#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
DUF1724	PF08350.10	gi|410669211|ref|YP_006921582.1|	-	5.2e-22	77.8	0.1	9e-22	77.0	0.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
DUF772	PF05598.11	gi|410669212|ref|YP_006921583.1|	-	3.3e-22	78.3	0.0	6.9e-22	77.3	0.0	1.5	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|410669212|ref|YP_006921583.1|	-	4.4e-16	59.2	0.2	8.2e-16	58.3	0.2	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_4	PF13359.6	gi|410669212|ref|YP_006921583.1|	-	0.00013	21.7	0.1	0.00024	20.8	0.1	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1_3	PF13612.6	gi|410669212|ref|YP_006921583.1|	-	0.0005	20.1	0.5	0.00097	19.2	0.1	1.7	2	0	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|410669212|ref|YP_006921583.1|	-	0.0021	18.2	0.6	0.0041	17.3	0.6	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
LysE	PF01810.18	gi|410669215|ref|YP_006921586.1|	-	1.1e-25	90.3	16.7	1.3e-25	90.0	16.7	1.1	1	0	0	1	1	1	1	LysE	type	translocator
DUF1724	PF08350.10	gi|410669216|ref|YP_006921587.1|	-	1.2e-22	79.8	0.0	2.7e-22	78.7	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
HTH_20	PF12840.7	gi|410669216|ref|YP_006921587.1|	-	0.14	12.2	0.0	0.3	11.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF1724	PF08350.10	gi|410669217|ref|YP_006921588.1|	-	1.7e-21	76.1	1.3	3.4e-21	75.1	1.3	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
FidL_like	PF15941.5	gi|410669217|ref|YP_006921588.1|	-	0.97	9.9	7.4	7.1	7.2	1.0	3.2	2	2	1	3	3	3	0	FidL-like	putative	membrane	protein
DUF1724	PF08350.10	gi|410669218|ref|YP_006921589.1|	-	1.6e-21	76.2	0.5	7.1e-21	74.1	0.1	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1724)
DDE_3	PF13358.6	gi|410669219|ref|YP_006921590.1|	-	6.1e-23	81.2	0.1	6.1e-23	81.2	0.1	1.4	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
DDE_1	PF03184.19	gi|410669219|ref|YP_006921590.1|	-	6e-08	32.5	0.2	7.4e-08	32.2	0.2	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|410669219|ref|YP_006921590.1|	-	1.2e-05	25.5	0.0	1.8e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	Integrase	core	domain
DDE_Tnp_ISAZ013	PF07592.11	gi|410669219|ref|YP_006921590.1|	-	0.0076	15.3	0.1	0.01	14.9	0.1	1.2	1	0	0	1	1	1	1	Rhodopirellula	transposase	DDE	domain
HTH_32	PF13565.6	gi|410669220|ref|YP_006921591.1|	-	1.1e-12	48.4	0.0	1.7e-12	47.8	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|410669220|ref|YP_006921591.1|	-	1e-08	35.1	0.0	2e-08	34.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_33	PF13592.6	gi|410669220|ref|YP_006921591.1|	-	2.2e-08	33.6	0.0	4.7e-08	32.6	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|410669220|ref|YP_006921591.1|	-	1.1e-06	28.2	0.1	4.9e-06	26.2	0.0	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|410669220|ref|YP_006921591.1|	-	0.00083	19.4	0.0	0.0019	18.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_ABP1_N	PF18107.1	gi|410669220|ref|YP_006921591.1|	-	0.0031	17.2	0.1	0.0053	16.4	0.1	1.3	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
HTH_45	PF14947.6	gi|410669221|ref|YP_006921592.1|	-	0.019	14.9	0.3	0.037	14.0	0.3	1.7	1	1	0	1	1	1	0	Winged	helix-turn-helix
RNA_pol_Rpa2_4	PF06883.12	gi|410669221|ref|YP_006921592.1|	-	0.045	13.8	0.0	7.2	6.7	0.0	2.3	2	0	0	2	2	2	0	RNA	polymerase	I,	Rpa2	specific	domain
SOR_SNZ	PF01680.17	gi|410669223|ref|YP_006921594.1|	-	7.5e-20	71.6	1.1	8e-20	71.5	1.1	1.0	1	0	0	1	1	1	1	SOR/SNZ	family
GSDH	PF07995.11	gi|410669225|ref|YP_006921596.1|	-	1.1e-40	140.0	0.0	1.9e-40	139.2	0.0	1.3	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
Copper-bind	PF00127.20	gi|410669225|ref|YP_006921596.1|	-	1.8e-10	41.1	0.8	2.1e-09	37.7	0.8	2.3	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|410669225|ref|YP_006921596.1|	-	5.9e-10	39.2	0.1	1.9e-09	37.6	0.1	1.8	2	0	0	2	2	2	1	Cupredoxin-like	domain
KH_4	PF13083.6	gi|410669225|ref|YP_006921596.1|	-	0.092	12.6	0.4	0.23	11.4	0.0	1.9	2	0	0	2	2	2	0	KH	domain
OrfB_IS605	PF01385.19	gi|410669227|ref|YP_006921598.1|	-	6.1e-26	91.0	0.2	1.1e-25	90.2	0.2	1.3	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|410669227|ref|YP_006921598.1|	-	1.4e-19	69.7	0.1	2.9e-19	68.7	0.1	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.8	gi|410669227|ref|YP_006921598.1|	-	1.7e-11	43.4	0.1	4e-11	42.2	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
zf-piccolo	PF05715.13	gi|410669227|ref|YP_006921598.1|	-	0.0031	17.6	0.4	0.0083	16.3	0.4	1.7	1	0	0	1	1	1	1	Piccolo	Zn-finger
HypA	PF01155.19	gi|410669227|ref|YP_006921598.1|	-	0.061	13.4	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|410669227|ref|YP_006921598.1|	-	0.1	12.6	0.2	0.19	11.8	0.2	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
C1_2	PF03107.16	gi|410669227|ref|YP_006921598.1|	-	0.14	12.5	0.2	0.37	11.1	0.2	1.7	1	0	0	1	1	1	0	C1	domain
Prok-RING_1	PF14446.6	gi|410669227|ref|YP_006921598.1|	-	0.17	11.9	0.4	0.34	10.9	0.4	1.5	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
Rubredoxin_2	PF18073.1	gi|410669227|ref|YP_006921598.1|	-	0.31	10.8	2.9	1.9	8.3	2.9	2.2	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
FUR	PF01475.19	gi|410669228|ref|YP_006921599.1|	-	1.5e-17	63.9	0.2	1.7e-17	63.7	0.2	1.1	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
PadR	PF03551.14	gi|410669228|ref|YP_006921599.1|	-	0.019	14.9	0.0	0.056	13.4	0.0	1.7	2	0	0	2	2	2	0	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.19	gi|410669228|ref|YP_006921599.1|	-	0.025	14.4	0.0	0.043	13.7	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Ribosomal_L19e	PF01280.20	gi|410669228|ref|YP_006921599.1|	-	0.16	12.0	0.0	0.22	11.6	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L19e
SR1P	PF13790.6	gi|410669228|ref|YP_006921599.1|	-	0.34	11.1	4.6	1.3	9.2	0.4	2.3	2	0	0	2	2	2	0	SR1	protein
AhpC-TSA	PF00578.21	gi|410669229|ref|YP_006921600.1|	-	4.8e-33	113.7	0.0	6.9e-33	113.2	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
1-cysPrx_C	PF10417.9	gi|410669229|ref|YP_006921600.1|	-	7.5e-14	51.3	0.6	1.4e-13	50.5	0.6	1.5	1	0	0	1	1	1	1	C-terminal	domain	of	1-Cys	peroxiredoxin
Redoxin	PF08534.10	gi|410669229|ref|YP_006921600.1|	-	6.3e-12	45.4	0.0	8.8e-12	45.0	0.0	1.2	1	0	0	1	1	1	1	Redoxin
P_C10	PF14974.6	gi|410669229|ref|YP_006921600.1|	-	0.061	13.4	0.2	0.14	12.3	0.1	1.6	1	1	0	1	1	1	0	Protein	C10
Ferritin	PF00210.24	gi|410669230|ref|YP_006921601.1|	-	1.3e-09	38.1	0.6	1.6e-09	37.8	0.6	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
GIIM	PF08388.11	gi|410669230|ref|YP_006921601.1|	-	0.0086	16.1	0.0	0.0098	15.9	0.0	1.1	1	0	0	1	1	1	1	Group	II	intron,	maturase-specific	domain
Clp_N	PF02861.20	gi|410669230|ref|YP_006921601.1|	-	0.054	13.6	0.4	0.1	12.8	0.1	1.6	2	0	0	2	2	2	0	Clp	amino	terminal	domain,	pathogenicity	island	component
