2 2 2 0 PPP5 TPR repeat region zf-C2H2 PF00096.21 gi|410670280|ref|YP_006922651.1| - 0.35 11.3 15.2 3.4 8.1 0.1 3.5 3 0 0 3 3 3 0 Zinc finger, C2H2 type FrhB_FdhB_C PF04432.8 gi|410670280|ref|YP_006922651.1| - 0.41 10.0 5.4 0.94 8.8 3.6 1.7 1 1 1 2 2 2 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus zf-C3HC4 PF00097.20 gi|410670280|ref|YP_006922651.1| - 0.55 9.9 9.0 0.62 9.7 4.0 2.3 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) C1_1 PF00130.17 gi|410670280|ref|YP_006922651.1| - 0.66 9.7 10.5 1.8 8.3 4.6 2.8 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C3HC4_4 PF15227.1 gi|410670280|ref|YP_006922651.1| - 0.92 9.4 9.2 0.31 10.9 3.9 2.0 2 0 0 2 2 2 0 zinc finger of C3HC4-type, RING PHD PF00628.24 gi|410670280|ref|YP_006922651.1| - 2 8.2 10.0 2.7 7.7 4.4 2.2 2 0 0 2 2 2 0 PHD-finger zf-AN1 PF01428.11 gi|410670280|ref|YP_006922651.1| - 2 8.3 12.1 3.3 7.6 2.8 3.2 2 1 1 3 3 3 0 AN1-like Zinc finger UPF0547 PF10571.4 gi|410670280|ref|YP_006922651.1| - 2.2 8.0 14.8 6.3 6.5 0.1 3.5 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-4CXXC_R1 PF10497.4 gi|410670280|ref|YP_006922651.1| - 2.8 8.1 9.1 72 3.5 6.5 2.1 1 1 1 2 2 2 0 Zinc-finger domain of monoamine-oxidase A repressor R1 OrfB_Zn_ribbon PF07282.6 gi|410670280|ref|YP_006922651.1| - 2.9 7.5 13.3 8.4 6.1 0.4 3.3 1 1 2 3 3 3 0 Putative transposase DNA-binding domain CK_II_beta PF01214.13 gi|410670280|ref|YP_006922651.1| - 3.3 7.1 8.5 5.2 6.5 5.9 1.4 1 1 0 1 1 1 0 Casein kinase II regulatory subunit zf-BED PF02892.10 gi|410670280|ref|YP_006922651.1| - 4.8 7.0 10.2 1 9.1 0.2 3.1 3 0 0 3 3 3 0 BED zinc finger Prok-RING_1 PF14446.1 gi|410670280|ref|YP_006922651.1| - 5.2 6.8 13.7 19 5.0 0.1 3.2 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 Zn_ribbon_2 PF12674.2 gi|410670280|ref|YP_006922651.1| - 5.2 7.4 13.7 2.8 8.3 3.8 2.4 1 1 1 2 2 2 0 Putative zinc ribbon domain Proteasome PF00227.21 gi|410670281|ref|YP_006922652.1| - 1.5e-05 24.4 0.1 4.4e-05 22.8 0.0 1.9 2 0 0 2 2 2 1 Proteasome subunit Guanylate_cyc PF00211.15 gi|410670281|ref|YP_006922652.1| - 0.013 14.9 0.1 1.5 8.1 0.0 2.2 2 0 0 2 2 2 0 Adenylate and Guanylate cyclase catalytic domain DDE_3 PF13358.1 gi|410670282|ref|YP_006922653.1| - 2.8e-23 82.2 0.1 3.9e-23 81.8 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|410670282|ref|YP_006922653.1| - 1.2e-09 38.2 0.0 2.1e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|410670282|ref|YP_006922653.1| - 9.1e-09 34.7 0.2 1.1e-08 34.5 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|410670282|ref|YP_006922653.1| - 0.009 14.7 0.0 0.01 14.6 0.0 1.2 1 0 0 1 1 1 1 Rhodopirellula transposase DDE domain DUF3800 PF12686.2 gi|410670282|ref|YP_006922653.1| - 0.047 13.3 0.0 0.057 13.0 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) Ribosomal_S2 PF00318.15 gi|410670282|ref|YP_006922653.1| - 0.05 12.8 3.3 0.58 9.3 2.3 2.0 1 1 0 1 1 1 0 Ribosomal protein S2 HTH_29 PF13551.1 gi|410670283|ref|YP_006922654.1| - 2.1e-16 60.0 0.0 3.3e-16 59.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410670283|ref|YP_006922654.1| - 2.7e-10 40.9 0.4 5.5e-10 39.9 0.1 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|410670283|ref|YP_006922654.1| - 5.9e-09 35.3 0.4 1.2e-08 34.3 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|410670283|ref|YP_006922654.1| - 1.4e-06 27.7 0.1 5.3e-06 25.8 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|410670283|ref|YP_006922654.1| - 2.6e-05 24.1 0.0 6.3e-05 22.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_21 PF13276.1 gi|410670283|ref|YP_006922654.1| - 0.031 14.2 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 HTH-like domain OTCace PF00185.19 gi|410670285|ref|YP_006922656.1| - 6.3e-58 195.1 0.0 1.1e-57 194.3 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|410670285|ref|YP_006922656.1| - 1.4e-52 177.0 0.0 2.4e-52 176.3 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GARS_A PF01071.14 gi|410670286|ref|YP_006922657.1| - 1e-52 178.5 0.1 7e-52 175.8 0.0 2.2 3 0 0 3 3 3 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|410670286|ref|YP_006922657.1| - 2.8e-30 104.7 0.8 5.9e-30 103.6 0.4 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|410670286|ref|YP_006922657.1| - 1.2e-19 70.2 0.3 4.1e-19 68.5 0.2 1.9 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|410670286|ref|YP_006922657.1| - 2e-13 50.4 0.0 8.4e-13 48.4 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|410670286|ref|YP_006922657.1| - 2.6e-07 29.7 0.0 4.2e-06 25.7 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|410670286|ref|YP_006922657.1| - 0.0014 18.5 0.0 0.0023 17.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GFO_IDH_MocA PF01408.17 gi|410670286|ref|YP_006922657.1| - 0.072 13.6 0.2 0.24 11.9 0.0 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Pribosyltran PF00156.22 gi|410670287|ref|YP_006922658.1| - 3.9e-11 42.7 1.6 1.3e-10 41.0 1.1 1.7 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|410670287|ref|YP_006922658.1| - 0.1 11.7 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase DUF46 PF01864.12 gi|410670288|ref|YP_006922659.1| - 8.1e-55 185.3 4.8 9.1e-55 185.2 3.4 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|410670288|ref|YP_006922659.1| - 8.4e-10 38.7 3.8 8.4e-10 38.7 2.7 2.0 1 1 1 2 2 2 1 Cytidylyltransferase family DUF1049 PF06305.6 gi|410670288|ref|YP_006922659.1| - 0.016 14.6 0.5 0.016 14.6 0.4 3.1 3 1 1 4 4 4 0 Protein of unknown function (DUF1049) FA_desaturase PF00487.19 gi|410670288|ref|YP_006922659.1| - 1.5 8.2 8.0 0.76 9.1 3.8 1.6 1 1 1 2 2 2 0 Fatty acid desaturase DUF2273 PF10031.4 gi|410670288|ref|YP_006922659.1| - 3.8 7.1 7.9 11 5.7 0.5 3.3 3 0 0 3 3 3 0 Small integral membrane protein (DUF2273) ResB PF05140.9 gi|410670289|ref|YP_006922660.1| - 0.016 13.8 8.7 0.04 12.4 0.5 3.0 2 1 1 3 3 3 0 ResB-like family Cytochrom_C_asm PF01578.15 gi|410670290|ref|YP_006922661.1| - 3.5e-36 124.7 20.7 3.5e-36 124.7 14.3 2.3 2 1 0 2 2 2 1 Cytochrome C assembly protein Exonuc_VII_S PF02609.11 gi|410670291|ref|YP_006922662.1| - 4.5e-20 71.1 6.0 6.3e-20 70.6 4.2 1.2 1 0 0 1 1 1 1 Exonuclease VII small subunit FCH PF00611.18 gi|410670291|ref|YP_006922662.1| - 0.052 13.7 0.6 0.076 13.2 0.4 1.2 1 0 0 1 1 1 0 Fes/CIP4, and EFC/F-BAR homology domain Exonuc_VII_L PF02601.10 gi|410670292|ref|YP_006922663.1| - 3.4e-76 256.4 0.0 5.7e-69 232.7 0.0 2.1 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.1 gi|410670292|ref|YP_006922663.1| - 1.8e-31 107.8 0.0 3.6e-31 106.9 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|410670292|ref|YP_006922663.1| - 1.3e-06 28.1 0.0 8.9e-06 25.4 0.0 2.1 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DASH_Dad1 PF08649.5 gi|410670292|ref|YP_006922663.1| - 0.04 13.6 0.1 0.25 11.0 0.0 2.1 2 0 0 2 2 2 0 DASH complex subunit Dad1 Antitoxin-MazE PF04014.13 gi|410670294|ref|YP_006922665.1| - 0.00076 19.1 0.0 0.00092 18.8 0.0 1.3 1 1 0 1 1 1 1 Antidote-toxin recognition MazE Botulinum_HA-17 PF05588.6 gi|410670296|ref|YP_006922667.1| - 0.12 12.2 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Clostridium botulinum HA-17 protein Sm_multidrug_ex PF06695.6 gi|410670297|ref|YP_006922668.1| - 0.00015 21.9 0.6 0.00029 20.9 0.4 1.5 1 0 0 1 1 1 1 Putative small multi-drug export protein N6_Mtase PF02384.11 gi|410670301|ref|YP_006922672.1| - 1.1e-67 228.3 0.0 1.5e-67 227.8 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|410670301|ref|YP_006922672.1| - 3e-15 56.8 0.0 2.6e-14 53.8 0.0 2.4 1 1 0 1 1 1 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|410670301|ref|YP_006922672.1| - 2.8e-10 40.2 0.0 5.5e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|410670301|ref|YP_006922672.1| - 9.7e-05 22.0 0.0 0.00031 20.3 0.0 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Eco57I PF07669.6 gi|410670301|ref|YP_006922672.1| - 0.00096 19.4 0.1 0.0059 16.9 0.0 2.2 2 0 0 2 2 2 1 Eco57I restriction-modification methylase MTS PF05175.9 gi|410670301|ref|YP_006922672.1| - 0.089 12.1 0.0 1.6 8.0 0.0 2.4 2 1 0 2 2 2 0 Methyltransferase small domain Methylase_S PF01420.14 gi|410670302|ref|YP_006922673.1| - 2e-36 125.5 6.7 6.3e-22 78.3 0.6 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain ResIII PF04851.10 gi|410670303|ref|YP_006922674.1| - 1.6e-41 142.1 0.2 4.6e-41 140.6 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit EcoEI_R_C PF08463.5 gi|410670303|ref|YP_006922674.1| - 4.7e-36 124.1 1.2 1.7e-35 122.3 0.8 2.0 1 0 0 1 1 1 1 EcoEI R protein C-terminal DEAD PF00270.24 gi|410670303|ref|YP_006922674.1| - 7e-10 38.6 0.0 3.8e-09 36.2 0.0 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase HSDR_N PF04313.9 gi|410670303|ref|YP_006922674.1| - 1e-08 35.2 0.4 9.7e-07 28.7 0.0 3.5 2 1 1 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) FtsK_SpoIIIE PF01580.13 gi|410670303|ref|YP_006922674.1| - 7.5e-05 22.2 0.1 0.044 13.2 0.0 2.6 2 0 0 2 2 2 2 FtsK/SpoIIIE family SNF2_N PF00176.18 gi|410670303|ref|YP_006922674.1| - 0.00019 20.3 0.0 0.00049 18.9 0.0 1.6 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_19 PF13245.1 gi|410670303|ref|YP_006922674.1| - 0.027 14.1 0.0 0.067 12.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain TFIIH_BTF_p62_N PF08567.6 gi|410670303|ref|YP_006922674.1| - 0.083 12.5 0.0 0.22 11.1 0.0 1.7 1 0 0 1 1 1 0 TFIIH p62 subunit, N-terminal domain MARVEL PF01284.18 gi|410670304|ref|YP_006922675.1| - 0.069 12.9 5.6 0.12 12.2 3.9 1.5 1 1 0 1 1 1 0 Membrane-associating domain DUF4064 PF13273.1 gi|410670304|ref|YP_006922675.1| - 0.13 12.3 7.8 0.23 11.5 5.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DUF2207 PF09972.4 gi|410670304|ref|YP_006922675.1| - 0.35 9.4 5.2 0.44 9.0 3.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2721 PF11026.3 gi|410670304|ref|YP_006922675.1| - 0.67 9.5 5.8 1 9.0 4.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) DUF1469 PF07332.6 gi|410670304|ref|YP_006922675.1| - 2.8 7.6 8.8 0.31 10.7 3.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) Methyltransf_14 PF08484.6 gi|410670305|ref|YP_006922676.1| - 0.046 13.2 0.1 0.062 12.8 0.0 1.2 1 0 0 1 1 1 0 C-methyltransferase C-terminal domain TFIIE_alpha PF02002.12 gi|410670306|ref|YP_006922677.1| - 9.3e-05 21.8 5.1 0.00096 18.6 0.8 3.4 2 2 0 2 2 2 1 TFIIE alpha subunit Penicillinase_R PF03965.11 gi|410670306|ref|YP_006922677.1| - 0.029 14.4 0.3 0.96 9.5 0.0 2.7 2 0 0 2 2 2 0 Penicillinase repressor DUF2122 PF09895.4 gi|410670306|ref|YP_006922677.1| - 0.12 12.5 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 RecB-family nuclease (DUF2122) TFIIB PF00382.14 gi|410670307|ref|YP_006922678.1| - 0.0025 17.5 0.0 0.0029 17.3 0.0 1.0 1 0 0 1 1 1 1 Transcription factor TFIIB repeat Toxin_65 PF15543.1 gi|410670308|ref|YP_006922679.1| - 0.12 11.9 0.1 0.12 11.9 0.0 1.0 1 0 0 1 1 1 0 Putative toxin 65 Phage_integrase PF00589.17 gi|410670309|ref|YP_006922680.1| - 4.7e-08 32.9 0.0 1.1e-07 31.6 0.0 1.7 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|410670309|ref|YP_006922680.1| - 0.0012 19.1 0.3 0.0074 16.5 0.1 2.5 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain DUF677 PF05055.7 gi|410670309|ref|YP_006922680.1| - 0.022 13.4 1.3 0.038 12.6 0.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF677) DUF465 PF04325.8 gi|410670309|ref|YP_006922680.1| - 0.048 13.3 1.2 0.14 11.8 0.8 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF465) T2SE PF00437.15 gi|410670310|ref|YP_006922681.1| - 1.1e-25 90.1 0.0 1.5e-25 89.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_24 PF13479.1 gi|410670310|ref|YP_006922681.1| - 0.00017 21.2 0.3 0.15 11.6 0.1 2.2 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|410670310|ref|YP_006922681.1| - 0.004 16.2 0.1 0.007 15.4 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin KaiC PF06745.8 gi|410670310|ref|YP_006922681.1| - 0.0064 15.6 0.0 0.013 14.6 0.0 1.5 1 0 0 1 1 1 1 KaiC AAA_16 PF13191.1 gi|410670310|ref|YP_006922681.1| - 0.015 15.2 0.0 0.16 11.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain Miro PF08477.8 gi|410670310|ref|YP_006922681.1| - 0.025 15.0 0.0 0.051 14.0 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein Arch_ATPase PF01637.13 gi|410670310|ref|YP_006922681.1| - 0.031 13.9 0.0 2.9 7.5 0.0 2.2 2 0 0 2 2 2 0 Archaeal ATPase cobW PF02492.14 gi|410670310|ref|YP_006922681.1| - 0.05 13.0 0.0 0.11 11.8 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.1 gi|410670310|ref|YP_006922681.1| - 0.058 12.9 0.1 0.13 11.7 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|410670310|ref|YP_006922681.1| - 0.059 12.8 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_19 PF13245.1 gi|410670310|ref|YP_006922681.1| - 0.1 12.3 0.1 0.47 10.2 0.0 2.1 3 0 0 3 3 2 0 Part of AAA domain AAA_22 PF13401.1 gi|410670310|ref|YP_006922681.1| - 0.14 12.3 0.0 1.3 9.1 0.0 2.2 2 1 1 3 3 3 0 AAA domain AAA_25 PF13481.1 gi|410670310|ref|YP_006922681.1| - 0.14 11.5 0.1 0.75 9.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|410670310|ref|YP_006922681.1| - 0.14 11.5 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 DEAD/DEAH box helicase Flavin_Reduct PF01613.13 gi|410670312|ref|YP_006922683.1| - 2.9e-26 92.1 0.0 3.7e-26 91.8 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain TFR_dimer PF04253.10 gi|410670312|ref|YP_006922683.1| - 0.037 13.5 0.0 0.063 12.8 0.0 1.3 1 0 0 1 1 1 0 Transferrin receptor-like dimerisation domain Radical_SAM PF04055.16 gi|410670313|ref|YP_006922684.1| - 2.5e-09 37.5 0.0 4.7e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|410670313|ref|YP_006922684.1| - 2.1e-05 24.6 0.0 5.5e-05 23.3 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|410670313|ref|YP_006922684.1| - 2.8e-05 24.1 0.0 6.1e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2551 PF10826.3 gi|410670314|ref|YP_006922685.1| - 5.6e-34 115.9 0.5 6.9e-34 115.6 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Prenyltransf PF01255.14 gi|410670315|ref|YP_006922686.1| - 3.6e-72 242.1 0.0 4.6e-72 241.7 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF3077 PF11275.3 gi|410670315|ref|YP_006922686.1| - 0.11 12.4 0.0 0.3 11.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3077) RNA_pol_A_bac PF01000.21 gi|410670316|ref|YP_006922687.1| - 8.9e-24 83.8 0.0 1.6e-23 83.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|410670316|ref|YP_006922687.1| - 8.1e-12 44.0 0.0 9.9e-12 43.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.22 gi|410670316|ref|YP_006922687.1| - 1.4e-09 37.1 14.0 3.2e-06 26.4 2.6 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|410670316|ref|YP_006922687.1| - 8.1e-07 28.7 9.3 8.1e-07 28.7 6.5 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410670316|ref|YP_006922687.1| - 3.6e-06 27.1 9.8 3.6e-06 27.1 6.8 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410670316|ref|YP_006922687.1| - 3.6e-06 27.2 18.8 6.3e-06 26.4 7.3 2.5 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|410670316|ref|YP_006922687.1| - 6.2e-06 26.1 10.5 0.023 14.6 4.5 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410670316|ref|YP_006922687.1| - 0.0002 21.6 9.1 0.004 17.4 0.4 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410670316|ref|YP_006922687.1| - 0.00025 20.7 2.6 0.00025 20.7 1.8 2.9 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|410670316|ref|YP_006922687.1| - 0.0016 18.2 3.5 0.0016 18.2 2.4 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|410670316|ref|YP_006922687.1| - 0.0027 18.4 1.9 0.0027 18.4 1.3 2.6 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|410670316|ref|YP_006922687.1| - 0.006 16.4 16.7 0.034 14.0 1.4 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|410670316|ref|YP_006922687.1| - 0.0077 16.7 10.1 0.3 11.6 1.8 2.7 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|410670316|ref|YP_006922687.1| - 0.026 14.8 4.4 0.026 14.8 3.0 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|410670316|ref|YP_006922687.1| - 0.031 14.8 5.3 0.031 14.8 3.7 3.5 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|410670316|ref|YP_006922687.1| - 0.1 13.0 12.0 0.089 13.2 2.5 2.7 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|410670316|ref|YP_006922687.1| - 2.7 8.4 11.4 1.8 8.9 0.8 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain Ribosomal_S11 PF00411.14 gi|410670317|ref|YP_006922688.1| - 8.3e-43 145.0 0.7 9.8e-43 144.8 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.5 gi|410670317|ref|YP_006922688.1| - 0.013 15.0 0.2 0.025 14.0 0.1 1.5 1 1 1 2 2 2 0 Pilus biogenesis CpaD protein (pilus_cpaD) S4 PF01479.20 gi|410670318|ref|YP_006922689.1| - 3.5e-16 58.3 0.3 8e-16 57.2 0.0 1.8 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|410670318|ref|YP_006922689.1| - 0.029 14.7 0.6 0.075 13.4 0.4 1.7 1 0 0 1 1 1 0 Ribosomal protein S4/S9 N-terminal domain DUF910 PF06014.6 gi|410670318|ref|YP_006922689.1| - 0.089 12.7 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF910) Ribosomal_S13 PF00416.17 gi|410670319|ref|YP_006922690.1| - 1.1e-29 103.0 0.1 1.3e-29 102.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 NPV_P10 PF05531.7 gi|410670319|ref|YP_006922690.1| - 0.12 12.5 0.0 22 5.4 0.0 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein MFS_1 PF07690.11 gi|410670320|ref|YP_006922691.1| - 1.8e-16 59.7 49.8 4.3e-11 42.1 28.6 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|410670320|ref|YP_006922691.1| - 8.6e-07 27.8 32.8 1.9e-05 23.4 7.9 2.8 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|410670320|ref|YP_006922691.1| - 0.0079 15.9 9.3 0.11 12.2 0.2 4.0 4 0 0 4 4 4 1 MFS_1 like family TraT PF05818.7 gi|410670320|ref|YP_006922691.1| - 0.69 9.2 2.1 6.1 6.2 0.0 2.2 2 0 0 2 2 2 0 Enterobacterial TraT complement resistance protein DUF4082 PF13313.1 gi|410670321|ref|YP_006922692.1| - 0.11 11.9 0.1 0.2 11.1 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4082) CarboxypepD_reg PF13620.1 gi|410670322|ref|YP_006922693.1| - 2.9e-07 30.4 0.0 8.6e-07 28.9 0.0 1.8 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|410670322|ref|YP_006922693.1| - 0.00013 21.9 0.0 0.00041 20.3 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) Acetyltransf_7 PF13508.1 gi|410670323|ref|YP_006922694.1| - 2.2e-17 62.9 0.1 2.8e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|410670323|ref|YP_006922694.1| - 1.2e-11 44.4 0.0 1.6e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|410670323|ref|YP_006922694.1| - 4.4e-08 33.2 0.0 5.3e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|410670323|ref|YP_006922694.1| - 1e-05 25.4 0.0 4.7e-05 23.2 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|410670323|ref|YP_006922694.1| - 0.0068 16.1 0.0 0.016 14.9 0.0 1.8 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|410670323|ref|YP_006922694.1| - 0.0071 16.5 0.0 0.0083 16.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PUA PF01472.15 gi|410670323|ref|YP_006922694.1| - 0.053 13.2 0.0 0.082 12.6 0.0 1.4 1 0 0 1 1 1 0 PUA domain Acetyltransf_4 PF13420.1 gi|410670323|ref|YP_006922694.1| - 0.055 13.4 0.0 0.075 12.9 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|410670323|ref|YP_006922694.1| - 0.089 12.6 0.0 0.14 12.0 0.0 1.4 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase Transketolase_C PF02780.15 gi|410670323|ref|YP_006922694.1| - 0.094 12.6 0.0 12 5.7 0.0 2.1 1 1 1 2 2 2 0 Transketolase, C-terminal domain TruB_N PF01509.13 gi|410670324|ref|YP_006922695.1| - 2.1e-22 79.8 0.1 3.4e-13 49.9 0.0 3.1 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|410670324|ref|YP_006922695.1| - 6.4e-19 67.6 0.0 1.3e-18 66.6 0.0 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|410670324|ref|YP_006922695.1| - 1.3e-15 56.8 0.1 2.8e-15 55.8 0.1 1.6 1 0 0 1 1 1 1 PUA domain Cytidylate_kin2 PF13189.1 gi|410670325|ref|YP_006922696.1| - 3.5e-19 69.3 1.0 2.8e-18 66.4 0.7 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|410670325|ref|YP_006922696.1| - 2.3e-13 50.5 0.1 3.1e-13 50.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|410670325|ref|YP_006922696.1| - 4.5e-11 43.6 0.1 9e-11 42.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|410670325|ref|YP_006922696.1| - 0.00015 21.1 0.1 0.0002 20.8 0.1 1.2 1 0 0 1 1 1 1 Cytidylate kinase SKI PF01202.17 gi|410670325|ref|YP_006922696.1| - 0.0002 21.2 0.7 0.00054 19.8 0.5 1.6 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.1 gi|410670325|ref|YP_006922696.1| - 0.00059 19.8 0.1 0.0012 18.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|410670325|ref|YP_006922696.1| - 0.00078 19.3 0.5 0.0085 15.9 0.4 2.0 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|410670325|ref|YP_006922696.1| - 0.00082 19.2 0.1 0.0017 18.2 0.0 1.6 1 1 1 2 2 2 1 Adenylate kinase CoaE PF01121.15 gi|410670325|ref|YP_006922696.1| - 0.0023 17.3 0.3 0.6 9.4 0.0 2.1 2 0 0 2 2 2 2 Dephospho-CoA kinase TetR_C_4 PF08359.6 gi|410670325|ref|YP_006922696.1| - 0.073 13.0 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 YsiA-like protein, C-terminal region DUF106 PF01956.11 gi|410670326|ref|YP_006922697.1| - 3.1e-42 143.9 8.6 3.9e-42 143.6 5.9 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 DUF624 PF04854.9 gi|410670326|ref|YP_006922697.1| - 0.025 14.4 6.4 0.71 9.7 0.2 3.6 3 1 1 4 4 4 0 Protein of unknown function, DUF624 60KD_IMP PF02096.15 gi|410670326|ref|YP_006922697.1| - 0.045 13.3 12.8 0.16 11.6 8.4 1.9 1 1 1 2 2 2 0 60Kd inner membrane protein cwf18 PF08315.7 gi|410670326|ref|YP_006922697.1| - 0.18 12.2 0.3 0.18 12.2 0.2 1.8 1 1 1 2 2 2 0 cwf18 pre-mRNA splicing factor ADK PF00406.17 gi|410670327|ref|YP_006922698.1| - 7.7e-59 197.8 0.0 9.1e-59 197.6 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|410670327|ref|YP_006922698.1| - 6.8e-18 64.0 5.0 1.2e-17 63.2 2.2 2.1 2 0 0 2 2 2 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|410670327|ref|YP_006922698.1| - 1.1e-10 42.3 0.3 1.7e-10 41.7 0.2 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|410670327|ref|YP_006922698.1| - 5.3e-07 29.6 0.0 1.3e-06 28.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|410670327|ref|YP_006922698.1| - 5.8e-06 26.6 0.1 1.3e-05 25.5 0.1 1.5 1 1 0 1 1 1 1 AAA domain TF_Zn_Ribbon PF08271.7 gi|410670327|ref|YP_006922698.1| - 7.4e-05 21.9 2.2 0.00014 21.0 1.5 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding AAA_28 PF13521.1 gi|410670327|ref|YP_006922698.1| - 0.0019 18.1 0.0 0.01 15.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain DZR PF12773.2 gi|410670327|ref|YP_006922698.1| - 0.0058 16.4 0.6 0.01 15.6 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon Ribosomal_S27e PF01667.12 gi|410670327|ref|YP_006922698.1| - 0.0091 15.5 0.5 0.016 14.7 0.4 1.3 1 0 0 1 1 1 1 Ribosomal protein S27 zf-IS66 PF13005.2 gi|410670327|ref|YP_006922698.1| - 0.013 15.4 0.7 4.8 7.2 0.0 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 AAA PF00004.24 gi|410670327|ref|YP_006922698.1| - 0.014 15.6 0.0 0.025 14.8 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) OrfB_Zn_ribbon PF07282.6 gi|410670327|ref|YP_006922698.1| - 0.024 14.2 0.6 0.051 13.2 0.4 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain GFA PF04828.9 gi|410670327|ref|YP_006922698.1| - 0.052 13.4 1.0 0.5 10.3 0.2 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Zn_Tnp_IS1595 PF12760.2 gi|410670327|ref|YP_006922698.1| - 0.064 13.0 1.8 0.11 12.2 1.3 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|410670327|ref|YP_006922698.1| - 0.07 12.6 0.9 4.3 6.9 0.0 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain RNHCP PF12647.2 gi|410670327|ref|YP_006922698.1| - 0.074 12.8 0.1 0.14 11.9 0.1 1.5 1 0 0 1 1 1 0 RNHCP domain SKI PF01202.17 gi|410670327|ref|YP_006922698.1| - 0.081 12.7 0.1 4.4 7.1 0.0 2.3 2 1 0 2 2 2 0 Shikimate kinase Zeta_toxin PF06414.7 gi|410670327|ref|YP_006922698.1| - 0.085 11.9 0.1 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DUF1451 PF07295.6 gi|410670327|ref|YP_006922698.1| - 0.098 12.4 0.6 0.15 11.8 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) zf-ribbon_3 PF13248.1 gi|410670327|ref|YP_006922698.1| - 0.1 11.8 5.5 1.1 8.5 4.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain AAA_24 PF13479.1 gi|410670327|ref|YP_006922698.1| - 0.11 12.1 0.3 0.18 11.3 0.2 1.3 1 0 0 1 1 1 0 AAA domain Cytidylate_kin2 PF13189.1 gi|410670327|ref|YP_006922698.1| - 0.12 12.2 0.0 0.89 9.4 0.0 2.0 2 0 0 2 2 2 0 Cytidylate kinase-like family Thymidylate_kin PF02223.12 gi|410670327|ref|YP_006922698.1| - 0.12 11.6 0.0 0.41 9.9 0.0 1.7 2 0 0 2 2 2 0 Thymidylate kinase TerY-C PF15616.1 gi|410670327|ref|YP_006922698.1| - 0.13 12.2 1.2 0.67 9.8 0.8 1.9 1 1 0 1 1 1 0 TerY-C metal binding domain zf-ISL3 PF14690.1 gi|410670327|ref|YP_006922698.1| - 0.13 12.3 2.3 6.5 6.8 0.2 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Prok-RING_1 PF14446.1 gi|410670327|ref|YP_006922698.1| - 0.15 11.7 3.5 5.2 6.8 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 HypA PF01155.14 gi|410670327|ref|YP_006922698.1| - 0.17 11.5 0.2 0.27 10.9 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|410670327|ref|YP_006922698.1| - 0.38 10.7 1.6 1 9.3 1.1 1.8 1 1 0 1 1 1 0 Zinc ribbon domain RRN7 PF11781.3 gi|410670327|ref|YP_006922698.1| - 0.63 9.5 3.3 0.9 9.0 0.2 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zinc_ribbon_2 PF13240.1 gi|410670327|ref|YP_006922698.1| - 1.3 8.6 5.7 8.3 6.0 3.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain SecY PF00344.15 gi|410670328|ref|YP_006922699.1| - 4.4e-96 321.8 26.4 5.3e-96 321.5 18.3 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|410670328|ref|YP_006922699.1| - 9.2e-12 44.2 2.4 1.4e-11 43.6 0.5 2.3 2 0 0 2 2 2 1 Plug domain of Sec61p Ribosomal_L18e PF00828.14 gi|410670329|ref|YP_006922700.1| - 2.5e-25 89.3 0.1 3e-25 89.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 DUF386 PF04074.7 gi|410670329|ref|YP_006922700.1| - 0.15 11.5 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF386) Ribosomal_S5 PF00333.15 gi|410670331|ref|YP_006922702.1| - 2.3e-27 94.5 2.3 4.8e-27 93.4 1.6 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|410670331|ref|YP_006922702.1| - 8.9e-24 82.5 0.5 1.6e-23 81.7 0.4 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|410670332|ref|YP_006922703.1| - 1.7e-23 83.0 0.0 2.1e-23 82.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|410670332|ref|YP_006922703.1| - 0.14 12.7 0.1 0.39 11.2 0.0 1.6 1 1 1 2 2 2 0 Ribosomal L18 C-terminal region Ribosomal_L19e PF01280.15 gi|410670333|ref|YP_006922704.1| - 1e-56 190.8 10.5 1.2e-56 190.6 7.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e DUF573 PF04504.9 gi|410670333|ref|YP_006922704.1| - 0.81 10.0 5.2 0.24 11.6 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function, DUF573 Ribosomal_L32e PF01655.13 gi|410670334|ref|YP_006922705.1| - 3.6e-38 130.0 0.1 4.4e-38 129.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.18 gi|410670335|ref|YP_006922706.1| - 1.4e-25 89.5 5.9 7.8e-14 51.9 0.4 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.14 gi|410670336|ref|YP_006922707.1| - 8.6e-25 87.0 0.0 1.1e-24 86.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|410670337|ref|YP_006922708.1| - 8e-20 69.9 1.6 8.5e-20 69.8 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.1 gi|410670337|ref|YP_006922708.1| - 0.0016 18.1 0.3 0.0018 17.9 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) zf-P11 PF03854.9 gi|410670337|ref|YP_006922708.1| - 0.002 17.5 1.2 0.0024 17.3 0.9 1.1 1 0 0 1 1 1 1 P-11 zinc finger DUF2318 PF10080.4 gi|410670337|ref|YP_006922708.1| - 0.023 14.4 0.3 0.023 14.4 0.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Ribosomal_L37ae PF01780.14 gi|410670337|ref|YP_006922708.1| - 0.06 13.2 0.5 0.064 13.1 0.4 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family DUF1451 PF07295.6 gi|410670337|ref|YP_006922708.1| - 0.062 13.0 0.7 0.069 12.9 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) zf-UBR PF02207.15 gi|410670337|ref|YP_006922708.1| - 0.084 12.5 0.8 0.1 12.3 0.6 1.1 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) OrfB_Zn_ribbon PF07282.6 gi|410670337|ref|YP_006922708.1| - 0.092 12.4 0.9 0.091 12.4 0.6 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|410670337|ref|YP_006922708.1| - 0.15 11.9 1.3 0.23 11.2 0.9 1.4 1 1 0 1 1 1 0 Double zinc ribbon Sgf11 PF08209.6 gi|410670337|ref|YP_006922708.1| - 0.36 10.1 3.8 2.9 7.2 0.0 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-C2HC_2 PF13913.1 gi|410670337|ref|YP_006922708.1| - 1.7 8.3 7.4 9.1 6.0 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Ribosomal_L5_C PF00673.16 gi|410670338|ref|YP_006922709.1| - 5.3e-27 93.3 0.0 7.7e-27 92.8 0.0 1.2 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|410670338|ref|YP_006922709.1| - 1.5e-14 53.5 0.0 2.6e-14 52.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 NgoMIV_restric PF09015.5 gi|410670338|ref|YP_006922709.1| - 0.097 11.6 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 NgoMIV restriction enzyme Ribosomal_S4e PF00900.15 gi|410670339|ref|YP_006922710.1| - 4.3e-26 90.3 0.6 7.7e-26 89.5 0.4 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|410670339|ref|YP_006922710.1| - 1.1e-12 47.5 1.7 1.7e-12 46.9 1.2 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|410670339|ref|YP_006922710.1| - 1.6e-06 27.4 1.8 8e-06 25.1 0.1 2.6 2 0 0 2 2 2 1 S4 domain KOW PF00467.24 gi|410670339|ref|YP_006922710.1| - 0.00027 20.5 1.2 0.00062 19.3 0.0 2.3 2 0 0 2 2 2 1 KOW motif S4_2 PF13275.1 gi|410670339|ref|YP_006922710.1| - 0.017 14.6 0.1 0.07 12.7 0.0 2.0 2 0 0 2 2 2 0 S4 domain KOW PF00467.24 gi|410670340|ref|YP_006922711.1| - 5.2e-08 32.3 1.5 1.1e-07 31.2 1.0 1.6 1 0 0 1 1 1 1 KOW motif Ribosomal_L14 PF00238.14 gi|410670341|ref|YP_006922712.1| - 4e-37 126.6 0.3 4.4e-37 126.5 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|410670342|ref|YP_006922713.1| - 1.3e-28 98.8 3.7 1.6e-28 98.5 2.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Cementoin PF10511.4 gi|410670342|ref|YP_006922713.1| - 0.12 12.0 0.4 0.22 11.3 0.3 1.4 1 0 0 1 1 1 0 Trappin protein transglutaminase binding domain Capsid_NCLDV PF04451.7 gi|410670342|ref|YP_006922713.1| - 0.14 11.1 0.0 0.17 10.8 0.0 1.1 1 0 0 1 1 1 0 Large eukaryotic DNA virus major capsid protein zf-C3H1 PF10650.4 gi|410670342|ref|YP_006922713.1| - 0.32 10.5 1.9 0.61 9.6 1.3 1.5 1 0 0 1 1 1 0 Putative zinc-finger domain UPF0086 PF01868.11 gi|410670343|ref|YP_006922714.1| - 6.6e-30 102.5 0.2 7.7e-30 102.3 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Cbl_N3 PF02762.9 gi|410670343|ref|YP_006922714.1| - 0.038 13.6 0.0 0.05 13.2 0.0 1.2 1 0 0 1 1 1 0 CBL proto-oncogene N-terminus, SH2-like domain Myosin_N PF02736.14 gi|410670343|ref|YP_006922714.1| - 0.044 13.4 0.6 0.076 12.7 0.4 1.4 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain Ribosomal_L29 PF00831.18 gi|410670344|ref|YP_006922715.1| - 4.6e-18 64.6 0.1 5.1e-18 64.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein DUF2740 PF10872.3 gi|410670344|ref|YP_006922715.1| - 0.068 12.8 0.0 0.11 12.1 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2740) MerR-DNA-bind PF09278.6 gi|410670344|ref|YP_006922715.1| - 0.13 12.6 2.4 9.9 6.6 0.2 2.7 2 1 1 3 3 3 0 MerR, DNA binding Toxin_36 PF10550.4 gi|410670344|ref|YP_006922715.1| - 0.15 13.2 0.2 0.15 13.2 0.1 2.0 2 0 0 2 2 2 0 Conantokin-G mollusc-toxin Ribosomal_S3_C PF00189.15 gi|410670345|ref|YP_006922716.1| - 1.2e-16 60.7 0.3 2.7e-16 59.5 0.2 1.6 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|410670345|ref|YP_006922716.1| - 4.7e-14 51.7 0.0 1e-13 50.5 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|410670345|ref|YP_006922716.1| - 0.0041 16.7 1.5 0.032 13.8 0.1 2.8 3 0 0 3 3 3 1 KH domain Glyco_hydro_44 PF12891.2 gi|410670345|ref|YP_006922716.1| - 0.02 14.4 0.4 0.032 13.7 0.3 1.3 1 0 0 1 1 1 0 Glycoside hydrolase family 44 KH_4 PF13083.1 gi|410670345|ref|YP_006922716.1| - 0.084 12.5 3.1 0.13 11.8 0.1 2.6 2 1 1 3 3 3 0 KH domain KH_3 PF13014.1 gi|410670345|ref|YP_006922716.1| - 0.42 10.3 2.4 1 9.1 0.1 2.6 4 0 0 4 4 4 0 KH domain Ribosomal_L22 PF00237.14 gi|410670346|ref|YP_006922717.1| - 1.3e-30 105.4 0.1 1.5e-30 105.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|410670347|ref|YP_006922718.1| - 1.1e-23 82.6 0.1 1.6e-23 82.0 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Stb3 PF10330.4 gi|410670347|ref|YP_006922718.1| - 0.06 13.0 0.0 0.085 12.5 0.0 1.3 1 0 0 1 1 1 0 Putative Sin3 binding protein Ribosomal_L2_C PF03947.13 gi|410670348|ref|YP_006922719.1| - 3e-45 153.1 0.6 4.2e-45 152.7 0.4 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|410670348|ref|YP_006922719.1| - 5e-15 55.2 0.0 1.2e-14 54.0 0.0 1.7 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|410670349|ref|YP_006922720.1| - 1.3e-14 53.8 0.4 3e-14 52.7 0.3 1.5 1 1 0 1 1 1 1 Ribosomal protein L23 Ribosomal_L4 PF00573.17 gi|410670350|ref|YP_006922721.1| - 1.1e-46 158.6 0.6 1.3e-46 158.4 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Herpes_capsid PF06112.6 gi|410670350|ref|YP_006922721.1| - 0.019 14.9 0.4 0.086 12.8 0.0 2.0 1 1 1 2 2 2 0 Gammaherpesvirus capsid protein Ribosomal_L3 PF00297.17 gi|410670351|ref|YP_006922722.1| - 1.4e-70 237.6 0.1 1.6e-70 237.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 POR PF01558.13 gi|410670352|ref|YP_006922723.1| - 8.1e-40 136.5 0.1 9.8e-40 136.2 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|410670353|ref|YP_006922724.1| - 1.7e-27 95.9 0.6 3.8e-27 94.7 0.4 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|410670353|ref|YP_006922724.1| - 3.7e-10 39.6 0.1 6.3e-10 38.9 0.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|410670353|ref|YP_006922724.1| - 1e-07 31.2 10.4 0.0015 18.0 0.8 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|410670353|ref|YP_006922724.1| - 8.5e-07 28.5 13.3 0.00014 21.5 2.2 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|410670353|ref|YP_006922724.1| - 2.8e-05 23.8 10.6 7.6e-05 22.4 7.4 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410670353|ref|YP_006922724.1| - 0.00011 21.9 11.9 0.00073 19.3 7.9 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain TPP_enzyme_N PF02776.13 gi|410670353|ref|YP_006922724.1| - 0.00016 21.2 0.3 0.0013 18.2 0.1 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_9 PF13187.1 gi|410670353|ref|YP_006922724.1| - 0.00021 21.5 11.4 0.00058 20.0 7.9 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410670353|ref|YP_006922724.1| - 0.0031 17.8 11.5 0.0031 17.8 7.9 2.3 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410670353|ref|YP_006922724.1| - 0.0053 16.9 12.3 0.45 10.9 2.0 3.1 2 0 0 2 2 2 2 4Fe-4S binding domain DXP_synthase_N PF13292.1 gi|410670353|ref|YP_006922724.1| - 0.023 13.6 0.2 2 7.2 0.0 2.2 1 1 1 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_16 PF13484.1 gi|410670353|ref|YP_006922724.1| - 0.046 14.4 6.6 1.4 9.7 0.7 2.7 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|410670353|ref|YP_006922724.1| - 2.1 8.4 16.7 0.61 10.1 8.6 2.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410670353|ref|YP_006922724.1| - 2.7 8.3 13.2 12 6.3 2.8 2.7 1 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410670353|ref|YP_006922724.1| - 4.1 7.4 19.7 0.049 13.5 1.7 3.3 3 0 0 3 3 2 0 4Fe-4S binding domain TauE PF01925.14 gi|410670354|ref|YP_006922725.1| - 1.1e-32 113.4 28.6 1.3e-32 113.2 19.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Aldedh PF00171.17 gi|410670356|ref|YP_006922727.1| - 8e-17 60.7 0.6 1.1e-13 50.3 0.0 2.2 2 0 0 2 2 2 2 Aldehyde dehydrogenase family EspA PF03433.8 gi|410670356|ref|YP_006922727.1| - 0.0073 15.7 0.6 0.4 10.0 0.0 2.3 2 0 0 2 2 2 2 EspA-like secreted protein AA_kinase PF00696.23 gi|410670357|ref|YP_006922728.1| - 1.1e-36 126.5 0.3 1.5e-36 126.1 0.2 1.2 1 0 0 1 1 1 1 Amino acid kinase family PUA PF01472.15 gi|410670357|ref|YP_006922728.1| - 1.3e-17 63.3 0.1 2.8e-17 62.2 0.1 1.6 1 0 0 1 1 1 1 PUA domain TrmB PF01978.14 gi|410670358|ref|YP_006922729.1| - 3.5e-22 77.8 0.1 6.6e-22 77.0 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|410670358|ref|YP_006922729.1| - 1.6e-05 24.0 0.0 0.00069 18.6 0.0 2.1 1 1 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.5 gi|410670358|ref|YP_006922729.1| - 5.6e-05 22.6 0.0 0.00011 21.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|410670358|ref|YP_006922729.1| - 6.9e-05 22.1 0.0 0.00012 21.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|410670358|ref|YP_006922729.1| - 9.5e-05 22.1 0.0 0.00021 20.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|410670358|ref|YP_006922729.1| - 0.00013 21.5 0.0 0.00023 20.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_CodY PF08222.6 gi|410670358|ref|YP_006922729.1| - 0.00031 20.0 0.0 0.0007 18.8 0.0 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_27 PF13463.1 gi|410670358|ref|YP_006922729.1| - 0.00066 19.9 0.2 0.17 12.2 0.0 2.6 3 0 0 3 3 2 1 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|410670358|ref|YP_006922729.1| - 0.0032 17.5 0.0 0.0063 16.5 0.0 1.5 1 0 0 1 1 1 1 Penicillinase repressor HTH_36 PF13730.1 gi|410670358|ref|YP_006922729.1| - 0.011 15.8 0.0 0.022 14.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|410670358|ref|YP_006922729.1| - 0.015 15.0 0.0 0.026 14.2 0.0 1.4 1 0 0 1 1 1 0 MarR family LexA_DNA_bind PF01726.11 gi|410670358|ref|YP_006922729.1| - 0.03 13.8 0.0 0.08 12.5 0.0 1.8 1 1 0 1 1 1 0 LexA DNA binding domain MotA_activ PF09114.5 gi|410670358|ref|YP_006922729.1| - 0.039 13.7 0.2 0.22 11.3 0.0 2.3 2 1 0 2 2 2 0 Transcription factor MotA, activation domain Rrf2 PF02082.15 gi|410670358|ref|YP_006922729.1| - 0.053 13.6 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR PF03551.9 gi|410670358|ref|YP_006922729.1| - 0.066 12.9 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_29 PF13551.1 gi|410670358|ref|YP_006922729.1| - 0.074 13.2 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Crp_2 PF13545.1 gi|410670358|ref|YP_006922729.1| - 0.1 12.4 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HemN_C PF06969.11 gi|410670358|ref|YP_006922729.1| - 0.1 12.6 0.0 0.29 11.2 0.0 1.8 1 1 0 1 1 1 0 HemN C-terminal domain TFIIE_alpha PF02002.12 gi|410670358|ref|YP_006922729.1| - 0.1 12.1 0.0 0.77 9.2 0.0 2.2 2 0 0 2 2 2 0 TFIIE alpha subunit Sulfolobus_pRN PF05584.6 gi|410670358|ref|YP_006922729.1| - 0.11 12.5 0.0 0.29 11.1 0.0 1.7 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_5 PF01022.15 gi|410670358|ref|YP_006922729.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FUR PF01475.14 gi|410670358|ref|YP_006922729.1| - 0.12 12.3 0.0 5.3 6.9 0.0 2.3 1 1 1 2 2 2 0 Ferric uptake regulator family NPCBM_assoc PF10633.4 gi|410670359|ref|YP_006922730.1| - 2.3e-11 43.5 0.0 0.00043 20.2 0.0 3.3 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|410670359|ref|YP_006922730.1| - 0.00081 19.4 0.1 0.024 14.6 0.0 2.4 2 0 0 2 2 2 1 CARDB DUF11 PF01345.13 gi|410670360|ref|YP_006922731.1| - 1.3e-07 31.5 3.0 0.00077 19.4 0.7 2.6 2 0 0 2 2 2 2 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|410670360|ref|YP_006922731.1| - 1.7e-06 27.9 0.8 0.0022 17.9 0.1 3.3 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|410670360|ref|YP_006922731.1| - 2.4e-05 24.3 0.2 0.00089 19.2 0.0 2.4 2 0 0 2 2 2 1 CARDB TRAP_beta PF05753.9 gi|410670360|ref|YP_006922731.1| - 0.00037 19.7 0.1 0.0012 18.0 0.1 1.9 1 1 0 1 1 1 1 Translocon-associated protein beta (TRAPB) MMPL PF03176.10 gi|410670361|ref|YP_006922732.1| - 1e-58 198.6 18.3 2.6e-31 108.5 3.6 2.1 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|410670361|ref|YP_006922732.1| - 4.7e-16 58.5 19.4 6.5e-10 38.6 0.2 2.7 3 0 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|410670361|ref|YP_006922732.1| - 1.7e-11 42.8 19.0 4.1e-08 31.6 4.3 2.2 2 0 0 2 2 2 2 Patched family ACR_tran PF00873.14 gi|410670361|ref|YP_006922732.1| - 4.7e-11 40.8 25.3 8.7e-07 26.7 8.2 2.1 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family SecD_SecF PF02355.11 gi|410670361|ref|YP_006922732.1| - 8.3e-10 38.1 10.4 8.3e-10 38.1 7.2 2.3 2 0 0 2 2 2 2 Protein export membrane protein tRNA_NucTransf2 PF09249.6 gi|410670362|ref|YP_006922733.1| - 8e-44 148.1 0.0 1.6e-43 147.2 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|410670362|ref|YP_006922733.1| - 1.1e-11 44.9 0.0 3.1e-11 43.4 0.0 1.8 1 0 0 1 1 1 1 Nucleotidyltransferase domain OGG_N PF07934.7 gi|410670363|ref|YP_006922734.1| - 5.3e-28 97.3 0.8 9.1e-28 96.5 0.5 1.4 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|410670363|ref|YP_006922734.1| - 6.8e-08 32.7 0.0 9.1e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|410670363|ref|YP_006922734.1| - 0.03 14.0 0.0 0.061 13.0 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif ADP_PFK_GK PF04587.10 gi|410670364|ref|YP_006922735.1| - 5.5e-72 242.3 0.0 6.2e-72 242.2 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region ADP_PFK_GK PF04587.10 gi|410670365|ref|YP_006922736.1| - 3.4e-118 394.6 0.0 3.9e-118 394.4 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region SPC12 PF06645.8 gi|410670367|ref|YP_006922738.1| - 0.00016 21.4 0.6 0.00025 20.8 0.4 1.3 1 0 0 1 1 1 1 Microsomal signal peptidase 12 kDa subunit (SPC12) Prenyltrans_1 PF13243.1 gi|410670368|ref|YP_006922739.1| - 0.084 12.8 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Prenyltransferase-like Semialdhyde_dh PF01118.19 gi|410670369|ref|YP_006922740.1| - 4.8e-15 55.9 0.0 1.4e-13 51.2 0.0 2.3 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain ArgJ PF01960.13 gi|410670370|ref|YP_006922741.1| - 2.3e-137 457.5 11.2 2.6e-137 457.3 7.8 1.0 1 0 0 1 1 1 1 ArgJ family CBS PF00571.23 gi|410670371|ref|YP_006922742.1| - 1e-37 127.6 2.8 1.2e-20 72.9 0.2 2.1 2 0 0 2 2 2 2 CBS domain Aromatic_hydrox PF11723.3 gi|410670371|ref|YP_006922742.1| - 0.12 11.6 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Homotrimeric ring hydroxylase DDE_Tnp_IS1 PF03400.8 gi|410670372|ref|YP_006922743.1| - 2.9e-08 33.8 0.1 3.2e-08 33.7 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase SIMPL PF04402.9 gi|410670373|ref|YP_006922744.1| - 1.6e-51 175.1 6.9 1.9e-51 174.9 4.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) FrhB_FdhB_N PF04422.8 gi|410670374|ref|YP_006922745.1| - 0.11 12.4 0.0 0.41 10.5 0.0 1.8 1 1 1 2 2 2 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term DUF2148 PF09918.4 gi|410670377|ref|YP_006922748.1| - 1.5e-34 117.5 1.2 2.9e-34 116.5 0.8 1.5 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.8 gi|410670377|ref|YP_006922748.1| - 0.00035 20.0 2.3 0.00079 18.9 1.6 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster cobW PF02492.14 gi|410670378|ref|YP_006922749.1| - 3.6e-37 127.5 1.5 5.2e-37 127.0 1.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|410670378|ref|YP_006922749.1| - 5.6e-06 26.1 0.1 1.4e-05 24.8 0.1 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|410670378|ref|YP_006922749.1| - 0.0024 17.3 0.2 0.0042 16.5 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|410670378|ref|YP_006922749.1| - 0.0062 16.0 0.3 0.016 14.6 0.2 1.6 1 0 0 1 1 1 1 AAA-like domain ArgK PF03308.11 gi|410670378|ref|YP_006922749.1| - 0.0062 15.3 0.9 0.0062 15.3 0.6 2.4 2 1 0 2 2 2 1 ArgK protein ATP_bind_1 PF03029.12 gi|410670378|ref|YP_006922749.1| - 0.01 15.3 1.7 0.28 10.6 0.1 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.1 gi|410670378|ref|YP_006922749.1| - 0.014 15.7 0.9 0.031 14.5 0.6 1.6 1 0 0 1 1 1 0 AAA domain MGDG_synth PF06925.6 gi|410670378|ref|YP_006922749.1| - 0.032 14.1 0.0 1.6 8.6 0.0 2.4 2 1 0 2 2 2 0 Monogalactosyldiacylglycerol (MGDG) synthase CbiA PF01656.18 gi|410670378|ref|YP_006922749.1| - 0.043 13.2 2.7 0.049 13.0 0.2 2.2 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.1 gi|410670378|ref|YP_006922749.1| - 0.049 13.3 0.1 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_16 PF13191.1 gi|410670378|ref|YP_006922749.1| - 0.069 13.1 0.0 0.19 11.6 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain KTI12 PF08433.5 gi|410670378|ref|YP_006922749.1| - 0.071 12.3 0.1 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Thymidylate_kin PF02223.12 gi|410670378|ref|YP_006922749.1| - 0.088 12.1 0.7 0.36 10.1 0.1 2.2 2 1 0 2 2 2 0 Thymidylate kinase T2SE PF00437.15 gi|410670378|ref|YP_006922749.1| - 0.098 11.5 2.2 0.13 11.1 0.3 2.0 1 1 0 2 2 2 0 Type II/IV secretion system protein TrwB_AAD_bind PF10412.4 gi|410670378|ref|YP_006922749.1| - 0.12 11.0 0.7 0.17 10.4 0.5 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_17 PF13207.1 gi|410670378|ref|YP_006922749.1| - 0.13 13.1 0.3 0.87 10.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain GTP_EFTU PF00009.22 gi|410670378|ref|YP_006922749.1| - 0.21 11.0 4.1 0.22 10.9 0.4 2.2 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain UPF0079 PF02367.12 gi|410670378|ref|YP_006922749.1| - 0.36 10.4 2.5 0.38 10.3 0.2 2.1 3 0 0 3 3 3 0 Uncharacterised P-loop hydrolase UPF0079 HATPase_c PF02518.21 gi|410670379|ref|YP_006922750.1| - 9.4e-32 109.0 0.1 1.7e-31 108.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|410670379|ref|YP_006922750.1| - 3.4e-27 95.7 0.0 1e-25 90.9 0.0 2.9 3 0 0 3 3 3 1 GAF domain MEDS PF14417.1 gi|410670379|ref|YP_006922750.1| - 1e-26 93.2 0.1 3.4e-26 91.5 0.0 1.9 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS PF00989.19 gi|410670379|ref|YP_006922750.1| - 8.7e-25 86.7 0.0 1.1e-08 34.8 0.0 3.8 4 0 0 4 4 3 3 PAS fold PAS_9 PF13426.1 gi|410670379|ref|YP_006922750.1| - 1.9e-24 85.9 0.0 6.6e-08 32.8 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|410670379|ref|YP_006922750.1| - 3e-20 72.0 0.0 4e-15 55.6 0.0 3.6 3 0 0 3 3 3 2 PAS fold HisKA PF00512.20 gi|410670379|ref|YP_006922750.1| - 5.6e-19 67.9 0.2 2e-18 66.1 0.0 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|410670379|ref|YP_006922750.1| - 1.4e-17 63.7 0.0 1.2e-06 28.4 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|410670379|ref|YP_006922750.1| - 3e-11 42.7 0.0 5.1e-06 26.1 0.0 3.0 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|410670379|ref|YP_006922750.1| - 1.9e-07 31.1 0.0 0.01 15.8 0.0 3.2 3 0 0 3 3 3 2 PAS fold PAS_10 PF13596.1 gi|410670379|ref|YP_006922750.1| - 2.4e-07 31.0 0.0 0.00023 21.3 0.0 3.1 3 0 0 3 3 3 1 PAS domain GAF_3 PF13492.1 gi|410670379|ref|YP_006922750.1| - 4e-07 30.1 0.0 1.3e-06 28.5 0.0 1.9 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|410670379|ref|YP_006922750.1| - 1.3e-05 25.3 0.0 2.6e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.1 gi|410670379|ref|YP_006922750.1| - 0.00099 18.7 0.0 0.017 14.8 0.0 3.0 3 0 0 3 3 3 1 GHKL domain HATPase_c_3 PF13589.1 gi|410670379|ref|YP_006922750.1| - 0.026 14.1 0.3 0.09 12.4 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|410670379|ref|YP_006922750.1| - 0.028 14.2 0.0 0.12 12.2 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain PAS_11 PF14598.1 gi|410670379|ref|YP_006922750.1| - 0.034 14.1 0.0 1.1 9.2 0.0 2.6 2 0 0 2 2 2 0 PAS domain YPEB PF14620.1 gi|410670379|ref|YP_006922750.1| - 0.036 13.0 3.6 0.22 10.5 0.3 3.1 4 0 0 4 4 4 0 YpeB sporulation IncA PF04156.9 gi|410670379|ref|YP_006922750.1| - 5.8 6.4 7.6 0.7 9.4 0.7 2.1 2 0 0 2 2 2 0 IncA protein G-7-MTase PF12803.2 gi|410670380|ref|YP_006922751.1| - 0.068 12.2 0.0 0.08 12.0 0.0 1.0 1 0 0 1 1 1 0 mRNA (guanine-7-)methyltransferase (G-7-MTase) Nuc_deoxyrib_tr PF05014.10 gi|410670381|ref|YP_006922752.1| - 8.8e-32 109.3 0.0 1.2e-31 108.9 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase TIR_2 PF13676.1 gi|410670381|ref|YP_006922752.1| - 0.084 13.0 0.0 0.41 10.8 0.0 1.9 1 1 0 1 1 1 0 TIR domain SBF PF01758.11 gi|410670382|ref|YP_006922753.1| - 2.6e-43 147.6 23.0 2.6e-43 147.6 15.9 1.8 3 0 0 3 3 3 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|410670382|ref|YP_006922753.1| - 2.3e-18 66.3 26.9 2.7e-18 66.1 18.6 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Mem_trans PF03547.13 gi|410670382|ref|YP_006922753.1| - 0.00021 19.7 23.1 0.0083 14.4 3.5 3.0 2 1 1 3 3 3 3 Membrane transport protein AMMECR1 PF01871.12 gi|410670383|ref|YP_006922754.1| - 9.7e-58 194.0 0.0 1.2e-57 193.7 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 PGK PF00162.14 gi|410670384|ref|YP_006922755.1| - 6.5e-119 396.9 0.0 7.4e-119 396.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase FMN_red PF03358.10 gi|410670385|ref|YP_006922756.1| - 2.4e-32 111.5 0.0 3.1e-32 111.1 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|410670385|ref|YP_006922756.1| - 1e-10 41.4 0.0 1.2e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold ACT_5 PF13710.1 gi|410670385|ref|YP_006922756.1| - 0.035 13.8 0.0 16 5.3 0.0 3.4 4 0 0 4 4 4 0 ACT domain DUF2284 PF10050.4 gi|410670385|ref|YP_006922756.1| - 0.09 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) PgpA PF04608.8 gi|410670385|ref|YP_006922756.1| - 0.097 12.4 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Phosphatidylglycerophosphatase A WAK_assoc PF14380.1 gi|410670385|ref|YP_006922756.1| - 0.14 12.7 0.5 0.72 10.3 0.2 2.2 2 1 0 2 2 2 0 Wall-associated receptor kinase C-terminal Flavodoxin_5 PF12724.2 gi|410670385|ref|YP_006922756.1| - 0.14 12.1 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin domain DRTGG PF07085.7 gi|410670386|ref|YP_006922757.1| - 1.8e-29 101.4 0.1 4.1e-29 100.2 0.0 1.7 1 0 0 1 1 1 1 DRTGG domain AAA_26 PF13500.1 gi|410670386|ref|YP_006922757.1| - 6.4e-28 97.7 0.1 2.9e-27 95.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain CbiA PF01656.18 gi|410670386|ref|YP_006922757.1| - 5.4e-08 32.4 0.0 9.2e-08 31.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ATP-grasp_5 PF13549.1 gi|410670387|ref|YP_006922758.1| - 8.9e-78 260.5 0.4 9.3e-77 257.1 0.0 2.5 2 1 1 3 3 3 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|410670387|ref|YP_006922758.1| - 5.8e-57 191.1 2.4 1.1e-55 186.9 0.2 3.3 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|410670387|ref|YP_006922758.1| - 4e-25 88.2 0.6 4e-25 88.2 0.4 2.4 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|410670387|ref|YP_006922758.1| - 2.1e-14 53.7 0.6 2.1e-14 53.7 0.4 3.1 4 0 0 4 4 4 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|410670387|ref|YP_006922758.1| - 0.0088 15.4 0.2 0.035 13.4 0.0 2.1 2 1 0 2 2 2 1 ATP-grasp domain GFO_IDH_MocA PF01408.17 gi|410670387|ref|YP_006922758.1| - 0.02 15.4 0.4 0.11 12.9 0.1 2.3 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold CPSase_L_D2 PF02786.12 gi|410670387|ref|YP_006922758.1| - 0.021 14.1 0.0 0.043 13.0 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.6 gi|410670387|ref|YP_006922758.1| - 0.041 13.3 0.0 0.12 11.8 0.0 1.7 2 0 0 2 2 2 0 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|410670387|ref|YP_006922758.1| - 0.086 12.5 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain WRC PF08879.5 gi|410670387|ref|YP_006922758.1| - 0.27 10.9 0.0 0.54 9.9 0.0 1.4 1 0 0 1 1 1 0 WRC He_PIG PF05345.7 gi|410670389|ref|YP_006922760.1| - 9.5e-23 79.9 44.8 3.2e-08 33.4 2.2 11.7 10 2 1 11 11 11 7 Putative Ig domain Big_3_4 PF13754.1 gi|410670389|ref|YP_006922760.1| - 0.0013 19.0 48.0 0.22 11.8 0.4 10.2 11 1 1 12 12 12 4 Bacterial Ig-like domain (group 3) PKD PF00801.15 gi|410670389|ref|YP_006922760.1| - 0.026 14.2 27.5 0.3 10.8 0.1 8.3 7 2 0 7 7 7 0 PKD domain DUF4367 PF14285.1 gi|410670389|ref|YP_006922760.1| - 0.41 9.9 5.3 3.4 6.9 0.1 3.9 4 0 0 4 4 4 0 Domain of unknown function (DUF4367) He_PIG PF05345.7 gi|410670390|ref|YP_006922761.1| - 1e-18 67.0 19.1 5.4e-06 26.3 0.1 6.0 5 1 0 5 5 5 4 Putative Ig domain Y_Y_Y PF07495.8 gi|410670390|ref|YP_006922761.1| - 0.013 15.2 0.0 0.1 12.3 0.0 2.6 1 0 0 1 1 1 0 Y_Y_Y domain MSP1_C PF07462.6 gi|410670390|ref|YP_006922761.1| - 2.5 6.3 5.1 0.24 9.7 0.4 1.5 2 0 0 2 2 2 0 Merozoite surface protein 1 (MSP1) C-terminus Big_2 PF02368.13 gi|410670391|ref|YP_006922762.1| - 5.9e-11 42.1 14.5 5.9e-11 42.1 10.1 4.0 2 1 1 3 3 3 1 Bacterial Ig-like domain (group 2) Big_3 PF07523.7 gi|410670391|ref|YP_006922762.1| - 0.01 15.8 1.9 0.01 15.8 1.3 4.9 4 2 1 5 5 5 0 Bacterial Ig-like domain (group 3) CopC PF04234.7 gi|410670391|ref|YP_006922762.1| - 0.11 13.1 4.3 0.49 11.0 0.6 3.2 2 1 1 3 3 3 0 CopC domain fn3 PF00041.16 gi|410670391|ref|YP_006922762.1| - 1.4 9.1 8.5 9.5 6.4 0.0 4.7 3 3 0 3 3 3 0 Fibronectin type III domain Voltage_CLC PF00654.15 gi|410670392|ref|YP_006922763.1| - 3.4e-87 292.7 41.5 4.1e-87 292.5 26.0 2.0 1 1 1 2 2 2 2 Voltage gated chloride channel CBS PF00571.23 gi|410670392|ref|YP_006922763.1| - 1.8e-23 82.0 0.2 1.8e-10 40.4 0.0 2.4 2 0 0 2 2 2 2 CBS domain F-box PF00646.28 gi|410670392|ref|YP_006922763.1| - 0.17 11.5 0.6 0.44 10.2 0.0 2.0 2 0 0 2 2 2 0 F-box domain Radical_SAM PF04055.16 gi|410670393|ref|YP_006922764.1| - 1.3e-22 80.6 0.1 1.2e-20 74.3 0.0 2.3 2 0 0 2 2 2 2 Radical SAM superfamily UPF0004 PF00919.15 gi|410670393|ref|YP_006922764.1| - 5.9e-20 70.9 0.2 1.1e-19 70.1 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|410670393|ref|YP_006922764.1| - 0.091 12.5 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 TRAM domain FBPase_glpX PF03320.8 gi|410670394|ref|YP_006922765.1| - 1.9e-116 388.0 4.2 2.3e-116 387.8 2.9 1.0 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded IMCp PF12314.3 gi|410670394|ref|YP_006922765.1| - 0.079 13.1 1.9 0.32 11.1 1.0 2.1 2 0 0 2 2 2 0 Inner membrane complex protein CGI-121 PF08617.5 gi|410670395|ref|YP_006922766.1| - 4.5e-24 84.9 0.2 5.4e-24 84.6 0.1 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 BMC PF00936.14 gi|410670395|ref|YP_006922766.1| - 0.023 14.3 1.1 3.6 7.3 0.0 2.6 1 1 1 2 2 2 0 BMC domain tRNA-synt_1 PF00133.17 gi|410670396|ref|YP_006922767.1| - 5.6e-62 209.6 0.1 4.9e-43 147.0 0.0 2.5 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|410670396|ref|YP_006922767.1| - 2.2e-27 95.7 0.7 4.6e-12 45.2 0.0 3.3 2 1 1 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|410670396|ref|YP_006922767.1| - 5.5e-23 81.4 0.0 9.5e-23 80.6 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|410670396|ref|YP_006922767.1| - 2e-10 40.2 0.1 6.8e-07 28.7 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|410670396|ref|YP_006922767.1| - 1.3e-09 37.6 0.0 2.6e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1d PF00750.14 gi|410670396|ref|YP_006922767.1| - 0.00041 19.2 0.0 0.00087 18.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|410670396|ref|YP_006922767.1| - 0.0051 15.5 0.0 0.0089 14.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (K) HATPase_c PF02518.21 gi|410670397|ref|YP_006922768.1| - 1.9e-21 75.8 0.1 5e-21 74.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|410670397|ref|YP_006922768.1| - 5.6e-05 23.0 0.1 0.00011 22.1 0.0 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|410670397|ref|YP_006922768.1| - 0.00011 21.8 0.1 0.00031 20.4 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2681 PF10883.3 gi|410670397|ref|YP_006922768.1| - 0.019 15.1 0.5 0.039 14.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2681) DUF3153 PF11353.3 gi|410670397|ref|YP_006922768.1| - 0.45 9.9 4.6 0.32 10.4 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3153) zf-C4H2 PF10146.4 gi|410670397|ref|YP_006922768.1| - 4.6 7.1 6.5 7.2 6.5 4.5 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein CN_hydrolase PF00795.17 gi|410670398|ref|YP_006922769.1| - 1.5e-26 92.8 0.0 2e-26 92.5 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF1081 PF06448.6 gi|410670398|ref|YP_006922769.1| - 0.12 12.2 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1081) DS PF01916.12 gi|410670400|ref|YP_006922771.1| - 2.7e-75 253.2 0.4 3.4e-75 252.9 0.3 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase ArsR PF09824.4 gi|410670401|ref|YP_006922772.1| - 3.5e-72 240.9 0.1 4e-72 240.7 0.1 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator Glyco_hydro_26 PF02156.10 gi|410670401|ref|YP_006922772.1| - 0.00076 19.0 0.0 0.00088 18.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 26 DUF387 PF04079.11 gi|410670401|ref|YP_006922772.1| - 0.015 14.6 0.0 0.11 11.8 0.0 2.0 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) MtrB PF05440.7 gi|410670401|ref|YP_006922772.1| - 0.055 13.5 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase subunit B Retrotrans_gag PF03732.12 gi|410670401|ref|YP_006922772.1| - 0.11 12.5 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Retrotransposon gag protein MarR_2 PF12802.2 gi|410670402|ref|YP_006922773.1| - 4.4e-09 35.8 0.0 1.1e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|410670402|ref|YP_006922773.1| - 8.1e-09 34.7 0.0 3.1e-08 32.8 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|410670402|ref|YP_006922773.1| - 2.9e-07 30.0 0.0 6.4e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|410670402|ref|YP_006922773.1| - 1.8e-06 27.5 0.0 6.7e-06 25.7 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|410670402|ref|YP_006922773.1| - 9.7e-06 25.8 0.0 2.9e-05 24.3 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|410670402|ref|YP_006922773.1| - 1.7e-05 24.4 0.1 9.6e-05 22.1 0.0 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_3 PF01381.17 gi|410670402|ref|YP_006922773.1| - 2.5e-05 24.0 0.2 0.0017 18.1 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_45 PF14947.1 gi|410670402|ref|YP_006922773.1| - 0.0011 18.7 0.0 0.0022 17.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix RPA_C PF08784.6 gi|410670402|ref|YP_006922773.1| - 0.0013 19.1 0.0 0.0026 18.1 0.0 1.5 1 0 0 1 1 1 1 Replication protein A C terminal Rrf2 PF02082.15 gi|410670402|ref|YP_006922773.1| - 0.0019 18.2 0.0 0.0054 16.8 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.14 gi|410670402|ref|YP_006922773.1| - 0.0061 16.4 0.0 0.017 15.0 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|410670402|ref|YP_006922773.1| - 0.0061 16.6 0.0 0.019 15.0 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|410670402|ref|YP_006922773.1| - 0.0061 16.1 0.0 0.014 14.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|410670402|ref|YP_006922773.1| - 0.0076 16.2 0.0 0.021 14.7 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain DUF977 PF06163.6 gi|410670402|ref|YP_006922773.1| - 0.0076 15.9 0.1 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) GntR PF00392.16 gi|410670402|ref|YP_006922773.1| - 0.013 14.9 0.0 0.047 13.1 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|410670402|ref|YP_006922773.1| - 0.021 14.4 0.0 0.045 13.3 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain KorB PF08535.5 gi|410670402|ref|YP_006922773.1| - 0.022 14.8 0.0 0.085 13.0 0.0 2.0 2 0 0 2 2 1 0 KorB domain HTH_10 PF04967.7 gi|410670402|ref|YP_006922773.1| - 0.027 14.0 0.0 0.068 12.7 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_13 PF11972.3 gi|410670402|ref|YP_006922773.1| - 0.035 13.9 0.0 0.083 12.7 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain TrmB PF01978.14 gi|410670402|ref|YP_006922773.1| - 0.046 13.4 0.1 0.12 12.0 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_17 PF12728.2 gi|410670402|ref|YP_006922773.1| - 0.072 13.3 0.1 0.19 12.0 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|410670402|ref|YP_006922773.1| - 0.077 12.5 0.1 0.27 10.8 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|410670402|ref|YP_006922773.1| - 0.081 13.0 0.1 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_40 PF14493.1 gi|410670402|ref|YP_006922773.1| - 0.084 13.1 0.2 0.25 11.5 0.1 1.8 2 1 0 2 2 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|410670402|ref|YP_006922773.1| - 0.1 12.1 0.1 0.36 10.4 0.0 2.0 2 0 0 2 2 1 0 AsnC-type helix-turn-helix domain FaeA PF04703.7 gi|410670402|ref|YP_006922773.1| - 0.11 12.6 0.5 0.24 11.5 0.0 1.8 2 0 0 2 2 1 0 FaeA-like protein EAP30 PF04157.11 gi|410670402|ref|YP_006922773.1| - 0.11 11.6 0.0 0.33 10.0 0.0 1.8 1 0 0 1 1 1 0 EAP30/Vps36 family Mnd1 PF03962.10 gi|410670402|ref|YP_006922773.1| - 0.12 11.9 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Mnd1 family Metallophos_2 PF12850.2 gi|410670403|ref|YP_006922774.1| - 7.6e-28 97.3 0.0 9.4e-28 97.0 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|410670403|ref|YP_006922774.1| - 3.8e-09 36.2 1.1 0.0011 18.4 0.0 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|410670406|ref|YP_006922777.1| - 0.0012 18.6 1.1 0.004 16.9 0.2 2.4 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Myb_DNA-bind_4 PF13837.1 gi|410670406|ref|YP_006922777.1| - 0.048 13.7 0.1 0.099 12.7 0.1 1.5 1 0 0 1 1 1 0 Myb/SANT-like DNA-binding domain Integrase_Zn PF02022.14 gi|410670406|ref|YP_006922777.1| - 0.11 11.9 0.2 6.2 6.3 0.0 2.4 2 0 0 2 2 2 0 Integrase Zinc binding domain AA_permease_2 PF13520.1 gi|410670407|ref|YP_006922778.1| - 9.9e-51 172.5 50.3 1.3e-50 172.1 34.9 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|410670407|ref|YP_006922778.1| - 2.2e-45 154.8 45.1 3.1e-45 154.4 31.2 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|410670407|ref|YP_006922778.1| - 5.1e-15 55.8 0.0 3.4e-06 27.3 0.0 2.6 2 1 0 2 2 2 2 Universal stress protein family Spore_permease PF03845.8 gi|410670407|ref|YP_006922778.1| - 4.2e-10 38.8 24.4 4.2e-10 38.8 16.9 2.3 2 0 0 2 2 2 1 Spore germination protein MOR2-PAG1_C PF14225.1 gi|410670407|ref|YP_006922778.1| - 0.0012 18.6 0.1 0.92 9.2 0.0 2.3 2 0 0 2 2 2 2 Cell morphogenesis C-terminal DeoC PF01791.4 gi|410670408|ref|YP_006922779.1| - 6e-44 150.0 0.0 7.2e-44 149.8 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase HATPase_c PF02518.21 gi|410670409|ref|YP_006922780.1| - 1.4e-31 108.4 0.0 2.3e-31 107.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|410670409|ref|YP_006922780.1| - 3.3e-12 46.2 0.0 5.9e-12 45.4 0.0 1.4 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|410670409|ref|YP_006922780.1| - 0.00017 21.2 0.0 0.00027 20.6 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|410670409|ref|YP_006922780.1| - 0.00041 20.0 0.0 0.00075 19.1 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|410670409|ref|YP_006922780.1| - 0.091 12.5 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain RPA_C PF08784.6 gi|410670411|ref|YP_006922782.1| - 0.00023 21.5 0.0 0.00046 20.5 0.0 1.5 1 0 0 1 1 1 1 Replication protein A C terminal tRNA_anti-codon PF01336.20 gi|410670411|ref|YP_006922782.1| - 0.062 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|410670412|ref|YP_006922783.1| - 2e-08 33.9 1.6 0.0056 16.4 0.0 4.2 4 0 0 4 4 4 2 OB-fold nucleic acid binding domain CTC1 PF15489.1 gi|410670412|ref|YP_006922783.1| - 0.034 11.5 0.1 0.045 11.1 0.1 1.1 1 0 0 1 1 1 0 CST, telomere maintenance, complex subunit CTC1 Flavodoxin_1 PF00258.20 gi|410670413|ref|YP_006922784.1| - 4.4e-14 52.6 0.0 2.2e-13 50.4 0.0 1.8 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|410670413|ref|YP_006922784.1| - 2.2e-10 40.7 0.0 3.6e-10 39.9 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|410670413|ref|YP_006922784.1| - 2.2e-06 27.0 0.2 0.02 14.2 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin Flavodoxin_3 PF12641.2 gi|410670413|ref|YP_006922784.1| - 5.3e-06 25.9 0.0 7.6e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain PTS_IIB PF02302.12 gi|410670413|ref|YP_006922784.1| - 0.0012 19.2 0.0 0.0025 18.2 0.0 1.5 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit FMN_red PF03358.10 gi|410670413|ref|YP_006922784.1| - 0.0016 17.9 0.4 0.15 11.5 0.3 2.2 1 1 0 1 1 1 1 NADPH-dependent FMN reductase DUF2622 PF11080.3 gi|410670413|ref|YP_006922784.1| - 0.061 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2622) CBFD_NFYB_HMF PF00808.18 gi|410670414|ref|YP_006922785.1| - 1.3e-16 60.3 0.3 1.6e-16 60.1 0.2 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|410670414|ref|YP_006922785.1| - 3.6e-13 49.4 0.3 4e-13 49.2 0.2 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 Bromo_TP PF07524.8 gi|410670414|ref|YP_006922785.1| - 1.1e-06 28.2 0.0 1.2e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 Bromodomain associated CENP-S PF15630.1 gi|410670414|ref|YP_006922785.1| - 1.8e-06 28.0 0.0 2.1e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TAF PF02969.12 gi|410670414|ref|YP_006922785.1| - 5.5e-05 23.0 0.3 6e-05 22.9 0.2 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.10 gi|410670414|ref|YP_006922785.1| - 0.0019 17.9 0.0 0.002 17.8 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit Peptidase_C39 PF03412.10 gi|410670414|ref|YP_006922785.1| - 0.015 15.0 0.1 0.017 14.9 0.0 1.0 1 0 0 1 1 1 0 Peptidase C39 family TFIID-18kDa PF02269.11 gi|410670414|ref|YP_006922785.1| - 0.016 14.9 0.0 0.019 14.7 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit CENP-T PF15511.1 gi|410670414|ref|YP_006922785.1| - 0.019 14.2 0.0 0.019 14.2 0.0 1.1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T DUF2703 PF10865.3 gi|410670414|ref|YP_006922785.1| - 0.053 13.4 0.1 0.055 13.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2703) PCP_red PF08369.5 gi|410670414|ref|YP_006922785.1| - 0.14 12.0 2.7 0.3 10.9 0.5 2.0 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit Sm_multidrug_ex PF06695.6 gi|410670415|ref|YP_006922786.1| - 1.6e-43 147.6 1.0 2.2e-43 147.2 0.7 1.1 1 0 0 1 1 1 1 Putative small multi-drug export protein Rep_fac_C PF08542.6 gi|410670416|ref|YP_006922787.1| - 9.3e-21 73.6 0.0 1.9e-20 72.6 0.0 1.5 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|410670416|ref|YP_006922787.1| - 2.5e-17 63.2 0.0 9.4e-17 61.4 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|410670416|ref|YP_006922787.1| - 4.6e-17 62.1 0.0 1.4e-14 54.0 0.0 2.7 2 1 0 2 2 2 1 DNA polymerase III, delta subunit AAA_14 PF13173.1 gi|410670416|ref|YP_006922787.1| - 2.2e-07 30.8 0.0 3.8e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|410670416|ref|YP_006922787.1| - 1.4e-06 28.4 0.2 0.029 14.4 0.0 2.9 2 1 1 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|410670416|ref|YP_006922787.1| - 9.4e-06 25.7 0.1 0.0017 18.4 0.0 2.6 1 1 1 2 2 2 1 AAA ATPase domain RuvB_N PF05496.7 gi|410670416|ref|YP_006922787.1| - 1.2e-05 24.4 0.1 7.3e-05 21.9 0.0 2.3 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_3 PF07726.6 gi|410670416|ref|YP_006922787.1| - 1.4e-05 24.7 0.0 3.1e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|410670416|ref|YP_006922787.1| - 0.00026 19.8 0.0 0.0017 17.1 0.0 2.2 1 1 0 2 2 2 1 TIP49 C-terminus AAA_19 PF13245.1 gi|410670416|ref|YP_006922787.1| - 0.00059 19.5 0.0 0.0024 17.5 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain DNA_pol3_delta PF06144.8 gi|410670416|ref|YP_006922787.1| - 0.00075 19.0 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|410670416|ref|YP_006922787.1| - 0.00098 17.9 0.0 0.86 8.2 0.0 2.3 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_18 PF13238.1 gi|410670416|ref|YP_006922787.1| - 0.0021 18.3 0.0 0.0082 16.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain ResIII PF04851.10 gi|410670416|ref|YP_006922787.1| - 0.0023 17.8 0.0 0.0062 16.3 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit IstB_IS21 PF01695.12 gi|410670416|ref|YP_006922787.1| - 0.0032 16.9 0.0 0.014 14.8 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_5 PF07728.9 gi|410670416|ref|YP_006922787.1| - 0.0038 16.9 0.0 0.05 13.3 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activ_2 PF14532.1 gi|410670416|ref|YP_006922787.1| - 0.0061 16.6 0.0 0.014 15.3 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|410670416|ref|YP_006922787.1| - 0.007 15.5 0.0 1.4 8.0 0.0 2.4 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_11 PF13086.1 gi|410670416|ref|YP_006922787.1| - 0.0089 15.6 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|410670416|ref|YP_006922787.1| - 0.012 15.1 0.1 2.1 7.6 0.0 2.8 3 0 0 3 3 3 0 AAA-like domain AAA_17 PF13207.1 gi|410670416|ref|YP_006922787.1| - 0.015 16.1 0.1 0.041 14.6 0.0 2.1 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|410670416|ref|YP_006922787.1| - 0.021 14.2 0.0 7.5 5.9 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_2 PF07724.9 gi|410670416|ref|YP_006922787.1| - 0.022 14.6 0.0 0.075 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) SNF2_N PF00176.18 gi|410670416|ref|YP_006922787.1| - 0.036 12.8 0.0 0.6 8.8 0.0 2.1 1 1 1 2 2 2 0 SNF2 family N-terminal domain MCM PF00493.18 gi|410670416|ref|YP_006922787.1| - 0.07 11.9 0.0 0.11 11.2 0.0 1.2 1 0 0 1 1 1 0 MCM2/3/5 family RNA_helicase PF00910.17 gi|410670416|ref|YP_006922787.1| - 0.12 12.5 0.0 0.29 11.3 0.0 1.6 2 0 0 2 2 1 0 RNA helicase Peptidase_S51 PF03575.12 gi|410670417|ref|YP_006922788.1| - 4.6e-43 146.6 0.0 5.4e-43 146.3 0.0 1.0 1 0 0 1 1 1 1 Peptidase family S51 GATase_3 PF07685.9 gi|410670417|ref|YP_006922788.1| - 6.2e-05 22.6 0.0 8.6e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Tic20 PF09685.5 gi|410670418|ref|YP_006922789.1| - 3.2e-12 46.3 7.0 3.9e-12 46.1 4.9 1.1 1 0 0 1 1 1 1 Tic20-like protein PrgI PF12666.2 gi|410670418|ref|YP_006922789.1| - 2.2 8.5 10.5 2.2 8.4 6.4 1.6 1 1 1 2 2 2 0 PrgI family protein Wzy_C PF04932.10 gi|410670418|ref|YP_006922789.1| - 7.7 6.2 9.4 36 4.1 6.5 1.8 1 1 0 1 1 1 0 O-Antigen ligase Fer4 PF00037.22 gi|410670419|ref|YP_006922790.1| - 2.5e-18 64.8 51.9 3.1e-08 32.8 3.2 6.6 7 0 0 7 7 7 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|410670419|ref|YP_006922790.1| - 8.3e-17 61.3 36.3 1e-08 35.4 9.0 4.3 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410670419|ref|YP_006922790.1| - 4.4e-14 52.4 39.6 3.4e-08 33.6 9.9 4.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410670419|ref|YP_006922790.1| - 5.8e-14 51.2 42.8 4.3e-05 23.1 1.9 5.8 6 0 0 6 6 6 4 4Fe-4S binding domain FeS PF04060.8 gi|410670419|ref|YP_006922790.1| - 8.5e-13 47.6 0.7 8.5e-13 47.6 0.5 3.9 5 0 0 5 5 3 1 Putative Fe-S cluster Fer4_10 PF13237.1 gi|410670419|ref|YP_006922790.1| - 8e-12 44.7 45.1 2.9e-07 30.1 10.3 4.3 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410670419|ref|YP_006922790.1| - 1.4e-11 43.5 45.4 2.4e-05 23.9 1.9 5.9 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|410670419|ref|YP_006922790.1| - 4.4e-09 36.0 41.7 0.0001 22.0 12.2 4.6 2 1 3 5 5 5 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410670419|ref|YP_006922790.1| - 1.2e-07 32.3 39.9 0.0032 18.1 1.2 5.0 5 0 0 5 5 4 4 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|410670419|ref|YP_006922790.1| - 1.9e-06 27.8 51.7 0.0013 18.6 9.4 4.2 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410670419|ref|YP_006922790.1| - 1.8e-05 24.7 49.3 0.0022 18.1 1.2 6.2 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_15 PF13459.1 gi|410670419|ref|YP_006922790.1| - 0.00094 19.7 42.5 0.011 16.2 2.0 5.7 5 1 1 6 6 6 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|410670419|ref|YP_006922790.1| - 0.0018 18.5 45.5 0.024 14.9 1.1 5.0 1 1 3 5 5 5 4 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|410670419|ref|YP_006922790.1| - 0.0086 16.5 58.1 0.13 12.9 2.1 6.9 7 0 0 7 7 7 4 4Fe-4S binding domain Fer4_13 PF13370.1 gi|410670419|ref|YP_006922790.1| - 0.027 14.8 41.5 0.049 14.0 3.1 5.4 4 2 1 5 5 5 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|410670419|ref|YP_006922790.1| - 0.35 11.3 44.6 0.46 10.9 1.2 5.0 5 1 0 5 5 5 0 4Fe-4S dicluster domain Rnf-Nqr PF02508.9 gi|410670420|ref|YP_006922791.1| - 3.7e-62 209.2 20.6 4.2e-62 209.1 14.3 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein Per1 PF04080.8 gi|410670420|ref|YP_006922791.1| - 5.7 6.2 8.0 8 5.7 5.6 1.2 1 0 0 1 1 1 0 Per1-like Herpes_LMP1 PF05297.6 gi|410670420|ref|YP_006922791.1| - 6.3 5.6 8.1 7.6 5.3 5.6 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Rnf-Nqr PF02508.9 gi|410670421|ref|YP_006922792.1| - 1e-57 194.8 17.4 1.2e-57 194.6 12.0 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein DUF4010 PF13194.1 gi|410670421|ref|YP_006922792.1| - 0.014 14.7 14.2 0.094 11.9 6.2 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4010) FMN_bind PF04205.9 gi|410670422|ref|YP_006922793.1| - 1.3e-16 60.5 0.0 2.5e-16 59.6 0.0 1.5 1 0 0 1 1 1 1 FMN-binding domain NQR2_RnfD_RnfE PF03116.10 gi|410670423|ref|YP_006922794.1| - 4.1e-64 216.7 22.2 7e-36 124.0 5.2 2.2 1 1 1 2 2 2 2 NQR2, RnfD, RnfE family RnfC_N PF13375.1 gi|410670424|ref|YP_006922795.1| - 4e-24 84.2 0.7 1.2e-23 82.7 0.5 1.8 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Complex1_51K PF01512.12 gi|410670424|ref|YP_006922795.1| - 4.7e-19 68.6 0.0 9.7e-19 67.5 0.0 1.6 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit Fer4_8 PF13183.1 gi|410670424|ref|YP_006922795.1| - 2.6e-08 33.7 32.7 2.3e-06 27.5 8.7 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410670424|ref|YP_006922795.1| - 7e-08 32.1 9.0 4e-07 29.7 6.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|410670424|ref|YP_006922795.1| - 2.5e-07 30.9 7.3 0.0025 18.1 0.2 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|410670424|ref|YP_006922795.1| - 9.6e-07 28.1 11.3 0.0024 17.4 1.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|410670424|ref|YP_006922795.1| - 2.1e-06 28.0 10.1 5.2e-06 26.7 7.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410670424|ref|YP_006922795.1| - 2.2e-06 27.4 7.0 0.012 15.4 0.6 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410670424|ref|YP_006922795.1| - 2.9e-06 26.9 14.2 0.0018 18.0 0.4 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|410670424|ref|YP_006922795.1| - 5.1e-06 26.7 12.3 5.1e-06 26.7 8.5 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410670424|ref|YP_006922795.1| - 8.7e-06 25.6 12.4 0.0015 18.6 1.0 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|410670424|ref|YP_006922795.1| - 1.2e-05 25.4 12.7 0.00076 19.6 10.0 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410670424|ref|YP_006922795.1| - 3e-05 23.6 15.3 0.0065 16.3 1.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|410670424|ref|YP_006922795.1| - 8.2e-05 22.8 16.9 0.043 14.3 4.5 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|410670424|ref|YP_006922795.1| - 0.00019 22.1 12.0 0.074 13.7 1.2 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain NQRA PF05896.6 gi|410670424|ref|YP_006922795.1| - 0.00044 19.5 0.2 0.00067 18.9 0.1 1.2 1 0 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) DUF3813 PF12758.2 gi|410670424|ref|YP_006922795.1| - 0.0046 17.0 0.0 0.0095 16.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3813) SLBB PF10531.4 gi|410670424|ref|YP_006922795.1| - 0.016 15.0 0.0 0.041 13.7 0.0 1.8 1 0 0 1 1 1 0 SLBB domain SseB_C PF14581.1 gi|410670424|ref|YP_006922795.1| - 0.085 12.7 0.0 0.29 11.0 0.0 1.9 1 0 0 1 1 1 0 SseB protein C-terminal domain Cytochrome_C7 PF14522.1 gi|410670425|ref|YP_006922796.1| - 3.9e-07 29.5 24.6 0.04 13.5 7.8 5.2 4 1 1 5 5 5 4 Cytochrome c7 Cytochrome_C554 PF13435.1 gi|410670425|ref|YP_006922796.1| - 8.9e-07 29.0 24.6 0.022 14.7 0.4 4.7 3 2 1 4 4 4 3 Cytochrome c554 and c-prime Cytochrome_cB PF11783.3 gi|410670425|ref|YP_006922796.1| - 0.0014 18.1 0.1 0.0014 18.1 0.1 4.7 3 2 1 4 4 4 1 Cytochrome c bacterial EF-hand_1 PF00036.27 gi|410670425|ref|YP_006922796.1| - 0.0047 16.1 0.9 0.041 13.1 0.0 2.5 1 1 1 2 2 2 1 EF hand Cytochrom_C PF00034.16 gi|410670425|ref|YP_006922796.1| - 0.0059 17.4 12.6 18 6.2 0.0 5.8 4 1 1 5 5 5 1 Cytochrome c EF-hand_5 PF13202.1 gi|410670425|ref|YP_006922796.1| - 0.0066 15.7 0.6 0.032 13.5 0.0 2.2 1 1 1 2 2 2 1 EF hand Cytochrom_c3_2 PF14537.1 gi|410670425|ref|YP_006922796.1| - 0.028 14.7 27.2 5.3 7.4 11.5 4.7 3 2 0 3 3 3 0 Cytochrome c3 ApbE PF02424.10 gi|410670427|ref|YP_006922798.1| - 2.4e-74 249.8 0.0 3.1e-74 249.4 0.0 1.1 1 0 0 1 1 1 1 ApbE family LigT_PEase PF02834.11 gi|410670428|ref|YP_006922799.1| - 3.7e-26 90.9 0.1 1.7e-13 50.3 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|410670428|ref|YP_006922799.1| - 3e-13 49.9 0.0 3.5e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain 2_5_RNA_ligase2 PF13563.1 gi|410670428|ref|YP_006922799.1| - 9.6e-12 44.8 0.1 1.5e-11 44.2 0.0 1.3 1 1 0 1 1 1 1 2'-5' RNA ligase superfamily Prok-TraM PF09228.5 gi|410670428|ref|YP_006922799.1| - 0.13 12.4 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Prokaryotic Transcriptional repressor TraM DisA_N PF02457.11 gi|410670429|ref|YP_006922800.1| - 3.6e-28 97.1 1.0 2.3e-27 94.5 0.1 2.3 2 0 0 2 2 2 1 DisA bacterial checkpoint controller nucleotide-binding PAC2 PF09754.4 gi|410670429|ref|YP_006922800.1| - 0.042 13.7 0.1 0.06 13.2 0.0 1.2 1 0 0 1 1 1 0 PAC2 family Catalase PF00199.14 gi|410670430|ref|YP_006922801.1| - 9.1e-192 636.8 0.1 1.1e-191 636.6 0.0 1.0 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.7 gi|410670430|ref|YP_006922801.1| - 2.3e-20 72.2 0.0 6.4e-20 70.7 0.0 1.8 2 0 0 2 2 2 1 Catalase-related immune-responsive Grp1_Fun34_YaaH PF01184.14 gi|410670431|ref|YP_006922802.1| - 4.2e-26 91.5 26.7 7e-26 90.8 18.5 1.3 1 1 0 1 1 1 1 GPR1/FUN34/yaaH family DUF697 PF05128.7 gi|410670431|ref|YP_006922802.1| - 6.6 6.2 6.6 2e+02 1.4 4.6 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF697) eRF1_1 PF03463.10 gi|410670433|ref|YP_006922804.1| - 1.4e-28 99.1 0.5 2.1e-28 98.5 0.3 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_2 PF03464.10 gi|410670433|ref|YP_006922804.1| - 1.8e-19 70.3 0.0 2.9e-19 69.7 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|410670433|ref|YP_006922804.1| - 3.5e-19 69.1 0.1 8.5e-19 67.8 0.1 1.7 1 0 0 1 1 1 1 eRF1 domain 3 FbpA PF05833.6 gi|410670434|ref|YP_006922805.1| - 2.4e-95 319.7 0.4 3.3e-95 319.3 0.3 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|410670434|ref|YP_006922805.1| - 1e-29 102.2 0.0 2.1e-29 101.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF814) H2TH PF06831.9 gi|410670434|ref|YP_006922805.1| - 0.00043 19.9 0.1 0.0022 17.7 0.0 2.1 2 0 0 2 2 2 1 Formamidopyrimidine-DNA glycosylase H2TH domain DNA_primase_S PF01896.14 gi|410670435|ref|YP_006922806.1| - 1.1e-20 73.8 0.0 1.7e-20 73.2 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit HHH_5 PF14520.1 gi|410670435|ref|YP_006922806.1| - 6.1e-05 23.1 0.1 0.23 11.6 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain 5_3_exonuc PF01367.15 gi|410670435|ref|YP_006922806.1| - 0.058 13.6 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold Ribosomal_L44 PF00935.14 gi|410670437|ref|YP_006922808.1| - 4.8e-28 96.9 6.4 4.8e-28 96.9 4.4 1.6 1 1 1 2 2 2 1 Ribosomal protein L44 zinc_ribbon_5 PF13719.1 gi|410670437|ref|YP_006922808.1| - 0.017 14.6 2.5 0.17 11.5 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF1062 PF06353.7 gi|410670437|ref|YP_006922808.1| - 0.034 14.3 0.3 0.069 13.3 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1062) zinc_ribbon_4 PF13717.1 gi|410670437|ref|YP_006922808.1| - 0.078 12.6 2.8 0.81 9.4 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|410670437|ref|YP_006922808.1| - 0.19 11.7 4.0 6.5 6.7 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|410670437|ref|YP_006922808.1| - 0.19 11.3 4.0 2.9 7.5 0.3 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-H2C2_2 PF13465.1 gi|410670437|ref|YP_006922808.1| - 0.29 11.4 4.1 2.4 8.5 0.1 2.6 2 0 0 2 2 2 0 Zinc-finger double domain DUF2296 PF10058.4 gi|410670437|ref|YP_006922808.1| - 0.34 10.6 2.0 17 5.2 0.2 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Ribosomal_L33 PF00471.15 gi|410670437|ref|YP_006922808.1| - 1.1 9.5 5.2 0.59 10.4 0.5 2.3 2 0 0 2 2 2 0 Ribosomal protein L33 zinc_ribbon_2 PF13240.1 gi|410670437|ref|YP_006922808.1| - 1.5 8.4 5.2 1.7 8.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|410670438|ref|YP_006922809.1| - 1.8e-25 88.2 0.8 1.9e-25 88.1 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn_Tnp_IS91 PF14319.1 gi|410670438|ref|YP_006922809.1| - 0.005 16.3 0.2 0.005 16.3 0.1 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain zf-BED PF02892.10 gi|410670438|ref|YP_006922809.1| - 0.011 15.5 2.9 0.28 10.9 2.0 2.0 1 1 0 1 1 1 0 BED zinc finger FYVE PF01363.16 gi|410670438|ref|YP_006922809.1| - 0.016 15.0 0.4 0.017 14.9 0.3 1.1 1 0 0 1 1 1 0 FYVE zinc finger Sgf11 PF08209.6 gi|410670438|ref|YP_006922809.1| - 0.024 13.9 2.8 0.1 11.9 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) HypA PF01155.14 gi|410670438|ref|YP_006922809.1| - 0.024 14.3 0.3 0.028 14.1 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|410670438|ref|YP_006922809.1| - 0.067 13.1 1.0 0.1 12.6 0.7 1.2 1 0 0 1 1 1 0 Zinc ribbon domain C1_1 PF00130.17 gi|410670438|ref|YP_006922809.1| - 0.094 12.4 0.4 0.13 12.0 0.3 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_6 PF14599.1 gi|410670438|ref|YP_006922809.1| - 0.16 11.8 2.3 0.31 10.8 1.4 1.8 2 1 0 2 2 2 0 Zinc-ribbon zf-trcl PF13451.1 gi|410670438|ref|YP_006922809.1| - 1.8 8.2 4.1 2.4 7.8 0.4 2.1 1 1 1 2 2 2 0 Probable zinc-binding domain zinc_ribbon_4 PF13717.1 gi|410670438|ref|YP_006922809.1| - 3.2 7.5 5.5 33 4.2 0.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|410670438|ref|YP_006922809.1| - 3.3 7.3 5.4 33 4.1 0.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain EIF_2_alpha PF07541.7 gi|410670439|ref|YP_006922810.1| - 3.9e-29 100.6 0.6 6e-29 100.0 0.4 1.3 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|410670439|ref|YP_006922810.1| - 9.1e-12 44.9 0.8 1.6e-11 44.1 0.1 1.7 2 0 0 2 2 2 1 S1 RNA binding domain TMP_2 PF06791.8 gi|410670439|ref|YP_006922810.1| - 0.032 13.8 0.9 0.055 13.0 0.6 1.3 1 0 0 1 1 1 0 Prophage tail length tape measure protein 3HCDH_N PF02737.13 gi|410670439|ref|YP_006922810.1| - 0.41 10.2 3.4 0.35 10.5 1.3 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PAC2 PF09754.4 gi|410670440|ref|YP_006922811.1| - 4.7e-52 177.0 0.0 5.8e-52 176.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family UBN2_2 PF14227.1 gi|410670440|ref|YP_006922811.1| - 0.037 13.5 0.0 0.066 12.7 0.0 1.3 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type PHP_C PF13263.1 gi|410670441|ref|YP_006922812.1| - 0.003 17.0 0.0 0.011 15.2 0.0 1.9 1 0 0 1 1 1 1 PHP-associated DUF1724 PF08350.5 gi|410670442|ref|YP_006922813.1| - 2e-17 62.4 0.1 4.8e-17 61.2 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) Spore_YtfJ PF09579.5 gi|410670443|ref|YP_006922814.1| - 2.1e-19 69.1 0.3 2.1e-19 69.1 0.2 2.3 2 0 0 2 2 2 1 Sporulation protein YtfJ (Spore_YtfJ) Apolipoprotein PF01442.13 gi|410670443|ref|YP_006922814.1| - 0.015 14.8 2.3 0.021 14.3 1.6 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain IncFII_repA PF02387.10 gi|410670443|ref|YP_006922814.1| - 0.024 13.7 0.1 0.033 13.3 0.1 1.1 1 0 0 1 1 1 0 IncFII RepA protein family DUF3634 PF12321.3 gi|410670443|ref|YP_006922814.1| - 0.049 13.5 0.2 0.089 12.7 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3634) ISG65-75 PF11727.3 gi|410670443|ref|YP_006922814.1| - 0.075 12.0 6.5 0.11 11.4 4.5 1.2 1 0 0 1 1 1 0 Invariant surface glycoprotein DUF763 PF05559.6 gi|410670443|ref|YP_006922814.1| - 0.13 11.1 1.5 0.18 10.7 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF763) DUF3420 PF11900.3 gi|410670443|ref|YP_006922814.1| - 0.68 10.0 3.7 1.8 8.7 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3420) ELL PF10390.4 gi|410670443|ref|YP_006922814.1| - 0.95 8.6 6.5 1.4 8.1 4.5 1.2 1 0 0 1 1 1 0 RNA polymerase II elongation factor ELL HAUS6_N PF14661.1 gi|410670443|ref|YP_006922814.1| - 1.1 8.6 3.6 1.5 8.1 2.5 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus OmpH PF03938.9 gi|410670443|ref|YP_006922814.1| - 1.7 8.5 5.8 2.5 8.0 4.0 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF2201_N PF13203.1 gi|410670443|ref|YP_006922814.1| - 7.7 5.5 9.5 11 5.0 6.6 1.2 1 0 0 1 1 1 0 Putative metallopeptidase domain HATPase_c PF02518.21 gi|410670444|ref|YP_006922815.1| - 3e-30 104.1 0.1 7.6e-30 102.8 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|410670444|ref|YP_006922815.1| - 2.1e-28 98.5 0.0 3.8e-15 55.8 0.0 2.2 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|410670444|ref|YP_006922815.1| - 4.2e-28 97.3 0.0 5.5e-14 51.9 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|410670444|ref|YP_006922815.1| - 1.2e-26 93.0 0.4 5.1e-12 46.0 0.1 2.5 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|410670444|ref|YP_006922815.1| - 7.9e-21 73.9 0.0 1.3e-12 47.5 0.0 2.5 2 0 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|410670444|ref|YP_006922815.1| - 6.9e-14 51.5 0.0 1.8e-13 50.2 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_11 PF14598.1 gi|410670444|ref|YP_006922815.1| - 4e-09 36.3 0.0 0.0017 18.2 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.1 gi|410670444|ref|YP_006922815.1| - 4.5e-09 35.8 0.0 0.00039 20.1 0.0 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c_3 PF13589.1 gi|410670444|ref|YP_006922815.1| - 0.00011 21.9 0.0 0.00022 20.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|410670444|ref|YP_006922815.1| - 0.00029 21.0 0.1 0.0022 18.2 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|410670444|ref|YP_006922815.1| - 0.0005 20.0 0.0 0.13 12.2 0.0 2.7 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|410670444|ref|YP_006922815.1| - 0.011 15.4 0.0 0.049 13.4 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain Cep57_CLD_2 PF14197.1 gi|410670444|ref|YP_006922815.1| - 0.05 13.5 1.9 0.9 9.5 0.4 2.7 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 Rootletin PF15035.1 gi|410670444|ref|YP_006922815.1| - 0.064 13.2 7.9 0.025 14.5 3.0 2.1 3 0 0 3 3 3 0 Ciliary rootlet component, centrosome cohesion Tropomyosin_1 PF12718.2 gi|410670444|ref|YP_006922815.1| - 0.12 12.2 6.3 0.34 10.7 4.4 1.7 1 0 0 1 1 1 0 Tropomyosin like DUF1939 PF09154.5 gi|410670444|ref|YP_006922815.1| - 0.14 12.0 0.0 0.43 10.5 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1939) DUF737 PF05300.6 gi|410670444|ref|YP_006922815.1| - 0.48 10.3 4.5 0.27 11.1 1.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF737) Big_1 PF02369.11 gi|410670444|ref|YP_006922815.1| - 2.2 8.2 5.7 0.28 11.1 0.1 2.2 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 1) YbjQ_1 PF01906.12 gi|410670445|ref|YP_006922816.1| - 2.6e-27 95.3 1.3 2.8e-27 95.1 0.9 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.3 gi|410670445|ref|YP_006922816.1| - 0.00049 20.1 0.1 0.00059 19.9 0.1 1.3 1 0 0 1 1 1 1 Selenium binding protein DUF3798 PF12683.2 gi|410670445|ref|YP_006922816.1| - 0.029 13.4 0.0 0.032 13.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) ADH_zinc_N PF00107.21 gi|410670445|ref|YP_006922816.1| - 0.061 12.8 0.1 0.096 12.2 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase ABC2_membrane_5 PF13346.1 gi|410670447|ref|YP_006922818.1| - 0.17 11.1 5.5 0.19 11.0 3.8 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF772 PF05598.6 gi|410670448|ref|YP_006922819.1| - 1.3e-21 76.2 0.0 1.9e-21 75.7 0.0 1.3 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|410670448|ref|YP_006922819.1| - 1.4e-10 41.0 0.6 5.6e-10 39.1 0.4 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|410670448|ref|YP_006922819.1| - 0.00036 20.1 0.1 0.00066 19.2 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|410670448|ref|YP_006922819.1| - 0.00039 20.1 0.1 0.00068 19.4 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain OrfB_Zn_ribbon PF07282.6 gi|410670449|ref|YP_006922820.1| - 2.1e-25 88.1 1.6 7.1e-25 86.4 1.1 2.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|410670449|ref|YP_006922820.1| - 4.5e-19 68.7 3.9 7.1e-19 68.1 2.7 1.3 1 0 0 1 1 1 1 Probable transposase A2L_zn_ribbon PF08792.5 gi|410670449|ref|YP_006922820.1| - 0.018 14.5 4.2 0.054 12.9 2.9 1.8 1 0 0 1 1 1 0 A2L zinc ribbon domain IBR PF01485.16 gi|410670449|ref|YP_006922820.1| - 0.043 13.6 2.6 0.046 13.5 0.4 2.1 2 0 0 2 2 2 0 IBR domain Tnp_zf-ribbon_2 PF13842.1 gi|410670449|ref|YP_006922820.1| - 0.061 13.7 2.1 0.21 11.9 1.4 2.0 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon Zn-ribbon_8 PF09723.5 gi|410670449|ref|YP_006922820.1| - 4 7.4 7.7 9.1 6.3 3.2 2.7 2 1 0 2 2 2 0 Zinc ribbon domain DDE_Tnp_IS1 PF03400.8 gi|410670452|ref|YP_006922823.1| - 2.4e-06 27.7 0.0 3.5e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 IS1 transposase rve_3 PF13683.1 gi|410670452|ref|YP_006922823.1| - 5.4e-06 25.8 0.0 1.3e-05 24.6 0.0 1.6 2 0 0 2 2 2 1 Integrase core domain Antitoxin-MazE PF04014.13 gi|410670455|ref|YP_006922826.1| - 0.013 15.2 0.0 0.013 15.2 0.0 1.1 1 0 0 1 1 1 0 Antidote-toxin recognition MazE HATPase_c PF02518.21 gi|410670456|ref|YP_006922827.1| - 7e-30 103.0 0.4 1.8e-29 101.7 0.3 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|410670456|ref|YP_006922827.1| - 5e-17 61.6 0.4 1.3e-16 60.2 0.3 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain CHASE PF03924.8 gi|410670456|ref|YP_006922827.1| - 0.0004 19.6 0.0 0.00069 18.8 0.0 1.3 1 0 0 1 1 1 1 CHASE domain HATPase_c_2 PF13581.1 gi|410670456|ref|YP_006922827.1| - 0.00054 19.7 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|410670456|ref|YP_006922827.1| - 0.002 17.7 0.1 0.011 15.3 0.0 2.2 2 0 0 2 2 2 1 GHKL domain DUF106 PF01956.11 gi|410670456|ref|YP_006922827.1| - 0.06 12.8 0.1 0.11 12.0 0.1 1.4 1 0 0 1 1 1 0 Integral membrane protein DUF106 FUN14 PF04930.10 gi|410670456|ref|YP_006922827.1| - 0.069 13.4 0.2 0.19 12.0 0.1 1.7 1 0 0 1 1 1 0 FUN14 family HATPase_c_3 PF13589.1 gi|410670456|ref|YP_006922827.1| - 0.088 12.4 0.1 0.2 11.3 0.1 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|410670457|ref|YP_006922828.1| - 3.3e-31 107.5 0.7 1.5e-30 105.4 0.2 1.8 2 0 0 2 2 2 1 Response regulator receiver domain HTH_24 PF13412.1 gi|410670457|ref|YP_006922828.1| - 1.9e-05 23.9 0.1 4.2e-05 22.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|410670457|ref|YP_006922828.1| - 0.00012 21.4 0.0 0.00023 20.6 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|410670457|ref|YP_006922828.1| - 0.038 13.6 0.1 0.12 12.0 0.1 1.8 1 0 0 1 1 1 0 HTH domain SF3b1 PF08920.5 gi|410670457|ref|YP_006922828.1| - 0.067 13.2 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 Splicing factor 3B subunit 1 TFIIE_alpha PF02002.12 gi|410670457|ref|YP_006922828.1| - 0.072 12.6 0.2 0.16 11.5 0.2 1.6 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_Mga PF08280.6 gi|410670457|ref|YP_006922828.1| - 0.12 12.1 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain MarR_2 PF12802.2 gi|410670458|ref|YP_006922829.1| - 1.3e-05 24.7 0.0 1.7e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_9 PF08221.6 gi|410670458|ref|YP_006922829.1| - 9.6e-05 22.1 0.1 0.00016 21.4 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_IclR PF09339.5 gi|410670458|ref|YP_006922829.1| - 0.0006 19.3 0.0 0.00081 18.9 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|410670458|ref|YP_006922829.1| - 0.0012 18.1 0.0 0.0024 17.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|410670458|ref|YP_006922829.1| - 0.003 17.6 0.1 0.0041 17.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.14 gi|410670458|ref|YP_006922829.1| - 0.0053 16.4 0.0 0.007 16.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|410670458|ref|YP_006922829.1| - 0.0055 16.3 0.1 0.0078 15.8 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|410670458|ref|YP_006922829.1| - 0.0087 15.6 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 HTH domain Mga PF05043.8 gi|410670458|ref|YP_006922829.1| - 0.019 15.2 0.1 0.046 13.9 0.1 1.7 1 1 0 1 1 1 0 Mga helix-turn-helix domain DUF1495 PF07381.6 gi|410670458|ref|YP_006922829.1| - 0.024 14.2 0.1 0.36 10.5 0.0 2.0 1 1 1 2 2 2 0 Winged helix DNA-binding domain (DUF1495) FUR PF01475.14 gi|410670458|ref|YP_006922829.1| - 0.06 13.2 0.1 0.068 13.1 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family Sensor PF13796.1 gi|410670459|ref|YP_006922830.1| - 2.7e-31 108.5 24.1 3.6e-31 108.1 16.7 1.2 1 0 0 1 1 1 1 Putative sensor PLDc_N PF13396.1 gi|410670461|ref|YP_006922832.1| - 1.4e-14 53.4 3.3 1.4e-14 53.4 2.3 1.8 1 1 1 2 2 2 1 Phospholipase_D-nuclease N-terminal DUF3311 PF11755.3 gi|410670461|ref|YP_006922832.1| - 0.011 15.2 4.1 0.017 14.6 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3311) DUF4184 PF13803.1 gi|410670461|ref|YP_006922832.1| - 0.016 14.5 0.1 0.018 14.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4184) Caa3_CtaG PF09678.5 gi|410670461|ref|YP_006922832.1| - 0.03 13.2 3.1 0.037 12.9 2.2 1.1 1 0 0 1 1 1 0 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) NfeD PF01957.13 gi|410670461|ref|YP_006922832.1| - 0.15 12.1 1.8 0.18 11.9 1.2 1.0 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF4131 PF13567.1 gi|410670461|ref|YP_006922832.1| - 0.16 11.3 3.0 0.21 10.9 2.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) EI24 PF07264.6 gi|410670461|ref|YP_006922832.1| - 0.37 10.1 9.4 0.44 9.9 6.5 1.0 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) ABC2_membrane_3 PF12698.2 gi|410670461|ref|YP_006922832.1| - 0.92 8.4 5.9 1.1 8.1 4.1 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein TRAM_LAG1_CLN8 PF03798.11 gi|410670461|ref|YP_006922832.1| - 2.1 7.8 6.4 2.4 7.6 4.4 1.0 1 0 0 1 1 1 0 TLC domain MacB_PCD PF12704.2 gi|410670462|ref|YP_006922833.1| - 1.7e-37 129.2 4.6 1.7e-37 129.2 3.2 2.4 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|410670462|ref|YP_006922833.1| - 6.4e-24 84.0 17.0 4.2e-23 81.4 7.5 2.2 2 0 0 2 2 2 2 FtsX-like permease family CARDB PF07705.6 gi|410670463|ref|YP_006922834.1| - 2.5e-06 27.4 6.2 0.16 11.9 0.0 3.5 3 0 0 3 3 3 3 CARDB Gram_pos_anchor PF00746.16 gi|410670463|ref|YP_006922834.1| - 0.026 14.3 1.1 0.057 13.2 0.8 1.6 1 0 0 1 1 1 0 Gram positive anchor ABC_tran PF00005.22 gi|410670464|ref|YP_006922835.1| - 2.8e-33 115.1 0.0 3.7e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410670464|ref|YP_006922835.1| - 4.4e-14 53.1 0.2 3.9e-12 46.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|410670464|ref|YP_006922835.1| - 6.3e-07 28.8 0.0 0.011 14.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|410670464|ref|YP_006922835.1| - 3.6e-05 23.3 0.0 0.00011 21.7 0.0 1.9 2 0 0 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|410670464|ref|YP_006922835.1| - 5.4e-05 22.6 0.1 0.00011 21.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|410670464|ref|YP_006922835.1| - 0.00048 19.3 0.0 0.0011 18.1 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|410670464|ref|YP_006922835.1| - 0.00057 20.0 0.1 0.013 15.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|410670464|ref|YP_006922835.1| - 0.0039 16.6 0.0 0.018 14.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|410670464|ref|YP_006922835.1| - 0.0045 16.8 0.0 0.0079 16.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|410670464|ref|YP_006922835.1| - 0.0053 17.5 0.1 0.011 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|410670464|ref|YP_006922835.1| - 0.008 16.5 0.1 0.015 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|410670464|ref|YP_006922835.1| - 0.0081 16.1 0.1 0.014 15.3 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain MMR_HSR1 PF01926.18 gi|410670464|ref|YP_006922835.1| - 0.017 15.0 0.0 0.043 13.7 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase G-alpha PF00503.15 gi|410670464|ref|YP_006922835.1| - 0.02 13.5 0.0 0.024 13.3 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_30 PF13604.1 gi|410670464|ref|YP_006922835.1| - 0.022 14.3 0.0 0.071 12.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|410670464|ref|YP_006922835.1| - 0.03 14.0 0.1 0.17 11.5 0.0 2.0 2 0 0 2 2 2 0 NACHT domain SbcCD_C PF13558.1 gi|410670464|ref|YP_006922835.1| - 0.045 13.6 0.0 0.35 10.8 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|410670464|ref|YP_006922835.1| - 0.053 13.2 0.1 0.11 12.2 0.0 1.6 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|410670464|ref|YP_006922835.1| - 0.054 12.5 0.1 3.7 6.4 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.1 gi|410670464|ref|YP_006922835.1| - 0.07 13.4 0.0 0.32 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|410670464|ref|YP_006922835.1| - 0.1 11.4 0.1 0.17 10.6 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain MacB_PCD PF12704.2 gi|410670465|ref|YP_006922836.1| - 2.2e-39 135.4 6.6 2.2e-39 135.4 4.6 2.2 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|410670465|ref|YP_006922836.1| - 1.2e-21 76.7 22.4 3.2e-21 75.3 10.3 2.2 2 0 0 2 2 2 2 FtsX-like permease family MacB_PCD PF12704.2 gi|410670466|ref|YP_006922837.1| - 4.3e-36 124.6 6.5 4.3e-36 124.6 4.5 2.5 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|410670466|ref|YP_006922837.1| - 1.4e-24 86.1 18.1 1.8e-24 85.8 7.1 2.2 2 0 0 2 2 2 2 FtsX-like permease family DUF1418 PF07214.7 gi|410670466|ref|YP_006922837.1| - 0.0027 17.2 2.9 0.0027 17.2 2.0 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF1418) CARDB PF07705.6 gi|410670467|ref|YP_006922838.1| - 0.00014 21.8 0.2 0.53 10.3 0.0 3.4 3 0 0 3 3 3 2 CARDB NPCBM_assoc PF10633.4 gi|410670467|ref|YP_006922838.1| - 0.0047 16.9 0.0 0.72 9.9 0.0 3.4 4 0 0 4 4 4 1 NPCBM-associated, NEW3 domain of alpha-galactosidase ABC_tran PF00005.22 gi|410670468|ref|YP_006922839.1| - 1.2e-32 113.0 0.0 1.6e-32 112.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410670468|ref|YP_006922839.1| - 4.2e-15 56.4 0.0 2.8e-09 37.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|410670468|ref|YP_006922839.1| - 2.9e-07 29.9 0.1 7.3e-06 25.3 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|410670468|ref|YP_006922839.1| - 9.1e-05 21.9 0.2 0.00018 20.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|410670468|ref|YP_006922839.1| - 0.00012 21.6 0.1 0.00034 20.1 0.0 1.7 2 0 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|410670468|ref|YP_006922839.1| - 0.00046 19.4 0.1 0.00077 18.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|410670468|ref|YP_006922839.1| - 0.0035 17.7 0.0 0.0068 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|410670468|ref|YP_006922839.1| - 0.0049 17.6 0.0 0.0086 16.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|410670468|ref|YP_006922839.1| - 0.005 16.9 0.1 0.016 15.3 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|410670468|ref|YP_006922839.1| - 0.0081 16.1 0.1 0.021 14.8 0.0 1.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|410670468|ref|YP_006922839.1| - 0.013 15.3 0.0 0.022 14.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|410670468|ref|YP_006922839.1| - 0.015 14.7 0.0 0.036 13.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|410670468|ref|YP_006922839.1| - 0.017 14.2 0.0 1.4 7.8 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|410670468|ref|YP_006922839.1| - 0.025 14.5 0.2 0.034 14.0 0.2 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase T2SE PF00437.15 gi|410670468|ref|YP_006922839.1| - 0.027 13.3 0.0 0.042 12.7 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.1 gi|410670468|ref|YP_006922839.1| - 0.031 14.5 0.3 0.24 11.7 0.2 2.2 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|410670468|ref|YP_006922839.1| - 0.055 13.1 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|410670468|ref|YP_006922839.1| - 0.063 12.9 0.1 0.25 10.9 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase NB-ARC PF00931.17 gi|410670468|ref|YP_006922839.1| - 0.075 11.8 0.1 0.12 11.2 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain SbcCD_C PF13558.1 gi|410670468|ref|YP_006922839.1| - 0.077 12.9 0.0 0.45 10.4 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RNA12 PF10443.4 gi|410670468|ref|YP_006922839.1| - 0.083 11.3 0.0 0.11 11.0 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein AAA_30 PF13604.1 gi|410670468|ref|YP_006922839.1| - 0.087 12.4 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|410670468|ref|YP_006922839.1| - 0.095 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Yip1 PF04893.12 gi|410670469|ref|YP_006922840.1| - 3.7e-36 124.2 16.4 4.3e-36 123.9 11.4 1.0 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|410670469|ref|YP_006922840.1| - 1.9e-07 30.9 19.9 2.6e-07 30.4 13.8 1.2 1 1 0 1 1 1 1 Protein of unknown function (DUF1282) DUF4366 PF14283.1 gi|410670470|ref|YP_006922841.1| - 0.00034 20.0 0.1 0.11 11.8 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF4366) DUF11 PF01345.13 gi|410670470|ref|YP_006922841.1| - 0.31 11.1 3.0 0.63 10.1 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF11 ABC_tran PF00005.22 gi|410670471|ref|YP_006922842.1| - 9e-35 119.9 0.0 1.2e-34 119.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410670471|ref|YP_006922842.1| - 1.5e-12 48.0 0.1 3.9e-10 40.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|410670471|ref|YP_006922842.1| - 2.3e-08 33.5 0.2 6.7e-07 28.7 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|410670471|ref|YP_006922842.1| - 4.1e-05 22.8 0.4 6.7e-05 22.1 0.3 1.5 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|410670471|ref|YP_006922842.1| - 0.00012 21.5 0.2 0.00022 20.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|410670471|ref|YP_006922842.1| - 0.00041 20.5 0.4 0.013 15.6 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|410670471|ref|YP_006922842.1| - 0.00071 18.7 0.0 0.55 9.2 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|410670471|ref|YP_006922842.1| - 0.0014 18.0 0.4 0.014 14.8 0.2 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_33 PF13671.1 gi|410670471|ref|YP_006922842.1| - 0.0028 17.5 0.0 0.011 15.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|410670471|ref|YP_006922842.1| - 0.0055 16.1 0.0 0.031 13.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|410670471|ref|YP_006922842.1| - 0.0072 16.3 0.2 0.015 15.2 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.18 gi|410670471|ref|YP_006922842.1| - 0.017 15.0 1.0 0.089 12.7 0.7 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|410670471|ref|YP_006922842.1| - 0.028 15.2 0.0 0.042 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|410670471|ref|YP_006922842.1| - 0.028 13.1 0.1 0.1 11.3 0.0 1.8 2 0 0 2 2 2 0 ArgK protein cobW PF02492.14 gi|410670471|ref|YP_006922842.1| - 0.037 13.4 0.0 0.057 12.8 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain FtsK_SpoIIIE PF01580.13 gi|410670471|ref|YP_006922842.1| - 0.037 13.4 0.1 0.068 12.6 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family HAD PF12710.2 gi|410670471|ref|YP_006922842.1| - 0.046 13.8 0.0 0.046 13.8 0.0 1.3 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Ribophorin_II PF05817.9 gi|410670471|ref|YP_006922842.1| - 0.05 11.8 0.0 0.066 11.4 0.0 1.2 1 0 0 1 1 1 0 Oligosaccharyltransferase subunit Ribophorin II Arch_ATPase PF01637.13 gi|410670471|ref|YP_006922842.1| - 0.065 12.9 0.0 0.2 11.3 0.0 1.7 2 0 0 2 2 2 0 Archaeal ATPase KaiC PF06745.8 gi|410670471|ref|YP_006922842.1| - 0.068 12.2 0.2 4.7 6.2 0.0 2.1 2 0 0 2 2 2 0 KaiC SbcCD_C PF13558.1 gi|410670471|ref|YP_006922842.1| - 0.069 13.0 0.0 0.61 10.0 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|410670471|ref|YP_006922842.1| - 0.087 13.1 0.7 0.25 11.6 0.6 1.8 2 1 0 2 2 2 0 AAA domain Miro PF08477.8 gi|410670471|ref|YP_006922842.1| - 0.11 13.0 0.0 0.21 12.1 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein MacB_PCD PF12704.2 gi|410670472|ref|YP_006922843.1| - 3.1e-39 134.9 1.6 3.1e-39 134.9 1.1 1.9 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|410670472|ref|YP_006922843.1| - 3.9e-23 81.5 15.9 3.8e-22 78.3 8.6 2.2 2 0 0 2 2 2 2 FtsX-like permease family Trp_oprn_chp PF09534.5 gi|410670472|ref|YP_006922843.1| - 0.055 13.0 0.4 5.6 6.5 0.0 2.3 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Snf7 PF03357.16 gi|410670472|ref|YP_006922843.1| - 0.079 12.3 0.8 0.15 11.4 0.5 1.3 1 0 0 1 1 1 0 Snf7 CopC PF04234.7 gi|410670473|ref|YP_006922844.1| - 0.0013 19.3 0.0 0.8 10.3 0.0 2.9 2 1 0 2 2 2 2 CopC domain Glyco_hydro_2 PF00703.16 gi|410670473|ref|YP_006922844.1| - 0.078 13.4 0.0 0.2 12.1 0.0 1.7 1 0 0 1 1 1 0 Glycosyl hydrolases family 2 MacB_PCD PF12704.2 gi|410670474|ref|YP_006922845.1| - 1.2e-30 106.7 0.8 1.2e-30 106.7 0.6 2.2 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|410670474|ref|YP_006922845.1| - 9.5e-20 70.5 13.7 9.5e-20 70.5 9.5 2.0 2 0 0 2 2 2 1 FtsX-like permease family Pyrophosphatase PF00719.14 gi|410670475|ref|YP_006922846.1| - 1.2e-10 41.0 0.1 1.9e-10 40.3 0.1 1.3 1 0 0 1 1 1 1 Inorganic pyrophosphatase MacB_PCD PF12704.2 gi|410670476|ref|YP_006922847.1| - 8.7e-33 113.8 0.5 1.2e-32 113.4 0.3 1.2 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|410670476|ref|YP_006922847.1| - 1.5e-23 82.8 12.6 1.6e-23 82.7 5.1 2.2 2 0 0 2 2 2 1 FtsX-like permease family LysE PF01810.13 gi|410670477|ref|YP_006922848.1| - 1e-28 99.9 11.0 1.2e-28 99.6 7.6 1.1 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.11 gi|410670477|ref|YP_006922848.1| - 0.29 10.5 6.2 0.54 9.6 4.3 1.8 1 1 0 1 1 1 0 Integral membrane protein TerC family Peptidase_A24 PF01478.13 gi|410670477|ref|YP_006922848.1| - 2.7 8.1 8.9 8.2 6.6 6.2 1.8 1 1 0 1 1 1 0 Type IV leader peptidase family DUF2088 PF09861.4 gi|410670478|ref|YP_006922849.1| - 6.8e-57 191.7 0.0 1.1e-56 191.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) Mur_ligase_C PF02875.16 gi|410670478|ref|YP_006922849.1| - 0.0084 16.1 0.1 0.026 14.5 0.0 1.8 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain Enolase_C PF00113.17 gi|410670479|ref|YP_006922850.1| - 3.5e-115 384.0 0.3 4.7e-115 383.6 0.2 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|410670479|ref|YP_006922850.1| - 5.9e-59 197.7 0.1 1.5e-58 196.4 0.0 1.7 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.1 gi|410670479|ref|YP_006922850.1| - 0.08 12.9 0.1 0.23 11.4 0.0 1.8 2 0 0 2 2 2 0 Enolase C-terminal domain-like MAAL_C PF07476.6 gi|410670479|ref|YP_006922850.1| - 0.096 11.5 0.1 0.3 9.9 0.0 1.8 2 0 0 2 2 2 0 Methylaspartate ammonia-lyase C-terminus TrmB PF01978.14 gi|410670480|ref|YP_006922851.1| - 0.00021 20.9 0.1 0.00049 19.7 0.0 1.6 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|410670480|ref|YP_006922851.1| - 0.00057 19.5 0.0 0.00098 18.7 0.0 1.4 1 0 0 1 1 1 1 MarR family DUF387 PF04079.11 gi|410670480|ref|YP_006922851.1| - 0.0015 17.9 0.1 0.0034 16.7 0.0 1.6 1 1 1 2 2 2 1 Putative transcriptional regulators (Ypuh-like) TFIIE_alpha PF02002.12 gi|410670480|ref|YP_006922851.1| - 0.052 13.0 0.0 0.061 12.8 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit PadR PF03551.9 gi|410670480|ref|YP_006922851.1| - 0.14 11.9 0.1 0.29 10.9 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF296 PF03479.10 gi|410670481|ref|YP_006922852.1| - 2.3e-16 59.4 0.0 2.5e-16 59.3 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) ABC_tran PF00005.22 gi|410670482|ref|YP_006922853.1| - 4.2e-32 111.2 0.0 6.2e-32 110.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|410670482|ref|YP_006922853.1| - 4.3e-08 32.6 0.2 5.2e-06 25.8 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|410670482|ref|YP_006922853.1| - 5.7e-08 33.0 0.0 0.0034 17.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|410670482|ref|YP_006922853.1| - 1.6e-05 25.0 0.0 3.3e-05 23.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|410670482|ref|YP_006922853.1| - 5.4e-05 22.6 0.1 0.00012 21.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|410670482|ref|YP_006922853.1| - 0.00018 20.7 0.0 0.25 10.3 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|410670482|ref|YP_006922853.1| - 0.00066 19.8 0.3 0.0092 16.1 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|410670482|ref|YP_006922853.1| - 0.00091 18.6 0.1 0.013 14.8 0.0 2.1 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|410670482|ref|YP_006922853.1| - 0.0018 18.0 0.1 0.73 9.5 0.0 2.1 2 0 0 2 2 2 2 NTPase G-alpha PF00503.15 gi|410670482|ref|YP_006922853.1| - 0.012 14.2 0.0 0.012 14.2 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.1 gi|410670482|ref|YP_006922853.1| - 0.019 14.8 0.0 0.065 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|410670482|ref|YP_006922853.1| - 0.022 13.9 0.0 0.039 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|410670482|ref|YP_006922853.1| - 0.026 14.8 1.3 2 8.6 0.5 2.5 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|410670482|ref|YP_006922853.1| - 0.026 14.8 0.1 0.046 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|410670482|ref|YP_006922853.1| - 0.026 13.9 0.1 0.05 13.0 0.1 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_28 PF13521.1 gi|410670482|ref|YP_006922853.1| - 0.038 13.9 0.0 0.32 10.9 0.0 2.1 2 1 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|410670482|ref|YP_006922853.1| - 0.047 13.3 0.1 0.16 11.5 0.1 1.9 1 1 1 2 2 2 0 NACHT domain AAA_17 PF13207.1 gi|410670482|ref|YP_006922853.1| - 0.049 14.4 1.2 0.13 13.0 0.6 1.9 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|410670482|ref|YP_006922853.1| - 0.069 13.0 0.0 0.54 10.2 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Arch_ATPase PF01637.13 gi|410670482|ref|YP_006922853.1| - 0.093 12.4 0.1 0.38 10.4 0.0 2.0 1 1 0 1 1 1 0 Archaeal ATPase MobB PF03205.9 gi|410670482|ref|YP_006922853.1| - 0.11 12.2 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|410670482|ref|YP_006922853.1| - 0.11 12.0 0.3 4.7 6.7 0.1 2.4 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|410670482|ref|YP_006922853.1| - 0.13 11.9 0.1 0.65 9.7 0.0 2.2 3 0 0 3 3 3 0 Part of AAA domain Tubulin PF00091.20 gi|410670483|ref|YP_006922854.1| - 1.2e-28 100.4 0.5 1.9e-28 99.8 0.4 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|410670483|ref|YP_006922854.1| - 0.0027 16.6 0.1 0.013 14.4 0.0 2.0 1 1 1 2 2 2 1 Tubulin like DUF11 PF01345.13 gi|410670484|ref|YP_006922855.1| - 2.5e-13 49.8 5.4 1.9e-08 34.2 0.4 3.3 3 0 0 3 3 3 2 Domain of unknown function DUF11 CARDB PF07705.6 gi|410670484|ref|YP_006922855.1| - 6.4e-09 35.7 2.5 0.0016 18.4 0.1 2.7 2 0 0 2 2 2 2 CARDB TRAP_beta PF05753.9 gi|410670484|ref|YP_006922855.1| - 2e-05 23.8 3.9 0.0053 15.9 0.2 3.0 1 1 2 3 3 3 2 Translocon-associated protein beta (TRAPB) fn3_3 PF14686.1 gi|410670484|ref|YP_006922855.1| - 0.023 14.7 1.2 11 6.1 0.3 3.9 3 1 0 3 3 3 0 Polysaccharide lyase family 4, domain II DUF2393 PF09624.5 gi|410670484|ref|YP_006922855.1| - 0.054 13.0 1.2 0.24 10.9 0.4 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2393) DUF3244 PF11589.3 gi|410670484|ref|YP_006922855.1| - 2 8.1 5.9 0.72 9.5 0.1 3.1 4 1 1 5 5 5 0 Domain of unknown function (DUF3244) QRPTase_C PF01729.14 gi|410670485|ref|YP_006922856.1| - 2.5e-59 199.5 1.2 3.4e-59 199.1 0.9 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|410670485|ref|YP_006922856.1| - 2.8e-19 68.7 0.0 4.8e-19 67.9 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|410670485|ref|YP_006922856.1| - 0.00013 21.1 0.6 0.0018 17.4 0.1 2.2 1 1 1 2 2 2 1 Ribulose-phosphate 3 epimerase family IGPS PF00218.16 gi|410670485|ref|YP_006922856.1| - 0.0056 15.7 0.1 0.0079 15.2 0.1 1.2 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase DUF1341 PF07071.6 gi|410670485|ref|YP_006922856.1| - 0.017 14.6 0.2 0.037 13.5 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1341) TMP-TENI PF02581.12 gi|410670485|ref|YP_006922856.1| - 0.071 12.2 2.3 0.23 10.5 1.6 1.9 1 1 0 1 1 1 0 Thiamine monophosphate synthase/TENI DUF108 PF01958.13 gi|410670486|ref|YP_006922857.1| - 6.6e-36 122.4 1.5 1e-35 121.8 1.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|410670486|ref|YP_006922857.1| - 6.5e-25 87.8 0.1 1.1e-24 87.1 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|410670486|ref|YP_006922857.1| - 5e-08 32.9 0.0 8.6e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|410670486|ref|YP_006922857.1| - 1.6e-05 25.3 0.0 3.2e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|410670486|ref|YP_006922857.1| - 3.6e-05 24.0 0.1 0.0001 22.6 0.1 1.8 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|410670486|ref|YP_006922857.1| - 0.00046 20.0 0.0 0.00073 19.4 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.19 gi|410670486|ref|YP_006922857.1| - 0.0043 17.3 0.0 0.0073 16.6 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|410670486|ref|YP_006922857.1| - 0.011 14.9 0.0 0.017 14.2 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|410670486|ref|YP_006922857.1| - 0.019 15.0 0.0 0.034 14.2 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|410670486|ref|YP_006922857.1| - 0.1 12.5 0.2 0.25 11.3 0.0 1.8 2 0 0 2 2 2 0 TrkA-N domain 3HCDH_N PF02737.13 gi|410670486|ref|YP_006922857.1| - 0.11 12.1 1.1 0.43 10.2 0.5 2.1 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Gp_dh_N PF00044.19 gi|410670486|ref|YP_006922857.1| - 0.12 12.2 0.1 0.33 10.9 0.0 1.8 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH PF00307.26 gi|410670486|ref|YP_006922857.1| - 0.17 11.9 0.1 0.29 11.2 0.0 1.3 1 0 0 1 1 1 0 Calponin homology (CH) domain N1221 PF07923.8 gi|410670486|ref|YP_006922857.1| - 0.18 10.6 0.0 0.24 10.2 0.0 1.1 1 0 0 1 1 1 0 N1221-like protein NadA PF02445.11 gi|410670487|ref|YP_006922858.1| - 6.8e-122 405.9 4.5 7.7e-122 405.7 3.2 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein DUF2498 PF10692.4 gi|410670487|ref|YP_006922858.1| - 0.031 13.9 0.1 0.11 12.0 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2498) UbiA PF01040.13 gi|410670488|ref|YP_006922859.1| - 1.4e-41 142.4 23.5 1.9e-41 141.9 16.3 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DNase-RNase PF02577.9 gi|410670488|ref|YP_006922859.1| - 0.094 11.9 0.1 3.2 6.9 0.0 2.2 2 0 0 2 2 2 0 Bifunctional nuclease AdoMet_Synthase PF01941.14 gi|410670489|ref|YP_006922860.1| - 2e-150 500.7 0.1 2.2e-150 500.5 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.15 gi|410670489|ref|YP_006922860.1| - 0.0046 17.1 0.4 0.057 13.6 0.0 2.7 3 1 0 3 3 3 1 S-adenosylmethionine synthetase, N-terminal domain UPF0278 PF08745.6 gi|410670490|ref|YP_006922861.1| - 3.2e-86 287.8 0.0 3.6e-86 287.6 0.0 1.0 1 0 0 1 1 1 1 UPF0278 family ORC4_C PF14629.1 gi|410670490|ref|YP_006922861.1| - 0.044 13.1 0.0 6.5 6.0 0.0 2.5 2 1 1 3 3 3 0 Origin recognition complex (ORC) subunit 4 C-terminus Response_reg PF00072.19 gi|410670491|ref|YP_006922862.1| - 1.9e-27 95.4 0.5 2.1e-27 95.3 0.3 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DeoRC PF00455.17 gi|410670491|ref|YP_006922862.1| - 0.067 12.8 0.0 9.4 5.8 0.0 2.1 1 1 1 2 2 2 0 DeoR C terminal sensor domain CHASE4 PF05228.8 gi|410670492|ref|YP_006922863.1| - 2.5e-34 118.1 0.1 3.4e-34 117.7 0.1 1.2 1 0 0 1 1 1 1 CHASE4 domain Glyco_transf_6 PF03414.8 gi|410670492|ref|YP_006922863.1| - 0.086 11.2 0.0 0.14 10.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 6 HATPase_c PF02518.21 gi|410670493|ref|YP_006922864.1| - 1.7e-33 114.6 0.0 3.2e-33 113.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|410670493|ref|YP_006922864.1| - 3.8e-21 75.1 0.5 9.6e-21 73.8 0.1 1.9 2 0 0 2 2 2 1 Response regulator receiver domain HisKA PF00512.20 gi|410670493|ref|YP_006922864.1| - 4.9e-20 71.2 0.2 1.2e-19 70.0 0.0 1.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|410670493|ref|YP_006922864.1| - 5.4e-10 39.5 0.0 2.3e-09 37.5 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.1 gi|410670493|ref|YP_006922864.1| - 6e-07 29.1 0.0 1.6e-06 27.7 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|410670493|ref|YP_006922864.1| - 3e-05 23.7 0.0 8.9e-05 22.2 0.0 1.9 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|410670493|ref|YP_006922864.1| - 0.00085 18.9 0.0 0.0018 17.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2328 PF10090.4 gi|410670493|ref|YP_006922864.1| - 0.0033 16.6 0.0 0.0079 15.4 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2328) PAS_4 PF08448.5 gi|410670493|ref|YP_006922864.1| - 0.022 14.7 0.0 0.04 13.9 0.0 1.5 1 0 0 1 1 1 0 PAS fold CCDC-167 PF15188.1 gi|410670493|ref|YP_006922864.1| - 0.043 13.7 1.9 0.43 10.5 0.1 2.4 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 AHSA1 PF08327.6 gi|410670494|ref|YP_006922865.1| - 2.9e-22 79.0 0.0 3.2e-22 78.9 0.0 1.0 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein CENP-B_N PF04218.8 gi|410670495|ref|YP_006922866.1| - 0.014 14.8 0.0 0.017 14.5 0.0 1.1 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain Fer4 PF00037.22 gi|410670496|ref|YP_006922867.1| - 4.5e-19 67.1 19.5 1.4e-10 40.3 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|410670496|ref|YP_006922867.1| - 1.6e-15 56.1 19.0 1.1e-07 31.4 3.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|410670496|ref|YP_006922867.1| - 9.5e-15 54.1 24.7 4.6e-11 42.3 9.3 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410670496|ref|YP_006922867.1| - 7e-14 51.9 12.9 8.6e-14 51.6 8.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410670496|ref|YP_006922867.1| - 3.5e-12 46.3 12.0 5.4e-12 45.7 8.3 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410670496|ref|YP_006922867.1| - 1.6e-11 43.3 18.2 1.7e-06 27.5 3.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|410670496|ref|YP_006922867.1| - 2.5e-11 44.1 9.7 5.6e-06 27.0 0.5 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|410670496|ref|YP_006922867.1| - 1e-10 41.2 14.2 2.2e-10 40.1 9.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410670496|ref|YP_006922867.1| - 2.4e-10 39.8 14.7 6.6e-06 26.0 1.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|410670496|ref|YP_006922867.1| - 1.2e-07 31.5 13.0 1.9e-06 27.8 9.1 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|410670496|ref|YP_006922867.1| - 5e-07 29.8 21.6 0.00048 20.4 5.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|410670496|ref|YP_006922867.1| - 7.2e-07 29.6 21.2 0.00015 22.2 14.7 3.1 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|410670496|ref|YP_006922867.1| - 6.6e-06 26.3 11.1 0.004 17.4 1.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|410670496|ref|YP_006922867.1| - 7.8e-06 26.2 18.8 0.0081 16.5 3.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|410670496|ref|YP_006922867.1| - 8.5e-06 25.5 5.6 9.6e-06 25.4 3.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|410670496|ref|YP_006922867.1| - 6.4e-05 23.2 22.6 0.03 14.6 4.3 3.2 2 2 1 3 3 3 2 4Fe-4S single cluster domain RLI PF04068.10 gi|410670496|ref|YP_006922867.1| - 0.12 11.9 5.5 6.3 6.4 0.4 3.6 3 1 0 3 3 3 0 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4_20 PF14691.1 gi|410670496|ref|YP_006922867.1| - 0.75 9.4 7.6 0.81 9.3 0.4 2.0 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DUF4001 PF13165.1 gi|410670496|ref|YP_006922867.1| - 0.98 9.1 5.8 1.7 8.3 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4001) Fer4_19 PF06902.6 gi|410670496|ref|YP_006922867.1| - 2.3 8.0 9.6 6.1 6.7 6.6 1.9 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster HCV_NS2 PF01538.13 gi|410670496|ref|YP_006922867.1| - 9.6 5.5 9.7 1.4 8.3 2.4 1.9 1 1 1 2 2 2 0 Hepatitis C virus non-structural protein NS2 MCPsignal PF00015.16 gi|410670497|ref|YP_006922868.1| - 6.9e-54 182.6 60.5 3.3e-53 180.3 26.0 5.9 3 2 3 6 6 6 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Cache_1 PF02743.13 gi|410670497|ref|YP_006922868.1| - 1.1e-13 50.4 0.1 4.8e-13 48.4 0.0 2.1 1 0 0 1 1 1 1 Cache domain HAMP PF00672.20 gi|410670497|ref|YP_006922868.1| - 3.4e-11 43.1 20.9 3.9e-05 23.7 0.1 9.9 9 5 3 12 12 12 2 HAMP domain Med2 PF11214.3 gi|410670497|ref|YP_006922868.1| - 0.00027 20.9 3.3 5.2 7.1 0.0 5.7 6 0 0 6 6 6 1 Mediator complex subunit 2 MRP-S28 PF10213.4 gi|410670497|ref|YP_006922868.1| - 0.0031 17.5 2.0 19 5.3 0.0 4.9 5 0 0 5 5 5 0 Mitochondrial ribosomal subunit protein Tweety PF04906.8 gi|410670497|ref|YP_006922868.1| - 0.011 14.1 17.1 0.63 8.3 1.4 6.3 7 0 0 7 7 7 0 Tweety COG2 PF06148.6 gi|410670497|ref|YP_006922868.1| - 0.028 14.2 17.0 0.44 10.4 1.0 6.9 7 1 0 7 7 7 0 COG (conserved oligomeric Golgi) complex component, COG2 BRI3BP PF14965.1 gi|410670497|ref|YP_006922868.1| - 0.038 13.3 0.0 64 2.8 0.0 4.4 4 0 0 4 4 4 0 Negative regulator of p53/TP53 DUF3276 PF11680.3 gi|410670497|ref|YP_006922868.1| - 0.13 12.0 12.9 32 4.3 0.0 6.5 7 0 0 7 7 7 0 Protein of unknown function (DUF3276) GLE1 PF07817.8 gi|410670497|ref|YP_006922868.1| - 0.23 10.3 6.1 0.43 9.4 0.8 2.9 2 0 0 2 2 2 0 GLE1-like protein DUF948 PF06103.6 gi|410670497|ref|YP_006922868.1| - 0.37 10.6 31.1 0.33 10.8 1.9 8.2 9 1 1 10 10 10 0 Bacterial protein of unknown function (DUF948) Spc7 PF08317.6 gi|410670497|ref|YP_006922868.1| - 1.7 7.2 16.1 0.98 8.0 3.3 3.0 3 0 0 3 3 3 0 Spc7 kinetochore protein PhageMin_Tail PF10145.4 gi|410670497|ref|YP_006922868.1| - 4 7.0 42.6 0.04 13.5 7.2 2.9 2 0 0 2 2 2 0 Phage-related minor tail protein APG6 PF04111.7 gi|410670497|ref|YP_006922868.1| - 7.6 5.4 10.2 1.9 7.4 1.1 2.5 2 0 0 2 2 2 0 Autophagy protein Apg6 AAA PF00004.24 gi|410670498|ref|YP_006922869.1| - 2.6e-97 322.1 0.0 4.1e-49 166.1 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|410670498|ref|YP_006922869.1| - 3.2e-27 94.3 0.5 1e-26 92.6 0.4 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|410670498|ref|YP_006922869.1| - 6.2e-16 58.1 0.0 6.4e-09 35.1 0.0 2.7 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|410670498|ref|YP_006922869.1| - 2.2e-14 53.8 0.0 3.7e-06 27.0 0.0 3.2 2 1 0 2 2 2 2 AAA ATPase domain AAA_2 PF07724.9 gi|410670498|ref|YP_006922869.1| - 9.2e-14 51.7 0.0 2.9e-06 27.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|410670498|ref|YP_006922869.1| - 4.3e-13 49.1 0.9 1.9e-05 24.3 0.1 3.7 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|410670498|ref|YP_006922869.1| - 6.1e-13 49.0 0.5 0.00041 20.4 0.1 4.3 2 2 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|410670498|ref|YP_006922869.1| - 2.1e-12 47.9 0.1 3.3e-05 24.6 0.0 3.0 3 0 0 3 3 2 2 AAA domain CDC48_2 PF02933.12 gi|410670498|ref|YP_006922869.1| - 2.5e-12 46.2 0.4 9.3e-12 44.4 0.3 2.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_14 PF13173.1 gi|410670498|ref|YP_006922869.1| - 4.1e-11 42.8 0.0 0.00025 20.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|410670498|ref|YP_006922869.1| - 1.5e-10 40.3 0.0 0.00026 19.8 0.0 2.6 2 0 0 2 2 2 2 TIP49 C-terminus AAA_33 PF13671.1 gi|410670498|ref|YP_006922869.1| - 1.9e-10 40.7 0.0 0.00045 20.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|410670498|ref|YP_006922869.1| - 6.5e-10 38.4 0.0 0.0005 19.2 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin Sigma54_activat PF00158.21 gi|410670498|ref|YP_006922869.1| - 9.1e-10 38.2 0.0 0.012 15.0 0.0 4.0 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_19 PF13245.1 gi|410670498|ref|YP_006922869.1| - 4.8e-09 35.8 0.4 0.0023 17.6 0.0 3.0 3 0 0 3 3 2 2 Part of AAA domain IstB_IS21 PF01695.12 gi|410670498|ref|YP_006922869.1| - 2.1e-08 33.7 0.0 0.0037 16.7 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|410670498|ref|YP_006922869.1| - 1e-07 31.3 0.1 0.0072 15.4 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|410670498|ref|YP_006922869.1| - 1.1e-07 32.2 0.0 0.0096 16.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|410670498|ref|YP_006922869.1| - 1.3e-07 31.7 0.0 0.023 14.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|410670498|ref|YP_006922869.1| - 8.8e-07 28.8 0.0 0.071 12.8 0.0 3.2 2 2 1 3 3 3 2 Archaeal ATPase NACHT PF05729.7 gi|410670498|ref|YP_006922869.1| - 9.6e-07 28.5 0.1 0.36 10.4 0.0 4.2 3 1 0 4 4 4 1 NACHT domain Sigma54_activ_2 PF14532.1 gi|410670498|ref|YP_006922869.1| - 1.1e-06 28.7 0.0 0.023 14.7 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|410670498|ref|YP_006922869.1| - 1.5e-06 28.2 0.0 0.044 13.9 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_3 PF07726.6 gi|410670498|ref|YP_006922869.1| - 3.4e-06 26.6 0.0 0.12 11.9 0.0 2.7 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|410670498|ref|YP_006922869.1| - 1e-05 25.0 5.1 0.085 12.2 0.2 4.0 2 2 1 3 3 3 2 AAA domain PhoH PF02562.11 gi|410670498|ref|YP_006922869.1| - 1.4e-05 24.4 0.3 0.19 10.9 0.0 3.1 4 0 0 4 4 2 2 PhoH-like protein ABC_tran PF00005.22 gi|410670498|ref|YP_006922869.1| - 2.6e-05 24.5 0.0 0.17 12.1 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_24 PF13479.1 gi|410670498|ref|YP_006922869.1| - 2.7e-05 23.8 0.4 0.28 10.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.12 gi|410670498|ref|YP_006922869.1| - 9.5e-05 21.3 0.3 0.46 9.3 0.0 2.9 3 0 0 3 3 3 2 Parvovirus non-structural protein NS1 AAA_30 PF13604.1 gi|410670498|ref|YP_006922869.1| - 0.00011 21.8 0.0 0.36 10.3 0.0 2.8 3 0 0 3 3 2 2 AAA domain DUF815 PF05673.8 gi|410670498|ref|YP_006922869.1| - 0.00012 21.1 0.0 0.38 9.6 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ATP-synt_ab PF00006.20 gi|410670498|ref|YP_006922869.1| - 0.00014 21.4 0.0 0.034 13.6 0.0 2.5 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain NTPase_1 PF03266.10 gi|410670498|ref|YP_006922869.1| - 0.00023 20.9 1.7 2.6 7.7 0.0 4.5 2 2 1 4 4 4 1 NTPase DUF2075 PF09848.4 gi|410670498|ref|YP_006922869.1| - 0.00039 19.4 0.0 0.1 11.5 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Cytidylate_kin2 PF13189.1 gi|410670498|ref|YP_006922869.1| - 0.00087 19.2 0.1 0.39 10.5 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase-like family NB-ARC PF00931.17 gi|410670498|ref|YP_006922869.1| - 0.0011 17.8 0.0 0.93 8.2 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA_11 PF13086.1 gi|410670498|ref|YP_006922869.1| - 0.0014 18.2 0.0 0.6 9.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|410670498|ref|YP_006922869.1| - 0.0017 17.9 0.0 2.3 7.8 0.0 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 KaiC PF06745.8 gi|410670498|ref|YP_006922869.1| - 0.0017 17.4 2.5 3.1 6.8 0.0 3.6 2 2 1 3 3 3 0 KaiC Bac_DnaA PF00308.13 gi|410670498|ref|YP_006922869.1| - 0.0018 17.9 0.0 0.64 9.6 0.0 2.8 2 1 0 2 2 2 1 Bacterial dnaA protein Vps4_C PF09336.5 gi|410670498|ref|YP_006922869.1| - 0.0027 17.5 0.1 1.6 8.7 0.0 2.8 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AFG1_ATPase PF03969.11 gi|410670498|ref|YP_006922869.1| - 0.0036 16.1 0.0 1.1 8.0 0.0 2.6 3 0 0 3 3 3 1 AFG1-like ATPase SKI PF01202.17 gi|410670498|ref|YP_006922869.1| - 0.0052 16.6 0.0 3 7.6 0.0 2.7 2 0 0 2 2 2 0 Shikimate kinase KAP_NTPase PF07693.9 gi|410670498|ref|YP_006922869.1| - 0.0067 15.4 0.0 4.7 6.0 0.0 2.7 2 1 1 3 3 3 0 KAP family P-loop domain ResIII PF04851.10 gi|410670498|ref|YP_006922869.1| - 0.0092 15.8 0.0 4 7.2 0.0 2.9 3 1 0 3 3 2 0 Type III restriction enzyme, res subunit Guanylate_kin PF00625.16 gi|410670498|ref|YP_006922869.1| - 0.011 15.2 1.7 4.4 6.7 0.0 4.2 4 1 1 5 5 4 0 Guanylate kinase IPT PF01745.11 gi|410670498|ref|YP_006922869.1| - 0.021 14.0 0.1 4.3 6.4 0.0 2.5 2 0 0 2 2 2 0 Isopentenyl transferase CPT PF07931.7 gi|410670498|ref|YP_006922869.1| - 0.032 13.8 0.0 7.6 6.1 0.0 2.6 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein KTI12 PF08433.5 gi|410670498|ref|YP_006922869.1| - 0.047 12.8 0.0 9.3 5.3 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Viral_helicase1 PF01443.13 gi|410670498|ref|YP_006922869.1| - 0.095 12.1 0.0 2.1 7.8 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_23 PF13476.1 gi|410670498|ref|YP_006922869.1| - 0.11 12.7 0.0 15 5.8 0.0 2.6 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|410670498|ref|YP_006922869.1| - 0.14 12.6 0.0 11 6.5 0.0 2.6 2 0 0 2 2 2 0 Miro-like protein AAA_10 PF12846.2 gi|410670498|ref|YP_006922869.1| - 0.26 10.7 1.3 2.2 7.6 0.0 2.9 4 0 0 4 4 3 0 AAA-like domain DUF556 PF04476.8 gi|410670499|ref|YP_006922870.1| - 5.9e-97 323.4 0.2 6.6e-97 323.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF556) DeoC PF01791.4 gi|410670499|ref|YP_006922870.1| - 0.057 12.6 0.2 0.31 10.2 0.0 2.1 1 1 1 2 2 2 0 DeoC/LacD family aldolase His_biosynth PF00977.16 gi|410670500|ref|YP_006922871.1| - 8.6e-38 129.8 0.4 9.8e-38 129.6 0.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PRAI PF00697.17 gi|410670500|ref|YP_006922871.1| - 0.006 16.1 0.0 0.013 15.1 0.0 1.5 2 0 0 2 2 2 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HATPase_c PF02518.21 gi|410670502|ref|YP_006922873.1| - 4.8e-22 77.7 0.1 7.5e-22 77.1 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|410670502|ref|YP_006922873.1| - 4.3e-17 61.9 0.0 4.4e-16 58.7 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|410670502|ref|YP_006922873.1| - 3.4e-15 56.3 0.0 3.8e-07 30.4 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|410670502|ref|YP_006922873.1| - 3.7e-13 49.2 0.0 2.4e-08 33.7 0.0 2.7 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|410670502|ref|YP_006922873.1| - 1.8e-10 40.8 0.0 0.00021 21.3 0.0 2.7 2 1 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.1 gi|410670502|ref|YP_006922873.1| - 2.6e-07 30.4 0.0 4.4e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|410670502|ref|YP_006922873.1| - 1.8e-06 27.8 0.0 4.3e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_11 PF14598.1 gi|410670502|ref|YP_006922873.1| - 0.00039 20.3 0.0 0.00082 19.3 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_10 PF13596.1 gi|410670502|ref|YP_006922873.1| - 0.00054 20.2 0.0 0.0035 17.5 0.0 2.3 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|410670502|ref|YP_006922873.1| - 0.0014 18.2 0.0 0.0034 17.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|410670502|ref|YP_006922873.1| - 0.0017 18.1 0.0 0.0048 16.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.1 gi|410670502|ref|YP_006922873.1| - 0.0038 16.9 0.0 0.009 15.7 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_7 PF12860.2 gi|410670502|ref|YP_006922873.1| - 0.019 14.9 0.0 0.051 13.5 0.0 1.8 1 0 0 1 1 1 0 PAS fold Thymidylate_kin PF02223.12 gi|410670503|ref|YP_006922874.1| - 1.8e-13 50.3 0.0 2e-13 50.1 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase TFIIS_C PF01096.13 gi|410670504|ref|YP_006922875.1| - 0.012 15.2 2.9 0.42 10.2 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) HypA PF01155.14 gi|410670504|ref|YP_006922875.1| - 0.029 14.0 0.3 0.03 13.9 0.2 1.0 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-Sec23_Sec24 PF04810.10 gi|410670504|ref|YP_006922875.1| - 0.052 13.1 0.5 1.3 8.5 0.0 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Mu-like_Com PF10122.4 gi|410670504|ref|YP_006922875.1| - 0.055 12.5 0.0 0.069 12.2 0.0 1.2 1 0 0 1 1 1 0 Mu-like prophage protein Com zf-RanBP PF00641.13 gi|410670504|ref|YP_006922875.1| - 0.071 12.2 1.4 3.4 6.8 0.2 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DUF2296 PF10058.4 gi|410670504|ref|YP_006922875.1| - 0.08 12.7 1.1 0.21 11.3 0.1 1.8 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Zn-ribbon_8 PF09723.5 gi|410670504|ref|YP_006922875.1| - 0.2 11.6 3.6 0.51 10.3 2.5 1.6 1 1 0 1 1 1 0 Zinc ribbon domain PHD PF00628.24 gi|410670504|ref|YP_006922875.1| - 0.23 11.1 1.8 0.31 10.7 1.3 1.2 1 0 0 1 1 1 0 PHD-finger zf-LSD1 PF06943.7 gi|410670504|ref|YP_006922875.1| - 0.25 10.9 1.3 9.4 5.9 0.1 2.1 2 0 0 2 2 2 0 LSD1 zinc finger C1_3 PF07649.7 gi|410670504|ref|YP_006922875.1| - 0.45 10.5 9.6 0.42 10.6 1.3 2.1 1 1 1 2 2 2 0 C1-like domain zf-H2C2_2 PF13465.1 gi|410670504|ref|YP_006922875.1| - 0.85 10.0 4.0 8.8 6.8 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_5 PF13719.1 gi|410670504|ref|YP_006922875.1| - 1.5 8.5 3.9 29 4.3 2.7 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-H2C2_5 PF13909.1 gi|410670504|ref|YP_006922875.1| - 9.2 6.7 6.4 9.4 6.6 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc-finger domain dTMP_synthase PF02593.9 gi|410670505|ref|YP_006922876.1| - 1.7e-62 210.5 0.0 2e-62 210.3 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase DapB_N PF01113.15 gi|410670505|ref|YP_006922876.1| - 0.031 14.2 0.0 0.084 12.7 0.0 1.7 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus HHH_8 PF14716.1 gi|410670506|ref|YP_006922877.1| - 3.5e-24 84.7 3.3 2.1e-22 79.0 0.1 3.2 3 0 0 3 3 3 1 Helix-hairpin-helix domain PHP PF02811.14 gi|410670506|ref|YP_006922877.1| - 4e-18 65.8 0.4 3.1e-17 62.9 0.0 2.6 3 1 1 4 4 4 1 PHP domain DNA_pol_B_thumb PF14791.1 gi|410670506|ref|YP_006922877.1| - 5.5e-15 54.8 0.0 1.7e-14 53.2 0.0 1.9 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_5 PF14520.1 gi|410670506|ref|YP_006922877.1| - 5.7e-14 52.0 3.2 8.5e-11 41.8 0.2 3.1 2 1 1 3 3 3 2 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|410670506|ref|YP_006922877.1| - 3.8e-06 26.6 0.7 0.45 10.6 0.0 3.8 3 0 0 3 3 3 1 IMS family HHH motif HHH PF00633.18 gi|410670506|ref|YP_006922877.1| - 8.1e-05 22.1 0.6 0.012 15.2 0.1 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|410670506|ref|YP_006922877.1| - 0.00079 18.9 0.0 0.0021 17.5 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda DUF4346 PF14251.1 gi|410670506|ref|YP_006922877.1| - 0.021 14.5 0.0 0.053 13.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4346) Cdd1 PF11731.3 gi|410670506|ref|YP_006922877.1| - 0.025 14.4 0.0 1 9.3 0.0 2.5 2 0 0 2 2 2 0 Pathogenicity locus DNA_pol_B_palm PF14792.1 gi|410670506|ref|YP_006922877.1| - 0.037 14.0 0.0 0.13 12.2 0.0 1.9 2 0 0 2 2 2 0 DNA polymerase beta palm SNN_transmemb PF09049.5 gi|410670506|ref|YP_006922877.1| - 0.089 12.5 0.2 0.18 11.5 0.1 1.5 1 0 0 1 1 1 0 Stannin transmembrane HHH_2 PF12826.2 gi|410670506|ref|YP_006922877.1| - 0.2 11.5 1.3 2.9 7.8 0.0 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix motif DUF2114 PF09887.4 gi|410670507|ref|YP_006922878.1| - 8.2e-228 756.1 5.2 9.5e-228 755.8 3.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) Thioredoxin PF00085.15 gi|410670508|ref|YP_006922879.1| - 1e-28 99.0 0.0 1.4e-28 98.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|410670508|ref|YP_006922879.1| - 1.1e-08 35.2 0.1 7.5e-08 32.5 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|410670508|ref|YP_006922879.1| - 2.2e-05 24.4 0.0 0.00023 21.1 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|410670508|ref|YP_006922879.1| - 0.00074 19.0 0.0 0.00083 18.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|410670508|ref|YP_006922879.1| - 0.0043 16.8 0.0 0.0072 16.1 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin domain Redoxin PF08534.5 gi|410670508|ref|YP_006922879.1| - 0.014 14.9 0.2 0.048 13.2 0.0 1.8 1 1 1 2 2 2 0 Redoxin Phosducin PF02114.11 gi|410670508|ref|YP_006922879.1| - 0.02 13.6 0.0 0.025 13.3 0.0 1.1 1 0 0 1 1 1 0 Phosducin HyaE PF07449.6 gi|410670508|ref|YP_006922879.1| - 0.059 13.2 0.0 0.098 12.5 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE AhpC-TSA PF00578.16 gi|410670508|ref|YP_006922879.1| - 0.13 11.9 0.0 0.27 10.9 0.0 1.4 1 1 0 1 1 1 0 AhpC/TSA family zinc_ribbon_2 PF13240.1 gi|410670509|ref|YP_006922880.1| - 0.0084 15.5 0.5 0.3 10.6 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|410670509|ref|YP_006922880.1| - 0.0093 15.3 4.1 0.022 14.1 0.4 2.2 2 0 0 2 2 2 1 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|410670509|ref|YP_006922880.1| - 0.014 14.5 0.4 0.26 10.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_3 PF13878.1 gi|410670509|ref|YP_006922880.1| - 0.04 13.4 3.1 0.19 11.3 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Zn-ribbon_8 PF09723.5 gi|410670509|ref|YP_006922880.1| - 0.051 13.5 1.6 2.6 8.0 0.3 2.1 2 0 0 2 2 2 0 Zinc ribbon domain C1_3 PF07649.7 gi|410670509|ref|YP_006922880.1| - 0.069 13.1 1.7 0.35 10.9 0.1 2.1 2 0 0 2 2 2 0 C1-like domain DZR PF12773.2 gi|410670509|ref|YP_006922880.1| - 0.1 12.4 2.1 0.42 10.4 1.5 1.8 1 1 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.1 gi|410670509|ref|YP_006922880.1| - 0.15 11.7 2.0 2.7 7.7 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-HIT PF04438.11 gi|410670509|ref|YP_006922880.1| - 0.15 11.7 0.8 4.2 7.0 0.0 2.1 2 0 0 2 2 2 0 HIT zinc finger GFA PF04828.9 gi|410670509|ref|YP_006922880.1| - 0.18 11.7 2.3 2.9 7.9 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme NOB1_Zn_bind PF08772.6 gi|410670509|ref|YP_006922880.1| - 0.26 11.1 2.4 0.53 10.1 1.6 1.7 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-tcix PF14952.1 gi|410670509|ref|YP_006922880.1| - 0.5 9.7 2.5 11 5.4 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-CSL PF05207.8 gi|410670509|ref|YP_006922880.1| - 0.75 9.3 3.2 2.8 7.5 2.2 1.8 1 1 0 1 1 1 0 CSL zinc finger zf-FPG_IleRS PF06827.9 gi|410670509|ref|YP_006922880.1| - 1.9 8.2 8.3 54 3.5 5.8 2.2 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS Mrr_cat PF04471.7 gi|410670510|ref|YP_006922881.1| - 1.1e-28 99.3 0.0 2.2e-28 98.3 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease bPH_3 PF14470.1 gi|410670510|ref|YP_006922881.1| - 1.1e-05 25.5 0.4 0.012 15.8 0.0 2.3 1 1 1 2 2 2 2 Bacterial PH domain DUF4365 PF14280.1 gi|410670510|ref|YP_006922881.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4365) HMA PF00403.21 gi|410670511|ref|YP_006922882.1| - 2.9e-16 59.3 0.2 3.2e-16 59.2 0.1 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain TusA PF01206.12 gi|410670511|ref|YP_006922882.1| - 0.14 11.7 0.1 0.27 10.8 0.0 1.6 1 1 0 1 1 1 0 Sulfurtransferase TusA E1-E2_ATPase PF00122.15 gi|410670512|ref|YP_006922883.1| - 4.3e-58 196.0 2.1 8.3e-58 195.1 1.4 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|410670512|ref|YP_006922883.1| - 2.1e-55 188.4 5.1 4.8e-55 187.2 3.5 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|410670512|ref|YP_006922883.1| - 3e-45 152.2 4.8 5.3e-15 55.3 0.1 3.7 3 0 0 3 3 3 3 Heavy-metal-associated domain HAD PF12710.2 gi|410670512|ref|YP_006922883.1| - 1.3e-17 64.6 0.1 3.8e-17 63.0 0.0 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|410670512|ref|YP_006922883.1| - 8e-08 32.1 2.2 5.5e-05 22.8 0.3 2.9 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Peptidase_M50 PF02163.17 gi|410670512|ref|YP_006922883.1| - 0.0091 14.9 0.2 0.019 13.9 0.1 1.5 1 0 0 1 1 1 1 Peptidase family M50 Multi_ubiq PF14452.1 gi|410670512|ref|YP_006922883.1| - 0.032 14.2 0.5 0.074 13.0 0.4 1.6 1 0 0 1 1 1 0 Multiubiquitin MGS PF02142.17 gi|410670512|ref|YP_006922883.1| - 0.046 13.6 0.1 0.13 12.1 0.1 1.8 1 0 0 1 1 1 0 MGS-like domain Polysacc_synt PF01943.12 gi|410670512|ref|YP_006922883.1| - 0.049 12.8 13.0 0.24 10.6 0.0 2.8 3 0 0 3 3 3 0 Polysaccharide biosynthesis protein Hydrolase_6 PF13344.1 gi|410670512|ref|YP_006922883.1| - 0.065 13.1 0.4 2.2 8.2 0.0 3.3 4 0 0 4 4 4 0 Haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.9 gi|410670512|ref|YP_006922883.1| - 0.27 10.5 0.0 16 4.7 0.0 2.4 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Virul_fac_BrkB PF03631.10 gi|410670513|ref|YP_006922884.1| - 0.0074 15.6 1.9 0.008 15.5 1.3 1.1 1 0 0 1 1 1 1 Virulence factor BrkB DUF1275 PF06912.6 gi|410670513|ref|YP_006922884.1| - 0.013 14.7 0.9 0.014 14.6 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1275) Colicin_V PF02674.11 gi|410670513|ref|YP_006922884.1| - 0.02 14.7 2.1 0.023 14.5 1.5 1.0 1 0 0 1 1 1 0 Colicin V production protein SUR7 PF06687.7 gi|410670513|ref|YP_006922884.1| - 0.038 13.5 0.6 0.041 13.4 0.4 1.0 1 0 0 1 1 1 0 SUR7/PalI family DUF1129 PF06570.6 gi|410670513|ref|YP_006922884.1| - 0.064 12.5 0.5 0.078 12.2 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF454 PF04304.8 gi|410670513|ref|YP_006922884.1| - 0.2 11.7 7.3 0.82 9.7 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF454) DUF751 PF05421.6 gi|410670513|ref|YP_006922884.1| - 2.8 8.2 5.9 7 7.0 4.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF751) Radical_SAM PF04055.16 gi|410670514|ref|YP_006922885.1| - 1.2e-11 45.0 0.2 1.8e-11 44.5 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily FrhB_FdhB_C PF04432.8 gi|410670515|ref|YP_006922886.1| - 5e-39 133.2 0.0 5e-39 133.2 0.0 1.6 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|410670515|ref|YP_006922886.1| - 2.4e-24 84.9 0.1 5e-24 83.9 0.1 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term YHS PF04945.8 gi|410670515|ref|YP_006922886.1| - 3.5e-10 39.5 1.2 8.2e-10 38.3 0.9 1.5 1 0 0 1 1 1 1 YHS domain Fer4_9 PF13187.1 gi|410670515|ref|YP_006922886.1| - 4.2e-06 26.9 8.9 0.012 15.9 0.7 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain zf-FCS PF06467.9 gi|410670515|ref|YP_006922886.1| - 0.00014 21.4 2.1 0.00014 21.4 1.5 3.3 4 0 0 4 4 3 1 MYM-type Zinc finger with FCS sequence motif Fer4_10 PF13237.1 gi|410670515|ref|YP_006922886.1| - 0.00017 21.3 11.3 0.00017 21.3 7.9 2.2 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|410670515|ref|YP_006922886.1| - 0.00028 20.8 16.2 0.0079 16.1 9.4 3.3 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410670515|ref|YP_006922886.1| - 0.00042 20.6 13.6 0.099 13.0 1.1 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410670515|ref|YP_006922886.1| - 0.0012 18.6 11.3 0.15 11.9 1.9 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|410670515|ref|YP_006922886.1| - 0.0027 17.8 20.3 0.021 15.1 1.7 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.22 gi|410670515|ref|YP_006922886.1| - 0.0036 16.8 21.1 0.036 13.6 3.6 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|410670515|ref|YP_006922886.1| - 0.015 15.1 12.0 0.049 13.4 8.3 1.9 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410670515|ref|YP_006922886.1| - 0.021 15.1 17.3 0.16 12.3 1.7 3.1 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410670515|ref|YP_006922886.1| - 0.033 14.9 15.2 0.2 12.4 1.5 3.3 4 0 0 4 4 3 0 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|410670515|ref|YP_006922886.1| - 0.34 10.9 19.0 0.42 10.6 1.5 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|410670515|ref|YP_006922886.1| - 0.66 10.5 12.0 3 8.4 2.3 3.1 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|410670515|ref|YP_006922886.1| - 1.7 9.0 15.8 0.6 10.5 1.9 2.9 2 1 1 3 3 2 0 4Fe-4S dicluster domain Methyltransf_31 PF13847.1 gi|410670516|ref|YP_006922887.1| - 2.5e-28 98.5 0.0 3.4e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|410670516|ref|YP_006922887.1| - 1.9e-26 92.3 0.0 2.9e-26 91.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|410670516|ref|YP_006922887.1| - 2.9e-20 72.3 0.0 5.3e-20 71.5 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|410670516|ref|YP_006922887.1| - 1.1e-18 67.5 0.0 1.7e-18 66.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410670516|ref|YP_006922887.1| - 9.4e-17 61.6 0.0 1.4e-16 61.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|410670516|ref|YP_006922887.1| - 1.6e-15 57.2 0.0 1.9e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|410670516|ref|YP_006922887.1| - 1.7e-14 53.9 0.0 3.3e-14 53.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|410670516|ref|YP_006922887.1| - 5.1e-11 42.2 0.0 9.2e-11 41.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|410670516|ref|YP_006922887.1| - 4.7e-09 36.2 0.0 8.9e-09 35.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|410670516|ref|YP_006922887.1| - 2.7e-08 33.1 0.0 8.4e-08 31.4 0.0 1.7 1 1 0 1 1 1 1 Putative methyltransferase NodS PF05401.6 gi|410670516|ref|YP_006922887.1| - 1.4e-07 31.1 0.0 1.9e-07 30.7 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.15 gi|410670516|ref|YP_006922887.1| - 5.5e-06 25.6 0.0 7.2e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|410670516|ref|YP_006922887.1| - 1.2e-05 24.2 0.0 1.8e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|410670516|ref|YP_006922887.1| - 1.3e-05 24.7 0.0 1.9e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|410670516|ref|YP_006922887.1| - 4e-05 23.2 0.0 5.7e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.9 gi|410670516|ref|YP_006922887.1| - 0.00028 20.1 0.0 0.0004 19.6 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB GCD14 PF08704.5 gi|410670516|ref|YP_006922887.1| - 0.0017 17.9 0.0 0.0023 17.4 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit CheR PF01739.13 gi|410670516|ref|YP_006922887.1| - 0.003 16.8 0.3 0.59 9.3 0.1 2.2 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain TPMT PF05724.6 gi|410670516|ref|YP_006922887.1| - 0.0038 16.6 0.0 0.0057 16.1 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) RrnaAD PF00398.15 gi|410670516|ref|YP_006922887.1| - 0.015 14.3 0.0 0.022 13.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.1 gi|410670516|ref|YP_006922887.1| - 0.02 15.7 0.0 0.047 14.5 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain ADH_zinc_N PF00107.21 gi|410670516|ref|YP_006922887.1| - 0.021 14.3 0.0 0.044 13.3 0.0 1.6 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_8 PF05148.10 gi|410670516|ref|YP_006922887.1| - 0.026 14.1 0.0 0.045 13.3 0.0 1.5 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_32 PF13679.1 gi|410670516|ref|YP_006922887.1| - 0.042 13.5 0.0 0.071 12.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain FmrO PF07091.6 gi|410670516|ref|YP_006922887.1| - 0.12 11.2 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) tRNA_U5-meth_tr PF05958.6 gi|410670516|ref|YP_006922887.1| - 0.16 10.6 0.0 0.25 10.0 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase N2227 PF07942.7 gi|410670516|ref|YP_006922887.1| - 0.16 10.8 0.0 5.2 5.9 0.0 2.1 1 1 1 2 2 2 0 N2227-like protein RNA_bind_2 PF10133.4 gi|410670517|ref|YP_006922888.1| - 1.1e-11 44.5 0.6 1.2e-11 44.4 0.4 1.1 1 0 0 1 1 1 1 Predicted RNA-binding protein CbiA PF01656.18 gi|410670518|ref|YP_006922889.1| - 2e-26 92.6 0.2 2.6e-26 92.2 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|410670518|ref|YP_006922889.1| - 2e-14 53.3 1.3 6.3e-13 48.4 0.2 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase YhjQ PF06564.7 gi|410670518|ref|YP_006922889.1| - 9.4e-08 31.7 0.0 2e-05 24.0 0.0 2.1 2 0 0 2 2 2 1 YhjQ protein Fer4_NifH PF00142.13 gi|410670518|ref|YP_006922889.1| - 7.4e-07 28.6 1.8 8.6e-05 21.8 0.0 2.3 1 1 1 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|410670518|ref|YP_006922889.1| - 1.7e-06 28.0 0.1 0.00023 21.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|410670518|ref|YP_006922889.1| - 0.00022 20.0 0.2 0.0004 19.2 0.1 1.3 1 0 0 1 1 1 1 ArgK protein MipZ PF09140.6 gi|410670518|ref|YP_006922889.1| - 0.00037 19.6 0.1 0.00086 18.4 0.0 1.7 2 0 0 2 2 2 1 ATPase MipZ KTI12 PF08433.5 gi|410670518|ref|YP_006922889.1| - 0.00056 19.2 0.0 0.0073 15.5 0.0 2.3 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|410670518|ref|YP_006922889.1| - 0.0006 19.4 0.0 0.00094 18.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|410670518|ref|YP_006922889.1| - 0.00067 19.3 0.0 0.0016 18.1 0.0 1.7 1 0 0 1 1 1 1 Adenylylsulphate kinase SRP54 PF00448.17 gi|410670518|ref|YP_006922889.1| - 0.0007 19.0 1.4 0.0016 17.9 0.3 1.9 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain LpxK PF02606.9 gi|410670518|ref|YP_006922889.1| - 0.0008 18.4 0.8 0.014 14.3 0.2 2.3 2 0 0 2 2 2 1 Tetraacyldisaccharide-1-P 4'-kinase AAA_17 PF13207.1 gi|410670518|ref|YP_006922889.1| - 0.00088 20.0 0.1 0.0026 18.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|410670518|ref|YP_006922889.1| - 0.0016 18.7 0.0 0.003 17.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter NTPase_1 PF03266.10 gi|410670518|ref|YP_006922889.1| - 0.0019 17.9 0.0 0.0036 17.0 0.0 1.5 1 0 0 1 1 1 1 NTPase ATP_bind_1 PF03029.12 gi|410670518|ref|YP_006922889.1| - 0.0025 17.3 0.1 0.0051 16.3 0.0 1.5 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.1 gi|410670518|ref|YP_006922889.1| - 0.0037 17.2 0.0 0.0066 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|410670518|ref|YP_006922889.1| - 0.0063 16.8 0.2 0.025 14.8 0.1 2.1 1 1 1 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|410670518|ref|YP_006922889.1| - 0.0063 16.2 0.1 0.02 14.6 0.1 2.0 1 0 0 1 1 1 1 Part of AAA domain CTP_synth_N PF06418.9 gi|410670518|ref|YP_006922889.1| - 0.016 14.3 0.1 0.027 13.5 0.0 1.4 1 0 0 1 1 1 0 CTP synthase N-terminus Abhydrolase_5 PF12695.2 gi|410670518|ref|YP_006922889.1| - 0.016 14.9 0.0 0.024 14.4 0.0 1.4 1 1 0 1 1 1 0 Alpha/beta hydrolase family AAA_10 PF12846.2 gi|410670518|ref|YP_006922889.1| - 0.016 14.6 0.1 0.033 13.6 0.1 1.4 1 1 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|410670518|ref|YP_006922889.1| - 0.022 14.4 0.1 0.059 13.0 0.1 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|410670518|ref|YP_006922889.1| - 0.033 13.6 0.3 0.19 11.1 0.1 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain VirC1 PF07015.6 gi|410670518|ref|YP_006922889.1| - 0.036 13.1 0.2 0.085 11.9 0.1 1.7 2 0 0 2 2 2 0 VirC1 protein Thymidylate_kin PF02223.12 gi|410670518|ref|YP_006922889.1| - 0.048 13.0 0.0 0.12 11.7 0.0 1.6 1 0 0 1 1 1 0 Thymidylate kinase CENP-B_N PF04218.8 gi|410670518|ref|YP_006922889.1| - 0.055 12.8 0.0 0.36 10.2 0.0 2.1 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain AAA_29 PF13555.1 gi|410670518|ref|YP_006922889.1| - 0.085 12.4 0.4 0.16 11.5 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.12 gi|410670518|ref|YP_006922889.1| - 0.1 12.4 1.6 0.14 11.9 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_28 PF13521.1 gi|410670518|ref|YP_006922889.1| - 0.11 12.5 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|410670518|ref|YP_006922889.1| - 0.33 10.5 1.7 0.91 9.0 1.2 1.8 1 1 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|410670518|ref|YP_006922889.1| - 0.33 10.3 3.3 4.5 6.6 2.4 2.5 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain Thg1C PF14413.1 gi|410670520|ref|YP_006922891.1| - 0.036 13.7 0.0 0.038 13.6 0.0 1.0 1 0 0 1 1 1 0 Thg1 C terminal domain DDE_Tnp_1 PF01609.16 gi|410670521|ref|YP_006922892.1| - 4.6e-09 36.1 2.6 5.2e-08 32.7 1.8 2.1 1 1 0 1 1 1 1 Transposase DDE domain Amnionless PF14828.1 gi|410670521|ref|YP_006922892.1| - 3.1 6.1 5.0 0.63 8.4 1.1 1.4 2 0 0 2 2 2 0 Amnionless Methyltransf_11 PF08241.7 gi|410670522|ref|YP_006922893.1| - 1.7e-21 76.5 0.0 3e-21 75.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|410670522|ref|YP_006922893.1| - 8.2e-17 61.2 0.0 9.7e-17 60.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410670522|ref|YP_006922893.1| - 6.5e-15 55.6 0.0 8.7e-15 55.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|410670522|ref|YP_006922893.1| - 2.4e-14 53.3 0.0 3.3e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|410670522|ref|YP_006922893.1| - 2.9e-13 50.0 0.0 5.8e-13 49.0 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|410670522|ref|YP_006922893.1| - 3.7e-13 49.1 0.0 4.5e-13 48.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|410670522|ref|YP_006922893.1| - 3.1e-11 43.3 0.0 4.8e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|410670522|ref|YP_006922893.1| - 3.1e-09 37.1 0.0 4.7e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|410670522|ref|YP_006922893.1| - 2.3e-06 27.0 0.0 3.8e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|410670522|ref|YP_006922893.1| - 2.3e-05 23.6 0.0 4e-05 22.8 0.0 1.5 1 1 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_8 PF05148.10 gi|410670522|ref|YP_006922893.1| - 5.3e-05 22.9 0.0 0.00011 21.8 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase NodS PF05401.6 gi|410670522|ref|YP_006922893.1| - 0.00047 19.6 0.0 0.00059 19.2 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|410670522|ref|YP_006922893.1| - 0.0013 18.1 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CheR PF01739.13 gi|410670522|ref|YP_006922893.1| - 0.0069 15.6 0.1 4.7 6.4 0.0 2.7 2 1 0 2 2 2 2 CheR methyltransferase, SAM binding domain Methyltransf_29 PF03141.11 gi|410670522|ref|YP_006922893.1| - 0.086 11.1 0.0 0.11 10.8 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase UPF0020 PF01170.13 gi|410670522|ref|YP_006922893.1| - 0.099 12.2 0.0 0.17 11.4 0.0 1.3 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 CMAS PF02353.15 gi|410670522|ref|YP_006922893.1| - 0.11 11.6 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF772 PF05598.6 gi|410670524|ref|YP_006922895.1| - 6e-22 77.3 0.1 2.1e-21 75.5 0.0 1.8 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|410670524|ref|YP_006922895.1| - 2.9e-12 46.6 0.8 1.4e-10 41.0 0.6 2.2 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|410670524|ref|YP_006922895.1| - 0.00028 20.5 0.1 0.0005 19.7 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|410670524|ref|YP_006922895.1| - 0.00041 20.1 0.1 0.00075 19.2 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|410670524|ref|YP_006922895.1| - 0.022 14.7 0.1 0.043 13.8 0.1 1.5 1 0 0 1 1 1 0 Transposase DDE domain ABC1 PF03109.11 gi|410670525|ref|YP_006922896.1| - 7.5e-39 132.3 0.0 1.7e-38 131.2 0.0 1.6 1 0 0 1 1 1 1 ABC1 family APH PF01636.18 gi|410670525|ref|YP_006922896.1| - 1.3e-05 25.0 0.0 2.4e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.20 gi|410670525|ref|YP_006922896.1| - 9.9e-05 21.5 0.7 0.00016 20.9 0.1 1.7 2 1 0 2 2 2 1 Protein kinase domain WaaY PF06176.6 gi|410670525|ref|YP_006922896.1| - 0.0002 20.6 0.1 0.0002 20.6 0.1 1.8 2 0 0 2 2 2 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.12 gi|410670525|ref|YP_006922896.1| - 0.062 12.3 0.0 0.18 10.8 0.0 1.7 1 1 0 1 1 1 0 Protein tyrosine kinase Radical_SAM PF04055.16 gi|410670526|ref|YP_006922897.1| - 7.3e-18 65.2 0.0 1.5e-17 64.2 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|410670526|ref|YP_006922897.1| - 1.2e-07 31.8 0.6 1.4e-06 28.3 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|410670526|ref|YP_006922897.1| - 6e-06 26.4 0.1 2.3e-05 24.5 0.0 1.9 1 1 1 2 2 2 1 4Fe-4S single cluster domain TrmB PF01978.14 gi|410670527|ref|YP_006922898.1| - 7e-19 67.2 0.0 2.3e-18 65.6 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|410670527|ref|YP_006922898.1| - 0.00021 20.8 0.1 0.00062 19.3 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain Regulator_TrmB PF11495.3 gi|410670527|ref|YP_006922898.1| - 0.00089 18.2 0.3 0.0035 16.3 0.2 2.0 1 1 0 1 1 1 1 Archaeal transcriptional regulator TrmB MarR_2 PF12802.2 gi|410670527|ref|YP_006922898.1| - 0.0025 17.4 0.0 0.0042 16.