Tli4_N	PF18443.1	gi|410669230|ref|YP_006921601.1|	-	0.14	12.5	0.0	0.17	12.3	0.0	1.1	1	0	0	1	1	1	0	Tle	cognate	immunity	protein	4	N-terminal	domain
peroxidase	PF00141.23	gi|410669231|ref|YP_006921602.1|	-	9.7e-88	293.7	0.0	7e-46	156.8	0.0	2.2	2	0	0	2	2	2	2	Peroxidase
Hemerythrin	PF01814.23	gi|410669232|ref|YP_006921603.1|	-	9e-18	65.2	1.5	9e-18	65.2	1.5	2.0	2	0	0	2	2	2	1	Hemerythrin	HHE	cation	binding	domain
Usp	PF00582.26	gi|410669233|ref|YP_006921604.1|	-	7.1e-32	110.8	0.0	8.5e-32	110.6	0.0	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF1538	PF07556.11	gi|410669234|ref|YP_006921605.1|	-	4.1e-24	85.1	4.3	5.3e-24	84.7	4.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1538)
Usp	PF00582.26	gi|410669234|ref|YP_006921605.1|	-	6.7e-20	72.0	0.1	9.1e-20	71.6	0.1	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF2105	PF09878.9	gi|410669234|ref|YP_006921605.1|	-	0.018	14.8	3.4	0.031	14.0	3.4	1.3	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2105)
DUF21	PF01595.20	gi|410669234|ref|YP_006921605.1|	-	0.021	14.5	1.1	0.028	14.1	1.1	1.1	1	0	0	1	1	1	0	Cyclin	M	transmembrane	N-terminal	domain
Colicin_V	PF02674.16	gi|410669234|ref|YP_006921605.1|	-	0.021	14.8	5.6	0.032	14.2	5.6	1.2	1	0	0	1	1	1	0	Colicin	V	production	protein
Phage_holin_3_6	PF07332.11	gi|410669234|ref|YP_006921605.1|	-	1.1	9.3	7.5	1.8	8.6	5.3	2.1	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF1538	PF07556.11	gi|410669235|ref|YP_006921606.1|	-	1.7e-69	233.4	28.7	2e-69	233.1	28.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1538)
DUF1538	PF07556.11	gi|410669236|ref|YP_006921607.1|	-	1.3e-69	233.8	23.0	1.5e-69	233.6	23.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1538)
P-II	PF00543.22	gi|410669237|ref|YP_006921608.1|	-	0.00067	20.2	0.4	0.00094	19.8	0.4	1.2	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
Usp	PF00582.26	gi|410669238|ref|YP_006921609.1|	-	4.3e-33	114.8	0.2	5.2e-33	114.5	0.2	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
GARS_N	PF02844.15	gi|410669238|ref|YP_006921609.1|	-	0.081	13.7	0.1	0.14	12.9	0.1	1.5	1	1	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	N	domain
DUF3382	PF11862.8	gi|410669240|ref|YP_006921611.1|	-	0.012	15.9	0.8	0.012	15.9	0.8	2.4	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF3382)
TraL	PF07178.11	gi|410669240|ref|YP_006921611.1|	-	0.078	13.5	1.0	0.078	13.5	1.0	4.1	5	0	0	5	5	5	0	TraL	protein
PAS_9	PF13426.7	gi|410669241|ref|YP_006921612.1|	-	1.6e-33	115.0	4.6	4.7e-11	42.9	0.0	6.4	6	1	0	6	6	6	3	PAS	domain
HATPase_c	PF02518.26	gi|410669241|ref|YP_006921612.1|	-	2.8e-32	111.6	0.2	1.7e-31	109.0	0.3	2.2	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|410669241|ref|YP_006921612.1|	-	5.8e-32	110.2	0.0	5.7e-12	45.9	0.0	5.7	5	1	0	5	5	5	5	PAS	fold
PAS_3	PF08447.12	gi|410669241|ref|YP_006921612.1|	-	1.4e-27	95.8	0.0	9.9e-20	70.6	0.0	5.3	5	1	0	5	5	5	3	PAS	fold
PAS	PF00989.25	gi|410669241|ref|YP_006921612.1|	-	2.1e-27	95.3	0.0	1.7e-07	31.3	0.0	5.9	6	0	0	6	6	6	4	PAS	fold
Response_reg	PF00072.24	gi|410669241|ref|YP_006921612.1|	-	1.6e-24	86.3	0.8	4.3e-24	84.8	0.8	1.8	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_8	PF13188.7	gi|410669241|ref|YP_006921612.1|	-	2.7e-23	81.5	0.0	1.2e-08	34.7	0.0	5.2	5	0	0	5	5	5	4	PAS	domain
HisKA	PF00512.25	gi|410669241|ref|YP_006921612.1|	-	1.7e-18	66.4	1.4	1.7e-17	63.2	0.1	2.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_10	PF13596.6	gi|410669241|ref|YP_006921612.1|	-	1.4e-10	41.7	0.0	0.0014	19.2	0.0	4.4	4	0	0	4	4	4	3	PAS	domain
GAF_2	PF13185.6	gi|410669241|ref|YP_006921612.1|	-	0.00031	21.1	0.0	0.0031	17.8	0.0	2.3	2	0	0	2	2	2	1	GAF	domain
GAF	PF01590.26	gi|410669241|ref|YP_006921612.1|	-	0.0034	18.0	0.0	0.19	12.3	0.0	2.7	2	0	0	2	2	2	1	GAF	domain
HATPase_c_3	PF13589.6	gi|410669241|ref|YP_006921612.1|	-	0.0099	15.7	0.1	0.023	14.5	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_2	PF08446.11	gi|410669241|ref|YP_006921612.1|	-	0.072	13.8	0.0	18	6.0	0.0	3.8	3	0	0	3	3	3	0	PAS	fold
ZNRF_3_ecto	PF18212.1	gi|410669241|ref|YP_006921612.1|	-	0.15	12.1	0.6	69	3.5	0.1	3.5	3	0	0	3	3	3	0	ZNRF-3	Ectodomain
Lectin_like	PF18560.1	gi|410669242|ref|YP_006921613.1|	-	1.6e-51	174.6	0.8	1.6e-51	174.6	0.8	2.8	3	0	0	3	3	3	1	Lectin	like	domain
NosD	PF05048.13	gi|410669242|ref|YP_006921613.1|	-	2.5e-26	92.4	88.8	2e-14	53.4	22.2	5.6	3	1	2	6	6	6	4	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.6	gi|410669242|ref|YP_006921613.1|	-	1.6e-25	89.8	82.3	9e-19	67.9	39.3	5.0	1	1	3	5	5	5	5	Right	handed	beta	helix	region
Peptidase_C1	PF00112.23	gi|410669242|ref|YP_006921613.1|	-	5.6e-10	39.7	0.3	1.3e-09	38.5	0.3	1.5	1	0	0	1	1	1	1	Papain	family	cysteine	protease
DUF772	PF05598.11	gi|410669243|ref|YP_006921614.1|	-	5.8e-22	77.5	0.1	1.6e-21	76.0	0.0	1.7	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|410669243|ref|YP_006921614.1|	-	1e-14	54.7	0.1	2e-14	53.8	0.1	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_4	PF13359.6	gi|410669243|ref|YP_006921614.1|	-	0.00018	21.2	0.1	0.00033	20.4	0.1	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1_3	PF13612.6	gi|410669243|ref|YP_006921614.1|	-	0.00035	20.6	0.1	0.00078	19.5	0.1	1.6	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|410669243|ref|YP_006921614.1|	-	0.03	14.5	0.2	0.056	13.7	0.2	1.4	1	0	0	1	1	1	0	Transposase	DDE	domain
HTH_33	PF13592.6	gi|410669244|ref|YP_006921615.1|	-	9.4e-09	34.8	0.0	1.3e-08	34.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_32	PF13565.6	gi|410669244|ref|YP_006921615.1|	-	3.9e-08	33.8	0.0	6.3e-08	33.1	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_ABP1_N	PF18107.1	gi|410669244|ref|YP_006921615.1|	-	0.001	18.8	0.1	0.0015	18.2	0.1	1.2	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
HTH_21	PF13276.6	gi|410669244|ref|YP_006921615.1|	-	0.044	13.9	0.0	0.062	13.5	0.0	1.2	1	0	0	1	1	1	0	HTH-like	domain
DDE_3	PF13358.6	gi|410669245|ref|YP_006921616.1|	-	6.9e-23	81.0	0.1	1e-22	80.4	0.1	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_1	PF03184.19	gi|410669245|ref|YP_006921616.1|	-	1.7e-07	31.1	0.1	2.1e-07	30.8	0.1	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|410669245|ref|YP_006921616.1|	-	1.1e-05	25.6	0.0	1.8e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	Integrase	core	domain
Ribosomal_S2	PF00318.20	gi|410669245|ref|YP_006921616.1|	-	0.0074	15.5	1.6	1	8.5	0.1	2.1	2	0	0	2	2	2	2	Ribosomal	protein	S2
DDE_Tnp_ISAZ013	PF07592.11	gi|410669245|ref|YP_006921616.1|	-	0.031	13.2	0.1	0.042	12.8	0.1	1.2	1	0	0	1	1	1	0	Rhodopirellula	transposase	DDE	domain
Flavodoxin_2	PF02525.17	gi|410669246|ref|YP_006921617.1|	-	1.7e-35	122.6	0.0	1.9e-35	122.4	0.0	1.0	1	0	0	1	1	1	1	Flavodoxin-like	fold
FMN_red	PF03358.15	gi|410669246|ref|YP_006921617.1|	-	1.5e-12	47.5	0.0	2.5e-12	46.8	0.0	1.4	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Dabb	PF07876.12	gi|410669247|ref|YP_006921618.1|	-	1.8e-26	92.6	0.5	2e-26	92.4	0.5	1.0	1	0	0	1	1	1	1	Stress	responsive	A/B	Barrel	Domain
PhoU	PF01895.19	gi|410669249|ref|YP_006921620.1|	-	3.2e-14	53.1	7.7	1.8e-10	41.2	0.8	3.2	3	0	0	3	3	3	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|410669249|ref|YP_006921620.1|	-	0.00058	19.7	0.0	0.0012	18.7	0.0	1.6	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PBP_like_2	PF12849.7	gi|410669250|ref|YP_006921621.1|	-	8e-12	45.4	2.1	1.1e-11	44.9	2.1	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
PBP_like	PF12727.7	gi|410669250|ref|YP_006921621.1|	-	0.0011	18.1	0.0	0.0021	17.2	0.0	1.4	1	0	0	1	1	1	1	PBP	superfamily	domain
Pilin_N	PF07790.11	gi|410669250|ref|YP_006921621.1|	-	0.22	12.5	6.2	0.59	11.1	6.2	1.9	1	1	0	1	1	1	0	Archaeal	Type	IV	pilin,	N-terminal
GCD14_N	PF14801.6	gi|410669251|ref|YP_006921622.1|	-	0.016	15.0	0.0	0.023	14.5	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit	N-term
MgtE	PF01769.16	gi|410669252|ref|YP_006921623.1|	-	4e-20	72.4	12.1	4e-20	72.4	12.1	1.8	1	1	1	2	2	2	1	Divalent	cation	transporter
DUF1129	PF06570.11	gi|410669252|ref|YP_006921623.1|	-	3.4	7.1	7.8	6	6.3	7.8	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
MgtE	PF01769.16	gi|410669253|ref|YP_006921624.1|	-	3.4e-17	63.0	8.7	3.4e-17	63.0	8.7	1.6	2	0	0	2	2	2	1	Divalent	cation	transporter
TrkA_C	PF02080.21	gi|410669254|ref|YP_006921625.1|	-	2.4e-25	88.1	0.0	9.9e-13	47.7	0.0	2.6	2	1	0	2	2	2	2	TrkA-C	domain
PhoU	PF01895.19	gi|410669254|ref|YP_006921625.1|	-	7.5e-20	71.2	11.9	9e-10	38.9	5.9	2.6	2	0	0	2	2	2	2	PhoU	domain
PhoU_div	PF01865.16	gi|410669254|ref|YP_006921625.1|	-	0.0099	15.2	6.0	0.23	10.8	0.2	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	DUF47
CdvA	PF18822.1	gi|410669254|ref|YP_006921625.1|	-	0.051	13.4	1.8	7.5	6.4	0.0	2.7	2	1	1	3	3	3	0	CdvA-like	coiled-coil	domain
Rib_5-P_isom_A	PF06026.14	gi|410669255|ref|YP_006921626.1|	-	2.1e-63	213.0	0.5	2.6e-63	212.7	0.5	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
DeoRC	PF00455.22	gi|410669255|ref|YP_006921626.1|	-	7e-07	29.3	2.9	0.00019	21.4	0.2	2.3	1	1	1	2	2	2	2	DeoR	C	terminal	sensor	domain
Sugar-bind	PF04198.13	gi|410669255|ref|YP_006921626.1|	-	0.00093	18.4	0.8	0.0025	17.0	0.2	1.8	1	1	1	2	2	2	1	Putative	sugar-binding	domain
tRNA-synt_2	PF00152.20	gi|410669256|ref|YP_006921627.1|	-	1.9e-94	316.3	0.1	2.3e-94	316.0	0.1	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.25	gi|410669256|ref|YP_006921627.1|	-	2.1e-14	53.2	0.1	3.8e-14	52.4	0.1	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.20	gi|410669256|ref|YP_006921627.1|	-	0.00053	19.5	1.0	0.02	14.4	0.1	2.5	3	0	0	3	3	3	1	tRNA	synthetases	class	II	core	domain	(F)
Med30	PF11315.8	gi|410669256|ref|YP_006921627.1|	-	0.092	13.0	0.0	0.22	11.7	0.0	1.6	2	0	0	2	2	2	0	Mediator	complex	subunit	30
Asparaginase	PF00710.20	gi|410669257|ref|YP_006921628.1|	-	1.3e-59	201.0	1.3	2.4e-59	200.1	0.9	1.6	2	0	0	2	2	2	1	Asparaginase,	N-terminal
Asparaginase_C	PF17763.1	gi|410669257|ref|YP_006921628.1|	-	4.8e-32	110.6	0.1	2.6e-30	105.0	0.0	2.5	2	1	0	2	2	2	1	Glutaminase/Asparaginase	C-terminal	domain
GatD_N	PF18195.1	gi|410669257|ref|YP_006921628.1|	-	7.7e-18	63.6	0.6	1.8e-17	62.4	0.6	1.7	1	0	0	1	1	1	1	GatD	N-terminal	domain
Lyase_1	PF00206.20	gi|410669258|ref|YP_006921629.1|	-	6.9e-65	219.5	0.1	1.2e-64	218.7	0.0	1.4	2	0	0	2	2	2	1	Lyase
ASL_C2	PF14698.6	gi|410669258|ref|YP_006921629.1|	-	3.6e-14	53.2	0.6	9.7e-14	51.9	0.0	2.1	2	0	0	2	2	2	1	Argininosuccinate	lyase	C-terminal
DnaJ	PF00226.31	gi|410669259|ref|YP_006921630.1|	-	2.7e-06	27.4	0.2	6e-06	26.3	0.2	1.6	1	0	0	1	1	1	1	DnaJ	domain
PfUIS3	PF11567.8	gi|410669259|ref|YP_006921630.1|	-	0.00083	19.7	1.6	0.0015	18.9	1.5	1.5	1	1	0	1	1	1	1	Plasmodium	falciparum	UIS3	membrane	protein
Glyco_trans_4_5	PF16994.5	gi|410669259|ref|YP_006921630.1|	-	0.027	14.1	0.1	0.034	13.8	0.1	1.3	1	0	0	1	1	1	0	Glycosyl-transferase	family	4
CheW	PF01584.19	gi|410669260|ref|YP_006921631.1|	-	7e-39	132.6	1.9	7.9e-39	132.4	1.9	1.0	1	0	0	1	1	1	1	CheW-like	domain
MHC_II_alpha	PF00993.20	gi|410669260|ref|YP_006921631.1|	-	0.15	11.8	0.0	0.22	11.2	0.0	1.3	1	0	0	1	1	1	0	Class	II	histocompatibility	antigen,	alpha	domain
AAL_decarboxy	PF03306.13	gi|410669261|ref|YP_006921632.1|	-	1.2e-84	283.0	0.0	1.4e-84	282.8	0.0	1.1	1	0	0	1	1	1	1	Alpha-acetolactate	decarboxylase
KaiA	PF07688.12	gi|410669263|ref|YP_006921634.1|	-	0.047	13.8	0.3	0.048	13.8	0.3	1.0	1	0	0	1	1	1	0	KaiA	C-terminal	domain
HATPase_c	PF02518.26	gi|410669264|ref|YP_006921635.1|	-	4.3e-30	104.5	1.5	1.6e-29	102.7	0.1	2.5	3	0	0	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|410669264|ref|YP_006921635.1|	-	3.2e-21	75.5	0.6	5.5e-11	42.6	0.1	2.6	2	0	0	2	2	2	2	PAS	domain
HisKA	PF00512.25	gi|410669264|ref|YP_006921635.1|	-	2.2e-17	62.9	0.1	1.3e-16	60.4	0.0	2.2	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS	PF00989.25	gi|410669264|ref|YP_006921635.1|	-	1.9e-14	53.6	0.0	4.5e-06	26.6	0.0	2.7	2	0	0	2	2	2	2	PAS	fold
PAS_8	PF13188.7	gi|410669264|ref|YP_006921635.1|	-	4.4e-11	42.5	0.1	1.2e-05	25.2	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
PAS_4	PF08448.10	gi|410669264|ref|YP_006921635.1|	-	2.8e-08	34.0	0.0	0.00043	20.5	0.0	2.9	2	1	0	2	2	2	2	PAS	fold
GAF	PF01590.26	gi|410669264|ref|YP_006921635.1|	-	2.6e-06	28.1	0.0	4.7e-06	27.3	0.0	1.5	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.6	gi|410669264|ref|YP_006921635.1|	-	3.3e-05	24.2	0.0	6.8e-05	23.2	0.0	1.6	1	0	0	1	1	1	1	GAF	domain
PAS_3	PF08447.12	gi|410669264|ref|YP_006921635.1|	-	0.00054	20.2	0.0	1.5	9.2	0.0	2.6	2	0	0	2	2	2	2	PAS	fold
HATPase_c_5	PF14501.6	gi|410669264|ref|YP_006921635.1|	-	0.00089	19.1	0.0	0.013	15.4	0.0	2.7	2	0	0	2	2	2	1	GHKL	domain
PAS_7	PF12860.7	gi|410669264|ref|YP_006921635.1|	-	0.0018	18.4	0.1	0.023	14.9	0.0	2.6	2	1	0	2	2	2	1	PAS	fold
HATPase_c_3	PF13589.6	gi|410669264|ref|YP_006921635.1|	-	0.0069	16.2	0.1	0.015	15.1	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_3	PF13492.6	gi|410669264|ref|YP_006921635.1|	-	0.023	15.0	0.0	0.04	14.3	0.0	1.4	1	0	0	1	1	1	0	GAF	domain
DUF92	PF01940.16	gi|410669266|ref|YP_006921637.1|	-	1e-55	188.8	16.9	1e-55	188.8	16.9	2.8	2	2	0	2	2	2	1	Integral	membrane	protein	DUF92
AveC_like	PF17198.4	gi|410669266|ref|YP_006921637.1|	-	0.028	13.9	2.2	0.077	12.4	2.0	1.9	1	1	0	1	1	1	0	Spirocyclase	AveC-like
DUF1616	PF07760.11	gi|410669266|ref|YP_006921637.1|	-	0.045	13.1	5.1	0.083	12.3	4.8	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1616)