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|410670527|ref|YP_006922898.1| - 0.0036 17.5 0.0 0.0079 16.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|410670527|ref|YP_006922898.1| - 0.0081 16.2 0.0 0.02 14.9 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator KGK PF08872.5 gi|410670527|ref|YP_006922898.1| - 0.017 15.2 0.2 0.08 13.0 0.0 2.1 2 1 1 3 3 3 0 KGK domain Prominin PF05478.6 gi|410670527|ref|YP_006922898.1| - 0.038 11.5 0.4 0.059 10.9 0.2 1.2 1 1 0 1 1 1 0 Prominin MarR PF01047.17 gi|410670527|ref|YP_006922898.1| - 0.09 12.4 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF742 PF05331.6 gi|410670527|ref|YP_006922898.1| - 0.13 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) DUF535 PF04393.8 gi|410670528|ref|YP_006922899.1| - 0.032 13.1 0.0 0.041 12.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF535) Glu-tRNAGln PF02686.10 gi|410670529|ref|YP_006922900.1| - 1.9e-24 85.2 0.4 2.2e-24 85.0 0.3 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit CPSF73-100_C PF11718.3 gi|410670529|ref|YP_006922900.1| - 0.13 11.6 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term Amidase PF01425.16 gi|410670530|ref|YP_006922901.1| - 4.7e-153 510.1 0.1 5.3e-153 510.0 0.1 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.10 gi|410670531|ref|YP_006922902.1| - 7.8e-110 366.2 0.0 1.1e-109 365.7 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|410670531|ref|YP_006922902.1| - 1.4e-38 131.9 2.7 2e-38 131.4 1.9 1.2 1 0 0 1 1 1 1 GatB domain CBM_17_28 PF03424.9 gi|410670531|ref|YP_006922902.1| - 0.017 14.7 0.2 0.028 14.0 0.1 1.2 1 0 0 1 1 1 0 Carbohydrate binding domain (family 17/28) zf-Di19 PF05605.7 gi|410670531|ref|YP_006922902.1| - 0.068 13.3 0.1 0.14 12.3 0.1 1.4 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding HTH_20 PF12840.2 gi|410670532|ref|YP_006922903.1| - 0.0027 17.4 0.0 0.0035 17.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|410670532|ref|YP_006922903.1| - 0.023 14.7 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2582 PF10771.4 gi|410670532|ref|YP_006922903.1| - 0.055 13.3 0.1 0.12 12.2 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2582) HTH_45 PF14947.1 gi|410670532|ref|YP_006922903.1| - 0.076 12.8 0.3 0.17 11.7 0.0 1.9 2 1 0 2 2 2 0 Winged helix-turn-helix Ribosomal_L40e PF01020.12 gi|410670533|ref|YP_006922904.1| - 2.8e-05 23.6 7.3 3.6e-05 23.2 5.0 1.2 1 0 0 1 1 1 1 Ribosomal L40e family zf-RanBP PF00641.13 gi|410670533|ref|YP_006922904.1| - 0.0048 15.9 5.3 0.0063 15.5 3.7 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DZR PF12773.2 gi|410670533|ref|YP_006922904.1| - 0.0085 15.8 1.8 0.0093 15.7 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-DHHC PF01529.15 gi|410670533|ref|YP_006922904.1| - 0.012 15.0 2.2 0.012 14.9 1.5 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase DnaJ_CXXCXGXG PF00684.14 gi|410670533|ref|YP_006922904.1| - 0.036 14.1 1.5 0.042 13.8 1.0 1.2 1 0 0 1 1 1 0 DnaJ central domain zf-tcix PF14952.1 gi|410670533|ref|YP_006922904.1| - 0.041 13.2 4.4 0.049 12.9 3.0 1.3 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding DNA_RNApol_7kD PF03604.8 gi|410670533|ref|YP_006922904.1| - 2.7 7.5 8.1 2 7.9 3.9 2.0 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit PcrB PF01884.12 gi|410670534|ref|YP_006922905.1| - 4.3e-79 265.0 0.9 5.1e-79 264.7 0.6 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|410670534|ref|YP_006922905.1| - 3.3e-05 23.2 0.1 5.4e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein Ribul_P_3_epim PF00834.14 gi|410670534|ref|YP_006922905.1| - 0.01 14.9 0.3 0.017 14.2 0.2 1.3 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Trp_syntA PF00290.15 gi|410670534|ref|YP_006922905.1| - 0.011 14.3 0.3 0.034 12.6 0.1 1.8 2 0 0 2 2 2 0 Tryptophan synthase alpha chain DHO_dh PF01180.16 gi|410670534|ref|YP_006922905.1| - 0.019 13.9 1.1 0.03 13.2 0.7 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase TIM-br_sig_trns PF09370.5 gi|410670534|ref|YP_006922905.1| - 0.032 13.3 1.4 0.035 13.1 0.2 1.6 2 0 0 2 2 2 0 TIM-barrel signal transduction protein ABC_tran PF00005.22 gi|410670535|ref|YP_006922906.1| - 3.5e-56 189.2 0.0 8.7e-29 100.5 0.0 2.7 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|410670535|ref|YP_006922906.1| - 1.2e-13 51.6 8.6 6.9e-06 26.2 1.4 4.3 2 2 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|410670535|ref|YP_006922906.1| - 4.3e-11 42.4 2.7 0.0019 17.3 0.0 4.1 4 0 0 4 4 4 3 AAA ATPase domain DUF258 PF03193.11 gi|410670535|ref|YP_006922906.1| - 4e-10 39.0 0.3 4.2e-05 22.7 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|410670535|ref|YP_006922906.1| - 3.2e-09 37.6 0.6 0.0035 18.1 0.0 3.3 2 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|410670535|ref|YP_006922906.1| - 5.4e-09 36.6 1.6 5.6e-05 23.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|410670535|ref|YP_006922906.1| - 2.3e-08 34.2 2.1 0.0015 18.5 0.1 3.3 2 2 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|410670535|ref|YP_006922906.1| - 3.4e-08 32.9 4.1 0.00059 19.3 0.0 3.0 3 0 0 3 3 3 2 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|410670535|ref|YP_006922906.1| - 1.6e-06 28.2 8.5 0.028 14.5 0.2 4.6 4 2 1 5 5 5 2 AAA domain AAA_25 PF13481.1 gi|410670535|ref|YP_006922906.1| - 1e-05 25.0 0.6 0.16 11.3 0.2 3.9 4 1 0 4 4 4 2 AAA domain SbcCD_C PF13558.1 gi|410670535|ref|YP_006922906.1| - 3.4e-05 23.6 0.2 0.075 12.9 0.0 3.8 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|410670535|ref|YP_006922906.1| - 3.5e-05 23.3 0.6 0.4 10.0 0.0 3.6 5 0 0 5 5 5 2 AAA-like domain UPF0079 PF02367.12 gi|410670535|ref|YP_006922906.1| - 4.3e-05 23.1 1.8 0.059 12.9 0.1 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|410670535|ref|YP_006922906.1| - 4.8e-05 23.6 7.5 0.017 15.3 0.1 3.6 3 1 0 3 3 3 2 AAA domain PduV-EutP PF10662.4 gi|410670535|ref|YP_006922906.1| - 5.6e-05 22.6 0.8 0.095 12.1 0.0 2.4 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|410670535|ref|YP_006922906.1| - 0.00011 21.8 0.3 0.18 11.5 0.0 2.6 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|410670535|ref|YP_006922906.1| - 0.00012 21.3 1.1 0.16 11.2 0.0 3.8 2 2 1 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|410670535|ref|YP_006922906.1| - 0.00033 20.3 0.6 0.82 9.4 0.1 3.2 3 0 0 3 3 3 1 Part of AAA domain AAA_30 PF13604.1 gi|410670535|ref|YP_006922906.1| - 0.00035 20.1 0.7 1.2 8.7 0.1 2.8 3 0 0 3 3 3 2 AAA domain Arch_ATPase PF01637.13 gi|410670535|ref|YP_006922906.1| - 0.00042 20.0 0.5 0.11 12.1 0.0 2.7 2 0 0 2 2 2 1 Archaeal ATPase NACHT PF05729.7 gi|410670535|ref|YP_006922906.1| - 0.00048 19.8 4.7 0.25 11.0 0.2 2.6 2 0 0 2 2 2 2 NACHT domain PRK PF00485.13 gi|410670535|ref|YP_006922906.1| - 0.00052 19.6 0.0 0.16 11.5 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family cobW PF02492.14 gi|410670535|ref|YP_006922906.1| - 0.00068 19.1 2.5 0.47 9.8 0.2 2.5 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain ATP-synt_ab PF00006.20 gi|410670535|ref|YP_006922906.1| - 0.00073 19.0 0.2 1 8.7 0.0 2.3 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_28 PF13521.1 gi|410670535|ref|YP_006922906.1| - 0.0013 18.6 0.1 1.1 9.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain Miro PF08477.8 gi|410670535|ref|YP_006922906.1| - 0.0014 19.0 2.4 1.8 9.1 0.0 3.1 4 0 0 4 4 2 2 Miro-like protein NB-ARC PF00931.17 gi|410670535|ref|YP_006922906.1| - 0.0014 17.5 0.5 0.74 8.6 0.1 2.3 2 0 0 2 2 2 2 NB-ARC domain G-alpha PF00503.15 gi|410670535|ref|YP_006922906.1| - 0.0022 16.7 0.1 0.16 10.5 0.0 2.2 2 0 0 2 2 2 1 G-protein alpha subunit T2SE PF00437.15 gi|410670535|ref|YP_006922906.1| - 0.0032 16.4 0.5 0.14 11.0 0.1 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|410670535|ref|YP_006922906.1| - 0.0034 17.1 2.8 0.27 10.9 0.1 3.2 3 0 0 3 3 3 1 NTPase AAA_33 PF13671.1 gi|410670535|ref|YP_006922906.1| - 0.0037 17.1 0.2 2.3 8.0 0.0 2.7 2 0 0 2 2 2 1 AAA domain Pox_A32 PF04665.7 gi|410670535|ref|YP_006922906.1| - 0.0038 16.5 1.9 1.4 8.1 0.2 2.5 2 0 0 2 2 2 2 Poxvirus A32 protein AAA_14 PF13173.1 gi|410670535|ref|YP_006922906.1| - 0.0048 16.7 0.9 4.7 7.1 0.1 3.0 3 0 0 3 3 2 0 AAA domain PhoH PF02562.11 gi|410670535|ref|YP_006922906.1| - 0.0094 15.1 0.3 4.5 6.4 0.0 2.6 2 0 0 2 2 2 0 PhoH-like protein Zeta_toxin PF06414.7 gi|410670535|ref|YP_006922906.1| - 0.0095 15.0 1.4 0.65 9.0 0.1 2.5 2 0 0 2 2 2 1 Zeta toxin MMR_HSR1 PF01926.18 gi|410670535|ref|YP_006922906.1| - 0.01 15.7 0.1 5.1 7.0 0.0 2.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA PF00004.24 gi|410670535|ref|YP_006922906.1| - 0.01 16.0 0.7 17 5.6 0.0 3.6 4 0 0 4 4 3 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|410670535|ref|YP_006922906.1| - 0.011 15.3 4.5 0.98 8.9 0.1 2.7 3 0 0 3 3 2 0 AAA domain KAP_NTPase PF07693.9 gi|410670535|ref|YP_006922906.1| - 0.014 14.3 0.1 0.24 10.3 0.0 2.2 2 0 0 2 2 2 0 KAP family P-loop domain IstB_IS21 PF01695.12 gi|410670535|ref|YP_006922906.1| - 0.018 14.4 0.2 0.84 9.0 0.0 2.9 3 0 0 3 3 3 0 IstB-like ATP binding protein KaiC PF06745.8 gi|410670535|ref|YP_006922906.1| - 0.021 13.9 2.6 4.5 6.3 0.1 3.2 3 0 0 3 3 3 0 KaiC Dynamin_N PF00350.18 gi|410670535|ref|YP_006922906.1| - 0.031 14.1 0.0 9.5 6.0 0.0 2.4 2 0 0 2 2 2 0 Dynamin family Mg_chelatase PF01078.16 gi|410670535|ref|YP_006922906.1| - 0.034 13.2 0.0 3.8 6.6 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ArgK PF03308.11 gi|410670535|ref|YP_006922906.1| - 0.039 12.7 0.5 0.28 9.9 0.1 2.1 2 0 0 2 2 2 0 ArgK protein APS_kinase PF01583.15 gi|410670535|ref|YP_006922906.1| - 0.051 13.2 0.5 2.5 7.7 0.1 2.5 2 0 0 2 2 2 0 Adenylylsulphate kinase DUF87 PF01935.12 gi|410670535|ref|YP_006922906.1| - 0.061 13.1 5.4 1.1 9.0 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 ABC_ATPase PF09818.4 gi|410670535|ref|YP_006922906.1| - 0.17 10.4 7.3 0.88 8.0 0.1 2.9 4 0 0 4 4 3 0 Predicted ATPase of the ABC class Phasin PF05597.6 gi|410670536|ref|YP_006922907.1| - 1e-05 25.2 5.3 0.00015 21.5 3.6 2.1 1 1 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) BMFP PF04380.8 gi|410670536|ref|YP_006922907.1| - 0.0032 17.5 6.2 0.0046 17.0 4.3 1.4 1 0 0 1 1 1 1 Membrane fusogenic activity TSC22 PF01166.13 gi|410670536|ref|YP_006922907.1| - 0.025 14.5 6.4 0.15 12.0 0.2 2.6 2 0 0 2 2 2 0 TSC-22/dip/bun family YebO PF13974.1 gi|410670536|ref|YP_006922907.1| - 0.039 13.7 0.9 0.077 12.7 0.7 1.6 1 0 0 1 1 1 0 YebO-like protein PRESAN PF09687.5 gi|410670536|ref|YP_006922907.1| - 0.045 13.8 4.0 0.06 13.4 2.4 1.5 1 1 1 2 2 2 0 Plasmodium RESA N-terminal NusB PF01029.13 gi|410670536|ref|YP_006922907.1| - 0.065 13.2 2.2 0.062 13.2 0.8 1.5 1 1 1 2 2 2 0 NusB family DUF87 PF01935.12 gi|410670536|ref|YP_006922907.1| - 0.076 12.8 4.0 0.089 12.6 2.8 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF87 Helicase_IV_N PF12462.3 gi|410670536|ref|YP_006922907.1| - 0.09 12.4 0.8 0.11 12.1 0.6 1.1 1 0 0 1 1 1 0 DNA helicase IV / RNA helicase N terminal adh_short PF00106.20 gi|410670536|ref|YP_006922907.1| - 0.14 12.0 0.1 0.19 11.6 0.1 1.2 1 0 0 1 1 1 0 short chain dehydrogenase PP2C_C PF07830.8 gi|410670536|ref|YP_006922907.1| - 0.24 11.5 3.6 0.2 11.7 0.9 2.0 1 1 1 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain Anoctamin PF04547.7 gi|410670536|ref|YP_006922907.1| - 0.25 9.9 0.8 0.3 9.6 0.6 1.1 1 0 0 1 1 1 0 Calcium-activated chloride channel DUF3303 PF11746.3 gi|410670538|ref|YP_006922909.1| - 7.1e-10 39.1 0.0 8e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3303) DUF128 PF01995.11 gi|410670540|ref|YP_006922911.1| - 3.8e-85 284.5 0.4 4.6e-85 284.3 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF128 HTH_12 PF08461.5 gi|410670540|ref|YP_006922911.1| - 8.1e-31 105.5 0.6 4.5e-30 103.1 0.9 1.9 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain Ribosomal_S19e PF01090.14 gi|410670540|ref|YP_006922911.1| - 0.053 12.9 0.0 0.098 12.0 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S19e N6_N4_Mtase PF01555.13 gi|410670541|ref|YP_006922912.1| - 3.6e-31 108.4 0.1 5.6e-31 107.8 0.1 1.3 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|410670541|ref|YP_006922912.1| - 0.0003 20.7 0.0 0.0056 16.7 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Ammonium_transp PF00909.16 gi|410670542|ref|YP_006922913.1| - 3.8e-120 401.0 40.5 4.9e-120 400.6 28.1 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family XhlA PF10779.4 gi|410670542|ref|YP_006922913.1| - 0.86 9.5 0.0 0.86 9.5 0.0 2.2 2 0 0 2 2 2 0 Haemolysin XhlA P-II PF00543.17 gi|410670543|ref|YP_006922914.1| - 7.9e-40 135.4 2.6 8.8e-40 135.3 1.8 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II FMN_red PF03358.10 gi|410670544|ref|YP_006922915.1| - 1.7e-22 79.5 0.0 2.3e-22 79.1 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|410670544|ref|YP_006922915.1| - 3.7e-12 46.1 0.0 5.5e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|410670544|ref|YP_006922915.1| - 0.13 12.2 0.0 0.64 10.0 0.0 2.0 2 0 0 2 2 2 0 Flavodoxin domain Response_reg PF00072.19 gi|410670545|ref|YP_006922916.1| - 3.6e-26 91.3 1.1 7.4e-26 90.3 0.4 1.9 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.21 gi|410670545|ref|YP_006922916.1| - 2.1e-23 82.1 0.1 3.6e-23 81.4 0.1 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|410670545|ref|YP_006922916.1| - 8e-09 35.8 0.1 2.7e-08 34.0 0.0 1.9 2 0 0 2 2 2 1 PAS domain HisKA PF00512.20 gi|410670545|ref|YP_006922916.1| - 1.8e-07 31.0 0.3 4e-07 29.9 0.2 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|410670545|ref|YP_006922916.1| - 8.1e-07 29.0 0.0 1.4e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|410670545|ref|YP_006922916.1| - 5.9e-05 22.8 0.0 0.00011 21.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.19 gi|410670545|ref|YP_006922916.1| - 0.00052 19.7 0.1 0.0022 17.7 0.0 2.2 2 1 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|410670545|ref|YP_006922916.1| - 0.0012 18.4 0.2 0.0029 17.2 0.2 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|410670545|ref|YP_006922916.1| - 0.002 17.7 0.0 0.0048 16.5 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.1 gi|410670545|ref|YP_006922916.1| - 0.0096 15.7 0.0 0.031 14.1 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_11 PF14598.1 gi|410670545|ref|YP_006922916.1| - 0.038 13.9 0.0 0.087 12.7 0.0 1.6 1 0 0 1 1 1 0 PAS domain Latarcin PF10279.4 gi|410670545|ref|YP_006922916.1| - 0.41 10.8 3.2 3.2 8.0 2.2 2.2 1 1 0 1 1 1 0 Latarcin precursor Fer4_NifH PF00142.13 gi|410670546|ref|YP_006922917.1| - 4.8e-115 383.4 0.5 5.3e-115 383.2 0.3 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family P-II PF00543.17 gi|410670547|ref|YP_006922918.1| - 2.3e-33 114.7 1.2 2.6e-33 114.5 0.8 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF970 PF06153.6 gi|410670547|ref|YP_006922918.1| - 0.019 14.8 0.2 0.39 10.7 0.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF970) DUF2179 PF10035.4 gi|410670547|ref|YP_006922918.1| - 0.036 13.6 0.9 0.52 9.9 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2179) P-II PF00543.17 gi|410670548|ref|YP_006922919.1| - 7.5e-30 103.4 0.0 9.7e-30 103.0 0.0 1.1 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Oxidored_nitro PF00148.14 gi|410670549|ref|YP_006922920.1| - 6.1e-138 459.7 0.1 1.1e-137 458.9 0.1 1.4 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase 2-Hacid_dh_C PF02826.14 gi|410670549|ref|YP_006922920.1| - 0.094 11.8 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Oxidored_nitro PF00148.14 gi|410670550|ref|YP_006922921.1| - 2.3e-120 401.8 0.1 2.6e-120 401.6 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.14 gi|410670551|ref|YP_006922922.1| - 2.4e-124 415.0 0.2 2.8e-124 414.7 0.1 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Glyco_transf_4 PF13439.1 gi|410670551|ref|YP_006922922.1| - 0.03 14.0 0.0 0.088 12.5 0.0 1.7 3 0 0 3 3 3 0 Glycosyltransferase Family 4 TPP_enzyme_N PF02776.13 gi|410670551|ref|YP_006922922.1| - 0.07 12.6 0.0 0.72 9.3 0.0 2.4 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Glyco_trans_4_2 PF13477.1 gi|410670551|ref|YP_006922922.1| - 0.16 11.8 0.0 0.57 10.0 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase 4-like Oxidored_nitro PF00148.14 gi|410670552|ref|YP_006922923.1| - 3e-122 408.1 0.0 3.4e-122 407.9 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Abhydrolase_6 PF12697.2 gi|410670552|ref|YP_006922923.1| - 0.079 12.8 0.1 0.26 11.1 0.0 1.8 2 0 0 2 2 2 0 Alpha/beta hydrolase family Nitroreductase PF00881.19 gi|410670553|ref|YP_006922924.1| - 6.3e-36 123.6 0.0 7.4e-36 123.4 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|410670553|ref|YP_006922924.1| - 0.00072 18.7 0.1 0.7 9.0 0.0 2.2 1 1 0 2 2 2 2 Putative TM nitroreductase FeThRed_B PF02943.10 gi|410670554|ref|YP_006922925.1| - 4.7e-14 52.0 0.7 5.5e-14 51.8 0.5 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain Glutaredoxin PF00462.19 gi|410670555|ref|YP_006922926.1| - 2.3e-07 30.6 0.4 3.8e-07 29.9 0.2 1.4 1 0 0 1 1 1 1 Glutaredoxin LacI PF00356.16 gi|410670555|ref|YP_006922926.1| - 0.016 14.8 0.0 0.31 10.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family GST_N_3 PF13417.1 gi|410670555|ref|YP_006922926.1| - 0.027 14.6 0.0 0.041 14.0 0.0 1.4 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain ArsC PF03960.10 gi|410670555|ref|YP_006922926.1| - 0.051 13.6 1.3 0.69 10.0 0.1 2.5 2 1 1 3 3 3 0 ArsC family Thioredoxin_2 PF13098.1 gi|410670555|ref|YP_006922926.1| - 0.061 13.5 0.3 0.097 12.8 0.2 1.4 1 1 0 1 1 1 0 Thioredoxin-like domain Glutaredoxin PF00462.19 gi|410670556|ref|YP_006922927.1| - 9.3e-12 44.7 0.2 1.2e-11 44.3 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|410670556|ref|YP_006922927.1| - 4.1e-06 26.9 0.0 4.7e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain ArsC PF03960.10 gi|410670556|ref|YP_006922927.1| - 0.0007 19.6 0.1 0.0036 17.3 0.0 1.8 1 1 1 2 2 2 1 ArsC family GST_N_2 PF13409.1 gi|410670556|ref|YP_006922927.1| - 0.00071 19.5 0.0 0.00071 19.5 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF1462 PF07315.6 gi|410670556|ref|YP_006922927.1| - 0.013 15.4 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1462) Rieske PF00355.21 gi|410670557|ref|YP_006922928.1| - 1e-18 66.6 0.0 1.2e-18 66.4 0.0 1.0 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|410670557|ref|YP_006922928.1| - 2.7e-16 59.1 0.0 3e-16 59.0 0.0 1.0 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Rieske PF00355.21 gi|410670558|ref|YP_006922929.1| - 3.2e-17 61.8 0.1 3.5e-17 61.7 0.0 1.0 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|410670558|ref|YP_006922929.1| - 6.3e-07 29.0 0.0 7.5e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain DUF4182 PF13790.1 gi|410670558|ref|YP_006922929.1| - 0.14 11.9 0.1 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4182) MatE PF01554.13 gi|410670559|ref|YP_006922930.1| - 4.4e-50 169.4 35.0 1.9e-26 92.6 11.0 2.2 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|410670559|ref|YP_006922930.1| - 2.6e-09 37.0 41.9 8.7e-07 28.8 9.5 4.5 4 2 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|410670559|ref|YP_006922930.1| - 0.58 9.5 39.4 0.03 13.7 11.1 3.0 1 1 2 3 3 3 0 Polysaccharide biosynthesis protein MarR PF01047.17 gi|410670560|ref|YP_006922931.1| - 1.6e-15 56.5 0.0 3.2e-15 55.5 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|410670560|ref|YP_006922931.1| - 6.1e-10 38.6 0.2 1.1e-09 37.8 0.1 1.5 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|410670560|ref|YP_006922931.1| - 1.4e-06 27.5 0.1 7.5e-06 25.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|410670560|ref|YP_006922931.1| - 5.2e-06 26.7 0.1 1.3e-05 25.4 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|410670560|ref|YP_006922931.1| - 5.3e-05 22.9 0.0 9.7e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|410670560|ref|YP_006922931.1| - 0.00015 21.3 0.0 0.019 14.6 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|410670560|ref|YP_006922931.1| - 0.0043 17.0 0.0 0.0067 16.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|410670560|ref|YP_006922931.1| - 0.0043 16.6 0.1 0.0084 15.7 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|410670560|ref|YP_006922931.1| - 0.0052 16.3 0.1 0.0094 15.5 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|410670560|ref|YP_006922931.1| - 0.0071 15.7 0.0 0.018 14.4 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 Fe_dep_repress PF01325.14 gi|410670560|ref|YP_006922931.1| - 0.0076 16.1 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|410670560|ref|YP_006922931.1| - 0.01 15.4 0.0 0.022 14.4 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_36 PF13730.1 gi|410670560|ref|YP_006922931.1| - 0.012 15.7 0.0 0.022 14.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|410670560|ref|YP_006922931.1| - 0.017 14.6 0.0 0.057 12.9 0.0 1.8 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain GntR PF00392.16 gi|410670560|ref|YP_006922931.1| - 0.023 14.1 0.1 0.042 13.2 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HxlR PF01638.12 gi|410670560|ref|YP_006922931.1| - 0.027 14.1 0.0 0.053 13.1 0.0 1.4 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_28 PF13518.1 gi|410670560|ref|YP_006922931.1| - 0.06 13.3 0.2 0.13 12.3 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|410670560|ref|YP_006922931.1| - 0.075 12.8 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|410670560|ref|YP_006922931.1| - 0.12 12.2 0.0 0.5 10.2 0.0 1.9 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC HTH_AsnC-type PF13404.1 gi|410670560|ref|YP_006922931.1| - 0.29 10.7 0.2 0.29 10.7 0.1 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Transglut_core PF01841.14 gi|410670561|ref|YP_006922932.1| - 0.0062 16.7 0.1 0.02 15.0 0.1 1.9 1 1 0 1 1 1 1 Transglutaminase-like superfamily MacB_PCD PF12704.2 gi|410670562|ref|YP_006922933.1| - 2.7e-42 144.9 4.0 2.7e-42 144.9 2.8 2.8 3 0 0 3 3 3 2 MacB-like periplasmic core domain FtsX PF02687.16 gi|410670562|ref|YP_006922933.1| - 2.2e-24 85.5 16.4 8.3e-24 83.6 8.2 2.2 2 0 0 2 2 2 2 FtsX-like permease family Ras_bdg_2 PF14847.1 gi|410670562|ref|YP_006922933.1| - 0.096 12.6 2.4 0.076 12.9 0.5 1.7 2 0 0 2 2 2 0 Ras-binding domain of Byr2 DUF4134 PF13572.1 gi|410670562|ref|YP_006922933.1| - 1.3 9.1 14.6 0.41 10.7 0.4 3.8 3 1 1 4 4 4 0 Domain of unknown function (DUF4134) NPCBM_assoc PF10633.4 gi|410670563|ref|YP_006922934.1| - 2.2e-08 34.0 11.9 0.03 14.3 0.3 5.2 4 2 0 4 4 4 3 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|410670563|ref|YP_006922934.1| - 6.1e-07 29.4 7.2 1.3e-05 25.1 0.3 3.8 3 0 0 3 3 3 1 Domain of unknown function DUF11 CARDB PF07705.6 gi|410670563|ref|YP_006922934.1| - 2.2e-05 24.4 14.8 0.094 12.7 0.5 4.2 2 1 2 4 4 4 3 CARDB DUF1900 PF08954.6 gi|410670563|ref|YP_006922934.1| - 0.039 13.4 0.5 1.3 8.5 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1900) DUF2393 PF09624.5 gi|410670563|ref|YP_006922934.1| - 0.15 11.5 2.8 0.57 9.7 0.1 3.0 2 1 0 3 3 3 0 Protein of unknown function (DUF2393) TRP_N PF14558.1 gi|410670563|ref|YP_006922934.1| - 0.2 11.6 2.7 0.2 11.6 0.2 2.3 2 1 0 2 2 2 0 ML-like domain DUF1081 PF06448.6 gi|410670563|ref|YP_006922934.1| - 0.6 10.0 5.1 1.9 8.3 0.6 3.0 2 1 1 3 3 3 0 Domain of Unknown Function (DUF1081) DUF1290 PF06947.7 gi|410670564|ref|YP_006922935.1| - 0.12 12.2 0.1 0.14 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1290) ABC_tran PF00005.22 gi|410670565|ref|YP_006922936.1| - 1.6e-33 115.9 0.0 2.7e-33 115.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410670565|ref|YP_006922936.1| - 4.7e-12 46.4 0.5 1e-09 38.7 0.4 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|410670565|ref|YP_006922936.1| - 2.9e-08 33.2 0.2 2.1e-07 30.4 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|410670565|ref|YP_006922936.1| - 3.3e-06 26.4 0.3 0.0026 16.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|410670565|ref|YP_006922936.1| - 2.8e-05 23.5 0.0 5.2e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|410670565|ref|YP_006922936.1| - 0.00014 21.1 0.0 0.0002 20.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|410670565|ref|YP_006922936.1| - 0.00014 21.3 0.1 0.0005 19.5 0.1 1.8 2 0 0 2 2 2 1 AAA-like domain AAA_23 PF13476.1 gi|410670565|ref|YP_006922936.1| - 0.00082 19.7 0.2 0.0019 18.5 0.1 1.6 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|410670565|ref|YP_006922936.1| - 0.0011 18.7 0.0 0.0043 16.7 0.0 1.8 2 0 0 2 2 2 1 Archaeal ATPase AAA_16 PF13191.1 gi|410670565|ref|YP_006922936.1| - 0.0011 19.0 0.2 0.002 18.1 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|410670565|ref|YP_006922936.1| - 0.0011 19.1 0.1 0.028 14.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|410670565|ref|YP_006922936.1| - 0.0019 18.5 0.2 0.24 11.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|410670565|ref|YP_006922936.1| - 0.0023 17.5 0.0 0.097 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|410670565|ref|YP_006922936.1| - 0.0046 16.3 0.0 0.021 14.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|410670565|ref|YP_006922936.1| - 0.0053 17.5 0.1 0.013 16.3 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|410670565|ref|YP_006922936.1| - 0.012 15.3 0.0 0.074 12.8 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_14 PF13173.1 gi|410670565|ref|YP_006922936.1| - 0.016 15.1 0.0 0.052 13.4 0.0 1.9 2 1 0 2 2 1 0 AAA domain MMR_HSR1 PF01926.18 gi|410670565|ref|YP_006922936.1| - 0.025 14.5 0.8 0.049 13.5 0.5 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_13 PF13166.1 gi|410670565|ref|YP_006922936.1| - 0.026 13.0 0.4 1.5 7.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|410670565|ref|YP_006922936.1| - 0.04 13.6 0.2 8.1 6.1 0.0 2.2 2 0 0 2 2 2 0 NTPase RNA12 PF10443.4 gi|410670565|ref|YP_006922936.1| - 0.048 12.1 0.0 0.075 11.5 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein AAA_33 PF13671.1 gi|410670565|ref|YP_006922936.1| - 0.05 13.4 0.0 0.093 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|410670565|ref|YP_006922936.1| - 0.05 13.0 0.0 0.22 10.9 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein T2SE PF00437.15 gi|410670565|ref|YP_006922936.1| - 0.07 12.0 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA_helicase PF00910.17 gi|410670565|ref|YP_006922936.1| - 0.12 12.5 0.0 0.29 11.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.7 gi|410670565|ref|YP_006922936.1| - 0.13 11.9 0.1 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|410670565|ref|YP_006922936.1| - 0.15 11.9 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rho_RNA_bind PF07497.7 gi|410670566|ref|YP_006922937.1| - 0.1 12.2 0.0 0.1 12.2 0.0 1.1 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain HTH_24 PF13412.1 gi|410670567|ref|YP_006922938.1| - 0.00024 20.4 0.9 0.00044 19.5 0.6 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FeoC PF09012.5 gi|410670567|ref|YP_006922938.1| - 0.0004 20.0 0.4 0.00075 19.1 0.2 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator CarboxypepD_reg PF13620.1 gi|410670567|ref|YP_006922938.1| - 0.0056 16.7 0.1 0.015 15.3 0.1 1.8 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain MarR PF01047.17 gi|410670567|ref|YP_006922938.1| - 0.011 15.3 0.1 0.024 14.3 0.1 1.4 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.2 gi|410670567|ref|YP_006922938.1| - 0.055 13.1 0.0 0.096 12.3 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF4480 PF13715.1 gi|410670567|ref|YP_006922938.1| - 0.067 13.2 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4480) DUF4493 PF14900.1 gi|410670567|ref|YP_006922938.1| - 0.079 12.5 0.2 0.14 11.7 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4493) DUF3680 PF12441.3 gi|410670571|ref|YP_006922942.1| - 0.00011 22.0 10.5 0.061 13.1 1.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF3680) Amidohydro_1 PF01979.15 gi|410670571|ref|YP_006922942.1| - 0.16 11.6 2.1 0.43 10.1 1.4 1.8 1 1 0 1 1 1 0 Amidohydrolase family Rif1_N PF12231.3 gi|410670571|ref|YP_006922942.1| - 0.37 9.6 2.8 0.19 10.6 0.2 1.7 2 0 0 2 2 2 0 Rap1-interacting factor 1 N terminal Laminin_B PF00052.13 gi|410670571|ref|YP_006922942.1| - 1.1 8.8 4.5 0.92 9.1 0.1 2.1 2 0 0 2 2 2 0 Laminin B (Domain IV) DUF4559 PF15112.1 gi|410670571|ref|YP_006922942.1| - 2.2 7.3 14.5 0.45 9.6 6.7 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) Nup54 PF13874.1 gi|410670571|ref|YP_006922942.1| - 2.2 7.9 8.7 0.31 10.7 0.8 2.5 2 1 0 2 2 2 0 Nucleoporin complex subunit 54 CENP-Q PF13094.1 gi|410670571|ref|YP_006922942.1| - 4.9 7.1 14.8 1.7 8.6 1.2 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Adeno_PIX PF03955.9 gi|410670571|ref|YP_006922942.1| - 5 7.6 7.1 2.9 8.4 0.4 2.4 2 1 0 2 2 2 0 Adenovirus hexon-associated protein (IX) DUF2374 PF09574.5 gi|410670573|ref|YP_006922944.1| - 0.11 12.1 2.0 0.24 11.0 1.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (Duf2374) Gln-synt_C PF00120.19 gi|410670574|ref|YP_006922945.1| - 1.1e-96 322.9 0.0 1.4e-96 322.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|410670574|ref|YP_006922945.1| - 4.4e-31 106.3 0.1 9.1e-31 105.2 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Acetyltransf_1 PF00583.19 gi|410670575|ref|YP_006922946.1| - 3.8e-18 65.2 0.0 6.1e-18 64.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|410670575|ref|YP_006922946.1| - 4.4e-12 45.9 0.1 7.9e-12 45.1 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|410670575|ref|YP_006922946.1| - 4.7e-08 33.1 0.0 6.6e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|410670575|ref|YP_006922946.1| - 1.8e-07 31.2 0.0 2.5e-07 30.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|410670575|ref|YP_006922946.1| - 3.5e-07 29.8 0.0 6.4e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|410670575|ref|YP_006922946.1| - 4.1e-06 26.6 0.0 9.8e-06 25.4 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|410670575|ref|YP_006922946.1| - 0.00013 22.1 0.0 0.00015 21.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|410670575|ref|YP_006922946.1| - 0.009 15.9 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Gly_acyl_tr_C PF08444.5 gi|410670575|ref|YP_006922946.1| - 0.082 12.9 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region FrhB_FdhB_C PF04432.8 gi|410670576|ref|YP_006922947.1| - 1.4e-36 125.3 1.1 2.9e-36 124.2 0.0 1.9 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|410670576|ref|YP_006922947.1| - 1.1e-20 73.2 0.0 1.9e-20 72.5 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_10 PF13237.1 gi|410670576|ref|YP_006922947.1| - 1.4e-06 27.9 8.4 1.4e-06 27.9 5.8 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410670576|ref|YP_006922947.1| - 2.5e-06 27.6 8.1 2.5e-06 27.6 5.6 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|410670576|ref|YP_006922947.1| - 2.9e-06 26.6 4.3 2.9e-06 26.6 3.0 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|410670576|ref|YP_006922947.1| - 2.6e-05 24.4 11.0 2.6e-05 24.4 7.6 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410670576|ref|YP_006922947.1| - 4.8e-05 23.0 3.6 4.8e-05 23.0 2.5 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|410670576|ref|YP_006922947.1| - 0.00043 20.9 16.0 0.0092 16.7 8.9 3.3 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|410670576|ref|YP_006922947.1| - 0.001 19.4 10.1 0.016 15.6 0.6 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|410670576|ref|YP_006922947.1| - 0.0016 18.3 22.8 0.0038 17.2 8.2 2.6 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410670576|ref|YP_006922947.1| - 0.0017 18.1 4.4 0.0017 18.1 3.1 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|410670576|ref|YP_006922947.1| - 0.0035 17.5 19.7 0.0065 16.7 1.7 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|410670576|ref|YP_006922947.1| - 0.018 15.3 7.8 0.43 11.0 1.5 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|410670576|ref|YP_006922947.1| - 0.03 14.8 3.6 0.55 10.8 1.0 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|410670576|ref|YP_006922947.1| - 0.17 11.7 16.8 0.073 12.9 1.8 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|410670576|ref|YP_006922947.1| - 0.44 10.4 5.7 12 5.9 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410670576|ref|YP_006922947.1| - 2.3 8.6 17.3 0.17 12.2 1.8 2.8 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|410670576|ref|YP_006922947.1| - 6.5 7.5 29.3 0.27 11.9 6.4 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain GXGXG PF01493.14 gi|410670577|ref|YP_006922948.1| - 1.1e-35 122.4 12.1 1.3e-35 122.2 8.4 1.0 1 0 0 1 1 1 1 GXGXG motif Glu_synthase PF01645.12 gi|410670578|ref|YP_006922949.1| - 1.4e-134 448.6 0.0 2.4e-134 447.9 0.0 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|410670578|ref|YP_006922949.1| - 3.8e-11 42.4 5.5 4.8e-08 32.2 1.4 3.2 3 0 0 3 3 3 2 FMN-dependent dehydrogenase Fer4_10 PF13237.1 gi|410670578|ref|YP_006922949.1| - 1.5e-10 40.6 23.2 4.4e-07 29.6 9.6 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain IMPDH PF00478.20 gi|410670578|ref|YP_006922949.1| - 5.3e-10 38.7 0.2 1.2e-07 30.9 0.8 2.9 2 1 1 3 3 3 1 IMP dehydrogenase / GMP reductase domain Glu_syn_central PF04898.9 gi|410670578|ref|YP_006922949.1| - 5.8e-10 38.9 0.1 6.1e-05 22.4 0.0 2.5 2 1 0 2 2 2 2 Glutamate synthase central domain Fer4_7 PF12838.2 gi|410670578|ref|YP_006922949.1| - 8.4e-10 38.8 15.8 4.8e-08 33.2 7.6 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|410670578|ref|YP_006922949.1| - 3.8e-08 32.5 19.4 5.2e-06 25.8 0.6 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain NMO PF03060.10 gi|410670578|ref|YP_006922949.1| - 4.9e-08 32.5 5.2 1.9e-07 30.5 1.6 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase Fer4_9 PF13187.1 gi|410670578|ref|YP_006922949.1| - 7e-08 32.6 18.6 1.2e-07 31.8 8.2 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410670578|ref|YP_006922949.1| - 2.5e-07 31.3 12.0 3.7e-05 24.3 0.2 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|410670578|ref|YP_006922949.1| - 3e-06 26.8 23.1 1.4e-05 24.6 1.9 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|410670578|ref|YP_006922949.1| - 4.4e-06 26.9 7.0 0.047 14.0 0.1 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410670578|ref|YP_006922949.1| - 7.5e-06 25.7 11.0 7.5e-06 25.7 7.6 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410670578|ref|YP_006922949.1| - 1.7e-05 24.4 23.3 0.00017 21.3 1.8 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|410670578|ref|YP_006922949.1| - 6.7e-05 22.8 16.3 0.041 13.9 1.7 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain His_biosynth PF00977.16 gi|410670578|ref|YP_006922949.1| - 0.00063 19.0 0.4 0.0023 17.2 0.2 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|410670578|ref|YP_006922949.1| - 0.002 17.1 2.7 0.015 14.2 1.9 2.0 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase Fer4_11 PF13247.1 gi|410670578|ref|YP_006922949.1| - 0.0042 16.9 6.1 0.0042 16.9 4.3 2.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain PcrB PF01884.12 gi|410670578|ref|YP_006922949.1| - 0.024 13.9 1.4 0.54 9.4 0.5 2.4 2 1 1 3 3 3 0 PcrB family Fer4_4 PF12800.2 gi|410670578|ref|YP_006922949.1| - 0.035 14.4 2.5 0.035 14.4 1.8 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|410670578|ref|YP_006922949.1| - 1.4 9.5 21.4 1.7 9.2 8.3 3.3 2 1 1 3 3 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|410670578|ref|YP_006922949.1| - 4.9 7.6 22.8 1.7 9.1 2.8 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain GATase_2 PF00310.16 gi|410670579|ref|YP_006922950.1| - 5.8e-24 84.4 0.0 3.4e-22 78.6 0.0 2.0 2 0 0 2 2 2 2 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|410670579|ref|YP_006922950.1| - 1.5e-19 70.2 0.0 3.6e-18 65.8 0.0 2.1 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|410670579|ref|YP_006922950.1| - 2.8e-12 46.4 0.0 4.9e-11 42.4 0.0 2.2 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|410670579|ref|YP_006922950.1| - 0.09 11.4 0.0 0.15 10.7 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II Gln-synt_C PF00120.19 gi|410670580|ref|YP_006922951.1| - 2.2e-100 335.0 0.0 2.9e-100 334.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|410670580|ref|YP_006922951.1| - 9.4e-30 102.0 0.0 2e-29 100.9 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Bmp PF02608.9 gi|410670580|ref|YP_006922951.1| - 0.002 16.9 0.1 0.003 16.3 0.1 1.2 1 0 0 1 1 1 1 Basic membrane protein Fer4_8 PF13183.1 gi|410670581|ref|YP_006922952.1| - 4.1e-13 49.1 9.3 6.9e-13 48.4 6.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410670581|ref|YP_006922952.1| - 2.4e-09 37.4 9.3 3.7e-09 36.7 6.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410670581|ref|YP_006922952.1| - 3e-06 26.9 11.3 4.8e-06 26.2 7.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410670581|ref|YP_006922952.1| - 4.7e-06 26.7 12.1 7.3e-06 26.1 7.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410670581|ref|YP_006922952.1| - 1.1e-05 25.7 12.8 1.6e-05 25.1 8.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410670581|ref|YP_006922952.1| - 7.1e-05 22.5 9.8 0.00013 21.6 6.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|410670581|ref|YP_006922952.1| - 0.00015 22.0 15.4 0.0002 21.7 1.1 2.5 2 1 1 3 3 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|410670581|ref|YP_006922952.1| - 0.00041 19.8 15.5 0.025 14.1 3.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|410670581|ref|YP_006922952.1| - 0.0017 18.1 13.8 0.22 11.5 0.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|410670581|ref|YP_006922952.1| - 0.015 14.8 6.3 0.34 10.5 0.3 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DUF678 PF05077.7 gi|410670581|ref|YP_006922952.1| - 0.03 14.3 5.8 0.99 9.4 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF678) DUF1247 PF06851.6 gi|410670581|ref|YP_006922952.1| - 0.096 12.3 0.5 1.4 8.6 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1247) Fer4_16 PF13484.1 gi|410670581|ref|YP_006922952.1| - 0.22 12.3 16.3 3.3 8.5 10.3 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|410670581|ref|YP_006922952.1| - 0.5 11.0 15.7 0.32 11.6 1.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|410670581|ref|YP_006922952.1| - 1.7 9.1 16.3 1.7 9.1 3.8 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|410670581|ref|YP_006922952.1| - 3.1 8.4 8.3 8.6 7.0 1.5 2.5 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|410670581|ref|YP_006922952.1| - 5.1 7.5 10.8 5.2 7.5 1.4 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|410670581|ref|YP_006922952.1| - 6.3 6.8 11.5 1.2 9.1 0.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain CCG PF02754.11 gi|410670582|ref|YP_006922953.1| - 1.5e-34 117.8 2.9 1.5e-19 69.7 0.2 2.2 2 0 0 2 2 2 2 Cysteine-rich domain Prok-RING_4 PF14447.1 gi|410670582|ref|YP_006922953.1| - 0.064 12.8 1.6 0.1 12.1 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 Acetyltransf_1 PF00583.19 gi|410670583|ref|YP_006922954.1| - 1e-13 51.1 0.0 1.4e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|410670583|ref|YP_006922954.1| - 1.2e-13 51.0 0.0 1.7e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|410670583|ref|YP_006922954.1| - 5.6e-10 39.3 0.0 7.2e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|410670583|ref|YP_006922954.1| - 4.2e-09 36.3 0.0 1.2e-08 34.9 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|410670583|ref|YP_006922954.1| - 4.6e-09 36.4 0.0 8.6e-09 35.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|410670583|ref|YP_006922954.1| - 2.2e-06 27.4 0.0 3.3e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|410670583|ref|YP_006922954.1| - 2.2e-05 24.6 0.0 3.2e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|410670583|ref|YP_006922954.1| - 0.0032 17.4 0.0 0.0042 17.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|410670583|ref|YP_006922954.1| - 0.16 11.7 0.0 0.3 10.8 0.0 1.5 1 1 0 1 1 1 0 FR47-like protein Acetyltransf_1 PF00583.19 gi|410670584|ref|YP_006922955.1| - 2.7e-11 43.3 0.1 3.9e-11 42.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|410670584|ref|YP_006922955.1| - 3.1e-10 40.2 0.0 3.7e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|410670584|ref|YP_006922955.1| - 1.4e-07 31.5 0.0 2e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|410670584|ref|YP_006922955.1| - 5.7e-07 29.5 0.0 6.8e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|410670584|ref|YP_006922955.1| - 4e-05 23.4 0.0 6.4e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|410670584|ref|YP_006922955.1| - 0.0014 18.1 0.0 0.0017 17.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|410670584|ref|YP_006922955.1| - 0.0033 17.3 0.0 0.0039 17.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|410670584|ref|YP_006922955.1| - 0.0041 16.8 0.0 0.0069 16.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|410670584|ref|YP_006922955.1| - 0.019 14.8 0.0 0.16 11.8 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|410670584|ref|YP_006922955.1| - 0.057 13.5 0.0 0.068 13.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|410670584|ref|YP_006922955.1| - 0.07 12.8 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Peptidase_M20 PF01546.23 gi|410670585|ref|YP_006922956.1| - 1.1e-25 90.2 0.0 1.3e-25 90.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|410670585|ref|YP_006922956.1| - 7.3e-08 32.1 0.0 1.5e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|410670585|ref|YP_006922956.1| - 0.0082 15.8 0.0 0.026 14.2 0.0 1.7 2 0 0 2 2 2 1 Peptidase family M28 NTP_transf_2 PF01909.18 gi|410670586|ref|YP_006922957.1| - 1.2e-05 25.5 0.0 2.9e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF2098 PF09871.4 gi|410670587|ref|YP_006922958.1| - 2.5e-18 65.7 0.5 3e-18 65.5 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) GCHY-1 PF02649.9 gi|410670588|ref|YP_006922959.1| - 2.9e-91 305.5 6.3 3.3e-91 305.3 4.3 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.13 gi|410670588|ref|YP_006922959.1| - 0.043 13.9 0.4 4.1 7.5 0.0 3.3 2 1 1 3 3 3 0 Dihydroneopterin aldolase CDC37_C PF08564.5 gi|410670588|ref|YP_006922959.1| - 0.075 12.8 0.1 0.21 11.4 0.1 1.8 1 0 0 1 1 1 0 Cdc37 C terminal domain DUF2693 PF10902.3 gi|410670588|ref|YP_006922959.1| - 0.4 10.6 4.0 8.5 6.3 0.0 3.6 4 1 0 4 4 4 0 Protein of unknown function (DUF2693) MC1 PF05854.6 gi|410670589|ref|YP_006922960.1| - 1.9e-46 155.9 2.3 2.2e-46 155.7 1.6 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 AA_kinase PF00696.23 gi|410670590|ref|YP_006922961.1| - 2.4e-43 148.4 3.1 2.8e-43 148.2 2.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family DUF3356 PF11836.3 gi|410670590|ref|YP_006922961.1| - 0.011 15.4 0.2 0.44 10.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3356) Radical_SAM PF04055.16 gi|410670591|ref|YP_006922962.1| - 5.5e-07 29.9 0.0 1.2e-06 28.8 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily Rubredoxin PF00301.15 gi|410670591|ref|YP_006922962.1| - 0.016 15.0 0.7 0.032 14.1 0.0 1.8 2 0 0 2 2 2 0 Rubredoxin Churchill PF06573.6 gi|410670591|ref|YP_006922962.1| - 0.06 13.3 0.1 1.1 9.3 0.0 2.3 2 0 0 2 2 2 0 Churchill protein GMP_synt_C PF00958.17 gi|410670592|ref|YP_006922963.1| - 6.4e-29 99.5 0.0 1.3e-28 98.5 0.0 1.6 1 1 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|410670592|ref|YP_006922963.1| - 1.2e-10 40.6 0.0 9e-10 37.8 0.0 2.0 1 1 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|410670592|ref|YP_006922963.1| - 6e-05 22.4 0.0 0.00044 19.6 0.0 2.0 1 1 1 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|410670592|ref|YP_006922963.1| - 6.1e-05 22.6 0.0 0.00013 21.5 0.0 1.6 2 0 0 2 2 2 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|410670592|ref|YP_006922963.1| - 6.9e-05 21.5 0.0 0.0057 15.2 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase ThiI PF02568.9 gi|410670592|ref|YP_006922963.1| - 0.0015 18.0 0.0 0.0055 16.1 0.0 2.0 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.14 gi|410670592|ref|YP_006922963.1| - 0.015 14.3 0.0 0.031 13.3 0.0 1.5 1 0 0 1 1 1 0 Arginosuccinate synthase DUF2674 PF10879.3 gi|410670592|ref|YP_006922963.1| - 0.038 13.7 0.1 2.5 7.9 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2674) PAPS_reduct PF01507.14 gi|410670592|ref|YP_006922963.1| - 0.052 13.3 0.0 0.077 12.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.15 gi|410670592|ref|YP_006922963.1| - 0.16 11.4 0.0 0.27 10.7 0.0 1.5 1 1 0 1 1 1 0 PP-loop family OrfB_IS605 PF01385.14 gi|410670593|ref|YP_006922964.1| - 8.2e-32 110.4 5.1 1.4e-31 109.6 3.5 1.3 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.3 gi|410670593|ref|YP_006922964.1| - 2.7e-19 68.1 0.2 1.1e-18 66.2 0.1 2.2 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.6 gi|410670593|ref|YP_006922964.1| - 1.4e-18 66.2 0.1 2.9e-18 65.2 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RQC PF09382.5 gi|410670594|ref|YP_006922965.1| - 5.9e-26 90.2 0.5 3.2e-25 87.8 0.1 2.3 2 0 0 2 2 2 1 RQC domain HRDC PF00570.18 gi|410670594|ref|YP_006922965.1| - 1.2e-21 76.1 0.0 2.4e-21 75.2 0.0 1.5 1 0 0 1 1 1 1 HRDC domain DEAD PF00270.24 gi|410670594|ref|YP_006922965.1| - 8.8e-21 74.1 0.0 2.1e-19 69.6 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|410670594|ref|YP_006922965.1| - 1.3e-20 73.0 0.0 1.4e-18 66.5 0.0 3.0 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|410670594|ref|YP_006922965.1| - 0.0014 18.5 0.0 0.0034 17.2 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_Sgs1 PF11408.3 gi|410670594|ref|YP_006922965.1| - 0.0039 16.9 0.1 0.0092 15.7 0.0 1.5 1 0 0 1 1 1 1 Sgs1 RecQ helicase DUF2884 PF11101.3 gi|410670594|ref|YP_006922965.1| - 0.01 15.2 0.0 0.02 14.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) Reprolysin_5 PF13688.1 gi|410670597|ref|YP_006922968.1| - 5.6e-05 23.1 2.8 8.1e-05 22.6 2.0 1.3 1 1 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_3 PF13582.1 gi|410670597|ref|YP_006922968.1| - 0.0054 17.2 0.4 0.0079 16.7 0.2 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like DUF4339 PF14237.1 gi|410670598|ref|YP_006922969.1| - 0.12 11.9 0.0 19 4.9 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4339) DDE_3 PF13358.1 gi|410670599|ref|YP_006922970.1| - 7.8e-25 87.3 0.5 1.7e-24 86.2 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_29 PF13551.1 gi|410670599|ref|YP_006922970.1| - 1.8e-16 60.2 0.0 5.6e-16 58.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410670599|ref|YP_006922970.1| - 2.1e-10 41.2 0.7 8.6e-10 39.2 0.0 2.4 3 0 0 3 3 3 1 Homeodomain-like domain rve PF00665.21 gi|410670599|ref|YP_006922970.1| - 5.6e-09 36.1 0.0 1.3e-08 34.9 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_33 PF13592.1 gi|410670599|ref|YP_006922970.1| - 1.5e-08 34.0 0.1 4.3e-08 32.5 0.1 1.9 1 0 0 1 1 1 1 Winged helix-turn helix DDE_1 PF03184.14 gi|410670599|ref|YP_006922970.1| - 1.6e-07 30.6 0.2 1.6e-07 30.6 0.1 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_23 PF13384.1 gi|410670599|ref|YP_006922970.1| - 3.3e-06 26.5 0.1 1e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|410670599|ref|YP_006922970.1| - 2.7e-05 24.0 0.0 6.4e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_21 PF13276.1 gi|410670599|ref|YP_006922970.1| - 0.09 12.7 0.1 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 HTH-like domain Arc_PepC_II PF06847.6 gi|410670600|ref|YP_006922971.1| - 3.2e-24 85.1 0.8 7.1e-24 84.0 0.0 2.0 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|410670600|ref|YP_006922971.1| - 5.5e-11 42.5 12.5 5.5e-11 42.5 8.6 1.9 2 1 0 2 2 2 1 Type IV leader peptidase family ASFV_L11L PF05293.6 gi|410670600|ref|YP_006922971.1| - 1.1 9.4 14.4 0.087 12.9 5.2 2.5 2 0 0 2 2 2 0 African swine fever virus (ASFV) L11L protein Methyltransf_6 PF03737.10 gi|410670601|ref|YP_006922972.1| - 3.7e-38 130.8 2.5 3.7e-38 130.8 1.7 2.3 3 0 0 3 3 3 1 Demethylmenaquinone methyltransferase OMPdecase PF00215.19 gi|410670601|ref|YP_006922972.1| - 1e-21 77.3 5.2 1.9e-21 76.5 3.6 1.4 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family His_biosynth PF00977.16 gi|410670601|ref|YP_006922972.1| - 3.3e-06 26.5 3.4 5.3e-06 25.8 0.3 2.4 2 1 1 3 3 3 1 Histidine biosynthesis protein PEP_mutase PF13714.1 gi|410670601|ref|YP_006922972.1| - 1e-05 24.8 1.9 0.0062 15.7 0.1 2.7 1 1 1 2 2 2 2 Phosphoenolpyruvate phosphomutase NanE PF04131.9 gi|410670601|ref|YP_006922972.1| - 1.2e-05 24.3 2.2 1.2e-05 24.3 1.5 1.8 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase HMGL-like PF00682.14 gi|410670601|ref|YP_006922972.1| - 1.4e-05 24.8 2.9 0.00036 20.2 0.1 2.6 1 1 2 3 3 3 1 HMGL-like ThiG PF05690.9 gi|410670601|ref|YP_006922972.1| - 4.6e-05 22.6 0.6 8.8e-05 21.7 0.4 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG DeoC PF01791.4 gi|410670601|ref|YP_006922972.1| - 0.00023 20.5 6.5 0.0024 17.1 4.5 2.4 1 1 0 1 1 1 1 DeoC/LacD family aldolase Dus PF01207.12 gi|410670601|ref|YP_006922972.1| - 0.00059 18.7 0.5 0.0014 17.5 0.2 1.8 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) DUF561 PF04481.7 gi|410670601|ref|YP_006922972.1| - 0.0023 16.8 1.5 0.0073 15.2 1.1 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF561) PcrB PF01884.12 gi|410670601|ref|YP_006922972.1| - 0.014 14.6 9.3 0.14 11.4 0.7 3.3 3 1 1 4 4 4 0 PcrB family TMP-TENI PF02581.12 gi|410670601|ref|YP_006922972.1| - 0.017 14.2 4.2 0.12 11.4 2.9 2.4 1 1 0 1 1 1 0 Thiamine monophosphate synthase/TENI CBM_17_28 PF03424.9 gi|410670601|ref|YP_006922972.1| - 0.029 14.0 0.6 0.31 10.6 0.1 2.2 1 1 1 2 2 2 0 Carbohydrate binding domain (family 17/28) Ribul_P_3_epim PF00834.14 gi|410670601|ref|YP_006922972.1| - 0.35 9.9 4.2 2.4 7.1 2.2 2.3 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family Trp_syntA PF00290.15 gi|410670601|ref|YP_006922972.1| - 1.1 7.7 5.7 1.3 7.4 1.8 2.3 2 1 0 2 2 2 0 Tryptophan synthase alpha chain OTCace_N PF02729.16 gi|410670602|ref|YP_006922973.1| - 5.3e-42 142.8 0.0 2.1e-41 140.9 0.0 1.8 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|410670602|ref|YP_006922973.1| - 1.1e-38 132.6 0.0 1.4e-38 132.2 0.0 1.1 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.13 gi|410670603|ref|YP_006922974.1| - 8.4e-33 112.2 3.4 1.4e-32 111.6 2.4 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|410670603|ref|YP_006922974.1| - 7.9e-18 63.6 2.8 7.9e-18 63.6 1.9 1.6 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain RMP PF14996.1 gi|410670603|ref|YP_006922974.1| - 0.024 14.5 0.1 0.034 14.0 0.1 1.2 1 0 0 1 1 1 0 Retinal Maintenance DapB_C PF05173.9 gi|410670604|ref|YP_006922975.1| - 3e-48 162.9 0.2 4.7e-48 162.2 0.1 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|410670604|ref|YP_006922975.1| - 3.1e-27 94.9 2.2 3.1e-27 94.9 1.5 1.6 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus 3Beta_HSD PF01073.14 gi|410670604|ref|YP_006922975.1| - 0.049 12.3 1.6 0.12 11.0 1.1 1.6 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family DHDPS PF00701.17 gi|410670605|ref|YP_006922976.1| - 6.4e-96 320.3 0.2 7.1e-96 320.2 0.1 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DUF2187 PF09953.4 gi|410670605|ref|YP_006922976.1| - 0.04 13.6 0.1 0.092 12.4 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2187) Ribosomal_S17e PF00833.13 gi|410670606|ref|YP_006922977.1| - 2.9e-14 52.8 0.6 3e-14 52.8 0.4 1.0 1 0 0 1 1 1 1 Ribosomal S17 PGPGW PF09656.5 gi|410670607|ref|YP_006922978.1| - 0.0014 17.8 5.2 0.0023 17.1 3.6 1.3 1 0 0 1 1 1 1 Putative transmembrane protein (PGPGW) DUF4199 PF13858.1 gi|410670607|ref|YP_006922978.1| - 0.38 10.6 3.7 0.38 10.6 2.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) IMS PF00817.15 gi|410670608|ref|YP_006922979.1| - 3e-47 160.1 0.0 5.3e-47 159.3 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|410670608|ref|YP_006922979.1| - 3e-22 78.9 0.1 5.3e-22 78.1 0.1 1.4 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|410670608|ref|YP_006922979.1| - 4.2e-06 26.4 0.0 1.6e-05 24.6 0.0 2.1 2 0 0 2 2 2 1 IMS family HHH motif DUF4332 PF14229.1 gi|410670608|ref|YP_006922979.1| - 0.00064 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) HHH_5 PF14520.1 gi|410670608|ref|YP_006922979.1| - 0.0013 18.8 0.0 0.0036 17.4 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|410670608|ref|YP_006922979.1| - 0.0046 16.8 0.0 0.012 15.5 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus TfoX_C PF04994.8 gi|410670608|ref|YP_006922979.1| - 0.16 11.8 0.0 0.45 10.4 0.0 1.7 1 0 0 1 1 1 0 TfoX C-terminal domain Orthopox_F14 PF06076.7 gi|410670608|ref|YP_006922979.1| - 0.24 11.4 0.1 0.24 11.4 0.1 2.5 3 0 0 3 3 3 0 Orthopoxvirus F14 protein Dala_Dala_lig_C PF07478.8 gi|410670609|ref|YP_006922980.1| - 4.9e-27 94.6 0.0 7.5e-27 94.0 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Methyltransf_18 PF12847.2 gi|410670609|ref|YP_006922980.1| - 1.2e-17 64.4 0.0 1.1e-16 61.3 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|410670609|ref|YP_006922980.1| - 5.4e-17 62.0 0.0 1e-16 61.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|410670609|ref|YP_006922980.1| - 1.9e-16 60.0 0.0 3.7e-16 59.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain ATP-grasp_4 PF13535.1 gi|410670609|ref|YP_006922980.1| - 8.9e-14 51.6 0.0 3.4e-13 49.7 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain Methyltransf_25 PF13649.1 gi|410670609|ref|YP_006922980.1| - 1.2e-13 51.3 0.0 2.2e-13 50.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|410670609|ref|YP_006922980.1| - 1.1e-09 37.7 0.0 2.5e-09 36.6 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|410670609|ref|YP_006922980.1| - 1.7e-09 37.5 0.1 5.2e-09 36.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|410670609|ref|YP_006922980.1| - 2.4e-07 30.7 0.0 4.8e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain ATPgrasp_Ter PF15632.1 gi|410670609|ref|YP_006922980.1| - 6.3e-07 28.4 0.0 0.007 15.1 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon MTS PF05175.9 gi|410670609|ref|YP_006922980.1| - 1.5e-06 27.6 0.0 2.6e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|410670609|ref|YP_006922980.1| - 3.9e-05 22.8 0.0 6.9e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_12 PF08242.7 gi|410670609|ref|YP_006922980.1| - 6.5e-05 23.3 0.0 0.00013 22.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|410670609|ref|YP_006922980.1| - 0.00029 20.0 0.0 0.00047 19.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|410670609|ref|YP_006922980.1| - 0.00083 18.4 0.0 0.0019 17.2 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase Cons_hypoth95 PF03602.10 gi|410670609|ref|YP_006922980.1| - 0.0012 18.2 0.0 0.0024 17.2 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PCMT PF01135.14 gi|410670609|ref|YP_006922980.1| - 0.0024 17.4 0.0 0.0049 16.4 0.0 1.5 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|410670609|ref|YP_006922980.1| - 0.0028 17.0 0.0 0.0049 16.2 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW ATP-grasp_3 PF02655.9 gi|410670609|ref|YP_006922980.1| - 0.003 17.4 0.0 0.0081 16.0 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain Methyltransf_9 PF08003.6 gi|410670609|ref|YP_006922980.1| - 0.0043 15.8 0.0 0.16 10.6 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) RrnaAD PF00398.15 gi|410670609|ref|YP_006922980.1| - 0.028 13.4 0.0 0.051 12.6 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase CPSase_L_D2 PF02786.12 gi|410670609|ref|YP_006922980.1| - 0.037 13.3 0.0 0.12 11.6 0.0 1.8 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain UPF0020 PF01170.13 gi|410670609|ref|YP_006922980.1| - 0.04 13.5 0.0 0.12 11.9 0.0 1.7 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 TTL PF03133.10 gi|410670609|ref|YP_006922980.1| - 0.12 11.2 0.0 0.21 10.4 0.0 1.3 1 0 0 1 1 1 0 Tubulin-tyrosine ligase family Dala_Dala_lig_N PF01820.16 gi|410670609|ref|YP_006922980.1| - 0.14 12.5 0.0 0.37 11.1 0.0 1.8 1 0 0 1 1 1 0 D-ala D-ala ligase N-terminus Methyltransf_32 PF13679.1 gi|410670609|ref|YP_006922980.1| - 0.17 11.5 0.0 0.34 10.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DHHA1 PF02272.14 gi|410670611|ref|YP_006922982.1| - 1e-05 25.1 0.3 1.3e-05 24.7 0.2 1.1 1 0 0 1 1 1 1 DHHA1 domain DUF667 PF05018.8 gi|410670611|ref|YP_006922982.1| - 0.11 11.6 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF667) Glycos_transf_2 PF00535.21 gi|410670612|ref|YP_006922983.1| - 3.1e-07 30.2 0.0 5.4e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 DNA_alkylation PF08713.6 gi|410670613|ref|YP_006922984.1| - 1.4e-58 197.9 2.2 1.6e-58 197.7 1.5 1.0 1 0 0 1 1 1 1 DNA alkylation repair enzyme YvbH_ext PF11724.3 gi|410670613|ref|YP_006922984.1| - 0.0012 18.4 0.3 0.0029 17.2 0.2 1.7 1 0 0 1 1 1 1 YvbH-like oligomerisation region Condensin2nSMC PF12422.3 gi|410670613|ref|YP_006922984.1| - 0.16 11.6 0.5 2.3 7.9 0.0 2.5 3 0 0 3 3 3 0 Condensin II non structural maintenance of chromosomes subunit Pirin PF02678.11 gi|410670614|ref|YP_006922985.1| - 1.9e-35 120.9 0.2 5e-35 119.6 0.1 1.7 2 0 0 2 2 2 1 Pirin Pirin_C PF05726.8 gi|410670614|ref|YP_006922985.1| - 1.9e-31 108.1 0.0 4.9e-31 106.8 0.0 1.7 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Cupin_2 PF07883.6 gi|410670614|ref|YP_006922985.1| - 0.00026 20.4 0.1 0.087 12.3 0.1 2.4 2 0 0 2 2 2 2 Cupin domain Cupin_3 PF05899.7 gi|410670614|ref|YP_006922985.1| - 0.093 12.1 0.0 2.1 7.7 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF861) DUF1624 PF07786.7 gi|410670615|ref|YP_006922986.1| - 4.9e-72 241.8 12.0 5.7e-72 241.6 8.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.17 gi|410670615|ref|YP_006922986.1| - 2.7e-10 39.6 25.4 1.5e-06 27.3 3.1 2.2 1 1 1 2 2 2 2 Acyltransferase family OpgC_C PF10129.4 gi|410670615|ref|YP_006922986.1| - 3.5e-05 22.6 6.8 0.00039 19.2 2.3 2.5 1 1 0 2 2 2 2 OpgC protein DUF2072 PF09845.4 gi|410670616|ref|YP_006922987.1| - 1.1e-43 148.2 3.9 2.7e-42 143.7 2.7 2.0 1 1 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) FEZ PF07763.8 gi|410670616|ref|YP_006922987.1| - 0.072 12.7 0.8 0.09 12.4 0.6 1.1 1 0 0 1 1 1 0 FEZ-like protein NAF PF03822.9 gi|410670616|ref|YP_006922987.1| - 0.24 11.1 0.8 40 4.0 0.0 3.0 3 0 0 3 3 3 0 NAF domain PNP_UDP_1 PF01048.15 gi|410670617|ref|YP_006922988.1| - 7.6e-44 149.4 0.0 8.9e-44 149.2 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DNA_pol_B_thumb PF14791.1 gi|410670617|ref|YP_006922988.1| - 0.026 14.2 0.0 0.058 13.0 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase beta thumb Pribosyltran PF00156.22 gi|410670618|ref|YP_006922989.1| - 2.6e-19 69.1 0.0 4e-19 68.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain SRP54 PF00448.17 gi|410670619|ref|YP_006922990.1| - 8.6e-71 237.4 0.0 1.4e-70 236.7 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|410670619|ref|YP_006922990.1| - 8.7e-30 103.0 1.9 8.7e-30 103.0 1.3 2.9 3 0 0 3 3 2 1 Signal peptide binding domain SRP54_N PF02881.14 gi|410670619|ref|YP_006922990.1| - 2.5e-15 56.3 0.4 2.5e-15 56.3 0.3 2.1 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|410670619|ref|YP_006922990.1| - 3e-06 26.7 0.8 0.00011 21.6 0.3 3.1 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|410670619|ref|YP_006922990.1| - 4.3e-06 26.2 0.2 3.6e-05 23.2 0.1 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|410670619|ref|YP_006922990.1| - 2.8e-05 23.8 0.0 6.5e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|410670619|ref|YP_006922990.1| - 0.00018 21.6 0.1 0.001 19.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|410670619|ref|YP_006922990.1| - 0.0004 21.1 0.1 0.0017 19.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain 6PF2K PF01591.13 gi|410670619|ref|YP_006922990.1| - 0.00054 19.0 0.0 0.0012 18.0 0.0 1.5 1 0 0 1 1 1 1 6-phosphofructo-2-kinase Zeta_toxin PF06414.7 gi|410670619|ref|YP_006922990.1| - 0.00061 18.9 0.0 0.0013 17.8 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin ArgK PF03308.11 gi|410670619|ref|YP_006922990.1| - 0.0017 17.1 0.1 0.013 14.3 0.0 2.2 3 0 0 3 3 3 1 ArgK protein AAA_33 PF13671.1 gi|410670619|ref|YP_006922990.1| - 0.0018 18.1 0.0 0.0032 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|410670619|ref|YP_006922990.1| - 0.0052 16.7 0.1 0.017 15.0 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain APS_kinase PF01583.15 gi|410670619|ref|YP_006922990.1| - 0.0069 16.0 0.0 0.023 14.3 0.0 1.9 2 0 0 2 2 2 1 Adenylylsulphate kinase TFIIA_gamma_N PF02268.11 gi|410670619|ref|YP_006922990.1| - 0.0074 15.8 0.1 0.021 14.3 0.1 1.7 1 0 0 1 1 1 1 Transcription initiation factor IIA, gamma subunit, helical domain ATP_bind_1 PF03029.12 gi|410670619|ref|YP_006922990.1| - 0.0093 15.5 0.0 0.062 12.8 0.0 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Thymidylate_kin PF02223.12 gi|410670619|ref|YP_006922990.1| - 0.012 14.9 0.0 0.042 13.2 0.0 1.9 1 0 0 1 1 1 0 Thymidylate kinase LpxK PF02606.9 gi|410670619|ref|YP_006922990.1| - 0.015 14.2 0.1 0.033 13.1 0.0 1.5 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase TrwB_AAD_bind PF10412.4 gi|410670619|ref|YP_006922990.1| - 0.018 13.6 0.0 0.037 12.6 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_18 PF13238.1 gi|410670619|ref|YP_006922990.1| - 0.02 15.2 0.1 0.064 13.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|410670619|ref|YP_006922990.1| - 0.022 13.9 0.0 0.05 12.8 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|410670619|ref|YP_006922990.1| - 0.06 12.9 0.1 0.24 10.9 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|410670619|ref|YP_006922990.1| - 0.069 13.1 0.3 0.2 11.6 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|410670619|ref|YP_006922990.1| - 0.069 12.5 0.1 0.099 12.0 0.1 1.6 1 1 0 1 1 1 0 AAA-like domain AAA_5 PF07728.9 gi|410670619|ref|YP_006922990.1| - 0.089 12.5 0.5 0.82 9.3 0.0 2.6 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) PduV-EutP PF10662.4 gi|410670619|ref|YP_006922990.1| - 0.09 12.2 1.0 0.24 10.8 0.6 1.9 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_19 PF13245.1 gi|410670619|ref|YP_006922990.1| - 0.12 12.1 0.0 0.37 10.5 0.0 1.8 2 0 0 2 2 1 0 Part of AAA domain G-alpha PF00503.15 gi|410670619|ref|YP_006922990.1| - 0.18 10.4 0.5 0.67 8.5 0.2 1.8 1 1 1 2 2 2 0 G-protein alpha subunit AAA_25 PF13481.1 gi|410670619|ref|YP_006922990.1| - 1.3 8.3 3.6 5.1 6.4 0.6 3.1 2 1 0 2 2 2 0 AAA domain GATase PF00117.23 gi|410670620|ref|YP_006922991.1| - 3.8e-33 114.5 0.0 4.1e-33 114.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|410670620|ref|YP_006922991.1| - 2.1e-13 50.2 0.7 4e-12 46.0 0.1 2.5 1 1 1 2 2 2 1 Peptidase C26 KaiC PF06745.8 gi|410670622|ref|YP_006922993.1| - 1.6e-77 259.6 0.0 5.4e-46 156.5 0.1 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|410670622|ref|YP_006922993.1| - 6.6e-17 61.5 0.0 1e-07 31.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|410670622|ref|YP_006922993.1| - 1.7e-10 40.5 0.1 3.5e-07 29.8 0.0 2.4 2 0 0 2 2 2 2 Part of AAA domain GvpD PF07088.6 gi|410670622|ref|YP_006922993.1| - 2.9e-07 29.1 2.1 6.1e-05 21.5 0.0 2.4 3 0 0 3 3 3 2 GvpD gas vesicle protein DUF2075 PF09848.4 gi|410670622|ref|YP_006922993.1| - 0.00017 20.6 0.2 0.072 12.0 0.0 2.4 2 1 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) RecA PF00154.16 gi|410670622|ref|YP_006922993.1| - 0.0003 19.9 0.9 0.05 12.6 0.1 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein DnaB_C PF03796.10 gi|410670622|ref|YP_006922993.1| - 0.00033 19.6 0.0 0.24 10.2 0.0 2.4 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain IstB_IS21 PF01695.12 gi|410670622|ref|YP_006922993.1| - 0.002 17.5 1.8 1.3 8.4 0.0 3.5 4 0 0 4 4 4 1 IstB-like ATP binding protein DEAD PF00270.24 gi|410670622|ref|YP_006922993.1| - 0.0032 16.9 0.0 0.52 9.7 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|410670622|ref|YP_006922993.1| - 0.0039 17.3 2.4 1.1 9.3 0.3 2.8 2 1 0 2 2 2 1 AAA domain PAXNEB PF05625.6 gi|410670622|ref|YP_006922993.1| - 0.014 14.2 5.0 0.062 12.1 0.2 2.5 3 0 0 3 3 3 0 PAXNEB protein Rad51 PF08423.6 gi|410670622|ref|YP_006922993.1| - 0.016 14.1 1.0 1.5 7.7 0.0 2.6 3 0 0 3 3 3 0 Rad51 ResIII PF04851.10 gi|410670622|ref|YP_006922993.1| - 0.021 14.6 0.1 5.6 6.7 0.2 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_11 PF13086.1 gi|410670622|ref|YP_006922993.1| - 0.022 14.3 0.0 0.39 10.2 0.0 2.2 2 1 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|410670622|ref|YP_006922993.1| - 0.031 13.7 2.7 2.9 7.2 0.3 3.0 3 0 0 3 3 3 0 FtsK/SpoIIIE family T2SE PF00437.15 gi|410670622|ref|YP_006922993.1| - 0.041 12.7 0.3 5.1 5.9 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_5 PF07728.9 gi|410670622|ref|YP_006922993.1| - 0.048 13.3 0.4 3.7 7.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|410670622|ref|YP_006922993.1| - 0.068 12.8 0.3 7.7 6.1 0.0 2.6 2 1 0 2 2 2 0 NACHT domain AAA_29 PF13555.1 gi|410670622|ref|YP_006922993.1| - 0.074 12.5 1.1 2.9 7.4 0.2 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|410670622|ref|YP_006922993.1| - 0.093 12.2 0.3 1 8.8 0.0 2.4 3 0 0 3 3 3 0 AAA domain AAA_16 PF13191.1 gi|410670622|ref|YP_006922993.1| - 0.1 12.6 3.6 1.9 8.4 0.1 2.4 2 0 0 2 2 2 0 AAA ATPase domain Sigma54_activat PF00158.21 gi|410670622|ref|YP_006922993.1| - 0.1 12.0 0.1 4.2 6.8 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF3887 PF13026.1 gi|410670622|ref|YP_006922993.1| - 0.22 11.8 0.8 0.71 10.1 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3887) AAA PF00004.24 gi|410670622|ref|YP_006922993.1| - 0.58 10.3 6.4 4.3 7.5 0.1 2.8 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DeoC PF01791.4 gi|410670623|ref|YP_006922994.1| - 2.1e-55 187.6 0.0 2.6e-55 187.3 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHQS PF01959.11 gi|410670624|ref|YP_006922995.1| - 1.1e-150 501.1 6.9 1.3e-150 501.0 4.8 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) DUF2577 PF10844.3 gi|410670624|ref|YP_006922995.1| - 0.002 18.1 0.6 0.25 11.4 0.0 2.8 1 1 1 2 2 2 2 Protein of unknown function (DUF2577) OapA PF04225.7 gi|410670624|ref|YP_006922995.1| - 0.016 15.0 0.1 0.69 9.8 0.0 2.5 1 1 1 2 2 2 0 Opacity-associated protein A LysM-like domain UPF0086 PF01868.11 gi|410670624|ref|YP_006922995.1| - 0.14 11.7 1.4 1.4 8.6 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function UPF0086 DHquinase_I PF01487.10 gi|410670625|ref|YP_006922996.1| - 8.3e-54 182.5 0.1 9.3e-54 182.4 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase TIR PF01582.15 gi|410670625|ref|YP_006922996.1| - 0.14 11.6 0.0 0.29 10.5 0.0 1.5 1 0 0 1 1 1 0 TIR domain Shikimate_dh_N PF08501.6 gi|410670626|ref|YP_006922997.1| - 2.9e-27 94.5 0.0 8.1e-27 93.1 0.0 1.8 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|410670626|ref|YP_006922997.1| - 2e-14 53.8 0.0 3.1e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|410670626|ref|YP_006922997.1| - 3.6e-05 24.1 0.0 7e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|410670626|ref|YP_006922997.1| - 0.00027 20.1 0.0 0.00056 19.1 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|410670626|ref|YP_006922997.1| - 0.0054 15.7 0.0 0.0079 15.2 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|410670626|ref|YP_006922997.1| - 0.016 15.2 0.3 0.038 13.9 0.2 1.8 1 1 0 1 1 1 0 NADH(P)-binding NAD_binding_7 PF13241.1 gi|410670626|ref|YP_006922997.1| - 0.017 15.3 0.0 0.03 14.5 0.0 1.4 1 1 0 1 1 1 0 Putative NAD(P)-binding THF_DHG_CYH_C PF02882.14 gi|410670626|ref|YP_006922997.1| - 0.046 12.7 0.0 0.27 10.2 0.0 2.3 2 2 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 3HCDH_N PF02737.13 gi|410670626|ref|YP_006922997.1| - 0.11 12.1 0.2 0.2 11.3 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDH PF02153.12 gi|410670627|ref|YP_006922998.1| - 1.2e-52 178.3 0.0 3.1e-52 177.0 0.0 1.6 2 0 0 2 2 2 1 Prephenate dehydrogenase NAD_binding_2 PF03446.10 gi|410670627|ref|YP_006922998.1| - 1.1e-08 35.0 0.0 2.1e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|410670627|ref|YP_006922998.1| - 1.7e-07 31.5 0.0 5.4e-07 29.9 0.0 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|410670627|ref|YP_006922998.1| - 4.5e-06 25.9 0.0 9.6e-06 24.8 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDX-ACB PF03147.9 gi|410670627|ref|YP_006922998.1| - 2e-05 24.6 0.0 5.6e-05 23.2 0.0 1.8 1 0 0 1 1 1 1 Ferredoxin-fold anticodon binding domain NAD_Gly3P_dh_N PF01210.18 gi|410670627|ref|YP_006922998.1| - 0.0001 22.0 3.0 0.0052 16.5 1.5 2.7 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.7 gi|410670627|ref|YP_006922998.1| - 0.00095 18.5 0.0 0.0025 17.2 0.0 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain CoA_binding PF02629.14 gi|410670627|ref|YP_006922998.1| - 0.013 16.0 0.1 0.038 14.4 0.0 1.8 1 0 0 1 1 1 0 CoA binding domain ApbA PF02558.11 gi|410670627|ref|YP_006922998.1| - 0.017 14.5 0.3 0.066 12.6 0.0 2.1 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Epimerase PF01370.16 gi|410670627|ref|YP_006922998.1| - 0.019 14.4 0.0 0.036 13.5 0.0 1.5 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NmrA PF05368.8 gi|410670627|ref|YP_006922998.1| - 0.068 12.4 0.7 0.17 11.1 0.0 2.0 3 0 0 3 3 3 0 NmrA-like family Semialdhyde_dh PF01118.19 gi|410670627|ref|YP_006922998.1| - 0.077 13.3 0.1 0.34 11.2 0.0 2.1 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain TIM PF00121.13 gi|410670629|ref|YP_006923000.1| - 7.8e-30 103.7 0.2 1.3e-27 96.4 0.2 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|410670629|ref|YP_006923000.1| - 9.1e-05 21.6 0.5 0.00031 19.9 0.2 1.9 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|410670629|ref|YP_006923000.1| - 0.00057 19.1 0.9 0.00057 19.1 0.6 1.6 1 1 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|410670629|ref|YP_006923000.1| - 0.0074 15.1 1.3 0.012 14.4 0.2 1.8 2 0 0 2 2 2 1 FMN-dependent dehydrogenase SpoVS PF04232.7 gi|410670629|ref|YP_006923000.1| - 0.022 14.3 0.4 0.21 11.1 0.0 2.4 2 0 0 2 2 2 0 Stage V sporulation protein S (SpoVS) Fae PF08714.6 gi|410670630|ref|YP_006923001.1| - 2.5e-68 228.8 0.2 6.3e-68 227.4 0.2 1.7 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.19 gi|410670630|ref|YP_006923001.1| - 4.2e-28 98.2 1.1 1.9e-27 96.1 0.7 1.9 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|410670630|ref|YP_006923001.1| - 2.4e-05 23.5 1.1 0.00014 21.0 0.8 2.2 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.12 gi|410670630|ref|YP_006923001.1| - 0.0003 20.1 1.0 0.0042 16.3 0.1 2.3 2 0 0 2 2 2 1 PcrB family QRPTase_C PF01729.14 gi|410670630|ref|YP_006923001.1| - 0.0032 17.0 1.0 0.038 13.5 0.0 2.6 1 1 1 3 3 3 1 Quinolinate phosphoribosyl transferase, C-terminal domain TMP-TENI PF02581.12 gi|410670630|ref|YP_006923001.1| - 0.049 12.7 0.7 0.36 9.9 0.2 2.2 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI DSHCT PF08148.7 gi|410670630|ref|YP_006923001.1| - 0.069 12.3 0.0 0.14 11.3 0.0 1.5 1 0 0 1 1 1 0 DSHCT (NUC185) domain HhH-GPD PF00730.20 gi|410670631|ref|YP_006923002.1| - 3.5e-23 81.9 0.0 4.7e-23 81.5 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|410670631|ref|YP_006923002.1| - 3.9e-11 41.9 0.3 2.3e-10 39.5 0.0 2.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|410670631|ref|YP_006923002.1| - 0.0055 16.8 4.4 0.0093 16.1 3.1 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|410670631|ref|YP_006923002.1| - 0.018 15.2 0.2 1.1 9.4 0.0 2.6 3 0 0 3 3 3 0 Helix-hairpin-helix domain DUF2400 PF09674.5 gi|410670631|ref|YP_006923002.1| - 0.088 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) HHH_2 PF12826.2 gi|410670631|ref|YP_006923002.1| - 0.11 12.4 0.0 5.1 7.0 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF4139 PF13598.1 gi|410670632|ref|YP_006923003.1| - 4.6e-09 36.0 2.0 0.00019 20.8 0.6 2.9 2 1 0 2 2 2 2 Domain of unknown function (DUF4139) PAS_9 PF13426.1 gi|410670633|ref|YP_006923004.1| - 1.1e-41 141.3 0.2 1e-13 51.5 0.0 4.3 5 0 0 5 5 5 3 PAS domain PAS_4 PF08448.5 gi|410670633|ref|YP_006923004.1| - 1.9e-31 108.3 0.0 6.4e-10 39.0 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|410670633|ref|YP_006923004.1| - 4.3e-31 107.0 0.0 2.1e-10 40.3 0.0 3.5 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|410670633|ref|YP_006923004.1| - 3e-27 94.5 0.0 7.4e-27 93.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|410670633|ref|YP_006923004.1| - 1.1e-26 93.0 0.3 2.4e-26 91.9 0.2 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.6 gi|410670633|ref|YP_006923004.1| - 1.6e-18 66.6 0.0 4e-05 23.6 0.0 4.0 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|410670633|ref|YP_006923004.1| - 2.3e-13 49.4 0.1 7.4e-06 25.6 0.0 3.6 3 0 0 3 3 3 2 PAS domain HisKA PF00512.20 gi|410670633|ref|YP_006923004.1| - 6.8e-11 42.0 0.0 2.1e-10 40.4 0.0 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|410670633|ref|YP_006923004.1| - 0.00029 20.5 0.1 0.00074 19.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|410670633|ref|YP_006923004.1| - 0.0014 18.6 0.3 6.8 6.6 0.0 3.8 4 0 0 4 4 3 1 PAS domain PAS_7 PF12860.2 gi|410670633|ref|YP_006923004.1| - 0.0017 18.3 0.3 1.2 9.1 0.0 3.6 4 1 0 4 4 4 1 PAS fold SNARE_assoc PF09335.6 gi|410670634|ref|YP_006923005.1| - 7.3e-09 35.8 0.4 7.5e-09 35.8 0.3 1.0 1 0 0 1 1 1 1 SNARE associated Golgi protein DUF1275 PF06912.6 gi|410670635|ref|YP_006923006.1| - 0.016 14.4 0.3 0.017 14.2 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1275) Na_H_antiport_1 PF06965.7 gi|410670635|ref|YP_006923006.1| - 0.02 13.6 0.5 0.023 13.5 0.4 1.0 1 0 0 1 1 1 0 Na+/H+ antiporter 1 FUSC_2 PF13515.1 gi|410670635|ref|YP_006923006.1| - 0.02 14.7 0.5 0.021 14.7 0.3 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein-like VIT1 PF01988.14 gi|410670635|ref|YP_006923006.1| - 0.027 13.9 0.9 0.029 13.8 0.6 1.0 1 0 0 1 1 1 0 VIT family DUF1648 PF07853.6 gi|410670635|ref|YP_006923006.1| - 0.1 12.1 0.7 0.1 12.1 0.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1648) PIRT PF15099.1 gi|410670635|ref|YP_006923006.1| - 0.12 11.5 1.2 0.13 11.5 0.8 1.1 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family TMEM223 PF14640.1 gi|410670635|ref|YP_006923006.1| - 0.12 12.2 0.1 0.13 12.1 0.1 1.0 1 0 0 1 1 1 0 Transmembrane protein 223 DUF2929 PF11151.3 gi|410670635|ref|YP_006923006.1| - 0.15 12.1 1.5 0.2 11.7 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2929) Adeno_E3 PF06040.6 gi|410670635|ref|YP_006923006.1| - 0.25 11.3 0.8 0.29 11.0 0.3 1.3 1 1 0 1 1 1 0 Adenovirus E3 protein DUF1049 PF06305.6 gi|410670635|ref|YP_006923006.1| - 3 7.4 7.2 1.3 8.5 0.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1049) Fic PF02661.13 gi|410670636|ref|YP_006923007.1| - 5.4e-22 78.2 0.1 3.4e-21 75.7 0.0 2.3 2 0 0 2 2 2 1 Fic/DOC family HTH_DeoR PF08220.7 gi|410670636|ref|YP_006923007.1| - 0.00011 21.7 0.0 0.00038 19.9 0.0 2.0 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|410670636|ref|YP_006923007.1| - 0.00025 21.3 0.0 0.0085 16.3 0.0 3.0 3 0 0 3 3 3 1 Winged helix DNA-binding domain EAP30 PF04157.11 gi|410670636|ref|YP_006923007.1| - 0.0009 18.4 0.1 0.003 16.7 0.0 1.8 2 0 0 2 2 2 1 EAP30/Vps36 family HTH_11 PF08279.7 gi|410670636|ref|YP_006923007.1| - 0.00095 18.7 0.1 0.0047 16.5 0.0 2.2 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|410670636|ref|YP_006923007.1| - 0.001 18.7 1.0 0.0026 17.4 0.4 2.0 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|410670636|ref|YP_006923007.1| - 0.032 14.3 0.1 0.092 12.8 0.1 1.8 1 0 0 1 1 1 0 Penicillinase repressor MarR_2 PF12802.2 gi|410670636|ref|YP_006923007.1| - 0.061 13.0 0.0 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|410670636|ref|YP_006923007.1| - 0.1 12.6 0.0 0.47 10.6 0.0 2.0 1 1 0 2 2 2 0 Transcriptional regulator Cytochrom_C PF00034.16 gi|410670637|ref|YP_006923008.1| - 1.4e-07 32.2 0.0 3.9e-07 30.7 0.0 1.7 2 0 0 2 2 2 1 Cytochrome c Cytochrome_CBB3 PF13442.1 gi|410670637|ref|YP_006923008.1| - 1.8e-06 27.9 0.0 3.5e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III 2-Hacid_dh_C PF02826.14 gi|410670638|ref|YP_006923009.1| - 2.1e-13 49.8 0.0 2.4e-13 49.6 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E1-E2_ATPase PF00122.15 gi|410670639|ref|YP_006923010.1| - 1.5e-56 190.9 0.5 1.5e-56 190.9 0.3 2.6 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|410670639|ref|YP_006923010.1| - 2e-47 162.4 3.7 4.3e-47 161.3 2.5 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|410670639|ref|YP_006923010.1| - 4.1e-32 110.1 1.0 9e-15 54.5 0.1 3.1 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|410670639|ref|YP_006923010.1| - 3.3e-16 60.0 0.2 1.8e-15 57.6 0.0 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|410670639|ref|YP_006923010.1| - 3.1e-05 23.6 2.8 0.0064 16.1 0.2 2.5 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Tox-PL-2 PF15643.1 gi|410670639|ref|YP_006923010.1| - 0.007 16.3 0.3 3.3 7.7 0.0 3.3 3 0 0 3 3 3 1 Papain fold toxin 2 Toxin-deaminase PF14424.1 gi|410670639|ref|YP_006923010.1| - 0.041 13.8 0.0 0.47 10.4 0.0 2.3 2 0 0 2 2 2 0 The BURPS668_1122 family of deaminases SerH PF06873.6 gi|410670639|ref|YP_006923010.1| - 0.082 11.5 1.1 0.11 11.1 0.7 1.1 1 0 0 1 1 1 0 Cell surface immobilisation antigen SerH DUF3784 PF12650.2 gi|410670639|ref|YP_006923010.1| - 0.18 11.7 4.3 0.19 11.6 0.1 3.1 4 0 0 4 4 4 0 Domain of unknown function (DUF3784) Cytochrom_B559 PF00283.14 gi|410670639|ref|YP_006923010.1| - 0.3 10.4 4.0 1.6 8.0 0.6 2.6 2 0 0 2 2 2 0 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits Phage_int_SAM_4 PF13495.1 gi|410670640|ref|YP_006923011.1| - 0.022 15.0 0.2 3.5 8.0 0.0 2.4 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain CGGC PF08821.6 gi|410670641|ref|YP_006923012.1| - 6.1e-32 109.8 0.6 6.7e-32 109.7 0.4 1.0 1 0 0 1 1 1 1 CGGC domain tRNA-Thr_ED PF08915.6 gi|410670642|ref|YP_006923013.1| - 2.2e-37 128.1 2.1 2.4e-37 127.9 1.5 1.0 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase KaiC PF06745.8 gi|410670642|ref|YP_006923013.1| - 0.0069 15.5 0.5 0.0086 15.2 0.3 1.1 1 0 0 1 1 1 1 KaiC Lumazine_bd PF12870.2 gi|410670642|ref|YP_006923013.1| - 0.032 14.2 1.3 0.061 13.3 0.9 1.5 1 0 0 1 1 1 0 Lumazine-binding domain Mitofilin PF09731.4 gi|410670642|ref|YP_006923013.1| - 0.06 11.9 0.2 0.072 11.7 0.1 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein DUF427 PF04248.7 gi|410670643|ref|YP_006923014.1| - 2.2e-12 46.4 0.1 2.6e-12 46.2 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF427) PH PF00169.24 gi|410670643|ref|YP_006923014.1| - 0.12 12.6 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 PH domain HGD-D PF06050.8 gi|410670644|ref|YP_006923015.1| - 2.8e-106 355.2 0.1 3.3e-106 355.0 0.1 1.0 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component Ovate PF04844.8 gi|410670644|ref|YP_006923015.1| - 0.012 15.3 0.2 0.13 12.0 0.0 2.4 2 0 0 2 2 2 0 Transcriptional repressor, ovate DUF4211 PF13926.1 gi|410670644|ref|YP_006923015.1| - 0.014 14.7 0.0 0.025 13.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4211) DUF1847 PF08901.6 gi|410670644|ref|YP_006923015.1| - 0.019 14.4 0.0 0.033 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1847) DUF3571 PF12095.3 gi|410670644|ref|YP_006923015.1| - 0.13 12.5 0.7 10 6.4 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3571) BcrAD_BadFG PF01869.15 gi|410670645|ref|YP_006923016.1| - 1.7e-62 211.2 4.4 2e-62 210.9 3.0 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family CmcH_NodU PF02543.10 gi|410670645|ref|YP_006923016.1| - 0.00036 19.7 0.0 0.00045 19.4 0.0 1.2 1 0 0 1 1 1 1 Carbamoyltransferase FGGY_C PF02782.11 gi|410670645|ref|YP_006923016.1| - 0.00045 19.9 0.5 0.0021 17.7 0.3 1.9 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain Peptidase_M22 PF00814.20 gi|410670645|ref|YP_006923016.1| - 0.00054 19.5 0.1 0.00078 19.0 0.1 1.2 1 0 0 1 1 1 1 Glycoprotease family Tcp10_C PF07202.8 gi|410670645|ref|YP_006923016.1| - 0.0066 16.0 0.1 0.0098 15.4 0.1 1.2 1 0 0 1 1 1 1 T-complex protein 10 C-terminus Hydant_A_N PF05378.8 gi|410670645|ref|YP_006923016.1| - 0.079 12.4 0.6 0.12 11.9 0.4 1.4 1 1 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.1 gi|410670645|ref|YP_006923016.1| - 0.72 9.7 7.5 10 5.9 1.3 3.2 2 2 0 2 2 2 0 Cell division protein FtsA FGGY_N PF00370.16 gi|410670645|ref|YP_006923016.1| - 0.87 8.8 2.8 4.7 6.4 0.0 2.8 3 0 0 3 3 3 0 FGGY family of carbohydrate kinases, N-terminal domain UbiA PF01040.13 gi|410670646|ref|YP_006923017.1| - 1.7e-35 122.4 19.9 2.1e-35 122.1 13.8 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF4064 PF13273.1 gi|410670646|ref|YP_006923017.1| - 2.3 8.3 15.1 0.78 9.8 4.4 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF4064) Cupin_2 PF07883.6 gi|410670647|ref|YP_006923018.1| - 4.6e-16 58.0 0.0 6.2e-16 57.6 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|410670647|ref|YP_006923018.1| - 0.0016 18.1 0.0 0.002 17.7 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|410670647|ref|YP_006923018.1| - 0.0038 16.8 0.0 0.0047 16.5 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase CENP-C_C PF11699.3 gi|410670647|ref|YP_006923018.1| - 0.0046 16.9 0.0 0.0059 16.5 0.0 1.3 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_1 PF00190.17 gi|410670647|ref|YP_006923018.1| - 0.017 14.5 0.0 0.019 14.3 0.0 1.1 1 0 0 1 1 1 0 Cupin Cupin_3 PF05899.7 gi|410670647|ref|YP_006923018.1| - 0.023 14.0 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_6 PF12852.2 gi|410670647|ref|YP_006923018.1| - 0.089 12.3 0.0 0.093 12.3 0.0 1.1 1 0 0 1 1 1 0 Cupin dUTPase PF00692.14 gi|410670650|ref|YP_006923021.1| - 2.5e-11 43.1 0.0 3.4e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|410670650|ref|YP_006923021.1| - 0.0019 16.6 0.0 0.0034 15.8 0.0 1.4 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DeoC PF01791.4 gi|410670651|ref|YP_006923022.1| - 1.6e-57 194.5 0.1 1.9e-57 194.3 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.19 gi|410670651|ref|YP_006923022.1| - 1.8e-05 24.2 0.2 4.5e-05 22.9 0.1 1.6 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.12 gi|410670651|ref|YP_006923022.1| - 0.021 13.9 0.0 1.5 7.8 0.0 2.3 1 1 0 2 2 2 0 Thiamine monophosphate synthase/TENI AP_endonuc_2 PF01261.19 gi|410670651|ref|YP_006923022.1| - 0.045 13.0 0.1 0.61 9.3 0.1 2.1 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel PEP_mutase PF13714.1 gi|410670651|ref|YP_006923022.1| - 0.062 12.5 0.3 2.6 7.2 0.0 2.5 2 1 0 2 2 2 0 Phosphoenolpyruvate phosphomutase tRNA-synt_2b PF00587.20 gi|410670653|ref|YP_006923024.1| - 4e-57 192.5 0.7 1.4e-56 190.7 0.1 2.2 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|410670653|ref|YP_006923024.1| - 1.5e-19 69.6 0.2 7.9e-19 67.3 0.0 2.2 2 0 0 2 2 2 1 Anticodon binding domain zf-C2H2 PF00096.21 gi|410670653|ref|YP_006923024.1| - 0.1 12.9 0.4 0.1 12.9 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.5 gi|410670653|ref|YP_006923024.1| - 0.17 11.8 1.1 13 5.7 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain ERCC4 PF02732.10 gi|410670654|ref|YP_006923025.1| - 5.2e-30 104.0 0.2 1.8e-29 102.3 0.0 2.1 2 0 0 2 2 2 1 ERCC4 domain DEAD PF00270.24 gi|410670654|ref|YP_006923025.1| - 2.9e-18 65.9 0.2 8.4e-18 64.4 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|410670654|ref|YP_006923025.1| - 5.3e-18 64.6 0.0 2.3e-17 62.6 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|410670654|ref|YP_006923025.1| - 4.9e-14 52.5 0.0 1.3e-13 51.1 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|410670654|ref|YP_006923025.1| - 1.4e-11 44.0 1.0 1.1e-10 41.2 0.0 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|410670654|ref|YP_006923025.1| - 2.2e-10 40.5 0.0 1.1e-09 38.3 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|410670654|ref|YP_006923025.1| - 2.4e-07 30.0 0.1 5e-06 25.9 0.0 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|410670654|ref|YP_006923025.1| - 0.00019 21.6 0.1 0.0015 18.7 0.0 2.5 2 1 1 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold SNF2_N PF00176.18 gi|410670654|ref|YP_006923025.1| - 0.0026 16.6 0.0 0.0048 15.7 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain HHH_8 PF14716.1 gi|410670654|ref|YP_006923025.1| - 0.022 14.9 0.0 0.099 12.8 0.0 2.3 1 0 0 1 1 1 0 Helix-hairpin-helix domain Gly_kinase PF02595.10 gi|410670654|ref|YP_006923025.1| - 0.035 12.8 0.0 0.063 11.9 0.0 1.4 1 0 0 1 1 1 0 Glycerate kinase family DUF1870 PF08965.5 gi|410670654|ref|YP_006923025.1| - 0.057 13.0 0.0 0.31 10.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1870) COX6A PF02046.10 gi|410670654|ref|YP_006923025.1| - 0.068 13.0 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIa ParA PF10609.4 gi|410670654|ref|YP_006923025.1| - 0.082 12.8 0.0 15 5.5 0.0 2.7 2 0 0 2 2 2 0 ParA/MinD ATPase like TusA PF01206.12 gi|410670654|ref|YP_006923025.1| - 0.084 12.4 0.1 13 5.5 0.0 3.1 3 0 0 3 3 2 0 Sulfurtransferase TusA Auto_anti-p27 PF06677.7 gi|410670655|ref|YP_006923026.1| - 3.7e-15 55.4 1.9 5.5e-15 54.8 1.3 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|410670655|ref|YP_006923026.1| - 0.0019 17.9 1.0 0.0032 17.2 0.7 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF2072 PF09845.4 gi|410670655|ref|YP_006923026.1| - 0.19 11.6 0.5 0.25 11.2 0.4 1.6 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) DUF35_N PF12172.3 gi|410670655|ref|YP_006923026.1| - 0.61 10.0 2.9 1.6 8.7 2.0 1.7 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) UPF0147 PF03685.8 gi|410670656|ref|YP_006923027.1| - 1.3e-33 114.6 0.4 1.4e-33 114.5 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|410670656|ref|YP_006923027.1| - 0.03 14.4 0.0 2.3 8.3 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Translin PF01997.11 gi|410670657|ref|YP_006923028.1| - 8.8e-34 116.8 0.1 1.2e-33 116.4 0.0 1.2 1 0 0 1 1 1 1 Translin family tRNA-synt_2d PF01409.15 gi|410670658|ref|YP_006923029.1| - 3e-57 193.6 0.0 1.9e-52 177.9 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|410670658|ref|YP_006923029.1| - 8.1e-05 22.2 0.0 0.00029 20.4 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.15 gi|410670658|ref|YP_006923029.1| - 0.012 14.4 0.1 0.18 10.5 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class II (D, K and N) Endonuclease_5 PF04493.9 gi|410670659|ref|YP_006923030.1| - 1.2e-52 178.2 0.0 1.4e-52 178.0 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|410670659|ref|YP_006923030.1| - 0.018 14.1 0.0 0.052 12.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function DUF99 Viral_P18 PF04521.8 gi|410670659|ref|YP_006923030.1| - 0.053 12.9 0.0 0.1 12.0 0.0 1.5 1 0 0 1 1 1 0 ssRNA positive strand viral 18kD cysteine rich protein DUF473 PF04322.7 gi|410670660|ref|YP_006923031.1| - 3.2e-34 117.1 0.0 3.9e-34 116.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) MerR_2 PF13591.1 gi|410670660|ref|YP_006923031.1| - 0.012 15.1 0.0 0.037 13.6 0.0 1.7 2 0 0 2 2 2 0 MerR HTH family regulatory protein PAC2 PF09754.4 gi|410670661|ref|YP_006923032.1| - 2.9e-53 180.9 0.5 3.4e-53 180.7 0.4 1.0 1 0 0 1 1 1 1 PAC2 family PK_C PF02887.11 gi|410670662|ref|YP_006923033.1| - 2.6e-19 68.8 1.0 3.4e-19 68.5 0.7 1.1 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain Asp_Glu_race PF01177.17 gi|410670662|ref|YP_006923033.1| - 0.019 14.8 0.1 0.024 14.5 0.1 1.2 1 0 0 1 1 1 0 Asp/Glu/Hydantoin racemase FeoA PF04023.9 gi|410670662|ref|YP_006923033.1| - 0.038 13.9 0.0 0.12 12.3 0.0 1.8 1 0 0 1 1 1 0 FeoA domain AP_endonuc_2 PF01261.19 gi|410670662|ref|YP_006923033.1| - 0.094 11.9 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel MTD PF01993.13 gi|410670664|ref|YP_006923035.1| - 3e-94 315.1 2.7 3.3e-94 314.9 1.9 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase HAD PF12710.2 gi|410670665|ref|YP_006923036.1| - 4.4e-16 59.6 0.1 7.7e-16 58.8 0.1 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|410670665|ref|YP_006923036.1| - 1.3e-13 51.1 0.0 3.7e-12 46.3 0.0 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|410670665|ref|YP_006923036.1| - 1.5e-12 48.3 0.0 2.3e-12 47.8 0.0 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|410670665|ref|YP_006923036.1| - 1.5e-06 27.5 0.0 0.038 13.1 0.0 2.1 2 0 0 2 2 2 2 Putative Phosphatase HAD_2 PF13419.1 gi|410670665|ref|YP_006923036.1| - 4e-05 23.8 0.0 0.0002 21.6 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|410670665|ref|YP_006923036.1| - 0.0042 16.4 0.0 0.0094 15.2 0.0 1.5 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Sulfatase PF00884.18 gi|410670665|ref|YP_006923036.1| - 0.033 13.3 0.0 0.036 13.2 0.0 1.1 1 0 0 1 1 1 0 Sulfatase Hydrolase_like PF13242.1 gi|410670665|ref|YP_006923036.1| - 0.07 12.8 0.0 0.18 11.5 0.0 1.7 2 0 0 2 2 2 0 HAD-hyrolase-like HHH PF00633.18 gi|410670665|ref|YP_006923036.1| - 0.077 12.7 0.0 0.23 11.2 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif TBPIP PF07106.8 gi|410670666|ref|YP_006923037.1| - 0.012 15.2 37.3 0.097 12.2 6.1 3.8 1 1 3 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF2935 PF11155.3 gi|410670666|ref|YP_006923037.1| - 3.3 7.8 20.8 2.8 8.0 4.4 3.3 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) GyrI-like PF06445.10 gi|410670669|ref|YP_006923040.1| - 1.9e-09 37.7 0.0 2.2e-09 37.5 0.0 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain DUF3852 PF12963.2 gi|410670670|ref|YP_006923041.1| - 5.6e-18 65.0 3.6 1.3e-17 63.7 2.5 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3852) Carot_N PF09150.5 gi|410670670|ref|YP_006923041.1| - 0.046 13.4 0.0 0.049 13.3 0.0 1.0 1 0 0 1 1 1 0 Orange carotenoid protein, N-terminal STE2 PF02116.10 gi|410670670|ref|YP_006923041.1| - 0.082 11.9 0.1 0.092 11.7 0.1 1.0 1 0 0 1 1 1 0 Fungal pheromone mating factor STE2 GPCR Radical_SAM PF04055.16 gi|410670671|ref|YP_006923042.1| - 1.7e-18 67.3 0.0 2.5e-18 66.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|410670671|ref|YP_006923042.1| - 2.1e-06 27.9 0.0 5.3e-06 26.6 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|410670671|ref|YP_006923042.1| - 8.2e-05 22.7 0.0 0.00013 22.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|410670671|ref|YP_006923042.1| - 0.0032 17.4 0.0 0.0055 16.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DS PF01916.12 gi|410670671|ref|YP_006923042.1| - 0.0041 16.2 0.0 0.0064 15.6 0.0 1.2 1 0 0 1 1 1 1 Deoxyhypusine synthase DUF1906 PF08924.6 gi|410670671|ref|YP_006923042.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) DAO PF01266.19 gi|410670672|ref|YP_006923043.1| - 1e-14 54.2 0.1 6.6e-08 31.8 0.0 2.6 2 1 0 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|410670672|ref|YP_006923043.1| - 4e-10 38.7 0.8 8.3e-07 27.8 0.5 2.3 2 0 0 2 2 2 2 HI0933-like protein Lycopene_cycl PF05834.7 gi|410670672|ref|YP_006923043.1| - 8.3e-10 38.1 0.0 1.1e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|410670672|ref|YP_006923043.1| - 2.1e-07 30.3 0.0 0.0095 15.0 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|410670672|ref|YP_006923043.1| - 4.8e-07 29.2 0.0 7.8e-07 28.5 0.0 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|410670672|ref|YP_006923043.1| - 1e-05 24.5 0.0 2.3e-05 23.4 0.0 1.6 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|410670672|ref|YP_006923043.1| - 0.00022 21.1 0.2 0.00063 19.6 0.1 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|410670672|ref|YP_006923043.1| - 0.00023 20.3 0.0 0.00043 19.4 0.0 1.4 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|410670672|ref|YP_006923043.1| - 0.00081 18.3 0.0 0.0014 17.5 0.0 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|410670672|ref|YP_006923043.1| - 0.0027 17.7 0.1 0.01 15.9 0.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|410670672|ref|YP_006923043.1| - 0.0053 15.4 0.2 0.21 10.1 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase NAD_binding_8 PF13450.1 gi|410670672|ref|YP_006923043.1| - 0.0072 16.3 0.1 0.021 14.8 0.1 1.9 1 1 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Sdh5 PF03937.11 gi|410670672|ref|YP_006923043.1| - 0.048 13.3 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 Flavinator of succinate dehydrogenase Pyr_redox PF00070.22 gi|410670672|ref|YP_006923043.1| - 0.051 13.9 0.1 1.8 8.9 0.0 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase UbiA PF01040.13 gi|410670673|ref|YP_006923044.1| - 3.2e-34 118.3 23.7 3.9e-34 118.0 16.4 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1118 PF06549.7 gi|410670673|ref|YP_006923044.1| - 0.88 9.7 5.2 0.18 11.9 0.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1118) TGT PF01702.13 gi|410670674|ref|YP_006923045.1| - 8.7e-50 169.2 0.0 1.2e-49 168.7 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Glyco_hydro_76 PF03663.9 gi|410670675|ref|YP_006923046.1| - 0.082 12.2 0.1 0.086 12.2 0.0 1.0 1 0 0 1 1 1 0 Glycosyl hydrolase family 76 DUF21 PF01595.15 gi|410670676|ref|YP_006923047.1| - 3.8e-35 120.8 3.4 5.1e-35 120.4 2.4 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 eIF-1a PF01176.14 gi|410670677|ref|YP_006923048.1| - 8e-18 63.6 0.4 9.2e-18 63.4 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.17 gi|410670678|ref|YP_006923049.1| - 3.1e-60 202.7 0.3 4.5e-60 202.2 0.0 1.4 2 0 0 2 2 2 1 RIO1 family Pkinase PF00069.20 gi|410670678|ref|YP_006923049.1| - 7.6e-08 31.8 0.0 1.4e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|410670678|ref|YP_006923049.1| - 6.8e-05 22.0 0.0 0.00073 18.6 0.0 2.0 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|410670678|ref|YP_006923049.1| - 0.0017 18.1 0.0 0.0088 15.8 0.0 2.0 1 1 1 2 2 2 1 Phosphotransferase enzyme family Choline_kinase PF01633.15 gi|410670678|ref|YP_006923049.1| - 0.039 13.5 0.0 0.14 11.6 0.0 1.9 2 0 0 2 2 2 0 Choline/ethanolamine kinase KH_1 PF00013.24 gi|410670679|ref|YP_006923050.1| - 1e-15 57.0 13.1 9.1e-10 38.0 0.3 2.4 2 1 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|410670679|ref|YP_006923050.1| - 7.1e-08 31.9 10.8 1.6e-05 24.4 0.1 2.6 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|410670679|ref|YP_006923050.1| - 0.0052 16.3 9.1 0.48 10.0 0.1 2.4 2 0 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|410670679|ref|YP_006923050.1| - 0.85 9.3 4.7 6.3 6.5 0.8 2.8 2 1 0 2 2 2 0 KH domain DUF1614 PF07758.6 gi|410670680|ref|YP_006923051.1| - 1e-27 96.9 13.2 1.5e-27 96.4 9.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) DUF4395 PF14340.1 gi|410670680|ref|YP_006923051.1| - 1.3 9.0 8.5 2.4 8.2 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4395) KaiC PF06745.8 gi|410670681|ref|YP_006923052.1| - 1.4e-44 151.8 0.0 3.4e-44 150.6 0.0 1.6 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|410670681|ref|YP_006923052.1| - 1.8e-11 43.8 0.0 3.3e-11 42.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|410670681|ref|YP_006923052.1| - 2.1e-07 30.3 0.0 2.7e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein DnaB_C PF03796.10 gi|410670681|ref|YP_006923052.1| - 3.3e-06 26.1 0.0 5.1e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_19 PF13245.1 gi|410670681|ref|YP_006923052.1| - 1.2e-05 24.9 0.0 3.1e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain GvpD PF07088.6 gi|410670681|ref|YP_006923052.1| - 2.8e-05 22.6 0.1 0.03 12.6 0.0 2.2 2 0 0 2 2 2 2 GvpD gas vesicle protein IstB_IS21 PF01695.12 gi|410670681|ref|YP_006923052.1| - 5.8e-05 22.5 0.0 9.9e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_14 PF13173.1 gi|410670681|ref|YP_006923052.1| - 0.00022 21.1 0.0 0.00055 19.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|410670681|ref|YP_006923052.1| - 0.0015 18.4 0.1 0.007 16.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|410670681|ref|YP_006923052.1| - 0.0016 19.2 1.2 0.0026 18.5 0.3 2.2 2 1 0 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|410670681|ref|YP_006923052.1| - 0.0019 18.3 0.0 0.0047 17.0 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|410670681|ref|YP_006923052.1| - 0.0054 17.0 0.1 0.02 15.1 0.1 2.1 2 1 0 2 2 2 1 AAA domain MEDS PF14417.1 gi|410670681|ref|YP_006923052.1| - 0.0062 15.6 0.0 0.014 14.4 0.0 1.6 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain T2SE PF00437.15 gi|410670681|ref|YP_006923052.1| - 0.0076 15.1 0.0 0.014 14.2 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein PAXNEB PF05625.6 gi|410670681|ref|YP_006923052.1| - 0.0088 14.9 0.0 0.014 14.2 0.0 1.2 1 0 0 1 1 1 1 PAXNEB protein NACHT PF05729.7 gi|410670681|ref|YP_006923052.1| - 0.013 15.1 0.0 0.032 13.8 0.0 1.6 1 1 0 1 1 1 0 NACHT domain AAA_24 PF13479.1 gi|410670681|ref|YP_006923052.1| - 0.017 14.7 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|410670681|ref|YP_006923052.1| - 0.024 14.0 0.0 0.039 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain DUF2075 PF09848.4 gi|410670681|ref|YP_006923052.1| - 0.025 13.5 0.0 0.038 12.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PPV_E1_C PF00519.12 gi|410670681|ref|YP_006923052.1| - 0.027 13.1 0.0 0.051 12.1 0.0 1.4 2 0 0 2 2 2 0 Papillomavirus helicase AAA PF00004.24 gi|410670681|ref|YP_006923052.1| - 0.029 14.5 0.0 0.061 13.5 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|410670681|ref|YP_006923052.1| - 0.033 13.9 0.0 0.056 13.1 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_30 PF13604.1 gi|410670681|ref|YP_006923052.1| - 0.033 13.7 0.0 0.069 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|410670681|ref|YP_006923052.1| - 0.042 13.5 0.0 0.084 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|410670681|ref|YP_006923052.1| - 0.045 13.7 0.0 0.15 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF1846 PF08903.6 gi|410670681|ref|YP_006923052.1| - 0.06 11.8 0.0 0.15 10.4 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1846) AAA_11 PF13086.1 gi|410670681|ref|YP_006923052.1| - 0.064 12.8 0.0 0.079 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zot PF05707.7 gi|410670681|ref|YP_006923052.1| - 0.083 12.3 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) MobB PF03205.9 gi|410670681|ref|YP_006923052.1| - 0.093 12.4 0.0 0.25 11.0 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_32 PF13654.1 gi|410670681|ref|YP_006923052.1| - 0.099 11.2 0.1 0.24 9.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain Sec7 PF01369.15 gi|410670681|ref|YP_006923052.1| - 0.11 12.2 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Sec7 domain KTI12 PF08433.5 gi|410670681|ref|YP_006923052.1| - 0.11 11.6 0.0 0.41 9.8 0.0 2.0 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|410670681|ref|YP_006923052.1| - 0.12 12.3 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Sigma54_activat PF00158.21 gi|410670681|ref|YP_006923052.1| - 0.13 11.7 0.0 1.2 8.5 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|410670681|ref|YP_006923052.1| - 0.15 12.2 0.0 0.61 10.2 0.0 2.0 2 0 0 2 2 2 0 RNA helicase Amidohydro_4 PF13147.1 gi|410670682|ref|YP_006923053.1| - 7.2e-31 108.2 0.1 1.6e-30 107.0 0.1 1.6 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|410670682|ref|YP_006923053.1| - 2.9e-21 76.4 0.1 1.3e-20 74.3 0.1 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|410670682|ref|YP_006923053.1| - 2e-12 46.7 1.7 3.2e-12 46.0 0.2 2.1 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|410670682|ref|YP_006923053.1| - 1.4e-06 27.8 0.1 0.0002 20.7 0.0 2.6 3 0 0 3 3 3 2 Amidohydrolase family PBP_like_2 PF12849.2 gi|410670683|ref|YP_006923054.1| - 5.1e-50 170.5 2.1 9.1e-50 169.6 1.5 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|410670683|ref|YP_006923054.1| - 3.5e-21 75.0 0.0 4.5e-21 74.6 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|410670683|ref|YP_006923054.1| - 2.1e-09 37.3 0.0 3.6e-09 36.5 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|410670683|ref|YP_006923054.1| - 0.028 13.7 0.0 0.043 13.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein DUF707 PF05212.7 gi|410670683|ref|YP_006923054.1| - 0.16 11.0 0.0 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF707) BPD_transp_1 PF00528.17 gi|410670684|ref|YP_006923055.1| - 1.9e-22 79.6 12.1 1.9e-22 79.6 8.4 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Gemini_mov PF01708.11 gi|410670684|ref|YP_006923055.1| - 0.39 10.2 2.0 0.96 9.0 1.4 1.6 1 0 0 1 1 1 0 Geminivirus putative movement protein BPD_transp_1 PF00528.17 gi|410670685|ref|YP_006923056.1| - 1.7e-27 96.1 17.5 1.7e-27 96.1 12.1 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|410670686|ref|YP_006923057.1| - 9.3e-29 100.4 0.0 1.2e-28 100.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410670686|ref|YP_006923057.1| - 2.6e-14 53.8 0.1 1.9e-07 31.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|410670686|ref|YP_006923057.1| - 3.1e-07 29.8 0.0 0.00046 19.4 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|410670686|ref|YP_006923057.1| - 0.00015 21.2 0.0 0.00028 20.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|410670686|ref|YP_006923057.1| - 0.00033 21.0 0.0 0.00088 19.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|410670686|ref|YP_006923057.1| - 0.00041 19.5 0.0 0.00066 18.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|410670686|ref|YP_006923057.1| - 0.0024 18.0 0.0 0.011 15.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|410670686|ref|YP_006923057.1| - 0.0034 17.4 0.0 0.029 14.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_15 PF13175.1 gi|410670686|ref|YP_006923057.1| - 0.0054 15.8 1.0 1.9 7.4 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.1 gi|410670686|ref|YP_006923057.1| - 0.0097 15.7 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|410670686|ref|YP_006923057.1| - 0.025 13.9 0.0 0.047 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|410670686|ref|YP_006923057.1| - 0.038 13.4 0.0 0.065 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA PF00004.24 gi|410670686|ref|YP_006923057.1| - 0.051 13.7 0.0 0.36 11.0 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|410670686|ref|YP_006923057.1| - 0.059 14.1 0.0 0.11 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|410670686|ref|YP_006923057.1| - 0.061 11.7 0.1 1.4 7.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|410670686|ref|YP_006923057.1| - 0.061 11.9 0.0 0.081 11.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF3465 PF11948.3 gi|410670686|ref|YP_006923057.1| - 0.092 12.5 0.1 0.49 10.2 0.0 2.1 3 0 0 3 3 2 0 Protein of unknown function (DUF3465) AAA_18 PF13238.1 gi|410670686|ref|YP_006923057.1| - 0.095 13.0 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|410670686|ref|YP_006923057.1| - 0.11 12.6 0.0 0.29 11.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase PhoU PF01895.14 gi|410670687|ref|YP_006923058.1| - 1.4e-39 134.4 14.4 1.4e-21 76.7 3.0 2.1 2 0 0 2 2 2 2 PhoU domain DNA_pol_B PF00136.16 gi|410670688|ref|YP_006923059.1| - 5.5e-115 384.8 0.0 7.4e-115 384.3 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|410670688|ref|YP_006923059.1| - 5e-58 196.5 0.0 7.2e-58 195.9 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|410670688|ref|YP_006923059.1| - 0.015 14.8 0.0 0.035 13.6 0.0 1.5 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Ribosomal_L17 PF01196.14 gi|410670688|ref|YP_006923059.1| - 0.034 14.7 0.2 0.18 12.3 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein L17 S-layer PF07752.6 gi|410670690|ref|YP_006923061.1| - 1.9e-210 695.8 40.4 3e-71 239.6 6.2 3.0 3 0 0 3 3 3 3 S-layer protein DUF2702 PF10863.3 gi|410670690|ref|YP_006923061.1| - 1.5e-05 24.7 0.0 3.2 7.4 0.0 3.3 3 0 0 3 3 3 3 Protein of unknown function (DUF2702) PQQ PF01011.16 gi|410670690|ref|YP_006923061.1| - 0.00051 19.4 2.2 3.5 7.3 0.0 4.0 3 0 0 3 3 3 2 PQQ enzyme repeat Myb_DNA-bind_2 PF08914.6 gi|410670690|ref|YP_006923061.1| - 0.00052 19.7 0.6 20 5.0 0.0 3.8 3 0 0 3 3 3 0 Rap1 Myb domain Crystall PF00030.14 gi|410670690|ref|YP_006923061.1| - 0.0071 16.2 1.1 51 3.8 0.0 4.4 5 0 0 5 5 5 0 Beta/Gamma crystallin DUF3653 PF12375.3 gi|410670690|ref|YP_006923061.1| - 0.017 15.3 0.1 76 3.6 0.0 3.4 3 0 0 3 3 3 0 Phage protein Glucosaminidase PF01832.15 gi|410670690|ref|YP_006923061.1| - 0.031 14.4 0.3 44 4.1 0.0 3.2 3 0 0 3 3 3 0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HgmA PF04209.8 gi|410670690|ref|YP_006923061.1| - 0.21 9.9 1.9 24 3.1 0.0 3.0 3 0 0 3 3 3 0 homogentisate 1,2-dioxygenase DUF2874 PF11396.3 gi|410670690|ref|YP_006923061.1| - 1.6 8.7 10.1 36 4.4 0.2 3.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2874) KaiC PF06745.8 gi|410670691|ref|YP_006923062.1| - 1.9e-72 243.0 0.4 2.2e-72 242.8 0.3 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|410670691|ref|YP_006923062.1| - 2.2e-07 30.4 0.0 3.4e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|410670691|ref|YP_006923062.1| - 6.7e-06 24.6 0.1 8.7e-06 24.3 0.0 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein ATP-synt_ab PF00006.20 gi|410670691|ref|YP_006923062.1| - 0.0043 16.5 0.0 0.0061 16.0 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain DnaB_C PF03796.10 gi|410670691|ref|YP_006923062.1| - 0.032 13.1 0.0 0.16 10.8 0.0 1.9 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain PAXNEB PF05625.6 gi|410670691|ref|YP_006923062.1| - 0.095 11.5 0.3 0.3 9.8 0.0 1.7 1 1 0 2 2 2 0 PAXNEB protein AAA_18 PF13238.1 gi|410670691|ref|YP_006923062.1| - 0.11 12.8 3.1 2.1 8.6 2.2 2.4 1 1 0 1 1 1 0 AAA domain RecA PF00154.16 gi|410670691|ref|YP_006923062.1| - 0.12 11.3 0.1 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein ResIII PF04851.10 gi|410670691|ref|YP_006923062.1| - 0.13 12.0 0.1 0.27 11.0 0.1 1.5 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Zot PF05707.7 gi|410670691|ref|YP_006923062.1| - 0.2 11.1 0.8 0.65 9.4 0.5 2.1 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) KaiC PF06745.8 gi|410670692|ref|YP_006923063.1| - 1.3e-73 246.8 0.0 6.9e-45 152.9 0.0 2.2 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|410670692|ref|YP_006923063.1| - 9.3e-13 48.0 0.0 2.2e-05 23.9 0.0 2.6 2 1 0 2 2 2 2 AAA domain DnaB_C PF03796.10 gi|410670692|ref|YP_006923063.1| - 6.9e-09 34.9 0.0 0.00092 18.1 0.0 2.2 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain GvpD PF07088.6 gi|410670692|ref|YP_006923063.1| - 3.7e-05 22.2 0.3 0.42 8.8 0.0 3.7 4 0 0 4 4 4 2 GvpD gas vesicle protein AAA_10 PF12846.2 gi|410670692|ref|YP_006923063.1| - 0.00066 19.2 0.0 0.16 11.4 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain IstB_IS21 PF01695.12 gi|410670692|ref|YP_006923063.1| - 0.00077 18.9 0.3 0.012 15.0 0.0 2.8 3 0 0 3 3 3 1 IstB-like ATP binding protein DUF2075 PF09848.4 gi|410670692|ref|YP_006923063.1| - 0.00094 18.2 0.0 0.45 9.4 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.21 gi|410670692|ref|YP_006923063.1| - 0.0019 17.6 0.2 0.36 10.2 0.0 2.7 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_22 PF13401.1 gi|410670692|ref|YP_006923063.1| - 0.0085 16.2 0.0 0.42 10.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|410670692|ref|YP_006923063.1| - 0.011 15.5 0.3 0.16 11.8 0.0 2.7 3 1 0 3 3 3 0 AAA domain AAA_19 PF13245.1 gi|410670692|ref|YP_006923063.1| - 0.012 15.2 0.0 2.9 7.7 0.0 2.4 2 0 0 2 2 2 0 Part of AAA domain AAA_16 PF13191.1 gi|410670692|ref|YP_006923063.1| - 0.013 15.4 0.2 0.1 12.5 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain DAP3 PF10236.4 gi|410670692|ref|YP_006923063.1| - 0.076 11.9 0.0 0.73 8.7 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 TrwB_AAD_bind PF10412.4 gi|410670692|ref|YP_006923063.1| - 0.079 11.5 0.0 0.15 10.6 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain RecA PF00154.16 gi|410670692|ref|YP_006923063.1| - 0.097 11.7 0.0 1.2 8.1 0.0 2.0 2 0 0 2 2 2 0 recA bacterial DNA recombination protein T2SE PF00437.15 gi|410670692|ref|YP_006923063.1| - 0.13 11.0 0.0 11 4.8 0.1 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein PAXNEB PF05625.6 gi|410670692|ref|YP_006923063.1| - 0.17 10.6 3.6 2 7.1 0.1 3.0 3 0 0 3 3 3 0 PAXNEB protein MarR PF01047.17 gi|410670693|ref|YP_006923064.1| - 5.5e-06 26.0 0.0 7.1e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|410670693|ref|YP_006923064.1| - 9.7e-06 25.3 0.0 1.1e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|410670693|ref|YP_006923064.1| - 5.9e-05 22.6 0.0 6.4e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|410670693|ref|YP_006923064.1| - 6.6e-05 22.5 0.0 8.4e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|410670693|ref|YP_006923064.1| - 0.00034 20.8 0.0 0.00041 20.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|410670693|ref|YP_006923064.1| - 0.00081 19.2 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.1 gi|410670693|ref|YP_006923064.1| - 0.0039 16.5 0.2 0.0063 15.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HemN_C PF06969.11 gi|410670693|ref|YP_006923064.1| - 0.0062 16.5 0.0 0.0076 16.2 0.0 1.2 1 0 0 1 1 1 1 HemN C-terminal domain DUF2250 PF10007.4 gi|410670693|ref|YP_006923064.1| - 0.0065 16.3 0.3 0.017 15.0 0.2 1.6 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|410670693|ref|YP_006923064.1| - 0.0073 16.4 0.0 0.0091 16.0 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator DUF1803 PF08820.5 gi|410670693|ref|YP_006923064.1| - 0.014 15.0 0.0 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) SelB-wing_2 PF09106.6 gi|410670693|ref|YP_006923064.1| - 0.029 14.2 0.0 0.043 13.7 0.0 1.2 1 0 0 1 1 1 0 Elongation factor SelB, winged helix TFIIE_alpha PF02002.12 gi|410670693|ref|YP_006923064.1| - 0.047 13.1 0.2 0.062 12.8 0.1 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit Penicillinase_R PF03965.11 gi|410670693|ref|YP_006923064.1| - 0.06 13.4 0.0 0.085 12.9 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor DUF4423 PF14394.1 gi|410670693|ref|YP_006923064.1| - 0.068 12.7 0.0 0.075 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) RPA_C PF08784.6 gi|410670693|ref|YP_006923064.1| - 0.077 13.4 0.1 0.095 13.1 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal FeoC PF09012.5 gi|410670693|ref|YP_006923064.1| - 0.11 12.1 0.1 0.23 11.1 0.1 1.4 2 0 0 2 2 2 0 FeoC like transcriptional regulator Rpr2 PF04032.11 gi|410670696|ref|YP_006923067.1| - 5.4e-19 67.8 0.1 6.9e-19 67.5 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF164 PF02591.10 gi|410670696|ref|YP_006923067.1| - 0.011 15.5 2.3 0.024 14.4 1.6 1.5 1 0 0 1 1 1 0 Putative zinc ribbon domain DZR PF12773.2 gi|410670696|ref|YP_006923067.1| - 0.017 14.8 1.4 0.047 13.4 1.0 1.7 1 1 0 1 1 1 0 Double zinc ribbon Lactamase_B_3 PF13483.1 gi|410670697|ref|YP_006923068.1| - 3.9e-34 117.7 0.0 4.9e-34 117.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|410670697|ref|YP_006923068.1| - 3.5e-12 46.2 0.0 6.7e-12 45.3 0.0 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|410670697|ref|YP_006923068.1| - 0.035 13.7 2.0 0.04 13.5 0.3 1.9 1 1 1 2 2 2 0 Metallo-beta-lactamase superfamily tRNA_deacylase PF04414.7 gi|410670698|ref|YP_006923069.1| - 7.6e-68 227.8 0.0 1.4e-67 226.9 0.0 1.4 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DUF1749 PF08538.5 gi|410670698|ref|YP_006923069.1| - 0.087 11.6 1.1 0.21 10.4 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1749) DUF4035 PF13227.1 gi|410670698|ref|YP_006923069.1| - 0.13 11.6 0.0 0.29 10.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4035) FtsZ_C PF12327.3 gi|410670699|ref|YP_006923070.1| - 2.6e-35 120.3 1.7 2.6e-35 120.3 1.2 2.0 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|410670699|ref|YP_006923070.1| - 4.8e-35 121.3 0.3 1.4e-34 119.8 0.2 1.7 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain SecE PF00584.15 gi|410670700|ref|YP_006923071.1| - 0.0096 15.4 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex CbtB PF09489.5 gi|410670700|ref|YP_006923071.1| - 0.13 12.2 0.1 0.16 11.8 0.1 1.2 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtB) Spt5-NGN PF03439.8 gi|410670701|ref|YP_006923072.1| - 4e-25 87.3 0.3 5.9e-25 86.8 0.2 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|410670701|ref|YP_006923072.1| - 3.9e-06 26.3 2.4 5.3e-05 22.7 0.1 2.9 3 0 0 3 3 3 1 KOW motif NusG PF02357.14 gi|410670701|ref|YP_006923072.1| - 0.001 19.2 0.0 0.0038 17.4 0.0 2.0 1 1 0 1 1 1 1 Transcription termination factor nusG Ribosomal_L11_N PF03946.9 gi|410670702|ref|YP_006923073.1| - 2.3e-25 87.7 1.4 3.6e-25 87.1 1.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|410670702|ref|YP_006923073.1| - 5.9e-19 67.9 0.8 5.9e-19 67.9 0.5 1.5 2 0 0 2 2 2 1 Ribosomal protein L11, RNA binding domain Prp18 PF02840.10 gi|410670702|ref|YP_006923073.1| - 0.022 14.5 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 Prp18 domain Ribosomal_L1 PF00687.16 gi|410670703|ref|YP_006923074.1| - 5.8e-47 159.8 0.2 6.8e-47 159.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family SIMPL PF04402.9 gi|410670703|ref|YP_006923074.1| - 0.062 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF541) Ribosomal_L10 PF00466.15 gi|410670704|ref|YP_006923075.1| - 1.4e-25 89.0 0.2 3.2e-25 87.9 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|410670704|ref|YP_006923075.1| - 2.2e-08 34.3 12.4 1.2e-07 31.9 8.6 2.3 1 1 0 1 1 1 1 60s Acidic ribosomal protein HSP90 PF00183.13 gi|410670704|ref|YP_006923075.1| - 0.34 9.2 0.0 0.34 9.2 0.0 2.0 2 0 0 2 2 2 0 Hsp90 protein Ribosomal_60s PF00428.14 gi|410670705|ref|YP_006923076.1| - 3.2e-18 65.9 24.1 3.7e-18 65.6 16.7 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein HTH_Tnp_Tc3_2 PF01498.13 gi|410670705|ref|YP_006923076.1| - 0.029 14.4 0.0 0.045 13.8 0.0 1.2 1 0 0 1 1 1 0 Transposase CAP_N PF01213.14 gi|410670705|ref|YP_006923076.1| - 0.078 12.2 1.5 0.094 11.9 1.1 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal PepSY_2 PF13670.1 gi|410670705|ref|YP_006923076.1| - 0.23 11.3 16.1 2.4 8.1 0.0 2.4 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF1631 PF07793.6 gi|410670705|ref|YP_006923076.1| - 0.34 8.9 4.1 0.37 8.8 2.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) DEC-1_N PF04625.8 gi|410670705|ref|YP_006923076.1| - 1.4 7.5 8.1 1.4 7.5 5.6 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region ABC1 PF03109.11 gi|410670706|ref|YP_006923077.1| - 3.3e-26 91.5 0.0 6e-26 90.7 0.0 1.4 1 0 0 1 1 1 1 ABC1 family RIO1 PF01163.17 gi|410670706|ref|YP_006923077.1| - 1.9e-09 37.1 0.4 1.1e-08 34.6 0.0 2.2 2 0 0 2 2 2 1 RIO1 family WaaY PF06176.6 gi|410670706|ref|YP_006923077.1| - 1.8e-05 24.1 0.4 3.8e-05 23.0 0.2 1.5 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase PF00069.20 gi|410670706|ref|YP_006923077.1| - 0.00017 20.8 0.1 0.00076 18.7 0.1 1.9 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|410670706|ref|YP_006923077.1| - 0.0015 18.3 0.0 0.13 12.0 0.1 2.2 2 0 0 2 2 2 1 Phosphotransferase enzyme family Nop16 PF09420.5 gi|410670706|ref|YP_006923077.1| - 0.027 14.5 0.0 0.047 13.8 0.0 1.3 1 0 0 1 1 1 0 Ribosome biogenesis protein Nop16 ABC_tran PF00005.22 gi|410670707|ref|YP_006923078.1| - 1.4e-31 109.5 0.0 1.5e-30 106.3 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|410670707|ref|YP_006923078.1| - 4.3e-13 49.8 0.5 3e-08 33.9 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|410670707|ref|YP_006923078.1| - 2.1e-07 30.3 0.0 2.2e-05 23.6 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|410670707|ref|YP_006923078.1| - 1.1e-06 28.1 0.3 0.00025 20.3 0.1 2.8 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|410670707|ref|YP_006923078.1| - 0.0006 19.2 0.0 0.0089 15.4 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|410670707|ref|YP_006923078.1| - 0.00083 19.7 0.1 0.0015 18.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|410670707|ref|YP_006923078.1| - 0.0014 18.5 0.1 0.024 14.5 0.1 2.2 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|410670707|ref|YP_006923078.1| - 0.0033 16.6 0.1 0.0063 15.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|410670707|ref|YP_006923078.1| - 0.012 15.1 0.0 0.022 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|410670707|ref|YP_006923078.1| - 0.015 14.7 0.2 1.9 7.9 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein SbcCD_C PF13558.1 gi|410670707|ref|YP_006923078.1| - 0.021 14.7 0.0 0.041 13.8 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.1 gi|410670707|ref|YP_006923078.1| - 0.022 14.3 0.0 0.065 12.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain Memo PF01875.12 gi|410670707|ref|YP_006923078.1| - 0.031 13.1 0.0 0.058 12.2 0.0 1.5 1 1 0 1 1 1 0 Memo-like protein AAA_28 PF13521.1 gi|410670707|ref|YP_006923078.1| - 0.035 14.0 0.0 0.071 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|410670707|ref|YP_006923078.1| - 0.073 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.1 gi|410670707|ref|YP_006923078.1| - 0.088 12.9 0.1 1.5 8.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|410670707|ref|YP_006923078.1| - 0.094 12.1 0.2 3.6 6.9 0.1 2.3 1 1 0 2 2 2 0 AAA-like domain Y1_Tnp PF01797.11 gi|410670707|ref|YP_006923078.1| - 0.11 12.3 1.8 0.2 11.5 1.2 1.3 1 0 0 1 1 1 0 Transposase IS200 like ATP-synt_ab PF00006.20 gi|410670707|ref|YP_006923078.1| - 0.11 11.9 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.24 gi|410670707|ref|YP_006923078.1| - 0.12 12.6 0.2 0.76 9.9 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CbiQ PF02361.11 gi|410670708|ref|YP_006923079.1| - 1.1e-29 103.5 16.1 1.5e-29 103.2 11.2 1.1 1 0 0 1 1 1 1 Cobalt transport protein CarboxypepD_reg PF13620.1 gi|410670709|ref|YP_006923080.1| - 0.00011 22.2 0.1 0.00016 21.6 0.0 1.3 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DOMON PF03351.12 gi|410670709|ref|YP_006923080.1| - 0.049 13.5 0.0 0.061 13.2 0.0 1.3 1 0 0 1 1 1 0 DOMON domain Msg2_C PF12373.3 gi|410670709|ref|YP_006923080.1| - 0.13 11.5 0.2 0.33 10.1 0.1 1.7 1 0 0 1 1 1 0 Major surface glycoprotein 2 C terminal CbiM PF01891.11 gi|410670710|ref|YP_006923081.1| - 7.8e-50 169.3 20.8 8.7e-50 169.1 14.4 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF4198 PF10670.4 gi|410670711|ref|YP_006923082.1| - 1.4e-23 84.0 0.6 2.6e-23 83.1 0.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) DUF3463 PF11946.3 gi|410670713|ref|YP_006923084.1| - 6e-05 22.6 0.2 9.6e-05 22.0 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3463) SPASM PF13186.1 gi|410670713|ref|YP_006923084.1| - 0.0024 18.1 4.3 0.0032 17.7 1.5 2.1 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Cohesin PF00963.13 gi|410670715|ref|YP_006923086.1| - 8.1e-07 28.9 0.1 9.9e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Cohesin domain SAM_adeno_trans PF01887.11 gi|410670717|ref|YP_006923088.1| - 3.6e-87 291.6 0.6 4.1e-87 291.4 0.4 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase ThiC PF01964.13 gi|410670718|ref|YP_006923089.1| - 2.4e-173 576.5 0.6 2.7e-173 576.3 0.4 1.0 1 0 0 1 1 1 1 ThiC family DUF2059 PF09832.4 gi|410670719|ref|YP_006923090.1| - 0.12 12.4 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2059) Glycos_transf_2 PF00535.21 gi|410670720|ref|YP_006923091.1| - 7.3e-19 68.0 0.0 1.1e-18 67.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|410670720|ref|YP_006923091.1| - 9.6e-11 41.9 0.0 1.5e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|410670720|ref|YP_006923091.1| - 0.0015 18.7 0.0 0.0029 17.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 HTH_39 PF14090.1 gi|410670720|ref|YP_006923091.1| - 0.028 13.8 0.1 0.089 12.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_holin_1 PF04531.8 gi|410670720|ref|YP_006923091.1| - 0.26 11.3 1.1 0.49 10.4 0.7 1.4 1 0 0 1 1 1 0 Bacteriophage holin DUF3955 PF13127.1 gi|410670720|ref|YP_006923091.1| - 3.1 7.4 10.9 0.31 10.6 1.8 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3955) TBP PF00352.16 gi|410670721|ref|YP_006923092.1| - 1.5e-65 216.5 0.2 4.2e-32 109.3 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|410670721|ref|YP_006923092.1| - 3.8e-06 26.8 0.0 0.13 12.3 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF3252 PF11623.3 gi|410670721|ref|YP_006923092.1| - 0.00065 19.0 0.0 0.72 9.3 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF3252) DUF387 PF04079.11 gi|410670722|ref|YP_006923093.1| - 3.9e-38 130.3 0.1 7.9e-37 126.0 0.0 2.6 3 0 0 3 3 3 1 Putative transcriptional regulators (Ypuh-like) HTH_20 PF12840.2 gi|410670722|ref|YP_006923093.1| - 0.0021 17.8 0.3 0.0058 16.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|410670722|ref|YP_006923093.1| - 0.02 14.5 0.0 0.25 11.0 0.0 2.4 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB YozD PF14162.1 gi|410670722|ref|YP_006923093.1| - 0.088 12.8 2.2 1.1 9.3 0.1 2.7 1 1 1 2 2 2 0 YozD-like protein DUF4269 PF14091.1 gi|410670722|ref|YP_006923093.1| - 0.089 12.7 0.0 0.25 11.2 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4269) ScpA_ScpB PF02616.9 gi|410670723|ref|YP_006923094.1| - 9.1e-36 123.6 2.3 1.7e-35 122.7 1.6 1.4 1 1 0 1 1 1 1 ScpA/B protein SMC_N PF02463.14 gi|410670724|ref|YP_006923095.1| - 1.4e-70 236.9 13.3 3.3e-70 235.7 9.3 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|410670724|ref|YP_006923095.1| - 2.4e-32 111.4 0.0 2e-31 108.4 0.0 2.7 3 0 0 3 3 2 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.1 gi|410670724|ref|YP_006923095.1| - 3.4e-16 60.1 7.8 3.4e-16 60.1 5.4 6.7 2 2 2 4 4 1 1 AAA domain AAA_21 PF13304.1 gi|410670724|ref|YP_006923095.1| - 1.4e-07 31.7 1.7 7.6e-06 26.0 0.3 5.0 4 2 0 4 4 4 2 AAA domain AAA_13 PF13166.1 gi|410670724|ref|YP_006923095.1| - 1.5e-07 30.3 21.7 1.5e-07 30.3 15.0 6.1 3 2 2 5 5 5 2 AAA domain AAA_29 PF13555.1 gi|410670724|ref|YP_006923095.1| - 1.6e-07 30.7 0.0 3.3e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|410670724|ref|YP_006923095.1| - 4.3e-05 22.7 0.4 4.3e-05 22.7 0.2 4.4 3 2 0 3 3 2 1 AAA ATPase domain Reo_sigmaC PF04582.7 gi|410670724|ref|YP_006923095.1| - 0.00063 19.0 32.6 0.058 12.5 1.1 5.3 2 2 2 5 5 5 4 Reovirus sigma C capsid protein Myosin_tail_1 PF01576.14 gi|410670724|ref|YP_006923095.1| - 0.00087 17.1 30.3 0.00087 17.1 21.0 5.1 2 2 3 5 5 5 2 Myosin tail DUF342 PF03961.8 gi|410670724|ref|YP_006923095.1| - 0.0032 15.9 10.9 0.0032 15.9 7.6 7.3 3 2 4 7 7 7 1 Protein of unknown function (DUF342) IncA PF04156.9 gi|410670724|ref|YP_006923095.1| - 0.0049 16.4 126.7 0.14 11.7 16.1 8.1 2 2 4 7 7 7 4 IncA protein NPV_P10 PF05531.7 gi|410670724|ref|YP_006923095.1| - 0.015 15.5 0.6 0.015 15.5 0.4 8.3 7 1 2 9 9 9 0 Nucleopolyhedrovirus P10 protein DUF948 PF06103.6 gi|410670724|ref|YP_006923095.1| - 0.019 14.8 0.3 0.019 14.8 0.2 7.3 6 3 3 9 9 9 0 Bacterial protein of unknown function (DUF948) NIL PF09383.5 gi|410670724|ref|YP_006923095.1| - 0.019 14.5 0.8 3.5 7.2 0.0 3.9 3 0 0 3 3 3 0 NIL domain Kinetocho_Slk19 PF12709.2 gi|410670724|ref|YP_006923095.1| - 0.023 14.7 0.5 0.023 14.7 0.4 9.1 8 3 4 12 12 10 0 Central kinetochore-associated DUF2937 PF11157.3 gi|410670724|ref|YP_006923095.1| - 0.045 13.0 12.5 0.19 11.0 0.3 4.7 4 1 1 5 5 5 0 Protein of unknown function (DUF2937) LPP PF04728.8 gi|410670724|ref|YP_006923095.1| - 0.055 13.2 11.0 1.6 8.5 0.1 4.4 4 0 0 4 4 3 0 Lipoprotein leucine-zipper DUF869 PF05911.6 gi|410670724|ref|YP_006923095.1| - 0.11 10.6 90.7 0.0097 14.2 17.2 3.5 2 2 1 3 3 3 0 Plant protein of unknown function (DUF869) CENP-F_leu_zip PF10473.4 gi|410670724|ref|YP_006923095.1| - 0.26 11.1 122.4 0.073 12.9 10.4 7.4 2 2 4 7 7 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_27 PF13514.1 gi|410670724|ref|YP_006923095.1| - 0.27 8.8 82.5 0.14 9.8 12.6 3.2 2 1 1 3 3 3 0 AAA domain DUF3584 PF12128.3 gi|410670724|ref|YP_006923095.1| - 3.4 4.8 94.5 0.066 10.5 9.7 4.2 2 2 2 4 4 4 0 Protein of unknown function (DUF3584) Spc7 PF08317.6 gi|410670724|ref|YP_006923095.1| - 5.3 5.6 102.8 0.21 10.2 7.7 6.5 2 2 5 7 7 7 0 Spc7 kinetochore protein YvrJ PF12841.2 gi|410670724|ref|YP_006923095.1| - 8.2 5.8 10.5 8.6 5.7 0.4 4.4 4 0 0 4 4 3 0 YvrJ protein family ATG16 PF08614.6 gi|410670724|ref|YP_006923095.1| - 8.3 6.1 96.7 0.082 12.7 4.3 7.0 2 2 5 7 7 6 0 Autophagy protein 16 (ATG16) FliJ PF02050.11 gi|410670724|ref|YP_006923095.1| - 8.4 6.4 82.9 0.6 10.1 2.1 8.8 3 2 6 9 9 9 0 Flagellar FliJ protein Bacillus_HBL PF05791.6 gi|410670724|ref|YP_006923095.1| - 8.9 5.6 46.4 0.76 9.1 2.5 6.8 4 2 2 6 6 6 0 Bacillus haemolytic enterotoxin (HBL) COG2 PF06148.6 gi|410670725|ref|YP_006923096.1| - 3e-05 23.9 4.8 4.7e-05 23.2 3.3 1.3 1 0 0 1 1 1 1 COG (conserved oligomeric Golgi) complex component, COG2 Baculo_PEP_C PF04513.7 gi|410670725|ref|YP_006923096.1| - 0.026 14.3 0.5 0.043 13.6 0.3 1.3 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2365 PF10157.4 gi|410670725|ref|YP_006923096.1| - 0.026 14.4 1.1 0.047 13.5 0.7 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2365) NPV_P10 PF05531.7 gi|410670725|ref|YP_006923096.1| - 0.044 14.0 4.1 0.075 13.2 0.6 2.3 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein FlaC_arch PF05377.6 gi|410670725|ref|YP_006923096.1| - 4.8 7.1 6.8 23 5.0 0.6 2.6 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) SMC_N PF02463.14 gi|410670726|ref|YP_006923097.1| - 5.3e-23 81.4 0.0 1.3e-22 80.1 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|410670726|ref|YP_006923097.1| - 2.8e-13 50.6 73.4 0.65 10.2 50.9 5.1 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|410670726|ref|YP_006923097.1| - 1.5e-11 44.7 13.1 6.8e-08 32.8 0.8 3.6 2 2 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|410670726|ref|YP_006923097.1| - 1.4e-06 27.7 0.0 2.7e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|410670726|ref|YP_006923097.1| - 4.7e-05 23.2 0.0 0.00011 21.9 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF3584 PF12128.3 gi|410670726|ref|YP_006923097.1| - 0.0061 13.9 51.9 0.023 12.0 17.9 4.2 2 1 2 4 4 4 2 Protein of unknown function (DUF3584) AAA_13 PF13166.1 gi|410670726|ref|YP_006923097.1| - 0.014 13.9 55.3 0.0085 14.6 8.9 4.7 2 1 2 4 4 4 0 AAA domain AAA_33 PF13671.1 gi|410670726|ref|YP_006923097.1| - 0.046 13.6 0.1 1.1 9.0 0.0 2.8 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|410670726|ref|YP_006923097.1| - 0.13 12.1 0.0 0.13 12.1 0.0 3.3 3 2 0 3 3 3 0 AAA ATPase domain ATG16 PF08614.6 gi|410670726|ref|YP_006923097.1| - 0.52 10.1 54.0 0.058 13.2 11.3 5.2 2 2 3 5 5 5 0 Autophagy protein 16 (ATG16) ABC_tran PF00005.22 gi|410670726|ref|YP_006923097.1| - 0.6 10.4 0.0 0.6 10.4 0.0 5.2 2 1 1 3 3 2 0 ABC transporter CENP-F_leu_zip PF10473.4 gi|410670726|ref|YP_006923097.1| - 2.3 8.0 71.3 5.3 6.9 7.2 5.6 3 2 2 5 5 5 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Reo_sigmaC PF04582.7 gi|410670726|ref|YP_006923097.1| - 2.4 7.2 19.8 0.12 11.4 2.5 4.2 1 1 3 5 5 5 0 Reovirus sigma C capsid protein Metallophos_2 PF12850.2 gi|410670727|ref|YP_006923098.1| - 4.9e-16 58.9 0.1 1.2e-15 57.7 0.1 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|410670727|ref|YP_006923098.1| - 3.8e-15 55.8 0.6 6.7e-15 55.0 0.4 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Lectin_N PF03954.9 gi|410670731|ref|YP_006923102.1| - 0.023 14.1 0.0 0.029 13.7 0.0 1.2 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain DUF1628 PF07790.6 gi|410670733|ref|YP_006923104.1| - 0.00041 21.0 4.0 0.0015 19.2 1.5 2.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) ABC2_membrane_2 PF12679.2 gi|410670734|ref|YP_006923105.1| - 0.1 11.4 0.8 0.1 11.4 0.6 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Fijivirus_P9-2 PF06837.6 gi|410670734|ref|YP_006923105.1| - 0.17 11.0 1.3 0.16 11.0 0.9 1.0 1 0 0 1 1 1 0 Fijivirus P9-2 protein TadE PF07811.7 gi|410670735|ref|YP_006923106.1| - 1 9.3 3.7 2 8.3 2.5 1.5 1 0 0 1 1 1 0 TadE-like protein CPSase_sm_chain PF00988.17 gi|410670737|ref|YP_006923108.1| - 0.096 12.1 0.2 3.3 7.2 0.0 2.1 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase small chain, CPSase domain DUF3678 PF12435.3 gi|410670739|ref|YP_006923110.1| - 2.3 7.8 4.9 14 5.3 3.4 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3678) Cna_B PF05738.8 gi|410670740|ref|YP_006923111.1| - 2.1e-25 88.2 11.4 1.3e-12 47.3 0.5 2.3 2 0 0 2 2 2 2 Cna protein B-type domain CarboxypepD_reg PF13620.1 gi|410670740|ref|YP_006923111.1| - 5.3e-15 55.2 1.4 1.9e-08 34.2 0.1 2.4 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain Pollen_Ole_e_I PF01190.12 gi|410670740|ref|YP_006923111.1| - 3.1e-08 33.3 0.0 0.0015 18.2 0.0 2.4 2 0 0 2 2 2 2 Pollen proteins Ole e I like DUF4480 PF13715.1 gi|410670740|ref|YP_006923111.1| - 6.3e-07 29.3 0.5 0.042 13.8 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) MG1 PF11974.3 gi|410670740|ref|YP_006923111.1| - 5.2e-06 26.9 0.1 0.015 15.8 0.0 2.4 2 0 0 2 2 2 2 Alpha-2-macroglobulin MG1 domain Dioxygenase_C PF00775.16 gi|410670740|ref|YP_006923111.1| - 6.3e-06 25.5 0.2 0.037 13.2 0.0 2.2 2 0 0 2 2 2 2 Dioxygenase DUF290 PF01060.18 gi|410670740|ref|YP_006923111.1| - 0.00022 21.1 0.0 0.22 11.5 0.0 2.5 2 0 0 2 2 2 2 Transthyretin-like family Transthyretin PF00576.16 gi|410670740|ref|YP_006923111.1| - 0.00073 19.3 0.1 0.29 11.0 0.0 2.9 2 1 1 3 3 3 1 HIUase/Transthyretin family Big_1 PF02369.11 gi|410670740|ref|YP_006923111.1| - 0.001 18.9 0.6 0.28 11.1 0.4 2.4 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) DUF3244 PF11589.3 gi|410670740|ref|YP_006923111.1| - 0.0016 18.1 0.1 0.58 9.8 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3244) DUF4198 PF10670.4 gi|410670740|ref|YP_006923111.1| - 0.042 13.8 0.2 1.2 9.0 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) VCBS PF13517.1 gi|410670740|ref|YP_006923111.1| - 9.8 6.6 9.6 36 4.8 0.0 3.8 4 0 0 4 4 4 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella VWA_2 PF13519.1 gi|410670742|ref|YP_006923113.1| - 3.1e-44 151.1 7.5 1e-25 90.8 0.4 4.1 4 0 0 4 4 4 2 von Willebrand factor type A domain VWA PF00092.23 gi|410670742|ref|YP_006923113.1| - 5.4e-30 104.4 5.5 2.8e-22 79.2 0.2 3.4 4 0 0 4 4 4 2 von Willebrand factor type A domain VWA_3 PF13768.1 gi|410670742|ref|YP_006923113.1| - 9.6e-13 48.1 0.0 5.5e-05 22.8 0.0 2.5 2 0 0 2 2 2 2 von Willebrand factor type A domain Big_1 PF02369.11 gi|410670742|ref|YP_006923113.1| - 5.4e-11 42.2 35.6 3.6e-07 30.0 4.0 5.5 4 0 0 4 4 4 3 Bacterial Ig-like domain (group 1) vWA-TerF-like PF10138.4 gi|410670742|ref|YP_006923113.1| - 6.3e-06 26.1 0.3 0.002 17.9 0.0 2.4 1 1 1 2 2 2 2 vWA found in TerF C terminus VWA_CoxE PF05762.9 gi|410670742|ref|YP_006923113.1| - 8.3e-05 21.8 4.7 0.047 12.8 0.1 3.3 2 1 1 3 3 3 2 VWA domain containing CoxE-like protein CobT_C PF11775.3 gi|410670742|ref|YP_006923113.1| - 0.064 12.6 0.1 0.29 10.5 0.0 2.1 2 0 0 2 2 2 0 Cobalamin biosynthesis protein CobT VWA domain Pro_isomerase PF00160.16 gi|410670743|ref|YP_006923114.1| - 4.9e-48 163.2 0.3 5.9e-48 163.0 0.2 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SBP_bac_11 PF13531.1 gi|410670744|ref|YP_006923115.1| - 2.9e-53 180.8 0.0 3.3e-53 180.6 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|410670744|ref|YP_006923115.1| - 4.2e-15 56.2 0.4 1.8e-13 50.9 0.3 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|410670744|ref|YP_006923115.1| - 8.9e-05 21.9 0.0 0.00016 21.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.2 gi|410670744|ref|YP_006923115.1| - 0.00013 21.5 0.4 0.00024 20.6 0.2 1.4 1 1 0 1 1 1 1 PBP superfamily domain BPD_transp_1 PF00528.17 gi|410670745|ref|YP_006923116.1| - 7.3e-20 71.2 17.2 7.3e-20 71.2 11.9 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component YesK PF14150.1 gi|410670745|ref|YP_006923116.1| - 0.46 10.6 0.1 0.46 10.6 0.1 3.0 3 0 0 3 3 3 0 YesK-like protein DUF4229 PF14012.1 gi|410670745|ref|YP_006923116.1| - 2.2 8.2 13.7 0.42 10.5 0.4 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF4229) DUF1295 PF06966.7 gi|410670745|ref|YP_006923116.1| - 5.5 6.2 7.8 7.5 5.7 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1295) ABC_tran PF00005.22 gi|410670746|ref|YP_006923117.1| - 2.9e-31 108.5 0.0 2.1e-30 105.8 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|410670746|ref|YP_006923117.1| - 3.1e-15 56.9 0.1 2.6e-09 37.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|410670746|ref|YP_006923117.1| - 7.1e-10 38.7 0.0 1.7e-09 37.5 0.0 1.7 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|410670746|ref|YP_006923117.1| - 1.1e-05 24.8 0.0 0.00011 21.5 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.12 gi|410670746|ref|YP_006923117.1| - 1.8e-05 24.7 0.0 0.0011 18.9 0.0 2.4 2 0 0 2 2 2 1 TOBE domain AAA_22 PF13401.1 gi|410670746|ref|YP_006923117.1| - 0.00022 21.3 0.0 0.051 13.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|410670746|ref|YP_006923117.1| - 0.00023 20.3 0.1 0.79 8.7 0.0 3.0 3 0 0 3 3 3 2 AAA ATPase domain AAA_23 PF13476.1 gi|410670746|ref|YP_006923117.1| - 0.00061 20.1 0.0 0.001 19.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|410670746|ref|YP_006923117.1| - 0.00066 19.1 0.0 0.0014 18.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|410670746|ref|YP_006923117.1| - 0.0029 17.3 0.0 0.0074 16.0 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|410670746|ref|YP_006923117.1| - 0.0032 17.4 0.0 0.0078 16.2 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|410670746|ref|YP_006923117.1| - 0.0048 16.4 0.0 0.0093 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|410670746|ref|YP_006923117.1| - 0.0071 16.2 0.2 0.048 13.5 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|410670746|ref|YP_006923117.1| - 0.013 15.0 0.2 0.074 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|410670746|ref|YP_006923117.1| - 0.019 14.4 0.0 0.93 8.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|410670746|ref|YP_006923117.1| - 0.019 14.6 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase AAA_33 PF13671.1 gi|410670746|ref|YP_006923117.1| - 0.06 13.2 0.0 0.12 12.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|410670746|ref|YP_006923117.1| - 0.084 11.7 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.1 gi|410670746|ref|YP_006923117.1| - 0.085 13.1 0.3 0.24 11.7 0.0 2.0 3 0 0 3 3 2 0 AAA domain PEPCK_ATP PF01293.15 gi|410670746|ref|YP_006923117.1| - 0.1 11.1 0.1 0.19 10.2 0.0 1.4 2 0 0 2 2 2 0 Phosphoenolpyruvate carboxykinase NACHT PF05729.7 gi|410670746|ref|YP_006923117.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_17 PF13207.1 gi|410670746|ref|YP_006923117.1| - 0.18 12.6 1.1 0.8 10.5 0.3 2.4 2 1 0 2 2 2 0 AAA domain Tropomyosin_1 PF12718.2 gi|410670747|ref|YP_006923118.1| - 0.0014 18.5 4.7 0.021 14.6 0.1 4.2 3 1 1 4 4 4 2 Tropomyosin like Baculo_PEP_C PF04513.7 gi|410670747|ref|YP_006923118.1| - 0.0082 15.9 1.3 0.5 10.1 0.1 3.6 2 1 2 4 4 4 1 Baculovirus polyhedron envelope protein, PEP, C terminus PRD PF00874.15 gi|410670747|ref|YP_006923118.1| - 0.0091 16.0 0.1 4.3 7.5 0.1 2.9 2 0 0 2 2 2 1 PRD domain Gal4_dimer PF03902.8 gi|410670747|ref|YP_006923118.1| - 0.01 15.7 0.6 2.7 7.9 0.0 3.1 2 0 0 2 2 2 0 Gal4-like dimerisation domain Cortex-I_coil PF09304.5 gi|410670747|ref|YP_006923118.1| - 0.062 13.3 0.7 0.062 13.3 0.5 4.4 4 1 1 5 5 5 0 Cortexillin I, coiled coil Mnd1 PF03962.10 gi|410670747|ref|YP_006923118.1| - 0.18 11.4 14.9 0.14 11.8 0.4 3.6 3 1 1 4 4 4 0 Mnd1 family FlaC_arch PF05377.6 gi|410670747|ref|YP_006923118.1| - 0.24 11.3 0.2 0.24 11.3 0.1 4.9 4 1 0 4 4 4 0 Flagella accessory protein C (FlaC) IncA PF04156.9 gi|410670747|ref|YP_006923118.1| - 2.4 7.6 24.2 0.25 10.9 4.8 3.5 3 1 0 3 3 3 0 IncA protein Spore_III_AB PF09548.5 gi|410670747|ref|YP_006923118.1| - 3.1 7.5 12.7 2.3 7.9 0.1 3.5 3 1 1 4 4 4 0 Stage III sporulation protein AB (spore_III_AB) PPDK_N PF01326.14 gi|410670748|ref|YP_006923119.1| - 2.7e-92 309.3 0.0 4.8e-92 308.5 0.0 1.4 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|410670748|ref|YP_006923119.1| - 7.3e-58 195.7 0.0 1.2e-57 195.0 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|410670748|ref|YP_006923119.1| - 5.1e-25 86.8 0.6 1.6e-24 85.2 0.4 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain DnaJ PF00226.26 gi|410670748|ref|YP_006923119.1| - 0.075 12.7 0.0 0.55 10.0 0.0 2.2 2 0 0 2 2 2 0 DnaJ domain Cellulose_synt PF03552.9 gi|410670748|ref|YP_006923119.1| - 0.14 10.4 0.0 0.33 9.1 0.0 1.5 2 0 0 2 2 2 0 Cellulose synthase DUF1368 PF07112.6 gi|410670749|ref|YP_006923120.1| - 0.089 11.3 0.0 0.094 11.2 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1368) Sod_Fe_C PF02777.13 gi|410670750|ref|YP_006923121.1| - 2.5e-38 130.1 0.5 5.5e-38 129.0 0.2 1.6 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|410670750|ref|YP_006923121.1| - 1.2e-26 92.7 2.5 2.2e-26 91.9 1.7 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain EFhand_Ca_insen PF08726.5 gi|410670750|ref|YP_006923121.1| - 0.089 12.7 0.3 0.18 11.8 0.2 1.4 1 0 0 1 1 1 0 Ca2+ insensitive EF hand HATPase_c PF02518.21 gi|410670751|ref|YP_006923122.1| - 4.1e-31 106.9 0.0 9.6e-31 105.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|410670751|ref|YP_006923122.1| - 1.3e-21 76.3 0.4 1.1e-20 73.4 0.1 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|410670751|ref|YP_006923122.1| - 1e-16 60.7 0.1 2.2e-16 59.7 0.1 1.6 1 0 0 1 1 1 1 PAS fold Cache_1 PF02743.13 gi|410670751|ref|YP_006923122.1| - 9.7e-13 47.4 0.1 2.8e-12 45.9 0.1 1.8 1 0 0 1 1 1 1 Cache domain HAMP PF00672.20 gi|410670751|ref|YP_006923122.1| - 5.4e-05 23.2 0.1 5.4e-05 23.2 0.0 1.9 2 0 0 2 2 1 1 HAMP domain PAS_9 PF13426.1 gi|410670751|ref|YP_006923122.1| - 0.00096 19.5 0.0 0.0024 18.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_11 PF14598.1 gi|410670751|ref|YP_006923122.1| - 0.012 15.5 0.0 0.034 14.1 0.0 1.8 1 0 0 1 1 1 0 PAS domain PAS_4 PF08448.5 gi|410670751|ref|YP_006923122.1| - 0.014 15.4 0.0 0.031 14.3 0.0 1.6 1 0 0 1 1 1 0 PAS fold TarH PF02203.10 gi|410670751|ref|YP_006923122.1| - 0.014 15.1 4.1 0.031 14.1 2.2 2.0 2 0 0 2 2 2 0 Tar ligand binding domain homologue PAS PF00989.19 gi|410670751|ref|YP_006923122.1| - 0.021 14.6 0.0 0.045 13.5 0.0 1.7 1 0 0 1 1 1 0 PAS fold HATPase_c_2 PF13581.1 gi|410670751|ref|YP_006923122.1| - 0.1 12.3 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain NYD-SP28 PF14772.1 gi|410670751|ref|YP_006923122.1| - 0.66 10.0 3.5 0.51 10.4 0.0 2.4 3 0 0 3 3 3 0 Sperm tail Aminotran_4 PF01063.14 gi|410670752|ref|YP_006923123.1| - 1.2e-48 165.5 0.0 1.4e-48 165.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV SVM_signal PF12113.3 gi|410670753|ref|YP_006923124.1| - 0.015 15.0 1.1 0.023 14.5 0.8 1.3 1 0 0 1 1 1 0 SVM protein signal sequence DUF4271 PF14093.1 gi|410670754|ref|YP_006923125.1| - 0.043 13.4 0.5 0.048 13.3 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4271) MoeA_N PF03453.12 gi|410670755|ref|YP_006923126.1| - 1.9e-49 167.1 0.2 3.3e-49 166.3 0.2 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) PBP_like PF12727.2 gi|410670755|ref|YP_006923126.1| - 1.2e-47 161.4 0.0 1.8e-47 160.8 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain MoCF_biosynth PF00994.19 gi|410670755|ref|YP_006923126.1| - 8e-28 96.6 0.1 1.7e-27 95.6 0.1 1.6 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|410670755|ref|YP_006923126.1| - 3.4e-11 42.9 0.0 1.4e-10 40.9 0.0 2.1 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) LysR_substrate PF03466.15 gi|410670755|ref|YP_006923126.1| - 0.14 11.2 0.0 2.7 7.0 0.0 2.1 2 0 0 2 2 2 0 LysR substrate binding domain MMR_HSR1 PF01926.18 gi|410670756|ref|YP_006923127.1| - 3e-20 72.2 0.0 7.4e-20 71.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|410670756|ref|YP_006923127.1| - 7.7e-17 60.8 0.0 1.4e-16 60.0 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|410670756|ref|YP_006923127.1| - 2.5e-14 52.8 1.3 5.3e-14 51.7 0.0 2.0 2 0 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|410670756|ref|YP_006923127.1| - 2.6e-06 27.3 0.4 0.092 12.5 0.0 2.6 2 1 1 3 3 3 2 Dynamin family Miro PF08477.8 gi|410670756|ref|YP_006923127.1| - 0.0011 19.5 0.1 0.0034 17.8 0.0 2.0 2 0 0 2 2 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|410670756|ref|YP_006923127.1| - 0.0016 18.0 0.4 0.077 12.5 0.1 2.4 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.22 gi|410670756|ref|YP_006923127.1| - 0.0018 17.7 4.9 0.7 9.2 0.1 3.3 1 1 2 3 3 3 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|410670756|ref|YP_006923127.1| - 0.0043 16.3 0.8 0.033 13.4 0.1 2.4 1 1 2 3 3 3 1 ADP-ribosylation factor family DUF258 PF03193.11 gi|410670756|ref|YP_006923127.1| - 0.011 14.9 0.1 0.02 14.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 cobW PF02492.14 gi|410670756|ref|YP_006923127.1| - 0.044 13.2 1.6 1.5 8.2 0.1 2.5 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain SRPRB PF09439.5 gi|410670756|ref|YP_006923127.1| - 0.052 12.7 0.0 0.097 11.8 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_18 PF13238.1 gi|410670756|ref|YP_006923127.1| - 0.077 13.3 1.1 0.49 10.6 0.8 2.3 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|410670756|ref|YP_006923127.1| - 0.085 11.6 0.2 0.085 11.6 0.1 2.1 1 1 2 3 3 3 0 ArgK protein PD40 PF07676.7 gi|410670758|ref|YP_006923129.1| - 0.00041 19.9 1.1 2.2 8.0 0.1 3.8 3 1 0 3 3 3 2 WD40-like Beta Propeller Repeat FAINT PF04385.10 gi|410670758|ref|YP_006923129.1| - 0.27 11.1 0.1 0.27 11.1 0.0 4.1 5 0 0 5 5 5 0 Domain of unknown function, DUF529 DUF2115 PF09888.4 gi|410670759|ref|YP_006923130.1| - 9.9e-44 149.3 0.1 1.1e-43 149.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) 7tm_6 PF02949.15 gi|410670760|ref|YP_006923131.1| - 1.5 7.5 5.9 2.3 6.9 4.1 1.3 1 0 0 1 1 1 0 7tm Odorant receptor CMD PF02627.15 gi|410670761|ref|YP_006923132.1| - 1.6e-12 47.0 0.0 2.1e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family FliG_M PF14841.1 gi|410670761|ref|YP_006923132.1| - 0.016 15.2 0.1 0.052 13.5 0.1 1.8 1 1 0 1 1 1 0 FliG middle domain PPR PF01535.15 gi|410670761|ref|YP_006923132.1| - 0.063 13.2 0.0 10 6.3 0.0 2.8 2 0 0 2 2 2 0 PPR repeat DUF1294 PF06961.8 gi|410670762|ref|YP_006923133.1| - 2e-22 78.9 1.0 2.5e-22 78.5 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) DUF3169 PF11368.3 gi|410670762|ref|YP_006923133.1| - 0.039 13.1 0.3 0.042 13.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) DUF3139 PF11337.3 gi|410670763|ref|YP_006923134.1| - 0.62 10.3 3.7 1.1 9.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) SelR PF01641.13 gi|410670764|ref|YP_006923135.1| - 2.8e-51 172.4 0.2 3.1e-51 172.2 0.1 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.9 gi|410670764|ref|YP_006923135.1| - 0.023 14.7 0.2 0.064 13.3 0.1 1.8 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DZR PF12773.2 gi|410670764|ref|YP_006923135.1| - 0.023 14.5 0.9 0.17 11.7 0.6 2.2 1 1 0 1 1 1 0 Double zinc ribbon DUF2296 PF10058.4 gi|410670764|ref|YP_006923135.1| - 0.036 13.8 0.9 1.9 8.3 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) TF_Zn_Ribbon PF08271.7 gi|410670764|ref|YP_006923135.1| - 0.04 13.2 1.8 8.1 5.8 0.2 2.8 2 1 1 3 3 3 0 TFIIB zinc-binding GFA PF04828.9 gi|410670764|ref|YP_006923135.1| - 0.043 13.7 1.8 3.2 7.7 0.1 2.2 1 1 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme HNH_5 PF14279.1 gi|410670764|ref|YP_006923135.1| - 0.049 13.6 0.3 0.45 10.5 0.0 2.1 2 0 0 2 2 2 0 HNH endonuclease DUF2318 PF10080.4 gi|410670764|ref|YP_006923135.1| - 0.11 12.2 0.6 15 5.4 0.0 2.2 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) Zn_Tnp_IS1595 PF12760.2 gi|410670764|ref|YP_006923135.1| - 0.24 11.2 1.8 5.5 6.8 0.3 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|410670764|ref|YP_006923135.1| - 0.71 9.1 3.0 1.2 8.3 0.6 2.3 2 1 0 2 2 2 0 zinc-ribbon domain iPGM_N PF06415.8 gi|410670766|ref|YP_006923137.1| - 5e-85 284.3 0.0 7.1e-85 283.8 0.0 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.13 gi|410670766|ref|YP_006923137.1| - 1.1e-84 283.7 0.0 1.3e-84 283.5 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|410670766|ref|YP_006923137.1| - 4.6e-05 22.9 0.0 6.6e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|410670766|ref|YP_006923137.1| - 0.024 14.3 0.1 0.042 13.5 0.0 1.3 1 0 0 1 1 1 0 PglZ domain XPG_I PF00867.13 gi|410670767|ref|YP_006923138.1| - 1.7e-26 92.1 0.1 1.7e-25 88.9 0.0 2.2 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.12 gi|410670767|ref|YP_006923138.1| - 1.2e-21 76.8 0.0 1.9e-21 76.1 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|410670767|ref|YP_006923138.1| - 4.8e-07 29.9 0.1 1.2e-06 28.7 0.0 1.6 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.2 gi|410670767|ref|YP_006923138.1| - 0.0067 16.2 0.0 0.018 14.9 0.0 1.7 1 1 0 1 1 1 1 Helix-hairpin-helix motif PrgI PF12666.2 gi|410670769|ref|YP_006923140.1| - 0.0052 16.9 0.4 0.0062 16.6 0.3 1.1 1 0 0 1 1 1 1 PrgI family protein Oxidored_q2 PF00420.19 gi|410670769|ref|YP_006923140.1| - 0.024 14.2 0.7 0.03 13.9 0.5 1.1 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4175 PF13779.1 gi|410670769|ref|YP_006923140.1| - 0.024 12.3 0.2 0.027 12.1 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) Herpes_U26 PF07402.6 gi|410670769|ref|YP_006923140.1| - 0.037 13.3 0.5 0.046 13.0 0.3 1.1 1 0 0 1 1 1 0 Human herpesvirus U26 protein DUF1119 PF06550.6 gi|410670770|ref|YP_006923141.1| - 1.3e-105 352.5 30.9 1.5e-105 352.3 21.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1119) DUF4583 PF15190.1 gi|410670770|ref|YP_006923141.1| - 0.53 9.9 5.5 0.17 11.5 1.5 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4583) CMD PF02627.15 gi|410670771|ref|YP_006923142.1| - 1.8e-13 50.0 0.1 2.8e-13 49.4 0.0 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family MCR_C PF04609.7 gi|410670772|ref|YP_006923143.1| - 1.2e-107 358.7 0.1 1.3e-107 358.5 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF2113 PF09886.4 gi|410670773|ref|YP_006923144.1| - 4.5e-60 202.0 0.2 5e-60 201.8 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) PH PF00169.24 gi|410670773|ref|YP_006923144.1| - 0.078 13.1 0.0 0.099 12.8 0.0 1.2 1 0 0 1 1 1 0 PH domain BcrAD_BadFG PF01869.15 gi|410670774|ref|YP_006923145.1| - 5.1e-58 196.5 3.5 7.2e-58 196.0 2.4 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Peptidase_M22 PF00814.20 gi|410670774|ref|YP_006923145.1| - 0.00083 18.9 0.1 0.02 14.4 0.1 2.3 1 1 0 1 1 1 1 Glycoprotease family Hydant_A_N PF05378.8 gi|410670774|ref|YP_006923145.1| - 0.0074 15.8 1.2 0.0074 15.8 0.8 2.2 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region FGGY_N PF00370.16 gi|410670774|ref|YP_006923145.1| - 0.016 14.5 0.3 0.87 8.8 0.2 2.4 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain FtsA PF14450.1 gi|410670774|ref|YP_006923145.1| - 0.026 14.3 4.4 0.44 10.3 3.1 2.8 1 1 0 1 1 1 0 Cell division protein FtsA DUF2112 PF09885.4 gi|410670775|ref|YP_006923146.1| - 4.9e-65 217.5 0.2 5.6e-65 217.3 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.4 gi|410670776|ref|YP_006923147.1| - 9e-41 137.6 0.0 1.1e-40 137.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) PASTA PF03793.14 gi|410670777|ref|YP_006923148.1| - 0.021 14.4 0.0 0.068 12.8 0.0 1.9 1 0 0 1 1 1 0 PASTA domain Pro_isomerase PF00160.16 gi|410670777|ref|YP_006923148.1| - 0.034 14.3 0.1 9.7 6.3 0.0 3.5 3 1 0 3 3 3 0 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABC_tran PF00005.22 gi|410670778|ref|YP_006923149.1| - 5.2e-49 166.0 0.0 3.3e-24 85.7 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|410670778|ref|YP_006923149.1| - 1.3e-07 31.9 0.0 0.032 14.1 0.1 3.9 4 0 0 4 4 4 1 AAA domain SMC_N PF02463.14 gi|410670778|ref|YP_006923149.1| - 1.6e-06 27.5 0.8 0.064 12.4 0.0 3.1 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|410670778|ref|YP_006923149.1| - 3.2e-05 23.1 0.5 0.11 11.4 0.0 3.2 3 0 0 3 3 3 2 AAA ATPase domain PRK PF00485.13 gi|410670778|ref|YP_006923149.1| - 0.00025 20.6 0.0 0.59 9.6 0.0 2.5 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family DUF258 PF03193.11 gi|410670778|ref|YP_006923149.1| - 0.00026 20.1 0.8 0.3 10.2 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|410670778|ref|YP_006923149.1| - 0.00043 19.7 1.3 0.42 10.1 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|410670778|ref|YP_006923149.1| - 0.0006 19.6 0.0 3.2 7.7 0.0 3.3 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit UPF0079 PF02367.12 gi|410670778|ref|YP_006923149.1| - 0.001 18.7 0.9 0.68 9.5 0.0 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 AAA_17 PF13207.1 gi|410670778|ref|YP_006923149.1| - 0.0012 19.6 0.7 0.16 12.8 0.1 2.8 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|410670778|ref|YP_006923149.1| - 0.0037 17.5 2.5 0.15 12.3 0.4 3.1 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|410670778|ref|YP_006923149.1| - 0.0049 16.9 0.7 0.87 9.7 0.0 3.1 3 1 0 3 3 3 1 AAA domain AAA_30 PF13604.1 gi|410670778|ref|YP_006923149.1| - 0.0074 15.8 0.2 1.9 8.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|410670778|ref|YP_006923149.1| - 0.013 15.2 1.0 1.4 8.5 0.2 2.8 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|410670778|ref|YP_006923149.1| - 0.014 15.3 1.4 1.5 8.8 0.0 3.0 2 1 0 2 2 2 0 AAA ATPase domain NB-ARC PF00931.17 gi|410670778|ref|YP_006923149.1| - 0.014 14.2 1.7 0.41 9.4 0.1 2.5 2 0 0 2 2 2 0 NB-ARC domain AAA_10 PF12846.2 gi|410670778|ref|YP_006923149.1| - 0.016 14.6 1.1 3 7.2 0.0 3.3 3 0 0 3 3 3 0 AAA-like domain SDH_sah PF01972.11 gi|410670778|ref|YP_006923149.1| - 0.021 13.6 3.5 0.031 13.0 0.3 2.3 2 1 0 2 2 2 0 Serine dehydrogenase proteinase AAA_25 PF13481.1 gi|410670778|ref|YP_006923149.1| - 0.024 14.0 0.2 4.5 6.6 0.0 2.7 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|410670778|ref|YP_006923149.1| - 0.025 14.0 0.2 0.74 9.2 0.0 2.3 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_19 PF13245.1 gi|410670778|ref|YP_006923149.1| - 0.038 13.7 0.5 4.8 7.0 0.0 2.8 2 0 0 2 2 2 0 Part of AAA domain AAA_13 PF13166.1 gi|410670778|ref|YP_006923149.1| - 0.045 12.2 0.0 24 3.1 0.0 3.0 3 0 0 3 3 3 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|410670778|ref|YP_006923149.1| - 0.068 12.6 0.9 3.8 6.9 0.1 2.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF87 PF01935.12 gi|410670778|ref|YP_006923149.1| - 0.082 12.7 3.3 1.1 9.0 0.1 2.8 2 0 0 2 2 2 0 Domain of unknown function DUF87 OrfB_Zn_ribbon PF07282.6 gi|410670778|ref|YP_006923149.1| - 0.18 11.5 0.8 0.36 10.5 0.5 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain AAA_23 PF13476.1 gi|410670778|ref|YP_006923149.1| - 0.21 11.8 1.7 14 5.9 0.1 2.5 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|410670778|ref|YP_006923149.1| - 0.25 11.0 3.5 0.36 10.4 0.0 2.5 3 0 0 3 3 3 0 Archaeal ATPase AAA PF00004.24 gi|410670778|ref|YP_006923149.1| - 0.41 10.8 2.9 23 5.2 0.1 3.1 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|410670778|ref|YP_006923149.1| - 0.63 9.1 5.6 5.8 5.9 0.1 3.1 3 1 0 3 3 3 0 KaiC Hydrolase PF00702.21 gi|410670779|ref|YP_006923150.1| - 5.7e-14 53.0 0.3 2.9e-13 50.7 0.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|410670779|ref|YP_006923150.1| - 9.2e-08 32.4 0.0 1.2e-07 32.0 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|410670779|ref|YP_006923150.1| - 0.00029 20.5 0.0 0.1 12.1 0.1 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Peptidase_M10 PF00413.19 gi|410670780|ref|YP_006923151.1| - 1.2e-13 51.0 0.0 6e-13 48.8 0.0 1.8 1 1 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.1 gi|410670780|ref|YP_006923151.1| - 4.1e-05 24.0 0.0 5.3e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.4 gi|410670780|ref|YP_006923151.1| - 0.00017 20.5 0.0 0.00024 20.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase M66 Peptidase_M57 PF12388.3 gi|410670780|ref|YP_006923151.1| - 0.00039 19.8 0.0 0.00049 19.4 0.0 1.1 1 0 0 1 1 1 1 Dual-action HEIGH metallo-peptidase Reprolysin_2 PF13574.1 gi|410670780|ref|YP_006923151.1| - 0.00049 20.2 0.0 0.00064 19.8 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.3 gi|410670780|ref|YP_006923151.1| - 0.0031 16.0 0.0 0.0044 15.5 0.0 1.1 1 0 0 1 1 1 1 Putative peptidase family Astacin PF01400.19 gi|410670780|ref|YP_006923151.1| - 0.0039 16.5 0.0 0.0066 15.8 0.0 1.3 1 0 0 1 1 1 1 Astacin (Peptidase family M12A) Peptidase_M54 PF07998.6 gi|410670780|ref|YP_006923151.1| - 0.018 14.8 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M54 Reprolysin_4 PF13583.1 gi|410670780|ref|YP_006923151.1| - 0.035 13.6 0.0 0.041 13.4 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|410670780|ref|YP_006923151.1| - 0.055 13.3 0.0 0.067 13.1 0.0 1.1 1 0 0 1 1 1 0 Metallo-peptidase family M12 DUF3152 PF11350.3 gi|410670780|ref|YP_006923151.1| - 0.12 11.9 0.4 0.48 9.9 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3152) TGFb_propeptide PF00688.13 gi|410670780|ref|YP_006923151.1| - 0.15 11.3 0.0 0.23 10.7 0.0 1.2 1 0 0 1 1 1 0 TGF-beta propeptide DNA_binding_1 PF01035.15 gi|410670781|ref|YP_006923152.1| - 8.3e-28 95.9 0.0 1e-27 95.6 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain AFOR_C PF01314.13 gi|410670782|ref|YP_006923153.1| - 3.8e-106 354.9 0.0 4.6e-106 354.7 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|410670782|ref|YP_006923153.1| - 3.8e-71 238.6 0.4 5.3e-71 238.1 0.3 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain eIF-5a PF01287.15 gi|410670783|ref|YP_006923154.1| - 5.8e-13 48.5 0.4 5.8e-13 48.5 0.3 1.7 2 0 0 2 2 2 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|410670783|ref|YP_006923154.1| - 0.00028 20.7 0.0 0.00047 19.9 0.0 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|410670783|ref|YP_006923154.1| - 0.0024 17.4 0.3 0.0087 15.7 0.2 2.0 1 0 0 1 1 1 1 KOW motif Arginase PF00491.16 gi|410670784|ref|YP_006923155.1| - 1.2e-80 270.7 0.0 1.4e-80 270.5 0.0 1.0 1 0 0 1 1 1 1 Arginase family PCMT PF01135.14 gi|410670788|ref|YP_006923159.1| - 1.5e-21 76.9 0.0 1.6e-21 76.8 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Hydantoinase_B PF02538.9 gi|410670789|ref|YP_006923160.1| - 3.4e-203 675.6 0.1 4.9e-203 675.1 0.0 1.1 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|410670789|ref|YP_006923160.1| - 3.5e-117 390.6 0.2 1.4e-116 388.6 0.0 2.1 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|410670789|ref|YP_006923160.1| - 2.3e-60 203.1 0.2 1.4e-58 197.3 0.0 2.8 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region DNase-RNase PF02577.9 gi|410670790|ref|YP_006923161.1| - 2.9e-37 126.9 0.2 3.5e-37 126.6 0.2 1.0 1 0 0 1 1 1 1 Bifunctional nuclease DUF1614 PF07758.6 gi|410670791|ref|YP_006923162.1| - 8.1e-54 182.0 11.8 8.1e-54 182.0 8.2 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) DDE_Tnp_IS1 PF03400.8 gi|410670793|ref|YP_006923164.1| - 2.9e-08 33.8 0.1 3.2e-08 33.7 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase DDE_Tnp_1 PF01609.16 gi|410670794|ref|YP_006923165.1| - 2.1e-08 33.9 0.7 3.2e-08 33.3 0.5 1.3 1 0 0 1 1 1 1 Transposase DDE domain ABC_tran_2 PF12848.2 gi|410670794|ref|YP_006923165.1| - 0.035 13.9 2.4 0.095 12.5 1.6 1.7 1 0 0 1 1 1 0 ABC transporter DDE_5 PF13546.1 gi|410670794|ref|YP_006923165.1| - 0.067 12.0 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease DDE_Tnp_IS1 PF03400.8 gi|410670795|ref|YP_006923166.1| - 0.025 14.7 0.1 0.025 14.7 0.1 1.1 1 0 0 1 1 1 0 IS1 transposase His_biosynth PF00977.16 gi|410670799|ref|YP_006923170.1| - 2e-87 292.2 0.3 2.3e-87 292.0 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|410670799|ref|YP_006923170.1| - 1.5e-06 27.4 0.1 0.0024 16.9 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|410670799|ref|YP_006923170.1| - 9e-06 24.8 0.1 0.0031 16.5 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.12 gi|410670799|ref|YP_006923170.1| - 1.1e-05 24.4 0.0 0.00013 20.9 0.0 2.0 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) TMP-TENI PF02581.12 gi|410670799|ref|YP_006923170.1| - 4.3e-05 22.7 0.1 0.026 13.6 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI PcrB PF01884.12 gi|410670799|ref|YP_006923170.1| - 5.6e-05 22.4 0.6 0.0003 20.1 0.2 2.3 2 1 1 3 3 3 1 PcrB family NMO PF03060.10 gi|410670799|ref|YP_006923170.1| - 0.00011 21.4 0.0 0.03 13.4 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase IMPDH PF00478.20 gi|410670799|ref|YP_006923170.1| - 0.00027 19.9 0.2 0.17 10.7 0.0 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.7 gi|410670799|ref|YP_006923170.1| - 0.0019 17.2 0.2 0.031 13.3 0.1 2.1 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator SBP_bac_3 PF00497.15 gi|410670799|ref|YP_006923170.1| - 0.023 13.9 0.0 0.045 12.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 MazG PF03819.12 gi|410670800|ref|YP_006923171.1| - 4.1e-19 68.2 0.0 5e-19 68.0 0.0 1.1 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|410670800|ref|YP_006923171.1| - 6.8e-06 26.2 0.3 8.9e-06 25.9 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase GvpG PF05120.7 gi|410670800|ref|YP_006923171.1| - 0.0094 15.7 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 1 Gas vesicle protein G Methyltransf_31 PF13847.1 gi|410670801|ref|YP_006923172.1| - 1e-20 73.8 0.0 1.9e-20 72.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410670801|ref|YP_006923172.1| - 1.8e-18 67.1 0.0 3.2e-18 66.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|410670801|ref|YP_006923172.1| - 1.5e-15 56.9 0.0 1.9e-15 56.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|410670801|ref|YP_006923172.1| - 2.7e-15 56.6 0.0 5.3e-15 55.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|410670801|ref|YP_006923172.1| - 3.9e-15 55.9 0.0 5.9e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|410670801|ref|YP_006923172.1| - 4.9e-15 55.7 0.0 1.7e-14 54.0 0.0 1.9 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|410670801|ref|YP_006923172.1| - 7.3e-13 48.7 0.0 2e-12 47.3 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|410670801|ref|YP_006923172.1| - 2e-09 37.5 0.0 2.5e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|410670801|ref|YP_006923172.1| - 1.5e-08 34.0 0.0 2.8e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.14 gi|410670801|ref|YP_006923172.1| - 4.2e-08 32.9 0.0 5.9e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|410670801|ref|YP_006923172.1| - 9.3e-08 31.6 0.0 1.4e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.6 gi|410670801|ref|YP_006923172.1| - 9.3e-08 31.6 0.0 1.3e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.15 gi|410670801|ref|YP_006923172.1| - 4.8e-07 29.1 0.0 8.2e-07 28.3 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_PK PF05891.7 gi|410670801|ref|YP_006923172.1| - 8.2e-07 28.5 0.0 1.6e-06 27.5 0.0 1.3 1 1 0 1 1 1 1 AdoMet dependent proline di-methyltransferase tRNA_U5-meth_tr PF05958.6 gi|410670801|ref|YP_006923172.1| - 6e-06 25.1 0.0 8.7e-06 24.6 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Met_10 PF02475.11 gi|410670801|ref|YP_006923172.1| - 1.8e-05 24.4 0.0 7.9e-05 22.3 0.0 1.8 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_4 PF02390.12 gi|410670801|ref|YP_006923172.1| - 2.8e-05 23.2 0.0 4.4e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase UPF0020 PF01170.13 gi|410670801|ref|YP_006923172.1| - 0.0001 21.9 0.0 0.00024 20.7 0.0 1.6 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|410670801|ref|YP_006923172.1| - 0.0014 17.8 0.0 0.0022 17.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.14 gi|410670801|ref|YP_006923172.1| - 0.0021 18.0 0.0 0.0042 17.1 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase TPMT PF05724.6 gi|410670801|ref|YP_006923172.1| - 0.0032 16.9 0.0 0.0047 16.3 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) DREV PF05219.7 gi|410670801|ref|YP_006923172.1| - 0.004 16.0 0.1 0.017 14.0 0.0 2.0 2 0 0 2 2 2 1 DREV methyltransferase Methyltransf_32 PF13679.1 gi|410670801|ref|YP_006923172.1| - 0.017 14.7 0.0 0.028 14.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|410670801|ref|YP_006923172.1| - 0.02 14.2 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_15 PF09445.5 gi|410670801|ref|YP_006923172.1| - 0.025 14.1 0.0 0.039 13.4 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TehB PF03848.9 gi|410670801|ref|YP_006923172.1| - 0.032 13.3 0.1 0.1 11.7 0.0 1.7 1 1 1 2 2 2 0 Tellurite resistance protein TehB Methyltransf_3 PF01596.12 gi|410670801|ref|YP_006923172.1| - 0.06 12.3 0.0 0.13 11.3 0.0 1.5 2 0 0 2 2 2 0 O-methyltransferase DUF633 PF04816.7 gi|410670801|ref|YP_006923172.1| - 0.09 12.1 0.0 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF633) MetW PF07021.7 gi|410670801|ref|YP_006923172.1| - 0.091 12.1 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW UPF0146 PF03686.8 gi|410670801|ref|YP_006923172.1| - 0.098 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) PG_binding_1 PF01471.13 gi|410670803|ref|YP_006923174.1| - 8.7e-11 41.6 0.4 1.2e-10 41.1 0.3 1.2 1 0 0 1 1 1 1 Putative peptidoglycan binding domain PLDc_2 PF13091.1 gi|410670804|ref|YP_006923175.1| - 2.1e-12 46.9 0.0 8.1e-11 41.7 0.0 2.3 2 0 0 2 2 2 1 PLD-like domain PLDc PF00614.17 gi|410670804|ref|YP_006923175.1| - 5.7e-08 32.3 0.1 1.4e-05 24.7 0.1 2.8 2 0 0 2 2 2 2 Phospholipase D Active site motif AhpC-TSA PF00578.16 gi|410670805|ref|YP_006923176.1| - 1.1e-30 105.8 0.0 1.3e-30 105.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|410670805|ref|YP_006923176.1| - 2.3e-16 59.6 0.0 2.7e-16 59.4 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.9 gi|410670805|ref|YP_006923176.1| - 0.06 12.9 0.0 0.087 12.4 0.0 1.2 1 0 0 1 1 1 0 SCO1/SenC Glycos_transf_1 PF00534.15 gi|410670805|ref|YP_006923176.1| - 0.069 12.5 0.0 0.088 12.2 0.0 1.1 1 0 0 1 1 1 0 Glycosyl transferases group 1 Thioredoxin_8 PF13905.1 gi|410670805|ref|YP_006923176.1| - 0.11 12.6 0.0 0.31 11.1 0.0 1.8 1 1 0 1 1 1 0 Thioredoxin-like CARDB PF07705.6 gi|410670806|ref|YP_006923177.1| - 2e-05 24.5 2.5 0.00086 19.3 0.1 2.4 2 0 0 2 2 2 2 CARDB Peptidase_U32 PF01136.14 gi|410670808|ref|YP_006923179.1| - 4.4e-121 402.1 0.0 6.3e-87 290.3 0.0 2.2 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|410670808|ref|YP_006923179.1| - 6.1e-32 110.2 0.1 1.1e-31 109.4 0.0 1.4 1 0 0 1 1 1 1 Collagenase QRPTase_C PF01729.14 gi|410670808|ref|YP_006923179.1| - 0.05 13.1 0.0 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Nuc_deoxyrib_tr PF05014.10 gi|410670809|ref|YP_006923180.1| - 2.7e-07 30.4 0.0 3e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase BofA PF07441.6 gi|410670810|ref|YP_006923181.1| - 3.5e-06 26.8 22.9 4.3e-06 26.6 15.9 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Apq12 PF12716.2 gi|410670810|ref|YP_006923181.1| - 0.00094 18.8 11.1 0.00094 18.8 7.7 2.3 1 1 0 2 2 2 1 Nuclear pore assembly and biogenesis Glucan_synthase PF02364.10 gi|410670810|ref|YP_006923181.1| - 2.3 6.0 7.4 2.6 5.8 5.1 1.0 1 0 0 1 1 1 0 1,3-beta-glucan synthase component Methyltransf_11 PF08241.7 gi|410670811|ref|YP_006923182.1| - 2.9e-21 75.7 0.0 4.2e-21 75.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|410670811|ref|YP_006923182.1| - 3.4e-17 62.6 0.0 6e-17 61.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|410670811|ref|YP_006923182.1| - 1e-15 57.8 0.0 1.4e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|410670811|ref|YP_006923182.1| - 1.5e-15 57.1 0.0 1.9e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|410670811|ref|YP_006923182.1| - 1.7e-12 47.6 0.0 2.5e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410670811|ref|YP_006923182.1| - 6.6e-12 46.0 0.0 9.6e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|410670811|ref|YP_006923182.1| - 6.9e-08 32.5 0.0 1.3e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|410670811|ref|YP_006923182.1| - 3.1e-07 29.7 0.0 4.1e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.13 gi|410670811|ref|YP_006923182.1| - 5.3e-07 28.9 0.0 6.9e-07 28.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.7 gi|410670811|ref|YP_006923182.1| - 8.6e-07 28.5 0.0 1.8e-06 27.4 0.0 1.5 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.9 gi|410670811|ref|YP_006923182.1| - 3.6e-05 23.0 0.0 4.2e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB CheR PF01739.13 gi|410670811|ref|YP_006923182.1| - 0.00012 21.4 0.1 0.016 14.5 0.0 2.6 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain MTS PF05175.9 gi|410670811|ref|YP_006923182.1| - 0.00028 20.3 0.0 0.0004 19.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|410670811|ref|YP_006923182.1| - 0.00056 18.7 0.0 0.00074 18.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.10 gi|410670811|ref|YP_006923182.1| - 0.013 15.1 0.0 0.059 12.9 0.0 1.9 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_29 PF03141.11 gi|410670811|ref|YP_006923182.1| - 0.053 11.8 0.0 0.067 11.5 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_PK PF05891.7 gi|410670811|ref|YP_006923182.1| - 0.058 12.6 0.0 2.5 7.3 0.0 2.0 2 0 0 2 2 2 0 AdoMet dependent proline di-methyltransferase tRNA-synt_1f PF01921.13 gi|410670812|ref|YP_006923183.1| - 9.8e-130 432.3 0.0 1.6e-129 431.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|410670812|ref|YP_006923183.1| - 6.7e-09 34.8 0.1 0.00012 20.8 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|410670812|ref|YP_006923183.1| - 3e-06 26.5 0.0 0.058 12.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Fe_dep_repress PF01325.14 gi|410670813|ref|YP_006923184.1| - 2.8e-18 65.6 0.0 4.6e-18 64.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|410670813|ref|YP_006923184.1| - 7.6e-14 51.1 0.2 1.3e-13 50.4 0.2 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.2 gi|410670813|ref|YP_006923184.1| - 6.7e-07 28.8 0.0 1.5e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|410670813|ref|YP_006923184.1| - 8.2e-06 25.4 0.0 1.7e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|410670813|ref|YP_006923184.1| - 3e-05 23.3 0.0 7.6e-05 22.0 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|410670813|ref|YP_006923184.1| - 4.2e-05 23.7 0.0 7.2e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|410670813|ref|YP_006923184.1| - 7e-05 22.4 0.0 0.00013 21.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|410670813|ref|YP_006923184.1| - 0.0002 21.4 0.0 0.00095 19.2 0.0 2.1 1 1 1 2 2 2 1 Transcriptional regulator HTH_IclR PF09339.5 gi|410670813|ref|YP_006923184.1| - 0.00027 20.4 0.0 0.00041 19.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|410670813|ref|YP_006923184.1| - 0.0011 18.7 0.0 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_23 PF13384.1 gi|410670813|ref|YP_006923184.1| - 0.0012 18.4 0.0 0.0029 17.1 0.0 1.6 2 0 0 2 2 1 1 Homeodomain-like domain GntR PF00392.16 gi|410670813|ref|YP_006923184.1| - 0.002 17.5 0.0 0.0038 16.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.7 gi|410670813|ref|YP_006923184.1| - 0.0075 15.8 0.0 0.013 15.0 0.0 1.5 1 1 0 1 1 1 1 HTH domain v110 PF01639.12 gi|410670813|ref|YP_006923184.1| - 0.008 15.7 0.1 0.012 15.1 0.1 1.4 1 0 0 1 1 1 1 Viral family 110 HTH_5 PF01022.15 gi|410670813|ref|YP_006923184.1| - 0.01 15.5 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_6 PF01418.12 gi|410670813|ref|YP_006923184.1| - 0.01 15.5 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_Crp_2 PF13545.1 gi|410670813|ref|YP_006923184.1| - 0.01 15.5 0.0 0.037 13.8 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_28 PF13518.1 gi|410670813|ref|YP_006923184.1| - 0.014 15.3 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|410670813|ref|YP_006923184.1| - 0.037 13.5 0.1 0.26 10.8 0.0 2.1 2 1 0 2 2 2 0 LexA DNA binding domain HTH_1 PF00126.22 gi|410670813|ref|YP_006923184.1| - 0.048 13.4 0.1 0.13 12.0 0.0 1.8 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family eIF-5_eIF-2B PF01873.12 gi|410670813|ref|YP_006923184.1| - 0.064 12.9 0.8 0.099 12.3 0.4 1.5 1 1 0 1 1 1 0 Domain found in IF2B/IF5 HTH_AsnC-type PF13404.1 gi|410670813|ref|YP_006923184.1| - 0.068 12.7 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_29 PF13551.1 gi|410670813|ref|YP_006923184.1| - 0.099 12.7 0.0 0.4 10.8 0.0 1.8 1 1 0 1 1 1 0 Winged helix-turn helix HTH_12 PF08461.5 gi|410670813|ref|YP_006923184.1| - 0.12 12.0 0.0 0.65 9.7 0.0 2.2 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain TPD PF14811.1 gi|410670815|ref|YP_006923186.1| - 5.2e-47 158.8 0.1 8.1e-47 158.2 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function TPD sequence-motif HhH-GPD PF00730.20 gi|410670816|ref|YP_006923187.1| - 7.9e-11 42.2 0.0 1e-10 41.8 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|410670816|ref|YP_006923187.1| - 0.0016 18.5 0.0 0.0057 16.8 0.0 1.9 1 1 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.18 gi|410670816|ref|YP_006923187.1| - 0.055 13.1 0.0 0.15 11.8 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif Pribosyltran_N PF13793.1 gi|410670818|ref|YP_006923189.1| - 3e-20 72.0 0.0 2.4e-19 69.1 0.0 2.0 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|410670818|ref|YP_006923189.1| - 4.3e-14 52.3 0.3 9e-14 51.2 0.2 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|410670818|ref|YP_006923189.1| - 3.9e-08 33.2 1.0 7.1e-08 32.4 0.7 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|410670818|ref|YP_006923189.1| - 7.7e-06 25.2 0.5 2.6e-05 23.5 0.1 1.9 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|410670818|ref|YP_006923189.1| - 0.023 13.9 0.1 0.04 13.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase DUF1995 PF09353.5 gi|410670818|ref|YP_006923189.1| - 0.1 12.2 0.0 0.19 11.3 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1995) MoaC PF01967.16 gi|410670819|ref|YP_006923190.1| - 3.2e-50 169.3 1.0 3.7e-50 169.1 0.7 1.0 1 0 0 1 1 1 1 MoaC family Carb_kinase PF01256.12 gi|410670821|ref|YP_006923192.1| - 5.4e-54 183.0 0.1 7.2e-54 182.6 0.1 1.1 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|410670821|ref|YP_006923192.1| - 5.6e-40 136.6 0.1 1.6e-39 135.2 0.0 1.8 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|410670821|ref|YP_006923192.1| - 3.2e-07 29.7 0.1 6.1e-07 28.8 0.1 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family DHH PF01368.15 gi|410670822|ref|YP_006923193.1| - 8.9e-17 61.0 1.7 1.1e-16 60.7 0.5 1.7 2 0 0 2 2 2 1 DHH family TrkA_N PF02254.13 gi|410670822|ref|YP_006923193.1| - 3.8e-16 59.1 2.5 6.5e-16 58.3 0.7 2.1 2 0 0 2 2 2 1 TrkA-N domain DHHA1 PF02272.14 gi|410670822|ref|YP_006923193.1| - 2.1e-11 43.3 0.8 7.7e-11 41.5 0.2 2.2 2 0 0 2 2 2 1 DHHA1 domain CxxCxxCC PF03692.10 gi|410670823|ref|YP_006923194.1| - 1e-09 38.7 1.8 1.1e-08 35.4 1.3 2.2 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF2292 PF10055.4 gi|410670823|ref|YP_006923194.1| - 0.11 11.7 0.2 0.34 10.2 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized small protein (DUF2292) Aconitase PF00330.15 gi|410670824|ref|YP_006923195.1| - 2e-80 270.5 1.0 8.4e-55 186.0 0.2 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) PPP5 PF08321.7 gi|410670824|ref|YP_006923195.1| - 0.12 12.4 0.2 0.41 10.6 0.1 1.9 1 1 1 2 2 2 0 PPP5 TPR repeat region PRA-PH PF01503.12 gi|410670825|ref|YP_006923196.1| - 2.2e-15 56.6 0.2 2.5e-15 56.5 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|410670825|ref|YP_006923196.1| - 1.3e-06 28.2 2.2 1.3e-06 28.2 1.6 1.4 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain HrcA_DNA-bdg PF03444.10 gi|410670826|ref|YP_006923197.1| - 4.4e-36 122.1 0.2 9.8e-36 121.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|410670826|ref|YP_006923197.1| - 6.8e-24 83.3 0.4 1.3e-10 40.9 0.0 2.4 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|410670826|ref|YP_006923197.1| - 5e-09 36.1 0.0 1.1e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|410670826|ref|YP_006923197.1| - 1.7e-06 27.5 0.1 3.2e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|410670826|ref|YP_006923197.1| - 0.0025 17.4 0.0 0.016 14.8 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.7 gi|410670826|ref|YP_006923197.1| - 0.02 14.3 0.0 0.11 11.9 0.0 2.2 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|410670826|ref|YP_006923197.1| - 0.035 13.4 0.8 0.19 11.1 0.1 2.5 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|410670826|ref|YP_006923197.1| - 0.036 13.6 0.0 0.06 12.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|410670826|ref|YP_006923197.1| - 0.076 12.6 0.0 0.22 11.2 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.2 gi|410670826|ref|YP_006923197.1| - 0.15 11.9 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain NOG1 PF06858.9 gi|410670827|ref|YP_006923198.1| - 2.6e-22 78.4 0.1 4.6e-22 77.6 0.1 1.4 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|410670827|ref|YP_006923198.1| - 3.1e-16 59.3 0.0 5.9e-16 58.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|410670827|ref|YP_006923198.1| - 5.9e-10 38.6 0.0 1.1e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|410670827|ref|YP_006923198.1| - 4.9e-07 30.2 0.0 9.7e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Arf PF00025.16 gi|410670827|ref|YP_006923198.1| - 0.0067 15.6 0.1 0.25 10.5 0.0 2.7 1 1 1 2 2 2 1 ADP-ribosylation factor family DUF258 PF03193.11 gi|410670827|ref|YP_006923198.1| - 0.11 11.6 0.1 0.82 8.8 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function, DUF258 Aminotran_1_2 PF00155.16 gi|410670828|ref|YP_006923199.1| - 3.4e-69 233.5 0.0 3.9e-69 233.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|410670828|ref|YP_006923199.1| - 9.9e-13 47.8 0.0 1.8e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|410670828|ref|YP_006923199.1| - 3.4e-10 39.2 0.0 4.7e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|410670828|ref|YP_006923199.1| - 5.2e-08 31.5 0.0 7.4e-08 31.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|410670828|ref|YP_006923199.1| - 3.9e-06 26.2 0.0 6.9e-06 25.4 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase AP_endonuc_2 PF01261.19 gi|410670828|ref|YP_006923199.1| - 0.053 12.8 0.0 1.3 8.3 0.0 2.3 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel SIS PF01380.17 gi|410670829|ref|YP_006923200.1| - 8.8e-18 64.1 0.0 1.4e-17 63.4 0.0 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|410670829|ref|YP_006923200.1| - 2.1e-08 33.9 4.2 7.8e-05 22.4 0.7 2.2 1 1 1 2 2 2 2 SIS domain DUF2073 PF09846.4 gi|410670831|ref|YP_006923202.1| - 9.5e-43 144.1 0.8 1.1e-42 143.8 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) GTP_EFTU PF00009.22 gi|410670832|ref|YP_006923203.1| - 6.2e-17 61.6 0.9 2.2e-07 30.4 0.0 2.6 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|410670832|ref|YP_006923203.1| - 1.5e-15 57.1 0.0 2.2e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase Arf PF00025.16 gi|410670832|ref|YP_006923203.1| - 1.1e-06 27.9 0.0 0.011 14.9 0.0 2.3 2 0 0 2 2 2 2 ADP-ribosylation factor family SRPRB PF09439.5 gi|410670832|ref|YP_006923203.1| - 9.2e-05 21.7 0.0 0.044 13.0 0.0 2.4 2 1 0 2 2 2 2 Signal recognition particle receptor beta subunit FeoB_N PF02421.13 gi|410670832|ref|YP_006923203.1| - 0.00014 21.1 0.8 0.0043 16.3 0.5 2.7 1 1 0 1 1 1 1 Ferrous iron transport protein B AAA_17 PF13207.1 gi|410670832|ref|YP_006923203.1| - 0.00082 20.1 0.1 0.0019 19.0 0.1 1.7 1 1 0 1 1 1 1 AAA domain Septin PF00735.13 gi|410670832|ref|YP_006923203.1| - 0.00083 18.4 0.0 0.00098 18.2 0.0 1.2 1 0 0 1 1 1 1 Septin Ras PF00071.17 gi|410670832|ref|YP_006923203.1| - 0.001 18.4 0.0 0.11 11.8 0.0 2.4 2 1 0 2 2 2 1 Ras family DUF258 PF03193.11 gi|410670832|ref|YP_006923203.1| - 0.0014 17.8 0.0 0.0026 16.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA PF00004.24 gi|410670832|ref|YP_006923203.1| - 0.002 18.3 0.1 0.0059 16.8 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|410670832|ref|YP_006923203.1| - 0.002 18.4 0.0 0.0041 17.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|410670832|ref|YP_006923203.1| - 0.0036 17.0 0.0 0.0096 15.6 0.0 1.7 2 0 0 2 2 2 1 NTPase AAA_22 PF13401.1 gi|410670832|ref|YP_006923203.1| - 0.0042 17.2 0.0 0.012 15.7 0.0 1.8 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|410670832|ref|YP_006923203.1| - 0.0047 16.9 0.0 0.0074 16.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|410670832|ref|YP_006923203.1| - 0.0054 16.4 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Miro PF08477.8 gi|410670832|ref|YP_006923203.1| - 0.0073 16.7 0.0 0.045 14.2 0.0 2.0 1 1 0 1 1 1 1 Miro-like protein Arch_ATPase PF01637.13 gi|410670832|ref|YP_006923203.1| - 0.0083 15.8 0.0 0.016 14.9 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase ABC_tran PF00005.22 gi|410670832|ref|YP_006923203.1| - 0.012 15.9 0.1 0.021 15.1 0.0 1.5 1 1 0 1 1 1 0 ABC transporter Parvo_NS1 PF01057.12 gi|410670832|ref|YP_006923203.1| - 0.02 13.7 0.0 0.03 13.1 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ArgK PF03308.11 gi|410670832|ref|YP_006923203.1| - 0.026 13.3 0.1 0.49 9.1 0.0 2.5 3 1 0 3 3 3 0 ArgK protein RNA_helicase PF00910.17 gi|410670832|ref|YP_006923203.1| - 0.035 14.2 0.0 0.066 13.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.17 gi|410670832|ref|YP_006923203.1| - 0.036 12.9 0.0 0.053 12.3 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_28 PF13521.1 gi|410670832|ref|YP_006923203.1| - 0.039 13.9 0.0 0.063 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|410670832|ref|YP_006923203.1| - 0.048 13.4 0.0 9 6.0 0.0 2.3 1 1 0 2 2 2 0 Dynamin family AAA_24 PF13479.1 gi|410670832|ref|YP_006923203.1| - 0.06 12.9 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|410670832|ref|YP_006923203.1| - 0.078 12.4 0.1 0.34 10.3 0.1 2.1 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|410670832|ref|YP_006923203.1| - 0.084 12.5 0.0 0.39 10.3 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_14 PF13173.1 gi|410670832|ref|YP_006923203.1| - 0.1 12.4 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AIG1 PF04548.11 gi|410670832|ref|YP_006923203.1| - 0.1 11.6 0.0 0.16 11.0 0.0 1.5 1 1 0 1 1 1 0 AIG1 family AAA_10 PF12846.2 gi|410670832|ref|YP_006923203.1| - 0.12 11.8 0.0 0.25 10.7 0.0 1.7 1 1 0 1 1 1 0 AAA-like domain PPV_E1_C PF00519.12 gi|410670832|ref|YP_006923203.1| - 0.12 10.9 0.0 0.18 10.3 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase PhoU PF01895.14 gi|410670833|ref|YP_006923204.1| - 6.1e-19 68.2 9.3 2.7e-11 43.7 1.4 2.6 2 0 0 2 2 2 2 PhoU domain DUF2142 PF09913.4 gi|410670834|ref|YP_006923205.1| - 0.035 12.7 1.7 0.06 12.0 0.5 1.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2142) UbiA PF01040.13 gi|410670836|ref|YP_006923207.1| - 3.5e-26 91.9 8.2 4.2e-26 91.7 5.7 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF456 PF04306.8 gi|410670836|ref|YP_006923207.1| - 2.1 8.3 15.6 0.51 10.3 7.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF456) DUF1724 PF08350.5 gi|410670837|ref|YP_006923208.1| - 8.3e-23 79.6 0.2 3.4e-22 77.7 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|410670837|ref|YP_006923208.1| - 2.3e-05 23.9 0.1 6.1e-05 22.5 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|410670837|ref|YP_006923208.1| - 5.1e-05 22.8 0.0 9.2e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|410670837|ref|YP_006923208.1| - 0.00029 21.0 0.0 0.00054 20.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|410670837|ref|YP_006923208.1| - 0.00065 19.4 0.0 0.0013 18.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|410670837|ref|YP_006923208.1| - 0.00088 18.9 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|410670837|ref|YP_006923208.1| - 0.0024 17.6 0.0 0.0081 15.9 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_24 PF13412.1 gi|410670837|ref|YP_006923208.1| - 0.0029 16.9 0.0 0.0057 16.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HemN_C PF06969.11 gi|410670837|ref|YP_006923208.1| - 0.0061 16.5 0.0 0.028 14.4 0.0 2.1 3 0 0 3 3 3 1 HemN C-terminal domain HTH_11 PF08279.7 gi|410670837|ref|YP_006923208.1| - 0.046 13.3 0.4 0.083 12.5 0.0 1.6 2 0 0 2 2 2 0 HTH domain HTH_34 PF13601.1 gi|410670837|ref|YP_006923208.1| - 0.059 13.4 0.0 0.45 10.5 0.0 2.1 1 1 0 1 1 1 0 Winged helix DNA-binding domain AICARFT_IMPCHas PF01808.13 gi|410670838|ref|YP_006923209.1| - 6.8e-88 294.7 0.0 8.8e-88 294.4 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.17 gi|410670838|ref|YP_006923209.1| - 3.8e-14 52.3 0.0 7.2e-14 51.5 0.0 1.5 1 0 0 1 1 1 1 MGS-like domain MgsA_C PF12002.3 gi|410670838|ref|YP_006923209.1| - 0.11 12.2 0.0 0.46 10.1 0.0 2.0 2 0 0 2 2 2 0 MgsA AAA+ ATPase C terminal PAPS_reduct PF01507.14 gi|410670839|ref|YP_006923210.1| - 9.2e-45 152.5 0.0 1.4e-44 151.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.15 gi|410670839|ref|YP_006923210.1| - 3.9e-21 74.5 0.3 9e-21 73.3 0.2 1.6 1 0 0 1 1 1 1 PUA domain Fer4_7 PF12838.2 gi|410670839|ref|YP_006923210.1| - 0.00092 19.5 15.6 0.00092 19.5 10.8 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410670839|ref|YP_006923210.1| - 0.0013 18.5 13.5 0.0013 18.5 9.4 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410670839|ref|YP_006923210.1| - 0.012 15.8 0.1 0.012 15.8 0.1 3.5 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|410670839|ref|YP_006923210.1| - 0.04 14.3 14.0 0.33 11.3 0.1 3.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410670839|ref|YP_006923210.1| - 1.2 9.4 25.3 0.054 13.7 11.8 2.9 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|410670839|ref|YP_006923210.1| - 2.5 8.2 23.7 0.2 11.7 1.3 3.4 2 2 2 4 4 4 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410670839|ref|YP_006923210.1| - 8 6.4 29.6 0.065 13.1 0.6 3.2 3 1 1 4 4 4 0 4Fe-4S dicluster domain Cas_Cas4 PF01930.12 gi|410670840|ref|YP_006923211.1| - 2.2e-11 43.9 0.0 5.6e-09 36.1 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|410670840|ref|YP_006923211.1| - 0.0074 15.6 0.0 0.82 8.9 0.0 2.2 2 0 0 2 2 2 2 PD-(D/E)XK nuclease superfamily HTH_3 PF01381.17 gi|410670841|ref|YP_006923212.1| - 1.3e-07 31.3 0.0 3.7e-07 29.8 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|410670841|ref|YP_006923212.1| - 9.9e-07 28.7 0.0 3.2e-06 27.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|410670841|ref|YP_006923212.1| - 0.0062 16.7 0.0 0.013 15.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain ACP_syn_III_C PF08541.5 gi|410670842|ref|YP_006923213.1| - 6.4e-10 38.9 0.2 2.1e-09 37.2 0.0 2.0 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_N PF01154.12 gi|410670842|ref|YP_006923213.1| - 3.6e-06 26.6 0.3 4.9e-06 26.2 0.2 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|410670842|ref|YP_006923213.1| - 4.7e-05 23.0 0.0 0.0014 18.1 0.0 2.5 2 1 1 3 3 3 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.5 gi|410670842|ref|YP_006923213.1| - 0.0065 16.1 2.2 0.0065 16.1 1.5 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|410670842|ref|YP_006923213.1| - 0.02 13.8 0.7 0.033 13.1 0.5 1.3 1 0 0 1 1 1 0 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|410670843|ref|YP_006923214.1| - 6.7e-13 48.1 2.7 1.3e-11 43.9 1.6 2.6 1 1 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|410670843|ref|YP_006923214.1| - 6.8e-12 44.9 3.2 6.4e-11 41.7 0.8 2.2 2 0 0 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|410670843|ref|YP_006923214.1| - 3.3e-05 23.4 7.3 0.00015 21.3 4.4 2.4 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|410670843|ref|YP_006923214.1| - 0.024 14.4 3.9 0.13 12.1 0.0 3.0 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.5 gi|410670843|ref|YP_006923214.1| - 0.85 9.3 4.6 4.5 7.0 0.9 2.9 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF35 PF01796.12 gi|410670844|ref|YP_006923215.1| - 1.4e-18 66.8 0.1 1.9e-18 66.4 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|410670844|ref|YP_006923215.1| - 9.5e-10 38.1 1.1 1.6e-09 37.3 0.8 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C3HC4_3 PF13920.1 gi|410670844|ref|YP_006923215.1| - 0.017 14.7 1.1 0.025 14.2 0.8 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF1272 PF06906.6 gi|410670844|ref|YP_006923215.1| - 0.065 13.0 0.6 0.11 12.4 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) tRNA-synt_1g PF09334.6 gi|410670844|ref|YP_006923215.1| - 0.069 11.8 0.0 0.083 11.5 0.0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (M) DZR PF12773.2 gi|410670844|ref|YP_006923215.1| - 0.09 12.6 1.0 0.14 12.0 0.7 1.2 1 0 0 1 1 1 0 Double zinc ribbon CYTH PF01928.16 gi|410670845|ref|YP_006923216.1| - 3.4e-36 124.6 0.3 3.9e-36 124.4 0.2 1.0 1 0 0 1 1 1 1 CYTH domain tRNA-synt_1g PF09334.6 gi|410670846|ref|YP_006923217.1| - 7.6e-142 472.5 0.0 1.1e-141 472.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|410670846|ref|YP_006923217.1| - 4.8e-27 93.6 0.5 1e-26 92.6 0.4 1.6 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|410670846|ref|YP_006923217.1| - 1.1e-23 83.1 0.0 3.2e-11 41.9 0.0 3.9 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|410670846|ref|YP_006923217.1| - 3.9e-14 52.4 0.0 3e-09 36.4 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|410670846|ref|YP_006923217.1| - 1.4e-13 50.8 0.2 2.3e-13 50.1 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.13 gi|410670846|ref|YP_006923217.1| - 0.0016 17.2 0.3 0.9 8.1 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|410670846|ref|YP_006923217.1| - 0.025 13.4 0.0 3.3 6.4 0.0 2.5 2 1 1 3 3 3 0 tRNA synthetases class I (R) zinc_ribbon_2 PF13240.1 gi|410670846|ref|YP_006923217.1| - 0.25 10.8 10.2 0.11 12.0 2.2 2.9 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|410670846|ref|YP_006923217.1| - 0.27 11.0 8.8 2.5 8.0 6.1 2.3 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|410670846|ref|YP_006923217.1| - 7 6.0 10.6 1.4 8.1 0.9 2.9 2 1 1 3 3 3 0 zinc-ribbon domain Peptidase_S49 PF01343.13 gi|410670848|ref|YP_006923219.1| - 2e-43 147.8 0.1 5.2e-43 146.4 0.0 1.7 1 1 1 2 2 2 1 Peptidase family S49 CLP_protease PF00574.18 gi|410670848|ref|YP_006923219.1| - 8.4e-09 35.3 1.0 2.4e-06 27.3 0.2 2.3 2 0 0 2 2 2 2 Clp protease DUF457 PF04307.9 gi|410670849|ref|YP_006923220.1| - 2.2e-05 23.8 4.7 2.5e-05 23.6 3.3 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4184 PF13803.1 gi|410670849|ref|YP_006923220.1| - 0.012 14.9 0.1 0.018 14.3 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4184) Cation_ATPase_C PF00689.16 gi|410670849|ref|YP_006923220.1| - 0.1 12.1 1.3 0.12 11.9 0.9 1.1 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus Ni_hydr_CYTB PF01292.15 gi|410670849|ref|YP_006923220.1| - 3 7.1 5.9 26 4.1 4.1 2.0 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 FtsX PF02687.16 gi|410670849|ref|YP_006923220.1| - 4.2 7.1 6.2 1.4 8.6 1.4 1.9 1 1 1 2 2 2 0 FtsX-like permease family Adenine_glyco PF03352.8 gi|410670850|ref|YP_006923221.1| - 3.3e-82 274.3 0.0 3.7e-82 274.1 0.0 1.0 1 0 0 1 1 1 1 Methyladenine glycosylase HhH-GPD PF00730.20 gi|410670850|ref|YP_006923221.1| - 0.022 15.0 0.0 0.029 14.6 0.0 1.3 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein Y_phosphatase3C PF13348.1 gi|410670850|ref|YP_006923221.1| - 0.035 14.2 0.0 0.072 13.2 0.0 1.5 1 0 0 1 1 1 0 Tyrosine phosphatase family C-terminal region MA-Mit PF09245.5 gi|410670850|ref|YP_006923221.1| - 0.047 12.9 0.2 0.071 12.3 0.1 1.2 1 0 0 1 1 1 0 Mycoplasma arthritidis-derived mitogen Methyltransf_11 PF08241.7 gi|410670851|ref|YP_006923222.1| - 4.5e-15 55.9 0.0 8.2e-15 55.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|410670851|ref|YP_006923222.1| - 1.9e-08 34.2 0.0 3.4e-08 33.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|410670851|ref|YP_006923222.1| - 2.1e-06 28.1 0.0 4.1e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|410670851|ref|YP_006923222.1| - 5.8e-05 22.3 0.0 8.7e-05 21.7 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.10 gi|410670851|ref|YP_006923222.1| - 9.5e-05 22.1 0.0 0.00014 21.5 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_18 PF12847.2 gi|410670851|ref|YP_006923222.1| - 0.00011 22.7 0.1 0.0011 19.4 0.1 2.4 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|410670851|ref|YP_006923222.1| - 0.00019 21.0 0.0 0.00049 19.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|410670851|ref|YP_006923222.1| - 0.002 18.4 0.0 0.004 17.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Nitroreductase PF00881.19 gi|410670852|ref|YP_006923223.1| - 9.1e-28 97.1 0.0 1.1e-27 96.8 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family DUF1939 PF09154.5 gi|410670853|ref|YP_006923224.1| - 0.06 13.2 0.1 0.072 13.0 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1939) IF-2B PF01008.12 gi|410670854|ref|YP_006923225.1| - 7e-85 284.4 2.4 7.9e-85 284.2 1.7 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Ribosomal_S2 PF00318.15 gi|410670854|ref|YP_006923225.1| - 0.021 14.0 0.2 0.057 12.6 0.0 1.8 2 1 0 2 2 2 0 Ribosomal protein S2 OrfB_IS605 PF01385.14 gi|410670855|ref|YP_006923226.1| - 2.1e-16 60.0 1.0 3.5e-16 59.2 0.7 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|410670855|ref|YP_006923226.1| - 2e-12 46.5 0.1 7.5e-12 44.7 0.0 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Trns_repr_metal PF02583.12 gi|410670855|ref|YP_006923226.1| - 0.049 13.8 0.1 0.14 12.4 0.0 1.8 1 0 0 1 1 1 0 Metal-sensitive transcriptional repressor HTH_OrfB_IS605 PF12323.3 gi|410670855|ref|YP_006923226.1| - 0.059 12.7 0.1 0.12 11.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain NTase_sub_bind PF08780.6 gi|410670856|ref|YP_006923227.1| - 1.6e-14 53.7 0.1 1.6e-14 53.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase substrate binding protein like DUF86 PF01934.12 gi|410670856|ref|YP_006923227.1| - 0.001 18.6 0.1 0.0011 18.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DDE_Tnp_1 PF01609.16 gi|410670857|ref|YP_006923228.1| - 4.6e-09 36.1 2.6 5.2e-08 32.7 1.8 2.1 1 1 0 1 1 1 1 Transposase DDE domain Amnionless PF14828.1 gi|410670857|ref|YP_006923228.1| - 3.1 6.1 5.0 0.63 8.4 1.1 1.4 2 0 0 2 2 2 0 Amnionless DUF772 PF05598.6 gi|410670858|ref|YP_006923229.1| - 7.1e-21 73.9 0.0 1.4e-20 72.9 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|410670858|ref|YP_006923229.1| - 5.1e-13 49.0 2.2 3.9e-11 42.9 1.5 2.3 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|410670858|ref|YP_006923229.1| - 0.00017 21.2 0.1 0.00031 20.3 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|410670858|ref|YP_006923229.1| - 0.00032 20.4 0.1 0.00073 19.3 0.0 1.7 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|410670858|ref|YP_006923229.1| - 0.0017 18.3 0.4 0.0033 17.4 0.3 1.5 1 0 0 1 1 1 1 Transposase DDE domain DUF3693 PF12472.3 gi|410670858|ref|YP_006923229.1| - 0.12 11.9 0.1 0.27 10.8 0.1 1.6 1 0 0 1 1 1 0 Phage related protein NTP_transf_2 PF01909.18 gi|410670860|ref|YP_006923231.1| - 7.5e-09 35.8 0.1 8.4e-09 35.6 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Peptidase_M44 PF03410.8 gi|410670860|ref|YP_006923231.1| - 0.02 13.1 0.0 0.024 12.9 0.0 1.0 1 0 0 1 1 1 0 Protein G1 DUF294 PF03445.8 gi|410670860|ref|YP_006923231.1| - 0.1 12.2 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 DUF2252 PF10009.4 gi|410670861|ref|YP_006923232.1| - 2.1e-128 428.5 0.1 2.4e-128 428.3 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2252) Aldedh PF00171.17 gi|410670863|ref|YP_006923234.1| - 1.9e-150 501.2 0.1 2.1e-150 501.0 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF2450 PF10475.4 gi|410670863|ref|YP_006923234.1| - 0.052 12.4 0.1 0.078 11.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function N-terminal domain (DUF2450) YoaP PF14268.1 gi|410670865|ref|YP_006923235.1| - 2.8e-11 42.4 0.0 5.1e-11 41.6 0.0 1.5 1 0 0 1 1 1 1 YoaP-like Acetyltransf_1 PF00583.19 gi|410670865|ref|YP_006923235.1| - 6.8e-05 22.8 0.0 0.00016 21.6 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|410670865|ref|YP_006923235.1| - 0.0059 16.7 0.3 0.015 15.3 0.2 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain zf-C2HC5 PF06221.8 gi|410670865|ref|YP_006923235.1| - 0.0093 15.7 2.6 0.025 14.3 1.8 1.7 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type Acetyltransf_CG PF14542.1 gi|410670865|ref|YP_006923235.1| - 0.01 15.7 2.4 0.024 14.5 0.0 2.5 3 0 0 3 3 3 1 GCN5-related N-acetyl-transferase GATase_7 PF13537.1 gi|410670865|ref|YP_006923235.1| - 0.14 11.8 0.0 1.2 8.9 0.0 2.3 2 0 0 2 2 2 0 Glutamine amidotransferase domain DUF1405 PF07187.6 gi|410670866|ref|YP_006923237.1| - 0.011 15.4 1.9 0.015 15.0 1.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1405) DUF2207 PF09972.4 gi|410670866|ref|YP_006923237.1| - 4.7 5.6 9.2 0.69 8.4 3.8 1.5 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) MCPsignal PF00015.16 gi|410670867|ref|YP_006923238.1| - 1.1e-58 198.3 68.9 3.8e-55 186.7 26.4 4.8 2 2 1 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_3 PF08447.6 gi|410670867|ref|YP_006923238.1| - 6.5e-20 71.0 0.1 2e-18 66.2 0.0 2.5 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|410670867|ref|YP_006923238.1| - 7e-17 61.7 3.4 3.3e-07 30.6 0.0 4.3 5 1 0 5 5 5 2 PAS domain PAS PF00989.19 gi|410670867|ref|YP_006923238.1| - 6.6e-13 48.4 0.5 1.2e-06 28.2 0.0 4.0 4 0 0 4 4 4 2 PAS fold PAS_4 PF08448.5 gi|410670867|ref|YP_006923238.1| - 1.7e-12 47.3 0.0 2e-06 27.7 0.0 3.1 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|410670867|ref|YP_006923238.1| - 0.0049 16.6 0.0 0.026 14.3 0.0 2.3 2 0 0 2 2 1 1 PAS domain HAMP PF00672.20 gi|410670867|ref|YP_006923238.1| - 0.0079 16.3 11.7 0.03 14.4 0.0 6.5 7 3 0 7 7 7 1 HAMP domain PAS_10 PF13596.1 gi|410670867|ref|YP_006923238.1| - 0.21 11.8 7.6 0.94 9.7 0.0 4.8 5 1 0 5 5 4 0 PAS domain CHDCT2 PF08074.6 gi|410670867|ref|YP_006923238.1| - 1 9.0 13.7 1.7 8.3 3.7 3.7 2 1 1 3 3 3 0 CHDCT2 (NUC038) domain T2SF PF00482.18 gi|410670867|ref|YP_006923238.1| - 2.9 7.7 14.1 0.48 10.3 0.5 4.7 4 1 2 6 6 6 0 Type II secretion system (T2SS), protein F DUF4559 PF15112.1 gi|410670867|ref|YP_006923238.1| - 4.6 6.3 19.6 0.015 14.4 1.6 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4559) Aldedh PF00171.17 gi|410670870|ref|YP_006923241.1| - 6.6e-141 469.7 0.0 7.4e-141 469.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family TPP_enzyme_N PF02776.13 gi|410670871|ref|YP_006923242.1| - 1.4e-53 180.9 0.0 2.7e-53 179.9 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|410670871|ref|YP_006923242.1| - 1.4e-38 131.8 0.1 4.5e-38 130.2 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|410670871|ref|YP_006923242.1| - 7e-31 106.8 0.0 6.1e-30 103.7 0.0 2.4 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain DXP_synthase_N PF13292.1 gi|410670871|ref|YP_006923242.1| - 0.067 12.1 0.0 0.18 10.7 0.0 1.7 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase tRNA-synt_1d PF00750.14 gi|410670873|ref|YP_006923244.1| - 1.6e-58 198.2 0.1 2.2e-58 197.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|410670873|ref|YP_006923244.1| - 4.2e-32 110.5 0.0 1.4e-31 108.8 0.0 1.9 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|410670873|ref|YP_006923244.1| - 5.7e-12 46.0 0.1 1.6e-11 44.6 0.0 1.8 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|410670873|ref|YP_006923244.1| - 6.3e-06 25.0 0.0 0.012 14.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|410670873|ref|YP_006923244.1| - 0.00047 18.9 0.1 0.08 11.5 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|410670873|ref|YP_006923244.1| - 0.00075 18.7 0.1 0.0014 17.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.17 gi|410670873|ref|YP_006923244.1| - 0.062 11.2 0.0 0.096 10.6 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) eRF1_2 PF03464.10 gi|410670874|ref|YP_006923245.1| - 5e-35 120.7 0.1 9e-35 119.8 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|410670874|ref|YP_006923245.1| - 7e-34 116.4 0.0 6.3e-32 110.1 0.0 2.6 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|410670874|ref|YP_006923245.1| - 9.4e-23 80.2 0.0 1.8e-22 79.3 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 1 Rad50_zn_hook PF04423.9 gi|410670874|ref|YP_006923245.1| - 2.6e-05 23.6 0.2 0.00094 18.6 0.0 3.1 2 0 0 2 2 2 1 Rad50 zinc hook motif DNA_ligase_ZBD PF03119.11 gi|410670874|ref|YP_006923245.1| - 0.035 13.8 2.3 0.036 13.7 0.3 2.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Wyosine_form PF08608.7 gi|410670875|ref|YP_006923246.1| - 6.2e-23 80.6 0.0 1.7e-22 79.3 0.0 1.7 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.16 gi|410670875|ref|YP_006923246.1| - 8.7e-20 71.5 0.6 3.8e-19 69.4 0.4 2.0 1 1 0 1 1 1 1 Radical SAM superfamily HAD_2 PF13419.1 gi|410670875|ref|YP_006923246.1| - 0.0013 18.9 0.0 0.0041 17.3 0.0 1.7 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase Fer4_14 PF13394.1 gi|410670875|ref|YP_006923246.1| - 0.0062 16.5 0.0 0.016 15.2 0.0 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|410670875|ref|YP_006923246.1| - 0.0063 16.6 0.1 0.049 13.7 0.1 2.2 1 1 0 1 1 1 1 4Fe-4S single cluster domain TPR_1 PF00515.23 gi|410670876|ref|YP_006923247.1| - 1.5e-33 113.0 14.7 7.6e-08 31.6 0.5 6.3 5 1 1 6 6 6 6 Tetratricopeptide repeat TPR_2 PF07719.12 gi|410670876|ref|YP_006923247.1| - 1.6e-31 105.6 10.9 4.2e-07 29.3 0.6 6.2 4 1 2 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.1 gi|410670876|ref|YP_006923247.1| - 2.4e-28 97.5 22.0 2.6e-10 39.8 1.0 4.9 1 1 4 5 5 5 5 TPR repeat TPR_17 PF13431.1 gi|410670876|ref|YP_006923247.1| - 1.4e-17 62.3 6.4 0.0042 17.1 0.1 6.2 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|410670876|ref|YP_006923247.1| - 5.7e-17 61.4 10.3 2.4e-05 24.1 0.4 5.8 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|410670876|ref|YP_006923247.1| - 6.4e-17 61.7 0.1 0.00032 21.3 0.0 4.3 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|410670876|ref|YP_006923247.1| - 8.8e-16 56.4 13.7 0.00013 21.5 0.1 6.0 4 1 2 6 6 6 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|410670876|ref|YP_006923247.1| - 3.2e-13 49.3 0.0 1.9e-05 24.4 0.0 4.0 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|410670876|ref|YP_006923247.1| - 4.9e-13 48.4 1.2 0.049 14.2 0.2 6.1 2 1 4 6 6 6 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|410670876|ref|YP_006923247.1| - 4.9e-13 49.2 2.9 0.00063 20.0 0.1 4.1 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|410670876|ref|YP_006923247.1| - 8e-13 47.1 4.2 0.012 15.3 0.0 6.1 6 0 0 6 6 6 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|410670876|ref|YP_006923247.1| - 1.3e-12 47.6 16.4 5.8e-07 29.5 1.8 3.8 2 1 2 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.1 gi|410670876|ref|YP_006923247.1| - 3.1e-06 26.9 2.7 0.75 9.8 0.1 4.9 5 1 1 6 6 5 2 Tetratricopeptide repeat TPR_15 PF13429.1 gi|410670876|ref|YP_006923247.1| - 3.7e-06 26.2 1.0 4.9e-05 22.5 0.2 2.7 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|410670876|ref|YP_006923247.1| - 4.1e-06 26.8 3.8 0.58 10.0 0.0 4.4 4 1 0 4 4 4 2 Tetratricopeptide repeat DUF3856 PF12968.2 gi|410670876|ref|YP_006923247.1| - 4.4e-06 26.5 2.2 0.02 14.7 0.2 3.7 2 1 0 3 3 3 1 Domain of Unknown Function (DUF3856) Fis1_TPR_C PF14853.1 gi|410670876|ref|YP_006923247.1| - 4.6e-06 26.4 9.0 0.00019 21.2 0.0 4.7 6 0 0 6 6 5 1 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.3 gi|410670876|ref|YP_006923247.1| - 6e-06 25.2 0.4 0.011 14.5 0.0 3.6 2 1 2 4 4 4 2 NMDA receptor-regulated protein 1 MIT PF04212.13 gi|410670876|ref|YP_006923247.1| - 0.00037 20.3 13.3 3 7.7 1.5 6.2 3 2 2 5 5 5 1 MIT (microtubule interacting and transport) domain BTAD PF03704.12 gi|410670876|ref|YP_006923247.1| - 0.0012 19.1 0.3 2.7 8.2 0.0 3.5 2 1 1 3 3 3 1 Bacterial transcriptional activator domain TPR_6 PF13174.1 gi|410670876|ref|YP_006923247.1| - 0.0014 18.9 7.4 10 6.8 0.1 6.0 5 1 0 5 5 5 0 Tetratricopeptide repeat PPR PF01535.15 gi|410670876|ref|YP_006923247.1| - 0.002 17.9 5.3 3.8 7.6 0.0 5.3 5 2 3 8 8 7 1 PPR repeat RPN7 PF10602.4 gi|410670876|ref|YP_006923247.1| - 0.0077 15.6 2.7 3.3 7.0 0.0 4.3 2 1 3 5 5 5 1 26S proteasome subunit RPN7 TPR_5 PF12688.2 gi|410670876|ref|YP_006923247.1| - 0.025 14.5 0.2 0.38 10.7 0.0 3.0 2 1 1 3 3 2 0 Tetratrico peptide repeat Coatomer_E PF04733.9 gi|410670876|ref|YP_006923247.1| - 0.063 12.4 1.7 4.5 6.3 0.1 2.9 3 1 1 4 4 4 0 Coatomer epsilon subunit TPR_20 PF14561.1 gi|410670876|ref|YP_006923247.1| - 0.086 12.9 0.9 9.5 6.4 0.0 3.6 2 1 2 4 4 4 0 Tetratricopeptide repeat ChAPs PF09295.5 gi|410670876|ref|YP_006923247.1| - 0.091 11.5 0.0 0.18 10.5 0.0 1.4 1 1 0 1 1 1 0 ChAPs (Chs5p-Arf1p-binding proteins) AP2 PF00847.15 gi|410670876|ref|YP_006923247.1| - 0.14 12.2 7.8 30 4.8 0.2 5.2 5 1 1 6 6 5 0 AP2 domain PPR_1 PF12854.2 gi|410670876|ref|YP_006923247.1| - 0.16 11.4 0.4 2.3 7.7 0.0 2.8 2 0 0 2 2 2 0 PPR repeat TPR_3 PF07720.7 gi|410670876|ref|YP_006923247.1| - 0.98 9.2 7.1 14 5.6 0.0 4.9 6 0 0 6 6 6 0 Tetratricopeptide repeat URO-D PF01208.12 gi|410670877|ref|YP_006923248.1| - 7.6e-84 281.5 0.9 8.6e-84 281.3 0.6 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) MtmB PF05369.7 gi|410670878|ref|YP_006923249.1| - 2.5e-75 253.3 0.0 3.4e-75 252.9 0.0 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB MtmB PF05369.7 gi|410670879|ref|YP_006923250.1| - 1.3e-151 504.8 4.0 1.5e-151 504.6 2.8 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB MtmB PF05369.7 gi|410670880|ref|YP_006923251.1| - 3.8e-90 302.2 0.3 4.2e-90 302.0 0.2 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB MtmB PF05369.7 gi|410670881|ref|YP_006923252.1| - 8.7e-128 426.3 2.2 9.6e-128 426.1 1.6 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB B12-binding PF02310.14 gi|410670882|ref|YP_006923253.1| - 8.5e-17 61.1 0.2 1.7e-16 60.1 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|410670882|ref|YP_006923253.1| - 3.9e-16 58.8 0.3 6.8e-16 58.0 0.2 1.4 1 0 0 1 1 1 1 B12 binding domain Dimeth_Pyl PF09505.5 gi|410670883|ref|YP_006923254.1| - 1.1e-52 178.9 1.9 1.2e-52 178.7 1.3 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) Antimicrobial_7 PF08102.6 gi|410670883|ref|YP_006923254.1| - 0.0047 16.9 0.0 0.011 15.6 0.0 1.7 1 0 0 1 1 1 1 Scorpion antimicrobial peptide Dimeth_Pyl PF09505.5 gi|410670884|ref|YP_006923255.1| - 2.7e-213 708.4 8.1 3.1e-213 708.2 5.6 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) B12-binding PF02310.14 gi|410670885|ref|YP_006923256.1| - 5.9e-26 90.7 0.2 1.1e-25 89.8 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|410670885|ref|YP_006923256.1| - 2.1e-17 62.9 0.3 4.7e-17 61.7 0.2 1.6 1 0 0 1 1 1 1 B12 binding domain SpoVAD PF07451.6 gi|410670885|ref|YP_006923256.1| - 0.014 13.8 0.1 0.019 13.4 0.1 1.2 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) ComA PF02679.10 gi|410670885|ref|YP_006923256.1| - 0.026 13.5 0.0 0.27 10.2 0.0 2.0 2 0 0 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) EmrE PF13536.1 gi|410670888|ref|YP_006923259.1| - 2.6e-12 46.9 10.4 2.6e-12 46.9 7.2 3.7 4 1 0 4 4 4 3 Multidrug resistance efflux transporter EamA PF00892.15 gi|410670888|ref|YP_006923259.1| - 5.5e-09 36.1 44.5 4e-07 30.1 9.4 3.3 4 1 0 4 4 4 2 EamA-like transporter family B12-binding PF02310.14 gi|410670890|ref|YP_006923261.1| - 6.6e-20 71.1 1.7 7.5e-20 71.0 0.1 1.8 2 1 1 3 3 3 1 B12 binding domain B12-binding_2 PF02607.12 gi|410670890|ref|YP_006923261.1| - 1.7e-19 69.6 0.5 1.7e-19 69.6 0.3 2.0 2 0 0 2 2 2 1 B12 binding domain SpoVAD PF07451.6 gi|410670890|ref|YP_006923261.1| - 0.0029 16.1 0.1 0.0038 15.7 0.1 1.2 1 0 0 1 1 1 1 Stage V sporulation protein AD (SpoVAD) MTTB PF06253.6 gi|410670891|ref|YP_006923262.1| - 3e-22 78.0 0.0 3.4e-22 77.8 0.0 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) Antimicrobial15 PF08110.7 gi|410670891|ref|YP_006923262.1| - 0.088 12.8 1.9 26 5.0 0.0 3.5 3 0 0 3 3 3 0 Ocellatin family MTTB PF06253.6 gi|410670892|ref|YP_006923263.1| - 6.1e-54 182.6 0.0 6.7e-54 182.4 0.0 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) Hydant_A_N PF05378.8 gi|410670894|ref|YP_006923265.1| - 3.5e-38 130.8 1.4 1.8e-36 125.3 0.2 2.6 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region Hydantoinase_A PF01968.13 gi|410670894|ref|YP_006923265.1| - 1.5e-37 129.2 0.7 1.9e-36 125.6 0.0 2.1 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.1 gi|410670894|ref|YP_006923265.1| - 1.2e-07 30.4 0.1 0.00012 20.6 0.0 2.1 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|410670894|ref|YP_006923265.1| - 0.0012 18.1 0.2 0.0039 16.5 0.0 2.0 2 1 1 3 3 3 1 BadF/BadG/BcrA/BcrD ATPase family DDE_Tnp_1 PF01609.16 gi|410670895|ref|YP_006923266.1| - 6.8e-09 35.5 2.7 7.2e-08 32.2 1.8 2.1 1 1 0 1 1 1 1 Transposase DDE domain DDE_5 PF13546.1 gi|410670895|ref|YP_006923266.1| - 0.039 12.7 0.0 0.072 11.9 0.0 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease Hydantoinase_A PF01968.13 gi|410670896|ref|YP_006923267.1| - 4.3e-28 98.2 0.0 6.4e-28 97.6 0.0 1.3 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase PAS_3 PF08447.6 gi|410670897|ref|YP_006923268.1| - 3.6e-39 132.7 1.2 1.4e-18 66.7 0.0 3.8 5 0 0 5 5 5 2 PAS fold GAF_2 PF13185.1 gi|410670897|ref|YP_006923268.1| - 4e-31 108.5 0.0 4.8e-17 62.8 0.0 2.5 2 0 0 2 2 2 2 GAF domain PAS_9 PF13426.1 gi|410670897|ref|YP_006923268.1| - 1.4e-25 89.6 0.1 8.5e-06 26.0 0.0 4.5 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|410670897|ref|YP_006923268.1| - 9.3e-24 83.3 0.0 6.7e-07 29.0 0.0 4.5 4 0 0 4 4 4 4 PAS fold PAS_4 PF08448.5 gi|410670897|ref|YP_006923268.1| - 1.8e-18 66.5 0.0 6e-06 26.2 0.0 4.3 4 0 0 4 4 4 3 PAS fold GAF_3 PF13492.1 gi|410670897|ref|YP_006923268.1| - 2.2e-14 53.6 0.0 2.8e-09 37.1 0.0 2.9 3 0 0 3 3 3 2 GAF domain PAS_8 PF13188.1 gi|410670897|ref|YP_006923268.1| - 4.8e-12 45.2 0.0 5.3e-05 22.9 0.0 3.9 3 0 0 3 3 3 2 PAS domain GAF PF01590.21 gi|410670897|ref|YP_006923268.1| - 9.8e-05 22.5 0.0 0.088 12.9 0.0 2.9 2 1 0 2 2 2 2 GAF domain Hydantoinase_A PF01968.13 gi|410670898|ref|YP_006923269.1| - 1.9e-82 276.6 1.0 4.2e-81 272.2 0.1 2.8 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|410670898|ref|YP_006923269.1| - 7.5e-42 142.8 5.5 8.4e-40 136.1 0.6 3.2 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|410670898|ref|YP_006923269.1| - 5.6e-07 28.2 0.8 0.0016 16.8 0.1 2.1 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|410670898|ref|YP_006923269.1| - 0.0076 15.5 1.0 0.5 9.6 0.0 3.1 3 0 0 3 3 3 1 BadF/BadG/BcrA/BcrD ATPase family HisKA_2 PF07568.7 gi|410670900|ref|YP_006923271.1| - 1.2e-33 114.8 2.6 3e-33 113.4 1.8 1.8 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.21 gi|410670900|ref|YP_006923271.1| - 6.7e-11 41.8 0.1 1.4e-10 40.8 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cache_1 PF02743.13 gi|410670900|ref|YP_006923271.1| - 4.7e-10 38.8 0.1 1.7e-09 37.0 0.1 2.0 2 0 0 2 2 2 1 Cache domain HAMP PF00672.20 gi|410670900|ref|YP_006923271.1| - 6.9e-09 35.7 6.7 0.00069 19.7 0.1 3.9 3 1 1 4 4 4 2 HAMP domain HATPase_c_2 PF13581.1 gi|410670900|ref|YP_006923271.1| - 8.8e-06 25.5 0.0 1.7e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|410670900|ref|YP_006923271.1| - 3.8e-05 24.0 0.1 9.5e-05 22.7 0.1 1.7 1 0 0 1 1 1 1 HWE histidine kinase PAS_10 PF13596.1 gi|410670900|ref|YP_006923271.1| - 0.023 14.9 0.1 0.24 11.6 0.0 2.8 2 0 0 2 2 2 0 PAS domain Cache_2 PF08269.6 gi|410670900|ref|YP_006923271.1| - 0.032 14.2 5.1 2.2 8.2 0.0 3.5 3 0 0 3 3 3 0 Cache domain DnaB PF00772.16 gi|410670900|ref|YP_006923271.1| - 0.088 12.6 1.9 2.3 8.1 0.1 3.1 2 1 1 3 3 3 0 DnaB-like helicase N terminal domain Response_reg PF00072.19 gi|410670901|ref|YP_006923272.1| - 2.3e-20 72.6 0.3 2.7e-20 72.4 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain His_biosynth PF00977.16 gi|410670901|ref|YP_006923272.1| - 0.047 12.9 0.0 0.056 12.6 0.0 1.1 1 0 0 1 1 1 0 Histidine biosynthesis protein DUF1724 PF08350.5 gi|410670902|ref|YP_006923273.1| - 1.1e-19 69.7 0.4 3e-19 68.2 0.2 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_27 PF13463.1 gi|410670902|ref|YP_006923273.1| - 0.00013 22.2 0.0 0.00034 20.8 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|410670902|ref|YP_006923273.1| - 0.0012 18.5 0.4 0.0018 17.8 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HemN_C PF06969.11 gi|410670902|ref|YP_006923273.1| - 0.0031 17.5 0.0 0.021 14.9 0.0 2.4 3 0 0 3 3 3 1 HemN C-terminal domain HTH_45 PF14947.1 gi|410670902|ref|YP_006923273.1| - 0.0071 16.1 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HxlR PF01638.12 gi|410670902|ref|YP_006923273.1| - 0.021 14.4 0.1 0.056 13.0 0.1 1.8 1 1 0 1 1 1 0 HxlR-like helix-turn-helix TrmB PF01978.14 gi|410670902|ref|YP_006923273.1| - 0.032 13.9 0.1 0.062 13.0 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|410670902|ref|YP_006923273.1| - 0.073 12.7 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 HTH domain DUF505 PF04458.7 gi|410670902|ref|YP_006923273.1| - 0.078 11.0 0.2 0.11 10.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) AA_permease_2 PF13520.1 gi|410670904|ref|YP_006923275.1| - 1.6e-64 218.0 46.1 1.9e-64 217.7 32.0 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|410670904|ref|YP_006923275.1| - 2e-16 59.3 33.9 3e-16 58.8 23.5 1.4 1 0 0 1 1 1 1 Amino acid permease Dimeth_Pyl PF09505.5 gi|410670905|ref|YP_006923276.1| - 2.2e-57 194.3 2.1 2.4e-57 194.2 1.5 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) Antimicrobial_7 PF08102.6 gi|410670905|ref|YP_006923276.1| - 0.0053 16.7 0.0 0.012 15.5 0.0 1.6 1 0 0 1 1 1 1 Scorpion antimicrobial peptide Dimeth_Pyl PF09505.5 gi|410670906|ref|YP_006923277.1| - 3.5e-214 711.3 7.3 3.9e-214 711.2 5.1 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) B12-binding PF02310.14 gi|410670907|ref|YP_006923278.1| - 5.9e-26 90.7 0.2 1.1e-25 89.8 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|410670907|ref|YP_006923278.1| - 2.1e-17 62.9 0.3 4.7e-17 61.7 0.2 1.6 1 0 0 1 1 1 1 B12 binding domain SpoVAD PF07451.6 gi|410670907|ref|YP_006923278.1| - 0.014 13.8 0.1 0.019 13.4 0.1 1.2 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) ComA PF02679.10 gi|410670907|ref|YP_006923278.1| - 0.026 13.5 0.0 0.27 10.2 0.0 2.0 2 0 0 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) B12-binding PF02310.14 gi|410670908|ref|YP_006923279.1| - 8.9e-22 77.2 0.6 1.4e-21 76.6 0.1 1.5 2 0 0 2 2 2 1 B12 binding domain B12-binding_2 PF02607.12 gi|410670908|ref|YP_006923279.1| - 9.4e-14 51.2 0.3 1.8e-13 50.3 0.2 1.5 1 0 0 1 1 1 1 B12 binding domain URO-D PF01208.12 gi|410670909|ref|YP_006923280.1| - 5.4e-84 282.0 0.9 6.1e-84 281.8 0.6 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) URO-D PF01208.12 gi|410670910|ref|YP_006923281.1| - 1.1e-09 37.7 0.1 1.3e-09 37.5 0.1 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Desulfoferrodox PF01880.13 gi|410670911|ref|YP_006923282.1| - 3.1e-26 91.4 1.4 1.5e-21 76.4 0.1 2.1 2 0 0 2 2 2 2 Desulfoferrodoxin SoxY PF13501.1 gi|410670911|ref|YP_006923282.1| - 0.11 12.5 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 Sulfur oxidation protein SoxY DUF3955 PF13127.1 gi|410670912|ref|YP_006923283.1| - 0.18 11.3 7.2 0.42 10.1 1.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) Spore_YabQ PF09578.5 gi|410670912|ref|YP_006923283.1| - 2.8 7.9 7.3 9.5 6.2 1.0 2.2 1 1 0 2 2 2 0 Spore cortex protein YabQ (Spore_YabQ) DUF3007 PF11460.3 gi|410670913|ref|YP_006923284.1| - 2.2 8.3 5.3 1.4 8.9 2.5 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3007) AA_permease PF00324.16 gi|410670914|ref|YP_006923285.1| - 1.5e-43 148.8 40.4 2.1e-43 148.3 28.0 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|410670914|ref|YP_006923285.1| - 2.4e-24 85.6 43.3 5.4e-24 84.5 30.1 1.4 1 1 0 1 1 1 1 Amino acid permease Herpes_LMP1 PF05297.6 gi|410670914|ref|YP_006923285.1| - 0.094 11.6 9.5 0.037 12.9 1.1 2.4 2 0 0 2 2 2 0 Herpesvirus latent membrane protein 1 (LMP1) MtmB PF05369.7 gi|410670915|ref|YP_006923286.1| - 1e-150 501.9 2.8 1.1e-150 501.7 1.9 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB MtmB PF05369.7 gi|410670916|ref|YP_006923287.1| - 2.2e-31 108.5 0.4 2.4e-31 108.4 0.3 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB MtmB PF05369.7 gi|410670917|ref|YP_006923288.1| - 5.6e-52 176.4 0.4 7.4e-52 176.0 0.3 1.1 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB MtmB PF05369.7 gi|410670918|ref|YP_006923289.1| - 2.2e-125 418.3 7.7 2e-112 375.7 2.2 2.0 1 1 1 2 2 2 2 Monomethylamine methyltransferase MtmB B12-binding PF02310.14 gi|410670919|ref|YP_006923290.1| - 5.8e-17 61.6 0.1 9.9e-17 60.9 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|410670919|ref|YP_006923290.1| - 1.5e-16 60.1 0.1 2.5e-16 59.4 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain DUF1724 PF08350.5 gi|410670920|ref|YP_006923291.1| - 3.2e-23 81.0 0.5 6.5e-23 80.0 0.3 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_45 PF14947.1 gi|410670920|ref|YP_006923291.1| - 0.0039 16.9 0.1 0.0069 16.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|410670920|ref|YP_006923291.1| - 0.0055 17.0 0.1 0.01 16.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|410670920|ref|YP_006923291.1| - 0.047 13.3 1.4 0.089 12.4 1.0 1.4 1 0 0 1 1 1 0 HTH domain MotA_activ PF09114.5 gi|410670920|ref|YP_006923291.1| - 0.11 12.2 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Transcription factor MotA, activation domain DUF1724 PF08350.5 gi|410670921|ref|YP_006923292.1| - 6e-21 73.7 0.1 1.4e-20 72.5 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HxlR PF01638.12 gi|410670921|ref|YP_006923292.1| - 0.081 12.5 0.1 0.28 10.8 0.0 1.9 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_45 PF14947.1 gi|410670921|ref|YP_006923292.1| - 0.085 12.6 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix HisKA_2 PF07568.7 gi|410670922|ref|YP_006923293.1| - 9.7e-31 105.4 2.9 9.7e-31 105.4 2.0 2.5 2 0 0 2 2 2 1 Histidine kinase PAS_3 PF08447.6 gi|410670922|ref|YP_006923293.1| - 1.4e-16 60.3 0.9 3.5e-15 55.8 0.4 2.6 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|410670922|ref|YP_006923293.1| - 7.9e-14 51.8 0.4 8.3e-09 35.7 0.0 3.1 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.21 gi|410670922|ref|YP_006923293.1| - 1.5e-12 47.2 0.1 3.5e-12 46.0 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|410670922|ref|YP_006923293.1| - 4.5e-12 45.9 2.1 6e-05 23.1 0.1 3.6 3 1 1 4 4 4 2 HAMP domain Cache_1 PF02743.13 gi|410670922|ref|YP_006923293.1| - 6.1e-12 44.9 0.1 2.3e-11 43.0 0.1 2.0 1 0 0 1 1 1 1 Cache domain PAS PF00989.19 gi|410670922|ref|YP_006923293.1| - 2.1e-07 30.6 0.0 0.033 13.9 0.0 2.9 2 0 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.1 gi|410670922|ref|YP_006923293.1| - 1.2e-06 28.2 0.0 2.9e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|410670922|ref|YP_006923293.1| - 2.6e-05 23.9 0.0 8.4e-05 22.2 0.0 1.9 1 0 0 1 1 1 1 PAS domain HWE_HK PF07536.9 gi|410670922|ref|YP_006923293.1| - 3.2e-05 24.2 0.2 0.00012 22.4 0.2 2.1 1 0 0 1 1 1 1 HWE histidine kinase PAS_4 PF08448.5 gi|410670922|ref|YP_006923293.1| - 0.0002 21.3 0.0 0.43 10.6 0.0 2.5 2 0 0 2 2 2 2 PAS fold Response_reg PF00072.19 gi|410670923|ref|YP_006923294.1| - 1.7e-22 79.5 0.0 2e-22 79.3 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain tRNA-synt_2b PF00587.20 gi|410670925|ref|YP_006923296.1| - 1.8e-12 47.1 0.0 2.9e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.15 gi|410670925|ref|YP_006923296.1| - 1.3e-11 44.1 0.0 1e-07 31.4 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|410670925|ref|YP_006923296.1| - 7.4e-11 41.4 0.2 5.4e-08 31.9 0.1 3.2 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_His PF13393.1 gi|410670925|ref|YP_006923296.1| - 0.00018 20.6 0.0 0.00033 19.8 0.0 1.4 1 0 0 1 1 1 1 Histidyl-tRNA synthetase Radical_SAM PF04055.16 gi|410670926|ref|YP_006923297.1| - 1.8e-12 47.7 0.1 2.2e-11 44.2 0.1 2.3 2 0 0 2 2 2 1 Radical SAM superfamily BATS PF06968.8 gi|410670926|ref|YP_006923297.1| - 3.2e-06 26.9 0.2 3.9e-05 23.4 0.1 2.3 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain Fer4_12 PF13353.1 gi|410670926|ref|YP_006923297.1| - 8.2e-06 25.9 0.0 1.6e-05 25.0 0.0 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|410670926|ref|YP_006923297.1| - 0.0002 21.3 0.0 0.00035 20.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain His_biosynth PF00977.16 gi|410670926|ref|YP_006923297.1| - 0.0033 16.7 0.0 0.006 15.8 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein ATP-grasp_4 PF13535.1 gi|410670927|ref|YP_006923298.1| - 9.1e-14 51.5 0.1 5.5e-13 49.0 0.0 2.2 3 0 0 3 3 3 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|410670927|ref|YP_006923298.1| - 3.5e-07 30.2 0.0 6.7e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Ins134_P3_kin PF05770.6 gi|410670927|ref|YP_006923298.1| - 0.0093 15.0 0.0 0.047 12.6 0.0 2.1 2 1 1 3 3 3 1 Inositol 1, 3, 4-trisphosphate 5/6-kinase Dala_Dala_lig_C PF07478.8 gi|410670927|ref|YP_006923298.1| - 0.032 13.6 0.1 0.089 12.1 0.1 1.6 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus IF3_N PF05198.11 gi|410670927|ref|YP_006923298.1| - 0.047 13.6 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 Translation initiation factor IF-3, N-terminal domain GARS_A PF01071.14 gi|410670927|ref|YP_006923298.1| - 0.058 12.9 0.1 2.5 7.6 0.1 2.8 3 0 0 3 3 3 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GIDA PF01134.17 gi|410670927|ref|YP_006923298.1| - 0.07 11.9 0.0 0.096 11.5 0.0 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|410670927|ref|YP_006923298.1| - 0.091 13.1 0.0 0.23 11.9 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|410670927|ref|YP_006923298.1| - 0.15 11.0 0.0 0.33 9.9 0.0 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|410670928|ref|YP_006923299.1| - 3.4e-05 24.0 0.0 0.00012 22.3 0.0 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|410670928|ref|YP_006923299.1| - 0.00016 21.5 0.0 0.00043 20.1 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|410670928|ref|YP_006923299.1| - 0.00027 20.1 0.0 0.00039 19.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|410670928|ref|YP_006923299.1| - 0.0003 20.4 0.0 0.00049 19.8 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|410670928|ref|YP_006923299.1| - 0.0091 15.9 0.0 0.019 14.9 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.11 gi|410670928|ref|YP_006923299.1| - 0.017 14.5 0.0 0.033 13.6 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ELFV_dehydrog PF00208.16 gi|410670928|ref|YP_006923299.1| - 0.023 14.2 0.0 0.039 13.5 0.0 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IlvN PF07991.7 gi|410670928|ref|YP_006923299.1| - 0.056 12.8 0.0 0.12 11.6 0.0 1.6 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|410670928|ref|YP_006923299.1| - 0.058 13.8 0.0 0.16 12.4 0.0 1.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|410670928|ref|YP_006923299.1| - 0.085 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.19 gi|410670928|ref|YP_006923299.1| - 0.12 11.2 0.0 0.18 10.6 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Shikimate_DH PF01488.15 gi|410670928|ref|YP_006923299.1| - 0.12 12.4 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|410670928|ref|YP_006923299.1| - 0.15 11.8 0.0 2.9 7.6 0.0 2.2 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF4445 PF14574.1 gi|410670929|ref|YP_006923300.1| - 2.8e-110 368.4 5.5 4.5e-110 367.7 3.8 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4_6 PF12837.2 gi|410670929|ref|YP_006923300.1| - 1.9e-09 36.9 11.8 4.4e-06 26.3 1.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|410670929|ref|YP_006923300.1| - 3.8e-08 32.5 8.9 6.2e-05 22.4 1.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|410670929|ref|YP_006923300.1| - 3.9e-08 33.4 4.7 8.4e-08 32.3 3.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410670929|ref|YP_006923300.1| - 2.6e-07 30.9 9.1 5.5e-07 29.8 6.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410670929|ref|YP_006923300.1| - 1.7e-06 27.7 10.3 5.6e-06 26.0 7.2 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410670929|ref|YP_006923300.1| - 4.5e-06 26.2 11.8 0.0025 17.6 1.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|410670929|ref|YP_006923300.1| - 8.4e-06 25.5 10.0 1.6e-05 24.6 6.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410670929|ref|YP_006923300.1| - 0.00045 20.5 4.2 0.014 15.6 0.1 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|410670929|ref|YP_006923300.1| - 0.0012 18.8 10.8 0.026 14.5 1.8 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410670929|ref|YP_006923300.1| - 0.0018 19.0 11.2 0.28 11.9 1.4 2.7 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|410670929|ref|YP_006923300.1| - 0.0034 17.6 15.1 0.16 12.3 2.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|410670929|ref|YP_006923300.1| - 0.013 16.0 15.7 0.38 11.4 3.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|410670929|ref|YP_006923300.1| - 0.042 14.2 11.5 1.5 9.3 0.7 2.7 2 1 0 2 2 2 0 4Fe-4S dicluster domain IL33 PF15095.1 gi|410670929|ref|YP_006923300.1| - 0.084 12.3 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Interleukin 33 MHC_II_alpha PF00993.15 gi|410670929|ref|YP_006923300.1| - 0.17 11.5 0.0 0.6 9.7 0.0 1.9 2 0 0 2 2 2 0 Class II histocompatibility antigen, alpha domain DNA_pol_E_B PF04042.11 gi|410670930|ref|YP_006923301.1| - 6.5e-16 58.2 0.0 9.6e-16 57.6 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|410670930|ref|YP_006923301.1| - 5.3e-13 49.0 0.0 9.5e-13 48.2 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|410670930|ref|YP_006923301.1| - 8.4e-07 28.5 1.1 2.5e-06 27.0 0.8 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|410670930|ref|YP_006923301.1| - 0.00052 19.8 0.1 0.0016 18.2 0.0 1.9 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Peptidase_S24 PF00717.18 gi|410670931|ref|YP_006923302.1| - 0.0027 17.2 0.1 0.0046 16.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like Cdc6_C PF09079.6 gi|410670932|ref|YP_006923303.1| - 1.8e-26 91.6 0.4 5.3e-26 90.1 0.3 1.9 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|410670932|ref|YP_006923303.1| - 7.4e-13 48.7 0.0 1.5e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|410670932|ref|YP_006923303.1| - 1.4e-11 44.6 0.2 6e-11 42.6 0.0 2.0 1 1 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|410670932|ref|YP_006923303.1| - 1.3e-08 34.8 0.1 2.4e-08 34.0 0.1 1.5 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|410670932|ref|YP_006923303.1| - 1.8e-08 34.6 0.1 3.6e-08 33.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|410670932|ref|YP_006923303.1| - 2.7e-05 23.6 0.3 6.8e-05 22.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain DEAD PF00270.24 gi|410670932|ref|YP_006923303.1| - 0.00078 18.9 2.0 1 8.8 0.0 3.1 3 0 0 3 3 3 2 DEAD/DEAH box helicase Bac_DnaA PF00308.13 gi|410670932|ref|YP_006923303.1| - 0.00088 18.9 0.3 0.0094 15.6 0.2 2.1 1 1 0 1 1 1 1 Bacterial dnaA protein DUF2075 PF09848.4 gi|410670932|ref|YP_006923303.1| - 0.00095 18.2 0.0 0.0014 17.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.8 gi|410670932|ref|YP_006923303.1| - 0.00098 18.1 0.5 0.0041 16.0 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|410670932|ref|YP_006923303.1| - 0.0013 18.1 0.0 0.0027 17.1 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain KAP_NTPase PF07693.9 gi|410670932|ref|YP_006923303.1| - 0.0024 16.9 2.2 0.22 10.4 0.5 2.2 1 1 1 2 2 2 2 KAP family P-loop domain NACHT PF05729.7 gi|410670932|ref|YP_006923303.1| - 0.0037 16.9 0.0 0.0065 16.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain T2SE PF00437.15 gi|410670932|ref|YP_006923303.1| - 0.011 14.6 0.0 0.024 13.5 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein ResIII PF04851.10 gi|410670932|ref|YP_006923303.1| - 0.024 14.4 0.0 0.061 13.1 0.0 1.7 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_24 PF13479.1 gi|410670932|ref|YP_006923303.1| - 0.037 13.6 0.1 0.089 12.3 0.1 1.6 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|410670932|ref|YP_006923303.1| - 0.05 13.0 0.4 0.22 10.9 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|410670932|ref|YP_006923303.1| - 0.063 14.0 0.6 0.16 12.7 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_2 PF07724.9 gi|410670932|ref|YP_006923303.1| - 0.067 13.1 1.7 0.66 9.8 1.2 2.3 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_18 PF13238.1 gi|410670932|ref|YP_006923303.1| - 0.079 13.2 2.0 0.13 12.6 0.4 2.1 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|410670932|ref|YP_006923303.1| - 0.13 12.0 0.1 0.29 10.9 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain Pyridoxal_deC PF00282.14 gi|410670934|ref|YP_006923305.1| - 1.3e-31 109.3 0.0 1.8e-31 108.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|410670934|ref|YP_006923305.1| - 5.7e-06 25.3 0.0 1.8e-05 23.7 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|410670934|ref|YP_006923305.1| - 0.016 14.3 0.2 0.029 13.5 0.0 1.4 2 0 0 2 2 2 0 Beta-eliminating lyase CBS PF00571.23 gi|410670935|ref|YP_006923306.1| - 9e-31 105.4 1.7 4.7e-16 58.2 0.1 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|410670935|ref|YP_006923306.1| - 2e-19 69.3 12.5 3.1e-15 55.6 4.6 2.3 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|410670935|ref|YP_006923306.1| - 0.017 14.4 6.4 0.017 14.4 3.5 1.7 1 1 0 1 1 1 0 Peptidase M50B-like MRP-S32 PF10210.4 gi|410670935|ref|YP_006923306.1| - 0.18 12.1 0.0 0.29 11.4 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S32 TraB PF01963.12 gi|410670936|ref|YP_006923307.1| - 1.4e-53 181.9 0.0 1.9e-53 181.5 0.0 1.1 1 0 0 1 1 1 1 TraB family DUF399 PF04187.8 gi|410670936|ref|YP_006923307.1| - 0.0043 16.5 0.0 0.011 15.2 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF399 Transglut_core PF01841.14 gi|410670937|ref|YP_006923308.1| - 5.7e-14 52.3 0.0 8e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily FTR_C PF02741.10 gi|410670938|ref|YP_006923309.1| - 4.5e-66 221.2 1.0 4.5e-66 221.2 0.7 1.4 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.13 gi|410670938|ref|YP_006923309.1| - 2.1e-65 218.8 0.1 3.8e-65 217.9 0.0 1.4 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase Glucos_trans_II PF14264.1 gi|410670939|ref|YP_006923310.1| - 1.1 8.1 11.6 2.4 7.1 8.0 1.5 1 0 0 1 1 1 0 Glucosyl transferase GtrII zf-CSL PF05207.8 gi|410670940|ref|YP_006923311.1| - 6.5e-05 22.3 0.0 0.0001 21.7 0.0 1.3 1 0 0 1 1 1 1 CSL zinc finger zf-H2C2_2 PF13465.1 gi|410670940|ref|YP_006923311.1| - 0.00011 22.2 2.4 0.15 12.4 0.1 2.2 2 0 0 2 2 2 2 Zinc-finger double domain zf-ribbon_3 PF13248.1 gi|410670940|ref|YP_006923311.1| - 0.00018 20.5 1.6 0.11 11.6 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|410670940|ref|YP_006923311.1| - 0.00019 20.6 0.5 0.077 12.3 0.0 2.4 2 0 0 2 2 2 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|410670940|ref|YP_006923311.1| - 0.00024 20.9 0.4 0.062 13.2 0.0 2.2 2 0 0 2 2 2 1 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|410670940|ref|YP_006923311.1| - 0.0013 18.2 3.3 0.011 15.3 2.3 2.1 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|410670940|ref|YP_006923311.1| - 0.0016 18.0 3.2 0.012 15.3 2.2 2.1 1 1 0 1 1 1 1 zinc-ribbon domain RRN7 PF11781.3 gi|410670940|ref|YP_006923311.1| - 0.0042 16.5 0.3 0.47 9.9 0.0 2.2 2 0 0 2 2 2 1 RNA polymerase I-specific transcription initiation factor Rrn7 UPF0547 PF10571.4 gi|410670940|ref|YP_006923311.1| - 0.0094 15.6 7.3 0.13 12.0 0.3 2.3 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 Cys_rich_CPXG PF14255.1 gi|410670940|ref|YP_006923311.1| - 0.013 15.3 0.1 0.24 11.2 0.0 2.1 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-HIT PF04438.11 gi|410670940|ref|YP_006923311.1| - 0.022 14.3 4.8 0.26 10.9 0.1 2.2 2 0 0 2 2 2 0 HIT zinc finger Zn_Tnp_IS1595 PF12760.2 gi|410670940|ref|YP_006923311.1| - 0.024 14.4 2.1 0.1 12.4 1.7 1.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF2296 PF10058.4 gi|410670940|ref|YP_006923311.1| - 0.031 14.0 0.9 0.23 11.2 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) DUF1610 PF07754.6 gi|410670940|ref|YP_006923311.1| - 0.035 14.2 1.5 0.035 14.2 1.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) CpXC PF14353.1 gi|410670940|ref|YP_006923311.1| - 0.036 14.0 0.2 0.93 9.4 0.0 2.1 2 0 0 2 2 2 0 CpXC protein zf-ISL3 PF14690.1 gi|410670940|ref|YP_006923311.1| - 0.04 13.9 2.0 2.9 8.0 0.0 2.5 3 0 0 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF3429 PF11911.3 gi|410670940|ref|YP_006923311.1| - 0.04 13.9 0.4 0.052 13.5 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3429) DZR PF12773.2 gi|410670940|ref|YP_006923311.1| - 0.045 13.5 1.3 0.11 12.3 0.9 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-LITAF-like PF10601.4 gi|410670940|ref|YP_006923311.1| - 0.047 13.5 0.6 2.8 7.8 0.1 2.4 2 1 0 2 2 2 0 LITAF-like zinc ribbon domain Sgf11 PF08209.6 gi|410670940|ref|YP_006923311.1| - 0.069 12.4 5.7 0.57 9.5 0.5 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF329 PF03884.9 gi|410670940|ref|YP_006923311.1| - 0.07 12.6 0.4 9 5.9 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF329) Ogr_Delta PF04606.7 gi|410670940|ref|YP_006923311.1| - 0.075 12.7 0.4 5.6 6.7 0.0 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DUF3797 PF12677.2 gi|410670940|ref|YP_006923311.1| - 0.08 12.5 1.9 2.8 7.6 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) A2L_zn_ribbon PF08792.5 gi|410670940|ref|YP_006923311.1| - 0.085 12.3 0.8 2.4 7.7 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Rubredoxin PF00301.15 gi|410670940|ref|YP_006923311.1| - 0.095 12.5 0.7 8.4 6.3 0.1 3.0 3 0 0 3 3 3 0 Rubredoxin HypA PF01155.14 gi|410670940|ref|YP_006923311.1| - 0.11 12.2 0.1 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2H2 PF00096.21 gi|410670940|ref|YP_006923311.1| - 0.12 12.7 4.2 1 9.8 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_2 PF13240.1 gi|410670940|ref|YP_006923311.1| - 0.16 11.4 5.2 0.98 8.9 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_6 PF13912.1 gi|410670940|ref|YP_006923311.1| - 0.17 11.8 1.8 4.2 7.4 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger TFIIS_C PF01096.13 gi|410670940|ref|YP_006923311.1| - 0.2 11.3 2.5 8.1 6.1 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-RING_4 PF14570.1 gi|410670940|ref|YP_006923311.1| - 0.22 11.1 1.5 5.1 6.7 0.0 2.2 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain zf-Di19 PF05605.7 gi|410670940|ref|YP_006923311.1| - 0.28 11.3 1.1 1.4 9.0 0.7 1.9 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Cys_rich_KTR PF14205.1 gi|410670940|ref|YP_006923311.1| - 0.52 9.8 2.9 2.6 7.5 0.4 2.2 2 0 0 2 2 2 0 Cysteine-rich KTR HATPase_c PF02518.21 gi|410670941|ref|YP_006923312.1| - 2.2e-22 78.8 0.0 5.3e-22 77.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.21 gi|410670941|ref|YP_006923312.1| - 1.5e-10 41.3 0.0 2.4e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|410670941|ref|YP_006923312.1| - 1.3e-09 38.2 0.0 3.5e-09 36.8 0.0 1.7 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.1 gi|410670941|ref|YP_006923312.1| - 2.2e-08 34.6 0.0 4.1e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|410670941|ref|YP_006923312.1| - 9.8e-05 22.1 0.0 0.00023 20.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|410670941|ref|YP_006923312.1| - 0.0081 15.8 0.0 0.024 14.3 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|410670941|ref|YP_006923312.1| - 0.037 13.6 0.0 0.089 12.4 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|410670941|ref|YP_006923312.1| - 0.077 13.0 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 PAS fold HisKA PF00512.20 gi|410670941|ref|YP_006923312.1| - 0.1 12.5 2.4 0.14 12.1 0.0 2.5 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain Ion_trans PF00520.26 gi|410670942|ref|YP_006923313.1| - 5.9e-24 84.4 19.0 5.9e-24 84.4 13.2 1.9 2 0 0 2 2 2 1 Ion transport protein Ion_trans_2 PF07885.11 gi|410670942|ref|YP_006923313.1| - 2.5e-13 49.5 9.9 2.5e-13 49.5 6.9 2.5 2 1 0 2 2 2 1 Ion channel PKD_channel PF08016.7 gi|410670942|ref|YP_006923313.1| - 0.034 12.5 14.4 0.017 13.6 3.2 2.2 1 1 1 2 2 2 0 Polycystin cation channel DZR PF12773.2 gi|410670942|ref|YP_006923313.1| - 0.058 13.2 0.9 0.094 12.5 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|410670942|ref|YP_006923313.1| - 0.089 12.0 1.0 0.13 11.5 0.7 1.3 1 0 0 1 1 1 0 zinc-ribbon domain WBP-1 PF11669.3 gi|410670942|ref|YP_006923313.1| - 0.14 12.2 1.8 0.31 11.1 0.7 1.9 1 1 0 1 1 1 0 WW domain-binding protein 1 IMS PF00817.15 gi|410670943|ref|YP_006923314.1| - 3e-41 140.6 0.2 5.3e-41 139.8 0.2 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|410670943|ref|YP_006923314.1| - 1.2e-13 51.1 0.2 2.2e-13 50.2 0.2 1.4 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|410670943|ref|YP_006923314.1| - 2.6e-11 42.8 0.1 6e-11 41.7 0.1 1.7 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.1 gi|410670943|ref|YP_006923314.1| - 2.5e-05 24.3 0.0 5.4e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|410670943|ref|YP_006923314.1| - 0.00026 20.4 0.0 0.00063 19.2 0.0 1.6 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|410670943|ref|YP_006923314.1| - 0.016 15.1 0.0 0.043 13.7 0.0 1.7 1 0 0 1 1 1 0 Pathogenicity locus PALP PF00291.20 gi|410670944|ref|YP_006923315.1| - 2.3e-55 187.9 0.0 2.6e-55 187.8 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.21 gi|410670944|ref|YP_006923315.1| - 0.041 13.4 0.1 0.74 9.3 0.0 2.7 2 1 0 2 2 2 0 Zinc-binding dehydrogenase Abhydrolase_3 PF07859.8 gi|410670944|ref|YP_006923315.1| - 0.12 11.9 0.0 1.3 8.5 0.0 2.1 2 0 0 2 2 2 0 alpha/beta hydrolase fold Hexapep PF00132.19 gi|410670945|ref|YP_006923316.1| - 1.1e-10 40.5 10.1 0.00029 20.2 1.0 3.9 2 2 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|410670945|ref|YP_006923316.1| - 1.3e-06 27.8 7.4 0.024 14.2 0.4 3.7 3 0 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.9 gi|410670945|ref|YP_006923316.1| - 0.016 15.4 0.0 0.035 14.3 0.0 1.6 1 1 0 1 1 1 0 Serine acetyltransferase, N-terminal Methyltransf_12 PF08242.7 gi|410670947|ref|YP_006923318.1| - 8.9e-16 58.1 0.0 1.5e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410670947|ref|YP_006923318.1| - 2.4e-13 50.6 0.0 4.8e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|410670947|ref|YP_006923318.1| - 1.4e-10 41.5 0.0 2.8e-10 40.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|410670947|ref|YP_006923318.1| - 1.8e-09 37.5 0.0 2.9e-09 36.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|410670947|ref|YP_006923318.1| - 8.6e-09 35.6 0.0 1.8e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|410670947|ref|YP_006923318.1| - 1.4e-07 30.8 0.0 1.7e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|410670947|ref|YP_006923318.1| - 8.2e-07 28.7 0.0 1.3e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|410670947|ref|YP_006923318.1| - 0.0073 15.3 0.0 0.018 14.0 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase MTS PF05175.9 gi|410670947|ref|YP_006923318.1| - 0.026 13.9 0.0 0.036 13.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|410670947|ref|YP_006923318.1| - 0.05 13.6 0.0 2.8 7.9 0.0 2.4 1 1 0 1 1 1 0 Methyltransferase domain DUF4346 PF14251.1 gi|410670949|ref|YP_006923320.1| - 1.3e-13 50.7 0.2 4.4e-08 32.8 0.1 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4346) Usp PF00582.21 gi|410670951|ref|YP_006923322.1| - 4.4e-37 127.3 0.6 5e-37 127.2 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF3253 PF11625.3 gi|410670951|ref|YP_006923322.1| - 0.0086 15.9 0.1 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3253) DXP_reductoisom PF02670.11 gi|410670951|ref|YP_006923322.1| - 0.072 13.6 0.3 0.11 12.9 0.1 1.6 2 1 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase UPF0182 PF03699.8 gi|410670952|ref|YP_006923323.1| - 5.9e-277 920.6 14.0 6.8e-277 920.4 9.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0182) FAM209 PF15206.1 gi|410670954|ref|YP_006923325.1| - 0.057 13.2 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 FAM209 family Lactamase_B_2 PF12706.2 gi|410670955|ref|YP_006923326.1| - 1e-34 119.7 0.2 1.4e-34 119.3 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|410670955|ref|YP_006923326.1| - 1.1e-15 57.7 0.1 1.4e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|410670955|ref|YP_006923326.1| - 9.6e-06 25.3 1.3 1.9e-05 24.3 0.6 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily RDD PF06271.7 gi|410670957|ref|YP_006923328.1| - 2.9e-24 85.5 6.4 3.3e-24 85.3 4.4 1.0 1 0 0 1 1 1 1 RDD family DUF1516 PF07457.6 gi|410670957|ref|YP_006923328.1| - 0.38 10.8 4.6 0.18 11.9 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1516) FUSC_2 PF13515.1 gi|410670957|ref|YP_006923328.1| - 3.8 7.4 7.6 13 5.7 5.1 1.8 1 1 0 1 1 1 0 Fusaric acid resistance protein-like HTH_29 PF13551.1 gi|410670959|ref|YP_006923330.1| - 7.1e-17 61.5 0.0 1.1e-16 60.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410670959|ref|YP_006923330.1| - 1e-10 42.2 0.3 2.2e-10 41.2 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|410670959|ref|YP_006923330.1| - 5.9e-09 35.3 0.4 1.2e-08 34.3 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|410670959|ref|YP_006923330.1| - 8.3e-07 28.4 0.1 3.1e-06 26.6 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|410670959|ref|YP_006923330.1| - 8.2e-06 25.7 0.0 2e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_21 PF13276.1 gi|410670959|ref|YP_006923330.1| - 0.031 14.2 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 HTH-like domain DDE_3 PF13358.1 gi|410670960|ref|YP_006923331.1| - 2e-23 82.7 0.1 2.8e-23 82.2 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|410670960|ref|YP_006923331.1| - 1.2e-09 38.3 0.0 2.1e-09 37.4 0.0 1.4 2 0 0 2 2 2 1 Integrase core domain DDE_1 PF03184.14 gi|410670960|ref|YP_006923331.1| - 2.2e-08 33.5 0.1 2.5e-08 33.3 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|410670960|ref|YP_006923331.1| - 0.026 13.2 0.0 0.029 13.1 0.0 1.2 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain Ribosomal_S2 PF00318.15 gi|410670960|ref|YP_006923331.1| - 0.032 13.4 2.0 0.36 10.0 1.4 2.0 1 1 0 1 1 1 0 Ribosomal protein S2 DUF3800 PF12686.2 gi|410670960|ref|YP_006923331.1| - 0.061 12.9 0.1 0.067 12.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3800) DUF3592 PF12158.3 gi|410670961|ref|YP_006923332.1| - 0.0065 16.2 0.3 0.012 15.4 0.2 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3592) Wzy_C PF04932.10 gi|410670961|ref|YP_006923332.1| - 0.018 14.8 0.2 0.028 14.2 0.1 1.3 1 0 0 1 1 1 0 O-Antigen ligase DUF772 PF05598.6 gi|410670962|ref|YP_006923333.1| - 1.2e-20 73.1 0.1 4.4e-20 71.3 0.0 1.8 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|410670962|ref|YP_006923333.1| - 2.9e-12 46.5 0.8 1.4e-10 41.0 0.6 2.2 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|410670962|ref|YP_006923333.1| - 0.00028 20.5 0.1 0.0005 19.7 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|410670962|ref|YP_006923333.1| - 0.00041 20.1 0.1 0.00075 19.2 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|410670962|ref|YP_006923333.1| - 0.022 14.7 0.1 0.043 13.8 0.1 1.4 1 0 0 1 1 1 0 Transposase DDE domain Aldo_ket_red PF00248.16 gi|410670964|ref|YP_006923335.1| - 6.1e-43 146.6 0.0 7.4e-43 146.3 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|410670964|ref|YP_006923335.1| - 4.6e-12 46.1 5.7 9.6e-12 45.0 3.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|410670964|ref|YP_006923335.1| - 4.7e-11 42.9 0.9 1.4e-05 25.4 0.0 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410670964|ref|YP_006923335.1| - 2e-10 40.7 8.4 3.8e-10 39.8 5.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|410670964|ref|YP_006923335.1| - 6.3e-08 32.5 6.6 6.3e-08 32.5 4.6 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|410670964|ref|YP_006923335.1| - 4.3e-05 22.9 11.1 0.0015 18.0 1.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|410670964|ref|YP_006923335.1| - 0.00017 21.3 12.8 0.006 16.3 10.0 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|410670964|ref|YP_006923335.1| - 0.00032 20.2 1.6 0.0051 16.4 0.0 2.3 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|410670964|ref|YP_006923335.1| - 0.00046 20.8 5.7 0.12 13.1 0.5 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|410670964|ref|YP_006923335.1| - 0.0014 18.4 7.8 0.29 11.0 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410670964|ref|YP_006923335.1| - 0.0027 17.4 1.4 0.0027 17.4 0.9 2.6 2 1 0 2 2 2 1 4Fe-4S binding domain Med27 PF11571.3 gi|410670964|ref|YP_006923335.1| - 0.012 15.7 0.9 0.61 10.2 0.1 2.3 2 0 0 2 2 2 0 Mediator complex subunit 27 Fer4_2 PF12797.2 gi|410670964|ref|YP_006923335.1| - 0.012 15.4 13.1 0.046 13.6 1.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|410670964|ref|YP_006923335.1| - 0.1 12.9 14.6 0.88 9.9 10.2 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410670964|ref|YP_006923335.1| - 0.11 12.9 15.2 0.29 11.5 2.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DHDPS PF00701.17 gi|410670964|ref|YP_006923335.1| - 0.18 10.3 0.0 0.33 9.4 0.0 1.3 1 0 0 1 1 1 0 Dihydrodipicolinate synthetase family Fer4_3 PF12798.2 gi|410670964|ref|YP_006923335.1| - 0.38 11.4 14.5 0.3 11.7 3.4 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|410670964|ref|YP_006923335.1| - 0.39 11.1 0.2 0.39 11.1 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Acetyltransf_7 PF13508.1 gi|410670965|ref|YP_006923336.1| - 2.9e-14 52.9 0.4 4.1e-14 52.5 0.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|410670965|ref|YP_006923336.1| - 2.2e-12 46.8 0.1 3.3e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|410670965|ref|YP_006923336.1| - 1.4e-11 44.5 0.0 1.6e-11 44.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|410670965|ref|YP_006923336.1| - 4.8e-09 36.1 0.1 1.2e-08 34.8 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|410670965|ref|YP_006923336.1| - 0.0018 18.4 0.0 0.0021 18.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|410670965|ref|YP_006923336.1| - 0.0044 16.7 0.0 0.0073 16.0 0.0 1.3 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|410670965|ref|YP_006923336.1| - 0.017 14.9 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF1582 PF07621.6 gi|410670965|ref|YP_006923336.1| - 0.032 14.2 0.0 0.056 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1582) Acetyltransf_4 PF13420.1 gi|410670965|ref|YP_006923336.1| - 0.074 13.0 0.0 0.099 12.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Bt_P21 PF05560.6 gi|410670965|ref|YP_006923336.1| - 0.093 12.1 0.1 0.1 11.9 0.1 1.1 1 0 0 1 1 1 0 Bacillus thuringiensis P21 molecular chaperone protein MOZ_SAS PF01853.13 gi|410670965|ref|YP_006923336.1| - 0.099 11.8 0.1 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 MOZ/SAS family Sulfate_transp PF00916.15 gi|410670966|ref|YP_006923337.1| - 3e-65 220.0 15.9 3e-65 220.0 11.0 2.3 1 1 1 2 2 2 1 Sulfate transporter family Sulfate_tra_GLY PF13792.1 gi|410670966|ref|YP_006923337.1| - 5.4e-21 74.0 4.6 5.4e-21 74.0 3.2 3.4 5 0 0 5 5 5 1 Sulfate transporter N-terminal domain with GLY motif STAS PF01740.16 gi|410670966|ref|YP_006923337.1| - 1.5e-13 50.2 0.1 2.7e-13 49.3 0.1 1.4 1 0 0 1 1 1 1 STAS domain HhH-GPD PF00730.20 gi|410670967|ref|YP_006923338.1| - 1.6e-21 76.5 0.0 2.2e-21 76.1 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|410670967|ref|YP_006923338.1| - 2.2e-09 36.4 0.3 2.6e-08 33.0 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|410670967|ref|YP_006923338.1| - 1.9e-05 24.6 4.2 3.4e-05 23.8 2.9 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|410670967|ref|YP_006923338.1| - 0.0023 18.0 0.0 0.0052 16.9 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF3349 PF11829.3 gi|410670967|ref|YP_006923338.1| - 0.016 15.6 0.0 0.061 13.7 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3349) EVC2_like PF12297.3 gi|410670967|ref|YP_006923338.1| - 0.14 10.7 0.1 0.23 10.0 0.1 1.2 1 0 0 1 1 1 0 Ellis van Creveld protein 2 like protein TPP_enzyme_C PF02775.16 gi|410670968|ref|YP_006923339.1| - 1.6e-28 99.2 0.1 2.5e-28 98.5 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|410670969|ref|YP_006923340.1| - 4.1e-66 222.7 0.1 5.4e-66 222.3 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|410670969|ref|YP_006923340.1| - 3.1e-07 30.3 0.2 6.5e-07 29.3 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain KH_5 PF13184.1 gi|410670969|ref|YP_006923340.1| - 2 8.3 4.9 15 5.4 1.3 2.7 2 1 0 2 2 2 0 NusA-like KH domain Fer4 PF00037.22 gi|410670970|ref|YP_006923341.1| - 4e-14 51.5 12.7 6.4e-08 31.8 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|410670970|ref|YP_006923341.1| - 5.8e-14 52.2 29.3 3.9e-08 33.5 6.9 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410670970|ref|YP_006923341.1| - 1.5e-11 43.9 9.8 2.2e-11 43.3 6.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410670970|ref|YP_006923341.1| - 5.5e-11 42.1 6.2 8.3e-11 41.5 4.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410670970|ref|YP_006923341.1| - 3.1e-10 39.3 10.6 1.9e-05 24.3 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|410670970|ref|YP_006923341.1| - 7e-10 38.3 15.4 5.4e-06 26.0 1.7 2.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|410670970|ref|YP_006923341.1| - 2.5e-08 34.0 10.6 3.6e-08 33.5 6.8 1.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410670970|ref|YP_006923341.1| - 6.4e-06 26.8 11.5 0.00069 20.3 1.8 2.3 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|410670970|ref|YP_006923341.1| - 2.9e-05 24.3 7.3 0.026 14.8 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|410670970|ref|YP_006923341.1| - 0.00014 21.8 12.0 0.0048 16.8 8.6 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|410670970|ref|YP_006923341.1| - 0.0002 21.8 11.2 0.076 13.5 1.2 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|410670970|ref|YP_006923341.1| - 0.00025 21.1 13.0 0.025 14.8 0.9 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|410670970|ref|YP_006923341.1| - 0.00095 19.5 11.8 0.0065 16.8 0.9 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|410670970|ref|YP_006923341.1| - 0.023 15.2 15.0 0.51 11.0 3.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|410670970|ref|YP_006923341.1| - 0.04 13.8 3.7 0.058 13.2 2.6 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|410670970|ref|YP_006923341.1| - 0.049 14.0 13.1 0.6 10.5 1.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR PF01558.13 gi|410670971|ref|YP_006923342.1| - 1.6e-37 129.0 0.1 1.9e-37 128.8 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Dus PF01207.12 gi|410670972|ref|YP_006923343.1| - 4e-76 255.8 0.0 4.9e-76 255.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) Oxidored_FMN PF00724.15 gi|410670972|ref|YP_006923343.1| - 2.2e-05 23.6 0.0 3.4e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family SOR_SNZ PF01680.12 gi|410670972|ref|YP_006923343.1| - 0.016 14.8 1.6 2.9 7.4 0.0 2.8 2 1 1 3 3 3 0 SOR/SNZ family His_biosynth PF00977.16 gi|410670972|ref|YP_006923343.1| - 0.021 14.1 0.1 0.092 11.9 0.0 1.8 1 1 1 2 2 2 0 Histidine biosynthesis protein AAA_18 PF13238.1 gi|410670973|ref|YP_006923344.1| - 3.3e-11 43.6 0.1 4.5e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|410670973|ref|YP_006923344.1| - 8e-09 36.3 0.0 1.3e-08 35.7 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|410670973|ref|YP_006923344.1| - 1.4e-05 24.9 0.0 2e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain CoaE PF01121.15 gi|410670973|ref|YP_006923344.1| - 0.002 17.5 0.1 0.12 11.8 0.0 2.3 2 0 0 2 2 2 2 Dephospho-CoA kinase RNA_binding PF01877.12 gi|410670974|ref|YP_006923345.1| - 1.5e-20 73.3 0.2 1.8e-20 73.1 0.1 1.1 1 0 0 1 1 1 1 RNA binding AP_endonuc_2 PF01261.19 gi|410670975|ref|YP_006923346.1| - 4.3e-35 120.9 0.0 5e-35 120.7 0.0 1.0 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel CsbD PF05532.7 gi|410670976|ref|YP_006923347.1| - 7.6e-17 60.7 6.6 8.5e-17 60.5 4.6 1.1 1 0 0 1 1 1 1 CsbD-like MT0933_antitox PF14013.1 gi|410670976|ref|YP_006923347.1| - 1.7 8.7 6.4 5.2 7.2 0.5 2.1 1 1 1 2 2 2 0 MT0933-like antitoxin protein Latarcin PF10279.4 gi|410670977|ref|YP_006923348.1| - 0.0024 18.0 0.7 0.0027 17.8 0.5 1.0 1 0 0 1 1 1 1 Latarcin precursor BLOC1_2 PF10046.4 gi|410670977|ref|YP_006923348.1| - 0.0061 16.6 0.1 0.007 16.4 0.0 1.1 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 PSK_trans_fac PF07704.6 gi|410670977|ref|YP_006923348.1| - 0.065 13.9 0.0 0.069 13.8 0.0 1.1 1 0 0 1 1 1 0 Rv0623-like transcription factor DUF4113 PF13438.1 gi|410670977|ref|YP_006923348.1| - 0.19 11.3 1.3 3.9 7.1 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4113) AAA_10 PF12846.2 gi|410670978|ref|YP_006923349.1| - 3.8e-25 88.9 0.0 1e-23 84.2 0.0 2.1 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|410670978|ref|YP_006923349.1| - 6.2e-11 42.5 0.0 2.2e-10 40.7 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|410670978|ref|YP_006923349.1| - 1.7e-10 39.9 0.0 4.5e-07 28.5 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|410670978|ref|YP_006923349.1| - 5.7e-07 29.2 0.0 0.029 13.8 0.0 2.2 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA PF00004.24 gi|410670978|ref|YP_006923349.1| - 4e-05 23.8 0.0 0.21 11.8 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|410670978|ref|YP_006923349.1| - 0.00012 22.1 0.0 0.0039 17.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.4 gi|410670978|ref|YP_006923349.1| - 0.00046 18.9 0.0 0.0019 16.9 0.0 1.8 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.10 gi|410670978|ref|YP_006923349.1| - 0.002 18.0 0.0 0.048 13.4 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit RNA_helicase PF00910.17 gi|410670978|ref|YP_006923349.1| - 0.0029 17.7 0.0 0.0063 16.6 0.0 1.6 1 0 0 1 1 1 1 RNA helicase Zot PF05707.7 gi|410670978|ref|YP_006923349.1| - 0.0063 15.9 0.0 0.019 14.4 0.0 1.7 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_16 PF13191.1 gi|410670978|ref|YP_006923349.1| - 0.0063 16.5 0.0 0.34 10.8 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain T2SE PF00437.15 gi|410670978|ref|YP_006923349.1| - 0.016 14.0 0.0 0.031 13.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DEAD PF00270.24 gi|410670978|ref|YP_006923349.1| - 0.042 13.3 0.0 3 7.2 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|410670978|ref|YP_006923349.1| - 0.1 11.5 0.0 0.37 9.7 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NurA PF09376.5 gi|410670979|ref|YP_006923350.1| - 2e-24 86.4 0.0 2.9e-24 85.9 0.0 1.2 1 0 0 1 1 1 1 NurA domain SSF PF00474.12 gi|410670980|ref|YP_006923351.1| - 6.5e-36 123.8 36.5 6.5e-36 123.8 25.3 1.6 2 0 0 2 2 2 1 Sodium:solute symporter family Beta-APP PF03494.8 gi|410670980|ref|YP_006923351.1| - 0.48 9.9 2.3 6.7 6.2 0.1 2.8 2 0 0 2 2 2 0 Beta-amyloid peptide (beta-APP) Phtf-FEM1B_bdg PF12129.3 gi|410670980|ref|YP_006923351.1| - 2.9 7.2 7.0 0.24 10.7 0.4 2.4 2 0 0 2 2 2 0 Male germ-cell putative homeodomain transcription factor DUF2613 PF11021.3 gi|410670980|ref|YP_006923351.1| - 8.7 6.1 14.2 1.5 8.5 0.1 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF2613) Glyoxalase_2 PF12681.2 gi|410670983|ref|YP_006923354.1| - 2.3e-18 66.7 0.0 2.6e-18 66.6 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|410670983|ref|YP_006923354.1| - 5.9e-13 48.9 0.0 6.7e-13 48.7 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Meth_synt_2 PF01717.13 gi|410670984|ref|YP_006923355.1| - 0.002 17.1 0.0 0.021 13.7 0.0 2.2 2 0 0 2 2 2 1 Cobalamin-independent synthase, Catalytic domain DUF95 PF01944.12 gi|410670986|ref|YP_006923356.1| - 1.9e-12 47.1 16.0 1.9e-12 47.1 11.1 2.2 2 1 0 2 2 2 1 Integral membrane protein DUF95 KaiC PF06745.8 gi|410670987|ref|YP_006923358.1| - 2e-46 157.9 0.0 2.9e-46 157.4 0.0 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|410670987|ref|YP_006923358.1| - 3.8e-09 36.2 0.0 4.2e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|410670987|ref|YP_006923358.1| - 0.00036 20.2 0.1 0.00066 19.3 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain DnaB_C PF03796.10 gi|410670987|ref|YP_006923358.1| - 0.00071 18.5 0.0 0.0031 16.4 0.0 1.9 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_22 PF13401.1 gi|410670987|ref|YP_006923358.1| - 0.0046 17.1 0.0 0.013 15.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|410670987|ref|YP_006923358.1| - 0.0062 14.9 0.1 0.042 12.1 0.1 1.9 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_33 PF13671.1 gi|410670987|ref|YP_006923358.1| - 0.0085 15.9 0.4 0.03 14.1 0.1 2.0 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|410670987|ref|YP_006923358.1| - 0.015 15.2 0.1 0.16 11.8 0.0 2.3 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|410670987|ref|YP_006923358.1| - 0.015 16.0 0.3 0.031 15.0 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|410670987|ref|YP_006923358.1| - 0.017 15.4 0.1 0.045 14.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|410670987|ref|YP_006923358.1| - 0.036 13.9 0.0 0.094 12.6 0.0 2.0 2 1 0 2 2 1 0 AAA domain DUF2608 PF11019.3 gi|410670987|ref|YP_006923358.1| - 0.056 12.4 0.1 0.12 11.3 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2608) Rad51 PF08423.6 gi|410670987|ref|YP_006923358.1| - 0.059 12.2 0.1 6.6 5.5 0.0 2.1 2 0 0 2 2 2 0 Rad51 cobW PF02492.14 gi|410670987|ref|YP_006923358.1| - 0.081 12.3 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|410670987|ref|YP_006923358.1| - 0.092 12.3 0.0 0.23 11.1 0.0 1.7 2 0 0 2 2 2 0 NACHT domain DAP3 PF10236.4 gi|410670987|ref|YP_006923358.1| - 0.11 11.4 0.0 0.22 10.3 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 IstB_IS21 PF01695.12 gi|410670987|ref|YP_006923358.1| - 0.12 11.7 0.0 0.26 10.6 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|410670987|ref|YP_006923358.1| - 0.12 11.4 0.1 0.28 10.2 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin Dioxygenase_N PF04444.9 gi|410670987|ref|YP_006923358.1| - 0.14 12.2 0.0 22 5.1 0.0 2.3 2 0 0 2 2 2 0 Catechol dioxygenase N terminus AAA_24 PF13479.1 gi|410670987|ref|YP_006923358.1| - 0.17 11.4 0.5 2.3 7.7 0.1 2.4 2 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|410670987|ref|YP_006923358.1| - 0.19 11.9 1.0 0.47 10.6 0.7 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) GTP_EFTU_D2 PF03144.20 gi|410670989|ref|YP_006923360.1| - 3.2e-09 36.7 0.1 1.3e-08 34.8 0.1 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU PF00009.22 gi|410670989|ref|YP_006923360.1| - 8.6e-09 35.0 0.3 3.1e-06 26.7 0.0 2.2 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.1 gi|410670989|ref|YP_006923360.1| - 2.6e-05 23.7 0.3 0.00053 19.5 0.2 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 4 LRR_8 PF13855.1 gi|410670989|ref|YP_006923360.1| - 0.0015 18.2 0.0 0.038 13.7 0.0 2.4 2 0 0 2 2 2 1 Leucine rich repeat F420_oxidored PF03807.12 gi|410670989|ref|YP_006923360.1| - 0.0015 18.9 0.0 0.0037 17.6 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AAA_17 PF13207.1 gi|410670989|ref|YP_006923360.1| - 0.0048 17.6 0.6 0.013 16.3 0.3 2.0 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|410670989|ref|YP_006923360.1| - 0.0068 16.7 0.2 0.015 15.6 0.1 1.6 1 0 0 1 1 1 1 AAA domain PduV-EutP PF10662.4 gi|410670989|ref|YP_006923360.1| - 0.014 14.8 0.9 0.061 12.8 0.6 2.2 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.1 gi|410670989|ref|YP_006923360.1| - 0.019 14.9 0.2 0.034 14.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|410670989|ref|YP_006923360.1| - 0.038 14.4 0.4 0.2 12.1 0.1 2.3 3 0 0 3 3 3 0 Miro-like protein Arf PF00025.16 gi|410670989|ref|YP_006923360.1| - 0.095 11.9 0.5 7.4 5.7 0.1 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family DNA_ligase_A_M PF01068.16 gi|410670990|ref|YP_006923361.1| - 2.1e-20 72.9 0.0 4.2e-20 71.9 0.0 1.4 1 1 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|410670990|ref|YP_006923361.1| - 1.8e-10 40.9 0.2 1.2e-09 38.2 0.0 2.3 2 1 0 2 2 2 1 RNA ligase CBS PF00571.23 gi|410670991|ref|YP_006923362.1| - 3.3e-47 158.0 16.7 3.3e-15 55.5 0.4 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|410670992|ref|YP_006923363.1| - 1.7e-40 136.5 15.8 1.1e-12 47.4 0.0 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|410670994|ref|YP_006923365.1| - 5e-26 90.2 6.8 1.6e-12 47.0 1.7 2.2 2 0 0 2 2 2 2 CBS domain tRNA_anti-codon PF01336.20 gi|410670995|ref|YP_006923366.1| - 1.1e-24 86.1 7.7 1.5e-08 34.3 0.1 3.4 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|410670995|ref|YP_006923366.1| - 0.00096 18.8 0.2 4.6 6.9 0.0 3.2 3 0 0 3 3 3 2 Replication factor-A C terminal domain PTS_2-RNA PF01885.11 gi|410670996|ref|YP_006923367.1| - 1.5e-40 138.4 0.0 1.9e-40 138.1 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family RTC PF01137.16 gi|410670997|ref|YP_006923368.1| - 2.9e-80 268.3 0.0 3.4e-80 268.1 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|410670997|ref|YP_006923368.1| - 4.1e-19 68.5 0.2 7e-19 67.7 0.1 1.3 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Pyr_redox_2 PF07992.9 gi|410670998|ref|YP_006923369.1| - 1.3e-27 97.0 0.0 2.9e-27 95.8 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|410670998|ref|YP_006923369.1| - 3.3e-21 75.4 1.0 4.7e-16 58.9 0.0 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|410670998|ref|YP_006923369.1| - 3.4e-13 49.2 4.2 0.00065 18.6 0.2 4.1 4 0 0 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_dim PF02852.17 gi|410670998|ref|YP_006923369.1| - 2.9e-12 46.6 0.0 7.1e-12 45.3 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K_oxygenase PF13434.1 gi|410670998|ref|YP_006923369.1| - 4.3e-09 35.7 0.0 2.5e-07 29.9 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.9 gi|410670998|ref|YP_006923369.1| - 5.6e-09 34.9 1.2 0.084 11.3 0.1 4.1 4 0 0 4 4 4 3 HI0933-like protein Pyr_redox_3 PF13738.1 gi|410670998|ref|YP_006923369.1| - 2.7e-08 34.1 0.1 0.001 19.2 0.0 3.0 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|410670998|ref|YP_006923369.1| - 1e-07 31.2 2.8 0.038 12.8 0.0 3.3 3 0 0 3 3 3 3 FAD binding domain NAD_binding_8 PF13450.1 gi|410670998|ref|YP_006923369.1| - 4.6e-07 29.7 0.6 0.0045 16.9 0.1 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain ApbA PF02558.11 gi|410670998|ref|YP_006923369.1| - 2.7e-06 26.8 0.1 0.067 12.6 0.0 2.4 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|410670998|ref|YP_006923369.1| - 7e-06 25.8 0.0 0.12 12.1 0.0 2.4 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GIDA PF01134.17 gi|410670998|ref|YP_006923369.1| - 4.5e-05 22.4 0.8 0.017 14.0 0.0 3.2 3 0 0 3 3 3 1 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|410670998|ref|YP_006923369.1| - 7.7e-05 22.4 0.1 0.004 16.8 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|410670998|ref|YP_006923369.1| - 0.00019 20.6 0.0 0.19 10.8 0.0 2.7 2 1 1 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|410670998|ref|YP_006923369.1| - 0.00037 20.4 0.6 0.46 10.5 0.1 3.2 2 1 0 2 2 2 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|410670998|ref|YP_006923369.1| - 0.00088 19.4 0.1 0.32 11.2 0.0 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|410670998|ref|YP_006923369.1| - 0.0011 19.3 0.6 0.9 10.0 0.0 3.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.14 gi|410670998|ref|YP_006923369.1| - 0.0016 17.5 0.3 0.028 13.4 0.1 2.2 2 0 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.1 gi|410670998|ref|YP_006923369.1| - 0.0034 17.1 0.3 2.8 7.7 0.0 3.1 3 0 0 3 3 3 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|410670998|ref|YP_006923369.1| - 0.0035 16.2 1.3 1.8 7.4 0.0 2.5 2 1 0 2 2 2 2 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.9 gi|410670998|ref|YP_006923369.1| - 0.0099 15.2 1.0 1.8 7.9 0.1 2.8 3 1 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CPSase_L_chain PF00289.17 gi|410670998|ref|YP_006923369.1| - 0.011 15.8 0.0 0.75 9.9 0.0 2.4 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain FAD_oxidored PF12831.2 gi|410670998|ref|YP_006923369.1| - 0.012 14.7 1.8 1 8.3 0.4 3.0 2 1 1 3 3 3 0 FAD dependent oxidoreductase NAD_binding_2 PF03446.10 gi|410670998|ref|YP_006923369.1| - 0.019 14.8 0.0 0.36 10.6 0.0 2.3 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|410670998|ref|YP_006923369.1| - 0.038 14.0 0.1 5.3 7.1 0.0 2.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Trp_halogenase PF04820.9 gi|410670998|ref|YP_006923369.1| - 0.074 11.6 0.5 0.62 8.6 0.0 2.4 3 0 0 3 3 3 0 Tryptophan halogenase ThiF PF00899.16 gi|410670998|ref|YP_006923369.1| - 0.079 12.7 0.6 2.8 7.7 0.0 2.6 3 0 0 3 3 2 0 ThiF family DUF2338 PF10100.4 gi|410670998|ref|YP_006923369.1| - 0.097 11.0 0.1 0.84 7.9 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2338) Saccharop_dh PF03435.13 gi|410670998|ref|YP_006923369.1| - 0.18 10.7 1.3 0.79 8.6 0.1 2.1 2 0 0 2 2 2 0 Saccharopine dehydrogenase Ldh_1_N PF00056.18 gi|410670998|ref|YP_006923369.1| - 1.5 8.6 4.1 10 5.9 0.6 2.9 3 1 0 3 3 2 0 lactate/malate dehydrogenase, NAD binding domain Toprim_4 PF13662.1 gi|410671000|ref|YP_006923371.1| - 5.6e-11 42.3 0.3 1.5e-10 40.8 0.2 1.8 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|410671000|ref|YP_006923371.1| - 7.9e-05 22.5 0.1 0.00032 20.6 0.0 2.0 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|410671000|ref|YP_006923371.1| - 0.01 16.1 0.0 0.022 15.0 0.0 1.6 1 0 0 1 1 1 0 Toprim-like Suf PF05843.9 gi|410671000|ref|YP_006923371.1| - 0.049 13.3 4.9 0.085 12.5 3.4 1.4 1 0 0 1 1 1 0 Suppressor of forked protein (Suf) UPF0058 PF01893.11 gi|410671001|ref|YP_006923372.1| - 1e-31 108.8 0.5 1.2e-31 108.5 0.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Acetyltransf_1 PF00583.19 gi|410671002|ref|YP_006923373.1| - 4.8e-16 58.5 0.6 7.4e-16 57.9 0.4 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|410671002|ref|YP_006923373.1| - 7.8e-11 42.1 0.0 1.2e-10 41.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|410671002|ref|YP_006923373.1| - 8.2e-11 41.9 0.2 1.2e-10 41.3 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|410671002|ref|YP_006923373.1| - 6.1e-09 35.5 0.0 1e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|410671002|ref|YP_006923373.1| - 1.8e-06 27.7 0.0 3.2e-06 27.0 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|410671002|ref|YP_006923373.1| - 3.3e-05 23.9 0.1 4.5e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|410671002|ref|YP_006923373.1| - 0.00038 20.3 0.0 0.00053 19.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|410671002|ref|YP_006923373.1| - 0.0023 18.1 0.1 0.0042 17.2 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|410671002|ref|YP_006923373.1| - 0.0048 16.7 0.0 0.0088 15.9 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|410671002|ref|YP_006923373.1| - 0.086 12.4 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|410671002|ref|YP_006923373.1| - 0.097 11.9 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 TGT PF01702.13 gi|410671003|ref|YP_006923374.1| - 8e-23 80.9 0.1 1.4e-22 80.1 0.1 1.4 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.1 gi|410671003|ref|YP_006923374.1| - 3.1e-14 52.5 0.0 7.5e-14 51.3 0.0 1.6 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|410671003|ref|YP_006923374.1| - 4.8e-14 51.8 0.1 1e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 PUA domain FAD-oxidase_C PF02913.14 gi|410671004|ref|YP_006923375.1| - 1.4e-54 185.0 0.0 2e-54 184.5 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|410671004|ref|YP_006923375.1| - 2.7e-44 149.9 0.9 3.3e-44 149.7 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain NAD_binding_5 PF07994.7 gi|410671004|ref|YP_006923375.1| - 0.095 12.1 0.0 0.91 8.9 0.0 2.0 2 0 0 2 2 2 0 Myo-inositol-1-phosphate synthase CCG PF02754.11 gi|410671005|ref|YP_006923376.1| - 1e-31 108.7 1.3 8.2e-16 57.7 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|410671005|ref|YP_006923376.1| - 5.8e-11 42.2 4.2 5.8e-11 42.2 2.9 2.7 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410671005|ref|YP_006923376.1| - 4.1e-09 36.6 3.0 4.1e-09 36.6 2.1 2.5 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410671005|ref|YP_006923376.1| - 4e-08 33.5 4.7 4e-08 33.5 3.3 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410671005|ref|YP_006923376.1| - 7.6e-06 25.6 8.4 7.6e-06 25.6 5.8 2.7 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410671005|ref|YP_006923376.1| - 9.1e-05 23.1 8.4 0.0062 17.2 0.1 3.2 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|410671005|ref|YP_006923376.1| - 0.00013 21.4 22.1 0.0013 18.2 1.4 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|410671005|ref|YP_006923376.1| - 0.00023 20.8 19.9 0.014 15.3 3.0 3.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|410671005|ref|YP_006923376.1| - 0.00032 20.9 11.6 0.00032 20.9 8.0 3.4 3 2 1 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|410671005|ref|YP_006923376.1| - 0.00047 20.5 14.1 0.028 14.8 0.2 3.7 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410671005|ref|YP_006923376.1| - 0.0017 18.1 14.1 0.09 12.6 1.1 3.8 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410671005|ref|YP_006923376.1| - 0.012 15.8 1.9 0.012 15.8 1.3 3.8 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|410671005|ref|YP_006923376.1| - 0.22 11.9 10.9 1.2 9.6 0.8 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|410671005|ref|YP_006923376.1| - 0.39 11.3 27.5 0.12 12.9 3.1 4.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|410671005|ref|YP_006923376.1| - 0.53 10.8 6.4 3.6 8.2 0.1 3.0 3 0 0 3 3 2 0 4Fe-4S single cluster domain CheB_methylest PF01339.12 gi|410671007|ref|YP_006923378.1| - 3.6e-62 209.0 0.0 8.4e-62 207.8 0.0 1.7 1 0 0 1 1 1 1 CheB methylesterase CheR PF01739.13 gi|410671007|ref|YP_006923378.1| - 2e-57 193.6 0.0 4.2e-57 192.6 0.0 1.6 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain PAS_10 PF13596.1 gi|410671007|ref|YP_006923378.1| - 6.3e-21 74.6 0.2 5.8e-19 68.3 0.1 3.0 3 0 0 3 3 2 1 PAS domain PAS PF00989.19 gi|410671007|ref|YP_006923378.1| - 5.1e-14 52.0 0.0 6.3e-11 42.0 0.0 3.5 3 0 0 3 3 3 1 PAS fold PAS_9 PF13426.1 gi|410671007|ref|YP_006923378.1| - 1.4e-12 47.8 0.1 2.1e-08 34.4 0.0 3.7 3 0 0 3 3 3 2 PAS domain CheR_N PF03705.10 gi|410671007|ref|YP_006923378.1| - 5.5e-11 41.6 0.4 1.1e-10 40.6 0.2 1.6 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain IncA PF04156.9 gi|410671007|ref|YP_006923378.1| - 1.4e-06 28.0 17.3 2.6e-06 27.1 12.0 1.4 1 0 0 1 1 1 1 IncA protein PAS_4 PF08448.5 gi|410671007|ref|YP_006923378.1| - 6e-06 26.2 0.0 0.0073 16.3 0.0 3.5 3 0 0 3 3 3 1 PAS fold PAS_3 PF08447.6 gi|410671007|ref|YP_006923378.1| - 1.3e-05 25.2 0.0 5.1e-05 23.2 0.0 2.0 2 0 0 2 2 1 1 PAS fold PAS_8 PF13188.1 gi|410671007|ref|YP_006923378.1| - 1.7e-05 24.5 0.0 0.00013 21.7 0.0 2.4 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|410671007|ref|YP_006923378.1| - 0.00032 20.7 0.4 0.028 14.4 0.0 3.4 3 0 0 3 3 3 1 PAS fold Exonuc_VII_L PF02601.10 gi|410671007|ref|YP_006923378.1| - 0.001 18.3 2.3 0.0021 17.3 1.6 1.5 1 0 0 1 1 1 1 Exonuclease VII, large subunit CENP-F_leu_zip PF10473.4 gi|410671007|ref|YP_006923378.1| - 0.0032 17.3 16.7 0.0093 15.8 11.6 1.8 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Filament PF00038.16 gi|410671007|ref|YP_006923378.1| - 0.0037 16.7 12.3 0.0068 15.9 8.5 1.4 1 0 0 1 1 1 1 Intermediate filament protein HAUS-augmin3 PF14932.1 gi|410671007|ref|YP_006923378.1| - 0.0041 16.3 13.3 0.0093 15.1 9.2 1.5 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 3 Methyltransf_18 PF12847.2 gi|410671007|ref|YP_006923378.1| - 0.012 16.1 0.0 0.061 13.9 0.0 2.3 2 0 0 2 2 1 0 Methyltransferase domain OmpH PF03938.9 gi|410671007|ref|YP_006923378.1| - 0.018 14.9 8.9 0.045 13.6 6.2 1.6 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Fez1 PF06818.10 gi|410671007|ref|YP_006923378.1| - 0.018 15.0 8.8 0.036 14.0 6.1 1.4 1 0 0 1 1 1 0 Fez1 Mod_r PF07200.8 gi|410671007|ref|YP_006923378.1| - 0.02 14.8 13.1 0.051 13.4 9.1 1.7 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein TBPIP PF07106.8 gi|410671007|ref|YP_006923378.1| - 0.023 14.2 18.1 0.019 14.4 9.6 2.5 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) APG6 PF04111.7 gi|410671007|ref|YP_006923378.1| - 0.025 13.6 11.1 0.044 12.8 7.3 1.6 2 0 0 2 2 1 0 Autophagy protein Apg6 HrpB7 PF09486.5 gi|410671007|ref|YP_006923378.1| - 0.031 14.1 1.8 0.23 11.4 0.1 2.3 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) Spc7 PF08317.6 gi|410671007|ref|YP_006923378.1| - 0.064 11.9 16.6 0.4 9.3 11.5 2.2 1 1 0 1 1 1 0 Spc7 kinetochore protein DUF342 PF03961.8 gi|410671007|ref|YP_006923378.1| - 0.082 11.3 7.5 0.17 10.2 5.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF342) V_ATPase_I PF01496.14 gi|410671007|ref|YP_006923378.1| - 0.15 9.8 7.7 0.25 9.1 5.4 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family IFT57 PF10498.4 gi|410671007|ref|YP_006923378.1| - 0.17 10.5 13.0 0.32 9.6 9.0 1.3 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 DUF948 PF06103.6 gi|410671007|ref|YP_006923378.1| - 0.29 11.0 8.5 4.5 7.1 2.6 3.1 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) Prominin PF05478.6 gi|410671007|ref|YP_006923378.1| - 0.3 8.5 5.9 0.46 7.9 4.1 1.2 1 0 0 1 1 1 0 Prominin Reo_sigmaC PF04582.7 gi|410671007|ref|YP_006923378.1| - 0.35 10.0 4.2 0.58 9.2 2.9 1.3 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Peptidase_C6 PF00851.13 gi|410671007|ref|YP_006923378.1| - 0.42 9.1 4.1 0.76 8.3 2.8 1.3 1 0 0 1 1 1 0 Helper component proteinase Atg14 PF10186.4 gi|410671007|ref|YP_006923378.1| - 0.47 9.3 10.6 0.85 8.5 7.3 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 MCC-bdg_PDZ PF10506.4 gi|410671007|ref|YP_006923378.1| - 0.54 10.1 13.1 2.4 8.0 1.7 2.6 1 1 1 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome DUF4407 PF14362.1 gi|410671007|ref|YP_006923378.1| - 0.62 8.9 6.4 0.49 9.3 3.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) RmuC PF02646.11 gi|410671007|ref|YP_006923378.1| - 1.2 7.9 13.6 0.74 8.5 3.9 2.7 2 1 2 4 4 4 0 RmuC family EAP30 PF04157.11 gi|410671007|ref|YP_006923378.1| - 2.7 7.1 11.0 0.29 10.2 3.8 2.0 1 1 1 2 2 2 0 EAP30/Vps36 family TMPIT PF07851.8 gi|410671007|ref|YP_006923378.1| - 4.6 6.2 6.7 7.8 5.4 4.6 1.3 1 0 0 1 1 1 0 TMPIT-like protein EMP24_GP25L PF01105.19 gi|410671007|ref|YP_006923378.1| - 5 6.7 11.6 2 8.1 5.1 2.2 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD DDE_Tnp_IS1 PF03400.8 gi|410671008|ref|YP_006923379.1| - 2.9e-08 33.8 0.1 3.2e-08 33.7 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase Desulfoferrod_N PF06397.7 gi|410671009|ref|YP_006923380.1| - 0.011 15.0 1.5 0.16 11.4 0.1 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF1724 PF08350.5 gi|410671010|ref|YP_006923381.1| - 9.1e-16 57.1 0.1 1.7e-15 56.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) TFIID_90kDa PF04494.10 gi|410671010|ref|YP_006923381.1| - 0.0022 18.0 1.0 0.005 16.9 0.7 1.6 1 0 0 1 1 1 1 WD40 associated region in TFIID subunit HTH_45 PF14947.1 gi|410671010|ref|YP_006923381.1| - 0.028 14.2 0.3 0.066 13.0 0.2 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix Radical_SAM_N PF08497.5 gi|410671012|ref|YP_006923383.1| - 1.7e-134 447.4 0.0 2.3e-134 447.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.3 gi|410671012|ref|YP_006923383.1| - 1.9e-16 60.3 0.0 3.4e-16 59.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.16 gi|410671012|ref|YP_006923383.1| - 5.4e-15 55.9 0.1 4.4e-14 52.9 0.1 2.2 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|410671012|ref|YP_006923383.1| - 1.9e-05 24.4 0.0 0.1 12.4 0.0 3.0 3 0 0 3 3 3 2 B12 binding domain Lactamase_B PF00753.22 gi|410671013|ref|YP_006923384.1| - 3.6e-33 114.8 0.7 4.1e-33 114.6 0.5 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|410671013|ref|YP_006923384.1| - 1.4e-05 24.6 0.1 2e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|410671013|ref|YP_006923384.1| - 0.082 12.6 0.1 0.16 11.6 0.1 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain TatD_DNase PF01026.16 gi|410671014|ref|YP_006923385.1| - 1.1e-62 211.5 0.0 1.3e-62 211.3 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase AP_endonuc_2 PF01261.19 gi|410671014|ref|YP_006923385.1| - 0.0053 16.0 0.0 0.23 10.7 0.0 2.3 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel HMGL-like PF00682.14 gi|410671015|ref|YP_006923386.1| - 1.1e-51 175.8 4.6 2.1e-51 174.8 3.2 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|410671015|ref|YP_006923386.1| - 5.6e-30 103.8 1.5 1e-29 102.9 1.1 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Pyr_redox_2 PF07992.9 gi|410671016|ref|YP_006923387.1| - 2.7e-24 86.1 0.0 7.3e-24 84.7 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|410671016|ref|YP_006923387.1| - 7e-21 74.3 0.2 1.5e-20 73.2 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|410671016|ref|YP_006923387.1| - 1.3e-13 51.0 0.1 6e-13 49.0 0.0 2.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|410671016|ref|YP_006923387.1| - 3.1e-06 27.3 0.0 3.8e-05 23.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|410671016|ref|YP_006923387.1| - 3.5e-05 22.9 0.0 0.014 14.3 0.0 2.5 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.19 gi|410671016|ref|YP_006923387.1| - 0.05 12.4 0.3 5.5 5.7 0.0 2.8 3 0 0 3 3 3 0 FAD dependent oxidoreductase F420_ligase PF01996.11 gi|410671017|ref|YP_006923388.1| - 5.2e-68 228.5 0.1 5.9e-68 228.3 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase RBD PF02196.10 gi|410671017|ref|YP_006923388.1| - 0.09 12.5 0.1 0.4 10.4 0.0 2.0 2 0 0 2 2 2 0 Raf-like Ras-binding domain ThiC PF01964.13 gi|410671018|ref|YP_006923389.1| - 1.6e-146 488.1 0.0 1.8e-146 487.9 0.0 1.0 1 0 0 1 1 1 1 ThiC family AIRC PF00731.15 gi|410671018|ref|YP_006923389.1| - 0.013 14.7 0.2 2.6 7.2 0.0 2.3 2 0 0 2 2 2 0 AIR carboxylase KH_2 PF07650.12 gi|410671018|ref|YP_006923389.1| - 0.077 12.5 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 KH domain AP_endonuc_2 PF01261.19 gi|410671018|ref|YP_006923389.1| - 0.099 11.9 0.0 0.18 11.0 0.0 1.4 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF1792 PF08759.6 gi|410671018|ref|YP_006923389.1| - 0.15 11.6 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1792) MTHFR PF02219.12 gi|410671019|ref|YP_006923390.1| - 1.4e-35 122.8 0.0 1.6e-35 122.6 0.0 1.0 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase Glyco_transf_28 PF03033.15 gi|410671019|ref|YP_006923390.1| - 0.012 15.3 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain DUF3132 PF11330.3 gi|410671019|ref|YP_006923390.1| - 0.14 12.0 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3132) MTHFR_C PF12225.3 gi|410671020|ref|YP_006923391.1| - 9.5e-31 105.2 0.5 9.5e-31 105.2 0.3 1.5 2 0 0 2 2 2 1 Methylene-tetrahydrofolate reductase C terminal Fer4_7 PF12838.2 gi|410671020|ref|YP_006923391.1| - 2.2 8.7 10.6 4.6 7.7 4.8 2.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|410671020|ref|YP_006923391.1| - 4.9 6.9 9.9 0.57 9.8 0.6 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Pterin_bind PF00809.17 gi|410671021|ref|YP_006923392.1| - 1.3e-41 142.2 0.2 2.6e-41 141.3 0.2 1.5 1 0 0 1 1 1 1 Pterin binding enzyme THF_DHG_CYH_C PF02882.14 gi|410671022|ref|YP_006923393.1| - 9e-65 216.6 3.7 1.5e-64 215.9 2.6 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|410671022|ref|YP_006923393.1| - 1.8e-39 134.4 0.1 2.6e-39 133.8 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AdoHcyase_NAD PF00670.16 gi|410671022|ref|YP_006923393.1| - 0.0034 17.2 1.4 0.21 11.4 1.0 2.2 1 1 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PTS_IIB PF02302.12 gi|410671022|ref|YP_006923393.1| - 0.23 11.9 1.7 0.86 10.1 0.1 2.6 2 2 2 4 4 4 0 PTS system, Lactose/Cellobiose specific IIB subunit SHMT PF00464.14 gi|410671023|ref|YP_006923394.1| - 3.8e-170 565.5 1.5 4.4e-170 565.3 1.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|410671023|ref|YP_006923394.1| - 2.9e-07 29.9 1.0 4e-07 29.4 0.7 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|410671023|ref|YP_006923394.1| - 0.00074 18.3 0.0 0.0013 17.5 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|410671023|ref|YP_006923394.1| - 0.0016 17.5 0.3 0.0026 16.8 0.2 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.15 gi|410671023|ref|YP_006923394.1| - 0.012 14.2 0.1 0.031 12.8 0.1 1.7 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Formyl_trans_N PF00551.14 gi|410671024|ref|YP_006923395.1| - 9.6e-54 181.6 0.0 1.1e-53 181.4 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase HTH_3 PF01381.17 gi|410671025|ref|YP_006923396.1| - 4.1e-08 32.9 1.9 4.6e-08 32.7 0.2 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|410671025|ref|YP_006923396.1| - 2e-07 31.1 0.2 4.4e-07 29.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|410671025|ref|YP_006923396.1| - 2.6e-07 30.5 0.0 6.3e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|410671025|ref|YP_006923396.1| - 7.5e-05 22.3 0.2 0.0007 19.1 0.1 2.7 4 0 0 4 4 4 1 HTH domain HTH_25 PF13413.1 gi|410671025|ref|YP_006923396.1| - 0.03 13.9 0.0 0.082 12.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|410671025|ref|YP_006923396.1| - 0.032 13.8 0.1 5.8 6.5 0.0 2.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|410671025|ref|YP_006923396.1| - 0.08 12.6 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MarR PF01047.17 gi|410671025|ref|YP_006923396.1| - 0.096 12.4 0.0 1.2 8.8 0.0 2.4 2 0 0 2 2 2 0 MarR family MerR_1 PF13411.1 gi|410671025|ref|YP_006923396.1| - 0.13 12.0 0.0 0.29 10.9 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein DUF1743 PF08489.6 gi|410671026|ref|YP_006923397.1| - 1.3e-36 124.8 0.0 2.2e-36 124.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|410671026|ref|YP_006923397.1| - 0.00041 20.1 0.0 0.00073 19.3 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Zn_Tnp_IS1595 PF12760.2 gi|410671026|ref|YP_006923397.1| - 0.045 13.5 1.4 0.12 12.1 0.9 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|410671026|ref|YP_006923397.1| - 0.051 13.2 2.0 0.14 11.8 1.4 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|410671026|ref|YP_006923397.1| - 0.1 12.4 5.5 0.08 12.7 0.6 2.8 3 0 0 3 3 3 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|410671026|ref|YP_006923397.1| - 0.26 10.8 4.8 0.7 9.4 3.3 1.7 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain C1_1 PF00130.17 gi|410671026|ref|YP_006923397.1| - 1 9.1 3.4 0.8 9.4 0.6 2.0 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.5 gi|410671026|ref|YP_006923397.1| - 1.1 9.2 4.5 20 5.2 0.1 3.0 3 0 0 3 3 3 0 Zinc ribbon domain NAD_synthase PF02540.12 gi|410671027|ref|YP_006923398.1| - 3.6e-83 278.1 0.0 4.6e-83 277.8 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|410671027|ref|YP_006923398.1| - 1.5e-06 27.0 0.0 1.5e-05 23.7 0.0 2.0 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|410671027|ref|YP_006923398.1| - 0.0017 17.9 0.0 0.0022 17.5 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase UPF0278 PF08745.6 gi|410671029|ref|YP_006923400.1| - 0.0005 19.3 0.3 0.00096 18.4 0.1 1.3 1 1 0 1 1 1 1 UPF0278 family PIN_4 PF13638.1 gi|410671029|ref|YP_006923400.1| - 0.0052 16.8 0.1 0.0078 16.3 0.1 1.2 1 0 0 1 1 1 1 PIN domain Rad50_zn_hook PF04423.9 gi|410671029|ref|YP_006923400.1| - 0.013 14.9 1.6 0.052 13.0 0.1 2.3 1 1 1 2 2 2 0 Rad50 zinc hook motif DNA_ligase_ZBD PF03119.11 gi|410671029|ref|YP_006923400.1| - 0.056 13.1 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain OrfB_Zn_ribbon PF07282.6 gi|410671029|ref|YP_006923400.1| - 0.06 13.0 0.6 0.58 9.8 0.1 2.6 2 1 1 3 3 3 0 Putative transposase DNA-binding domain zf-C4_Topoisom PF01396.14 gi|410671029|ref|YP_006923400.1| - 0.071 12.6 1.1 0.13 11.7 0.7 1.4 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Zn_Tnp_IS1595 PF12760.2 gi|410671029|ref|YP_006923400.1| - 0.23 11.3 2.0 0.38 10.6 1.4 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Pribosyltran PF00156.22 gi|410671030|ref|YP_006923401.1| - 1.1e-24 86.5 0.4 1.9e-24 85.7 0.3 1.4 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|410671030|ref|YP_006923401.1| - 0.00027 20.2 0.2 0.00038 19.7 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|410671030|ref|YP_006923401.1| - 0.00053 19.3 0.1 0.002 17.4 0.1 1.9 1 1 0 1 1 1 1 Phosphoribosyl transferase HTH_23 PF13384.1 gi|410671030|ref|YP_006923401.1| - 0.0009 18.8 0.1 0.0029 17.1 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_7 PF02796.10 gi|410671030|ref|YP_006923401.1| - 0.0011 18.7 0.1 0.0029 17.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase GerE PF00196.14 gi|410671030|ref|YP_006923401.1| - 0.0021 17.3 0.0 0.0042 16.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|410671030|ref|YP_006923401.1| - 0.014 14.8 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 PRTase_3 PF15610.1 gi|410671030|ref|YP_006923401.1| - 0.024 13.5 0.0 0.17 10.7 0.0 1.9 1 1 1 2 2 2 0 PRTase ComF-like DUF2481 PF10654.4 gi|410671030|ref|YP_006923401.1| - 0.028 14.0 0.0 0.15 11.7 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2481) Terminase_5 PF06056.7 gi|410671030|ref|YP_006923401.1| - 0.031 13.8 0.0 0.055 13.0 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) Fe_dep_repress PF01325.14 gi|410671030|ref|YP_006923401.1| - 0.039 13.9 0.1 3.1 7.7 0.0 2.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|410671030|ref|YP_006923401.1| - 0.04 13.5 0.9 0.2 11.3 0.0 2.3 3 0 0 3 3 3 0 HTH domain PAX PF00292.13 gi|410671030|ref|YP_006923401.1| - 0.066 12.9 0.1 0.67 9.6 0.0 2.2 2 0 0 2 2 2 0 'Paired box' domain HTH_29 PF13551.1 gi|410671030|ref|YP_006923401.1| - 0.074 13.1 0.0 0.17 12.0 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn helix HTH_24 PF13412.1 gi|410671030|ref|YP_006923401.1| - 0.081 12.3 0.0 0.22 10.9 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DHH PF01368.15 gi|410671031|ref|YP_006923402.1| - 3.3e-11 43.0 0.2 7.6e-11 41.8 0.1 1.6 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|410671031|ref|YP_006923402.1| - 5.6e-09 35.7 0.0 1.4e-08 34.4 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|410671031|ref|YP_006923402.1| - 8.7e-08 32.1 2.3 8.8e-08 32.1 0.4 2.0 2 0 0 2 2 2 1 S1 RNA binding domain DnaJ_CXXCXGXG PF00684.14 gi|410671031|ref|YP_006923402.1| - 1e-05 25.4 18.5 1e-05 25.4 12.8 3.0 1 1 1 2 2 2 2 DnaJ central domain tRNA_anti_2 PF13742.1 gi|410671031|ref|YP_006923402.1| - 0.00014 21.6 0.0 0.00094 19.0 0.0 2.4 3 0 0 3 3 3 1 OB-fold nucleic acid binding domain S1_2 PF13509.1 gi|410671031|ref|YP_006923402.1| - 0.0011 18.8 0.0 0.0022 17.8 0.0 1.6 1 0 0 1 1 1 1 S1 domain DUF3235 PF11574.3 gi|410671031|ref|YP_006923402.1| - 0.14 12.4 0.1 0.56 10.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3235) zf-CCHC_6 PF15288.1 gi|410671031|ref|YP_006923402.1| - 0.79 9.4 7.5 0.084 12.5 1.9 1.8 2 0 0 2 2 2 0 Zinc knuckle zf-ribbon_3 PF13248.1 gi|410671031|ref|YP_006923402.1| - 0.98 8.7 12.2 1.6 8.0 1.7 2.6 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|410671031|ref|YP_006923402.1| - 2.1 8.0 21.3 3.5 7.3 1.0 4.3 3 1 0 3 3 3 0 Hydrogenase expression/synthesis hypA family Auto_anti-p27 PF06677.7 gi|410671031|ref|YP_006923402.1| - 5.7 6.7 12.2 0.1 12.3 0.4 3.1 2 1 1 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Band_7 PF01145.20 gi|410671032|ref|YP_006923403.1| - 2.7e-36 125.1 4.2 3.8e-36 124.6 2.9 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Glyco_hydro_80 PF13647.1 gi|410671032|ref|YP_006923403.1| - 0.0022 17.3 0.1 0.0027 17.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 80 of chitosanase A Band_7_1 PF13421.1 gi|410671032|ref|YP_006923403.1| - 0.0096 15.4 0.1 0.02 14.4 0.0 1.6 1 0 0 1 1 1 1 SPFH domain-Band 7 family NurA PF09376.5 gi|410671032|ref|YP_006923403.1| - 0.031 13.7 0.2 0.042 13.3 0.1 1.2 1 0 0 1 1 1 0 NurA domain NfeD PF01957.13 gi|410671033|ref|YP_006923404.1| - 2.5e-30 105.4 0.4 2.5e-30 105.4 0.3 2.6 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|410671033|ref|YP_006923404.1| - 5e-05 23.0 0.1 8.4e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Clp protease Asp_Glu_race PF01177.17 gi|410671033|ref|YP_006923404.1| - 0.0035 17.2 0.1 0.0061 16.4 0.1 1.4 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase FMN_dh PF01070.13 gi|410671033|ref|YP_006923404.1| - 0.13 11.1 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase AIRS_C PF02769.17 gi|410671034|ref|YP_006923405.1| - 2.2e-17 63.4 2.1 4.8e-17 62.3 1.4 1.6 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|410671034|ref|YP_006923405.1| - 5.6e-14 52.1 0.1 1.7e-13 50.6 0.1 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain GATase PF00117.23 gi|410671035|ref|YP_006923406.1| - 1.6e-31 109.2 0.0 1.8e-31 109.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|410671035|ref|YP_006923406.1| - 6.6e-08 32.3 0.0 1.6e-07 31.1 0.0 1.5 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|410671035|ref|YP_006923406.1| - 8.2e-07 28.6 0.1 2.8e-06 26.9 0.0 1.8 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.9 gi|410671035|ref|YP_006923406.1| - 1.3e-06 28.1 2.4 6.3e-06 25.8 1.7 1.9 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain HTH_OrfB_IS605 PF12323.3 gi|410671036|ref|YP_006923407.1| - 1.3e-14 53.1 0.5 1.3e-14 53.1 0.3 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain DUF772 PF05598.6 gi|410671037|ref|YP_006923408.1| - 1.5e-21 76.0 0.1 5.3e-21 74.3 0.0 1.8 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|410671037|ref|YP_006923408.1| - 2.9e-12 46.6 0.8 1.4e-10 41.0 0.6 2.2 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|410671037|ref|YP_006923408.1| - 0.00028 20.5 0.1 0.0005 19.7 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|410671037|ref|YP_006923408.1| - 0.00041 20.1 0.1 0.00075 19.2 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|410671037|ref|YP_006923408.1| - 0.021 14.8 0.1 0.043 13.8 0.1 1.5 1 0 0 1 1 1 0 Transposase DDE domain OrfB_IS605 PF01385.14 gi|410671038|ref|YP_006923409.1| - 9.7e-33 113.4 3.8 1.3e-32 113.0 2.6 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|410671038|ref|YP_006923409.1| - 5.5e-25 86.8 1.5 2.8e-23 81.3 1.0 2.6 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Octopine_DH PF02317.12 gi|410671038|ref|YP_006923409.1| - 0.089 12.4 0.1 0.19 11.3 0.1 1.5 1 0 0 1 1 1 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Phage_integrase PF00589.17 gi|410671040|ref|YP_006923411.1| - 3.4e-19 69.1 0.0 5.9e-19 68.3 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family zf-ribbon_3 PF13248.1 gi|410671040|ref|YP_006923411.1| - 0.00012 21.1 0.7 0.00024 20.1 0.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|410671040|ref|YP_006923411.1| - 0.00057 19.6 0.4 0.0011 18.7 0.3 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|410671040|ref|YP_006923411.1| - 0.0017 17.7 1.4 0.0034 16.8 0.9 1.5 1 0 0 1 1 1 1 zinc-ribbon domain EF-hand_like PF09279.6 gi|410671041|ref|YP_006923412.1| - 0.037 14.0 0.2 0.061 13.3 0.1 1.3 1 0 0 1 1 1 0 Phosphoinositide-specific phospholipase C, efhand-like EF-hand_7 PF13499.1 gi|410671041|ref|YP_006923412.1| - 0.038 14.1 0.0 0.064 13.3 0.0 1.3 1 0 0 1 1 1 0 EF-hand domain pair UDPG_MGDP_dh_N PF03721.9 gi|410671044|ref|YP_006923415.1| - 4.2e-64 215.3 0.4 6.7e-64 214.6 0.3 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|410671044|ref|YP_006923415.1| - 1.4e-35 121.3 0.0 3.5e-35 120.0 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|410671044|ref|YP_006923415.1| - 4.4e-27 94.3 0.0 2e-26 92.2 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|410671044|ref|YP_006923415.1| - 2.7e-07 30.4 0.1 8.4e-07 28.8 0.1 1.9 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|410671044|ref|YP_006923415.1| - 1.2e-05 25.0 0.0 3.1e-05 23.7 0.0 1.7 2 0 0 2 2 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|410671044|ref|YP_006923415.1| - 0.00047 20.5 0.0 0.038 14.4 0.0 3.0 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.16 gi|410671044|ref|YP_006923415.1| - 0.00076 19.0 0.0 0.0018 17.8 0.0 1.7 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.22 gi|410671044|ref|YP_006923415.1| - 0.0027 18.0 0.1 0.0089 16.4 0.1 2.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|410671044|ref|YP_006923415.1| - 0.0028 17.1 0.0 0.0054 16.1 0.0 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|410671044|ref|YP_006923415.1| - 0.005 16.6 0.1 0.063 13.1 0.1 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|410671044|ref|YP_006923415.1| - 0.0056 16.7 0.1 0.022 14.8 0.0 2.0 1 1 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|410671044|ref|YP_006923415.1| - 0.011 14.9 0.0 0.099 11.7 0.0 2.4 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|410671044|ref|YP_006923415.1| - 0.021 13.9 0.0 0.034 13.2 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain GFO_IDH_MocA PF01408.17 gi|410671044|ref|YP_006923415.1| - 0.062 13.8 0.1 0.25 11.8 0.0 2.1 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Dala_Dala_lig_N PF01820.16 gi|410671044|ref|YP_006923415.1| - 0.076 13.3 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 D-ala D-ala ligase N-terminus Pyr_redox_2 PF07992.9 gi|410671044|ref|YP_006923415.1| - 0.13 12.1 0.4 0.44 10.3 0.1 1.9 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|410671044|ref|YP_006923415.1| - 0.78 9.8 3.1 0.97 9.5 0.1 2.7 4 0 0 4 4 4 0 NAD(P)-binding Rossmann-like domain DUF3427 PF11907.3 gi|410671045|ref|YP_006923416.1| - 5.5e-62 209.1 6.3 1.1e-61 208.1 4.4 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3427) ResIII PF04851.10 gi|410671045|ref|YP_006923416.1| - 7.5e-34 117.1 0.5 2.5e-33 115.4 0.3 2.0 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit PLDc_2 PF13091.1 gi|410671045|ref|YP_006923416.1| - 8.7e-17 61.0 0.6 2.2e-16 59.7 0.4 1.7 1 0 0 1 1 1 1 PLD-like domain Helicase_C PF00271.26 gi|410671045|ref|YP_006923416.1| - 2.7e-11 43.1 0.1 1.8e-09 37.3 0.0 2.8 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|410671045|ref|YP_006923416.1| - 2e-09 37.1 0.0 5.2e-09 35.8 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|410671045|ref|YP_006923416.1| - 0.004 16.0 0.0 0.0071 15.1 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain PhoH PF02562.11 gi|410671045|ref|YP_006923416.1| - 0.066 12.4 0.1 0.24 10.6 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein NUDIX PF00293.23 gi|410671046|ref|YP_006923417.1| - 5.7e-20 71.3 0.0 6.2e-20 71.2 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|410671046|ref|YP_006923417.1| - 1.3e-10 40.7 0.1 1.8e-10 40.2 0.0 1.2 1 1 0 1 1 1 1 NUDIX domain NUDIX_2 PF13869.1 gi|410671046|ref|YP_006923417.1| - 0.039 13.2 0.0 0.044 13.1 0.0 1.2 1 0 0 1 1 1 0 Nucleotide hydrolase Methyltransf_11 PF08241.7 gi|410671047|ref|YP_006923418.1| - 1.2e-17 64.1 0.1 1.8e-17 63.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|410671047|ref|YP_006923418.1| - 4.8e-17 61.9 0.0 5.8e-17 61.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|410671047|ref|YP_006923418.1| - 2e-15 56.5 0.0 2.4e-15 56.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|410671047|ref|YP_006923418.1| - 5.7e-15 55.3 0.0 7.9e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410671047|ref|YP_006923418.1| - 6.7e-15 55.6 0.0 9e-15 55.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|410671047|ref|YP_006923418.1| - 4.4e-12 46.3 0.0 9.1e-12 45.3 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|410671047|ref|YP_006923418.1| - 3.9e-11 43.1 0.0 5.4e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|410671047|ref|YP_006923418.1| - 7.6e-11 41.9 0.0 9.8e-11 41.5 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_3 PF01596.12 gi|410671047|ref|YP_006923418.1| - 1.1e-08 34.4 0.0 1.8e-08 33.6 0.0 1.3 1 1 0 1 1 1 1 O-methyltransferase Methyltransf_26 PF13659.1 gi|410671047|ref|YP_006923418.1| - 7.7e-08 32.3 0.0 1.1e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|410671047|ref|YP_006923418.1| - 9.3e-06 25.1 0.0 1.2e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain FtsJ PF01728.14 gi|410671047|ref|YP_006923418.1| - 1.8e-05 24.8 0.0 2.1e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase NodS PF05401.6 gi|410671047|ref|YP_006923418.1| - 5.3e-05 22.7 0.0 6.7e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) RrnaAD PF00398.15 gi|410671047|ref|YP_006923418.1| - 5.4e-05 22.3 0.0 7.4e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14 PF08704.5 gi|410671047|ref|YP_006923418.1| - 5.8e-05 22.7 0.0 6.8e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Met_10 PF02475.11 gi|410671047|ref|YP_006923418.1| - 0.00016 21.3 0.0 0.0002 21.0 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.8 gi|410671047|ref|YP_006923418.1| - 0.00029 20.0 0.0 0.00033 19.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.1 gi|410671047|ref|YP_006923418.1| - 0.00044 21.0 0.0 0.00071 20.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|410671047|ref|YP_006923418.1| - 0.0014 17.6 0.0 0.0018 17.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Nol1_Nop2_Fmu PF01189.12 gi|410671047|ref|YP_006923418.1| - 0.0039 16.6 0.0 0.0049 16.2 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family CMAS PF02353.15 gi|410671047|ref|YP_006923418.1| - 0.0041 16.2 0.0 0.0053 15.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_16 PF10294.4 gi|410671047|ref|YP_006923418.1| - 0.0097 15.3 0.0 0.011 15.1 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_9 PF08003.6 gi|410671047|ref|YP_006923418.1| - 0.011 14.4 0.0 0.013 14.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.12 gi|410671047|ref|YP_006923418.1| - 0.05 12.6 0.0 0.098 11.6 0.0 1.4 2 0 0 2 2 2 0 Putative methyltransferase tRNA_U5-meth_tr PF05958.6 gi|410671047|ref|YP_006923418.1| - 0.1 11.2 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_32 PF13679.1 gi|410671047|ref|YP_006923418.1| - 0.12 12.0 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain YcfA PF07927.7 gi|410671048|ref|YP_006923419.1| - 1.8e-17 62.9 1.0 2.1e-17 62.7 0.7 1.1 1 0 0 1 1 1 1 YcfA-like protein UPF0150 PF03681.10 gi|410671049|ref|YP_006923420.1| - 2.3e-17 62.3 1.6 2.9e-17 62.0 1.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Glyoxalase PF00903.20 gi|410671050|ref|YP_006923421.1| - 2.5e-15 56.5 0.0 2.8e-15 56.4 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|410671050|ref|YP_006923421.1| - 2.1e-13 50.8 0.0 2.5e-13 50.5 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|410671050|ref|YP_006923421.1| - 0.00032 20.6 0.0 0.00057 19.8 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|410671050|ref|YP_006923421.1| - 0.11 12.4 0.0 0.75 9.6 0.0 2.1 1 1 0 1 1 1 0 Glyoxalase-like domain DUF3795 PF12675.2 gi|410671051|ref|YP_006923422.1| - 4.5e-09 36.3 14.9 1e-08 35.2 10.3 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3795) Pro-MCH PF05824.7 gi|410671051|ref|YP_006923422.1| - 0.035 13.6 0.0 0.057 12.9 0.0 1.4 1 0 0 1 1 1 0 Pro-melanin-concentrating hormone (Pro-MCH) N6_Mtase PF02384.11 gi|410671051|ref|YP_006923422.1| - 0.086 11.9 0.6 0.11 11.5 0.4 1.1 1 0 0 1 1 1 0 N-6 DNA Methylase A2L_zn_ribbon PF08792.5 gi|410671051|ref|YP_006923422.1| - 0.31 10.5 7.9 4.2 6.9 5.5 2.7 1 1 0 1 1 1 0 A2L zinc ribbon domain IBR PF01485.16 gi|410671051|ref|YP_006923422.1| - 2.5 8.0 14.9 11 6.0 10.3 2.1 1 1 0 1 1 1 0 IBR domain GyrI-like PF06445.10 gi|410671052|ref|YP_006923423.1| - 2.1e-23 83.0 1.0 2.6e-23 82.7 0.7 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.1 gi|410671052|ref|YP_006923423.1| - 4.1e-08 33.3 0.1 4.7e-08 33.1 0.1 1.1 1 0 0 1 1 1 1 Integron-associated effector binding protein SOUL PF04832.7 gi|410671052|ref|YP_006923423.1| - 8.5e-05 22.1 0.1 0.021 14.3 0.0 2.1 2 0 0 2 2 2 2 SOUL heme-binding protein TetR_N PF00440.18 gi|410671054|ref|YP_006923425.1| - 8.3e-15 54.1 0.0 1.6e-14 53.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|410671054|ref|YP_006923425.1| - 0.0047 16.9 0.0 0.0088 16.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional repressor TetR_C_4 PF08359.6 gi|410671054|ref|YP_006923425.1| - 0.0085 16.0 0.4 0.049 13.5 0.2 2.2 1 1 1 2 2 2 1 YsiA-like protein, C-terminal region ABC_tran PF00005.22 gi|410671055|ref|YP_006923426.1| - 5.4e-36 123.9 0.0 9.4e-36 123.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410671055|ref|YP_006923426.1| - 5.5e-16 59.3 0.9 2.6e-14 53.9 0.6 2.3 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|410671055|ref|YP_006923426.1| - 1.6e-07 30.7 2.1 0.00014 21.0 0.0 2.8 3 0 0 3 3 3 2 AAA ATPase domain AAA_23 PF13476.1 gi|410671055|ref|YP_006923426.1| - 5e-07 30.2 0.1 7e-07 29.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|410671055|ref|YP_006923426.1| - 7e-06 26.4 0.5 1.7e-05 25.1 0.1 1.8 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|410671055|ref|YP_006923426.1| - 4.1e-05 23.0 0.2 7.8e-05 22.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|410671055|ref|YP_006923426.1| - 0.00025 21.2 0.1 0.0041 17.3 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|410671055|ref|YP_006923426.1| - 0.0013 17.9 0.1 0.019 14.2 0.1 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|410671055|ref|YP_006923426.1| - 0.0021 18.1 0.5 0.0057 16.7 0.4 1.7 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|410671055|ref|YP_006923426.1| - 0.0032 16.2 0.0 0.0042 15.8 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_10 PF12846.2 gi|410671055|ref|YP_006923426.1| - 0.0039 16.6 0.1 0.64 9.4 0.0 2.3 2 0 0 2 2 2 1 AAA-like domain MukB PF04310.7 gi|410671055|ref|YP_006923426.1| - 0.0051 16.1 0.0 0.011 15.0 0.0 1.5 1 0 0 1 1 1 1 MukB N-terminal SRP54 PF00448.17 gi|410671055|ref|YP_006923426.1| - 0.0094 15.4 0.0 0.022 14.1 0.0 1.6 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|410671055|ref|YP_006923426.1| - 0.018 14.4 0.3 0.17 11.3 0.2 2.3 1 1 0 1 1 1 0 AAA domain DUF2745 PF10922.3 gi|410671055|ref|YP_006923426.1| - 0.023 14.6 0.1 0.05 13.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2745) GTP_EFTU PF00009.22 gi|410671055|ref|YP_006923426.1| - 0.028 13.8 0.0 3.7 6.9 0.0 2.7 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain IstB_IS21 PF01695.12 gi|410671055|ref|YP_006923426.1| - 0.029 13.7 0.1 4.1 6.7 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|410671055|ref|YP_006923426.1| - 0.051 14.3 0.1 0.12 13.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|410671055|ref|YP_006923426.1| - 0.095 12.6 0.1 5.5 6.8 0.0 2.7 1 1 1 2 2 2 0 AAA domain ABC2_membrane PF01061.19 gi|410671056|ref|YP_006923427.1| - 3.2e-39 134.2 23.7 3.2e-39 134.2 16.4 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|410671056|ref|YP_006923427.1| - 4.9e-16 58.7 31.1 4.9e-16 58.7 21.5 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|410671056|ref|YP_006923427.1| - 3.2e-05 23.1 25.5 4.3e-05 22.7 17.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|410671056|ref|YP_006923427.1| - 0.00048 19.0 21.7 0.0013 17.6 15.0 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein Fic PF02661.13 gi|410671057|ref|YP_006923428.1| - 1.3e-22 80.2 0.0 4.4e-22 78.5 0.0 1.9 2 0 0 2 2 2 1 Fic/DOC family GRIM-19 PF06212.7 gi|410671057|ref|YP_006923428.1| - 0.12 12.0 0.8 0.21 11.2 0.5 1.4 1 0 0 1 1 1 0 GRIM-19 protein NTP_transf_2 PF01909.18 gi|410671058|ref|YP_006923429.1| - 1.1e-09 38.4 2.1 1.4e-09 38.1 0.6 1.7 1 1 1 2 2 2 1 Nucleotidyltransferase domain DUF86 PF01934.12 gi|410671059|ref|YP_006923430.1| - 2.9e-26 91.4 0.0 3.5e-26 91.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF3528 PF12045.3 gi|410671059|ref|YP_006923430.1| - 0.054 13.6 0.0 0.064 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3528) T2SE PF00437.15 gi|410671060|ref|YP_006923431.1| - 1.1e-13 50.7 0.0 1.9e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|410671060|ref|YP_006923431.1| - 1.8e-09 37.0 1.0 6.8e-09 35.2 0.7 2.0 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|410671060|ref|YP_006923431.1| - 1.7e-05 24.2 0.3 5.4e-05 22.6 0.2 1.9 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|410671060|ref|YP_006923431.1| - 2.2e-05 23.9 0.5 9.6e-05 21.9 0.3 2.1 1 0 0 1 1 1 1 KH domain TIP49 PF06068.8 gi|410671060|ref|YP_006923431.1| - 0.00021 20.1 0.4 0.0037 16.0 0.0 2.5 2 0 0 2 2 2 1 TIP49 C-terminus AAA_17 PF13207.1 gi|410671060|ref|YP_006923431.1| - 0.00027 21.7 0.0 0.00099 19.9 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|410671060|ref|YP_006923431.1| - 0.00047 19.8 0.0 0.0013 18.4 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain KH_4 PF13083.1 gi|410671060|ref|YP_006923431.1| - 0.0013 18.3 0.1 0.0043 16.6 0.0 1.9 1 0 0 1 1 1 1 KH domain PIN PF01850.16 gi|410671060|ref|YP_006923431.1| - 0.0024 18.1 0.0 0.0065 16.7 0.0 1.8 1 1 0 1 1 1 1 PIN domain AAA_29 PF13555.1 gi|410671060|ref|YP_006923431.1| - 0.003 17.0 0.0 0.008 15.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|410671060|ref|YP_006923431.1| - 0.0035 16.7 0.0 0.0057 16.0 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein KaiC PF06745.8 gi|410671060|ref|YP_006923431.1| - 0.0045 16.1 0.0 0.025 13.7 0.0 2.1 2 0 0 2 2 2 1 KaiC NTPase_1 PF03266.10 gi|410671060|ref|YP_006923431.1| - 0.0083 15.8 0.0 0.023 14.4 0.0 1.8 1 0 0 1 1 1 1 NTPase AAA_16 PF13191.1 gi|410671060|ref|YP_006923431.1| - 0.012 15.6 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain UPF0079 PF02367.12 gi|410671060|ref|YP_006923431.1| - 0.012 15.2 0.0 0.062 12.9 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|410671060|ref|YP_006923431.1| - 0.013 15.3 0.0 0.026 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|410671060|ref|YP_006923431.1| - 0.017 14.2 0.0 0.033 13.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.9 gi|410671060|ref|YP_006923431.1| - 0.022 14.4 0.0 0.048 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|410671060|ref|YP_006923431.1| - 0.027 14.6 0.0 0.077 13.2 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|410671060|ref|YP_006923431.1| - 0.03 13.7 0.0 0.068 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|410671060|ref|YP_006923431.1| - 0.031 14.5 0.0 0.14 12.4 0.0 2.2 3 0 0 3 3 1 0 AAA domain RuvB_N PF05496.7 gi|410671060|ref|YP_006923431.1| - 0.048 12.7 0.0 0.16 11.0 0.0 1.8 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|410671060|ref|YP_006923431.1| - 0.057 13.5 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|410671060|ref|YP_006923431.1| - 0.069 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|410671060|ref|YP_006923431.1| - 0.081 12.5 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|410671060|ref|YP_006923431.1| - 0.089 13.0 0.0 0.24 11.7 0.0 1.8 1 0 0 1 1 1 0 ABC transporter AAA_30 PF13604.1 gi|410671060|ref|YP_006923431.1| - 0.091 12.3 0.0 0.24 10.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain PIN_4 PF13638.1 gi|410671060|ref|YP_006923431.1| - 0.11 12.5 0.0 0.35 10.9 0.0 1.9 1 0 0 1 1 1 0 PIN domain RNA_helicase PF00910.17 gi|410671060|ref|YP_006923431.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase PPV_E1_C PF00519.12 gi|410671060|ref|YP_006923431.1| - 0.11 11.0 0.0 0.17 10.4 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase AAA_23 PF13476.1 gi|410671060|ref|YP_006923431.1| - 0.11 12.7 0.2 0.43 10.8 0.0 2.0 3 0 0 3 3 1 0 AAA domain AAA_11 PF13086.1 gi|410671060|ref|YP_006923431.1| - 0.15 11.6 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain PRA-CH PF01502.13 gi|410671061|ref|YP_006923432.1| - 4.7e-38 128.6 1.1 6.3e-38 128.2 0.8 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Tropomodulin PF03250.9 gi|410671061|ref|YP_006923432.1| - 0.053 13.0 0.0 0.067 12.7 0.0 1.2 1 0 0 1 1 1 0 Tropomodulin KaiC PF06745.8 gi|410671062|ref|YP_006923433.1| - 7.5e-32 110.2 0.4 9.1e-32 110.0 0.3 1.1 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|410671062|ref|YP_006923433.1| - 1.3e-08 33.6 0.1 1.4e-07 30.2 0.1 2.0 1 1 0 1 1 1 1 GvpD gas vesicle protein MEDS PF14417.1 gi|410671062|ref|YP_006923433.1| - 8.3e-05 21.7 0.0 0.00013 21.1 0.0 1.3 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAXNEB PF05625.6 gi|410671062|ref|YP_006923433.1| - 0.00026 19.9 0.9 0.0095 14.8 0.1 2.1 2 0 0 2 2 2 2 PAXNEB protein PepSY PF03413.14 gi|410671063|ref|YP_006923434.1| - 0.03 14.9 0.0 0.18 12.4 0.0 2.2 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Fe-S_biosyn PF01521.15 gi|410671064|ref|YP_006923435.1| - 3.2e-12 46.3 0.1 3.9e-12 46.0 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Peptidase_M17 PF00883.16 gi|410671064|ref|YP_006923435.1| - 0.048 12.5 0.0 0.049 12.5 0.0 1.1 1 0 0 1 1 1 0 Cytosol aminopeptidase family, catalytic domain NAC PF01849.13 gi|410671065|ref|YP_006923436.1| - 1.5e-17 62.8 2.5 1.5e-17 62.8 1.7 1.5 2 0 0 2 2 2 1 NAC domain UBA PF00627.26 gi|410671065|ref|YP_006923436.1| - 1.1e-05 25.0 2.2 0.00014 21.5 0.0 2.7 3 0 0 3 3 3 1 UBA/TS-N domain Sigma70_r3 PF04539.11 gi|410671065|ref|YP_006923436.1| - 0.00034 20.4 2.9 0.064 13.1 0.2 3.2 2 2 1 3 3 3 2 Sigma-70 region 3 UBA_4 PF14555.1 gi|410671065|ref|YP_006923436.1| - 0.0007 19.0 0.1 0.0034 16.8 0.0 2.1 3 0 0 3 3 3 1 UBA-like domain DUF3867 PF12983.2 gi|410671065|ref|YP_006923436.1| - 0.0044 17.0 0.1 0.0054 16.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3867) DUF3562 PF12085.3 gi|410671065|ref|YP_006923436.1| - 0.0045 16.7 0.5 0.41 10.5 0.1 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF3562) Peptidase_S49 PF01343.13 gi|410671065|ref|YP_006923436.1| - 0.017 14.8 0.5 0.03 14.1 0.3 1.4 1 1 0 1 1 1 0 Peptidase family S49 Death PF00531.17 gi|410671065|ref|YP_006923436.1| - 0.087 12.6 0.0 8.7 6.1 0.0 2.1 2 0 0 2 2 2 0 Death domain AMP-binding PF00501.23 gi|410671067|ref|YP_006923438.1| - 1.6e-97 326.5 0.4 2.4e-97 325.9 0.0 1.4 2 0 0 2 2 2 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|410671067|ref|YP_006923438.1| - 1.3e-21 77.2 0.0 2.9e-21 76.1 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain RVT_3 PF13456.1 gi|410671068|ref|YP_006923439.1| - 7.1e-15 54.5 0.0 1.2e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|410671068|ref|YP_006923439.1| - 3.4e-09 37.1 0.0 5.9e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 RNase H QRPTase_C PF01729.14 gi|410671069|ref|YP_006923440.1| - 4.8e-25 88.0 0.0 8e-25 87.3 0.0 1.4 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|410671069|ref|YP_006923440.1| - 4.9e-13 48.6 0.0 7.5e-13 48.1 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Thioredoxin PF00085.15 gi|410671070|ref|YP_006923441.1| - 2.9e-13 49.3 0.2 3.1e-13 49.3 0.1 1.0 1 0 0 1 1 1 1 Thioredoxin KaiB PF07689.7 gi|410671070|ref|YP_006923441.1| - 4.5e-08 32.4 0.1 5e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 KaiB domain Thioredoxin_3 PF13192.1 gi|410671070|ref|YP_006923441.1| - 4.8e-06 26.3 0.1 5.4e-06 26.1 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_2 PF13098.1 gi|410671070|ref|YP_006923441.1| - 6.8e-06 26.2 0.1 9.5e-06 25.7 0.1 1.3 1 1 0 1 1 1 1 Thioredoxin-like domain HyaE PF07449.6 gi|410671070|ref|YP_006923441.1| - 7.7e-05 22.5 0.0 0.00012 21.9 0.0 1.3 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_9 PF14595.1 gi|410671070|ref|YP_006923441.1| - 0.00046 19.7 0.0 0.00047 19.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|410671070|ref|YP_006923441.1| - 0.0005 20.1 0.1 0.00087 19.3 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like DUF836 PF05768.9 gi|410671070|ref|YP_006923441.1| - 0.0011 19.2 0.0 0.0011 19.2 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) ABC_transp_aux PF09822.4 gi|410671070|ref|YP_006923441.1| - 0.0014 18.1 0.0 0.0014 18.1 0.0 1.0 1 0 0 1 1 1 1 ABC-type uncharacterized transport system Thioredoxin_6 PF13848.1 gi|410671070|ref|YP_006923441.1| - 0.0042 16.9 0.0 0.0043 16.