Cupin_2	PF07883.11	gi|410669267|ref|YP_006921638.1|	-	1.7e-16	59.7	0.0	3.8e-16	58.5	0.0	1.6	2	0	0	2	2	2	1	Cupin	domain
HTH_19	PF12844.7	gi|410669267|ref|YP_006921638.1|	-	3.9e-10	39.6	0.0	6.7e-10	38.8	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|410669267|ref|YP_006921638.1|	-	7.2e-08	32.7	0.0	1.1e-07	32.1	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|410669267|ref|YP_006921638.1|	-	1.5e-07	31.4	0.0	2.3e-07	30.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix
EutQ	PF06249.12	gi|410669267|ref|YP_006921638.1|	-	0.0025	17.6	0.0	0.0043	16.8	0.0	1.3	1	0	0	1	1	1	1	Ethanolamine	utilisation	protein	EutQ
MannoseP_isomer	PF01050.18	gi|410669267|ref|YP_006921638.1|	-	0.003	17.5	0.0	0.0045	16.9	0.0	1.3	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
AraC_binding	PF02311.19	gi|410669267|ref|YP_006921638.1|	-	0.012	15.6	0.0	0.017	15.0	0.0	1.3	1	0	0	1	1	1	0	AraC-like	ligand	binding	domain
Cupin_3	PF05899.12	gi|410669267|ref|YP_006921638.1|	-	0.061	13.0	0.0	0.11	12.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
Phage_CI_repr	PF07022.13	gi|410669267|ref|YP_006921638.1|	-	0.12	12.5	0.0	0.27	11.3	0.0	1.7	1	1	0	1	1	1	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
AMP-binding	PF00501.28	gi|410669268|ref|YP_006921639.1|	-	3.5e-76	256.5	0.0	4.3e-76	256.2	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|410669268|ref|YP_006921639.1|	-	6.2e-24	84.8	2.6	7.7e-24	84.5	1.0	2.0	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
Fer4_7	PF12838.7	gi|410669269|ref|YP_006921640.1|	-	6.8e-10	39.4	10.6	8.9e-10	39.0	10.6	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410669269|ref|YP_006921640.1|	-	4.1e-08	33.2	5.0	5.5e-08	32.8	5.0	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410669269|ref|YP_006921640.1|	-	1.3e-07	31.6	8.5	2.2e-07	31.0	8.6	1.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|410669269|ref|YP_006921640.1|	-	2.8e-06	26.9	15.2	0.00013	21.6	3.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|410669269|ref|YP_006921640.1|	-	6.5e-06	26.5	5.6	0.015	15.8	0.8	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410669269|ref|YP_006921640.1|	-	9.2e-06	25.7	23.2	4.6e-05	23.4	12.0	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410669269|ref|YP_006921640.1|	-	2.3e-05	25.2	12.8	0.00098	20.0	1.7	2.1	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|410669269|ref|YP_006921640.1|	-	2.4e-05	24.2	13.3	0.0088	16.1	3.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|410669269|ref|YP_006921640.1|	-	5.6e-05	23.9	6.2	0.075	13.9	0.7	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410669269|ref|YP_006921640.1|	-	5.9e-05	23.5	10.6	0.042	14.4	1.5	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410669269|ref|YP_006921640.1|	-	0.0002	21.3	17.9	0.017	15.2	5.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|410669269|ref|YP_006921640.1|	-	0.00054	20.4	7.6	0.051	14.1	1.8	2.2	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_4	PF12800.7	gi|410669269|ref|YP_006921640.1|	-	0.0012	19.2	15.9	0.075	13.6	3.9	2.2	1	1	1	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|410669269|ref|YP_006921640.1|	-	0.015	16.2	17.9	0.31	12.1	5.9	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|410669269|ref|YP_006921640.1|	-	0.026	14.7	6.6	0.45	10.7	1.4	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|410669269|ref|YP_006921640.1|	-	0.054	14.2	8.8	1.2	9.9	0.7	2.1	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
POR_N	PF01855.19	gi|410669270|ref|YP_006921641.1|	-	8e-54	182.8	0.0	1.1e-53	182.4	0.0	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
PFOR_II	PF17147.4	gi|410669270|ref|YP_006921641.1|	-	4.7e-25	87.9	0.0	1.1e-24	86.6	0.0	1.7	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|410669270|ref|YP_006921641.1|	-	4.7e-06	26.5	0.0	8.9e-06	25.6	0.0	1.4	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.18	gi|410669270|ref|YP_006921641.1|	-	0.00063	19.4	0.1	0.00096	18.8	0.1	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Transket_pyr	PF02779.24	gi|410669270|ref|YP_006921641.1|	-	0.064	12.9	0.0	0.11	12.2	0.0	1.4	1	0	0	1	1	1	0	Transketolase,	pyrimidine	binding	domain
POR	PF01558.18	gi|410669271|ref|YP_006921642.1|	-	2.7e-36	125.3	0.1	4.4e-36	124.6	0.1	1.3	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_C	PF02775.21	gi|410669271|ref|YP_006921642.1|	-	2.8e-23	82.4	0.1	5.4e-23	81.5	0.1	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
E1_dh	PF00676.20	gi|410669271|ref|YP_006921642.1|	-	0.088	11.7	0.8	0.16	10.9	0.8	1.3	1	0	0	1	1	1	0	Dehydrogenase	E1	component
TGBp3	PF02495.17	gi|410669271|ref|YP_006921642.1|	-	0.18	11.5	0.3	0.41	10.3	0.3	1.6	1	0	0	1	1	1	0	Triple	gene	block	3
Thioredoxin	PF00085.20	gi|410669272|ref|YP_006921643.1|	-	1.5e-18	66.7	0.0	1.7e-18	66.5	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|410669272|ref|YP_006921643.1|	-	5.5e-07	30.0	0.3	5.5e-06	26.8	0.3	2.0	1	1	0	1	1	1	1	Thioredoxin-like	domain
AhpC-TSA	PF00578.21	gi|410669272|ref|YP_006921643.1|	-	0.0005	20.0	0.1	0.00073	19.5	0.1	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
OST3_OST6	PF04756.13	gi|410669272|ref|YP_006921643.1|	-	0.00098	18.5	0.0	0.0012	18.3	0.0	1.1	1	0	0	1	1	1	1	OST3	/	OST6	family,	transporter	family
Thioredoxin_7	PF13899.6	gi|410669272|ref|YP_006921643.1|	-	0.0016	18.6	0.0	0.0023	18.0	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_3	PF13192.6	gi|410669272|ref|YP_006921643.1|	-	0.012	15.7	0.0	0.019	15.0	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin	domain
TraF	PF13728.6	gi|410669272|ref|YP_006921643.1|	-	0.03	14.1	0.0	0.037	13.9	0.0	1.1	1	0	0	1	1	1	0	F	plasmid	transfer	operon	protein
Thioredoxin_6	PF13848.6	gi|410669272|ref|YP_006921643.1|	-	0.056	13.3	0.0	0.072	13.0	0.0	1.1	1	0	0	1	1	1	0	Thioredoxin-like	domain
Redoxin	PF08534.10	gi|410669272|ref|YP_006921643.1|	-	0.079	12.7	0.0	0.091	12.5	0.0	1.2	1	0	0	1	1	1	0	Redoxin
LemA	PF04011.12	gi|410669273|ref|YP_006921644.1|	-	1.2e-60	203.7	2.1	1.6e-60	203.3	2.1	1.1	1	0	0	1	1	1	1	LemA	family
Lectin_N	PF03954.14	gi|410669273|ref|YP_006921644.1|	-	0.0099	15.6	0.6	0.015	15.0	0.1	1.5	2	0	0	2	2	2	1	Hepatic	lectin,	N-terminal	domain
PHTB1_C	PF14728.6	gi|410669273|ref|YP_006921644.1|	-	0.018	14.2	0.1	0.022	13.9	0.1	1.1	1	0	0	1	1	1	0	PTHB1	C-terminus
DUF948	PF06103.11	gi|410669273|ref|YP_006921644.1|	-	0.028	14.7	2.7	0.29	11.4	0.7	2.2	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
Chordopox_A13L	PF05961.11	gi|410669273|ref|YP_006921644.1|	-	0.12	12.6	0.5	0.26	11.6	0.5	1.6	1	0	0	1	1	1	0	Chordopoxvirus	A13L	protein
QIL1	PF15884.5	gi|410669273|ref|YP_006921644.1|	-	0.13	12.9	0.0	0.46	11.1	0.0	1.9	2	0	0	2	2	2	0	MICOS	complex	subunit	MIC13,	QIL1