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain Glutaredoxin PF00462.19 gi|410671070|ref|YP_006923441.1| - 0.0056 16.6 0.1 0.0084 16.0 0.1 1.4 1 0 0 1 1 1 1 Glutaredoxin TrbC_Ftype PF09673.5 gi|410671070|ref|YP_006923441.1| - 0.0079 15.7 0.0 0.0079 15.7 0.0 1.1 1 0 0 1 1 1 1 Type-F conjugative transfer system pilin assembly protein Calsequestrin PF01216.12 gi|410671070|ref|YP_006923441.1| - 0.011 14.5 0.2 0.011 14.5 0.1 1.0 1 0 0 1 1 1 0 Calsequestrin DSBA PF01323.15 gi|410671070|ref|YP_006923441.1| - 0.065 12.7 0.0 0.065 12.7 0.0 1.1 1 0 0 1 1 1 0 DSBA-like thioredoxin domain TRAM PF01938.15 gi|410671070|ref|YP_006923441.1| - 0.11 12.2 0.5 0.27 11.0 0.1 1.8 2 0 0 2 2 2 0 TRAM domain Thioredoxin_4 PF13462.1 gi|410671070|ref|YP_006923441.1| - 0.12 12.4 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin BPL_C PF02237.12 gi|410671070|ref|YP_006923441.1| - 0.21 11.3 0.8 0.89 9.2 0.1 1.9 2 0 0 2 2 2 0 Biotin protein ligase C terminal domain Lactamase_B_2 PF12706.2 gi|410671071|ref|YP_006923442.1| - 6.5e-10 38.8 0.1 1.2e-09 38.0 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|410671071|ref|YP_006923442.1| - 9.3e-05 22.1 2.1 0.00013 21.6 0.1 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|410671071|ref|YP_006923442.1| - 0.00076 19.2 0.4 0.0023 17.6 0.1 1.9 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Rab5ip PF07019.7 gi|410671072|ref|YP_006923443.1| - 0.0088 16.1 4.3 0.015 15.3 3.0 1.3 1 0 0 1 1 1 1 Rab5-interacting protein (Rab5ip) DUF4134 PF13572.1 gi|410671072|ref|YP_006923443.1| - 0.032 14.3 0.6 0.046 13.8 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4134) ABC_tran PF00005.22 gi|410671073|ref|YP_006923444.1| - 9.5e-40 136.0 0.0 9.5e-22 77.7 0.0 2.7 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|410671073|ref|YP_006923444.1| - 2.5e-16 60.5 0.3 0.0012 18.8 0.0 4.2 3 1 1 4 4 4 3 AAA domain SMC_N PF02463.14 gi|410671073|ref|YP_006923444.1| - 6.3e-14 51.7 6.2 6.9e-05 22.1 0.0 4.4 5 0 0 5 5 4 3 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|410671073|ref|YP_006923444.1| - 6.4e-13 48.0 3.2 1.2e-12 47.1 2.2 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.22 gi|410671073|ref|YP_006923444.1| - 1.2e-07 31.0 4.5 1.2e-07 31.0 3.1 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_25 PF13481.1 gi|410671073|ref|YP_006923444.1| - 1.7e-06 27.5 1.1 0.081 12.3 0.0 3.6 4 0 0 4 4 4 2 AAA domain AAA_29 PF13555.1 gi|410671073|ref|YP_006923444.1| - 1.6e-05 24.3 1.5 0.074 12.5 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|410671073|ref|YP_006923444.1| - 2.2e-05 24.8 0.8 0.08 13.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|410671073|ref|YP_006923444.1| - 3.6e-05 24.5 0.6 0.036 14.8 0.0 3.0 2 2 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|410671073|ref|YP_006923444.1| - 4.1e-05 22.4 0.0 0.14 10.8 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|410671073|ref|YP_006923444.1| - 6.5e-05 22.1 4.6 0.032 13.4 0.0 3.2 3 0 0 3 3 3 2 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|410671073|ref|YP_006923444.1| - 0.00012 22.1 0.0 0.62 10.2 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Fer4_7 PF12838.2 gi|410671073|ref|YP_006923444.1| - 0.00018 21.8 7.8 0.00049 20.4 5.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410671073|ref|YP_006923444.1| - 0.00034 20.3 12.3 0.001 18.8 2.2 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|410671073|ref|YP_006923444.1| - 0.00057 19.6 6.0 0.0011 18.8 4.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_16 PF13191.1 gi|410671073|ref|YP_006923444.1| - 0.0019 18.2 0.3 2.5 8.0 0.1 2.6 2 1 0 2 2 2 2 AAA ATPase domain Fer4_10 PF13237.1 gi|410671073|ref|YP_006923444.1| - 0.0021 17.8 10.6 0.012 15.3 7.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain SbcCD_C PF13558.1 gi|410671073|ref|YP_006923444.1| - 0.0025 17.6 0.0 1.7 8.5 0.0 2.8 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Fer4_9 PF13187.1 gi|410671073|ref|YP_006923444.1| - 0.0026 17.9 8.4 0.0058 16.8 5.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain VirE PF05272.6 gi|410671073|ref|YP_006923444.1| - 0.003 17.0 0.0 0.55 9.6 0.0 2.3 2 0 0 2 2 2 1 Virulence-associated protein E NACHT PF05729.7 gi|410671073|ref|YP_006923444.1| - 0.0034 17.0 0.4 0.74 9.4 0.0 2.4 2 0 0 2 2 2 1 NACHT domain AAA PF00004.24 gi|410671073|ref|YP_006923444.1| - 0.0035 17.5 0.0 0.61 10.2 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|410671073|ref|YP_006923444.1| - 0.0036 17.4 0.7 1.2 9.3 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_15 PF13175.1 gi|410671073|ref|YP_006923444.1| - 0.0075 15.3 0.0 0.92 8.4 0.0 2.7 3 0 0 3 3 3 1 AAA ATPase domain AAA_14 PF13173.1 gi|410671073|ref|YP_006923444.1| - 0.009 15.9 0.3 3.2 7.6 0.0 3.2 3 0 0 3 3 3 1 AAA domain Fer4_2 PF12797.2 gi|410671073|ref|YP_006923444.1| - 0.0098 15.7 2.8 0.0098 15.7 2.0 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain ArgK PF03308.11 gi|410671073|ref|YP_006923444.1| - 0.01 14.5 1.0 1.1 7.9 0.0 2.2 2 0 0 2 2 2 0 ArgK protein MobB PF03205.9 gi|410671073|ref|YP_006923444.1| - 0.016 14.9 0.6 0.51 10.0 0.0 2.7 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|410671073|ref|YP_006923444.1| - 0.02 15.1 0.2 11 6.2 0.0 3.0 2 1 0 2 2 2 0 AAA domain Miro PF08477.8 gi|410671073|ref|YP_006923444.1| - 0.021 15.2 0.2 0.45 11.0 0.0 2.5 3 0 0 3 3 2 0 Miro-like protein AAA_5 PF07728.9 gi|410671073|ref|YP_006923444.1| - 0.025 14.3 0.5 14 5.4 0.0 3.2 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) DUF87 PF01935.12 gi|410671073|ref|YP_006923444.1| - 0.027 14.3 0.0 10 5.8 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|410671073|ref|YP_006923444.1| - 0.029 13.8 2.9 2 7.7 0.1 3.0 2 1 1 3 3 3 0 AAA-like domain AAA_33 PF13671.1 gi|410671073|ref|YP_006923444.1| - 0.037 13.8 0.4 2.1 8.2 0.0 2.9 3 0 0 3 3 2 0 AAA domain AAA_24 PF13479.1 gi|410671073|ref|YP_006923444.1| - 0.045 13.3 0.3 11 5.5 0.0 2.6 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|410671073|ref|YP_006923444.1| - 0.051 13.2 1.0 4.8 6.8 0.0 2.8 3 0 0 3 3 2 0 NTPase Fer4_16 PF13484.1 gi|410671073|ref|YP_006923444.1| - 0.075 13.7 0.4 0.075 13.7 0.2 2.2 2 0 0 2 2 1 0 4Fe-4S double cluster binding domain NB-ARC PF00931.17 gi|410671073|ref|YP_006923444.1| - 0.25 10.1 0.8 1.7 7.4 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain Fer4_8 PF13183.1 gi|410671073|ref|YP_006923444.1| - 0.35 10.9 7.1 0.17 11.9 1.0 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410671073|ref|YP_006923444.1| - 1.5 9.3 13.2 0.27 11.6 1.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|410671073|ref|YP_006923444.1| - 1.7 9.4 14.3 0.091 13.3 3.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|410671073|ref|YP_006923444.1| - 2.1 8.8 10.7 0.18 12.2 3.2 2.2 1 1 0 2 2 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|410671073|ref|YP_006923444.1| - 9.3 6.9 9.9 1.9 9.1 1.0 3.3 3 0 0 3 3 3 0 4Fe-4S single cluster domain Rubrerythrin PF02915.12 gi|410671074|ref|YP_006923445.1| - 2.2e-06 28.0 1.3 2.5e-06 27.8 0.9 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|410671074|ref|YP_006923445.1| - 0.00047 20.3 0.4 0.00061 20.0 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) COQ7 PF03232.8 gi|410671074|ref|YP_006923445.1| - 0.0097 15.4 0.2 0.012 15.1 0.1 1.2 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Ferritin_2 PF13668.1 gi|410671074|ref|YP_006923445.1| - 0.011 15.6 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 Ferritin-like domain Elf-1_N PF12310.3 gi|410671074|ref|YP_006923445.1| - 0.017 15.0 1.1 0.021 14.7 0.8 1.1 1 0 0 1 1 1 0 Transcription factor protein N terminal DUF892 PF05974.7 gi|410671074|ref|YP_006923445.1| - 0.03 14.1 3.4 0.032 14.0 2.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF892) Rubrerythrin PF02915.12 gi|410671075|ref|YP_006923446.1| - 2.9e-07 30.8 0.2 3.4e-07 30.6 0.1 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|410671075|ref|YP_006923446.1| - 0.0082 16.0 0.0 0.0097 15.8 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2202 PF09968.4 gi|410671075|ref|YP_006923446.1| - 0.032 13.8 0.4 0.036 13.7 0.3 1.1 1 0 0 1 1 1 0 Uncharacterized protein domain (DUF2202) COQ7 PF03232.8 gi|410671075|ref|YP_006923446.1| - 0.033 13.6 0.2 0.039 13.4 0.1 1.1 1 0 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 DUF2383 PF09537.5 gi|410671075|ref|YP_006923446.1| - 0.081 13.1 0.1 0.11 12.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) DUF4142 PF13628.1 gi|410671075|ref|YP_006923446.1| - 0.092 12.7 0.2 0.14 12.2 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4142) Baculo_11_kDa PF06143.6 gi|410671076|ref|YP_006923447.1| - 0.019 14.3 0.5 0.02 14.2 0.3 1.0 1 0 0 1 1 1 0 Baculovirus 11 kDa family DUF4234 PF14018.1 gi|410671076|ref|YP_006923447.1| - 0.11 12.2 2.3 0.12 12.1 1.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4234) Tic20 PF09685.5 gi|410671076|ref|YP_006923447.1| - 0.16 11.9 3.1 0.17 11.8 2.2 1.0 1 0 0 1 1 1 0 Tic20-like protein N_methyl PF07963.7 gi|410671076|ref|YP_006923447.1| - 0.74 9.6 5.3 1.2 8.9 1.2 2.2 2 0 0 2 2 2 0 Prokaryotic N-terminal methylation motif DUF373 PF04123.8 gi|410671077|ref|YP_006923448.1| - 2.4 7.0 5.5 2.8 6.8 3.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF3784 PF12650.2 gi|410671077|ref|YP_006923448.1| - 9.4 6.2 14.4 20 5.1 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3784) DUF11 PF01345.13 gi|410671078|ref|YP_006923449.1| - 3.4e-05 23.8 8.0 0.0012 18.8 0.1 3.6 4 0 0 4 4 4 2 Domain of unknown function DUF11 CARDB PF07705.6 gi|410671078|ref|YP_006923449.1| - 0.00056 19.9 4.6 2.1 8.4 0.1 4.2 4 1 0 4 4 4 2 CARDB TRAP_beta PF05753.9 gi|410671078|ref|YP_006923449.1| - 0.00065 18.9 1.0 0.11 11.6 0.1 2.9 2 1 1 3 3 3 2 Translocon-associated protein beta (TRAPB) DUF4139 PF13598.1 gi|410671078|ref|YP_006923449.1| - 0.048 12.9 0.0 16 4.6 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4139) ABC2_membrane_3 PF12698.2 gi|410671079|ref|YP_006923450.1| - 1.4e-19 70.3 16.8 3.3e-19 69.1 11.8 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|410671079|ref|YP_006923450.1| - 1.4e-15 56.9 6.9 3.5e-15 55.6 4.8 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|410671079|ref|YP_006923450.1| - 9.6e-13 47.8 3.4 2.8e-12 46.3 2.6 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|410671080|ref|YP_006923451.1| - 3.2e-10 39.5 30.4 3.2e-10 39.5 21.1 2.9 1 1 3 4 4 4 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|410671080|ref|YP_006923451.1| - 5.7e-08 32.2 24.6 5.7e-08 32.2 17.0 3.3 1 1 2 3 3 3 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|410671082|ref|YP_006923453.1| - 6.1e-29 101.0 0.0 1.5e-28 99.7 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|410671082|ref|YP_006923453.1| - 1.2e-15 58.2 0.2 1.7e-12 47.9 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|410671082|ref|YP_006923453.1| - 9.3e-06 26.1 2.4 2.8e-05 24.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain DUF4162 PF13732.1 gi|410671082|ref|YP_006923453.1| - 0.00011 22.6 0.0 0.00021 21.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) MobB PF03205.9 gi|410671082|ref|YP_006923453.1| - 0.004 16.8 0.2 0.008 15.8 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|410671082|ref|YP_006923453.1| - 0.0056 16.2 0.0 0.061 12.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|410671082|ref|YP_006923453.1| - 0.013 15.0 0.8 0.025 14.0 0.1 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain SRP54 PF00448.17 gi|410671082|ref|YP_006923453.1| - 0.013 14.8 0.1 0.027 13.9 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_15 PF13175.1 gi|410671082|ref|YP_006923453.1| - 0.024 13.7 0.0 0.045 12.7 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.14 gi|410671082|ref|YP_006923453.1| - 0.053 12.7 0.2 1.8 7.7 0.1 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ATP-synt_ab PF00006.20 gi|410671082|ref|YP_006923453.1| - 0.058 12.8 0.0 0.095 12.1 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_17 PF13207.1 gi|410671082|ref|YP_006923453.1| - 0.1 13.4 0.5 0.1 13.4 0.4 2.4 2 2 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|410671082|ref|YP_006923453.1| - 0.1 11.7 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|410671082|ref|YP_006923453.1| - 0.13 11.7 0.3 0.41 10.0 0.1 1.8 2 1 1 3 3 3 0 AAA-like domain PhoH PF02562.11 gi|410671082|ref|YP_006923453.1| - 0.16 11.1 0.7 0.55 9.4 0.0 2.2 3 1 0 3 3 3 0 PhoH-like protein AAA_22 PF13401.1 gi|410671082|ref|YP_006923453.1| - 0.23 11.5 1.1 0.64 10.1 0.2 2.0 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|410671082|ref|YP_006923453.1| - 0.33 10.0 1.0 0.46 9.5 0.1 1.6 2 0 0 2 2 2 0 Zeta toxin MarR_2 PF12802.2 gi|410671083|ref|YP_006923454.1| - 2.6e-12 46.2 0.0 4.5e-12 45.4 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|410671083|ref|YP_006923454.1| - 4.1e-12 45.6 0.0 7.2e-12 44.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|410671083|ref|YP_006923454.1| - 6.3e-07 29.6 0.0 1e-06 28.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|410671083|ref|YP_006923454.1| - 0.0012 18.4 0.0 0.0031 17.1 0.0 1.7 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_24 PF13412.1 gi|410671083|ref|YP_006923454.1| - 0.0038 16.5 0.0 0.006 15.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|410671083|ref|YP_006923454.1| - 0.0067 16.5 0.0 0.083 13.0 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|410671083|ref|YP_006923454.1| - 0.012 15.2 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_29 PF13551.1 gi|410671083|ref|YP_006923454.1| - 0.012 15.7 0.0 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix TrmB PF01978.14 gi|410671083|ref|YP_006923454.1| - 0.028 14.1 0.0 0.042 13.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|410671083|ref|YP_006923454.1| - 0.031 14.1 0.0 0.055 13.4 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF3116 PF11313.3 gi|410671083|ref|YP_006923454.1| - 0.054 13.0 0.1 0.13 11.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3116) HTH_34 PF13601.1 gi|410671083|ref|YP_006923454.1| - 0.14 12.2 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MatE PF01554.13 gi|410671084|ref|YP_006923455.1| - 6.6e-53 178.6 45.7 1e-30 106.4 9.3 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|410671084|ref|YP_006923455.1| - 4e-16 59.1 20.8 1.3e-14 54.2 1.7 4.7 3 2 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain DUF772 PF05598.6 gi|410671085|ref|YP_006923456.1| - 9.6e-21 73.4 0.0 1.4e-20 72.9 0.0 1.3 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|410671085|ref|YP_006923456.1| - 2.3e-10 40.3 0.5 6.1e-10 38.9 0.3 1.8 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|410671085|ref|YP_006923456.1| - 0.00037 20.1 0.1 0.00069 19.2 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|410671085|ref|YP_006923456.1| - 0.00044 20.0 0.1 0.00075 19.2 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF3693 PF12472.3 gi|410671085|ref|YP_006923456.1| - 0.12 11.9 0.1 0.27 10.8 0.1 1.5 1 0 0 1 1 1 0 Phage related protein CbiZ PF01955.13 gi|410671086|ref|YP_006923457.1| - 2.2e-52 177.6 0.2 2.8e-52 177.2 0.2 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase AP_endonuc_2 PF01261.19 gi|410671087|ref|YP_006923458.1| - 1.4e-08 34.2 0.1 1.9e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HTH_20 PF12840.2 gi|410671088|ref|YP_006923460.1| - 0.00027 20.6 0.2 0.00048 19.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|410671088|ref|YP_006923460.1| - 0.00041 19.9 0.0 0.00064 19.3 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|410671088|ref|YP_006923460.1| - 0.00056 19.5 0.2 0.00082 18.9 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|410671088|ref|YP_006923460.1| - 0.011 15.4 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF4430 PF14478.1 gi|410671088|ref|YP_006923460.1| - 0.015 15.3 0.8 0.027 14.5 0.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4430) HxlR PF01638.12 gi|410671088|ref|YP_006923460.1| - 0.034 13.7 0.1 0.061 12.9 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Radical_SAM PF04055.16 gi|410671090|ref|YP_006923461.1| - 4.2e-09 36.8 0.0 8.1e-09 35.8 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily HHH PF00633.18 gi|410671090|ref|YP_006923461.1| - 1.9e-07 30.3 0.0 4.3e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|410671090|ref|YP_006923461.1| - 2e-07 30.8 0.0 4.9e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|410671090|ref|YP_006923461.1| - 0.0068 16.5 0.0 0.016 15.3 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain Fer4_12 PF13353.1 gi|410671090|ref|YP_006923461.1| - 0.074 13.1 0.1 0.13 12.4 0.1 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF3878 PF12994.2 gi|410671090|ref|YP_006923461.1| - 0.078 12.1 0.0 0.26 10.4 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function, E. rectale Gene description (DUF3878) HHH_2 PF12826.2 gi|410671090|ref|YP_006923461.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF4130 PF13566.1 gi|410671091|ref|YP_006923462.1| - 5.7e-07 29.2 0.0 9.6e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4130 MutS_V PF00488.16 gi|410671092|ref|YP_006923463.1| - 2.2e-14 53.4 0.1 5.1e-14 52.2 0.0 1.6 2 0 0 2 2 2 1 MutS domain V HHH_2 PF12826.2 gi|410671092|ref|YP_006923463.1| - 0.0016 18.2 0.1 0.0049 16.7 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif AAA PF00004.24 gi|410671092|ref|YP_006923463.1| - 0.0081 16.3 1.4 0.021 15.0 0.1 2.4 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) HHH_5 PF14520.1 gi|410671092|ref|YP_006923463.1| - 0.0084 16.2 0.0 0.031 14.4 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_14 PF13173.1 gi|410671092|ref|YP_006923463.1| - 0.021 14.7 0.0 0.079 12.8 0.0 2.1 1 1 0 1 1 1 0 AAA domain IGPD PF00475.13 gi|410671093|ref|YP_006923464.1| - 3.3e-64 215.1 2.5 4.1e-64 214.8 1.7 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.16 gi|410671094|ref|YP_006923465.1| - 3.9e-77 258.5 1.1 4.4e-77 258.4 0.8 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|410671094|ref|YP_006923465.1| - 1.4e-07 30.8 1.0 2.1e-05 23.6 0.2 2.2 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|410671094|ref|YP_006923465.1| - 1.8e-07 30.6 0.8 9.5e-05 21.7 0.0 2.1 2 0 0 2 2 2 2 PcrB family Dus PF01207.12 gi|410671094|ref|YP_006923465.1| - 3.6e-07 29.3 0.2 0.0083 14.9 0.0 2.2 1 1 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|410671094|ref|YP_006923465.1| - 8.7e-05 21.7 0.9 0.14 11.2 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|410671094|ref|YP_006923465.1| - 0.00012 21.3 3.0 0.00017 20.8 0.4 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|410671094|ref|YP_006923465.1| - 0.00051 18.9 2.1 0.18 10.6 0.1 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase DUF561 PF04481.7 gi|410671094|ref|YP_006923465.1| - 0.0012 17.8 0.3 0.002 17.1 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF561) TMP-TENI PF02581.12 gi|410671094|ref|YP_006923465.1| - 0.0013 17.8 1.7 0.0094 15.0 0.1 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI IMPDH PF00478.20 gi|410671094|ref|YP_006923465.1| - 0.0016 17.4 1.6 0.067 12.0 0.2 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain NanE PF04131.9 gi|410671094|ref|YP_006923465.1| - 0.0023 16.9 0.2 0.92 8.4 0.1 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.16 gi|410671094|ref|YP_006923465.1| - 0.006 15.6 0.2 0.015 14.3 0.1 1.7 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase ADH_zinc_N PF00107.21 gi|410671094|ref|YP_006923465.1| - 0.015 14.8 0.2 0.065 12.7 0.0 1.9 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Trp_syntA PF00290.15 gi|410671094|ref|YP_006923465.1| - 0.036 12.5 0.5 1.2 7.6 0.1 2.2 2 0 0 2 2 2 0 Tryptophan synthase alpha chain HisG PF01634.13 gi|410671095|ref|YP_006923466.1| - 3.9e-53 179.3 0.9 5.6e-53 178.8 0.6 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|410671095|ref|YP_006923466.1| - 8.4e-27 92.9 1.1 2e-26 91.7 0.5 1.8 2 0 0 2 2 2 1 HisG, C-terminal domain SBP_bac_3 PF00497.15 gi|410671095|ref|YP_006923466.1| - 0.0037 16.5 0.1 0.0068 15.6 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|410671095|ref|YP_006923466.1| - 0.0062 16.1 0.1 3.5 7.1 0.0 2.4 1 1 1 2 2 2 2 NMT1/THI5 like AdoMet_Synthase PF01941.14 gi|410671097|ref|YP_006923468.1| - 4.7e-179 594.9 1.8 5.3e-179 594.8 1.3 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) DDE_3 PF13358.1 gi|410671098|ref|YP_006923469.1| - 2.8e-23 82.2 0.1 3.9e-23 81.8 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|410671098|ref|YP_006923469.1| - 1.2e-09 38.2 0.0 2.1e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|410671098|ref|YP_006923469.1| - 9.1e-09 34.7 0.2 1.1e-08 34.5 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|410671098|ref|YP_006923469.1| - 0.009 14.7 0.0 0.01 14.6 0.0 1.2 1 0 0 1 1 1 1 Rhodopirellula transposase DDE domain DUF3800 PF12686.2 gi|410671098|ref|YP_006923469.1| - 0.047 13.3 0.0 0.057 13.0 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) Ribosomal_S2 PF00318.15 gi|410671098|ref|YP_006923469.1| - 0.05 12.8 3.3 0.58 9.3 2.3 2.0 1 1 0 1 1 1 0 Ribosomal protein S2 HTH_29 PF13551.1 gi|410671099|ref|YP_006923470.1| - 7.1e-17 61.5 0.0 1.1e-16 60.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410671099|ref|YP_006923470.1| - 1e-10 42.2 0.3 2.2e-10 41.2 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|410671099|ref|YP_006923470.1| - 5.9e-09 35.3 0.4 1.2e-08 34.3 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|410671099|ref|YP_006923470.1| - 8.3e-07 28.4 0.1 3.1e-06 26.6 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|410671099|ref|YP_006923470.1| - 8.2e-06 25.7 0.0 2e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_21 PF13276.1 gi|410671099|ref|YP_006923470.1| - 0.031 14.2 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 HTH-like domain DUF1129 PF06570.6 gi|410671100|ref|YP_006923471.1| - 0.17 11.1 3.9 2.1 7.6 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) YfzA PF14118.1 gi|410671100|ref|YP_006923471.1| - 0.66 10.1 5.8 0.48 10.5 1.0 2.6 2 1 1 3 3 3 0 YfzA-like protein DUF4177 PF13783.1 gi|410671101|ref|YP_006923472.1| - 6.6e-09 35.2 1.5 1.1e-08 34.5 1.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4177) Sulfate_transp PF00916.15 gi|410671102|ref|YP_006923473.1| - 0.055 12.4 2.6 0.054 12.4 1.8 1.0 1 0 0 1 1 1 0 Sulfate transporter family NhaB PF06450.7 gi|410671102|ref|YP_006923473.1| - 0.12 10.9 2.3 0.12 10.9 1.6 1.0 1 0 0 1 1 1 0 Bacterial Na+/H+ antiporter B (NhaB) EIAV_GP90 PF00971.13 gi|410671102|ref|YP_006923473.1| - 0.27 9.6 1.3 0.29 9.5 0.9 1.0 1 0 0 1 1 1 0 EIAV coat protein, gp90 Halogen_Hydrol PF10112.4 gi|410671102|ref|YP_006923473.1| - 1.6 8.0 4.3 1.7 8.0 3.0 1.1 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF2154 PF09922.4 gi|410671103|ref|YP_006923474.1| - 3.2e-10 39.7 0.6 4.9e-10 39.1 0.4 1.3 1 0 0 1 1 1 1 Cell wall-active antibiotics response protein (DUF2154) AHSA1 PF08327.6 gi|410671104|ref|YP_006923475.1| - 4.6e-09 36.4 0.9 5.7e-09 36.1 0.6 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.4 gi|410671104|ref|YP_006923475.1| - 0.0059 16.7 0.1 0.02 15.0 0.1 1.8 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF1724 PF08350.5 gi|410671105|ref|YP_006923476.1| - 1.7e-16 59.4 0.1 3.3e-16 58.5 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) DUF1724 PF08350.5 gi|410671108|ref|YP_006923479.1| - 2.3e-10 39.8 0.0 5.2e-10 38.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) Rsbr_N PF08678.5 gi|410671109|ref|YP_006923480.1| - 0.032 14.0 0.1 0.034 14.0 0.0 1.2 1 0 0 1 1 1 0 Rsbr N terminal Peptidase_M24 PF00557.19 gi|410671111|ref|YP_006923482.1| - 7.8e-44 149.7 1.0 1.1e-43 149.2 0.7 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.19 gi|410671112|ref|YP_006923483.1| - 1.6e-44 151.9 0.0 1.8e-44 151.7 0.0 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 Neil1-DNA_bind PF09292.5 gi|410671113|ref|YP_006923484.1| - 0.047 13.5 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 Endonuclease VIII-like 1, DNA bind DUF1805 PF08827.6 gi|410671114|ref|YP_006923485.1| - 5.8e-24 83.6 0.7 8.6e-24 83.1 0.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) UPF0020 PF01170.13 gi|410671115|ref|YP_006923486.1| - 5.6e-32 110.7 0.0 7.9e-32 110.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|410671115|ref|YP_006923486.1| - 5.8e-12 45.6 0.1 6.8e-11 42.2 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain THUMP PF02926.12 gi|410671115|ref|YP_006923486.1| - 1.1e-07 31.8 0.0 1.8e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 THUMP domain N6_N4_Mtase PF01555.13 gi|410671115|ref|YP_006923486.1| - 3.1e-06 26.8 0.0 0.035 13.5 0.0 2.1 2 0 0 2 2 2 2 DNA methylase N6_Mtase PF02384.11 gi|410671115|ref|YP_006923486.1| - 8e-06 25.1 0.0 1.2e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_11 PF08241.7 gi|410671115|ref|YP_006923486.1| - 9.7e-05 22.7 0.0 0.00023 21.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|410671115|ref|YP_006923486.1| - 0.00022 20.6 0.0 0.00033 20.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 DUF45 PF01863.12 gi|410671116|ref|YP_006923487.1| - 7.7e-33 114.0 2.0 1.2e-29 103.6 0.3 2.0 1 1 1 2 2 2 2 Protein of unknown function DUF45 SprT-like PF10263.4 gi|410671116|ref|YP_006923487.1| - 5.5e-05 22.8 0.1 8.8e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 SprT-like family WLM PF08325.5 gi|410671116|ref|YP_006923487.1| - 0.0014 18.5 0.8 0.0021 17.9 0.6 1.2 1 0 0 1 1 1 1 WLM domain PseudoU_synth_1 PF01416.15 gi|410671117|ref|YP_006923488.1| - 9.4e-33 112.7 0.0 5.5e-20 71.7 0.0 2.3 2 0 0 2 2 2 2 tRNA pseudouridine synthase HTH_20 PF12840.2 gi|410671118|ref|YP_006923489.1| - 7.3e-10 38.5 0.0 1.5e-09 37.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|410671118|ref|YP_006923489.1| - 3.8e-05 23.0 0.0 8.3e-05 21.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF742 PF05331.6 gi|410671118|ref|YP_006923489.1| - 0.00067 19.2 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF742) TFIIE_alpha PF02002.12 gi|410671118|ref|YP_006923489.1| - 0.00067 19.1 0.5 0.001 18.5 0.4 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|410671118|ref|YP_006923489.1| - 0.0015 18.1 0.1 0.0029 17.2 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|410671118|ref|YP_006923489.1| - 0.0021 17.6 0.0 0.0052 16.3 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|410671118|ref|YP_006923489.1| - 0.014 15.0 0.0 0.041 13.5 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|410671118|ref|YP_006923489.1| - 0.032 14.5 0.1 0.065 13.5 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|410671118|ref|YP_006923489.1| - 0.042 13.5 0.0 0.085 12.5 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF1297 PF06973.7 gi|410671119|ref|YP_006923490.1| - 2.4e-65 219.3 0.0 3.5e-65 218.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|410671119|ref|YP_006923490.1| - 6.6e-45 151.8 0.0 1.1e-44 151.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|410671119|ref|YP_006923490.1| - 2.8e-05 23.9 0.0 0.018 14.8 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|410671119|ref|YP_006923490.1| - 9.6e-05 22.3 0.1 0.00057 19.7 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|410671119|ref|YP_006923490.1| - 0.074 12.3 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Pyr_redox_2 PF07992.9 gi|410671120|ref|YP_006923491.1| - 3.1e-14 53.3 0.0 4.6e-06 26.6 0.0 3.3 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|410671120|ref|YP_006923491.1| - 1.4e-12 47.2 0.5 3.8e-06 26.0 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|410671120|ref|YP_006923491.1| - 1.4e-12 47.2 0.7 1.5e-06 27.3 0.3 3.1 3 0 0 3 3 3 2 FAD binding domain GIDA PF01134.17 gi|410671120|ref|YP_006923491.1| - 8.4e-12 44.6 0.3 0.00047 19.1 0.2 3.1 3 0 0 3 3 3 3 Glucose inhibited division protein A HI0933_like PF03486.9 gi|410671120|ref|YP_006923491.1| - 2.6e-09 36.0 0.0 1.1e-06 27.3 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|410671120|ref|YP_006923491.1| - 1.7e-07 30.6 0.0 3.2e-06 26.4 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|410671120|ref|YP_006923491.1| - 3.3e-07 30.2 0.3 2.9e-05 23.9 0.1 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|410671120|ref|YP_006923491.1| - 5.5e-06 25.6 0.4 7.3e-05 21.9 0.1 2.2 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|410671120|ref|YP_006923491.1| - 2.8e-05 23.4 0.6 0.0008 18.6 0.4 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|410671120|ref|YP_006923491.1| - 8.4e-05 21.6 0.1 0.00047 19.1 0.1 1.9 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|410671120|ref|YP_006923491.1| - 0.00013 22.3 0.1 0.59 10.5 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|410671120|ref|YP_006923491.1| - 0.00033 20.7 0.1 0.0014 18.7 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|410671120|ref|YP_006923491.1| - 0.034 13.9 0.1 0.073 12.8 0.0 1.6 1 0 0 1 1 1 0 ThiF family NAD_binding_9 PF13454.1 gi|410671120|ref|YP_006923491.1| - 0.066 12.9 0.1 2 8.1 0.1 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding TMP-TENI PF02581.12 gi|410671120|ref|YP_006923491.1| - 0.098 11.7 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI DUF98 PF01947.11 gi|410671121|ref|YP_006923492.1| - 0.09 12.5 0.0 0.09 12.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF98) AAA_10 PF12846.2 gi|410671123|ref|YP_006923494.1| - 2.2e-14 53.6 0.0 1.3e-13 51.0 0.0 1.9 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|410671123|ref|YP_006923494.1| - 5.1e-11 42.8 0.0 8.2e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|410671123|ref|YP_006923494.1| - 0.00043 19.8 0.0 0.014 14.9 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA PF00004.24 gi|410671123|ref|YP_006923494.1| - 0.00068 19.8 0.0 0.72 10.0 0.0 2.6 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) Zot PF05707.7 gi|410671123|ref|YP_006923494.1| - 0.021 14.3 0.0 0.088 12.2 0.0 1.9 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) H_kinase_N PF12282.3 gi|410671123|ref|YP_006923494.1| - 0.031 13.8 0.0 0.45 10.1 0.0 2.6 3 1 1 4 4 4 0 Signal transduction histidine kinase AAA_assoc_C PF09821.4 gi|410671123|ref|YP_006923494.1| - 0.047 13.9 0.0 0.085 13.1 0.0 1.3 1 0 0 1 1 1 0 C-terminal AAA-associated domain AAA_14 PF13173.1 gi|410671123|ref|YP_006923494.1| - 0.049 13.5 0.0 0.69 9.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain LAM_C PF12544.3 gi|410671124|ref|YP_006923495.1| - 4.6e-41 139.8 0.0 7.4e-41 139.1 0.0 1.3 1 0 0 1 1 1 1 Lysine-2,3-aminomutase Radical_SAM PF04055.16 gi|410671124|ref|YP_006923495.1| - 4.3e-10 40.0 0.0 1.7e-09 38.0 0.0 1.9 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|410671124|ref|YP_006923495.1| - 0.0082 16.1 0.0 0.028 14.4 0.0 1.9 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|410671124|ref|YP_006923495.1| - 0.014 15.5 0.0 0.13 12.4 0.0 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Acetyltransf_10 PF13673.1 gi|410671125|ref|YP_006923496.1| - 4.1e-08 33.3 0.0 6.4e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|410671125|ref|YP_006923496.1| - 4.8e-07 29.8 0.0 8.1e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|410671125|ref|YP_006923496.1| - 3.4e-06 26.9 0.1 5.8e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|410671125|ref|YP_006923496.1| - 1.2e-05 25.2 0.0 2.3e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family DUF3749 PF12568.3 gi|410671125|ref|YP_006923496.1| - 0.0074 15.8 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain HTH_24 PF13412.1 gi|410671126|ref|YP_006923497.1| - 2e-15 55.8 0.5 2e-15 55.8 0.4 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|410671126|ref|YP_006923497.1| - 3.8e-11 42.3 0.0 6.8e-11 41.5 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|410671126|ref|YP_006923497.1| - 2.3e-07 30.5 0.0 1.7e-06 27.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|410671126|ref|YP_006923497.1| - 6.7e-07 28.9 0.0 9.2e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|410671126|ref|YP_006923497.1| - 7.3e-05 22.3 0.4 0.00025 20.6 0.0 1.9 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.2 gi|410671126|ref|YP_006923497.1| - 0.00027 20.5 0.0 0.00043 19.8 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|410671126|ref|YP_006923497.1| - 0.00028 20.5 0.0 0.00059 19.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.5 gi|410671126|ref|YP_006923497.1| - 0.0006 19.4 0.4 0.0018 17.9 0.3 1.9 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain FaeA PF04703.7 gi|410671126|ref|YP_006923497.1| - 0.00072 19.6 0.0 0.0015 18.6 0.0 1.5 1 0 0 1 1 1 1 FaeA-like protein HTH_30 PF13556.1 gi|410671126|ref|YP_006923497.1| - 0.0013 18.2 0.0 0.0029 17.1 0.0 1.5 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_IclR PF09339.5 gi|410671126|ref|YP_006923497.1| - 0.0016 18.0 0.0 0.0028 17.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|410671126|ref|YP_006923497.1| - 0.0028 17.9 0.0 0.083 13.2 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|410671126|ref|YP_006923497.1| - 0.0033 17.5 0.1 0.0091 16.0 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator FeoC PF09012.5 gi|410671126|ref|YP_006923497.1| - 0.0062 16.2 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_Mga PF08280.6 gi|410671126|ref|YP_006923497.1| - 0.0069 16.1 0.5 0.028 14.1 0.0 2.2 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_5 PF01022.15 gi|410671126|ref|YP_006923497.1| - 0.0086 15.7 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.11 gi|410671126|ref|YP_006923497.1| - 0.0091 15.5 0.1 0.024 14.1 0.0 1.7 2 0 0 2 2 1 1 LexA DNA binding domain HTH_34 PF13601.1 gi|410671126|ref|YP_006923497.1| - 0.014 15.4 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain RPA_C PF08784.6 gi|410671126|ref|YP_006923497.1| - 0.015 15.6 0.1 0.063 13.6 0.0 1.9 2 0 0 2 2 2 0 Replication protein A C terminal TrmB PF01978.14 gi|410671126|ref|YP_006923497.1| - 0.022 14.4 1.5 0.08 12.6 0.2 2.1 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB EAP30 PF04157.11 gi|410671126|ref|YP_006923497.1| - 0.022 13.8 0.1 0.051 12.7 0.0 1.5 2 0 0 2 2 2 0 EAP30/Vps36 family GntR PF00392.16 gi|410671126|ref|YP_006923497.1| - 0.032 13.6 0.0 0.099 12.1 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family FlaC_arch PF05377.6 gi|410671126|ref|YP_006923497.1| - 0.035 14.0 2.5 0.049 13.5 0.0 2.4 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) HTH_36 PF13730.1 gi|410671126|ref|YP_006923497.1| - 0.072 13.2 0.6 0.12 12.5 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|410671126|ref|YP_006923497.1| - 0.075 13.0 0.0 0.52 10.3 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|410671126|ref|YP_006923497.1| - 0.084 12.4 0.0 0.21 11.1 0.0 1.6 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_45 PF14947.1 gi|410671126|ref|YP_006923497.1| - 0.13 12.1 1.3 0.56 10.0 0.0 2.1 1 1 1 2 2 2 0 Winged helix-turn-helix PCI PF01399.22 gi|410671126|ref|YP_006923497.1| - 0.21 11.9 1.6 1.6 9.1 0.0 2.2 2 1 0 2 2 2 0 PCI domain Aconitase_C PF00694.14 gi|410671127|ref|YP_006923498.1| - 2.5e-20 72.9 0.1 5e-20 71.9 0.1 1.5 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|410671127|ref|YP_006923498.1| - 0.0011 18.4 0.0 0.036 13.4 0.0 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Iso_dh PF00180.15 gi|410671128|ref|YP_006923499.1| - 2.2e-94 316.2 0.0 2.6e-94 316.0 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase AAA_13 PF13166.1 gi|410671129|ref|YP_006923500.1| - 0.018 13.5 3.8 0.018 13.5 2.7 1.0 1 0 0 1 1 1 0 AAA domain Geminin PF07412.7 gi|410671129|ref|YP_006923500.1| - 0.018 14.7 6.2 0.019 14.6 3.7 1.2 1 1 0 1 1 1 0 Geminin E3_UbLigase_R4 PF13764.1 gi|410671129|ref|YP_006923500.1| - 0.02 12.8 0.9 0.022 12.7 0.6 1.0 1 0 0 1 1 1 0 E3 ubiquitin-protein ligase UBR4 Fib_alpha PF08702.5 gi|410671129|ref|YP_006923500.1| - 0.025 14.7 6.8 0.028 14.5 4.7 1.0 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF2605 PF10792.4 gi|410671129|ref|YP_006923500.1| - 0.04 13.6 0.7 0.048 13.3 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2605) CCDC155 PF14662.1 gi|410671129|ref|YP_006923500.1| - 0.051 13.1 6.5 0.062 12.8 4.5 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 DUF4201 PF13870.1 gi|410671129|ref|YP_006923500.1| - 0.056 12.8 7.1 0.078 12.4 4.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) DUF1804 PF08822.6 gi|410671129|ref|YP_006923500.1| - 0.067 12.9 0.8 0.079 12.6 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1804) Syntaxin-6_N PF09177.6 gi|410671129|ref|YP_006923500.1| - 0.073 13.4 3.7 0.12 12.8 2.6 1.3 1 0 0 1 1 1 0 Syntaxin 6, N-terminal PSII_Pbs27 PF13326.1 gi|410671129|ref|YP_006923500.1| - 0.082 12.8 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Photosystem II Pbs27 Halogen_Hydrol PF10112.4 gi|410671129|ref|YP_006923500.1| - 0.085 12.2 4.1 0.13 11.6 1.6 1.9 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Tropomyosin_1 PF12718.2 gi|410671129|ref|YP_006923500.1| - 0.094 12.5 9.2 0.61 9.9 6.4 1.9 1 1 0 1 1 1 0 Tropomyosin like DUF3450 PF11932.3 gi|410671129|ref|YP_006923500.1| - 0.098 11.9 5.4 0.12 11.5 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Exonuc_VII_S PF02609.11 gi|410671129|ref|YP_006923500.1| - 0.11 12.3 2.0 11 5.8 0.7 2.7 2 1 0 2 2 2 0 Exonuclease VII small subunit Sugarporin_N PF11471.3 gi|410671129|ref|YP_006923500.1| - 0.11 12.1 5.7 0.85 9.3 1.8 2.4 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension Bul1_C PF04426.7 gi|410671129|ref|YP_006923500.1| - 0.11 11.6 3.3 0.14 11.3 2.3 1.1 1 0 0 1 1 1 0 Bul1 C terminus IFT20 PF14931.1 gi|410671129|ref|YP_006923500.1| - 0.13 12.1 5.9 0.17 11.7 4.1 1.1 1 0 0 1 1 1 0 Intraflagellar transport complex B, subunit 20 DUF1955 PF09205.5 gi|410671129|ref|YP_006923500.1| - 0.13 11.7 0.9 0.18 11.3 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1955) Spc7 PF08317.6 gi|410671129|ref|YP_006923500.1| - 0.15 10.7 8.5 0.17 10.5 5.9 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein FlpD PF02662.11 gi|410671129|ref|YP_006923500.1| - 0.16 11.6 0.4 0.21 11.2 0.3 1.2 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit Rota_NSP3 PF01665.11 gi|410671129|ref|YP_006923500.1| - 0.16 10.8 2.2 0.19 10.6 1.5 1.0 1 0 0 1 1 1 0 Rotavirus non-structural protein NSP3 CENP-Q PF13094.1 gi|410671129|ref|YP_006923500.1| - 0.17 11.9 9.3 0.35 10.8 6.2 1.7 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Tropomyosin PF00261.15 gi|410671129|ref|YP_006923500.1| - 0.21 10.6 10.5 0.37 9.8 4.8 1.9 1 1 0 1 1 1 0 Tropomyosin CCDC-167 PF15188.1 gi|410671129|ref|YP_006923500.1| - 0.25 11.3 5.7 0.53 10.2 2.1 2.1 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 ADIP PF11559.3 gi|410671129|ref|YP_006923500.1| - 0.26 11.1 7.2 0.29 11.0 5.0 1.0 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF4298 PF14131.1 gi|410671129|ref|YP_006923500.1| - 0.27 11.1 4.8 0.6 10.0 0.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4298) Spt5_N PF11942.3 gi|410671129|ref|YP_006923500.1| - 0.29 11.7 6.5 0.25 11.9 0.9 2.1 1 1 1 2 2 2 0 Spt5 transcription elongation factor, acidic N-terminal Lebercilin PF15619.1 gi|410671129|ref|YP_006923500.1| - 0.31 10.4 9.5 0.47 9.8 6.6 1.3 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease FH2 PF02181.18 gi|410671129|ref|YP_006923500.1| - 0.42 9.4 6.2 0.7 8.7 2.2 1.7 1 1 1 2 2 2 0 Formin Homology 2 Domain YgbA_NO PF11756.3 gi|410671129|ref|YP_006923500.1| - 0.43 10.6 3.0 7.5 6.6 2.1 2.0 1 1 0 1 1 1 0 Nitrous oxide-stimulated promoter Adaptin_binding PF10199.4 gi|410671129|ref|YP_006923500.1| - 0.43 10.8 7.2 1.1 9.5 2.1 2.2 1 1 1 2 2 2 0 Alpha and gamma adaptin binding protein p34 DASH_Duo1 PF08651.5 gi|410671129|ref|YP_006923500.1| - 0.44 10.1 4.2 1.5 8.4 1.5 2.1 2 0 0 2 2 2 0 DASH complex subunit Duo1 IncA PF04156.9 gi|410671129|ref|YP_006923500.1| - 0.47 10.0 8.8 0.59 9.6 6.1 1.1 1 0 0 1 1 1 0 IncA protein FlaC_arch PF05377.6 gi|410671129|ref|YP_006923500.1| - 0.49 10.3 6.5 2.2 8.2 1.0 2.2 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) BRE1 PF08647.6 gi|410671129|ref|YP_006923500.1| - 0.5 10.3 9.4 0.7 9.8 6.4 1.4 1 1 0 1 1 1 0 BRE1 E3 ubiquitin ligase APG6 PF04111.7 gi|410671129|ref|YP_006923500.1| - 0.73 8.8 7.6 0.8 8.6 5.2 1.0 1 0 0 1 1 1 0 Autophagy protein Apg6 BLOC1_2 PF10046.4 gi|410671129|ref|YP_006923500.1| - 0.92 9.6 8.7 4.8 7.3 6.0 1.9 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin PF00804.20 gi|410671129|ref|YP_006923500.1| - 1.1 9.4 6.5 1.6 8.9 4.5 1.3 1 0 0 1 1 1 0 Syntaxin V_ATPase_I PF01496.14 gi|410671129|ref|YP_006923500.1| - 1.1 7.0 5.2 1.3 6.8 3.6 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TMF_TATA_bd PF12325.3 gi|410671129|ref|YP_006923500.1| - 1.2 8.8 11.5 1.9 8.2 3.8 2.1 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding TBCA PF02970.11 gi|410671129|ref|YP_006923500.1| - 1.3 9.1 9.7 1.4 9.0 6.4 1.4 1 1 0 1 1 1 0 Tubulin binding cofactor A DUF2570 PF10828.3 gi|410671129|ref|YP_006923500.1| - 1.6 8.3 6.4 2.3 7.8 4.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2570) DUF342 PF03961.8 gi|410671129|ref|YP_006923500.1| - 1.8 6.9 6.4 2 6.7 4.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Enkurin PF13864.1 gi|410671129|ref|YP_006923500.1| - 2 8.7 8.5 5.8 7.1 5.9 1.9 1 1 0 1 1 1 0 Calmodulin-binding Prefoldin PF02996.12 gi|410671129|ref|YP_006923500.1| - 2 8.0 10.1 5.3 6.7 1.9 2.4 1 1 1 2 2 2 0 Prefoldin subunit DUF4441 PF14536.1 gi|410671129|ref|YP_006923500.1| - 2.4 8.1 7.4 5.4 7.0 5.1 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4441) TMPIT PF07851.8 gi|410671129|ref|YP_006923500.1| - 2.7 6.9 5.6 3 6.8 3.9 1.0 1 0 0 1 1 1 0 TMPIT-like protein DivIC PF04977.10 gi|410671129|ref|YP_006923500.1| - 3 7.3 9.1 1 8.8 1.5 2.7 1 1 2 3 3 3 0 Septum formation initiator DUF1664 PF07889.7 gi|410671129|ref|YP_006923500.1| - 3.9 7.2 6.0 7 6.4 4.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) DUF2951 PF11166.3 gi|410671129|ref|YP_006923500.1| - 4.6 7.1 10.0 5.5 6.9 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2951) DUF3373 PF11853.3 gi|410671129|ref|YP_006923500.1| - 5.9 5.2 7.6 1.4 7.3 1.9 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3373) AA_kinase PF00696.23 gi|410671130|ref|YP_006923501.1| - 4.1e-29 101.8 1.5 5.2e-29 101.4 1.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family SKI PF01202.17 gi|410671130|ref|YP_006923501.1| - 0.034 14.0 0.1 0.17 11.7 0.0 2.0 1 1 1 2 2 2 0 Shikimate kinase tRNA_anti-like PF12869.2 gi|410671131|ref|YP_006923502.1| - 0.013 15.0 0.3 0.17 11.3 0.1 2.4 2 0 0 2 2 2 0 tRNA_anti-like Ten1_2 PF15490.1 gi|410671131|ref|YP_006923502.1| - 0.15 11.6 0.0 3.4 7.2 0.0 2.3 2 0 0 2 2 2 0 Telomere-capping, CST complex subunit Semialdhyde_dhC PF02774.13 gi|410671132|ref|YP_006923503.1| - 2.5e-39 135.0 0.0 4.5e-39 134.1 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|410671132|ref|YP_006923503.1| - 6.1e-36 123.3 0.0 9.6e-36 122.7 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|410671132|ref|YP_006923503.1| - 6.1e-06 26.7 0.0 1.1e-05 25.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|410671132|ref|YP_006923503.1| - 0.002 18.0 0.0 0.0034 17.2 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|410671132|ref|YP_006923503.1| - 0.0037 16.3 0.0 0.006 15.5 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase DXP_reductoisom PF02670.11 gi|410671132|ref|YP_006923503.1| - 0.0086 16.6 0.0 0.02 15.4 0.0 1.6 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Gp_dh_C PF02800.15 gi|410671132|ref|YP_006923503.1| - 0.026 13.9 0.0 0.083 12.3 0.0 1.8 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NAD_binding_10 PF13460.1 gi|410671132|ref|YP_006923503.1| - 0.12 12.3 0.0 0.29 11.1 0.0 1.6 1 1 0 1 1 1 0 NADH(P)-binding Fer4 PF00037.22 gi|410671133|ref|YP_006923504.1| - 1.2e-16 59.5 20.8 1.9e-08 33.5 4.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|410671133|ref|YP_006923504.1| - 1.5e-12 47.6 13.7 1.8e-12 47.4 9.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410671133|ref|YP_006923504.1| - 2.4e-12 46.8 12.2 2.9e-12 46.6 8.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410671133|ref|YP_006923504.1| - 5.4e-12 45.3 10.3 7e-12 44.9 7.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410671133|ref|YP_006923504.1| - 1.2e-10 41.9 10.9 4.2e-05 24.1 0.8 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|410671133|ref|YP_006923504.1| - 1.8e-10 40.5 15.7 6.4e-10 38.7 10.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410671133|ref|YP_006923504.1| - 2.1e-10 39.9 19.8 6.2e-06 25.8 4.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|410671133|ref|YP_006923504.1| - 2.6e-10 39.5 18.3 5.3e-05 22.8 3.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|410671133|ref|YP_006923504.1| - 6.6e-10 38.5 14.0 4.3e-05 23.5 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|410671133|ref|YP_006923504.1| - 7.9e-08 32.3 20.4 0.00019 21.7 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|410671133|ref|YP_006923504.1| - 9e-08 32.0 12.5 4.6e-07 29.7 8.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410671133|ref|YP_006923504.1| - 4.6e-07 30.1 11.3 0.0012 19.1 0.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|410671133|ref|YP_006923504.1| - 4.8e-07 30.1 13.5 0.00075 19.8 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|410671133|ref|YP_006923504.1| - 3.4e-05 24.3 15.5 0.0006 20.3 10.7 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|410671133|ref|YP_006923504.1| - 0.00034 20.9 16.6 0.066 13.6 11.5 2.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|410671133|ref|YP_006923504.1| - 0.00078 19.2 6.0 0.0009 19.0 4.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain zf-4CXXC_R1 PF10497.4 gi|410671133|ref|YP_006923504.1| - 8.9 6.4 9.7 41 4.3 6.7 1.8 1 1 0 1 1 1 0 Zinc-finger domain of monoamine-oxidase A repressor R1 DUF1628 PF07790.6 gi|410671134|ref|YP_006923505.1| - 5.2e-11 43.1 1.8 5.2e-11 43.1 1.2 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) Helicase_C_2 PF13307.1 gi|410671135|ref|YP_006923506.1| - 1.1e-31 109.9 0.3 9.7e-31 106.9 0.0 2.4 2 1 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|410671135|ref|YP_006923506.1| - 1.6e-20 73.1 6.1 1.1e-19 70.4 4.3 2.0 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|410671135|ref|YP_006923506.1| - 1.5e-06 27.7 1.3 0.0044 16.5 0.1 3.1 3 0 0 3 3 3 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|410671135|ref|YP_006923506.1| - 0.00037 20.3 4.5 0.0096 15.7 3.1 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|410671135|ref|YP_006923506.1| - 0.0018 17.5 0.3 0.03 13.5 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein Zot PF05707.7 gi|410671135|ref|YP_006923506.1| - 0.0019 17.7 0.2 0.074 12.5 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) SNF2_N PF00176.18 gi|410671135|ref|YP_006923506.1| - 0.0076 15.0 1.4 0.031 13.0 0.9 1.8 1 1 0 1 1 1 1 SNF2 family N-terminal domain DUF2075 PF09848.4 gi|410671135|ref|YP_006923506.1| - 0.014 14.3 0.7 0.73 8.7 0.1 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA PF00004.24 gi|410671135|ref|YP_006923506.1| - 0.024 14.8 1.3 5.7 7.1 0.0 3.3 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) AAA_34 PF13872.1 gi|410671135|ref|YP_006923506.1| - 0.033 12.9 0.0 0.055 12.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 AAA_22 PF13401.1 gi|410671135|ref|YP_006923506.1| - 0.045 13.8 0.1 9.9 6.3 0.0 3.0 2 1 0 2 2 2 0 AAA domain Methyltransf_25 PF13649.1 gi|410671135|ref|YP_006923506.1| - 0.069 13.5 0.2 43 4.5 0.3 3.6 2 1 0 2 2 2 0 Methyltransferase domain Spore_YtfJ PF09579.5 gi|410671136|ref|YP_006923507.1| - 9.7e-27 92.6 4.4 1.7e-26 91.8 3.0 1.4 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) DUF2953 PF11167.3 gi|410671137|ref|YP_006923508.1| - 3.4e-07 30.0 0.0 6.6e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2953) Class_IIIsignal PF04021.7 gi|410671137|ref|YP_006923508.1| - 4.5 7.1 7.3 9.1 6.1 5.1 1.5 1 0 0 1 1 1 0 Class III signal peptide GHMP_kinases_C PF08544.8 gi|410671138|ref|YP_006923509.1| - 7.5e-09 35.6 0.0 1.5e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|410671138|ref|YP_006923509.1| - 7.8e-07 29.0 1.5 1.7e-06 28.0 1.1 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain Nop PF01798.13 gi|410671139|ref|YP_006923510.1| - 1.3e-45 154.3 0.0 2.4e-45 153.5 0.0 1.4 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|410671139|ref|YP_006923510.1| - 1e-12 47.6 0.0 2e-12 46.6 0.0 1.6 1 0 0 1 1 1 1 NOSIC (NUC001) domain Fibrillarin PF01269.12 gi|410671140|ref|YP_006923511.1| - 5.4e-87 290.5 0.0 7e-87 290.1 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin AAA_14 PF13173.1 gi|410671141|ref|YP_006923512.1| - 2.4e-35 121.2 0.2 2.4e-35 121.2 0.1 2.4 2 1 0 2 2 2 1 AAA domain DUF4143 PF13635.1 gi|410671141|ref|YP_006923512.1| - 8.7e-12 45.0 2.2 8.7e-12 45.0 1.5 2.3 2 1 1 3 3 3 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|410671141|ref|YP_006923512.1| - 4e-05 23.4 0.1 4e-05 23.4 0.1 3.7 2 2 1 3 3 3 1 Archaeal ATPase AAA_17 PF13207.1 gi|410671141|ref|YP_006923512.1| - 0.002 18.9 0.5 0.011 16.5 0.3 2.6 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|410671141|ref|YP_006923512.1| - 0.021 14.0 0.0 0.038 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|410671141|ref|YP_006923512.1| - 0.037 13.9 0.0 0.25 11.3 0.0 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase HAD PF12710.2 gi|410671141|ref|YP_006923512.1| - 0.063 13.4 0.1 0.32 11.1 0.0 2.3 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase AAA_10 PF12846.2 gi|410671141|ref|YP_006923512.1| - 0.07 12.5 0.1 5.6 6.3 0.0 2.7 3 0 0 3 3 3 0 AAA-like domain AAA_16 PF13191.1 gi|410671141|ref|YP_006923512.1| - 0.079 12.9 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain NurA PF09376.5 gi|410671141|ref|YP_006923512.1| - 0.17 11.3 4.5 0.24 10.8 0.1 2.5 2 1 0 2 2 2 0 NurA domain PIN PF01850.16 gi|410671142|ref|YP_006923513.1| - 2.1e-17 63.5 0.5 2.4e-17 63.3 0.4 1.1 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|410671143|ref|YP_006923514.1| - 0.0005 19.7 0.0 0.00074 19.1 0.0 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Lumazine_bd PF12870.2 gi|410671146|ref|YP_006923517.1| - 3.7e-06 26.9 7.9 0.00026 20.9 5.5 2.2 1 1 0 1 1 1 1 Lumazine-binding domain MecA_N PF05223.6 gi|410671146|ref|YP_006923517.1| - 2.1e-05 24.5 1.4 2.7e-05 24.1 0.9 1.1 1 0 0 1 1 1 1 NTF2-like N-terminal transpeptidase domain DNA_pol_B_2 PF03175.8 gi|410671146|ref|YP_006923517.1| - 0.011 14.4 1.7 0.012 14.2 1.2 1.2 1 0 0 1 1 1 0 DNA polymerase type B, organellar and viral CTP-dep_RFKase PF01982.11 gi|410671147|ref|YP_006923518.1| - 6.5e-46 154.8 0.0 9.4e-46 154.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR PF01047.17 gi|410671147|ref|YP_006923518.1| - 0.0019 17.8 0.1 0.0037 16.9 0.1 1.5 1 0 0 1 1 1 1 MarR family Antitoxin-MazE PF04014.13 gi|410671147|ref|YP_006923518.1| - 0.061 13.0 0.8 2 8.2 0.2 2.8 3 0 0 3 3 3 0 Antidote-toxin recognition MazE HTH_24 PF13412.1 gi|410671147|ref|YP_006923518.1| - 0.078 12.3 0.1 0.16 11.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|410671147|ref|YP_006923518.1| - 0.14 11.8 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 MarR family DHBP_synthase PF00926.14 gi|410671148|ref|YP_006923519.1| - 9.2e-65 217.5 0.0 1.1e-64 217.3 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase Fasciclin PF02469.17 gi|410671150|ref|YP_006923521.1| - 1.9e-27 95.8 0.0 2.3e-27 95.5 0.0 1.0 1 0 0 1 1 1 1 Fasciclin domain DUF4098 PF13345.1 gi|410671150|ref|YP_006923521.1| - 0.14 12.0 1.6 2 8.4 1.1 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4098) ABC_tran PF00005.22 gi|410671152|ref|YP_006923523.1| - 7e-19 68.4 0.0 1.3e-18 67.5 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|410671152|ref|YP_006923523.1| - 5e-10 39.8 0.0 6.5e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|410671152|ref|YP_006923523.1| - 0.00062 18.9 0.1 0.0019 17.3 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|410671152|ref|YP_006923523.1| - 0.081 12.1 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|410671152|ref|YP_006923523.1| - 0.11 12.3 0.0 0.85 9.5 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC2_membrane PF01061.19 gi|410671153|ref|YP_006923524.1| - 7e-24 84.1 20.2 7e-24 84.1 14.0 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|410671153|ref|YP_006923524.1| - 3.5e-11 42.7 31.3 4.5e-11 42.3 21.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein IgaA PF07095.6 gi|410671154|ref|YP_006923525.1| - 0.11 10.1 0.0 0.15 9.7 0.0 1.1 1 0 0 1 1 1 0 Intracellular growth attenuator protein IgaA Tegument_dsDNA PF12818.2 gi|410671154|ref|YP_006923525.1| - 0.12 11.2 0.0 0.18 10.6 0.0 1.2 1 0 0 1 1 1 0 dsDNA viral tegument protein Lactamase_B_2 PF12706.2 gi|410671155|ref|YP_006923526.1| - 4.3e-24 85.1 0.8 5.2e-24 84.8 0.6 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|410671155|ref|YP_006923526.1| - 6.9e-22 78.0 1.8 9.3e-22 77.6 1.3 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|410671155|ref|YP_006923526.1| - 1.4e-08 34.5 0.2 2.3e-08 33.9 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AAA PF00004.24 gi|410671156|ref|YP_006923527.1| - 1.7e-37 128.5 0.0 7e-37 126.5 0.0 2.1 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|410671156|ref|YP_006923527.1| - 3.6e-07 31.0 0.1 3.2e-06 27.9 0.0 2.6 2 2 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|410671156|ref|YP_006923527.1| - 1.3e-05 24.9 0.0 4.8e-05 23.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF815 PF05673.8 gi|410671156|ref|YP_006923527.1| - 1.7e-05 23.8 0.0 3.7e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_33 PF13671.1 gi|410671156|ref|YP_006923527.1| - 2.9e-05 23.9 0.0 6.6e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|410671156|ref|YP_006923527.1| - 3.2e-05 23.9 0.1 0.00012 22.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|410671156|ref|YP_006923527.1| - 8.3e-05 22.6 0.3 0.056 13.4 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain RuvB_N PF05496.7 gi|410671156|ref|YP_006923527.1| - 0.0001 21.4 0.0 0.00022 20.3 0.0 1.5 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|410671156|ref|YP_006923527.1| - 0.00029 20.7 0.0 0.0076 16.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|410671156|ref|YP_006923527.1| - 0.00049 18.9 0.0 0.0012 17.6 0.0 1.6 1 0 0 1 1 1 1 TIP49 C-terminus AAA_22 PF13401.1 gi|410671156|ref|YP_006923527.1| - 0.00049 20.2 0.2 0.056 13.5 0.2 2.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|410671156|ref|YP_006923527.1| - 0.00068 19.6 0.0 0.0015 18.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|410671156|ref|YP_006923527.1| - 0.00076 19.7 0.1 0.0041 17.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|410671156|ref|YP_006923527.1| - 0.00079 18.8 0.1 0.033 13.5 0.0 2.4 1 1 1 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|410671156|ref|YP_006923527.1| - 0.001 18.2 0.0 0.0024 17.0 0.0 1.7 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|410671156|ref|YP_006923527.1| - 0.0011 18.4 0.0 0.0018 17.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|410671156|ref|YP_006923527.1| - 0.0019 17.3 0.1 0.0068 15.5 0.0 1.9 3 0 0 3 3 3 1 Zeta toxin AAA_24 PF13479.1 gi|410671156|ref|YP_006923527.1| - 0.0048 16.5 0.1 0.012 15.2 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|410671156|ref|YP_006923527.1| - 0.0049 16.5 0.1 0.015 15.0 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain NACHT PF05729.7 gi|410671156|ref|YP_006923527.1| - 0.0079 15.8 0.1 0.45 10.1 0.0 2.5 1 1 1 2 2 2 1 NACHT domain MMR_HSR1 PF01926.18 gi|410671156|ref|YP_006923527.1| - 0.013 15.4 0.0 0.026 14.4 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase CPT PF07931.7 gi|410671156|ref|YP_006923527.1| - 0.027 14.0 0.0 0.067 12.8 0.0 1.7 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Sigma54_activat PF00158.21 gi|410671156|ref|YP_006923527.1| - 0.028 13.8 0.0 0.055 12.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain SKI PF01202.17 gi|410671156|ref|YP_006923527.1| - 0.035 13.9 0.0 0.09 12.6 0.0 1.8 1 0 0 1 1 1 0 Shikimate kinase ResIII PF04851.10 gi|410671156|ref|YP_006923527.1| - 0.036 13.8 0.0 0.06 13.1 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit RNA_helicase PF00910.17 gi|410671156|ref|YP_006923527.1| - 0.05 13.7 0.0 0.12 12.5 0.0 1.8 1 0 0 1 1 1 0 RNA helicase PhoH PF02562.11 gi|410671156|ref|YP_006923527.1| - 0.052 12.7 0.0 0.17 11.0 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein PduV-EutP PF10662.4 gi|410671156|ref|YP_006923527.1| - 0.054 12.9 0.0 0.15 11.5 0.0 1.8 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.22 gi|410671156|ref|YP_006923527.1| - 0.057 13.7 0.0 0.15 12.3 0.0 1.9 1 1 0 1 1 1 0 ABC transporter zinc_ribbon_2 PF13240.1 gi|410671157|ref|YP_006923528.1| - 0.02 14.4 1.1 0.98 8.9 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF1922 PF09082.5 gi|410671157|ref|YP_006923528.1| - 0.023 14.7 0.2 0.042 13.9 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1922) PaaX PF07848.7 gi|410671157|ref|YP_006923528.1| - 0.031 14.2 0.0 0.055 13.4 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein Lar_restr_allev PF14354.1 gi|410671157|ref|YP_006923528.1| - 0.05 13.9 0.2 0.1 12.8 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-CHY PF05495.7 gi|410671157|ref|YP_006923528.1| - 0.085 13.0 2.2 0.15 12.2 1.5 1.3 1 0 0 1 1 1 0 CHY zinc finger XPA_N PF01286.13 gi|410671157|ref|YP_006923528.1| - 0.093 12.4 0.0 2.7 7.7 0.0 2.3 2 0 0 2 2 2 0 XPA protein N-terminal RPA_C PF08784.6 gi|410671157|ref|YP_006923528.1| - 0.13 12.7 0.0 0.18 12.2 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal Zn_Tnp_IS1595 PF12760.2 gi|410671157|ref|YP_006923528.1| - 0.21 11.3 3.1 0.4 10.5 2.2 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF2296 PF10058.4 gi|410671157|ref|YP_006923528.1| - 0.24 11.1 1.5 0.53 10.0 1.1 1.6 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) DZR PF12773.2 gi|410671157|ref|YP_006923528.1| - 0.47 10.2 4.7 1.1 9.1 3.3 1.6 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|410671157|ref|YP_006923528.1| - 2.1 8.3 6.8 19 5.2 4.9 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zf-TFIIB PF13453.1 gi|410671157|ref|YP_006923528.1| - 3.1 7.0 5.5 7.2 5.8 3.8 1.6 1 0 0 1 1 1 0 Transcription factor zinc-finger Acetyltransf_1 PF00583.19 gi|410671158|ref|YP_006923529.1| - 5.4e-17 61.6 0.1 8e-17 61.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|410671158|ref|YP_006923529.1| - 9.5e-15 54.5 0.2 1.3e-14 54.0 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|410671158|ref|YP_006923529.1| - 4.9e-12 46.0 0.0 5.9e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|410671158|ref|YP_006923529.1| - 5.9e-10 39.2 0.1 8e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|410671158|ref|YP_006923529.1| - 2.1e-07 30.9 0.0 2.8e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|410671158|ref|YP_006923529.1| - 8.4e-07 28.6 0.0 1.3e-06 28.0 0.0 1.3 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|410671158|ref|YP_006923529.1| - 9.4e-07 29.0 0.0 1.6e-06 28.3 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|410671158|ref|YP_006923529.1| - 4.3e-05 23.3 0.0 7.4e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|410671158|ref|YP_006923529.1| - 0.00077 19.0 0.0 0.00094 18.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|410671158|ref|YP_006923529.1| - 0.003 17.4 0.0 0.011 15.6 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|410671158|ref|YP_006923529.1| - 0.0053 16.4 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_6 PF13480.1 gi|410671158|ref|YP_006923529.1| - 0.017 15.0 0.0 0.024 14.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|410671158|ref|YP_006923529.1| - 0.048 12.9 0.0 0.063 12.5 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Prenyltransf PF01255.14 gi|410671159|ref|YP_006923530.1| - 9.5e-32 109.9 0.0 6.9e-28 97.2 0.0 2.1 1 1 0 2 2 2 2 Putative undecaprenyl diphosphate synthase DUF1953 PF09196.5 gi|410671159|ref|YP_006923530.1| - 0.012 15.2 0.4 1.7 8.4 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1953) MMR_HSR1_C PF08438.5 gi|410671160|ref|YP_006923531.1| - 8.1e-32 109.6 0.0 1.8e-31 108.5 0.0 1.6 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|410671160|ref|YP_006923531.1| - 2.6e-16 59.6 0.0 6.6e-16 58.3 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.16 gi|410671160|ref|YP_006923531.1| - 1.3e-15 56.9 0.0 6.1e-15 54.8 0.0 2.0 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.13 gi|410671160|ref|YP_006923531.1| - 2e-07 30.4 0.7 5.1e-07 29.1 0.0 2.0 3 0 0 3 3 3 1 Ferrous iron transport protein B Methyltransf_11 PF08241.7 gi|410671162|ref|YP_006923532.1| - 1.6e-09 38.1 0.0 2.5e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410671162|ref|YP_006923532.1| - 0.00014 22.4 0.0 0.00022 21.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|410671162|ref|YP_006923532.1| - 0.00019 21.7 0.0 0.0003 21.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|410671162|ref|YP_006923532.1| - 0.0015 17.6 0.0 0.0026 16.9 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_PK PF05891.7 gi|410671162|ref|YP_006923532.1| - 0.028 13.7 0.0 0.041 13.1 0.0 1.2 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase UPF0020 PF01170.13 gi|410671162|ref|YP_006923532.1| - 0.15 11.6 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 ARL2_Bind_BART PF11527.3 gi|410671163|ref|YP_006923534.1| - 0.04 13.6 0.1 0.04 13.6 0.0 1.0 1 0 0 1 1 1 0 The ARF-like 2 binding protein BART Lambda_tail_I PF06805.7 gi|410671163|ref|YP_006923534.1| - 0.11 12.3 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I DUF2737 PF10930.3 gi|410671163|ref|YP_006923534.1| - 0.12 11.9 0.1 0.23 11.0 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2737) DNA_pol_alpha_N PF12254.3 gi|410671163|ref|YP_006923534.1| - 0.15 11.8 2.1 0.2 11.5 1.4 1.3 1 1 0 1 1 1 0 DNA polymerase alpha subunit p180 N terminal RibD_C PF01872.12 gi|410671164|ref|YP_006923535.1| - 8.1e-24 84.3 0.0 1.8e-23 83.2 0.0 1.5 1 1 0 1 1 1 1 RibD C-terminal domain DHFR_1 PF00186.14 gi|410671164|ref|YP_006923535.1| - 0.047 13.2 0.0 0.072 12.6 0.0 1.2 1 0 0 1 1 1 0 Dihydrofolate reductase RdgC PF04381.7 gi|410671165|ref|YP_006923536.1| - 0.013 14.4 0.0 1.4 7.8 0.0 2.2 2 0 0 2 2 2 0 Putative exonuclease, RdgC HEPN PF05168.9 gi|410671165|ref|YP_006923536.1| - 0.053 13.4 0.0 0.16 11.8 0.0 1.8 2 0 0 2 2 2 0 HEPN domain RVT_3 PF13456.1 gi|410671166|ref|YP_006923537.1| - 2.4e-12 46.4 0.0 4.6e-12 45.5 0.0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like CarboxypepD_reg PF13620.1 gi|410671167|ref|YP_006923538.1| - 3.1e-06 27.1 0.2 6.6e-06 26.0 0.1 1.5 1 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|410671167|ref|YP_006923538.1| - 3.1e-06 26.8 0.1 5.4e-06 26.0 0.1 1.4 1 0 0 1 1 1 1 Cna protein B-type domain MG1 PF11974.3 gi|410671167|ref|YP_006923538.1| - 0.052 14.1 0.0 0.083 13.4 0.0 1.3 1 1 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain NPCBM_assoc PF10633.4 gi|410671168|ref|YP_006923539.1| - 4.5e-06 26.6 0.8 1.1 9.3 0.0 4.4 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|410671168|ref|YP_006923539.1| - 0.00034 20.6 0.2 0.11 12.6 0.0 3.2 3 0 0 3 3 3 1 Domain of unknown function DUF11 DUF916 PF06030.7 gi|410671168|ref|YP_006923539.1| - 0.00051 19.8 0.3 2.8 7.7 0.0 4.3 3 2 1 4 4 4 1 Bacterial protein of unknown function (DUF916) DUF1034 PF06280.7 gi|410671168|ref|YP_006923539.1| - 0.0026 18.1 0.0 1.3 9.4 0.0 3.3 2 1 1 3 3 3 1 Fn3-like domain (DUF1034) DUF1573 PF07610.6 gi|410671168|ref|YP_006923539.1| - 0.0056 16.2 0.4 0.89 9.1 0.0 4.0 4 1 1 5 5 5 1 Protein of unknown function (DUF1573) DUF4097 PF13349.1 gi|410671168|ref|YP_006923539.1| - 0.0076 15.8 0.6 0.16 11.5 0.4 2.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4097) CARDB PF07705.6 gi|410671168|ref|YP_006923539.1| - 0.0092 16.0 1.0 1.3 9.1 0.0 2.9 3 0 0 3 3 3 1 CARDB Fn3-like PF14310.1 gi|410671168|ref|YP_006923539.1| - 0.071 13.0 0.1 1.4 8.9 0.0 2.9 3 0 0 3 3 3 0 Fibronectin type III-like domain PapD_N PF00345.15 gi|410671168|ref|YP_006923539.1| - 0.1 12.3 0.1 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Pili and flagellar-assembly chaperone, PapD N-terminal domain Cpn60_TCP1 PF00118.19 gi|410671172|ref|YP_006923543.1| - 1.2e-164 548.5 12.9 1.4e-164 548.3 8.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family BioY PF02632.9 gi|410671174|ref|YP_006923545.1| - 1.9e-48 163.8 23.5 1.9e-48 163.8 16.3 1.4 2 0 0 2 2 2 1 BioY family ECF-ribofla_trS PF07155.7 gi|410671174|ref|YP_006923545.1| - 2.3e-05 24.2 4.7 2.3e-05 24.2 3.3 3.0 2 1 1 3 3 3 1 ECF-type riboflavin transporter, S component DUF2269 PF10027.4 gi|410671174|ref|YP_006923545.1| - 2.4 7.9 15.1 0.23 11.2 3.5 2.6 2 2 0 2 2 2 0 Predicted integral membrane protein (DUF2269) Thia_YuaJ PF09515.5 gi|410671174|ref|YP_006923545.1| - 3.9 7.2 19.2 7.6 6.2 13.2 1.7 1 1 0 1 1 1 0 Thiamine transporter protein (Thia_YuaJ) ABC_tran PF00005.22 gi|410671175|ref|YP_006923546.1| - 4e-25 88.6 0.0 5.3e-25 88.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|410671175|ref|YP_006923546.1| - 1.1e-12 47.7 0.1 1.2e-11 44.3 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|410671175|ref|YP_006923546.1| - 4.4e-07 30.1 0.0 0.014 15.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|410671175|ref|YP_006923546.1| - 2.8e-05 23.5 0.1 5.3e-05 22.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|410671175|ref|YP_006923546.1| - 0.00012 21.6 0.0 0.42 10.0 0.2 2.1 1 1 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|410671175|ref|YP_006923546.1| - 0.00014 21.8 0.1 0.00029 20.8 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|410671175|ref|YP_006923546.1| - 0.0041 16.5 0.2 0.053 12.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|410671175|ref|YP_006923546.1| - 0.0044 16.7 0.1 0.38 10.4 0.0 2.2 2 0 0 2 2 2 1 NTPase AAA_23 PF13476.1 gi|410671175|ref|YP_006923546.1| - 0.007 16.7 0.0 0.0082 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|410671175|ref|YP_006923546.1| - 0.0076 15.3 0.0 0.018 14.1 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_5 PF07728.9 gi|410671175|ref|YP_006923546.1| - 0.0091 15.7 0.1 0.44 10.2 0.0 2.5 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|410671175|ref|YP_006923546.1| - 0.01 15.9 0.0 0.071 13.2 0.0 2.1 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|410671175|ref|YP_006923546.1| - 0.021 14.5 0.0 0.049 13.3 0.0 1.6 1 0 0 1 1 1 0 Archaeal ATPase ArgK PF03308.11 gi|410671175|ref|YP_006923546.1| - 0.022 13.5 0.0 0.041 12.6 0.0 1.4 1 0 0 1 1 1 0 ArgK protein AAA_14 PF13173.1 gi|410671175|ref|YP_006923546.1| - 0.027 14.3 0.0 5.9 6.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|410671175|ref|YP_006923546.1| - 0.033 13.7 0.0 0.13 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|410671175|ref|YP_006923546.1| - 0.047 12.7 0.1 3.9 6.5 0.0 2.1 2 0 0 2 2 2 0 KaiC DUF258 PF03193.11 gi|410671175|ref|YP_006923546.1| - 0.051 12.7 0.0 0.091 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|410671175|ref|YP_006923546.1| - 0.079 12.6 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain MutS_V PF00488.16 gi|410671175|ref|YP_006923546.1| - 0.095 12.0 0.0 0.22 10.9 0.0 1.5 2 0 0 2 2 2 0 MutS domain V Miro PF08477.8 gi|410671175|ref|YP_006923546.1| - 0.12 12.8 0.0 0.22 12.0 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein SbcCD_C PF13558.1 gi|410671175|ref|YP_006923546.1| - 0.13 12.1 0.2 2.6 8.0 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.22 gi|410671176|ref|YP_006923547.1| - 1.3e-27 96.7 0.0 1.9e-27 96.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410671176|ref|YP_006923547.1| - 9.8e-08 32.2 0.2 1.3e-06 28.6 0.0 2.3 1 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|410671176|ref|YP_006923547.1| - 3.4e-07 29.7 0.0 1.2e-06 27.9 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|410671176|ref|YP_006923547.1| - 0.00037 19.9 0.2 0.00066 19.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|410671176|ref|YP_006923547.1| - 0.0004 20.2 0.8 0.0013 18.6 0.0 2.2 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|410671176|ref|YP_006923547.1| - 0.00057 19.4 0.1 0.64 9.4 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|410671176|ref|YP_006923547.1| - 0.00062 19.7 0.5 0.0017 18.3 0.3 1.9 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.10 gi|410671176|ref|YP_006923547.1| - 0.0039 16.9 0.1 0.0092 15.6 0.1 1.6 1 0 0 1 1 1 1 NTPase AAA_22 PF13401.1 gi|410671176|ref|YP_006923547.1| - 0.0043 17.1 0.1 0.055 13.6 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|410671176|ref|YP_006923547.1| - 0.017 15.4 0.0 0.027 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|410671176|ref|YP_006923547.1| - 0.029 12.9 0.3 0.71 8.3 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class UPF0079 PF02367.12 gi|410671176|ref|YP_006923547.1| - 0.045 13.3 0.1 0.077 12.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Arch_ATPase PF01637.13 gi|410671176|ref|YP_006923547.1| - 0.068 12.8 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase Zeta_toxin PF06414.7 gi|410671176|ref|YP_006923547.1| - 0.078 12.0 0.1 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.1 gi|410671176|ref|YP_006923547.1| - 0.087 13.1 0.1 0.54 10.5 0.1 2.1 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|410671176|ref|YP_006923547.1| - 0.087 12.0 0.1 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|410671176|ref|YP_006923547.1| - 0.091 12.4 0.1 0.21 11.2 0.0 1.6 1 0 0 1 1 1 0 NACHT domain KaiC PF06745.8 gi|410671176|ref|YP_006923547.1| - 0.11 11.6 0.1 0.22 10.6 0.0 1.6 2 0 0 2 2 2 0 KaiC AAA_30 PF13604.1 gi|410671176|ref|YP_006923547.1| - 0.13 11.7 0.1 0.22 11.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain CbiQ PF02361.11 gi|410671177|ref|YP_006923548.1| - 3.7e-39 134.5 14.5 5.3e-39 134.0 10.1 1.2 1 0 0 1 1 1 1 Cobalt transport protein HTH_5 PF01022.15 gi|410671178|ref|YP_006923549.1| - 6.2e-15 54.5 1.1 1.2e-14 53.6 0.8 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|410671178|ref|YP_006923549.1| - 4.1e-12 45.7 0.2 6.4e-12 45.0 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|410671178|ref|YP_006923549.1| - 5.1e-05 22.8 0.3 9e-05 22.0 0.2 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|410671178|ref|YP_006923549.1| - 7e-05 22.4 0.0 0.00011 21.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|410671178|ref|YP_006923549.1| - 0.00026 20.3 0.3 0.0005 19.4 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|410671178|ref|YP_006923549.1| - 0.002 18.4 0.1 0.0034 17.6 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|410671178|ref|YP_006923549.1| - 0.0031 17.4 0.0 0.0052 16.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|410671178|ref|YP_006923549.1| - 0.0044 16.6 0.2 0.0071 16.0 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_9 PF08221.6 gi|410671178|ref|YP_006923549.1| - 0.0045 16.8 0.7 0.009 15.8 0.5 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Arg_repressor PF01316.16 gi|410671178|ref|YP_006923549.1| - 0.012 15.1 0.0 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain DUF4423 PF14394.1 gi|410671178|ref|YP_006923549.1| - 0.014 14.8 0.1 0.038 13.5 0.0 1.7 1 1 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_1 PF00126.22 gi|410671178|ref|YP_006923549.1| - 0.037 13.7 0.2 0.099 12.4 0.2 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family GntR PF00392.16 gi|410671178|ref|YP_006923549.1| - 0.084 12.3 0.2 0.66 9.4 0.1 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Phage_RpbA PF10789.4 gi|410671178|ref|YP_006923549.1| - 0.086 12.6 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Phage RNA polymerase binding, RpbA DUF2089 PF09862.4 gi|410671178|ref|YP_006923549.1| - 0.095 12.5 0.0 0.15 11.8 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) ArsR PF09824.4 gi|410671178|ref|YP_006923549.1| - 0.13 11.6 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 ArsR transcriptional regulator HxlR PF01638.12 gi|410671178|ref|YP_006923549.1| - 0.14 11.8 0.1 0.2 11.3 0.1 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF318 PF03773.8 gi|410671179|ref|YP_006923550.1| - 1.8e-51 174.9 12.5 2.6e-51 174.4 8.7 1.2 1 0 0 1 1 1 1 Predicted permease TOBE PF03459.12 gi|410671180|ref|YP_006923551.1| - 4.8e-14 52.2 0.2 8.5e-14 51.4 0.2 1.4 1 0 0 1 1 1 1 TOBE domain HTH_1 PF00126.22 gi|410671180|ref|YP_006923551.1| - 7.9e-06 25.5 0.0 1.6e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family TOBE_2 PF08402.5 gi|410671180|ref|YP_006923551.1| - 0.0085 16.0 0.1 0.03 14.3 0.0 1.8 2 0 0 2 2 2 1 TOBE domain HTH_3 PF01381.17 gi|410671181|ref|YP_006923552.1| - 2.4e-15 56.1 0.0 2.7e-15 55.9 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|410671181|ref|YP_006923552.1| - 5.9e-09 35.8 0.1 6.5e-09 35.7 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|410671181|ref|YP_006923552.1| - 5.2e-08 32.9 0.0 6.3e-08 32.7 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|410671181|ref|YP_006923552.1| - 4.6e-06 26.7 0.1 5.2e-06 26.5 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.1 gi|410671181|ref|YP_006923552.1| - 0.00051 19.7 0.0 0.00097 18.8 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_25 PF13413.1 gi|410671181|ref|YP_006923552.1| - 0.026 14.1 0.0 0.029 14.0 0.0 1.3 1 1 0 1 1 1 0 Helix-turn-helix domain Phage_CI_repr PF07022.8 gi|410671181|ref|YP_006923552.1| - 0.043 13.8 0.0 0.049 13.7 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Crp PF00325.15 gi|410671181|ref|YP_006923552.1| - 0.13 11.8 0.1 0.21 11.1 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_37 PF13744.1 gi|410671181|ref|YP_006923552.1| - 0.13 12.0 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2178 PF09946.4 gi|410671182|ref|YP_006923553.1| - 0.0017 18.0 6.6 0.0049 16.5 4.6 1.8 1 1 0 1 1 1 1 Predicted membrane protein (DUF2178) DUF1129 PF06570.6 gi|410671182|ref|YP_006923553.1| - 0.64 9.2 9.6 1 8.6 6.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) DUF3792 PF12670.2 gi|410671182|ref|YP_006923553.1| - 1.3 8.8 8.5 0.29 11.0 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3792) Peptidase_M50 PF02163.17 gi|410671182|ref|YP_006923553.1| - 1.4 7.8 4.7 1.9 7.3 3.2 1.2 1 0 0 1 1 1 0 Peptidase family M50 Yip1 PF04893.12 gi|410671182|ref|YP_006923553.1| - 1.4 8.3 9.0 3.7 7.0 6.3 1.6 1 1 0 1 1 1 0 Yip1 domain LysE PF01810.13 gi|410671182|ref|YP_006923553.1| - 1.4 8.1 10.0 8.9 5.5 7.0 1.9 1 1 0 1 1 1 0 LysE type translocator DUF3796 PF12676.2 gi|410671182|ref|YP_006923553.1| - 1.5 9.0 7.2 0.29 11.3 1.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3796) DUF3784 PF12650.2 gi|410671182|ref|YP_006923553.1| - 2.2 8.2 7.2 1.1 9.2 0.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) DUF1430 PF07242.6 gi|410671182|ref|YP_006923553.1| - 2.5 8.2 7.4 0.63 10.1 0.2 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1430) DUF2648 PF10855.3 gi|410671182|ref|YP_006923553.1| - 4.2 6.8 5.7 2.7 7.4 1.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2648) Halogen_Hydrol PF10112.4 gi|410671182|ref|YP_006923553.1| - 5.7 6.3 7.9 2.1 7.6 1.2 2.0 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Bax1-I PF01027.15 gi|410671182|ref|YP_006923553.1| - 6.1 6.3 15.1 0.91 9.0 2.1 2.0 1 1 1 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 7TM_GPCR_Srz PF10325.4 gi|410671182|ref|YP_006923553.1| - 6.4 5.8 9.9 1.6 7.8 0.7 2.0 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Srz FMN_red PF03358.10 gi|410671183|ref|YP_006923554.1| - 4.7e-14 52.1 0.0 6.2e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.20 gi|410671183|ref|YP_006923554.1| - 1.4e-05 25.1 0.4 2.9e-05 24.1 0.3 1.6 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_2 PF02525.12 gi|410671183|ref|YP_006923554.1| - 7.8e-05 22.2 0.0 0.0001 21.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|410671183|ref|YP_006923554.1| - 0.029 14.3 0.0 2.8 7.9 0.0 2.2 1 1 1 2 2 2 0 Flavodoxin domain A2M_comp PF07678.9 gi|410671185|ref|YP_006923556.1| - 1.1e-59 201.6 0.0 1.6e-59 201.1 0.0 1.2 1 0 0 1 1 1 1 A-macroglobulin complement component A2M PF00207.17 gi|410671185|ref|YP_006923556.1| - 2.8e-27 94.1 0.0 9.3e-27 92.4 0.0 2.0 1 0 0 1 1 1 1 Alpha-2-macroglobulin family A2M_N_2 PF07703.9 gi|410671185|ref|YP_006923556.1| - 4.1e-27 94.6 3.3 2.6e-23 82.2 0.2 4.1 4 0 0 4 4 3 2 Alpha-2-macroglobulin family N-terminal region A2M_N PF01835.14 gi|410671185|ref|YP_006923556.1| - 1.5e-21 76.4 0.0 2.2e-16 59.9 0.0 4.3 3 0 0 3 3 3 1 MG2 domain A2M_recep PF07677.9 gi|410671185|ref|YP_006923556.1| - 1.4e-19 70.0 1.4 1.4e-18 66.8 0.0 3.3 4 0 0 4 4 3 1 A-macroglobulin receptor Thiol-ester_cl PF10569.4 gi|410671185|ref|YP_006923556.1| - 3.1e-13 48.6 0.1 8.3e-13 47.3 0.1 1.8 1 0 0 1 1 1 1 Alpha-macro-globulin thiol-ester bond-forming region Prenyltrans_2 PF13249.1 gi|410671185|ref|YP_006923556.1| - 6.6e-10 39.4 1.4 0.0015 18.8 0.1 3.0 2 1 0 2 2 2 2 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|410671185|ref|YP_006923556.1| - 1.4e-05 25.0 0.5 0.094 12.7 0.0 2.8 2 1 0 2 2 2 2 Prenyltransferase-like Transglut_C PF00927.17 gi|410671185|ref|YP_006923556.1| - 0.0072 16.3 0.1 0.096 12.7 0.0 2.9 2 1 0 2 2 2 1 Transglutaminase family, C-terminal ig like domain fn3_3 PF14686.1 gi|410671185|ref|YP_006923556.1| - 0.039 14.0 0.2 17 5.5 0.0 3.5 3 0 0 3 3 2 0 Polysaccharide lyase family 4, domain II Prenyltrans PF00432.16 gi|410671185|ref|YP_006923556.1| - 0.42 10.2 2.1 1.1 8.9 0.0 2.7 3 0 0 3 3 3 0 Prenyltransferase and squalene oxidase repeat CarboxypepD_reg PF13620.1 gi|410671185|ref|YP_006923556.1| - 0.78 9.8 7.6 0.79 9.8 0.1 4.6 5 0 0 5 5 5 0 Carboxypeptidase regulatory-like domain DUF11 PF01345.13 gi|410671185|ref|YP_006923556.1| - 1.8 8.6 11.9 16 5.6 0.0 4.9 5 0 0 5 5 5 0 Domain of unknown function DUF11 SBF PF01758.11 gi|410671186|ref|YP_006923557.1| - 2.6e-26 92.2 14.3 2.6e-26 92.2 9.9 2.3 2 1 0 2 2 2 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|410671186|ref|YP_006923557.1| - 3.9e-15 55.7 21.3 7e-15 54.9 14.8 1.3 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) MutS_V PF00488.16 gi|410671188|ref|YP_006923559.1| - 1.8e-98 328.6 0.0 3.5e-98 327.7 0.0 1.5 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|410671188|ref|YP_006923559.1| - 4e-50 170.4 0.1 7.4e-50 169.5 0.1 1.5 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.15 gi|410671188|ref|YP_006923559.1| - 8.3e-43 145.0 0.0 1.7e-42 143.9 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|410671188|ref|YP_006923559.1| - 2.8e-31 107.5 0.5 6.5e-31 106.3 0.3 1.7 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|410671188|ref|YP_006923559.1| - 2.1e-25 89.3 0.2 1.4e-24 86.6 0.0 2.2 2 0 0 2 2 2 1 MutS domain II AAA_29 PF13555.1 gi|410671188|ref|YP_006923559.1| - 0.00091 18.7 0.0 0.0074 15.7 0.0 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|410671188|ref|YP_006923559.1| - 0.0011 18.8 0.0 0.26 11.2 0.0 3.3 2 1 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|410671188|ref|YP_006923559.1| - 0.004 17.4 0.1 0.2 11.9 0.0 3.3 3 2 0 3 3 3 1 ABC transporter RNA_helicase PF00910.17 gi|410671188|ref|YP_006923559.1| - 0.045 13.9 0.0 10 6.3 0.0 3.2 3 1 0 3 3 3 0 RNA helicase Calici_PP_N PF08405.6 gi|410671188|ref|YP_006923559.1| - 0.12 11.1 0.0 0.26 10.0 0.0 1.4 1 0 0 1 1 1 0 Viral polyprotein N-terminal MutL_C PF08676.6 gi|410671190|ref|YP_006923561.1| - 2.7e-39 134.0 0.0 4.5e-39 133.3 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|410671190|ref|YP_006923561.1| - 1.2e-37 127.9 0.0 2.1e-37 127.2 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|410671190|ref|YP_006923561.1| - 2e-15 56.6 1.0 3.6e-15 55.8 0.7 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|410671190|ref|YP_006923561.1| - 1.7e-10 40.6 0.1 6.7e-10 38.6 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YokU PF14122.1 gi|410671190|ref|YP_006923561.1| - 0.12 12.0 0.0 0.32 10.7 0.0 1.6 1 0 0 1 1 1 0 YokU-like protein CbiD PF01888.12 gi|410671191|ref|YP_006923562.1| - 7.6e-52 175.8 3.8 1e-51 175.4 2.6 1.2 1 0 0 1 1 1 1 CbiD TP_methylase PF00590.15 gi|410671192|ref|YP_006923563.1| - 1.2e-24 87.1 0.1 3.5e-24 85.6 0.0 1.6 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiM PF01891.11 gi|410671193|ref|YP_006923564.1| - 7.9e-56 188.9 22.0 9.1e-56 188.7 15.3 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region CbiN PF02553.10 gi|410671194|ref|YP_006923565.1| - 1.9e-22 79.0 0.5 2.2e-22 78.8 0.4 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiQ PF02361.11 gi|410671195|ref|YP_006923566.1| - 1.1e-30 106.8 9.9 1.5e-30 106.4 6.9 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|410671196|ref|YP_006923567.1| - 9.6e-32 110.1 0.0 1.6e-31 109.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410671196|ref|YP_006923567.1| - 1.1e-15 58.4 0.1 5.7e-09 36.3 0.0 2.4 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|410671196|ref|YP_006923567.1| - 4.4e-07 29.3 0.0 1.6e-06 27.5 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|410671196|ref|YP_006923567.1| - 0.00014 21.0 0.0 0.033 13.2 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|410671196|ref|YP_006923567.1| - 0.00015 21.2 0.1 0.00029 20.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|410671196|ref|YP_006923567.1| - 0.00038 19.0 0.0 0.38 9.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|410671196|ref|YP_006923567.1| - 0.0038 17.5 0.1 0.0071 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|410671196|ref|YP_006923567.1| - 0.014 14.6 0.0 0.032 13.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|410671196|ref|YP_006923567.1| - 0.032 14.1 0.0 0.12 12.3 0.0 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase SbcCD_C PF13558.1 gi|410671196|ref|YP_006923567.1| - 0.05 13.5 0.1 0.2 11.5 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Arch_ATPase PF01637.13 gi|410671196|ref|YP_006923567.1| - 0.11 12.1 0.0 0.5 10.0 0.0 1.9 2 0 0 2 2 2 0 Archaeal ATPase NicO PF03824.11 gi|410671197|ref|YP_006923568.1| - 1.5e-27 96.6 22.2 3.4e-16 59.3 6.0 2.0 1 1 1 2 2 2 2 High-affinity nickel-transport protein DsbD_2 PF13386.1 gi|410671197|ref|YP_006923568.1| - 2.9e-07 30.4 16.4 9.5e-06 25.4 7.0 2.9 1 1 1 2 2 2 1 Cytochrome C biogenesis protein transmembrane region DsbD PF02683.10 gi|410671197|ref|YP_006923568.1| - 1e-05 25.2 19.8 3.3e-05 23.5 13.2 1.9 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF2910 PF11139.3 gi|410671197|ref|YP_006923568.1| - 0.0063 15.6 15.1 0.068 12.2 1.8 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2910) DUF3754 PF12576.3 gi|410671197|ref|YP_006923568.1| - 0.038 13.6 0.3 0.094 12.3 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3754) DUF4321 PF14209.1 gi|410671197|ref|YP_006923568.1| - 0.071 12.8 4.5 0.084 12.5 1.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4321) DUF1129 PF06570.6 gi|410671197|ref|YP_006923568.1| - 0.19 10.9 9.4 0.1 11.8 1.7 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1129) IspA PF04279.10 gi|410671197|ref|YP_006923568.1| - 9.5 6.1 9.4 2.2 8.1 0.9 2.3 2 0 0 2 2 2 0 Intracellular septation protein A AP_endonuc_2 PF01261.19 gi|410671198|ref|YP_006923569.1| - 9.8e-15 54.4 0.1 1.3e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Hepsin-SRCR PF09272.5 gi|410671198|ref|YP_006923569.1| - 0.16 12.1 0.2 44 4.3 0.0 2.9 2 1 1 3 3 3 0 Hepsin, SRCR CTP_transf_2 PF01467.21 gi|410671200|ref|YP_006923571.1| - 6.2e-10 39.3 0.0 7.3e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase DUF4570 PF15134.1 gi|410671200|ref|YP_006923571.1| - 0.0038 17.0 0.0 0.0049 16.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4570) FAD_syn PF06574.7 gi|410671200|ref|YP_006923571.1| - 0.01 15.4 0.0 0.019 14.5 0.0 1.5 1 0 0 1 1 1 0 FAD synthetase Rad51 PF08423.6 gi|410671201|ref|YP_006923572.1| - 6.4e-89 297.2 0.0 7.7e-89 296.9 0.0 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.1 gi|410671201|ref|YP_006923572.1| - 6.7e-12 45.3 1.3 2.1e-11 43.8 0.5 2.1 3 0 0 3 3 2 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|410671201|ref|YP_006923572.1| - 2.2e-10 40.2 0.0 3.2e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|410671201|ref|YP_006923572.1| - 1.4e-09 37.4 0.0 2.5e-07 30.0 0.0 2.2 1 1 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|410671201|ref|YP_006923572.1| - 1.2e-06 27.7 0.0 1.6e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 KaiC HHH_2 PF12826.2 gi|410671201|ref|YP_006923572.1| - 1.5e-05 24.7 0.2 3.8e-05 23.4 0.2 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|410671201|ref|YP_006923572.1| - 0.00045 19.7 0.3 0.13 12.0 0.3 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|410671201|ref|YP_006923572.1| - 0.0012 18.2 0.1 0.0055 16.2 0.0 2.1 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda AAA_22 PF13401.1 gi|410671201|ref|YP_006923572.1| - 0.0027 17.8 0.0 0.008 16.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain Cdd1 PF11731.3 gi|410671201|ref|YP_006923572.1| - 0.0035 17.2 0.0 0.015 15.1 0.0 2.1 2 1 0 2 2 2 1 Pathogenicity locus DUF4332 PF14229.1 gi|410671201|ref|YP_006923572.1| - 0.006 16.5 0.2 0.025 14.5 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) NACHT PF05729.7 gi|410671201|ref|YP_006923572.1| - 0.012 15.2 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ATP-synt_ab PF00006.20 gi|410671201|ref|YP_006923572.1| - 0.016 14.7 0.0 0.03 13.8 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Arch_ATPase PF01637.13 gi|410671201|ref|YP_006923572.1| - 0.024 14.3 0.0 0.037 13.7 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA PF00004.24 gi|410671201|ref|YP_006923572.1| - 0.047 13.9 0.0 0.21 11.7 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Hydrolase_3 PF08282.7 gi|410671202|ref|YP_006923573.1| - 2.9e-33 115.5 5.5 1.6e-21 77.0 1.4 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|410671202|ref|YP_006923573.1| - 2e-08 33.8 0.1 9.7e-06 25.0 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|410671202|ref|YP_006923573.1| - 7.8e-07 29.7 3.7 0.0022 18.4 0.5 2.4 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|410671202|ref|YP_006923573.1| - 1.1e-05 25.6 4.8 0.00011 22.3 0.0 2.6 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|410671202|ref|YP_006923573.1| - 0.0095 16.1 0.4 0.073 13.2 0.3 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase PRC PF05239.11 gi|410671203|ref|YP_006923574.1| - 3.4e-12 46.0 0.2 4.1e-12 45.7 0.1 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF3859 PF12975.2 gi|410671203|ref|YP_006923574.1| - 0.15 11.7 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3859) AAA PF00004.24 gi|410671204|ref|YP_006923575.1| - 3.8e-99 328.0 0.0 3.8e-49 166.2 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|410671204|ref|YP_006923575.1| - 2.8e-31 107.2 0.8 1e-30 105.4 0.1 2.4 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|410671204|ref|YP_006923575.1| - 1.3e-15 57.6 0.0 2.6e-07 30.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|410671204|ref|YP_006923575.1| - 5e-14 52.2 0.4 3.6e-06 26.7 0.0 3.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|410671204|ref|YP_006923575.1| - 1.4e-13 50.4 0.0 5e-06 25.7 0.0 3.1 2 2 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|410671204|ref|YP_006923575.1| - 1.3e-12 47.1 0.6 9e-12 44.4 0.3 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.1 gi|410671204|ref|YP_006923575.1| - 1.9e-12 47.4 0.1 0.0016 18.6 0.0 3.9 2 2 2 4 4 3 3 AAA domain AAA_14 PF13173.1 gi|410671204|ref|YP_006923575.1| - 8.7e-12 45.0 0.0 8.1e-06 25.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|410671204|ref|YP_006923575.1| - 5.2e-11 43.4 0.0 0.00057 20.7 0.0 3.2 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|410671204|ref|YP_006923575.1| - 1.3e-09 38.3 0.0 0.00098 19.1 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain Zeta_toxin PF06414.7 gi|410671204|ref|YP_006923575.1| - 3.8e-09 35.9 0.0 0.00051 19.1 0.0 2.3 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|410671204|ref|YP_006923575.1| - 6.1e-09 35.5 0.0 0.0035 16.7 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein TIP49 PF06068.8 gi|410671204|ref|YP_006923575.1| - 1.1e-08 34.2 0.1 0.0004 19.2 0.0 2.8 3 0 0 3 3 2 2 TIP49 C-terminus AAA_33 PF13671.1 gi|410671204|ref|YP_006923575.1| - 2.2e-08 34.1 0.0 0.003 17.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|410671204|ref|YP_006923575.1| - 2.3e-08 33.6 0.2 0.0085 15.8 0.0 2.9 2 0 0 2 2 2 2 Part of AAA domain AAA_18 PF13238.1 gi|410671204|ref|YP_006923575.1| - 2.7e-08 34.1 0.0 0.0056 16.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|410671204|ref|YP_006923575.1| - 1.5e-07 31.0 4.4 0.0072 15.7 0.1 3.7 2 2 1 3 3 3 2 AAA domain Sigma54_activat PF00158.21 gi|410671204|ref|YP_006923575.1| - 3.5e-07 29.8 0.0 0.096 12.1 0.0 3.7 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_28 PF13521.1 gi|410671204|ref|YP_006923575.1| - 6.3e-07 29.4 0.0 0.015 15.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|410671204|ref|YP_006923575.1| - 1.1e-06 27.9 0.1 0.035 13.2 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI ATP-synt_ab PF00006.20 gi|410671204|ref|YP_006923575.1| - 8.8e-06 25.3 0.1 0.045 13.2 0.0 2.5 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain PhoH PF02562.11 gi|410671204|ref|YP_006923575.1| - 9.7e-06 24.9 0.0 0.23 10.6 0.0 3.1 2 0 0 2 2 2 2 PhoH-like protein Sigma54_activ_2 PF14532.1 gi|410671204|ref|YP_006923575.1| - 1.4e-05 25.1 0.0 0.2 11.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|410671204|ref|YP_006923575.1| - 1.6e-05 24.6 0.2 0.053 13.2 0.0 3.7 2 2 1 3 3 3 1 Archaeal ATPase RNA_helicase PF00910.17 gi|410671204|ref|YP_006923575.1| - 3.3e-05 24.0 0.0 0.4 10.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase ABC_tran PF00005.22 gi|410671204|ref|YP_006923575.1| - 3.6e-05 24.0 0.0 0.43 10.8 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_3 PF07726.6 gi|410671204|ref|YP_006923575.1| - 4.5e-05 23.0 0.0 0.13 11.8 0.0 2.8 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|410671204|ref|YP_006923575.1| - 6.7e-05 22.1 2.2 0.19 10.8 0.0 3.7 3 1 0 4 4 3 1 KaiC Bac_DnaA PF00308.13 gi|410671204|ref|YP_006923575.1| - 0.00016 21.4 0.0 0.14 11.8 0.0 3.0 3 1 1 4 4 2 1 Bacterial dnaA protein NTPase_1 PF03266.10 gi|410671204|ref|YP_006923575.1| - 0.00017 21.3 3.2 1.9 8.1 0.0 4.0 3 1 1 4 4 4 1 NTPase Parvo_NS1 PF01057.12 gi|410671204|ref|YP_006923575.1| - 0.00021 20.2 0.1 0.34 9.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.4 gi|410671204|ref|YP_006923575.1| - 0.00021 20.3 0.0 0.29 10.0 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.8 gi|410671204|ref|YP_006923575.1| - 0.00042 19.3 0.0 0.5 9.2 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|410671204|ref|YP_006923575.1| - 0.00057 18.8 0.0 0.71 8.6 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain Guanylate_kin PF00625.16 gi|410671204|ref|YP_006923575.1| - 0.00085 18.8 0.5 5.3 6.4 0.0 3.9 2 2 2 4 4 4 0 Guanylate kinase ResIII PF04851.10 gi|410671204|ref|YP_006923575.1| - 0.00085 19.1 0.0 0.93 9.2 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Cytidylate_kin2 PF13189.1 gi|410671204|ref|YP_006923575.1| - 0.0013 18.7 0.1 3.2 7.6 0.0 2.9 3 0 0 3 3 3 0 Cytidylate kinase-like family Vps4_C PF09336.5 gi|410671204|ref|YP_006923575.1| - 0.0017 18.2 0.0 0.11 12.4 0.0 2.7 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_24 PF13479.1 gi|410671204|ref|YP_006923575.1| - 0.0017 17.9 0.0 2.3 7.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.13 gi|410671204|ref|YP_006923575.1| - 0.0017 17.8 0.0 0.25 10.8 0.0 2.5 3 0 0 3 3 2 1 Viral (Superfamily 1) RNA helicase SKI PF01202.17 gi|410671204|ref|YP_006923575.1| - 0.0024 17.7 0.0 2.5 7.9 0.0 2.7 2 0 0 2 2 2 1 Shikimate kinase AAA_30 PF13604.1 gi|410671204|ref|YP_006923575.1| - 0.0038 16.8 0.1 2.9 7.4 0.0 2.8 3 0 0 3 3 2 1 AAA domain AAA_11 PF13086.1 gi|410671204|ref|YP_006923575.1| - 0.0038 16.8 0.0 2.1 7.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|410671204|ref|YP_006923575.1| - 0.0073 15.2 0.0 1.7 7.5 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein NACHT PF05729.7 gi|410671204|ref|YP_006923575.1| - 0.0091 15.6 0.0 10 5.7 0.0 3.3 4 0 0 4 4 3 0 NACHT domain IPT PF01745.11 gi|410671204|ref|YP_006923575.1| - 0.02 14.1 0.2 1 8.5 0.0 2.7 3 0 0 3 3 3 0 Isopentenyl transferase KTI12 PF08433.5 gi|410671204|ref|YP_006923575.1| - 0.02 14.1 0.0 4.5 6.3 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 UPF0079 PF02367.12 gi|410671204|ref|YP_006923575.1| - 0.049 13.2 0.1 22 4.7 0.0 3.1 2 1 1 3 3 3 0 Uncharacterised P-loop hydrolase UPF0079 PduV-EutP PF10662.4 gi|410671204|ref|YP_006923575.1| - 0.072 12.5 0.0 10 5.5 0.0 2.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_23 PF13476.1 gi|410671204|ref|YP_006923575.1| - 0.081 13.2 0.0 15 5.7 0.0 2.7 2 0 0 2 2 2 0 AAA domain TRAM PF01938.15 gi|410671205|ref|YP_006923576.1| - 9.4e-17 60.5 0.9 1.1e-16 60.3 0.6 1.1 1 0 0 1 1 1 1 TRAM domain S1 PF00575.18 gi|410671205|ref|YP_006923576.1| - 0.3 11.2 1.5 0.75 9.9 1.0 1.7 1 1 0 1 1 1 0 S1 RNA binding domain DUF378 PF04070.7 gi|410671206|ref|YP_006923577.1| - 1.1e-26 92.1 5.5 1.3e-26 91.9 3.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF378) TauE PF01925.14 gi|410671206|ref|YP_006923577.1| - 0.0021 17.5 1.1 0.0021 17.5 0.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE RseC_MucC PF04246.7 gi|410671206|ref|YP_006923577.1| - 0.073 12.6 0.8 0.085 12.4 0.3 1.3 1 1 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC AIRS_C PF02769.17 gi|410671207|ref|YP_006923578.1| - 2.3e-47 160.8 4.6 3.8e-30 104.9 0.1 2.5 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|410671207|ref|YP_006923578.1| - 1.8e-41 140.3 1.5 6.9e-25 87.1 0.1 3.1 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain DUF192 PF02643.10 gi|410671208|ref|YP_006923579.1| - 1e-18 66.9 0.0 1.1e-18 66.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 SUI1 PF01253.17 gi|410671209|ref|YP_006923580.1| - 2.9e-23 81.4 0.2 3.5e-23 81.2 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 AHS2 PF02626.10 gi|410671209|ref|YP_006923580.1| - 0.14 11.4 0.0 0.14 11.4 0.0 1.0 1 0 0 1 1 1 0 Allophanate hydrolase subunit 2 Aminotran_5 PF00266.14 gi|410671210|ref|YP_006923581.1| - 1.7e-91 306.7 0.0 1.9e-91 306.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|410671210|ref|YP_006923581.1| - 4.2e-09 35.9 0.0 4.8e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|410671210|ref|YP_006923581.1| - 5.5e-06 25.6 0.8 7.9e-06 25.1 0.6 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family NifU_N PF01592.11 gi|410671211|ref|YP_006923582.1| - 3.2e-39 133.7 0.2 3.5e-39 133.6 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain GCV_H PF01597.14 gi|410671211|ref|YP_006923582.1| - 0.055 13.1 0.8 0.25 11.0 0.5 1.9 1 1 0 1 1 1 0 Glycine cleavage H-protein HTH_3 PF01381.17 gi|410671212|ref|YP_006923583.1| - 3.4e-06 26.7 0.4 1.1e-05 25.1 0.3 1.8 2 0 0 2 2 2 1 Helix-turn-helix Sigma70_r4 PF04545.11 gi|410671212|ref|YP_006923583.1| - 7.5e-05 21.9 2.3 0.00014 21.1 0.1 2.3 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_37 PF13744.1 gi|410671212|ref|YP_006923583.1| - 0.0001 22.0 0.2 0.00019 21.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|410671212|ref|YP_006923583.1| - 0.00011 21.6 0.6 0.00041 19.9 0.4 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.1 gi|410671212|ref|YP_006923583.1| - 0.00079 18.7 0.2 0.0017 17.6 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|410671212|ref|YP_006923583.1| - 0.00096 19.1 0.2 0.0077 16.2 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|410671212|ref|YP_006923583.1| - 0.0012 18.3 0.6 0.012 15.0 0.3 2.5 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_31 PF13560.1 gi|410671212|ref|YP_006923583.1| - 0.0013 18.9 0.4 0.0024 18.0 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|410671212|ref|YP_006923583.1| - 0.0021 18.0 0.0 0.11 12.6 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|410671212|ref|YP_006923583.1| - 0.0076 16.4 0.0 0.017 15.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|410671212|ref|YP_006923583.1| - 0.011 15.3 0.2 0.021 14.4 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.15 gi|410671212|ref|YP_006923583.1| - 0.035 13.7 0.1 0.21 11.2 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Cro PF09048.5 gi|410671212|ref|YP_006923583.1| - 0.063 12.9 0.1 0.097 12.3 0.1 1.3 1 0 0 1 1 1 0 Cro HTH_1 PF00126.22 gi|410671212|ref|YP_006923583.1| - 0.073 12.8 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_8 PF02954.14 gi|410671212|ref|YP_006923583.1| - 0.098 12.2 0.1 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_AsnC-type PF13404.1 gi|410671212|ref|YP_006923583.1| - 0.11 12.0 0.8 1.7 8.2 0.1 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF134 PF02001.11 gi|410671212|ref|YP_006923583.1| - 0.12 12.3 0.1 0.29 11.0 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function DUF134 DUF650 PF04894.7 gi|410671213|ref|YP_006923584.1| - 5.3e-102 340.9 0.0 8.5e-102 340.2 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|410671213|ref|YP_006923584.1| - 2e-39 133.5 0.1 3.2e-39 132.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) PHO4 PF01384.15 gi|410671214|ref|YP_006923585.1| - 5.3e-106 353.9 37.6 6.4e-106 353.6 26.0 1.1 1 0 0 1 1 1 1 Phosphate transporter family DUF3318 PF11780.3 gi|410671214|ref|YP_006923585.1| - 4.6 6.7 5.6 15 5.1 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3318) PhoU_div PF01865.11 gi|410671215|ref|YP_006923586.1| - 6.3e-56 188.9 1.2 7e-56 188.7 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|410671215|ref|YP_006923586.1| - 6.3e-05 23.3 1.4 0.021 15.2 0.5 2.4 2 1 0 2 2 2 2 PhoU domain CorA PF01544.13 gi|410671215|ref|YP_006923586.1| - 0.36 9.8 5.0 0.26 10.2 1.0 2.0 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein NAD_binding_8 PF13450.1 gi|410671216|ref|YP_006923587.1| - 2.7e-17 62.5 0.1 5e-17 61.6 0.1 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|410671216|ref|YP_006923587.1| - 6.1e-17 61.8 0.1 2.8e-15 56.3 0.0 2.8 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase DAO PF01266.19 gi|410671216|ref|YP_006923587.1| - 2.3e-11 43.2 0.3 2.5e-08 33.2 0.2 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|410671216|ref|YP_006923587.1| - 6.2e-10 38.4 0.7 1.2e-07 31.0 0.1 2.9 3 0 0 3 3 3 1 FAD binding domain HI0933_like PF03486.9 gi|410671216|ref|YP_006923587.1| - 2e-07 29.8 1.2 4.8e-06 25.3 0.0 2.7 2 1 1 3 3 3 1 HI0933-like protein FAD_oxidored PF12831.2 gi|410671216|ref|YP_006923587.1| - 4.9e-07 29.1 0.0 9.8e-07 28.1 0.0 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|410671216|ref|YP_006923587.1| - 6e-07 28.8 0.3 1.4e-06 27.6 0.1 1.6 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.14 gi|410671216|ref|YP_006923587.1| - 6.9e-06 25.3 0.4 1.2e-05 24.5 0.1 1.5 2 0 0 2 2 2 1 FAD binding domain GDI PF00996.13 gi|410671216|ref|YP_006923587.1| - 9.1e-06 24.2 2.1 2e-05 23.1 0.2 2.3 3 0 0 3 3 3 1 GDP dissociation inhibitor Pyr_redox PF00070.22 gi|410671216|ref|YP_006923587.1| - 0.00058 20.2 1.5 0.0013 19.1 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|410671216|ref|YP_006923587.1| - 0.00071 19.5 0.0 0.0018 18.1 0.0 1.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|410671216|ref|YP_006923587.1| - 0.0012 17.8 0.7 0.003 16.4 0.0 2.0 3 0 0 3 3 3 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|410671216|ref|YP_006923587.1| - 0.0022 18.1 0.3 0.0053 16.8 0.1 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|410671216|ref|YP_006923587.1| - 0.0042 16.0 0.1 0.014 14.3 0.1 1.7 2 0 0 2 2 2 1 Lycopene cyclase protein GMC_oxred_N PF00732.14 gi|410671216|ref|YP_006923587.1| - 0.0083 15.3 0.1 0.36 9.9 0.0 2.2 2 0 0 2 2 2 1 GMC oxidoreductase NAD_binding_9 PF13454.1 gi|410671216|ref|YP_006923587.1| - 0.044 13.5 0.0 0.1 12.3 0.0 1.7 1 0 0 1 1 1 0 FAD-NAD(P)-binding ApbA PF02558.11 gi|410671216|ref|YP_006923587.1| - 0.11 11.9 0.2 0.25 10.7 0.1 1.6 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Trp_halogenase PF04820.9 gi|410671216|ref|YP_006923587.1| - 0.13 10.8 0.1 0.22 10.1 0.1 1.3 1 0 0 1 1 1 0 Tryptophan halogenase SAICAR_synt PF01259.13 gi|410671217|ref|YP_006923588.1| - 1.2e-55 188.3 1.0 1.3e-55 188.2 0.7 1.0 1 0 0 1 1 1 1 SAICAR synthetase NikR_C PF08753.6 gi|410671218|ref|YP_006923589.1| - 1.8e-33 114.2 1.7 2.5e-33 113.8 1.2 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|410671218|ref|YP_006923589.1| - 1.9e-08 33.8 0.0 4.9e-08 32.5 0.0 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HTH_5 PF01022.15 gi|410671219|ref|YP_006923590.1| - 1.5e-13 50.1 1.1 2.1e-13 49.7 0.8 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|410671219|ref|YP_006923590.1| - 8.6e-13 47.8 0.1 1.1e-12 47.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4364 PF14277.1 gi|410671219|ref|YP_006923590.1| - 0.0021 17.6 0.1 0.0026 17.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF2513 PF10711.4 gi|410671219|ref|YP_006923590.1| - 0.0023 18.0 0.0 0.003 17.5 0.0 1.3 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_45 PF14947.1 gi|410671219|ref|YP_006923590.1| - 0.0031 17.3 0.0 0.0041 16.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|410671219|ref|YP_006923590.1| - 0.007 16.3 0.1 0.01 15.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|410671219|ref|YP_006923590.1| - 0.068 12.9 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family ArsR PF09824.4 gi|410671219|ref|YP_006923590.1| - 0.071 12.4 0.0 0.094 12.0 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator DUF2806 PF10987.3 gi|410671219|ref|YP_006923590.1| - 0.073 12.5 0.1 0.078 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2806) Rio2_N PF09202.6 gi|410671219|ref|YP_006923590.1| - 0.08 13.0 0.3 0.17 11.9 0.2 1.6 1 1 0 1 1 1 0 Rio2, N-terminal Hemerythrin PF01814.18 gi|410671220|ref|YP_006923591.1| - 2.4e-18 66.5 0.1 2.7e-18 66.4 0.1 1.0 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain Methyltransf_7 PF03492.10 gi|410671220|ref|YP_006923591.1| - 0.032 12.9 0.1 0.041 12.6 0.1 1.1 1 0 0 1 1 1 0 SAM dependent carboxyl methyltransferase DUF2294 PF10057.4 gi|410671220|ref|YP_006923591.1| - 0.043 13.4 0.4 0.09 12.4 0.3 1.5 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2294) E1-E2_ATPase PF00122.15 gi|410671221|ref|YP_006923592.1| - 2.3e-71 239.5 3.9 2.3e-71 239.5 2.7 2.7 3 1 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|410671221|ref|YP_006923592.1| - 1.7e-38 131.9 14.1 1.7e-38 131.9 9.8 2.6 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|410671221|ref|YP_006923592.1| - 1.1e-35 124.0 0.0 4.9e-35 121.8 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|410671221|ref|YP_006923592.1| - 9.6e-25 86.3 0.0 2.6e-24 84.9 0.0 1.8 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Cation_ATPase_N PF00690.21 gi|410671221|ref|YP_006923592.1| - 5.1e-20 70.6 0.0 5.1e-20 70.6 0.0 2.3 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|410671221|ref|YP_006923592.1| - 6.2e-17 62.3 0.0 1.7e-16 60.9 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|410671221|ref|YP_006923592.1| - 1.7e-05 24.5 0.5 0.00086 18.9 0.4 2.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Amidohydro_4 PF13147.1 gi|410671221|ref|YP_006923592.1| - 0.002 18.2 0.0 0.27 11.2 0.0 2.2 1 1 1 2 2 2 1 Amidohydrolase PrgI PF12666.2 gi|410671221|ref|YP_006923592.1| - 0.023 14.8 0.5 0.023 14.8 0.3 4.0 5 0 0 5 5 3 0 PrgI family protein HAD_2 PF13419.1 gi|410671221|ref|YP_006923592.1| - 0.11 12.6 0.0 0.67 10.1 0.0 2.2 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase Ribosomal_S13 PF00416.17 gi|410671221|ref|YP_006923592.1| - 0.47 10.9 2.5 26 5.3 0.1 3.6 3 1 1 4 4 4 0 Ribosomal protein S13/S18 PfkB PF00294.19 gi|410671222|ref|YP_006923593.1| - 5.5e-26 91.3 0.0 6.7e-26 91.1 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Vinculin PF01044.14 gi|410671222|ref|YP_006923593.1| - 0.081 10.9 0.0 0.1 10.5 0.0 1.0 1 0 0 1 1 1 0 Vinculin family PAS_3 PF08447.6 gi|410671223|ref|YP_006923594.1| - 8.3e-13 48.2 0.0 1.2e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|410671223|ref|YP_006923594.1| - 0.00021 21.0 0.0 0.00027 20.6 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|410671223|ref|YP_006923594.1| - 0.00022 21.5 0.0 0.00033 20.9 0.0 1.3 1 0 0 1 1 1 1 PAS domain DegV PF02645.11 gi|410671223|ref|YP_006923594.1| - 0.078 12.0 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein, DegV family COG1307 Terminase_2 PF03592.11 gi|410671223|ref|YP_006923594.1| - 0.098 12.9 0.2 0.17 12.1 0.0 1.5 2 0 0 2 2 2 0 Terminase small subunit PhosphMutase PF10143.4 gi|410671223|ref|YP_006923594.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase FeThRed_B PF02943.10 gi|410671224|ref|YP_006923595.1| - 4.9e-14 51.9 3.2 5.4e-14 51.8 2.2 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain EGF PF00008.22 gi|410671224|ref|YP_006923595.1| - 4.6 7.3 8.7 0.31 11.0 0.8 2.5 2 1 1 3 3 3 0 EGF-like domain Lactamase_B PF00753.22 gi|410671225|ref|YP_006923596.1| - 4.1e-23 82.0 0.0 5.2e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|410671225|ref|YP_006923596.1| - 1.1e-13 51.4 0.0 2.1e-13 50.4 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|410671225|ref|YP_006923596.1| - 0.00046 20.1 0.0 0.0008 19.4 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain Lactamase_B_2 PF12706.2 gi|410671225|ref|YP_006923596.1| - 0.00082 18.9 0.1 0.002 17.6 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Peripla_BP_6 PF13458.1 gi|410671225|ref|YP_006923596.1| - 0.014 14.7 0.1 1.5 8.0 0.0 2.3 1 1 1 2 2 2 0 Periplasmic binding protein Flavodoxin_3 PF12641.2 gi|410671225|ref|YP_006923596.1| - 0.092 12.1 0.0 0.24 10.8 0.0 1.7 2 0 0 2 2 2 0 Flavodoxin domain Rubrerythrin PF02915.12 gi|410671226|ref|YP_006923597.1| - 2.9e-12 47.0 11.3 5.4e-06 26.7 0.9 2.2 2 1 0 2 2 2 2 Rubrerythrin Ferritin_2 PF13668.1 gi|410671226|ref|YP_006923597.1| - 1.2e-07 31.7 7.2 0.00088 19.2 0.7 2.1 2 0 0 2 2 2 2 Ferritin-like domain DUF2383 PF09537.5 gi|410671226|ref|YP_006923597.1| - 0.00094 19.4 3.9 0.35 11.1 0.1 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) DUF1451 PF07295.6 gi|410671226|ref|YP_006923597.1| - 0.055 13.2 0.6 0.085 12.6 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) MRF_C1 PF13887.1 gi|410671226|ref|YP_006923597.1| - 0.11 11.5 0.1 0.29 10.1 0.1 1.8 1 0 0 1 1 1 0 Myelin gene regulatory factor -C-terminal domain 1 NAD_binding_5 PF07994.7 gi|410671227|ref|YP_006923598.1| - 5.4e-57 193.5 0.0 1.4e-56 192.1 0.0 1.6 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|410671227|ref|YP_006923598.1| - 3.6e-34 116.9 0.0 6.3e-34 116.1 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Flavoprotein PF02441.14 gi|410671229|ref|YP_006923600.1| - 5.1e-21 74.6 0.0 7.3e-21 74.1 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein NAD_binding_1 PF00175.16 gi|410671230|ref|YP_006923601.1| - 2.7e-18 66.5 0.0 3.8e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|410671230|ref|YP_006923601.1| - 3.7e-15 55.8 0.0 5.7e-15 55.2 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|410671230|ref|YP_006923601.1| - 0.00063 19.6 0.0 0.023 14.6 0.0 2.2 1 1 1 2 2 2 1 Ferric reductase NAD binding domain FMN_red PF03358.10 gi|410671231|ref|YP_006923602.1| - 4.6e-28 97.6 0.0 6.1e-28 97.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|410671231|ref|YP_006923602.1| - 0.00011 21.8 0.0 0.00016 21.2 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Fer4_4 PF12800.2 gi|410671231|ref|YP_006923602.1| - 3.3 8.2 5.9 0.66 10.4 1.7 1.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|410671232|ref|YP_006923603.1| - 3.7e-15 54.7 15.1 1.1e-07 31.1 1.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|410671232|ref|YP_006923603.1| - 1.4e-11 44.5 9.5 1.9e-11 44.1 6.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410671232|ref|YP_006923603.1| - 1.2e-10 41.4 20.9 1.8e-08 34.5 8.2 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410671232|ref|YP_006923603.1| - 3.9e-10 39.0 12.5 7.2e-05 22.4 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|410671232|ref|YP_006923603.1| - 1.3e-09 37.6 23.8 2.1e-07 30.6 8.5 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410671232|ref|YP_006923603.1| - 1.4e-09 37.3 13.1 9.4e-05 22.1 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|410671232|ref|YP_006923603.1| - 1.2e-08 34.6 10.4 1.5e-08 34.3 7.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410671232|ref|YP_006923603.1| - 1.7e-08 35.1 9.9 0.00073 20.2 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|410671232|ref|YP_006923603.1| - 2.6e-06 27.5 14.6 0.0033 17.8 3.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|410671232|ref|YP_006923603.1| - 3.4e-06 27.5 13.0 2.6e-05 24.6 9.0 2.1 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|410671232|ref|YP_006923603.1| - 2.5e-05 24.2 10.2 0.25 11.4 0.7 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410671232|ref|YP_006923603.1| - 4.2e-05 23.8 9.5 0.0057 16.9 1.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410671232|ref|YP_006923603.1| - 0.00018 21.5 13.9 0.00054 20.0 2.9 2.4 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|410671232|ref|YP_006923603.1| - 0.00018 21.8 14.0 0.0085 16.5 3.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|410671232|ref|YP_006923603.1| - 0.00095 19.0 4.0 0.0019 18.0 2.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|410671232|ref|YP_006923603.1| - 0.0072 16.6 16.8 0.54 10.6 11.6 2.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain FLO_LFY PF01698.11 gi|410671232|ref|YP_006923603.1| - 0.065 12.0 0.0 0.074 11.8 0.0 1.0 1 0 0 1 1 1 0 Floricaula / Leafy protein CMD PF02627.15 gi|410671234|ref|YP_006923605.1| - 3.4e-19 68.4 0.3 4.2e-19 68.1 0.2 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PA26 PF04636.8 gi|410671234|ref|YP_006923605.1| - 0.0064 15.2 0.0 0.0068 15.1 0.0 1.0 1 0 0 1 1 1 1 PA26 p53-induced protein (sestrin) DUF2180 PF09947.4 gi|410671235|ref|YP_006923606.1| - 8.6e-24 83.0 6.8 9.7e-24 82.9 4.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) Tnp_zf-ribbon_2 PF13842.1 gi|410671235|ref|YP_006923606.1| - 1.1 9.7 6.1 0.35 11.2 1.4 2.0 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-RING_3 PF14369.1 gi|410671235|ref|YP_006923606.1| - 2.4 8.2 5.7 28 4.8 0.0 2.6 2 1 0 2 2 2 0 zinc-finger DUF2180 PF09947.4 gi|410671236|ref|YP_006923607.1| - 1.9e-27 94.7 12.3 2.4e-27 94.4 8.5 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) zf-dskA_traR PF01258.12 gi|410671236|ref|YP_006923607.1| - 0.12 12.1 2.8 7 6.4 0.1 2.7 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger v110 PF01639.12 gi|410671236|ref|YP_006923607.1| - 0.15 11.6 7.5 0.17 11.4 5.2 1.2 1 0 0 1 1 1 0 Viral family 110 FYVE PF01363.16 gi|410671236|ref|YP_006923607.1| - 0.41 10.5 7.6 0.68 9.8 5.2 1.4 1 1 0 1 1 1 0 FYVE zinc finger zf-AD PF07776.10 gi|410671236|ref|YP_006923607.1| - 1.3 9.1 5.5 1.2 9.1 2.9 1.7 1 1 0 1 1 1 0 Zinc-finger associated domain (zf-AD) Tnp_zf-ribbon_2 PF13842.1 gi|410671236|ref|YP_006923607.1| - 2.1 8.8 10.3 0.51 10.7 1.8 2.5 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-UBR PF02207.15 gi|410671236|ref|YP_006923607.1| - 2.8 7.7 11.0 0.23 11.2 2.5 2.2 1 1 1 2 2 2 0 Putative zinc finger in N-recognin (UBR box) LIM PF00412.17 gi|410671236|ref|YP_006923607.1| - 6.7 6.8 10.5 18 5.5 2.1 2.6 1 1 0 2 2 2 0 LIM domain Bac_luciferase PF00296.15 gi|410671238|ref|YP_006923609.1| - 4.2e-66 223.1 0.0 4.6e-66 223.0 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase PHP PF02811.14 gi|410671238|ref|YP_006923609.1| - 0.11 12.2 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 PHP domain DUF1522 PF07482.6 gi|410671238|ref|YP_006923609.1| - 0.14 12.3 2.0 0.63 10.2 0.4 2.3 2 1 0 2 2 2 0 Domain of Unknown Function (DUF1522) FrhB_FdhB_C PF04432.8 gi|410671239|ref|YP_006923610.1| - 8.6e-41 139.0 0.9 1.3e-40 138.4 0.0 1.7 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|410671239|ref|YP_006923610.1| - 8.1e-18 64.0 0.0 1.5e-17 63.2 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.22 gi|410671239|ref|YP_006923610.1| - 5.6e-08 32.0 20.8 1.2e-06 27.8 4.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|410671239|ref|YP_006923610.1| - 3.8e-07 30.3 9.1 3.8e-07 30.3 6.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410671239|ref|YP_006923610.1| - 8.8e-07 28.6 8.1 8.8e-07 28.6 5.6 1.9 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410671239|ref|YP_006923610.1| - 1.9e-06 28.0 8.0 1.9e-06 28.0 5.5 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|410671239|ref|YP_006923610.1| - 4.2e-05 24.0 7.5 0.028 14.9 0.9 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|410671239|ref|YP_006923610.1| - 0.00011 22.9 14.2 0.00013 22.6 7.0 2.7 2 1 1 3 3 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|410671239|ref|YP_006923610.1| - 0.00039 20.1 18.4 0.0035 17.1 3.5 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|410671239|ref|YP_006923610.1| - 0.00051 19.7 5.1 0.00051 19.7 3.5 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|410671239|ref|YP_006923610.1| - 0.00089 19.2 9.2 0.00089 19.2 6.4 2.3 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410671239|ref|YP_006923610.1| - 0.00089 19.0 25.7 0.0031 17.3 9.9 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410671239|ref|YP_006923610.1| - 0.0048 17.1 3.8 0.0048 17.1 2.6 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|410671239|ref|YP_006923610.1| - 0.01 16.1 8.1 0.01 16.1 5.6 2.4 2 1 1 3 3 2 0 4Fe-4S dicluster domain DUF4430 PF14478.1 gi|410671239|ref|YP_006923610.1| - 0.041 13.9 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4430) Fer4_13 PF13370.1 gi|410671239|ref|YP_006923610.1| - 0.24 11.8 12.4 0.66 10.4 3.3 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|410671239|ref|YP_006923610.1| - 9.5 6.7 20.4 2.1 8.8 3.6 3.0 2 1 1 3 3 2 0 4Fe-4S dicluster domain CTP_transf_2 PF01467.21 gi|410671240|ref|YP_006923611.1| - 1.6e-20 73.7 0.0 2.3e-20 73.2 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase Citrate_ly_lig PF08218.6 gi|410671240|ref|YP_006923611.1| - 0.14 11.6 0.0 1.4 8.3 0.0 2.2 1 1 1 2 2 2 0 Citrate lyase ligase C-terminal domain Fer2_BFD PF04324.10 gi|410671241|ref|YP_006923612.1| - 9.6e-06 25.5 0.7 2.3e-05 24.3 0.5 1.7 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain DUF4143 PF13635.1 gi|410671241|ref|YP_006923612.1| - 0.1 12.7 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) Zn_ribbon_2 PF12674.2 gi|410671241|ref|YP_006923612.1| - 0.66 10.3 7.3 1.3 9.4 1.1 2.3 2 0 0 2 2 2 0 Putative zinc ribbon domain Methyltransf_31 PF13847.1 gi|410671242|ref|YP_006923613.1| - 1.3e-40 138.4 0.1 2.8e-40 137.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|410671242|ref|YP_006923613.1| - 3.5e-24 85.1 0.0 7.7e-24 84.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410671242|ref|YP_006923613.1| - 2.6e-18 66.6 0.1 6e-18 65.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|410671242|ref|YP_006923613.1| - 1.1e-17 63.9 0.5 2.1e-17 63.0 0.1 1.6 2 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|410671242|ref|YP_006923613.1| - 1.3e-16 60.8 0.0 2.7e-16 59.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|410671242|ref|YP_006923613.1| - 2.5e-14 53.2 0.0 4.3e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|410671242|ref|YP_006923613.1| - 2.3e-13 50.4 0.0 4.5e-13 49.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain HTH_5 PF01022.15 gi|410671242|ref|YP_006923613.1| - 6.3e-12 44.9 0.1 4.4e-11 42.2 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Methyltransf_23 PF13489.1 gi|410671242|ref|YP_006923613.1| - 2.3e-11 43.6 0.0 5.3e-11 42.4 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain MTS PF05175.9 gi|410671242|ref|YP_006923613.1| - 2.4e-11 43.3 0.0 4.4e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|410671242|ref|YP_006923613.1| - 1.4e-10 41.0 0.0 2.4e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HTH_20 PF12840.2 gi|410671242|ref|YP_006923613.1| - 6.2e-10 38.7 0.0 1.2e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain UPF0020 PF01170.13 gi|410671242|ref|YP_006923613.1| - 1.1e-07 31.6 0.0 2.5e-07 30.4 0.0 1.7 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|410671242|ref|YP_006923613.1| - 4.3e-06 26.0 0.0 6.8e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.15 gi|410671242|ref|YP_006923613.1| - 8.9e-06 24.9 0.0 1.4e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|410671242|ref|YP_006923613.1| - 1.2e-05 24.9 0.2 4e-05 23.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|410671242|ref|YP_006923613.1| - 8e-05 22.2 0.0 0.00013 21.5 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_8 PF05148.10 gi|410671242|ref|YP_006923613.1| - 9.9e-05 22.0 0.1 0.00033 20.3 0.1 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase FtsJ PF01728.14 gi|410671242|ref|YP_006923613.1| - 0.0033 17.4 0.1 0.0086 16.0 0.0 1.7 2 0 0 2 2 2 1 FtsJ-like methyltransferase Methyltransf_3 PF01596.12 gi|410671242|ref|YP_006923613.1| - 0.0089 15.0 0.0 0.017 14.2 0.0 1.5 1 0 0 1 1 1 1 O-methyltransferase GCD14 PF08704.5 gi|410671242|ref|YP_006923613.1| - 0.011 15.2 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit GidB PF02527.10 gi|410671242|ref|YP_006923613.1| - 0.019 14.0 0.1 0.042 12.9 0.0 1.5 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G HTH_Crp_2 PF13545.1 gi|410671242|ref|YP_006923613.1| - 0.026 14.2 0.1 1.2 9.0 0.0 2.8 3 0 0 3 3 2 0 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|410671242|ref|YP_006923613.1| - 0.029 14.0 0.0 0.092 12.4 0.0 1.9 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB Methyltransf_4 PF02390.12 gi|410671242|ref|YP_006923613.1| - 0.034 13.1 0.0 0.18 10.8 0.0 1.8 1 1 1 2 2 2 0 Putative methyltransferase Methyltransf_24 PF13578.1 gi|410671242|ref|YP_006923613.1| - 0.049 14.4 0.0 0.1 13.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Penicillinase_R PF03965.11 gi|410671242|ref|YP_006923613.1| - 0.058 13.4 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor Met_10 PF02475.11 gi|410671242|ref|YP_006923613.1| - 0.061 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 Met-10+ like-protein HTH_27 PF13463.1 gi|410671242|ref|YP_006923613.1| - 0.1 12.9 0.0 0.21 11.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain tRNA-synt_1e PF01406.14 gi|410671243|ref|YP_006923614.1| - 2.6e-119 397.8 0.0 3.3e-119 397.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|410671243|ref|YP_006923614.1| - 1.7e-20 73.0 0.1 4e-09 35.6 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.6 gi|410671243|ref|YP_006923614.1| - 2e-10 40.7 0.0 4.8e-10 39.5 0.0 1.6 1 0 0 1 1 1 1 DALR domain tRNA-synt_1f PF01921.13 gi|410671243|ref|YP_006923614.1| - 4.5e-10 38.7 0.1 1.7e-07 30.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|410671243|ref|YP_006923614.1| - 2.5e-09 35.7 0.0 1.4e-06 26.6 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.14 gi|410671243|ref|YP_006923614.1| - 0.00057 18.8 0.0 0.012 14.4 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (R) 5TM-5TMR_LYT PF07694.7 gi|410671245|ref|YP_006923616.1| - 4.1e-26 91.3 16.9 6.7e-26 90.6 11.7 1.3 1 0 0 1 1 1 1 5TMR of 5TMR-LYT HATPase_c PF02518.21 gi|410671245|ref|YP_006923616.1| - 5.6e-21 74.3 0.0 1.5e-20 72.9 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|410671245|ref|YP_006923616.1| - 2.9e-13 49.5 1.3 2.2e-12 46.7 0.1 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|410671245|ref|YP_006923616.1| - 2.5e-10 41.0 0.0 1.4e-09 38.6 0.0 2.1 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|410671245|ref|YP_006923616.1| - 3.2e-10 40.1 0.1 6.3e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.5 gi|410671245|ref|YP_006923616.1| - 2.2e-09 37.2 0.0 6.1e-09 35.8 0.0 1.8 2 0 0 2 2 2 1 PAS fold GAF PF01590.21 gi|410671245|ref|YP_006923616.1| - 5.7e-07 29.7 0.0 1.2e-06 28.7 0.0 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.1 gi|410671245|ref|YP_006923616.1| - 0.00049 19.7 0.0 0.0012 18.5 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS_9 PF13426.1 gi|410671245|ref|YP_006923616.1| - 0.00075 19.8 0.0 0.0018 18.6 0.0 1.7 1 0 0 1 1 1 1 PAS domain DUF4635 PF15466.1 gi|410671245|ref|YP_006923616.1| - 0.012 14.9 0.3 0.031 13.5 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4635) RRF_GI PF12614.3 gi|410671245|ref|YP_006923616.1| - 0.073 12.8 0.6 0.14 11.9 0.4 1.4 1 0 0 1 1 1 0 Ribosome recycling factor Response_reg PF00072.19 gi|410671246|ref|YP_006923617.1| - 2.3e-23 82.3 0.1 2.7e-23 82.1 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain PfkB PF00294.19 gi|410671246|ref|YP_006923617.1| - 0.025 13.7 0.0 0.062 12.4 0.0 1.6 2 0 0 2 2 2 0 pfkB family carbohydrate kinase HATPase_c PF02518.21 gi|410671247|ref|YP_006923618.1| - 2e-34 117.6 0.0 5.3e-34 116.2 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|410671247|ref|YP_006923618.1| - 7.1e-34 115.7 0.1 8.7e-20 70.6 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|410671247|ref|YP_006923618.1| - 3.3e-18 65.9 0.0 1.4e-08 35.0 0.0 2.5 2 0 0 2 2 2 2 PAS domain HisKA PF00512.20 gi|410671247|ref|YP_006923618.1| - 3.6e-17 62.1 0.3 1.8e-16 59.8 0.0 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.19 gi|410671247|ref|YP_006923618.1| - 5.2e-15 55.4 0.0 8.9e-15 54.6 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.19 gi|410671247|ref|YP_006923618.1| - 4.8e-11 42.4 0.0 2.6e-09 36.8 0.0 2.8 3 0 0 3 3 3 1 PAS fold PAS_11 PF14598.1 gi|410671247|ref|YP_006923618.1| - 1.4e-10 41.1 0.0 8.9e-06 25.6 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|410671247|ref|YP_006923618.1| - 6.7e-08 32.5 0.0 9.7e-07 28.8 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|410671247|ref|YP_006923618.1| - 0.00032 20.4 0.1 0.035 13.9 0.0 2.7 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|410671247|ref|YP_006923618.1| - 0.068 12.8 0.0 0.3 10.7 0.0 2.2 3 0 0 3 3 3 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAA_18 PF13238.1 gi|410671248|ref|YP_006923619.1| - 1.7e-24 86.5 0.8 3e-24 85.7 0.6 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|410671248|ref|YP_006923619.1| - 1.3e-15 58.2 0.5 1e-14 55.3 0.1 1.9 1 1 1 2 2 2 1 AAA domain SKI PF01202.17 gi|410671248|ref|YP_006923619.1| - 1.3e-05 25.1 0.7 0.0003 20.6 0.5 2.1 1 1 0 1 1 1 1 Shikimate kinase AAA_33 PF13671.1 gi|410671248|ref|YP_006923619.1| - 6.4e-05 22.8 1.5 0.077 12.8 0.1 2.6 1 1 2 3 3 3 2 AAA domain AAA_28 PF13521.1 gi|410671248|ref|YP_006923619.1| - 0.00041 20.3 4.1 0.0025 17.7 2.9 2.3 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|410671248|ref|YP_006923619.1| - 0.00088 18.7 0.5 0.17 11.2 0.1 2.2 2 0 0 2 2 2 2 Thymidylate kinase KTI12 PF08433.5 gi|410671248|ref|YP_006923619.1| - 0.0015 17.8 1.4 0.0016 17.6 0.1 1.7 2 1 0 2 2 2 1 Chromatin associated protein KTI12 CoaE PF01121.15 gi|410671248|ref|YP_006923619.1| - 0.0034 16.7 1.8 0.069 12.5 0.0 2.5 1 1 0 2 2 2 1 Dephospho-CoA kinase AAA_5 PF07728.9 gi|410671248|ref|YP_006923619.1| - 0.0045 16.7 0.1 0.012 15.2 0.1 1.9 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|410671248|ref|YP_006923619.1| - 0.0066 16.6 0.2 0.013 15.7 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|410671248|ref|YP_006923619.1| - 0.011 14.8 0.1 0.026 13.6 0.0 1.9 2 1 0 2 2 2 0 Zeta toxin AAA_22 PF13401.1 gi|410671248|ref|YP_006923619.1| - 0.015 15.4 0.5 0.043 13.9 0.4 1.8 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|410671248|ref|YP_006923619.1| - 0.027 13.2 0.2 0.11 11.2 0.1 1.9 2 0 0 2 2 2 0 ArgK protein dNK PF01712.14 gi|410671248|ref|YP_006923619.1| - 0.032 14.1 0.6 0.052 13.4 0.3 1.4 1 1 0 1 1 1 0 Deoxynucleoside kinase ABC_tran PF00005.22 gi|410671248|ref|YP_006923619.1| - 0.036 14.3 0.2 0.056 13.7 0.1 1.5 1 1 0 1 1 1 0 ABC transporter AAA_19 PF13245.1 gi|410671248|ref|YP_006923619.1| - 0.038 13.7 0.1 0.097 12.4 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain MobB PF03205.9 gi|410671248|ref|YP_006923619.1| - 0.063 12.9 1.9 1.2 8.8 0.2 2.2 1 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|410671248|ref|YP_006923619.1| - 0.089 12.7 0.9 0.19 11.6 0.6 1.9 1 1 0 1 1 1 0 AAA ATPase domain PRK PF00485.13 gi|410671248|ref|YP_006923619.1| - 0.089 12.3 0.2 0.16 11.5 0.1 1.7 1 1 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family GATase PF00117.23 gi|410671249|ref|YP_006923620.1| - 3.6e-51 173.3 0.0 4e-51 173.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|410671249|ref|YP_006923620.1| - 9.8e-23 80.7 0.0 1.4e-22 80.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|410671250|ref|YP_006923621.1| - 4.5e-94 314.5 0.0 3.6e-92 308.3 0.0 2.3 2 0 0 2 2 2 2 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|410671250|ref|YP_006923621.1| - 3.5e-29 101.6 0.0 2.5e-28 98.8 0.0 2.2 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.17 gi|410671251|ref|YP_006923622.1| - 4.7e-33 114.4 0.0 5.8e-33 114.1 0.0 1.1 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase His_biosynth PF00977.16 gi|410671251|ref|YP_006923622.1| - 0.0011 18.2 0.2 0.0034 16.6 0.1 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein TMP-TENI PF02581.12 gi|410671251|ref|YP_006923622.1| - 0.026 13.6 0.0 0.15 11.1 0.0 2.0 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI FMN_dh PF01070.13 gi|410671251|ref|YP_006923622.1| - 0.12 11.1 0.0 1.7 7.4 0.0 2.1 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Glycos_transf_3 PF00591.16 gi|410671252|ref|YP_006923623.1| - 6e-100 333.8 1.3 9.5e-100 333.1 0.9 1.3 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|410671252|ref|YP_006923623.1| - 2.8e-19 68.4 2.7 7.5e-19 67.0 1.9 1.8 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain VWA_2 PF13519.1 gi|410671252|ref|YP_006923623.1| - 0.077 13.1 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 von Willebrand factor type A domain FeoC PF09012.5 gi|410671253|ref|YP_006923624.1| - 2.8e-08 33.3 0.3 3.5e-08 33.0 0.2 1.2 1 0 0 1 1 1 1 FeoC like transcriptional regulator DUF2250 PF10007.4 gi|410671253|ref|YP_006923624.1| - 0.0046 16.8 0.3 0.038 13.9 0.2 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.1 gi|410671253|ref|YP_006923624.1| - 0.019 14.7 0.5 5.1 6.9 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DUF4423 PF14394.1 gi|410671253|ref|YP_006923624.1| - 0.049 13.1 0.0 0.07 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) PadR PF03551.9 gi|410671253|ref|YP_006923624.1| - 0.14 11.9 0.0 0.38 10.5 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family P12 PF12669.2 gi|410671253|ref|YP_006923624.1| - 0.43 10.8 4.5 0.59 10.3 3.1 1.4 1 0 0 1 1 1 0 Virus attachment protein p12 family TctB PF07331.6 gi|410671254|ref|YP_006923625.1| - 0.24 11.0 8.9 0.79 9.3 3.9 2.5 2 1 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family Borrelia_P13 PF05628.7 gi|410671254|ref|YP_006923625.1| - 0.71 9.6 6.1 0.95 9.2 3.9 1.5 1 1 0 1 1 1 0 Borrelia membrane protein P13 DUF2407_C PF13373.1 gi|410671254|ref|YP_006923625.1| - 2.7 7.9 5.7 0.99 9.3 0.1 2.2 1 1 1 2 2 2 0 DUF2407 C-terminal domain DUF1700 PF08006.6 gi|410671254|ref|YP_006923625.1| - 5.8 6.1 7.7 8.4 5.6 5.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) FeoB_N PF02421.13 gi|410671255|ref|YP_006923626.1| - 5.3e-67 223.9 0.3 8.8e-67 223.2 0.2 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|410671255|ref|YP_006923626.1| - 1.2e-49 166.7 13.3 2e-30 104.8 2.0 2.5 2 0 0 2 2 2 2 Nucleoside recognition FeoB_C PF07664.7 gi|410671255|ref|YP_006923626.1| - 5.4e-22 76.9 0.3 5.4e-22 76.9 0.2 2.6 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.18 gi|410671255|ref|YP_006923626.1| - 7.7e-16 58.0 0.2 2.1e-15 56.6 0.1 1.8 2 1 0 2 2 2 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|410671255|ref|YP_006923626.1| - 2.3e-06 26.9 0.0 6.6e-06 25.4 0.0 1.7 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.22 gi|410671255|ref|YP_006923626.1| - 0.0002 20.8 0.6 0.0019 17.6 0.4 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|410671255|ref|YP_006923626.1| - 0.00021 20.4 0.3 0.0004 19.5 0.0 1.5 2 0 0 2 2 2 1 AIG1 family FeoA PF04023.9 gi|410671256|ref|YP_006923627.1| - 1.9e-15 56.5 0.1 2e-15 56.4 0.0 1.0 1 0 0 1 1 1 1 FeoA domain GATase_3 PF07685.9 gi|410671257|ref|YP_006923628.1| - 1.1e-42 145.3 0.2 1.9e-42 144.5 0.1 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|410671257|ref|YP_006923628.1| - 2.2e-26 92.4 0.0 4.6e-26 91.4 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|410671257|ref|YP_006923628.1| - 6.7e-18 65.0 0.0 1.7e-17 63.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain GATase PF00117.23 gi|410671257|ref|YP_006923628.1| - 4.3e-05 23.0 0.0 8.5e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|410671257|ref|YP_006923628.1| - 0.0025 17.4 0.0 0.0047 16.5 0.0 1.5 1 0 0 1 1 1 1 SNO glutamine amidotransferase family DJ-1_PfpI PF01965.19 gi|410671257|ref|YP_006923628.1| - 0.1 12.0 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family Methyltransf_31 PF13847.1 gi|410671258|ref|YP_006923629.1| - 1.2e-12 47.7 0.1 1.5e-12 47.3 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410671258|ref|YP_006923629.1| - 2.3e-12 47.4 0.0 2.9e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|410671258|ref|YP_006923629.1| - 5.3e-11 42.1 0.0 8.7e-11 41.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|410671258|ref|YP_006923629.1| - 6.8e-08 31.9 0.1 1.3e-07 31.0 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|410671258|ref|YP_006923629.1| - 8.5e-07 28.7 0.0 1.6e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.13 gi|410671258|ref|YP_006923629.1| - 1e-06 28.4 0.0 1.6e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.7 gi|410671258|ref|YP_006923629.1| - 1.1e-06 29.0 0.1 1.9e-06 28.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|410671258|ref|YP_006923629.1| - 8.5e-06 25.7 0.0 1e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|410671258|ref|YP_006923629.1| - 9.6e-06 25.9 0.0 1.3e-05 25.4 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|410671258|ref|YP_006923629.1| - 7.7e-05 21.8 0.0 0.00012 21.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.15 gi|410671258|ref|YP_006923629.1| - 8.6e-05 21.7 0.0 0.00012 21.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DOT1 PF08123.8 gi|410671258|ref|YP_006923629.1| - 0.00012 21.5 0.1 0.0002 20.7 0.0 1.4 2 0 0 2 2 2 1 Histone methylation protein DOT1 Ubie_methyltran PF01209.13 gi|410671258|ref|YP_006923629.1| - 0.00039 19.5 0.1 0.0005 19.2 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|410671258|ref|YP_006923629.1| - 0.00078 19.8 0.0 0.0015 18.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|410671258|ref|YP_006923629.1| - 0.0017 17.9 0.1 0.0035 16.8 0.0 1.5 1 1 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_23 PF13489.1 gi|410671258|ref|YP_006923629.1| - 0.002 17.8 0.0 0.0023 17.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|410671258|ref|YP_006923629.1| - 0.0022 17.4 0.1 0.004 16.5 0.0 1.4 1 1 0 1 1 1 1 Conserved hypothetical protein 95 N6_Mtase PF02384.11 gi|410671258|ref|YP_006923629.1| - 0.0047 16.0 0.1 0.017 14.2 0.0 1.7 2 0 0 2 2 2 1 N-6 DNA Methylase RrnaAD PF00398.15 gi|410671258|ref|YP_006923629.1| - 0.0067 15.4 0.0 0.013 14.5 0.0 1.3 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.5 gi|410671258|ref|YP_006923629.1| - 0.0093 15.5 0.1 0.016 14.7 0.0 1.3 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_24 PF13578.1 gi|410671258|ref|YP_006923629.1| - 0.025 15.4 0.0 0.036 14.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain FmrO PF07091.6 gi|410671258|ref|YP_006923629.1| - 0.029 13.3 0.0 0.035 13.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_32 PF13679.1 gi|410671258|ref|YP_006923629.1| - 0.036 13.7 0.0 0.055 13.1 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.11 gi|410671258|ref|YP_006923629.1| - 0.048 13.2 0.1 0.07 12.7 0.0 1.4 1 1 0 1 1 1 0 Met-10+ like-protein Methyltransf_8 PF05148.10 gi|410671258|ref|YP_006923629.1| - 0.065 12.8 0.1 0.13 11.8 0.1 1.8 1 1 0 1 1 1 0 Hypothetical methyltransferase TP_methylase PF00590.15 gi|410671259|ref|YP_006923630.1| - 1.5e-29 103.2 0.0 5.2e-29 101.4 0.0 1.7 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|410671260|ref|YP_006923631.1| - 7.4e-46 156.4 0.1 8.5e-46 156.3 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|410671260|ref|YP_006923631.1| - 0.027 14.6 0.1 0.068 13.3 0.0 1.9 1 1 0 1 1 1 0 Radical SAM superfamily DUF2741 PF10890.3 gi|410671260|ref|YP_006923631.1| - 0.077 13.1 0.1 0.47 10.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2741) CbiG_N PF11760.3 gi|410671261|ref|YP_006923632.1| - 6.3e-32 109.1 0.1 1e-31 108.4 0.0 1.3 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|410671262|ref|YP_006923633.1| - 1.6e-30 105.8 0.1 1.8e-30 105.6 0.1 1.0 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus TP_methylase PF00590.15 gi|410671263|ref|YP_006923634.1| - 1.9e-37 129.0 0.1 2.2e-37 128.7 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiC PF02570.10 gi|410671264|ref|YP_006923635.1| - 1.4e-63 213.9 2.5 1.7e-63 213.6 1.8 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase WIF PF02019.13 gi|410671265|ref|YP_006923636.1| - 0.098 12.0 0.0 0.32 10.4 0.0 1.8 2 0 0 2 2 2 0 WIF domain DsbD PF02683.10 gi|410671266|ref|YP_006923637.1| - 1.2e-40 139.3 19.7 1.5e-40 139.0 13.6 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|410671266|ref|YP_006923637.1| - 2.9e-13 50.0 18.4 3.8e-13 49.6 12.8 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF4112 PF13430.1 gi|410671266|ref|YP_006923637.1| - 0.2 11.6 1.6 0.56 10.1 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4112) UPF0016 PF01169.14 gi|410671266|ref|YP_006923637.1| - 1.5 9.0 10.6 0.084 13.0 1.7 2.5 2 1 0 2 2 2 0 Uncharacterized protein family UPF0016 Bacteriocin_IIc PF10439.4 gi|410671266|ref|YP_006923637.1| - 9.3 6.4 7.6 0.93 9.6 1.4 2.1 3 0 0 3 3 3 0 Bacteriocin class II with double-glycine leader peptide Thioredoxin PF00085.15 gi|410671267|ref|YP_006923638.1| - 3.8e-06 26.5 0.0 4.6e-06 26.2 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|410671267|ref|YP_006923638.1| - 0.0021 17.8 0.1 0.0036 17.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Redoxin PF08534.5 gi|410671267|ref|YP_006923638.1| - 0.0078 15.7 0.0 0.011 15.2 0.0 1.5 1 1 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|410671267|ref|YP_006923638.1| - 0.026 14.6 0.0 0.038 14.1 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin-like Thioredoxin_4 PF13462.1 gi|410671267|ref|YP_006923638.1| - 0.079 12.9 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin RibD_C PF01872.12 gi|410671268|ref|YP_006923639.1| - 1.9e-53 181.0 0.0 2.1e-53 180.8 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain CBS PF00571.23 gi|410671269|ref|YP_006923640.1| - 7.1e-44 147.3 13.7 1.5e-13 50.3 0.4 4.2 4 0 0 4 4 4 4 CBS domain Cache_3 PF14827.1 gi|410671269|ref|YP_006923640.1| - 0.0067 16.3 0.3 3 7.7 0.0 3.4 3 0 0 3 3 3 1 Sensory domain of two-component sensor kinase H_kinase_N PF12282.3 gi|410671269|ref|YP_006923640.1| - 0.0096 15.5 2.0 1.9 8.0 0.0 3.4 4 0 0 4 4 4 2 Signal transduction histidine kinase GAF_2 PF13185.1 gi|410671269|ref|YP_006923640.1| - 0.013 16.0 0.8 6.3 7.2 0.0 3.0 2 1 1 3 3 3 0 GAF domain Usp PF00582.21 gi|410671270|ref|YP_006923641.1| - 8.5e-36 123.2 0.0 9.5e-36 123.0 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|410671270|ref|YP_006923641.1| - 0.084 12.1 0.1 0.18 11.1 0.1 1.5 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Amidohydro_1 PF01979.15 gi|410671271|ref|YP_006923642.1| - 3.8e-15 56.3 0.1 9.8e-14 51.7 0.1 2.1 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.17 gi|410671271|ref|YP_006923642.1| - 1e-11 44.3 0.0 1.5e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_4 PF13147.1 gi|410671271|ref|YP_006923642.1| - 8.3e-08 32.5 0.1 7e-07 29.5 0.1 2.2 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|410671271|ref|YP_006923642.1| - 1.9e-05 24.3 0.1 3.9e-05 23.3 0.1 1.6 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|410671271|ref|YP_006923642.1| - 0.00022 20.5 0.0 0.0019 17.4 0.0 2.1 2 0 0 2 2 2 1 Amidohydrolase family DUF167 PF02594.11 gi|410671272|ref|YP_006923643.1| - 2.8e-18 65.6 0.0 3.4e-18 65.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Toprim PF01751.17 gi|410671273|ref|YP_006923644.1| - 1.2e-05 25.2 0.4 0.00016 21.5 0.0 2.5 2 1 0 2 2 2 1 Toprim domain Toprim_4 PF13662.1 gi|410671273|ref|YP_006923644.1| - 0.0001 22.2 0.0 0.00034 20.5 0.0 1.9 2 1 0 2 2 2 1 Toprim domain MAT1 PF06391.8 gi|410671273|ref|YP_006923644.1| - 0.035 13.6 0.3 0.31 10.5 0.1 2.0 2 0 0 2 2 2 0 CDK-activating kinase assembly factor MAT1 Terpene_synth PF01397.16 gi|410671273|ref|YP_006923644.1| - 0.11 11.8 0.3 0.17 11.2 0.2 1.4 1 0 0 1 1 1 0 Terpene synthase, N-terminal domain Toprim_2 PF13155.1 gi|410671273|ref|YP_006923644.1| - 0.12 12.7 0.0 0.25 11.6 0.0 1.7 2 0 0 2 2 2 0 Toprim-like DUF356 PF04009.7 gi|410671274|ref|YP_006923645.1| - 1.6e-42 143.8 0.1 1.8e-42 143.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF356) Sulfakinin PF08257.6 gi|410671274|ref|YP_006923645.1| - 0.023 14.4 1.5 0.044 13.5 1.0 1.5 1 0 0 1 1 1 0 Sulfakinin family P5CR_dimer PF14748.1 gi|410671275|ref|YP_006923646.1| - 1.3e-41 140.9 0.2 1.3e-41 140.9 0.2 1.7 2 0 0 2 2 2 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|410671275|ref|YP_006923646.1| - 2.2e-21 76.0 0.5 2.2e-21 76.0 0.3 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|410671275|ref|YP_006923646.1| - 3.5e-08 33.4 1.0 1.7e-07 31.2 0.7 2.0 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|410671275|ref|YP_006923646.1| - 6.8e-08 32.3 1.4 6.8e-08 32.3 1.0 2.4 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|410671275|ref|YP_006923646.1| - 0.0018 17.7 0.2 0.0018 17.7 0.2 1.5 2 0 0 2 2 1 1 Ketopantoate reductase PanE/ApbA PDH PF02153.12 gi|410671275|ref|YP_006923646.1| - 0.0023 16.8 2.2 0.0035 16.2 1.5 1.4 1 1 0 1 1 1 1 Prephenate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|410671275|ref|YP_006923646.1| - 0.0093 15.1 0.1 0.018 14.1 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|410671275|ref|YP_006923646.1| - 0.011 16.0 0.2 0.021 15.1 0.1 1.5 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain IlvN PF07991.7 gi|410671275|ref|YP_006923646.1| - 0.014 14.7 0.4 0.022 14.1 0.3 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain DapB_N PF01113.15 gi|410671275|ref|YP_006923646.1| - 0.026 14.4 0.7 0.064 13.1 0.1 1.9 1 1 1 2 2 2 0 Dihydrodipicolinate reductase, N-terminus TruB_C PF09142.6 gi|410671275|ref|YP_006923646.1| - 0.072 12.7 0.4 0.18 11.4 0.2 1.6 1 0 0 1 1 1 0 tRNA Pseudouridine synthase II, C terminal HTH_3 PF01381.17 gi|410671276|ref|YP_006923647.1| - 6.8e-06 25.8 3.2 1.1e-05 25.1 2.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|410671276|ref|YP_006923647.1| - 2e-05 24.6 0.5 3.8e-05 23.7 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|410671276|ref|YP_006923647.1| - 0.00015 21.2 1.3 0.00048 19.6 1.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|410671276|ref|YP_006923647.1| - 0.00022 21.2 2.0 0.0004 20.3 1.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF1272 PF06906.6 gi|410671276|ref|YP_006923647.1| - 0.01 15.6 0.1 0.016 15.0 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) HTH_37 PF13744.1 gi|410671276|ref|YP_006923647.1| - 0.083 12.7 0.3 0.14 11.9 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3775 PF12616.3 gi|410671276|ref|YP_006923647.1| - 0.084 12.6 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3775) AAA PF00004.24 gi|410671277|ref|YP_006923648.1| - 9.1e-44 148.8 0.2 4.3e-43 146.6 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|410671277|ref|YP_006923648.1| - 2.9e-09 36.7 0.5 1.2e-08 34.7 0.1 2.2 2 2 1 3 3 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|410671277|ref|YP_006923648.1| - 4.4e-07 30.0 0.5 2.4e-06 27.6 0.1 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_2 PF07724.9 gi|410671277|ref|YP_006923648.1| - 1.2e-06 28.5 0.0 3.8e-06 26.9 0.0 1.8 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) DUF815 PF05673.8 gi|410671277|ref|YP_006923648.1| - 4.1e-06 25.9 0.0 1e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.1 gi|410671277|ref|YP_006923648.1| - 2e-05 24.7 0.4 0.0039 17.3 0.0 2.6 1 1 1 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|410671277|ref|YP_006923648.1| - 0.00019 20.5 0.0 0.00045 19.3 0.0 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|410671277|ref|YP_006923648.1| - 0.0009 20.0 0.3 0.0052 17.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|410671277|ref|YP_006923648.1| - 0.0011 18.6 0.2 0.0028 17.3 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain Filament PF00038.16 gi|410671277|ref|YP_006923648.1| - 0.0025 17.3 1.5 0.0048 16.4 1.1 1.4 1 0 0 1 1 1 1 Intermediate filament protein RNA_helicase PF00910.17 gi|410671277|ref|YP_006923648.1| - 0.0026 17.8 0.0 0.0077 16.3 0.0 1.8 2 0 0 2 2 1 1 RNA helicase AAA_25 PF13481.1 gi|410671277|ref|YP_006923648.1| - 0.003 16.9 3.2 0.11 11.8 0.1 2.9 2 1 1 3 3 3 1 AAA domain AAA_28 PF13521.1 gi|410671277|ref|YP_006923648.1| - 0.0031 17.4 0.0 0.0062 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|410671277|ref|YP_006923648.1| - 0.0034 17.6 0.3 0.017 15.4 0.0 2.3 2 1 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|410671277|ref|YP_006923648.1| - 0.0045 16.4 0.1 0.09 12.2 0.0 2.6 2 1 0 2 2 2 1 Sigma-54 interaction domain TIP49 PF06068.8 gi|410671277|ref|YP_006923648.1| - 0.005 15.6 0.0 0.0094 14.7 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus IstB_IS21 PF01695.12 gi|410671277|ref|YP_006923648.1| - 0.007 15.7 0.3 0.016 14.6 0.0 1.7 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_3 PF07726.6 gi|410671277|ref|YP_006923648.1| - 0.011 15.3 0.0 0.025 14.2 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|410671277|ref|YP_006923648.1| - 0.014 14.9 0.5 0.029 13.9 0.0 1.7 2 0 0 2 2 1 0 AAA domain Zeta_toxin PF06414.7 gi|410671277|ref|YP_006923648.1| - 0.016 14.2 0.0 0.035 13.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin MCM PF00493.18 gi|410671277|ref|YP_006923648.1| - 0.021 13.6 0.1 0.74 8.5 0.0 2.3 2 0 0 2 2 2 0 MCM2/3/5 family Sigma54_activ_2 PF14532.1 gi|410671277|ref|YP_006923648.1| - 0.023 14.7 0.0 0.16 12.0 0.0 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain NB-ARC PF00931.17 gi|410671277|ref|YP_006923648.1| - 0.033 13.0 0.0 0.096 11.5 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain Cortex-I_coil PF09304.5 gi|410671277|ref|YP_006923648.1| - 0.034 14.1 2.7 0.11 12.5 1.8 1.8 1 0 0 1 1 1 0 Cortexillin I, coiled coil KaiC PF06745.8 gi|410671277|ref|YP_006923648.1| - 0.037 13.1 4.7 0.095 11.8 0.0 3.0 2 1 1 3 3 3 0 KaiC Mg_chelatase PF01078.16 gi|410671277|ref|YP_006923648.1| - 0.038 13.1 0.0 0.1 11.7 0.0 1.7 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.10 gi|410671277|ref|YP_006923648.1| - 0.046 13.4 0.8 3.4 7.3 0.0 2.9 2 1 1 3 3 3 0 NTPase NACHT PF05729.7 gi|410671277|ref|YP_006923648.1| - 0.059 13.0 0.2 0.39 10.3 0.0 2.2 1 1 0 2 2 2 0 NACHT domain DUF2075 PF09848.4 gi|410671277|ref|YP_006923648.1| - 0.069 12.1 0.0 0.12 11.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.1 gi|410671277|ref|YP_006923648.1| - 0.1 12.4 0.0 0.23 11.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|410671277|ref|YP_006923648.1| - 0.1 12.2 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|410671277|ref|YP_006923648.1| - 0.12 11.9 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain ADIP PF11559.3 gi|410671277|ref|YP_006923648.1| - 0.35 10.7 4.4 0.69 9.8 3.1 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding bZIP_2 PF07716.10 gi|410671277|ref|YP_006923648.1| - 2.8 7.8 9.1 1.3 8.8 0.5 2.9 3 0 0 3 3 3 0 Basic region leucine zipper AAA_23 PF13476.1 gi|410671277|ref|YP_006923648.1| - 8 6.7 7.0 28 4.9 0.1 2.8 2 1 0 2 2 2 0 AAA domain DUF99 PF01949.11 gi|410671278|ref|YP_006923649.1| - 3.5e-63 212.1 0.1 3.9e-63 211.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 PGM_PMM_I PF02878.11 gi|410671279|ref|YP_006923650.1| - 6.7e-42 142.2 0.3 1.3e-41 141.3 0.2 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|410671279|ref|YP_006923650.1| - 6.2e-26 90.7 0.0 1.2e-25 89.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|410671279|ref|YP_006923650.1| - 6.5e-25 87.3 0.0 1.3e-24 86.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|410671279|ref|YP_006923650.1| - 1.8e-11 43.8 0.0 5.1e-11 42.4 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_18 PF12847.2 gi|410671279|ref|YP_006923650.1| - 0.052 14.1 0.0 0.12 12.9 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain QueC PF06508.8 gi|410671280|ref|YP_006923651.1| - 7.4e-10 38.4 0.0 2.1e-09 36.9 0.0 1.7 1 1 1 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|410671280|ref|YP_006923651.1| - 7.6e-10 38.7 0.1 1.2e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|410671280|ref|YP_006923651.1| - 1e-08 34.4 0.0 2.1e-08 33.3 0.0 1.4 2 0 0 2 2 2 1 NAD synthase tRNA_Me_trans PF03054.11 gi|410671280|ref|YP_006923651.1| - 2.4e-08 32.9 0.0 2.2e-05 23.2 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|410671280|ref|YP_006923651.1| - 0.00022 20.7 0.0 0.00038 19.9 0.0 1.4 1 0 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.14 gi|410671280|ref|YP_006923651.1| - 0.00025 20.2 0.0 0.00039 19.5 0.0 1.3 1 0 0 1 1 1 1 Arginosuccinate synthase ThiI PF02568.9 gi|410671280|ref|YP_006923651.1| - 0.034 13.5 0.0 0.068 12.6 0.0 1.5 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Acetyltransf_7 PF13508.1 gi|410671281|ref|YP_006923652.1| - 1.2e-12 47.7 0.0 1.6e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|410671281|ref|YP_006923652.1| - 4e-11 42.7 0.0 5.5e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|410671281|ref|YP_006923652.1| - 5.4e-06 26.2 0.0 3.3e-05 23.7 0.0 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|410671281|ref|YP_006923652.1| - 2.6e-05 24.2 0.0 3.3e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|410671281|ref|YP_006923652.1| - 4.3e-05 23.2 0.0 5.9e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|410671281|ref|YP_006923652.1| - 0.055 13.3 0.0 0.088 12.7 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase GNAT_acetyltr_2 PF13718.1 gi|410671281|ref|YP_006923652.1| - 0.096 12.0 0.0 0.096 12.0 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Acetyltransf_3 PF13302.1 gi|410671281|ref|YP_006923652.1| - 0.13 12.4 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF531 PF04407.7 gi|410671282|ref|YP_006923653.1| - 1.2e-83 279.2 0.0 1.4e-83 279.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) SPOUT_MTase_2 PF14419.1 gi|410671282|ref|YP_006923653.1| - 0.0058 15.8 0.0 0.0074 15.4 0.0 1.2 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP Methyltrn_RNA_4 PF09936.4 gi|410671282|ref|YP_006923653.1| - 0.034 13.6 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 SAM-dependent RNA methyltransferase dTMP_synthase PF02593.9 gi|410671283|ref|YP_006923654.1| - 1.5e-72 243.4 0.1 1.8e-72 243.2 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase Fasciclin PF02469.17 gi|410671284|ref|YP_006923655.1| - 4e-39 133.5 1.3 7.1e-39 132.7 0.1 2.1 2 0 0 2 2 2 1 Fasciclin domain Consortin_C PF15281.1 gi|410671284|ref|YP_006923655.1| - 0.066 12.7 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 Consortin C-terminus DNA_pol3_a_NI PF14480.1 gi|410671284|ref|YP_006923655.1| - 2.2 7.9 4.4 4.7 6.9 0.0 3.1 4 0 0 4 4 4 0 DNA polymerase III polC-type N-terminus I BOFC_N PF08977.5 gi|410671285|ref|YP_006923656.1| - 0.051 13.4 0.0 0.16 11.8 0.0 1.8 1 0 0 1 1 1 0 Bypass of Forespore C, N terminal DUF362 PF04015.7 gi|410671287|ref|YP_006923658.1| - 2.1e-64 216.7 0.1 2.9e-64 216.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|410671287|ref|YP_006923658.1| - 1.1e-11 43.7 21.4 8.4e-07 28.3 5.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|410671287|ref|YP_006923658.1| - 1.6e-08 33.9 20.6 0.0005 19.8 3.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|410671287|ref|YP_006923658.1| - 1.8e-07 30.8 17.9 3.7e-07 29.8 12.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410671287|ref|YP_006923658.1| - 2e-07 31.2 14.7 4.4e-07 30.1 10.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410671287|ref|YP_006923658.1| - 8.8e-07 29.1 15.0 1.7e-06 28.1 10.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410671287|ref|YP_006923658.1| - 1.4e-05 24.7 17.7 0.00011 21.9 3.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|410671287|ref|YP_006923658.1| - 3.6e-05 23.6 16.0 0.0002 21.2 11.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|410671287|ref|YP_006923658.1| - 4.1e-05 24.0 11.8 0.023 15.2 1.3 2.5 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|410671287|ref|YP_006923658.1| - 0.00011 22.0 16.3 0.00022 21.0 11.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|410671287|ref|YP_006923658.1| - 0.00012 22.3 10.3 0.068 13.5 1.5 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|410671287|ref|YP_006923658.1| - 0.00022 21.8 11.9 0.0033 18.1 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|410671287|ref|YP_006923658.1| - 0.0003 21.0 12.1 0.025 14.9 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410671287|ref|YP_006923658.1| - 0.037 14.3 17.9 0.072 13.4 2.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|410671287|ref|YP_006923658.1| - 0.27 11.9 23.9 1.1 9.9 5.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain tRNA-synt_2d PF01409.15 gi|410671288|ref|YP_006923659.1| - 4.1e-92 307.8 0.0 5.8e-92 307.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|410671288|ref|YP_006923659.1| - 0.0019 17.0 0.3 0.14 10.8 0.0 3.1 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.20 gi|410671288|ref|YP_006923659.1| - 0.0019 17.8 0.0 0.0078 15.8 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HTH_45 PF14947.1 gi|410671288|ref|YP_006923659.1| - 0.0093 15.7 0.8 0.31 10.8 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix NQRA PF05896.6 gi|410671288|ref|YP_006923659.1| - 0.037 13.2 0.0 0.058 12.5 0.0 1.2 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HTH_27 PF13463.1 gi|410671288|ref|YP_006923659.1| - 0.043 14.1 1.8 0.86 9.9 0.2 2.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|410671288|ref|YP_006923659.1| - 0.29 10.8 1.4 0.47 10.2 0.1 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB tRNA-synt_1b PF00579.20 gi|410671289|ref|YP_006923660.1| - 1.6e-38 132.5 0.0 4.5e-23 81.8 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) Radical_SAM PF04055.16 gi|410671290|ref|YP_006923661.1| - 2.5e-14 53.8 0.1 4.8e-14 52.8 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|410671290|ref|YP_006923661.1| - 2.1e-06 27.9 0.1 4.8e-06 26.8 0.1 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|410671290|ref|YP_006923661.1| - 0.00024 21.1 0.0 0.00055 19.9 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|410671290|ref|YP_006923661.1| - 0.0075 16.3 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Neur PF00064.13 gi|410671290|ref|YP_006923661.1| - 0.068 11.2 0.0 0.1 10.6 0.0 1.1 1 0 0 1 1 1 0 Neuraminidase KaiC PF06745.8 gi|410671291|ref|YP_006923662.1| - 5.7e-62 208.7 0.2 6.7e-62 208.5 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|410671291|ref|YP_006923662.1| - 3.2e-09 36.4 0.0 4.7e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|410671291|ref|YP_006923662.1| - 0.00064 18.1 0.7 0.0044 15.3 0.5 2.1 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.10 gi|410671291|ref|YP_006923662.1| - 0.0048 15.8 0.0 0.02 13.7 0.0 1.8 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_22 PF13401.1 gi|410671291|ref|YP_006923662.1| - 0.0053 16.8 0.1 0.021 14.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|410671291|ref|YP_006923662.1| - 0.012 15.5 0.3 0.034 14.0 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|410671291|ref|YP_006923662.1| - 0.021 14.8 0.1 0.042 13.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|410671291|ref|YP_006923662.1| - 0.026 13.9 0.0 0.043 13.2 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_19 PF13245.1 gi|410671291|ref|YP_006923662.1| - 0.033 13.9 0.0 0.1 12.3 0.0 1.8 2 0 0 2 2 2 0 Part of AAA domain AAA_29 PF13555.1 gi|410671291|ref|YP_006923662.1| - 0.043 13.3 0.0 0.097 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|410671291|ref|YP_006923662.1| - 0.071 13.9 1.0 0.15 12.8 0.6 1.8 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|410671291|ref|YP_006923662.1| - 0.076 12.9 0.0 0.24 11.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|410671291|ref|YP_006923662.1| - 0.082 12.3 0.6 0.51 9.7 0.4 2.0 1 1 0 1 1 1 0 AAA-like domain Zeta_toxin PF06414.7 gi|410671291|ref|YP_006923662.1| - 0.11 11.6 0.1 1.1 8.3 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin eIF-5_eIF-2B PF01873.12 gi|410671292|ref|YP_006923663.1| - 3.9e-40 136.3 0.0 5.5e-40 135.9 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|410671292|ref|YP_006923663.1| - 1.8e-11 43.6 0.9 3.8e-11 42.6 0.6 1.5 1 0 0 1 1 1 1 TRAM domain NMD3 PF04981.8 gi|410671292|ref|YP_006923663.1| - 0.0076 15.3 0.1 0.01 14.9 0.1 1.3 1 0 0 1 1 1 1 NMD3 family ZF-HD_dimer PF04770.7 gi|410671292|ref|YP_006923663.1| - 0.032 14.2 0.4 0.055 13.5 0.2 1.4 1 0 0 1 1 1 0 ZF-HD protein dimerisation region Stc1 PF12898.2 gi|410671292|ref|YP_006923663.1| - 0.038 14.0 0.6 0.065 13.3 0.4 1.3 1 0 0 1 1 1 0 Stc1 domain Zn-ribbon_8 PF09723.5 gi|410671292|ref|YP_006923663.1| - 0.058 13.3 2.1 0.1 12.5 1.4 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zf-RanBP PF00641.13 gi|410671292|ref|YP_006923663.1| - 0.35 9.9 0.1 0.35 9.9 0.1 1.7 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Ribosomal_L16 PF00252.13 gi|410671293|ref|YP_006923664.1| - 2.1e-32 111.6 0.4 2.4e-32 111.4 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF1786 PF08735.5 gi|410671294|ref|YP_006923665.1| - 9.6e-90 300.1 0.1 1.2e-89 299.8 0.1 1.1 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) DDR PF08841.5 gi|410671294|ref|YP_006923665.1| - 0.0014 17.4 0.3 0.026 13.3 0.0 2.2 2 0 0 2 2 2 1 Diol dehydratase reactivase ATPase-like domain MreB_Mbl PF06723.8 gi|410671294|ref|YP_006923665.1| - 0.059 11.9 0.1 0.37 9.3 0.0 2.1 2 0 0 2 2 2 0 MreB/Mbl protein FtsA PF14450.1 gi|410671294|ref|YP_006923665.1| - 0.095 12.5 0.4 6.2 6.6 0.1 2.4 2 0 0 2 2 2 0 Cell division protein FtsA MoCF_biosynth PF00994.19 gi|410671295|ref|YP_006923666.1| - 5.2e-30 103.7 0.1 6e-30 103.5 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain KaiC PF06745.8 gi|410671296|ref|YP_006923667.1| - 0.0059 15.7 0.1 0.0094 15.0 0.1 1.4 1 1 0 1 1 1 1 KaiC PAXNEB PF05625.6 gi|410671296|ref|YP_006923667.1| - 0.0068 15.2 0.0 0.012 14.4 0.0 1.4 2 0 0 2 2 2 1 PAXNEB protein CRS1_YhbY PF01985.16 gi|410671297|ref|YP_006923668.1| - 3e-23 81.6 1.4 3.2e-23 81.5 1.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain DUF190 PF02641.10 gi|410671298|ref|YP_006923669.1| - 1.2e-26 92.5 0.5 1.3e-26 92.3 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 PepSY PF03413.14 gi|410671299|ref|YP_006923670.1| - 0.042 14.4 0.0 0.062 13.9 0.0 1.4 1 1 0 1 1 1 0 Peptidase propeptide and YPEB domain VirB8 PF04335.8 gi|410671299|ref|YP_006923670.1| - 0.21 11.1 1.1 5.6 6.4 0.0 2.4 2 1 0 2 2 2 0 VirB8 protein DsbD PF02683.10 gi|410671300|ref|YP_006923671.1| - 4.1e-18 65.7 16.8 4.1e-18 65.7 11.6 1.5 2 0 0 2 2 2 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.1 gi|410671300|ref|YP_006923671.1| - 1.5e-06 27.8 0.1 3.3e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin domain DUF2910 PF11139.3 gi|410671300|ref|YP_006923671.1| - 3.2e-06 26.4 14.6 5.5e-05 22.4 9.5 2.7 1 1 0 1 1 1 1 Protein of unknown function (DUF2910) Thioredoxin PF00085.15 gi|410671300|ref|YP_006923671.1| - 8.1e-06 25.4 0.0 1.6e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.19 gi|410671300|ref|YP_006923671.1| - 0.028 14.3 0.1 0.07 13.1 0.1 1.7 1 0 0 1 1 1 0 Glutaredoxin DUF4234 PF14018.1 gi|410671300|ref|YP_006923671.1| - 0.046 13.4 0.8 0.49 10.1 0.3 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4234) Thioredoxin_2 PF13098.1 gi|410671300|ref|YP_006923671.1| - 0.2 11.8 0.2 2.1 8.5 0.1 2.2 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_4 PF13462.1 gi|410671300|ref|YP_006923671.1| - 0.21 11.6 0.4 3.7 7.5 0.1 2.1 1 1 1 2 2 2 0 Thioredoxin CRCB PF02537.10 gi|410671301|ref|YP_006923672.1| - 1.8e-43 147.1 32.1 1.1e-22 80.0 8.6 2.2 2 0 0 2 2 2 2 CrcB-like protein Lysis_S PF04971.7 gi|410671301|ref|YP_006923672.1| - 6.6 6.5 9.5 4.4 7.0 0.4 3.6 3 1 1 4 4 4 0 Lysis protein S MoeA_N PF03453.12 gi|410671302|ref|YP_006923673.1| - 1.2e-39 135.2 0.1 2e-39 134.5 0.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|410671302|ref|YP_006923673.1| - 4.4e-24 84.5 0.0 1.2e-23 83.1 0.0 1.8 2 0 0 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|410671302|ref|YP_006923673.1| - 1.9e-16 59.7 0.1 3.9e-16 58.7 0.0 1.6 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) ThiS PF02597.15 gi|410671303|ref|YP_006923674.1| - 1.5e-19 70.1 0.0 1.7e-19 69.9 0.0 1.0 1 0 0 1 1 1 1 ThiS family ABC2_membrane PF01061.19 gi|410671304|ref|YP_006923675.1| - 2.2e-36 124.9 24.3 2.2e-36 124.9 16.9 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|410671304|ref|YP_006923675.1| - 3.6e-15 55.8 28.5 3.6e-15 55.8 19.8 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|410671304|ref|YP_006923675.1| - 1e-06 28.1 25.8 1.7e-06 27.4 17.6 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.8 gi|410671304|ref|YP_006923675.1| - 0.0014 17.8 9.1 0.0014 17.8 6.3 1.9 1 1 1 2 2 2 1 CcmB protein Flavoprotein PF02441.14 gi|410671305|ref|YP_006923676.1| - 1.1e-28 99.5 0.0 1.4e-28 99.1 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein HD PF01966.17 gi|410671307|ref|YP_006923678.1| - 6.5e-14 51.9 1.4 6.5e-14 51.9 1.0 2.3 2 1 0 2 2 2 1 HD domain HDOD PF08668.7 gi|410671307|ref|YP_006923678.1| - 0.011 14.9 0.0 0.043 13.1 0.0 1.9 2 0 0 2 2 2 0 HDOD domain DUF2482 PF10655.4 gi|410671307|ref|YP_006923678.1| - 0.063 13.3 0.0 0.17 11.9 0.0 1.8 1 0 0 1 1 1 0 Hypothetical protein of unknown function (DUF2482) UPF0052 PF01933.13 gi|410671308|ref|YP_006923679.1| - 2.4e-53 181.4 0.3 1e-52 179.3 0.2 1.7 1 1 0 1 1 1 1 Uncharacterised protein family UPF0052 DUF4226 PF10774.4 gi|410671308|ref|YP_006923679.1| - 0.005 16.8 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4226) Frag1 PF10277.4 gi|410671309|ref|YP_006923680.1| - 0.01 15.3 3.1 0.019 14.4 2.2 1.4 1 1 0 1 1 1 0 Frag1/DRAM/Sfk1 family Propeptide_C1 PF08127.8 gi|410671309|ref|YP_006923680.1| - 0.042 13.4 0.0 0.065 12.8 0.0 1.3 1 0 0 1 1 1 0 Peptidase family C1 propeptide Abhydrolase_9_N PF15420.1 gi|410671309|ref|YP_006923680.1| - 0.046 13.4 2.9 0.056 13.1 2.0 1.1 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus Claudin_3 PF06653.6 gi|410671309|ref|YP_006923680.1| - 0.047 13.4 8.4 0.064 12.9 5.9 1.1 1 0 0 1 1 1 0 Tight junction protein, Claudin-like DUF962 PF06127.6 gi|410671309|ref|YP_006923680.1| - 0.48 10.3 4.5 0.54 10.1 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF962) Tetraspannin PF00335.15 gi|410671309|ref|YP_006923680.1| - 0.64 9.2 12.7 1 8.5 8.8 1.4 1 1 0 1 1 1 0 Tetraspanin family DctQ PF04290.7 gi|410671309|ref|YP_006923680.1| - 0.7 9.6 8.1 0.48 10.1 4.4 1.5 1 1 1 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component EI24 PF07264.6 gi|410671309|ref|YP_006923680.1| - 4 6.7 12.4 0.68 9.3 5.6 1.7 1 1 1 2 2 2 0 Etoposide-induced protein 2.4 (EI24) Pribosyltran PF00156.22 gi|410671310|ref|YP_006923681.1| - 1e-21 76.9 0.6 1.3e-21 76.5 0.4 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|410671310|ref|YP_006923681.1| - 3.4e-05 23.1 0.1 3.9e-05 22.9 0.1 1.4 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|410671310|ref|YP_006923681.1| - 0.0016 17.8 0.0 0.0023 17.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase DUF1529 PF07485.6 gi|410671310|ref|YP_006923681.1| - 0.02 14.6 0.1 0.56 9.9 0.0 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1259) Muted PF14942.1 gi|410671310|ref|YP_006923681.1| - 0.1 12.4 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein Diphthamide_syn PF01866.12 gi|410671311|ref|YP_006923682.1| - 3.4e-98 328.6 0.0 3.9e-98 328.4 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein PrmA PF06325.8 gi|410671312|ref|YP_006923683.1| - 3.4e-16 59.2 0.1 4.4e-16 58.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|410671312|ref|YP_006923683.1| - 8.7e-16 57.7 0.0 1.3e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|410671312|ref|YP_006923683.1| - 1.2e-15 57.5 0.0 1.6e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|410671312|ref|YP_006923683.1| - 2.6e-12 46.5 0.0 3.8e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410671312|ref|YP_006923683.1| - 2.5e-10 40.9 0.0 4.1e-10 40.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|410671312|ref|YP_006923683.1| - 8.1e-10 38.5 0.0 1.2e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|410671312|ref|YP_006923683.1| - 5.5e-08 33.0 0.1 1e-07 32.2 0.1 1.6 2 1 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|410671312|ref|YP_006923683.1| - 2.2e-07 31.2 0.0 5.4e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|410671312|ref|YP_006923683.1| - 1.3e-05 24.2 0.0 1.9e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_15 PF09445.5 gi|410671312|ref|YP_006923683.1| - 4.1e-05 23.1 0.0 5.4e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.1 gi|410671312|ref|YP_006923683.1| - 8.6e-05 22.3 0.0 0.0001 22.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|410671312|ref|YP_006923683.1| - 0.00011 21.7 0.0 0.00015 21.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_32 PF13679.1 gi|410671312|ref|YP_006923683.1| - 0.0002 21.0 0.0 0.00027 20.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|410671312|ref|YP_006923683.1| - 0.0011 18.5 0.0 0.0015 18.1 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|410671312|ref|YP_006923683.1| - 0.0019 17.3 0.0 0.003 16.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|410671312|ref|YP_006923683.1| - 0.0082 16.5 0.0 0.019 15.4 0.0 1.7 2 1 0 2 2 1 1 Methyltransferase domain DUF43 PF01861.11 gi|410671312|ref|YP_006923683.1| - 0.025 13.5 0.0 0.041 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF43 CMAS PF02353.15 gi|410671312|ref|YP_006923683.1| - 0.045 12.8 0.0 0.063 12.3 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase N6_Mtase PF02384.11 gi|410671312|ref|YP_006923683.1| - 0.052 12.6 0.0 0.069 12.2 0.0 1.3 1 0 0 1 1 1 0 N-6 DNA Methylase DNA_methylase PF00145.12 gi|410671312|ref|YP_006923683.1| - 0.052 12.6 0.0 0.084 11.9 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase ECR1_N PF14382.1 gi|410671313|ref|YP_006923684.1| - 1e-11 43.9 0.7 1.9e-11 43.0 0.5 1.5 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region zf-NADH-PPase PF09297.6 gi|410671313|ref|YP_006923684.1| - 0.0026 17.2 0.2 0.0052 16.2 0.1 1.5 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain HypA PF01155.14 gi|410671313|ref|YP_006923684.1| - 0.0035 17.0 0.1 0.0063 16.1 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|410671313|ref|YP_006923684.1| - 0.0089 15.8 0.7 0.015 15.1 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|410671313|ref|YP_006923684.1| - 0.012 15.3 1.2 0.021 14.4 0.9 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain S1 PF00575.18 gi|410671313|ref|YP_006923684.1| - 0.016 15.2 2.1 3.3 7.8 0.6 2.5 2 0 0 2 2 2 0 S1 RNA binding domain EXOSC1 PF10447.4 gi|410671313|ref|YP_006923684.1| - 0.024 14.5 1.1 0.087 12.7 0.8 1.9 1 1 0 1 1 1 0 Exosome component EXOSC1/CSL4 zf-ribbon_3 PF13248.1 gi|410671313|ref|YP_006923684.1| - 0.033 13.3 0.6 0.078 12.2 0.4 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Spt4 PF06093.8 gi|410671313|ref|YP_006923684.1| - 0.072 12.9 0.8 0.14 12.0 0.4 1.6 2 0 0 2 2 2 0 Spt4/RpoE2 zinc finger RNA_POL_M_15KD PF02150.11 gi|410671313|ref|YP_006923684.1| - 0.1 12.2 1.7 0.18 11.4 1.2 1.3 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zinc_ribbon_5 PF13719.1 gi|410671313|ref|YP_006923684.1| - 0.11 12.1 3.2 2.8 7.5 2.2 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|410671313|ref|YP_006923684.1| - 0.11 12.2 3.3 3.2 7.5 2.3 2.3 1 1 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|410671313|ref|YP_006923684.1| - 0.14 11.9 1.2 0.23 11.2 0.8 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.1 gi|410671313|ref|YP_006923684.1| - 0.17 11.6 0.8 0.34 10.6 0.6 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 YwqJ-deaminase PF14431.1 gi|410671313|ref|YP_006923684.1| - 0.27 11.0 1.8 0.41 10.4 0.1 1.9 1 1 1 2 2 2 0 YwqJ-like deaminase Nudix_N_2 PF14803.1 gi|410671313|ref|YP_006923684.1| - 0.32 10.7 2.4 10 5.9 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal RNA_pol_L_2 PF13656.1 gi|410671314|ref|YP_006923685.1| - 1e-22 79.3 0.2 1.2e-22 79.0 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|410671314|ref|YP_006923685.1| - 3.7e-10 38.7 0.0 5e-10 38.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF2036 PF09724.4 gi|410671314|ref|YP_006923685.1| - 0.01 14.9 0.1 0.01 14.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2036) SLA_LP_auto_ag PF05889.8 gi|410671315|ref|YP_006923686.1| - 1.8e-48 165.0 0.0 3.6e-48 163.9 0.0 1.5 1 1 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|410671315|ref|YP_006923686.1| - 4.8e-19 68.3 0.0 6.8e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|410671315|ref|YP_006923686.1| - 9.7e-09 34.6 0.0 1.3e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Pyridoxal_deC PF00282.14 gi|410671315|ref|YP_006923686.1| - 0.0001 20.9 0.0 0.00015 20.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain OKR_DC_1 PF01276.15 gi|410671315|ref|YP_006923686.1| - 0.0018 16.9 0.0 0.0062 15.1 0.0 1.7 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Beta_elim_lyase PF01212.16 gi|410671315|ref|YP_006923686.1| - 0.0028 16.8 0.0 0.0037 16.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|410671315|ref|YP_006923686.1| - 0.023 13.7 0.1 0.11 11.5 0.0 1.9 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family MS_channel PF00924.13 gi|410671316|ref|YP_006923687.1| - 9.7e-24 83.8 0.0 2.4e-23 82.5 0.0 1.5 1 1 0 1 1 1 1 Mechanosensitive ion channel PagP PF07017.6 gi|410671316|ref|YP_006923687.1| - 0.024 13.9 0.1 0.052 12.8 0.0 1.6 1 0 0 1 1 1 0 Antimicrobial peptide resistance and lipid A acylation protein PagP Myco_arth_vir_N PF09610.5 gi|410671317|ref|YP_006923688.1| - 0.14 12.1 2.6 0.34 10.8 1.8 1.7 1 0 0 1 1 1 0 Mycoplasma virulence signal region (Myco_arth_vir_N) DUF387 PF04079.11 gi|410671319|ref|YP_006923690.1| - 0.0019 17.5 0.4 0.15 11.4 0.0 1.8 1 1 1 2 2 2 2 Putative transcriptional regulators (Ypuh-like) HTH_24 PF13412.1 gi|410671319|ref|YP_006923690.1| - 0.014 14.7 0.0 0.023 14.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|410671319|ref|YP_006923690.1| - 0.022 14.4 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 MarR family RuvB_C PF05491.8 gi|410671319|ref|YP_006923690.1| - 0.031 13.8 0.1 3.3 7.4 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus MCRS_N PF13325.1 gi|410671319|ref|YP_006923690.1| - 0.054 12.9 0.1 0.31 10.5 0.1 2.0 1 1 0 1 1 1 0 N-terminal region of micro-spherule protein HTH_11 PF08279.7 gi|410671319|ref|YP_006923690.1| - 0.062 12.9 0.7 0.12 12.0 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_IclR PF09339.5 gi|410671319|ref|YP_006923690.1| - 0.087 12.4 0.1 0.22 11.1 0.0 1.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain CARDB PF07705.6 gi|410671320|ref|YP_006923691.1| - 1.9e-12 47.0 3.6 3e-05 23.9 0.1 3.4 3 0 0 3 3 3 2 CARDB DUF11 PF01345.13 gi|410671320|ref|YP_006923691.1| - 0.006 16.5 4.0 2.6 8.1 0.1 3.3 3 1 1 4 4 4 2 Domain of unknown function DUF11 TMEMspv1-c74-12 PF11044.3 gi|410671320|ref|YP_006923691.1| - 0.033 13.7 0.4 0.08 12.4 0.3 1.6 1 0 0 1 1 1 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein Big_1 PF02369.11 gi|410671320|ref|YP_006923691.1| - 0.036 13.9 0.1 0.46 10.4 0.0 2.8 2 1 2 4 4 4 0 Bacterial Ig-like domain (group 1) NPCBM_assoc PF10633.4 gi|410671320|ref|YP_006923691.1| - 0.047 13.7 0.0 30 4.7 0.0 3.6 4 1 0 4 4 4 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Vpu PF00558.14 gi|410671320|ref|YP_006923691.1| - 0.065 12.7 0.1 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Vpu protein DUF4625 PF15418.1 gi|410671320|ref|YP_006923691.1| - 0.084 12.9 0.3 3.1 7.9 0.0 3.1 3 1 0 3 3 3 0 Domain of unknown function (DUF4625) FtsX PF02687.16 gi|410671321|ref|YP_006923692.1| - 4.8e-16 58.6 15.0 6.6e-15 54.9 8.3 2.4 2 0 0 2 2 2 2 FtsX-like permease family MacB_PCD PF12704.2 gi|410671321|ref|YP_006923692.1| - 1.8e-12 47.3 1.7 1.8e-12 47.3 1.2 1.7 2 0 0 2 2 2 1 MacB-like periplasmic core domain PRA1 PF03208.14 gi|410671321|ref|YP_006923692.1| - 5.9 6.2 13.8 0.026 13.8 2.2 2.3 3 0 0 3 3 3 0 PRA1 family protein ABC_tran PF00005.22 gi|410671322|ref|YP_006923693.1| - 3.1e-33 114.9 0.0 4.5e-33 114.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410671322|ref|YP_006923693.1| - 4e-15 56.5 0.0 4.6e-08 33.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|410671322|ref|YP_006923693.1| - 2.2e-08 33.6 0.0 4.1e-08 32.7 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|410671322|ref|YP_006923693.1| - 1.4e-06 27.6 0.0 0.016 14.3 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA_18 PF13238.1 gi|410671322|ref|YP_006923693.1| - 8.9e-06 26.0 0.1 0.00091 19.5 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|410671322|ref|YP_006923693.1| - 2.6e-05 24.3 0.1 9.4e-05 22.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|410671322|ref|YP_006923693.1| - 8e-05 22.6 0.1 0.00014 21.9 0.0 1.6 1 1 1 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.1 gi|410671322|ref|YP_006923693.1| - 0.00015 21.5 0.3 0.0018 18.1 0.1 2.5 2 1 0 2 2 1 1 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.1 gi|410671322|ref|YP_006923693.1| - 0.00021 21.2 0.3 0.00089 19.2 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|410671322|ref|YP_006923693.1| - 0.00027 20.4 0.1 0.045 13.1 0.1 2.3 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|410671322|ref|YP_006923693.1| - 0.00028 20.3 0.1 0.00052 19.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|410671322|ref|YP_006923693.1| - 0.0013 19.1 0.6 0.0031 17.8 0.4 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|410671322|ref|YP_006923693.1| - 0.0014 19.4 0.7 0.0028 18.4 0.5 1.9 1 1 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|410671322|ref|YP_006923693.1| - 0.0033 16.9 0.0 0.007 15.8 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family DUF258 PF03193.11 gi|410671322|ref|YP_006923693.1| - 0.0043 16.2 0.1 0.0099 15.0 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|410671322|ref|YP_006923693.1| - 0.0069 15.8 0.0 0.041 13.3 0.1 2.0 1 1 1 2 2 2 1 AAA-like domain IstB_IS21 PF01695.12 gi|410671322|ref|YP_006923693.1| - 0.012 15.0 0.1 0.18 11.1 0.0 2.3 2 1 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.7 gi|410671322|ref|YP_006923693.1| - 0.012 15.2 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain cobW PF02492.14 gi|410671322|ref|YP_006923693.1| - 0.015 14.7 0.1 0.1 11.9 0.0 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|410671322|ref|YP_006923693.1| - 0.016 14.9 0.0 0.04 13.6 0.0 1.7 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF3584 PF12128.3 gi|410671322|ref|YP_006923693.1| - 0.024 11.9 0.0 0.031 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) G-alpha PF00503.15 gi|410671322|ref|YP_006923693.1| - 0.025 13.2 0.0 0.031 12.9 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.1 gi|410671322|ref|YP_006923693.1| - 0.037 13.9 0.1 0.051 13.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|410671322|ref|YP_006923693.1| - 0.038 12.8 0.0 0.11 11.2 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.1 gi|410671322|ref|YP_006923693.1| - 0.038 13.5 0.0 0.093 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|410671322|ref|YP_006923693.1| - 0.067 13.6 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein UPF0079 PF02367.12 gi|410671322|ref|YP_006923693.1| - 0.074 12.6 0.1 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|410671322|ref|YP_006923693.1| - 0.086 12.5 0.1 0.6 9.8 0.0 2.2 1 1 1 2 2 2 0 NTPase Arch_ATPase PF01637.13 gi|410671322|ref|YP_006923693.1| - 0.086 12.5 0.3 0.16 11.6 0.2 1.7 1 1 0 1 1 1 0 Archaeal ATPase Pox_A32 PF04665.7 gi|410671322|ref|YP_006923693.1| - 0.16 11.2 0.7 0.31 10.2 0.2 1.8 2 1 0 2 2 2 0 Poxvirus A32 protein CxxCxxCC PF03692.10 gi|410671323|ref|YP_006923694.1| - 3.9e-10 40.0 1.7 6.1e-10 39.4 1.2 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain CBS PF00571.23 gi|410671324|ref|YP_006923695.1| - 3.4e-45 151.5 3.5 4.4e-12 45.5 0.0 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|410671325|ref|YP_006923696.1| - 1.3e-60 200.9 6.1 1e-15 57.1 0.0 4.2 4 0 0 4 4 4 4 CBS domain DPPIV_N PF00930.16 gi|410671326|ref|YP_006923697.1| - 1.3e-05 24.0 14.8 0.32 9.5 0.0 5.5 4 1 2 6 6 6 5 Dipeptidyl peptidase IV (DPP IV) N-terminal region Kelch_4 PF13418.1 gi|410671326|ref|YP_006923697.1| - 0.00047 19.8 0.7 45 3.9 0.0 5.5 6 0 0 6 6 6 1 Galactose oxidase, central domain DUF581 PF04570.9 gi|410671326|ref|YP_006923697.1| - 0.049 12.9 9.0 54 3.1 0.0 5.4 6 0 0 6 6 6 0 Protein of unknown function (DUF581) UDG PF03167.14 gi|410671327|ref|YP_006923698.1| - 1.2e-05 24.7 0.0 1.4e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily MS_channel PF00924.13 gi|410671328|ref|YP_006923699.1| - 5.7e-25 87.8 0.2 1.4e-24 86.5 0.1 1.7 1 1 0 1 1 1 1 Mechanosensitive ion channel FixQ PF05545.6 gi|410671329|ref|YP_006923700.1| - 0.0014 18.1 1.4 0.0014 18.1 1.0 1.8 1 1 1 2 2 2 1 Cbb3-type cytochrome oxidase component FixQ CARDB PF07705.6 gi|410671331|ref|YP_006923702.1| - 0.043 13.8 0.1 0.078 13.0 0.1 1.4 1 0 0 1 1 1 0 CARDB Hexapep PF00132.19 gi|410671332|ref|YP_006923703.1| - 5.7e-19 66.6 20.2 1.4e-10 40.1 2.9 4.6 4 1 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|410671332|ref|YP_006923703.1| - 7.4e-06 25.4 15.4 1.9e-05 24.1 2.7 3.7 2 1 2 4 4 4 2 Hexapeptide repeat of succinyl-transferase RecR PF02132.10 gi|410671333|ref|YP_006923704.1| - 1.3e-05 24.4 1.4 0.00051 19.4 0.0 2.1 1 1 1 2 2 2 1 RecR protein DZR PF12773.2 gi|410671333|ref|YP_006923704.1| - 0.0024 17.6 1.5 0.0029 17.3 1.0 1.1 1 0 0 1 1 1 1 Double zinc ribbon FYVE PF01363.16 gi|410671333|ref|YP_006923704.1| - 0.0036 17.1 0.7 0.0037 17.1 0.5 1.1 1 0 0 1 1 1 1 FYVE zinc finger zinc-ribbons_6 PF07191.7 gi|410671333|ref|YP_006923704.1| - 0.0049 16.6 1.4 0.0056 16.4 1.0 1.1 1 0 0 1 1 1 1 zinc-ribbons Cys_rich_CPCC PF14206.1 gi|410671333|ref|YP_006923704.1| - 0.0057 16.1 0.9 0.0061 16.0 0.6 1.1 1 0 0 1 1 1 1 Cysteine-rich CPCC FYDLN_acid PF09538.5 gi|410671333|ref|YP_006923704.1| - 0.031 14.8 0.1 0.032 14.8 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) OrfB_Zn_ribbon PF07282.6 gi|410671333|ref|YP_006923704.1| - 0.044 13.4 0.9 0.053 13.1 0.7 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2HC5 PF06221.8 gi|410671333|ref|YP_006923704.1| - 0.064 13.0 1.2 0.078 12.7 0.9 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Cript PF10235.4 gi|410671333|ref|YP_006923704.1| - 0.07 13.4 1.1 0.076 13.3 0.8 1.1 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT UPF0547 PF10571.4 gi|410671333|ref|YP_006923704.1| - 0.071 12.8 7.3 0.29 10.8 5.1 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Guanylin PF02058.10 gi|410671333|ref|YP_006923704.1| - 0.086 12.9 0.2 0.094 12.7 0.2 1.2 1 0 0 1 1 1 0 Guanylin precursor Rubredoxin PF00301.15 gi|410671333|ref|YP_006923704.1| - 0.088 12.6 1.9 6.4 6.7 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin zf-IS66 PF13005.2 gi|410671333|ref|YP_006923704.1| - 0.098 12.6 1.0 0.098 12.6 0.7 1.7 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-RING_4 PF14570.1 gi|410671333|ref|YP_006923704.1| - 0.1 12.2 3.9 0.27 10.8 2.8 1.6 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain DUF3449 PF11931.3 gi|410671333|ref|YP_006923704.1| - 0.1 12.0 0.4 0.11 12.0 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3449) zinc_ribbon_2 PF13240.1 gi|410671333|ref|YP_006923704.1| - 0.12 11.9 1.6 0.24 10.9 1.1 1.5 1 1 0 1 1 1 0 zinc-ribbon domain Ogr_Delta PF04606.7 gi|410671333|ref|YP_006923704.1| - 0.18 11.5 1.2 1.5 8.4 0.2 2.0 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger TF_Zn_Ribbon PF08271.7 gi|410671333|ref|YP_006923704.1| - 0.21 10.9 1.2 0.34 10.2 0.9 1.3 1 1 0 1 1 1 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.8 gi|410671333|ref|YP_006923704.1| - 0.26 10.8 1.5 0.38 10.2 1.1 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-C4_Topoisom PF01396.14 gi|410671333|ref|YP_006923704.1| - 0.26 10.8 1.4 0.8 9.2 0.1 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Prok-RING_1 PF14446.1 gi|410671333|ref|YP_006923704.1| - 0.31 10.7 2.8 0.63 9.8 1.9 1.5 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|410671333|ref|YP_006923704.1| - 0.36 10.1 1.9 1.6 8.0 1.3 1.9 1 1 1 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.11 gi|410671333|ref|YP_006923704.1| - 0.61 9.7 2.9 9.4 5.9 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger Auto_anti-p27 PF06677.7 gi|410671333|ref|YP_006923704.1| - 5.5 6.8 6.4 1.7e+02 2.0 4.8 2.1 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|410671334|ref|YP_006923705.1| - 0.0062 16.3 1.4 0.011 15.4 1.0 1.4 1 1 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|410671334|ref|YP_006923705.1| - 0.007 16.0 0.3 0.0084 15.7 0.2 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-FPG_IleRS PF06827.9 gi|410671334|ref|YP_006923705.1| - 0.02 14.4 0.3 0.03 13.9 0.2 1.2 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-ribbon_3 PF13248.1 gi|410671334|ref|YP_006923705.1| - 0.024 13.8 1.4 0.14 11.4 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|410671334|ref|YP_006923705.1| - 0.15 11.9 3.3 1.8 8.5 0.2 2.0 2 0 0 2 2 2 0 Zinc ribbon domain zf-TFIIB PF13453.1 gi|410671334|ref|YP_006923705.1| - 0.27 10.4 1.4 0.64 9.2 1.0 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger C1_3 PF07649.7 gi|410671334|ref|YP_006923705.1| - 0.32 11.0 4.5 0.72 9.9 3.1 1.6 1 1 0 1 1 1 0 C1-like domain Prok-RING_1 PF14446.1 gi|410671334|ref|YP_006923705.1| - 0.55 10.0 2.6 1.3 8.7 1.8 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|410671334|ref|YP_006923705.1| - 0.56 9.9 4.4 9.4 6.0 0.7 2.1 2 0 0 2 2 2 0 Nudix N-terminal TFIIS_C PF01096.13 gi|410671334|ref|YP_006923705.1| - 0.58 9.8 3.8 1.2 8.8 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|410671334|ref|YP_006923705.1| - 2.1 7.9 7.1 4.3 6.9 1.7 2.1 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|410671334|ref|YP_006923705.1| - 4.1 6.7 5.0 25 4.2 3.5 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding RimK PF08443.6 gi|410671335|ref|YP_006923706.1| - 9.8e-45 152.3 0.0 1.7e-44 151.6 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|410671335|ref|YP_006923706.1| - 5.5e-16 58.1 0.0 1.7e-15 56.6 0.0 1.7 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|410671335|ref|YP_006923706.1| - 2.8e-13 50.0 0.0 3.9e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|410671335|ref|YP_006923706.1| - 2.8e-07 30.5 0.0 4.2e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Synapsin_C PF02750.9 gi|410671335|ref|YP_006923706.1| - 5.8e-05 22.2 0.0 7.5e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Synapsin, ATP binding domain ATPgrasp_Ter PF15632.1 gi|410671335|ref|YP_006923706.1| - 0.0001 21.1 0.0 0.00039 19.2 0.0 1.9 2 1 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|410671335|ref|YP_006923706.1| - 0.00018 20.8 0.0 0.00041 19.7 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|410671335|ref|YP_006923706.1| - 0.003 16.8 0.0 0.031 13.5 0.0 2.1 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.1 gi|410671335|ref|YP_006923706.1| - 0.044 12.9 0.0 0.074 12.2 0.0 1.2 1 0 0 1 1 1 0 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|410671335|ref|YP_006923706.1| - 0.074 12.4 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 ATP-grasp domain ATPgrasp_YheCD PF14398.1 gi|410671335|ref|YP_006923706.1| - 0.09 11.5 0.3 18 3.9 0.0 2.8 1 1 1 3 3 3 0 YheC/D like ATP-grasp DUF1724 PF08350.5 gi|410671338|ref|YP_006923709.1| - 5.4e-16 57.8 1.9 7.9e-16 57.3 0.4 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) TPR_12 PF13424.1 gi|410671339|ref|YP_006923710.1| - 5e-31 106.4 40.2 1.1e-09 38.0 1.1 8.9 7 2 2 9 9 9 7 Tetratricopeptide repeat TPR_11 PF13414.1 gi|410671339|ref|YP_006923710.1| - 7e-22 76.8 42.8 2.5e-08 33.4 2.4 9.6 6 3 1 9 9 9 5 TPR repeat TPR_2 PF07719.12 gi|410671339|ref|YP_006923710.1| - 3.3e-17 60.9 44.6 0.013 15.3 0.2 12.9 15 0 0 15 15 14 5 Tetratricopeptide repeat TPR_10 PF13374.1 gi|410671339|ref|YP_006923710.1| - 8.8e-16 57.2 30.2 0.0015 18.3 0.1 9.9 10 0 0 10 10 10 5 Tetratricopeptide repeat TPR_1 PF00515.23 gi|410671339|ref|YP_006923710.1| - 2.3e-14 52.2 34.5 0.0041 16.6 0.1 10.2 11 0 0 11 11 11 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|410671339|ref|YP_006923710.1| - 8.3e-13 48.6 21.8 0.048 14.3 0.1 8.9 8 2 1 9 9 9 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|410671339|ref|YP_006923710.1| - 1.8e-12 46.6 27.3 2.3 9.1 0.1 13.0 13 1 1 14 14 12 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|410671339|ref|YP_006923710.1| - 5e-09 35.2 26.0 0.74 9.7 0.1 11.0 11 1 2 13 13 13 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|410671339|ref|YP_006923710.1| - 1.8e-07 30.8 23.9 3 8.2 0.0 11.3 12 1 0 12 12 12 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|410671339|ref|YP_006923710.1| - 1.2e-05 25.5 26.6 1.4 9.2 0.8 9.7 8 1 3 11 11 11 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|410671339|ref|YP_006923710.1| - 2.2e-05 23.8 43.6 0.048 13.4 0.1 10.7 12 0 0 12 12 12 4 Tetratricopeptide repeat ETC_C1_NDUFA5 PF04716.9 gi|410671339|ref|YP_006923710.1| - 0.024 14.1 0.3 0.64 9.5 0.0 3.6 4 0 0 4 4 4 0 ETC complex I subunit conserved region Fis1_TPR_C PF14853.1 gi|410671339|ref|YP_006923710.1| - 0.055 13.3 12.8 3.6 7.5 0.2 6.4 8 0 0 8 8 6 0 Fis1 C-terminal tetratricopeptide repeat DUF2225 PF09986.4 gi|410671339|ref|YP_006923710.1| - 0.14 11.5 15.9 0.72 9.2 0.3 4.4 3 1 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2225) TPR_6 PF13174.1 gi|410671339|ref|YP_006923710.1| - 0.33 11.5 26.5 10 6.8 0.2 9.9 12 0 0 12 12 11 0 Tetratricopeptide repeat MIT PF04212.13 gi|410671339|ref|YP_006923710.1| - 0.77 9.6 35.7 0.15 11.9 0.4 9.2 9 2 2 11 11 10 0 MIT (microtubule interacting and transport) domain Abhydrolase_5 PF12695.2 gi|410671341|ref|YP_006923712.1| - 2.2e-19 69.6 0.1 2.7e-19 69.3 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|410671341|ref|YP_006923712.1| - 5e-12 46.2 1.3 1.6e-06 28.1 0.7 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|410671341|ref|YP_006923712.1| - 8.8e-11 41.5 0.0 1.2e-10 41.0 0.0 1.0 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|410671341|ref|YP_006923712.1| - 1.6e-05 24.1 0.1 0.11 11.6 0.1 2.5 2 1 1 3 3 3 2 Prolyl oligopeptidase family BAAT_C PF08840.6 gi|410671341|ref|YP_006923712.1| - 0.00015 21.5 0.0 0.0021 17.8 0.0 2.0 1 1 1 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S15 PF02129.13 gi|410671341|ref|YP_006923712.1| - 0.0025 17.2 0.1 0.016 14.6 0.0 1.8 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_2 PF02230.11 gi|410671341|ref|YP_006923712.1| - 0.029 13.8 0.0 2.8 7.3 0.0 2.1 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Abhydrolase_1 PF00561.15 gi|410671341|ref|YP_006923712.1| - 0.054 13.0 0.1 1.2 8.5 0.1 2.1 1 1 1 2 2 2 0 alpha/beta hydrolase fold Esterase PF00756.15 gi|410671341|ref|YP_006923712.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.4 2 0 0 2 2 2 0 Putative esterase AXE1 PF05448.7 gi|410671341|ref|YP_006923712.1| - 0.18 10.2 0.0 2.1 6.7 0.0 2.1 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) Pribosyltran PF00156.22 gi|410671342|ref|YP_006923713.1| - 4.1e-28 97.6 0.9 7.5e-28 96.7 0.6 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|410671342|ref|YP_006923713.1| - 0.00095 18.4 0.2 0.0015 17.7 0.1 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|410671342|ref|YP_006923713.1| - 0.0017 17.6 0.1 0.0033 16.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase PRTase_3 PF15610.1 gi|410671342|ref|YP_006923713.1| - 0.043 12.7 0.0 1.9 7.3 0.0 2.1 1 1 1 2 2 2 0 PRTase ComF-like TPR_1 PF00515.23 gi|410671343|ref|YP_006923714.1| - 1.7e-143 460.9 47.9 2.6e-09 36.2 0.0 24.1 25 0 0 25 25 24 22 Tetratricopeptide repeat TPR_11 PF13414.1 gi|410671343|ref|YP_006923714.1| - 1.8e-128 418.3 55.1 6.7e-14 51.2 0.3 15.5 8 5 9 17 17 17 17 TPR repeat TPR_2 PF07719.12 gi|410671343|ref|YP_006923714.1| - 7.1e-117 372.1 38.4 1.9e-06 27.3 0.7 24.5 25 0 0 25 25 25 21 Tetratricopeptide repeat TPR_16 PF13432.1 gi|410671343|ref|YP_006923714.1| - 1.5e-84 277.2 24.7 3.8e-08 33.8 0.3 15.7 7 4 9 17 17 17 16 Tetratricopeptide repeat TPR_17 PF13431.1 gi|410671343|ref|YP_006923714.1| - 8.7e-73 234.5 43.6 9.7e-05 22.2 0.0 24.4 25 0 0 25 25 24 15 Tetratricopeptide repeat TPR_14 PF13428.1 gi|410671343|ref|YP_006923714.1| - 6e-69 222.1 14.6 0.0015 18.9 0.0 22.4 6 6 17 23 23 23 16 Tetratricopeptide repeat TPR_12 PF13424.1 gi|410671343|ref|YP_006923714.1| - 4e-64 212.5 46.7 3.2e-08 33.4 0.6 15.6 6 5 10 16 16 16 14 Tetratricopeptide repeat TPR_8 PF13181.1 gi|410671343|ref|YP_006923714.1| - 1.1e-60 196.9 44.3 9.5e-05 21.9 0.0 21.4 19 2 3 22 22 21 13 Tetratricopeptide repeat TPR_19 PF14559.1 gi|410671343|ref|YP_006923714.1| - 1.2e-53 179.3 27.0 1.7e-06 28.2 0.0 14.5 9 5 4 15 15 15 11 Tetratricopeptide repeat TPR_9 PF13371.1 gi|410671343|ref|YP_006923714.1| - 6.4e-51 170.1 12.7 4.3e-07 29.6 0.0 15.2 7 3 9 17 17 17 12 Tetratricopeptide repeat TPR_7 PF13176.1 gi|410671343|ref|YP_006923714.1| - 2e-47 155.2 30.5 0.0067 16.1 0.0 21.2 20 2 3 23 23 22 11 Tetratricopeptide repeat TPR_6 PF13174.1 gi|410671343|ref|YP_006923714.1| - 3.2e-45 149.5 42.8 0.0042 17.4 0.5 23.2 25 0 0 25 25 23 9 Tetratricopeptide repeat Apc3 PF12895.2 gi|410671343|ref|YP_006923714.1| - 3.2e-37 126.5 28.4 4.3e-05 23.5 0.2 11.9 4 2 10 14 14 13 12 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.1 gi|410671343|ref|YP_006923714.1| - 3.3e-20 71.7 35.6 0.016 15.0 0.0 15.1 14 1 4 18 18 17 7 Fis1 C-terminal tetratricopeptide repeat MIT PF04212.13 gi|410671343|ref|YP_006923714.1| - 4.2e-17 61.7 41.9 0.0059 16.4 0.3 14.8 16 0 0 16 16 14 4 MIT (microtubule interacting and transport) domain NARP1 PF12569.3 gi|410671343|ref|YP_006923714.1| - 6.8e-13 48.2 8.8 0.17 10.6 0.0 9.0 6 3 3 9 9 9 4 NMDA receptor-regulated protein 1 DUF3856 PF12968.2 gi|410671343|ref|YP_006923714.1| - 1.5e-11 44.3 11.4 0.72 9.6 0.0 12.1 10 3 3 13 13 13 1 Domain of Unknown Function (DUF3856) Alkyl_sulf_dimr PF14863.1 gi|410671343|ref|YP_006923714.1| - 5.1e-09 36.4 2.6 0.98 9.6 0.1 6.0 4 1 0 5 5 5 1 Alkyl sulfatase dimerisation TPR_4 PF07721.9 gi|410671343|ref|YP_006923714.1| - 6.7e-09 35.3 0.4 26 5.6 0.0 9.9 11 0 0 11 11 8 0 Tetratricopeptide repeat BTAD PF03704.12 gi|410671343|ref|YP_006923714.1| - 2.1e-08 34.5 10.2 1.7 8.9 0.1 8.5 7 3 2 9 9 9 1 Bacterial transcriptional activator domain TPR_5 PF12688.2 gi|410671343|ref|YP_006923714.1| - 1e-06 28.7 14.7 14 5.7 0.0 9.5 9 2 1 10 10 8 0 Tetratrico peptide repeat TPR_10 PF13374.1 gi|410671343|ref|YP_006923714.1| - 1.3e-05 24.9 25.9 16 5.6 0.0 12.4 15 0 0 15 15 13 0 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|410671343|ref|YP_006923714.1| - 1.4e-05 24.4 2.4 0.047 12.8 0.1 5.1 5 0 0 5 5 5 1 Coatomer epsilon subunit Aida_N PF08910.5 gi|410671343|ref|YP_006923714.1| - 0.001 19.2 0.6 13 6.1 0.0 5.3 5 1 1 6 6 5 0 Aida N-terminus RPN7 PF10602.4 gi|410671343|ref|YP_006923714.1| - 0.0066 15.8 9.3 9.6 5.5 0.0 6.6 7 1 0 8 8 8 0 26S proteasome subunit RPN7 TPR_20 PF14561.1 gi|410671343|ref|YP_006923714.1| - 0.0086 16.1 10.6 4.1 7.6 0.0 6.8 9 1 0 9 9 6 1 Tetratricopeptide repeat PPTA PF01239.17 gi|410671343|ref|YP_006923714.1| - 0.06 12.7 6.3 2.8 7.4 0.1 5.2 6 0 0 6 6 6 0 Protein prenyltransferase alpha subunit repeat TPR_3 PF07720.7 gi|410671343|ref|YP_006923714.1| - 0.77 9.6 41.6 1.2 9.0 0.4 10.5 14 0 0 14 14 10 0 Tetratricopeptide repeat HAD_2 PF13419.1 gi|410671344|ref|YP_006923715.1| - 3.1e-22 79.6 0.0 3.6e-22 79.4 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|410671344|ref|YP_006923715.1| - 4.6e-08 33.7 0.0 3.1e-07 31.0 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|410671344|ref|YP_006923715.1| - 9.7e-08 31.6 0.0 2.4e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like NIF PF03031.13 gi|410671344|ref|YP_006923715.1| - 0.00079 19.1 0.0 0.011 15.3 0.0 2.0 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase TPR_14 PF13428.1 gi|410671345|ref|YP_006923716.1| - 2e-08 34.1 0.6 0.93 10.3 0.0 4.5 2 1 2 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|410671345|ref|YP_006923716.1| - 7.6e-08 32.8 0.1 0.0014 19.2 0.0 3.1 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|410671345|ref|YP_006923716.1| - 3e-07 29.8 0.4 0.62 10.1 0.0 4.4 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|410671345|ref|YP_006923716.1| - 5.7e-07 28.8 0.6 0.19 11.4 0.0 3.7 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|410671345|ref|YP_006923716.1| - 3.2e-06 27.2 1.3 2.5 8.7 0.0 4.6 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|410671345|ref|YP_006923716.1| - 3.1e-05 23.5 0.3 0.00091 18.8 0.0 3.0 2 1 1 3 3 3 2 TPR repeat TPR_19 PF14559.1 gi|410671345|ref|YP_006923716.1| - 8.6e-05 22.8 0.5 0.0088 16.3 0.0 3.0 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|410671345|ref|YP_006923716.1| - 0.0019 17.8 1.1 10 6.1 0.0 4.0 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|410671345|ref|YP_006923716.1| - 0.002 17.7 0.3 2.7 7.9 0.0 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|410671345|ref|YP_006923716.1| - 0.0041 15.9 0.4 0.0066 15.2 0.3 1.4 1 1 0 1 1 1 1 NMDA receptor-regulated protein 1 TPR_9 PF13371.1 gi|410671345|ref|YP_006923716.1| - 0.046 13.5 0.0 1.1 9.1 0.0 2.6 2 1 1 3 3 3 0 Tetratricopeptide repeat PALP PF00291.20 gi|410671346|ref|YP_006923717.1| - 2e-26 92.9 0.1 2.8e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PK_C PF02887.11 gi|410671346|ref|YP_006923717.1| - 0.014 14.9 0.2 0.51 9.9 0.0 2.2 2 0 0 2 2 2 0 Pyruvate kinase, alpha/beta domain ABC_tran PF00005.22 gi|410671347|ref|YP_006923718.1| - 6.6e-14 52.3 0.0 1.1e-13 51.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410671347|ref|YP_006923718.1| - 2e-07 31.2 0.1 0.0012 18.9 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|410671347|ref|YP_006923718.1| - 2.8e-05 23.5 0.1 7.5e-05 22.1 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|410671347|ref|YP_006923718.1| - 3.4e-05 24.2 0.0 3.8e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|410671347|ref|YP_006923718.1| - 8.9e-05 22.6 0.1 0.00051 20.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|410671347|ref|YP_006923718.1| - 0.00067 19.6 0.0 0.0014 18.6 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|410671347|ref|YP_006923718.1| - 0.00086 18.5 0.3 0.049 12.8 0.2 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|410671347|ref|YP_006923718.1| - 0.0017 17.9 0.0 0.0026 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|410671347|ref|YP_006923718.1| - 0.0024 17.5 0.3 0.0079 15.8 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|410671347|ref|YP_006923718.1| - 0.0024 18.1 0.1 0.016 15.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|410671347|ref|YP_006923718.1| - 0.0026 18.5 1.0 0.0057 17.4 0.7 2.0 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|410671347|ref|YP_006923718.1| - 0.0027 17.4 0.2 0.012 15.2 0.1 1.9 1 1 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|410671347|ref|YP_006923718.1| - 0.0031 17.4 0.0 0.11 12.3 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|410671347|ref|YP_006923718.1| - 0.0059 16.3 0.0 0.015 15.0 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|410671347|ref|YP_006923718.1| - 0.006 16.0 0.0 0.012 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|410671347|ref|YP_006923718.1| - 0.0089 15.7 1.0 1 9.0 0.1 2.4 2 0 0 2 2 2 1 NTPase ResIII PF04851.10 gi|410671347|ref|YP_006923718.1| - 0.011 15.6 0.0 0.02 14.7 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF258 PF03193.11 gi|410671347|ref|YP_006923718.1| - 0.012 14.7 0.0 0.022 13.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_2 PF07724.9 gi|410671347|ref|YP_006923718.1| - 0.012 15.5 0.0 0.09 12.6 0.0 2.0 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) ArgK PF03308.11 gi|410671347|ref|YP_006923718.1| - 0.014 14.2 0.4 0.029 13.1 0.0 1.7 2 0 0 2 2 2 0 ArgK protein AAA_33 PF13671.1 gi|410671347|ref|YP_006923718.1| - 0.017 15.0 0.0 0.043 13.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|410671347|ref|YP_006923718.1| - 0.029 14.3 0.2 0.059 13.3 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase T2SE PF00437.15 gi|410671347|ref|YP_006923718.1| - 0.036 12.9 0.0 0.061 12.2 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein ABC_ATPase PF09818.4 gi|410671347|ref|YP_006923718.1| - 0.049 12.2 0.0 0.077 11.5 0.0 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class NB-ARC PF00931.17 gi|410671347|ref|YP_006923718.1| - 0.053 12.3 0.3 0.14 11.0 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.7 gi|410671347|ref|YP_006923718.1| - 0.058 13.0 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA PF00004.24 gi|410671347|ref|YP_006923718.1| - 0.059 13.5 0.2 1.6 8.8 0.2 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|410671347|ref|YP_006923718.1| - 0.07 12.8 0.1 1.9 8.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|410671347|ref|YP_006923718.1| - 0.084 11.9 0.1 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin cobW PF02492.14 gi|410671347|ref|YP_006923718.1| - 0.1 12.0 0.3 0.28 10.6 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|410671347|ref|YP_006923718.1| - 0.12 11.7 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain cobW PF02492.14 gi|410671348|ref|YP_006923719.1| - 3e-15 56.0 0.0 4.8e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|410671348|ref|YP_006923719.1| - 1.4e-05 24.7 0.4 3.2e-05 23.5 0.3 1.6 1 0 0 1 1 1 1 Part of AAA domain ArgK PF03308.11 gi|410671348|ref|YP_006923719.1| - 0.00011 21.1 0.5 0.0052 15.5 0.1 2.2 2 0 0 2 2 2 1 ArgK protein MobB PF03205.9 gi|410671348|ref|YP_006923719.1| - 0.00064 19.4 0.4 0.0011 18.7 0.3 1.5 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|410671348|ref|YP_006923719.1| - 0.0011 18.0 0.0 0.0017 17.4 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin KTI12 PF08433.5 gi|410671348|ref|YP_006923719.1| - 0.0051 16.0 0.0 0.0087 15.2 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|410671348|ref|YP_006923719.1| - 0.0062 16.5 0.1 0.009 16.0 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.17 gi|410671348|ref|YP_006923719.1| - 0.0069 15.8 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain NACHT PF05729.7 gi|410671348|ref|YP_006923719.1| - 0.017 14.7 0.0 0.041 13.5 0.0 1.6 2 0 0 2 2 2 0 NACHT domain Zot PF05707.7 gi|410671348|ref|YP_006923719.1| - 0.025 14.0 0.0 0.036 13.5 0.0 1.2 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_25 PF13481.1 gi|410671348|ref|YP_006923719.1| - 0.025 13.9 0.0 0.038 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.10 gi|410671348|ref|YP_006923719.1| - 0.049 12.5 0.1 0.099 11.5 0.1 1.5 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain DEAD PF00270.24 gi|410671348|ref|YP_006923719.1| - 0.052 13.0 0.0 0.33 10.4 0.0 2.0 1 1 0 1 1 1 0 DEAD/DEAH box helicase UvrD-helicase PF00580.16 gi|410671348|ref|YP_006923719.1| - 0.057 12.7 0.3 0.073 12.3 0.2 1.1 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain AAA_10 PF12846.2 gi|410671348|ref|YP_006923719.1| - 0.079 12.3 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain DUF835 PF05763.7 gi|410671348|ref|YP_006923719.1| - 0.11 12.1 0.0 13 5.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF835) Viral_helicase1 PF01443.13 gi|410671348|ref|YP_006923719.1| - 0.11 12.0 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.1 gi|410671348|ref|YP_006923719.1| - 0.11 12.8 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|410671348|ref|YP_006923719.1| - 0.11 11.0 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF2075 PF09848.4 gi|410671348|ref|YP_006923719.1| - 0.12 11.3 0.0 0.15 10.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|410671348|ref|YP_006923719.1| - 0.13 12.3 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|410671348|ref|YP_006923719.1| - 0.17 11.2 0.2 0.17 11.2 0.1 1.7 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain FeS PF04060.8 gi|410671349|ref|YP_006923720.1| - 4.1e-11 42.2 1.0 4.1e-11 42.2 0.7 1.7 2 0 0 2 2 2 1 Putative Fe-S cluster ChW PF07538.6 gi|410671349|ref|YP_006923720.1| - 0.059 12.9 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Clostridial hydrophobic W TPP_enzyme_N PF02776.13 gi|410671350|ref|YP_006923721.1| - 2.5e-12 46.6 0.0 2.9e-12 46.3 0.0 1.0 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR_N PF01855.14 gi|410671350|ref|YP_006923721.1| - 0.0012 18.4 0.0 0.0015 18.0 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DUF2683 PF10884.3 gi|410671350|ref|YP_006923721.1| - 0.15 11.9 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2683) TPP_enzyme_C PF02775.16 gi|410671351|ref|YP_006923722.1| - 4.2e-18 65.3 0.1 7.4e-18 64.5 0.1 1.4 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Response_reg PF00072.19 gi|410671351|ref|YP_006923722.1| - 0.11 12.5 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Response regulator receiver domain DUF39 PF01837.11 gi|410671352|ref|YP_006923723.1| - 6.4e-106 353.8 0.0 7.3e-106 353.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF39 Fer4_10 PF13237.1 gi|410671352|ref|YP_006923723.1| - 4.3e-05 23.2 15.4 9.1e-05 22.1 10.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410671352|ref|YP_006923723.1| - 8e-05 22.9 16.4 0.00018 21.8 11.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410671352|ref|YP_006923723.1| - 0.00013 22.1 16.3 0.00027 21.1 11.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410671352|ref|YP_006923723.1| - 0.0014 18.4 11.6 0.003 17.3 8.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|410671352|ref|YP_006923723.1| - 0.0042 16.6 12.3 0.021 14.3 0.6 3.3 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|410671352|ref|YP_006923723.1| - 0.019 14.8 14.8 0.03 14.1 4.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|410671352|ref|YP_006923723.1| - 0.039 13.9 17.4 0.22 11.6 12.5 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|410671352|ref|YP_006923723.1| - 0.041 13.7 6.3 0.08 12.8 4.4 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410671352|ref|YP_006923723.1| - 0.068 13.5 17.0 86 3.5 4.6 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF977 PF06163.6 gi|410671352|ref|YP_006923723.1| - 0.069 12.8 0.1 0.16 11.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) Fer4_4 PF12800.2 gi|410671352|ref|YP_006923723.1| - 0.092 13.1 0.6 0.092 13.1 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|410671352|ref|YP_006923723.1| - 0.23 12.2 13.0 0.29 11.8 0.4 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|410671352|ref|YP_006923723.1| - 0.91 9.5 14.2 0.24 11.4 1.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|410671352|ref|YP_006923723.1| - 3.4 8.3 11.3 26 5.4 0.0 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain DUF4375 PF14300.1 gi|410671353|ref|YP_006923724.1| - 0.11 12.5 0.6 0.4 10.6 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4375) IncA PF04156.9 gi|410671353|ref|YP_006923724.1| - 0.15 11.6 3.1 0.3 10.6 2.1 1.5 1 0 0 1 1 1 0 IncA protein COG2 PF06148.6 gi|410671353|ref|YP_006923724.1| - 0.51 10.2 4.0 4.8 7.0 0.4 2.9 2 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 TBPIP PF07106.8 gi|410671353|ref|YP_006923724.1| - 2.6 7.5 6.6 0.88 9.0 2.6 1.6 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) tRNA-synt_1b PF00579.20 gi|410671354|ref|YP_006923725.1| - 2.5e-55 187.6 0.0 3.1e-55 187.3 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|410671354|ref|YP_006923725.1| - 0.0011 17.7 0.0 0.94 8.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (K) Msg2_C PF12373.3 gi|410671354|ref|YP_006923725.1| - 2.5 7.3 4.2 0.89 8.8 0.8 1.8 2 0 0 2 2 2 0 Major surface glycoprotein 2 C terminal Thg1 PF04446.7 gi|410671355|ref|YP_006923726.1| - 6.7e-28 96.9 0.2 9.2e-28 96.5 0.1 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.1 gi|410671355|ref|YP_006923726.1| - 4.9e-26 90.8 0.0 6.3e-26 90.4 0.0 1.2 1 0 0 1 1 1 1 Thg1 C terminal domain PRC PF05239.11 gi|410671356|ref|YP_006923727.1| - 1e-14 54.1 3.7 1.2e-14 53.9 2.6 1.0 1 0 0 1 1 1 1 PRC-barrel domain Cadherin_2 PF08266.7 gi|410671356|ref|YP_006923727.1| - 0.067 12.7 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Cadherin-like Ldh_1_N PF00056.18 gi|410671358|ref|YP_006923729.1| - 2.5e-36 124.6 2.3 2.5e-36 124.6 1.6 1.5 2 0 0 2 2 2 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|410671358|ref|YP_006923729.1| - 7.6e-31 107.1 0.0 2.2e-30 105.6 0.0 1.7 2 0 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|410671358|ref|YP_006923729.1| - 0.00088 18.6 1.6 0.0024 17.2 1.1 1.8 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3Beta_HSD PF01073.14 gi|410671358|ref|YP_006923729.1| - 0.0013 17.5 0.4 0.002 16.8 0.3 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family F420_oxidored PF03807.12 gi|410671358|ref|YP_006923729.1| - 0.005 17.2 1.7 0.036 14.4 0.6 2.5 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|410671358|ref|YP_006923729.1| - 0.011 15.3 1.3 0.26 10.9 0.5 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyco_hydro_4 PF02056.11 gi|410671358|ref|YP_006923729.1| - 0.011 15.0 1.5 0.077 12.3 0.1 2.5 1 1 1 2 2 2 0 Family 4 glycosyl hydrolase polyprenyl_synt PF00348.12 gi|410671358|ref|YP_006923729.1| - 0.013 14.4 0.0 0.02 13.7 0.0 1.3 1 0 0 1 1 1 0 Polyprenyl synthetase DAO PF01266.19 gi|410671358|ref|YP_006923729.1| - 0.037 12.9 0.3 0.085 11.7 0.2 1.6 1 0 0 1 1 1 0 FAD dependent oxidoreductase ThiF PF00899.16 gi|410671358|ref|YP_006923729.1| - 0.057 13.2 0.3 0.15 11.8 0.1 1.8 2 0 0 2 2 2 0 ThiF family 2-Hacid_dh_C PF02826.14 gi|410671358|ref|YP_006923729.1| - 0.063 12.4 0.1 0.11 11.5 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|410671358|ref|YP_006923729.1| - 0.11 12.5 0.3 0.26 11.4 0.2 1.6 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_8 PF13450.1 gi|410671358|ref|YP_006923729.1| - 0.13 12.3 0.2 0.28 11.2 0.2 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_Gly3P_dh_N PF01210.18 gi|410671358|ref|YP_006923729.1| - 0.13 11.9 0.8 0.42 10.3 0.6 2.0 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.1 gi|410671358|ref|YP_006923729.1| - 0.13 12.4 0.3 0.3 11.3 0.2 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding RNase_H_2 PF13482.1 gi|410671359|ref|YP_006923730.1| - 2.9e-35 121.4 0.0 4.4e-35 120.9 0.0 1.3 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo1 PF03104.14 gi|410671359|ref|YP_006923730.1| - 0.0018 17.2 0.0 0.0028 16.5 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|410671359|ref|YP_006923730.1| - 0.026 14.0 0.0 0.84 9.1 0.0 2.2 1 1 1 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB HHH_5 PF14520.1 gi|410671359|ref|YP_006923730.1| - 0.027 14.6 0.0 0.11 12.6 0.0 2.1 2 1 0 2 2 2 0 Helix-hairpin-helix domain RNase_T PF00929.19 gi|410671359|ref|YP_006923730.1| - 0.11 12.8 0.0 0.45 10.7 0.0 2.0 2 0 0 2 2 2 0 Exonuclease UvrC_HhH_N PF08459.6 gi|410671360|ref|YP_006923731.1| - 2.4e-55 186.3 0.0 5.1e-55 185.2 0.0 1.6 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_2 PF12826.2 gi|410671360|ref|YP_006923731.1| - 2.1e-12 46.7 0.1 1.3e-11 44.2 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif GIY-YIG PF01541.19 gi|410671360|ref|YP_006923731.1| - 7e-11 42.3 0.0 1.7e-10 41.0 0.0 1.7 1 0 0 1 1 1 1 GIY-YIG catalytic domain HHH_5 PF14520.1 gi|410671360|ref|YP_006923731.1| - 3.2e-10 40.0 0.0 1e-09 38.4 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain UVR PF02151.14 gi|410671360|ref|YP_006923731.1| - 4.6e-09 35.5 0.2 1e-08 34.3 0.1 1.6 1 0 0 1 1 1 1 UvrB/uvrC motif HHH PF00633.18 gi|410671360|ref|YP_006923731.1| - 1.7e-06 27.3 0.1 0.016 14.8 0.0 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|410671360|ref|YP_006923731.1| - 0.0009 19.3 0.1 0.058 13.5 0.0 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|410671360|ref|YP_006923731.1| - 0.0026 17.6 0.1 0.024 14.5 0.1 2.3 1 1 0 1 1 1 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|410671360|ref|YP_006923731.1| - 0.0036 17.5 0.2 0.024 14.8 0.0 2.4 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold COOH-NH2_lig PF14395.1 gi|410671360|ref|YP_006923731.1| - 0.0055 15.7 0.2 0.053 12.5 0.0 2.1 2 0 0 2 2 2 1 Phage phiEco32-like COOH.NH2 ligase-type 2 GPI PF06560.6 gi|410671361|ref|YP_006923732.1| - 9e-59 197.5 1.3 1.1e-58 197.2 0.9 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.6 gi|410671361|ref|YP_006923732.1| - 1.1e-05 24.7 0.1 2.5e-05 23.6 0.1 1.6 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|410671361|ref|YP_006923732.1| - 0.0082 15.8 0.1 0.014 15.0 0.0 1.4 1 1 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|410671361|ref|YP_006923732.1| - 0.024 14.0 0.0 0.036 13.5 0.0 1.3 1 0 0 1 1 1 0 Cupin ARD PF03079.9 gi|410671361|ref|YP_006923732.1| - 0.15 12.0 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 ARD/ARD' family DUF128 PF01995.11 gi|410671362|ref|YP_006923733.1| - 2.5e-92 308.0 3.4 2.8e-92 307.9 2.3 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF128 DHH PF01368.15 gi|410671363|ref|YP_006923734.1| - 7.2e-17 61.3 0.2 1.1e-16 60.7 0.1 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|410671363|ref|YP_006923734.1| - 1.7e-14 53.2 0.6 3.5e-14 52.2 0.4 1.6 1 0 0 1 1 1 1 DHHA1 domain B12-binding PF02310.14 gi|410671363|ref|YP_006923734.1| - 0.0092 15.8 0.0 0.026 14.4 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain SelA PF03841.8 gi|410671363|ref|YP_006923734.1| - 0.081 11.6 0.1 0.25 10.0 0.0 1.7 2 0 0 2 2 2 0 L-seryl-tRNA selenium transferase Hjc PF01870.13 gi|410671364|ref|YP_006923735.1| - 0.024 14.2 0.0 0.088 12.4 0.0 2.0 1 1 1 2 2 2 0 Archaeal holliday junction resolvase (hjc) DUF3382 PF11862.3 gi|410671365|ref|YP_006923736.1| - 0.014 15.2 1.3 0.014 15.2 0.9 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3382) DUF4199 PF13858.1 gi|410671365|ref|YP_006923736.1| - 0.034 14.0 1.4 0.036 13.9 1.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) Flp_Fap PF04964.9 gi|410671365|ref|YP_006923736.1| - 0.11 12.1 2.1 0.11 12.1 0.2 1.8 2 0 0 2 2 2 0 Flp/Fap pilin component DUF2910 PF11139.3 gi|410671365|ref|YP_006923736.1| - 0.14 11.2 2.4 0.15 11.1 1.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2910) Transgly_assoc PF04226.8 gi|410671365|ref|YP_006923736.1| - 0.25 11.4 4.4 0.57 10.2 0.5 2.1 2 0 0 2 2 2 0 Transglycosylase associated protein CcmD PF04995.9 gi|410671365|ref|YP_006923736.1| - 6.6 6.5 6.6 3.5 7.4 1.0 2.1 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) UPF0047 PF01894.12 gi|410671366|ref|YP_006923737.1| - 7.3e-36 122.5 0.0 8.5e-36 122.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DUF1699 PF08004.6 gi|410671367|ref|YP_006923738.1| - 1.6e-62 208.8 0.3 1.8e-62 208.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) MRP-S22 PF10245.4 gi|410671367|ref|YP_006923738.1| - 0.083 12.2 0.0 0.093 12.1 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S22 ECF-ribofla_trS PF07155.7 gi|410671368|ref|YP_006923739.1| - 0.0041 16.8 5.5 0.0041 16.8 3.8 2.2 1 1 1 2 2 2 1 ECF-type riboflavin transporter, S component Phage_holin_5 PF06946.6 gi|410671368|ref|YP_006923739.1| - 0.057 13.5 2.4 7.2 6.8 0.1 2.4 2 0 0 2 2 2 0 Phage holin PgaD PF13994.1 gi|410671368|ref|YP_006923739.1| - 1.4 8.3 8.2 0.079 12.4 0.3 2.4 2 1 0 2 2 2 0 PgaD-like protein CbiA PF01656.18 gi|410671369|ref|YP_006923740.1| - 6.5e-22 77.8 0.1 7.9e-22 77.6 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|410671369|ref|YP_006923740.1| - 8.5e-13 48.5 0.0 7.9e-12 45.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|410671369|ref|YP_006923740.1| - 2.6e-07 29.9 0.1 1.9e-06 27.2 0.0 1.9 2 0 0 2 2 2 1 ATPase MipZ VirC1 PF07015.6 gi|410671369|ref|YP_006923740.1| - 0.00069 18.7 0.0 0.011 14.7 0.0 2.2 2 0 0 2 2 2 1 VirC1 protein ParA PF10609.4 gi|410671369|ref|YP_006923740.1| - 0.0088 15.9 0.5 0.018 14.8 0.1 1.7 1 1 0 1 1 1 1 ParA/MinD ATPase like YhjQ PF06564.7 gi|410671369|ref|YP_006923740.1| - 0.011 15.0 0.0 0.018 14.4 0.0 1.5 1 1 0 1 1 1 0 YhjQ protein AAA_25 PF13481.1 gi|410671369|ref|YP_006923740.1| - 0.019 14.3 0.3 0.039 13.3 0.2 1.7 1 1 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.10 gi|410671369|ref|YP_006923740.1| - 0.032 13.2 0.5 0.12 11.3 0.3 2.0 1 1 0 1 1 1 0 Anion-transporting ATPase AAA_17 PF13207.1 gi|410671369|ref|YP_006923740.1| - 0.033 15.0 0.1 0.17 12.7 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|410671369|ref|YP_006923740.1| - 0.035 13.8 0.1 0.1 12.3 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain Zot PF05707.7 gi|410671369|ref|YP_006923740.1| - 0.038 13.4 0.1 0.21 11.0 0.0 2.1 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) PhoH PF02562.11 gi|410671369|ref|YP_006923740.1| - 0.081 12.1 0.3 0.21 10.7 0.3 1.6 2 0 0 2 2 2 0 PhoH-like protein SRP54 PF00448.17 gi|410671369|ref|YP_006923740.1| - 0.091 12.1 0.2 1.2 8.5 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain TrmB PF01978.14 gi|410671370|ref|YP_006923741.1| - 9.6e-06 25.2 0.3 0.00015 21.3 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|410671370|ref|YP_006923741.1| - 0.016 14.8 0.0 0.046 13.3 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Radical_SAM PF04055.16 gi|410671371|ref|YP_006923742.1| - 1.2e-19 71.0 0.0 2.5e-19 70.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|410671371|ref|YP_006923742.1| - 1.8e-07 31.0 0.3 1.3e-06 28.3 0.1 2.6 3 0 0 3 3 3 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|410671371|ref|YP_006923742.1| - 0.083 13.0 0.0 0.25 11.4 0.0 1.9 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DNA_pol3_delta2 PF13177.1 gi|410671372|ref|YP_006923743.1| - 3.4e-13 49.5 0.0 4.9e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|410671372|ref|YP_006923743.1| - 1.5e-10 40.8 0.6 1.5e-10 40.8 0.4 1.6 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA PF00004.24 gi|410671372|ref|YP_006923743.1| - 1.2e-09 38.4 0.0 6.2e-09 36.1 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|410671372|ref|YP_006923743.1| - 3.6e-05 22.9 0.0 0.16 10.9 0.0 2.6 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|410671372|ref|YP_006923743.1| - 6.3e-05 21.8 0.0 0.014 14.0 0.0 2.8 2 1 1 3 3 3 1 TIP49 C-terminus AAA_22 PF13401.1 gi|410671372|ref|YP_006923743.1| - 0.0019 18.3 0.0 0.005 16.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain DNA_pol3_delta PF06144.8 gi|410671372|ref|YP_006923743.1| - 0.0022 17.5 0.0 0.0037 16.8 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_14 PF13173.1 gi|410671372|ref|YP_006923743.1| - 0.0038 17.1 0.0 0.014 15.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|410671372|ref|YP_006923743.1| - 0.036 13.4 0.0 0.17 11.2 0.0 2.1 1 1 0 1 1 1 0 AAA domain DUF3666 PF12408.3 gi|410671372|ref|YP_006923743.1| - 0.073 12.1 0.5 11 5.1 0.1 2.6 2 0 0 2 2 2 0 Ribose-5-phosphate isomerase AAA_16 PF13191.1 gi|410671372|ref|YP_006923743.1| - 0.081 12.9 0.0 0.5 10.3 0.0 2.3 1 1 0 1 1 1 0 AAA ATPase domain SecD_SecF PF02355.11 gi|410671373|ref|YP_006923744.1| - 1.2e-17 63.7 5.5 2.2e-17 62.8 3.8 1.3 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.10 gi|410671373|ref|YP_006923744.1| - 2.2e-07 29.8 10.5 2.2e-07 29.8 7.3 1.8 2 0 0 2 2 2 1 MMPL family Sec_GG PF07549.9 gi|410671373|ref|YP_006923744.1| - 5.5e-06 25.3 0.1 1.3e-05 24.1 0.1 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif SecD_SecF PF02355.11 gi|410671374|ref|YP_006923745.1| - 1.2e-38 132.1 17.8 1.2e-38 132.1 12.4 1.4 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|410671374|ref|YP_006923745.1| - 5.5e-05 22.1 0.1 0.00021 20.3 0.0 2.1 2 0 0 2 2 2 1 SecD/SecF GG Motif Patched PF02460.13 gi|410671374|ref|YP_006923745.1| - 0.41 8.5 18.0 0.57 8.0 12.5 1.1 1 0 0 1 1 1 0 Patched family dCMP_cyt_deam_1 PF00383.17 gi|410671375|ref|YP_006923746.1| - 1.1e-27 95.6 3.7 2e-27 94.8 2.6 1.4 1 1 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region APOBEC_N PF08210.6 gi|410671375|ref|YP_006923746.1| - 1.9e-05 24.3 0.5 2.5e-05 23.9 0.3 1.2 1 0 0 1 1 1 1 APOBEC-like N-terminal domain XOO_2897-deam PF14440.1 gi|410671375|ref|YP_006923746.1| - 0.00033 20.3 0.1 0.00036 20.2 0.1 1.2 1 0 0 1 1 1 1 Xanthomonas XOO_2897-like deaminase Bd3614-deam PF14439.1 gi|410671375|ref|YP_006923746.1| - 0.0027 17.5 1.3 0.0059 16.4 0.3 1.8 1 1 1 2 2 2 1 Bd3614-like deaminase MafB19-deam PF14437.1 gi|410671375|ref|YP_006923746.1| - 0.0034 17.0 2.1 0.0043 16.6 1.5 1.2 1 0 0 1 1 1 1 MafB19-like deaminase OTT_1508_deam PF14441.1 gi|410671375|ref|YP_006923746.1| - 0.1 12.3 1.0 0.13 12.0 0.7 1.2 1 0 0 1 1 1 0 OTT_1508-like deaminase zf-C3HC4 PF00097.20 gi|410671375|ref|YP_006923746.1| - 2.1 8.0 8.1 0.18 11.5 1.7 2.1 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) F420_ligase PF01996.11 gi|410671376|ref|YP_006923747.1| - 1.3e-63 214.1 1.2 1.5e-63 213.9 0.8 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase HSP20 PF00011.16 gi|410671377|ref|YP_006923748.1| - 1.5e-22 79.3 1.0 1.8e-22 79.1 0.7 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|410671377|ref|YP_006923748.1| - 1e-06 29.1 0.2 1.8e-06 28.3 0.1 1.4 1 0 0 1 1 1 1 CS domain DUF3971 PF13116.1 gi|410671377|ref|YP_006923748.1| - 0.036 13.4 0.1 0.054 12.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function PhosphMutase PF10143.4 gi|410671378|ref|YP_006923749.1| - 2.3e-57 193.3 0.0 3.6e-57 192.7 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|410671378|ref|YP_006923749.1| - 4e-46 157.4 0.0 4.7e-46 157.2 0.0 1.1 1 0 0 1 1 1 1 Metalloenzyme superfamily AA_kinase PF00696.23 gi|410671379|ref|YP_006923750.1| - 3.2e-48 164.3 1.6 4.8e-48 163.7 0.0 1.8 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|410671379|ref|YP_006923750.1| - 2.2e-26 91.1 4.1 1.8e-13 49.7 0.1 2.7 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|410671379|ref|YP_006923750.1| - 1.2e-24 85.2 1.9 1e-12 47.2 0.1 2.7 2 0 0 2 2 2 2 ACT domain LytR_C PF13399.1 gi|410671379|ref|YP_006923750.1| - 0.0009 19.5 0.0 2.2 8.7 0.0 2.6 1 1 1 2 2 2 2 LytR cell envelope-related transcriptional attenuator Hydrolase_6 PF13344.1 gi|410671379|ref|YP_006923750.1| - 0.006 16.4 0.1 5.8 6.8 0.0 3.6 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase ACT_6 PF13740.1 gi|410671379|ref|YP_006923750.1| - 0.022 14.4 0.7 0.37 10.5 0.1 2.6 2 0 0 2 2 2 0 ACT domain AIRS_C PF02769.17 gi|410671380|ref|YP_006923751.1| - 8.9e-16 58.2 0.0 2.6e-15 56.7 0.0 1.7 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|410671380|ref|YP_006923751.1| - 3.3e-14 52.8 0.1 7.4e-14 51.7 0.1 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain RRM_1 PF00076.17 gi|410671380|ref|YP_006923751.1| - 0.028 14.0 0.0 0.05 13.2 0.0 1.4 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) DUF1894 PF08979.6 gi|410671381|ref|YP_006923752.1| - 1.7e-27 95.2 0.0 1.9e-27 95.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) BPL_N PF09825.4 gi|410671382|ref|YP_006923753.1| - 0.00011 21.1 0.0 0.037 12.7 0.0 2.1 2 0 0 2 2 2 2 Biotin-protein ligase, N terminal MtrH PF02007.13 gi|410671383|ref|YP_006923754.1| - 1.7e-137 457.3 3.1 1.9e-137 457.1 2.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit TetR_N PF00440.18 gi|410671383|ref|YP_006923754.1| - 0.097 12.3 0.1 3.8 7.2 0.0 2.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family MtrG PF04210.8 gi|410671384|ref|YP_006923755.1| - 2.1e-30 104.1 0.3 2.6e-30 103.8 0.2 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G DUF4349 PF14257.1 gi|410671384|ref|YP_006923755.1| - 0.016 14.4 0.0 0.017 14.3 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) TIM PF00121.13 gi|410671384|ref|YP_006923755.1| - 0.06 12.3 0.0 0.074 12.1 0.0 1.1 1 0 0 1 1 1 0 Triosephosphate isomerase MtrF PF09472.5 gi|410671385|ref|YP_006923756.1| - 1e-28 98.3 0.4 1.2e-28 98.1 0.2 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) Phage_holin_4 PF05105.7 gi|410671385|ref|YP_006923756.1| - 0.076 12.6 0.1 0.087 12.5 0.1 1.2 1 0 0 1 1 1 0 Holin family MtrA PF04208.9 gi|410671386|ref|YP_006923757.1| - 9.6e-77 256.3 3.0 1.3e-76 255.9 2.1 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.5 gi|410671386|ref|YP_006923757.1| - 0.0071 15.5 0.4 0.021 14.0 0.3 1.9 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrB PF05440.7 gi|410671387|ref|YP_006923758.1| - 7.6e-34 115.6 0.1 8.5e-34 115.4 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B PRF PF06875.6 gi|410671387|ref|YP_006923758.1| - 0.054 12.6 0.1 0.069 12.3 0.0 1.1 1 0 0 1 1 1 0 Plethodontid receptivity factor PRF MtrC PF04211.8 gi|410671388|ref|YP_006923759.1| - 4.5e-82 275.0 36.4 1e-81 273.8 25.2 1.5 1 1 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C SID-1_RNA_chan PF13965.1 gi|410671388|ref|YP_006923759.1| - 0.054 11.6 2.6 0.079 11.1 1.8 1.3 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 MtrD PF04207.7 gi|410671389|ref|YP_006923760.1| - 5.5e-101 336.6 22.6 7.1e-101 336.2 15.7 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D SurE PF01975.12 gi|410671389|ref|YP_006923760.1| - 0.7 9.1 4.2 1.3 8.2 0.1 2.2 1 1 1 2 2 2 0 Survival protein SurE MtrE PF04206.7 gi|410671390|ref|YP_006923761.1| - 2.7e-127 423.4 13.6 3e-127 423.2 9.4 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E DUF3482 PF11981.3 gi|410671390|ref|YP_006923761.1| - 0.17 11.0 0.9 0.34 10.1 0.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) DUF2177 PF09945.4 gi|410671390|ref|YP_006923761.1| - 0.17 11.8 4.7 0.48 10.4 0.1 2.9 3 0 0 3 3 3 0 Predicted membrane protein (DUF2177) zf-C2H2_6 PF13912.1 gi|410671391|ref|YP_006923762.1| - 0.11 12.4 1.8 5.2 7.1 0.1 2.8 2 1 0 2 2 2 0 C2H2-type zinc finger Peptidase_U32 PF01136.14 gi|410671392|ref|YP_006923763.1| - 3.4e-21 75.2 0.0 9.5e-21 73.7 0.0 1.7 2 0 0 2 2 2 1 Peptidase family U32 Glyco_hydro_97 PF10566.4 gi|410671392|ref|YP_006923763.1| - 0.032 13.3 0.0 0.092 11.8 0.0 1.7 2 0 0 2 2 2 0 Glycoside hydrolase 97 AP_endonuc_2 PF01261.19 gi|410671393|ref|YP_006923764.1| - 2.2e-28 98.9 0.0 2.8e-28 98.6 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Usp PF00582.21 gi|410671394|ref|YP_006923765.1| - 1.1e-26 93.6 0.3 1.3e-26 93.4 0.2 1.1 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.11 gi|410671394|ref|YP_006923765.1| - 0.11 13.0 0.2 0.15 12.5 0.1 1.4 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Dpy19 PF10034.4 gi|410671395|ref|YP_006923766.1| - 0.061 11.4 0.4 0.14 10.2 0.1 1.6 1 1 1 2 2 2 0 Q-cell neuroblast polarisation SRP19 PF01922.12 gi|410671397|ref|YP_006923768.1| - 2.4e-13 50.4 0.0 2.7e-13 50.3 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein Sec61_beta PF03911.11 gi|410671398|ref|YP_006923769.1| - 3.6e-07 29.8 0.2 5.8e-07 29.2 0.1 1.3 1 0 0 1 1 1 1 Sec61beta family DUF2619 PF10942.3 gi|410671398|ref|YP_006923769.1| - 0.044 13.7 0.1 0.066 13.1 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2619) IF-2B PF01008.12 gi|410671399|ref|YP_006923770.1| - 3.6e-84 282.0 0.1 4.3e-84 281.8 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family MFS_1 PF07690.11 gi|410671400|ref|YP_006923771.1| - 8.2e-38 130.0 52.6 1.7e-37 128.9 32.0 2.5 2 1 0 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|410671400|ref|YP_006923771.1| - 6.5e-09 34.4 8.2 6.5e-09 34.4 5.7 2.5 2 1 1 3 3 3 1 Transmembrane secretion effector UPF0118 PF01594.11 gi|410671401|ref|YP_006923772.1| - 5.2e-42 143.9 43.1 6.4e-42 143.7 29.9 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF308 PF03729.8 gi|410671402|ref|YP_006923773.1| - 1.3e-13 50.7 46.3 2e-09 37.3 9.6 3.0 2 1 1 3 3 3 3 Short repeat of unknown function (DUF308) DUF308 PF03729.8 gi|410671404|ref|YP_006923775.1| - 4.9e-16 58.4 59.2 3.9e-12 45.9 15.5 3.0 2 1 1 3 3 3 3 Short repeat of unknown function (DUF308) DUF1269 PF06897.7 gi|410671405|ref|YP_006923776.1| - 5.4e-37 125.9 0.9 8e-37 125.3 0.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1269) Gly-zipper_OmpA PF13436.1 gi|410671405|ref|YP_006923776.1| - 0.00019 21.0 0.1 0.00029 20.4 0.1 1.3 1 0 0 1 1 1 1 Glycine-zipper containing OmpA-like membrane domain DUF456 PF04306.8 gi|410671405|ref|YP_006923776.1| - 0.0067 16.4 1.8 0.009 16.0 1.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF456) Gly-zipper_Omp PF13488.1 gi|410671405|ref|YP_006923776.1| - 0.0096 15.5 4.5 0.016 14.7 3.1 1.4 1 0 0 1 1 1 1 Glycine zipper DUF4203 PF13886.1 gi|410671405|ref|YP_006923776.1| - 0.021 14.3 1.3 0.025 14.0 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) Gly-zipper_YMGG PF13441.1 gi|410671405|ref|YP_006923776.1| - 0.043 13.3 7.2 0.71 9.4 0.1 2.2 2 0 0 2 2 2 0 YMGG-like Gly-zipper Bacteriocin_IIc PF10439.4 gi|410671405|ref|YP_006923776.1| - 2.4 8.3 10.2 8.2 6.6 7.1 1.9 1 1 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Rick_17kDa_Anti PF05433.10 gi|410671405|ref|YP_006923776.1| - 4.6 6.9 9.1 1.1 8.9 1.4 2.2 2 0 0 2 2 2 0 Glycine zipper 2TM domain Tub_2 PF04525.7 gi|410671406|ref|YP_006923777.1| - 6.5e-18 64.7 1.0 1e-17 64.1 0.7 1.3 1 0 0 1 1 1 1 Tubby C 2 HD PF01966.17 gi|410671407|ref|YP_006923778.1| - 3.6e-11 43.1 0.1 8e-11 42.0 0.0 1.7 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|410671407|ref|YP_006923778.1| - 0.11 11.8 0.0 0.23 10.7 0.0 1.5 1 0 0 1 1 1 0 HDOD domain Methyltransf_18 PF12847.2 gi|410671408|ref|YP_006923779.1| - 1.1e-13 51.7 0.0 1.6e-13 51.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|410671408|ref|YP_006923779.1| - 2.2e-12 46.8 0.0 3e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|410671408|ref|YP_006923779.1| - 2.7e-12 46.6 0.0 1.8e-10 40.7 0.0 2.1 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|410671408|ref|YP_006923779.1| - 8.8e-11 41.8 0.0 4.8e-10 39.4 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|410671408|ref|YP_006923779.1| - 8e-08 31.6 0.0 1.1e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|410671408|ref|YP_006923779.1| - 1.8e-07 31.5 0.0 4.5e-07 30.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|410671408|ref|YP_006923779.1| - 2.3e-06 26.9 0.0 3.5e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|410671408|ref|YP_006923779.1| - 2.7e-06 27.0 0.0 3.7e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|410671408|ref|YP_006923779.1| - 5.6e-06 25.8 0.0 1.2e-05 24.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|410671408|ref|YP_006923779.1| - 6.5e-06 25.4 0.0 9.2e-06 24.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_24 PF13578.1 gi|410671408|ref|YP_006923779.1| - 2.7e-05 24.9 0.0 6.9e-05 23.6 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|410671408|ref|YP_006923779.1| - 4.7e-05 23.7 0.1 0.00036 20.9 0.0 2.4 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|410671408|ref|YP_006923779.1| - 0.00013 22.2 0.0 0.00051 20.3 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|410671408|ref|YP_006923779.1| - 0.00076 19.2 0.0 0.002 17.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|410671408|ref|YP_006923779.1| - 0.011 15.1 0.3 0.71 9.2 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical protein 95 N6_N4_Mtase PF01555.13 gi|410671408|ref|YP_006923779.1| - 0.042 13.3 0.0 0.14 11.5 0.0 1.7 2 0 0 2 2 2 0 DNA methylase MetW PF07021.7 gi|410671408|ref|YP_006923779.1| - 0.068 12.5 0.1 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW tRNA_U5-meth_tr PF05958.6 gi|410671408|ref|YP_006923779.1| - 0.12 11.0 0.0 0.17 10.5 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Rad51 PF08423.6 gi|410671409|ref|YP_006923780.1| - 4e-26 91.4 0.1 4.6e-26 91.2 0.1 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|410671409|ref|YP_006923780.1| - 5.8e-11 42.1 0.0 7.8e-11 41.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|410671409|ref|YP_006923780.1| - 6.2e-11 41.8 0.6 1e-10 41.1 0.4 1.4 1 1 0 1 1 1 1 KaiC RecA PF00154.16 gi|410671409|ref|YP_006923780.1| - 1.5e-07 30.7 0.1 1.8e-07 30.5 0.1 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Zot PF05707.7 gi|410671409|ref|YP_006923780.1| - 5e-06 26.1 0.0 6.1e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) IstB_IS21 PF01695.12 gi|410671409|ref|YP_006923780.1| - 1.6e-05 24.3 0.1 0.00025 20.5 0.1 2.1 1 1 0 1 1 1 1 IstB-like ATP binding protein SRP54 PF00448.17 gi|410671409|ref|YP_006923780.1| - 4.8e-05 22.8 0.0 6.4e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Arch_ATPase PF01637.13 gi|410671409|ref|YP_006923780.1| - 9.1e-05 22.2 0.2 0.00012 21.9 0.1 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_31 PF13614.1 gi|410671409|ref|YP_006923780.1| - 0.00032 20.6 0.0 0.00052 19.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|410671409|ref|YP_006923780.1| - 0.00041 19.9 0.0 0.00056 19.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|410671409|ref|YP_006923780.1| - 0.00047 19.2 0.0 0.00052 19.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) MobB PF03205.9 gi|410671409|ref|YP_006923780.1| - 0.00054 19.6 0.1 0.0011 18.7 0.1 1.5 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CobU PF02283.11 gi|410671409|ref|YP_006923780.1| - 0.0006 19.2 0.0 0.0026 17.2 0.0 2.0 1 1 0 1 1 1 1 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_22 PF13401.1 gi|410671409|ref|YP_006923780.1| - 0.00073 19.6 0.0 0.0011 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain PhoH PF02562.11 gi|410671409|ref|YP_006923780.1| - 0.00077 18.7 0.0 0.002 17.4 0.0 1.7 2 0 0 2 2 2 1 PhoH-like protein CbiA PF01656.18 gi|410671409|ref|YP_006923780.1| - 0.00078 18.8 0.0 0.001 18.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.1 gi|410671409|ref|YP_006923780.1| - 0.0052 16.3 0.0 0.0072 15.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|410671409|ref|YP_006923780.1| - 0.0053 16.0 0.0 0.0079 15.4 0.0 1.4 1 1 0 1 1 1 1 Chromatin associated protein KTI12 AAA_10 PF12846.2 gi|410671409|ref|YP_006923780.1| - 0.0053 16.2 0.0 0.026 13.9 0.0 1.9 2 0 0 2 2 2 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|410671409|ref|YP_006923780.1| - 0.0073 14.9 0.0 0.01 14.4 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.12 gi|410671409|ref|YP_006923780.1| - 0.0083 15.9 0.1 0.044 13.5 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_14 PF13173.1 gi|410671409|ref|YP_006923780.1| - 0.012 15.5 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain MipZ PF09140.6 gi|410671409|ref|YP_006923780.1| - 0.016 14.2 0.0 0.022 13.8 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ DUF815 PF05673.8 gi|410671409|ref|YP_006923780.1| - 0.025 13.5 0.0 0.036 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_18 PF13238.1 gi|410671409|ref|YP_006923780.1| - 0.026 14.8 0.0 0.045 14.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|410671409|ref|YP_006923780.1| - 0.026 15.3 0.0 0.038 14.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|410671409|ref|YP_006923780.1| - 0.027 14.2 0.0 0.038 13.8 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit APS_kinase PF01583.15 gi|410671409|ref|YP_006923780.1| - 0.044 13.4 0.1 0.33 10.6 0.0 2.1 1 1 0 1 1 1 0 Adenylylsulphate kinase ATP_bind_1 PF03029.12 gi|410671409|ref|YP_006923780.1| - 0.044 13.3 0.1 0.082 12.4 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_19 PF13245.1 gi|410671409|ref|YP_006923780.1| - 0.047 13.4 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA PF00004.24 gi|410671409|ref|YP_006923780.1| - 0.055 13.6 0.1 0.074 13.2 0.1 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DEAD PF00270.24 gi|410671409|ref|YP_006923780.1| - 0.058 12.8 0.0 0.12 11.8 0.0 1.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_16 PF13191.1 gi|410671409|ref|YP_006923780.1| - 0.084 12.8 0.0 0.13 12.2 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.7 gi|410671409|ref|YP_006923780.1| - 0.13 11.9 0.1 0.25 10.9 0.0 1.5 1 1 0 1 1 1 0 NACHT domain ArsA_ATPase PF02374.10 gi|410671409|ref|YP_006923780.1| - 0.13 11.2 0.0 0.22 10.5 0.0 1.3 1 1 0 1 1 1 0 Anion-transporting ATPase RNA_helicase PF00910.17 gi|410671409|ref|YP_006923780.1| - 0.14 12.3 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Glutaredoxin PF00462.19 gi|410671410|ref|YP_006923781.1| - 8.9e-12 44.8 0.1 1.1e-11 44.5 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.9 gi|410671410|ref|YP_006923781.1| - 3.2e-05 24.1 0.0 3.4e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N_3 PF13417.1 gi|410671410|ref|YP_006923781.1| - 0.005 17.0 0.0 0.0069 16.5 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_3 PF13192.1 gi|410671410|ref|YP_006923781.1| - 0.031 14.0 0.2 0.053 13.3 0.2 1.5 1 1 0 1 1 1 0 Thioredoxin domain ArsC PF03960.10 gi|410671410|ref|YP_006923781.1| - 0.051 13.6 0.0 0.062 13.3 0.0 1.2 1 0 0 1 1 1 0 ArsC family MAF_flag10 PF01973.13 gi|410671410|ref|YP_006923781.1| - 0.11 12.0 0.0 0.12 11.9 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF115 DUF2007 PF09413.5 gi|410671410|ref|YP_006923781.1| - 0.14 11.9 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2007) Thioredoxin_2 PF13098.1 gi|410671410|ref|YP_006923781.1| - 0.14 12.3 0.2 0.14 12.3 0.2 1.3 1 1 0 1 1 1 0 Thioredoxin-like domain NRDD PF13597.1 gi|410671411|ref|YP_006923782.1| - 1e-152 509.0 0.0 1.3e-152 508.7 0.0 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Radical_SAM PF04055.16 gi|410671412|ref|YP_006923783.1| - 1.1e-07 32.1 0.0 1.5e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|410671412|ref|YP_006923783.1| - 3.6e-05 23.7 0.0 8.8e-05 22.5 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|410671412|ref|YP_006923783.1| - 0.00013 22.0 0.0 0.00019 21.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF4349 PF14257.1 gi|410671413|ref|YP_006923784.1| - 8.6e-67 225.1 0.5 1e-66 224.9 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) THOC7 PF05615.8 gi|410671413|ref|YP_006923784.1| - 0.06 13.6 0.7 0.11 12.7 0.5 1.4 1 0 0 1 1 1 0 Tho complex subunit 7 Spc7 PF08317.6 gi|410671413|ref|YP_006923784.1| - 0.11 11.1 0.5 0.19 10.3 0.3 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein AIRS PF00586.19 gi|410671414|ref|YP_006923785.1| - 1.3e-23 83.0 0.2 2.7e-23 81.9 0.2 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|410671414|ref|YP_006923785.1| - 9e-06 25.7 0.0 1.9e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain S-layer PF07752.6 gi|410671415|ref|YP_006923786.1| - 3.3e-162 537.7 30.4 8.1e-82 274.2 9.4 3.0 3 0 0 3 3 3 2 S-layer protein tRNA-synt_1c_C PF03950.13 gi|410671415|ref|YP_006923786.1| - 2.4e-05 24.0 0.5 0.27 10.9 0.0 3.2 2 1 1 3 3 3 2 tRNA synthetases class I (E and Q), anti-codon binding domain BiPBP_C PF06832.7 gi|410671415|ref|YP_006923786.1| - 0.0002 21.2 0.0 0.036 13.9 0.0 3.2 1 1 1 2 2 2 1 Penicillin-Binding Protein C-terminus Family PEGA PF08308.6 gi|410671415|ref|YP_006923786.1| - 0.0053 16.5 3.3 0.021 14.6 0.0 3.6 3 1 1 4 4 4 1 PEGA domain Myosin_N PF02736.14 gi|410671415|ref|YP_006923786.1| - 0.38 10.4 12.4 2.1 8.0 0.4 4.4 3 0 0 3 3 3 0 Myosin N-terminal SH3-like domain Cupredoxin_1 PF13473.1 gi|410671415|ref|YP_006923786.1| - 1.6 8.6 6.3 6.9 6.6 0.0 4.4 4 1 1 5 5 5 0 Cupredoxin-like domain YtkA PF13115.1 gi|410671415|ref|YP_006923786.1| - 3 8.2 14.2 16 5.8 0.2 6.4 6 2 0 6 6 6 0 YtkA-like HTH_3 PF01381.17 gi|410671416|ref|YP_006923787.1| - 5.7e-10 38.8 0.4 1.4e-09 37.6 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|410671416|ref|YP_006923787.1| - 4.3e-07 29.9 0.3 1.6e-06 28.0 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|410671416|ref|YP_006923787.1| - 0.0012 19.0 0.1 0.0028 17.8 0.1 1.7 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.1 gi|410671416|ref|YP_006923787.1| - 0.0042 17.2 0.0 0.0084 16.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|410671416|ref|YP_006923787.1| - 0.035 13.9 0.0 0.13 12.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_psq PF05225.11 gi|410671416|ref|YP_006923787.1| - 0.063 12.8 1.8 1.5 8.4 0.0 3.0 3 0 0 3 3 3 0 helix-turn-helix, Psq domain DUF2481 PF10654.4 gi|410671416|ref|YP_006923787.1| - 0.077 12.6 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) NMT1_2 PF13379.1 gi|410671417|ref|YP_006923788.1| - 1.8e-41 142.1 0.1 2.4e-41 141.8 0.1 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|410671417|ref|YP_006923788.1| - 1.2e-15 57.6 0.0 2e-15 56.9 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|410671417|ref|YP_006923788.1| - 1.1e-08 34.8 0.0 1.7e-08 34.1 0.0 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein LysR_substrate PF03466.15 gi|410671417|ref|YP_006923788.1| - 0.00099 18.2 0.3 0.2 10.7 0.0 2.8 2 1 1 3 3 3 2 LysR substrate binding domain SBP_bac_3 PF00497.15 gi|410671417|ref|YP_006923788.1| - 0.0072 15.5 0.0 0.023 13.9 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 SBP_bac_7 PF03480.8 gi|410671417|ref|YP_006923788.1| - 0.076 12.1 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 BPD_transp_1 PF00528.17 gi|410671418|ref|YP_006923789.1| - 2.8e-21 75.8 9.0 2.8e-21 75.8 6.2 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|410671419|ref|YP_006923790.1| - 8.7e-33 113.5 0.0 1.4e-32 112.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410671419|ref|YP_006923790.1| - 1.4e-10 41.5 0.0 0.00029 20.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|410671419|ref|YP_006923790.1| - 1.6e-06 27.4 0.0 0.00055 19.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|410671419|ref|YP_006923790.1| - 2.1e-06 27.9 0.2 0.017 15.2 0.0 2.4 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|410671419|ref|YP_006923790.1| - 4.3e-05 23.6 0.0 0.011 15.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|410671419|ref|YP_006923790.1| - 0.0002 21.3 0.2 0.0008 19.4 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|410671419|ref|YP_006923790.1| - 0.00042 20.0 0.0 0.0016 18.1 0.0 2.1 1 1 0 1 1 1 1 Archaeal ATPase AAA_28 PF13521.1 gi|410671419|ref|YP_006923790.1| - 0.0022 17.9 0.0 0.017 15.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|410671419|ref|YP_006923790.1| - 0.0022 18.8 0.4 0.0098 16.7 0.1 1.9 1 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|410671419|ref|YP_006923790.1| - 0.0031 16.7 0.0 0.0053 15.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|410671419|ref|YP_006923790.1| - 0.0034 16.6 0.0 1.1 8.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain PduV-EutP PF10662.4 gi|410671419|ref|YP_006923790.1| - 0.0039 16.6 0.0 0.02 14.4 0.0 2.1 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation AAA_23 PF13476.1 gi|410671419|ref|YP_006923790.1| - 0.0039 17.5 0.0 0.0099 16.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|410671419|ref|YP_006923790.1| - 0.0059 15.3 0.0 0.0087 14.7 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|410671419|ref|YP_006923790.1| - 0.007 16.2 0.2 0.034 14.0 0.1 2.3 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|410671419|ref|YP_006923790.1| - 0.015 13.9 0.1 0.44 9.0 0.0 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class NACHT PF05729.7 gi|410671419|ref|YP_006923790.1| - 0.015 14.9 0.1 0.085 12.5 0.0 2.1 2 1 0 2 2 2 0 NACHT domain AAA_29 PF13555.1 gi|410671419|ref|YP_006923790.1| - 0.016 14.7 0.0 0.032 13.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|410671419|ref|YP_006923790.1| - 0.026 14.8 0.1 0.1 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|410671419|ref|YP_006923790.1| - 0.041 13.6 0.0 0.15 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|410671419|ref|YP_006923790.1| - 0.045 13.1 0.0 0.34 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|410671419|ref|YP_006923790.1| - 0.053 12.3 0.0 0.12 11.1 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain SbcCD_C PF13558.1 gi|410671419|ref|YP_006923790.1| - 0.055 13.3 0.1 0.16 11.9 0.1 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|410671419|ref|YP_006923790.1| - 0.073 12.4 0.0 1.9 7.8 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain MobB PF03205.9 gi|410671419|ref|YP_006923790.1| - 0.097 12.3 0.1 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|410671419|ref|YP_006923790.1| - 0.098 12.0 0.0 0.21 10.9 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|410671419|ref|YP_006923790.1| - 0.16 12.1 0.0 0.64 10.2 0.0 2.0 2 0 0 2 2 2 0 RNA helicase Bactofilin PF04519.8 gi|410671420|ref|YP_006923791.1| - 7.5e-06 25.9 0.6 2e-05 24.5 0.2 1.8 1 1 1 2 2 2 1 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|410671420|ref|YP_006923791.1| - 0.0034 16.8 3.8 0.0055 16.1 0.5 3.0 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) PAS_9 PF13426.1 gi|410671421|ref|YP_006923792.1| - 3.5e-35 120.5 0.0 7.4e-11 42.3 0.0 4.2 4 0 0 4 4 4 3 PAS domain PAS PF00989.19 gi|410671421|ref|YP_006923792.1| - 1.4e-31 108.5 0.0 4.6e-12 45.7 0.0 4.0 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|410671421|ref|YP_006923792.1| - 5.5e-31 106.5 0.1 9.4e-31 105.8 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|410671421|ref|YP_006923792.1| - 8.6e-23 80.4 0.0 2e-08 34.2 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|410671421|ref|YP_006923792.1| - 7.4e-19 66.8 0.0 0.00014 21.5 0.0 3.7 3 0 0 3 3 3 3 PAS domain HisKA PF00512.20 gi|410671421|ref|YP_006923792.1| - 2.4e-14 53.0 0.1 5.9e-14 51.8 0.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|410671421|ref|YP_006923792.1| - 4.2e-07 29.9 0.0 1.1 9.3 0.0 4.1 3 1 0 3 3 3 3 PAS fold PAS_10 PF13596.1 gi|410671421|ref|YP_006923792.1| - 3.4e-06 27.2 0.0 0.095 12.9 0.0 3.3 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.6 gi|410671421|ref|YP_006923792.1| - 6.2e-06 26.2 0.0 0.13 12.4 0.0 3.3 3 1 0 3 3 3 2 PAS fold HATPase_c_5 PF14501.1 gi|410671421|ref|YP_006923792.1| - 0.00022 20.8 0.1 0.00057 19.5 0.1 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|410671421|ref|YP_006923792.1| - 0.00043 19.9 0.1 0.00079 19.0 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|410671421|ref|YP_006923792.1| - 0.014 15.1 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_11 PF14598.1 gi|410671421|ref|YP_006923792.1| - 0.022 14.6 0.0 0.14 12.0 0.0 2.2 2 0 0 2 2 2 0 PAS domain ParA PF10609.4 gi|410671423|ref|YP_006923794.1| - 3.2e-33 113.4 0.1 6.6e-33 112.4 0.1 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|410671423|ref|YP_006923794.1| - 1e-21 77.2 0.0 1.4e-21 76.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|410671423|ref|YP_006923794.1| - 8.6e-11 42.0 0.0 6.1e-09 35.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|410671423|ref|YP_006923794.1| - 1.1e-09 37.7 0.0 3.3e-09 36.2 0.0 1.6 1 1 1 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|410671423|ref|YP_006923794.1| - 1.6e-06 27.4 0.0 2.1e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|410671423|ref|YP_006923794.1| - 5e-06 25.8 0.1 0.0008 18.6 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|410671423|ref|YP_006923794.1| - 9.5e-05 21.8 0.0 0.00017 21.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|410671423|ref|YP_006923794.1| - 0.00012 21.7 0.4 0.073 12.6 0.1 2.2 2 0 0 2 2 2 2 AAA domain ArgK PF03308.11 gi|410671423|ref|YP_006923794.1| - 0.00016 20.5 0.1 0.00026 19.8 0.0 1.2 1 0 0 1 1 1 1 ArgK protein SRP54 PF00448.17 gi|410671423|ref|YP_006923794.1| - 0.0002 20.8 0.2 0.00038 19.9 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain APS_kinase PF01583.15 gi|410671423|ref|YP_006923794.1| - 0.00082 19.0 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_19 PF13245.1 gi|410671423|ref|YP_006923794.1| - 0.00087 18.9 1.6 0.0044 16.7 0.0 2.4 2 1 0 2 2 2 1 Part of AAA domain MobB PF03205.9 gi|410671423|ref|YP_006923794.1| - 0.0013 18.4 0.0 0.003 17.2 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|410671423|ref|YP_006923794.1| - 0.0017 17.5 0.0 0.0025 17.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 VirC1 PF07015.6 gi|410671423|ref|YP_006923794.1| - 0.0017 17.4 0.0 0.0034 16.5 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein AAA_10 PF12846.2 gi|410671423|ref|YP_006923794.1| - 0.0019 17.6 0.2 0.0029 17.1 0.0 1.5 2 0 0 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|410671423|ref|YP_006923794.1| - 0.0025 18.6 0.0 0.0047 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|410671423|ref|YP_006923794.1| - 0.014 15.5 0.0 0.059 13.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|410671423|ref|YP_006923794.1| - 0.017 15.3 0.0 0.031 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|410671423|ref|YP_006923794.1| - 0.019 14.6 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 NTPase KTI12 PF08433.5 gi|410671423|ref|YP_006923794.1| - 0.022 13.9 0.0 0.034 13.3 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 IstB_IS21 PF01695.12 gi|410671423|ref|YP_006923794.1| - 0.024 14.0 0.0 0.045 13.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|410671423|ref|YP_006923794.1| - 0.033 14.3 0.1 0.16 12.1 0.0 2.0 2 0 0 2 2 2 0 RNA helicase YhjQ PF06564.7 gi|410671423|ref|YP_006923794.1| - 0.044 13.1 0.2 2.1 7.6 0.1 2.1 2 0 0 2 2 2 0 YhjQ protein AAA_16 PF13191.1 gi|410671423|ref|YP_006923794.1| - 0.046 13.7 0.0 0.076 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Hydrolase_4 PF12146.3 gi|410671423|ref|YP_006923794.1| - 0.054 13.3 0.0 0.13 12.1 0.0 1.6 2 0 0 2 2 1 0 Putative lysophospholipase NB-ARC PF00931.17 gi|410671423|ref|YP_006923794.1| - 0.056 12.2 0.1 0.089 11.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.1 gi|410671423|ref|YP_006923794.1| - 0.072 12.6 0.4 0.14 11.7 0.1 1.6 2 0 0 2 2 1 0 AAA domain Zeta_toxin PF06414.7 gi|410671423|ref|YP_006923794.1| - 0.074 12.1 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.1 gi|410671423|ref|YP_006923794.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|410671423|ref|YP_006923794.1| - 0.16 11.5 0.2 0.34 10.5 0.2 1.5 1 0 0 1 1 1 0 NACHT domain DUF134 PF02001.11 gi|410671424|ref|YP_006923795.1| - 6.1e-21 74.3 0.1 7.1e-21 74.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_ECF PF07638.6 gi|410671424|ref|YP_006923795.1| - 0.0002 21.0 0.7 0.00021 21.0 0.5 1.0 1 0 0 1 1 1 1 ECF sigma factor Sigma70_r4_2 PF08281.7 gi|410671424|ref|YP_006923795.1| - 0.0014 18.0 0.1 0.0018 17.7 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.7 gi|410671424|ref|YP_006923795.1| - 0.014 14.9 0.1 0.029 13.9 0.0 1.6 2 0 0 2 2 2 0 HTH DNA binding domain Latrotoxin_C PF15658.1 gi|410671424|ref|YP_006923795.1| - 0.13 12.1 0.0 0.13 12.1 0.0 1.0 1 0 0 1 1 1 0 Latrotoxin C-terminal domain BacA PF02673.13 gi|410671425|ref|YP_006923796.1| - 8.6e-50 169.3 15.4 1.1e-49 169.0 10.6 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA DUF1622 PF07784.6 gi|410671427|ref|YP_006923798.1| - 1.4e-26 91.9 2.3 2e-26 91.4 1.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1622) Fe_dep_repr_C PF02742.10 gi|410671429|ref|YP_006923800.1| - 1.8e-11 43.5 0.0 2.9e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|410671429|ref|YP_006923800.1| - 9e-10 38.3 0.0 1.5e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|410671429|ref|YP_006923800.1| - 4.9e-06 26.1 0.0 1.5e-05 24.5 0.0 1.7 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|410671429|ref|YP_006923800.1| - 0.0029 17.2 0.0 0.0048 16.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|410671429|ref|YP_006923800.1| - 0.0046 16.7 0.0 0.022 14.5 0.0 1.9 1 1 1 2 2 2 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|410671429|ref|YP_006923800.1| - 0.0048 17.1 0.0 0.0072 16.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|410671429|ref|YP_006923800.1| - 0.03 14.0 0.1 0.2 11.3 0.0 2.2 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|410671429|ref|YP_006923800.1| - 0.091 12.3 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|410671429|ref|YP_006923800.1| - 0.097 12.1 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit Rrf2 PF02082.15 gi|410671429|ref|YP_006923800.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Rio2_N PF09202.6 gi|410671429|ref|YP_006923800.1| - 0.12 12.4 0.0 0.34 10.9 0.0 1.7 2 0 0 2 2 2 0 Rio2, N-terminal TroA PF01297.12 gi|410671430|ref|YP_006923801.1| - 4.3e-69 232.6 2.4 5e-69 232.3 1.7 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family AIRC PF00731.15 gi|410671430|ref|YP_006923801.1| - 0.014 14.6 0.3 0.13 11.5 0.0 2.1 2 0 0 2 2 2 0 AIR carboxylase APOBEC_C PF05240.9 gi|410671430|ref|YP_006923801.1| - 0.11 11.9 0.0 0.32 10.4 0.0 1.8 2 0 0 2 2 2 0 APOBEC-like C-terminal domain DUF2796 PF10986.3 gi|410671430|ref|YP_006923801.1| - 0.89 9.5 10.1 1.6 8.6 7.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2796) ABC_tran PF00005.22 gi|410671431|ref|YP_006923802.1| - 1.7e-28 99.6 0.0 2.4e-28 99.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410671431|ref|YP_006923802.1| - 1.1e-16 61.6 0.0 4.5e-08 33.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|410671431|ref|YP_006923802.1| - 3.6e-07 29.6 0.0 9.2e-07 28.3 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|410671431|ref|YP_006923802.1| - 7.9e-05 21.8 0.0 0.083 11.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.1 gi|410671431|ref|YP_006923802.1| - 0.0015 18.4 0.3 0.07 13.0 0.0 2.5 2 1 0 2 2 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|410671431|ref|YP_006923802.1| - 0.0018 18.6 0.4 0.0028 18.0 0.3 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|410671431|ref|YP_006923802.1| - 0.0024 17.3 0.0 0.0043 16.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|410671431|ref|YP_006923802.1| - 0.0033 17.5 0.1 0.22 11.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|410671431|ref|YP_006923802.1| - 0.0053 16.2 0.1 1.6 8.0 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_30 PF13604.1 gi|410671431|ref|YP_006923802.1| - 0.013 15.0 0.0 0.065 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|410671431|ref|YP_006923802.1| - 0.018 14.4 0.0 0.055 12.8 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain MMR_HSR1 PF01926.18 gi|410671431|ref|YP_006923802.1| - 0.019 14.9 0.0 0.066 13.1 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase T2SE PF00437.15 gi|410671431|ref|YP_006923802.1| - 0.033 13.0 0.0 0.052 12.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF258 PF03193.11 gi|410671431|ref|YP_006923802.1| - 0.044 12.9 0.0 0.078 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|410671431|ref|YP_006923802.1| - 0.056 13.1 0.2 0.18 11.4 0.1 1.8 2 0 0 2 2 2 0 NACHT domain Arch_ATPase PF01637.13 gi|410671431|ref|YP_006923802.1| - 0.059 13.0 0.1 0.21 11.2 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase MutS_V PF00488.16 gi|410671431|ref|YP_006923802.1| - 0.061 12.7 0.0 0.12 11.7 0.0 1.5 2 0 0 2 2 2 0 MutS domain V AAA_16 PF13191.1 gi|410671431|ref|YP_006923802.1| - 0.081 12.9 0.1 0.24 11.3 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|410671431|ref|YP_006923802.1| - 0.087 12.7 0.0 4.1 7.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|410671431|ref|YP_006923802.1| - 0.098 12.4 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|410671431|ref|YP_006923802.1| - 0.12 12.2 0.1 1.3 8.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.18 gi|410671431|ref|YP_006923802.1| - 0.14 11.9 0.1 14 5.4 0.0 2.1 2 0 0 2 2 2 0 Dynamin family AAA_17 PF13207.1 gi|410671431|ref|YP_006923802.1| - 0.17 12.7 1.4 0.74 10.6 1.0 2.1 1 1 0 1 1 1 0 AAA domain ABC-3 PF00950.12 gi|410671432|ref|YP_006923803.1| - 1e-83 280.6 29.1 1.2e-83 280.4 20.2 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|410671432|ref|YP_006923803.1| - 5.2e-13 48.4 26.3 1e-12 47.5 18.2 1.5 1 1 0 1 1 1 1 FecCD transport family TctB PF07331.6 gi|410671432|ref|YP_006923803.1| - 0.0022 17.6 22.3 0.05 13.2 4.1 2.8 1 1 1 2 2 2 2 Tripartite tricarboxylate transporter TctB family TfuA PF07812.7 gi|410671433|ref|YP_006923804.1| - 6.5e-46 154.6 0.4 1.3e-45 153.6 0.1 1.7 2 0 0 2 2 2 1 TfuA-like protein YcaO PF02624.11 gi|410671434|ref|YP_006923805.1| - 8.5e-81 272.0 0.2 1.2e-80 271.5 0.2 1.2 1 0 0 1 1 1 1 YcaO-like family Aminotran_5 PF00266.14 gi|410671437|ref|YP_006923808.1| - 1.1e-117 392.9 0.0 1.3e-117 392.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|410671437|ref|YP_006923808.1| - 1.1e-07 31.2 0.2 1.7e-07 30.5 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|410671437|ref|YP_006923808.1| - 0.0015 16.8 0.0 0.002 16.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme AAA_16 PF13191.1 gi|410671438|ref|YP_006923809.1| - 7.5e-14 52.1 0.0 1.5e-12 47.9 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|410671438|ref|YP_006923809.1| - 7.5e-09 35.8 0.0 1.8e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|410671438|ref|YP_006923809.1| - 5.1e-08 33.1 0.0 1.2e-07 31.9 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.6 gi|410671438|ref|YP_006923809.1| - 2.3e-07 30.4 0.1 1e-06 28.3 0.0 2.2 2 0 0 2 2 1 1 CDC6, C terminal Arch_ATPase PF01637.13 gi|410671438|ref|YP_006923809.1| - 2.9e-07 30.4 0.0 4.8e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_11 PF13086.1 gi|410671438|ref|YP_006923809.1| - 6.9e-06 25.7 0.0 1.5e-05 24.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|410671438|ref|YP_006923809.1| - 8.8e-06 24.7 0.0 1.3e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_19 PF13245.1 gi|410671438|ref|YP_006923809.1| - 1.3e-05 24.8 0.1 0.00059 19.5 0.0 2.6 2 0 0 2 2 2 1 Part of AAA domain NACHT PF05729.7 gi|410671438|ref|YP_006923809.1| - 2.9e-05 23.7 0.0 6e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain T2SE PF00437.15 gi|410671438|ref|YP_006923809.1| - 0.00048 19.1 0.0 0.00095 18.1 0.0 1.5 1 1 1 2 2 2 1 Type II/IV secretion system protein AAA_14 PF13173.1 gi|410671438|ref|YP_006923809.1| - 0.0012 18.7 0.1 0.017 15.0 0.0 2.2 1 1 1 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|410671438|ref|YP_006923809.1| - 0.0017 17.3 0.0 0.0022 17.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) KAP_NTPase PF07693.9 gi|410671438|ref|YP_006923809.1| - 0.0019 17.2 0.0 0.0074 15.3 0.0 1.7 1 1 1 2 2 2 1 KAP family P-loop domain AAA_35 PF14516.1 gi|410671438|ref|YP_006923809.1| - 0.0023 16.6 0.1 0.11 11.0 0.1 2.1 1 1 0 1 1 1 1 AAA-like domain NTPase_1 PF03266.10 gi|410671438|ref|YP_006923809.1| - 0.0025 17.5 0.2 0.0063 16.2 0.0 1.7 2 0 0 2 2 2 1 NTPase Sigma54_activat PF00158.21 gi|410671438|ref|YP_006923809.1| - 0.0026 17.2 0.0 0.0041 16.5 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|410671438|ref|YP_006923809.1| - 0.0087 15.1 0.0 0.016 14.2 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Viral_helicase1 PF01443.13 gi|410671438|ref|YP_006923809.1| - 0.012 15.1 0.0 0.021 14.3 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase IstB_IS21 PF01695.12 gi|410671438|ref|YP_006923809.1| - 0.014 14.7 0.6 2.8 7.3 0.1 2.4 2 1 0 2 2 2 0 IstB-like ATP binding protein AAA_32 PF13654.1 gi|410671438|ref|YP_006923809.1| - 0.015 13.9 0.0 0.12 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|410671438|ref|YP_006923809.1| - 0.016 14.2 0.0 0.027 13.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.1 gi|410671438|ref|YP_006923809.1| - 0.018 15.8 0.0 0.044 14.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.8 gi|410671438|ref|YP_006923809.1| - 0.024 13.5 0.0 0.08 11.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_30 PF13604.1 gi|410671438|ref|YP_006923809.1| - 0.028 14.0 0.0 0.057 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|410671438|ref|YP_006923809.1| - 0.04 12.5 0.0 0.063 11.8 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_33 PF13671.1 gi|410671438|ref|YP_006923809.1| - 0.051 13.4 0.0 0.094 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|410671438|ref|YP_006923809.1| - 0.051 13.3 0.0 0.12 12.0 0.0 1.8 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) SRP54 PF00448.17 gi|410671438|ref|YP_006923809.1| - 0.051 13.0 0.0 0.072 12.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.17 gi|410671438|ref|YP_006923809.1| - 0.054 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase KaiC PF06745.8 gi|410671438|ref|YP_006923809.1| - 0.065 12.3 0.3 0.65 9.0 0.1 2.5 2 1 0 2 2 2 0 KaiC AAA_25 PF13481.1 gi|410671438|ref|YP_006923809.1| - 0.086 12.2 0.2 1.1 8.6 0.2 2.2 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|410671438|ref|YP_006923809.1| - 0.087 12.2 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|410671438|ref|YP_006923809.1| - 0.097 12.3 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF4145 PF13643.1 gi|410671438|ref|YP_006923809.1| - 0.13 12.1 0.0 0.37 10.6 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4145) Miro PF08477.8 gi|410671438|ref|YP_006923809.1| - 0.14 12.7 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein DUF45 PF01863.12 gi|410671439|ref|YP_006923810.1| - 1.6e-54 184.8 0.5 1.9e-54 184.6 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.5 gi|410671439|ref|YP_006923810.1| - 4.7e-05 23.3 0.4 0.0001 22.2 0.3 1.5 1 0 0 1 1 1 1 WLM domain SprT-like PF10263.4 gi|410671439|ref|YP_006923810.1| - 0.00097 18.8 0.0 0.0017 18.0 0.0 1.5 1 0 0 1 1 1 1 SprT-like family Peptidase_M56 PF05569.6 gi|410671439|ref|YP_006923810.1| - 0.031 13.2 0.2 0.052 12.5 0.2 1.3 1 0 0 1 1 1 0 BlaR1 peptidase M56 HSDR_N PF04313.9 gi|410671440|ref|YP_006923811.1| - 8.2e-36 123.5 1.1 8.2e-36 123.5 0.8 2.5 2 1 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.10 gi|410671440|ref|YP_006923811.1| - 8.4e-17 61.5 0.2 8.4e-16 58.3 0.0 2.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HSDR_N_2 PF13588.1 gi|410671440|ref|YP_006923811.1| - 2.4e-05 24.0 0.0 8.4e-05 22.3 0.0 2.0 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) MutS_III PF05192.13 gi|410671440|ref|YP_006923811.1| - 0.023 14.4 0.0 4.9 6.8 0.0 3.0 2 1 0 3 3 3 0 MutS domain III Methylase_S PF01420.14 gi|410671442|ref|YP_006923813.1| - 4.3e-31 108.1 4.1 2e-18 66.9 0.0 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain DbpA PF03880.10 gi|410671442|ref|YP_006923813.1| - 0.055 13.1 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 DbpA RNA binding domain HD_5 PF13487.1 gi|410671443|ref|YP_006923814.1| - 0.095 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 HD domain DUF1016 PF06250.6 gi|410671444|ref|YP_006923815.1| - 2.4e-109 365.1 3.2 2.9e-109 364.9 2.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1016) tRNA_bind_2 PF13725.1 gi|410671444|ref|YP_006923815.1| - 0.007 16.4 0.0 0.014 15.4 0.0 1.6 1 0 0 1 1 1 1 Possible tRNA binding domain N6_Mtase PF02384.11 gi|410671445|ref|YP_006923816.1| - 3.3e-104 348.3 0.0 1.6e-103 346.0 0.0 2.0 3 0 0 3 3 3 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|410671445|ref|YP_006923816.1| - 3.2e-25 89.1 0.6 3.2e-25 89.1 0.4 2.2 2 1 0 2 2 2 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|410671445|ref|YP_006923816.1| - 3.2e-11 43.3 0.0 6.1e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|410671445|ref|YP_006923816.1| - 1.4e-07 31.2 0.0 3e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Eco57I PF07669.6 gi|410671445|ref|YP_006923816.1| - 5.9e-06 26.5 0.0 2.5e-05 24.5 0.0 2.1 2 1 0 2 2 2 1 Eco57I restriction-modification methylase MTS PF05175.9 gi|410671445|ref|YP_006923816.1| - 0.00011 21.6 0.0 0.00026 20.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase small domain IncA PF04156.9 gi|410671445|ref|YP_006923816.1| - 0.054 13.0 0.1 0.099 12.2 0.1 1.5 1 0 0 1 1 1 0 IncA protein Methyltransf_18 PF12847.2 gi|410671445|ref|YP_006923816.1| - 0.11 13.1 0.1 0.41 11.2 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain DUF1319 PF07028.6 gi|410671445|ref|YP_006923816.1| - 0.25 11.5 2.7 11 6.2 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1319) Methylase_S PF01420.14 gi|410671446|ref|YP_006923817.1| - 8.5e-07 29.1 0.0 1.3e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain Cpn60_TCP1 PF00118.19 gi|410671448|ref|YP_006923819.1| - 1.5e-170 568.0 19.3 1.7e-170 567.8 13.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family OmpA PF00691.15 gi|410671448|ref|YP_006923819.1| - 0.7 10.3 3.3 0.8 10.1 0.3 2.5 3 0 0 3 3 3 0 OmpA family EIF_2_alpha PF07541.7 gi|410671448|ref|YP_006923819.1| - 8.8 6.0 8.2 22 4.8 0.2 3.4 2 1 0 3 3 3 0 Eukaryotic translation initiation factor 2 alpha subunit CxxCxxCC PF03692.10 gi|410671450|ref|YP_006923821.1| - 2e-11 44.1 1.6 2e-11 44.1 1.1 1.8 2 0 0 2 2 2 1 Putative zinc- or iron-chelating domain Radical_SAM PF04055.16 gi|410671451|ref|YP_006923822.1| - 3.6e-26 92.3 0.1 1.2e-25 90.6 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|410671451|ref|YP_006923822.1| - 9.4e-09 35.1 0.0 1.8e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain PyrI_C PF02748.10 gi|410671451|ref|YP_006923822.1| - 0.12 11.8 0.3 7.8 6.0 0.2 2.4 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF126 PF01989.11 gi|410671452|ref|YP_006923823.1| - 3.5e-36 122.7 0.1 5.1e-36 122.2 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF126 DUF521 PF04412.8 gi|410671453|ref|YP_006923824.1| - 8.9e-149 495.3 0.3 1e-148 495.2 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) UbiD PF01977.11 gi|410671454|ref|YP_006923825.1| - 1.7e-128 428.6 4.5 1.9e-128 428.4 3.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase SGL PF08450.7 gi|410671454|ref|YP_006923825.1| - 0.11 11.8 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 SMP-30/Gluconolaconase/LRE-like region DUF4250 PF14056.1 gi|410671454|ref|YP_006923825.1| - 0.14 11.8 0.0 0.34 10.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) ABC_tran PF00005.22 gi|410671455|ref|YP_006923826.1| - 6.4e-23 81.5 0.0 1e-22 80.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410671455|ref|YP_006923826.1| - 1.3e-08 35.1 3.1 2.1e-07 31.2 2.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|410671455|ref|YP_006923826.1| - 1.3e-07 31.3 0.0 0.009 15.4 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|410671455|ref|YP_006923826.1| - 0.00031 20.2 0.0 0.00073 19.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|410671455|ref|YP_006923826.1| - 0.00065 19.8 0.1 0.0049 16.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|410671455|ref|YP_006923826.1| - 0.00069 18.9 0.5 0.0031 16.7 0.2 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|410671455|ref|YP_006923826.1| - 0.0018 18.3 0.0 0.0057 16.6 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|410671455|ref|YP_006923826.1| - 0.0026 16.9 0.0 0.0041 16.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|410671455|ref|YP_006923826.1| - 0.0059 16.9 0.5 0.0095 16.2 0.3 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|410671455|ref|YP_006923826.1| - 0.0078 15.3 0.5 0.87 8.5 0.1 2.1 1 1 1 2 2 2 1 AAA ATPase domain DUF815 PF05673.8 gi|410671455|ref|YP_006923826.1| - 0.0084 15.0 0.0 0.013 14.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) MMR_HSR1 PF01926.18 gi|410671455|ref|YP_006923826.1| - 0.018 14.9 0.1 0.032 14.1 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|410671455|ref|YP_006923826.1| - 0.02 15.7 0.5 0.048 14.4 0.4 2.0 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|410671455|ref|YP_006923826.1| - 0.023 15.1 0.0 0.065 13.7 0.0 1.7 2 0 0 2 2 2 0 Miro-like protein IstB_IS21 PF01695.12 gi|410671455|ref|YP_006923826.1| - 0.035 13.5 0.2 0.21 10.9 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.1 gi|410671455|ref|YP_006923826.1| - 0.046 13.3 0.0 3.9 6.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|410671455|ref|YP_006923826.1| - 0.055 12.9 0.0 0.099 12.1 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA PF00004.24 gi|410671455|ref|YP_006923826.1| - 0.08 13.1 0.0 0.19 11.9 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|410671455|ref|YP_006923826.1| - 0.14 10.8 0.0 0.23 10.2 0.0 1.3 1 0 0 1 1 1 0 ArgK protein DUF389 PF04087.9 gi|410671456|ref|YP_006923827.1| - 9e-37 126.1 21.7 9e-37 126.1 15.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF389) HATPase_c PF02518.21 gi|410671457|ref|YP_006923828.1| - 6.9e-32 109.4 0.1 1.8e-31 108.1 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|410671457|ref|YP_006923828.1| - 1.7e-27 95.8 0.1 4e-10 39.9 0.1 3.4 3 0 0 3 3 3 3 PAS domain PAS_8 PF13188.1 gi|410671457|ref|YP_006923828.1| - 9.3e-21 72.9 0.0 7.9e-10 38.2 0.0 3.6 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|410671457|ref|YP_006923828.1| - 2.6e-20 72.2 0.0 4.7e-11 42.4 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|410671457|ref|YP_006923828.1| - 4.5e-19 68.3 0.0 1.2e-07 31.6 0.0 3.4 3 0 0 3 3 3 2 PAS fold HisKA PF00512.20 gi|410671457|ref|YP_006923828.1| - 1.3e-18 66.7 0.0 4.9e-18 64.8 0.0 2.1 2 0 0 2 2 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|410671457|ref|YP_006923828.1| - 1.1e-13 51.1 0.0 2.4e-06 27.5 0.0 2.9 3 0 0 3 3 3 2 PAS fold GAF_3 PF13492.1 gi|410671457|ref|YP_006923828.1| - 3.6e-07 30.3 0.0 7.7e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_11 PF14598.1 gi|410671457|ref|YP_006923828.1| - 2.5e-05 24.2 0.0 0.032 14.1 0.0 3.7 4 0 0 4 4 4 1 PAS domain HATPase_c_5 PF14501.1 gi|410671457|ref|YP_006923828.1| - 0.00061 19.4 0.1 0.0024 17.5 0.1 2.1 1 0 0 1 1 1 1 GHKL domain GAF PF01590.21 gi|410671457|ref|YP_006923828.1| - 0.027 14.6 0.0 0.055 13.5 0.0 1.6 1 0 0 1 1 1 0 GAF domain HATPase_c_3 PF13589.1 gi|410671457|ref|YP_006923828.1| - 0.035 13.7 0.1 0.085 12.5 0.1 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|410671457|ref|YP_006923828.1| - 0.048 13.4 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain GAF_2 PF13185.1 gi|410671457|ref|YP_006923828.1| - 0.097 13.1 0.0 0.19 12.2 0.0 1.5 1 0 0 1 1 1 0 GAF domain DUF3994 PF13159.1 gi|410671458|ref|YP_006923829.1| - 0.038 14.2 0.3 0.062 13.5 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3994) Acetyltransf_1 PF00583.19 gi|410671459|ref|YP_006923830.1| - 3.6e-10 39.7 0.0 5e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|410671459|ref|YP_006923830.1| - 1.5e-09 37.8 0.0 2.4e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|410671459|ref|YP_006923830.1| - 5.1e-06 26.1 0.0 7.9e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|410671459|ref|YP_006923830.1| - 6.6e-05 23.0 0.1 0.00014 21.9 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|410671459|ref|YP_006923830.1| - 0.001 18.9 0.0 0.0031 17.3 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|410671459|ref|YP_006923830.1| - 0.0092 15.9 0.5 1.4 8.8 0.0 2.1 1 1 1 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|410671459|ref|YP_006923830.1| - 0.014 15.3 0.0 0.017 14.9 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|410671459|ref|YP_006923830.1| - 0.025 14.7 0.0 0.037 14.1 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain zinc_ribbon_6 PF14599.1 gi|410671460|ref|YP_006923831.1| - 0.0019 17.9 2.3 0.092 12.5 0.1 2.1 1 1 1 2 2 2 2 Zinc-ribbon LIM PF00412.17 gi|410671460|ref|YP_006923831.1| - 0.022 14.8 1.7 0.028 14.4 1.2 1.1 1 0 0 1 1 1 0 LIM domain DZR PF12773.2 gi|410671460|ref|YP_006923831.1| - 0.12 12.2 1.4 0.16 11.7 1.0 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-trcl PF13451.1 gi|410671460|ref|YP_006923831.1| - 5.9 6.6 7.2 14 5.4 0.3 2.2 1 1 0 2 2 2 0 Probable zinc-binding domain zinc_ribbon_2 PF13240.1 gi|410671461|ref|YP_006923832.1| - 0.022 14.2 0.6 0.82 9.2 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|410671461|ref|YP_006923832.1| - 0.046 12.9 1.8 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|410671461|ref|YP_006923832.1| - 0.094 12.4 3.1 1.6 8.5 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|410671461|ref|YP_006923832.1| - 0.098 12.3 0.6 0.098 12.3 0.4 2.3 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_4 PF13717.1 gi|410671461|ref|YP_006923832.1| - 0.099 12.3 4.0 6.8 6.4 0.0 2.8 2 1 0 2 2 2 0 zinc-ribbon domain TerY-C PF15616.1 gi|410671461|ref|YP_006923832.1| - 0.1 12.5 2.4 0.21 11.4 1.7 1.6 1 1 0 1 1 1 0 TerY-C metal binding domain DNA_ligase_ZBD PF03119.11 gi|410671461|ref|YP_006923832.1| - 0.15 11.7 1.5 0.2 11.3 0.2 1.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.2 gi|410671461|ref|YP_006923832.1| - 0.18 11.6 3.7 0.54 10.1 2.6 1.8 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_5 PF13719.1 gi|410671461|ref|YP_006923832.1| - 0.19 11.3 4.9 6.4 6.4 0.0 2.8 2 1 0 2 2 2 0 zinc-ribbon domain DUF2321 PF10083.4 gi|410671461|ref|YP_006923832.1| - 0.22 10.9 1.2 0.24 10.8 0.8 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) GFA PF04828.9 gi|410671461|ref|YP_006923832.1| - 0.62 10.0 0.1 0.62 10.0 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-RING_3 PF14369.1 gi|410671461|ref|YP_006923832.1| - 0.78 9.7 3.9 14 5.8 0.3 2.5 1 1 1 2 2 2 0 zinc-finger zf-C2H2_6 PF13912.1 gi|410671461|ref|YP_006923832.1| - 3.7 7.5 5.9 14 5.7 2.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger DUF2196 PF09962.4 gi|410671462|ref|YP_006923833.1| - 2.5e-30 104.0 4.5 2.8e-30 103.8 3.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) Pyr_redox_2 PF07992.9 gi|410671464|ref|YP_006923835.1| - 5.6e-28 98.2 0.2 1.2e-27 97.1 0.2 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|410671464|ref|YP_006923835.1| - 3e-20 72.2 0.0 5.6e-20 71.4 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|410671464|ref|YP_006923835.1| - 5.8e-20 71.4 1.1 6.6e-17 61.6 0.1 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|410671464|ref|YP_006923835.1| - 8.3e-10 39.0 0.1 0.00024 21.2 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|410671464|ref|YP_006923835.1| - 1e-07 31.1 4.6 0.0012 17.8 0.3 3.4 3 0 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|410671464|ref|YP_006923835.1| - 7.5e-06 25.8 3.0 0.00027 20.9 0.2 2.7 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|410671464|ref|YP_006923835.1| - 0.00018 20.4 0.4 0.0053 15.6 0.1 2.3 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.13 gi|410671464|ref|YP_006923835.1| - 0.00029 20.5 0.4 0.47 10.0 0.1 2.7 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.17 gi|410671464|ref|YP_006923835.1| - 0.0015 17.5 1.8 0.0084 15.0 0.9 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|410671464|ref|YP_006923835.1| - 0.0017 16.8 4.8 0.21 10.0 0.3 2.8 2 1 1 3 3 3 2 HI0933-like protein ApbA PF02558.11 gi|410671464|ref|YP_006923835.1| - 0.0066 15.9 0.9 0.12 11.8 0.2 2.3 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA GDI PF00996.13 gi|410671464|ref|YP_006923835.1| - 0.024 12.9 0.1 0.14 10.4 0.0 1.9 2 0 0 2 2 2 0 GDP dissociation inhibitor Thi4 PF01946.12 gi|410671464|ref|YP_006923835.1| - 0.03 13.4 0.2 0.15 11.1 0.1 2.0 2 0 0 2 2 2 0 Thi4 family 2-Hacid_dh_C PF02826.14 gi|410671464|ref|YP_006923835.1| - 0.042 13.0 0.1 0.22 10.6 0.1 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|410671464|ref|YP_006923835.1| - 0.073 12.1 0.0 5.2 6.0 0.0 2.3 2 0 0 2 2 2 0 FAD binding domain THF_DHG_CYH_C PF02882.14 gi|410671464|ref|YP_006923835.1| - 0.1 11.6 0.0 0.21 10.6 0.0 1.5 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AlaDh_PNT_C PF01262.16 gi|410671464|ref|YP_006923835.1| - 0.11 12.0 0.3 1.9 8.0 0.0 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Defensin_beta PF00711.14 gi|410671464|ref|YP_006923835.1| - 0.24 11.3 0.2 0.24 11.3 0.1 1.7 2 0 0 2 2 2 0 Beta defensin zinc_ribbon_6 PF14599.1 gi|410671465|ref|YP_006923836.1| - 0.011 15.4 0.7 0.019 14.7 0.5 1.4 1 1 0 1 1 1 0 Zinc-ribbon LIM PF00412.17 gi|410671465|ref|YP_006923836.1| - 0.069 13.2 1.1 0.089 12.8 0.7 1.2 1 0 0 1 1 1 0 LIM domain Gly-rich_Ago1 PF12764.2 gi|410671465|ref|YP_006923836.1| - 0.085 13.5 0.7 0.1 13.2 0.5 1.1 1 0 0 1 1 1 0 Glycine-rich region of argonaut DNA_RNApol_7kD PF03604.8 gi|410671465|ref|YP_006923836.1| - 0.22 11.0 2.7 0.67 9.4 1.9 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF390 PF04094.9 gi|410671465|ref|YP_006923836.1| - 4.6 5.1 5.3 4.6 5.1 3.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF390) DUF86 PF01934.12 gi|410671466|ref|YP_006923837.1| - 9.5e-27 93.0 0.1 1.1e-26 92.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|410671467|ref|YP_006923838.1| - 5.7e-13 49.0 0.1 6.3e-13 48.8 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|410671467|ref|YP_006923838.1| - 0.017 15.1 0.0 0.02 14.9 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase beta palm DUF294 PF03445.8 gi|410671467|ref|YP_006923838.1| - 0.027 14.0 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 MdcG PF10620.4 gi|410671467|ref|YP_006923838.1| - 0.043 13.3 0.0 0.063 12.8 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG EndIII_4Fe-2S PF10576.4 gi|410671468|ref|YP_006923839.1| - 0.0018 18.3 2.3 0.0023 18.0 1.6 1.2 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III zf-Mss51 PF13824.1 gi|410671468|ref|YP_006923839.1| - 0.031 14.1 0.1 0.031 14.1 0.0 1.1 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Cas_Cas02710 PF09670.5 gi|410671469|ref|YP_006923840.1| - 1.2e-06 27.3 0.1 1.7e-06 26.9 0.1 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) Cas_APE2256 PF09651.5 gi|410671469|ref|YP_006923840.1| - 0.00033 20.3 0.1 0.00059 19.5 0.1 1.4 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) DUF3972 PF13118.1 gi|410671469|ref|YP_006923840.1| - 0.0077 16.3 0.1 0.018 15.1 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3972) SNase PF00565.12 gi|410671471|ref|YP_006923842.1| - 1.9e-09 37.7 0.3 2.5e-09 37.3 0.2 1.1 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Treslin_N PF15292.1 gi|410671474|ref|YP_006923845.1| - 0.043 11.6 1.8 0.042 11.7 1.2 1.0 1 0 0 1 1 1 0 Treslin N-terminus DUF3571 PF12095.3 gi|410671474|ref|YP_006923845.1| - 0.066 13.4 2.7 0.097 12.9 1.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3571) DUF1699 PF08004.6 gi|410671476|ref|YP_006923847.1| - 2.7e-59 198.4 0.5 3e-59 198.2 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Lactamase_B PF00753.22 gi|410671478|ref|YP_006923849.1| - 6.3e-12 45.5 1.7 2e-11 43.9 1.2 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|410671478|ref|YP_006923849.1| - 1.7e-06 27.7 0.1 2.3e-06 27.2 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|410671478|ref|YP_006923849.1| - 0.0042 16.8 0.7 0.018 14.7 0.5 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF498 PF04430.9 gi|410671478|ref|YP_006923849.1| - 0.021 14.3 0.0 0.037 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF498/DUF598) DUF3006 PF11213.3 gi|410671479|ref|YP_006923850.1| - 7.9e-22 76.8 1.7 8.7e-22 76.6 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) UPF0302 PF08864.5 gi|410671482|ref|YP_006923853.1| - 0.058 13.1 0.3 0.059 13.1 0.2 1.0 1 0 0 1 1 1 0 UPF0302 domain Cas_Cas02710 PF09670.5 gi|410671487|ref|YP_006923858.1| - 0.097 11.2 0.0 0.11 11.0 0.0 1.3 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) Radical_SAM PF04055.16 gi|410671488|ref|YP_006923859.1| - 2.9e-22 79.5 0.2 4.9e-22 78.8 0.1 1.4 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|410671488|ref|YP_006923859.1| - 3.3e-11 43.2 0.2 2.6e-10 40.3 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|410671488|ref|YP_006923859.1| - 1.4e-08 34.9 0.1 2.2e-08 34.3 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|410671490|ref|YP_006923861.1| - 8.6e-17 61.8 0.2 1e-16 61.5 0.1 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|410671490|ref|YP_006923861.1| - 1e-11 44.8 0.3 1.9e-11 44.0 0.2 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|410671490|ref|YP_006923861.1| - 2.7e-09 37.2 0.3 4.5e-09 36.5 0.2 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain TPR_12 PF13424.1 gi|410671491|ref|YP_006923862.1| - 1.4e-08 34.5 8.0 0.0039 17.0 0.0 6.6 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|410671491|ref|YP_006923862.1| - 0.00079 19.0 17.9 0.1 12.4 0.0 6.8 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|410671491|ref|YP_006923862.1| - 0.0042 16.6 13.6 0.28 10.8 0.1 5.9 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|410671491|ref|YP_006923862.1| - 0.0068 16.2 16.9 0.066 13.1 0.1 6.7 8 0 0 8 8 8 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|410671491|ref|YP_006923862.1| - 0.0088 15.7 1.5 1.6 8.7 0.1 4.8 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|410671491|ref|YP_006923862.1| - 0.027 14.3 3.0 1.5 8.7 0.0 3.3 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_11 PF13414.1 gi|410671491|ref|YP_006923862.1| - 0.028 14.0 19.8 0.038 13.6 0.2 5.4 7 0 0 7 7 7 0 TPR repeat TPR_6 PF13174.1 gi|410671491|ref|YP_006923862.1| - 0.068 13.6 1.8 1.5 9.4 0.1 4.1 4 0 0 4 4 3 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|410671491|ref|YP_006923862.1| - 0.13 12.6 11.7 0.21 11.9 0.1 4.8 6 1 0 7 7 6 0 Tetratricopeptide repeat Apc3 PF12895.2 gi|410671491|ref|YP_006923862.1| - 0.14 12.3 13.9 1.9 8.7 0.2 5.0 5 1 2 7 7 7 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_16 PF13432.1 gi|410671491|ref|YP_006923862.1| - 0.82 10.4 0.0 0.82 10.4 0.0 3.1 5 0 0 5 5 4 0 Tetratricopeptide repeat Abi PF02517.11 gi|410671492|ref|YP_006923863.1| - 6.1e-10 39.1 7.1 6.1e-10 39.1 4.9 2.8 3 1 0 3 3 3 1 CAAX protease self-immunity DUF2593 PF10767.4 gi|410671492|ref|YP_006923863.1| - 0.11 12.1 2.9 0.53 9.9 0.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF2593) Epiglycanin_C PF14654.1 gi|410671492|ref|YP_006923863.1| - 0.71 9.8 3.0 0.88 9.6 0.1 2.1 2 0 0 2 2 2 0 Mucin, catalytic, TM and cytoplasmic tail region Gluconate_2-dh3 PF13618.1 gi|410671493|ref|YP_006923864.1| - 0.13 12.3 0.2 0.14 12.2 0.2 1.0 1 0 0 1 1 1 0 Gluconate 2-dehydrogenase subunit 3 PhoU PF01895.14 gi|410671493|ref|YP_006923864.1| - 0.15 12.5 5.8 0.19 12.1 4.0 1.4 1 1 0 1 1 1 0 PhoU domain CorA PF01544.13 gi|410671493|ref|YP_006923864.1| - 0.9 8.5 3.7 0.84 8.6 2.6 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein IncA PF04156.9 gi|410671493|ref|YP_006923864.1| - 1 8.9 3.3 1.2 8.7 2.3 1.1 1 0 0 1 1 1 0 IncA protein Isy1 PF06246.7 gi|410671493|ref|YP_006923864.1| - 3.1 7.1 7.6 3.6 6.9 5.3 1.0 1 0 0 1 1 1 0 Isy1-like splicing family MCM PF00493.18 gi|410671494|ref|YP_006923865.1| - 0.022 13.5 0.0 0.034 12.9 0.0 1.3 1 0 0 1 1 1 0 MCM2/3/5 family Cdc6_C PF09079.6 gi|410671495|ref|YP_006923866.1| - 1e-07 31.5 0.5 7.7e-07 28.7 0.3 2.5 2 0 0 2 2 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|410671495|ref|YP_006923866.1| - 0.014 15.4 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain DUF815 PF05673.8 gi|410671495|ref|YP_006923866.1| - 0.02 13.8 0.0 0.037 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_22 PF13401.1 gi|410671495|ref|YP_006923866.1| - 0.078 13.1 0.3 0.55 10.3 0.0 2.4 2 2 0 2 2 2 0 AAA domain EVE PF01878.13 gi|410671502|ref|YP_006923873.1| - 0.0022 18.0 0.0 0.0051 16.8 0.0 1.7 1 0 0 1 1 1 1 EVE domain DUF4485 PF14846.1 gi|410671502|ref|YP_006923873.1| - 0.0026 17.4 0.1 0.0059 16.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4485) Acetyltransf_4 PF13420.1 gi|410671503|ref|YP_006923874.1| - 0.00018 21.4 0.2 0.0012 18.8 0.0 2.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain UPF0302 PF08864.5 gi|410671503|ref|YP_006923874.1| - 0.033 14.0 0.3 0.095 12.5 0.2 1.8 1 0 0 1 1 1 0 UPF0302 domain Acetyltransf_7 PF13508.1 gi|410671503|ref|YP_006923874.1| - 0.069 13.3 0.1 0.32 11.2 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain N6_Mtase PF02384.11 gi|410671504|ref|YP_006923875.1| - 9.8e-56 189.0 0.0 1.9e-55 188.1 0.0 1.4 1 1 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|410671504|ref|YP_006923875.1| - 2e-15 57.4 0.4 7.5e-15 55.5 0.1 2.1 2 0 0 2 2 2 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|410671504|ref|YP_006923875.1| - 1.4e-13 50.9 0.0 2.6e-13 50.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|410671504|ref|YP_006923875.1| - 2.5e-10 40.2 0.0 4.2e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|410671504|ref|YP_006923875.1| - 0.00099 18.5 0.0 0.0037 16.6 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain Eco57I PF07669.6 gi|410671504|ref|YP_006923875.1| - 0.001 19.3 0.0 0.0023 18.2 0.0 1.6 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_31 PF13847.1 gi|410671504|ref|YP_006923875.1| - 0.001 18.6 0.0 0.029 13.9 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Tubulin_C PF03953.12 gi|410671504|ref|YP_006923875.1| - 0.031 14.3 0.0 0.065 13.2 0.0 1.5 1 0 0 1 1 1 0 Tubulin C-terminal domain UvrD-helicase PF00580.16 gi|410671506|ref|YP_006923877.1| - 1.3e-08 34.5 0.0 3e-06 26.7 0.0 2.3 1 1 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_30 PF13604.1 gi|410671506|ref|YP_006923877.1| - 7.5e-05 22.3 0.0 0.012 15.2 0.0 2.5 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|410671506|ref|YP_006923877.1| - 0.0007 19.7 0.0 0.095 12.8 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|410671506|ref|YP_006923877.1| - 0.00071 19.2 0.0 0.17 11.6 0.0 2.6 2 0 0 2 2 2 1 Part of AAA domain Viral_helicase1 PF01443.13 gi|410671506|ref|YP_006923877.1| - 0.0026 17.3 0.0 0.59 9.6 0.0 2.5 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase PhoH PF02562.11 gi|410671506|ref|YP_006923877.1| - 0.0066 15.7 0.1 0.67 9.1 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_11 PF13086.1 gi|410671506|ref|YP_006923877.1| - 0.012 15.1 0.0 0.18 11.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|410671506|ref|YP_006923877.1| - 0.047 13.3 0.0 0.3 10.7 0.0 2.0 2 0 0 2 2 2 0 Archaeal ATPase AAA_10 PF12846.2 gi|410671506|ref|YP_006923877.1| - 0.05 13.0 0.1 0.18 11.2 0.0 1.9 2 1 1 3 3 3 0 AAA-like domain AAA_14 PF13173.1 gi|410671506|ref|YP_006923877.1| - 0.068 13.0 0.0 3.2 7.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|410671506|ref|YP_006923877.1| - 0.16 11.9 0.0 0.29 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|410671506|ref|YP_006923877.1| - 0.24 12.2 2.2 3.7 8.3 1.3 2.6 1 1 0 1 1 1 0 AAA domain Flg_new PF09479.5 gi|410671512|ref|YP_006923883.1| - 5e-83 272.8 90.0 7.6e-10 38.6 0.4 11.9 11 0 0 11 11 11 11 Listeria-Bacteroides repeat domain (List_Bact_rpt) LRR_5 PF13306.1 gi|410671512|ref|YP_006923883.1| - 3.4e-73 243.4 23.1 1.6e-21 76.3 1.1 5.6 3 2 3 6 6 6 5 Leucine rich repeats (6 copies) LRR_8 PF13855.1 gi|410671512|ref|YP_006923883.1| - 9e-15 54.1 0.0 0.1 12.3 0.0 8.6 5 3 4 9 9 9 3 Leucine rich repeat Ribosomal_L27 PF01016.14 gi|410671512|ref|YP_006923883.1| - 0.027 14.2 2.8 33 4.3 0.0 5.3 6 1 1 7 7 7 0 Ribosomal L27 protein IPI_T4 PF11634.3 gi|410671512|ref|YP_006923883.1| - 0.38 10.6 3.3 3.1 7.7 0.0 3.6 4 0 0 4 4 4 0 Nuclease inhibitor from bacteriophage T4 HTH_23 PF13384.1 gi|410671513|ref|YP_006923884.1| - 0.05 13.2 0.0 0.081 12.6 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.1 gi|410671513|ref|YP_006923884.1| - 0.089 12.8 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain KaiC PF06745.8 gi|410671513|ref|YP_006923884.1| - 0.12 11.4 0.1 0.54 9.3 0.1 1.8 1 1 1 2 2 2 0 KaiC HTH_Tnp_1 PF01527.15 gi|410671513|ref|YP_006923884.1| - 0.13 12.1 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Transposase TBP PF00352.16 gi|410671514|ref|YP_006923885.1| - 2.9e-24 84.2 0.2 2.8e-11 42.6 0.0 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|410671514|ref|YP_006923885.1| - 0.073 13.1 0.3 1 9.4 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3378) Methyltrn_RNA_2 PF04013.7 gi|410671514|ref|YP_006923885.1| - 0.11 12.0 0.2 0.16 11.4 0.1 1.2 1 0 0 1 1 1 0 Putative SAM-dependent RNA methyltransferase Phage_integrase PF00589.17 gi|410671516|ref|YP_006923887.1| - 6.5e-20 71.4 0.0 1e-19 70.8 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family DZR PF12773.2 gi|410671516|ref|YP_006923887.1| - 0.0063 16.3 5.0 0.014 15.2 3.5 1.6 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|410671516|ref|YP_006923887.1| - 0.018 14.5 5.4 0.037 13.5 3.7 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Phage_int_SAM_4 PF13495.1 gi|410671516|ref|YP_006923887.1| - 0.025 14.8 0.0 0.094 13.0 0.0 1.9 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain zf-ribbon_3 PF13248.1 gi|410671516|ref|YP_006923887.1| - 0.044 13.0 4.8 0.082 12.1 3.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain phiKZ_IP PF12699.2 gi|410671516|ref|YP_006923887.1| - 0.049 12.5 0.1 0.073 11.9 0.0 1.2 1 0 0 1 1 1 0 phiKZ-like phage internal head proteins Spt4 PF06093.8 gi|410671516|ref|YP_006923887.1| - 0.43 10.4 3.5 0.86 9.5 2.5 1.5 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger zf-RanBP PF00641.13 gi|410671516|ref|YP_006923887.1| - 6.2 6.0 8.8 12 5.1 6.1 1.4 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others Phage_integrase PF00589.17 gi|410671517|ref|YP_006923888.1| - 4.5e-19 68.7 0.1 1.5e-18 67.0 0.0 1.9 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|410671517|ref|YP_006923888.1| - 0.00039 20.4 0.2 0.0023 18.0 0.0 2.3 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|410671517|ref|YP_006923888.1| - 0.00045 20.4 0.4 0.042 14.1 0.1 2.7 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain DZR PF12773.2 gi|410671517|ref|YP_006923888.1| - 0.00063 19.5 0.2 0.0012 18.6 0.1 1.4 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|410671517|ref|YP_006923888.1| - 0.0007 19.2 2.1 0.0012 18.4 1.5 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|410671517|ref|YP_006923888.1| - 0.0097 15.0 3.5 0.017 14.3 2.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|410671517|ref|YP_006923888.1| - 0.014 15.0 0.2 0.032 13.8 0.1 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain EF-hand_3 PF09069.6 gi|410671517|ref|YP_006923888.1| - 0.042 13.9 0.1 0.7 9.9 0.0 2.8 3 0 0 3 3 3 0 EF-hand zinc_ribbon_2 PF13240.1 gi|410671517|ref|YP_006923888.1| - 0.047 13.2 3.7 0.099 12.1 2.6 1.6 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|410671517|ref|YP_006923888.1| - 0.25 10.9 4.1 2.2 7.9 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|410671517|ref|YP_006923888.1| - 0.34 10.2 3.2 0.72 9.2 2.2 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|410671517|ref|YP_006923888.1| - 0.7 9.6 5.0 2.3 7.9 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain Aldolase_II PF00596.16 gi|410671518|ref|YP_006923889.1| - 9.7e-34 116.5 0.1 1.1e-33 116.4 0.1 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain CDP-OH_P_transf PF01066.16 gi|410671519|ref|YP_006923890.1| - 4.5e-15 55.7 8.5 2.8e-14 53.2 5.9 2.0 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase DUF2892 PF11127.3 gi|410671519|ref|YP_006923890.1| - 0.075 12.8 0.6 0.075 12.8 0.4 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2892) TraW_N PF12477.3 gi|410671519|ref|YP_006923890.1| - 0.39 10.7 0.0 0.39 10.7 0.0 2.8 4 0 0 4 4 4 0 Sex factor F TraW protein N terminal Archease PF01951.11 gi|410671520|ref|YP_006923891.1| - 1e-42 145.3 0.3 1.1e-42 145.1 0.2 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) RtcB PF01139.12 gi|410671521|ref|YP_006923892.1| - 3.5e-156 520.4 0.0 3.9e-156 520.2 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DUF993 PF06187.6 gi|410671521|ref|YP_006923892.1| - 0.01 14.3 0.0 0.016 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF993) DUF2703 PF10865.3 gi|410671521|ref|YP_006923892.1| - 0.079 12.8 0.2 5.1 7.0 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF2703) TGT_C2 PF14810.1 gi|410671522|ref|YP_006923893.1| - 6.8e-28 96.3 0.0 1.1e-27 95.6 0.0 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|410671522|ref|YP_006923893.1| - 9.3e-15 54.1 0.7 2e-14 53.0 0.2 1.8 2 1 0 2 2 2 1 PUA domain Bactofilin PF04519.8 gi|410671523|ref|YP_006923894.1| - 5.9e-10 39.0 12.3 0.0016 18.3 0.3 4.2 3 2 0 4 4 4 3 Polymer-forming cytoskeletal DUF3494 PF11999.3 gi|410671523|ref|YP_006923894.1| - 0.083 12.5 0.3 1.7 8.2 0.0 2.8 2 2 1 3 3 3 0 Protein of unknown function (DUF3494) Hexapep PF00132.19 gi|410671523|ref|YP_006923894.1| - 3.6 7.2 24.5 0.2 11.1 0.3 6.2 6 2 2 8 8 8 0 Bacterial transferase hexapeptide (six repeats) Gryzun-like PF12742.2 gi|410671524|ref|YP_006923895.1| - 0.12 12.1 0.2 0.26 11.1 0.0 1.6 2 0 0 2 2 2 0 Gryzun, putative Golgi trafficking DUF1673 PF07895.6 gi|410671524|ref|YP_006923895.1| - 2.8 7.4 6.0 3.8 6.9 4.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) Tetraspannin PF00335.15 gi|410671524|ref|YP_006923895.1| - 4.1 6.6 9.0 5.3 6.2 6.2 1.1 1 0 0 1 1 1 0 Tetraspanin family Aminotran_3 PF00202.16 gi|410671525|ref|YP_006923896.1| - 1.1e-115 386.1 0.5 1.3e-115 385.9 0.3 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|410671525|ref|YP_006923896.1| - 2.4e-07 30.0 0.0 3e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|410671525|ref|YP_006923896.1| - 0.00032 19.5 0.0 0.0018 17.0 0.0 2.1 2 1 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|410671525|ref|YP_006923896.1| - 0.0007 18.8 0.5 0.0014 17.8 0.3 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|410671525|ref|YP_006923896.1| - 0.0011 17.3 0.1 0.0015 16.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DUF1860 PF08949.5 gi|410671525|ref|YP_006923896.1| - 0.0019 17.8 0.0 0.0038 16.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1860) DegT_DnrJ_EryC1 PF01041.12 gi|410671525|ref|YP_006923896.1| - 0.0048 15.9 0.9 0.019 13.9 0.6 1.8 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|410671526|ref|YP_006923897.1| - 1.2e-55 188.9 0.0 1.4e-55 188.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|410671526|ref|YP_006923897.1| - 6.1e-06 25.5 0.0 8.6e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.8 gi|410671526|ref|YP_006923897.1| - 1.6e-05 23.7 0.0 5.4e-05 22.0 0.0 1.7 2 0 0 2 2 2 1 Allinase Cys_Met_Meta_PP PF01053.15 gi|410671526|ref|YP_006923897.1| - 0.0088 14.3 0.0 0.039 12.2 0.0 1.8 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DUF3670 PF12419.3 gi|410671526|ref|YP_006923897.1| - 0.091 12.1 0.0 0.28 10.6 0.0 1.8 2 0 0 2 2 2 0 SNF2 Helicase protein DUF381 PF04038.7 gi|410671527|ref|YP_006923898.1| - 4.5e-26 90.6 0.3 6e-26 90.2 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|410671527|ref|YP_006923898.1| - 1.5e-22 78.7 0.0 2e-22 78.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF372) PLU-1 PF08429.6 gi|410671527|ref|YP_006923898.1| - 0.15 10.8 0.0 0.19 10.5 0.0 1.1 1 0 0 1 1 1 0 PLU-1-like protein CDP-OH_P_transf PF01066.16 gi|410671528|ref|YP_006923899.1| - 5.4e-10 39.4 12.1 5.4e-10 39.4 8.4 2.7 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF1516 PF07457.6 gi|410671528|ref|YP_006923899.1| - 6.7 6.8 10.9 0.7 10.0 0.9 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF1516) PS_Dcarbxylase PF02666.10 gi|410671529|ref|YP_006923900.1| - 3e-29 101.7 4.0 2.6e-25 88.9 0.9 2.1 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase RnfC_N PF13375.1 gi|410671529|ref|YP_006923900.1| - 0.0068 16.1 0.9 2 8.1 0.0 3.7 1 1 3 4 4 4 1 RnfC Barrel sandwich hybrid domain Exosortase_EpsH PF09721.5 gi|410671530|ref|YP_006923901.1| - 5.1e-51 173.4 22.4 6.1e-51 173.1 15.5 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) NUDIX PF00293.23 gi|410671531|ref|YP_006923902.1| - 2.7e-19 69.1 0.0 3.2e-19 68.9 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain TFIIS_C PF01096.13 gi|410671532|ref|YP_006923903.1| - 2.2e-17 62.4 2.6 2.2e-17 62.4 1.8 2.9 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|410671532|ref|YP_006923903.1| - 5.2e-08 32.4 2.2 5.2e-08 32.4 1.5 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|410671532|ref|YP_006923903.1| - 6e-05 22.6 9.5 6.2e-05 22.5 0.7 2.6 1 1 1 2 2 2 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|410671532|ref|YP_006923903.1| - 0.00041 20.0 5.1 0.076 12.8 0.1 2.4 2 0 0 2 2 2 2 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|410671532|ref|YP_006923903.1| - 0.0037 17.0 0.6 0.0037 17.0 0.4 2.6 2 1 0 2 2 2 1 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|410671532|ref|YP_006923903.1| - 0.0044 16.4 0.0 0.0044 16.4 0.0 3.2 3 1 0 3 3 3 1 DNA directed RNA polymerase, 7 kDa subunit IBR PF01485.16 gi|410671532|ref|YP_006923903.1| - 0.065 13.1 11.7 1.8 8.4 5.5 3.0 2 1 0 2 2 2 0 IBR domain zf-tcix PF14952.1 gi|410671532|ref|YP_006923903.1| - 0.065 12.5 12.8 0.22 10.8 3.1 3.4 3 1 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Terminase_GpA PF05876.7 gi|410671532|ref|YP_006923903.1| - 0.11 10.8 4.9 0.13 10.5 1.4 1.9 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) UPF0547 PF10571.4 gi|410671532|ref|YP_006923903.1| - 0.11 12.2 0.0 0.11 12.2 0.0 3.7 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|410671532|ref|YP_006923903.1| - 0.14 11.7 7.6 0.65 9.5 0.4 3.1 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Ogr_Delta PF04606.7 gi|410671532|ref|YP_006923903.1| - 0.14 11.8 8.5 0.23 11.1 0.2 3.2 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger Baculo_LEF5_C PF11792.3 gi|410671532|ref|YP_006923903.1| - 0.15 11.5 4.7 0.12 11.8 0.5 2.5 2 1 0 2 2 2 0 Baculoviridae late expression factor 5 C-terminal domain zinc_ribbon_5 PF13719.1 gi|410671532|ref|YP_006923903.1| - 0.19 11.3 14.7 1.3 8.6 0.3 3.8 3 1 1 4 4 4 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|410671532|ref|YP_006923903.1| - 0.38 10.4 6.2 3.2 7.5 0.4 3.6 3 1 0 3 3 3 0 Nudix N-terminal C1_1 PF00130.17 gi|410671532|ref|YP_006923903.1| - 0.67 9.7 7.5 0.62 9.8 0.3 2.4 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_4 PF13717.1 gi|410671532|ref|YP_006923903.1| - 0.68 9.6 16.1 1.5 8.5 0.4 3.8 3 1 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|410671532|ref|YP_006923903.1| - 0.86 8.8 13.2 1.2 8.4 0.3 3.8 3 1 0 3 3 3 0 zinc-ribbon domain DUF2387 PF09526.5 gi|410671532|ref|YP_006923903.1| - 0.94 9.4 12.9 3.9 7.4 3.0 3.0 1 1 2 3 3 3 0 Probable metal-binding protein (DUF2387) Eapp_C PF10238.4 gi|410671532|ref|YP_006923903.1| - 0.97 9.3 5.1 0.12 12.2 0.4 1.9 1 1 1 2 2 2 0 E2F-associated phosphoprotein Zn-ribbon_8 PF09723.5 gi|410671532|ref|YP_006923903.1| - 1.1 9.2 10.2 16 5.5 0.1 4.0 4 0 0 4 4 4 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|410671532|ref|YP_006923903.1| - 1.4 8.4 15.1 9.3 5.8 0.1 4.0 4 1 0 4 4 4 0 zinc-ribbon domain DUF2072 PF09845.4 gi|410671532|ref|YP_006923903.1| - 2.4 8.1 9.0 0.33 10.8 1.5 2.4 1 1 2 3 3 3 0 Zn-ribbon containing protein (DUF2072) Sgf11 PF08209.6 gi|410671532|ref|YP_006923903.1| - 2.5 7.4 5.6 17 4.8 0.1 3.2 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) Lar_restr_allev PF14354.1 gi|410671532|ref|YP_006923903.1| - 3.1 8.1 8.9 2.6 8.4 0.8 3.2 1 1 2 3 3 3 0 Restriction alleviation protein Lar A2L_zn_ribbon PF08792.5 gi|410671532|ref|YP_006923903.1| - 3.6 7.1 10.9 3.3 7.2 0.0 3.8 4 0 0 4 4 4 0 A2L zinc ribbon domain zf-TFIIB PF13453.1 gi|410671532|ref|YP_006923903.1| - 3.9 6.7 11.6 2.6 7.3 1.4 3.2 3 1 0 3 3 3 0 Transcription factor zinc-finger zf-C4_Topoisom PF01396.14 gi|410671532|ref|YP_006923903.1| - 5 6.7 10.2 17 4.9 2.0 3.3 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|410671532|ref|YP_006923903.1| - 5.6 6.3 11.5 8.8 5.7 1.9 3.8 3 1 1 4 4 4 0 TFIIB zinc-binding Rpr2 PF04032.11 gi|410671532|ref|YP_006923903.1| - 6.8 6.6 10.3 13 5.7 5.1 2.3 2 1 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain PCNA_N PF00705.13 gi|410671533|ref|YP_006923904.1| - 2.8e-16 59.1 0.5 9.4e-16 57.4 0.2 1.9 2 1 1 3 3 3 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|410671533|ref|YP_006923904.1| - 4.4e-08 33.0 0.0 2.5e-07 30.6 0.0 2.2 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|410671533|ref|YP_006923904.1| - 5.7e-05 22.3 0.0 0.0011 18.1 0.0 2.2 2 0 0 2 2 2 1 Rad9 DNA_primase_lrg PF04104.9 gi|410671534|ref|YP_006923905.1| - 4e-36 124.6 0.0 6.8e-36 123.8 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit GATase_3 PF07685.9 gi|410671535|ref|YP_006923906.1| - 2.3e-30 105.2 0.3 3.5e-30 104.6 0.2 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|410671535|ref|YP_006923906.1| - 1.4e-25 89.8 0.0 2.4e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|410671535|ref|YP_006923906.1| - 6.6e-20 71.5 2.0 1.2e-12 47.9 0.1 2.2 1 1 0 2 2 2 2 AAA domain YHYH PF14240.1 gi|410671535|ref|YP_006923906.1| - 0.0034 17.0 0.0 0.0058 16.3 0.0 1.3 1 0 0 1 1 1 1 YHYH protein Peptidase_S51 PF03575.12 gi|410671535|ref|YP_006923906.1| - 0.02 14.6 0.0 0.033 13.9 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S51 Peptidase_C26 PF07722.8 gi|410671535|ref|YP_006923906.1| - 0.13 11.6 0.1 0.92 8.9 0.0 2.2 2 1 0 2 2 2 0 Peptidase C26 Radical_SAM PF04055.16 gi|410671536|ref|YP_006923907.1| - 5.9e-31 107.8 0.1 8.7e-31 107.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|410671536|ref|YP_006923907.1| - 1e-23 83.4 0.0 1.7e-23 82.7 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.1 gi|410671536|ref|YP_006923907.1| - 1e-08 35.2 0.0 2e-08 34.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|410671536|ref|YP_006923907.1| - 1.7e-07 31.4 0.0 6.1e-07 29.6 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain CytoC_RC PF02276.13 gi|410671536|ref|YP_006923907.1| - 0.068 12.2 0.1 0.12 11.4 0.1 1.3 1 0 0 1 1 1 0 Photosynthetic reaction centre cytochrome C subunit PAS_8 PF13188.1 gi|410671537|ref|YP_006923908.1| - 0.014 15.2 0.0 0.014 15.2 0.0 1.1 1 0 0 1 1 1 0 PAS domain PSI_PsaJ PF01701.13 gi|410671537|ref|YP_006923908.1| - 0.13 12.0 0.1 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Photosystem I reaction centre subunit IX / PsaJ SurE PF01975.12 gi|410671538|ref|YP_006923909.1| - 5.5e-57 192.2 0.1 6.8e-57 191.9 0.0 1.0 1 0 0 1 1 1 1 Survival protein SurE SIP PF04954.8 gi|410671538|ref|YP_006923909.1| - 0.16 12.3 0.0 0.31 11.4 0.0 1.4 1 0 0 1 1 1 0 Siderophore-interacting protein WASH-7_N PF14745.1 gi|410671539|ref|YP_006923910.1| - 0.039 12.1 2.4 0.048 11.8 1.6 1.1 1 0 0 1 1 1 0 WASH complex subunit 7, N-terminal Mut7-C PF01927.11 gi|410671539|ref|YP_006923910.1| - 0.065 13.2 0.2 0.091 12.7 0.1 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain HSBP1 PF06825.7 gi|410671539|ref|YP_006923910.1| - 0.091 12.3 0.6 0.18 11.3 0.4 1.4 1 0 0 1 1 1 0 Heat shock factor binding protein 1 Sec5 PF15469.1 gi|410671539|ref|YP_006923910.1| - 0.093 12.4 3.2 1 9.0 0.1 2.1 1 1 1 2 2 2 0 Exocyst complex component Sec5 STAT6_C PF14596.1 gi|410671541|ref|YP_006923912.1| - 0.084 12.8 0.0 0.089 12.7 0.0 1.0 1 0 0 1 1 1 0 STAT6 C-terminal tRNA-synt_2c PF01411.14 gi|410671542|ref|YP_006923913.1| - 1.6e-130 436.0 0.0 2.4e-130 435.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|410671542|ref|YP_006923913.1| - 1.9e-12 46.8 0.5 5e-12 45.5 0.4 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|410671542|ref|YP_006923913.1| - 7.3e-09 35.2 4.7 1.9e-08 33.8 3.3 1.7 1 0 0 1 1 1 1 DHHA1 domain Pro_CA PF00484.14 gi|410671542|ref|YP_006923913.1| - 0.022 14.7 0.5 0.082 12.9 0.4 2.0 1 0 0 1 1 1 0 Carbonic anhydrase GvpD PF07088.6 gi|410671543|ref|YP_006923914.1| - 2.4e-39 134.9 0.1 2e-31 108.9 0.0 3.0 1 1 1 2 2 2 2 GvpD gas vesicle protein KaiC PF06745.8 gi|410671543|ref|YP_006923914.1| - 3.4e-09 36.1 4.7 0.0014 17.7 0.0 3.6 3 1 1 4 4 4 3 KaiC PAXNEB PF05625.6 gi|410671543|ref|YP_006923914.1| - 9.2e-05 21.4 0.0 0.00016 20.6 0.0 1.4 1 0 0 1 1 1 1 PAXNEB protein AAA_16 PF13191.1 gi|410671543|ref|YP_006923914.1| - 0.00077 19.4 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|410671543|ref|YP_006923914.1| - 0.0011 18.6 0.0 0.0031 17.2 0.0 1.7 2 0 0 2 2 2 1 Part of AAA domain AAA PF00004.24 gi|410671543|ref|YP_006923914.1| - 0.0018 18.4 0.0 0.0049 17.0 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|410671543|ref|YP_006923914.1| - 0.013 14.4 0.0 0.044 12.7 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.1 gi|410671543|ref|YP_006923914.1| - 0.018 14.4 0.0 0.47 9.8 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_22 PF13401.1 gi|410671543|ref|YP_006923914.1| - 0.02 15.0 0.0 0.04 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|410671543|ref|YP_006923914.1| - 0.024 14.5 0.0 0.048 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|410671543|ref|YP_006923914.1| - 0.027 14.0 0.0 0.037 13.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|410671543|ref|YP_006923914.1| - 0.053 14.3 0.0 0.11 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|410671543|ref|YP_006923914.1| - 0.071 12.7 0.1 0.17 11.5 0.0 1.6 2 0 0 2 2 2 0 NACHT domain AAA_18 PF13238.1 gi|410671543|ref|YP_006923914.1| - 0.13 12.5 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DAP3 PF10236.4 gi|410671543|ref|YP_006923914.1| - 0.13 11.1 0.0 12 4.7 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Response_reg PF00072.19 gi|410671544|ref|YP_006923915.1| - 1.1e-28 99.5 2.1 1.2e-28 99.3 0.6 1.7 2 0 0 2 2 2 1 Response regulator receiver domain GSAP-16 PF14959.1 gi|410671544|ref|YP_006923915.1| - 0.1 12.3 0.2 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 gamma-Secretase-activating protein C-term Response_reg PF00072.19 gi|410671545|ref|YP_006923916.1| - 5.7e-27 93.9 0.5 6.3e-27 93.7 0.3 1.0 1 0 0 1 1 1 1 Response regulator receiver domain rpo132 PF12415.3 gi|410671545|ref|YP_006923916.1| - 0.11 11.4 0.4 0.28 10.1 0.1 1.7 2 0 0 2 2 2 0 Poxvirus DNA dependent RNA polymerase Methyltransf_31 PF13847.1 gi|410671546|ref|YP_006923917.1| - 4.2e-08 32.9 0.0 1.5e-07 31.1 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|410671546|ref|YP_006923917.1| - 0.00026 20.6 0.0 0.00041 19.9 0.0 1.5 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_26 PF13659.1 gi|410671546|ref|YP_006923917.1| - 0.00052 20.0 0.0 0.00092 19.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410671546|ref|YP_006923917.1| - 0.0024 18.4 0.0 0.0057 17.2 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|410671546|ref|YP_006923917.1| - 0.013 14.5 0.0 0.019 14.0 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Cons_hypoth95 PF03602.10 gi|410671546|ref|YP_006923917.1| - 0.03 13.7 0.0 0.046 13.1 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Arch_fla_DE PF04659.8 gi|410671547|ref|YP_006923918.1| - 9.9e-32 108.7 1.6 6.6e-31 106.0 0.0 2.6 3 0 0 3 3 2 1 Archaeal flagella protein FlaC_arch PF05377.6 gi|410671547|ref|YP_006923918.1| - 2.2e-18 65.8 18.9 5.4e-18 64.6 2.5 4.2 3 1 1 4 4 4 2 Flagella accessory protein C (FlaC) EzrA PF06160.7 gi|410671547|ref|YP_006923918.1| - 0.00064 18.0 12.1 0.0031 15.7 1.5 2.4 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA BLOC1_2 PF10046.4 gi|410671547|ref|YP_006923918.1| - 0.0031 17.5 9.4 0.3 11.2 1.3 2.8 2 1 0 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 MCPsignal PF00015.16 gi|410671547|ref|YP_006923918.1| - 0.0079 15.7 11.8 0.021 14.3 4.2 2.2 2 0 0 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF1664 PF07889.7 gi|410671547|ref|YP_006923918.1| - 0.0092 15.7 12.7 0.038 13.7 3.2 2.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1664) RmuC PF02646.11 gi|410671547|ref|YP_006923918.1| - 0.012 14.4 1.2 0.012 14.4 0.8 2.5 2 0 0 2 2 2 0 RmuC family Flu_NS2 PF00601.14 gi|410671547|ref|YP_006923918.1| - 0.014 15.5 1.2 0.014 15.5 0.8 2.5 2 1 0 2 2 2 0 Influenza non-structural protein (NS2) Herpes_U30 PF04523.8 gi|410671547|ref|YP_006923918.1| - 0.018 12.4 0.8 0.023 12.1 0.5 1.2 1 0 0 1 1 1 0 Herpes virus tegument protein U30 DASH_Dad2 PF08654.5 gi|410671547|ref|YP_006923918.1| - 0.025 14.5 4.3 0.065 13.2 1.5 2.4 1 1 1 2 2 2 0 DASH complex subunit Dad2 DUF948 PF06103.6 gi|410671547|ref|YP_006923918.1| - 0.096 12.5 10.5 0.085 12.7 1.2 3.3 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) CENP-F_leu_zip PF10473.4 gi|410671547|ref|YP_006923918.1| - 0.14 12.0 18.2 0.5 10.2 5.5 2.5 3 0 0 3 3 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Nup54 PF13874.1 gi|410671547|ref|YP_006923918.1| - 0.16 11.6 9.9 1.7 8.2 2.5 2.5 1 1 0 2 2 2 0 Nucleoporin complex subunit 54 DUF2317 PF10079.4 gi|410671547|ref|YP_006923918.1| - 0.19 10.2 7.0 0.2 10.2 0.7 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2317) Reo_sigmaC PF04582.7 gi|410671547|ref|YP_006923918.1| - 0.21 10.7 12.7 1.3 8.1 3.2 2.1 1 1 0 2 2 2 0 Reovirus sigma C capsid protein V_ATPase_I PF01496.14 gi|410671547|ref|YP_006923918.1| - 0.29 8.9 14.5 0.08 10.7 5.5 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF16 PF01519.11 gi|410671547|ref|YP_006923918.1| - 0.31 11.2 12.3 0.94 9.7 1.4 2.8 2 1 0 2 2 2 0 Protein of unknown function DUF16 AF0941-like PF14591.1 gi|410671547|ref|YP_006923918.1| - 0.33 11.0 12.6 0.36 10.8 5.4 2.7 1 1 1 2 2 2 0 AF0941-like Tropomyosin_1 PF12718.2 gi|410671547|ref|YP_006923918.1| - 0.38 10.5 20.0 0.83 9.4 6.5 2.3 2 0 0 2 2 2 0 Tropomyosin like PEP-utilisers_N PF05524.8 gi|410671547|ref|YP_006923918.1| - 0.56 10.0 6.5 1.2 8.9 1.7 2.9 3 1 0 3 3 3 0 PEP-utilising enzyme, N-terminal Laminin_II PF06009.7 gi|410671547|ref|YP_006923918.1| - 0.79 9.4 12.0 1.8 8.3 2.5 2.7 1 1 2 3 3 3 0 Laminin Domain II Vps5 PF09325.5 gi|410671547|ref|YP_006923918.1| - 0.81 8.8 10.6 0.22 10.7 3.3 2.3 2 0 0 2 2 2 0 Vps5 C terminal like ORF6C PF10552.4 gi|410671547|ref|YP_006923918.1| - 0.82 9.4 14.2 8.3 6.1 1.5 4.5 3 1 2 5 5 5 0 ORF6C domain AAA_13 PF13166.1 gi|410671547|ref|YP_006923918.1| - 1.1 7.5 15.0 0.64 8.3 6.9 1.8 1 1 1 2 2 2 0 AAA domain Nsp1_C PF05064.8 gi|410671547|ref|YP_006923918.1| - 1.2 8.7 12.4 1.8 8.2 1.0 2.6 2 1 0 2 2 2 0 Nsp1-like C-terminal region NPV_P10 PF05531.7 gi|410671547|ref|YP_006923918.1| - 1.4 9.2 11.5 10 6.4 1.5 3.5 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.6 gi|410671547|ref|YP_006923918.1| - 1.8 7.1 15.2 0.72 8.4 4.4 2.2 2 0 0 2 2 2 0 Spc7 kinetochore protein Syntaxin-6_N PF09177.6 gi|410671547|ref|YP_006923918.1| - 2.8 8.3 11.7 2.4 8.6 3.4 3.0 1 1 2 3 3 3 0 Syntaxin 6, N-terminal TBPIP PF07106.8 gi|410671547|ref|YP_006923918.1| - 3.6 7.1 18.2 0.29 10.6 5.3 2.6 1 1 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) COG2 PF06148.6 gi|410671547|ref|YP_006923918.1| - 4.1 7.2 8.1 1.3 8.9 0.6 2.8 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Fib_alpha PF08702.5 gi|410671547|ref|YP_006923918.1| - 7 6.7 12.0 5.2 7.1 2.9 2.7 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Hormone_1 PF00103.15 gi|410671547|ref|YP_006923918.1| - 7.8 5.7 7.7 22 4.3 1.8 2.7 1 1 2 3 3 3 0 Somatotropin hormone family Arch_flagellin PF01917.11 gi|410671548|ref|YP_006923919.1| - 5.4e-08 32.6 2.0 1.6e-06 27.8 1.4 2.0 1 1 0 1 1 1 1 Archaebacterial flagellin TarH PF02203.10 gi|410671548|ref|YP_006923919.1| - 0.006 16.4 0.1 0.0073 16.1 0.1 1.1 1 0 0 1 1 1 1 Tar ligand binding domain homologue Monooxygenase_B PF04744.7 gi|410671548|ref|YP_006923919.1| - 0.09 11.4 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 Monooxygenase subunit B protein FixH PF05751.6 gi|410671548|ref|YP_006923919.1| - 0.18 11.6 1.9 0.54 10.0 1.3 2.1 1 1 0 1 1 1 0 FixH Arch_flagellin PF01917.11 gi|410671549|ref|YP_006923920.1| - 8.7e-10 38.5 0.3 3.2e-09 36.6 0.2 1.7 1 1 0 1 1 1 1 Archaebacterial flagellin KaiC PF06745.8 gi|410671550|ref|YP_006923921.1| - 1.1e-15 57.3 0.0 1.4e-15 57.0 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|410671550|ref|YP_006923921.1| - 6.5e-05 22.4 0.0 0.00013 21.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|410671550|ref|YP_006923921.1| - 0.00024 21.3 0.1 0.00041 20.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|410671550|ref|YP_006923921.1| - 0.001 18.5 0.1 0.0017 17.7 0.1 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_5 PF07728.9 gi|410671550|ref|YP_006923921.1| - 0.0023 17.6 0.0 0.0035 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|410671550|ref|YP_006923921.1| - 0.042 13.5 0.2 0.15 11.6 0.1 1.9 1 1 0 1 1 1 0 NACHT domain AAA_17 PF13207.1 gi|410671550|ref|YP_006923921.1| - 0.046 14.5 0.1 0.075 13.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|410671550|ref|YP_006923921.1| - 0.077 12.4 0.0 0.14 11.5 0.0 1.5 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain DUF2348 PF09807.4 gi|410671550|ref|YP_006923921.1| - 0.081 12.0 0.0 0.093 11.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2348) Phage_GPD PF05954.6 gi|410671550|ref|YP_006923921.1| - 0.082 12.0 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Phage late control gene D protein (GPD) AAA_22 PF13401.1 gi|410671550|ref|YP_006923921.1| - 0.083 13.0 0.3 0.25 11.4 0.2 1.7 1 1 0 1 1 1 0 AAA domain PRK PF00485.13 gi|410671550|ref|YP_006923921.1| - 0.086 12.3 0.1 0.13 11.7 0.1 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family KTI12 PF08433.5 gi|410671550|ref|YP_006923921.1| - 0.16 11.1 0.2 0.34 10.0 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 PAXNEB PF05625.6 gi|410671550|ref|YP_006923921.1| - 0.38 9.5 4.9 4.7 5.9 0.5 2.1 2 0 0 2 2 2 0 PAXNEB protein T2SE PF00437.15 gi|410671551|ref|YP_006923922.1| - 5.8e-41 140.1 0.0 7.7e-41 139.7 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|410671551|ref|YP_006923922.1| - 3.1e-06 26.6 0.0 5.7e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|410671551|ref|YP_006923922.1| - 0.047 13.6 0.0 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain T2SF PF00482.18 gi|410671552|ref|YP_006923923.1| - 9.9e-17 61.0 0.1 4.5e-13 49.1 0.1 4.1 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F Iso_dh PF00180.15 gi|410671553|ref|YP_006923924.1| - 2.1e-99 332.8 0.0 2.3e-99 332.6 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.14 gi|410671555|ref|YP_006923926.1| - 2.5e-19 69.6 0.0 3.4e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|410671555|ref|YP_006923926.1| - 0.0015 17.9 0.0 0.1 11.9 0.0 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus STT3 PF02516.9 gi|410671556|ref|YP_006923927.1| - 5.6e-32 111.3 37.4 1.1e-31 110.4 25.9 1.3 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit DUF1673 PF07895.6 gi|410671556|ref|YP_006923927.1| - 0.15 11.6 12.3 0.029 13.8 1.3 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1673) Glyco_tranf_2_3 PF13641.1 gi|410671557|ref|YP_006923928.1| - 2.9e-27 95.9 0.0 4e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|410671557|ref|YP_006923928.1| - 4.3e-23 81.8 0.2 6.2e-23 81.3 0.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|410671557|ref|YP_006923928.1| - 5.2e-19 68.7 0.0 7.6e-19 68.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|410671557|ref|YP_006923928.1| - 2.9e-11 42.9 0.0 6.3e-11 41.8 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|410671557|ref|YP_006923928.1| - 3.4e-09 36.1 0.8 1e-08 34.6 0.2 1.8 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Anp1 PF03452.9 gi|410671557|ref|YP_006923928.1| - 0.1 11.7 0.1 0.16 11.0 0.1 1.2 1 0 0 1 1 1 0 Anp1 Capsule_synth PF05159.9 gi|410671558|ref|YP_006923929.1| - 7.3e-08 32.2 0.0 2.3e-07 30.5 0.0 1.7 2 0 0 2 2 2 1 Capsule polysaccharide biosynthesis protein NAGidase PF07555.8 gi|410671558|ref|YP_006923929.1| - 0.0038 16.1 0.0 0.0061 15.5 0.0 1.2 1 0 0 1 1 1 1 beta-N-acetylglucosaminidase Epimerase_2 PF02350.14 gi|410671558|ref|YP_006923929.1| - 0.034 12.9 0.0 0.054 12.2 0.0 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Methyltransf_23 PF13489.1 gi|410671559|ref|YP_006923930.1| - 1.2e-26 93.3 0.1 1.6e-26 92.