DUF2207	PF09972.9	gi|410669274|ref|YP_006921645.1|	-	1.7e-109	366.8	3.4	2e-109	366.6	3.4	1.1	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2207)
EFF-AFF	PF14884.6	gi|410669274|ref|YP_006921645.1|	-	0.045	11.9	0.0	0.068	11.3	0.0	1.2	1	0	0	1	1	1	0	Type	I	membrane	glycoproteins	cell-cell	fusogen
DUF973	PF06157.11	gi|410669274|ref|YP_006921645.1|	-	0.087	11.9	2.8	0.17	10.9	2.8	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF973)
TRAP-gamma	PF07074.12	gi|410669274|ref|YP_006921645.1|	-	0.2	11.2	0.1	0.2	11.2	0.1	2.6	3	0	0	3	3	3	0	Translocon-associated	protein,	gamma	subunit	(TRAP-gamma)
AIM24	PF01987.17	gi|410669275|ref|YP_006921646.1|	-	5.8e-33	114.4	0.2	7.2e-33	114.1	0.2	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
NUDIX	PF00293.28	gi|410669276|ref|YP_006921647.1|	-	2.7e-18	66.3	0.0	4.4e-18	65.6	0.0	1.3	1	0	0	1	1	1	1	NUDIX	domain
zf-NADH-PPase	PF09297.11	gi|410669276|ref|YP_006921647.1|	-	4.9e-08	32.5	1.7	8.2e-08	31.8	1.7	1.4	1	0	0	1	1	1	1	NADH	pyrophosphatase	zinc	ribbon	domain
NUDIX-like	PF09296.11	gi|410669276|ref|YP_006921647.1|	-	2e-05	25.2	0.0	3.3e-05	24.5	0.0	1.4	1	0	0	1	1	1	1	NADH	pyrophosphatase-like	rudimentary	NUDIX	domain
DUF35_N	PF12172.8	gi|410669276|ref|YP_006921647.1|	-	0.046	13.6	1.2	1.1	9.2	0.1	2.3	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DZR	PF12773.7	gi|410669276|ref|YP_006921647.1|	-	0.058	13.4	1.4	0.074	13.1	0.4	1.7	2	0	0	2	2	2	0	Double	zinc	ribbon
HypA	PF01155.19	gi|410669276|ref|YP_006921647.1|	-	0.13	12.2	0.0	0.26	11.3	0.0	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|410669276|ref|YP_006921647.1|	-	0.14	12.3	1.4	0.33	11.1	1.4	1.7	1	0	0	1	1	1	0	Zinc	ribbon	domain
PknG_rubred	PF16919.5	gi|410669276|ref|YP_006921647.1|	-	0.18	11.9	0.3	0.31	11.2	0.3	1.3	1	0	0	1	1	1	0	Protein	kinase	G	rubredoxin	domain
zinc_ribbon_2	PF13240.6	gi|410669276|ref|YP_006921647.1|	-	0.21	11.3	3.7	4.6	7.1	0.1	2.6	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ACC	PF17848.1	gi|410669276|ref|YP_006921647.1|	-	0.88	9.7	5.6	2.4	8.3	0.8	3.3	2	1	1	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
DUF2341	PF10102.9	gi|410669277|ref|YP_006921648.1|	-	2e-24	86.0	0.3	6.1e-24	84.4	0.3	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2341)
YbbR	PF07949.12	gi|410669277|ref|YP_006921648.1|	-	0.035	14.4	0.1	0.19	12.1	0.1	2.3	1	1	0	1	1	1	0	YbbR-like	protein
AMP-binding	PF00501.28	gi|410669278|ref|YP_006921649.1|	-	4.1e-107	358.4	0.0	5e-107	358.1	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|410669278|ref|YP_006921649.1|	-	3.3e-19	69.6	0.0	7.6e-19	68.5	0.0	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
DUF3784	PF12650.7	gi|410669278|ref|YP_006921649.1|	-	0.26	11.5	1.3	0.6	10.4	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3784)
4HBT_2	PF13279.6	gi|410669279|ref|YP_006921650.1|	-	1.7e-08	35.0	0.0	2.1e-08	34.7	0.0	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
Acyl-ACP_TE	PF01643.17	gi|410669279|ref|YP_006921650.1|	-	0.0015	17.8	0.0	0.34	10.1	0.0	2.5	1	1	1	2	2	2	2	Acyl-ACP	thioesterase
4HBT	PF03061.22	gi|410669279|ref|YP_006921650.1|	-	0.0022	18.3	0.0	0.0033	17.8	0.0	1.4	1	0	0	1	1	1	1	Thioesterase	superfamily
4HBT_3	PF13622.6	gi|410669279|ref|YP_006921650.1|	-	0.16	12.2	0.0	0.17	12.1	0.0	1.2	1	0	0	1	1	1	0	Thioesterase-like	superfamily
Cupin_2	PF07883.11	gi|410669280|ref|YP_006921651.1|	-	5.7e-12	45.2	0.1	9.1e-12	44.5	0.1	1.3	1	0	0	1	1	1	1	Cupin	domain
HTH_31	PF13560.6	gi|410669280|ref|YP_006921651.1|	-	1.4e-08	34.9	0.0	2e-08	34.4	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|410669280|ref|YP_006921651.1|	-	5.4e-08	32.8	0.1	7.4e-08	32.3	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix
HTH_26	PF13443.6	gi|410669280|ref|YP_006921651.1|	-	6.5e-07	29.7	0.0	9.2e-07	29.2	0.0	1.2	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_25	PF13413.6	gi|410669280|ref|YP_006921651.1|	-	0.0011	18.8	0.6	0.0026	17.6	0.6	1.6	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|410669280|ref|YP_006921651.1|	-	0.0016	18.4	0.0	0.0025	17.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|410669280|ref|YP_006921651.1|	-	0.0093	15.9	0.3	0.014	15.3	0.3	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
AraC_binding	PF02311.19	gi|410669280|ref|YP_006921651.1|	-	0.17	11.8	0.0	0.24	11.3	0.0	1.3	1	0	0	1	1	1	0	AraC-like	ligand	binding	domain
DUF1699	PF08004.11	gi|410669281|ref|YP_006921652.1|	-	3.1e-25	88.3	0.1	3.4e-25	88.2	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1699)
Hydantoinase_A	PF01968.18	gi|410669282|ref|YP_006921653.1|	-	3.7e-35	121.6	3.6	2.3e-34	119.0	0.7	2.9	2	1	0	2	2	2	1	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.13	gi|410669282|ref|YP_006921653.1|	-	2.8e-30	105.3	1.9	7.1e-26	91.0	0.1	3.8	3	1	0	3	3	3	2	Hydantoinase/oxoprolinase	N-terminal	region
MutL	PF13941.6	gi|410669282|ref|YP_006921653.1|	-	3.9e-06	25.7	1.0	0.027	13.1	0.1	2.3	2	0	0	2	2	2	2	MutL	protein
ROK	PF00480.20	gi|410669282|ref|YP_006921653.1|	-	0.042	13.3	0.0	0.09	12.2	0.0	1.5	1	0	0	1	1	1	0	ROK	family
BcrAD_BadFG	PF01869.20	gi|410669282|ref|YP_006921653.1|	-	0.13	11.7	0.2	2.8	7.4	0.1	2.4	2	0	0	2	2	2	0	BadF/BadG/BcrA/BcrD	ATPase	family
FtsA	PF14450.6	gi|410669282|ref|YP_006921653.1|	-	0.53	10.7	2.1	6.7	7.2	0.3	2.7	2	1	1	3	3	3	0	Cell	division	protein	FtsA
GAF_2	PF13185.6	gi|410669283|ref|YP_006921654.1|	-	3.8e-32	111.4	0.0	3.2e-24	85.8	0.0	3.4	3	0	0	3	3	3	3	GAF	domain
HATPase_c	PF02518.26	gi|410669283|ref|YP_006921654.1|	-	1.8e-26	92.9	0.1	3.5e-26	91.9	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF	PF01590.26	gi|410669283|ref|YP_006921654.1|	-	4.1e-20	72.8	0.0	5.7e-06	27.0	0.0	3.4	3	0	0	3	3	3	3	GAF	domain
HisKA	PF00512.25	gi|410669283|ref|YP_006921654.1|	-	3.7e-13	49.3	0.1	1.1e-12	47.7	0.1	1.9	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.7	gi|410669283|ref|YP_006921654.1|	-	1.1e-09	38.1	0.0	5.4e-05	23.1	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
GAF_3	PF13492.6	gi|410669283|ref|YP_006921654.1|	-	1.1e-08	35.4	0.0	0.0043	17.4	0.0	3.5	3	1	0	3	3	3	2	GAF	domain
PAS_9	PF13426.7	gi|410669283|ref|YP_006921654.1|	-	6.6e-06	26.3	0.4	0.0015	18.8	0.1	3.1	2	1	0	2	2	2	1	PAS	domain
PAS	PF00989.25	gi|410669283|ref|YP_006921654.1|	-	2.8e-05	24.1	0.0	0.00043	20.3	0.0	2.5	2	0	0	2	2	2	1	PAS	fold
SpoVT_C	PF15714.5	gi|410669283|ref|YP_006921654.1|	-	5.2e-05	23.3	0.8	0.16	12.0	0.1	4.0	4	0	0	4	4	4	1	Stage	V	sporulation	protein	T	C-terminal,	transcription	factor
PAS_4	PF08448.10	gi|410669283|ref|YP_006921654.1|	-	0.0032	17.7	0.1	0.016	15.4	0.0	2.3	4	0	0	4	4	3	1	PAS	fold
HATPase_c_5	PF14501.6	gi|410669283|ref|YP_006921654.1|	-	0.0053	16.6	0.7	0.019	14.9	0.0	2.3	3	0	0	3	3	2	1	GHKL	domain