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|410671559|ref|YP_006923930.1| - 1.1e-11 44.5 0.4 2.2e-11 43.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|410671559|ref|YP_006923930.1| - 3.3e-08 33.8 0.0 6.8e-08 32.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|410671559|ref|YP_006923930.1| - 1.5e-07 31.7 0.0 3e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410671559|ref|YP_006923930.1| - 2.5e-07 31.2 0.0 6.2e-07 29.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|410671559|ref|YP_006923930.1| - 5.5e-07 28.5 0.0 1e-06 27.7 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|410671559|ref|YP_006923930.1| - 2.7e-05 23.6 0.0 4e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|410671559|ref|YP_006923930.1| - 0.0013 18.8 0.0 0.0024 17.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain AdoMet_MTase PF07757.8 gi|410671559|ref|YP_006923930.1| - 0.0059 16.7 0.3 0.016 15.3 0.1 1.7 1 1 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase DREV PF05219.7 gi|410671559|ref|YP_006923930.1| - 0.016 14.0 0.0 0.025 13.4 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase NeuB PF03102.9 gi|410671560|ref|YP_006923931.1| - 4.1e-93 310.9 0.0 5e-93 310.6 0.0 1.1 1 0 0 1 1 1 1 NeuB family SAF PF08666.7 gi|410671560|ref|YP_006923931.1| - 2.2e-10 40.7 0.0 4.3e-10 39.8 0.0 1.5 1 0 0 1 1 1 1 SAF domain DUF460 PF04312.8 gi|410671560|ref|YP_006923931.1| - 0.094 12.2 0.0 0.22 11.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF460) HAD_2 PF13419.1 gi|410671561|ref|YP_006923932.1| - 7.2e-18 65.4 0.0 8.1e-18 65.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|410671561|ref|YP_006923932.1| - 1e-10 41.1 0.0 1.5e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|410671561|ref|YP_006923932.1| - 9.5e-07 29.4 0.0 1.1e-06 29.1 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPgrasp_Ter PF15632.1 gi|410671562|ref|YP_006923933.1| - 7.2e-40 136.7 0.0 1.1e-38 132.7 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|410671562|ref|YP_006923933.1| - 1.4e-20 73.8 0.0 2.7e-20 72.9 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|410671562|ref|YP_006923933.1| - 1.8e-18 66.9 0.0 2.8e-18 66.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|410671562|ref|YP_006923933.1| - 0.0014 17.9 0.0 0.03 13.6 0.0 2.2 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF1297 PF06973.7 gi|410671562|ref|YP_006923933.1| - 0.0054 16.0 0.0 0.9 8.8 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1297) RimK PF08443.6 gi|410671562|ref|YP_006923933.1| - 0.021 14.3 0.2 0.062 12.7 0.0 1.8 2 1 0 2 2 2 0 RimK-like ATP-grasp domain ATP-grasp PF02222.17 gi|410671562|ref|YP_006923933.1| - 0.022 14.0 0.0 0.043 13.1 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain Epimerase PF01370.16 gi|410671563|ref|YP_006923934.1| - 1.8e-28 99.6 0.0 2.2e-28 99.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|410671563|ref|YP_006923934.1| - 1.7e-10 40.2 0.0 2.1e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|410671563|ref|YP_006923934.1| - 1.1e-07 30.8 0.0 2.9e-07 29.4 0.0 2.0 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|410671563|ref|YP_006923934.1| - 3.3e-06 26.2 0.0 0.0017 17.2 0.0 3.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|410671563|ref|YP_006923934.1| - 0.00063 19.7 0.0 0.0059 16.6 0.0 2.1 2 1 1 3 3 3 1 NADH(P)-binding adh_short PF00106.20 gi|410671563|ref|YP_006923934.1| - 0.02 14.8 0.0 0.084 12.7 0.0 1.9 2 0 0 2 2 2 0 short chain dehydrogenase CwfJ_C_2 PF04676.9 gi|410671563|ref|YP_006923934.1| - 0.024 15.1 0.1 0.13 12.7 0.0 2.1 2 0 0 2 2 2 0 Protein similar to CwfJ C-terminus 2 Epimerase_Csub PF13950.1 gi|410671563|ref|YP_006923934.1| - 0.025 14.5 0.0 0.047 13.6 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit NAD_binding_4 PF07993.7 gi|410671563|ref|YP_006923934.1| - 0.027 13.4 0.2 1.8 7.4 0.0 2.1 1 1 0 2 2 2 0 Male sterility protein Acetyltransf_4 PF13420.1 gi|410671564|ref|YP_006923935.1| - 3.8e-21 75.6 0.5 4.4e-21 75.4 0.3 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|410671564|ref|YP_006923935.1| - 8.9e-08 32.4 0.0 1.2e-07 32.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|410671564|ref|YP_006923935.1| - 0.1 12.7 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain CTP_transf_3 PF02348.14 gi|410671565|ref|YP_006923936.1| - 3.3e-36 124.9 0.3 3.8e-36 124.7 0.2 1.1 1 0 0 1 1 1 1 Cytidylyltransferase IspD PF01128.14 gi|410671565|ref|YP_006923936.1| - 0.0034 16.9 0.0 0.0054 16.2 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_3 PF12804.2 gi|410671565|ref|YP_006923936.1| - 0.016 15.2 0.0 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 MobA-like NTP transferase domain CofC PF01983.11 gi|410671565|ref|YP_006923936.1| - 0.26 10.2 3.2 0.36 9.7 2.1 1.4 1 1 0 1 1 1 0 Guanylyl transferase CofC like DegT_DnrJ_EryC1 PF01041.12 gi|410671566|ref|YP_006923937.1| - 5.8e-128 426.9 0.0 6.5e-128 426.8 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|410671566|ref|YP_006923937.1| - 6.9e-12 44.9 0.1 2.8e-11 42.9 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|410671566|ref|YP_006923937.1| - 2.4e-10 39.2 0.0 3.4e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|410671566|ref|YP_006923937.1| - 1.5e-09 37.4 0.0 2.1e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|410671566|ref|YP_006923937.1| - 0.0045 15.7 0.0 0.0065 15.2 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V FdtA PF05523.6 gi|410671567|ref|YP_006923938.1| - 5.9e-12 45.2 0.2 6.7e-12 45.0 0.2 1.0 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.6 gi|410671567|ref|YP_006923938.1| - 8.9e-05 21.9 0.0 0.00073 18.9 0.0 2.0 1 1 0 1 1 1 1 Cupin domain Polysacc_synt_2 PF02719.10 gi|410671568|ref|YP_006923939.1| - 7.3e-101 336.9 0.0 8.4e-101 336.7 0.0 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.16 gi|410671568|ref|YP_006923939.1| - 1.6e-18 67.0 0.0 2.2e-17 63.2 0.0 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|410671568|ref|YP_006923939.1| - 1e-16 60.5 0.1 1.3e-15 56.8 0.0 1.9 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|410671568|ref|YP_006923939.1| - 6.8e-09 35.0 0.1 3.5e-07 29.3 0.1 2.3 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|410671568|ref|YP_006923939.1| - 2.1e-07 30.1 1.5 2.4e-05 23.4 0.6 2.9 1 1 1 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|410671568|ref|YP_006923939.1| - 1.1e-05 25.4 0.0 1.8e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|410671568|ref|YP_006923939.1| - 0.00029 20.1 0.0 0.00042 19.6 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.1 gi|410671568|ref|YP_006923939.1| - 0.00037 20.5 0.0 0.00058 19.9 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|410671568|ref|YP_006923939.1| - 0.0088 15.0 0.0 0.016 14.2 0.0 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase KR PF08659.5 gi|410671568|ref|YP_006923939.1| - 0.088 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 KR domain Glyco_trans_1_4 PF13692.1 gi|410671569|ref|YP_006923940.1| - 0.00059 19.9 0.0 0.0011 19.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF2935 PF11155.3 gi|410671569|ref|YP_006923940.1| - 0.018 15.0 1.5 0.11 12.6 0.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF2935) Epimerase PF01370.16 gi|410671570|ref|YP_006923941.1| - 2.8e-32 112.0 0.2 3.6e-32 111.6 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|410671570|ref|YP_006923941.1| - 4.6e-07 29.0 0.1 8.5e-07 28.1 0.0 1.5 2 0 0 2 2 2 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|410671570|ref|YP_006923941.1| - 0.00045 19.0 0.4 0.0099 14.6 0.0 2.1 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|410671570|ref|YP_006923941.1| - 0.0062 15.4 0.0 0.009 14.9 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein YjeF_N PF03853.10 gi|410671570|ref|YP_006923941.1| - 0.025 14.1 0.1 0.28 10.7 0.0 2.1 2 0 0 2 2 2 0 YjeF-related protein N-terminus Methyltransf_23 PF13489.1 gi|410671571|ref|YP_006923942.1| - 4.1e-07 29.8 0.0 8.7e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|410671571|ref|YP_006923942.1| - 8e-05 22.2 1.0 0.0019 17.7 0.0 3.1 3 1 0 3 3 3 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|410671571|ref|YP_006923942.1| - 0.00037 20.9 0.0 0.0012 19.2 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|410671571|ref|YP_006923942.1| - 0.00098 19.5 0.0 0.0034 17.8 0.0 2.0 1 0 0 1 1 1 1 Methyltransferase domain RNA_lig_T4_1 PF09511.5 gi|410671571|ref|YP_006923942.1| - 0.1 12.0 0.8 0.23 10.9 0.1 1.8 2 0 0 2 2 2 0 RNA ligase Methyltransf_18 PF12847.2 gi|410671571|ref|YP_006923942.1| - 0.14 12.7 0.0 0.65 10.5 0.0 2.1 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_14 PF08484.6 gi|410671572|ref|YP_006923943.1| - 8.6e-55 184.6 0.0 1.3e-54 184.0 0.0 1.3 1 0 0 1 1 1 1 C-methyltransferase C-terminal domain Methyltransf_13 PF08421.6 gi|410671572|ref|YP_006923943.1| - 1.5e-16 59.5 0.0 3.1e-16 58.6 0.0 1.5 1 0 0 1 1 1 1 Putative zinc binding domain Methyltransf_23 PF13489.1 gi|410671572|ref|YP_006923943.1| - 2.7e-12 46.7 0.0 6.7e-12 45.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|410671572|ref|YP_006923943.1| - 0.00028 21.3 0.0 0.0014 19.0 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain Polysacc_synt_C PF14667.1 gi|410671573|ref|YP_006923944.1| - 9.9e-24 83.7 21.8 9.9e-24 83.7 15.1 4.2 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.12 gi|410671573|ref|YP_006923944.1| - 3.4e-22 79.0 31.3 3.4e-22 79.0 21.7 2.4 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|410671573|ref|YP_006923944.1| - 8.5e-13 48.3 32.5 8.5e-13 48.3 22.5 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|410671573|ref|YP_006923944.1| - 2.5e-12 45.9 39.5 2.8e-12 45.7 26.7 1.6 1 1 0 1 1 1 1 MviN-like protein Epimerase PF01370.16 gi|410671574|ref|YP_006923945.1| - 1.7e-71 240.4 0.1 2.1e-71 240.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|410671574|ref|YP_006923945.1| - 2.6e-07 29.8 0.0 4.8e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|410671574|ref|YP_006923945.1| - 4.6e-05 22.4 0.0 6.7e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase_Csub PF13950.1 gi|410671574|ref|YP_006923945.1| - 0.00089 19.1 0.0 0.0021 17.9 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit adh_short PF00106.20 gi|410671574|ref|YP_006923945.1| - 0.037 13.9 0.0 0.055 13.3 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Epimerase PF01370.16 gi|410671575|ref|YP_006923946.1| - 1.1e-49 169.0 0.0 1.3e-49 168.8 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|410671575|ref|YP_006923946.1| - 2.4e-12 46.1 0.0 3.1e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|410671575|ref|YP_006923946.1| - 9.8e-12 44.3 0.0 1.6e-11 43.6 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|410671575|ref|YP_006923946.1| - 1.2e-09 37.4 0.0 9.9e-05 21.3 0.0 2.3 1 1 1 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|410671575|ref|YP_006923946.1| - 1.9e-09 36.8 0.0 0.00011 21.2 0.0 2.7 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|410671575|ref|YP_006923946.1| - 0.0024 17.8 0.0 0.0052 16.7 0.0 1.5 2 0 0 2 2 2 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|410671575|ref|YP_006923946.1| - 0.012 15.5 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|410671575|ref|YP_006923946.1| - 0.022 14.1 0.0 0.035 13.4 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Methyltransf_31 PF13847.1 gi|410671575|ref|YP_006923946.1| - 0.046 13.3 0.0 0.072 12.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain KR PF08659.5 gi|410671575|ref|YP_006923946.1| - 0.081 12.5 0.0 0.51 9.9 0.0 2.2 3 0 0 3 3 3 0 KR domain TrkA_N PF02254.13 gi|410671575|ref|YP_006923946.1| - 0.14 12.1 0.0 0.38 10.7 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain NTP_transferase PF00483.18 gi|410671576|ref|YP_006923947.1| - 1.6e-35 122.6 0.0 1.9e-35 122.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|410671576|ref|YP_006923947.1| - 2.8e-11 43.7 0.0 4e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|410671576|ref|YP_006923947.1| - 0.00021 20.8 0.0 0.00033 20.2 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.7 gi|410671576|ref|YP_006923947.1| - 0.035 12.6 2.2 0.062 11.8 1.5 1.4 1 0 0 1 1 1 0 L-fucokinase Hexapep PF00132.19 gi|410671576|ref|YP_006923947.1| - 0.34 10.4 6.2 5.3 6.7 0.0 3.9 2 1 2 4 4 4 0 Bacterial transferase hexapeptide (six repeats) MannoseP_isomer PF01050.13 gi|410671577|ref|YP_006923948.1| - 1e-58 197.2 0.1 1.9e-58 196.3 0.1 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.18 gi|410671577|ref|YP_006923948.1| - 4e-51 173.6 0.0 6e-51 173.1 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.6 gi|410671577|ref|YP_006923948.1| - 5.6e-10 38.5 0.0 1.4e-09 37.2 0.0 1.7 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.2 gi|410671577|ref|YP_006923948.1| - 1.3e-07 31.7 0.0 2.2e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|410671577|ref|YP_006923948.1| - 0.0045 16.5 0.0 0.01 15.3 0.0 1.5 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Cupin_6 PF12852.2 gi|410671577|ref|YP_006923948.1| - 0.069 12.7 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Cupin OrfB_IS605 PF01385.14 gi|410671578|ref|YP_006923949.1| - 1.2e-49 168.8 4.1 1.2e-49 168.8 2.9 1.5 2 0 0 2 2 2 1 Probable transposase HTH_OrfB_IS605 PF12323.3 gi|410671578|ref|YP_006923949.1| - 3.1e-23 80.8 1.8 8e-23 79.5 1.3 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.6 gi|410671578|ref|YP_006923949.1| - 1.6e-20 72.5 0.3 3e-20 71.6 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Phage_HK97_TLTM PF06120.6 gi|410671578|ref|YP_006923949.1| - 0.0022 17.4 0.7 0.0034 16.7 0.1 1.5 2 0 0 2 2 2 1 Tail length tape measure protein DUF2296 PF10058.4 gi|410671578|ref|YP_006923949.1| - 0.019 14.6 1.0 0.11 12.3 1.1 1.8 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Nepo_coat_C PF03688.9 gi|410671578|ref|YP_006923949.1| - 0.064 12.8 0.2 3.1 7.3 0.0 2.5 2 0 0 2 2 2 0 Nepovirus coat protein, C-terminal domain zf-Sec23_Sec24 PF04810.10 gi|410671578|ref|YP_006923949.1| - 0.56 9.8 6.3 18 4.9 0.3 2.6 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger Rep_fac-A_C PF08646.5 gi|410671578|ref|YP_006923949.1| - 0.86 9.2 8.3 0.49 10.0 0.1 3.0 3 1 1 4 4 4 0 Replication factor-A C terminal domain NAD_binding_1 PF00175.16 gi|410671579|ref|YP_006923950.1| - 5.9e-17 62.2 0.0 1.2e-16 61.2 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|410671579|ref|YP_006923950.1| - 1.2e-12 47.1 2.3 1.2e-12 47.1 1.6 1.6 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Fer2_3 PF13085.1 gi|410671579|ref|YP_006923950.1| - 0.056 13.2 0.6 0.15 11.9 0.2 1.8 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Fer4_20 PF14691.1 gi|410671580|ref|YP_006923951.1| - 1.3e-43 147.1 5.4 2e-43 146.5 3.8 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.9 gi|410671580|ref|YP_006923951.1| - 4.3e-20 72.4 8.0 3.3e-17 63.0 5.6 4.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|410671580|ref|YP_006923951.1| - 2.3e-14 53.9 0.5 5.3e-05 23.3 0.0 3.2 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|410671580|ref|YP_006923951.1| - 8.3e-12 45.3 7.4 7.4e-06 26.2 0.7 3.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|410671580|ref|YP_006923951.1| - 5.5e-09 35.9 0.2 5.5e-09 35.9 0.1 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|410671580|ref|YP_006923951.1| - 1.6e-08 34.7 1.7 0.0016 18.6 0.0 2.8 3 0 0 3 3 2 2 Putative NAD(P)-binding GIDA PF01134.17 gi|410671580|ref|YP_006923951.1| - 4e-08 32.5 2.9 3.7e-05 22.7 0.1 3.1 3 0 0 3 3 3 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|410671580|ref|YP_006923951.1| - 2.8e-06 26.6 1.7 8.1e-06 25.0 0.1 2.2 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|410671580|ref|YP_006923951.1| - 6.8e-06 24.7 0.9 6.8e-06 24.7 0.6 2.7 3 0 0 3 3 3 1 HI0933-like protein Shikimate_DH PF01488.15 gi|410671580|ref|YP_006923951.1| - 9.2e-06 25.8 1.1 0.087 12.9 0.1 3.9 4 0 0 4 4 4 2 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.16 gi|410671580|ref|YP_006923951.1| - 1.1e-05 25.0 3.2 0.0006 19.4 0.2 3.2 3 1 1 4 4 3 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.19 gi|410671580|ref|YP_006923951.1| - 1.8e-05 23.7 2.7 1.8e-05 23.7 1.9 3.0 3 0 0 3 3 3 1 FAD binding domain FAD_oxidored PF12831.2 gi|410671580|ref|YP_006923951.1| - 1.9e-05 23.9 5.6 0.0003 19.9 0.2 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|410671580|ref|YP_006923951.1| - 3e-05 23.4 0.3 0.011 15.0 0.1 2.7 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.19 gi|410671580|ref|YP_006923951.1| - 9.1e-05 21.5 1.7 9.1e-05 21.5 1.2 3.1 3 0 0 3 3 3 1 FAD dependent oxidoreductase F420_oxidored PF03807.12 gi|410671580|ref|YP_006923951.1| - 0.00014 22.2 3.3 0.35 11.3 0.4 3.4 2 1 0 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.14 gi|410671580|ref|YP_006923951.1| - 0.00046 19.3 2.3 0.00071 18.7 0.3 1.9 2 0 0 2 2 2 1 FAD binding domain ELFV_dehydrog PF00208.16 gi|410671580|ref|YP_006923951.1| - 0.001 18.7 0.0 0.12 11.9 0.0 2.4 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Amino_oxidase PF01593.19 gi|410671580|ref|YP_006923951.1| - 0.0014 17.8 5.8 0.0016 17.6 0.3 2.2 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.1 gi|410671580|ref|YP_006923951.1| - 0.0015 18.3 0.4 0.044 13.5 0.2 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding FMO-like PF00743.14 gi|410671580|ref|YP_006923951.1| - 0.0018 16.5 0.0 0.94 7.5 0.0 2.2 2 0 0 2 2 2 2 Flavin-binding monooxygenase-like TrkA_N PF02254.13 gi|410671580|ref|YP_006923951.1| - 0.0049 16.8 1.0 3.3 7.7 0.0 3.1 3 0 0 3 3 3 1 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|410671580|ref|YP_006923951.1| - 0.0096 15.6 2.9 0.031 14.0 0.3 2.6 3 0 0 3 3 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Rossmann-like PF10727.4 gi|410671580|ref|YP_006923951.1| - 0.0098 15.6 0.2 0.026 14.2 0.0 1.8 2 0 0 2 2 1 1 Rossmann-like domain Oxidored_nitro PF00148.14 gi|410671580|ref|YP_006923951.1| - 0.011 14.4 0.4 0.16 10.5 0.1 2.1 1 1 1 2 2 2 0 Nitrogenase component 1 type Oxidoreductase 2-Hacid_dh_C PF02826.14 gi|410671580|ref|YP_006923951.1| - 0.012 14.7 0.3 4.4 6.4 0.0 2.4 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K_oxygenase PF13434.1 gi|410671580|ref|YP_006923951.1| - 0.013 14.4 0.0 2.2 7.1 0.0 2.6 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.13 gi|410671580|ref|YP_006923951.1| - 0.018 14.6 3.5 0.045 13.4 0.3 2.7 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|410671580|ref|YP_006923951.1| - 0.021 14.9 0.3 1.3 9.1 0.0 2.4 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Fer4_7 PF12838.2 gi|410671580|ref|YP_006923951.1| - 0.031 14.6 0.8 0.031 14.6 0.6 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain ApbA PF02558.11 gi|410671580|ref|YP_006923951.1| - 0.035 13.5 0.3 0.089 12.2 0.2 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|410671580|ref|YP_006923951.1| - 0.042 13.8 7.8 1.4 8.8 0.9 3.6 4 0 0 4 4 3 0 NADH(P)-binding Fer4_18 PF13746.1 gi|410671580|ref|YP_006923951.1| - 0.051 14.0 0.4 0.051 14.0 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain DJ-1_PfpI PF01965.19 gi|410671580|ref|YP_006923951.1| - 0.072 12.5 1.7 0.55 9.6 0.0 2.8 4 0 0 4 4 3 0 DJ-1/PfpI family Trp_halogenase PF04820.9 gi|410671580|ref|YP_006923951.1| - 0.073 11.6 1.8 0.084 11.4 0.0 1.8 2 0 0 2 2 2 0 Tryptophan halogenase ThiF PF00899.16 gi|410671580|ref|YP_006923951.1| - 0.32 10.8 4.0 1.9 8.3 0.3 2.8 3 0 0 3 3 2 0 ThiF family Fer4_4 PF12800.2 gi|410671580|ref|YP_006923951.1| - 1.6 9.2 9.1 0.34 11.3 1.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|410671580|ref|YP_006923951.1| - 2.6 8.3 10.3 0.45 10.8 1.9 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Lycopene_cycl PF05834.7 gi|410671580|ref|YP_006923951.1| - 5.9 5.6 7.1 0.26 10.1 0.5 1.9 3 0 0 3 3 2 0 Lycopene cyclase protein Fer4_8 PF13183.1 gi|410671580|ref|YP_006923951.1| - 9.1 6.4 10.4 0.42 10.6 1.5 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain PAPS_reduct PF01507.14 gi|410671581|ref|YP_006923952.1| - 2.2e-41 141.6 0.0 3e-41 141.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_10 PF13237.1 gi|410671581|ref|YP_006923952.1| - 2e-07 30.7 7.6 2e-07 30.7 5.3 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410671581|ref|YP_006923952.1| - 6e-07 29.7 10.9 6e-07 29.7 7.6 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|410671581|ref|YP_006923952.1| - 9.3e-07 28.1 3.7 9.3e-07 28.1 2.6 3.7 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|410671581|ref|YP_006923952.1| - 6.2e-06 26.3 9.4 6.2e-06 26.3 6.5 3.3 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410671581|ref|YP_006923952.1| - 0.00019 21.2 0.2 0.00019 21.2 0.2 4.9 5 1 1 6 6 5 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410671581|ref|YP_006923952.1| - 0.0004 21.0 0.9 0.0004 21.0 0.7 3.6 3 1 1 4 4 3 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|410671581|ref|YP_006923952.1| - 0.00043 20.0 4.0 0.00043 20.0 2.8 3.2 4 0 0 4 4 2 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|410671581|ref|YP_006923952.1| - 0.0021 18.4 0.1 0.0021 18.4 0.1 3.1 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410671581|ref|YP_006923952.1| - 0.0022 17.8 3.4 0.0022 17.8 2.4 4.3 5 1 0 5 5 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|410671581|ref|YP_006923952.1| - 0.0055 16.7 11.9 0.0055 16.7 8.3 3.7 3 2 1 4 4 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|410671581|ref|YP_006923952.1| - 0.016 15.6 6.8 0.016 15.6 4.7 4.1 5 0 0 5 5 3 0 4Fe-4S binding domain PUA PF01472.15 gi|410671581|ref|YP_006923952.1| - 0.024 14.3 0.1 0.056 13.1 0.1 1.6 1 0 0 1 1 1 0 PUA domain ATP_bind_3 PF01171.15 gi|410671581|ref|YP_006923952.1| - 0.049 13.1 0.0 0.089 12.2 0.0 1.4 1 0 0 1 1 1 0 PP-loop family PCAF_N PF06466.6 gi|410671581|ref|YP_006923952.1| - 0.092 12.0 0.5 0.25 10.6 0.0 1.8 2 0 0 2 2 2 0 PCAF (P300/CBP-associated factor) N-terminal domain Fer4_4 PF12800.2 gi|410671581|ref|YP_006923952.1| - 9.1 6.9 29.2 0.042 14.1 1.8 3.8 3 0 0 3 3 2 0 4Fe-4S binding domain UPF0118 PF01594.11 gi|410671582|ref|YP_006923953.1| - 1.4e-35 122.8 39.6 1.7e-35 122.5 27.5 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 tRNA-Thr_ED PF08915.6 gi|410671583|ref|YP_006923954.1| - 3.4e-54 182.5 0.0 6.5e-54 181.6 0.0 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|410671583|ref|YP_006923954.1| - 3.3e-23 82.1 1.5 5.7e-23 81.3 1.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|410671583|ref|YP_006923954.1| - 1.4e-18 66.6 0.8 3.1e-18 65.5 0.5 1.6 1 0 0 1 1 1 1 Anticodon binding domain Acylphosphatase PF00708.13 gi|410671584|ref|YP_006923955.1| - 1.8e-23 82.4 0.0 2.1e-23 82.1 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase ThiI PF02568.9 gi|410671585|ref|YP_006923956.1| - 4.7e-56 189.3 0.0 6.5e-56 188.9 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|410671585|ref|YP_006923956.1| - 6.1e-18 65.0 0.0 9.6e-17 61.2 0.0 2.1 2 0 0 2 2 2 1 THUMP domain QueC PF06508.8 gi|410671585|ref|YP_006923956.1| - 7.9e-05 22.0 0.0 0.041 13.1 0.0 2.5 1 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|410671585|ref|YP_006923956.1| - 0.00033 19.3 0.0 0.00079 18.0 0.0 1.6 2 0 0 2 2 2 1 tRNA methyl transferase Arch_fla_DE PF04659.8 gi|410671587|ref|YP_006923958.1| - 5.1e-28 96.8 0.2 1.3e-27 95.5 0.1 1.7 1 0 0 1 1 1 1 Archaeal flagella protein GAS PF13851.1 gi|410671587|ref|YP_006923958.1| - 0.00086 18.5 0.1 0.0032 16.6 0.0 1.9 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding PspA_IM30 PF04012.7 gi|410671587|ref|YP_006923958.1| - 0.0031 16.9 0.6 0.0086 15.4 0.4 1.6 1 1 0 1 1 1 1 PspA/IM30 family WEMBL PF05701.6 gi|410671587|ref|YP_006923958.1| - 0.0049 15.3 0.2 0.0077 14.7 0.2 1.2 1 0 0 1 1 1 1 Weak chloroplast movement under blue light DUF3584 PF12128.3 gi|410671587|ref|YP_006923958.1| - 0.0065 13.8 0.3 0.0086 13.4 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Laminin_II PF06009.7 gi|410671587|ref|YP_006923958.1| - 0.02 14.6 1.9 0.18 11.5 0.3 2.6 2 1 1 3 3 2 0 Laminin Domain II FlaC_arch PF05377.6 gi|410671587|ref|YP_006923958.1| - 0.056 13.3 1.5 0.67 9.8 0.2 3.3 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) DUF302 PF03625.9 gi|410671587|ref|YP_006923958.1| - 0.066 12.7 0.1 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF302 DUF869 PF05911.6 gi|410671587|ref|YP_006923958.1| - 0.078 11.2 4.3 0.1 10.7 3.0 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) Nup54 PF13874.1 gi|410671587|ref|YP_006923958.1| - 0.079 12.6 0.8 5.3 6.7 0.1 2.4 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Baculo_PEP_C PF04513.7 gi|410671587|ref|YP_006923958.1| - 0.085 12.6 0.3 0.71 9.6 0.1 2.4 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1216 PF06746.6 gi|410671587|ref|YP_006923958.1| - 0.11 12.2 3.3 4.6 7.0 0.0 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1216) Tropomyosin_1 PF12718.2 gi|410671587|ref|YP_006923958.1| - 0.14 12.0 0.2 1.3 8.9 0.0 2.2 1 1 0 2 2 2 0 Tropomyosin like MitMem_reg PF13012.1 gi|410671587|ref|YP_006923958.1| - 0.26 11.4 1.5 0.83 9.7 0.3 2.2 1 1 0 2 2 2 0 Maintenance of mitochondrial structure and function DUF972 PF06156.8 gi|410671587|ref|YP_006923958.1| - 0.29 11.5 2.2 14 6.0 0.3 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF972) Reo_sigmaC PF04582.7 gi|410671587|ref|YP_006923958.1| - 0.3 10.2 7.6 0.95 8.5 0.3 2.5 1 1 0 2 2 2 0 Reovirus sigma C capsid protein IncA PF04156.9 gi|410671587|ref|YP_006923958.1| - 0.53 9.8 4.3 1.2 8.6 1.0 2.5 1 1 2 3 3 3 0 IncA protein ATG16 PF08614.6 gi|410671587|ref|YP_006923958.1| - 0.76 9.5 3.1 0.5 10.1 0.3 1.9 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) DUF4013 PF13197.1 gi|410671588|ref|YP_006923959.1| - 0.00042 19.7 11.6 0.00042 19.7 8.0 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) DUF975 PF06161.6 gi|410671588|ref|YP_006923959.1| - 0.00085 19.1 14.7 0.0053 16.5 3.0 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF975) GPDPase_memb PF10110.4 gi|410671588|ref|YP_006923959.1| - 0.0015 18.0 1.9 0.0015 18.0 1.3 3.3 2 1 2 4 4 4 1 Membrane domain of glycerophosphoryl diester phosphodiesterase DUF1673 PF07895.6 gi|410671588|ref|YP_006923959.1| - 0.087 12.3 4.8 0.038 13.5 1.7 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1673) DUF3533 PF12051.3 gi|410671588|ref|YP_006923959.1| - 0.44 9.2 11.2 0.01 14.5 3.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3533) Tic20 PF09685.5 gi|410671589|ref|YP_006923960.1| - 1.4e-15 57.1 9.4 1.7e-15 56.9 6.5 1.0 1 0 0 1 1 1 1 Tic20-like protein DUF2269 PF10027.4 gi|410671589|ref|YP_006923960.1| - 0.0073 16.1 5.5 0.0086 15.8 3.8 1.1 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2269) DUF4396 PF14342.1 gi|410671589|ref|YP_006923960.1| - 0.042 13.9 3.4 0.051 13.6 2.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4396) Pox_A14 PF05767.7 gi|410671589|ref|YP_006923960.1| - 0.09 12.7 5.3 0.11 12.5 3.4 1.4 1 1 0 1 1 1 0 Poxvirus virion envelope protein A14 YfhO PF09586.5 gi|410671589|ref|YP_006923960.1| - 0.59 8.0 4.0 0.66 7.9 2.8 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO Na_Ca_ex PF01699.19 gi|410671589|ref|YP_006923960.1| - 0.83 9.2 10.3 1.1 8.8 7.2 1.2 1 0 0 1 1 1 0 Sodium/calcium exchanger protein BCLP PF12304.3 gi|410671589|ref|YP_006923960.1| - 2.3 7.5 6.0 1 8.7 2.3 1.7 1 1 1 2 2 2 0 Beta-casein like protein DUF1628 PF07790.6 gi|410671590|ref|YP_006923961.1| - 2.2e-28 98.8 1.4 2.2e-28 98.8 1.0 1.9 2 1 0 2 2 2 1 Protein of unknown function (DUF1628) Phage_integrase PF00589.17 gi|410671591|ref|YP_006923962.1| - 5e-18 65.3 0.3 4.4e-14 52.5 0.1 2.5 2 1 0 2 2 2 2 Phage integrase family zinc_ribbon_5 PF13719.1 gi|410671591|ref|YP_006923962.1| - 0.056 13.0 0.6 0.13 11.8 0.4 1.6 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|410671591|ref|YP_006923962.1| - 0.087 12.5 0.7 0.21 11.3 0.5 1.6 1 0 0 1 1 1 0 zinc-ribbon domain RHH_1 PF01402.16 gi|410671592|ref|YP_006923963.1| - 0.0021 17.8 0.0 0.0024 17.6 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|410671592|ref|YP_006923963.1| - 0.033 13.9 0.2 0.039 13.6 0.1 1.1 1 0 0 1 1 1 0 Ribbon-helix-helix domain DUF3804 PF12707.2 gi|410671593|ref|YP_006923964.1| - 0.053 13.0 0.0 0.059 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3804) Potyvirid-P3 PF13608.1 gi|410671595|ref|YP_006923966.1| - 0.094 11.8 3.4 1.3 8.0 0.9 2.1 2 0 0 2 2 2 0 Protein P3 of Potyviral polyprotein RHH_1 PF01402.16 gi|410671596|ref|YP_006923967.1| - 0.045 13.6 0.0 0.082 12.8 0.0 1.4 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family MarR_2 PF12802.2 gi|410671598|ref|YP_006923969.1| - 0.00012 21.7 0.0 0.00021 20.9 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|410671598|ref|YP_006923969.1| - 0.00045 19.8 0.2 0.0021 17.6 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|410671598|ref|YP_006923969.1| - 0.00085 18.9 0.0 0.0016 18.1 0.0 1.5 1 0 0 1 1 1 1 MarR family RNA_pol_Rpb4 PF03874.11 gi|410671598|ref|YP_006923969.1| - 0.0065 16.4 0.3 0.012 15.5 0.2 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb4 B-block_TFIIIC PF04182.7 gi|410671598|ref|YP_006923969.1| - 0.013 15.3 0.0 0.032 14.0 0.0 1.6 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC IBD PF10416.4 gi|410671598|ref|YP_006923969.1| - 0.017 14.9 1.0 0.13 12.0 0.0 2.4 2 1 0 2 2 2 0 Transcription-initiator DNA-binding domain IBD TF_Zn_Ribbon PF08271.7 gi|410671598|ref|YP_006923969.1| - 0.017 14.4 0.3 0.045 13.0 0.1 1.8 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|410671598|ref|YP_006923969.1| - 0.019 14.7 2.9 0.05 13.4 2.0 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF2190 PF09956.4 gi|410671598|ref|YP_006923969.1| - 0.029 14.1 0.0 0.054 13.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2190) DUF1878 PF08963.5 gi|410671598|ref|YP_006923969.1| - 0.14 12.3 0.9 0.37 11.0 0.3 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1878) zf-Mss51 PF13824.1 gi|410671598|ref|YP_006923969.1| - 0.16 11.8 1.4 0.49 10.2 0.9 1.9 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 dTDP_sugar_isom PF00908.12 gi|410671600|ref|YP_006923971.1| - 1.5e-69 232.8 0.0 1.7e-69 232.6 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Epimerase PF01370.16 gi|410671601|ref|YP_006923972.1| - 3.1e-65 219.8 0.0 4.1e-65 219.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|410671601|ref|YP_006923972.1| - 2e-24 85.7 0.0 2.8e-24 85.3 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|410671601|ref|YP_006923972.1| - 1.4e-21 76.7 0.0 1.6e-20 73.2 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|410671601|ref|YP_006923972.1| - 1.6e-18 66.6 0.0 4.2e-18 65.2 0.0 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|410671601|ref|YP_006923972.1| - 9.3e-17 60.7 0.0 9e-16 57.5 0.0 2.0 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|410671601|ref|YP_006923972.1| - 4.3e-08 33.3 0.0 7e-08 32.6 0.0 1.3 1 1 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|410671601|ref|YP_006923972.1| - 6e-06 25.6 0.0 9.5e-06 25.0 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|410671601|ref|YP_006923972.1| - 0.0048 16.8 0.0 0.015 15.2 0.0 1.7 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|410671601|ref|YP_006923972.1| - 0.01 15.5 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 KR domain TrkA_N PF02254.13 gi|410671601|ref|YP_006923972.1| - 0.039 13.9 0.0 0.067 13.1 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain RmlD_sub_bind PF04321.12 gi|410671602|ref|YP_006923973.1| - 2.7e-89 298.8 0.0 3.2e-89 298.6 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|410671602|ref|YP_006923973.1| - 4.8e-15 55.6 0.3 5.9e-14 52.0 0.2 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|410671602|ref|YP_006923973.1| - 1.3e-06 27.5 0.8 0.00011 21.2 0.0 3.0 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|410671602|ref|YP_006923973.1| - 1.3e-05 24.2 0.0 2.1e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein NTP_transferase PF00483.18 gi|410671603|ref|YP_006923974.1| - 3.7e-57 193.4 0.0 4.1e-57 193.3 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|410671603|ref|YP_006923974.1| - 4.3e-13 49.6 0.0 4.9e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|410671603|ref|YP_006923974.1| - 0.02 14.4 0.0 0.084 12.3 0.0 1.9 1 1 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|410671603|ref|YP_006923974.1| - 0.063 12.9 0.0 0.15 11.6 0.0 1.6 2 0 0 2 2 2 0 Cytidylyltransferase Polysacc_synt_3 PF13440.1 gi|410671604|ref|YP_006923975.1| - 6.7e-18 65.0 39.3 7e-12 45.3 14.7 2.1 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt PF01943.12 gi|410671604|ref|YP_006923975.1| - 6.1e-17 61.7 34.1 6.1e-17 61.7 23.6 2.0 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|410671604|ref|YP_006923975.1| - 0.012 15.4 51.1 0.012 15.4 7.3 4.3 3 1 1 4 4 4 0 Polysaccharide biosynthesis C-terminal domain Hexapep PF00132.19 gi|410671606|ref|YP_006923977.1| - 1.5e-09 36.9 17.7 2.9e-09 36.0 3.7 3.5 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|410671606|ref|YP_006923977.1| - 0.00038 19.9 14.5 0.0029 17.1 3.8 3.5 3 1 1 4 4 4 2 Hexapeptide repeat of succinyl-transferase NTP_transf_2 PF01909.18 gi|410671607|ref|YP_006923978.1| - 0.0083 16.4 0.0 0.025 14.8 0.0 1.8 2 0 0 2 2 2 1 Nucleotidyltransferase domain DAGK_prokar PF01219.14 gi|410671607|ref|YP_006923978.1| - 0.043 13.4 0.5 0.076 12.6 0.3 1.4 1 0 0 1 1 1 0 Prokaryotic diacylglycerol kinase Thymidylate_kin PF02223.12 gi|410671608|ref|YP_006923979.1| - 3e-08 33.2 1.8 3.2e-05 23.4 0.1 2.2 2 0 0 2 2 2 2 Thymidylate kinase AAA_18 PF13238.1 gi|410671608|ref|YP_006923979.1| - 0.00022 21.5 0.1 0.00088 19.5 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|410671608|ref|YP_006923979.1| - 0.00022 22.0 0.7 0.0012 19.6 0.2 2.3 1 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|410671608|ref|YP_006923979.1| - 0.0004 20.1 0.2 0.00074 19.2 0.1 1.4 1 0 0 1 1 1 1 NTPase AAA_14 PF13173.1 gi|410671608|ref|YP_006923979.1| - 0.002 18.0 0.4 0.038 13.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|410671608|ref|YP_006923979.1| - 0.0023 17.6 0.0 0.0042 16.7 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|410671608|ref|YP_006923979.1| - 0.0027 17.7 0.0 0.0041 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain ArgK PF03308.11 gi|410671608|ref|YP_006923979.1| - 0.0096 14.7 0.0 0.017 13.9 0.0 1.3 1 0 0 1 1 1 1 ArgK protein AAA_28 PF13521.1 gi|410671608|ref|YP_006923979.1| - 0.015 15.2 0.2 0.11 12.5 0.0 2.1 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|410671608|ref|YP_006923979.1| - 0.027 14.4 0.3 0.073 13.0 0.2 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.17 gi|410671608|ref|YP_006923979.1| - 0.035 13.5 0.1 0.083 12.3 0.1 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|410671608|ref|YP_006923979.1| - 0.042 14.0 0.0 0.077 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|410671608|ref|YP_006923979.1| - 0.058 12.9 0.0 0.099 12.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RNA_helicase PF00910.17 gi|410671608|ref|YP_006923979.1| - 0.059 13.5 0.0 1.2 9.3 0.0 2.3 2 0 0 2 2 2 0 RNA helicase NACHT PF05729.7 gi|410671608|ref|YP_006923979.1| - 0.11 12.0 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Glycos_transf_1 PF00534.15 gi|410671609|ref|YP_006923980.1| - 4.4e-23 81.5 0.0 9.4e-23 80.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|410671609|ref|YP_006923980.1| - 1.7e-17 63.8 0.0 3.8e-17 62.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|410671609|ref|YP_006923980.1| - 5.9e-05 23.2 0.0 0.00017 21.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|410671609|ref|YP_006923980.1| - 0.003 17.3 0.2 0.11 12.3 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|410671609|ref|YP_006923980.1| - 0.029 14.0 0.0 0.069 12.8 0.0 1.6 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|410671610|ref|YP_006923981.1| - 3.2e-41 140.5 0.0 5.8e-41 139.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|410671610|ref|YP_006923981.1| - 3.2e-20 72.6 0.1 4.5e-20 72.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|410671610|ref|YP_006923981.1| - 4e-17 62.6 0.0 2e-16 60.3 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|410671610|ref|YP_006923981.1| - 4.8e-15 56.0 0.0 7.1e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|410671610|ref|YP_006923981.1| - 1.1e-09 38.3 0.0 2.4e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|410671610|ref|YP_006923981.1| - 1.3e-09 38.0 1.8 2.5e-09 37.0 0.7 1.8 1 1 1 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|410671610|ref|YP_006923981.1| - 0.002 17.6 0.1 2.6 7.4 0.0 3.1 1 1 2 3 3 3 2 Starch synthase catalytic domain PP-binding_2 PF14573.1 gi|410671610|ref|YP_006923981.1| - 0.046 13.7 0.0 0.21 11.6 0.0 2.1 2 0 0 2 2 2 0 Acyl-carrier Band_7 PF01145.20 gi|410671610|ref|YP_006923981.1| - 0.063 13.1 0.0 0.17 11.7 0.0 1.7 2 0 0 2 2 2 0 SPFH domain / Band 7 family Glyco_tran_28_C PF04101.11 gi|410671611|ref|YP_006923982.1| - 9.6e-29 100.1 0.2 1.2e-28 99.9 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_1_3 PF13528.1 gi|410671611|ref|YP_006923982.1| - 0.002 17.3 0.0 0.0031 16.7 0.0 1.3 1 1 0 1 1 1 1 Glycosyl transferase family 1 Alpha-amyl_C2 PF07821.7 gi|410671611|ref|YP_006923982.1| - 0.025 14.4 0.0 0.061 13.1 0.0 1.6 2 0 0 2 2 2 0 Alpha-amylase C-terminal beta-sheet domain Alg14 PF08660.6 gi|410671612|ref|YP_006923983.1| - 3.4e-28 98.7 0.0 3.8e-28 98.5 0.0 1.1 1 0 0 1 1 1 1 Oligosaccharide biosynthesis protein Alg14 like Glyco_transf_28 PF03033.15 gi|410671612|ref|YP_006923983.1| - 0.0054 16.5 0.0 0.007 16.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain PIGA PF08288.7 gi|410671612|ref|YP_006923983.1| - 0.13 12.5 0.0 0.2 12.0 0.0 1.3 1 0 0 1 1 1 0 PIGA (GPI anchor biosynthesis) Glycos_transf_2 PF00535.21 gi|410671613|ref|YP_006923984.1| - 1.1e-31 109.7 0.0 1.9e-31 109.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|410671613|ref|YP_006923984.1| - 3e-27 95.9 0.0 4.5e-27 95.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|410671613|ref|YP_006923984.1| - 2.3e-11 43.7 0.0 3.6e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|410671613|ref|YP_006923984.1| - 5.1e-08 32.3 0.0 8.5e-08 31.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|410671613|ref|YP_006923984.1| - 1.4e-07 30.9 0.0 4.4e-07 29.3 0.0 1.8 2 1 0 2 2 2 1 Glycosyltransferase like family Glyco_transf_21 PF13506.1 gi|410671613|ref|YP_006923984.1| - 3.8e-06 26.3 0.0 6e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_transf_7C PF02709.9 gi|410671613|ref|YP_006923984.1| - 3.2e-05 23.2 0.0 6.7e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Gemini_AL1_M PF08283.6 gi|410671613|ref|YP_006923984.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Geminivirus rep protein central domain Glycos_transf_2 PF00535.21 gi|410671614|ref|YP_006923985.1| - 8.6e-20 71.0 0.0 1.3e-19 70.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|410671614|ref|YP_006923985.1| - 2.9e-05 23.9 0.1 4.2e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|410671614|ref|YP_006923985.1| - 9.5e-05 22.6 0.0 0.00016 21.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF373 PF04123.8 gi|410671614|ref|YP_006923985.1| - 0.0068 15.4 1.6 0.0068 15.4 1.1 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF373) DUF374 PF04028.8 gi|410671614|ref|YP_006923985.1| - 0.018 14.2 0.0 0.041 13.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF374) NfeD PF01957.13 gi|410671614|ref|YP_006923985.1| - 0.63 10.1 3.8 1.3 9.1 2.6 1.5 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF457 PF04307.9 gi|410671615|ref|YP_006923986.1| - 5.3e-12 45.3 3.9 6.1e-12 45.1 2.7 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Phage_integrase PF00589.17 gi|410671616|ref|YP_006923987.1| - 8.3e-28 97.1 0.0 9.5e-28 97.0 0.0 1.0 1 0 0 1 1 1 1 Phage integrase family B3 PF02362.16 gi|410671616|ref|YP_006923987.1| - 0.084 12.5 0.0 0.59 9.8 0.0 2.1 2 0 0 2 2 2 0 B3 DNA binding domain zf-Dof PF02701.10 gi|410671617|ref|YP_006923988.1| - 0.13 12.1 0.1 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 Dof domain, zinc finger YvbH_ext PF11724.3 gi|410671618|ref|YP_006923989.1| - 0.049 13.3 0.3 0.082 12.5 0.0 1.6 2 0 0 2 2 2 0 YvbH-like oligomerisation region Adaptin_N PF01602.15 gi|410671620|ref|YP_006923991.1| - 0.00048 18.5 0.2 0.00056 18.3 0.1 1.1 1 0 0 1 1 1 1 Adaptin N terminal region DDE_3 PF13358.1 gi|410671623|ref|YP_006923994.1| - 1.1e-24 86.8 0.5 2.4e-24 85.7 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_29 PF13551.1 gi|410671623|ref|YP_006923994.1| - 2e-16 60.1 0.0 5.6e-16 58.6 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410671623|ref|YP_006923994.1| - 2.2e-10 41.1 0.7 8.6e-10 39.2 0.0 2.3 3 0 0 3 3 3 1 Homeodomain-like domain rve PF00665.21 gi|410671623|ref|YP_006923994.1| - 6e-09 36.0 0.0 1.3e-08 34.9 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_33 PF13592.1 gi|410671623|ref|YP_006923994.1| - 1.5e-08 34.0 0.1 4.3e-08 32.5 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn helix DDE_1 PF03184.14 gi|410671623|ref|YP_006923994.1| - 6.2e-08 32.0 0.3 6.2e-08 32.0 0.2 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_23 PF13384.1 gi|410671623|ref|YP_006923994.1| - 3.3e-06 26.5 0.1 1e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|410671623|ref|YP_006923994.1| - 2.9e-05 23.9 0.0 6.4e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DDE_Tnp_ISAZ013 PF07592.6 gi|410671623|ref|YP_006923994.1| - 0.025 13.3 0.1 0.065 11.9 0.0 1.6 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HTH_21 PF13276.1 gi|410671623|ref|YP_006923994.1| - 0.092 12.7 0.1 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 HTH-like domain DUF1628 PF07790.6 gi|410671627|ref|YP_006923998.1| - 9.9e-26 90.3 4.4 1.8e-25 89.4 2.9 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1628) RHH_1 PF01402.16 gi|410671628|ref|YP_006923999.1| - 0.12 12.2 1.3 0.19 11.6 0.1 1.9 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF3024 PF11225.3 gi|410671630|ref|YP_006924001.1| - 0.062 13.1 0.1 0.064 13.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3024) ACT_6 PF13740.1 gi|410671631|ref|YP_006924002.1| - 2e-17 62.6 0.4 2.3e-17 62.4 0.3 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|410671631|ref|YP_006924002.1| - 2.1e-09 36.6 0.4 2.6e-09 36.3 0.3 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|410671631|ref|YP_006924002.1| - 0.00035 20.8 2.2 0.0006 20.1 1.2 1.6 1 1 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|410671631|ref|YP_006924002.1| - 0.0087 15.5 0.3 0.012 15.0 0.2 1.3 1 0 0 1 1 1 1 ACT domain VRR_NUC PF08774.6 gi|410671631|ref|YP_006924002.1| - 0.047 13.7 0.0 0.05 13.6 0.0 1.1 1 0 0 1 1 1 0 VRR-NUC domain Spo7 PF03907.8 gi|410671631|ref|YP_006924002.1| - 0.11 12.0 0.1 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Spo7-like protein DUF711 PF05167.7 gi|410671632|ref|YP_006924003.1| - 3e-179 595.9 3.3 3.6e-179 595.6 2.3 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) SKI PF01202.17 gi|410671633|ref|YP_006924004.1| - 2.7e-33 115.0 0.0 3.1e-33 114.8 0.0 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_17 PF13207.1 gi|410671633|ref|YP_006924004.1| - 3.8e-09 37.4 0.0 6.3e-09 36.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|410671633|ref|YP_006924004.1| - 1.1e-08 35.4 0.0 1.9e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|410671633|ref|YP_006924004.1| - 3.9e-07 30.0 0.0 8.8e-07 28.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|410671633|ref|YP_006924004.1| - 3.1e-05 23.9 0.2 0.00014 21.8 0.1 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family ADK PF00406.17 gi|410671633|ref|YP_006924004.1| - 0.00026 20.9 0.1 0.27 11.0 0.0 2.2 2 0 0 2 2 2 2 Adenylate kinase Zeta_toxin PF06414.7 gi|410671633|ref|YP_006924004.1| - 0.017 14.2 0.1 0.028 13.5 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|410671633|ref|YP_006924004.1| - 0.017 15.3 0.0 0.024 14.8 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CoaE PF01121.15 gi|410671633|ref|YP_006924004.1| - 0.025 13.9 0.2 0.051 12.9 0.1 1.6 1 0 0 1 1 1 0 Dephospho-CoA kinase AAA_16 PF13191.1 gi|410671633|ref|YP_006924004.1| - 0.036 14.0 0.1 0.052 13.5 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|410671633|ref|YP_006924004.1| - 0.063 13.4 0.1 0.067 13.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain 6PF2K PF01591.13 gi|410671633|ref|YP_006924004.1| - 0.084 11.9 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_5 PF07728.9 gi|410671633|ref|YP_006924004.1| - 0.13 12.0 0.0 0.28 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.18 gi|410671633|ref|YP_006924004.1| - 0.13 12.1 0.2 0.2 11.5 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase UPF0066 PF01980.11 gi|410671635|ref|YP_006924006.1| - 1.3e-34 118.6 0.0 1.5e-34 118.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 ABC_tran PF00005.22 gi|410671636|ref|YP_006924007.1| - 2.8e-30 105.3 0.0 3.8e-30 104.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410671636|ref|YP_006924007.1| - 1e-11 45.3 0.7 4.5e-05 23.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|410671636|ref|YP_006924007.1| - 5.2e-06 26.9 0.0 6.7e-06 26.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|410671636|ref|YP_006924007.1| - 2.4e-05 23.5 0.0 0.073 12.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|410671636|ref|YP_006924007.1| - 7.2e-05 22.0 0.0 0.00011 21.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|410671636|ref|YP_006924007.1| - 8.4e-05 22.0 0.0 0.0002 20.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|410671636|ref|YP_006924007.1| - 9.6e-05 22.5 1.5 0.0021 18.1 1.1 2.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|410671636|ref|YP_006924007.1| - 0.00012 21.4 0.4 0.018 14.2 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_14 PF13173.1 gi|410671636|ref|YP_006924007.1| - 0.00038 20.3 0.1 0.01 15.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|410671636|ref|YP_006924007.1| - 0.00099 18.6 0.1 0.12 11.8 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain Arch_ATPase PF01637.13 gi|410671636|ref|YP_006924007.1| - 0.0019 17.9 0.0 0.0029 17.3 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|410671636|ref|YP_006924007.1| - 0.0024 17.8 0.1 0.0052 16.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|410671636|ref|YP_006924007.1| - 0.0043 15.6 0.1 3.5 6.0 0.0 2.9 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_24 PF13479.1 gi|410671636|ref|YP_006924007.1| - 0.016 14.7 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|410671636|ref|YP_006924007.1| - 0.017 14.9 0.0 0.16 11.8 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|410671636|ref|YP_006924007.1| - 0.022 14.4 0.0 0.057 13.1 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain Mg_chelatase PF01078.16 gi|410671636|ref|YP_006924007.1| - 0.023 13.8 0.0 0.046 12.8 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRP54 PF00448.17 gi|410671636|ref|YP_006924007.1| - 0.024 14.0 0.0 0.058 12.8 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|410671636|ref|YP_006924007.1| - 0.035 13.8 0.1 0.068 12.8 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|410671636|ref|YP_006924007.1| - 0.042 13.5 0.1 0.085 12.5 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.1 gi|410671636|ref|YP_006924007.1| - 0.048 12.1 0.0 3 6.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|410671636|ref|YP_006924007.1| - 0.05 12.4 0.2 0.18 10.6 0.0 1.9 2 1 0 2 2 2 0 NB-ARC domain AAA_5 PF07728.9 gi|410671636|ref|YP_006924007.1| - 0.055 13.1 0.1 0.52 10.0 0.0 2.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|410671636|ref|YP_006924007.1| - 0.063 12.6 0.5 0.16 11.3 0.0 1.9 2 1 1 3 3 3 0 IstB-like ATP binding protein Rad17 PF03215.10 gi|410671636|ref|YP_006924007.1| - 0.078 11.6 0.1 0.13 10.9 0.1 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein FecCD PF01032.13 gi|410671637|ref|YP_006924008.1| - 2.2e-92 309.2 32.8 2.7e-92 308.9 22.7 1.0 1 0 0 1 1 1 1 FecCD transport family 5TM-5TMR_LYT PF07694.7 gi|410671637|ref|YP_006924008.1| - 0.0031 16.8 11.7 0.0031 16.8 8.1 3.2 2 1 0 2 2 2 1 5TMR of 5TMR-LYT Peripla_BP_2 PF01497.13 gi|410671638|ref|YP_006924009.1| - 4.6e-24 84.8 0.0 6.2e-24 84.4 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein S-layer PF07752.6 gi|410671639|ref|YP_006924010.1| - 7.1e-12 45.0 0.0 8.2e-12 44.8 0.0 1.0 1 0 0 1 1 1 1 S-layer protein S-layer PF07752.6 gi|410671640|ref|YP_006924011.1| - 1e-20 74.0 3.7 1.5e-20 73.4 0.9 1.9 2 0 0 2 2 2 1 S-layer protein FmdE PF02663.9 gi|410671642|ref|YP_006924013.1| - 1.2e-39 135.1 0.1 1.5e-39 134.8 0.1 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|410671642|ref|YP_006924013.1| - 4.5e-08 32.6 0.5 1.4e-07 31.1 0.4 1.8 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.17 gi|410671642|ref|YP_006924013.1| - 0.019 15.0 0.7 0.039 14.0 0.5 1.5 1 0 0 1 1 1 0 LIM domain OrfB_Zn_ribbon PF07282.6 gi|410671642|ref|YP_006924013.1| - 0.022 14.4 1.3 0.043 13.4 0.1 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Cauli_AT PF03233.8 gi|410671642|ref|YP_006924013.1| - 0.056 13.1 0.0 0.085 12.5 0.0 1.2 1 0 0 1 1 1 0 Aphid transmission protein DUF2284 PF10050.4 gi|410671643|ref|YP_006924014.1| - 2.6e-47 160.4 0.0 3.3e-47 160.1 0.0 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) T4_deiodinase PF00837.12 gi|410671643|ref|YP_006924014.1| - 0.013 14.5 0.0 0.019 13.9 0.0 1.2 1 0 0 1 1 1 0 Iodothyronine deiodinase AAA PF00004.24 gi|410671645|ref|YP_006924016.1| - 6.2e-44 149.3 0.7 2e-43 147.7 0.0 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|410671645|ref|YP_006924016.1| - 5e-06 26.2 0.1 1.6e-05 24.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|410671645|ref|YP_006924016.1| - 2.1e-05 24.5 0.0 0.00077 19.4 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain Leu_zip PF15294.1 gi|410671645|ref|YP_006924016.1| - 5.1e-05 22.5 1.8 8.5e-05 21.7 1.3 1.3 1 0 0 1 1 1 1 Leucine zipper RuvB_N PF05496.7 gi|410671645|ref|YP_006924016.1| - 6.9e-05 22.0 0.1 0.00026 20.1 0.0 2.0 2 1 1 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|410671645|ref|YP_006924016.1| - 7.7e-05 22.8 1.6 0.0021 18.2 0.1 2.9 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|410671645|ref|YP_006924016.1| - 0.00031 21.5 0.0 0.00074 20.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|410671645|ref|YP_006924016.1| - 0.00035 20.5 0.0 0.0011 18.8 0.0 1.9 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_14 PF13173.1 gi|410671645|ref|YP_006924016.1| - 0.00036 20.4 0.1 0.0016 18.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|410671645|ref|YP_006924016.1| - 0.00092 18.9 0.1 0.0019 17.8 0.1 1.5 1 0 0 1 1 1 1 Part of AAA domain KaiC PF06745.8 gi|410671645|ref|YP_006924016.1| - 0.0052 15.9 0.1 0.051 12.6 0.0 2.5 2 1 1 3 3 3 1 KaiC RNA_helicase PF00910.17 gi|410671645|ref|YP_006924016.1| - 0.0068 16.5 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA_28 PF13521.1 gi|410671645|ref|YP_006924016.1| - 0.0084 16.0 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|410671645|ref|YP_006924016.1| - 0.0084 15.2 0.1 0.08 12.0 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|410671645|ref|YP_006924016.1| - 0.0089 15.6 0.0 0.021 14.4 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|410671645|ref|YP_006924016.1| - 0.0097 15.3 0.1 0.099 12.1 0.0 2.5 3 0 0 3 3 3 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|410671645|ref|YP_006924016.1| - 0.011 15.8 0.0 0.077 13.0 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF815 PF05673.8 gi|410671645|ref|YP_006924016.1| - 0.011 14.6 0.0 0.024 13.5 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF815) AAA_33 PF13671.1 gi|410671645|ref|YP_006924016.1| - 0.012 15.5 0.0 0.023 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|410671645|ref|YP_006924016.1| - 0.012 14.9 0.0 0.028 13.8 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_18 PF13238.1 gi|410671645|ref|YP_006924016.1| - 0.013 15.8 0.0 0.038 14.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|410671645|ref|YP_006924016.1| - 0.018 14.1 0.0 0.035 13.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DUF2075 PF09848.4 gi|410671645|ref|YP_006924016.1| - 0.044 12.7 0.0 0.091 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|410671645|ref|YP_006924016.1| - 0.047 13.2 0.0 0.096 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|410671645|ref|YP_006924016.1| - 0.08 12.3 0.6 0.19 11.0 0.2 1.8 2 1 0 2 2 1 0 AAA domain Torsin PF06309.6 gi|410671645|ref|YP_006924016.1| - 0.12 12.2 0.0 1 9.2 0.0 2.1 2 0 0 2 2 2 0 Torsin Penicillinase_R PF03965.11 gi|410671646|ref|YP_006924017.1| - 0.0019 18.2 0.1 0.0019 18.2 0.1 1.7 2 0 0 2 2 2 1 Penicillinase repressor TFIIA PF03153.8 gi|410671646|ref|YP_006924017.1| - 0.52 10.1 18.2 0.72 9.6 12.6 1.3 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit DUF2486 PF10667.4 gi|410671646|ref|YP_006924017.1| - 5.3 7.5 8.3 7.8 6.9 5.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2486) DUF131 PF01998.12 gi|410671647|ref|YP_006924018.1| - 1.4e-13 49.9 6.0 1.4e-13 49.9 4.2 1.9 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF202 PF02656.10 gi|410671647|ref|YP_006924018.1| - 0.049 13.8 2.6 0.063 13.5 1.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF202) DUF4212 PF13937.1 gi|410671647|ref|YP_006924018.1| - 0.12 12.3 2.4 0.65 10.0 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4212) FixP_N PF14715.1 gi|410671647|ref|YP_006924018.1| - 0.18 11.2 3.6 0.2 11.0 0.5 2.0 2 0 0 2 2 2 0 N-terminal domain of cytochrome oxidase-cbb3, FixP Claudin_3 PF06653.6 gi|410671647|ref|YP_006924018.1| - 0.33 10.6 3.7 0.36 10.5 2.5 1.0 1 0 0 1 1 1 0 Tight junction protein, Claudin-like DUF3273 PF11677.3 gi|410671647|ref|YP_006924018.1| - 0.53 9.5 4.2 0.62 9.2 2.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3273) DUF3185 PF11381.3 gi|410671647|ref|YP_006924018.1| - 0.7 9.7 4.9 1.1 9.1 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) DUF4131 PF13567.1 gi|410671647|ref|YP_006924018.1| - 1.2 8.5 3.6 1.8 7.9 2.5 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF4097 PF13349.1 gi|410671647|ref|YP_006924018.1| - 1.9 7.9 5.5 0.94 9.0 2.5 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4097) Sdh_cyt PF01127.17 gi|410671647|ref|YP_006924018.1| - 2 8.2 7.4 3.7 7.4 5.1 1.4 1 1 0 1 1 1 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF131 PF01998.12 gi|410671648|ref|YP_006924019.1| - 5.5e-14 51.2 14.3 6.7e-13 47.7 9.9 2.1 1 1 0 1 1 1 1 Protein of unknown function DUF131 DUF2905 PF11146.3 gi|410671648|ref|YP_006924019.1| - 0.11 12.5 8.5 0.096 12.6 1.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2905) DUF4064 PF13273.1 gi|410671648|ref|YP_006924019.1| - 0.64 10.1 7.7 1.4 9.0 5.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) PhaG_MnhG_YufB PF03334.9 gi|410671648|ref|YP_006924019.1| - 1.2 9.2 7.5 17 5.5 5.2 2.1 1 1 0 1 1 1 0 Na+/H+ antiporter subunit UvrB PF12344.3 gi|410671649|ref|YP_006924020.1| - 2.4e-23 81.3 0.4 4.5e-23 80.5 0.3 1.5 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|410671649|ref|YP_006924020.1| - 2e-15 56.3 0.1 6.6e-15 54.7 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|410671649|ref|YP_006924020.1| - 1.2e-12 48.0 0.1 2.8e-10 40.3 0.0 2.6 3 0 0 3 3 3 2 Type III restriction enzyme, res subunit UVR PF02151.14 gi|410671649|ref|YP_006924020.1| - 1.3e-11 43.6 2.2 4.1e-11 42.0 1.6 2.0 1 0 0 1 1 1 1 UvrB/uvrC motif DEAD PF00270.24 gi|410671649|ref|YP_006924020.1| - 1.8e-05 24.3 0.2 0.00068 19.1 0.1 3.1 3 1 0 3 3 3 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|410671649|ref|YP_006924020.1| - 0.025 14.3 0.0 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain ABC_tran PF00005.22 gi|410671650|ref|YP_006924021.1| - 1.7e-34 119.0 0.0 2.7e-34 118.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410671650|ref|YP_006924021.1| - 7e-15 55.7 0.1 1.3e-08 35.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|410671650|ref|YP_006924021.1| - 1.2e-06 27.8 0.2 0.00052 19.1 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain DUF4162 PF13732.1 gi|410671650|ref|YP_006924021.1| - 1.8e-06 28.3 0.0 3.8e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|410671650|ref|YP_006924021.1| - 5.9e-05 22.5 0.2 0.00011 21.6 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|410671650|ref|YP_006924021.1| - 0.00012 22.4 0.3 0.00027 21.3 0.2 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|410671650|ref|YP_006924021.1| - 0.00039 19.7 0.1 0.0086 15.3 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|410671650|ref|YP_006924021.1| - 0.0078 15.4 0.0 0.013 14.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|410671650|ref|YP_006924021.1| - 0.022 14.7 0.0 0.034 14.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain ArgK PF03308.11 gi|410671650|ref|YP_006924021.1| - 0.03 13.0 0.0 0.059 12.1 0.0 1.4 1 0 0 1 1 1 0 ArgK protein AAA_PrkA PF08298.6 gi|410671650|ref|YP_006924021.1| - 0.038 12.6 0.0 0.08 11.6 0.0 1.5 2 0 0 2 2 2 0 PrkA AAA domain MutS_V PF00488.16 gi|410671650|ref|YP_006924021.1| - 0.058 12.7 0.0 0.61 9.4 0.0 2.1 2 0 0 2 2 2 0 MutS domain V AAA_22 PF13401.1 gi|410671650|ref|YP_006924021.1| - 0.066 13.3 0.2 0.39 10.8 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|410671650|ref|YP_006924021.1| - 0.082 12.3 0.2 0.28 10.5 0.1 1.9 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|410671650|ref|YP_006924021.1| - 0.11 12.4 0.3 0.28 11.1 0.2 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase SbcCD_C PF13558.1 gi|410671650|ref|YP_006924021.1| - 0.15 11.9 0.0 0.35 10.7 0.0 1.7 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|410671650|ref|YP_006924021.1| - 0.16 11.8 0.1 0.26 11.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|410671650|ref|YP_006924021.1| - 0.21 11.8 1.0 2.8 8.1 0.3 2.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RelB PF04221.7 gi|410671652|ref|YP_006924023.1| - 8.4e-06 25.4 0.1 1.9e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 RelB antitoxin RHH_1 PF01402.16 gi|410671652|ref|YP_006924023.1| - 0.012 15.5 0.0 1.1 9.2 0.0 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family ParG PF09274.5 gi|410671652|ref|YP_006924023.1| - 0.037 13.9 0.2 0.17 11.8 0.0 1.9 1 1 0 2 2 2 0 ParG UAE_UbL PF14732.1 gi|410671652|ref|YP_006924023.1| - 0.081 13.0 0.0 0.081 13.0 0.0 1.2 1 0 0 1 1 1 0 Ubiquitin/SUMO-activating enzyme ubiquitin-like domain DUF2765 PF10963.3 gi|410671652|ref|YP_006924023.1| - 0.13 12.2 0.1 0.17 11.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2765) Urm1 PF09138.6 gi|410671652|ref|YP_006924023.1| - 0.14 12.3 0.1 0.16 12.0 0.0 1.1 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) Plasmid_stabil PF05016.9 gi|410671653|ref|YP_006924024.1| - 2.1e-07 31.2 0.6 2.3e-07 31.1 0.4 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Plasmid_killer PF05015.8 gi|410671653|ref|YP_006924024.1| - 0.0086 16.1 0.2 0.011 15.8 0.1 1.3 1 1 0 1 1 1 1 Plasmid maintenance system killer protein Plasmid_Txe PF06769.8 gi|410671653|ref|YP_006924024.1| - 0.037 13.8 0.1 0.048 13.4 0.1 1.2 1 0 0 1 1 1 0 Plasmid encoded toxin Txe PHP PF02811.14 gi|410671654|ref|YP_006924025.1| - 7e-07 29.1 0.0 1.1e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|410671654|ref|YP_006924025.1| - 0.13 11.7 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 PHP-associated PHP_C PF13263.1 gi|410671656|ref|YP_006924026.1| - 0.018 14.5 0.0 0.041 13.3 0.0 1.6 1 0 0 1 1 1 0 PHP-associated FAD_binding_7 PF03441.9 gi|410671657|ref|YP_006924028.1| - 1.9e-93 312.6 0.1 2.6e-93 312.2 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|410671657|ref|YP_006924028.1| - 1.5e-43 148.3 0.0 2.7e-43 147.5 0.0 1.3 1 0 0 1 1 1 1 DNA photolyase OprF PF05736.6 gi|410671657|ref|YP_006924028.1| - 0.025 14.0 0.0 0.048 13.1 0.0 1.4 1 0 0 1 1 1 0 OprF membrane domain DUF2944 PF11161.3 gi|410671657|ref|YP_006924028.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2946) MatE PF01554.13 gi|410671658|ref|YP_006924029.1| - 2.9e-37 127.8 33.8 1.6e-22 79.8 8.6 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|410671658|ref|YP_006924029.1| - 3e-05 23.8 29.7 9.3e-05 22.2 10.4 4.9 2 2 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain DUF1724 PF08350.5 gi|410671659|ref|YP_006924030.1| - 4.3e-14 51.7 0.1 7.7e-14 50.9 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_45 PF14947.1 gi|410671659|ref|YP_006924030.1| - 0.039 13.7 0.2 0.1 12.4 0.1 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix VP7 PF00434.13 gi|410671660|ref|YP_006924031.1| - 1.2 8.0 4.3 1.8 7.3 3.0 1.3 1 0 0 1 1 1 0 Glycoprotein VP7 SIMPL PF04402.9 gi|410671661|ref|YP_006924032.1| - 2e-46 158.4 9.7 2.4e-46 158.2 6.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Fer4_16 PF13484.1 gi|410671663|ref|YP_006924034.1| - 0.00033 21.3 2.3 0.00071 20.2 1.6 1.6 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|410671663|ref|YP_006924034.1| - 0.0019 18.5 4.2 0.0068 16.7 2.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410671663|ref|YP_006924034.1| - 0.0027 17.9 4.5 0.029 14.6 3.4 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|410671663|ref|YP_006924034.1| - 0.033 14.7 8.6 0.47 11.1 1.1 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|410671663|ref|YP_006924034.1| - 0.083 12.5 0.1 0.083 12.5 0.1 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Antistasin PF02822.9 gi|410671663|ref|YP_006924034.1| - 0.11 12.8 5.2 1.4 9.2 0.2 2.4 2 0 0 2 2 2 0 Antistasin family Fer4_11 PF13247.1 gi|410671663|ref|YP_006924034.1| - 0.28 11.1 2.3 14 5.6 1.6 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410671663|ref|YP_006924034.1| - 0.33 11.3 3.5 2.2 8.7 2.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410671663|ref|YP_006924034.1| - 0.59 9.9 5.6 9.2 6.1 0.3 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410671663|ref|YP_006924034.1| - 0.94 9.3 5.7 3 7.7 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410671663|ref|YP_006924034.1| - 2.2 8.2 11.9 0.83 9.6 0.9 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain DUF1724 PF08350.5 gi|410671665|ref|YP_006924036.1| - 1.1e-14 53.6 0.1 2.5e-14 52.5 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) TP1 PF02079.11 gi|410671666|ref|YP_006924037.1| - 0.13 12.0 2.2 0.16 11.7 1.5 1.2 1 0 0 1 1 1 0 Nuclear transition protein 1 Trp_halogenase PF04820.9 gi|410671667|ref|YP_006924038.1| - 0.081 11.5 0.1 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 Tryptophan halogenase Hemerythrin PF01814.18 gi|410671668|ref|YP_006924039.1| - 1.7e-14 54.1 4.5 2e-14 53.8 3.1 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain hGDE_central PF14702.1 gi|410671668|ref|YP_006924039.1| - 0.019 14.1 1.6 0.024 13.8 1.0 1.2 1 1 0 1 1 1 0 central domain of human glycogen debranching enzyme DUF3198 PF11433.3 gi|410671668|ref|YP_006924039.1| - 0.021 14.6 0.6 0.05 13.4 0.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3198) Spore_YtfJ PF09579.5 gi|410671670|ref|YP_006924041.1| - 6e-19 67.6 1.3 6e-19 67.6 0.9 2.9 2 1 0 2 2 2 1 Sporulation protein YtfJ (Spore_YtfJ) M_domain PF12938.2 gi|410671670|ref|YP_006924041.1| - 1.1 9.0 4.2 1.4 8.6 2.9 1.2 1 0 0 1 1 1 0 M domain of GW182 Lactamase_B PF00753.22 gi|410671674|ref|YP_006924045.1| - 1.9e-19 70.0 0.0 2.9e-19 69.5 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|410671674|ref|YP_006924045.1| - 2.9e-06 27.3 0.0 8.7e-06 25.7 0.0 1.8 1 1 0 1 1 1 1 Flavodoxin Lactamase_B_3 PF13483.1 gi|410671674|ref|YP_006924045.1| - 0.0033 17.1 0.0 0.0076 15.9 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Cupredoxin_1 PF13473.1 gi|410671675|ref|YP_006924046.1| - 2.5e-07 30.5 0.4 1.3e-06 28.2 0.0 2.1 3 0 0 3 3 3 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|410671675|ref|YP_006924046.1| - 0.0011 19.2 0.1 0.031 14.4 0.0 2.5 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Fer4_13 PF13370.1 gi|410671676|ref|YP_006924047.1| - 1.2e-19 70.4 4.7 1.4e-19 70.2 3.3 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|410671676|ref|YP_006924047.1| - 8e-13 48.7 3.4 1e-12 48.4 2.3 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|410671676|ref|YP_006924047.1| - 5.5e-06 26.5 0.4 8.7e-06 25.9 0.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|410671676|ref|YP_006924047.1| - 0.00029 20.2 5.4 0.011 15.2 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|410671676|ref|YP_006924047.1| - 0.0045 17.3 1.6 0.033 14.5 1.2 2.0 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410671676|ref|YP_006924047.1| - 0.0047 16.7 3.5 0.012 15.4 0.7 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410671676|ref|YP_006924047.1| - 0.0066 16.2 1.7 0.019 14.7 1.4 1.6 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410671676|ref|YP_006924047.1| - 0.0086 16.8 0.5 0.16 12.7 0.3 2.1 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|410671676|ref|YP_006924047.1| - 0.013 15.3 0.5 0.013 15.3 0.4 1.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|410671676|ref|YP_006924047.1| - 0.78 10.2 4.4 0.56 10.6 0.9 2.0 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|410671676|ref|YP_006924047.1| - 1.1 9.2 4.3 3.7 7.5 0.7 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain PQ-loop PF04193.9 gi|410671677|ref|YP_006924048.1| - 6.9e-12 44.7 0.7 9.7e-12 44.2 0.5 1.3 1 0 0 1 1 1 1 PQ loop repeat MtN3_slv PF03083.11 gi|410671677|ref|YP_006924048.1| - 3.2e-10 39.7 1.4 3.8e-10 39.4 1.0 1.1 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange LAB_N PF07578.6 gi|410671677|ref|YP_006924048.1| - 0.00015 21.5 0.1 0.00021 21.1 0.1 1.3 1 1 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain Gly-zipper_Omp PF13488.1 gi|410671678|ref|YP_006924049.1| - 0.091 12.4 6.5 0.15 11.7 4.5 1.3 1 0 0 1 1 1 0 Glycine zipper FtsX PF02687.16 gi|410671678|ref|YP_006924049.1| - 0.21 11.3 7.7 4.3 7.1 0.4 2.2 1 1 1 2 2 2 0 FtsX-like permease family Gly-zipper_OmpA PF13436.1 gi|410671678|ref|YP_006924049.1| - 1.3 8.7 3.8 2.6 7.7 2.6 1.4 1 1 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain FUSC_2 PF13515.1 gi|410671678|ref|YP_006924049.1| - 1.6 8.6 7.6 3.3 7.6 5.3 1.8 1 1 0 1 1 1 0 Fusaric acid resistance protein-like DsbB PF02600.11 gi|410671678|ref|YP_006924049.1| - 6.5 6.5 10.0 1.1 9.0 2.4 2.0 1 1 1 2 2 2 0 Disulfide bond formation protein DsbB Peptidase_C39_2 PF13529.1 gi|410671679|ref|YP_006924050.1| - 1.4e-13 51.3 0.1 3.5e-13 50.1 0.0 1.7 1 0 0 1 1 1 1 Peptidase_C39 like family Peptidase_C39 PF03412.10 gi|410671679|ref|YP_006924050.1| - 0.09 12.5 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Peptidase C39 family PAS_4 PF08448.5 gi|410671681|ref|YP_006924052.1| - 2.4e-24 85.4 0.0 2.5e-11 43.6 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|410671681|ref|YP_006924052.1| - 7.7e-23 80.8 0.0 3.2e-12 46.7 0.0 2.5 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.19 gi|410671681|ref|YP_006924052.1| - 7.3e-20 71.0 0.0 2.9e-19 69.1 0.0 2.1 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.21 gi|410671681|ref|YP_006924052.1| - 9.6e-20 70.3 0.0 1.8e-19 69.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|410671681|ref|YP_006924052.1| - 2.8e-13 49.6 0.0 8.7e-06 25.5 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|410671681|ref|YP_006924052.1| - 2e-09 36.9 0.0 0.00013 21.6 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|410671681|ref|YP_006924052.1| - 2.6e-05 24.2 0.1 0.28 11.2 0.0 2.9 3 0 0 3 3 3 2 PAS fold PAS_7 PF12860.2 gi|410671681|ref|YP_006924052.1| - 0.00024 21.1 0.0 2.9 7.9 0.0 4.0 4 0 0 4 4 4 2 PAS fold HisKA PF00512.20 gi|410671681|ref|YP_006924052.1| - 0.00044 20.1 0.2 0.0014 18.6 0.1 2.0 2 0 0 2 2 1 1 His Kinase A (phospho-acceptor) domain PAS_11 PF14598.1 gi|410671681|ref|YP_006924052.1| - 0.0034 17.3 0.0 2.1 8.3 0.0 2.4 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.1 gi|410671681|ref|YP_006924052.1| - 0.018 14.8 0.0 0.06 13.1 0.0 1.9 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|410671681|ref|YP_006924052.1| - 0.032 13.8 0.2 0.08 12.5 0.1 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MEDS PF14417.1 gi|410671681|ref|YP_006924052.1| - 0.036 13.1 0.0 0.064 12.3 0.0 1.3 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS_10 PF13596.1 gi|410671681|ref|YP_006924052.1| - 0.092 13.0 0.0 21 5.4 0.0 2.7 2 0 0 2 2 2 0 PAS domain dCMP_cyt_deam_1 PF00383.17 gi|410671682|ref|YP_006924053.1| - 1.2e-22 79.4 0.0 1.6e-22 79.1 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Bd3614-deam PF14439.1 gi|410671682|ref|YP_006924053.1| - 0.004 17.0 0.5 0.012 15.5 0.3 1.7 1 1 1 2 2 2 1 Bd3614-like deaminase XOO_2897-deam PF14440.1 gi|410671682|ref|YP_006924053.1| - 0.09 12.4 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase Peptidase_U32 PF01136.14 gi|410671683|ref|YP_006924054.1| - 1.7e-82 275.8 0.0 2.1e-82 275.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family U32 FeoA PF04023.9 gi|410671684|ref|YP_006924055.1| - 6.1e-13 48.5 0.0 6.7e-13 48.3 0.0 1.0 1 0 0 1 1 1 1 FeoA domain RE_EcoO109I PF14511.1 gi|410671684|ref|YP_006924055.1| - 0.12 11.7 0.1 0.13 11.6 0.0 1.0 1 0 0 1 1 1 0 Type II restriction endonuclease EcoO109I K-box PF01486.12 gi|410671685|ref|YP_006924056.1| - 0.19 11.5 1.1 0.41 10.4 0.8 1.6 1 1 0 1 1 1 0 K-box region NAD_binding_1 PF00175.16 gi|410671686|ref|YP_006924057.1| - 2.7e-12 47.2 0.1 4.4e-12 46.5 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|410671686|ref|YP_006924057.1| - 1.6e-11 43.4 7.7 1.6e-11 43.4 5.3 1.8 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|410671686|ref|YP_006924057.1| - 0.00013 22.0 0.0 0.00052 20.0 0.0 2.0 1 1 0 1 1 1 1 Oxidoreductase FAD-binding domain Fer2_3 PF13085.1 gi|410671686|ref|YP_006924057.1| - 0.14 11.9 1.0 0.27 11.0 0.7 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DHO_dh PF01180.16 gi|410671687|ref|YP_006924058.1| - 7.3e-66 222.1 0.7 8.2e-66 221.9 0.5 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|410671687|ref|YP_006924058.1| - 3e-10 39.4 1.8 3.9e-09 35.7 1.2 2.0 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|410671687|ref|YP_006924058.1| - 5.4e-05 22.5 0.6 0.00021 20.6 0.1 2.2 2 1 1 3 3 3 1 Histidine biosynthesis protein NMO PF03060.10 gi|410671687|ref|YP_006924058.1| - 0.0001 21.5 4.2 0.0001 21.5 2.9 2.1 2 1 0 2 2 2 1 Nitronate monooxygenase PcrB PF01884.12 gi|410671687|ref|YP_006924058.1| - 0.0026 17.0 0.6 0.078 12.2 0.1 2.3 2 0 0 2 2 2 1 PcrB family IMPDH PF00478.20 gi|410671687|ref|YP_006924058.1| - 0.0036 16.2 1.5 0.0069 15.3 1.1 1.4 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain DUF561 PF04481.7 gi|410671687|ref|YP_006924058.1| - 0.0043 16.0 0.5 0.0098 14.8 0.3 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF561) ThiG PF05690.9 gi|410671687|ref|YP_006924058.1| - 0.034 13.2 1.5 0.055 12.5 0.1 1.9 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|410671687|ref|YP_006924058.1| - 0.064 12.2 1.1 0.19 10.6 0.7 2.0 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase G3P_antiterm PF04309.7 gi|410671687|ref|YP_006924058.1| - 0.12 11.4 0.2 4.5 6.2 0.0 2.5 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator Porphobil_deam PF01379.15 gi|410671688|ref|YP_006924059.1| - 3.4e-67 225.4 0.4 4.6e-67 225.0 0.2 1.2 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|410671688|ref|YP_006924059.1| - 5.3e-08 32.8 0.0 1.2e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Aminotran_3 PF00202.16 gi|410671689|ref|YP_006924060.1| - 6.8e-67 225.7 0.0 8.8e-67 225.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III ALAD PF00490.16 gi|410671690|ref|YP_006924061.1| - 2.1e-149 496.8 0.1 2.3e-149 496.6 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Mob_Pre PF01076.14 gi|410671690|ref|YP_006924061.1| - 0.089 12.4 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Plasmid recombination enzyme GlutR_N PF05201.10 gi|410671691|ref|YP_006924062.1| - 1.7e-38 131.6 0.1 3.6e-38 130.5 0.1 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|410671691|ref|YP_006924062.1| - 3.5e-34 117.8 0.2 9.5e-34 116.3 0.1 1.8 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|410671691|ref|YP_006924062.1| - 5e-21 74.5 1.2 1.1e-20 73.4 0.9 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|410671691|ref|YP_006924062.1| - 7e-08 32.7 0.1 2.2e-07 31.2 0.0 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|410671691|ref|YP_006924062.1| - 6e-06 25.5 0.2 2.1e-05 23.7 0.2 1.9 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|410671691|ref|YP_006924062.1| - 9.3e-06 25.9 0.0 2.5e-05 24.5 0.0 1.8 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|410671691|ref|YP_006924062.1| - 1.4e-05 25.0 0.1 4.4e-05 23.3 0.1 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.1 gi|410671691|ref|YP_006924062.1| - 4.1e-05 23.7 0.1 0.00011 22.3 0.0 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|410671691|ref|YP_006924062.1| - 7.8e-05 22.7 0.1 0.00015 21.8 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding OCD_Mu_crystall PF02423.10 gi|410671691|ref|YP_006924062.1| - 0.00013 20.8 0.0 0.00023 20.0 0.0 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family GFO_IDH_MocA PF01408.17 gi|410671691|ref|YP_006924062.1| - 0.0002 21.8 0.3 0.00084 19.8 0.0 2.1 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold DUF2325 PF10087.4 gi|410671691|ref|YP_006924062.1| - 0.0006 19.5 0.1 0.0021 17.8 0.0 2.0 2 0 0 2 2 1 1 Uncharacterized protein conserved in bacteria (DUF2325) THF_DHG_CYH_C PF02882.14 gi|410671691|ref|YP_006924062.1| - 0.0006 18.9 0.6 0.011 14.8 0.2 2.6 2 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TrkA_N PF02254.13 gi|410671691|ref|YP_006924062.1| - 0.0015 18.4 0.1 0.0056 16.6 0.1 2.0 1 0 0 1 1 1 1 TrkA-N domain Peripla_BP_2 PF01497.13 gi|410671691|ref|YP_006924062.1| - 0.0051 15.9 0.0 0.0091 15.1 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein IlvN PF07991.7 gi|410671691|ref|YP_006924062.1| - 0.02 14.2 0.1 0.049 12.9 0.0 1.7 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain Saccharop_dh PF03435.13 gi|410671691|ref|YP_006924062.1| - 0.036 13.0 0.0 0.047 12.6 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Dna2 PF08696.6 gi|410671691|ref|YP_006924062.1| - 0.043 13.1 0.5 0.52 9.5 0.0 2.7 3 0 0 3 3 3 0 DNA replication factor Dna2 NAD_binding_7 PF13241.1 gi|410671692|ref|YP_006924063.1| - 7.9e-11 42.1 0.1 1.5e-10 41.2 0.0 1.5 2 0 0 2 2 2 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.1 gi|410671692|ref|YP_006924063.1| - 0.014 14.3 0.1 0.023 13.6 0.1 1.4 1 0 0 1 1 1 0 Sirohaem biosynthesis protein central DUF2025 PF09634.5 gi|410671692|ref|YP_006924063.1| - 0.05 13.3 0.0 0.081 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2025) HTH_AsnC-type PF13404.1 gi|410671694|ref|YP_006924065.1| - 1.8e-07 30.5 0.2 4.9e-07 29.1 0.1 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|410671694|ref|YP_006924065.1| - 0.00065 19.0 0.9 0.0021 17.4 0.6 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|410671694|ref|YP_006924065.1| - 0.012 15.2 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 MarR family LexA_DNA_bind PF01726.11 gi|410671694|ref|YP_006924065.1| - 0.039 13.5 0.0 0.058 12.9 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_Tnp_ISL3 PF13542.1 gi|410671694|ref|YP_006924065.1| - 0.045 12.9 0.0 0.09 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF3650 PF12368.3 gi|410671694|ref|YP_006924065.1| - 0.096 12.1 0.3 0.54 9.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3650) DUF2805 PF10985.3 gi|410671694|ref|YP_006924065.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2805) HTH_AsnC-type PF13404.1 gi|410671695|ref|YP_006924066.1| - 1.6e-08 33.9 0.0 3.1e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|410671695|ref|YP_006924066.1| - 7.6e-05 22.0 3.9 0.0001 21.6 1.1 2.3 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding IF2_N PF04760.10 gi|410671695|ref|YP_006924066.1| - 0.04 13.5 1.2 0.65 9.6 0.1 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_11 PF08279.7 gi|410671695|ref|YP_006924066.1| - 0.064 12.9 0.4 0.28 10.8 0.0 2.0 2 0 0 2 2 2 0 HTH domain CoA_binding_3 PF13727.1 gi|410671695|ref|YP_006924066.1| - 0.071 12.9 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 CoA-binding domain TrmB PF01978.14 gi|410671695|ref|YP_006924066.1| - 0.086 12.5 0.1 1.3 8.7 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB TENA_THI-4 PF03070.11 gi|410671695|ref|YP_006924066.1| - 0.12 12.0 0.0 0.24 11.1 0.0 1.4 1 1 0 1 1 1 0 TENA/THI-4/PQQC family Radical_SAM PF04055.16 gi|410671696|ref|YP_006924067.1| - 2.6e-20 73.2 0.2 1.1e-19 71.2 0.0 2.1 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|410671696|ref|YP_006924067.1| - 4e-10 39.7 0.0 1.2e-09 38.2 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|410671696|ref|YP_006924067.1| - 5.4e-10 39.5 0.0 1.8e-09 37.8 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|410671696|ref|YP_006924067.1| - 2.6e-07 30.8 2.1 5.9e-07 29.7 1.4 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain PARG_cat PF05028.9 gi|410671696|ref|YP_006924067.1| - 0.075 12.2 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 Poly (ADP-ribose) glycohydrolase (PARG) CcmE PF03100.10 gi|410671697|ref|YP_006924068.1| - 5.3e-08 32.4 0.0 6.1e-08 32.2 0.0 1.0 1 0 0 1 1 1 1 CcmE polyprenyl_synt PF00348.12 gi|410671698|ref|YP_006924069.1| - 1.9e-45 154.7 0.0 2.5e-45 154.3 0.0 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase Radical_SAM PF04055.16 gi|410671699|ref|YP_006924070.1| - 4.5e-16 59.4 0.0 7.5e-16 58.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|410671699|ref|YP_006924070.1| - 5.8e-06 26.5 0.0 1.4e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain OrfB_IS605 PF01385.14 gi|410671700|ref|YP_006924071.1| - 4.4e-46 157.1 0.9 6.1e-46 156.6 0.6 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|410671700|ref|YP_006924071.1| - 1.2e-22 79.3 0.2 2.2e-22 78.4 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain FYVE PF01363.16 gi|410671700|ref|YP_006924071.1| - 0.036 13.9 0.2 0.083 12.7 0.1 1.6 1 0 0 1 1 1 0 FYVE zinc finger TF_Zn_Ribbon PF08271.7 gi|410671700|ref|YP_006924071.1| - 0.087 12.1 0.3 3.1 7.2 0.0 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|410671700|ref|YP_006924071.1| - 0.096 12.5 0.2 0.19 11.5 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon ATP-synt_B PF00430.13 gi|410671701|ref|YP_006924072.1| - 0.00037 20.2 12.6 0.00037 20.2 8.7 1.9 1 1 1 2 2 2 1 ATP synthase B/B' CF(0) V-ATPase_G PF03179.10 gi|410671701|ref|YP_006924072.1| - 0.0033 17.7 12.3 0.0042 17.3 8.5 1.1 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit HrpE PF06188.7 gi|410671701|ref|YP_006924072.1| - 0.064 12.9 4.8 0.079 12.6 3.1 1.3 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF883 PF05957.8 gi|410671701|ref|YP_006924072.1| - 0.089 13.1 5.4 0.1 13.0 3.2 1.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) DUF2992 PF11208.3 gi|410671701|ref|YP_006924072.1| - 0.22 11.4 3.8 0.25 11.2 2.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2992) Plasmid_parti PF01672.11 gi|410671701|ref|YP_006924072.1| - 1 9.8 3.9 2.4 8.6 1.9 2.1 1 1 1 2 2 2 0 Putative plasmid partition protein DUF3552 PF12072.3 gi|410671701|ref|YP_006924072.1| - 2.8 7.1 17.4 7.3 5.7 8.9 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DivIVA PF05103.8 gi|410671701|ref|YP_006924072.1| - 6.1 6.9 11.9 54 3.8 8.3 2.0 1 1 0 1 1 1 0 DivIVA protein V_ATPase_I PF01496.14 gi|410671702|ref|YP_006924073.1| - 5.7e-114 381.6 1.7 1e-79 268.3 0.0 2.9 1 1 0 2 2 2 2 V-type ATPase 116kDa subunit family Prefoldin_2 PF01920.15 gi|410671702|ref|YP_006924073.1| - 3.4 7.4 6.2 1.7 8.4 0.5 2.3 2 0 0 2 2 2 0 Prefoldin subunit ATP-synt_C PF00137.16 gi|410671703|ref|YP_006924074.1| - 8.7e-19 67.2 10.9 1e-18 66.9 7.5 1.1 1 0 0 1 1 1 1 ATP synthase subunit C CinA PF02464.12 gi|410671703|ref|YP_006924074.1| - 0.037 13.4 0.5 0.036 13.5 0.4 1.1 1 0 0 1 1 1 0 Competence-damaged protein TraT PF05818.7 gi|410671703|ref|YP_006924074.1| - 0.32 10.4 1.4 0.35 10.2 1.0 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein vATP-synt_E PF01991.13 gi|410671704|ref|YP_006924075.1| - 1.5e-32 112.4 15.8 4.8e-32 110.8 11.0 1.6 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.13 gi|410671704|ref|YP_006924075.1| - 0.0018 18.0 10.9 0.0018 18.0 7.6 1.9 1 1 1 2 2 2 1 ATP synthase B/B' CF(0) Cytochrom_C552 PF02335.10 gi|410671704|ref|YP_006924075.1| - 0.023 13.4 0.8 0.028 13.1 0.5 1.1 1 0 0 1 1 1 0 Cytochrome c552 DUF2968 PF11180.3 gi|410671704|ref|YP_006924075.1| - 0.056 12.8 3.9 0.039 13.3 0.8 1.9 1 1 0 2 2 2 0 Protein of unknown function (DUF2968) DUF3552 PF12072.3 gi|410671704|ref|YP_006924075.1| - 0.072 12.3 9.9 0.031 13.4 3.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) Exonuc_VII_L PF02601.10 gi|410671704|ref|YP_006924075.1| - 0.097 11.8 2.7 0.1 11.7 1.9 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit HrpE PF06188.7 gi|410671704|ref|YP_006924075.1| - 0.45 10.2 5.6 1.2 8.8 3.9 1.8 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DivIVA PF05103.8 gi|410671704|ref|YP_006924075.1| - 0.51 10.3 11.0 0.096 12.7 3.0 2.2 1 1 1 2 2 2 0 DivIVA protein DUF4230 PF14014.1 gi|410671704|ref|YP_006924075.1| - 2.3 8.0 6.3 1.5 8.7 2.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4230) vATP-synt_AC39 PF01992.11 gi|410671705|ref|YP_006924076.1| - 1.4e-86 290.7 2.6 1.6e-86 290.5 1.8 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.12 gi|410671706|ref|YP_006924077.1| - 8.2e-18 64.5 0.1 9.5e-18 64.3 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit YcgL PF05166.8 gi|410671706|ref|YP_006924077.1| - 0.12 12.5 0.0 2.6 8.2 0.0 2.1 1 1 1 2 2 2 0 YcgL domain ATP-synt_ab PF00006.20 gi|410671707|ref|YP_006924078.1| - 2.2e-98 328.0 0.0 3.2e-98 327.4 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|410671707|ref|YP_006924078.1| - 7.4e-21 74.7 2.1 1.4e-20 73.8 1.4 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|410671707|ref|YP_006924078.1| - 1.1e-14 54.4 2.1 3.3e-14 52.8 1.1 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.1 gi|410671707|ref|YP_006924078.1| - 0.037 13.7 0.2 0.15 11.7 0.0 2.0 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain NQRA PF05896.6 gi|410671707|ref|YP_006924078.1| - 0.053 12.6 0.0 0.099 11.8 0.0 1.3 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AAA_22 PF13401.1 gi|410671707|ref|YP_006924078.1| - 0.062 13.4 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Peptidase_M23 PF01551.17 gi|410671707|ref|YP_006924078.1| - 0.11 12.5 0.2 11 6.1 0.0 2.6 2 0 0 2 2 2 0 Peptidase family M23 DUF1932 PF09130.6 gi|410671707|ref|YP_006924078.1| - 0.15 11.7 1.6 3.7 7.3 0.2 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1932) ATP-synt_ab PF00006.20 gi|410671708|ref|YP_006924079.1| - 1.1e-59 201.5 0.0 1.4e-59 201.1 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|410671708|ref|YP_006924079.1| - 1e-16 61.3 0.1 2.1e-16 60.4 0.0 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|410671708|ref|YP_006924079.1| - 5.9e-10 39.2 0.9 5.9e-10 39.2 0.6 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|410671708|ref|YP_006924079.1| - 3.1e-06 26.9 0.3 7.7e-06 25.7 0.2 1.7 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_D PF01813.12 gi|410671709|ref|YP_006924080.1| - 6.9e-62 208.4 6.0 7.7e-62 208.3 4.2 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF4533 PF15047.1 gi|410671709|ref|YP_006924080.1| - 0.04 13.3 0.7 0.14 11.6 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4533) Ead_Ea22 PF13935.1 gi|410671709|ref|YP_006924080.1| - 0.054 13.8 0.2 1.8 8.8 0.0 2.1 2 0 0 2 2 2 0 Ead/Ea22-like protein PMT_2 PF13231.1 gi|410671710|ref|YP_006924081.1| - 3.8e-20 72.3 17.6 3.8e-20 72.3 12.2 2.7 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|410671710|ref|YP_006924081.1| - 7.6e-13 48.3 15.4 7.6e-13 48.3 10.7 2.3 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Epimerase PF01370.16 gi|410671712|ref|YP_006924083.1| - 4e-57 193.3 0.1 1.5e-56 191.4 0.0 1.7 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|410671712|ref|YP_006924083.1| - 2.4e-24 85.5 0.0 3.4e-24 85.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|410671712|ref|YP_006924083.1| - 3.4e-14 52.3 0.1 9e-10 37.8 0.0 2.9 1 1 1 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|410671712|ref|YP_006924083.1| - 2.1e-13 49.8 0.0 2e-12 46.6 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|410671712|ref|YP_006924083.1| - 6.2e-13 48.2 0.0 1.1e-12 47.4 0.0 1.4 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|410671712|ref|YP_006924083.1| - 0.00017 21.6 0.0 0.00053 20.0 0.0 1.8 1 1 0 1 1 1 1 NADH(P)-binding Epimerase_Csub PF13950.1 gi|410671712|ref|YP_006924083.1| - 0.0005 19.9 0.0 0.0011 18.8 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit adh_short PF00106.20 gi|410671712|ref|YP_006924083.1| - 0.0053 16.6 0.0 0.072 13.0 0.0 2.6 2 1 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|410671712|ref|YP_006924083.1| - 0.066 12.8 0.0 0.87 9.2 0.0 2.6 2 1 0 2 2 2 0 KR domain Glycos_transf_2 PF00535.21 gi|410671713|ref|YP_006924084.1| - 8.2e-37 126.4 2.4 4.2e-36 124.1 0.7 2.1 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|410671713|ref|YP_006924084.1| - 9.3e-13 48.4 0.0 3.4e-12 46.6 0.0 1.8 1 1 1 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|410671713|ref|YP_006924084.1| - 3.6e-10 39.3 0.5 5.7e-10 38.7 0.3 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|410671713|ref|YP_006924084.1| - 0.00031 20.0 0.0 0.00052 19.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|410671713|ref|YP_006924084.1| - 0.00093 19.4 0.1 0.0028 17.9 0.0 1.8 1 1 1 2 2 2 1 Glycosyl transferase family 2 DUF2207 PF09972.4 gi|410671713|ref|YP_006924084.1| - 0.057 12.0 0.3 0.077 11.5 0.2 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Glycos_transf_1 PF00534.15 gi|410671714|ref|YP_006924085.1| - 7.7e-44 149.1 0.3 1.3e-43 148.3 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|410671714|ref|YP_006924085.1| - 1.1e-18 67.7 0.0 1.7e-18 67.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|410671714|ref|YP_006924085.1| - 1.1e-16 60.8 0.7 1.1e-16 60.8 0.5 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|410671714|ref|YP_006924085.1| - 5.1e-14 52.7 0.0 6.9e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|410671714|ref|YP_006924085.1| - 4.5e-07 29.7 0.0 1.4e-06 28.1 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|410671714|ref|YP_006924085.1| - 0.00017 21.7 0.0 0.00059 20.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|410671714|ref|YP_006924085.1| - 0.064 12.7 0.2 0.18 11.2 0.1 1.8 1 1 1 2 2 2 0 Starch synthase catalytic domain Methyltransf_23 PF13489.1 gi|410671715|ref|YP_006924086.1| - 5.4e-14 52.2 0.0 7.3e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|410671715|ref|YP_006924086.1| - 9e-12 44.8 1.3 1.2e-11 44.4 0.9 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|410671715|ref|YP_006924086.1| - 1.5e-11 44.5 0.0 2.6e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|410671715|ref|YP_006924086.1| - 8.1e-10 39.0 0.1 1.9e-09 37.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|410671715|ref|YP_006924086.1| - 3.7e-09 36.2 0.0 5e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.2 gi|410671715|ref|YP_006924086.1| - 1.9e-08 34.8 0.0 3.7e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|410671715|ref|YP_006924086.1| - 8.9e-08 32.4 0.0 1.5e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|410671715|ref|YP_006924086.1| - 2.7e-06 26.6 0.0 3.9e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|410671715|ref|YP_006924086.1| - 0.0004 20.0 0.1 0.00086 19.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|410671715|ref|YP_006924086.1| - 0.001 19.0 0.0 0.0025 17.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|410671715|ref|YP_006924086.1| - 0.0011 18.3 0.0 0.0023 17.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|410671715|ref|YP_006924086.1| - 0.0015 17.3 0.0 0.0019 16.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.12 gi|410671715|ref|YP_006924086.1| - 0.0029 16.6 0.0 0.0057 15.7 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase CheR PF01739.13 gi|410671715|ref|YP_006924086.1| - 0.0033 16.7 0.1 0.064 12.5 0.1 2.3 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain TehB PF03848.9 gi|410671715|ref|YP_006924086.1| - 0.0046 16.1 0.6 0.0065 15.6 0.4 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_2 PF00891.13 gi|410671715|ref|YP_006924086.1| - 0.0048 16.1 0.1 0.011 14.9 0.0 1.6 1 1 0 1 1 1 1 O-methyltransferase AdoMet_MTase PF07757.8 gi|410671715|ref|YP_006924086.1| - 0.0093 16.0 0.2 0.086 12.9 0.1 2.3 2 0 0 2 2 2 1 Predicted AdoMet-dependent methyltransferase FmrO PF07091.6 gi|410671715|ref|YP_006924086.1| - 0.047 12.6 0.0 0.061 12.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) FtsJ PF01728.14 gi|410671715|ref|YP_006924086.1| - 0.061 13.3 0.0 0.084 12.8 0.0 1.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase Glycos_transf_1 PF00534.15 gi|410671716|ref|YP_006924087.1| - 6e-18 64.8 0.1 9.9e-18 64.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|410671716|ref|YP_006924087.1| - 4.6e-09 36.5 0.0 6.9e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|410671716|ref|YP_006924087.1| - 5.8e-08 32.8 0.0 8.9e-07 29.1 0.0 2.5 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|410671716|ref|YP_006924087.1| - 0.0092 15.8 1.0 0.0092 15.8 0.7 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like CDC24 PF06395.6 gi|410671716|ref|YP_006924087.1| - 0.089 12.8 1.7 1 9.4 0.1 3.0 3 0 0 3 3 3 0 CDC24 Calponin Glycos_transf_1 PF00534.15 gi|410671717|ref|YP_006924088.1| - 4e-35 120.7 0.6 9.7e-35 119.5 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|410671717|ref|YP_006924088.1| - 1.2e-16 61.0 0.0 2.5e-16 60.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|410671717|ref|YP_006924088.1| - 8.2e-14 51.7 0.4 1.4e-13 50.9 0.3 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|410671717|ref|YP_006924088.1| - 4.5e-09 36.4 0.0 8.9e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|410671717|ref|YP_006924088.1| - 7.9e-08 32.2 3.5 2.3e-07 30.7 2.4 1.8 1 0 0 1 1 1 1 Glycosyl transferase 4-like DUF4459 PF14673.1 gi|410671717|ref|YP_006924088.1| - 0.23 11.1 2.3 16 5.1 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4459) Polysacc_synt PF01943.12 gi|410671718|ref|YP_006924089.1| - 3.6e-30 105.1 39.1 3.6e-30 105.1 27.1 2.0 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|410671718|ref|YP_006924089.1| - 2.6e-16 59.8 28.9 2.6e-16 59.8 20.0 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|410671718|ref|YP_006924089.1| - 4e-08 33.1 32.9 3.8e-07 30.0 8.7 4.9 2 1 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.13 gi|410671718|ref|YP_006924089.1| - 5.5e-06 26.1 11.6 5.5e-06 26.1 8.0 3.6 3 1 0 3 3 3 1 MatE Pox_A28 PF04584.9 gi|410671718|ref|YP_006924089.1| - 4.3 7.2 6.6 3 7.7 2.5 2.3 2 0 0 2 2 2 0 Poxvirus A28 family Glycos_transf_2 PF00535.21 gi|410671719|ref|YP_006924090.1| - 3.3e-36 124.5 0.6 7e-36 123.4 0.4 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|410671719|ref|YP_006924090.1| - 1.5e-08 34.7 0.0 2.2e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|410671719|ref|YP_006924090.1| - 0.001 19.3 0.1 0.0076 16.5 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 2 DUF1212 PF06738.7 gi|410671720|ref|YP_006924091.1| - 0.17 11.3 0.1 0.17 11.3 0.0 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF1212) Laminin_G_3 PF13385.1 gi|410671721|ref|YP_006924092.1| - 3.9e-27 95.3 5.3 4.1e-27 95.3 0.3 3.2 3 2 0 3 3 3 1 Concanavalin A-like lectin/glucanases superfamily CBM_4_9 PF02018.12 gi|410671721|ref|YP_006924092.1| - 4.1e-07 30.0 0.3 0.036 14.0 0.0 2.7 2 0 0 2 2 2 2 Carbohydrate binding domain CARDB PF07705.6 gi|410671721|ref|YP_006924092.1| - 4.7e-06 26.5 0.0 2.3e-05 24.3 0.0 2.2 1 0 0 1 1 1 1 CARDB Sialidase PF02973.11 gi|410671721|ref|YP_006924092.1| - 0.069 12.1 0.0 0.15 11.0 0.0 1.5 1 0 0 1 1 1 0 Sialidase, N-terminal domain TRAP_beta PF05753.9 gi|410671721|ref|YP_006924092.1| - 0.11 11.7 0.2 0.34 10.0 0.0 1.9 3 0 0 3 3 3 0 Translocon-associated protein beta (TRAPB) ZU5 PF00791.15 gi|410671722|ref|YP_006924093.1| - 0.0068 16.0 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 ZU5 domain AhpC-TSA PF00578.16 gi|410671723|ref|YP_006924094.1| - 7.9e-20 70.7 0.0 8.9e-20 70.6 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|410671723|ref|YP_006924094.1| - 1.1e-08 34.7 0.0 1.3e-08 34.5 0.0 1.0 1 0 0 1 1 1 1 Redoxin ABC_tran PF00005.22 gi|410671724|ref|YP_006924095.1| - 9.3e-23 81.0 0.0 1.2e-22 80.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410671724|ref|YP_006924095.1| - 1.8e-09 37.9 2.1 1.2e-07 32.0 0.2 2.0 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|410671724|ref|YP_006924095.1| - 4.1e-05 22.9 0.1 6.4e-05 22.2 0.0 1.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|410671724|ref|YP_006924095.1| - 0.01 15.7 0.3 0.24 11.3 0.2 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|410671724|ref|YP_006924095.1| - 0.017 14.3 0.0 0.028 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|410671724|ref|YP_006924095.1| - 0.03 14.3 0.3 0.056 13.4 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|410671724|ref|YP_006924095.1| - 0.055 14.2 0.4 0.11 13.3 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|410671724|ref|YP_006924095.1| - 0.11 12.0 0.1 0.21 11.1 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DEAD PF00270.24 gi|410671724|ref|YP_006924095.1| - 0.12 11.8 0.0 0.24 10.9 0.0 1.7 1 1 0 1 1 1 0 DEAD/DEAH box helicase NACHT PF05729.7 gi|410671724|ref|YP_006924095.1| - 0.13 11.9 0.3 0.33 10.5 0.2 1.7 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|410671724|ref|YP_006924095.1| - 0.13 12.1 0.8 3.4 7.6 0.0 2.2 1 1 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|410671724|ref|YP_006924095.1| - 0.16 12.0 0.4 0.54 10.4 0.3 1.9 1 1 0 1 1 1 0 AAA domain UPF0014 PF03649.8 gi|410671725|ref|YP_006924096.1| - 3.2e-47 160.8 15.0 4.1e-47 160.4 10.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) DUF1638 PF07796.6 gi|410671726|ref|YP_006924097.1| - 1.9e-41 141.4 0.0 2.5e-41 141.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) DUF1328 PF07043.8 gi|410671727|ref|YP_006924098.1| - 6.9e-14 51.5 15.5 9.1e-14 51.1 10.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) DUF420 PF04238.7 gi|410671727|ref|YP_006924098.1| - 0.016 15.1 2.8 0.017 15.0 2.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF420) ABC2_membrane_2 PF12679.2 gi|410671727|ref|YP_006924098.1| - 0.64 8.8 12.1 0.65 8.7 8.4 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein YlaH PF14036.1 gi|410671727|ref|YP_006924098.1| - 0.91 9.6 7.8 1.1 9.4 5.4 1.2 1 0 0 1 1 1 0 YlaH-like protein SecG PF03840.9 gi|410671727|ref|YP_006924098.1| - 3.1 7.5 12.0 0.3 10.8 1.6 2.0 1 1 1 2 2 2 0 Preprotein translocase SecG subunit Cation_ATPase_C PF00689.16 gi|410671727|ref|YP_006924098.1| - 3.9 6.9 9.1 4.6 6.7 6.3 1.1 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus RDD PF06271.7 gi|410671727|ref|YP_006924098.1| - 5.3 6.9 11.2 5.6 6.8 7.8 1.0 1 0 0 1 1 1 0 RDD family Cupin_2 PF07883.6 gi|410671728|ref|YP_006924099.1| - 2.1e-12 46.3 0.0 2.5e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 Cupin domain 3-HAO PF06052.7 gi|410671728|ref|YP_006924099.1| - 0.011 15.1 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyanthranilic acid dioxygenase MannoseP_isomer PF01050.13 gi|410671728|ref|YP_006924099.1| - 0.066 12.8 0.0 0.066 12.8 0.0 1.0 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase AraC_binding PF02311.14 gi|410671728|ref|YP_006924099.1| - 0.068 12.8 0.0 0.076 12.6 0.0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|410671728|ref|YP_006924099.1| - 0.077 12.4 0.0 0.098 12.0 0.0 1.2 1 0 0 1 1 1 0 Cupin GyrI-like PF06445.10 gi|410671731|ref|YP_006924102.1| - 2.7e-11 43.7 0.0 2.9e-11 43.6 0.0 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Na_H_Exchanger PF00999.16 gi|410671732|ref|YP_006924103.1| - 3.2e-78 262.9 53.0 4.2e-78 262.5 36.8 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|410671732|ref|YP_006924103.1| - 3.4e-24 85.0 1.6 4.4e-24 84.7 0.5 1.7 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|410671732|ref|YP_006924103.1| - 2.2e-13 49.5 0.1 1.1e-12 47.3 0.0 2.3 2 0 0 2 2 2 1 TrkA-C domain AlaDh_PNT_C PF01262.16 gi|410671732|ref|YP_006924103.1| - 0.048 13.2 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain CPSase_L_chain PF00289.17 gi|410671732|ref|YP_006924103.1| - 0.051 13.6 0.5 0.1 12.7 0.4 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain MTH865 PF07747.6 gi|410671734|ref|YP_006924104.1| - 1.4e-31 107.8 0.2 1.6e-31 107.7 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family HTH_20 PF12840.2 gi|410671735|ref|YP_006924106.1| - 2.3e-07 30.4 0.2 5e-07 29.4 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|410671735|ref|YP_006924106.1| - 1.3e-05 24.7 0.1 2.7e-05 23.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|410671735|ref|YP_006924106.1| - 0.00069 19.5 0.0 0.0017 18.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|410671735|ref|YP_006924106.1| - 0.0019 17.5 0.0 0.0042 16.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding LppC PF04348.8 gi|410671735|ref|YP_006924106.1| - 0.018 13.6 0.1 0.032 12.7 0.1 1.3 1 0 0 1 1 1 0 LppC putative lipoprotein Sulfolobus_pRN PF05584.6 gi|410671735|ref|YP_006924106.1| - 0.024 14.5 0.0 0.06 13.3 0.0 1.6 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_45 PF14947.1 gi|410671735|ref|YP_006924106.1| - 0.026 14.3 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix Mrr_N PF14338.1 gi|410671735|ref|YP_006924106.1| - 0.11 12.6 0.0 3.2 7.9 0.0 2.5 2 0 0 2 2 2 0 Mrr N-terminal domain DUF496 PF04363.7 gi|410671735|ref|YP_006924106.1| - 2.2 8.1 6.6 4.7 7.1 0.7 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF496) HEM4 PF02602.10 gi|410671736|ref|YP_006924107.1| - 1.1e-28 100.0 0.0 1.3e-28 99.8 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Peripla_BP_6 PF13458.1 gi|410671736|ref|YP_006924107.1| - 0.00046 19.6 0.1 0.00091 18.6 0.1 1.4 1 0 0 1 1 1 1 Periplasmic binding protein DUF4496 PF14908.1 gi|410671736|ref|YP_006924107.1| - 0.088 12.6 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4496) zinc_ribbon_6 PF14599.1 gi|410671737|ref|YP_006924108.1| - 0.013 15.2 0.7 0.024 14.4 0.5 1.4 1 1 0 1 1 1 0 Zinc-ribbon LIM PF00412.17 gi|410671737|ref|YP_006924108.1| - 0.097 12.7 1.0 0.14 12.2 0.7 1.2 1 0 0 1 1 1 0 LIM domain DNA_RNApol_7kD PF03604.8 gi|410671737|ref|YP_006924108.1| - 0.28 10.6 2.6 0.92 9.0 1.8 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit MS_channel PF00924.13 gi|410671738|ref|YP_006924109.1| - 7.2e-33 113.6 6.4 2e-32 112.2 4.4 1.7 1 1 0 1 1 1 1 Mechanosensitive ion channel DUF4159 PF13709.1 gi|410671738|ref|YP_006924109.1| - 0.13 11.3 0.4 0.28 10.2 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4159) HAD_2 PF13419.1 gi|410671739|ref|YP_006924110.1| - 2.2e-29 102.9 0.0 2.7e-29 102.6 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|410671739|ref|YP_006924110.1| - 2.3e-11 44.5 0.0 4e-11 43.7 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|410671739|ref|YP_006924110.1| - 1.1e-10 41.0 0.0 1.9e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Put_Phosphatase PF06888.7 gi|410671739|ref|YP_006924110.1| - 0.065 12.3 0.1 1.9 7.5 0.0 2.3 2 1 1 3 3 3 0 Putative Phosphatase APH PF01636.18 gi|410671740|ref|YP_006924111.1| - 3.9e-08 33.3 0.0 5.9e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.17 gi|410671740|ref|YP_006924111.1| - 0.0003 20.2 0.3 0.49 9.7 0.0 2.3 1 1 0 2 2 2 2 RIO1 family Pkinase_Tyr PF07714.12 gi|410671740|ref|YP_006924111.1| - 0.0032 16.5 0.9 0.0057 15.7 0.0 1.8 2 1 1 3 3 3 1 Protein tyrosine kinase EF1_GNE PF00736.14 gi|410671742|ref|YP_006924113.1| - 5.6e-21 74.0 0.1 5.9e-21 73.9 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain HMA PF00403.21 gi|410671742|ref|YP_006924113.1| - 0.035 14.2 0.9 0.091 12.9 0.2 1.9 2 0 0 2 2 2 0 Heavy-metal-associated domain AA_kinase PF00696.23 gi|410671744|ref|YP_006924115.1| - 3e-14 53.1 0.0 8.3e-12 45.1 0.0 2.1 1 1 0 1 1 1 1 Amino acid kinase family Hydantoinase_A PF01968.13 gi|410671745|ref|YP_006924116.1| - 2.2e-19 69.6 1.9 4e-18 65.5 0.1 2.4 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase MutL PF13941.1 gi|410671745|ref|YP_006924116.1| - 0.0039 15.5 0.2 0.57 8.4 0.0 2.2 2 0 0 2 2 2 2 MutL protein FtsA PF14450.1 gi|410671745|ref|YP_006924116.1| - 0.041 13.7 0.4 23 4.8 0.0 3.2 3 0 0 3 3 3 0 Cell division protein FtsA Hydant_A_N PF05378.8 gi|410671745|ref|YP_006924116.1| - 0.11 12.0 1.2 13 5.2 0.0 2.9 3 1 0 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region ATP-grasp_3 PF02655.9 gi|410671746|ref|YP_006924117.1| - 2.9e-41 141.0 0.0 3.8e-41 140.6 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|410671746|ref|YP_006924117.1| - 4.1e-10 39.6 0.0 2.9e-09 36.9 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|410671746|ref|YP_006924117.1| - 8e-10 37.9 0.0 6.2e-08 31.7 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon RimK PF08443.6 gi|410671746|ref|YP_006924117.1| - 0.0021 17.5 0.0 0.046 13.1 0.0 2.2 2 0 0 2 2 2 1 RimK-like ATP-grasp domain DUF3317 PF11779.3 gi|410671748|ref|YP_006924119.1| - 0.036 13.5 3.7 0.91 9.0 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3317) Acyl_transf_3 PF01757.17 gi|410671748|ref|YP_006924119.1| - 0.091 11.5 11.8 0.11 11.2 8.2 1.0 1 0 0 1 1 1 0 Acyltransferase family Keratin_assoc PF09775.4 gi|410671748|ref|YP_006924119.1| - 0.25 10.8 7.7 0.12 11.9 4.0 1.4 1 1 0 1 1 1 0 Keratinocyte-associated protein 2 BCHF PF07284.6 gi|410671748|ref|YP_006924119.1| - 0.29 10.9 8.8 0.61 9.9 6.1 1.6 1 1 0 1 1 1 0 2-vinyl bacteriochlorophyllide hydratase (BCHF) DUF2512 PF10710.4 gi|410671748|ref|YP_006924119.1| - 0.47 9.9 9.6 0.63 9.4 6.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2512) DUF3784 PF12650.2 gi|410671748|ref|YP_006924119.1| - 2.8 7.9 12.2 0.2 11.5 2.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) Sdh_cyt PF01127.17 gi|410671748|ref|YP_006924119.1| - 10 6.0 14.6 1.3 8.8 6.3 2.0 1 1 1 2 2 2 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit GrpE PF01025.14 gi|410671749|ref|YP_006924120.1| - 3e-57 192.7 2.7 3.3e-57 192.6 1.9 1.0 1 0 0 1 1 1 1 GrpE DUF148 PF02520.12 gi|410671749|ref|YP_006924120.1| - 0.015 15.1 2.1 0.042 13.6 1.2 1.8 1 1 1 2 2 2 0 Domain of unknown function DUF148 Vac_Fusion PF02346.11 gi|410671749|ref|YP_006924120.1| - 0.26 10.7 2.7 40 3.7 0.0 3.5 4 0 0 4 4 4 0 Chordopoxvirus fusion protein HSP70 PF00012.15 gi|410671750|ref|YP_006924121.1| - 1.2e-246 819.3 15.0 2.8e-244 811.5 10.4 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.8 gi|410671750|ref|YP_006924121.1| - 5.3e-19 67.9 2.0 2.3e-18 65.8 1.4 2.1 1 1 0 1 1 1 1 MreB/Mbl protein FtsA PF14450.1 gi|410671750|ref|YP_006924121.1| - 0.00057 19.7 11.7 0.32 10.8 0.6 4.9 3 2 0 3 3 3 2 Cell division protein FtsA FGGY_C PF02782.11 gi|410671750|ref|YP_006924121.1| - 0.0042 16.7 0.0 0.012 15.2 0.0 1.8 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain Hydantoinase_A PF01968.13 gi|410671750|ref|YP_006924121.1| - 0.014 14.4 0.1 0.014 14.4 0.0 3.5 4 1 0 4 4 4 0 Hydantoinase/oxoprolinase CTDII PF01556.13 gi|410671751|ref|YP_006924122.1| - 1.7e-29 101.5 0.6 6.3e-21 74.0 0.1 3.4 3 0 0 3 3 3 3 DnaJ C terminal domain DnaJ PF00226.26 gi|410671751|ref|YP_006924122.1| - 3.6e-29 100.2 5.0 8.3e-29 99.1 3.5 1.7 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|410671751|ref|YP_006924122.1| - 4.4e-17 61.8 14.0 7.8e-17 61.0 9.7 1.4 1 0 0 1 1 1 1 DnaJ central domain Cytochrom_c3_2 PF14537.1 gi|410671751|ref|YP_006924122.1| - 1.4 9.3 6.5 3.1 8.1 4.3 1.7 1 1 0 1 1 1 0 Cytochrome c3 DZR PF12773.2 gi|410671751|ref|YP_006924122.1| - 4.5 7.1 10.0 0.63 9.9 1.4 2.3 2 0 0 2 2 2 0 Double zinc ribbon Cytochrome_C7 PF14522.1 gi|410671751|ref|YP_006924122.1| - 6.3 6.5 9.0 32 4.2 6.3 2.1 1 1 0 1 1 1 0 Cytochrome c7 TrkA_N PF02254.13 gi|410671752|ref|YP_006924123.1| - 4.8e-54 181.3 8.8 9.9e-28 96.4 0.3 2.5 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|410671752|ref|YP_006924123.1| - 5.9e-32 109.0 0.5 2.7e-16 58.9 0.0 3.2 3 0 0 3 3 3 2 TrkA-C domain Shikimate_DH PF01488.15 gi|410671752|ref|YP_006924123.1| - 4.7e-11 42.9 4.1 0.00016 21.7 0.1 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|410671752|ref|YP_006924123.1| - 1.2e-09 38.3 6.5 0.00029 21.0 0.6 2.7 3 0 0 3 3 2 2 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|410671752|ref|YP_006924123.1| - 9.3e-09 35.6 5.1 0.0025 18.1 0.4 3.6 3 1 0 3 3 3 2 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|410671752|ref|YP_006924123.1| - 1.4e-08 34.6 0.9 0.001 18.8 0.0 2.5 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|410671752|ref|YP_006924123.1| - 8.8e-07 28.4 2.3 0.0015 17.9 0.1 2.7 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Saccharop_dh PF03435.13 gi|410671752|ref|YP_006924123.1| - 4.3e-06 25.9 3.1 0.0024 16.8 0.4 3.0 2 1 1 3 3 3 2 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|410671752|ref|YP_006924123.1| - 5.1e-06 26.2 3.8 0.01 15.4 0.4 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|410671752|ref|YP_006924123.1| - 1.1e-05 25.5 4.0 0.014 15.3 0.6 2.3 2 0 0 2 2 2 2 NADH(P)-binding Pyr_redox_2 PF07992.9 gi|410671752|ref|YP_006924123.1| - 2.1e-05 24.5 6.8 0.0067 16.3 1.2 2.7 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|410671752|ref|YP_006924123.1| - 2.3e-05 24.7 0.1 0.29 11.4 0.0 2.4 2 0 0 2 2 2 2 XdhC Rossmann domain NAD_binding_2 PF03446.10 gi|410671752|ref|YP_006924123.1| - 2.4e-05 24.2 0.7 0.17 11.7 0.1 2.7 2 0 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.22 gi|410671752|ref|YP_006924123.1| - 5e-05 23.6 3.9 0.22 11.9 0.4 3.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.8 gi|410671752|ref|YP_006924123.1| - 6.7e-05 22.2 5.2 0.082 12.1 0.2 2.4 2 0 0 2 2 2 2 NmrA-like family ApbA PF02558.11 gi|410671752|ref|YP_006924123.1| - 0.00021 20.7 2.3 0.1 12.0 0.1 2.8 3 0 0 3 3 3 2 Ketopantoate reductase PanE/ApbA ADH_zinc_N PF00107.21 gi|410671752|ref|YP_006924123.1| - 0.00041 19.8 0.4 0.057 12.9 0.0 3.0 2 0 0 2 2 2 1 Zinc-binding dehydrogenase DapB_N PF01113.15 gi|410671752|ref|YP_006924123.1| - 0.00061 19.7 4.1 0.082 12.8 0.2 2.9 2 1 0 2 2 2 2 Dihydrodipicolinate reductase, N-terminus NAD_binding_8 PF13450.1 gi|410671752|ref|YP_006924123.1| - 0.00067 19.6 0.3 0.082 12.9 0.0 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain OCD_Mu_crystall PF02423.10 gi|410671752|ref|YP_006924123.1| - 0.0007 18.4 0.9 0.17 10.6 0.0 2.2 2 0 0 2 2 2 2 Ornithine cyclodeaminase/mu-crystallin family FAD_binding_3 PF01494.14 gi|410671752|ref|YP_006924123.1| - 0.00085 18.4 0.2 0.22 10.5 0.0 2.4 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.19 gi|410671752|ref|YP_006924123.1| - 0.0012 17.8 0.4 0.8 8.5 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.14 gi|410671752|ref|YP_006924123.1| - 0.0012 18.0 2.2 0.65 9.1 0.1 2.7 2 1 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|410671752|ref|YP_006924123.1| - 0.0013 18.4 0.0 0.56 9.9 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|410671752|ref|YP_006924123.1| - 0.0015 18.1 1.2 0.12 11.8 0.0 2.7 3 0 0 3 3 2 1 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.9 gi|410671752|ref|YP_006924123.1| - 0.0022 16.5 0.7 0.53 8.6 0.0 2.4 2 0 0 2 2 2 2 HI0933-like protein GFO_IDH_MocA PF01408.17 gi|410671752|ref|YP_006924123.1| - 0.0026 18.2 0.2 0.82 10.1 0.0 2.6 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Rossmann-like PF10727.4 gi|410671752|ref|YP_006924123.1| - 0.0027 17.4 1.9 0.73 9.5 0.7 3.0 2 1 1 3 3 3 1 Rossmann-like domain CPSase_L_chain PF00289.17 gi|410671752|ref|YP_006924123.1| - 0.0064 16.5 1.8 0.13 12.3 0.3 2.6 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain ThiF PF00899.16 gi|410671752|ref|YP_006924123.1| - 0.0082 15.9 1.1 0.2 11.4 0.0 2.9 3 0 0 3 3 3 1 ThiF family Trp_halogenase PF04820.9 gi|410671752|ref|YP_006924123.1| - 0.0084 14.7 0.2 2.5 6.6 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase DUF1188 PF06690.6 gi|410671752|ref|YP_006924123.1| - 0.03 13.4 4.4 0.88 8.6 0.0 2.5 3 0 0 3 3 2 0 Protein of unknown function (DUF1188) adh_short PF00106.20 gi|410671752|ref|YP_006924123.1| - 0.039 13.8 0.6 0.09 12.6 0.4 1.6 1 0 0 1 1 1 0 short chain dehydrogenase Lycopene_cycl PF05834.7 gi|410671752|ref|YP_006924123.1| - 0.08 11.8 0.1 3.4 6.5 0.0 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein Peptidase_C23 PF05379.6 gi|410671752|ref|YP_006924123.1| - 0.12 12.3 1.0 0.93 9.5 0.1 2.7 2 0 0 2 2 2 0 Carlavirus endopeptidase TrkH PF02386.11 gi|410671753|ref|YP_006924124.1| - 1.4e-57 194.8 21.8 1.4e-57 194.8 15.1 2.1 1 1 1 2 2 2 1 Cation transport protein PufQ PF05398.6 gi|410671753|ref|YP_006924124.1| - 0.041 13.9 0.1 0.16 12.0 0.1 2.0 1 0 0 1 1 1 0 PufQ cytochrome subunit Peptidase_M50 PF02163.17 gi|410671753|ref|YP_006924124.1| - 4.9 6.0 8.0 1.1 8.1 0.9 3.1 2 2 0 2 2 2 0 Peptidase family M50 FAD_binding_3 PF01494.14 gi|410671754|ref|YP_006924125.1| - 1.1e-14 54.3 1.3 8.5e-06 25.0 0.0 3.0 3 0 0 3 3 3 2 FAD binding domain FAD_binding_2 PF00890.19 gi|410671754|ref|YP_006924125.1| - 5.2e-11 42.0 2.9 3.7e-08 32.6 0.2 2.2 1 1 1 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|410671754|ref|YP_006924125.1| - 6.8e-11 41.8 2.5 2.6e-10 39.9 1.8 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|410671754|ref|YP_006924125.1| - 7.2e-09 35.0 2.6 4.2e-05 22.6 0.2 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|410671754|ref|YP_006924125.1| - 5.2e-07 28.9 0.1 0.00023 20.2 0.2 2.3 2 1 0 2 2 2 2 Lycopene cyclase protein Thi4 PF01946.12 gi|410671754|ref|YP_006924125.1| - 1e-06 28.0 0.6 8.8e-05 21.7 0.1 2.2 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|410671754|ref|YP_006924125.1| - 1.5e-06 27.0 0.4 2.7e-06 26.1 0.3 1.4 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|410671754|ref|YP_006924125.1| - 1.5e-06 28.1 0.0 5.6e-06 26.2 0.0 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|410671754|ref|YP_006924125.1| - 4.4e-06 25.8 0.2 1.7e-05 23.9 0.1 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|410671754|ref|YP_006924125.1| - 9.5e-06 25.6 6.6 2e-05 24.5 4.6 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|410671754|ref|YP_006924125.1| - 0.0013 17.4 0.3 0.32 9.5 0.0 2.2 1 1 1 2 2 2 2 Tryptophan halogenase 3HCDH_N PF02737.13 gi|410671754|ref|YP_006924125.1| - 0.0086 15.7 0.0 0.021 14.4 0.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|410671754|ref|YP_006924125.1| - 0.0091 16.0 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|410671754|ref|YP_006924125.1| - 0.024 15.0 0.1 0.024 15.0 0.0 2.7 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.13 gi|410671754|ref|YP_006924125.1| - 0.04 12.2 0.0 0.07 11.4 0.0 1.4 1 0 0 1 1 1 0 GDP dissociation inhibitor SE PF08491.5 gi|410671754|ref|YP_006924125.1| - 0.12 11.2 0.1 0.31 9.8 0.1 1.6 2 0 0 2 2 2 0 Squalene epoxidase Fer4 PF00037.22 gi|410671755|ref|YP_006924126.1| - 5.9e-15 54.1 16.7 1.9e-07 30.3 2.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|410671755|ref|YP_006924126.1| - 3.2e-10 40.5 10.6 5.2e-05 23.9 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|410671755|ref|YP_006924126.1| - 4e-10 39.9 12.0 8e-10 38.9 8.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410671755|ref|YP_006924126.1| - 9.7e-10 37.8 14.6 9.6e-06 25.2 3.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|410671755|ref|YP_006924126.1| - 1.2e-09 38.3 10.3 9.1e-05 22.6 1.3 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410671755|ref|YP_006924126.1| - 1.1e-08 34.6 24.8 9e-07 28.5 9.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410671755|ref|YP_006924126.1| - 4.6e-07 29.3 13.9 0.0022 17.8 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|410671755|ref|YP_006924126.1| - 5.7e-07 29.3 12.6 3e-06 26.9 8.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410671755|ref|YP_006924126.1| - 3.5e-06 26.8 13.4 0.0085 16.3 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|410671755|ref|YP_006924126.1| - 3.7e-06 26.8 12.9 4.1e-05 23.5 8.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|410671755|ref|YP_006924126.1| - 0.00012 22.4 11.1 0.025 15.0 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|410671755|ref|YP_006924126.1| - 0.00016 22.1 12.5 0.017 15.6 0.4 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|410671755|ref|YP_006924126.1| - 0.00027 21.2 22.9 0.017 15.6 4.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|410671755|ref|YP_006924126.1| - 0.00084 19.6 13.5 0.056 13.7 2.0 2.1 1 1 1 3 3 3 3 4Fe-4S dicluster domain Desulfoferrod_N PF06397.7 gi|410671755|ref|YP_006924126.1| - 0.0013 18.0 1.7 0.0013 18.0 1.2 2.1 2 0 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain Fer4_13 PF13370.1 gi|410671755|ref|YP_006924126.1| - 0.0018 18.5 14.7 0.15 12.4 0.9 2.3 2 1 0 2 2 2 2 4Fe-4S single cluster domain C1_1 PF00130.17 gi|410671755|ref|YP_006924126.1| - 0.091 12.5 4.3 0.81 9.4 0.2 2.1 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Fer4_11 PF13247.1 gi|410671755|ref|YP_006924126.1| - 1.4 8.8 6.9 2.8 7.9 0.4 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain zf-BED PF02892.10 gi|410671755|ref|YP_006924126.1| - 2 8.2 5.9 1.9 8.2 0.8 2.1 2 0 0 2 2 2 0 BED zinc finger Fer4_19 PF06902.6 gi|410671755|ref|YP_006924126.1| - 3.5 7.5 11.1 63 3.5 7.7 2.8 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster zf-Paramyx-P PF13008.2 gi|410671755|ref|YP_006924126.1| - 3.6 6.8 9.9 4 6.7 0.9 2.1 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein CofC PF01983.11 gi|410671756|ref|YP_006924127.1| - 1.9e-50 170.8 0.2 2.2e-50 170.6 0.1 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|410671756|ref|YP_006924127.1| - 0.0017 18.4 0.0 0.002 18.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF2064 PF09837.4 gi|410671756|ref|YP_006924127.1| - 0.042 13.4 0.0 0.069 12.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) Radical_SAM PF04055.16 gi|410671757|ref|YP_006924128.1| - 5.2e-16 59.2 0.0 8.9e-16 58.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|410671758|ref|YP_006924129.1| - 1.7e-18 67.3 0.1 2.5e-18 66.8 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|410671759|ref|YP_006924130.1| - 3.8e-13 49.9 0.1 7.6e-13 48.9 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily NAD_binding_8 PF13450.1 gi|410671760|ref|YP_006924131.1| - 1.5e-12 47.3 0.1 5.8e-12 45.4 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|410671760|ref|YP_006924131.1| - 2.3e-09 36.8 0.0 1e-08 34.7 0.0 2.0 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase DAO PF01266.19 gi|410671760|ref|YP_006924131.1| - 5.9e-06 25.4 1.8 0.027 13.3 0.3 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|410671760|ref|YP_006924131.1| - 1.4e-05 25.0 0.0 0.0031 17.4 0.0 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|410671760|ref|YP_006924131.1| - 3.1e-05 23.0 1.7 0.00082 18.3 0.1 2.8 3 0 0 3 3 3 1 FAD binding domain HI0933_like PF03486.9 gi|410671760|ref|YP_006924131.1| - 7.2e-05 21.4 1.2 0.0022 16.5 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.22 gi|410671760|ref|YP_006924131.1| - 0.0022 18.3 2.6 0.012 15.9 0.2 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|410671760|ref|YP_006924131.1| - 0.0032 17.5 0.1 0.036 14.1 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|410671760|ref|YP_006924131.1| - 0.028 13.4 1.0 0.031 13.3 0.1 1.4 2 0 0 2 2 2 0 FAD dependent oxidoreductase GIDA PF01134.17 gi|410671760|ref|YP_006924131.1| - 0.033 13.0 0.4 0.076 11.8 0.0 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|410671760|ref|YP_006924131.1| - 0.039 12.9 0.4 0.12 11.4 0.1 1.9 2 0 0 2 2 2 0 FAD binding domain NAD_binding_9 PF13454.1 gi|410671760|ref|YP_006924131.1| - 0.074 12.8 4.2 1.5 8.5 0.0 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding Thi4 PF01946.12 gi|410671760|ref|YP_006924131.1| - 0.13 11.2 2.4 0.33 10.0 0.1 2.2 2 0 0 2 2 2 0 Thi4 family Fer4 PF00037.22 gi|410671761|ref|YP_006924132.1| - 7.3e-13 47.5 17.0 1.9e-06 27.2 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|410671761|ref|YP_006924132.1| - 4.6e-09 35.8 15.1 0.00026 21.0 2.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|410671761|ref|YP_006924132.1| - 2.4e-08 34.0 13.2 0.00026 21.1 1.9 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410671761|ref|YP_006924132.1| - 7e-08 32.2 12.1 1.2e-07 31.4 8.4 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410671761|ref|YP_006924132.1| - 4.1e-07 29.5 16.1 0.00099 18.8 3.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|410671761|ref|YP_006924132.1| - 8.6e-07 29.2 15.7 3.1e-05 24.2 11.2 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|410671761|ref|YP_006924132.1| - 3e-06 27.5 12.1 0.0029 18.0 1.8 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410671761|ref|YP_006924132.1| - 4.5e-06 27.3 11.7 0.004 17.8 2.6 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|410671761|ref|YP_006924132.1| - 5.1e-06 26.2 25.0 7.2e-05 22.5 9.4 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410671761|ref|YP_006924132.1| - 1.4e-05 24.7 15.7 0.0054 16.5 3.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|410671761|ref|YP_006924132.1| - 8.6e-05 22.4 14.2 0.0028 17.6 9.9 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410671761|ref|YP_006924132.1| - 0.0011 19.2 14.7 0.044 14.1 2.3 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|410671761|ref|YP_006924132.1| - 0.0056 17.1 20.1 0.1 13.1 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|410671761|ref|YP_006924132.1| - 0.01 16.2 14.1 0.2 12.0 1.4 2.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|410671761|ref|YP_006924132.1| - 0.95 10.0 18.0 2.7e+03 -1.0 12.5 2.6 1 1 0 1 1 1 0 4Fe-4S single cluster domain LRV_FeS PF05484.6 gi|410671761|ref|YP_006924132.1| - 1.2 8.8 5.7 2.6 7.6 3.9 1.7 1 1 0 1 1 1 0 LRV protein FeS4 cluster Stig1 PF04885.8 gi|410671761|ref|YP_006924132.1| - 1.6 8.9 10.3 1.9 8.7 7.1 1.1 1 0 0 1 1 1 0 Stigma-specific protein, Stig1 C1_1 PF00130.17 gi|410671761|ref|YP_006924132.1| - 4.5 7.0 8.9 6.2 6.6 6.2 1.4 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HTH_AsnC-type PF13404.1 gi|410671762|ref|YP_006924133.1| - 2.3e-11 43.0 0.0 3.6e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|410671762|ref|YP_006924133.1| - 2.8e-10 39.3 0.0 4.8e-10 38.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|410671762|ref|YP_006924133.1| - 1.4e-09 37.4 0.0 2.2e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|410671762|ref|YP_006924133.1| - 0.00056 19.5 0.0 0.0011 18.5 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|410671762|ref|YP_006924133.1| - 0.00077 19.2 0.0 0.0013 18.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|410671762|ref|YP_006924133.1| - 0.0046 16.6 0.0 0.0084 15.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|410671762|ref|YP_006924133.1| - 0.0083 15.6 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|410671762|ref|YP_006924133.1| - 0.01 15.7 0.3 0.023 14.6 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_CodY PF08222.6 gi|410671762|ref|YP_006924133.1| - 0.024 13.9 0.0 0.054 12.8 0.0 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_DeoR PF08220.7 gi|410671762|ref|YP_006924133.1| - 0.037 13.5 0.0 0.079 12.5 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|410671762|ref|YP_006924133.1| - 0.046 13.4 0.0 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|410671762|ref|YP_006924133.1| - 0.047 13.3 0.0 0.078 12.6 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF188 PF02639.9 gi|410671762|ref|YP_006924133.1| - 0.054 12.9 0.0 0.088 12.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 DUF2250 PF10007.4 gi|410671762|ref|YP_006924133.1| - 0.058 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_10 PF04967.7 gi|410671762|ref|YP_006924133.1| - 0.12 12.0 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_Tnp_ISL3 PF13542.1 gi|410671762|ref|YP_006924133.1| - 0.14 11.4 0.1 0.22 10.7 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF22 PF01629.11 gi|410671763|ref|YP_006924134.1| - 3.3e-26 90.9 1.0 4.4e-26 90.5 0.6 1.3 1 1 0 1 1 1 1 Domain of unknown function DUF22 DUF35_N PF12172.3 gi|410671764|ref|YP_006924135.1| - 0.0018 18.0 1.0 1.6 8.7 0.0 2.9 3 0 0 3 3 3 2 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.7 gi|410671764|ref|YP_006924135.1| - 0.0022 17.3 8.0 0.52 9.6 0.6 3.3 3 0 0 3 3 3 2 TFIIB zinc-binding zf-C4_Topoisom PF01396.14 gi|410671764|ref|YP_006924135.1| - 0.01 15.3 0.5 0.027 13.9 0.3 1.7 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger Lar_restr_allev PF14354.1 gi|410671764|ref|YP_006924135.1| - 0.021 15.1 0.5 0.021 15.1 0.4 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar zf-piccolo PF05715.8 gi|410671764|ref|YP_006924135.1| - 0.077 13.0 2.4 2.4 8.2 0.1 2.5 2 0 0 2 2 2 0 Piccolo Zn-finger zinc_ribbon_2 PF13240.1 gi|410671764|ref|YP_006924135.1| - 0.18 11.3 0.1 0.18 11.3 0.0 2.6 3 1 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|410671764|ref|YP_006924135.1| - 0.33 10.2 9.6 1.7 7.9 0.1 3.4 3 1 0 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|410671764|ref|YP_006924135.1| - 1 9.2 7.1 1.1 9.1 0.5 2.8 2 2 0 2 2 2 0 Double zinc ribbon zf-CHY PF05495.7 gi|410671764|ref|YP_006924135.1| - 1.5 9.0 7.2 1.2 9.3 0.4 2.3 2 0 0 2 2 2 0 CHY zinc finger DUF4428 PF14471.1 gi|410671764|ref|YP_006924135.1| - 2.4 7.9 4.6 21 4.9 0.0 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4428) Auto_anti-p27 PF06677.7 gi|410671764|ref|YP_006924135.1| - 3.2 7.6 0.0 3.2 7.6 0.0 3.1 3 1 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Sgf11 PF08209.6 gi|410671764|ref|YP_006924135.1| - 6.4 6.1 8.2 4.4 6.6 0.1 3.0 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) Prok-RING_2 PF14445.1 gi|410671764|ref|YP_006924135.1| - 7.5 6.5 11.6 4.6 7.2 0.7 2.9 3 0 0 3 3 3 0 Prokaryotic RING finger family 2 Arc_trans_TRASH PF08394.5 gi|410671764|ref|YP_006924135.1| - 7.6 6.7 8.7 4.2 7.6 0.7 2.9 3 0 0 3 3 3 0 Archaeal TRASH domain zf-C4 PF00105.13 gi|410671764|ref|YP_006924135.1| - 8.5 6.6 10.2 0.42 10.8 1.2 2.7 2 2 0 2 2 2 0 Zinc finger, C4 type (two domains) ABM PF03992.11 gi|410671765|ref|YP_006924136.1| - 2.4e-05 24.2 0.1 3.6e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 Antibiotic biosynthesis monooxygenase Oxidored_q4 PF00507.14 gi|410671766|ref|YP_006924137.1| - 1.1e-24 86.1 6.5 1.6e-24 85.6 4.4 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TRAM_LAG1_CLN8 PF03798.11 gi|410671766|ref|YP_006924137.1| - 0.076 12.5 7.7 0.082 12.4 5.1 1.3 1 1 0 1 1 1 0 TLC domain TcpE PF12648.2 gi|410671766|ref|YP_006924137.1| - 2.5 8.3 8.1 5.7 7.1 0.1 2.3 2 0 0 2 2 2 0 TcpE family Oxidored_q6 PF01058.17 gi|410671767|ref|YP_006924138.1| - 1e-22 80.1 0.0 1.4e-22 79.7 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.14 gi|410671768|ref|YP_006924139.1| - 1e-32 112.4 0.0 5.7e-32 110.0 0.0 1.9 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Complex1_49kDa PF00346.14 gi|410671769|ref|YP_006924140.1| - 1.6e-74 250.3 0.1 1.4e-50 171.8 0.1 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|410671769|ref|YP_006924140.1| - 2.2e-09 36.6 0.0 8.9e-08 31.3 0.0 2.1 2 0 0 2 2 2 2 Nickel-dependent hydrogenase NADHdh PF00146.16 gi|410671770|ref|YP_006924141.1| - 3.6e-93 312.0 18.0 4.6e-93 311.6 12.5 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|410671771|ref|YP_006924142.1| - 2.4e-14 52.2 15.6 3.1e-09 36.0 2.4 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|410671771|ref|YP_006924142.1| - 2.6e-11 43.7 7.9 5.4e-11 42.6 5.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410671771|ref|YP_006924142.1| - 4.5e-11 42.3 16.9 1.5e-08 34.3 6.9 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410671771|ref|YP_006924142.1| - 1.8e-09 37.7 7.5 1.8e-09 37.7 5.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410671771|ref|YP_006924142.1| - 5.9e-09 36.5 6.6 0.0002 21.9 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|410671771|ref|YP_006924142.1| - 7.8e-09 35.4 6.0 1.7e-08 34.3 4.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410671771|ref|YP_006924142.1| - 1.5e-08 34.3 7.5 2.8e-08 33.4 5.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410671771|ref|YP_006924142.1| - 7.1e-08 31.9 14.6 8.5e-05 22.2 2.0 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|410671771|ref|YP_006924142.1| - 7.7e-08 31.8 10.7 1.1e-05 25.1 2.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|410671771|ref|YP_006924142.1| - 2.4e-05 24.2 13.5 0.0026 17.9 1.9 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|410671771|ref|YP_006924142.1| - 6.6e-05 23.1 10.8 0.001 19.3 7.0 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|410671771|ref|YP_006924142.1| - 0.0001 22.6 12.6 0.0074 16.6 2.7 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|410671771|ref|YP_006924142.1| - 0.00046 20.6 9.0 0.0009 19.7 0.4 2.6 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|410671771|ref|YP_006924142.1| - 0.00054 20.3 20.5 0.023 15.2 1.9 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|410671771|ref|YP_006924142.1| - 0.0024 18.2 10.8 0.0034 17.7 1.9 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|410671771|ref|YP_006924142.1| - 0.23 11.3 3.4 3 7.7 2.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Oxidored_q3 PF00499.15 gi|410671772|ref|YP_006924143.1| - 2.4e-16 59.8 9.8 2.4e-16 59.8 6.8 1.4 2 0 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|410671772|ref|YP_006924143.1| - 0.16 11.9 16.3 0.26 11.3 11.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4040) DUF3165 PF11364.3 gi|410671772|ref|YP_006924143.1| - 0.22 11.6 14.7 0.45 10.6 10.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3165) UNC-93 PF05978.11 gi|410671772|ref|YP_006924143.1| - 0.35 10.3 5.8 0.39 10.1 4.1 1.1 1 0 0 1 1 1 0 Ion channel regulatory protein UNC-93 HlyIII PF03006.15 gi|410671772|ref|YP_006924143.1| - 0.39 10.0 9.8 0.48 9.7 6.8 1.1 1 0 0 1 1 1 0 Haemolysin-III related Claudin_2 PF13903.1 gi|410671772|ref|YP_006924143.1| - 1.3 8.6 13.9 1.7 8.3 9.6 1.2 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF4239 PF14023.1 gi|410671772|ref|YP_006924143.1| - 5 6.4 8.0 4.2 6.6 5.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4239) Herpes_LMP1 PF05297.6 gi|410671772|ref|YP_006924143.1| - 9.5 5.0 9.9 10 4.9 6.8 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Oxidored_q3 PF00499.15 gi|410671773|ref|YP_006924144.1| - 0.00072 19.3 8.8 0.0018 18.0 6.1 1.6 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 GAS2 PF02187.12 gi|410671773|ref|YP_006924144.1| - 0.077 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Growth-Arrest-Specific Protein 2 Domain CAAD PF14159.1 gi|410671773|ref|YP_006924144.1| - 0.24 11.0 5.0 0.13 11.8 2.0 1.8 1 1 1 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase DUF2393 PF09624.5 gi|410671773|ref|YP_006924144.1| - 0.76 9.2 2.7 0.52 9.8 1.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2393) DUF4131 PF13567.1 gi|410671773|ref|YP_006924144.1| - 1 8.7 3.7 1.4 8.3 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) OppC_N PF12911.2 gi|410671773|ref|YP_006924144.1| - 2.9 7.3 6.0 0.58 9.5 0.1 2.5 2 1 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Oxidored_q2 PF00420.19 gi|410671774|ref|YP_006924145.1| - 5.1e-23 80.4 7.4 5.7e-23 80.3 5.1 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Oxidored_q1 PF00361.15 gi|410671775|ref|YP_006924146.1| - 2.7e-76 256.3 19.1 2.7e-76 256.3 13.2 3.2 3 1 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|410671775|ref|YP_006924146.1| - 5.1e-13 48.3 2.0 5.1e-13 48.3 1.4 3.2 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1_C PF01010.14 gi|410671775|ref|YP_006924146.1| - 0.00096 18.7 0.8 0.0023 17.4 0.5 1.7 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus Oxidored_q1 PF00361.15 gi|410671776|ref|YP_006924147.1| - 3.4e-62 210.1 28.5 3.4e-62 210.1 19.7 2.3 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|410671777|ref|YP_006924148.1| - 1.4e-61 208.1 22.1 1.4e-61 208.1 15.3 3.0 2 2 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Bacillus_PapR PF05968.6 gi|410671777|ref|YP_006924148.1| - 0.18 11.9 5.1 0.86 9.7 0.4 3.1 2 0 0 2 2 2 0 Bacillus PapR protein FpoO PF10621.4 gi|410671778|ref|YP_006924149.1| - 1.6e-33 115.2 0.5 1.8e-33 115.1 0.4 1.0 1 0 0 1 1 1 1 F420H2 dehydrogenase subunit FpoO DZR PF12773.2 gi|410671778|ref|YP_006924149.1| - 0.0038 17.0 2.6 0.71 9.7 0.4 2.6 1 1 1 2 2 2 2 Double zinc ribbon DUF3268 PF11672.3 gi|410671778|ref|YP_006924149.1| - 0.13 12.3 2.2 0.24 11.5 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3268) DnaJ_CXXCXGXG PF00684.14 gi|410671778|ref|YP_006924149.1| - 0.25 11.4 5.1 0.29 11.2 1.5 2.2 2 0 0 2 2 2 0 DnaJ central domain DUF4428 PF14471.1 gi|410671778|ref|YP_006924149.1| - 1.9 8.2 7.2 4.1 7.2 1.2 3.3 3 1 0 3 3 3 0 Domain of unknown function (DUF4428) Tnp_zf-ribbon_2 PF13842.1 gi|410671778|ref|YP_006924149.1| - 7.1 7.1 11.8 0.88 10.0 1.9 3.4 3 1 1 4 4 4 0 DDE_Tnp_1-like zinc-ribbon DUF2795 PF11387.3 gi|410671779|ref|YP_006924150.1| - 1.3e-07 31.3 0.1 2.2e-07 30.5 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2795) DIOX_N PF14226.1 gi|410671779|ref|YP_006924150.1| - 0.014 15.9 0.0 0.017 15.6 0.0 1.3 1 1 0 1 1 1 0 non-haem dioxygenase in morphine synthesis N-terminal Spt20 PF12090.3 gi|410671779|ref|YP_006924150.1| - 0.089 12.1 0.0 0.089 12.1 0.0 1.1 1 0 0 1 1 1 0 Spt20 family Gp_dh_C PF02800.15 gi|410671779|ref|YP_006924150.1| - 0.16 11.4 0.4 0.19 11.1 0.3 1.2 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Ion_trans PF00520.26 gi|410671780|ref|YP_006924151.1| - 1.1e-05 24.8 15.9 1.1e-05 24.8 11.0 2.4 2 1 0 2 2 2 1 Ion transport protein Ion_trans_2 PF07885.11 gi|410671780|ref|YP_006924151.1| - 6.4e-05 22.5 10.0 6.4e-05 22.5 6.9 1.8 2 1 0 2 2 2 1 Ion channel Lig_chan PF00060.21 gi|410671780|ref|YP_006924151.1| - 0.0032 17.1 0.2 0.0032 17.1 0.1 1.6 2 0 0 2 2 2 1 Ligand-gated ion channel PRC PF05239.11 gi|410671782|ref|YP_006924153.1| - 1.9e-17 62.9 0.1 4.2e-17 61.7 0.1 1.6 1 0 0 1 1 1 1 PRC-barrel domain Hemerythrin PF01814.18 gi|410671782|ref|YP_006924153.1| - 1.4e-13 51.1 4.7 2e-13 50.6 3.2 1.2 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain Orbi_NS1 PF01718.11 gi|410671782|ref|YP_006924153.1| - 0.049 11.6 0.6 0.061 11.3 0.4 1.1 1 0 0 1 1 1 0 Orbivirus non-structural protein NS1, or hydrophobic tubular protein DUF3198 PF11433.3 gi|410671782|ref|YP_006924153.1| - 0.059 13.2 0.1 0.2 11.5 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3198) PRC PF05239.11 gi|410671783|ref|YP_006924154.1| - 7.2e-17 61.0 0.4 1.3e-16 60.2 0.3 1.4 1 0 0 1 1 1 1 PRC-barrel domain Hemerythrin PF01814.18 gi|410671783|ref|YP_006924154.1| - 1.9e-13 50.7 5.8 3e-13 50.0 4.0 1.3 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain GntP_permease PF02447.11 gi|410671784|ref|YP_006924155.1| - 5.5e-55 186.6 41.0 7e-55 186.2 28.4 1.1 1 0 0 1 1 1 1 GntP family permease Pox_G7 PF05503.7 gi|410671784|ref|YP_006924155.1| - 0.015 13.9 0.1 2.7 6.5 0.0 2.2 2 0 0 2 2 2 0 Poxvirus G7-like GntP_permease PF02447.11 gi|410671786|ref|YP_006924157.1| - 3.7e-11 42.1 8.9 4.1e-11 42.0 6.2 1.0 1 0 0 1 1 1 1 GntP family permease Acyl_transf_3 PF01757.17 gi|410671786|ref|YP_006924157.1| - 0.056 12.2 3.7 0.061 12.1 2.6 1.0 1 0 0 1 1 1 0 Acyltransferase family Na_H_antiport_2 PF13726.1 gi|410671786|ref|YP_006924157.1| - 0.15 11.9 5.8 0.21 11.4 4.0 1.4 1 1 0 1 1 1 0 Na+-H+ antiporter family 7TM-7TMR_HD PF07698.6 gi|410671786|ref|YP_006924157.1| - 0.25 10.7 6.4 0.31 10.4 4.5 1.1 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase OAD_gamma PF04277.8 gi|410671786|ref|YP_006924157.1| - 0.25 11.7 0.3 0.25 11.7 0.2 2.0 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain CitMHS PF03600.11 gi|410671786|ref|YP_006924157.1| - 0.33 9.4 6.4 0.39 9.2 4.4 1.0 1 0 0 1 1 1 0 Citrate transporter CheC PF04509.7 gi|410671790|ref|YP_006924161.1| - 4.1e-15 55.2 0.8 1.1e-07 31.3 0.1 2.3 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|410671790|ref|YP_006924161.1| - 5.4e-09 35.7 0.3 1e-07 31.7 0.1 2.2 2 0 0 2 2 2 1 Chemotaxis phosphatase CheX DUF3795 PF12675.2 gi|410671791|ref|YP_006924162.1| - 6.3e-05 23.0 17.2 0.00013 22.1 11.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3795) DUF998 PF06197.8 gi|410671791|ref|YP_006924162.1| - 0.0031 16.8 4.7 0.0048 16.2 3.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF998) CheD PF03975.8 gi|410671792|ref|YP_006924163.1| - 2.1e-34 117.6 0.1 2.4e-34 117.5 0.1 1.0 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.7 gi|410671793|ref|YP_006924164.1| - 7.1e-20 70.4 0.7 7.2e-10 38.4 0.1 2.4 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|410671793|ref|YP_006924164.1| - 1.2e-09 37.9 1.6 5e-06 26.2 0.0 2.5 2 1 1 3 3 3 2 Chemotaxis phosphatase CheX CheC PF04509.7 gi|410671794|ref|YP_006924165.1| - 3.7e-23 80.9 0.7 8.5e-13 47.8 0.1 2.4 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|410671794|ref|YP_006924165.1| - 1.4e-13 50.5 2.4 6.8e-09 35.4 0.1 2.5 3 0 0 3 3 3 2 Chemotaxis phosphatase CheX CheR PF01739.13 gi|410671795|ref|YP_006924166.1| - 9.7e-55 184.8 0.0 1.4e-54 184.3 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|410671795|ref|YP_006924166.1| - 1.4e-13 49.9 0.4 2.3e-13 49.2 0.3 1.4 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.7 gi|410671795|ref|YP_006924166.1| - 0.00023 21.5 0.1 0.0025 18.2 0.1 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410671795|ref|YP_006924166.1| - 0.0021 18.6 0.0 0.0041 17.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PA28_beta PF02252.13 gi|410671795|ref|YP_006924166.1| - 0.005 16.3 0.2 0.0095 15.4 0.1 1.4 1 0 0 1 1 1 1 Proteasome activator pa28 beta subunit Methyltransf_31 PF13847.1 gi|410671795|ref|YP_006924166.1| - 0.017 14.6 0.3 1.6 8.2 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|410671795|ref|YP_006924166.1| - 0.1 12.9 0.0 0.22 11.9 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain FtsA PF14450.1 gi|410671796|ref|YP_006924167.1| - 4.7e-13 49.0 5.8 2.3e-06 27.4 0.1 2.5 2 0 0 2 2 2 2 Cell division protein FtsA PilM_2 PF11104.3 gi|410671796|ref|YP_006924167.1| - 3.3e-11 42.6 0.8 4.4e-05 22.5 0.3 2.5 2 1 0 2 2 2 2 Type IV pilus assembly protein PilM; ThiS PF02597.15 gi|410671796|ref|YP_006924167.1| - 1.5e-06 28.5 3.3 0.78 10.2 0.0 6.1 4 2 1 6 6 6 2 ThiS family MreB_Mbl PF06723.8 gi|410671796|ref|YP_006924167.1| - 3.4e-06 25.8 8.1 0.00091 17.9 4.3 3.3 2 1 0 2 2 2 1 MreB/Mbl protein Ub-Mut7C PF14451.1 gi|410671796|ref|YP_006924167.1| - 8.7e-06 25.1 2.5 0.83 9.2 0.0 5.2 5 1 1 6 6 6 2 Mut7-C ubiquitin DDR PF08841.5 gi|410671796|ref|YP_006924167.1| - 0.00092 18.1 2.2 0.0012 17.7 0.1 2.2 3 0 0 3 3 3 1 Diol dehydratase reactivase ATPase-like domain Sipho_tail PF05709.6 gi|410671796|ref|YP_006924167.1| - 0.11 11.5 0.0 0.49 9.4 0.0 2.1 1 1 0 1 1 1 0 Phage tail protein SrfB PF07520.6 gi|410671796|ref|YP_006924167.1| - 0.17 9.2 0.2 0.27 8.6 0.1 1.2 1 0 0 1 1 1 0 Virulence factor SrfB CheC PF04509.7 gi|410671797|ref|YP_006924168.1| - 4.6e-08 32.6 0.1 3.7e-07 29.7 0.0 2.3 2 0 0 2 2 2 1 CheC-like family CheX PF13690.1 gi|410671797|ref|YP_006924168.1| - 0.064 13.1 0.1 0.15 11.8 0.0 1.7 1 1 1 2 2 2 0 Chemotaxis phosphatase CheX Radical_SAM PF04055.16 gi|410671797|ref|YP_006924168.1| - 0.088 12.9 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Radical SAM superfamily Borrelia_P13 PF05628.7 gi|410671797|ref|YP_006924168.1| - 0.093 12.5 0.2 0.21 11.3 0.1 1.5 1 1 0 1 1 1 0 Borrelia membrane protein P13 CheW PF01584.14 gi|410671798|ref|YP_006924169.1| - 1.6e-26 92.4 1.6 3.3e-26 91.3 1.1 1.6 1 0 0 1 1 1 1 CheW-like domain P2 PF07194.6 gi|410671798|ref|YP_006924169.1| - 5.3e-23 80.6 1.4 1.8e-22 78.9 0.9 2.0 1 0 0 1 1 1 1 P2 response regulator binding domain HATPase_c PF02518.21 gi|410671798|ref|YP_006924169.1| - 1.6e-20 72.8 0.1 6.3e-20 70.9 0.1 2.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.18 gi|410671798|ref|YP_006924169.1| - 1.7e-20 72.7 0.5 1.7e-20 72.7 0.3 2.2 2 0 0 2 2 2 1 Hpt domain H-kinase_dim PF02895.9 gi|410671798|ref|YP_006924169.1| - 4.1e-20 71.8 5.2 4.1e-20 71.8 3.6 2.5 2 1 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain Snf7 PF03357.16 gi|410671798|ref|YP_006924169.1| - 0.00088 18.7 1.6 0.00088 18.7 1.1 2.5 2 0 0 2 2 2 1 Snf7 HATPase_c_3 PF13589.1 gi|410671798|ref|YP_006924169.1| - 0.0077 15.8 0.0 0.019 14.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|410671798|ref|YP_006924169.1| - 0.088 12.5 1.0 0.35 10.6 0.0 2.4 3 0 0 3 3 3 0 Histidine kinase-like ATPase domain CheB_methylest PF01339.12 gi|410671799|ref|YP_006924170.1| - 1.2e-63 213.8 0.5 2.4e-63 212.8 0.3 1.5 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.19 gi|410671799|ref|YP_006924170.1| - 5.9e-23 81.0 0.1 1.5e-22 79.6 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.19 gi|410671800|ref|YP_006924171.1| - 3.1e-29 101.2 1.3 3.4e-29 101.0 0.9 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.14 gi|410671800|ref|YP_006924171.1| - 0.0092 15.8 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 1 B12 binding domain Gate PF07670.9 gi|410671801|ref|YP_006924172.1| - 0.0096 15.8 6.8 0.0096 15.8 4.7 2.4 2 1 0 2 2 2 1 Nucleoside recognition Trm112p PF03966.11 gi|410671803|ref|YP_006924174.1| - 3.6e-12 46.4 1.9 7.4e-12 45.4 1.3 1.5 1 1 0 1 1 1 1 Trm112p-like protein Cys_rich_KTR PF14205.1 gi|410671803|ref|YP_006924174.1| - 0.00019 20.8 2.3 0.00031 20.1 1.6 1.4 1 1 0 1 1 1 1 Cysteine-rich KTR Lar_restr_allev PF14354.1 gi|410671803|ref|YP_006924174.1| - 0.0028 17.9 0.2 0.0037 17.5 0.1 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar Elf1 PF05129.8 gi|410671803|ref|YP_006924174.1| - 0.0034 17.0 0.0 0.0035 16.9 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like CK_II_beta PF01214.13 gi|410671803|ref|YP_006924174.1| - 0.009 15.5 0.3 0.0096 15.4 0.2 1.0 1 0 0 1 1 1 1 Casein kinase II regulatory subunit TF_Zn_Ribbon PF08271.7 gi|410671803|ref|YP_006924174.1| - 0.01 15.1 0.9 2.1 7.7 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.7 gi|410671803|ref|YP_006924174.1| - 0.036 14.1 0.3 0.081 13.0 0.2 1.5 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-TFIIB PF13453.1 gi|410671803|ref|YP_006924174.1| - 0.044 12.9 0.4 6.7 5.9 0.0 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger DUF329 PF03884.9 gi|410671803|ref|YP_006924174.1| - 0.065 12.8 0.1 5.8 6.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) C1_4 PF07975.7 gi|410671803|ref|YP_006924174.1| - 0.074 13.0 0.2 0.15 12.0 0.2 1.5 1 1 0 1 1 1 0 TFIIH C1-like domain zf-C4_Topoisom PF01396.14 gi|410671803|ref|YP_006924174.1| - 0.082 12.4 2.0 2.9 7.4 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger A2L_zn_ribbon PF08792.5 gi|410671803|ref|YP_006924174.1| - 0.082 12.3 2.0 1.2 8.6 1.4 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-C3HC4_3 PF13920.1 gi|410671803|ref|YP_006924174.1| - 0.1 12.3 0.3 13 5.5 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DRP PF06044.7 gi|410671803|ref|YP_006924174.1| - 0.13 11.2 0.1 0.13 11.2 0.1 1.0 1 0 0 1 1 1 0 Dam-replacing family Auto_anti-p27 PF06677.7 gi|410671803|ref|YP_006924174.1| - 0.14 11.9 1.1 6.6 6.5 0.1 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-RING_3 PF14369.1 gi|410671803|ref|YP_006924174.1| - 0.2 11.6 2.5 3.5 7.7 0.1 2.1 1 1 1 2 2 2 0 zinc-finger DUF3797 PF12677.2 gi|410671803|ref|YP_006924174.1| - 0.29 10.7 3.5 5.1 6.8 2.5 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF3797) zf-RING_UBOX PF13445.1 gi|410671803|ref|YP_006924174.1| - 0.63 9.8 2.7 7.1 6.4 0.3 2.2 2 0 0 2 2 2 0 RING-type zinc-finger zf-RING_4 PF14570.1 gi|410671803|ref|YP_006924174.1| - 3.9 7.1 7.3 1.9 8.1 1.2 2.1 1 1 0 2 2 2 0 RING/Ubox like zinc-binding domain CTP_synth_N PF06418.9 gi|410671805|ref|YP_006924176.1| - 7.4e-128 425.4 0.4 1.3e-127 424.6 0.3 1.3 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|410671805|ref|YP_006924176.1| - 4e-51 173.2 0.0 7.7e-51 172.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CbiA PF01656.18 gi|410671805|ref|YP_006924176.1| - 1.8e-09 37.2 0.2 4.1e-09 36.1 0.1 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_C26 PF07722.8 gi|410671805|ref|YP_006924176.1| - 2.6e-07 30.3 0.0 2.1e-06 27.3 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 TruD PF01142.13 gi|410671806|ref|YP_006924177.1| - 6.3e-109 364.0 0.0 7.1e-109 363.9 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) Transglut_core PF01841.14 gi|410671807|ref|YP_006924178.1| - 0.00016 21.8 0.0 0.00029 21.0 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF553 PF04473.7 gi|410671807|ref|YP_006924178.1| - 0.026 13.8 0.0 0.037 13.3 0.0 1.3 1 0 0 1 1 1 0 Transglutaminase-like domain PTH2 PF01981.11 gi|410671808|ref|YP_006924179.1| - 2.5e-41 139.9 0.0 2.8e-41 139.8 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 RimK PF08443.6 gi|410671809|ref|YP_006924180.1| - 2.9e-33 114.9 0.0 5.7e-33 113.9 0.0 1.5 1 1 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|410671809|ref|YP_006924180.1| - 1.9e-16 59.7 0.0 5e-16 58.3 0.0 1.7 1 1 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|410671809|ref|YP_006924180.1| - 5.3e-10 39.3 0.0 9.9e-10 38.4 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|410671809|ref|YP_006924180.1| - 4.1e-07 29.0 0.0 5.8e-07 28.5 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_YheCD PF14398.1 gi|410671809|ref|YP_006924180.1| - 0.0001 21.2 0.0 0.0028 16.4 0.0 2.1 2 0 0 2 2 2 1 YheC/D like ATP-grasp ATP-grasp_3 PF02655.9 gi|410671809|ref|YP_006924180.1| - 0.00014 21.7 0.0 0.00052 19.9 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain CP_ATPgrasp_1 PF04174.8 gi|410671809|ref|YP_006924180.1| - 0.05 12.2 0.0 1.7 7.2 0.0 2.1 2 0 0 2 2 2 0 A circularly permuted ATPgrasp DUF434 PF04256.7 gi|410671810|ref|YP_006924181.1| - 1.2e-15 56.6 0.1 2.7e-15 55.4 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF434) DUF835 PF05763.7 gi|410671811|ref|YP_006924182.1| - 5.9e-35 119.7 0.6 1.6e-34 118.4 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF835) Response_reg PF00072.19 gi|410671811|ref|YP_006924182.1| - 8.8e-28 96.5 0.4 2.1e-27 95.3 0.3 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|410671811|ref|YP_006924182.1| - 2.5e-13 50.2 0.0 2.1e-05 24.8 0.0 3.0 2 1 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|410671811|ref|YP_006924182.1| - 1.4e-09 37.9 0.0 0.0022 17.9 0.0 3.0 2 1 0 2 2 2 2 PAS fold PAS PF00989.19 gi|410671811|ref|YP_006924182.1| - 2e-08 34.0 0.0 0.0018 18.0 0.0 2.8 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|410671811|ref|YP_006924182.1| - 9e-06 25.3 1.2 0.011 15.6 0.0 3.7 3 0 0 3 3 3 1 PAS domain PAS_10 PF13596.1 gi|410671811|ref|YP_006924182.1| - 0.0082 16.3 0.0 0.02 15.1 0.0 1.6 1 0 0 1 1 1 1 PAS domain KaiC PF06745.8 gi|410671812|ref|YP_006924183.1| - 8.6e-33 113.3 0.0 1.2e-32 112.9 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|410671812|ref|YP_006924183.1| - 2.5e-10 40.0 0.0 3.7e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|410671812|ref|YP_006924183.1| - 0.0015 16.8 0.0 0.0021 16.4 0.0 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_14 PF13173.1 gi|410671812|ref|YP_006924183.1| - 0.081 12.8 0.0 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AMP-binding PF00501.23 gi|410671813|ref|YP_006924184.1| - 1.7e-18 66.2 0.0 2.3e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme SIS_2 PF13580.1 gi|410671813|ref|YP_006924184.1| - 0.059 13.0 0.0 0.27 10.9 0.0 2.0 2 0 0 2 2 2 0 SIS domain Thioredox_DsbH PF03190.10 gi|410671814|ref|YP_006924185.1| - 8.1e-78 259.7 0.0 1.5e-77 258.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|410671814|ref|YP_006924185.1| - 4.7e-13 48.9 0.0 1.1e-12 47.7 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like Glyco_hydro_88 PF07470.8 gi|410671814|ref|YP_006924185.1| - 2.2e-05 23.6 0.4 0.0037 16.3 0.1 2.3 2 0 0 2 2 2 2 Glycosyl Hydrolase Family 88 Thioredoxin_2 PF13098.1 gi|410671814|ref|YP_006924185.1| - 0.00012 22.2 0.0 0.00026 21.1 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like domain Glyco_hydro_76 PF03663.9 gi|410671814|ref|YP_006924185.1| - 0.00012 21.5 0.0 0.089 12.1 0.0 2.5 2 0 0 2 2 2 2 Glycosyl hydrolase family 76 GlcNAc_2-epim PF07221.6 gi|410671814|ref|YP_006924185.1| - 0.00036 19.6 0.2 0.42 9.5 0.1 2.4 2 0 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Pectate_lyase_2 PF06917.7 gi|410671814|ref|YP_006924185.1| - 0.0049 15.1 0.1 1.1 7.3 0.0 2.4 2 0 0 2 2 2 2 Periplasmic pectate lyase C5-epim_C PF06662.8 gi|410671814|ref|YP_006924185.1| - 0.087 12.1 0.5 4.4 6.5 0.0 3.1 2 1 1 3 3 3 0 D-glucuronyl C5-epimerase C-terminus DUF1680 PF07944.7 gi|410671814|ref|YP_006924185.1| - 0.15 10.3 0.0 9.1 4.4 0.0 2.1 2 0 0 2 2 2 0 Putative glycosyl hydrolase of unknown function (DUF1680) DUF2414 PF10309.4 gi|410671815|ref|YP_006924186.1| - 0.12 12.0 0.1 0.23 11.1 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2414) Rubrerythrin PF02915.12 gi|410671816|ref|YP_006924187.1| - 0.029 14.7 0.2 0.047 14.0 0.1 1.4 1 1 0 1 1 1 0 Rubrerythrin DUF1827 PF08860.5 gi|410671816|ref|YP_006924187.1| - 0.054 13.6 0.3 0.15 12.2 0.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1827) UPF0193 PF05250.6 gi|410671816|ref|YP_006924187.1| - 0.062 12.8 0.2 0.062 12.8 0.1 1.8 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0193) Pkip-1 PF06878.6 gi|410671816|ref|YP_006924187.1| - 0.14 12.0 2.2 2.1 8.1 0.4 2.2 2 0 0 2 2 2 0 Pkip-1 protein QueC PF06508.8 gi|410671817|ref|YP_006924188.1| - 1e-56 191.5 0.0 1.1e-56 191.3 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|410671817|ref|YP_006924188.1| - 0.00024 20.6 0.7 0.028 13.8 0.5 2.5 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) ATP_bind_3 PF01171.15 gi|410671817|ref|YP_006924188.1| - 0.0021 17.5 0.0 0.0085 15.6 0.0 1.8 2 0 0 2 2 2 1 PP-loop family Fer2 PF00111.22 gi|410671817|ref|YP_006924188.1| - 0.0022 17.6 0.1 0.0047 16.6 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NAD_synthase PF02540.12 gi|410671817|ref|YP_006924188.1| - 0.011 14.6 0.1 0.017 14.0 0.0 1.2 1 0 0 1 1 1 0 NAD synthase Asn_synthase PF00733.16 gi|410671817|ref|YP_006924188.1| - 0.025 14.0 0.1 0.031 13.7 0.1 1.3 1 1 0 1 1 1 0 Asparagine synthase tRNA_Me_trans PF03054.11 gi|410671817|ref|YP_006924188.1| - 0.13 10.8 0.0 0.19 10.2 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase DUF366 PF04017.7 gi|410671818|ref|YP_006924189.1| - 1.7e-70 235.9 3.0 1.9e-70 235.8 2.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) Fer4_14 PF13394.1 gi|410671819|ref|YP_006924190.1| - 3.1e-13 49.7 0.0 5.6e-13 48.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|410671819|ref|YP_006924190.1| - 6.9e-11 42.6 0.1 9.5e-11 42.1 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|410671819|ref|YP_006924190.1| - 1.8e-07 31.3 0.1 3.1e-07 30.6 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain PyrI_C PF02748.10 gi|410671819|ref|YP_006924190.1| - 0.023 14.1 0.6 0.052 12.9 0.4 1.5 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain HECT_2 PF09814.4 gi|410671819|ref|YP_006924190.1| - 0.047 12.4 0.1 0.066 11.9 0.1 1.2 1 0 0 1 1 1 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding PTPS PF01242.14 gi|410671820|ref|YP_006924191.1| - 3.6e-30 104.1 0.1 4.1e-30 103.9 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Radical_SAM PF04055.16 gi|410671821|ref|YP_006924192.1| - 1e-19 71.3 0.1 1.5e-19 70.7 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|410671821|ref|YP_006924192.1| - 1.2e-05 25.2 0.0 3.5e-05 23.7 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|410671821|ref|YP_006924192.1| - 0.00019 21.5 0.0 0.00039 20.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain AIRS PF00586.19 gi|410671822|ref|YP_006924193.1| - 2.7e-20 72.4 0.8 5.1e-20 71.5 0.6 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|410671822|ref|YP_006924193.1| - 1.3e-13 51.2 0.0 1.9e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain DDE_3 PF13358.1 gi|410671825|ref|YP_006924196.1| - 7.8e-25 87.3 0.5 1.7e-24 86.2 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_29 PF13551.1 gi|410671825|ref|YP_006924196.1| - 1.8e-16 60.2 0.0 5.6e-16 58.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410671825|ref|YP_006924196.1| - 2.1e-10 41.2 0.7 8.6e-10 39.2 0.0 2.4 3 0 0 3 3 3 1 Homeodomain-like domain rve PF00665.21 gi|410671825|ref|YP_006924196.1| - 5.6e-09 36.1 0.0 1.3e-08 34.9 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_33 PF13592.1 gi|410671825|ref|YP_006924196.1| - 1.5e-08 34.0 0.1 4.3e-08 32.5 0.1 1.9 1 0 0 1 1 1 1 Winged helix-turn helix DDE_1 PF03184.14 gi|410671825|ref|YP_006924196.1| - 1.6e-07 30.6 0.2 1.6e-07 30.6 0.1 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_23 PF13384.1 gi|410671825|ref|YP_006924196.1| - 3.3e-06 26.5 0.1 1e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|410671825|ref|YP_006924196.1| - 2.7e-05 24.0 0.0 6.4e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_21 PF13276.1 gi|410671825|ref|YP_006924196.1| - 0.09 12.7 0.1 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 HTH-like domain Radical_SAM PF04055.16 gi|410671828|ref|YP_006924199.1| - 8.4e-11 42.3 0.0 1.4e-10 41.5 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|410671828|ref|YP_006924199.1| - 1.8e-07 31.2 0.0 2.8e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|410671828|ref|YP_006924199.1| - 1.9e-06 28.0 0.0 3.3e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain META PF03724.11 gi|410671829|ref|YP_006924200.1| - 5.6e-15 55.0 0.0 7.6e-15 54.5 0.0 1.2 1 0 0 1 1 1 1 META domain DUF98 PF01947.11 gi|410671832|ref|YP_006924203.1| - 1.6e-18 66.8 0.0 2e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF98) UTRA PF07702.8 gi|410671832|ref|YP_006924203.1| - 0.066 12.8 0.0 0.086 12.4 0.0 1.2 1 0 0 1 1 1 0 UTRA domain Chor_lyase PF04345.8 gi|410671832|ref|YP_006924203.1| - 0.13 11.6 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Chorismate lyase Pentapeptide_4 PF13599.1 gi|410671833|ref|YP_006924204.1| - 8.8e-30 102.3 41.1 2.6e-13 49.5 6.4 2.9 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) Pentapeptide PF00805.17 gi|410671833|ref|YP_006924204.1| - 1.4e-17 62.4 20.6 6.1e-09 34.9 2.7 3.7 2 2 3 5 5 5 4 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.1 gi|410671833|ref|YP_006924204.1| - 7e-15 54.6 24.6 4.9e-08 32.7 4.8 4.0 2 2 0 2 2 2 2 Pentapeptide repeats (9 copies) TLD PF07534.11 gi|410671833|ref|YP_006924204.1| - 0.11 12.4 5.0 0.35 10.8 0.2 2.6 1 1 2 3 3 3 0 TLD Pectate_lyase_3 PF12708.2 gi|410671833|ref|YP_006924204.1| - 0.72 9.9 3.6 2.4 8.2 2.5 1.8 1 1 0 1 1 1 0 Pectate lyase superfamily protein CfAFP PF05264.6 gi|410671833|ref|YP_006924204.1| - 0.83 9.4 4.9 14 5.4 0.9 2.1 1 1 1 2 2 2 0 Choristoneura fumiferana antifreeze protein (CfAFP) Novirhabdo_Nv PF05554.6 gi|410671833|ref|YP_006924204.1| - 1.1 8.8 4.2 4.2 6.9 0.2 2.3 2 1 0 2 2 2 0 Viral hemorrhagic septicemia virus non-virion protein Beta_helix PF13229.1 gi|410671833|ref|YP_006924204.1| - 2.9 7.6 8.5 8.8 6.0 5.9 1.8 1 1 0 1 1 1 0 Right handed beta helix region DUF1189 PF06691.6 gi|410671834|ref|YP_006924205.1| - 4.9e-13 48.9 14.9 8.4e-13 48.2 10.3 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1189) Yip1 PF04893.12 gi|410671834|ref|YP_006924205.1| - 1.2e-06 28.1 9.0 2.2e-06 27.2 5.3 1.9 2 0 0 2 2 2 1 Yip1 domain HTH_42 PF06224.7 gi|410671835|ref|YP_006924206.1| - 9.2e-61 205.9 0.0 1.1e-60 205.7 0.0 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain DJ-1_PfpI PF01965.19 gi|410671837|ref|YP_006924208.1| - 5.5e-18 64.8 0.0 7.8e-18 64.3 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|410671837|ref|YP_006924208.1| - 1e-16 60.6 0.0 1.4e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase GATase_3 PF07685.9 gi|410671837|ref|YP_006924208.1| - 0.035 13.7 0.0 0.045 13.3 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain HATPase_c PF02518.21 gi|410671838|ref|YP_006924209.1| - 9e-30 102.6 0.1 3.4e-29 100.8 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|410671838|ref|YP_006924209.1| - 4.4e-29 100.9 0.1 1.6e-11 44.4 0.0 4.3 4 0 0 4 4 4 4 PAS domain PAS_4 PF08448.5 gi|410671838|ref|YP_006924209.1| - 2.2e-23 82.3 0.0 2.6e-08 33.8 0.0 4.1 4 0 0 4 4 4 3 PAS fold HisKA PF00512.20 gi|410671838|ref|YP_006924209.1| - 4.7e-22 77.7 0.0 1.2e-21 76.4 0.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|410671838|ref|YP_006924209.1| - 1.8e-20 72.8 0.5 0.00012 22.1 0.0 4.5 4 0 0 4 4 4 4 PAS fold PAS PF00989.19 gi|410671838|ref|YP_006924209.1| - 3.7e-19 68.5 0.1 8.3e-12 44.8 0.0 4.1 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.1 gi|410671838|ref|YP_006924209.1| - 2.8e-14 52.3 0.0 1.3e-07 31.2 0.0 3.0 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.2 gi|410671838|ref|YP_006924209.1| - 3.4e-07 30.2 0.8 0.00025 21.0 0.0 4.3 4 1 0 4 4 4 1 PAS fold HATPase_c_5 PF14501.1 gi|410671838|ref|YP_006924209.1| - 0.023 14.3 0.0 0.075 12.7 0.0 2.0 1 0 0 1 1 1 0 GHKL domain HATPase_c_3 PF13589.1 gi|410671838|ref|YP_006924209.1| - 0.08 12.5 0.0 0.23 11.1 0.0 1.9 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF389 PF04087.9 gi|410671839|ref|YP_006924210.1| - 1.3e-32 112.6 19.6 1.3e-32 112.6 13.6 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF389) Plant_vir_prot PF01307.12 gi|410671839|ref|YP_006924210.1| - 2.2 8.0 4.8 2.7 7.7 0.0 3.2 3 0 0 3 3 3 0 Plant viral movement protein Acetyltransf_1 PF00583.19 gi|410671840|ref|YP_006924211.1| - 1.3e-15 57.1 0.0 1.9e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|410671840|ref|YP_006924211.1| - 5.3e-08 32.9 0.4 8.6e-08 32.2 0.1 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|410671840|ref|YP_006924211.1| - 7.1e-08 32.4 0.0 9.7e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|410671840|ref|YP_006924211.1| - 2e-07 31.1 0.0 3e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|410671840|ref|YP_006924211.1| - 2.1e-07 30.6 0.0 3.9e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|410671840|ref|YP_006924211.1| - 4.8e-05 23.3 0.2 6.6e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|410671840|ref|YP_006924211.1| - 0.0023 17.8 0.0 0.0033 17.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|410671840|ref|YP_006924211.1| - 0.0078 16.3 0.0 0.01 16.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|410671840|ref|YP_006924211.1| - 0.046 13.3 0.0 0.09 12.3 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|410671840|ref|YP_006924211.1| - 0.073 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Na_H_Exchanger PF00999.16 gi|410671843|ref|YP_006924214.1| - 1e-50 172.3 45.4 1.3e-50 171.9 31.4 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Usp PF00582.21 gi|410671843|ref|YP_006924214.1| - 2.2e-10 40.8 0.2 3.6e-10 40.1 0.1 1.3 1 0 0 1 1 1 1 Universal stress protein family DUF2238 PF09997.4 gi|410671844|ref|YP_006924215.1| - 0.00036 19.9 0.6 0.00036 19.9 0.4 3.6 2 2 1 3 3 3 2 Predicted membrane protein (DUF2238) Multi_Drug_Res PF00893.14 gi|410671845|ref|YP_006924216.1| - 1.4e-27 95.9 7.2 1.9e-27 95.5 5.0 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein UAA PF08449.6 gi|410671845|ref|YP_006924216.1| - 0.075 11.9 4.4 0.078 11.8 3.0 1.0 1 0 0 1 1 1 0 UAA transporter family EmrE PF13536.1 gi|410671845|ref|YP_006924216.1| - 0.2 11.8 12.0 0.028 14.6 4.5 1.8 1 1 1 2 2 2 0 Multidrug resistance efflux transporter EamA PF00892.15 gi|410671845|ref|YP_006924216.1| - 0.59 10.1 9.7 0.8 9.7 4.7 2.2 1 1 1 2 2 2 0 EamA-like transporter family CD20 PF04103.10 gi|410671845|ref|YP_006924216.1| - 1.2 9.0 8.5 1.6 8.6 5.9 1.2 1 0 0 1 1 1 0 CD20-like family HTH_24 PF13412.1 gi|410671846|ref|YP_006924217.1| - 0.0059 15.9 0.0 0.011 15.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding EHN PF06441.7 gi|410671846|ref|YP_006924217.1| - 0.016 15.0 0.2 0.024 14.5 0.1 1.3 1 0 0 1 1 1 0 Epoxide hydrolase N terminus YqeY PF09424.5 gi|410671846|ref|YP_006924217.1| - 0.039 13.8 0.3 0.099 12.4 0.2 1.7 2 0 0 2 2 2 0 Yqey-like protein Acetyltransf_7 PF13508.1 gi|410671849|ref|YP_006924220.1| - 8.4e-10 38.6 0.0 1.9e-09 37.5 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|410671849|ref|YP_006924220.1| - 5.1e-09 36.0 0.0 1.4e-08 34.6 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|410671849|ref|YP_006924220.1| - 1.1e-07 32.0 0.0 7.5e-07 29.2 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|410671849|ref|YP_006924220.1| - 0.046 13.5 0.0 0.081 12.7 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|410671849|ref|YP_006924220.1| - 0.08 12.8 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DJ-1_PfpI PF01965.19 gi|410671850|ref|YP_006924221.1| - 3.1e-40 137.0 0.0 3.8e-40 136.7 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|410671850|ref|YP_006924221.1| - 1.9e-16 59.7 0.0 2.5e-16 59.4 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|410671850|ref|YP_006924221.1| - 1.3e-05 24.7 0.0 1.5e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|410671850|ref|YP_006924221.1| - 0.0071 15.8 0.0 0.0098 15.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.9 gi|410671850|ref|YP_006924221.1| - 0.032 13.8 0.0 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.1 gi|410671850|ref|YP_006924221.1| - 0.033 13.1 0.0 0.038 12.8 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF1059 PF06348.6 gi|410671851|ref|YP_006924222.1| - 0.00014 21.6 1.0 0.00016 21.4 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) DUF327 PF03885.8 gi|410671851|ref|YP_006924222.1| - 0.013 15.3 0.0 0.015 15.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF327) Zn_protease PF05618.6 gi|410671852|ref|YP_006924223.1| - 3.2e-09 36.5 0.1 1.3e-08 34.5 0.1 1.8 1 1 0 1 1 1 1 Putative ATP-dependant zinc protease Pep_deformylase PF01327.16 gi|410671852|ref|YP_006924223.1| - 0.0084 15.5 1.0 0.049 13.0 0.7 1.9 1 1 0 1 1 1 1 Polypeptide deformylase TPR_1 PF00515.23 gi|410671854|ref|YP_006924225.1| - 1.7e-10 40.0 0.1 6.5e-09 35.0 0.0 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|410671854|ref|YP_006924225.1| - 6.6e-10 38.1 0.1 8.4e-09 34.6 0.0 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|410671854|ref|YP_006924225.1| - 8.8e-10 38.0 0.0 1.4e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 TPR repeat TPR_8 PF13181.1 gi|410671854|ref|YP_006924225.1| - 2.3e-08 33.2 0.1 2.1e-06 27.0 0.0 2.9 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_17 PF13431.1 gi|410671854|ref|YP_006924225.1| - 4.8e-07 29.4 0.5 1.8e-06 27.7 0.1 2.2 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|410671854|ref|YP_006924225.1| - 1.7e-05 25.0 0.0 6.3e-05 23.2 0.0 2.0 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|410671854|ref|YP_006924225.1| - 6.8e-05 23.1 0.1 0.035 14.7 0.0 3.0 2 1 1 3 3 3 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|410671854|ref|YP_006924225.1| - 0.0015 17.3 0.0 0.0022 16.8 0.0 1.2 1 0 0 1 1 1 1 NMDA receptor-regulated protein 1 TPR_16 PF13432.1 gi|410671854|ref|YP_006924225.1| - 0.0017 18.9 0.0 0.004 17.8 0.0 1.6 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|410671854|ref|YP_006924225.1| - 0.016 15.6 0.0 0.042 14.3 0.0 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_12 PF13424.1 gi|410671854|ref|YP_006924225.1| - 0.016 15.1 0.0 0.029 14.3 0.0 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_7 PF13176.1 gi|410671854|ref|YP_006924225.1| - 0.031 14.0 0.0 0.46 10.4 0.0 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_9 PF13371.1 gi|410671854|ref|YP_006924225.1| - 0.044 13.6 0.0 0.091 12.6 0.0 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|410671854|ref|YP_006924225.1| - 0.14 12.0 0.0 0.42 10.5 0.0 1.8 2 0 0 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat CitMHS PF03600.11 gi|410671855|ref|YP_006924226.1| - 1.7e-30 105.7 40.5 8.5e-29 100.2 20.0 2.1 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.14 gi|410671855|ref|YP_006924226.1| - 0.0046 15.8 37.7 1.5 7.5 26.1 2.6 1 1 0 1 1 1 1 Sodium:sulfate symporter transmembrane region DUF3397 PF11877.3 gi|410671855|ref|YP_006924226.1| - 0.022 14.7 1.4 0.022 14.7 1.0 4.8 2 2 3 5 5 5 0 Protein of unknown function (DUF3397) DUF3979 PF13141.1 gi|410671856|ref|YP_006924227.1| - 0.11 12.3 0.1 0.12 12.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3979) FAA_hydrolase PF01557.13 gi|410671857|ref|YP_006924228.1| - 6.4e-69 231.7 0.0 7.8e-69 231.4 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family TrmB PF01978.14 gi|410671858|ref|YP_006924229.1| - 0.00019 21.0 0.1 0.0003 20.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|410671858|ref|YP_006924229.1| - 0.00033 19.9 0.1 0.00057 19.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|410671858|ref|YP_006924229.1| - 0.0021 18.1 0.0 0.0025 17.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.15 gi|410671858|ref|YP_006924229.1| - 0.0086 15.7 0.1 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family RNA_pol_Rpc34 PF05158.7 gi|410671858|ref|YP_006924229.1| - 0.019 14.2 0.0 0.024 13.8 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_12 PF08461.5 gi|410671858|ref|YP_006924229.1| - 0.034 13.8 0.1 0.063 13.0 0.1 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_IclR PF09339.5 gi|410671858|ref|YP_006924229.1| - 0.052 13.1 0.2 0.085 12.4 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MerR PF00376.18 gi|410671858|ref|YP_006924229.1| - 0.056 13.0 0.1 2.3 7.8 0.0 2.4 2 0 0 2 2 2 0 MerR family regulatory protein FaeA PF04703.7 gi|410671858|ref|YP_006924229.1| - 0.092 12.9 0.0 0.28 11.3 0.0 1.8 1 1 1 2 2 2 0 FaeA-like protein HTH_20 PF12840.2 gi|410671858|ref|YP_006924229.1| - 0.1 12.4 0.1 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_15 PF12324.3 gi|410671858|ref|YP_006924229.1| - 0.13 11.9 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase tRNA-synt_1c PF00749.16 gi|410671859|ref|YP_006924230.1| - 8.9e-60 201.9 0.0 1.1e-59 201.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|410671859|ref|YP_006924230.1| - 4.2e-30 104.6 0.0 6.6e-30 104.0 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF523 PF04463.7 gi|410671860|ref|YP_006924231.1| - 1.1e-32 112.7 0.0 1.7e-32 112.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF1722 PF08349.6 gi|410671860|ref|YP_006924231.1| - 2.2e-29 101.6 0.0 3.7e-29 100.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) Zn_Tnp_IS1595 PF12760.2 gi|410671861|ref|YP_006924232.1| - 1e-05 25.2 0.3 1.5e-05 24.6 0.2 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain RecR PF02132.10 gi|410671861|ref|YP_006924232.1| - 0.0021 17.4 0.2 0.54 9.7 0.0 2.3 2 0 0 2 2 2 1 RecR protein OrfB_Zn_ribbon PF07282.6 gi|410671861|ref|YP_006924232.1| - 0.0037 16.8 0.0 0.0054 16.3 0.0 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.7 gi|410671861|ref|YP_006924232.1| - 0.0054 16.7 0.7 0.0098 15.9 0.5 1.4 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase zf-ISL3 PF14690.1 gi|410671861|ref|YP_006924232.1| - 0.0054 16.7 0.2 1.6 8.8 0.0 2.2 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|410671861|ref|YP_006924232.1| - 0.0068 16.3 0.3 2 8.4 0.0 2.3 2 0 0 2 2 2 1 Zinc ribbon domain RRN7 PF11781.3 gi|410671861|ref|YP_006924232.1| - 0.018 14.4 4.7 0.087 12.3 3.3 2.0 1 1 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-ribbon_3 PF13248.1 gi|410671861|ref|YP_006924232.1| - 0.041 13.0 0.8 3.4 6.9 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|410671861|ref|YP_006924232.1| - 0.044 14.0 0.5 0.073 13.3 0.3 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar RNA_POL_M_15KD PF02150.11 gi|410671861|ref|YP_006924232.1| - 0.051 13.2 0.5 0.12 12.0 0.2 1.7 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Rubredoxin PF00301.15 gi|410671861|ref|YP_006924232.1| - 0.053 13.4 1.2 5.3 6.9 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin Nudix_N_2 PF14803.1 gi|410671861|ref|YP_006924232.1| - 0.055 13.1 5.0 4.6 7.0 0.0 2.9 2 1 0 2 2 2 0 Nudix N-terminal DUF164 PF02591.10 gi|410671861|ref|YP_006924232.1| - 0.068 13.0 0.3 9.5 6.1 0.0 2.3 2 0 0 2 2 2 0 Putative zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|410671861|ref|YP_006924232.1| - 0.14 11.7 6.1 0.59 9.6 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF2757 PF10955.3 gi|410671861|ref|YP_006924232.1| - 0.17 12.1 0.1 0.17 12.1 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2757) A2L_zn_ribbon PF08792.5 gi|410671861|ref|YP_006924232.1| - 0.2 11.1 2.1 0.53 9.8 1.4 1.7 1 1 0 1 1 1 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|410671861|ref|YP_006924232.1| - 0.36 10.1 4.7 0.97 8.8 2.3 2.4 1 1 0 1 1 1 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|410671861|ref|YP_006924232.1| - 1.5 8.5 6.7 8.3 6.2 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Desulfoferrod_N PF06397.7 gi|410671861|ref|YP_006924232.1| - 1.6 8.1 7.5 4.1 6.8 1.6 2.3 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Ribosomal_S3Ae PF01015.13 gi|410671862|ref|YP_006924233.1| - 1.2e-70 236.7 5.8 1.4e-70 236.6 4.0 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family NosD PF05048.8 gi|410671863|ref|YP_006924234.1| - 4.3e-58 196.2 149.0 2e-23 82.7 34.8 6.3 1 1 5 6 6 6 6 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|410671863|ref|YP_006924234.1| - 5e-45 153.0 162.6 4.4e-15 55.7 27.9 6.5 1 1 4 6 6 6 6 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|410671863|ref|YP_006924234.1| - 1.4e-05 25.3 21.6 1.4e-05 25.3 15.0 7.0 1 1 4 5 5 5 4 Pectate lyase superfamily protein FlpD PF02662.11 gi|410671863|ref|YP_006924234.1| - 0.15 11.7 0.0 0.51 10.0 0.0 1.9 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit TrmB PF01978.14 gi|410671864|ref|YP_006924235.1| - 0.00012 21.6 0.0 0.00039 20.0 0.0 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|410671864|ref|YP_006924235.1| - 0.012 15.1 0.2 0.019 14.4 0.1 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit Rrf2 PF02082.15 gi|410671864|ref|YP_006924235.1| - 0.015 15.4 0.0 0.039 14.0 0.0 1.7 1 1 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.1 gi|410671864|ref|YP_006924235.1| - 0.018 15.3 0.1 0.049 13.9 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_37 PF13744.1 gi|410671864|ref|YP_006924235.1| - 0.022 14.5 0.0 0.039 13.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|410671864|ref|YP_006924235.1| - 0.036 14.0 0.1 0.17 11.9 0.0 2.0 1 1 1 2 2 2 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|410671864|ref|YP_006924235.1| - 0.12 12.0 0.0 0.33 10.6 0.0 1.7 1 1 1 2 2 2 0 Bacterial regulatory protein, arsR family Nuc_deoxyrib_tr PF05014.10 gi|410671865|ref|YP_006924236.1| - 9e-25 86.7 0.0 1.1e-24 86.4 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase DUF4406 PF14359.1 gi|410671865|ref|YP_006924236.1| - 0.00041 20.3 0.0 0.00058 19.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4406) TPR_11 PF13414.1 gi|410671866|ref|YP_006924237.1| - 9.1e-81 265.5 36.3 2.5e-18 65.5 0.8 6.2 2 1 5 8 8 7 7 TPR repeat TPR_1 PF00515.23 gi|410671866|ref|YP_006924237.1| - 3.6e-78 254.2 39.5 5.9e-12 44.6 0.7 9.5 10 0 0 10 10 10 9 Tetratricopeptide repeat TPR_2 PF07719.12 gi|410671866|ref|YP_006924237.1| - 8.8e-66 212.6 32.2 1.5e-09 37.0 0.3 9.6 10 0 0 10 10 10 9 Tetratricopeptide repeat TPR_17 PF13431.1 gi|410671866|ref|YP_006924237.1| - 3.6e-56 182.7 18.4 2e-07 30.6 0.1 9.5 9 1 0 9 9 9 8 Tetratricopeptide repeat TPR_16 PF13432.1 gi|410671866|ref|YP_006924237.1| - 3.2e-52 174.1 1.8 6.1e-11 42.6 0.0 7.2 1 1 6 8 8 8 8 Tetratricopeptide repeat TPR_12 PF13424.1 gi|410671866|ref|YP_006924237.1| - 7.3e-44 147.5 9.3 5.8e-10 38.9 0.3 5.4 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|410671866|ref|YP_006924237.1| - 2.7e-43 142.5 41.2 9.9e-06 24.9 0.1 9.9 9 1 1 10 10 10 9 Tetratricopeptide repeat TPR_14 PF13428.1 gi|410671866|ref|YP_006924237.1| - 1.3e-38 127.8 0.0 2.2e-05 24.6 0.0 8.9 2 2 7 9 9 9 7 Tetratricopeptide repeat TPR_19 PF14559.1 gi|410671866|ref|YP_006924237.1| - 5e-31 106.8 3.3 2.2e-09 37.5 0.0 6.2 3 2 1 6 6 5 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|410671866|ref|YP_006924237.1| - 1.2e-25 89.1 0.2 1.8e-08 34.1 0.1 5.1 2 1 5 7 7 7 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|410671866|ref|YP_006924237.1| - 1.5e-23 81.5 7.1 0.017 15.5 0.1 9.3 10 0 0 10 10 10 5 Tetratricopeptide repeat Apc3 PF12895.2 gi|410671866|ref|YP_006924237.1| - 3.9e-22 78.1 15.6 4.7e-07 29.8 0.3 4.9 3 1 2 5 5 5 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|410671866|ref|YP_006924237.1| - 3e-19 67.2 20.8 0.084 12.7 0.1 9.1 9 0 0 9 9 9 6 Tetratricopeptide repeat DUF3856 PF12968.2 gi|410671866|ref|YP_006924237.1| - 2e-11 43.9 0.2 1.3 8.8 0.0 6.5 1 1 5 6 6 6 3 Domain of Unknown Function (DUF3856) NARP1 PF12569.3 gi|410671866|ref|YP_006924237.1| - 1.3e-10 40.7 1.1 0.15 10.7 0.0 5.2 1 1 3 5 5 5 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|410671866|ref|YP_006924237.1| - 3.1e-10 39.7 14.4 0.019 14.8 0.1 7.0 8 0 0 8 8 6 2 Fis1 C-terminal tetratricopeptide repeat MIT PF04212.13 gi|410671866|ref|YP_006924237.1| - 1.3e-07 31.3 25.9 0.12 12.2 0.1 8.0 6 3 1 8 8 8 3 MIT (microtubule interacting and transport) domain TPR_3 PF07720.7 gi|410671866|ref|YP_006924237.1| - 2.8e-07 30.1 9.2 0.13 12.1 0.0 6.6 6 1 1 7 7 7 2 Tetratricopeptide repeat FAT PF02259.18 gi|410671866|ref|YP_006924237.1| - 6.2e-06 25.4 4.3 1.2 8.0 0.0 5.7 2 2 3 6 6 6 1 FAT domain TPR_15 PF13429.1 gi|410671866|ref|YP_006924237.1| - 7.7e-06 25.1 0.1 0.022 13.8 0.0 2.6 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|410671866|ref|YP_006924237.1| - 1.2e-05 25.0 3.9 10 6.2 0.1 7.3 8 0 0 8 8 8 0 Tetratricopeptide repeat BTAD PF03704.12 gi|410671866|ref|YP_006924237.1| - 1.5e-05 25.3 0.1 0.057 13.7 0.0 3.9 2 1 0 3 3 3 1 Bacterial transcriptional activator domain Ribosomal_S16 PF00886.14 gi|410671866|ref|YP_006924237.1| - 0.00017 21.2 2.5 9.4 6.0 0.0 5.0 3 1 1 4 4 4 0 Ribosomal protein S16 PPR PF01535.15 gi|410671866|ref|YP_006924237.1| - 0.00038 20.2 6.3 28 4.9 0.0 7.2 8 0 0 8 8 7 0 PPR repeat TOM20_plant PF06552.7 gi|410671866|ref|YP_006924237.1| - 0.0032 17.0 4.3 1.1 8.7 0.0 4.9 4 1 1 5 5 5 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_4 PF07721.9 gi|410671866|ref|YP_006924237.1| - 0.0035 17.6 0.3 53 4.6 0.1 4.2 4 0 0 4 4 3 0 Tetratricopeptide repeat Apc5 PF12862.2 gi|410671866|ref|YP_006924237.1| - 0.0057 16.4 0.1 3.9 7.3 0.0 4.0 3 1 0 3 3 3 1 Anaphase-promoting complex subunit 5 PPTA PF01239.17 gi|410671866|ref|YP_006924237.1| - 0.006 15.8 10.7 4.7 6.7 0.1 6.6 7 0 0 7 7 7 0 Protein prenyltransferase alpha subunit repeat TruB_N PF01509.13 gi|410671866|ref|YP_006924237.1| - 0.0061 16.7 0.0 2.7 8.1 0.0 3.2 2 1 2 4 4 4 1 TruB family pseudouridylate synthase (N terminal domain) TPR_21 PF09976.4 gi|410671866|ref|YP_006924237.1| - 0.078 12.9 7.8 0.11 12.3 0.5 3.9 4 1 1 5 5 5 0 Tetratricopeptide repeat PTH2 PF01981.11 gi|410671866|ref|YP_006924237.1| - 0.095 12.4 0.1 1.5e+02 2.1 0.0 4.3 4 1 1 5 5 5 0 Peptidyl-tRNA hydrolase PTH2 Molydop_binding PF01568.16 gi|410671866|ref|YP_006924237.1| - 0.099 12.4 0.1 28 4.5 0.0 3.7 5 0 0 5 5 4 0 Molydopterin dinucleotide binding domain Prefoldin PF02996.12 gi|410671866|ref|YP_006924237.1| - 0.17 11.5 0.6 6.7 6.3 0.1 3.2 2 1 1 3 3 3 0 Prefoldin subunit RPN7 PF10602.4 gi|410671866|ref|YP_006924237.1| - 0.43 9.9 11.4 9.3 5.5 0.1 5.6 4 3 2 6 6 6 0 26S proteasome subunit RPN7 DUF1033 PF06279.6 gi|410671866|ref|YP_006924237.1| - 3.7 7.3 10.0 30 4.4 0.1 4.4 2 1 4 6 6 6 0 Protein of unknown function (DUF1033) RVT_N PF13655.1 gi|410671867|ref|YP_006924238.1| - 0.0012 18.9 0.5 0.0019 18.2 0.3 1.3 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase DDE_Tnp_1 PF01609.16 gi|410671868|ref|YP_006924239.1| - 1.1e-08 34.8 1.6 1.9e-08 34.1 1.1 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|410671868|ref|YP_006924239.1| - 0.076 12.9 0.1 0.17 11.8 0.1 1.5 1 0 0 1 1 1 0 Transposase domain (DUF772) RVT_1 PF00078.22 gi|410671869|ref|YP_006924240.1| - 5.6e-44 150.0 0.1 1.4e-43 148.7 0.0 1.7 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) RVT_N PF13655.1 gi|410671869|ref|YP_006924240.1| - 1.6e-30 104.9 3.3 1.6e-30 104.9 2.3 2.4 3 0 0 3 3 3 1 N-terminal domain of reverse transcriptase GIIM PF08388.6 gi|410671869|ref|YP_006924240.1| - 6.7e-28 96.3 6.8 2.5e-27 94.4 4.7 2.1 1 0 0 1 1 1 1 Group II intron, maturase-specific domain HNH_3 PF13392.1 gi|410671869|ref|YP_006924240.1| - 0.0017 17.7 2.8 0.0019 17.5 0.4 2.2 2 0 0 2 2 2 1 HNH endonuclease HNH PF01844.18 gi|410671869|ref|YP_006924240.1| - 0.11 12.3 6.6 0.26 11.1 4.5 1.7 1 0 0 1 1 1 0 HNH endonuclease HK PF02110.10 gi|410671873|ref|YP_006924244.1| - 4.8e-70 235.5 5.5 5.4e-70 235.3 3.8 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|410671873|ref|YP_006924244.1| - 9.1e-12 44.6 0.8 1.2e-11 44.3 0.5 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|410671873|ref|YP_006924244.1| - 5.7e-06 25.7 0.5 7.2e-06 25.4 0.4 1.1 1 0 0 1 1 1 1 Carbohydrate kinase PfkB PF00294.19 gi|410671873|ref|YP_006924244.1| - 0.0037 16.4 0.8 0.0046 16.1 0.5 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase TMP-TENI PF02581.12 gi|410671874|ref|YP_006924245.1| - 3.5e-62 208.7 0.6 4.1e-62 208.4 0.4 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI NMO PF03060.10 gi|410671874|ref|YP_006924245.1| - 0.0014 17.8 1.4 0.015 14.4 0.9 1.9 1 1 0 1 1 1 1 Nitronate monooxygenase Ribul_P_3_epim PF00834.14 gi|410671874|ref|YP_006924245.1| - 0.012 14.7 0.2 0.022 13.8 0.1 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Peptidase_M48 PF01435.13 gi|410671875|ref|YP_006924246.1| - 8.6e-10 38.5 1.3 2.9e-09 36.8 0.0 2.3 1 1 2 3 3 3 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|410671875|ref|YP_006924246.1| - 0.0024 16.9 0.4 0.0036 16.3 0.3 1.3 1 1 0 1 1 1 1 BlaR1 peptidase M56 DUF4157 PF13699.1 gi|410671875|ref|YP_006924246.1| - 0.0025 17.9 0.0 0.0046 17.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) DUF2201_N PF13203.1 gi|410671875|ref|YP_006924246.1| - 0.0046 16.1 0.0 0.0062 15.7 0.0 1.1 1 0 0 1 1 1 1 Putative metallopeptidase domain Ni_hydr_CYTB PF01292.15 gi|410671875|ref|YP_006924246.1| - 0.0064 15.8 0.7 0.012 15.0 0.5 1.4 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 DUF2268 PF10026.4 gi|410671875|ref|YP_006924246.1| - 0.022 14.1 0.1 0.038 13.3 0.1 1.4 1 1 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) SprT-like PF10263.4 gi|410671875|ref|YP_006924246.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF805 PF05656.9 gi|410671875|ref|YP_006924246.1| - 4.5 7.1 6.4 2.5 7.9 3.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF805) Penicillinase_R PF03965.11 gi|410671876|ref|YP_006924247.1| - 1.4e-09 38.0 0.0 1.6e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.14 gi|410671876|ref|YP_006924247.1| - 4.1e-08 32.8 0.0 9.8e-08 31.5 0.0 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|410671876|ref|YP_006924247.1| - 2.4e-07 30.3 0.0 3.5e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|410671876|ref|YP_006924247.1| - 2.5e-07 30.2 0.0 4.8e-07 29.3 0.0 1.5 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|410671876|ref|YP_006924247.1| - 4.9e-07 29.9 0.0 1.1e-06 28.7 0.0 1.6 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|410671876|ref|YP_006924247.1| - 2.6e-06 26.7 0.0 5.4e-06 25.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|410671876|ref|YP_006924247.1| - 0.00012 21.6 0.0 0.00018 21.0 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|410671876|ref|YP_006924247.1| - 0.00025 20.7 0.0 0.00062 19.5 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|410671876|ref|YP_006924247.1| - 0.00028 20.8 0.0 0.00044 20.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_9 PF08221.6 gi|410671876|ref|YP_006924247.1| - 0.00032 20.5 0.0 0.0013 18.6 0.0 1.9 2 1 1 3 3 3 1 RNA polymerase III subunit RPC82 helix-turn-helix domain TFIIE_alpha PF02002.12 gi|410671876|ref|YP_006924247.1| - 0.00084 18.8 0.0 0.0014 18.0 0.0 1.3 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_5 PF01022.15 gi|410671876|ref|YP_006924247.1| - 0.01 15.4 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF4423 PF14394.1 gi|410671876|ref|YP_006924247.1| - 0.016 14.7 0.0 0.018 14.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Sulfolobus_pRN PF05584.6 gi|410671876|ref|YP_006924247.1| - 0.02 14.8 0.0 0.029 14.3 0.0 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein Fe_dep_repress PF01325.14 gi|410671876|ref|YP_006924247.1| - 0.025 14.5 0.0 0.06 13.2 0.0 1.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|410671876|ref|YP_006924247.1| - 0.03 14.4 0.0 0.062 13.4 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulator FtsX PF02687.16 gi|410671877|ref|YP_006924248.1| - 2.8e-20 72.2 11.1 2.8e-20 72.2 7.7 1.6 2 0 0 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|410671877|ref|YP_006924248.1| - 2.8e-18 66.3 0.2 2.8e-18 66.3 0.1 2.1 2 0 0 2 2 2 1 MacB-like periplasmic core domain ABC_tran PF00005.22 gi|410671878|ref|YP_006924249.1| - 6.9e-35 120.3 0.0 9.9e-35 119.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|410671878|ref|YP_006924249.1| - 1.7e-06 27.4 0.3 0.00093 18.4 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|410671878|ref|YP_006924249.1| - 3.5e-06 27.2 0.0 0.094 12.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|410671878|ref|YP_006924249.1| - 0.0025 17.3 0.1 0.0054 16.2 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|410671878|ref|YP_006924249.1| - 0.003 16.7 0.1 0.0051 16.0 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|410671878|ref|YP_006924249.1| - 0.0057 16.1 0.0 0.0082 15.6 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_22 PF13401.1 gi|410671878|ref|YP_006924249.1| - 0.0087 16.2 0.2 0.032 14.3 0.1 1.9 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|410671878|ref|YP_006924249.1| - 0.015 15.0 0.3 3.3 7.4 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_16 PF13191.1 gi|410671878|ref|YP_006924249.1| - 0.017 15.1 0.1 0.02 14.8 0.1 1.3 1 1 0 1 1 1 0 AAA ATPase domain PhoH PF02562.11 gi|410671878|ref|YP_006924249.1| - 0.025 13.8 0.1 2 7.6 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein T2SE PF00437.15 gi|410671878|ref|YP_006924249.1| - 0.04 12.8 0.1 0.091 11.6 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_17 PF13207.1 gi|410671878|ref|YP_006924249.1| - 0.047 14.5 0.0 0.065 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|410671878|ref|YP_006924249.1| - 0.052 12.4 0.1 0.075 11.8 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.1 gi|410671878|ref|YP_006924249.1| - 0.067 12.5 0.1 0.18 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|410671878|ref|YP_006924249.1| - 0.07 12.5 0.1 0.11 11.9 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|410671878|ref|YP_006924249.1| - 0.08 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin cobW PF02492.14 gi|410671878|ref|YP_006924249.1| - 0.099 12.0 0.1 0.18 11.2 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|410671878|ref|YP_006924249.1| - 0.14 11.8 0.5 0.25 10.9 0.3 1.5 1 1 0 1 1 1 0 NACHT domain DUF2318 PF10080.4 gi|410671879|ref|YP_006924250.1| - 5.1e-08 32.6 0.1 8.8e-08 31.8 0.1 1.4 1 1 0 1 1 1 1 Predicted membrane protein (DUF2318) OrfB_Zn_ribbon PF07282.6 gi|410671879|ref|YP_006924250.1| - 0.004 16.7 0.3 0.0067 16.0 0.2 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|410671879|ref|YP_006924250.1| - 0.087 12.6 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon ADH_zinc_N_2 PF13602.1 gi|410671880|ref|YP_006924251.1| - 7.9e-27 94.6 0.3 1.1e-25 90.9 0.1 2.2 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.21 gi|410671880|ref|YP_006924251.1| - 5e-19 68.1 0.0 1.1e-18 67.0 0.0 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|410671880|ref|YP_006924251.1| - 6.8e-11 41.8 0.0 2.3e-10 40.1 0.0 1.9 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain NAD_binding_10 PF13460.1 gi|410671880|ref|YP_006924251.1| - 0.0018 18.2 0.1 0.012 15.6 0.0 2.1 2 0 0 2 2 2 1 NADH(P)-binding CMAS PF02353.15 gi|410671880|ref|YP_006924251.1| - 0.0066 15.5 0.2 0.013 14.5 0.1 1.5 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase DUF2493 PF10686.4 gi|410671880|ref|YP_006924251.1| - 0.0079 15.7 0.1 0.019 14.4 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2493) AlaDh_PNT_C PF01262.16 gi|410671880|ref|YP_006924251.1| - 0.014 14.9 0.2 0.032 13.7 0.1 1.6 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.20 gi|410671880|ref|YP_006924251.1| - 0.017 15.0 0.0 0.083 12.8 0.0 2.1 2 0 0 2 2 2 0 short chain dehydrogenase SHOCT PF09851.4 gi|410671880|ref|YP_006924251.1| - 0.03 13.7 0.1 0.1 12.1 0.0 1.9 2 0 0 2 2 2 0 Short C-terminal domain NmrA PF05368.8 gi|410671880|ref|YP_006924251.1| - 0.056 12.6 0.1 0.35 10.0 0.0 2.3 3 0 0 3 3 3 0 NmrA-like family 2-Hacid_dh_C PF02826.14 gi|410671880|ref|YP_006924251.1| - 0.11 11.5 0.1 0.25 10.4 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain tRNA-synt_2b PF00587.20 gi|410671881|ref|YP_006924252.1| - 1.6e-11 44.1 0.0 2.5e-11 43.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Y1_Tnp PF01797.11 gi|410671881|ref|YP_006924252.1| - 0.12 12.2 0.1 3.6 7.4 0.0 2.7 3 0 0 3 3 3 0 Transposase IS200 like UDG PF03167.14 gi|410671882|ref|YP_006924253.1| - 1.7e-38 131.5 0.0 2.1e-38 131.1 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily PLU-1 PF08429.6 gi|410671883|ref|YP_006924254.1| - 0.053 12.4 0.3 0.062 12.1 0.2 1.1 1 0 0 1 1 1 0 PLU-1-like protein DHH PF01368.15 gi|410671884|ref|YP_006924255.1| - 1.7e-15 56.9 0.6 2.9e-15 56.1 0.4 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|410671884|ref|YP_006924255.1| - 5.2e-13 48.4 0.3 2e-12 46.6 0.2 2.1 1 0 0 1 1 1 1 DHHA1 domain NTP_transferase PF00483.18 gi|410671885|ref|YP_006924256.1| - 1.3e-47 162.1 0.0 1.7e-47 161.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|410671885|ref|YP_006924256.1| - 1.2e-14 53.0 19.3 2.1e-06 26.9 2.8 5.0 2 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|410671885|ref|YP_006924256.1| - 1.2e-13 51.4 0.0 1.7e-13 50.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|410671885|ref|YP_006924256.1| - 2.2e-09 36.7 16.5 6.5e-06 25.5 2.8 4.1 3 1 1 4 4 4 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|410671885|ref|YP_006924256.1| - 1.4e-06 28.0 0.0 3e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|410671885|ref|YP_006924256.1| - 0.00024 20.8 0.0 0.00049 19.7 0.0 1.4 1 0 0 1 1 1 1 Cytidylyltransferase PGM_PMM_I PF02878.11 gi|410671886|ref|YP_006924257.1| - 4.2e-38 129.9 0.0 7.5e-38 129.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|410671886|ref|YP_006924257.1| - 7.9e-25 87.1 0.1 1.7e-24 86.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|410671886|ref|YP_006924257.1| - 1.4e-19 70.2 0.0 2.5e-19 69.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|410671886|ref|YP_006924257.1| - 4.9e-10 39.2 0.1 1.8e-09 37.4 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_18 PF12847.2 gi|410671886|ref|YP_006924257.1| - 0.031 14.8 0.1 0.1 13.1 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain SIS PF01380.17 gi|410671887|ref|YP_006924258.1| - 1.2e-59 199.6 2.6 4e-29 100.8 0.1 2.8 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.1 gi|410671887|ref|YP_006924258.1| - 3.7e-23 81.9 0.1 1.5e-22 80.0 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|410671887|ref|YP_006924258.1| - 5.1e-20 71.4 0.0 6.8e-15 54.6 0.0 2.3 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|410671887|ref|YP_006924258.1| - 7.2e-17 61.2 0.0 1.9e-16 59.8 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|410671887|ref|YP_006924258.1| - 1.8e-05 23.5 0.0 3.4e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II UTP15_C PF09384.5 gi|410671887|ref|YP_006924258.1| - 0.064 12.9 0.1 0.13 11.9 0.1 1.5 1 0 0 1 1 1 0 UTP15 C terminal NTP_transferase PF00483.18 gi|410671888|ref|YP_006924259.1| - 5.2e-32 111.1 0.0 7.3e-32 110.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|410671888|ref|YP_006924259.1| - 9.7e-19 65.9 29.8 6e-10 38.1 3.2 5.4 3 1 3 6 6 6 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|410671888|ref|YP_006924259.1| - 1.9e-11 43.3 24.2 1.1e-06 28.0 3.7 4.7 3 2 2 5 5 5 4 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.2 gi|410671888|ref|YP_006924259.1| - 2e-09 37.7 0.0 2.5e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Fucokinase PF07959.7 gi|410671888|ref|YP_006924259.1| - 1.5 7.3 6.1 0.63 8.5 1.2 2.3 1 1 2 3 3 3 0 L-fucokinase Ribosomal_S15 PF00312.17 gi|410671889|ref|YP_006924260.1| - 5.4e-17 61.3 1.1 6.7e-17 61.0 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S15 Ribosomal_S13_N PF08069.7 gi|410671889|ref|YP_006924260.1| - 6.9e-11 41.8 0.1 1.8e-10 40.5 0.1 1.7 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Antigen_Bd37 PF11641.3 gi|410671889|ref|YP_006924260.1| - 0.03 13.6 0.1 0.039 13.2 0.1 1.2 1 0 0 1 1 1 0 Glycosylphosphatidylinositol-anchored merozoite surface protein DUF772 PF05598.6 gi|410671892|ref|YP_006924263.1| - 1.5e-21 76.0 0.1 5.3e-21 74.3 0.0 1.8 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|410671892|ref|YP_006924263.1| - 2.9e-12 46.6 0.8 1.4e-10 41.0 0.6 2.2 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|410671892|ref|YP_006924263.1| - 0.00028 20.5 0.1 0.0005 19.7 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|410671892|ref|YP_006924263.1| - 0.00041 20.1 0.1 0.00075 19.2 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|410671892|ref|YP_006924263.1| - 0.021 14.8 0.1 0.043 13.8 0.1 1.5 1 0 0 1 1 1 0 Transposase DDE domain HTH_Tnp_Mu_1 PF02316.11 gi|410671893|ref|YP_006924264.1| - 0.058 13.1 0.1 0.079 12.6 0.0 1.2 1 0 0 1 1 1 0 Mu DNA-binding domain OppC_N PF12911.2 gi|410671894|ref|YP_006924265.1| - 0.72 9.2 2.4 2.3 7.6 0.1 2.5 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C tRNA-synt_His PF13393.1 gi|410671897|ref|YP_006924268.1| - 4.7e-65 219.6 0.0 5.9e-65 219.3 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|410671897|ref|YP_006924268.1| - 7.2e-28 97.3 0.2 1.1e-27 96.6 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|410671897|ref|YP_006924268.1| - 6.7e-10 38.7 0.0 1.3e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|410671897|ref|YP_006924268.1| - 2.2e-07 29.9 0.8 0.0033 16.2 0.1 2.9 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|410671897|ref|YP_006924268.1| - 0.00026 20.2 0.0 0.0018 17.4 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) PALP PF00291.20 gi|410671898|ref|YP_006924269.1| - 3.5e-35 121.7 0.0 4.5e-35 121.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Pec_lyase PF09492.5 gi|410671899|ref|YP_006924270.1| - 0.00011 21.4 0.2 0.0019 17.4 0.0 2.2 1 1 1 2 2 2 1 Pectic acid lyase Prenyltrans_1 PF13243.1 gi|410671899|ref|YP_006924270.1| - 0.00021 21.2 0.0 0.11 12.5 0.0 2.7 1 1 1 2 2 2 2 Prenyltransferase-like Prenyltrans_2 PF13249.1 gi|410671899|ref|YP_006924270.1| - 0.00021 21.6 0.0 0.0022 18.3 0.0 2.6 2 1 0 2 2 2 1 Prenyltransferase-like Glyco_hydro_15 PF00723.16 gi|410671899|ref|YP_006924270.1| - 0.0026 16.3 0.2 0.064 11.8 0.3 2.3 1 1 1 2 2 2 1 Glycosyl hydrolases family 15 Prenyltrans PF00432.16 gi|410671899|ref|YP_006924270.1| - 0.031 13.8 0.0 25 4.5 0.0 3.4 3 0 0 3 3 3 0 Prenyltransferase and squalene oxidase repeat DUF608 PF04685.8 gi|410671899|ref|YP_006924270.1| - 0.034 12.8 0.0 0.064 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF608 Hydrolase_3 PF08282.7 gi|410671901|ref|YP_006924272.1| - 9.4e-19 67.9 0.0 1.4e-18 67.4 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|410671901|ref|YP_006924272.1| - 7.5e-07 29.4 3.1 4.8e-05 23.6 2.2 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|410671901|ref|YP_006924272.1| - 9.5e-07 28.3 0.0 0.013 14.7 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.1 gi|410671901|ref|YP_006924272.1| - 1.5e-06 27.9 0.0 3.2e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|410671901|ref|YP_006924272.1| - 0.062 13.5 0.5 3.3 7.8 0.1 2.4 2 1 1 3 3 3 0 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|410671901|ref|YP_006924272.1| - 0.075 13.4 1.6 11 6.3 0.0 3.1 2 2 2 4 4 4 0 haloacid dehalogenase-like hydrolase YonK PF09642.5 gi|410671901|ref|YP_006924272.1| - 0.12 12.0 0.0 0.47 10.1 0.0 2.0 1 0 0 1 1 1 0 YonK protein DEAD PF00270.24 gi|410671902|ref|YP_006924273.1| - 1.2e-29 102.9 0.0 2.6e-29 101.8 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|410671902|ref|YP_006924273.1| - 4.4e-08 33.1 0.1 3.2e-07 30.4 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|410671902|ref|YP_006924273.1| - 8.3e-08 31.9 0.0 2.3e-07 30.5 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|410671902|ref|YP_006924273.1| - 3.7e-06 26.8 0.0 7.3e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.4 gi|410671902|ref|YP_006924273.1| - 6.4e-05 22.4 0.0 0.00018 20.9 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Sec63 PF02889.11 gi|410671902|ref|YP_006924273.1| - 0.001 18.3 0.0 0.0015 17.8 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain Cdd1 PF11731.3 gi|410671902|ref|YP_006924273.1| - 0.051 13.4 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Pathogenicity locus Histidinol_dh PF00815.15 gi|410671903|ref|YP_006924274.1| - 2.9e-167 556.4 1.9 3.5e-167 556.2 1.3 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DUF1699 PF08004.6 gi|410671904|ref|YP_006924275.1| - 8.2e-67 222.7 1.4 9.2e-67 222.5 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Glyco_hydro_2_N PF02837.13 gi|410671905|ref|YP_006924276.1| - 0.05 13.1 0.0 0.23 11.0 0.0 1.9 2 0 0 2 2 2 0 Glycosyl hydrolases family 2, sugar binding domain TP_methylase PF00590.15 gi|410671906|ref|YP_006924277.1| - 1.4e-53 181.7 0.1 1.7e-53 181.4 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|410671906|ref|YP_006924277.1| - 0.0028 17.8 0.0 0.0063 16.6 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily HEM4 PF02602.10 gi|410671907|ref|YP_006924278.1| - 6.1e-41 140.1 0.0 6.9e-41 139.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Nitro_FeMo-Co PF02579.12 gi|410671907|ref|YP_006924278.1| - 0.016 15.2 0.1 1.5 8.9 0.0 2.5 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor Aa_trans PF01490.13 gi|410671907|ref|YP_006924278.1| - 0.019 13.4 0.0 0.025 13.0 0.0 1.1 1 0 0 1 1 1 0 Transmembrane amino acid transporter protein CytB6-F_Fe-S PF08802.5 gi|410671907|ref|YP_006924278.1| - 0.078 12.9 1.1 0.14 12.1 0.8 1.4 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit Radical_SAM PF04055.16 gi|410671908|ref|YP_006924279.1| - 1.4e-22 80.6 0.1 5.2e-22 78.7 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|410671908|ref|YP_006924279.1| - 3e-12 46.8 0.0 6.4e-12 45.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|410671908|ref|YP_006924279.1| - 1.7e-10 40.9 0.0 3.5e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.19 gi|410671908|ref|YP_006924279.1| - 0.052 12.8 0.0 0.54 9.5 0.0 2.2 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel Glyco_hydro_97 PF10566.4 gi|410671908|ref|YP_006924279.1| - 0.092 11.8 0.0 0.14 11.2 0.0 1.4 1 0 0 1 1 1 0 Glycoside hydrolase 97 Desulfoferrodox PF01880.13 gi|410671909|ref|YP_006924280.1| - 2.5e-24 85.3 1.3 2.9e-24 85.1 0.9 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin tRNA-synt_1 PF00133.17 gi|410671911|ref|YP_006924282.1| - 8.8e-130 433.5 0.6 5.4e-129 430.9 0.4 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|410671911|ref|YP_006924282.1| - 1.3e-37 128.9 0.0 2e-37 128.2 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|410671911|ref|YP_006924282.1| - 6.1e-25 87.6 0.1 3.1e-12 45.8 0.0 3.6 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|410671911|ref|YP_006924282.1| - 5.8e-07 28.9 0.0 0.00045 19.4 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|410671911|ref|YP_006924282.1| - 0.001 18.4 0.0 0.014 14.6 0.0 2.3 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|410671911|ref|YP_006924282.1| - 0.0036 16.0 0.0 0.024 13.3 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|410671911|ref|YP_006924282.1| - 0.054 12.3 0.0 2.6 6.7 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (R) tRNA-synt_1b PF00579.20 gi|410671911|ref|YP_006924282.1| - 0.23 10.5 0.0 0.75 8.8 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) PUA PF01472.15 gi|410671912|ref|YP_006924283.1| - 1.8e-19 69.1 0.9 3.2e-19 68.4 0.6 1.4 1 0 0 1 1 1 1 PUA domain A2L_zn_ribbon PF08792.5 gi|410671913|ref|YP_006924284.1| - 0.0099 15.3 0.1 0.015 14.7 0.1 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain DUF552 PF04472.7 gi|410671914|ref|YP_006924285.1| - 1.4e-17 63.3 1.9 2.2e-17 62.7 1.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF552) Borrelia_P83 PF05262.6 gi|410671914|ref|YP_006924285.1| - 0.05 11.8 0.7 0.052 11.8 0.5 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein zf-ZPR1 PF03367.8 gi|410671915|ref|YP_006924286.1| - 6e-41 139.2 0.0 7.6e-41 138.9 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain DUF3943 PF13084.1 gi|410671915|ref|YP_006924286.1| - 0.14 11.6 0.0 0.41 10.2 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3943) AhpC-TSA PF00578.16 gi|410671916|ref|YP_006924287.1| - 9.6e-30 102.8 0.0 1.3e-29 102.4 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.4 gi|410671916|ref|YP_006924287.1| - 1.4e-11 43.8 0.8 2.9e-11 42.8 0.6 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.5 gi|410671916|ref|YP_006924287.1| - 4.3e-10 39.3 0.0 1.9e-09 37.1 0.0 1.9 1 1 0 1 1 1 1 Redoxin DUF4511 PF14974.1 gi|410671916|ref|YP_006924287.1| - 0.13 12.0 0.0 0.42 10.3 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4511) tRNA-synt_2b PF00587.20 gi|410671917|ref|YP_006924288.1| - 1.7e-20 73.3 0.1 4e-20 72.1 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|410671917|ref|YP_006924288.1| - 1.8e-19 69.4 0.0 3.8e-19 68.4 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|410671917|ref|YP_006924288.1| - 1.1e-15 57.2 0.6 2.3e-15 56.2 0.4 1.5 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal DBI_PRT PF02277.12 gi|410671918|ref|YP_006924289.1| - 1.8e-19 70.0 0.4 2.8e-19 69.4 0.3 1.2 1 0 0 1 1 1 1 Phosphoribosyltransferase Response_reg PF00072.19 gi|410671919|ref|YP_006924290.1| - 6.4e-29 100.2 0.6 1.6e-28 98.9 0.1 1.8 2 0 0 2 2 2 1 Response regulator receiver domain PAS_9 PF13426.1 gi|410671919|ref|YP_006924290.1| - 1.2e-09 38.4 0.0 5.3e-09 36.4 0.0 1.9 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|410671919|ref|YP_006924290.1| - 2.1e-08 33.9 0.0 3.9e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|410671919|ref|YP_006924290.1| - 1.8e-06 27.9 0.0 4.1e-06 26.7 0.0 1.6 2 0 0 2 2 2 1 PAS fold PAS_3 PF08447.6 gi|410671919|ref|YP_006924290.1| - 0.016 15.3 0.0 0.027 14.5 0.0 1.4 1 0 0 1 1 1 0 PAS fold DUF2101 PF09874.4 gi|410671919|ref|YP_006924290.1| - 0.038 13.4 0.1 0.062 12.7 0.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) Ribosomal_L15e PF00827.12 gi|410671920|ref|YP_006924291.1| - 2.7e-85 284.7 8.3 3.2e-85 284.5 5.8 1.0 1 0 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.12 gi|410671921|ref|YP_006924292.1| - 2.5e-32 111.4 0.0 2.9e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 RNA binding RNase_P_p30 PF01876.11 gi|410671922|ref|YP_006924293.1| - 1.7e-32 111.7 0.1 2.1e-32 111.4 0.1 1.1 1 0 0 1 1 1 1 RNase P subunit p30 PHP PF02811.14 gi|410671922|ref|YP_006924293.1| - 0.0085 15.8 0.0 0.0094 15.7 0.0 1.2 1 0 0 1 1 1 1 PHP domain Amidohydro_4 PF13147.1 gi|410671922|ref|YP_006924293.1| - 0.0088 16.1 0.0 0.051 13.6 0.0 1.9 2 1 0 2 2 2 1 Amidohydrolase RNase_P_Rpp14 PF01900.14 gi|410671923|ref|YP_006924294.1| - 9.3e-19 67.3 0.1 1.1e-18 67.1 0.0 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.21 gi|410671924|ref|YP_006924295.1| - 1.8e-59 200.2 0.2 2.4e-59 199.8 0.2 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|410671924|ref|YP_006924295.1| - 2.9e-15 55.2 0.2 1.3e-14 53.1 0.1 2.1 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature SBDS PF01172.13 gi|410671925|ref|YP_006924296.1| - 2.7e-27 94.3 0.3 4.9e-27 93.5 0.2 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|410671925|ref|YP_006924296.1| - 1.5e-23 82.8 0.4 2.3e-23 82.2 0.3 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain BOF PF04076.8 gi|410671925|ref|YP_006924296.1| - 0.023 14.5 0.1 0.045 13.5 0.1 1.6 1 0 0 1 1 1 0 Bacterial OB fold (BOF) protein DUF2023 PF09633.5 gi|410671925|ref|YP_006924296.1| - 0.12 12.2 0.2 12 5.9 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2023) KH_1 PF00013.24 gi|410671926|ref|YP_006924297.1| - 1.7e-08 33.9 0.2 5.5e-08 32.3 0.1 1.9 1 1 0 1 1 1 1 KH domain ECR1_N PF14382.1 gi|410671926|ref|YP_006924297.1| - 1.8e-08 33.5 0.1 3.8e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_3 PF13014.1 gi|410671926|ref|YP_006924297.1| - 1.9e-05 24.1 0.2 5.6e-05 22.6 0.0 2.0 2 0 0 2 2 2 1 KH domain KH_2 PF07650.12 gi|410671926|ref|YP_006924297.1| - 0.00055 19.4 0.2 0.0013 18.1 0.1 1.6 1 0 0 1 1 1 1 KH domain S1 PF00575.18 gi|410671926|ref|YP_006924297.1| - 0.0012 18.8 0.0 0.005 16.8 0.0 2.1 2 1 0 2 2 2 1 S1 RNA binding domain PapC_C PF13953.1 gi|410671926|ref|YP_006924297.1| - 0.14 11.8 0.1 0.67 9.6 0.0 2.1 2 0 0 2 2 2 0 PapC C-terminal domain RNase_PH PF01138.16 gi|410671927|ref|YP_006924298.1| - 1.3e-32 112.8 0.2 2.7e-32 111.8 0.0 1.6 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|410671927|ref|YP_006924298.1| - 5.7e-19 67.8 0.3 1.4e-18 66.5 0.2 1.7 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|410671928|ref|YP_006924299.1| - 2.1e-26 92.7 0.0 3.3e-26 92.1 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|410671928|ref|YP_006924299.1| - 1.3e-08 34.5 0.5 2.5e-08 33.7 0.3 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.14 gi|410671929|ref|YP_006924300.1| - 2.3e-30 104.2 4.7 2.6e-30 104.1 3.2 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family C1_1 PF00130.17 gi|410671929|ref|YP_006924300.1| - 0.056 13.1 2.3 0.085 12.6 1.6 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.2 gi|410671929|ref|YP_006924300.1| - 0.061 13.1 4.5 0.094 12.5 3.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Rep_fac-A_C PF08646.5 gi|410671929|ref|YP_006924300.1| - 0.087 12.5 0.4 0.11 12.2 0.3 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain zf-H2C2_2 PF13465.1 gi|410671929|ref|YP_006924300.1| - 0.19 12.0 2.4 0.79 10.1 0.6 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-RanBP PF00641.13 gi|410671929|ref|YP_006924300.1| - 6 6.0 7.0 1.6 7.9 0.9 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DNA_RNApol_7kD PF03604.8 gi|410671930|ref|YP_006924301.1| - 1.2e-08 34.2 8.9 1.8e-08 33.7 6.1 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|410671930|ref|YP_006924301.1| - 0.00015 21.1 8.4 0.0042 16.5 1.7 1.7 1 1 1 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|410671930|ref|YP_006924301.1| - 0.00024 20.3 2.3 0.0003 20.0 1.6 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|410671930|ref|YP_006924301.1| - 0.00034 19.7 0.4 0.048 12.8 0.0 2.0 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.14 gi|410671930|ref|YP_006924301.1| - 0.0013 18.3 0.4 0.0013 18.3 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF951 PF06107.6 gi|410671930|ref|YP_006924301.1| - 0.0015 17.9 3.2 0.086 12.3 0.1 2.0 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF951) OrfB_Zn_ribbon PF07282.6 gi|410671930|ref|YP_006924301.1| - 0.0029 17.2 2.1 0.0047 16.5 1.5 1.5 1 1 0 1 1 1 1 Putative transposase DNA-binding domain Cys_rich_CPXG PF14255.1 gi|410671930|ref|YP_006924301.1| - 0.0047 16.7 2.0 0.016 15.0 0.1 2.0 2 0 0 2 2 2 1 Cysteine-rich CPXCG zf-ISL3 PF14690.1 gi|410671930|ref|YP_006924301.1| - 0.0047 16.9 3.5 0.013 15.5 0.5 2.0 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-RING_3 PF14369.1 gi|410671930|ref|YP_006924301.1| - 0.0078 16.1 1.1 0.011 15.6 0.8 1.3 1 0 0 1 1 1 1 zinc-finger A2L_zn_ribbon PF08792.5 gi|410671930|ref|YP_006924301.1| - 0.0086 15.5 2.2 1.1 8.8 0.4 2.1 2 0 0 2 2 2 1 A2L zinc ribbon domain CpXC PF14353.1 gi|410671930|ref|YP_006924301.1| - 0.012 15.5 2.2 0.82 9.6 0.1 2.0 1 1 1 2 2 2 0 CpXC protein Zn_Tnp_IS1595 PF12760.2 gi|410671930|ref|YP_006924301.1| - 0.012 15.3 4.0 0.24 11.2 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF329 PF03884.9 gi|410671930|ref|YP_006924301.1| - 0.026 14.0 1.5 1.5 8.4 1.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) zinc_ribbon_4 PF13717.1 gi|410671930|ref|YP_006924301.1| - 0.031 13.9 3.9 0.77 9.5 2.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|410671930|ref|YP_006924301.1| - 0.033 13.7 3.9 0.68 9.5 2.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|410671930|ref|YP_006924301.1| - 0.041 13.7 0.7 0.082 12.7 0.5 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2_4 PF13894.1 gi|410671930|ref|YP_006924301.1| - 0.044 14.1 1.0 2.4 8.6 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Prok-RING_1 PF14446.1 gi|410671930|ref|YP_006924301.1| - 0.049 13.3 1.5 1.1 8.9 0.0 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 DUF2072 PF09845.4 gi|410671930|ref|YP_006924301.1| - 0.05 13.5 0.7 0.05 13.5 0.5 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) TFIIS_C PF01096.13 gi|410671930|ref|YP_006924301.1| - 0.053 13.1 2.5 3.4 7.3 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_6 PF14599.1 gi|410671930|ref|YP_006924301.1| - 0.076 12.8 1.4 0.089 12.5 1.0 1.1 1 0 0 1 1 1 0 Zinc-ribbon zf-Di19 PF05605.7 gi|410671930|ref|YP_006924301.1| - 0.076 13.1 0.4 0.52 10.4 0.0 1.9 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Ribosomal_S27e PF01667.12 gi|410671930|ref|YP_006924301.1| - 0.079 12.5 1.0 0.32 10.5 0.7 1.8 1 1 0 1 1 1 0 Ribosomal protein S27 Sgf11 PF08209.6 gi|410671930|ref|YP_006924301.1| - 0.11 11.8 2.8 2.5 7.4 0.4 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) C1_1 PF00130.17 gi|410671930|ref|YP_006924301.1| - 0.19 11.5 1.3 0.35 10.6 0.9 1.5 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HNH PF01844.18 gi|410671930|ref|YP_006924301.1| - 0.24 11.2 1.4 12 5.8 0.1 2.1 2 0 0 2 2 2 0 HNH endonuclease zf-AN1 PF01428.11 gi|410671930|ref|YP_006924301.1| - 0.26 11.2 2.7 1.6 8.6 2.0 1.9 1 1 1 2 2 2 0 AN1-like Zinc finger DUF2197 PF09963.4 gi|410671930|ref|YP_006924301.1| - 0.31 11.0 2.2 4.8 7.2 0.3 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) Cys_rich_KTR PF14205.1 gi|410671930|ref|YP_006924301.1| - 0.31 10.5 4.2 0.71 9.3 0.3 2.0 1 1 1 2 2 2 0 Cysteine-rich KTR zf-LITAF-like PF10601.4 gi|410671930|ref|YP_006924301.1| - 0.34 10.8 1.8 3.1 7.7 0.0 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-TFIIB PF13453.1 gi|410671930|ref|YP_006924301.1| - 0.36 10.0 2.0 0.71 9.1 1.4 1.5 1 1 0 1 1 1 0 Transcription factor zinc-finger DiS_P_DiS PF06750.8 gi|410671930|ref|YP_006924301.1| - 0.46 10.2 2.2 9.7 6.0 0.1 2.0 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain Zn-ribbon_8 PF09723.5 gi|410671930|ref|YP_006924301.1| - 0.53 10.2 7.9 3.5 7.6 5.4 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-FCS PF06467.9 gi|410671930|ref|YP_006924301.1| - 0.63 9.7 4.2 0.71 9.5 0.1 2.0 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif zf-C2H2 PF00096.21 gi|410671930|ref|YP_006924301.1| - 0.98 9.9 3.9 9.2 6.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Mu-like_Com PF10122.4 gi|410671930|ref|YP_006924301.1| - 1.6 7.8 7.2 32 3.6 1.6 2.2 1 1 0 1 1 1 0 Mu-like prophage protein Com zf-C2HC_2 PF13913.1 gi|410671930|ref|YP_006924301.1| - 1.9 8.2 5.7 10 5.9 0.9 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type DUF2296 PF10058.4 gi|410671930|ref|YP_006924301.1| - 3.8 7.3 5.1 43 3.9 3.4 2.1 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) UPF0547 PF10571.4 gi|410671930|ref|YP_006924301.1| - 6.8 6.4 7.6 0.62 9.8 1.5 1.9 3 0 0 3 3 2 0 Uncharacterised protein family UPF0547 Zn_ribbon_recom PF13408.1 gi|410671930|ref|YP_006924301.1| - 8.1 6.7 7.3 1.3 9.3 0.5 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Prefoldin_2 PF01920.15 gi|410671933|ref|YP_006924304.1| - 3.6e-19 68.4 23.4 4.1e-19 68.3 16.2 1.0 1 0 0 1 1 1 1 Prefoldin subunit SRP54 PF00448.17 gi|410671933|ref|YP_006924304.1| - 0.041 13.3 5.8 0.046 13.1 4.0 1.1 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Binary_toxB PF03495.9 gi|410671933|ref|YP_006924304.1| - 0.057 12.0 4.0 0.067 11.8 2.8 1.0 1 0 0 1 1 1 0 Clostridial binary toxin B/anthrax toxin PA DUF3877 PF12993.2 gi|410671933|ref|YP_006924304.1| - 0.14 11.6 1.7 0.14 11.6 0.4 1.5 1 1 1 2 2 2 0 Domain of unknown function, E. rectale Gene description (DUF3877) Cas_GSU0054 PF09609.5 gi|410671933|ref|YP_006924304.1| - 0.16 10.7 0.6 0.19 10.5 0.4 1.0 1 0 0 1 1 1 0 CRISPR-associated protein, GSU0054 family (Cas_GSU0054) GAS PF13851.1 gi|410671933|ref|YP_006924304.1| - 0.54 9.4 17.4 0.85 8.7 12.1 1.3 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DASH_Dam1 PF08653.5 gi|410671933|ref|YP_006924304.1| - 0.63 9.8 4.5 0.81 9.5 0.1 2.7 2 2 0 2 2 2 0 DASH complex subunit Dam1 DUF1825 PF08855.5 gi|410671933|ref|YP_006924304.1| - 0.68 9.9 9.3 1.1 9.3 6.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1825) DUF4559 PF15112.1 gi|410671933|ref|YP_006924304.1| - 0.88 8.6 9.2 0.98 8.5 6.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) Nup54 PF13874.1 gi|410671933|ref|YP_006924304.1| - 1.1 8.8 17.7 6.4 6.4 12.2 1.9 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 DUF4239 PF14023.1 gi|410671933|ref|YP_006924304.1| - 1.4 8.2 5.1 1.3 8.3 2.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4239) Tropomyosin_1 PF12718.2 gi|410671933|ref|YP_006924304.1| - 1.5 8.6 18.9 2.2 8.1 5.0 2.1 1 1 1 2 2 2 0 Tropomyosin like DUF948 PF06103.6 gi|410671933|ref|YP_006924304.1| - 1.8 8.4 11.2 1.2 9.0 1.0 2.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) THOC7 PF05615.8 gi|410671933|ref|YP_006924304.1| - 1.8 8.8 14.9 33 4.7 10.4 2.0 1 1 0 1 1 1 0 Tho complex subunit 7 Mod_r PF07200.8 gi|410671933|ref|YP_006924304.1| - 2 8.3 19.7 9.5 6.1 13.7 1.8 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein DivIC PF04977.10 gi|410671933|ref|YP_006924304.1| - 2 7.9 19.7 1.2 8.6 6.2 2.3 1 1 1 2 2 2 0 Septum formation initiator Adeno_PIX PF03955.9 gi|410671933|ref|YP_006924304.1| - 2.4 8.7 12.3 7.2 7.1 3.9 2.2 1 1 1 2 2 2 0 Adenovirus hexon-associated protein (IX) Viral_P18 PF04521.8 gi|410671933|ref|YP_006924304.1| - 2.8 7.4 10.9 3.3 7.1 1.3 2.1 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein DUF2408 PF10303.4 gi|410671933|ref|YP_006924304.1| - 4.1 7.5 11.0 10 6.2 7.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Gp58 PF07902.6 gi|410671933|ref|YP_006924304.1| - 4.6 5.3 10.8 32 2.5 7.5 1.9 1 1 0 1 1 1 0 gp58-like protein Med10 PF09748.4 gi|410671933|ref|YP_006924304.1| - 6.4 6.6 10.3 2.8e+02 1.3 7.1 2.1 1 1 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex NPV_P10 PF05531.7 gi|410671933|ref|YP_006924304.1| - 9 6.6 12.7 7.9 6.8 0.6 2.4 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein APG6 PF04111.7 gi|410671933|ref|YP_006924304.1| - 9.9 5.1 18.4 18 4.2 12.8 1.4 1 1 0 1 1 1 0 Autophagy protein Apg6 DHH PF01368.15 gi|410671934|ref|YP_006924305.1| - 1.6e-10 40.7 0.2 4.5e-10 39.3 0.2 1.7 1 1 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|410671934|ref|YP_006924305.1| - 1.9e-06 27.4 1.0 4.3e-06 26.3 0.7 1.6 1 0 0 1 1 1 1 DHHA1 domain AMP-binding_C_2 PF14535.1 gi|410671935|ref|YP_006924306.1| - 1e-32 112.0 0.9 2.2e-32 110.9 0.5 1.7 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|410671935|ref|YP_006924306.1| - 2.9e-19 68.7 1.2 7e-19 67.5 0.8 1.6 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|410671935|ref|YP_006924306.1| - 2.6e-07 29.6 0.0 0.00034 19.3 0.0 2.2 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE GH3 PF03321.8 gi|410671935|ref|YP_006924306.1| - 0.0053 15.3 0.0 1.9 6.8 0.0 2.2 2 0 0 2 2 2 2 GH3 auxin-responsive promoter ACT PF01842.20 gi|410671936|ref|YP_006924307.1| - 2.4e-17 62.0 0.4 1.5e-08 33.9 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|410671936|ref|YP_006924307.1| - 3.4e-07 30.5 0.1 0.0048 17.2 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|410671936|ref|YP_006924307.1| - 0.011 15.2 0.2 2 7.9 0.0 2.5 2 1 0 2 2 2 0 ACT domain DUF2103 PF09876.4 gi|410671937|ref|YP_006924308.1| - 7.9e-37 125.1 0.5 9.1e-37 124.9 0.4 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) TPP_enzyme_C PF02775.16 gi|410671939|ref|YP_006924310.1| - 3.8e-11 42.7 0.1 8.6e-11 41.6 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|410671939|ref|YP_006924310.1| - 2.3e-07 30.5 0.0 3.7e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transket_pyr PF02779.19 gi|410671939|ref|YP_006924310.1| - 0.004 16.6 0.0 0.0087 15.5 0.0 1.5 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain DUF1743 PF08489.6 gi|410671940|ref|YP_006924311.1| - 9e-23 80.2 3.8 5.9e-21 74.4 0.0 3.0 3 1 1 4 4 4 2 Domain of unknown function (DUF1743) RadC PF04002.10 gi|410671941|ref|YP_006924312.1| - 5.3e-45 152.0 0.0 7.7e-45 151.5 0.0 1.2 1 0 0 1 1 1 1 RadC-like JAB domain HHH_2 PF12826.2 gi|410671941|ref|YP_006924312.1| - 0.00044 20.0 0.1 0.00088 19.1 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif Prok-JAB PF14464.1 gi|410671941|ref|YP_006924312.1| - 0.0021 17.5 0.0 0.0042 16.6 0.0 1.5 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain HhH-GPD PF00730.20 gi|410671941|ref|YP_006924312.1| - 0.0071 16.6 0.1 0.01 16.1 0.0 1.4 1 1 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|410671941|ref|YP_006924312.1| - 0.0079 16.3 0.0 0.022 14.8 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.18 gi|410671941|ref|YP_006924312.1| - 0.031 13.9 0.0 0.16 11.7 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix motif Ribosomal_S13 PF00416.17 gi|410671941|ref|YP_006924312.1| - 0.037 14.4 0.0 0.055 13.9 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S13/S18 Toxin-JAB1 PF15659.1 gi|410671941|ref|YP_006924312.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 JAB-like toxin 1 PMT_C PF11647.3 gi|410671941|ref|YP_006924312.1| - 0.12 12.0 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 C-terminal region of Pasteurella multocida toxin residues 569-1285 MoaE PF02391.12 gi|410671942|ref|YP_006924313.1| - 5.2e-27 93.9 0.4 8.7e-27 93.2 0.3 1.4 1 0 0 1 1 1 1 MoaE protein MobB PF03205.9 gi|410671942|ref|YP_006924313.1| - 6.3e-15 55.1 0.8 9.1e-15 54.5 0.1 1.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|410671942|ref|YP_006924313.1| - 0.0032 17.4 0.0 0.015 15.3 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain CbiA PF01656.18 gi|410671942|ref|YP_006924313.1| - 0.008 15.5 1.6 0.036 13.4 0.5 2.3 1 1 1 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.7 gi|410671942|ref|YP_006924313.1| - 0.025 14.2 0.1 0.11 12.1 0.0 1.9 2 0 0 2 2 2 0 NACHT domain HTH_24 PF13412.1 gi|410671943|ref|YP_006924314.1| - 1.4e-06 27.5 0.2 6.4e-06 25.4 0.2 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|410671943|ref|YP_006924314.1| - 6.3e-06 25.7 0.2 1.3e-05 24.7 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|410671943|ref|YP_006924314.1| - 1.8e-05 24.2 0.3 3.3e-05 23.4 0.2 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|410671943|ref|YP_006924314.1| - 0.00016 21.3 0.7 0.00034 20.2 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|410671943|ref|YP_006924314.1| - 0.00017 21.1 0.2 0.00017 21.1 0.2 1.7 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|410671943|ref|YP_006924314.1| - 0.00036 20.2 0.6 0.00064 19.4 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain RPA_C PF08784.6 gi|410671943|ref|YP_006924314.1| - 0.00052 20.3 0.0 0.00086 19.6 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal Put_DNA-bind_N PF06971.8 gi|410671943|ref|YP_006924314.1| - 0.00056 19.6 0.2 0.0015 18.2 0.0 1.8 2 0 0 2 2 2 1 Putative DNA-binding protein N-terminus MarR PF01047.17 gi|410671943|ref|YP_006924314.1| - 0.00059 19.4 0.2 0.0011 18.5 0.1 1.5 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|410671943|ref|YP_006924314.1| - 0.00062 19.8 0.1 0.0013 18.8 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.16 gi|410671943|ref|YP_006924314.1| - 0.00065 19.0 0.4 0.0017 17.7 0.3 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|410671943|ref|YP_006924314.1| - 0.0013 18.3 0.1 0.0025 17.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain PCI PF01399.22 gi|410671943|ref|YP_006924314.1| - 0.0028 17.9 0.0 0.0065 16.7 0.0 1.6 2 0 0 2 2 2 1 PCI domain ATP-cone PF03477.11 gi|410671943|ref|YP_006924314.1| - 0.0043 17.4 0.2 0.031 14.6 0.0 2.0 2 0 0 2 2 2 1 ATP cone domain EAP30 PF04157.11 gi|410671943|ref|YP_006924314.1| - 0.0064 15.6 0.0 0.0094 15.1 0.0 1.4 1 0 0 1 1 1 1 EAP30/Vps36 family HTH_CodY PF08222.6 gi|410671943|ref|YP_006924314.1| - 0.0092 15.3 0.0 0.018 14.3 0.0 1.6 1 1 0 1 1 1 1 CodY helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|410671943|ref|YP_006924314.1| - 0.013 15.3 0.1 0.026 14.3 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_10 PF04967.7 gi|410671943|ref|YP_006924314.1| - 0.014 14.9 0.2 0.059 12.9 0.0 2.1 2 0 0 2 2 2 0 HTH DNA binding domain Fe_dep_repress PF01325.14 gi|410671943|ref|YP_006924314.1| - 0.033 14.1 0.0 0.065 13.1 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_40 PF14493.1 gi|410671943|ref|YP_006924314.1| - 0.047 13.8 0.2 0.11 12.7 0.1 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain V-SNARE_C PF12352.3 gi|410671943|ref|YP_006924314.1| - 0.056 13.5 0.6 2.6 8.1 0.1 2.4 2 0 0 2 2 2 0 Snare region anchored in the vesicle membrane C-terminus HrcA_DNA-bdg PF03444.10 gi|410671943|ref|YP_006924314.1| - 0.11 11.8 0.7 1.1 8.7 0.1 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GerE PF00196.14 gi|410671943|ref|YP_006924314.1| - 0.17 11.2 0.9 0.63 9.3 0.0 2.3 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|410671943|ref|YP_006924314.1| - 0.43 10.0 2.9 0.62 9.5 0.0 2.5 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_12 PF08461.5 gi|410671943|ref|YP_006924314.1| - 0.66 9.7 3.9 0.65 9.7 0.9 2.3 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain Cpn10 PF00166.16 gi|410671944|ref|YP_006924315.1| - 6.1e-21 74.1 0.2 6.8e-21 74.0 0.1 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit Cpn60_TCP1 PF00118.19 gi|410671945|ref|YP_006924316.1| - 1.2e-128 429.7 14.9 1.4e-128 429.5 10.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DEAD PF00270.24 gi|410671946|ref|YP_006924317.1| - 3.3e-47 160.1 0.1 2.2e-46 157.4 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|410671946|ref|YP_006924317.1| - 9.8e-28 95.8 0.2 2e-27 94.8 0.1 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DUF1253 PF06862.7 gi|410671946|ref|YP_006924317.1| - 3.6e-06 25.6 0.1 0.0014 17.1 0.0 3.4 2 1 1 3 3 3 1 Protein of unknown function (DUF1253) ResIII PF04851.10 gi|410671946|ref|YP_006924317.1| - 1.6e-05 24.7 0.0 3.1e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|410671946|ref|YP_006924317.1| - 0.038 13.5 0.0 0.098 12.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain Phage_endo_I PF05367.6 gi|410671946|ref|YP_006924317.1| - 0.039 13.3 0.0 4.9 6.5 0.0 2.2 2 0 0 2 2 2 0 Phage endonuclease I AAA_19 PF13245.1 gi|410671946|ref|YP_006924317.1| - 0.043 13.5 0.5 0.28 10.9 0.0 2.7 3 0 0 3 3 3 0 Part of AAA domain Prog_receptor PF02161.10 gi|410671946|ref|YP_006924317.1| - 0.12 11.1 0.3 0.19 10.5 0.2 1.2 1 0 0 1 1 1 0 Progesterone receptor AAA_2 PF07724.9 gi|410671947|ref|YP_006924318.1| - 4.1e-57 192.8 0.0 5e-52 176.2 0.0 3.0 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) ClpB_D2-small PF10431.4 gi|410671947|ref|YP_006924318.1| - 8.2e-25 86.5 3.2 2.5e-24 84.9 0.2 3.0 2 0 0 2 2 2 1 C-terminal, D2-small domain, of ClpB protein AAA PF00004.24 gi|410671947|ref|YP_006924318.1| - 1.9e-23 83.1 0.1 7.7e-12 45.5 0.0 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Clp_N PF02861.15 gi|410671947|ref|YP_006924318.1| - 1.4e-22 79.3 0.7 4.8e-10 39.2 0.0 3.1 2 0 0 2 2 2 2 Clp amino terminal domain AAA_5 PF07728.9 gi|410671947|ref|YP_006924318.1| - 1.1e-17 64.0 0.3 1.2e-12 47.7 0.0 3.4 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|410671947|ref|YP_006924318.1| - 7.3e-13 48.9 3.3 0.00027 20.9 0.0 4.7 3 2 1 5 5 4 2 AAA ATPase domain AAA_22 PF13401.1 gi|410671947|ref|YP_006924318.1| - 3.6e-10 40.0 0.2 0.0038 17.3 0.0 4.0 2 2 1 3 3 3 2 AAA domain AAA_14 PF13173.1 gi|410671947|ref|YP_006924318.1| - 4.4e-09 36.3 0.0 0.0011 18.8 0.0 2.8 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|410671947|ref|YP_006924318.1| - 2.5e-07 30.3 0.0 0.00054 19.4 0.0 2.8 2 1 0 2 2 2 2 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|410671947|ref|YP_006924318.1| - 6.4e-07 28.9 0.0 0.013 14.9 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_17 PF13207.1 gi|410671947|ref|YP_006924318.1| - 4.3e-06 27.5 3.3 0.0055 17.5 0.0 3.9 2 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|410671947|ref|YP_006924318.1| - 1.1e-05 25.1 0.0 0.013 15.1 0.0 2.7 2 0 0 2 2 2 1 NACHT domain AAA_19 PF13245.1 gi|410671947|ref|YP_006924318.1| - 2.1e-05 24.2 0.0 0.34 10.6 0.0 2.9 2 0 0 2 2 2 2 Part of AAA domain DUF258 PF03193.11 gi|410671947|ref|YP_006924318.1| - 2.5e-05 23.5 0.0 0.19 10.9 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|410671947|ref|YP_006924318.1| - 2.7e-05 23.9 10.7 0.039 13.6 0.4 4.8 4 1 0 4 4 3 2 Archaeal ATPase DUF815 PF05673.8 gi|410671947|ref|YP_006924318.1| - 5.9e-05 22.1 0.3 0.38 9.6 0.1 3.3 3 1 0 3 3 3 2 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|410671947|ref|YP_006924318.1| - 0.00012 22.1 2.5 0.33 10.9 0.0 3.9 3 1 0 3 3 3 2 AAA domain Miro PF08477.8 gi|410671947|ref|YP_006924318.1| - 0.00012 22.5 0.3 0.37 11.3 0.0 3.1 3 0 0 3 3 2 1 Miro-like protein RNA_helicase PF00910.17 gi|410671947|ref|YP_006924318.1| - 0.00013 22.0 0.0 0.34 11.1 0.0 2.7 2 0 0 2 2 2 1 RNA helicase AAA_23 PF13476.1 gi|410671947|ref|YP_006924318.1| - 0.00014 22.2 16.5 0.016 15.5 0.0 3.6 3 1 0 3 3 3 1 AAA domain Zeta_toxin PF06414.7 gi|410671947|ref|YP_006924318.1| - 0.00017 20.7 0.1 0.003 16.6 0.0 2.7 3 0 0 3 3 2 1 Zeta toxin ABC_tran PF00005.22 gi|410671947|ref|YP_006924318.1| - 0.00024 21.3 0.1 0.13 12.5 0.0 3.4 3 0 0 3 3 3 1 ABC transporter T2SE PF00437.15 gi|410671947|ref|YP_006924318.1| - 0.00029 19.8 0.4 0.017 14.0 0.0 3.1 3 0 0 3 3 3 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|410671947|ref|YP_006924318.1| - 0.00042 20.6 5.0 0.16 12.2 0.0 3.7 4 0 0 4 4 3 1 AAA domain AAA_25 PF13481.1 gi|410671947|ref|YP_006924318.1| - 0.00066 19.1 0.8 1.6 8.1 0.0 3.5 3 1 0 3 3 2 1 AAA domain TrwB_AAD_bind PF10412.4 gi|410671947|ref|YP_006924318.1| - 0.0012 17.5 0.1 0.58 8.7 0.0 2.4 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain Bac_DnaA PF00308.13 gi|410671947|ref|YP_006924318.1| - 0.0016 18.1 0.1 2.5 7.6 0.0 3.6 3 0 0 3 3 3 1 Bacterial dnaA protein MobB PF03205.9 gi|410671947|ref|YP_006924318.1| - 0.0018 18.0 0.0 1.7 8.3 0.0 2.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|410671947|ref|YP_006924318.1| - 0.002 18.0 0.0 1.9 8.4 0.0 3.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_29 PF13555.1 gi|410671947|ref|YP_006924318.1| - 0.0032 16.9 0.0 3.9 7.0 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|410671947|ref|YP_006924318.1| - 0.0033 17.0 0.0 3.1 7.4 0.0 2.7 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 DNA_pol3_delta2 PF13177.1 gi|410671947|ref|YP_006924318.1| - 0.0038 16.9 0.0 0.02 14.5 0.0 2.2 2 0 0 2 2 2 1 DNA polymerase III, delta subunit HOOK PF05622.7 gi|410671947|ref|YP_006924318.1| - 0.0047 14.8 13.8 0.0086 13.9 9.6 1.4 1 0 0 1 1 1 1 HOOK protein AAA_3 PF07726.6 gi|410671947|ref|YP_006924318.1| - 0.0048 16.5 0.1 0.4 10.2 0.0 3.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|410671947|ref|YP_006924318.1| - 0.0052 16.5 0.1 6.6 6.4 0.0 3.3 3 0 0 3 3 3 0 NTPase ResIII PF04851.10 gi|410671947|ref|YP_006924318.1| - 0.0058 16.4 0.1 1.9 8.3 0.0 3.4 2 1 1 3 3 3 1 Type III restriction enzyme, res subunit AAA_10 PF12846.2 gi|410671947|ref|YP_006924318.1| - 0.0081 15.6 0.4 1.2 8.4 0.0 3.7 2 1 0 2 2 2 1 AAA-like domain Ras PF00071.17 gi|410671947|ref|YP_006924318.1| - 0.0095 15.3 0.1 4.3 6.6 0.0 3.1 3 0 0 3 3 2 0 Ras family Mg_chelatase PF01078.16 gi|410671947|ref|YP_006924318.1| - 0.012 14.7 0.6 7.8 5.5 0.0 3.4 3 1 0 4 4 3 0 Magnesium chelatase, subunit ChlI SRP54 PF00448.17 gi|410671947|ref|YP_006924318.1| - 0.019 14.4 0.1 5.7 6.3 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DUF87 PF01935.12 gi|410671947|ref|YP_006924318.1| - 0.019 14.7 11.4 0.37 10.5 0.0 4.6 5 0 0 5 5 5 0 Domain of unknown function DUF87 AAA_33 PF13671.1 gi|410671947|ref|YP_006924318.1| - 0.03 14.2 0.1 0.96 9.3 0.0 2.8 3 0 0 3 3 2 0 AAA domain VirE PF05272.6 gi|410671947|ref|YP_006924318.1| - 0.041 13.3 0.0 12 5.3 0.0 3.1 3 0 0 3 3 3 0 Virulence-associated protein E PduV-EutP PF10662.4 gi|410671947|ref|YP_006924318.1| - 0.052 13.0 0.0 2.8 7.4 0.0 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.1 gi|410671947|ref|YP_006924318.1| - 0.054 13.0 0.0 1.8 8.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|410671947|ref|YP_006924318.1| - 0.11 12.0 0.0 19 4.6 0.0 2.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_15 PF13175.1 gi|410671947|ref|YP_006924318.1| - 0.21 10.5 3.0 0.74 8.7 0.0 2.7 3 0 0 3 3 2 0 AAA ATPase domain AAA_13 PF13166.1 gi|410671947|ref|YP_006924318.1| - 0.58 8.5 8.1 0.96 7.8 5.6 1.2 1 0 0 1 1 1 0 AAA domain GP41 PF00517.12 gi|410671948|ref|YP_006924319.1| - 0.07 12.6 0.8 0.2 11.2 0.1 2.1 2 0 0 2 2 2 0 Retroviral envelope protein Baculo_PEP_C PF04513.7 gi|410671948|ref|YP_006924319.1| - 1.3 8.8 24.7 0.066 13.0 4.5 4.9 3 2 2 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF169 PF02596.10 gi|410671949|ref|YP_006924320.1| - 6.5e-70 234.8 0.1 7.8e-70 234.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 cobW PF02492.14 gi|410671951|ref|YP_006924322.1| - 1.6e-37 128.6 0.8 2.5e-37 128.0 0.6 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|410671951|ref|YP_006924322.1| - 0.0013 18.3 0.1 0.0031 17.2 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|410671951|ref|YP_006924322.1| - 0.0017 17.8 2.6 0.0037 16.6 0.3 2.2 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArgK PF03308.11 gi|410671951|ref|YP_006924322.1| - 0.0044 15.8 3.2 0.017 13.9 0.5 2.3 2 0 0 2 2 2 1 ArgK protein Glyco_transf_4 PF13439.1 gi|410671951|ref|YP_006924322.1| - 0.036 13.7 0.0 0.091 12.4 0.0 1.6 2 0 0 2 2 2 0 Glycosyltransferase Family 4 AAA_31 PF13614.1 gi|410671951|ref|YP_006924322.1| - 0.047 13.6 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|410671951|ref|YP_006924322.1| - 0.051 13.3 0.4 0.12 12.1 0.3 1.6 1 0 0 1 1 1 0 Part of AAA domain Zip PF02535.17 gi|410671951|ref|YP_006924322.1| - 0.054 12.4 1.2 0.065 12.2 0.8 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter SRP54 PF00448.17 gi|410671951|ref|YP_006924322.1| - 0.063 12.7 0.7 0.13 11.6 0.1 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.12 gi|410671951|ref|YP_006924322.1| - 0.07 12.6 1.9 2.2 7.7 0.3 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.1 gi|410671951|ref|YP_006924322.1| - 8.9 6.6 9.1 0.24 11.6 0.6 2.5 3 0 0 3 3 3 0 AAA domain CbiX PF01903.12 gi|410671953|ref|YP_006924324.1| - 4.8e-32 110.1 0.0 5.5e-32 110.0 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|410671953|ref|YP_006924324.1| - 1.6e-07 30.6 0.0 1.7e-07 30.5 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|410671953|ref|YP_006924324.1| - 0.075 11.9 0.0 0.086 11.7 0.0 1.1 1 0 0 1 1 1 0 Ferrochelatase FdhD-NarQ PF02634.10 gi|410671954|ref|YP_006924325.1| - 2.6e-60 203.8 0.3 3e-60 203.6 0.2 1.0 1 0 0 1 1 1 1 FdhD/NarQ family DUF3781 PF12636.2 gi|410671954|ref|YP_006924325.1| - 0.034 14.1 0.0 0.082 12.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3781) Molybdopterin PF00384.17 gi|410671955|ref|YP_006924326.1| - 2.7e-20 72.5 0.0 5.4e-20 71.5 0.0 1.5 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.17 gi|410671955|ref|YP_006924326.1| - 0.0039 16.9 0.0 1.7 8.3 0.0 3.1 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|410671955|ref|YP_006924326.1| - 0.03 13.8 0.1 0.14 11.6 0.0 2.0 2 0 0 2 2 2 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit Molydop_binding PF01568.16 gi|410671956|ref|YP_006924327.1| - 8.3e-12 44.8 0.0 1e-11 44.6 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain ADH_N PF08240.7 gi|410671956|ref|YP_006924327.1| - 0.031 14.0 0.5 0.052 13.3 0.4 1.4 1 0 0 1 1 1 0 Alcohol dehydrogenase GroES-like domain MDH PF02315.11 gi|410671956|ref|YP_006924327.1| - 0.047 13.6 0.0 0.061 13.2 0.0 1.2 1 0 0 1 1 1 0 Methanol dehydrogenase beta subunit MOSC PF03473.12 gi|410671956|ref|YP_006924327.1| - 0.054 12.9 0.0 0.069 12.6 0.0 1.2 1 0 0 1 1 1 0 MOSC domain v110 PF01639.12 gi|410671956|ref|YP_006924327.1| - 0.095 12.2 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Viral family 110 GXGXG PF01493.14 gi|410671957|ref|YP_006924328.1| - 3.8e-42 143.5 23.1 5.5e-42 143.0 16.0 1.2 1 0 0 1 1 1 1 GXGXG motif Amidohydro_3 PF07969.6 gi|410671958|ref|YP_006924329.1| - 1.2e-64 219.0 0.0 1.4e-64 218.7 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|410671958|ref|YP_006924329.1| - 1e-10 41.2 0.3 8.9e-10 38.2 0.0 2.6 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|410671958|ref|YP_006924329.1| - 0.00017 21.7 0.4 0.0056 16.7 0.0 2.3 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|410671958|ref|YP_006924329.1| - 0.012 15.2 0.1 4.8 6.7 0.0 2.5 2 0 0 2 2 2 0 Amidohydrolase family Fer4 PF00037.22 gi|410671959|ref|YP_006924330.1| - 2.1e-46 153.7 82.4 5.9e-08 31.9 5.0 7.7 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_7 PF12838.2 gi|410671959|ref|YP_006924330.1| - 2e-33 114.5 63.5 5.1e-11 42.7 4.5 4.8 4 2 2 6 6 6 5 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410671959|ref|YP_006924330.1| - 2e-31 108.0 60.6 1.2e-09 38.2 4.6 5.0 4 1 1 5 5 5 5 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410671959|ref|YP_006924330.1| - 9.5e-28 94.8 80.3 1.2e-05 24.9 1.5 7.7 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_16 PF13484.1 gi|410671959|ref|YP_006924330.1| - 2.2e-27 95.5 53.4 4.5e-09 36.9 3.1 5.6 5 0 0 5 5 5 5 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|410671959|ref|YP_006924330.1| - 3.6e-25 87.4 63.1 8.1e-07 28.7 6.5 6.2 3 2 4 7 7 7 7 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|410671959|ref|YP_006924330.1| - 2.7e-23 81.7 55.0 2.3e-09 37.1 2.6 5.0 3 1 2 5 5 5 5 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410671959|ref|YP_006924330.1| - 3.9e-22 77.8 69.4 1.9e-06 27.6 8.2 5.5 2 2 4 6 6 6 6 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410671959|ref|YP_006924330.1| - 1.1e-19 69.0 75.9 0.00012 21.7 2.3 7.6 8 0 0 8 8 7 6 4Fe-4S binding domain Fer4_18 PF13746.1 gi|410671959|ref|YP_006924330.1| - 9.2e-17 61.2 51.8 0.00094 19.5 0.1 7.2 7 0 0 7 7 7 7 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410671959|ref|YP_006924330.1| - 9.3e-17 61.1 52.1 6.8e-07 29.5 1.7 5.7 3 2 3 6 6 6 6 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410671959|ref|YP_006924330.1| - 3.8e-11 42.3 78.9 0.0048 17.1 1.7 7.5 8 0 0 8 8 7 5 4Fe-4S binding domain Fer4_3 PF12798.2 gi|410671959|ref|YP_006924330.1| - 4.1e-11 42.5 100.9 0.0049 17.3 4.6 8.2 8 1 0 8 8 8 6 4Fe-4S binding domain Fer4_15 PF13459.1 gi|410671959|ref|YP_006924330.1| - 1.4e-07 31.9 71.5 0.023 15.2 1.2 8.1 5 2 0 5 5 4 4 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|410671959|ref|YP_006924330.1| - 0.00015 22.1 75.3 0.37 11.1 2.5 7.9 7 1 0 7 7 7 5 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|410671959|ref|YP_006924330.1| - 0.012 15.4 44.6 0.34 10.8 12.6 5.1 2 2 2 4 4 4 0 4Fe-4S dicluster domain DUF1638 PF07796.6 gi|410671960|ref|YP_006924331.1| - 0.0058 16.2 0.0 0.0082 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) PY_rept_46 PF09689.5 gi|410671960|ref|YP_006924331.1| - 0.021 15.1 0.6 0.046 14.0 0.4 1.6 1 0 0 1 1 1 0 Plasmodium yoelii repeat (PY_rept_46) Desulfoferrod_N PF06397.7 gi|410671961|ref|YP_006924332.1| - 0.073 12.4 11.8 0.44 9.9 8.2 2.1 1 1 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain DNA_RNApol_7kD PF03604.8 gi|410671961|ref|YP_006924332.1| - 0.14 11.6 0.9 0.14 11.6 0.6 2.6 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc-ribbons_6 PF07191.7 gi|410671961|ref|YP_006924332.1| - 0.68 9.7 7.6 0.84 9.4 5.3 1.2 1 0 0 1 1 1 0 zinc-ribbons DZR PF12773.2 gi|410671961|ref|YP_006924332.1| - 0.91 9.3 9.9 1.1 9.1 6.8 1.2 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|410671961|ref|YP_006924332.1| - 4.9 6.8 8.0 5.2 6.7 5.6 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family GHMP_kinases_N PF00288.21 gi|410671962|ref|YP_006924333.1| - 1.3e-10 41.2 2.0 2.4e-10 40.3 0.7 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|410671962|ref|YP_006924333.1| - 0.00051 20.1 0.1 0.0019 18.3 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal CM_2 PF01817.16 gi|410671963|ref|YP_006924334.1| - 1e-15 57.5 5.8 1.2e-15 57.3 4.1 1.0 1 0 0 1 1 1 1 Chorismate mutase type II CENP-H PF05837.7 gi|410671963|ref|YP_006924334.1| - 0.021 14.9 2.5 0.025 14.7 1.7 1.1 1 0 0 1 1 1 0 Centromere protein H (CENP-H) DivIC PF04977.10 gi|410671963|ref|YP_006924334.1| - 0.08 12.4 0.5 0.14 11.6 0.2 1.5 1 1 0 1 1 1 0 Septum formation initiator AIRC PF00731.15 gi|410671964|ref|YP_006924335.1| - 6.9e-43 145.5 4.6 8e-43 145.2 3.2 1.0 1 0 0 1 1 1 1 AIR carboxylase Fe-ADH_2 PF13685.1 gi|410671964|ref|YP_006924335.1| - 0.024 13.9 0.3 0.028 13.7 0.2 1.1 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase Response_reg PF00072.19 gi|410671965|ref|YP_006924336.1| - 6.1e-23 80.9 0.1 1.4e-22 79.8 0.1 1.6 1 0 0 1 1 1 1 Response regulator receiver domain V4R PF02830.13 gi|410671965|ref|YP_006924336.1| - 0.053 13.3 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 V4R domain Desmo_N PF06771.6 gi|410671965|ref|YP_006924336.1| - 0.13 12.1 1.3 0.26 11.2 0.9 1.5 1 0 0 1 1 1 0 Viral Desmoplakin N-terminus KaiC PF06745.8 gi|410671966|ref|YP_006924337.1| - 4.7e-45 153.4 0.4 1.2e-44 152.1 0.3 1.6 1 1 0 1 1 1 1 KaiC GvpD PF07088.6 gi|410671966|ref|YP_006924337.1| - 6.8e-06 24.6 0.1 6.2e-05 21.5 0.1 2.0 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.10 gi|410671966|ref|YP_006924337.1| - 1e-05 24.5 0.1 0.00014 20.8 0.0 2.0 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain RecA PF00154.16 gi|410671966|ref|YP_006924337.1| - 1.2e-05 24.5 0.0 2e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|410671966|ref|YP_006924337.1| - 2.6e-05 23.7 0.3 8.8e-05 21.9 0.2 2.0 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|410671966|ref|YP_006924337.1| - 0.00083 18.4 0.1 0.0018 17.3 0.0 1.6 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|410671966|ref|YP_006924337.1| - 0.0019 18.3 0.3 0.057 13.5 0.2 2.3 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|410671966|ref|YP_006924337.1| - 0.0036 16.7 0.5 0.066 12.6 0.0 2.4 2 1 1 3 3 3 1 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|410671966|ref|YP_006924337.1| - 0.014 15.0 0.3 4.3 7.0 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_19 PF13245.1 gi|410671966|ref|YP_006924337.1| - 0.016 14.9 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|410671966|ref|YP_006924337.1| - 0.026 14.4 0.1 0.42 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain Zot PF05707.7 gi|410671966|ref|YP_006924337.1| - 0.032 13.6 0.0 0.16 11.4 0.0 1.9 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_16 PF13191.1 gi|410671966|ref|YP_006924337.1| - 0.063 13.2 0.2 0.15 12.0 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain ResIII PF04851.10 gi|410671966|ref|YP_006924337.1| - 0.12 12.1 0.1 0.33 10.7 0.1 1.8 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Zeta_toxin PF06414.7 gi|410671966|ref|YP_006924337.1| - 0.16 11.0 0.7 1.8 7.5 0.1 2.3 3 0 0 3 3 3 0 Zeta toxin AAA_17 PF13207.1 gi|410671966|ref|YP_006924337.1| - 2.3 9.0 6.4 2.1 9.2 0.4 2.6 2 1 0 2 2 2 0 AAA domain POR_N PF01855.14 gi|410671967|ref|YP_006924338.1| - 1.2e-59 201.6 0.0 2e-59 200.8 0.0 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|410671967|ref|YP_006924338.1| - 6.8e-34 117.2 0.0 1.4e-33 116.2 0.0 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.15 gi|410671967|ref|YP_006924338.1| - 1.1e-06 28.5 0.0 2.5e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|410671967|ref|YP_006924338.1| - 2.2e-06 27.2 1.5 3.8e-06 26.5 1.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|410671968|ref|YP_006924339.1| - 1.3e-26 93.0 0.0 2e-26 92.3 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|410671968|ref|YP_006924339.1| - 2.3e-23 81.8 0.0 3.6e-23 81.2 0.0 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Exonuc_VII_S PF02609.11 gi|410671968|ref|YP_006924339.1| - 0.14 11.9 0.0 0.3 10.8 0.0 1.5 1 0 0 1 1 1 0 Exonuclease VII small subunit Methyltransf_26 PF13659.1 gi|410671969|ref|YP_006924340.1| - 9.5e-15 54.6 0.0 1.5e-14 54.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|410671969|ref|YP_006924340.1| - 1.3e-12 47.4 0.0 1.8e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|410671969|ref|YP_006924340.1| - 9.3e-10 38.2 0.0 1.3e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410671969|ref|YP_006924340.1| - 2.9e-08 34.2 0.0 5.7e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|410671969|ref|YP_006924340.1| - 1.1e-06 28.4 0.0 9.9e-06 25.3 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|410671969|ref|YP_006924340.1| - 1.3e-06 27.8 0.0 3.5e-06 26.5 0.0 1.6 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW Methyltransf_11 PF08241.7 gi|410671969|ref|YP_006924340.1| - 0.00049 20.5 0.0 0.014 15.9 0.0 2.7 2 1 1 3 3 3 1 Methyltransferase domain UPF0146 PF03686.8 gi|410671969|ref|YP_006924340.1| - 0.0017 18.1 0.1 0.0034 17.2 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) RrnaAD PF00398.15 gi|410671969|ref|YP_006924340.1| - 0.0017 17.4 0.0 0.003 16.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.7 gi|410671969|ref|YP_006924340.1| - 0.0021 18.4 0.0 0.014 15.8 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain PCMT PF01135.14 gi|410671969|ref|YP_006924340.1| - 0.0054 16.2 0.0 0.011 15.2 0.0 1.6 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_24 PF13578.1 gi|410671969|ref|YP_006924340.1| - 0.011 16.6 0.0 0.069 13.9 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|410671969|ref|YP_006924340.1| - 0.021 15.1 0.0 0.063 13.6 0.0 1.8 2 1 0 2 2 2 0 Methyltransferase domain Eco57I PF07669.6 gi|410671969|ref|YP_006924340.1| - 0.075 13.3 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Eco57I restriction-modification methylase Methyltransf_16 PF10294.4 gi|410671969|ref|YP_006924340.1| - 0.089 12.2 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase RrnaAD PF00398.15 gi|410671970|ref|YP_006924341.1| - 5.2e-58 196.1 0.0 6.7e-58 195.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|410671970|ref|YP_006924341.1| - 4.8e-08 33.0 0.0 7.2e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410671970|ref|YP_006924341.1| - 6.1e-08 33.2 0.0 1.1e-07 32.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|410671970|ref|YP_006924341.1| - 1.3e-05 24.8 0.0 2.4e-05 23.9 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|410671970|ref|YP_006924341.1| - 0.00056 19.3 0.0 0.00082 18.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|410671970|ref|YP_006924341.1| - 0.00082 19.8 0.0 0.0019 18.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|410671970|ref|YP_006924341.1| - 0.0049 16.5 0.0 0.0067 16.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|410671970|ref|YP_006924341.1| - 0.0056 16.2 0.0 0.0096 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|410671970|ref|YP_006924341.1| - 0.01 16.1 0.0 0.035 14.4 0.0 1.9 1 1 1 2 2 2 0 Methyltransferase domain CMAS PF02353.15 gi|410671970|ref|YP_006924341.1| - 0.013 14.5 0.0 0.022 13.8 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_PK PF05891.7 gi|410671970|ref|YP_006924341.1| - 0.041 13.1 0.0 0.065 12.5 0.0 1.3 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase DUF655 PF04919.7 gi|410671971|ref|YP_006924342.1| - 7.7e-68 227.7 0.1 8.7e-68 227.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|410671971|ref|YP_006924342.1| - 9.1e-05 22.3 0.1 0.00023 21.0 0.0 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|410671971|ref|YP_006924342.1| - 0.00033 20.6 0.0 0.00054 19.9 0.0 1.3 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|410671971|ref|YP_006924342.1| - 0.1 12.7 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain RNA_pol_Rpb4 PF03874.11 gi|410671972|ref|YP_006924343.1| - 1.5e-15 57.2 0.9 1.9e-15 56.8 0.6 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 Sucrose_synth PF00862.14 gi|410671972|ref|YP_006924343.1| - 0.038 11.9 0.1 0.04 11.8 0.1 1.0 1 0 0 1 1 1 0 Sucrose synthase DUF1515 PF07439.6 gi|410671972|ref|YP_006924343.1| - 0.042 13.6 0.1 0.059 13.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) DUF3702 PF12486.3 gi|410671972|ref|YP_006924343.1| - 0.086 12.5 0.1 0.83 9.3 0.1 2.0 1 1 1 2 2 2 0 ImpA domain protein RUN PF02759.14 gi|410671972|ref|YP_006924343.1| - 0.11 12.2 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 RUN domain Ribosomal_L21e PF01157.13 gi|410671973|ref|YP_006924344.1| - 1.8e-29 101.4 0.1 1.9e-29 101.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.12 gi|410671974|ref|YP_006924345.1| - 1.8e-10 40.8 0.1 1.1e-09 38.2 0.0 2.1 2 0 0 2 2 2 1 THUMP domain FYVE PF01363.16 gi|410671974|ref|YP_006924345.1| - 0.014 15.2 0.2 0.086 12.7 0.1 2.1 2 0 0 2 2 2 0 FYVE zinc finger Methyltrn_RNA_2 PF04013.7 gi|410671975|ref|YP_006924346.1| - 1.6e-66 223.7 0.0 1.7e-66 223.5 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase SAMP PF05924.6 gi|410671975|ref|YP_006924346.1| - 0.09 11.9 1.1 0.21 10.7 0.7 1.6 1 0 0 1 1 1 0 SAMP Motif DEAD PF00270.24 gi|410671976|ref|YP_006924347.1| - 6.9e-48 162.3 2.9 1e-47 161.7 0.8 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|410671976|ref|YP_006924347.1| - 1.4e-23 82.5 0.2 4.9e-23 80.7 0.1 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|410671976|ref|YP_006924347.1| - 0.0048 16.7 0.0 0.011 15.5 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_RecD PF05127.9 gi|410671976|ref|YP_006924347.1| - 0.011 15.3 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 Helicase CMS1 PF14617.1 gi|410671976|ref|YP_006924347.1| - 0.014 14.4 0.0 0.032 13.2 0.0 1.5 1 0 0 1 1 1 0 U3-containing 90S pre-ribosomal complex subunit PyrI PF01948.13 gi|410671976|ref|YP_006924347.1| - 0.27 11.2 3.4 1.2 9.1 0.2 3.5 3 1 0 3 3 3 0 Aspartate carbamoyltransferase regulatory chain, allosteric domain Phos_pyr_kin PF08543.7 gi|410671977|ref|YP_006924348.1| - 6.7e-80 267.8 6.0 9.1e-80 267.3 4.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|410671977|ref|YP_006924348.1| - 1.3e-61 206.9 0.1 2.4e-61 206.0 0.1 1.4 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|410671977|ref|YP_006924348.1| - 1.8e-12 47.0 0.7 2.6e-12 46.4 0.5 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase SNAPc_SNAP43 PF09808.4 gi|410671978|ref|YP_006924349.1| - 0.093 12.3 0.3 0.093 12.3 0.2 1.0 1 0 0 1 1 1 0 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 LSM PF01423.17 gi|410671979|ref|YP_006924350.1| - 4.8e-22 77.2 0.2 5.2e-22 77.1 0.1 1.0 1 0 0 1 1 1 1 LSM domain GATase_6 PF13522.1 gi|410671980|ref|YP_006924351.1| - 1.8e-25 89.4 0.0 7.8e-25 87.3 0.0 2.0 3 0 0 3 3 3 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|410671980|ref|YP_006924351.1| - 2.1e-25 88.8 0.0 1.2e-24 86.3 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|410671980|ref|YP_006924351.1| - 3.5e-24 85.1 0.0 2.5e-17 62.6 0.0 3.0 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|410671980|ref|YP_006924351.1| - 8.6e-13 48.1 1.2 1.5e-12 47.3 0.3 1.8 2 0 0 2 2 2 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|410671980|ref|YP_006924351.1| - 1.1e-10 40.7 0.0 1.3e-09 37.1 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferases class-II PAS_3 PF08447.6 gi|410671981|ref|YP_006924352.1| - 7.3e-21 74.0 0.0 2.4e-18 65.9 0.0 2.8 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.21 gi|410671981|ref|YP_006924352.1| - 7.7e-21 73.8 0.1 2.5e-20 72.2 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|410671981|ref|YP_006924352.1| - 1.6e-14 54.1 0.5 2.1e-09 37.6 0.3 2.9 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|410671981|ref|YP_006924352.1| - 8.2e-10 38.4 0.3 0.00099 18.8 0.0 4.1 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.1 gi|410671981|ref|YP_006924352.1| - 1.1e-07 31.4 0.2 0.00012 21.7 0.0 3.2 2 0 0 2 2 2 2 PAS domain HisKA PF00512.20 gi|410671981|ref|YP_006924352.1| - 3.8e-06 26.7 0.0 1e-05 25.4 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|410671981|ref|YP_006924352.1| - 1.2e-05 25.3 0.0 0.034 14.1 0.0 2.5 2 0 0 2 2 2 2 PAS fold GAF_3 PF13492.1 gi|410671981|ref|YP_006924352.1| - 2.3e-05 24.5 0.0 0.00013 22.0 0.0 2.2 2 0 0 2 2 2 1 GAF domain HATPase_c_5 PF14501.1 gi|410671981|ref|YP_006924352.1| - 0.019 14.6 0.0 0.077 12.7 0.0 2.0 1 0 0 1 1 1 0 GHKL domain DUF1072 PF06380.6 gi|410671982|ref|YP_006924353.1| - 0.12 12.1 0.2 0.22 11.2 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1072) Phage_integrase PF00589.17 gi|410671983|ref|YP_006924354.1| - 3.5e-14 52.8 0.7 6.6e-14 51.9 0.1 1.7 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|410671983|ref|YP_006924354.1| - 0.00071 19.8 5.1 0.0025 18.1 1.2 2.8 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain zf-ribbon_3 PF13248.1 gi|410671983|ref|YP_006924354.1| - 0.0012 18.0 1.8 0.0012 18.0 1.3 1.8 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|410671983|ref|YP_006924354.1| - 0.02 14.6 0.4 0.02 14.6 0.3 1.6 2 0 0 2 2 2 0 Double zinc ribbon DegQ PF08181.6 gi|410671983|ref|YP_006924354.1| - 0.042 13.5 0.6 2 8.2 0.1 3.3 3 0 0 3 3 3 0 DegQ (SacQ) family DUF3987 PF13148.1 gi|410671986|ref|YP_006924357.1| - 6.1e-22 77.7 0.1 2.6e-17 62.4 0.0 3.0 3 0 0 3 3 3 2 Protein of unknown function (DUF3987) D5_N PF08706.6 gi|410671986|ref|YP_006924357.1| - 0.019 15.0 0.0 0.045 13.8 0.0 1.5 1 0 0 1 1 1 0 D5 N terminal like UDG PF03167.14 gi|410671987|ref|YP_006924358.1| - 7.4e-10 38.4 0.0 2.2e-09 36.9 0.0 1.7 2 1 0 2 2 2 1 Uracil DNA glycosylase superfamily Phage_Treg PF04761.7 gi|410671987|ref|YP_006924358.1| - 0.016 14.9 0.1 4.1 7.2 0.0 3.3 3 0 0 3 3 3 0 Lactococcus bacteriophage putative transcription regulator DUF4357 PF14267.1 gi|410671988|ref|YP_006924359.1| - 2e-20 72.1 0.1 3.8e-20 71.2 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4357) GIY-YIG PF01541.19 gi|410671988|ref|YP_006924359.1| - 3.6e-06 27.2 0.2 7.8e-06 26.1 0.2 1.6 1 0 0 1 1 1 1 GIY-YIG catalytic domain DUF1473 PF07341.6 gi|410671988|ref|YP_006924359.1| - 0.12 11.9 0.3 0.43 10.1 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1473) TFIIS_C PF01096.13 gi|410671989|ref|YP_006924360.1| - 0.012 15.2 7.9 0.074 12.6 2.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|410671989|ref|YP_006924360.1| - 0.03 14.1 1.6 0.046 13.5 1.1 1.3 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|410671989|ref|YP_006924360.1| - 0.056 13.4 3.6 0.89 9.5 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Stc1 PF12898.2 gi|410671989|ref|YP_006924360.1| - 0.056 13.5 1.6 0.055 13.5 1.1 1.0 1 0 0 1 1 1 0 Stc1 domain zinc_ribbon_5 PF13719.1 gi|410671989|ref|YP_006924360.1| - 0.24 10.9 8.4 1.1 8.8 1.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|410671989|ref|YP_006924360.1| - 0.33 10.6 7.4 4.1 7.1 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain C1_4 PF07975.7 gi|410671989|ref|YP_006924360.1| - 0.82 9.7 4.8 8.2 6.5 3.5 1.9 1 1 1 2 2 2 0 TFIIH C1-like domain TrmB PF01978.14 gi|410671991|ref|YP_006924362.1| - 0.0027 17.3 0.2 0.0049 16.5 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF1495 PF07381.6 gi|410671991|ref|YP_006924362.1| - 0.028 14.0 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_24 PF13412.1 gi|410671991|ref|YP_006924362.1| - 0.028 13.8 0.0 0.048 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Phage_rep_org_N PF09681.5 gi|410671992|ref|YP_006924363.1| - 0.047 13.2 0.3 3 7.4 0.0 2.4 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) DKNYY PF13644.1 gi|410671993|ref|YP_006924364.1| - 0.045 14.0 2.8 0.53 10.5 0.1 2.5 2 1 0 2 2 2 0 DKNYY family Citrus_P18 PF05520.6 gi|410671993|ref|YP_006924364.1| - 0.094 12.2 0.0 0.21 11.0 0.0 1.6 1 0 0 1 1 1 0 Citrus tristeza virus P18 protein N6_Mtase PF02384.11 gi|410671994|ref|YP_006924365.1| - 7.2e-53 179.6 0.1 1.3e-52 178.8 0.1 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|410671994|ref|YP_006924365.1| - 6.5e-12 46.0 0.9 6.5e-12 46.0 0.6 2.0 2 0 0 2 2 2 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|410671994|ref|YP_006924365.1| - 2.2e-08 34.1 0.0 4.6e-08 33.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|410671994|ref|YP_006924365.1| - 4.3e-05 23.1 0.0 7.7e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|410671994|ref|YP_006924365.1| - 0.00059 19.2 0.0 0.003 16.9 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase small domain AAA_22 PF13401.1 gi|410671994|ref|YP_006924365.1| - 0.0008 19.5 0.0 0.033 14.3 0.0 2.7 2 1 0 2 2 2 1 AAA domain DUF416 PF04222.7 gi|410671994|ref|YP_006924365.1| - 0.092 11.8 2.7 0.19 10.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF416) Methylase_S PF01420.14 gi|410671995|ref|YP_006924366.1| - 9.5e-29 100.5 2.7 1.1e-28 100.2 1.8 1.1 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain WD-3 PF09765.4 gi|410671995|ref|YP_006924366.1| - 0.15 11.3 0.9 0.17 11.1 0.1 1.4 2 0 0 2 2 2 0 WD-repeat region ResIII PF04851.10 gi|410671996|ref|YP_006924367.1| - 1e-27 97.1 0.1 2.3e-27 96.0 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit EcoEI_R_C PF08463.5 gi|410671996|ref|YP_006924367.1| - 1.8e-16 60.4 0.4 4.6e-16 59.1 0.1 1.9 2 0 0 2 2 2 1 EcoEI R protein C-terminal HSDR_N_2 PF13588.1 gi|410671996|ref|YP_006924367.1| - 8.5e-09 35.2 0.0 1.9e-08 34.0 0.0 1.7 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N PF04313.9 gi|410671996|ref|YP_006924367.1| - 1.5e-06 28.1 0.8 0.0018 18.0 0.1 3.1 2 1 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) DEAD PF00270.24 gi|410671996|ref|YP_006924367.1| - 2.7e-06 26.9 0.0 6.2e-06 25.8 0.0 1.6 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|410671996|ref|YP_006924367.1| - 4.1e-06 26.5 0.1 9.7e-06 25.3 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain N6_Mtase PF02384.11 gi|410671997|ref|YP_006924368.1| - 5.7e-29 101.1 0.0 2.4e-27 95.8 0.0 2.3 1 1 0 1 1 1 1 N-6 DNA Methylase UPF0020 PF01170.13 gi|410671997|ref|YP_006924368.1| - 3.5e-06 26.7 0.0 1.3e-05 24.8 0.0 1.9 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|410671997|ref|YP_006924368.1| - 1.7e-05 24.8 0.0 3.7e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|410671997|ref|YP_006924368.1| - 0.0035 16.9 0.0 0.011 15.2 0.0 2.0 1 0 0 1 1 1 1 Methyltransferase domain AAA PF00004.24 gi|410672000|ref|YP_006924371.1| - 1.4e-39 135.3 0.3 5.9e-39 133.2 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|410672000|ref|YP_006924371.1| - 1.1e-07 31.9 0.1 5.6e-07 29.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|410672000|ref|YP_006924371.1| - 1.2e-06 27.5 0.0 4.1e-06 25.7 0.0 1.7 1 1 1 2 2 2 1 TIP49 C-terminus AAA_17 PF13207.1 gi|410672000|ref|YP_006924371.1| - 2.4e-06 28.3 0.1 1.7e-05 25.6 0.0 2.4 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|410672000|ref|YP_006924371.1| - 4.2e-06 25.9 0.0 5e-05 22.4 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|410672000|ref|YP_006924371.1| - 1.2e-05 25.4 1.4 0.0004 20.5 0.2 2.6 2 1 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|410672000|ref|YP_006924371.1| - 2.6e-05 23.6 0.0 4.4e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.1 gi|410672000|ref|YP_006924371.1| - 0.0002 21.3 0.1 0.002 18.1 0.1 2.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|410672000|ref|YP_006924371.1| - 0.00021 21.0 0.0 0.0015 18.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|410672000|ref|YP_006924371.1| - 0.00066 19.5 0.0 0.0018 18.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain Bac_DnaA PF00308.13 gi|410672000|ref|YP_006924371.1| - 0.00087 19.0 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial dnaA protein AAA_28 PF13521.1 gi|410672000|ref|YP_006924371.1| - 0.0026 17.7 0.0 0.0064 16.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|410672000|ref|YP_006924371.1| - 0.0027 17.1 2.4 0.057 12.8 0.6 2.6 2 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|410672000|ref|YP_006924371.1| - 0.0043 16.7 0.1 0.019 14.6 0.0 2.0 1 1 1 2 2 2 1 NACHT domain DUF815 PF05673.8 gi|410672000|ref|YP_006924371.1| - 0.0045 15.9 0.0 0.01 14.8 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|410672000|ref|YP_006924371.1| - 0.0053 16.2 0.0 0.015 14.7 0.0 1.7 1 1 1 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|410672000|ref|YP_006924371.1| - 0.0073 15.4 0.0 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|410672000|ref|YP_006924371.1| - 0.0086 16.2 0.0 0.02 15.0 0.0 1.7 1 0 0 1 1 1 1 RNA helicase AAA_18 PF13238.1 gi|410672000|ref|YP_006924371.1| - 0.024 14.9 0.0 0.071 13.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|410672000|ref|YP_006924371.1| - 0.026 14.8 0.1 0.083 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|410672000|ref|YP_006924371.1| - 0.028 13.9 0.0 0.051 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.12 gi|410672000|ref|YP_006924371.1| - 0.031 13.1 0.1 0.055 12.3 0.1 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_10 PF12846.2 gi|410672000|ref|YP_006924371.1| - 0.042 13.2 0.7 0.13 11.6 0.5 2.1 1 1 0 1 1 1 0 AAA-like domain T2SE PF00437.15 gi|410672000|ref|YP_006924371.1| - 0.043 12.7 0.0 0.068 12.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein KaiC PF06745.8 gi|410672000|ref|YP_006924371.1| - 0.045 12.8 0.1 1.4 7.9 0.0 2.5 3 0 0 3 3 3 0 KaiC AAA_14 PF13173.1 gi|410672000|ref|YP_006924371.1| - 0.05 13.5 0.0 0.086 12.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|410672000|ref|YP_006924371.1| - 0.067 12.8 0.1 2.1 8.0 0.0 2.4 1 1 1 2 2 2 0 Archaeal ATPase IPT PF01745.11 gi|410672000|ref|YP_006924371.1| - 0.068 12.3 0.0 0.14 11.3 0.0 1.5 1 0 0 1 1 1 0 Isopentenyl transferase Lactamase_B_2 PF12706.2 gi|410672002|ref|YP_006924373.1| - 1.1e-33 116.4 0.1 1.4e-33 116.0 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|410672002|ref|YP_006924373.1| - 2.6e-15 56.5 0.1 1.8e-13 50.5 0.1 2.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|410672002|ref|YP_006924373.1| - 0.0014 18.0 0.0 0.0027 17.1 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease Ribosomal_S8e PF01201.17 gi|410672003|ref|YP_006924374.1| - 9.1e-32 109.9 8.9 1e-31 109.8 6.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e AsnC_trans_reg PF01037.16 gi|410672004|ref|YP_006924375.1| - 9.1e-15 54.1 0.1 1.6e-14 53.3 0.1 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|410672004|ref|YP_006924375.1| - 1.6e-10 40.2 0.3 9.9e-10 37.6 0.2 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|410672004|ref|YP_006924375.1| - 1.1e-08 34.4 0.4 2.4e-08 33.3 0.3 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TFIIE_alpha PF02002.12 gi|410672004|ref|YP_006924375.1| - 0.00033 20.1 1.9 0.0004 19.8 0.5 1.6 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_20 PF12840.2 gi|410672004|ref|YP_006924375.1| - 0.00054 19.7 0.1 0.00093 18.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|410672004|ref|YP_006924375.1| - 0.0057 16.1 0.3 0.011 15.2 0.2 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain LPP20 PF02169.11 gi|410672004|ref|YP_006924375.1| - 0.032 14.3 0.1 0.061 13.4 0.0 1.5 2 0 0 2 2 1 0 LPP20 lipoprotein HTH_Crp_2 PF13545.1 gi|410672004|ref|YP_006924375.1| - 0.037 13.8 0.0 5.3 6.9 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|410672004|ref|YP_006924375.1| - 0.048 13.2 0.0 0.09 12.3 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|410672004|ref|YP_006924375.1| - 0.052 13.1 0.1 5.1 6.6 0.0 2.2 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_27 PF13463.1 gi|410672004|ref|YP_006924375.1| - 0.056 13.7 0.2 0.2 12.0 0.0 1.9 3 0 0 3 3 2 0 Winged helix DNA-binding domain HTH_9 PF08221.6 gi|410672004|ref|YP_006924375.1| - 0.059 13.2 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_11 PF08279.7 gi|410672004|ref|YP_006924375.1| - 0.072 12.7 0.4 0.15 11.7 0.1 1.7 2 0 0 2 2 2 0 HTH domain DUF2250 PF10007.4 gi|410672004|ref|YP_006924375.1| - 0.079 12.8 0.1 0.15 12.0 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|410672004|ref|YP_006924375.1| - 0.086 12.9 0.1 0.23 11.5 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator NUDIX_4 PF14815.1 gi|410672004|ref|YP_006924375.1| - 0.13 11.7 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 NUDIX domain HTH_12 PF08461.5 gi|410672004|ref|YP_006924375.1| - 0.19 11.4 1.4 0.35 10.6 0.3 1.9 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain Aminotran_1_2 PF00155.16 gi|410672005|ref|YP_006924376.1| - 2.2e-68 230.8 0.0 2.5e-68 230.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|410672005|ref|YP_006924376.1| - 8.1e-14 51.4 0.0 1.2e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|410672005|ref|YP_006924376.1| - 1e-07 31.0 0.0 1.6e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|410672005|ref|YP_006924376.1| - 2.5e-06 26.0 0.0 3.7e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|410672005|ref|YP_006924376.1| - 8.7e-05 21.8 0.0 0.00014 21.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.15 gi|410672005|ref|YP_006924376.1| - 0.12 10.9 0.0 0.15 10.5 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain HATPase_c PF02518.21 gi|410672006|ref|YP_006924377.1| - 7.8e-33 112.5 0.1 2.4e-32 110.9 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|410672006|ref|YP_006924377.1| - 1.2e-31 109.1 0.1 3.7e-16 59.3 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|410672006|ref|YP_006924377.1| - 1.8e-25 88.9 0.0 2.2e-14 53.1 0.0 3.7 3 0 0 3 3 3 3 PAS fold HisKA PF00512.20 gi|410672006|ref|YP_006924377.1| - 7.1e-19 67.5 0.0 1.9e-18 66.2 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|410672006|ref|YP_006924377.1| - 7.7e-19 67.7 0.0 1e-08 35.1 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|410672006|ref|YP_006924377.1| - 2.9e-14 52.3 0.0 6.6e-05 22.6 0.0 3.8 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|410672006|ref|YP_006924377.1| - 5.2e-10 39.2 0.0 3.8e-07 30.1 0.0 2.8 2 0 0 2 2 2 2 PAS fold HATPase_c_5 PF14501.1 gi|410672006|ref|YP_006924377.1| - 1.7e-06 27.6 0.7 1.2e-05 24.8 0.0 2.9 4 0 0 4 4 4 1 GHKL domain HATPase_c_3 PF13589.1 gi|410672006|ref|YP_006924377.1| - 0.023 14.3 0.0 0.063 12.9 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|410672006|ref|YP_006924377.1| - 0.049 13.4 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain SBP_bac_3 PF00497.15 gi|410672007|ref|YP_006924378.1| - 1.2e-47 162.0 0.3 6.5e-26 90.9 0.1 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 Cache_2 PF08269.6 gi|410672007|ref|YP_006924378.1| - 0.00058 19.7 0.0 0.0015 18.4 0.0 1.7 1 0 0 1 1 1 1 Cache domain SPDY PF03771.11 gi|410672007|ref|YP_006924378.1| - 0.012 15.0 0.0 3.4 7.2 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF317) SNARE_assoc PF09335.6 gi|410672008|ref|YP_006924379.1| - 4.6e-06 26.8 10.1 3.9e-05 23.8 7.1 2.2 1 1 0 1 1 1 1 SNARE associated Golgi protein LRV_FeS PF05484.6 gi|410672008|ref|YP_006924379.1| - 0.027 14.0 0.0 0.044 13.3 0.0 1.2 1 0 0 1 1 1 0 LRV protein FeS4 cluster UPF0118 PF01594.11 gi|410672009|ref|YP_006924380.1| - 1.4e-40 139.2 47.7 1.8e-40 138.9 33.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 UPF0118 PF01594.11 gi|410672010|ref|YP_006924381.1| - 1.8e-46 158.6 50.2 2.4e-46 158.2 34.8 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 RDD PF06271.7 gi|410672012|ref|YP_006924383.1| - 8e-29 100.2 12.4 1e-28 99.9 8.6 1.1 1 0 0 1 1 1 1 RDD family zinc_ribbon_2 PF13240.1 gi|410672012|ref|YP_006924383.1| - 0.00017 20.9 2.4 0.00025 20.4 1.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|410672012|ref|YP_006924383.1| - 0.00069 18.7 1.2 0.0011 18.1 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|410672012|ref|YP_006924383.1| - 0.0015 18.2 1.0 0.0024 17.6 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.13 gi|410672012|ref|YP_006924383.1| - 0.026 13.6 2.4 0.052 12.6 0.3 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others NfeD PF01957.13 gi|410672012|ref|YP_006924383.1| - 0.043 13.9 3.6 0.08 13.0 2.5 1.4 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding zf-FPG_IleRS PF06827.9 gi|410672012|ref|YP_006924383.1| - 0.14 11.8 0.2 13 5.5 0.0 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-DHHC PF01529.15 gi|410672012|ref|YP_006924383.1| - 0.71 9.2 9.0 1.4 8.3 0.3 2.3 1 1 1 2 2 2 0 DHHC palmitoyltransferase FtsX PF02687.16 gi|410672012|ref|YP_006924383.1| - 4.8 6.9 13.1 1.6 8.5 7.3 1.6 2 0 0 2 2 2 0 FtsX-like permease family TrmB PF01978.14 gi|410672013|ref|YP_006924384.1| - 5.8e-18 64.3 0.2 8e-18 63.9 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|410672013|ref|YP_006924384.1| - 2.1e-05 24.0 0.4 3.1e-05 23.4 0.3 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|410672013|ref|YP_006924384.1| - 4.6e-05 22.8 0.0 5.8e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.2 gi|410672013|ref|YP_006924384.1| - 0.00014 21.4 0.1 0.00023 20.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|410672013|ref|YP_006924384.1| - 0.00014 21.3 0.1 0.00021 20.8 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|410672013|ref|YP_006924384.1| - 0.00016 21.9 0.0 0.00032 20.9 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|410672013|ref|YP_006924384.1| - 0.00018 21.2 0.1 0.0003 20.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Replic_Relax PF13814.1 gi|410672013|ref|YP_006924384.1| - 0.0006 19.7 0.0 0.00079 19.3 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation MarR PF01047.17 gi|410672013|ref|YP_006924384.1| - 0.00073 19.1 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|410672013|ref|YP_006924384.1| - 0.004 16.9 0.1 0.0068 16.1 0.1 1.5 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|410672013|ref|YP_006924384.1| - 0.0062 16.1 0.0 0.01 15.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|410672013|ref|YP_006924384.1| - 0.0065 15.9 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|410672013|ref|YP_006924384.1| - 0.013 14.9 0.1 0.022 14.1 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_24 PF13412.1 gi|410672013|ref|YP_006924384.1| - 0.02 14.3 0.1 0.031 13.6 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF977 PF06163.6 gi|410672013|ref|YP_006924384.1| - 0.11 12.2 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) DUF739 PF05339.6 gi|410672014|ref|YP_006924385.1| - 0.065 13.0 0.1 0.083 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF739) KaiC PF06745.8 gi|410672015|ref|YP_006924386.1| - 7.8e-49 165.8 2.6 8.9e-49 165.6 1.8 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|410672015|ref|YP_006924386.1| - 3.1e-09 35.7 0.3 3.9e-09 35.3 0.2 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.1 gi|410672015|ref|YP_006924386.1| - 5e-06 26.0 0.0 7.8e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|410672015|ref|YP_006924386.1| - 0.00013 22.1 2.4 0.00074 19.7 1.6 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|410672015|ref|YP_006924386.1| - 0.034 13.1 0.0 0.046 12.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Rad51 PF08423.6 gi|410672015|ref|YP_006924386.1| - 0.04 12.8 3.0 0.5 9.2 2.1 2.3 1 1 0 1 1 1 0 Rad51 DnaB_C PF03796.10 gi|410672015|ref|YP_006924386.1| - 0.051 12.4 0.0 0.072 11.9 0.0 1.4 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_22 PF13401.1 gi|410672015|ref|YP_006924386.1| - 0.053 13.6 0.4 0.15 12.1 0.3 1.8 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|410672015|ref|YP_006924386.1| - 0.054 12.9 0.0 0.088 12.2 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein MEDS PF14417.1 gi|410672015|ref|YP_006924386.1| - 0.084 11.9 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain NACHT PF05729.7 gi|410672015|ref|YP_006924386.1| - 0.15 11.6 0.3 0.6 9.7 0.2 1.9 1 1 0 1 1 1 0 NACHT domain PAXNEB PF05625.6 gi|410672015|ref|YP_006924386.1| - 0.37 9.5 3.3 0.47 9.2 0.3 1.9 1 1 1 2 2 2 0 PAXNEB protein HMG-CoA_red PF00368.13 gi|410672016|ref|YP_006924387.1| - 2.8e-145 483.7 1.4 3.2e-145 483.4 0.9 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Orthopox_35kD PF02250.10 gi|410672016|ref|YP_006924387.1| - 0.029 13.6 0.0 0.054 12.8 0.0 1.5 1 0 0 1 1 1 0 35kD major secreted virus protein Acyl_transf_2 PF02273.10 gi|410672016|ref|YP_006924387.1| - 0.054 12.5 0.0 0.084 11.8 0.0 1.2 1 0 0 1 1 1 0 Acyl transferase SprT-like PF10263.4 gi|410672017|ref|YP_006924388.1| - 0.085 12.5 0.1 0.088 12.4 0.0 1.1 1 0 0 1 1 1 0 SprT-like family RUN PF02759.14 gi|410672017|ref|YP_006924388.1| - 0.1 12.3 0.1 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 RUN domain Aconitase PF00330.15 gi|410672018|ref|YP_006924389.1| - 4.8e-90 302.2 1.1 5.1e-62 209.8 0.0 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) TrmB PF01978.14 gi|410672019|ref|YP_006924390.1| - 0.00069 19.2 0.1 0.0013 18.3 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF387 PF04079.11 gi|410672019|ref|YP_006924390.1| - 0.0046 16.3 0.1 0.0057 16.0 0.0 1.2 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) HD-ZIP_N PF04618.7 gi|410672019|ref|YP_006924390.1| - 0.13 12.8 0.1 0.21 12.1 0.0 1.4 1 1 0 1 1 1 0 HD-ZIP protein N terminus PAS_9 PF13426.1 gi|410672020|ref|YP_006924391.1| - 2e-70 233.7 0.3 1.2e-15 57.6 0.0 7.9 7 1 0 7 7 7 7 PAS domain PAS_4 PF08448.5 gi|410672020|ref|YP_006924391.1| - 2.5e-61 204.5 0.0 1.8e-11 44.0 0.0 8.3 8 1 0 8 8 8 7 PAS fold PAS PF00989.19 gi|410672020|ref|YP_006924391.1| - 1.2e-51 173.2 0.0 5.1e-12 45.5 0.0 7.9 7 0 0 7 7 7 7 PAS fold PAS_3 PF08447.6 gi|410672020|ref|YP_006924391.1| - 2e-50 168.8 0.3 3.5e-21 75.0 0.0 6.5 7 0 0 7 7 7 3 PAS fold Response_reg PF00072.19 gi|410672020|ref|YP_006924391.1| - 2.2e-44 150.0 0.9 3.1e-25 88.3 0.3 2.9 2 0 0 2 2 2 2 Response regulator receiver domain PAS_8 PF13188.1 gi|410672020|ref|YP_006924391.1| - 2e-35 119.4 0.0 2.9e-06 26.9 0.0 7.9 7 0 0 7 7 7 6 PAS domain HATPase_c PF02518.21 gi|410672020|ref|YP_006924391.1| - 7.4e-31 106.1 0.2 1.7e-30 104.9 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|410672020|ref|YP_006924391.1| - 1.4e-21 76.1 0.1 1.4e-21 76.1 0.1 3.0 3 0 0 3 3 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|410672020|ref|YP_006924391.1| - 2.6e-20 72.5 2.7 4.7e-10 39.4 0.0 5.9 6 0 0 6 6 6 3 PAS fold GAF_2 PF13185.1 gi|410672020|ref|YP_006924391.1| - 2.7e-17 63.6 0.0 7e-17 62.2 0.0 1.8 1 0 0 1 1 1 1 GAF domain Hpt PF01627.18 gi|410672020|ref|YP_006924391.1| - 4.1e-11 42.7 0.0 4.1e-11 42.7 0.0 2.5 3 0 0 3 3 2 1 Hpt domain PAS_10 PF13596.1 gi|410672020|ref|YP_006924391.1| - 5.2e-07 29.9 0.0 0.85 9.9 0.0 6.4 6 0 0 6 6 6 1 PAS domain GAF_3 PF13492.1 gi|410672020|ref|YP_006924391.1| - 0.0084 16.2 0.0 0.033 14.2 0.0 2.1 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|410672020|ref|YP_006924391.1| - 0.048 13.7 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 GAF domain FKBP_C PF00254.23 gi|410672021|ref|YP_006924392.1| - 6.2e-25 87.0 0.0 8.2e-25 86.6 0.0 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase tRNA_anti-codon PF01336.20 gi|410672022|ref|YP_006924393.1| - 8.5e-09 35.1 0.3 1.3e-08 34.5 0.2 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Pab87_oct PF13969.1 gi|410672022|ref|YP_006924393.1| - 0.056 13.5 0.3 0.26 11.3 0.0 2.1 2 1 1 3 3 3 0 Pab87 octamerisation domain BOF PF04076.8 gi|410672022|ref|YP_006924393.1| - 0.08 12.7 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 Bacterial OB fold (BOF) protein NTP_transferase PF00483.18 gi|410672023|ref|YP_006924394.1| - 3.1e-46 157.6 0.0 3.8e-46 157.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|410672023|ref|YP_006924394.1| - 5e-19 66.8 29.7 1e-07 31.1 0.9 5.4 1 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|410672023|ref|YP_006924394.1| - 5.1e-08 33.1 0.0 7.4e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|410672023|ref|YP_006924394.1| - 1.3e-06 27.8 27.0 2.3e-05 23.8 2.6 4.5 2 2 2 4 4 4 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.7 gi|410672023|ref|YP_006924394.1| - 1.3 7.4 6.2 0.72 8.3 0.8 2.3 1 1 1 3 3 3 0 L-fucokinase UPF0104 PF03706.8 gi|410672024|ref|YP_006924395.1| - 1.2e-41 142.9 23.7 1.5e-41 142.6 16.4 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Radical_SAM PF04055.16 gi|410672025|ref|YP_006924396.1| - 7.3e-18 65.2 0.0 1.4e-17 64.3 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.2 gi|410672025|ref|YP_006924396.1| - 0.00017 21.4 0.0 0.00074 19.4 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif PsbU PF06514.6 gi|410672025|ref|YP_006924396.1| - 0.018 14.8 0.0 0.29 11.0 0.0 2.8 3 0 0 3 3 3 0 Photosystem II 12 kDa extrinsic protein (PsbU) ILVD_EDD PF00920.16 gi|410672027|ref|YP_006924398.1| - 1.5e-217 723.1 3.6 1.7e-217 723.0 2.5 1.0 1 0 0 1 1 1 1 Dehydratase family Thymidylat_synt PF00303.14 gi|410672030|ref|YP_006924401.1| - 3.5e-14 52.4 0.2 4.1e-13 48.9 0.1 2.0 1 1 0 1 1 1 1 Thymidylate synthase Rad50_zn_hook PF04423.9 gi|410672030|ref|YP_006924401.1| - 0.08 12.4 8.0 4.6 6.7 0.0 3.5 3 0 0 3 3 3 0 Rad50 zinc hook motif PTA_PTB PF01515.14 gi|410672032|ref|YP_006924403.1| - 9.1e-05 21.6 0.0 0.027 13.5 0.1 2.3 1 1 1 2 2 2 2 Phosphate acetyl/butaryl transferase AAA PF00004.24 gi|410672033|ref|YP_006924404.1| - 1e-09 38.7 0.0 2.4e-09 37.4 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|410672033|ref|YP_006924404.1| - 1.7e-08 33.6 0.1 0.00022 20.0 0.0 2.3 1 1 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|410672033|ref|YP_006924404.1| - 2.9e-07 30.6 1.6 8.2e-05 22.7 0.1 3.8 3 2 0 3 3 3 1 AAA domain RuvB_N PF05496.7 gi|410672033|ref|YP_006924404.1| - 0.00035 19.7 0.0 0.001 18.1 0.0 1.8 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|410672033|ref|YP_006924404.1| - 0.00053 20.0 0.1 0.0018 18.3 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|410672033|ref|YP_006924404.1| - 0.00065 19.6 0.0 0.0014 18.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|410672033|ref|YP_006924404.1| - 0.0073 15.2 0.0 0.018 13.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) IstB_IS21 PF01695.12 gi|410672033|ref|YP_006924404.1| - 0.011 15.1 0.0 0.023 14.0 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.7 gi|410672033|ref|YP_006924404.1| - 0.027 14.1 0.1 0.34 10.5 0.0 2.3 1 1 1 2 2 2 0 NACHT domain Zeta_toxin PF06414.7 gi|410672033|ref|YP_006924404.1| - 0.04 13.0 0.0 0.082 11.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.1 gi|410672033|ref|YP_006924404.1| - 0.082 13.7 0.6 0.27 12.0 0.0 2.2 3 1 0 3 3 3 0 AAA domain AAA_5 PF07728.9 gi|410672033|ref|YP_006924404.1| - 0.1 12.3 0.0 0.29 10.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AsnC_trans_reg PF01037.16 gi|410672034|ref|YP_006924405.1| - 1.7e-10 40.4 0.2 1.8e-10 40.3 0.1 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|410672034|ref|YP_006924405.1| - 2.3e-05 24.0 0.0 2.6e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 GYD domain ACT_4 PF13291.1 gi|410672034|ref|YP_006924405.1| - 0.039 14.2 0.0 0.19 12.1 0.0 1.8 2 0 0 2 2 2 0 ACT domain Topo-VIb_trans PF09239.6 gi|410672035|ref|YP_006924406.1| - 6.4e-70 233.8 0.0 1.3e-69 232.8 0.0 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|410672035|ref|YP_006924406.1| - 4e-13 49.0 0.0 8.7e-13 47.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|410672035|ref|YP_006924406.1| - 2.9e-09 36.7 0.0 6.3e-09 35.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|410672035|ref|YP_006924406.1| - 0.0014 17.2 0.1 0.0056 15.2 0.0 1.9 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) HATPase_c_5 PF14501.1 gi|410672035|ref|YP_006924406.1| - 0.08 12.6 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 GHKL domain Dynamin_M PF01031.15 gi|410672035|ref|YP_006924406.1| - 0.11 11.2 0.2 0.19 10.4 0.1 1.2 1 0 0 1 1 1 0 Dynamin central region TP6A_N PF04406.9 gi|410672036|ref|YP_006924407.1| - 2.1e-19 68.9 0.1 3.7e-19 68.1 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase SAC3 PF12209.3 gi|410672036|ref|YP_006924407.1| - 0.12 12.5 0.1 0.67 10.1 0.0 2.2 2 0 0 2 2 2 0 Leucine permease transcriptional regulator helical domain TPR_11 PF13414.1 gi|410672037|ref|YP_006924408.1| - 6.2e-15 54.5 1.4 3.9e-10 39.2 0.1 2.2 1 1 2 3 3 3 2 TPR repeat TPR_1 PF00515.23 gi|410672037|ref|YP_006924408.1| - 6.9e-12 44.4 3.5 7.6e-06 25.3 0.1 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|410672037|ref|YP_006924408.1| - 1.9e-11 42.9 1.4 0.0011 18.7 0.1 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|410672037|ref|YP_006924408.1| - 1.9e-07 30.7 0.3 0.00026 20.9 0.0 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|410672037|ref|YP_006924408.1| - 2.9e-07 29.8 0.6 0.024 14.3 0.0 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|410672037|ref|YP_006924408.1| - 6.7e-07 29.1 0.0 1.4e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|410672037|ref|YP_006924408.1| - 1.6e-05 24.3 0.2 0.0055 16.4 0.0 2.9 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|410672037|ref|YP_006924408.1| - 5.4e-05 22.9 0.0 0.015 15.1 0.0 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|410672037|ref|YP_006924408.1| - 0.00012 21.8 0.6 0.0034 17.2 0.2 2.4 2 0 0 2 2 2 1 Fis1 C-terminal tetratricopeptide repeat TPR_19 PF14559.1 gi|410672037|ref|YP_006924408.1| - 0.00093 19.4 0.5 1.1 9.6 0.0 2.5 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|410672037|ref|YP_006924408.1| - 0.002 18.5 0.1 5.9 7.8 0.0 3.2 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|410672037|ref|YP_006924408.1| - 0.0052 17.4 0.1 1.1 10.0 0.0 2.2 1 1 2 3 3 3 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|410672037|ref|YP_006924408.1| - 0.024 14.7 0.1 0.064 13.3 0.0 1.7 1 0 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 3 DnaJ PF00226.26 gi|410672038|ref|YP_006924409.1| - 6.1e-26 89.9 0.7 8.6e-26 89.4 0.5 1.2 1 0 0 1 1 1 1 DnaJ domain TraG_N PF07916.6 gi|410672038|ref|YP_006924409.1| - 0.052 11.9 0.0 0.058 11.8 0.0 1.0 1 0 0 1 1 1 0 TraG-like protein, N-terminal region DUF912 PF06024.7 gi|410672038|ref|YP_006924409.1| - 0.14 12.1 0.1 0.14 12.1 0.1 2.1 2 1 1 3 3 3 0 Nucleopolyhedrovirus protein of unknown function (DUF912) FA_desaturase PF00487.19 gi|410672038|ref|YP_006924409.1| - 0.29 10.5 6.7 0.42 10.0 4.6 1.3 1 1 0 1 1 1 0 Fatty acid desaturase Ctr PF04145.10 gi|410672038|ref|YP_006924409.1| - 2.1 8.3 7.6 2.8 7.9 5.2 1.5 1 1 0 1 1 1 0 Ctr copper transporter family CutA1 PF03091.10 gi|410672039|ref|YP_006924410.1| - 1.2e-30 105.1 0.8 1.4e-30 104.9 0.6 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein PLDc_N PF13396.1 gi|410672040|ref|YP_006924411.1| - 0.022 14.3 3.2 0.38 10.4 0.3 2.3 2 0 0 2 2 2 0 Phospholipase_D-nuclease N-terminal CTP_transf_2 PF01467.21 gi|410672042|ref|YP_006924413.1| - 0.0002 21.4 0.0 0.0019 18.2 0.0 2.3 2 1 0 2 2 2 1 Cytidylyltransferase PTS_IIA PF02255.11 gi|410672042|ref|YP_006924413.1| - 0.57 10.0 4.8 0.39 10.6 0.1 2.6 3 0 0 3 3 3 0 PTS system, Lactose/Cellobiose specific IIA subunit Response_reg PF00072.19 gi|410672043|ref|YP_006924414.1| - 6.1e-26 90.6 0.1 6.8e-26 90.4 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DUF4097 PF13349.1 gi|410672044|ref|YP_006924415.1| - 0.073 12.6 0.4 0.16 11.5 0.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4097) Flavodoxin_2 PF02525.12 gi|410672045|ref|YP_006924416.1| - 3e-53 180.3 0.1 3.3e-53 180.1 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.10 gi|410672045|ref|YP_006924416.1| - 1.3e-15 57.2 0.0 5.3e-15 55.2 0.0 1.8 1 1 0 1 1 1 1 NADPH-dependent FMN reductase OCD_Mu_crystall PF02423.10 gi|410672046|ref|YP_006924417.1| - 2.5e-105 351.7 0.7 3.1e-105 351.4 0.5 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|410672046|ref|YP_006924417.1| - 0.00031 20.8 0.0 0.00054 20.0 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DNA_gyraseB PF00204.20 gi|410672047|ref|YP_006924418.1| - 1.5e-63 213.1 0.8 2.3e-63 212.5 0.5 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|410672047|ref|YP_006924418.1| - 6.1e-32 109.1 0.2 1.1e-31 108.3 0.1 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|410672047|ref|YP_006924418.1| - 1.1e-23 83.1 0.0 2.5e-23 81.9 0.0 1.7 1 0 0 1 1 1 1 Toprim domain HATPase_c PF02518.21 gi|410672047|ref|YP_006924418.1| - 1.8e-20 72.6 0.1 4e-20 71.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|410672047|ref|YP_006924418.1| - 3.7e-05 23.4 0.0 7.4e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_topoisoIV PF00521.15 gi|410672048|ref|YP_006924419.1| - 9.2e-157 522.2 1.8 1.3e-156 521.7 1.3 1.2 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|410672048|ref|YP_006924419.1| - 1.3e-66 219.6 15.9 1.5e-16 59.4 0.3 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller Med3 PF11593.3 gi|410672048|ref|YP_006924419.1| - 9.6 5.3 8.8 0.083 12.1 0.5 1.5 2 0 0 2 2 2 0 Mediator complex subunit 3 fungal SOR_SNZ PF01680.12 gi|410672049|ref|YP_006924420.1| - 2.4e-107 357.2 10.6 3.8e-107 356.5 7.4 1.3 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|410672049|ref|YP_006924420.1| - 1.4e-09 37.3 11.5 5.9e-07 28.8 1.1 2.5 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|410672049|ref|YP_006924420.1| - 0.0013 17.6 5.2 0.015 14.3 0.2 3.0 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.10 gi|410672049|ref|YP_006924420.1| - 0.0087 15.2 1.0 0.0087 15.2 0.7 2.3 2 0 0 2 2 2 1 Nitronate monooxygenase Dus PF01207.12 gi|410672049|ref|YP_006924420.1| - 0.01 14.7 1.8 1.1 8.0 0.1 2.4 2 1 0 2 2 2 0 Dihydrouridine synthase (Dus) IGPS PF00218.16 gi|410672049|ref|YP_006924420.1| - 0.017 14.1 0.1 0.17 10.9 0.0 2.2 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|410672049|ref|YP_006924420.1| - 0.032 13.4 0.8 0.14 11.4 0.0 2.3 3 0 0 3 3 3 0 Histidine biosynthesis protein SNO PF01174.14 gi|410672050|ref|YP_006924421.1| - 2.9e-54 183.5 0.0 3.3e-54 183.3 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|410672050|ref|YP_006924421.1| - 1.9e-10 40.5 0.1 3e-10 39.8 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|410672050|ref|YP_006924421.1| - 4e-08 32.9 0.0 1.7e-07 30.9 0.0 1.8 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|410672050|ref|YP_006924421.1| - 4.9e-05 22.8 0.0 7.2e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_S51 PF03575.12 gi|410672050|ref|YP_006924421.1| - 0.00021 21.0 0.0 0.00029 20.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DUF4066 PF13278.1 gi|410672050|ref|YP_006924421.1| - 0.0048 16.1 0.1 0.0091 15.2 0.0 1.5 2 0 0 2 2 2 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|410672050|ref|YP_006924421.1| - 0.056 12.8 0.1 0.57 9.5 0.1 2.5 1 1 0 1 1 1 0 Peptidase C26 Ribosomal_L27 PF01016.14 gi|410672050|ref|YP_006924421.1| - 0.12 12.1 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Ribosomal L27 protein Pyridox_oxidase PF01243.15 gi|410672051|ref|YP_006924422.1| - 3e-15 55.9 0.0 3.7e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.7 gi|410672051|ref|YP_006924422.1| - 0.072 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF447) CARDB PF07705.6 gi|410672053|ref|YP_006924424.1| - 0.02 14.9 0.0 7.1 6.7 0.0 2.3 2 0 0 2 2 2 0 CARDB Ribosomal_S6e PF01092.14 gi|410672054|ref|YP_006924425.1| - 1.6e-31 108.6 1.1 1.8e-31 108.4 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e GTP_EFTU PF00009.22 gi|410672055|ref|YP_006924426.1| - 4.8e-33 114.1 0.4 5.4e-32 110.7 0.1 2.6 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|410672055|ref|YP_006924426.1| - 2.2e-23 82.2 3.5 2.2e-23 82.2 2.4 2.4 3 0 0 3 3 3 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|410672055|ref|YP_006924426.1| - 1.1e-13 51.1 11.6 1.4e-11 44.3 0.1 3.3 3 0 0 3 3 3 2 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|410672055|ref|YP_006924426.1| - 5e-13 48.4 2.2 5e-13 48.4 1.5 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|410672055|ref|YP_006924426.1| - 2.5e-06 27.4 0.0 8.9e-06 25.6 0.0 2.0 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|410672055|ref|YP_006924426.1| - 0.0011 19.4 0.0 0.0031 17.9 0.0 1.8 1 0 0 1 1 1 1 Miro-like protein PduV-EutP PF10662.4 gi|410672055|ref|YP_006924426.1| - 0.01 15.3 1.8 0.53 9.7 0.0 3.5 4 0 0 4 4 4 0 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|410672055|ref|YP_006924426.1| - 0.027 14.1 0.1 0.078 12.6 0.1 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|410672055|ref|YP_006924426.1| - 0.028 13.9 0.0 0.091 12.2 0.0 1.9 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein cobW PF02492.14 gi|410672055|ref|YP_006924426.1| - 0.053 12.9 0.2 9.8 5.5 0.1 2.5 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NDK PF00334.14 gi|410672056|ref|YP_006924427.1| - 1.5e-55 186.6 0.1 1.7e-55 186.4 0.1 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.15 gi|410672057|ref|YP_006924428.1| - 8.4e-23 80.0 0.1 8.9e-23 79.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|410672057|ref|YP_006924428.1| - 1.6e-07 30.8 2.0 2.1e-07 30.4 1.4 1.1 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.8 gi|410672057|ref|YP_006924428.1| - 2.9e-06 27.0 0.6 3.8e-06 26.6 0.4 1.1 1 0 0 1 1 1 1 YHS domain zf-ribbon_3 PF13248.1 gi|410672057|ref|YP_006924428.1| - 0.014 14.6 0.1 0.026 13.7 0.1 1.5 1 1 0 1 1 1 0 zinc-ribbon domain DUF2116 PF09889.4 gi|410672057|ref|YP_006924428.1| - 0.062 13.1 0.1 0.47 10.3 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Arc_trans_TRASH PF08394.5 gi|410672057|ref|YP_006924428.1| - 0.069 13.3 0.2 0.17 12.0 0.2 1.7 1 1 0 1 1 1 0 Archaeal TRASH domain Ecl1 PF12855.2 gi|410672057|ref|YP_006924428.1| - 0.077 12.3 0.2 0.11 11.8 0.2 1.2 1 0 0 1 1 1 0 Life-span regulatory factor ICAM_N PF03921.9 gi|410672057|ref|YP_006924428.1| - 0.1 12.0 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Intercellular adhesion molecule (ICAM), N-terminal domain zf-C4_ClpX PF06689.8 gi|410672057|ref|YP_006924428.1| - 0.18 11.3 0.1 0.18 11.3 0.1 1.6 2 0 0 2 2 2 0 ClpX C4-type zinc finger DUF329 PF03884.9 gi|410672057|ref|YP_006924428.1| - 0.37 10.3 3.2 1.5 8.4 2.2 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF329) zinc_ribbon_2 PF13240.1 gi|410672057|ref|YP_006924428.1| - 0.48 9.9 0.1 0.48 9.9 0.1 2.0 2 1 0 2 2 2 0 zinc-ribbon domain Ribosomal_S28e PF01200.13 gi|410672058|ref|YP_006924429.1| - 8e-29 99.1 0.4 8.6e-29 99.0 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.21 gi|410672059|ref|YP_006924430.1| - 7e-25 86.3 1.0 8.1e-25 86.1 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DUF1525 PF07511.6 gi|410672059|ref|YP_006924430.1| - 0.061 13.3 0.0 0.092 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1525) DUF1269 PF06897.7 gi|410672059|ref|YP_006924430.1| - 0.13 12.3 1.5 3.9 7.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) Staphylcoagulse PF04022.7 gi|410672060|ref|YP_006924431.1| - 8 5.9 8.3 0.28 10.5 0.1 2.7 3 0 0 3 3 3 0 Staphylocoagulase repeat UPF0051 PF01458.12 gi|410672061|ref|YP_006924432.1| - 2.9e-55 187.2 0.6 3.9e-55 186.8 0.4 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|410672062|ref|YP_006924433.1| - 1.9e-18 67.0 0.0 2.8e-18 66.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410672062|ref|YP_006924433.1| - 1.5e-09 38.2 0.6 0.00042 20.3 0.1 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|410672062|ref|YP_006924433.1| - 0.01 15.3 0.1 0.022 14.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|410672062|ref|YP_006924433.1| - 0.027 14.7 0.1 0.055 13.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain LSM14 PF12701.2 gi|410672062|ref|YP_006924433.1| - 0.035 13.9 0.0 0.19 11.5 0.0 2.1 2 0 0 2 2 2 0 Scd6-like Sm domain SMC_N PF02463.14 gi|410672062|ref|YP_006924433.1| - 0.051 12.8 0.4 0.37 10.0 0.1 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|410672062|ref|YP_006924433.1| - 0.068 12.3 0.1 0.14 11.3 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|410672062|ref|YP_006924433.1| - 0.12 10.8 0.1 0.16 10.3 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|410672062|ref|YP_006924433.1| - 0.14 12.0 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|410672062|ref|YP_006924433.1| - 0.17 11.3 0.9 0.56 9.5 0.4 1.9 1 1 0 2 2 2 0 AAA-like domain HTH_45 PF14947.1 gi|410672063|ref|YP_006924434.1| - 2e-19 69.1 1.1 2.2e-19 69.0 0.8 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix Crp PF00325.15 gi|410672063|ref|YP_006924434.1| - 4.7e-05 22.7 0.5 0.0012 18.2 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_24 PF13412.1 gi|410672063|ref|YP_006924434.1| - 0.00032 20.0 0.3 0.0075 15.6 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MotA_activ PF09114.5 gi|410672063|ref|YP_006924434.1| - 0.0016 18.1 0.0 0.0017 18.0 0.0 1.1 1 0 0 1 1 1 1 Transcription factor MotA, activation domain DUF2774 PF11242.3 gi|410672063|ref|YP_006924434.1| - 0.0037 17.2 0.3 0.034 14.1 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2774) DUF2250 PF10007.4 gi|410672063|ref|YP_006924434.1| - 0.014 15.3 0.2 0.016 15.1 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.17 gi|410672063|ref|YP_006924434.1| - 0.021 14.5 0.1 0.039 13.6 0.0 1.5 2 0 0 2 2 2 0 MarR family DUF4364 PF14277.1 gi|410672063|ref|YP_006924434.1| - 0.027 14.0 0.2 0.027 14.0 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) RNA_pol_Rpc34 PF05158.7 gi|410672063|ref|YP_006924434.1| - 0.034 13.3 0.0 0.034 13.3 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit TrmB PF01978.14 gi|410672063|ref|YP_006924434.1| - 0.058 13.1 0.1 0.18 11.5 0.1 1.7 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|410672063|ref|YP_006924434.1| - 0.098 12.4 0.5 0.18 11.5 0.2 1.6 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain HTH_36 PF13730.1 gi|410672063|ref|YP_006924434.1| - 0.1 12.7 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|410672063|ref|YP_006924434.1| - 0.11 12.1 0.2 0.15 11.6 0.1 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|410672063|ref|YP_006924434.1| - 0.14 11.7 0.0 2.9 7.5 0.0 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain Sua5_yciO_yrdC PF01300.13 gi|410672067|ref|YP_006924438.1| - 2.8e-57 192.8 0.0 5.1e-57 192.0 0.0 1.4 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.8 gi|410672067|ref|YP_006924438.1| - 3.5e-29 101.4 0.0 5.1e-29 100.8 0.0 1.2 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding NurA PF09376.5 gi|410672067|ref|YP_006924438.1| - 0.0066 15.9 0.0 0.009 15.5 0.0 1.3 1 0 0 1 1 1 1 NurA domain PhaG_MnhG_YufB PF03334.9 gi|410672068|ref|YP_006924439.1| - 4.8e-27 93.8 12.7 5.9e-27 93.5 8.8 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF1418 PF07214.7 gi|410672068|ref|YP_006924439.1| - 0.0023 17.5 0.7 0.014 15.0 0.0 2.1 1 1 0 2 2 2 1 Protein of unknown function (DUF1418) Tetraspannin PF00335.15 gi|410672068|ref|YP_006924439.1| - 0.13 11.5 0.2 0.16 11.2 0.2 1.2 1 0 0 1 1 1 0 Tetraspanin family Nitrate_red_gam PF02665.9 gi|410672068|ref|YP_006924439.1| - 1.5 8.1 5.6 2.3 7.5 3.9 1.3 1 1 0 1 1 1 0 Nitrate reductase gamma subunit MrpF_PhaF PF04066.8 gi|410672069|ref|YP_006924440.1| - 1.7e-20 73.0 1.9 1.7e-20 73.0 1.3 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2108 PF09881.4 gi|410672069|ref|YP_006924440.1| - 9 6.2 7.9 30 4.5 5.4 1.9 1 1 0 1 1 1 0 Predicted membrane protein (DUF2108) MNHE PF01899.11 gi|410672070|ref|YP_006924441.1| - 8.1e-43 145.7 1.2 9.2e-43 145.5 0.8 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Oxidored_q1 PF00361.15 gi|410672071|ref|YP_006924442.1| - 2.3e-56 191.0 24.8 2.3e-56 191.0 17.2 2.5 3 1 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|410672071|ref|YP_006924442.1| - 0.0007 19.0 0.6 0.0007 19.0 0.4 3.5 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.19 gi|410672072|ref|YP_006924443.1| - 6.2e-29 99.4 3.5 7.1e-29 99.2 2.5 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MnhB PF04039.8 gi|410672073|ref|YP_006924444.1| - 1.5e-27 96.0 11.6 1.9e-27 95.8 8.0 1.0 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter YrhK PF14145.1 gi|410672073|ref|YP_006924444.1| - 1.3 8.7 5.9 8.5 6.1 4.1 2.4 1 1 0 1 1 1 0 YrhK-like protein Oxidored_q1 PF00361.15 gi|410672074|ref|YP_006924445.1| - 1.1e-68 231.3 22.5 1.1e-68 231.3 15.6 2.9 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4040 PF13244.1 gi|410672074|ref|YP_006924445.1| - 1.3e-18 66.7 8.8 1.3e-18 66.7 6.1 4.2 4 0 0 4 4 4 1 Domain of unknown function (DUF4040) Oxidored_q1_N PF00662.15 gi|410672074|ref|YP_006924445.1| - 6.8e-09 35.1 0.1 6.8e-09 35.1 0.1 3.1 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HAD_2 PF13419.1 gi|410672075|ref|YP_006924446.1| - 4.3e-26 92.2 0.0 5.1e-26 91.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|410672075|ref|YP_006924446.1| - 7.6e-09 36.2 0.0 1.3e-07 32.2 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|410672075|ref|YP_006924446.1| - 5.6e-06 25.9 0.0 2.2e-05 24.0 0.0 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like NT5C PF06941.7 gi|410672075|ref|YP_006924446.1| - 0.022 14.2 0.1 0.036 13.5 0.1 1.4 1 1 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Beta-Casp PF10996.3 gi|410672076|ref|YP_006924447.1| - 3.4e-36 123.9 0.0 9.3e-36 122.5 0.0 1.8 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|410672076|ref|YP_006924447.1| - 1.7e-24 86.5 0.2 3.6e-24 85.4 0.1 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|410672076|ref|YP_006924447.1| - 4e-13 48.9 0.2 2.1e-12 46.6 0.1 2.3 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|410672076|ref|YP_006924447.1| - 1.6e-09 37.5 0.1 3.4e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|410672076|ref|YP_006924447.1| - 2.3e-07 30.2 0.5 4e-06 26.2 0.1 2.7 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|410672076|ref|YP_006924447.1| - 5.8e-05 22.6 1.9 0.00084 18.9 0.5 2.6 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|410672076|ref|YP_006924447.1| - 8.1e-05 22.3 0.0 0.00018 21.2 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_4 PF13083.1 gi|410672076|ref|YP_006924447.1| - 0.00084 18.9 0.0 0.0018 17.8 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|410672076|ref|YP_006924447.1| - 0.024 14.2 0.8 0.093 12.4 0.5 2.1 2 0 0 2 2 2 0 KH domain DUF3489 PF11994.3 gi|410672076|ref|YP_006924447.1| - 0.1 12.5 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) Proteasome PF00227.21 gi|410672077|ref|YP_006924448.1| - 3.2e-56 189.6 1.9 3.7e-56 189.4 1.3 1.0 1 0 0 1 1 1 1 Proteasome subunit HD PF01966.17 gi|410672078|ref|YP_006924449.1| - 1e-14 54.6 1.9 1.5e-14 54.0 1.3 1.3 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|410672078|ref|YP_006924449.1| - 0.0074 15.5 0.1 0.025 13.8 0.0 1.8 1 1 0 1 1 1 1 HDOD domain NAD_binding_11 PF14833.1 gi|410672078|ref|YP_006924449.1| - 0.024 14.6 0.0 0.37 10.8 0.0 2.4 3 0 0 3 3 3 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TFIIE_alpha PF02002.12 gi|410672079|ref|YP_006924450.1| - 4.2e-18 64.7 0.2 5.8e-18 64.3 0.1 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit Rad50_zn_hook PF04423.9 gi|410672079|ref|YP_006924450.1| - 0.27 10.7 3.2 0.3 10.6 0.3 2.3 2 0 0 2 2 2 0 Rad50 zinc hook motif YdjO PF14169.1 gi|410672079|ref|YP_006924450.1| - 0.3 10.5 4.2 0.35 10.3 1.9 1.9 2 0 0 2 2 2 0 Cold-inducible protein YdjO ATP-grasp_3 PF02655.9 gi|410672080|ref|YP_006924451.1| - 3.9e-40 137.3 0.0 6e-40 136.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|410672080|ref|YP_006924451.1| - 2.6e-17 63.1 0.0 5.6e-17 62.0 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|410672080|ref|YP_006924451.1| - 5.1e-14 51.7 0.0 1.1e-13 50.6 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|410672080|ref|YP_006924451.1| - 3.3e-08 33.0 0.0 1.7e-07 30.7 0.0 2.0 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.1 gi|410672080|ref|YP_006924451.1| - 4.7e-05 22.6 0.0 0.0004 19.5 0.0 2.0 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp Dala_Dala_lig_C PF07478.8 gi|410672080|ref|YP_006924451.1| - 0.0072 15.7 0.0 0.088 12.1 0.0 2.1 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|410672080|ref|YP_006924451.1| - 0.11 11.9 0.0 0.25 10.7 0.0 1.7 1 1 0 1 1 1 0 RimK-like ATP-grasp domain NMD3 PF04981.8 gi|410672081|ref|YP_006924452.1| - 2.4e-57 193.7 0.2 3.1e-57 193.4 0.2 1.1 1 0 0 1 1 1 1 NMD3 family zinc_ribbon_2 PF13240.1 gi|410672081|ref|YP_006924452.1| - 0.043 13.3 3.3 1.7 8.2 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|410672081|ref|YP_006924452.1| - 0.043 13.3 2.4 6.8 6.2 0.2 2.7 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.1 gi|410672081|ref|YP_006924452.1| - 0.22 10.7 6.9 1.3 8.3 0.1 2.4 1 1 1 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|410672081|ref|YP_006924452.1| - 0.33 10.5 2.6 13 5.4 0.5 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-IS66 PF13005.2 gi|410672081|ref|YP_006924452.1| - 0.49 10.4 2.4 29 4.7 0.1 2.8 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|410672081|ref|YP_006924452.1| - 0.75 9.7 3.5 14 5.6 0.0 3.2 3 0 0 3 3 3 0 Zinc ribbon domain Auto_anti-p27 PF06677.7 gi|410672081|ref|YP_006924452.1| - 0.84 9.4 7.6 1.7 8.5 0.1 3.0 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Nudix_N_2 PF14803.1 gi|410672081|ref|YP_006924452.1| - 1.4 8.6 9.1 6.3 6.5 0.1 4.1 4 0 0 4 4 4 0 Nudix N-terminal GFA PF04828.9 gi|410672081|ref|YP_006924452.1| - 3.3 7.7 6.5 15 5.6 0.1 3.1 3 1 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme DUF362 PF04015.7 gi|410672082|ref|YP_006924453.1| - 5.5e-24 84.7 0.0 7.7e-23 81.0 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|410672082|ref|YP_006924453.1| - 1.4e-08 34.0 5.6 0.00014 21.2 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|410672082|ref|YP_006924453.1| - 2.9e-06 26.8 4.5 0.00048 19.8 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|410672082|ref|YP_006924453.1| - 2.4e-05 24.6 16.7 0.0014 18.9 5.1 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410672082|ref|YP_006924453.1| - 0.0002 21.0 8.7 0.0007 19.3 2.3 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|410672082|ref|YP_006924453.1| - 0.00047 20.3 4.8 0.0024 18.1 3.6 1.9 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410672082|ref|YP_006924453.1| - 0.00061 19.5 7.1 0.0012 18.6 4.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410672082|ref|YP_006924453.1| - 0.0016 18.2 4.5 0.0037 17.0 3.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|410672082|ref|YP_006924453.1| - 0.028 14.2 1.2 0.054 13.3 0.8 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410672082|ref|YP_006924453.1| - 0.066 13.9 4.1 0.74 10.5 1.3 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|410672082|ref|YP_006924453.1| - 0.092 13.1 10.2 0.42 11.0 2.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|410672082|ref|YP_006924453.1| - 2.5 8.7 7.3 1.1 9.9 1.3 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|410672082|ref|YP_006924453.1| - 3.6 8.3 6.6 1.6 9.4 1.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Propep_M14 PF02244.11 gi|410672085|ref|YP_006924456.1| - 0.013 15.0 0.2 4.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Carboxypeptidase activation peptide CdhD PF03599.11 gi|410672086|ref|YP_006924457.1| - 1.7e-156 520.6 0.1 1.9e-156 520.3 0.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.8 gi|410672086|ref|YP_006924457.1| - 4.9e-15 54.7 0.7 9.7e-15 53.8 0.5 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster Pterin_bind PF00809.17 gi|410672086|ref|YP_006924457.1| - 0.00091 18.6 0.1 0.0058 16.0 0.0 2.0 1 1 0 1 1 1 1 Pterin binding enzyme CdhD PF03599.11 gi|410672087|ref|YP_006924458.1| - 2.8e-88 296.0 1.8 2.1e-80 270.0 0.1 3.1 1 1 2 3 3 3 3 CO dehydrogenase/acetyl-CoA synthase delta subunit CbiA PF01656.18 gi|410672088|ref|YP_006924459.1| - 1.4e-31 109.4 0.3 1.9e-31 109.0 0.2 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|410672088|ref|YP_006924459.1| - 3.9e-13 49.2 0.8 1.2e-12 47.6 0.5 1.7 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|410672088|ref|YP_006924459.1| - 1.9e-09 37.0 2.5 3e-09 36.3 0.3 2.2 1 1 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|410672088|ref|YP_006924459.1| - 2.7e-07 30.6 0.1 2.5e-06 27.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain Toprim_4 PF13662.1 gi|410672088|ref|YP_006924459.1| - 0.00022 21.1 0.1 0.012 15.6 0.0 2.4 2 0 0 2 2 2 1 Toprim domain AAA_22 PF13401.1 gi|410672088|ref|YP_006924459.1| - 0.00058 20.0 0.2 0.0043 17.1 0.1 2.3 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|410672088|ref|YP_006924459.1| - 0.00074 19.2 0.1 0.0033 17.1 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|410672088|ref|YP_006924459.1| - 0.0011 18.7 0.7 0.0024 17.5 0.1 1.9 2 0 0 2 2 1 1 Part of AAA domain Toprim PF01751.17 gi|410672088|ref|YP_006924459.1| - 0.0017 18.2 0.2 1.4 8.9 0.0 2.4 1 1 1 2 2 2 2 Toprim domain AAA_26 PF13500.1 gi|410672088|ref|YP_006924459.1| - 0.0027 17.3 1.9 0.85 9.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain DUF87 PF01935.12 gi|410672088|ref|YP_006924459.1| - 0.0035 17.1 0.2 0.0035 17.1 0.1 2.3 3 1 0 3 3 2 1 Domain of unknown function DUF87 KaiC PF06745.8 gi|410672088|ref|YP_006924459.1| - 0.0082 15.2 0.1 0.023 13.8 0.0 1.8 1 1 1 2 2 2 1 KaiC DUF3798 PF12683.2 gi|410672088|ref|YP_006924459.1| - 0.0086 15.1 0.1 0.48 9.4 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3798) Miro PF08477.8 gi|410672088|ref|YP_006924459.1| - 0.011 16.2 0.1 0.49 10.8 0.0 2.2 2 0 0 2 2 2 0 Miro-like protein CoA_binding_3 PF13727.1 gi|410672088|ref|YP_006924459.1| - 0.011 15.5 0.0 0.71 9.6 0.0 2.2 2 0 0 2 2 2 0 CoA-binding domain AAA_16 PF13191.1 gi|410672088|ref|YP_006924459.1| - 0.015 15.3 0.0 0.057 13.4 0.0 1.9 2 1 0 2 2 2 0 AAA ATPase domain T2SE PF00437.15 gi|410672088|ref|YP_006924459.1| - 0.021 13.7 1.1 0.028 13.2 0.2 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein MipZ PF09140.6 gi|410672088|ref|YP_006924459.1| - 0.035 13.1 1.1 0.29 10.1 0.2 2.2 1 1 0 2 2 2 0 ATPase MipZ YhjQ PF06564.7 gi|410672088|ref|YP_006924459.1| - 0.073 12.4 0.0 0.24 10.7 0.0 2.0 1 1 0 1 1 1 0 YhjQ protein NTPase_1 PF03266.10 gi|410672088|ref|YP_006924459.1| - 0.086 12.5 3.5 2.5 7.7 0.1 2.2 2 0 0 2 2 2 0 NTPase Toprim_2 PF13155.1 gi|410672088|ref|YP_006924459.1| - 0.097 13.0 0.0 19 5.6 0.0 2.3 2 0 0 2 2 2 0 Toprim-like AAA_17 PF13207.1 gi|410672088|ref|YP_006924459.1| - 0.1 13.4 4.8 0.79 10.5 2.7 2.5 1 1 1 2 2 2 0 AAA domain SRP54 PF00448.17 gi|410672088|ref|YP_006924459.1| - 0.11 11.9 2.0 0.43 9.9 0.2 2.2 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain CoA_binding PF02629.14 gi|410672088|ref|YP_006924459.1| - 0.11 13.0 0.1 12 6.5 0.0 2.3 2 0 0 2 2 2 0 CoA binding domain ResIII PF04851.10 gi|410672088|ref|YP_006924459.1| - 0.15 11.9 0.0 0.33 10.7 0.0 1.7 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit PP2C_2 PF13672.1 gi|410672088|ref|YP_006924459.1| - 0.16 11.3 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein phosphatase 2C Zeta_toxin PF06414.7 gi|410672088|ref|YP_006924459.1| - 0.28 10.2 1.8 0.26 10.3 0.2 1.6 2 0 0 2 2 2 0 Zeta toxin AAA_25 PF13481.1 gi|410672088|ref|YP_006924459.1| - 1.8 7.9 4.3 3.4 7.0 0.6 2.7 2 2 0 2 2 2 0 AAA domain CdhC PF03598.10 gi|410672089|ref|YP_006924460.1| - 1.5e-185 616.6 0.1 1.8e-185 616.3 0.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CO_dh PF02552.11 gi|410672090|ref|YP_006924461.1| - 2.2e-30 105.3 0.1 2.8e-30 105.0 0.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.17 gi|410672090|ref|YP_006924461.1| - 0.0027 17.4 0.2 0.0036 17.0 0.2 1.4 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Mfa2 PF08842.5 gi|410672090|ref|YP_006924461.1| - 0.059 12.7 0.0 0.082 12.2 0.0 1.2 1 0 0 1 1 1 0 Fimbrillin-A associated anchor proteins Mfa1 and Mfa2 Prismane PF03063.15 gi|410672091|ref|YP_006924462.1| - 4.5e-109 365.1 5.9 1.6e-93 313.8 0.1 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_9 PF13187.1 gi|410672091|ref|YP_006924462.1| - 4e-06 27.0 12.2 4e-06 27.0 8.4 2.5 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|410672091|ref|YP_006924462.1| - 4.4e-06 26.6 12.8 4.4e-06 26.6 8.8 2.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410672091|ref|YP_006924462.1| - 8e-06 26.5 6.1 0.0085 16.8 0.1 3.5 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|410672091|ref|YP_006924462.1| - 8.5e-06 26.1 9.2 0.013 15.8 0.1 3.1 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410672091|ref|YP_006924462.1| - 2.8e-05 24.4 10.6 2.8e-05 24.4 7.3 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410672091|ref|YP_006924462.1| - 0.00013 22.2 17.4 0.0022 18.3 0.2 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|410672091|ref|YP_006924462.1| - 0.00023 20.6 3.7 0.00023 20.6 2.6 3.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|410672091|ref|YP_006924462.1| - 0.00023 20.9 9.8 0.00023 20.9 6.8 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410672091|ref|YP_006924462.1| - 0.00044 19.9 20.3 0.001 18.8 9.9 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410672091|ref|YP_006924462.1| - 0.0051 16.6 3.2 0.0051 16.6 2.2 3.3 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|410672091|ref|YP_006924462.1| - 0.0052 17.0 1.7 0.0052 17.0 1.2 4.0 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|410672091|ref|YP_006924462.1| - 0.0064 16.3 3.1 0.0064 16.3 2.1 3.5 3 0 0 3 3 2 2 4Fe-4S binding domain DUF4287 PF14117.1 gi|410672091|ref|YP_006924462.1| - 0.02 14.5 0.3 0.051 13.2 0.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4287) Ribosomal_S2 PF00318.15 gi|410672091|ref|YP_006924462.1| - 0.18 11.0 0.0 0.38 9.9 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein S2 Rhomboid PF01694.17 gi|410672092|ref|YP_006924463.1| - 8.7e-32 110.1 17.3 8.7e-32 110.1 12.0 1.4 1 1 0 1 1 1 1 Rhomboid family zf-AN1 PF01428.11 gi|410672092|ref|YP_006924463.1| - 2.3e-13 49.7 7.4 3.5e-13 49.1 5.1 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|410672092|ref|YP_006924463.1| - 6.7e-05 23.1 1.1 6.7e-05 23.1 0.7 2.4 1 1 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) FYVE PF01363.16 gi|410672092|ref|YP_006924463.1| - 0.19 11.6 6.6 0.37 10.7 4.5 1.4 1 1 0 1 1 1 0 FYVE zinc finger zf-C2HC5 PF06221.8 gi|410672092|ref|YP_006924463.1| - 0.49 10.1 5.5 1.1 9.1 3.8 1.5 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-CCHC PF00098.18 gi|410672092|ref|YP_006924463.1| - 0.54 10.2 7.7 0.29 11.1 0.5 2.3 2 0 0 2 2 2 0 Zinc knuckle NYN PF01936.13 gi|410672094|ref|YP_006924465.1| - 6.6e-25 88.1 0.0 8.9e-25 87.6 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF460 PF04312.8 gi|410672094|ref|YP_006924465.1| - 0.043 13.3 0.0 1.4 8.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF460) iPGM_N PF06415.8 gi|410672094|ref|YP_006924465.1| - 0.058 12.7 0.0 0.08 12.2 0.0 1.3 1 0 0 1 1 1 0 BPG-independent PGAM N-terminus (iPGM_N) DUF4479 PF14794.1 gi|410672094|ref|YP_006924465.1| - 0.086 12.3 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) Spherulin4 PF12138.3 gi|410672094|ref|YP_006924465.1| - 0.093 12.1 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Spherulation-specific family 4 HMGL-like PF00682.14 gi|410672095|ref|YP_006924466.1| - 5.4e-71 238.9 2.7 8e-71 238.4 1.9 1.3 1 0 0 1 1 1 1 HMGL-like DUF561 PF04481.7 gi|410672095|ref|YP_006924466.1| - 0.00091 18.2 0.5 1.2 8.0 0.1 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF561) AP_endonuc_2 PF01261.19 gi|410672095|ref|YP_006924466.1| - 0.073 12.3 0.0 0.17 11.1 0.0 1.7 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel NAD_kinase PF01513.16 gi|410672096|ref|YP_006924467.1| - 5.7e-57 192.6 0.6 6.8e-57 192.4 0.4 1.0 1 0 0 1 1 1 1 ATP-NAD kinase PK_C PF02887.11 gi|410672096|ref|YP_006924467.1| - 0.022 14.3 0.7 3.5 7.2 0.0 3.3 3 1 1 4 4 4 0 Pyruvate kinase, alpha/beta domain DAGK_cat PF00781.19 gi|410672096|ref|YP_006924467.1| - 0.061 12.7 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Inositol_P PF00459.20 gi|410672097|ref|YP_006924468.1| - 3.7e-40 137.9 0.0 4.4e-40 137.7 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|410672097|ref|YP_006924468.1| - 1.9e-05 23.7 0.0 0.00038 19.3 0.0 2.2 2 0 0 2 2 2 1 Fructose-1-6-bisphosphatase DUF4265 PF14085.1 gi|410672097|ref|YP_006924468.1| - 0.15 11.8 0.0 0.76 9.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4265) Gp_dh_C PF02800.15 gi|410672098|ref|YP_006924469.1| - 2.4e-24 85.5 0.0 3.4e-24 85.0 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|410672098|ref|YP_006924469.1| - 2e-23 83.0 0.3 4.9e-23 81.7 0.2 1.7 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|410672098|ref|YP_006924469.1| - 5.5e-11 42.4 0.6 1.1e-10 41.5 0.3 1.5 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|410672098|ref|YP_006924469.1| - 0.00012 22.4 0.1 0.00038 20.8 0.0 1.9 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|410672098|ref|YP_006924469.1| - 0.00016 20.8 0.1 0.002 17.2 0.0 2.2 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|410672098|ref|YP_006924469.1| - 0.00038 20.7 0.0 0.00075 19.7 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|410672098|ref|YP_006924469.1| - 0.00042 20.8 0.1 0.0013 19.1 0.0 1.9 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.7 gi|410672098|ref|YP_006924469.1| - 0.001 18.4 0.4 0.012 14.9 0.1 2.5 2 1 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|410672098|ref|YP_006924469.1| - 0.0096 15.9 0.0 0.022 14.7 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain RNA_bind_2 PF10133.4 gi|410672099|ref|YP_006924470.1| - 3.2e-20 71.9 2.0 3.5e-20 71.7 1.4 1.0 1 0 0 1 1 1 1 Predicted RNA-binding protein DUF89 PF01937.14 gi|410672100|ref|YP_006924471.1| - 7.4e-52 176.2 0.0 9.1e-52 176.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 Na_Ca_ex PF01699.19 gi|410672101|ref|YP_006924472.1| - 2.8e-55 185.7 24.7 4.9e-29 100.7 5.7 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein MORN_2 PF07661.8 gi|410672102|ref|YP_006924473.1| - 0.0085 16.0 0.0 0.045 13.7 0.0 2.2 1 1 1 2 2 2 1 MORN repeat variant DUF3332 PF11810.3 gi|410672102|ref|YP_006924473.1| - 0.028 14.1 4.1 2.4 7.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3332) SBP_bac_5 PF00496.17 gi|410672105|ref|YP_006924476.1| - 1.3e-66 225.0 4.1 1.6e-66 224.7 2.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Brevenin PF03032.10 gi|410672105|ref|YP_006924476.1| - 0.018 14.8 0.2 0.031 14.1 0.2 1.4 1 0 0 1 1 1 0 Brevenin/esculentin/gaegurin/rugosin family BPD_transp_1 PF00528.17 gi|410672106|ref|YP_006924477.1| - 3.1e-41 140.9 12.1 3.1e-41 140.9 8.4 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|410672107|ref|YP_006924478.1| - 3.6e-22 78.7 8.3 3.6e-22 78.7 5.8 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|410672108|ref|YP_006924479.1| - 4.8e-22 78.7 0.1 7.2e-22 78.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|410672108|ref|YP_006924479.1| - 2.7e-13 50.0 0.2 6.1e-13 48.9 0.1 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|410672108|ref|YP_006924479.1| - 2e-08 34.5 0.0 6.8e-06 26.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|410672108|ref|YP_006924479.1| - 0.00054 19.9 0.1 0.0013 18.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|410672108|ref|YP_006924479.1| - 0.00077 18.6 0.1 0.0012 18.0 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|410672108|ref|YP_006924479.1| - 0.00097 18.6 0.1 0.066 12.6 0.0 2.0 1 1 1 2 2 2 1 AAA-like domain SMC_N PF02463.14 gi|410672108|ref|YP_006924479.1| - 0.0013 18.0 0.4 0.012 14.8 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|410672108|ref|YP_006924479.1| - 0.0019 18.3 0.2 0.013 15.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|410672108|ref|YP_006924479.1| - 0.0085 15.6 0.2 0.016 14.7 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|410672108|ref|YP_006924479.1| - 0.018 14.4 0.0 0.3 10.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|410672108|ref|YP_006924479.1| - 0.021 14.7 0.0 0.044 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|410672108|ref|YP_006924479.1| - 0.036 13.8 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain IstB_IS21 PF01695.12 gi|410672108|ref|YP_006924479.1| - 0.073 12.4 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA PF00004.24 gi|410672108|ref|YP_006924479.1| - 0.13 12.4 0.0 0.45 10.7 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|410672108|ref|YP_006924479.1| - 0.14 11.3 0.1 0.37 9.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF258 DUF2075 PF09848.4 gi|410672108|ref|YP_006924479.1| - 0.17 10.8 0.0 0.21 10.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF87 PF01935.12 gi|410672108|ref|YP_006924479.1| - 0.36 10.5 1.8 0.59 9.9 0.6 1.8 1 1 1 2 2 2 0 Domain of unknown function DUF87 ABC_tran PF00005.22 gi|410672109|ref|YP_006924480.1| - 3.3e-25 88.9 0.0 4.6e-25 88.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.1 gi|410672109|ref|YP_006924480.1| - 4.4e-06 26.8 0.1 8.4e-06 25.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|410672109|ref|YP_006924480.1| - 4.5e-06 26.8 2.0 0.0056 16.6 0.2 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|410672109|ref|YP_006924480.1| - 0.00076 18.7 1.0 0.022 13.9 0.0 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|410672109|ref|YP_006924480.1| - 0.00096 19.4 0.0 0.0029 17.8 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|410672109|ref|YP_006924480.1| - 0.001 19.8 0.1 0.0014 19.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|410672109|ref|YP_006924480.1| - 0.0013 17.9 0.1 0.0023 17.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|410672109|ref|YP_006924480.1| - 0.0017 17.8 1.9 0.006 16.0 0.2 2.2 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|410672109|ref|YP_006924480.1| - 0.0025 17.8 0.0 0.0052 16.8 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain MobB PF03205.9 gi|410672109|ref|YP_006924480.1| - 0.0025 17.5 0.1 0.0045 16.6 0.1 1.6 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|410672109|ref|YP_006924480.1| - 0.0075 15.6 0.1 0.17 11.