HATPase_c_3	PF13589.6	gi|410669283|ref|YP_006921654.1|	-	0.043	13.6	0.1	0.12	12.2	0.1	1.7	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|410669283|ref|YP_006921654.1|	-	0.051	13.9	0.0	0.13	12.5	0.0	1.8	1	0	0	1	1	1	0	PAS	fold
SIR2	PF02146.17	gi|410669284|ref|YP_006921655.1|	-	1.1e-53	181.8	0.0	1.3e-53	181.5	0.0	1.1	1	0	0	1	1	1	1	Sir2	family
ArsA_HSP20	PF17886.1	gi|410669285|ref|YP_006921656.1|	-	0.00051	19.6	0.0	0.00077	19.0	0.0	1.4	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
HSP20	PF00011.21	gi|410669285|ref|YP_006921656.1|	-	0.0062	16.7	0.0	0.018	15.1	0.0	1.9	1	1	1	2	2	2	1	Hsp20/alpha	crystallin	family
Orn_Arg_deC_N	PF02784.16	gi|410669286|ref|YP_006921657.1|	-	1.8e-25	89.8	0.0	2.4e-25	89.3	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	pyridoxal	binding	domain
Orn_DAP_Arg_deC	PF00278.22	gi|410669286|ref|YP_006921657.1|	-	7e-21	74.3	0.0	7.3e-21	74.2	0.0	1.3	1	1	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	C-terminal	sheet	domain
Peptidase_S8	PF00082.22	gi|410669287|ref|YP_006921658.1|	-	1.8e-49	168.6	16.3	3.4e-49	167.7	16.3	1.5	1	0	0	1	1	1	1	Subtilase	family
Big_1	PF02369.16	gi|410669287|ref|YP_006921658.1|	-	7.5e-08	32.3	4.9	7.5e-08	32.3	4.9	3.3	3	1	0	4	4	4	1	Bacterial	Ig-like	domain	(group	1)
Tk-SP_N-pro	PF18237.1	gi|410669287|ref|YP_006921658.1|	-	4.9e-07	29.7	0.1	9.9e-07	28.7	0.1	1.5	1	0	0	1	1	1	1	Tk-SP	N-propeptide	domain
CarboxypepD_reg	PF13620.6	gi|410669287|ref|YP_006921658.1|	-	0.00064	19.9	4.0	0.00097	19.4	1.1	2.9	3	0	0	3	3	3	1	Carboxypeptidase	regulatory-like	domain
MG4	PF17789.1	gi|410669287|ref|YP_006921658.1|	-	0.0073	16.4	0.3	0.019	15.1	0.3	1.6	1	0	0	1	1	1	1	Macroglobulin	domain	MG4
bMG3	PF11974.8	gi|410669287|ref|YP_006921658.1|	-	0.029	14.4	0.1	0.087	12.9	0.1	1.8	1	0	0	1	1	1	0	Bacterial	alpha-2-macroglobulin	MG3	domain
Inhibitor_I9	PF05922.16	gi|410669287|ref|YP_006921658.1|	-	0.078	13.7	0.1	0.28	11.9	0.0	1.9	2	0	0	2	2	2	0	Peptidase	inhibitor	I9
CspB_prodomain	PF18425.1	gi|410669287|ref|YP_006921658.1|	-	0.14	12.2	0.0	0.31	11.1	0.0	1.5	1	0	0	1	1	1	0	Csp	protease	B	prodomain
SpaA	PF17802.1	gi|410669287|ref|YP_006921658.1|	-	0.16	12.3	5.3	0.1	12.9	1.4	2.6	3	1	0	3	3	3	0	Prealbumin-like	fold	domain
FlgD_ig	PF13860.6	gi|410669287|ref|YP_006921658.1|	-	3.5	7.6	6.9	22	5.0	3.3	3.0	2	1	0	2	2	2	0	FlgD	Ig-like	domain
Invasin_D3	PF09134.10	gi|410669287|ref|YP_006921658.1|	-	8.4	6.8	12.7	0.33	11.3	2.7	3.5	4	1	1	5	5	5	0	Invasin,	domain	3
UPF0047	PF01894.17	gi|410669288|ref|YP_006921659.1|	-	7.8e-39	132.4	0.1	9e-39	132.2	0.1	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
MarR_2	PF12802.7	gi|410669289|ref|YP_006921660.1|	-	0.00011	22.0	0.0	0.00011	22.0	0.0	1.1	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|410669289|ref|YP_006921660.1|	-	0.00054	19.5	0.0	0.00063	19.3	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
z-alpha	PF02295.17	gi|410669289|ref|YP_006921660.1|	-	0.00073	19.5	0.0	0.00084	19.3	0.0	1.1	1	0	0	1	1	1	1	Adenosine	deaminase	z-alpha	domain
TrmB	PF01978.19	gi|410669289|ref|YP_006921660.1|	-	0.00073	19.4	0.0	0.00081	19.2	0.0	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|410669289|ref|YP_006921660.1|	-	0.002	18.1	0.0	0.0023	17.9	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_5	PF01022.20	gi|410669289|ref|YP_006921660.1|	-	0.0026	17.6	0.0	0.0036	17.1	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|410669289|ref|YP_006921660.1|	-	0.012	15.5	0.0	0.013	15.4	0.0	1.1	1	0	0	1	1	1	0	MarR	family
Sigma70_r3	PF04539.16	gi|410669289|ref|YP_006921660.1|	-	0.022	14.9	0.1	0.57	10.3	0.0	2.0	1	1	1	2	2	2	0	Sigma-70	region	3
Phage_rep_O	PF04492.13	gi|410669289|ref|YP_006921660.1|	-	0.023	15.2	0.0	0.025	15.1	0.0	1.2	1	0	0	1	1	1	0	Bacteriophage	replication	protein	O
HTH_IclR	PF09339.10	gi|410669289|ref|YP_006921660.1|	-	0.026	14.3	0.0	0.03	14.1	0.0	1.1	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|410669289|ref|YP_006921660.1|	-	0.032	14.6	0.0	0.048	14.0	0.0	1.3	1	1	0	1	1	1	0	Transcriptional	regulator
DUF4423	PF14394.6	gi|410669289|ref|YP_006921660.1|	-	0.056	13.2	0.0	0.056	13.1	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
IF2_N	PF04760.15	gi|410669289|ref|YP_006921660.1|	-	0.1	12.4	0.1	0.39	10.6	0.0	1.8	1	1	1	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
HTH_11	PF08279.12	gi|410669289|ref|YP_006921660.1|	-	0.11	12.4	0.0	0.13	12.3	0.0	1.1	1	0	0	1	1	1	0	HTH	domain
TFIIE_alpha	PF02002.17	gi|410669289|ref|YP_006921660.1|	-	0.13	12.2	0.0	0.14	12.0	0.0	1.1	1	0	0	1	1	1	0	TFIIE	alpha	subunit
RepL	PF05732.11	gi|410669289|ref|YP_006921660.1|	-	0.16	11.4	0.0	0.2	11.1	0.0	1.1	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HIT	PF01230.23	gi|410669290|ref|YP_006921661.1|	-	1.6e-28	99.3	0.0	2.5e-28	98.7	0.0	1.3	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.8	gi|410669290|ref|YP_006921661.1|	-	1e-16	61.4	0.0	1.4e-16	61.0	0.0	1.2	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.15	gi|410669290|ref|YP_006921661.1|	-	0.00083	19.2	0.3	0.0013	18.6	0.3	1.4	1	1	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
GalP_UDP_tr_C	PF02744.17	gi|410669290|ref|YP_006921661.1|	-	0.049	13.4	0.0	0.076	12.7	0.0	1.3	1	0	0	1	1	1	0	Galactose-1-phosphate	uridyl	transferase,	C-terminal	domain
Arg_repressor_C	PF02863.18	gi|410669291|ref|YP_006921662.1|	-	0.017	15.0	0.8	0.047	13.6	0.8	1.8	1	0	0	1	1	1	0	Arginine	repressor,	C-terminal	domain
Myosin_N	PF02736.19	gi|410669291|ref|YP_006921662.1|	-	0.78	9.6	3.5	1.3	8.9	0.1	2.7	3	0	0	3	3	3	0	Myosin	N-terminal	SH3-like	domain
CTP_transf_1	PF01148.20	gi|410669292|ref|YP_006921663.1|	-	0.00056	19.8	14.3	0.0033	17.2	14.3	1.9	1	1	0	1	1	1	1	Cytidylyltransferase	family
AA_permease	PF00324.21	gi|410669294|ref|YP_006921665.1|	-	1.6e-49	168.8	61.5	7.2e-49	166.7	60.1	2.3	2	1	0	2	2	2	1	Amino	acid	permease
PhoU_div	PF01865.16	gi|410669294|ref|YP_006921665.1|	-	0.17	11.2	0.0	0.31	10.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF47
FMN_red	PF03358.15	gi|410669295|ref|YP_006921666.1|	-	8.5e-27	93.8	0.0	1e-26	93.6	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|410669295|ref|YP_006921666.1|	-	1.6e-13	50.8	0.0	1.9e-13	50.6	0.0	1.1	1	0	0	1	1	1	1	Flavodoxin-like	fold
Flavodoxin_5	PF12724.7	gi|410669295|ref|YP_006921666.1|	-	0.043	14.0	0.0	0.072	13.3	0.0	1.3	1	0	0	1	1	1	0	Flavodoxin	domain
HisKA_7TM	PF16927.5	gi|410669297|ref|YP_006921668.1|	-	3.6e-41	141.6	22.2	5.6e-41	141.0	22.2	1.3	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
Response_reg	PF00072.24	gi|410669297|ref|YP_006921668.1|	-	6.6e-40	135.8	0.6	4.7e-20	71.8	0.1	2.6	2	0	0	2	2	2	2	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|410669297|ref|YP_006921668.1|	-	1.2e-27	96.7	0.1	2.7e-27	95.5	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|410669297|ref|YP_006921668.1|	-	1.6e-19	69.7	0.1	4.6e-19	68.2	0.1	1.9	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