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain PduV-EutP PF10662.4 gi|410672109|ref|YP_006924480.1| - 0.011 15.1 0.2 0.032 13.6 0.0 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|410672109|ref|YP_006924480.1| - 0.022 15.2 0.0 0.048 14.1 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein UPF0079 PF02367.12 gi|410672109|ref|YP_006924480.1| - 0.029 13.9 0.0 0.063 12.9 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|410672109|ref|YP_006924480.1| - 0.036 13.4 0.3 0.35 10.2 0.1 2.0 2 0 0 2 2 2 0 AAA-like domain TIP49 PF06068.8 gi|410672109|ref|YP_006924480.1| - 0.039 12.6 0.0 0.056 12.1 0.0 1.2 1 0 0 1 1 1 0 TIP49 C-terminus AAA PF00004.24 gi|410672109|ref|YP_006924480.1| - 0.04 14.1 0.1 0.087 13.0 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|410672109|ref|YP_006924480.1| - 0.05 13.3 0.6 5.1 6.7 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_33 PF13671.1 gi|410672109|ref|YP_006924480.1| - 0.053 13.4 0.1 0.12 12.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|410672109|ref|YP_006924480.1| - 0.063 12.0 0.0 0.1 11.3 0.0 1.3 1 0 0 1 1 1 0 ArgK protein MMR_HSR1 PF01926.18 gi|410672109|ref|YP_006924480.1| - 0.11 12.4 1.3 0.42 10.5 0.9 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase Usp PF00582.21 gi|410672109|ref|YP_006924480.1| - 0.13 12.4 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Universal stress protein family AAA_23 PF13476.1 gi|410672109|ref|YP_006924480.1| - 0.15 12.3 0.3 0.45 10.8 0.2 1.8 1 1 0 1 1 1 0 AAA domain CBS PF00571.23 gi|410672110|ref|YP_006924481.1| - 1.1e-18 66.7 4.0 2.5e-10 39.9 0.2 2.8 3 0 0 3 3 3 2 CBS domain HTH_3 PF01381.17 gi|410672110|ref|YP_006924481.1| - 1.1e-13 50.8 0.1 2.1e-13 49.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|410672110|ref|YP_006924481.1| - 3.2e-10 40.0 0.0 5.4e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|410672110|ref|YP_006924481.1| - 9e-10 38.4 0.0 1.6e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|410672110|ref|YP_006924481.1| - 0.001 18.7 0.2 0.0029 17.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|410672110|ref|YP_006924481.1| - 0.0011 19.1 0.0 0.0021 18.1 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.1 gi|410672110|ref|YP_006924481.1| - 0.0018 17.8 0.0 0.0032 17.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|410672110|ref|YP_006924481.1| - 0.046 13.1 0.0 0.15 11.4 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding AIRS_C PF02769.17 gi|410672110|ref|YP_006924481.1| - 0.089 12.7 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 AIR synthase related protein, C-terminal domain Imm32 PF15579.1 gi|410672110|ref|YP_006924481.1| - 0.11 12.1 0.2 0.26 10.8 0.2 1.7 1 0 0 1 1 1 0 Immunity protein 32 LacI PF00356.16 gi|410672110|ref|YP_006924481.1| - 0.27 10.8 1.4 5.6 6.6 0.0 3.3 3 1 0 3 3 3 0 Bacterial regulatory proteins, lacI family Aminotran_5 PF00266.14 gi|410672111|ref|YP_006924482.1| - 5.6e-41 140.5 0.0 6.6e-41 140.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|410672111|ref|YP_006924482.1| - 0.00028 20.1 0.0 0.00051 19.2 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DMRL_synthase PF00885.14 gi|410672112|ref|YP_006924483.1| - 1.1e-20 73.7 0.4 1.4e-20 73.4 0.3 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DUF3667 PF12412.3 gi|410672112|ref|YP_006924483.1| - 0.15 11.3 0.0 0.28 10.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3667) DMRL_synthase PF00885.14 gi|410672113|ref|YP_006924484.1| - 2.8e-34 117.8 0.4 3.1e-34 117.7 0.3 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.16 gi|410672114|ref|YP_006924485.1| - 2.2e-65 220.9 0.0 2.5e-65 220.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|410672114|ref|YP_006924485.1| - 7.9e-07 28.1 0.0 2e-06 26.8 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|410672114|ref|YP_006924485.1| - 2.2e-06 26.1 0.0 4.2e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|410672114|ref|YP_006924485.1| - 6.3e-05 22.2 0.0 0.00017 20.8 0.0 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|410672114|ref|YP_006924485.1| - 0.00075 18.6 0.6 0.0014 17.7 0.1 1.6 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family CTP_transf_2 PF01467.21 gi|410672115|ref|YP_006924486.1| - 3.6e-18 66.0 0.0 5.6e-18 65.4 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|410672115|ref|YP_006924486.1| - 0.063 12.9 0.1 0.12 12.0 0.0 1.7 1 1 0 1 1 1 0 FAD synthetase Cyt-b5 PF00173.23 gi|410672116|ref|YP_006924487.1| - 8.1e-11 41.5 0.2 8.8e-11 41.4 0.1 1.1 1 0 0 1 1 1 1 Cytochrome b5-like Heme/Steroid binding domain Jiv90 PF14901.1 gi|410672116|ref|YP_006924487.1| - 0.15 12.0 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Cleavage inducing molecular chaperone PMSR PF01625.16 gi|410672117|ref|YP_006924488.1| - 5e-62 208.4 0.2 5.8e-62 208.1 0.1 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase TatC PF00902.13 gi|410672118|ref|YP_006924489.1| - 0.076 12.3 1.6 0.077 12.3 1.1 1.0 1 0 0 1 1 1 0 Sec-independent protein translocase protein (TatC) Anticodon_1 PF08264.8 gi|410672118|ref|YP_006924489.1| - 0.16 11.7 0.4 0.16 11.6 0.3 1.0 1 0 0 1 1 1 0 Anticodon-binding domain of tRNA DUF1638 PF07796.6 gi|410672119|ref|YP_006924490.1| - 1.8e-35 122.0 0.1 2.3e-35 121.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) YrbL-PhoP_reg PF10707.4 gi|410672119|ref|YP_006924490.1| - 0.073 12.4 0.1 8.5 5.6 0.1 2.1 2 0 0 2 2 2 0 PhoP regulatory network protein YrbL Acetyltransf_1 PF00583.19 gi|410672121|ref|YP_006924492.1| - 7.3e-17 61.1 0.0 1.1e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|410672121|ref|YP_006924492.1| - 2.7e-11 43.6 0.0 3.5e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|410672121|ref|YP_006924492.1| - 2.3e-09 37.2 0.0 3.9e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|410672121|ref|YP_006924492.1| - 0.00012 21.9 0.0 0.00016 21.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|410672121|ref|YP_006924492.1| - 0.00015 21.4 0.0 0.00031 20.4 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|410672121|ref|YP_006924492.1| - 0.00059 19.7 0.0 0.0016 18.3 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|410672121|ref|YP_006924492.1| - 0.0024 17.7 0.0 0.0044 16.8 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|410672121|ref|YP_006924492.1| - 0.062 13.4 0.1 0.075 13.1 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Fes1 PF08609.5 gi|410672122|ref|YP_006924493.1| - 0.081 13.4 0.1 0.11 13.0 0.1 1.1 1 0 0 1 1 1 0 Nucleotide exchange factor Fes1 TPR_12 PF13424.1 gi|410672123|ref|YP_006924494.1| - 2.7e-45 152.1 2.7 1.3e-19 69.8 0.0 3.1 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_10 PF13374.1 gi|410672123|ref|YP_006924494.1| - 1.5e-41 139.1 0.2 7.1e-13 48.0 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|410672123|ref|YP_006924494.1| - 8e-22 75.2 2.6 7e-07 28.5 0.1 5.1 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|410672123|ref|YP_006924494.1| - 9.6e-20 69.3 4.5 1.1e-05 24.8 0.1 5.2 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|410672123|ref|YP_006924494.1| - 5.9e-19 67.4 3.0 2.3e-06 27.1 0.0 3.2 2 1 1 3 3 3 3 TPR repeat TPR_2 PF07719.12 gi|410672123|ref|YP_006924494.1| - 2.1e-15 55.2 4.7 0.0026 17.5 0.0 5.2 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|410672123|ref|YP_006924494.1| - 2.4e-12 46.0 1.8 0.0067 16.5 0.0 6.0 5 3 0 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|410672123|ref|YP_006924494.1| - 8.6e-09 35.8 0.2 0.0082 16.7 0.0 3.6 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|410672123|ref|YP_006924494.1| - 1.6e-07 31.3 0.4 1 10.1 0.0 4.8 3 2 2 5 5 5 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|410672123|ref|YP_006924494.1| - 3.1e-07 29.7 7.2 0.24 11.2 0.1 4.4 4 0 0 4 4 4 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|410672123|ref|YP_006924494.1| - 1.5e-06 28.2 1.1 0.01 15.9 0.2 2.9 1 1 2 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_3 PF07720.7 gi|410672123|ref|YP_006924494.1| - 1.3e-05 24.8 4.0 0.017 14.9 0.0 3.9 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_5 PF12688.2 gi|410672123|ref|YP_006924494.1| - 0.00047 20.1 0.1 0.69 9.9 0.0 4.2 2 1 0 3 3 3 1 Tetratrico peptide repeat TPR_19 PF14559.1 gi|410672123|ref|YP_006924494.1| - 0.0029 17.9 1.0 2.1 8.7 0.0 3.5 1 1 2 4 4 4 1 Tetratricopeptide repeat SNAP PF14938.1 gi|410672123|ref|YP_006924494.1| - 0.012 14.8 0.0 3.3 6.7 0.0 2.4 2 1 0 2 2 2 0 Soluble NSF attachment protein, SNAP TPR_6 PF13174.1 gi|410672123|ref|YP_006924494.1| - 0.02 15.3 3.3 15 6.2 0.0 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat RibD_C PF01872.12 gi|410672124|ref|YP_006924495.1| - 4.4e-26 91.7 0.0 1.3e-24 86.9 0.0 2.0 1 1 0 1 1 1 1 RibD C-terminal domain DHFR_1 PF00186.14 gi|410672124|ref|YP_006924495.1| - 3.1e-07 30.1 0.0 3.9e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 Dihydrofolate reductase SBP_bac_11 PF13531.1 gi|410672124|ref|YP_006924495.1| - 0.16 11.6 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Arch_ATPase PF01637.13 gi|410672125|ref|YP_006924496.1| - 8.5e-08 32.1 0.1 9.3e-08 32.0 0.1 1.0 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|410672125|ref|YP_006924496.1| - 0.0013 18.7 0.0 0.0014 18.6 0.0 1.0 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|410672125|ref|YP_006924496.1| - 0.0049 16.7 0.5 0.0083 16.0 0.2 1.5 1 1 1 2 2 2 1 AAA domain Pentapeptide PF00805.17 gi|410672126|ref|YP_006924497.1| - 2.2e-41 138.4 61.6 8.7e-13 47.1 4.0 6.6 1 1 6 7 7 7 7 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|410672126|ref|YP_006924497.1| - 1.1e-24 86.0 0.0 1.2e-09 37.7 0.0 3.4 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.1 gi|410672126|ref|YP_006924497.1| - 1.9e-15 56.4 0.0 5.7e-05 22.9 0.0 4.5 2 1 2 4 4 4 4 Pentapeptide repeats (9 copies) KAP_NTPase PF07693.9 gi|410672126|ref|YP_006924497.1| - 0.0019 17.2 1.3 0.0029 16.6 0.2 1.9 2 0 0 2 2 2 1 KAP family P-loop domain DDE_Tnp_IS1 PF03400.8 gi|410672127|ref|YP_006924498.1| - 2.9e-08 33.8 0.1 3.2e-08 33.7 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase Arginosuc_synth PF00764.14 gi|410672129|ref|YP_006924500.1| - 2.3e-177 589.8 0.1 2.7e-177 589.6 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase NAD_synthase PF02540.12 gi|410672129|ref|YP_006924500.1| - 1.6e-05 23.9 0.0 3.1e-05 22.9 0.0 1.6 1 1 0 1 1 1 1 NAD synthase Asn_synthase PF00733.16 gi|410672129|ref|YP_006924500.1| - 1.7e-05 24.4 0.0 2.7e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|410672129|ref|YP_006924500.1| - 0.0004 19.7 0.1 0.002 17.4 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|410672129|ref|YP_006924500.1| - 0.0037 15.8 0.0 0.0078 14.8 0.0 1.5 1 0 0 1 1 1 1 tRNA methyl transferase CPSase_L_D2 PF02786.12 gi|410672130|ref|YP_006924501.1| - 7.2e-107 355.4 0.4 6.2e-72 241.3 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|410672130|ref|YP_006924501.1| - 6e-49 164.7 0.0 1.2e-24 86.4 0.0 3.0 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|410672130|ref|YP_006924501.1| - 1.5e-42 145.4 0.1 1.9e-20 73.3 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain CPSase_L_D3 PF02787.14 gi|410672130|ref|YP_006924501.1| - 3.5e-42 143.0 0.1 8.5e-42 141.8 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.1 gi|410672130|ref|YP_006924501.1| - 5.2e-26 91.1 0.0 9.8e-10 37.6 0.0 3.8 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon MGS PF02142.17 gi|410672130|ref|YP_006924501.1| - 6.9e-23 80.4 0.3 3.1e-21 75.1 0.0 3.6 3 0 0 3 3 3 1 MGS-like domain ATP-grasp PF02222.17 gi|410672130|ref|YP_006924501.1| - 1e-15 57.4 0.0 6.5e-07 28.8 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|410672130|ref|YP_006924501.1| - 2e-14 53.5 0.0 7.4e-06 25.4 0.0 2.6 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|410672130|ref|YP_006924501.1| - 2.4e-13 50.2 0.2 1.9e-05 24.5 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.14 gi|410672130|ref|YP_006924501.1| - 2.7e-07 30.3 0.0 0.011 15.3 0.0 2.5 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|410672130|ref|YP_006924501.1| - 0.00018 20.7 0.0 0.016 14.4 0.0 2.9 2 1 1 3 3 3 1 ATP-grasp domain GFO_IDH_MocA PF01408.17 gi|410672130|ref|YP_006924501.1| - 0.1 13.1 0.1 1.2 9.6 0.0 2.9 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold CPSase_sm_chain PF00988.17 gi|410672131|ref|YP_006924502.1| - 1.2e-47 160.6 0.1 2e-47 159.9 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|410672131|ref|YP_006924502.1| - 5e-41 140.2 0.0 6.7e-41 139.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|410672131|ref|YP_006924502.1| - 1.9e-07 30.7 1.2 3.5e-05 23.3 0.9 2.2 1 1 0 1 1 1 1 Peptidase C26 PD40 PF07676.7 gi|410672132|ref|YP_006924503.1| - 6.1e-44 147.0 13.1 4.7e-10 38.8 0.1 6.2 6 0 0 6 6 6 6 WD40-like Beta Propeller Repeat DPPIV_N PF00930.16 gi|410672132|ref|YP_006924503.1| - 3.7e-18 65.2 2.1 8.1e-08 31.2 0.0 4.5 1 1 3 4 4 4 4 Dipeptidyl peptidase IV (DPP IV) N-terminal region Pectate_lyase22 PF14583.1 gi|410672132|ref|YP_006924503.1| - 1.1e-09 37.2 0.5 0.01 14.3 0.0 4.4 1 1 2 4 4 4 3 Oligogalacturonate lyase Gmad1 PF10647.4 gi|410672132|ref|YP_006924503.1| - 0.00029 20.3 0.0 0.17 11.2 0.0 3.2 2 1 0 2 2 2 1 Lipoprotein LpqB beta-propeller domain Peptidase_S9_N PF02897.10 gi|410672132|ref|YP_006924503.1| - 0.01 14.4 0.9 0.12 10.8 0.1 2.3 2 1 1 3 3 3 0 Prolyl oligopeptidase, N-terminal beta-propeller domain GatB_N PF02934.10 gi|410672133|ref|YP_006924504.1| - 4e-71 239.2 0.0 5.4e-71 238.7 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|410672133|ref|YP_006924504.1| - 1.9e-16 60.0 0.0 3e-16 59.4 0.0 1.3 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|410672133|ref|YP_006924504.1| - 1.1e-15 57.6 0.0 2.2e-15 56.5 0.0 1.6 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|410672133|ref|YP_006924504.1| - 0.00087 19.1 0.1 0.0017 18.1 0.1 1.5 1 0 0 1 1 1 1 Yqey-like protein DUF3969 PF13108.1 gi|410672133|ref|YP_006924504.1| - 0.073 12.7 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3969) Fer4_8 PF13183.1 gi|410672134|ref|YP_006924505.1| - 5e-12 45.6 8.2 7.7e-12 45.0 5.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410672134|ref|YP_006924505.1| - 7.2e-09 35.8 23.3 9.2e-08 32.3 7.5 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410672134|ref|YP_006924505.1| - 5.8e-07 29.2 11.3 1e-05 25.1 9.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410672134|ref|YP_006924505.1| - 1.1e-06 28.2 11.6 5.5e-05 22.8 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|410672134|ref|YP_006924505.1| - 3.8e-06 27.5 5.9 0.019 15.6 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|410672134|ref|YP_006924505.1| - 5.1e-06 26.7 11.8 1.4e-05 25.3 8.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410672134|ref|YP_006924505.1| - 1.3e-05 24.7 11.5 0.0059 16.4 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|410672134|ref|YP_006924505.1| - 3.2e-05 24.2 11.7 0.0049 17.2 0.4 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410672134|ref|YP_006924505.1| - 3.4e-05 23.8 13.3 0.0056 16.9 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|410672134|ref|YP_006924505.1| - 7.5e-05 22.1 12.7 0.0042 16.6 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|410672134|ref|YP_006924505.1| - 8.3e-05 22.7 16.2 0.0023 18.1 11.8 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|410672134|ref|YP_006924505.1| - 0.0054 17.2 3.1 0.74 10.4 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|410672134|ref|YP_006924505.1| - 0.011 15.6 11.2 0.047 13.5 7.8 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|410672134|ref|YP_006924505.1| - 0.032 14.7 17.7 0.8 10.4 3.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|410672134|ref|YP_006924505.1| - 0.19 11.3 9.0 1.8 8.2 0.2 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.1 gi|410672134|ref|YP_006924505.1| - 0.23 11.8 7.9 0.32 11.4 0.7 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain CCG PF02754.11 gi|410672135|ref|YP_006924506.1| - 1.5e-34 117.8 0.5 4.7e-17 61.7 0.3 2.4 2 0 0 2 2 2 2 Cysteine-rich domain DUF948 PF06103.6 gi|410672135|ref|YP_006924506.1| - 0.014 15.2 0.0 0.03 14.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) AAA_33 PF13671.1 gi|410672135|ref|YP_006924506.1| - 0.046 13.5 0.0 0.075 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain zf-RING_3 PF14369.1 gi|410672135|ref|YP_006924506.1| - 0.15 12.0 2.0 13 5.9 0.0 2.7 2 0 0 2 2 2 0 zinc-finger Fer4 PF00037.22 gi|410672136|ref|YP_006924507.1| - 5.1e-23 79.6 38.7 1e-07 31.2 3.0 4.7 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|410672136|ref|YP_006924507.1| - 5.1e-17 61.4 22.1 3e-08 33.3 5.8 3.7 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410672136|ref|YP_006924507.1| - 3.7e-15 56.0 73.3 1.6e-07 31.5 8.7 4.6 3 2 4 7 7 6 6 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410672136|ref|YP_006924507.1| - 4e-15 56.3 17.1 0.0013 19.4 0.5 4.8 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|410672136|ref|YP_006924507.1| - 5.6e-15 54.2 44.5 0.00037 20.2 3.3 5.2 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_6 PF12837.2 gi|410672136|ref|YP_006924507.1| - 3.2e-14 52.0 40.8 1.7e-05 24.4 0.9 5.0 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|410672136|ref|YP_006924507.1| - 1.5e-13 50.3 31.0 2e-05 24.3 7.8 5.0 4 1 2 6 6 6 5 4Fe-4S dicluster domain Pyr_redox_2 PF07992.9 gi|410672136|ref|YP_006924507.1| - 1.9e-13 50.7 0.3 5.7e-11 42.6 0.1 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_9 PF13187.1 gi|410672136|ref|YP_006924507.1| - 1.3e-11 44.6 32.6 6.8e-07 29.4 5.0 4.0 3 2 2 5 5 4 4 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410672136|ref|YP_006924507.1| - 2.9e-11 43.5 23.8 0.0016 18.7 0.5 5.2 5 0 0 5 5 5 4 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|410672136|ref|YP_006924507.1| - 1.8e-10 40.7 26.2 0.00016 21.6 6.1 4.2 4 1 0 4 4 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|410672136|ref|YP_006924507.1| - 9.5e-10 38.7 26.3 0.023 15.1 0.4 5.0 5 0 0 5 5 4 4 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|410672136|ref|YP_006924507.1| - 7.6e-08 32.8 30.4 0.028 14.9 0.5 4.9 3 1 1 4 4 4 3 4Fe-4S single cluster domain FAD_binding_2 PF00890.19 gi|410672136|ref|YP_006924507.1| - 4.3e-07 29.1 0.2 6.5e-07 28.5 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Fer4_4 PF12800.2 gi|410672136|ref|YP_006924507.1| - 1.5e-06 28.0 40.8 0.057 13.7 1.5 5.3 5 0 0 5 5 4 4 4Fe-4S binding domain NAD_binding_8 PF13450.1 gi|410672136|ref|YP_006924507.1| - 1.6e-06 28.0 1.1 3.9e-06 26.7 0.0 2.2 3 0 0 3 3 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|410672136|ref|YP_006924507.1| - 2e-06 26.9 0.1 0.00012 21.1 0.1 2.5 3 0 0 3 3 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|410672136|ref|YP_006924507.1| - 2.4e-06 27.8 0.8 0.00016 22.0 0.3 3.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|410672136|ref|YP_006924507.1| - 2.4e-06 26.8 0.0 3.9e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|410672136|ref|YP_006924507.1| - 4.2e-06 25.8 0.1 1.2e-05 24.3 0.0 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|410672136|ref|YP_006924507.1| - 7.5e-06 24.6 1.1 1.4e-05 23.7 0.7 1.5 1 1 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|410672136|ref|YP_006924507.1| - 2.1e-05 24.6 0.2 9.3e-05 22.5 0.1 2.0 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_3 PF12798.2 gi|410672136|ref|YP_006924507.1| - 0.00027 21.2 50.9 0.38 11.4 5.9 5.2 4 0 0 4 4 4 3 4Fe-4S binding domain Thi4 PF01946.12 gi|410672136|ref|YP_006924507.1| - 0.00057 19.0 0.0 0.0012 17.9 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Fer4_11 PF13247.1 gi|410672136|ref|YP_006924507.1| - 0.0017 18.2 12.8 0.21 11.5 3.2 4.4 3 1 0 3 3 3 1 4Fe-4S dicluster domain AlaDh_PNT_C PF01262.16 gi|410672136|ref|YP_006924507.1| - 0.0019 17.7 0.0 0.0055 16.2 0.0 1.7 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|410672136|ref|YP_006924507.1| - 0.023 14.3 0.2 0.042 13.4 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_13 PF13370.1 gi|410672136|ref|YP_006924507.1| - 0.039 14.3 36.2 0.18 12.2 1.9 4.6 4 0 0 4 4 4 0 4Fe-4S single cluster domain CPSase_L_chain PF00289.17 gi|410672136|ref|YP_006924507.1| - 0.077 13.0 0.0 0.34 11.0 0.0 2.1 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain FAD_binding_3 PF01494.14 gi|410672136|ref|YP_006924507.1| - 0.11 11.5 0.1 0.18 10.8 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain Lycopene_cycl PF05834.7 gi|410672136|ref|YP_006924507.1| - 0.19 10.5 1.7 0.18 10.6 0.1 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein FlpD PF02662.11 gi|410672137|ref|YP_006924508.1| - 1.2e-07 31.4 0.0 1.4e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit FlpD PF02662.11 gi|410672138|ref|YP_006924509.1| - 3.5e-29 101.0 0.0 3.8e-29 100.8 0.0 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit FrhB_FdhB_C PF04432.8 gi|410672139|ref|YP_006924510.1| - 2.8e-38 130.8 0.2 6.8e-38 129.6 0.2 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|410672139|ref|YP_006924510.1| - 5.5e-17 61.3 0.1 1.2e-16 60.3 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|410672139|ref|YP_006924510.1| - 1.4e-09 37.7 15.5 1.4e-09 37.7 10.7 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|410672139|ref|YP_006924510.1| - 1.8e-09 37.9 12.5 1.9e-05 24.9 1.8 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|410672139|ref|YP_006924510.1| - 4.7e-09 35.4 21.2 2.5e-06 26.8 2.3 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|410672139|ref|YP_006924510.1| - 4.5e-08 32.5 15.2 7.6e-05 22.4 1.0 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|410672139|ref|YP_006924510.1| - 4.9e-08 32.6 13.0 0.00014 21.5 0.2 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410672139|ref|YP_006924510.1| - 3e-07 30.6 18.9 6.8e-07 29.4 10.8 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410672139|ref|YP_006924510.1| - 3.4e-06 27.2 14.5 3.4e-06 27.2 10.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410672139|ref|YP_006924510.1| - 1.6e-05 25.1 19.7 0.00016 21.9 12.3 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|410672139|ref|YP_006924510.1| - 7.1e-05 23.4 15.3 0.00031 21.4 9.2 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|410672139|ref|YP_006924510.1| - 7.2e-05 22.8 2.1 7.2e-05 22.8 1.5 3.7 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|410672139|ref|YP_006924510.1| - 7.4e-05 22.5 20.7 0.0018 18.1 3.5 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410672139|ref|YP_006924510.1| - 0.00076 19.2 4.3 0.00076 19.2 3.0 2.8 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|410672139|ref|YP_006924510.1| - 0.0012 19.2 26.6 0.0018 18.6 3.6 2.9 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|410672139|ref|YP_006924510.1| - 0.1 13.0 18.6 0.66 10.4 2.1 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|410672139|ref|YP_006924510.1| - 0.36 11.4 13.6 0.15 12.6 0.5 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Molybdop_Fe4S4 PF04879.11 gi|410672140|ref|YP_006924511.1| - 5.3e-08 32.5 0.2 1e-07 31.6 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molybdopterin PF00384.17 gi|410672140|ref|YP_006924511.1| - 1.8e-06 27.0 0.0 0.014 14.1 0.0 2.2 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|410672140|ref|YP_006924511.1| - 0.00029 20.6 0.0 0.00065 19.4 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Linker_histone PF00538.14 gi|410672141|ref|YP_006924512.1| - 0.032 14.3 0.1 0.037 14.1 0.1 1.1 1 0 0 1 1 1 0 linker histone H1 and H5 family Rhodanese PF00581.15 gi|410672142|ref|YP_006924513.1| - 1.5e-38 131.6 0.6 8.6e-17 61.5 0.0 3.2 3 0 0 3 3 3 3 Rhodanese-like domain Methyltransf_33 PF10017.4 gi|410672143|ref|YP_006924514.1| - 5.8e-44 149.0 0.1 9.3e-44 148.3 0.1 1.3 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent Methyltransf_31 PF13847.1 gi|410672143|ref|YP_006924514.1| - 0.06 12.9 0.1 0.15 11.6 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Aminotran_5 PF00266.14 gi|410672144|ref|YP_006924515.1| - 4.3e-129 430.4 0.1 4.9e-129 430.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|410672144|ref|YP_006924515.1| - 4.8e-11 42.2 0.0 7.7e-11 41.5 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|410672144|ref|YP_006924515.1| - 7.7e-11 41.6 0.1 1.2e-10 41.0 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|410672144|ref|YP_006924515.1| - 5.9e-07 28.9 0.1 7.3e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase SLA_LP_auto_ag PF05889.8 gi|410672144|ref|YP_006924515.1| - 2.6e-05 22.9 0.3 5.7e-05 21.7 0.2 1.6 1 1 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Pyridoxal_deC PF00282.14 gi|410672144|ref|YP_006924515.1| - 0.0036 15.7 0.1 0.0057 15.1 0.1 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Cys_Met_Meta_PP PF01053.15 gi|410672144|ref|YP_006924515.1| - 0.0057 14.9 0.2 0.013 13.8 0.1 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.8 gi|410672144|ref|YP_006924515.1| - 0.12 11.0 0.0 0.26 9.9 0.0 1.5 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase SufE PF02657.10 gi|410672145|ref|YP_006924516.1| - 1.8e-32 111.5 0.0 2.1e-32 111.4 0.0 1.0 1 0 0 1 1 1 1 Fe-S metabolism associated domain Fer4 PF00037.22 gi|410672146|ref|YP_006924517.1| - 3.3e-37 124.6 71.8 7.9e-08 31.5 1.0 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_7 PF12838.2 gi|410672146|ref|YP_006924517.1| - 1.3e-33 115.1 57.7 3e-11 43.5 4.3 4.5 4 0 0 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410672146|ref|YP_006924517.1| - 1.3e-29 101.7 57.5 1.2e-09 37.8 4.4 6.1 4 3 2 6 6 6 6 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|410672146|ref|YP_006924517.1| - 8.4e-25 86.8 61.5 1.1e-07 32.0 5.4 5.7 2 2 5 7 7 7 7 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410672146|ref|YP_006924517.1| - 1.2e-23 82.6 59.0 1.1e-06 28.4 6.1 6.1 4 2 3 7 7 7 7 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|410672146|ref|YP_006924517.1| - 2.1e-22 77.9 80.0 2.4e-05 23.9 1.5 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_16 PF13484.1 gi|410672146|ref|YP_006924517.1| - 1.4e-21 76.9 51.3 0.0005 20.7 5.2 6.9 5 1 1 6 6 6 5 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|410672146|ref|YP_006924517.1| - 2.6e-21 74.1 68.4 2e-05 24.2 1.0 8.4 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_8 PF13183.1 gi|410672146|ref|YP_006924517.1| - 1.4e-19 69.8 51.0 1.6e-06 28.0 3.6 4.9 4 1 1 5 5 5 5 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|410672146|ref|YP_006924517.1| - 1.8e-12 47.5 56.0 0.022 15.2 0.4 8.4 7 1 1 8 8 8 5 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|410672146|ref|YP_006924517.1| - 1.9e-08 34.5 61.1 0.0065 16.7 5.8 7.2 2 2 6 8 8 8 6 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|410672146|ref|YP_006924517.1| - 6.3e-07 29.6 69.9 0.15 12.4 0.9 8.3 7 1 1 8 8 8 6 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|410672146|ref|YP_006924517.1| - 1.2e-06 28.3 77.7 0.011 15.9 1.9 8.4 8 0 0 8 8 8 4 4Fe-4S binding domain Fer4_11 PF13247.1 gi|410672146|ref|YP_006924517.1| - 2.6e-06 27.2 36.9 0.00039 20.2 7.0 4.8 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|410672146|ref|YP_006924517.1| - 6.1e-05 23.2 91.7 0.012 16.1 3.4 8.3 8 0 0 8 8 8 4 4Fe-4S binding domain Fer4_18 PF13746.1 gi|410672146|ref|YP_006924517.1| - 0.0015 18.8 67.0 0.014 15.8 1.0 8.2 6 2 1 8 8 8 2 4Fe-4S dicluster domain FlpD PF02662.11 gi|410672147|ref|YP_006924518.1| - 1.3e-50 170.2 2.5 1.3e-47 160.5 0.1 4.0 4 0 0 4 4 4 1 Methyl-viologen-reducing hydrogenase, delta subunit Pyr_redox_2 PF07992.9 gi|410672147|ref|YP_006924518.1| - 1.4e-16 61.0 4.8 3e-12 46.8 2.3 3.3 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.2 gi|410672147|ref|YP_006924518.1| - 1.7e-14 53.9 36.1 1.7e-08 34.6 7.2 5.2 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4 PF00037.22 gi|410672147|ref|YP_006924518.1| - 2.6e-13 48.9 54.9 3.6e-07 29.4 2.7 5.8 6 1 0 6 6 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|410672147|ref|YP_006924518.1| - 1.6e-11 43.8 36.5 7.3e-07 28.8 6.0 4.8 5 0 0 5 5 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410672147|ref|YP_006924518.1| - 1.8e-09 36.9 46.8 0.00034 20.3 1.9 5.7 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|410672147|ref|YP_006924518.1| - 4e-09 36.2 22.4 1.8e-07 30.9 8.6 5.8 5 1 1 6 6 6 2 4Fe-4S dicluster domain FAD_binding_2 PF00890.19 gi|410672147|ref|YP_006924518.1| - 2.7e-08 33.0 0.9 4.3e-08 32.4 0.6 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_9 PF13187.1 gi|410672147|ref|YP_006924518.1| - 1.1e-07 32.0 42.8 1.2e-06 28.6 7.7 4.6 4 1 2 6 6 5 3 4Fe-4S dicluster domain FAD_oxidored PF12831.2 gi|410672147|ref|YP_006924518.1| - 1.6e-07 30.7 0.2 2.7e-07 30.0 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|410672147|ref|YP_006924518.1| - 3.5e-07 29.4 0.6 7e-06 25.1 0.5 2.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase Fer4_15 PF13459.1 gi|410672147|ref|YP_006924518.1| - 3.7e-07 30.6 24.0 0.039 14.5 0.4 4.8 4 0 0 4 4 4 3 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|410672147|ref|YP_006924518.1| - 4.2e-07 29.8 34.9 0.00015 21.7 7.7 5.0 3 2 3 6 6 6 4 4Fe-4S dicluster domain GIDA PF01134.17 gi|410672147|ref|YP_006924518.1| - 8e-07 28.2 0.6 1.9e-06 26.9 0.1 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|410672147|ref|YP_006924518.1| - 1.2e-06 28.7 1.9 5e-05 23.6 0.5 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|410672147|ref|YP_006924518.1| - 4e-06 26.7 0.0 9.1e-06 25.6 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_16 PF13484.1 gi|410672147|ref|YP_006924518.1| - 5.8e-06 26.9 40.4 0.0031 18.2 0.1 5.1 5 1 0 5 5 4 3 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|410672147|ref|YP_006924518.1| - 8.8e-06 25.3 59.1 0.0013 18.4 2.7 5.9 7 0 0 7 7 5 4 4Fe-4S binding domain HI0933_like PF03486.9 gi|410672147|ref|YP_006924518.1| - 1.6e-05 23.5 0.9 2.6e-05 22.8 0.6 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|410672147|ref|YP_006924518.1| - 3.2e-05 24.0 0.8 0.00021 21.4 0.6 2.3 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|410672147|ref|YP_006924518.1| - 0.00011 21.4 0.1 0.00038 19.6 0.1 1.9 1 0 0 1 1 1 1 Thi4 family Fer4_17 PF13534.1 gi|410672147|ref|YP_006924518.1| - 0.00032 20.9 36.6 0.019 15.2 2.8 4.9 4 1 2 6 6 5 3 4Fe-4S dicluster domain FAD_binding_3 PF01494.14 gi|410672147|ref|YP_006924518.1| - 0.00034 19.7 0.8 0.00061 18.9 0.6 1.4 1 0 0 1 1 1 1 FAD binding domain Fer4_18 PF13746.1 gi|410672147|ref|YP_006924518.1| - 0.00037 20.8 43.6 0.0039 17.5 0.4 5.5 5 1 1 6 6 5 4 4Fe-4S dicluster domain K_oxygenase PF13434.1 gi|410672147|ref|YP_006924518.1| - 0.0033 16.4 0.3 0.78 8.5 0.0 3.1 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.1 gi|410672147|ref|YP_006924518.1| - 0.0093 16.2 0.2 0.052 13.8 0.0 2.4 2 1 0 2 2 1 1 Putative NAD(P)-binding DUF4001 PF13165.1 gi|410672147|ref|YP_006924518.1| - 0.0099 15.5 1.3 0.0099 15.5 0.9 3.7 4 0 0 4 4 3 1 Protein of unknown function (DUF4001) Lycopene_cycl PF05834.7 gi|410672147|ref|YP_006924518.1| - 0.017 14.0 0.5 0.029 13.3 0.3 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Fer4_4 PF12800.2 gi|410672147|ref|YP_006924518.1| - 0.023 15.0 47.5 0.045 14.0 2.1 6.1 6 0 0 6 6 5 0 4Fe-4S binding domain AlaDh_PNT_C PF01262.16 gi|410672147|ref|YP_006924518.1| - 0.042 13.4 0.0 0.083 12.4 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|410672147|ref|YP_006924518.1| - 0.059 13.0 0.7 0.18 11.4 0.5 1.8 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_13 PF13370.1 gi|410672147|ref|YP_006924518.1| - 1.1 9.6 31.4 0.49 10.8 1.0 4.7 4 0 0 4 4 4 0 4Fe-4S single cluster domain Prismane PF03063.15 gi|410672148|ref|YP_006924519.1| - 1.4e-05 23.6 1.1 1.4e-05 23.6 0.7 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Prismane PF03063.15 gi|410672149|ref|YP_006924520.1| - 1.1e-167 558.6 0.0 1.3e-167 558.3 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Cupin_2 PF07883.6 gi|410672150|ref|YP_006924521.1| - 9e-16 57.1 0.0 1.3e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|410672150|ref|YP_006924521.1| - 0.00067 19.3 0.0 0.0008 19.1 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|410672150|ref|YP_006924521.1| - 0.00074 18.9 0.0 0.00094 18.6 0.0 1.2 1 0 0 1 1 1 1 Cupin Pirin_C PF05726.8 gi|410672150|ref|YP_006924521.1| - 0.0061 16.6 0.0 0.0081 16.2 0.0 1.2 1 0 0 1 1 1 1 Pirin C-terminal cupin domain DUF4585 PF15232.1 gi|410672150|ref|YP_006924521.1| - 0.012 15.4 0.0 0.43 10.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4585) MannoseP_isomer PF01050.13 gi|410672150|ref|YP_006924521.1| - 0.034 13.7 0.0 0.038 13.6 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Cupin_7 PF12973.2 gi|410672150|ref|YP_006924521.1| - 0.041 13.7 0.0 0.052 13.3 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain cNMP_binding PF00027.24 gi|410672150|ref|YP_006924521.1| - 0.047 13.4 0.0 0.058 13.2 0.0 1.2 1 0 0 1 1 1 0 Cyclic nucleotide-binding domain FeThRed_B PF02943.10 gi|410672151|ref|YP_006924522.1| - 7.6e-26 89.9 1.5 9.1e-26 89.7 1.0 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain FeS PF04060.8 gi|410672152|ref|YP_006924523.1| - 3.9e-15 55.1 1.1 3.9e-15 55.1 0.8 2.9 3 0 0 3 3 2 1 Putative Fe-S cluster Fer4 PF00037.22 gi|410672152|ref|YP_006924523.1| - 2.7e-08 33.0 22.4 5.7e-08 32.0 3.8 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|410672152|ref|YP_006924523.1| - 2.4e-07 30.9 31.7 1.2e-05 25.4 9.6 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|410672152|ref|YP_006924523.1| - 3.2e-07 29.8 17.6 1.9e-06 27.4 2.4 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|410672152|ref|YP_006924523.1| - 3.6e-06 26.5 23.2 4.8e-06 26.2 3.3 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|410672152|ref|YP_006924523.1| - 7.4e-06 25.9 25.7 0.0003 20.7 4.5 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|410672152|ref|YP_006924523.1| - 1.2e-05 25.5 21.4 0.0022 18.3 7.6 3.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|410672152|ref|YP_006924523.1| - 4.7e-05 23.6 3.3 4.7e-05 23.6 2.3 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|410672152|ref|YP_006924523.1| - 9.3e-05 22.1 12.9 9.3e-05 22.1 9.0 3.3 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|410672152|ref|YP_006924523.1| - 9.5e-05 22.1 1.0 9.5e-05 22.1 0.7 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|410672152|ref|YP_006924523.1| - 0.00012 22.1 19.3 0.00028 20.9 1.7 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|410672152|ref|YP_006924523.1| - 0.00042 20.9 16.6 0.13 12.9 0.6 2.9 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain YhfH PF14149.1 gi|410672152|ref|YP_006924523.1| - 0.0011 18.6 0.6 0.0011 18.6 0.4 2.5 2 0 0 2 2 2 1 YhfH-like protein Fer4_11 PF13247.1 gi|410672152|ref|YP_006924523.1| - 0.0023 17.8 13.4 0.49 10.3 9.3 3.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|410672152|ref|YP_006924523.1| - 0.007 16.7 5.5 0.007 16.7 3.8 2.7 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|410672152|ref|YP_006924523.1| - 0.012 16.0 25.2 0.018 15.5 5.5 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|410672152|ref|YP_006924523.1| - 0.13 12.8 16.2 0.058 13.9 7.7 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|410672152|ref|YP_006924523.1| - 0.21 11.9 18.1 0.26 11.7 7.8 3.1 2 1 0 2 2 2 0 4Fe-4S single cluster domain TPP_enzyme_M PF00205.17 gi|410672153|ref|YP_006924524.1| - 4.2e-05 23.3 0.1 0.015 15.0 0.1 3.1 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain Molydop_binding PF01568.16 gi|410672154|ref|YP_006924525.1| - 2.6e-11 43.3 0.0 3.1e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|410672154|ref|YP_006924525.1| - 0.045 13.7 0.0 0.059 13.3 0.0 1.3 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain TM2 PF05154.11 gi|410672155|ref|YP_006924526.1| - 0.00014 21.9 12.7 0.0055 16.8 8.8 2.0 1 1 0 1 1 1 1 TM2 domain DUF818 PF05677.7 gi|410672155|ref|YP_006924526.1| - 0.42 9.3 3.1 0.4 9.3 2.2 1.1 1 0 0 1 1 1 0 Chlamydia CHLPS protein (DUF818) ChaB PF06150.7 gi|410672156|ref|YP_006924527.1| - 5.9e-27 93.2 2.2 7.1e-27 92.9 1.5 1.1 1 0 0 1 1 1 1 ChaB DUF1250 PF06855.7 gi|410672156|ref|YP_006924527.1| - 0.022 14.2 0.0 0.045 13.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1250) PepSY PF03413.14 gi|410672157|ref|YP_006924528.1| - 0.015 15.9 1.0 0.049 14.2 0.7 1.8 1 1 0 1 1 1 0 Peptidase propeptide and YPEB domain zf-A20 PF01754.11 gi|410672157|ref|YP_006924528.1| - 1.3 8.7 5.9 2.6 7.6 4.1 1.5 1 0 0 1 1 1 0 A20-like zinc finger IncA PF04156.9 gi|410672158|ref|YP_006924529.1| - 0.00028 20.5 0.0 0.00032 20.3 0.0 1.0 1 0 0 1 1 1 1 IncA protein DUF948 PF06103.6 gi|410672158|ref|YP_006924529.1| - 0.0038 17.0 0.1 0.0041 16.9 0.1 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) DUF1469 PF07332.6 gi|410672158|ref|YP_006924529.1| - 0.013 15.2 0.5 0.02 14.6 0.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) LMBR1 PF04791.11 gi|410672158|ref|YP_006924529.1| - 0.021 13.4 0.1 0.024 13.2 0.0 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF4577 PF15145.1 gi|410672158|ref|YP_006924529.1| - 0.022 14.6 0.6 0.023 14.6 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4577) ODV-E18 PF10717.4 gi|410672158|ref|YP_006924529.1| - 0.025 13.9 0.3 0.029 13.7 0.2 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 Pox_LP_H2 PF03356.10 gi|410672158|ref|YP_006924529.1| - 0.13 11.9 0.2 0.15 11.7 0.1 1.0 1 0 0 1 1 1 0 Viral late protein H2 Sugarporin_N PF11471.3 gi|410672158|ref|YP_006924529.1| - 3.3 7.4 4.7 0.43 10.2 0.4 1.6 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension HTH_5 PF01022.15 gi|410672159|ref|YP_006924530.1| - 3.7e-13 48.9 0.4 9.6e-13 47.5 0.2 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|410672159|ref|YP_006924530.1| - 1.2e-10 40.9 0.1 1.7e-10 40.5 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|410672159|ref|YP_006924530.1| - 3.2e-07 29.9 0.1 4e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|410672159|ref|YP_006924530.1| - 2.6e-06 27.0 0.2 3.3e-06 26.6 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|410672159|ref|YP_006924530.1| - 1.1e-05 24.9 0.2 1.7e-05 24.3 0.2 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|410672159|ref|YP_006924530.1| - 1.2e-05 24.5 0.1 5.7e-05 22.4 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|410672159|ref|YP_006924530.1| - 8.3e-05 22.2 0.0 0.00014 21.4 0.0 1.4 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|410672159|ref|YP_006924530.1| - 0.00035 20.2 0.1 0.0028 17.3 0.1 2.0 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|410672159|ref|YP_006924530.1| - 0.0017 18.3 0.2 0.0026 17.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|410672159|ref|YP_006924530.1| - 0.0046 17.0 0.1 0.0074 16.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_41 PF14502.1 gi|410672159|ref|YP_006924530.1| - 0.0091 15.5 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|410672159|ref|YP_006924530.1| - 0.011 15.8 0.1 0.015 15.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.14 gi|410672159|ref|YP_006924530.1| - 0.013 15.3 0.1 0.021 14.7 0.1 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.1 gi|410672159|ref|YP_006924530.1| - 0.025 14.7 0.0 0.031 14.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix LexA_DNA_bind PF01726.11 gi|410672159|ref|YP_006924530.1| - 0.03 13.8 0.0 0.048 13.2 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain DUF2250 PF10007.4 gi|410672159|ref|YP_006924530.1| - 0.051 13.4 0.1 0.064 13.1 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HxlR PF01638.12 gi|410672159|ref|YP_006924530.1| - 0.082 12.5 0.2 0.13 11.9 0.1 1.4 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_10 PF04967.7 gi|410672159|ref|YP_006924530.1| - 0.083 12.4 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain GntR PF00392.16 gi|410672159|ref|YP_006924530.1| - 0.091 12.2 0.1 0.14 11.5 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Methyltransf_11 PF08241.7 gi|410672160|ref|YP_006924531.1| - 1.1e-21 77.0 0.0 6.6e-21 74.6 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|410672160|ref|YP_006924531.1| - 1.9e-17 63.2 0.1 2.9e-16 59.3 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|410672160|ref|YP_006924531.1| - 1.3e-16 60.4 0.0 2.2e-16 59.6 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|410672160|ref|YP_006924531.1| - 2.4e-15 56.6 0.0 3.1e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|410672160|ref|YP_006924531.1| - 7.7e-13 48.7 0.0 1.9e-12 47.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410672160|ref|YP_006924531.1| - 1.5e-11 44.8 0.0 5.5e-11 43.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|410672160|ref|YP_006924531.1| - 1.5e-10 41.2 0.0 2.1e-09 37.6 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain MetW PF07021.7 gi|410672160|ref|YP_006924531.1| - 0.00017 20.9 0.0 0.00033 20.0 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|410672160|ref|YP_006924531.1| - 0.0032 17.4 0.0 0.0077 16.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|410672160|ref|YP_006924531.1| - 0.01 15.2 0.0 0.033 13.5 0.0 1.6 1 1 1 2 2 2 0 Nodulation protein S (NodS) PCMT PF01135.14 gi|410672160|ref|YP_006924531.1| - 0.13 11.7 0.0 0.58 9.6 0.0 1.8 1 1 1 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CoA_binding_2 PF13380.1 gi|410672161|ref|YP_006924532.1| - 0.0083 16.2 0.0 0.0098 16.0 0.0 1.1 1 0 0 1 1 1 1 CoA binding domain DUF457 PF04307.9 gi|410672162|ref|YP_006924533.1| - 2e-26 92.2 11.6 3.9e-26 91.2 8.1 1.5 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) HTH_45 PF14947.1 gi|410672164|ref|YP_006924535.1| - 1.1e-06 28.3 0.3 1.5e-06 27.9 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF2201_N PF13203.1 gi|410672164|ref|YP_006924535.1| - 0.0057 15.8 0.0 0.0068 15.6 0.0 1.1 1 0 0 1 1 1 1 Putative metallopeptidase domain HTH_20 PF12840.2 gi|410672164|ref|YP_006924535.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DDE_Tnp_IS1 PF03400.8 gi|410672166|ref|YP_006924537.1| - 2.9e-08 33.8 0.1 3.2e-08 33.7 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase DDE_3 PF13358.1 gi|410672167|ref|YP_006924538.1| - 6.7e-25 87.5 0.5 1.6e-24 86.3 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_29 PF13551.1 gi|410672167|ref|YP_006924538.1| - 1.7e-10 41.0 0.1 6e-10 39.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410672167|ref|YP_006924538.1| - 3.4e-09 37.3 0.5 2.1e-08 34.8 0.0 2.5 3 0 0 3 3 3 1 Homeodomain-like domain rve PF00665.21 gi|410672167|ref|YP_006924538.1| - 4.1e-09 36.5 0.0 9.3e-09 35.4 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_33 PF13592.1 gi|410672167|ref|YP_006924538.1| - 1.3e-08 34.2 0.1 3.2e-08 32.9 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn helix DDE_1 PF03184.14 gi|410672167|ref|YP_006924538.1| - 4.7e-08 32.4 0.3 4.7e-08 32.4 0.2 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease DUF3800 PF12686.2 gi|410672167|ref|YP_006924538.1| - 0.00012 21.8 2.1 0.0002 21.0 1.4 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3800) DDE_Tnp_ISAZ013 PF07592.6 gi|410672167|ref|YP_006924538.1| - 0.018 13.8 0.2 0.048 12.4 0.0 1.7 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HTH_21 PF13276.1 gi|410672167|ref|YP_006924538.1| - 0.072 13.1 0.1 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 HTH-like domain DUF1724 PF08350.5 gi|410672168|ref|YP_006924539.1| - 1e-14 53.7 0.1 2.5e-14 52.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) DUF4163 PF13739.1 gi|410672168|ref|YP_006924539.1| - 0.46 11.3 2.5 0.73 10.6 1.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4163) DUF2795 PF11387.3 gi|410672169|ref|YP_006924540.1| - 4e-13 49.0 0.5 4.9e-13 48.7 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2795) Gp-FAR-1 PF05823.7 gi|410672169|ref|YP_006924540.1| - 0.022 14.7 2.9 0.023 14.6 2.0 1.1 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) DUF4290 PF14123.1 gi|410672169|ref|YP_006924540.1| - 0.059 12.5 0.3 0.06 12.5 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4290) DDE_Tnp_1 PF01609.16 gi|410672171|ref|YP_006924542.1| - 6.8e-09 35.5 2.7 7.2e-08 32.2 1.8 2.1 1 1 0 1 1 1 1 Transposase DDE domain DDE_5 PF13546.1 gi|410672171|ref|YP_006924542.1| - 0.039 12.7 0.0 0.072 11.9 0.0 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease TFIIA PF03153.8 gi|410672172|ref|YP_006924543.1| - 2.5 7.9 23.4 4.4 7.0 16.2 1.6 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit Lactamase_B PF00753.22 gi|410672174|ref|YP_006924545.1| - 1.1e-06 28.4 1.0 7.7e-06 25.6 0.7 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF498 PF04430.9 gi|410672174|ref|YP_006924545.1| - 0.011 15.2 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF498/DUF598) Lactamase_B_2 PF12706.2 gi|410672174|ref|YP_006924545.1| - 0.016 14.7 0.7 0.032 13.7 0.5 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DUF3006 PF11213.3 gi|410672175|ref|YP_006924546.1| - 1.7e-21 75.7 1.0 1.8e-21 75.6 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) PAS_4 PF08448.5 gi|410672176|ref|YP_006924547.1| - 4e-65 216.7 0.0 4.8e-17 61.9 0.0 7.8 7 1 0 7 7 7 7 PAS fold PAS_9 PF13426.1 gi|410672176|ref|YP_006924547.1| - 8.3e-63 209.2 0.3 9.8e-11 41.9 0.0 7.8 7 0 0 7 7 7 6 PAS domain PAS PF00989.19 gi|410672176|ref|YP_006924547.1| - 1.4e-51 173.0 0.0 6.4e-13 48.4 0.0 7.7 7 0 0 7 7 7 6 PAS fold PAS_3 PF08447.6 gi|410672176|ref|YP_006924547.1| - 1.8e-49 165.7 0.2 6.1e-22 77.5 0.0 6.3 6 0 0 6 6 6 3 PAS fold Response_reg PF00072.19 gi|410672176|ref|YP_006924547.1| - 3.6e-45 152.5 3.0 1e-26 93.1 0.3 3.3 3 0 0 3 3 3 2 Response regulator receiver domain HATPase_c PF02518.21 gi|410672176|ref|YP_006924547.1| - 5.2e-31 106.6 0.3 1.2e-30 105.4 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|410672176|ref|YP_006924547.1| - 6e-26 89.3 0.7 0.00025 20.8 0.0 7.7 7 0 0 7 7 7 4 PAS domain HisKA PF00512.20 gi|410672176|ref|YP_006924547.1| - 3.4e-22 78.2 1.1 1.4e-21 76.1 0.1 2.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|410672176|ref|YP_006924547.1| - 5.2e-18 65.9 0.0 2.6e-17 63.6 0.0 2.2 2 0 0 2 2 2 1 GAF domain Hpt PF01627.18 gi|410672176|ref|YP_006924547.1| - 1.2e-11 44.3 0.4 4.7e-11 42.5 0.0 2.3 2 0 0 2 2 1 1 Hpt domain GAF_3 PF13492.1 gi|410672176|ref|YP_006924547.1| - 0.0004 20.4 0.0 0.0022 18.0 0.0 2.3 2 0 0 2 2 2 1 GAF domain GAF PF01590.21 gi|410672176|ref|YP_006924547.1| - 0.022 14.8 0.0 0.059 13.4 0.0 1.7 1 0 0 1 1 1 0 GAF domain PAS_9 PF13426.1 gi|410672177|ref|YP_006924548.1| - 3.2e-98 323.0 5.8 1e-13 51.5 0.0 10.4 10 0 0 10 10 10 10 PAS domain PAS_3 PF08447.6 gi|410672177|ref|YP_006924548.1| - 3.7e-87 286.5 8.0 5.3e-21 74.5 0.0 9.8 9 0 0 9 9 9 9 PAS fold PAS PF00989.19 gi|410672177|ref|YP_006924548.1| - 8.3e-81 267.1 0.3 3.7e-13 49.2 0.0 10.8 11 0 0 11 11 11 7 PAS fold PAS_4 PF08448.5 gi|410672177|ref|YP_006924548.1| - 5e-72 238.9 0.0 1.3e-12 47.7 0.0 10.3 10 0 0 10 10 10 8 PAS fold PAS_8 PF13188.1 gi|410672177|ref|YP_006924548.1| - 3.1e-42 141.0 0.0 2.4e-07 30.3 0.0 9.0 9 0 0 9 9 8 7 PAS domain HATPase_c PF02518.21 gi|410672177|ref|YP_006924548.1| - 1.8e-31 108.1 0.0 4.7e-31 106.7 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|410672177|ref|YP_006924548.1| - 2.4e-18 67.0 0.0 2.8e-08 34.3 0.0 3.3 3 0 0 3 3 2 2 GAF domain GAF_3 PF13492.1 gi|410672177|ref|YP_006924548.1| - 3.6e-18 65.8 0.0 1.5e-11 44.4 0.0 3.8 3 0 0 3 3 3 2 GAF domain HisKA PF00512.20 gi|410672177|ref|YP_006924548.1| - 3.2e-14 52.6 0.0 2e-13 50.0 0.0 2.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|410672177|ref|YP_006924548.1| - 2.2e-10 40.5 1.4 0.01 15.8 0.0 6.4 6 1 0 6 6 6 2 PAS fold PAS_10 PF13596.1 gi|410672177|ref|YP_006924548.1| - 6e-08 32.9 0.3 0.24 11.6 0.0 6.4 7 1 0 7 7 5 2 PAS domain GAF PF01590.21 gi|410672177|ref|YP_006924548.1| - 4.6e-07 30.0 0.0 0.00056 20.0 0.0 2.9 2 1 0 2 2 2 2 GAF domain PAS_11 PF14598.1 gi|410672177|ref|YP_006924548.1| - 7e-06 25.9 0.0 0.74 9.7 0.0 6.5 9 0 0 9 9 8 1 PAS domain HATPase_c_5 PF14501.1 gi|410672177|ref|YP_006924548.1| - 0.00012 21.7 0.0 0.00053 19.6 0.0 2.2 1 0 0 1 1 1 1 GHKL domain PAS_6 PF08348.6 gi|410672177|ref|YP_006924548.1| - 0.00092 18.7 0.0 6.2 6.4 0.0 4.4 4 0 0 4 4 4 1 YheO-like PAS domain NOGCT PF08155.6 gi|410672177|ref|YP_006924548.1| - 0.029 14.0 0.0 0.097 12.3 0.0 1.9 1 0 0 1 1 1 0 NOGCT (NUC087) domain HATPase_c_3 PF13589.1 gi|410672177|ref|YP_006924548.1| - 0.041 13.5 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cache_3 PF14827.1 gi|410672177|ref|YP_006924548.1| - 0.049 13.5 0.2 23 4.9 0.0 4.2 4 1 0 4 4 4 0 Sensory domain of two-component sensor kinase SUKH-3 PF14433.1 gi|410672177|ref|YP_006924548.1| - 0.076 12.7 1.3 5.3 6.8 0.0 3.3 4 0 0 4 4 2 0 SUKH-3 immunity protein CheW PF01584.14 gi|410672178|ref|YP_006924549.1| - 2e-39 134.1 2.3 2.4e-39 133.9 1.6 1.0 1 0 0 1 1 1 1 CheW-like domain CheX PF13690.1 gi|410672178|ref|YP_006924549.1| - 0.028 14.2 0.1 0.045 13.6 0.1 1.4 1 0 0 1 1 1 0 Chemotaxis phosphatase CheX MCPsignal PF00015.16 gi|410672179|ref|YP_006924550.1| - 2e-54 184.3 57.0 2.5e-53 180.7 25.2 6.3 5 2 3 8 8 8 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|410672179|ref|YP_006924550.1| - 7.5e-09 35.6 20.7 0.0021 18.1 0.1 9.4 10 2 1 11 11 11 2 HAMP domain DUF948 PF06103.6 gi|410672179|ref|YP_006924550.1| - 4.5e-05 23.2 31.4 0.12 12.2 2.4 8.7 8 1 1 9 9 9 2 Bacterial protein of unknown function (DUF948) PhageMin_Tail PF10145.4 gi|410672179|ref|YP_006924550.1| - 0.0018 17.9 14.4 0.0018 17.9 10.0 4.8 5 1 1 6 6 6 1 Phage-related minor tail protein COG2 PF06148.6 gi|410672179|ref|YP_006924550.1| - 0.038 13.8 24.9 0.44 10.4 0.8 7.8 8 1 0 8 8 8 0 COG (conserved oligomeric Golgi) complex component, COG2 BRI3BP PF14965.1 gi|410672179|ref|YP_006924550.1| - 0.073 12.4 0.0 84 2.4 0.0 4.3 4 0 0 4 4 4 0 Negative regulator of p53/TP53 MRP-S28 PF10213.4 gi|410672179|ref|YP_006924550.1| - 0.09 12.8 12.0 3.4 7.7 0.0 4.9 5 1 0 5 5 5 0 Mitochondrial ribosomal subunit protein Tetradecapep PF08187.6 gi|410672179|ref|YP_006924550.1| - 0.39 10.6 7.5 14 5.8 0.1 4.0 4 0 0 4 4 4 0 Myoactive tetradecapeptides family C1_1 PF00130.17 gi|410672181|ref|YP_006924552.1| - 3.2e-05 23.5 4.3 0.00066 19.3 1.1 2.1 2 0 0 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.2 gi|410672181|ref|YP_006924552.1| - 0.00026 20.7 3.8 0.0065 16.2 1.0 2.1 2 0 0 2 2 2 1 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|410672181|ref|YP_006924552.1| - 0.00067 19.3 2.1 0.038 13.7 0.8 2.1 2 0 0 2 2 2 1 zinc-ribbons FYVE PF01363.16 gi|410672181|ref|YP_006924552.1| - 0.012 15.4 7.8 0.047 13.5 5.4 1.7 1 1 0 1 1 1 0 FYVE zinc finger Prok-RING_1 PF14446.1 gi|410672181|ref|YP_006924552.1| - 0.018 14.7 4.9 0.68 9.7 1.4 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-AD PF07776.10 gi|410672181|ref|YP_006924552.1| - 0.034 14.1 5.3 2 8.4 0.1 2.3 1 1 0 2 2 2 0 Zinc-finger associated domain (zf-AD) DNA_RNApol_7kD PF03604.8 gi|410672181|ref|YP_006924552.1| - 0.034 13.5 5.5 0.25 10.8 1.4 2.4 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit RecR PF02132.10 gi|410672181|ref|YP_006924552.1| - 0.067 12.6 0.1 0.067 12.6 0.1 2.8 2 1 1 3 3 3 0 RecR protein XPA_N PF01286.13 gi|410672181|ref|YP_006924552.1| - 0.074 12.7 3.7 4.4 7.0 0.3 2.3 2 0 0 2 2 2 0 XPA protein N-terminal Opiods_neuropep PF01160.13 gi|410672181|ref|YP_006924552.1| - 0.075 12.8 4.4 0.14 11.9 0.7 2.6 1 1 1 2 2 2 0 Vertebrate endogenous opioids neuropeptide FAM150 PF15129.1 gi|410672181|ref|YP_006924552.1| - 0.078 12.8 2.2 0.12 12.2 0.5 1.8 2 0 0 2 2 2 0 FAM150 family Zn-ribbon_8 PF09723.5 gi|410672181|ref|YP_006924552.1| - 0.11 12.5 4.6 5.9 6.9 0.1 3.0 3 0 0 3 3 3 0 Zinc ribbon domain DUF2321 PF10083.4 gi|410672181|ref|YP_006924552.1| - 0.12 11.8 1.6 3.1 7.2 0.1 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) IBR PF01485.16 gi|410672181|ref|YP_006924552.1| - 0.16 11.8 6.1 5.7 6.9 0.0 2.4 2 1 0 2 2 2 0 IBR domain zf-TFIIB PF13453.1 gi|410672181|ref|YP_006924552.1| - 0.17 11.1 5.1 13 5.0 3.0 2.8 2 1 0 2 2 2 0 Transcription factor zinc-finger HypA PF01155.14 gi|410672181|ref|YP_006924552.1| - 0.17 11.5 3.5 2 8.1 2.4 2.0 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|410672181|ref|YP_006924552.1| - 0.2 11.3 6.1 0.18 11.5 1.8 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-C4pol PF14260.1 gi|410672181|ref|YP_006924552.1| - 0.24 11.4 3.4 1.9 8.5 0.4 2.2 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta Cytochrom_CIII PF02085.11 gi|410672181|ref|YP_006924552.1| - 0.34 11.0 3.9 0.43 10.7 2.7 1.1 1 0 0 1 1 1 0 Class III cytochrome C family TF_Zn_Ribbon PF08271.7 gi|410672181|ref|YP_006924552.1| - 0.38 10.1 4.3 3.9 6.8 1.3 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding FYDLN_acid PF09538.5 gi|410672181|ref|YP_006924552.1| - 0.44 11.1 0.2 0.44 11.1 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) zinc_ribbon_2 PF13240.1 gi|410672181|ref|YP_006924552.1| - 0.44 10.1 8.5 1.7 8.2 2.1 2.8 2 1 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|410672181|ref|YP_006924552.1| - 0.45 10.5 6.1 5.3 7.0 0.1 3.0 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-C2H2 PF00096.21 gi|410672181|ref|YP_006924552.1| - 0.5 10.8 9.8 3 8.3 1.8 2.7 2 1 0 2 2 2 0 Zinc finger, C2H2 type Auto_anti-p27 PF06677.7 gi|410672181|ref|YP_006924552.1| - 0.58 9.9 6.9 1 9.1 0.8 2.4 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rubredoxin PF00301.15 gi|410672181|ref|YP_006924552.1| - 0.64 9.9 3.4 13 5.7 0.1 2.7 3 0 0 3 3 3 0 Rubredoxin UPF0547 PF10571.4 gi|410672181|ref|YP_006924552.1| - 0.71 9.6 10.6 0.079 12.6 2.8 2.3 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Cript PF10235.4 gi|410672181|ref|YP_006924552.1| - 0.89 9.9 5.7 1.4 9.3 1.4 2.0 2 0 0 2 2 2 0 Microtubule-associated protein CRIPT DUF2072 PF09845.4 gi|410672181|ref|YP_006924552.1| - 0.94 9.4 3.6 1.1 9.2 0.3 2.0 2 0 0 2 2 2 0 Zn-ribbon containing protein (DUF2072) RNA_POL_M_15KD PF02150.11 gi|410672181|ref|YP_006924552.1| - 0.99 9.1 9.0 25 4.6 0.1 3.0 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.6 gi|410672181|ref|YP_006924552.1| - 1.3 8.6 8.5 0.84 9.2 0.4 3.0 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-UDP PF14569.1 gi|410672181|ref|YP_006924552.1| - 1.5 8.6 5.6 38 4.1 0.2 3.0 2 1 1 3 3 3 0 Zinc-binding RING-finger zf-ribbon_3 PF13248.1 gi|410672181|ref|YP_006924552.1| - 1.6 8.0 8.8 12 5.2 2.5 3.0 2 1 1 3 3 3 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|410672181|ref|YP_006924552.1| - 1.6 9.1 8.0 7.9 6.9 0.2 3.3 3 0 0 3 3 3 0 Zinc-finger double domain Prim_Zn_Ribbon PF08273.7 gi|410672181|ref|YP_006924552.1| - 2.3 8.3 0.0 2.3 8.3 0.0 2.8 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-RING_4 PF14570.1 gi|410672181|ref|YP_006924552.1| - 4.9 6.8 11.2 10 5.7 0.9 3.0 2 1 1 3 3 3 0 RING/Ubox like zinc-binding domain zf-C2H2_3 PF13878.1 gi|410672181|ref|YP_006924552.1| - 9 5.9 9.3 24 4.6 0.1 3.2 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO DDE_Tnp_1_2 PF13586.1 gi|410672182|ref|YP_006924553.1| - 1.6e-22 79.5 2.6 1.9e-21 76.0 0.2 2.0 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|410672182|ref|YP_006924553.1| - 1.1e-11 44.6 0.7 1.9e-11 43.9 0.5 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|410672182|ref|YP_006924553.1| - 0.0058 16.2 0.0 0.007 15.9 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease Acetyltransf_1 PF00583.19 gi|410672184|ref|YP_006924555.1| - 2.6e-16 59.4 0.0 4.5e-16 58.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|410672184|ref|YP_006924555.1| - 8.7e-09 35.4 0.6 2e-08 34.2 0.1 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|410672184|ref|YP_006924555.1| - 1.1e-07 31.4 0.0 1.9e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|410672184|ref|YP_006924555.1| - 1.4e-07 31.6 0.0 1.7e-07 31.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|410672184|ref|YP_006924555.1| - 6.7e-07 29.2 0.0 8.5e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|410672184|ref|YP_006924555.1| - 1.4e-05 24.9 0.1 1.7e-05 24.6 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|410672184|ref|YP_006924555.1| - 5.1e-05 23.4 0.0 5.9e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|410672184|ref|YP_006924555.1| - 0.0002 21.3 0.1 0.00024 21.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|410672184|ref|YP_006924555.1| - 0.013 15.3 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Baculo_PP31 PF05311.6 gi|410672184|ref|YP_006924555.1| - 0.095 11.9 0.3 0.15 11.3 0.2 1.3 1 0 0 1 1 1 0 Baculovirus 33KDa late protein (PP31) EF_assoc_1 PF08355.7 gi|410672186|ref|YP_006924557.1| - 0.1 11.8 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 EF hand associated Phage_Mu_F PF04233.9 gi|410672187|ref|YP_006924558.1| - 6e-05 23.5 0.6 0.00012 22.5 0.1 1.6 1 1 1 2 2 2 1 Phage Mu protein F like protein DDE_3 PF13358.1 gi|410672188|ref|YP_006924559.1| - 7.9e-25 87.3 0.5 1.7e-24 86.2 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_29 PF13551.1 gi|410672188|ref|YP_006924559.1| - 1.8e-16 60.2 0.0 5.6e-16 58.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410672188|ref|YP_006924559.1| - 2.1e-10 41.2 0.7 8.6e-10 39.2 0.0 2.4 3 0 0 3 3 3 1 Homeodomain-like domain rve PF00665.21 gi|410672188|ref|YP_006924559.1| - 5.8e-09 36.1 0.0 1.3e-08 34.9 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_33 PF13592.1 gi|410672188|ref|YP_006924559.1| - 1.5e-08 34.0 0.1 4.3e-08 32.5 0.1 1.9 1 0 0 1 1 1 1 Winged helix-turn helix DDE_1 PF03184.14 gi|410672188|ref|YP_006924559.1| - 1.6e-07 30.7 0.2 1.6e-07 30.7 0.1 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_23 PF13384.1 gi|410672188|ref|YP_006924559.1| - 3.3e-06 26.5 0.1 1e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|410672188|ref|YP_006924559.1| - 2.7e-05 24.0 0.0 6.4e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_21 PF13276.1 gi|410672188|ref|YP_006924559.1| - 0.09 12.7 0.1 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 HTH-like domain Peptidase_M23 PF01551.17 gi|410672189|ref|YP_006924560.1| - 8.2e-18 64.2 0.0 1.5e-15 56.9 0.0 2.2 1 1 0 1 1 1 1 Peptidase family M23 RnfC_N PF13375.1 gi|410672189|ref|YP_006924560.1| - 0.016 14.9 0.0 0.24 11.1 0.0 2.1 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain DUF4098 PF13345.1 gi|410672190|ref|YP_006924561.1| - 7.1e-12 45.1 29.8 8.6e-08 32.0 6.0 5.0 3 1 1 4 4 4 4 Domain of unknown function (DUF4098) Ribosomal_S11 PF00411.14 gi|410672190|ref|YP_006924561.1| - 1.6 8.9 4.6 2.7 8.2 0.0 2.8 2 1 0 2 2 2 0 Ribosomal protein S11 DUF4177 PF13783.1 gi|410672191|ref|YP_006924562.1| - 1.5e-07 30.9 2.4 2.5e-07 30.2 1.7 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4177) DUF2812 PF11193.3 gi|410672191|ref|YP_006924562.1| - 0.038 14.1 0.3 0.04 14.0 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2812) YcfA PF07927.7 gi|410672192|ref|YP_006924563.1| - 1.5e-14 53.5 0.1 1.9e-14 53.3 0.1 1.1 1 0 0 1 1 1 1 YcfA-like protein S4 PF01479.20 gi|410672192|ref|YP_006924563.1| - 0.1 12.0 0.0 0.62 9.5 0.0 2.2 3 0 0 3 3 3 0 S4 domain UPF0150 PF03681.10 gi|410672193|ref|YP_006924564.1| - 1.4e-15 56.5 0.2 2.1e-15 56.0 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF1902 PF08972.6 gi|410672193|ref|YP_006924564.1| - 1.3e-05 24.6 0.0 1.4e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) TrmB PF01978.14 gi|410672194|ref|YP_006924565.1| - 0.00022 20.8 0.0 0.00062 19.4 0.0 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|410672194|ref|YP_006924565.1| - 0.0064 16.7 0.1 0.013 15.8 0.0 1.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|410672194|ref|YP_006924565.1| - 0.0088 16.1 0.0 0.017 15.2 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator HTH_37 PF13744.1 gi|410672194|ref|YP_006924565.1| - 0.012 15.4 0.1 0.016 15.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|410672194|ref|YP_006924565.1| - 0.027 14.5 0.1 0.091 12.7 0.0 1.8 1 1 1 2 2 2 0 Winged helix DNA-binding domain DUF387 PF04079.11 gi|410672194|ref|YP_006924565.1| - 0.042 13.2 0.1 0.053 12.8 0.1 1.2 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) HTH_5 PF01022.15 gi|410672194|ref|YP_006924565.1| - 0.054 13.1 0.0 0.16 11.6 0.0 1.7 1 1 1 2 2 2 0 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|410672194|ref|YP_006924565.1| - 0.069 12.6 0.0 0.1 12.1 0.0 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit Integrin_b_cyt PF08725.6 gi|410672194|ref|YP_006924565.1| - 0.1 11.9 0.1 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Integrin beta cytoplasmic domain Penicillinase_R PF03965.11 gi|410672194|ref|YP_006924565.1| - 0.11 12.6 1.3 11 6.1 0.1 2.3 1 1 1 2 2 2 0 Penicillinase repressor NosD PF05048.8 gi|410672195|ref|YP_006924566.1| - 2.5e-30 105.3 82.2 6.9e-11 41.7 14.7 4.2 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|410672195|ref|YP_006924566.1| - 2.7e-28 98.6 87.2 8e-18 64.6 24.3 4.4 2 1 1 4 4 4 4 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|410672195|ref|YP_006924566.1| - 1.8e-05 25.0 21.0 1.8e-05 25.0 14.5 3.9 1 1 1 3 3 3 2 Pectate lyase superfamily protein Ribonucleas_3_3 PF14622.1 gi|410672196|ref|YP_006924567.1| - 7.6e-06 25.9 0.0 1.3e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.21 gi|410672196|ref|YP_006924567.1| - 0.0032 17.9 0.1 0.015 15.7 0.1 2.0 1 1 0 1 1 1 1 Ribonuclease III domain dsrm PF00035.20 gi|410672196|ref|YP_006924567.1| - 0.0054 17.2 0.1 1.1 9.8 0.0 2.8 2 1 0 2 2 2 1 Double-stranded RNA binding motif DUF771 PF05595.6 gi|410672197|ref|YP_006924568.1| - 0.038 13.9 0.3 0.048 13.5 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF771) HTH_20 PF12840.2 gi|410672198|ref|YP_006924569.1| - 0.043 13.6 0.0 0.075 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|410672198|ref|YP_006924569.1| - 0.057 13.7 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|410672198|ref|YP_006924569.1| - 0.073 12.8 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DDE_Tnp_1 PF01609.16 gi|410672199|ref|YP_006924570.1| - 8.3e-06 25.4 0.4 1.3e-05 24.8 0.3 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_IS1 PF03400.8 gi|410672200|ref|YP_006924571.1| - 2.9e-08 33.8 0.1 3.2e-08 33.7 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase DDE_3 PF13358.1 gi|410672202|ref|YP_006924573.1| - 2e-23 82.7 0.1 2.8e-23 82.2 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|410672202|ref|YP_006924573.1| - 1.2e-09 38.3 0.0 2.1e-09 37.4 0.0 1.4 2 0 0 2 2 2 1 Integrase core domain DDE_1 PF03184.14 gi|410672202|ref|YP_006924573.1| - 2.2e-08 33.5 0.1 2.5e-08 33.3 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|410672202|ref|YP_006924573.1| - 0.026 13.2 0.0 0.029 13.1 0.0 1.2 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain Ribosomal_S2 PF00318.15 gi|410672202|ref|YP_006924573.1| - 0.032 13.4 2.0 0.36 10.0 1.4 2.0 1 1 0 1 1 1 0 Ribosomal protein S2 DUF3800 PF12686.2 gi|410672202|ref|YP_006924573.1| - 0.061 12.9 0.1 0.067 12.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3800) HTH_29 PF13551.1 gi|410672203|ref|YP_006924574.1| - 2e-16 60.1 0.0 3.3e-16 59.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410672203|ref|YP_006924574.1| - 2.6e-10 40.9 0.3 5.5e-10 39.9 0.1 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|410672203|ref|YP_006924574.1| - 5.9e-09 35.3 0.4 1.2e-08 34.3 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|410672203|ref|YP_006924574.1| - 1.4e-06 27.7 0.1 5.3e-06 25.8 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|410672203|ref|YP_006924574.1| - 2.6e-05 24.1 0.0 6.3e-05 22.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_21 PF13276.1 gi|410672203|ref|YP_006924574.1| - 0.031 14.2 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 HTH-like domain DUF2975 PF11188.3 gi|410672204|ref|YP_006924575.1| - 0.0058 16.3 0.0 3.8 7.2 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2975) DUF3006 PF11213.3 gi|410672204|ref|YP_006924575.1| - 0.07 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3006) Tubulin_2 PF13809.1 gi|410672205|ref|YP_006924576.1| - 3.8e-13 49.0 0.4 3.8e-13 49.0 0.3 2.5 2 1 0 2 2 2 1 Tubulin like Tubulin PF00091.20 gi|410672205|ref|YP_006924576.1| - 2.1e-06 27.7 0.5 5.8e-05 23.0 0.0 3.0 3 0 0 3 3 3 1 Tubulin/FtsZ family, GTPase domain AAA_22 PF13401.1 gi|410672206|ref|YP_006924577.1| - 0.0035 17.4 0.3 0.054 13.6 0.1 2.5 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|410672206|ref|YP_006924577.1| - 0.0099 15.5 1.2 0.0099 15.5 0.8 2.4 1 1 1 2 2 2 1 Archaeal ATPase PduV-EutP PF10662.4 gi|410672206|ref|YP_006924577.1| - 0.058 12.8 0.4 0.71 9.3 0.0 2.8 3 2 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation AAA PF00004.24 gi|410672206|ref|YP_006924577.1| - 0.081 13.1 0.1 0.92 9.7 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|410672206|ref|YP_006924577.1| - 0.096 13.5 0.1 1.7 9.4 0.1 2.4 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|410672206|ref|YP_006924577.1| - 0.1 12.4 3.4 0.19 11.6 0.0 2.9 2 1 3 5 5 5 0 AAA domain AAA_25 PF13481.1 gi|410672206|ref|YP_006924577.1| - 0.17 11.2 0.0 0.55 9.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain Yip1 PF04893.12 gi|410672206|ref|YP_006924577.1| - 2.1 7.8 24.7 74 2.7 17.1 2.2 1 1 0 1 1 1 0 Yip1 domain PKD PF00801.15 gi|410672207|ref|YP_006924578.1| - 7.1e-08 32.0 0.7 1.9e-07 30.7 0.5 1.6 1 0 0 1 1 1 1 PKD domain MCH PF02289.11 gi|410672208|ref|YP_006924579.1| - 1.3e-150 500.6 0.6 1.5e-150 500.5 0.4 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Response_reg PF00072.19 gi|410672209|ref|YP_006924580.1| - 1.9e-26 92.2 0.4 4.5e-26 91.0 0.3 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|410672209|ref|YP_006924580.1| - 3.6e-21 74.9 0.0 6.3e-21 74.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|410672209|ref|YP_006924580.1| - 1.1e-10 41.4 0.0 1.8e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|410672209|ref|YP_006924580.1| - 5.1e-10 39.6 0.0 1.2e-09 38.4 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|410672209|ref|YP_006924580.1| - 0.0001 22.0 0.0 0.00024 20.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|410672209|ref|YP_006924580.1| - 0.00013 21.9 0.2 0.00027 20.8 0.1 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|410672209|ref|YP_006924580.1| - 0.00024 20.7 0.0 0.00053 19.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|410672209|ref|YP_006924580.1| - 0.0013 18.5 0.0 0.0022 17.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|410672209|ref|YP_006924580.1| - 0.0014 18.2 0.1 0.0046 16.6 0.0 1.8 2 0 0 2 2 2 1 GHKL domain PAS_8 PF13188.1 gi|410672209|ref|YP_006924580.1| - 0.11 12.3 0.0 0.35 10.8 0.0 1.8 1 0 0 1 1 1 0 PAS domain Cyt-b5 PF00173.23 gi|410672212|ref|YP_006924583.1| - 6.9e-09 35.3 0.3 9.3e-09 34.9 0.2 1.3 1 0 0 1 1 1 1 Cytochrome b5-like Heme/Steroid binding domain RseA_N PF03872.8 gi|410672212|ref|YP_006924583.1| - 0.03 14.6 0.2 0.055 13.7 0.1 1.3 1 0 0 1 1 1 0 Anti sigma-E protein RseA, N-terminal domain APP_N PF02177.11 gi|410672213|ref|YP_006924584.1| - 0.11 12.3 0.9 5.2 7.0 0.1 2.0 1 1 1 2 2 2 0 Amyloid A4 N-terminal heparin-binding Inhibitor_I42 PF09394.5 gi|410672214|ref|YP_006924585.1| - 3.6e-31 107.3 0.2 6.1e-31 106.6 0.1 1.3 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 E1-E2_ATPase PF00122.15 gi|410672215|ref|YP_006924586.1| - 4.6e-52 176.3 1.3 4.6e-52 176.3 0.9 2.2 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|410672215|ref|YP_006924586.1| - 5.3e-44 151.2 0.1 1e-43 150.2 0.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|410672215|ref|YP_006924586.1| - 5.4e-18 65.8 0.0 1.2e-17 64.6 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|410672215|ref|YP_006924586.1| - 1.5e-06 28.0 4.1 0.0036 16.9 0.6 2.5 2 1 0 3 3 3 2 haloacid dehalogenase-like hydrolase DUF2627 PF11118.3 gi|410672215|ref|YP_006924586.1| - 0.31 11.1 2.2 1.4 9.0 1.5 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2627) FhuF_C PF11575.3 gi|410672216|ref|YP_006924587.1| - 0.0091 15.6 0.8 2.8 7.6 0.1 2.2 2 0 0 2 2 2 2 FhuF 2Fe-2S C-terminal domain zf-FPG_IleRS PF06827.9 gi|410672216|ref|YP_006924587.1| - 0.021 14.4 0.9 0.39 10.4 0.0 2.1 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DZR PF12773.2 gi|410672216|ref|YP_006924587.1| - 0.031 14.1 1.8 0.086 12.6 1.2 1.7 1 1 0 1 1 1 0 Double zinc ribbon RRN7 PF11781.3 gi|410672216|ref|YP_006924587.1| - 0.033 13.6 0.5 1.3 8.6 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Zn-ribbon_8 PF09723.5 gi|410672216|ref|YP_006924587.1| - 0.038 13.9 1.8 0.053 13.4 1.3 1.2 1 0 0 1 1 1 0 Zinc ribbon domain ADK_lid PF05191.9 gi|410672216|ref|YP_006924587.1| - 0.052 13.2 3.7 0.13 11.9 2.6 1.6 1 1 0 1 1 1 0 Adenylate kinase, active site lid OrfB_Zn_ribbon PF07282.6 gi|410672216|ref|YP_006924587.1| - 0.059 13.0 2.4 0.079 12.6 1.7 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-IS66 PF13005.2 gi|410672216|ref|YP_006924587.1| - 0.096 12.6 3.1 0.59 10.1 0.3 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 HypA PF01155.14 gi|410672216|ref|YP_006924587.1| - 0.18 11.5 2.4 0.18 11.5 1.7 1.0 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc-ribbons_6 PF07191.7 gi|410672216|ref|YP_006924587.1| - 0.19 11.5 1.3 0.28 11.0 0.9 1.3 1 1 0 1 1 1 0 zinc-ribbons zf-HIT PF04438.11 gi|410672216|ref|YP_006924587.1| - 0.25 10.9 1.8 7.8 6.2 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger DNA_RNApol_7kD PF03604.8 gi|410672216|ref|YP_006924587.1| - 0.32 10.5 3.4 1.3 8.5 2.3 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Prok-RING_1 PF14446.1 gi|410672216|ref|YP_006924587.1| - 0.39 10.4 4.5 2.2 8.0 3.2 1.9 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 LRV_FeS PF05484.6 gi|410672216|ref|YP_006924587.1| - 0.43 10.1 2.1 2 8.0 0.1 2.0 1 1 1 2 2 2 0 LRV protein FeS4 cluster A2L_zn_ribbon PF08792.5 gi|410672216|ref|YP_006924587.1| - 0.48 9.9 3.7 1.4 8.5 0.5 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|410672216|ref|YP_006924587.1| - 0.65 9.5 3.7 0.65 9.5 0.1 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-CXXC PF02008.15 gi|410672216|ref|YP_006924587.1| - 3.4 7.5 5.9 34 4.3 4.1 2.0 1 1 0 1 1 1 0 CXXC zinc finger domain DUF377 PF04041.8 gi|410672217|ref|YP_006924588.1| - 5.8e-62 209.1 0.0 7.2e-62 208.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF377) Glyco_hydro_43 PF04616.9 gi|410672217|ref|YP_006924588.1| - 0.0046 16.0 0.2 0.17 10.9 0.0 2.2 2 0 0 2 2 2 2 Glycosyl hydrolases family 43 Polysacc_synt PF01943.12 gi|410672218|ref|YP_006924589.1| - 3.7e-33 114.9 27.6 3.7e-33 114.9 19.1 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|410672218|ref|YP_006924589.1| - 8.2e-19 68.0 19.2 8.2e-19 68.0 13.3 2.8 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.13 gi|410672218|ref|YP_006924589.1| - 2.6e-15 56.4 38.1 1.5e-11 44.1 10.9 3.5 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|410672218|ref|YP_006924589.1| - 3.1e-13 49.7 21.0 3.1e-13 49.7 14.5 3.8 3 1 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|410672218|ref|YP_006924589.1| - 1.3e-07 30.3 36.5 2.3e-07 29.6 25.3 1.4 1 0 0 1 1 1 1 MviN-like protein Glycos_transf_1 PF00534.15 gi|410672219|ref|YP_006924590.1| - 1.3e-15 57.2 0.0 2.3e-15 56.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|410672219|ref|YP_006924590.1| - 4.1e-15 56.1 0.0 7e-15 55.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF1680 PF07944.7 gi|410672219|ref|YP_006924590.1| - 1.1e-06 27.3 1.1 6.3e-05 21.4 0.8 2.4 1 1 1 2 2 2 2 Putative glycosyl hydrolase of unknown function (DUF1680) Glyco_hydro_88 PF07470.8 gi|410672219|ref|YP_006924590.1| - 5.8e-06 25.5 0.9 2.1e-05 23.7 0.2 2.0 2 1 0 2 2 2 1 Glycosyl Hydrolase Family 88 C5-epim_C PF06662.8 gi|410672219|ref|YP_006924590.1| - 1.2e-05 24.6 1.0 0.01 15.1 0.1 2.4 2 0 0 2 2 2 2 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_76 PF03663.9 gi|410672219|ref|YP_006924590.1| - 0.0029 17.0 4.4 0.007 15.7 2.7 1.8 1 1 1 2 2 2 2 Glycosyl hydrolase family 76 Prenyltrans_2 PF13249.1 gi|410672219|ref|YP_006924590.1| - 0.0051 17.1 0.7 1.9 8.9 0.0 3.3 2 1 2 4 4 4 1 Prenyltransferase-like Glyco_hydro_47 PF01532.15 gi|410672219|ref|YP_006924590.1| - 0.0093 14.6 0.3 1.4 7.4 0.0 2.3 1 1 0 2 2 2 2 Glycosyl hydrolase family 47 GlcNAc_2-epim PF07221.6 gi|410672219|ref|YP_006924590.1| - 0.013 14.4 0.0 0.058 12.3 0.0 1.9 1 1 0 1 1 1 0 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) DUF377 PF04041.8 gi|410672220|ref|YP_006924591.1| - 8.1e-63 212.0 0.0 9.6e-63 211.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF377) Glyco_hydro_43 PF04616.9 gi|410672220|ref|YP_006924591.1| - 0.023 13.7 0.1 4.9 6.1 0.0 2.2 2 0 0 2 2 2 0 Glycosyl hydrolases family 43 MannoseP_isomer PF01050.13 gi|410672221|ref|YP_006924592.1| - 2.2e-33 114.9 0.5 5.1e-33 113.8 0.3 1.7 1 1 0 1 1 1 1 Mannose-6-phosphate isomerase Glycos_transf_1 PF00534.15 gi|410672221|ref|YP_006924592.1| - 1.2e-26 93.2 0.1 2e-26 92.4 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|410672221|ref|YP_006924592.1| - 2.3e-15 56.9 0.0 1e-14 54.8 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Cupin_2 PF07883.6 gi|410672221|ref|YP_006924592.1| - 9e-15 53.9 0.1 1.8e-14 52.9 0.1 1.5 1 0 0 1 1 1 1 Cupin domain Glyco_trans_1_2 PF13524.1 gi|410672221|ref|YP_006924592.1| - 1.5e-07 31.5 0.0 3.7e-07 30.3 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|410672221|ref|YP_006924592.1| - 4.8e-06 26.4 0.0 1.2e-05 25.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Cupin_1 PF00190.17 gi|410672221|ref|YP_006924592.1| - 0.00021 20.7 0.0 0.00044 19.7 0.0 1.4 1 0 0 1 1 1 1 Cupin GPI PF06560.6 gi|410672221|ref|YP_006924592.1| - 0.016 14.2 0.0 0.04 12.9 0.0 1.6 1 0 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) Auxin_BP PF02041.11 gi|410672221|ref|YP_006924592.1| - 0.017 14.5 0.3 0.075 12.4 0.1 2.1 2 1 0 2 2 2 0 Auxin binding protein Ectoine_synth PF06339.7 gi|410672221|ref|YP_006924592.1| - 0.074 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Ectoine synthase CENP-C_C PF11699.3 gi|410672221|ref|YP_006924592.1| - 0.079 12.9 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Mif2/CENP-C like CMD PF02627.15 gi|410672223|ref|YP_006924594.1| - 0.00062 19.5 0.0 0.00085 19.1 0.0 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family EamA PF00892.15 gi|410672224|ref|YP_006924595.1| - 7.4e-29 100.3 36.3 7.1e-15 55.1 9.2 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|410672224|ref|YP_006924595.1| - 3.1e-05 24.1 29.4 0.00024 21.2 7.4 3.0 2 1 1 3 3 3 2 Multidrug resistance efflux transporter Rsm22 PF09243.5 gi|410672227|ref|YP_006924598.1| - 3.3e-11 42.7 0.0 8.1e-11 41.4 0.0 1.6 1 1 1 2 2 2 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_31 PF13847.1 gi|410672227|ref|YP_006924598.1| - 2.8e-08 33.4 0.0 5.9e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|410672227|ref|YP_006924598.1| - 6.9e-06 25.8 0.0 1.3e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410672227|ref|YP_006924598.1| - 0.0005 20.6 0.0 0.00097 19.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|410672227|ref|YP_006924598.1| - 0.0043 17.5 0.0 0.01 16.2 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|410672227|ref|YP_006924598.1| - 0.01 16.2 0.1 0.078 13.4 0.0 2.3 2 1 0 2 2 2 0 Methyltransferase domain CheR PF01739.13 gi|410672227|ref|YP_006924598.1| - 0.024 13.9 0.4 0.29 10.4 0.0 2.4 2 1 0 2 2 2 0 CheR methyltransferase, SAM binding domain Methyltransf_25 PF13649.1 gi|410672227|ref|YP_006924598.1| - 0.037 14.3 0.0 0.11 12.8 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|410672227|ref|YP_006924598.1| - 0.041 13.9 0.0 0.062 13.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain B12-binding PF02310.14 gi|410672228|ref|YP_006924599.1| - 8e-19 67.6 0.1 1.5e-18 66.8 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|410672228|ref|YP_006924599.1| - 8.9e-14 51.2 0.7 1.9e-13 50.2 0.5 1.6 1 0 0 1 1 1 1 B12 binding domain DNA_pol3_gamma3 PF12169.3 gi|410672228|ref|YP_006924599.1| - 0.0048 16.6 0.5 0.0098 15.6 0.3 1.4 1 0 0 1 1 1 1 DNA polymerase III subunits gamma and tau domain III Rep_fac_C PF08542.6 gi|410672228|ref|YP_006924599.1| - 0.12 12.3 0.0 2.2 8.3 0.0 2.7 2 0 0 2 2 2 0 Replication factor C C-terminal domain PAS_9 PF13426.1 gi|410672229|ref|YP_006924600.1| - 2.2e-61 204.6 1.7 4.5e-12 46.2 0.0 6.2 6 0 0 6 6 6 6 PAS domain PAS PF00989.19 gi|410672229|ref|YP_006924600.1| - 1.8e-50 169.4 0.3 9.4e-09 35.0 0.0 6.3 6 0 0 6 6 6 6 PAS fold PAS_4 PF08448.5 gi|410672229|ref|YP_006924600.1| - 3.9e-36 123.4 0.0 2e-06 27.8 0.0 6.2 6 0 0 6 6 6 6 PAS fold PAS_8 PF13188.1 gi|410672229|ref|YP_006924600.1| - 6.5e-33 111.4 0.8 1.3e-06 28.0 0.0 5.5 5 0 0 5 5 5 5 PAS domain PAS_3 PF08447.6 gi|410672229|ref|YP_006924600.1| - 5.8e-32 109.6 0.0 2.4e-15 56.4 0.2 5.5 6 0 0 6 6 6 4 PAS fold GAF_2 PF13185.1 gi|410672229|ref|YP_006924600.1| - 1.3e-10 41.9 0.0 2.6e-10 40.9 0.0 1.5 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|410672229|ref|YP_006924600.1| - 2.3e-08 34.2 0.0 4.5e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.2 gi|410672229|ref|YP_006924600.1| - 2.7e-06 27.3 0.7 3.1 7.8 0.0 5.8 5 0 0 5 5 5 2 PAS fold PAS_10 PF13596.1 gi|410672229|ref|YP_006924600.1| - 4.2e-06 26.9 0.0 0.035 14.3 0.0 3.4 3 0 0 3 3 3 2 PAS domain GAF PF01590.21 gi|410672229|ref|YP_006924600.1| - 0.043 13.9 0.0 0.11 12.6 0.0 1.7 1 0 0 1 1 1 0 GAF domain B12-binding PF02310.14 gi|410672231|ref|YP_006924602.1| - 9.2e-18 64.2 0.3 1.9e-17 63.2 0.2 1.5 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|410672231|ref|YP_006924602.1| - 1.5e-15 57.0 0.3 3.2e-15 55.9 0.2 1.6 1 0 0 1 1 1 1 B12 binding domain BMC PF00936.14 gi|410672231|ref|YP_006924602.1| - 0.12 12.0 2.4 1.4 8.6 0.0 2.6 2 1 0 2 2 2 0 BMC domain MtaB PF12176.3 gi|410672232|ref|YP_006924603.1| - 8.3e-236 782.7 5.5 9.4e-236 782.5 3.8 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit Lon_C PF05362.8 gi|410672233|ref|YP_006924604.1| - 3.2e-13 49.4 4.3 3.2e-13 49.4 1.8 1.7 1 1 1 2 2 2 1 Lon protease (S16) C-terminal proteolytic domain 3-HAO PF06052.7 gi|410672233|ref|YP_006924604.1| - 0.12 11.8 0.1 0.36 10.2 0.0 1.8 3 0 0 3 3 3 0 3-hydroxyanthranilic acid dioxygenase Methyltransf_11 PF08241.7 gi|410672234|ref|YP_006924605.1| - 4.5e-16 59.1 0.0 1.1e-15 57.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|410672234|ref|YP_006924605.1| - 6.6e-13 48.5 0.0 1.5e-12 47.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410672234|ref|YP_006924605.1| - 3.3e-12 46.9 0.1 8.3e-12 45.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|410672234|ref|YP_006924605.1| - 7.4e-11 41.6 0.0 2.1e-10 40.1 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|410672234|ref|YP_006924605.1| - 9.2e-10 38.8 0.0 2.1e-09 37.6 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|410672234|ref|YP_006924605.1| - 5.9e-07 29.3 0.0 9.5e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|410672234|ref|YP_006924605.1| - 6e-07 29.8 0.0 9.3e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|410672234|ref|YP_006924605.1| - 1.3e-06 28.4 0.0 5.1e-06 26.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|410672234|ref|YP_006924605.1| - 2.3e-06 27.0 0.0 3.6e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|410672234|ref|YP_006924605.1| - 9.5e-05 21.5 0.0 0.00024 20.2 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase PCMT PF01135.14 gi|410672234|ref|YP_006924605.1| - 0.00016 21.2 0.0 0.00025 20.6 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_24 PF13578.1 gi|410672234|ref|YP_006924605.1| - 0.00057 20.6 0.0 0.0011 19.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|410672234|ref|YP_006924605.1| - 0.003 16.6 0.0 0.0041 16.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|410672234|ref|YP_006924605.1| - 0.0041 16.2 0.0 0.0046 16.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_PK PF05891.7 gi|410672234|ref|YP_006924605.1| - 0.013 14.8 0.0 0.018 14.3 0.0 1.2 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase TehB PF03848.9 gi|410672234|ref|YP_006924605.1| - 0.027 13.6 0.0 0.044 12.9 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB DUF938 PF06080.7 gi|410672234|ref|YP_006924605.1| - 0.029 13.9 0.0 0.043 13.3 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_16 PF10294.4 gi|410672234|ref|YP_006924605.1| - 0.033 13.6 0.0 0.053 12.9 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase UPF0020 PF01170.13 gi|410672234|ref|YP_006924605.1| - 0.071 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Rieske PF00355.21 gi|410672235|ref|YP_006924606.1| - 7.9e-18 63.8 0.0 9.1e-18 63.6 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|410672235|ref|YP_006924606.1| - 1.8e-11 43.6 0.0 2.8e-11 43.0 0.0 1.3 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain BBS2_Mid PF14783.1 gi|410672235|ref|YP_006924606.1| - 0.11 12.2 0.0 0.15 11.8 0.0 1.3 1 1 0 1 1 1 0 Ciliary BBSome complex subunit 2, middle region EXS PF03124.9 gi|410672236|ref|YP_006924607.1| - 0.041 12.9 0.1 0.041 12.9 0.1 1.0 1 0 0 1 1 1 0 EXS family DEAD PF00270.24 gi|410672237|ref|YP_006924608.1| - 2.2e-53 180.1 0.2 5.6e-53 178.8 0.1 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|410672237|ref|YP_006924608.1| - 1.2e-27 95.6 0.1 4e-27 93.8 0.1 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|410672237|ref|YP_006924608.1| - 2.6e-05 24.1 0.0 7.2e-05 22.7 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|410672237|ref|YP_006924608.1| - 0.0005 19.7 0.3 0.33 10.7 0.0 3.5 4 0 0 4 4 4 1 Part of AAA domain Helicase_RecD PF05127.9 gi|410672237|ref|YP_006924608.1| - 0.00064 19.4 0.1 0.0047 16.5 0.0 2.2 2 0 0 2 2 2 1 Helicase DUF1253 PF06862.7 gi|410672237|ref|YP_006924608.1| - 0.0007 18.1 0.2 0.0065 14.9 0.0 2.4 2 1 1 3 3 3 1 Protein of unknown function (DUF1253) Helicase_C_2 PF13307.1 gi|410672237|ref|YP_006924608.1| - 0.0011 18.9 0.0 0.042 13.8 0.0 2.3 2 0 0 2 2 2 1 Helicase C-terminal domain AAA_30 PF13604.1 gi|410672237|ref|YP_006924608.1| - 0.0019 17.7 0.0 0.0046 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain CMS1 PF14617.1 gi|410672237|ref|YP_006924608.1| - 0.005 15.9 0.1 0.018 14.1 0.0 1.9 2 0 0 2 2 2 1 U3-containing 90S pre-ribosomal complex subunit Rsd_AlgQ PF04353.8 gi|410672237|ref|YP_006924608.1| - 0.085 12.5 2.1 7.7 6.2 0.1 2.4 2 0 0 2 2 2 0 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ eIF-1a PF01176.14 gi|410672238|ref|YP_006924609.1| - 1.9e-18 65.6 0.3 2.2e-18 65.4 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF3891 PF13030.1 gi|410672238|ref|YP_006924609.1| - 0.09 12.2 0.0 0.1 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3891) TRAM PF01938.15 gi|410672239|ref|YP_006924610.1| - 1.8e-16 59.6 1.0 2e-16 59.4 0.7 1.1 1 0 0 1 1 1 1 TRAM domain LT-IIB PF06453.6 gi|410672239|ref|YP_006924610.1| - 0.053 13.1 0.0 0.054 13.1 0.0 1.0 1 0 0 1 1 1 0 Type II heat-labile enterotoxin , B subunit (LT-IIB) NAPRTase PF04095.11 gi|410672240|ref|YP_006924611.1| - 2.2e-55 187.6 0.0 2.7e-55 187.3 0.0 1.1 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family HTH_5 PF01022.15 gi|410672241|ref|YP_006924612.1| - 5.7e-06 25.8 0.1 1.2e-05 24.8 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|410672241|ref|YP_006924612.1| - 6.3e-06 25.8 0.0 1.4e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF217 PF02697.9 gi|410672241|ref|YP_006924612.1| - 0.0028 17.8 2.8 0.015 15.5 0.1 2.9 3 0 0 3 3 3 1 Uncharacterized ACR, COG1753 GED PF02212.13 gi|410672241|ref|YP_006924612.1| - 0.0054 16.6 2.8 0.011 15.5 1.9 1.6 1 0 0 1 1 1 1 Dynamin GTPase effector domain HxlR PF01638.12 gi|410672241|ref|YP_006924612.1| - 0.0061 16.1 0.2 0.035 13.7 0.0 2.3 2 0 0 2 2 2 1 HxlR-like helix-turn-helix HTH_45 PF14947.1 gi|410672241|ref|YP_006924612.1| - 0.0073 16.0 0.4 0.019 14.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix Sulfolobus_pRN PF05584.6 gi|410672241|ref|YP_006924612.1| - 0.014 15.3 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_24 PF13412.1 gi|410672241|ref|YP_006924612.1| - 0.016 14.5 0.1 0.053 12.9 0.1 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rio2_N PF09202.6 gi|410672241|ref|YP_006924612.1| - 0.053 13.5 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Rio2, N-terminal MgtE_N PF03448.12 gi|410672241|ref|YP_006924612.1| - 0.063 13.6 0.6 5.5 7.3 0.0 2.7 2 1 1 3 3 3 0 MgtE intracellular N domain HTH_34 PF13601.1 gi|410672241|ref|YP_006924612.1| - 0.072 13.1 0.1 0.39 10.7 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain FHIPEP PF00771.15 gi|410672241|ref|YP_006924612.1| - 0.11 10.7 1.2 0.14 10.4 0.8 1.1 1 0 0 1 1 1 0 FHIPEP family DUF1664 PF07889.7 gi|410672243|ref|YP_006924614.1| - 0.024 14.4 3.0 0.024 14.4 2.1 3.8 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) DUF3072 PF11272.3 gi|410672243|ref|YP_006924614.1| - 0.046 13.3 0.3 0.11 12.1 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3072) DUF2024 PF09630.5 gi|410672243|ref|YP_006924614.1| - 0.1 12.3 0.8 0.31 10.7 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF2024) Tropomyosin_1 PF12718.2 gi|410672243|ref|YP_006924614.1| - 0.22 11.3 45.9 0.038 13.8 16.1 3.1 1 1 2 3 3 3 0 Tropomyosin like Scaffolding_pro PF11418.3 gi|410672243|ref|YP_006924614.1| - 1.2 9.4 24.4 0.091 13.0 4.4 3.8 3 1 1 4 4 4 0 Phi29 scaffolding protein Fez1 PF06818.10 gi|410672243|ref|YP_006924614.1| - 1.7 8.6 35.2 0.31 11.0 12.1 2.7 1 1 1 2 2 2 0 Fez1 Securin PF04856.8 gi|410672243|ref|YP_006924614.1| - 2.4 7.7 10.0 1.8 8.2 1.5 2.5 1 1 0 2 2 2 0 Securin sister-chromatid separation inhibitor Unstab_antitox PF09720.5 gi|410672243|ref|YP_006924614.1| - 3.2 7.5 10.0 14 5.4 0.1 3.8 3 0 0 3 3 3 0 Putative addiction module component Mod_r PF07200.8 gi|410672243|ref|YP_006924614.1| - 4.3 7.2 39.9 0.47 10.3 2.4 3.8 1 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Atg14 PF10186.4 gi|410672243|ref|YP_006924614.1| - 7.1 5.4 43.4 0.33 9.8 11.1 3.3 1 1 2 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 OmpH PF03938.9 gi|410672243|ref|YP_006924614.1| - 7.5 6.4 34.3 0.82 9.5 6.9 3.4 1 1 2 3 3 3 0 Outer membrane protein (OmpH-like) MtrG PF04210.8 gi|410672243|ref|YP_006924614.1| - 8 6.2 10.4 1.9 8.2 0.4 3.7 3 1 1 4 4 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G HAMP PF00672.20 gi|410672244|ref|YP_006924615.1| - 2.4e-07 30.8 0.7 4.4e-07 29.9 0.0 1.8 2 0 0 2 2 2 1 HAMP domain Cache_1 PF02743.13 gi|410672244|ref|YP_006924615.1| - 0.0029 17.1 0.0 0.0097 15.4 0.0 1.9 1 0 0 1 1 1 1 Cache domain Cache_3 PF14827.1 gi|410672244|ref|YP_006924615.1| - 0.092 12.6 0.0 0.16 11.8 0.0 1.5 1 1 0 1 1 1 0 Sensory domain of two-component sensor kinase Tbf5 PF06331.7 gi|410672247|ref|YP_006924618.1| - 0.12 12.2 0.0 0.27 11.0 0.0 1.6 2 0 0 2 2 2 0 Transcription factor TFIIH complex subunit Tfb5 Cache_2 PF08269.6 gi|410672248|ref|YP_006924619.1| - 5.9e-30 103.0 0.2 3.3e-09 36.6 0.0 3.3 3 0 0 3 3 3 3 Cache domain Cache_3 PF14827.1 gi|410672248|ref|YP_006924619.1| - 0.063 13.1 0.0 8.4 6.3 0.0 3.3 2 1 2 4 4 4 0 Sensory domain of two-component sensor kinase Hexapep_2 PF14602.1 gi|410672249|ref|YP_006924620.1| - 8.2e-17 60.4 8.1 1.2e-11 43.9 0.4 3.5 3 1 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.19 gi|410672249|ref|YP_006924620.1| - 3.1e-14 51.7 14.1 4.4e-12 44.9 1.2 4.4 4 1 0 4 4 4 2 Bacterial transferase hexapeptide (six repeats) zinc-ribbons_6 PF07191.7 gi|410672250|ref|YP_006924621.1| - 0.014 15.1 0.3 0.016 14.9 0.2 1.1 1 0 0 1 1 1 0 zinc-ribbons RecR PF02132.10 gi|410672251|ref|YP_006924622.1| - 0.0008 18.7 3.8 0.0075 15.6 0.2 2.1 1 1 1 2 2 2 1 RecR protein DZR PF12773.2 gi|410672251|ref|YP_006924622.1| - 0.026 14.3 3.1 0.031 14.0 2.1 1.1 1 0 0 1 1 1 0 Double zinc ribbon FYVE PF01363.16 gi|410672251|ref|YP_006924622.1| - 0.043 13.7 3.1 0.042 13.7 2.2 1.1 1 0 0 1 1 1 0 FYVE zinc finger Flavodoxin_3 PF12641.2 gi|410672251|ref|YP_006924622.1| - 0.072 12.5 0.0 0.072 12.5 0.0 1.1 1 0 0 1 1 1 0 Flavodoxin domain zinc-ribbons_6 PF07191.7 gi|410672251|ref|YP_006924622.1| - 0.099 12.4 2.9 0.12 12.2 2.0 1.1 1 0 0 1 1 1 0 zinc-ribbons Cys_rich_CPCC PF14206.1 gi|410672251|ref|YP_006924622.1| - 0.16 11.5 2.4 0.17 11.4 1.7 1.1 1 0 0 1 1 1 0 Cysteine-rich CPCC zf-HC2 PF13490.1 gi|410672251|ref|YP_006924622.1| - 0.21 11.5 1.1 0.21 11.5 0.8 1.6 2 0 0 2 2 2 0 Putative zinc-finger Cys_rich_CWC PF14375.1 gi|410672251|ref|YP_006924622.1| - 0.35 10.8 4.4 0.4 10.6 3.1 1.2 1 0 0 1 1 1 0 Cysteine-rich CWC zf-HIT PF04438.11 gi|410672251|ref|YP_006924622.1| - 2.4 7.8 6.0 6 6.6 0.1 2.2 2 0 0 2 2 2 0 HIT zinc finger Ogr_Delta PF04606.7 gi|410672251|ref|YP_006924622.1| - 2.5 7.8 5.9 4.2 7.1 3.1 1.8 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger DUF2387 PF09526.5 gi|410672251|ref|YP_006924622.1| - 4.2 7.3 7.1 16 5.5 4.9 2.0 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) UPF0547 PF10571.4 gi|410672251|ref|YP_006924622.1| - 7 6.4 11.1 32 4.3 7.7 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 GFA PF04828.9 gi|410672252|ref|YP_006924623.1| - 0.0081 16.0 2.9 0.19 11.7 0.1 2.1 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme DZR PF12773.2 gi|410672252|ref|YP_006924623.1| - 0.011 15.4 2.4 0.02 14.7 1.7 1.4 1 0 0 1 1 1 0 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|410672252|ref|YP_006924623.1| - 0.026 14.2 3.4 0.38 10.4 0.2 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn_ribbon_recom PF13408.1 gi|410672252|ref|YP_006924623.1| - 0.055 13.7 3.3 0.078 13.2 2.3 1.2 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zinc-ribbons_6 PF07191.7 gi|410672252|ref|YP_006924623.1| - 0.11 12.2 1.8 0.18 11.6 1.2 1.4 1 0 0 1 1 1 0 zinc-ribbons zf-ribbon_3 PF13248.1 gi|410672252|ref|YP_006924623.1| - 0.3 10.3 3.2 9.4 5.5 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C3HC4_4 PF15227.1 gi|410672252|ref|YP_006924623.1| - 0.65 9.9 4.3 0.99 9.3 1.2 2.1 1 1 1 2 2 2 0 zinc finger of C3HC4-type, RING C1_1 PF00130.17 gi|410672252|ref|YP_006924623.1| - 0.91 9.3 5.1 2 8.2 3.5 1.6 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_2 PF13240.1 gi|410672252|ref|YP_006924623.1| - 1 8.9 6.0 14 5.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|410672252|ref|YP_006924623.1| - 1.8 8.3 6.5 4.1 7.1 1.5 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|410672252|ref|YP_006924623.1| - 2.2 7.8 6.6 11 5.6 0.2 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain RRM_3 PF08777.6 gi|410672254|ref|YP_006924625.1| - 0.028 14.2 0.0 0.028 14.2 0.0 1.1 1 0 0 1 1 1 0 RNA binding motif zf-C4_Topoisom PF01396.14 gi|410672254|ref|YP_006924625.1| - 0.11 12.0 0.1 0.13 11.7 0.1 1.1 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger DDE_Tnp_IS1 PF03400.8 gi|410672255|ref|YP_006924626.1| - 2.9e-08 33.8 0.1 3.2e-08 33.7 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase DUF1724 PF08350.5 gi|410672256|ref|YP_006924627.1| - 2.2e-11 43.0 0.5 5.1e-11 41.9 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) Cas_Cas1 PF01867.11 gi|410672257|ref|YP_006924628.1| - 8.9e-27 93.8 0.2 1.4e-26 93.2 0.0 1.4 2 0 0 2 2 2 1 CRISPR associated protein Cas1 ER PF01133.12 gi|410672257|ref|YP_006924628.1| - 0.045 13.4 0.0 0.15 11.8 0.0 1.9 2 1 0 2 2 2 0 Enhancer of rudimentary Abi PF02517.11 gi|410672258|ref|YP_006924629.1| - 6.1e-10 39.1 7.1 6.1e-10 39.1 4.9 2.8 3 1 0 3 3 3 1 CAAX protease self-immunity DUF2593 PF10767.4 gi|410672258|ref|YP_006924629.1| - 0.11 12.1 2.9 0.53 9.9 0.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF2593) Epiglycanin_C PF14654.1 gi|410672258|ref|YP_006924629.1| - 0.71 9.8 3.0 0.88 9.6 0.1 2.1 2 0 0 2 2 2 0 Mucin, catalytic, TM and cytoplasmic tail region Kelch_4 PF13418.1 gi|410672259|ref|YP_006924630.1| - 0.0013 18.4 0.8 21 4.9 0.0 5.2 4 1 2 6 6 6 1 Galactose oxidase, central domain NUMOD1 PF07453.8 gi|410672259|ref|YP_006924630.1| - 2.2 8.2 7.3 39 4.2 0.0 4.5 5 0 0 5 5 5 0 NUMOD1 domain Kelch_4 PF13418.1 gi|410672260|ref|YP_006924631.1| - 0.018 14.7 0.9 35 4.2 0.0 4.6 4 0 0 4 4 4 0 Galactose oxidase, central domain PQQ PF01011.16 gi|410672260|ref|YP_006924631.1| - 0.019 14.4 0.9 0.48 10.0 0.2 3.5 4 0 0 4 4 4 0 PQQ enzyme repeat TRAM PF01938.15 gi|410672262|ref|YP_006924633.1| - 8.4e-17 60.7 1.3 8.9e-17 60.6 0.9 1.0 1 0 0 1 1 1 1 TRAM domain RsgI_N PF12791.2 gi|410672262|ref|YP_006924633.1| - 0.027 14.1 0.1 0.59 9.8 0.0 2.0 2 0 0 2 2 2 0 Anti-sigma factor N-terminus PEMT PF04191.8 gi|410672263|ref|YP_006924634.1| - 1.2e-15 57.4 1.9 1.2e-15 57.4 1.3 2.3 3 1 0 3 3 3 1 Phospholipid methyltransferase PAS_4 PF08448.5 gi|410672264|ref|YP_006924635.1| - 6.8e-35 119.4 0.0 6.2e-13 48.7 0.1 4.5 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|410672264|ref|YP_006924635.1| - 1.3e-31 108.5 0.2 2.8e-31 107.5 0.2 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|410672264|ref|YP_006924635.1| - 3.5e-28 98.0 0.3 7.8e-12 45.4 0.0 4.9 4 1 0 4 4 4 4 PAS domain Response_reg PF00072.19 gi|410672264|ref|YP_006924635.1| - 3.9e-25 88.0 1.2 1.2e-24 86.5 0.8 1.9 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|410672264|ref|YP_006924635.1| - 1.6e-18 66.4 0.1 1.6e-18 66.4 0.0 3.2 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|410672264|ref|YP_006924635.1| - 5e-11 42.0 0.0 0.0077 16.0 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS_10 PF13596.1 gi|410672264|ref|YP_006924635.1| - 8.6e-11 42.0 0.0 2.2e-05 24.6 0.0 4.1 3 1 0 3 3 3 2 PAS domain PAS PF00989.19 gi|410672264|ref|YP_006924635.1| - 2.4e-10 40.1 0.0 3.9e-05 23.4 0.0 4.1 3 1 0 3 3 3 2 PAS fold PAS_3 PF08447.6 gi|410672264|ref|YP_006924635.1| - 2.7e-07 30.6 2.4 0.00045 20.2 0.0 3.7 3 1 0 3 3 3 2 PAS fold GAF_2 PF13185.1 gi|410672264|ref|YP_006924635.1| - 0.004 17.6 0.0 0.23 11.9 0.0 2.4 2 0 0 2 2 2 1 GAF domain HATPase_c_3 PF13589.1 gi|410672264|ref|YP_006924635.1| - 0.018 14.6 0.3 0.039 13.5 0.2 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|410672264|ref|YP_006924635.1| - 0.041 13.8 3.4 2.4 8.1 0.0 4.9 4 2 0 4 4 4 0 PAS fold Cache_1 PF02743.13 gi|410672265|ref|YP_006924636.1| - 2e-07 30.4 0.1 6.7e-07 28.7 0.1 2.0 1 1 0 1 1 1 1 Cache domain Cache_2 PF08269.6 gi|410672265|ref|YP_006924636.1| - 3.5e-06 26.8 0.0 1.1e-05 25.2 0.0 1.8 1 0 0 1 1 1 1 Cache domain Cache_3 PF14827.1 gi|410672265|ref|YP_006924636.1| - 7.3e-05 22.6 1.5 0.0022 17.9 0.1 2.7 3 0 0 3 3 3 1 Sensory domain of two-component sensor kinase TarH PF02203.10 gi|410672265|ref|YP_006924636.1| - 0.0014 18.4 1.5 0.0076 16.0 0.0 2.2 2 0 0 2 2 2 1 Tar ligand binding domain homologue HAMP PF00672.20 gi|410672265|ref|YP_006924636.1| - 0.0023 18.0 0.2 0.0023 18.0 0.2 1.6 2 0 0 2 2 2 1 HAMP domain DUF1430 PF07242.6 gi|410672265|ref|YP_006924636.1| - 0.0044 17.0 2.6 0.0052 16.8 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1430) Fanconi_A PF03511.9 gi|410672265|ref|YP_006924636.1| - 0.12 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Fanconi anaemia group A protein HTH_29 PF13551.1 gi|410672266|ref|YP_006924637.1| - 7.6e-17 61.4 0.0 1.1e-16 60.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410672266|ref|YP_006924637.1| - 1e-10 42.2 0.3 2.2e-10 41.2 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|410672266|ref|YP_006924637.1| - 4.9e-09 35.5 0.8 8.8e-09 34.7 0.2 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|410672266|ref|YP_006924637.1| - 8.6e-07 28.4 0.1 3.1e-06 26.6 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|410672266|ref|YP_006924637.1| - 8.3e-06 25.7 0.0 2e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_21 PF13276.1 gi|410672266|ref|YP_006924637.1| - 0.031 14.2 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 HTH-like domain DDE_3 PF13358.1 gi|410672267|ref|YP_006924638.1| - 2.8e-23 82.2 0.1 3.9e-23 81.8 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|410672267|ref|YP_006924638.1| - 1.3e-09 38.1 0.0 2.1e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|410672267|ref|YP_006924638.1| - 8.7e-09 34.8 0.2 1e-08 34.5 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|410672267|ref|YP_006924638.1| - 0.009 14.7 0.0 0.01 14.6 0.0 1.2 1 0 0 1 1 1 1 Rhodopirellula transposase DDE domain DUF3800 PF12686.2 gi|410672267|ref|YP_006924638.1| - 0.047 13.3 0.0 0.057 13.0 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) Ribosomal_S2 PF00318.15 gi|410672267|ref|YP_006924638.1| - 0.051 12.8 3.3 0.58 9.3 2.3 2.0 1 1 0 1 1 1 0 Ribosomal protein S2 PAS_9 PF13426.1 gi|410672268|ref|YP_006924639.1| - 0.0092 16.3 0.0 0.01 16.1 0.0 1.2 1 0 0 1 1 1 1 PAS domain HATPase_c PF02518.21 gi|410672269|ref|YP_006924640.1| - 4.1e-32 110.1 0.1 6.9e-32 109.4 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|410672269|ref|YP_006924640.1| - 4.6e-22 77.8 0.0 8.1e-22 77.0 0.0 1.4 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|410672269|ref|YP_006924640.1| - 2.4e-10 40.4 0.0 5.2e-10 39.3 0.0 1.6 1 1 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|410672269|ref|YP_006924640.1| - 8e-05 22.3 0.3 0.00017 21.2 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|410672269|ref|YP_006924640.1| - 0.00055 19.5 0.1 0.0012 18.5 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS_10 PF13596.1 gi|410672269|ref|YP_006924640.1| - 0.0024 18.0 0.0 0.0061 16.8 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.1 gi|410672269|ref|YP_006924640.1| - 0.0028 17.9 0.0 0.0057 17.0 0.0 1.6 1 0 0 1 1 1 1 PAS domain DUF772 PF05598.6 gi|410672270|ref|YP_006924641.1| - 1.5e-21 76.0 0.1 5.3e-21 74.3 0.0 1.8 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|410672270|ref|YP_006924641.1| - 2.9e-12 46.6 0.8 1.4e-10 41.0 0.6 2.2 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|410672270|ref|YP_006924641.1| - 0.00028 20.5 0.1 0.0005 19.7 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|410672270|ref|YP_006924641.1| - 0.00041 20.1 0.1 0.00075 19.2 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|410672270|ref|YP_006924641.1| - 0.021 14.8 0.1 0.043 13.8 0.1 1.5 1 0 0 1 1 1 0 Transposase DDE domain Ribonuc_L-PSP PF01042.16 gi|410672271|ref|YP_006924642.1| - 2.3e-11 43.5 0.0 2.8e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Endoribonuclease L-PSP TetR_N PF00440.18 gi|410672272|ref|YP_006924643.1| - 1e-08 34.6 0.0 2.3e-08 33.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Terminase_5 PF06056.7 gi|410672272|ref|YP_006924643.1| - 0.00086 18.8 0.0 0.0023 17.4 0.0 1.8 1 1 1 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) Sigma70_r4_2 PF08281.7 gi|410672272|ref|YP_006924643.1| - 0.0025 17.2 0.1 0.0073 15.7 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HDC PF02329.11 gi|410672272|ref|YP_006924643.1| - 0.084 11.5 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 Histidine carboxylase PI chain GerE PF00196.14 gi|410672272|ref|YP_006924643.1| - 0.12 11.7 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_23 PF13384.1 gi|410672273|ref|YP_006924644.1| - 0.05 13.2 0.0 0.081 12.6 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.1 gi|410672273|ref|YP_006924644.1| - 0.089 12.8 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain KaiC PF06745.8 gi|410672273|ref|YP_006924644.1| - 0.12 11.4 0.1 0.54 9.3 0.1 1.8 1 1 1 2 2 2 0 KaiC HTH_Tnp_1 PF01527.15 gi|410672273|ref|YP_006924644.1| - 0.13 12.1 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Transposase DUF1638 PF07796.6 gi|410672274|ref|YP_006924645.1| - 1.5e-42 145.0 0.0 2.1e-42 144.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) SpoU_sub_bind PF08032.7 gi|410672274|ref|YP_006924645.1| - 0.027 14.6 0.1 0.098 12.8 0.0 1.9 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding SEFIR PF08357.6 gi|410672274|ref|YP_006924645.1| - 0.058 13.4 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 SEFIR domain Imm22 PF15592.1 gi|410672275|ref|YP_006924646.1| - 0.054 13.8 0.7 0.15 12.3 0.2 1.8 2 0 0 2 2 2 0 Immunity protein 22 DUF1888 PF08985.6 gi|410672275|ref|YP_006924646.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1888) HTH_Crp_2 PF13545.1 gi|410672276|ref|YP_006924647.1| - 0.018 14.8 0.1 0.039 13.7 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Endonuclease_5 PF04493.9 gi|410672276|ref|YP_006924647.1| - 0.11 11.7 0.1 0.19 11.0 0.1 1.5 1 0 0 1 1 1 0 Endonuclease V SPC12 PF06645.8 gi|410672278|ref|YP_006924649.1| - 0.00091 18.9 1.0 0.0015 18.3 0.7 1.3 1 0 0 1 1 1 1 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF2292 PF10055.4 gi|410672278|ref|YP_006924649.1| - 0.061 12.6 0.1 0.14 11.4 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized small protein (DUF2292) DUF3328 PF11807.3 gi|410672278|ref|YP_006924649.1| - 0.084 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3328) ABC_membrane PF00664.18 gi|410672278|ref|YP_006924649.1| - 0.75 9.1 5.0 5.3 6.3 3.8 1.9 1 1 1 2 2 2 0 ABC transporter transmembrane region Golgin_A5 PF09787.4 gi|410672279|ref|YP_006924650.1| - 4.2 5.7 10.0 5.1 5.4 7.0 1.0 1 0 0 1 1 1 0 Golgin subfamily A member 5 Tape_meas_lam_C PF09718.5 gi|410672279|ref|YP_006924650.1| - 6 6.8 13.3 5.9 6.8 5.9 2.5 2 1 1 3 3 3 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) DUF515 PF04415.7 gi|410672279|ref|YP_006924650.1| - 6.4 4.9 13.1 7.4 4.6 9.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF515) HTH_29 PF13551.1 gi|410672280|ref|YP_006924651.1| - 1.8e-16 60.2 0.0 2.8e-16 59.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410672280|ref|YP_006924651.1| - 1e-10 42.2 0.3 2.2e-10 41.2 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|410672280|ref|YP_006924651.1| - 6e-09 35.3 0.4 1.2e-08 34.3 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|410672280|ref|YP_006924651.1| - 1.2e-06 27.9 0.1 4.4e-06 26.1 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|410672280|ref|YP_006924651.1| - 7.6e-06 25.8 0.0 1.8e-05 24.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_21 PF13276.1 gi|410672280|ref|YP_006924651.1| - 0.031 14.2 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 HTH-like domain DDE_3 PF13358.1 gi|410672281|ref|YP_006924652.1| - 2.8e-23 82.2 0.1 3.9e-23 81.8 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|410672281|ref|YP_006924652.1| - 1.2e-09 38.2 0.0 2.1e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|410672281|ref|YP_006924652.1| - 9.1e-09 34.7 0.2 1.1e-08 34.5 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|410672281|ref|YP_006924652.1| - 0.009 14.7 0.0 0.01 14.6 0.0 1.2 1 0 0 1 1 1 1 Rhodopirellula transposase DDE domain DUF3800 PF12686.2 gi|410672281|ref|YP_006924652.1| - 0.047 13.3 0.0 0.057 13.0 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) Ribosomal_S2 PF00318.15 gi|410672281|ref|YP_006924652.1| - 0.05 12.8 3.3 0.58 9.3 2.3 2.0 1 1 0 1 1 1 0 Ribosomal protein S2 DUF3458 PF11940.3 gi|410672282|ref|YP_006924653.1| - 1.1e-61 208.7 1.3 1.1e-61 208.7 0.9 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF3458) Peptidase_M1 PF01433.15 gi|410672282|ref|YP_006924653.1| - 1e-29 103.8 0.0 2.5e-17 63.0 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M1 Peptidase_MA_2 PF13485.1 gi|410672282|ref|YP_006924653.1| - 2.5e-14 53.4 0.0 5.8e-14 52.2 0.0 1.7 1 0 0 1 1 1 1 Peptidase MA superfamily NosD PF05048.8 gi|410672283|ref|YP_006924654.1| - 9.9e-33 113.2 28.3 9.9e-33 113.2 19.6 2.0 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) Peptidase_C1 PF00112.18 gi|410672283|ref|YP_006924654.1| - 5.2e-25 88.6 0.1 9.6e-25 87.7 0.1 1.4 1 0 0 1 1 1 1 Papain family cysteine protease PKD PF00801.15 gi|410672283|ref|YP_006924654.1| - 5.2e-13 48.5 1.6 1.2e-12 47.3 0.5 2.2 2 0 0 2 2 2 1 PKD domain Beta_helix PF13229.1 gi|410672283|ref|YP_006924654.1| - 7e-08 32.3 31.2 7e-08 32.3 21.6 4.1 4 1 1 5 5 5 1 Right handed beta helix region DUF1565 PF07602.6 gi|410672283|ref|YP_006924654.1| - 0.0039 16.3 5.5 0.2 10.7 3.8 2.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) TIM PF00121.13 gi|410672283|ref|YP_006924654.1| - 0.08 11.9 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Triosephosphate isomerase Peptidase_C1_2 PF03051.10 gi|410672283|ref|YP_006924654.1| - 0.09 11.2 0.5 0.22 9.9 0.1 1.7 2 0 0 2 2 2 0 Peptidase C1-like family Acetyltransf_1 PF00583.19 gi|410672284|ref|YP_006924655.1| - 1.7e-14 53.5 0.0 2.7e-14 52.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|410672284|ref|YP_006924655.1| - 3.4e-09 36.7 0.0 6.4e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|410672284|ref|YP_006924655.1| - 5.3e-07 29.3 0.0 8.9e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|410672284|ref|YP_006924655.1| - 6.8e-07 29.4 0.0 8.7e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|410672284|ref|YP_006924655.1| - 7.1e-07 29.2 0.4 8.7e-07 29.0 0.3 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|410672284|ref|YP_006924655.1| - 3.6e-06 26.8 0.0 4.7e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|410672284|ref|YP_006924655.1| - 1.2e-05 25.2 0.0 1.4e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|410672284|ref|YP_006924655.1| - 0.014 15.5 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|410672284|ref|YP_006924655.1| - 0.031 13.8 0.0 0.043 13.4 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|410672284|ref|YP_006924655.1| - 0.061 13.2 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase S-layer PF07752.6 gi|410672285|ref|YP_006924656.1| - 1.1e-148 493.4 29.1 2.2e-56 190.9 0.3 6.2 3 1 3 6 6 6 6 S-layer protein DUF2124 PF09897.4 gi|410672286|ref|YP_006924657.1| - 2.3e-49 166.8 0.0 2.7e-49 166.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) Met_10 PF02475.11 gi|410672287|ref|YP_006924658.1| - 6.3e-62 208.7 0.1 8.3e-62 208.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|410672287|ref|YP_006924658.1| - 4e-07 30.5 0.0 7.3e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|410672287|ref|YP_006924658.1| - 5.7e-05 22.5 0.0 8.9e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TRM PF02005.11 gi|410672287|ref|YP_006924658.1| - 9.9e-05 21.4 0.0 0.00014 20.9 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|410672287|ref|YP_006924658.1| - 0.00016 21.6 0.0 0.00026 21.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|410672287|ref|YP_006924658.1| - 0.00071 19.1 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_21 PF05050.7 gi|410672287|ref|YP_006924658.1| - 0.0037 17.2 0.0 0.0073 16.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase FkbM domain GidB PF02527.10 gi|410672287|ref|YP_006924658.1| - 0.0046 16.1 0.0 0.0068 15.5 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_31 PF13847.1 gi|410672287|ref|YP_006924658.1| - 0.0047 16.5 0.0 0.0083 15.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|410672287|ref|YP_006924658.1| - 0.015 14.7 0.0 0.023 14.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 tRNA_U5-meth_tr PF05958.6 gi|410672287|ref|YP_006924658.1| - 0.022 13.4 0.0 0.031 12.9 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase PrmA PF06325.8 gi|410672287|ref|YP_006924658.1| - 0.035 13.2 0.0 0.05 12.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) HTH_5 PF01022.15 gi|410672288|ref|YP_006924659.1| - 9.8e-10 37.9 0.0 1.6e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|410672288|ref|YP_006924659.1| - 0.00064 19.3 0.0 0.001 18.7 0.0 1.2 1 0 0 1 1 1 1 MarR family V4R PF02830.13 gi|410672288|ref|YP_006924659.1| - 0.0025 17.5 0.7 0.0048 16.6 0.5 1.5 1 0 0 1 1 1 1 V4R domain HTH_IclR PF09339.5 gi|410672288|ref|YP_006924659.1| - 0.0057 16.2 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|410672288|ref|YP_006924659.1| - 0.022 14.5 0.0 0.044 13.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|410672288|ref|YP_006924659.1| - 0.097 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.1 gi|410672288|ref|YP_006924659.1| - 0.12 11.9 0.0 0.54 9.8 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|410672288|ref|YP_006924659.1| - 0.13 11.6 0.0 0.38 10.1 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF2110 PF09883.4 gi|410672289|ref|YP_006924660.1| - 5.1e-70 235.5 1.3 5.8e-70 235.4 0.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) S1 PF00575.18 gi|410672289|ref|YP_006924660.1| - 0.0025 17.8 0.1 0.0069 16.4 0.1 1.8 1 0 0 1 1 1 1 S1 RNA binding domain DUF3567 PF12091.3 gi|410672290|ref|YP_006924661.1| - 7.1e-05 22.7 0.5 0.00092 19.1 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3567) HTH_45 PF14947.1 gi|410672290|ref|YP_006924661.1| - 0.0019 17.9 0.1 0.0035 17.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix CENP-F_leu_zip PF10473.4 gi|410672290|ref|YP_006924661.1| - 0.0041 16.9 0.3 0.019 14.8 0.0 2.0 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HTH_27 PF13463.1 gi|410672290|ref|YP_006924661.1| - 0.0046 17.2 0.0 0.0096 16.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|410672290|ref|YP_006924661.1| - 0.017 14.7 0.7 0.028 14.0 0.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) MarR PF01047.17 gi|410672290|ref|YP_006924661.1| - 0.077 12.7 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF2312 PF10073.4 gi|410672290|ref|YP_006924661.1| - 0.27 10.6 2.3 1.5 8.2 0.0 2.8 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2312) TRM PF02005.11 gi|410672291|ref|YP_006924662.1| - 8.2e-103 344.2 0.0 9.4e-103 344.0 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.10 gi|410672291|ref|YP_006924662.1| - 0.014 14.7 0.0 0.022 14.1 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Copper-bind PF00127.15 gi|410672292|ref|YP_006924663.1| - 0.00087 19.4 0.4 0.0094 16.1 0.1 2.4 1 1 1 2 2 2 1 Copper binding proteins, plastocyanin/azurin family PKD PF00801.15 gi|410672292|ref|YP_006924663.1| - 1.8 8.4 5.7 10 5.9 0.5 2.3 2 0 0 2 2 2 0 PKD domain Metallophos_2 PF12850.2 gi|410672293|ref|YP_006924664.1| - 2.2e-20 73.0 0.0 3.1e-20 72.5 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|410672293|ref|YP_006924664.1| - 2.1e-14 53.4 0.0 3.5e-14 52.6 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|410672293|ref|YP_006924664.1| - 7.9e-08 31.7 0.4 0.00023 20.4 0.0 2.8 2 1 1 3 3 3 2 Metallophosphoesterase, calcineurin superfamily DrsE PF02635.10 gi|410672293|ref|YP_006924664.1| - 0.012 15.6 0.0 0.021 14.8 0.0 1.5 1 1 0 1 1 1 0 DsrE/DsrF-like family AIM24 PF01987.12 gi|410672294|ref|YP_006924665.1| - 5.5e-70 235.1 0.8 6.4e-70 234.9 0.6 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Aminotran_1_2 PF00155.16 gi|410672295|ref|YP_006924666.1| - 4.6e-33 114.6 0.0 6.2e-33 114.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II zf-like PF04071.7 gi|410672295|ref|YP_006924666.1| - 4.5e-29 99.9 2.5 9e-29 99.0 1.7 1.4 1 0 0 1 1 1 1 Cysteine-rich small domain Cys_Met_Meta_PP PF01053.15 gi|410672295|ref|YP_006924666.1| - 0.064 11.5 0.0 0.1 10.8 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|410672296|ref|YP_006924667.1| - 2.2e-49 168.3 0.0 2.8e-49 167.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II zf-like PF04071.7 gi|410672296|ref|YP_006924667.1| - 6.5e-29 99.4 7.4 1.6e-28 98.1 5.1 1.6 1 0 0 1 1 1 1 Cysteine-rich small domain Cys_Met_Meta_PP PF01053.15 gi|410672296|ref|YP_006924667.1| - 0.0059 14.9 0.0 0.0094 14.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DUF2521 PF10730.4 gi|410672296|ref|YP_006924667.1| - 0.017 14.9 0.1 0.032 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2521) Beta_elim_lyase PF01212.16 gi|410672296|ref|YP_006924667.1| - 0.032 13.3 0.0 0.13 11.3 0.0 1.9 1 1 0 1 1 1 0 Beta-eliminating lyase CobD_Cbib PF03186.8 gi|410672297|ref|YP_006924668.1| - 1.2e-91 306.9 1.1 1.4e-91 306.6 0.8 1.1 1 0 0 1 1 1 1 CobD/Cbib protein PGG PF13962.1 gi|410672297|ref|YP_006924668.1| - 8.8 5.9 10.7 0.11 12.1 0.5 2.8 3 1 1 4 4 4 0 Domain of unknown function PgpA PF04608.8 gi|410672298|ref|YP_006924669.1| - 3.6e-08 33.3 0.1 5.3e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A YtxH PF12732.2 gi|410672298|ref|YP_006924669.1| - 0.074 13.4 0.2 7.6 6.9 0.0 2.3 2 0 0 2 2 2 0 YtxH-like protein CobS PF02654.10 gi|410672299|ref|YP_006924670.1| - 2.6e-47 161.4 18.5 8.1e-47 159.7 12.8 1.6 1 1 0 1 1 1 1 Cobalamin-5-phosphate synthase Cellulose_synt PF03552.9 gi|410672299|ref|YP_006924670.1| - 0.043 12.1 0.1 0.068 11.4 0.1 1.2 1 0 0 1 1 1 0 Cellulose synthase NTP_transf_3 PF12804.2 gi|410672300|ref|YP_006924671.1| - 3.4e-14 53.2 0.0 4.6e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|410672300|ref|YP_006924671.1| - 6e-09 35.7 0.0 9.4e-09 35.1 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|410672300|ref|YP_006924671.1| - 0.0047 16.5 0.0 0.0085 15.7 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.18 gi|410672300|ref|YP_006924671.1| - 0.13 11.4 0.1 0.19 10.9 0.0 1.4 1 1 0 1 1 1 0 Nucleotidyl transferase DUF2064 PF09837.4 gi|410672300|ref|YP_006924671.1| - 0.14 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) Acetyltransf_1 PF00583.19 gi|410672302|ref|YP_006924673.1| - 5.5e-16 58.3 0.0 8.8e-16 57.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|410672302|ref|YP_006924673.1| - 1.1e-11 44.7 0.1 2e-11 43.8 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|410672302|ref|YP_006924673.1| - 2.6e-09 36.9 0.0 3.5e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|410672302|ref|YP_006924673.1| - 1e-07 31.6 0.0 1.8e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|410672302|ref|YP_006924673.1| - 1.2e-07 31.7 0.0 1.8e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|410672302|ref|YP_006924673.1| - 1.8e-07 31.3 0.0 2.4e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|410672302|ref|YP_006924673.1| - 1.3e-06 28.4 0.0 1.8e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|410672302|ref|YP_006924673.1| - 0.0048 17.0 0.0 0.0057 16.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|410672302|ref|YP_006924673.1| - 0.032 14.1 0.0 0.052 13.4 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF1801 PF08818.6 gi|410672303|ref|YP_006924674.1| - 3.9e-15 55.8 0.0 4.3e-15 55.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DU1801) DUF4096 PF13340.1 gi|410672304|ref|YP_006924675.1| - 7.9e-07 28.8 0.1 1.2e-06 28.2 0.1 1.3 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DUF1005 PF06219.7 gi|410672304|ref|YP_006924675.1| - 0.012 14.3 0.1 0.013 14.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1005) Na_H_Exchanger PF00999.16 gi|410672305|ref|YP_006924676.1| - 2.9e-55 187.3 51.4 3.7e-55 186.9 35.6 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Usp PF00582.21 gi|410672305|ref|YP_006924676.1| - 6.1e-12 45.9 0.1 1.8e-11 44.3 0.0 1.7 2 0 0 2 2 2 1 Universal stress protein family TRAP_alpha PF03896.11 gi|410672306|ref|YP_006924677.1| - 0.0044 16.0 2.7 0.0047 15.9 1.9 1.0 1 0 0 1 1 1 1 Translocon-associated protein (TRAP), alpha subunit InvH PF04741.7 gi|410672306|ref|YP_006924677.1| - 0.0095 15.8 0.0 0.0098 15.7 0.0 1.1 1 0 0 1 1 1 1 InvH outer membrane lipoprotein Brevenin PF03032.10 gi|410672306|ref|YP_006924677.1| - 0.037 13.8 0.7 0.077 12.8 0.5 1.7 1 1 0 1 1 1 0 Brevenin/esculentin/gaegurin/rugosin family LPAM_1 PF08139.7 gi|410672306|ref|YP_006924677.1| - 2.7 8.3 4.0 5.2 7.4 2.8 1.4 1 1 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site PvlArgDC PF01862.11 gi|410672307|ref|YP_006924678.1| - 2.8e-65 218.9 0.1 3.1e-65 218.7 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) VWA_2 PF13519.1 gi|410672308|ref|YP_006924679.1| - 4.4e-08 33.4 0.0 8.5e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|410672308|ref|YP_006924679.1| - 2.4e-06 27.3 0.0 4.8e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain CobT_C PF11775.3 gi|410672308|ref|YP_006924679.1| - 0.028 13.8 0.0 0.13 11.6 0.0 2.0 2 0 0 2 2 2 0 Cobalamin biosynthesis protein CobT VWA domain CbbQ_C PF08406.5 gi|410672309|ref|YP_006924680.1| - 1.1e-32 111.8 0.1 3.8e-32 110.1 0.0 1.9 2 0 0 2 2 2 1 CbbQ/NirQ/NorQ C-terminal AAA_5 PF07728.9 gi|410672309|ref|YP_006924680.1| - 1.1e-30 106.1 0.0 1.6e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|410672309|ref|YP_006924680.1| - 0.00097 19.2 0.0 0.0017 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|410672309|ref|YP_006924680.1| - 0.0028 17.8 0.0 0.0043 17.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|410672309|ref|YP_006924680.1| - 0.0049 16.7 0.0 0.0086 15.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_3 PF07726.6 gi|410672309|ref|YP_006924680.1| - 0.015 14.9 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|410672309|ref|YP_006924680.1| - 0.033 14.3 0.0 0.056 13.6 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Sigma54_activat PF00158.21 gi|410672309|ref|YP_006924680.1| - 0.07 12.5 0.0 0.15 11.5 0.0 1.5 1 1 0 1 1 1 0 Sigma-54 interaction domain NACHT PF05729.7 gi|410672309|ref|YP_006924680.1| - 0.075 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ResIII PF04851.10 gi|410672309|ref|YP_006924680.1| - 0.16 11.7 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit HP_OMP PF01856.12 gi|410672309|ref|YP_006924680.1| - 0.18 11.6 0.0 0.26 11.0 0.0 1.2 1 0 0 1 1 1 0 Helicobacter outer membrane protein PD40 PF07676.7 gi|410672310|ref|YP_006924681.1| - 1.6e-07 30.8 2.7 6.8 6.4 0.0 7.3 8 1 0 8 8 8 3 WD40-like Beta Propeller Repeat DUF295 PF03478.13 gi|410672310|ref|YP_006924681.1| - 2.9e-06 26.5 1.7 12 5.3 0.0 6.1 6 0 0 6 6 6 1 Protein of unknown function (DUF295) FAINT PF04385.10 gi|410672310|ref|YP_006924681.1| - 0.0002 21.1 3.3 3.2 7.6 0.0 4.6 4 0 0 4 4 4 2 Domain of unknown function, DUF529 Kelch_4 PF13418.1 gi|410672310|ref|YP_006924681.1| - 0.00052 19.7 0.1 41 4.0 0.0 5.1 5 0 0 5 5 5 0 Galactose oxidase, central domain DPPIV_N PF00930.16 gi|410672310|ref|YP_006924681.1| - 0.0029 16.2 9.9 0.61 8.6 0.5 4.5 2 1 1 4 4 4 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region MotCF PF09158.5 gi|410672310|ref|YP_006924681.1| - 0.068 12.8 1.6 17 5.1 0.1 4.0 2 2 1 5 5 5 0 Bacteriophage T4 MotA, C-terminal TRSP PF12500.3 gi|410672310|ref|YP_006924681.1| - 0.15 11.5 2.9 18 4.7 0.0 3.7 2 1 2 4 4 4 0 TRSP domain C terminus to PRTase_2 Cupin_2 PF07883.6 gi|410672311|ref|YP_006924682.1| - 2.4e-07 30.1 0.0 3.1e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|410672311|ref|YP_006924682.1| - 4e-05 23.3 0.0 5.3e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_6 PF12852.2 gi|410672311|ref|YP_006924682.1| - 0.14 11.7 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 Cupin Auxin_BP PF02041.11 gi|410672311|ref|YP_006924682.1| - 0.15 11.5 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Auxin binding protein Apolipoprotein PF01442.13 gi|410672312|ref|YP_006924683.1| - 0.17 11.4 0.1 14 5.1 0.0 2.3 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain AAA_4 PF04326.9 gi|410672314|ref|YP_006924685.1| - 2.8e-20 72.6 0.2 5.3e-20 71.7 0.1 1.5 1 0 0 1 1 1 1 Divergent AAA domain DAGK_acc PF00609.14 gi|410672314|ref|YP_006924685.1| - 0.0078 16.3 0.0 0.017 15.3 0.0 1.6 1 0 0 1 1 1 1 Diacylglycerol kinase accessory domain GSDH PF07995.6 gi|410672315|ref|YP_006924686.1| - 8.5e-95 317.6 0.1 1.1e-94 317.2 0.1 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase NHL PF01436.16 gi|410672315|ref|YP_006924686.1| - 5e-05 23.0 0.0 0.23 11.4 0.0 4.4 5 0 0 5 5 5 1 NHL repeat Reg_prop PF07494.6 gi|410672315|ref|YP_006924686.1| - 0.0087 15.9 0.6 16 5.9 0.0 3.8 3 0 0 3 3 3 1 Two component regulator propeller Tachylectin PF14517.1 gi|410672315|ref|YP_006924686.1| - 0.1 11.8 0.0 2.9 7.1 0.0 2.3 2 0 0 2 2 2 0 Tachylectin DEAD PF00270.24 gi|410672316|ref|YP_006924687.1| - 1.2e-25 89.9 0.0 2.5e-25 88.9 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase TPR_1 PF00515.23 gi|410672316|ref|YP_006924687.1| - 1e-16 59.6 7.5 1.8e-08 33.6 0.1 3.7 3 0 0 3 3 3 3 Tetratricopeptide repeat DUF1998 PF09369.5 gi|410672316|ref|YP_006924687.1| - 1.2e-16 61.0 0.1 3.2e-16 59.6 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) TPR_11 PF13414.1 gi|410672316|ref|YP_006924687.1| - 1.6e-16 59.7 3.0 2.6e-08 33.3 0.3 2.5 2 0 0 2 2 2 2 TPR repeat TPR_2 PF07719.12 gi|410672316|ref|YP_006924687.1| - 3.4e-16 57.7 3.3 1.5e-07 30.7 0.1 3.9 3 0 0 3 3 3 3 Tetratricopeptide repeat Helicase_C PF00271.26 gi|410672316|ref|YP_006924687.1| - 2.4e-10 40.1 0.2 1e-09 38.1 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain TPR_16 PF13432.1 gi|410672316|ref|YP_006924687.1| - 1.1e-09 38.6 0.9 0.00086 19.9 0.1 2.8 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|410672316|ref|YP_006924687.1| - 1.4e-09 37.0 3.0 8.5e-05 22.0 0.2 3.9 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|410672316|ref|YP_006924687.1| - 5.6e-08 32.5 0.4 0.00052 19.8 0.1 2.6 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|410672316|ref|YP_006924687.1| - 1.4e-07 31.5 0.5 0.019 15.5 0.0 4.1 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|410672316|ref|YP_006924687.1| - 1.2e-06 28.7 0.3 0.0087 16.3 0.0 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|410672316|ref|YP_006924687.1| - 6.8e-06 25.9 3.2 0.00021 21.1 0.9 2.6 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|410672316|ref|YP_006924687.1| - 0.00019 21.3 2.0 0.16 12.2 0.0 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|410672316|ref|YP_006924687.1| - 0.00074 19.8 0.6 0.34 11.4 0.0 3.6 3 0 0 3 3 3 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|410672316|ref|YP_006924687.1| - 0.0072 16.4 0.5 0.022 14.8 0.4 1.9 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|410672316|ref|YP_006924687.1| - 0.013 15.2 5.3 0.63 9.9 0.1 4.5 2 2 1 3 3 3 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|410672316|ref|YP_006924687.1| - 0.072 12.9 2.6 1.5 8.8 0.2 3.0 3 0 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.1 gi|410672316|ref|YP_006924687.1| - 0.45 10.5 2.4 21 5.2 0.1 3.1 2 0 0 2 2 2 0 Tetratricopeptide repeat FKBP_C PF00254.23 gi|410672317|ref|YP_006924688.1| - 0.00017 21.5 0.4 0.00025 21.0 0.3 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Phage_integrase PF00589.17 gi|410672318|ref|YP_006924689.1| - 2.1e-05 24.2 0.8 4.8e-05 23.0 0.1 2.0 2 1 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|410672318|ref|YP_006924689.1| - 0.025 14.8 1.0 1.5 9.1 0.1 3.3 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain Glyco_trans_4_2 PF13477.1 gi|410672322|ref|YP_006924693.1| - 0.02 14.7 0.0 0.13 12.0 0.0 2.0 1 1 1 2 2 2 0 Glycosyl transferase 4-like Frankia_peptide PF14407.1 gi|410672322|ref|YP_006924693.1| - 0.024 14.3 0.1 0.046 13.4 0.1 1.5 1 0 0 1 1 1 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. EcoEI_R_C PF08463.5 gi|410672322|ref|YP_006924693.1| - 0.027 14.3 0.2 0.059 13.2 0.0 1.6 2 0 0 2 2 2 0 EcoEI R protein C-terminal Abi_2 PF07751.6 gi|410672322|ref|YP_006924693.1| - 0.068 13.3 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Abi-like protein D5_N PF08706.6 gi|410672323|ref|YP_006924694.1| - 1.6e-09 37.9 0.1 5.9e-09 36.1 0.0 1.9 2 0 0 2 2 1 1 D5 N terminal like AAA_5 PF07728.9 gi|410672323|ref|YP_006924694.1| - 4.3e-05 23.2 0.2 0.0033 17.1 0.0 3.1 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|410672323|ref|YP_006924694.1| - 0.00014 22.7 0.0 0.00048 20.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain Pox_D5 PF03288.11 gi|410672323|ref|YP_006924694.1| - 0.00019 21.6 0.2 0.00086 19.5 0.0 2.2 2 0 0 2 2 1 1 Poxvirus D5 protein-like AAA_33 PF13671.1 gi|410672323|ref|YP_006924694.1| - 0.00022 21.1 0.0 0.0004 20.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|410672323|ref|YP_006924694.1| - 0.00023 21.4 0.0 0.0019 18.4 0.0 2.2 2 0 0 2 2 2 1 ABC transporter AAA_18 PF13238.1 gi|410672323|ref|YP_006924694.1| - 0.00089 19.5 0.1 0.0034 17.6 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|410672323|ref|YP_006924694.1| - 0.0021 18.1 0.0 0.0047 17.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|410672323|ref|YP_006924694.1| - 0.0034 17.4 0.0 0.0073 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|410672323|ref|YP_006924694.1| - 0.0045 17.2 0.0 0.0087 16.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|410672323|ref|YP_006924694.1| - 0.0059 16.2 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_10 PF12846.2 gi|410672323|ref|YP_006924694.1| - 0.015 14.7 0.1 0.34 10.3 0.0 2.5 3 0 0 3 3 2 0 AAA-like domain RNA_helicase PF00910.17 gi|410672323|ref|YP_006924694.1| - 0.016 15.3 0.0 0.045 13.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.18 gi|410672323|ref|YP_006924694.1| - 0.019 14.9 0.0 0.037 13.9 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.1 gi|410672323|ref|YP_006924694.1| - 0.022 14.2 0.0 0.052 13.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|410672323|ref|YP_006924694.1| - 0.029 13.5 0.0 0.054 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|410672323|ref|YP_006924694.1| - 0.033 13.2 0.0 0.057 12.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Mg_chelatase PF01078.16 gi|410672323|ref|YP_006924694.1| - 0.055 12.6 0.1 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI VirE PF05272.6 gi|410672323|ref|YP_006924694.1| - 0.059 12.8 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 Virulence-associated protein E Rad17 PF03215.10 gi|410672323|ref|YP_006924694.1| - 0.07 11.8 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_28 PF13521.1 gi|410672323|ref|YP_006924694.1| - 0.08 12.8 0.0 0.16 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_21 PF13304.1 gi|410672323|ref|YP_006924694.1| - 0.084 12.8 0.0 0.27 11.1 0.0 1.9 2 0 0 2 2 1 0 AAA domain Viral_helicase1 PF01443.13 gi|410672323|ref|YP_006924694.1| - 0.13 11.7 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.10 gi|410672323|ref|YP_006924694.1| - 0.17 11.5 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 NTPase Caveolin PF01146.12 gi|410672324|ref|YP_006924695.1| - 0.14 11.7 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 Caveolin DUF3930 PF13067.1 gi|410672324|ref|YP_006924695.1| - 0.14 11.9 0.1 0.19 11.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3930) DUF494 PF04361.8 gi|410672325|ref|YP_006924696.1| - 0.082 12.5 0.0 0.093 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF494) Band_7_1 PF13421.1 gi|410672325|ref|YP_006924696.1| - 0.14 11.6 0.0 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 SPFH domain-Band 7 family Glug PF07581.7 gi|410672330|ref|YP_006924701.1| - 2.5 8.4 9.5 2.6 8.4 0.4 3.6 3 0 0 3 3 3 0 The GLUG motif DUF668 PF05003.7 gi|410672331|ref|YP_006924702.1| - 0.026 14.7 0.2 0.059 13.5 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF668) DUF2946 PF11162.3 gi|410672332|ref|YP_006924703.1| - 0.17 12.0 0.5 0.19 11.9 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2946) DDE_3 PF13358.1 gi|410672334|ref|YP_006924705.1| - 1.1e-24 86.8 0.5 2.4e-24 85.7 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_29 PF13551.1 gi|410672334|ref|YP_006924705.1| - 1.8e-16 60.2 0.0 5.6e-16 58.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|410672334|ref|YP_006924705.1| - 1.9e-10 41.4 0.7 8.6e-10 39.2 0.0 2.5 3 0 0 3 3 3 1 Homeodomain-like domain rve PF00665.21 gi|410672334|ref|YP_006924705.1| - 5.8e-09 36.1 0.0 1.3e-08 34.9 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_33 PF13592.1 gi|410672334|ref|YP_006924705.1| - 1.4e-08 34.1 0.1 4.3e-08 32.5 0.1 1.9 1 0 0 1 1 1 1 Winged helix-turn helix DDE_1 PF03184.14 gi|410672334|ref|YP_006924705.1| - 6.8e-08 31.9 0.3 6.8e-08 31.9 0.2 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_23 PF13384.1 gi|410672334|ref|YP_006924705.1| - 3.2e-06 26.6 0.1 1e-05 25.0 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|410672334|ref|YP_006924705.1| - 2.7e-05 24.0 0.0 6.4e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DDE_Tnp_ISAZ013 PF07592.6 gi|410672334|ref|YP_006924705.1| - 0.025 13.3 0.1 0.065 11.9 0.0 1.6 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HTH_21 PF13276.1 gi|410672334|ref|YP_006924705.1| - 0.093 12.7 0.1 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 HTH-like domain Lactamase_B PF00753.22 gi|410672335|ref|YP_006924706.1| - 1.4e-09 37.8 1.7 1.3e-08 34.7 1.0 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|410672335|ref|YP_006924706.1| - 1.6e-06 27.8 0.3 2.4e-06 27.2 0.2 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|410672335|ref|YP_006924706.1| - 0.0018 18.0 1.1 0.0038 16.9 0.8 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF498 PF04430.9 gi|410672335|ref|YP_006924706.1| - 0.076 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF498/DUF598) DUF3006 PF11213.3 gi|410672336|ref|YP_006924707.1| - 1.2e-21 76.2 0.6 1.3e-21 76.1 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) Hypoth_Ymh PF09509.5 gi|410672337|ref|YP_006924708.1| - 2e-17 62.9 0.0 2e-17 62.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (Hypoth_ymh) DUF1724 PF08350.5 gi|410672338|ref|YP_006924709.1| - 6e-12 44.9 0.2 1.4e-11 43.7 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) Strep_67kDa_ant PF06100.6 gi|410672339|ref|YP_006924710.1| - 6.3e-05 21.5 0.0 6.9e-05 21.3 0.0 1.0 1 0 0 1 1 1 1 Streptococcal 67 kDa myosin-cross-reactive antigen like family DUF1269 PF06897.7 gi|410672340|ref|YP_006924711.1| - 2.3e-10 40.4 0.3 4.7e-10 39.4 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1269) Gly-zipper_YMGG PF13441.1 gi|410672340|ref|YP_006924711.1| - 0.0046 16.4 8.6 0.0096 15.4 6.0 1.5 1 0 0 1 1 1 1 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.1 gi|410672340|ref|YP_006924711.1| - 0.0073 15.9 10.4 0.014 15.0 7.2 1.4 1 0 0 1 1 1 1 Glycine zipper Gly-zipper_OmpA PF13436.1 gi|410672340|ref|YP_006924711.1| - 0.0092 15.6 1.3 0.0092 15.6 0.9 2.0 2 0 0 2 2 2 1 Glycine-zipper containing OmpA-like membrane domain DUF456 PF04306.8 gi|410672340|ref|YP_006924711.1| - 0.033 14.2 2.9 0.055 13.5 2.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF456) DUF3373 PF11853.3 gi|410672340|ref|YP_006924711.1| - 0.15 10.5 10.2 0.2 10.1 7.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) Bacteriocin_IIc PF10439.4 gi|410672340|ref|YP_006924711.1| - 0.16 12.1 8.5 0.29 11.3 5.9 1.3 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Baculo_PEP_C PF04513.7 gi|410672340|ref|YP_006924711.1| - 0.21 11.3 4.5 0.25 11.1 1.5 2.0 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Tim17 PF02466.14 gi|410672340|ref|YP_006924711.1| - 0.28 11.2 2.4 0.54 10.3 1.6 1.4 1 0 0 1 1 1 0 Tim17/Tim22/Tim23/Pmp24 family TBPIP PF07106.8 gi|410672340|ref|YP_006924711.1| - 0.58 9.6 14.6 0.96 8.9 10.1 1.3 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Apolipoprotein PF01442.13 gi|410672340|ref|YP_006924711.1| - 0.91 8.9 14.8 2.5 7.5 10.3 1.6 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF972 PF06156.8 gi|410672340|ref|YP_006924711.1| - 1.9 8.8 9.4 4.7 7.6 6.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF972) DUF2317 PF10079.4 gi|410672340|ref|YP_006924711.1| - 2.5 6.6 12.8 3.2 6.2 8.9 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2317) Atg14 PF10186.4 gi|410672340|ref|YP_006924711.1| - 4 6.2 12.0 5.4 5.8 8.3 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Rick_17kDa_Anti PF05433.10 gi|410672340|ref|YP_006924711.1| - 4.1 7.1 15.4 16 5.2 10.7 2.0 1 1 0 1 1 1 0 Glycine zipper 2TM domain DUF4407 PF14362.1 gi|410672340|ref|YP_006924711.1| - 5.3 5.9 20.6 9.7 5.0 14.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Ax_dynein_light PF10211.4 gi|410672340|ref|YP_006924711.1| - 6.9 6.4 16.7 5 6.9 9.7 2.0 1 1 1 2 2 2 0 Axonemal dynein light chain DUF1664 PF07889.7 gi|410672340|ref|YP_006924711.1| - 7.2 6.4 12.5 18 5.1 6.4 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) OmpH PF03938.9 gi|410672340|ref|YP_006924711.1| - 8.9 6.2 25.3 13 5.6 17.6 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Striatin PF08232.7 gi|410672340|ref|YP_006924711.1| - 9.2 6.5 14.9 13 6.0 10.3 1.2 1 0 0 1 1 1 0 Striatin family DUF1724 PF08350.5 gi|410672343|ref|YP_006924714.1| - 3.2e-11 42.5 0.7 6.8e-11 41.5 0.5 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) SfsA PF03749.8 gi|410672345|ref|YP_006924716.1| - 0.027 13.9 0.0 0.063 12.7 0.0 1.7 1 1 0 1 1 1 0 Sugar fermentation stimulation protein LAGLIDADG_WhiA PF14527.1 gi|410672345|ref|YP_006924716.1| - 0.088 12.6 0.6 0.26 11.1 0.4 1.8 1 0 0 1 1 1 0 WhiA LAGLIDADG-like domain Casein_kappa PF00997.13 gi|410672345|ref|YP_006924716.1| - 0.1 12.2 0.2 0.23 11.1 0.2 1.6 1 0 0 1 1 1 0 Kappa casein Antitoxin-MazE PF04014.13 gi|410672346|ref|YP_006924717.1| - 0.059 13.1 0.0 0.061 13.0 0.0 1.2 1 0 0 1 1 1 0 Antidote-toxin recognition MazE RicinB_lectin_2 PF14200.1 gi|410672347|ref|YP_006924718.1| - 6e-18 65.1 5.5 3.6e-12 46.5 0.3 4.3 3 1 1 4 4 4 2 Ricin-type beta-trefoil lectin domain-like Fascin PF06268.8 gi|410672347|ref|YP_006924718.1| - 1.8e-10 40.8 0.3 0.0015 18.6 0.0 4.4 2 2 3 5 5 5 5 Fascin domain FRG1 PF06229.7 gi|410672347|ref|YP_006924718.1| - 1.2e-08 34.6 0.6 1.7e-05 24.3 0.1 2.5 1 1 1 2 2 2 2 FRG1-like family Ricin_B_lectin PF00652.17 gi|410672347|ref|YP_006924718.1| - 5.3e-07 29.7 0.3 0.00021 21.3 0.2 2.1 1 1 0 2 2 2 2 Ricin-type beta-trefoil lectin domain MS_channel PF00924.13 gi|410672349|ref|YP_006924720.1| - 5.1e-38 130.4 0.3 8.7e-38 129.7 0.2 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel Ion_trans PF00520.26 gi|410672349|ref|YP_006924720.1| - 0.012 14.9 2.5 0.017 14.4 1.7 1.3 1 0 0 1 1 1 0 Ion transport protein Aa_trans PF01490.13 gi|410672349|ref|YP_006924720.1| - 0.022 13.2 6.2 0.029 12.8 4.3 1.1 1 0 0 1 1 1 0 Transmembrane amino acid transporter protein ATP-gua_Ptrans PF00217.14 gi|410672349|ref|YP_006924720.1| - 0.057 12.7 0.0 0.085 12.1 0.0 1.2 1 0 0 1 1 1 0 ATP:guanido phosphotransferase, C-terminal catalytic domain AAA_14 PF13173.1 gi|410672350|ref|YP_006924721.1| - 0.072 13.0 0.0 0.2 11.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|410672350|ref|YP_006924721.1| - 0.74 10.1 5.7 5.9 7.1 4.0 2.1 1 1 0 1 1 1 0 AAA domain SNARE_assoc PF09335.6 gi|410672351|ref|YP_006924722.1| - 0.00073 19.7 0.2 0.00082 19.5 0.1 1.0 1 0 0 1 1 1 1 SNARE associated Golgi protein DUF1724 PF08350.5 gi|410672352|ref|YP_006924723.1| - 5.4e-15 54.6 0.5 2.8e-14 52.3 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) Radical_SAM PF04055.16 gi|410672353|ref|YP_006924724.1| - 4.7e-21 75.6 0.0 1.7e-20 73.8 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|410672353|ref|YP_006924724.1| - 4.9e-05 23.4 0.0 4.9e-05 23.4 0.0 2.0 3 0 0 3 3 3 1 4Fe-4S single cluster domain zinc_ribbon_2 PF13240.1 gi|410672353|ref|YP_006924724.1| - 0.001 18.5 5.3 0.0014 18.0 0.7 2.9 2 1 1 3 3 3 2 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|410672353|ref|YP_006924724.1| - 0.015 14.8 2.8 2.3 7.7 0.0 2.8 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.2 gi|410672353|ref|YP_006924724.1| - 0.024 14.4 2.9 0.024 14.4 2.0 3.1 3 0 0 3 3 3 0 Double zinc ribbon Fer4_14 PF13394.1 gi|410672353|ref|YP_006924724.1| - 0.14 12.2 0.0 0.14 12.2 0.0 2.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain IBR PF01485.16 gi|410672353|ref|YP_006924724.1| - 0.48 10.3 9.7 0.074 12.9 1.2 2.9 3 0 0 3 3 3 0 IBR domain zf-ribbon_3 PF13248.1 gi|410672353|ref|YP_006924724.1| - 5.4 6.3 12.0 2.2 7.5 0.7 2.9 2 1 2 4 4 4 0 zinc-ribbon domain Laminin_G_3 PF13385.1 gi|410672355|ref|YP_006924726.1| - 4e-26 92.1 4.3 4e-26 92.1 3.0 2.9 2 1 0 2 2 1 1 Concanavalin A-like lectin/glucanases superfamily PKD PF00801.15 gi|410672355|ref|YP_006924726.1| - 3.5e-18 65.1 3.5 3.5e-18 65.1 2.5 2.5 3 0 0 3 3 3 1 PKD domain DUF1628 PF07790.6 gi|410672355|ref|YP_006924726.1| - 5e-18 65.6 1.0 5e-18 65.6 0.7 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) Big_3_4 PF13754.1 gi|410672355|ref|YP_006924726.1| - 2.2e-05 24.6 11.8 3.1e-05 24.2 6.9 2.4 2 0 0 2 2 1 1 Bacterial Ig-like domain (group 3) ChitinaseA_N PF08329.5 gi|410672355|ref|YP_006924726.1| - 0.00065 19.4 0.0 0.0021 17.8 0.0 1.8 1 0 0 1 1 1 1 Chitinase A, N-terminal domain Y_Y_Y PF07495.8 gi|410672355|ref|YP_006924726.1| - 0.01 15.5 0.4 0.053 13.2 0.0 2.5 2 0 0 2 2 2 0 Y_Y_Y domain Laminin_G_2 PF02210.19 gi|410672355|ref|YP_006924726.1| - 0.016 15.2 0.9 1 9.3 0.0 3.2 2 1 0 2 2 2 0 Laminin G domain DUF807 PF05660.6 gi|410672355|ref|YP_006924726.1| - 0.05 13.2 0.0 0.14 11.7 0.0 1.7 1 0 0 1 1 1 0 Coxiella burnetii protein of unknown function (DUF807) DUF4625 PF15418.1 gi|410672355|ref|YP_006924726.1| - 0.061 13.4 0.1 0.25 11.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4625) He_PIG PF05345.7 gi|410672355|ref|YP_006924726.1| - 0.25 11.3 7.4 0.09 12.8 0.6 3.3 3 0 0 3 3 3 0 Putative Ig domain Rib PF08428.5 gi|410672355|ref|YP_006924726.1| - 0.27 11.0 4.4 0.28 10.9 1.4 2.2 2 0 0 2 2 2 0 Rib/alpha-like repeat T2SF PF00482.18 gi|410672356|ref|YP_006924727.1| - 1.9e-28 98.8 2.7 2.1e-16 59.9 0.6 3.3 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|410672357|ref|YP_006924728.1| - 4e-44 150.5 0.0 5.8e-44 150.0 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|410672357|ref|YP_006924728.1| - 0.075 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arginosuc_synth PF00764.14 gi|410672357|ref|YP_006924728.1| - 0.086 11.8 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 Arginosuccinate synthase PfkB PF00294.19 gi|410672358|ref|YP_006924729.1| - 6e-52 176.6 0.0 7.5e-52 176.3 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PTCB-BRCT PF12738.2 gi|410672358|ref|YP_006924729.1| - 0.14 12.0 0.0 0.55 10.1 0.0 2.0 2 0 0 2 2 2 0 twin BRCT domain DUF555 PF04475.7 gi|410672359|ref|YP_006924730.1| - 4.9e-50 167.7 0.0 5.8e-50 167.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) Dodecin PF07311.7 gi|410672359|ref|YP_006924730.1| - 0.079 13.0 0.1 0.52 10.3 0.0 2.3 3 0 0 3 3 3 0 Dodecin UPF0081 PF03652.10 gi|410672359|ref|YP_006924730.1| - 0.12 12.5 0.0 0.28 11.2 0.0 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0081) DUF357 PF04010.8 gi|410672360|ref|YP_006924731.1| - 3.4e-28 97.1 0.2 3.9e-28 96.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) DUF87 PF01935.12 gi|410672361|ref|YP_006924732.1| - 6.1e-38 130.9 0.0 1.1e-37 130.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|410672361|ref|YP_006924732.1| - 6.4e-25 88.2 0.0 9e-25 87.7 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain HAS-barrel PF09378.5 gi|410672361|ref|YP_006924732.1| - 0.0001 22.1 0.0 0.00039 20.2 0.0 2.1 1 0 0 1 1 1 1 HAS barrel domain TrwB_AAD_bind PF10412.4 gi|410672361|ref|YP_006924732.1| - 0.0004 19.1 0.0 0.019 13.6 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|410672361|ref|YP_006924732.1| - 0.00047 19.6 0.1 0.063 12.7 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family DUF853 PF05872.7 gi|410672361|ref|YP_006924732.1| - 0.0044 15.4 0.0 0.34 9.2 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|410672361|ref|YP_006924732.1| - 0.0072 15.8 0.0 0.13 11.6 0.0 2.3 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) TraG-D_C PF12696.2 gi|410672361|ref|YP_006924732.1| - 0.043 13.6 0.0 0.092 12.6 0.0 1.5 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG AAA_22 PF13401.1 gi|410672361|ref|YP_006924732.1| - 0.064 13.3 0.3 2.7 8.1 0.0 2.6 3 1 0 3 3 3 0 AAA domain T2SE PF00437.15 gi|410672361|ref|YP_006924732.1| - 0.11 11.4 0.0 0.26 10.1 0.0 1.7 1 0 0 1 1 1 0 Type II/IV secretion system protein ResIII PF04851.10 gi|410672361|ref|YP_006924732.1| - 0.12 12.2 0.0 0.8 9.4 0.0 2.1 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit TP_methylase PF00590.15 gi|410672362|ref|YP_006924733.1| - 2.1e-17 63.5 0.0 2.6e-17 63.2 0.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Cpn60_TCP1 PF00118.19 gi|410672363|ref|YP_006924734.1| - 7.1e-160 532.8 12.9 8.1e-160 532.6 9.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Kelch_4 PF13418.1 gi|410672364|ref|YP_006924735.1| - 8.2e-29 99.1 18.4 9e-08 31.7 0.0 4.5 4 0 0 4 4 4 4 Galactose oxidase, central domain Kelch_5 PF13854.1 gi|410672364|ref|YP_006924735.1| - 4e-18 64.9 1.5 0.0011 18.8 0.0 4.6 4 0 0 4 4 4 4 Kelch motif Kelch_6 PF13964.1 gi|410672364|ref|YP_006924735.1| - 8.1e-14 51.1 7.7 0.011 15.8 0.2 4.6 4 0 0 4 4 4 4 Kelch motif Glyoxal_oxid_N PF07250.6 gi|410672364|ref|YP_006924735.1| - 2.1e-12 46.6 1.0 0.00022 20.3 0.0 3.7 1 1 3 4 4 4 4 Glyoxal oxidase N-terminus PKD PF00801.15 gi|410672364|ref|YP_006924735.1| - 5.8e-12 45.1 10.3 6.9e-06 25.7 0.1 3.7 3 0 0 3 3 3 3 PKD domain Kelch_2 PF07646.10 gi|410672364|ref|YP_006924735.1| - 9.7e-11 40.9 17.1 0.027 14.2 0.1 5.0 5 0 0 5 5 5 4 Kelch motif Kelch_3 PF13415.1 gi|410672364|ref|YP_006924735.1| - 2.2e-10 40.4 24.1 0.00022 21.3 0.8 5.3 5 0 0 5 5 5 3 Galactose oxidase, central domain BNR_2 PF13088.1 gi|410672364|ref|YP_006924735.1| - 1.2e-07 31.3 6.6 1.7e-07 30.8 4.6 1.2 1 0 0 1 1 1 1 BNR repeat-like domain Kelch_1 PF01344.20 gi|410672364|ref|YP_006924735.1| - 6.2e-06 25.6 1.0 1.4 8.4 0.0 4.6 4 0 0 4 4 4 2 Kelch motif BNR PF02012.15 gi|410672364|ref|YP_006924735.1| - 0.00053 19.4 15.4 0.042 13.6 0.6 4.0 3 0 0 3 3 3 2 BNR/Asp-box repeat Nuc_N PF14448.1 gi|410672364|ref|YP_006924735.1| - 0.14 11.7 2.6 35 4.0 0.0 3.8 4 0 0 4 4 4 0 Nuclease N terminal Kelch_4 PF13418.1 gi|410672365|ref|YP_006924736.1| - 1.3e-35 120.9 26.1 3.8e-07 29.7 0.9 6.4 6 0 0 6 6 6 5 Galactose oxidase, central domain Kelch_6 PF13964.1 gi|410672365|ref|YP_006924736.1| - 2.4e-27 93.9 11.1 0.00046 20.2 0.1 6.0 6 0 0 6 6 6 5 Kelch motif Glyoxal_oxid_N PF07250.6 gi|410672365|ref|YP_006924736.1| - 3.3e-19 68.9 2.9 0.0077 15.3 0.0 5.0 1 1 4 5 5 5 5 Glyoxal oxidase N-terminus Kelch_3 PF13415.1 gi|410672365|ref|YP_006924736.1| - 1.4e-18 66.4 34.8 0.00019 21.5 1.1 6.1 6 0 0 6 6 6 5 Galactose oxidase, central domain Kelch_5 PF13854.1 gi|410672365|ref|YP_006924736.1| - 5.8e-18 64.4 5.5 0.0035 17.2 0.0 5.6 6 0 0 6 6 6 5 Kelch motif Kelch_2 PF07646.10 gi|410672365|ref|YP_006924736.1| - 7.1e-16 57.2 16.0 0.012 15.3 0.0 6.1 6 0 0 6 6 6 5 Kelch motif Kelch_1 PF01344.20 gi|410672365|ref|YP_006924736.1| - 8.7e-13 47.5 10.3 0.16 11.5 0.1 6.4 6 0 0 6 6 6 5 Kelch motif BNR_2 PF13088.1 gi|410672365|ref|YP_006924736.1| - 3.6e-12 46.1 28.6 1e-07 31.5 7.7 2.3 1 1 1 2 2 2 2 BNR repeat-like domain Secretin PF00263.16 gi|410672365|ref|YP_006924736.1| - 2.5e-11 43.2 0.0 1.4 8.3 0.0 5.0 1 1 4 5 5 5 5 Bacterial type II and III secretion system protein BNR PF02012.15 gi|410672365|ref|YP_006924736.1| - 2.3e-09 35.6 28.6 0.038 13.7 0.9 6.6 6 0 0 6 6 6 5 BNR/Asp-box repeat Nuc_N PF14448.1 gi|410672365|ref|YP_006924736.1| - 0.004 16.6 5.4 26 4.4 0.0 5.1 5 0 0 5 5 5 0 Nuclease N terminal DUF4185 PF13810.1 gi|410672365|ref|YP_006924736.1| - 0.0078 15.1 39.7 0.6 8.9 1.1 5.1 1 1 4 5 5 5 5 Domain of unknown function (DUF4185) ARL6IP6 PF15062.1 gi|410672365|ref|YP_006924736.1| - 0.011 15.5 3.9 66 3.5 0.0 4.1 4 0 0 4 4 4 0 Haemopoietic lineage transmembrane helix DUF588 PF04535.7 gi|410672365|ref|YP_006924736.1| - 0.24 10.9 1.9 1.2e+02 2.1 0.0 3.9 4 0 0 4 4 4 0 Domain of unknown function (DUF588) Mso1_C PF14477.1 gi|410672365|ref|YP_006924736.1| - 0.26 11.6 27.0 11 6.4 0.8 5.7 1 1 3 5 5 5 0 Membrane-polarising domain of Mso1 Peptidase_M16_C PF05193.16 gi|410672365|ref|YP_006924736.1| - 0.32 10.6 3.0 92 2.6 0.0 3.8 4 0 0 4 4 4 0 Peptidase M16 inactive domain Kelch_4 PF13418.1 gi|410672366|ref|YP_006924737.1| - 3.4e-79 260.4 100.4 5.2e-07 29.3 0.8 15.4 15 0 0 15 15 15 15 Galactose oxidase, central domain Kelch_6 PF13964.1 gi|410672366|ref|YP_006924737.1| - 8.4e-53 174.4 56.4 0.0029 17.7 0.2 15.3 15 0 0 15 15 15 14 Kelch motif Kelch_5 PF13854.1 gi|410672366|ref|YP_006924737.1| - 1.1e-42 143.2 58.3 0.0053 16.6 0.0 15.6 16 0 0 16 16 16 10 Kelch motif Glyoxal_oxid_N PF07250.6 gi|410672366|ref|YP_006924737.1| - 5.2e-41 140.3 32.7 4.5e-05 22.6 0.2 10.3 1 1 13 14 14 14 14 Glyoxal oxidase N-terminus BNR_2 PF13088.1 gi|410672366|ref|YP_006924737.1| - 3.3e-40 138.1 61.3 3.1e-11 43.0 7.0 6.1 1 1 5 6 6 6 6 BNR repeat-like domain Kelch_2 PF07646.10 gi|410672366|ref|YP_006924737.1| - 1.2e-28 97.7 67.2 0.022 14.5 0.3 15.7 15 0 0 15 15 15 14 Kelch motif BNR PF02012.15 gi|410672366|ref|YP_006924737.1| - 9.8e-28 91.3 108.3 0.13 12.1 0.9 15.5 14 0 0 14 14 14 14 BNR/Asp-box repeat Secretin PF00263.16 gi|410672366|ref|YP_006924737.1| - 6.3e-23 80.9 7.4 2.9 7.2 0.0 14.5 1 1 14 15 15 15 6 Bacterial type II and III secretion system protein Kelch_1 PF01344.20 gi|410672366|ref|YP_006924737.1| - 2e-12 46.4 55.1 0.73 9.4 0.0 15.4 15 0 0 15 15 15 7 Kelch motif Lgl_C PF08596.5 gi|410672366|ref|YP_006924737.1| - 9.7e-10 37.4 1.9 35 2.6 0.0 11.3 1 1 14 15 15 15 0 Lethal giant larvae(Lgl) like, C-terminal DUF4185 PF13810.1 gi|410672366|ref|YP_006924737.1| - 1.7e-08 33.7 98.7 0.88 8.4 0.5 14.1 2 2 11 14 14 14 12 Domain of unknown function (DUF4185) PKD PF00801.15 gi|410672366|ref|YP_006924737.1| - 2.2e-07 30.5 14.6 1.4e-05 24.7 0.5 4.3 3 0 0 3 3 2 2 PKD domain DUF3788 PF12663.2 gi|410672366|ref|YP_006924737.1| - 0.081 12.6 0.8 87 2.7 0.0 5.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3788) PKD PF00801.15 gi|410672367|ref|YP_006924738.1| - 3.8e-69 228.3 69.7 3.2e-16 58.8 5.8 6.2 6 0 0 6 6 6 6 PKD domain Chitin_synth_1 PF01644.12 gi|410672367|ref|YP_006924738.1| - 0.00032 20.5 0.0 1.3 8.7 0.0 3.2 2 1 1 3 3 3 2 Chitin synthase DUF3324 PF11797.3 gi|410672367|ref|YP_006924738.1| - 0.0085 15.8 3.8 0.67 9.6 0.0 4.0 5 0 0 5 5 5 1 Protein of unknown function C-terminal (DUF3324) DUF4605 PF15378.1 gi|410672368|ref|YP_006924739.1| - 0.083 12.6 0.3 0.15 11.8 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4605) Peptidase_S68 PF10461.4 gi|410672368|ref|YP_006924739.1| - 0.092 12.4 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 Peptidase S68 DUF2119 PF09892.4 gi|410672369|ref|YP_006924740.1| - 1.7e-65 219.9 0.0 2.1e-65 219.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2119) YgaB PF14182.1 gi|410672369|ref|YP_006924740.1| - 0.052 13.7 0.2 0.11 12.7 0.1 1.4 1 0 0 1 1 1 0 YgaB-like protein S4 PF01479.20 gi|410672370|ref|YP_006924741.1| - 6.3e-11 41.5 0.0 1.3e-10 40.5 0.0 1.6 1 0 0 1 1 1 1 S4 domain FtsJ PF01728.14 gi|410672370|ref|YP_006924741.1| - 3.8e-08 33.5 0.0 5.8e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.1 gi|410672370|ref|YP_006924741.1| - 4.4e-07 29.6 0.0 5.8e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|410672370|ref|YP_006924741.1| - 5.8e-07 30.0 0.0 8.8e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|410672370|ref|YP_006924741.1| - 8.2e-07 28.1 0.0 1.1e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_23 PF13489.1 gi|410672370|ref|YP_006924741.1| - 6.3e-06 26.0 0.0 8.8e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|410672370|ref|YP_006924741.1| - 1.8e-05 24.7 0.0 3.2e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|410672370|ref|YP_006924741.1| - 4.1e-05 23.9 0.0 6.2e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|410672370|ref|YP_006924741.1| - 0.00043 21.0 0.0 0.0011 19.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|410672370|ref|YP_006924741.1| - 0.0014 19.0 0.0 0.002 18.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain S4_2 PF13275.1 gi|410672370|ref|YP_006924741.1| - 0.0077 15.7 0.1 0.015 14.8 0.1 1.5 1 0 0 1 1 1 1 S4 domain Methyltransf_8 PF05148.10 gi|410672370|ref|YP_006924741.1| - 0.056 13.0 0.0 0.075 12.6 0.0 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase Na_H_Exchanger PF00999.16 gi|410672371|ref|YP_006924742.1| - 7e-36 123.5 25.4 8.9e-36 123.2 17.6 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF2273 PF10031.4 gi|410672371|ref|YP_006924742.1| - 0.029 13.9 8.2 2.4 7.8 0.0 4.4 3 0 0 3 3 3 0 Small integral membrane protein (DUF2273) HAD_2 PF13419.1 gi|410672372|ref|YP_006924743.1| - 6.1e-23 81.9 0.0 7.3e-23 81.6 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|410672372|ref|YP_006924743.1| - 2e-10 41.4 0.3 6e-09 36.6 0.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|410672372|ref|YP_006924743.1| - 0.00011 21.8 0.0 0.00023 20.7 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|410672372|ref|YP_006924743.1| - 0.00024 21.3 0.1 0.00036 20.7 0.1 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase NT5C PF06941.7 gi|410672372|ref|YP_006924743.1| - 0.051 13.0 0.1 0.11 12.0 0.1 1.6 1 1 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Oxidored_FMN PF00724.15 gi|410672373|ref|YP_006924744.1| - 2.7e-62 210.7 0.0 3.1e-62 210.5 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.16 gi|410672373|ref|YP_006924744.1| - 0.0021 17.3 0.0 0.014 14.7 0.0 2.1 2 1 0 2 2 2 1 Histidine biosynthesis protein Dus PF01207.12 gi|410672373|ref|YP_006924744.1| - 0.0055 15.5 0.1 0.032 13.0 0.0 1.9 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) HMGL-like PF00682.14 gi|410672373|ref|YP_006924744.1| - 0.13 11.8 0.1 0.37 10.4 0.0 1.7 2 0 0 2 2 2 0 HMGL-like Cytochrom_C_asm PF01578.15 gi|410672374|ref|YP_006924745.1| - 9.9e-27 93.8 17.7 9.9e-27 93.8 12.3 1.9 2 0 0 2 2 2 1 Cytochrome C assembly protein YesK PF14150.1 gi|410672374|ref|YP_006924745.1| - 0.31 11.1 0.2 0.31 11.1 0.1 3.7 2 2 0 3 3 3 0 YesK-like protein DUF2762 PF10960.3 gi|410672374|ref|YP_006924745.1| - 0.44 10.2 1.9 0.44 10.2 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2762) CcmB PF03379.8 gi|410672375|ref|YP_006924746.1| - 8.8e-36 123.1 16.5 9.7e-36 122.9 11.4 1.0 1 0 0 1 1 1 1 CcmB protein ABC2_membrane PF01061.19 gi|410672375|ref|YP_006924746.1| - 7.3e-13 48.1 11.3 7.3e-13 48.1 7.8 1.5 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|410672375|ref|YP_006924746.1| - 3.5e-09 36.1 19.6 2.2e-08 33.5 13.6 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|410672375|ref|YP_006924746.1| - 8.1e-08 31.4 17.9 2e-07 30.1 12.4 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|410672375|ref|YP_006924746.1| - 3.3e-06 26.4 17.8 5.1e-06 25.8 12.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|410672376|ref|YP_006924747.1| - 2.6e-34 118.4 0.0 3.5e-34 118.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|410672376|ref|YP_006924747.1| - 4e-11 43.4 0.7 0.00022 21.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|410672376|ref|YP_006924747.1| - 1.5e-05 24.3 0.2 3.1e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|410672376|ref|YP_006924747.1| - 4.9e-05 23.7 0.0 6.1e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|410672376|ref|YP_006924747.1| - 0.00026 21.2 0.3 0.0015 18.7 0.2 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|410672376|ref|YP_006924747.1| - 0.00063 19.2 0.0 0.004 16.6 0.0 1.9 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SMC_N PF02463.14 gi|410672376|ref|YP_006924747.1| - 0.00084 18.6 0.7 0.054 12.7 0.1 2.1 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.10 gi|410672376|ref|YP_006924747.1| - 0.0032 16.2 0.0 0.0034 16.1 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein cobW PF02492.14 gi|410672376|ref|YP_006924747.1| - 0.0034 16.8 0.5 0.0059 16.0 0.1 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.1 gi|410672376|ref|YP_006924747.1| - 0.004 15.6 0.2 0.0052 15.3 0.0 1.3 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|410672376|ref|YP_006924747.1| - 0.0041 16.8 0.0 0.0059 16.3 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_15 PF13175.1 gi|410672376|ref|YP_006924747.1| - 0.0041 16.2 0.0 0.1 11.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain UPF0079 PF02367.12 gi|410672376|ref|YP_006924747.1| - 0.0064 16.1 0.1 0.03 13.9 0.1 1.9 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|410672376|ref|YP_006924747.1| - 0.0067 16.5 0.4 0.028 14.5 0.3 2.1 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|410672376|ref|YP_006924747.1| - 0.012 15.1 0.1 0.031 13.7 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|410672376|ref|YP_006924747.1| - 0.013 15.1 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|410672376|ref|YP_006924747.1| - 0.021 14.2 0.0 0.036 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|410672376|ref|YP_006924747.1| - 0.024 15.4 0.3 0.031 15.1 0.2 1.7 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|410672376|ref|YP_006924747.1| - 0.027 13.5 0.0 0.044 12.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DUF258 PF03193.11 gi|410672376|ref|YP_006924747.1| - 0.03 13.5 0.1 0.052 12.7 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF258 AAA_24 PF13479.1 gi|410672376|ref|YP_006924747.1| - 0.042 13.4 0.4 0.071 12.6 0.3 1.3 1 0 0 1 1 1 0 AAA domain RecA PF00154.16 gi|410672376|ref|YP_006924747.1| - 0.045 12.8 0.0 0.077 12.0 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein PIF1 PF05970.9 gi|410672376|ref|YP_006924747.1| - 0.063 12.2 0.1 0.16 10.9 0.1 1.6 1 0 0 1 1 1 0 PIF1-like helicase AAA_16 PF13191.1 gi|410672376|ref|YP_006924747.1| - 0.067 13.1 0.0 0.09 12.7 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.1 gi|410672376|ref|YP_006924747.1| - 0.074 12.9 0.0 0.1 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|410672376|ref|YP_006924747.1| - 0.074 12.2 0.1 0.44 9.6 0.0 2.1 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|410672376|ref|YP_006924747.1| - 0.08 12.9 0.2 0.17 11.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|410672376|ref|YP_006924747.1| - 0.11 11.3 0.0 0.26 10.1 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.17 gi|410672376|ref|YP_006924747.1| - 0.13 12.4 0.0 0.37 10.9 0.0 1.8 1 1 0 1 1 1 0 RNA helicase AAA_18 PF13238.1 gi|410672376|ref|YP_006924747.1| - 0.14 12.4 0.5 0.37 11.1 0.0 1.9 2 1 0 2 2 2 0 AAA domain DUF1724 PF08350.5 gi|410672377|ref|YP_006924748.1| - 3.4e-15 55.3 0.1 8.1e-15 54.1 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) DUF3452 PF11934.3 gi|410672377|ref|YP_006924748.1| - 0.12 11.7 1.2 0.16 11.3 0.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3452) DUF4163 PF13739.1 gi|410672377|ref|YP_006924748.1| - 0.13 13.0 2.5 0.18 12.5 1.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4163) MSP7_C PF12948.2 gi|410672377|ref|YP_006924748.1| - 0.2 11.8 3.3 0.2 11.8 1.4 1.8 1 1 0 1 1 1 0 MSP7-like protein C-terminal domain