Hpt	PF01627.23	gi|410669297|ref|YP_006921668.1|	-	1.4e-07	31.7	5.0	1.8e-07	31.3	2.8	2.3	2	1	0	2	2	2	1	Hpt	domain
PAS_4	PF08448.10	gi|410669297|ref|YP_006921668.1|	-	1.7e-07	31.4	0.0	3.8e-07	30.4	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|410669297|ref|YP_006921668.1|	-	3.2e-06	27.3	0.0	1.5e-05	25.1	0.0	2.3	2	0	0	2	2	2	1	PAS	domain
PAS	PF00989.25	gi|410669297|ref|YP_006921668.1|	-	3.1e-05	23.9	0.1	0.00011	22.1	0.1	2.0	1	1	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|410669297|ref|YP_006921668.1|	-	5.9e-05	23.0	0.0	0.00016	21.6	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
PAS_10	PF13596.6	gi|410669297|ref|YP_006921668.1|	-	0.00046	20.7	0.1	0.0024	18.5	0.0	2.3	2	1	0	2	2	2	1	PAS	domain
HATPase_c_3	PF13589.6	gi|410669297|ref|YP_006921668.1|	-	0.032	14.0	0.0	0.067	13.0	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HTH_32	PF13565.6	gi|410669298|ref|YP_006921669.1|	-	1.1e-12	48.4	0.0	1.7e-12	47.8	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|410669298|ref|YP_006921669.1|	-	1e-08	35.1	0.0	2e-08	34.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_33	PF13592.6	gi|410669298|ref|YP_006921669.1|	-	2.2e-08	33.6	0.0	4.7e-08	32.6	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|410669298|ref|YP_006921669.1|	-	1.1e-06	28.2	0.1	4.9e-06	26.2	0.0	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|410669298|ref|YP_006921669.1|	-	0.00083	19.4	0.0	0.0019	18.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_ABP1_N	PF18107.1	gi|410669298|ref|YP_006921669.1|	-	0.0031	17.2	0.1	0.0053	16.4	0.1	1.3	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
DDE_3	PF13358.6	gi|410669299|ref|YP_006921670.1|	-	4.2e-23	81.7	0.1	4.7e-23	81.6	0.1	1.0	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_1	PF03184.19	gi|410669299|ref|YP_006921670.1|	-	3.7e-07	29.9	0.0	4.1e-07	29.8	0.0	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|410669299|ref|YP_006921670.1|	-	7.3e-06	26.2	0.0	9.2e-06	25.8	0.0	1.1	1	0	0	1	1	1	1	Integrase	core	domain
DDE_Tnp_ISAZ013	PF07592.11	gi|410669299|ref|YP_006921670.1|	-	0.089	11.8	0.0	0.12	11.4	0.0	1.2	1	0	0	1	1	1	0	Rhodopirellula	transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|410669300|ref|YP_006921671.1|	-	8.4e-10	38.6	1.2	1.7e-09	37.7	1.2	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|410669300|ref|YP_006921671.1|	-	0.042	13.9	0.1	0.092	12.8	0.1	1.5	1	0	0	1	1	1	0	Transposase	domain	(DUF772)
GST_N_3	PF13417.6	gi|410669300|ref|YP_006921671.1|	-	0.065	13.7	0.0	0.95	9.9	0.0	2.3	2	0	0	2	2	2	0	Glutathione	S-transferase,	N-terminal	domain
DUF3307	PF11750.8	gi|410669301|ref|YP_006921672.1|	-	6.8e-22	77.9	4.8	6.8e-22	77.9	4.8	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3307)
SatD	PF16264.5	gi|410669302|ref|YP_006921673.1|	-	2.3e-07	30.7	0.0	3.3e-07	30.1	0.0	1.1	1	0	0	1	1	1	1	SatD	family	(SatD)
Sigma70_r4	PF04545.16	gi|410669302|ref|YP_006921673.1|	-	0.00083	18.8	0.0	0.0015	18.0	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r4_2	PF08281.12	gi|410669302|ref|YP_006921673.1|	-	0.0017	18.0	0.1	0.0038	16.9	0.1	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_23	PF13384.6	gi|410669302|ref|YP_006921673.1|	-	0.006	16.3	0.0	0.012	15.4	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
KorB	PF08535.10	gi|410669302|ref|YP_006921673.1|	-	0.045	13.8	0.1	0.22	11.6	0.0	1.9	2	0	0	2	2	2	0	KorB	domain
HTH_5	PF01022.20	gi|410669302|ref|YP_006921673.1|	-	0.045	13.6	0.4	0.14	12.0	0.2	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_3	PF01381.22	gi|410669302|ref|YP_006921673.1|	-	0.079	13.0	0.2	0.15	12.1	0.2	1.4	1	0	0	1	1	1	0	Helix-turn-helix
Sigma70_ECF	PF07638.11	gi|410669302|ref|YP_006921673.1|	-	0.098	12.5	0.0	0.17	11.8	0.0	1.4	1	0	0	1	1	1	0	ECF	sigma	factor
TLC	PF03219.14	gi|410669302|ref|YP_006921673.1|	-	0.1	11.3	0.0	0.13	10.9	0.0	1.1	1	0	0	1	1	1	0	TLC	ATP/ADP	transporter
SfsA	PF03749.13	gi|410669303|ref|YP_006921674.1|	-	1.9e-42	144.4	0.0	2.5e-42	144.0	0.0	1.2	1	0	0	1	1	1	1	Sugar	fermentation	stimulation	protein	RE	domain
SfsA_N	PF17746.1	gi|410669303|ref|YP_006921674.1|	-	1.2e-21	76.6	0.0	2.3e-21	75.7	0.0	1.5	1	0	0	1	1	1	1	SfsA	N-terminal	OB	domain
RsgA_GTPase	PF03193.16	gi|410669305|ref|YP_006921676.1|	-	2.3e-47	161.0	0.5	4.5e-46	156.8	0.0	2.3	2	0	0	2	2	2	1	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|410669305|ref|YP_006921676.1|	-	1.1e-08	35.2	0.0	2.7e-08	33.9	0.0	1.7	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|410669305|ref|YP_006921676.1|	-	3.1e-07	30.0	0.1	0.0069	15.9	0.0	2.5	2	0	0	2	2	2	2	Ferrous	iron	transport	protein	B
ABC_tran	PF00005.27	gi|410669305|ref|YP_006921676.1|	-	6.4e-06	26.7	0.1	1e-05	26.0	0.1	1.6	1	1	0	1	1	1	1	ABC	transporter
PduV-EutP	PF10662.9	gi|410669305|ref|YP_006921676.1|	-	1.9e-05	24.5	0.2	0.059	13.1	0.1	2.9	2	1	1	3	3	3	2	Ethanolamine	utilisation	-	propanediol	utilisation
Septin	PF00735.18	gi|410669305|ref|YP_006921676.1|	-	6.6e-05	22.3	0.0	0.00011	21.6	0.0	1.3	1	0	0	1	1	1	1	Septin
AAA_16	PF13191.6	gi|410669305|ref|YP_006921676.1|	-	0.00041	20.8	0.0	0.0011	19.4	0.0	1.7	2	0	0	2	2	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|410669305|ref|YP_006921676.1|	-	0.00055	19.6	0.0	0.0012	18.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
GTP_EFTU	PF00009.27	gi|410669305|ref|YP_006921676.1|	-	0.0026	17.3	0.2	0.82	9.2	0.0	2.7	2	1	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
Roc	PF08477.13	gi|410669305|ref|YP_006921676.1|	-	0.0064	16.7	0.1	0.038	14.2	0.1	2.2	2	0	0	2	2	2	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
cobW	PF02492.19	gi|410669305|ref|YP_006921676.1|	-	0.0082	15.7	0.0	2.3	7.8	0.0	2.3	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
Ras	PF00071.22	gi|410669305|ref|YP_006921676.1|	-	0.011	15.4	0.1	0.83	9.2	0.0	2.4	2	0	0	2	2	2	0	Ras	family
IstB_IS21	PF01695.17	gi|410669305|ref|YP_006921676.1|	-	0.012	15.4	0.0	0.021	14.6	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_22	PF13401.6	gi|410669305|ref|YP_006921676.1|	-	0.021	15.1	0.0	0.046	14.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|410669305|ref|YP_006921676.1|	-	0.03	14.6	0.0	0.063	13.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|410669305|ref|YP_006921676.1|	-	0.047	14.1	0.0	0.11	12.9	0.0	1.7	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Dynamin_N	PF00350.23	gi|410669305|ref|YP_006921676.1|	-	0.054	13.6	2.4	0.13	12.3	0.2	2.4	2	1	1	3	3	3	0	Dynamin	family
MMR_HSR1_Xtn	PF16897.5	gi|410669305|ref|YP_006921676.1|	-	0.076	13.0	0.0	3.8	7.6	0.0	2.3	2	0	0	2	2	2	0	C-terminal	region	of	MMR_HSR1	domain
Sigma54_activat	PF00158.26	gi|410669305|ref|YP_006921676.1|	-	0.081	12.6	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
Guanylate_kin	PF00625.21	gi|410669305|ref|YP_006921676.1|	-	0.094	12.4	0.0	0.18	11.5	0.0	1.4	1	0	0	1	1	1	0	Guanylate	kinase
DUF815	PF05673.13	gi|410669305|ref|YP_006921676.1|	-	0.12	11.5	0.0	0.19	10.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AIG1	PF04548.16	gi|410669305|ref|YP_006921676.1|	-	0.12	11.7	0.0	0.26	10.6	0.0	1.5	1	0	0	1	1	1	0	AIG1	family
AAA_21	PF13304.6	gi|410669305|ref|YP_006921676.1|	-	0.13	12.0	0.4	0.33	10.7	0.0	1.7	2	0	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_7	PF12775.7	gi|410669305|ref|YP_006921676.1|	-	0.14	11.7	0.0	0.26	10.8	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_18	PF13238.6	gi|410669305|ref|YP_006921676.1|	-	0.15	12.6	0.4	0.29	11.7	0.0	1.7	2	0	0	2	2	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|410669305|ref|YP_006921676.1|	-	0.16	12.4	0.0	0.29	11.5	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
FKBP_C	PF00254.28	gi|410669306|ref|YP_006921677.1|	-	5.4e-10	39.5	0.1	3.8e-09	36.8	0.1	2.5	1	1	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
FKBP26_C	PF18046.1	gi|410669306|ref|YP_006921677.1|	-	2.5e-05	24.3	0.0	5.4e-05	23.2	0.0	1.6	1	0	0	1	1	1	1	FKBP26_C-terminal
DUF4298	PF14131.6	gi|410669307|ref|YP_006921678.1|	-	0.037	14.0	1.3	0.29	11.1	0.0	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4298)
Snf7	PF03357.21	gi|410669307|ref|YP_006921678.1|	-	0.057	13.0	0.1	0.075	12.6	0.1	1.1	1	0	0	1	1	1	0	Snf7
DAO	PF01266.24	gi|410669309|ref|YP_006921680.1|	-	5e-13	49.4	5.1	2.8e-06	27.2	0.4	2.2	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|410669309|ref|YP_006921680.1|	-	1.3e-09	37.6	0.0	2.2e-09	36.9	0.0	1.4	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.19	gi|410669309|ref|YP_006921680.1|	-	1.7e-08	34.1	5.4	3.5e-07	29.8	0.5	3.1	2	1	0	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|410669309|ref|YP_006921680.1|	-	1.8e-08	34.2	0.1	2.9e-08	33.5	0.1	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|410669309|ref|YP_006921680.1|	-	8.5e-08	32.3	0.1	5.6e-07	29.7	0.0	2.4	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|410669309|ref|YP_006921680.1|	-	1.2e-07	30.8	0.3	2.2e-07	30.0	0.3	1.4	1	0	0	1	1	1	1	HI0933-like	protein
Pyr_redox_2	PF07992.14	gi|410669309|ref|YP_006921680.1|	-	7.4e-07	28.7	0.4	5.3e-06	25.9	0.1	2.1	1	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|410669309|ref|YP_006921680.1|	-	2e-06	27.1	0.3	2e-06	27.1	0.3	1.8	2	0	0	2	2	2	1	FAD	binding	domain
Thi4	PF01946.17	gi|410669309|ref|YP_006921680.1|	-	4.2e-06	26.2	0.0	9e-06	25.1	0.0	1.5	1	0	0	1	1	1	1	Thi4	family
Lycopene_cycl	PF05834.12	gi|410669309|ref|YP_006921680.1|	-	8.8e-06	25.0	0.8	0.0016	17.6	0.1	2.5	2	1	0	2	2	2	2	Lycopene	cyclase	protein
Trp_halogenase	PF04820.14	gi|410669309|ref|YP_006921680.1|	-	0.0003	19.8	0.3	0.0094	14.8	0.0	2.4	2	1	0	2	2	2	1	Tryptophan	halogenase
Pyr_redox_3	PF13738.6	gi|410669309|ref|YP_006921680.1|	-	0.0022	17.3	0.1	0.0041	16.4	0.1	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|410669309|ref|YP_006921680.1|	-	0.0033	18.0	0.4	0.33	11.5	0.0	3.2	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|410669309|ref|YP_006921680.1|	-	0.0092	15.9	0.1	0.022	14.7	0.1	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|410669309|ref|YP_006921680.1|	-	0.12	11.9	0.0	0.24	11.0	0.0	1.5	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
GGACT	PF06094.12	gi|410669310|ref|YP_006921681.1|	-	2.9e-19	69.9	0.0	3.1e-19	69.7	0.0	1.0	1	0	0	1	1	1	1	Gamma-glutamyl	cyclotransferase,	AIG2-like
Radical_SAM	PF04055.21	gi|410669311|ref|YP_006921682.1|	-	6.1e-16	59.2	0.3	8e-16	58.9	0.3	1.1	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|410669311|ref|YP_006921682.1|	-	1.1e-08	35.3	0.1	1.9e-08	34.5	0.1	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|410669311|ref|YP_006921682.1|	-	0.00091	19.5	0.1	0.0014	18.9	0.1	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
DUF1918	PF08940.11	gi|410669311|ref|YP_006921682.1|	-	0.051	13.2	0.0	0.09	12.4	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1918)
MMR_HSR1	PF01926.23	gi|410669312|ref|YP_006921683.1|	-	8.4e-19	67.7	0.0	1.3e-18	67.2	0.0	1.3	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|410669312|ref|YP_006921683.1|	-	2.3e-13	50.0	1.1	4.5e-12	45.8	1.1	2.1	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
RsgA_GTPase	PF03193.16	gi|410669312|ref|YP_006921683.1|	-	9.2e-06	25.7	1.2	0.025	14.5	0.2	2.5	2	1	0	2	2	2	2	RsgA	GTPase
Dynamin_N	PF00350.23	gi|410669312|ref|YP_006921683.1|	-	0.00042	20.4	0.0	0.0007	19.7	0.0	1.5	1	1	0	1	1	1	1	Dynamin	family
GTP_EFTU	PF00009.27	gi|410669312|ref|YP_006921683.1|	-	0.00048	19.7	1.2	0.0034	16.9	0.9	2.1	1	1	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
Septin	PF00735.18	gi|410669312|ref|YP_006921683.1|	-	0.0072	15.6	0.2	0.027	13.8	0.0	2.0	1	1	1	2	2	2	1	Septin
Roc	PF08477.13	gi|410669312|ref|YP_006921683.1|	-	0.017	15.3	0.3	0.034	14.4	0.0	1.7	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
PduV-EutP	PF10662.9	gi|410669312|ref|YP_006921683.1|	-	0.019	14.7	0.1	0.27	11.0	0.0	2.1	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
SRPRB	PF09439.10	gi|410669312|ref|YP_006921683.1|	-	0.029	13.8	0.1	0.071	12.5	0.1	1.6	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
Gtr1_RagA	PF04670.12	gi|410669312|ref|YP_006921683.1|	-	0.1	11.9	1.5	0.25	10.7	1.5	1.6	1	1	0	1	1	1	0	Gtr1/RagA	G	protein	conserved	region
AIG1	PF04548.16	gi|410669312|ref|YP_006921683.1|	-	0.42	9.9	3.0	5.5	6.3	3.0	2.1	1	1	0	1	1	1	0	AIG1	family
DHHA1	PF02272.19	gi|410669313|ref|YP_006921684.1|	-	1e-10	42.2	0.2	1.6e-10	41.5	0.2	1.4	1	0	0	1	1	1	1	DHHA1	domain
DHH	PF01368.20	gi|410669313|ref|YP_006921684.1|	-	0.0016	18.6	0.2	0.0028	17.8	0.2	1.4	1	0	0	1	1	1	1	DHH	family
HTH_WhiA	PF02650.14	gi|410669313|ref|YP_006921684.1|	-	0.045	14.1	0.0	0.14	12.5	0.0	1.8	1	0	0	1	1	1	0	WhiA	C-terminal	HTH	domain
bMG10	PF17973.1	gi|410669314|ref|YP_006921685.1|	-	2.4e-05	24.5	0.1	4.6	7.5	0.0	3.5	3	0	0	3	3	3	3	Bacterial	Alpha-2-macroglobulin	MG10	domain
DUF11	PF01345.18	gi|410669314|ref|YP_006921685.1|	-	0.0001	22.6	0.0	0.00084	19.6	0.0	2.3	2	1	0	2	2	2	1	Domain	of	unknown	function	DUF11
TRAP_beta	PF05753.14	gi|410669314|ref|YP_006921685.1|	-	0.00027	20.4	0.2	0.019	14.4	0.2	2.2	1	1	1	2	2	2	1	Translocon-associated	protein	beta	(TRAPB)
Top6b_C	PF18000.1	gi|410669314|ref|YP_006921685.1|	-	0.0086	16.2	0.2	0.3	11.2	0.0	2.5	2	0	0	2	2	2	1	Type	2	DNA	topoisomerase	6	subunit	B	C-terminal	domain
BatD	PF13584.6	gi|410669314|ref|YP_006921685.1|	-	0.013	14.3	0.2	0.16	10.7	0.0	2.2	2	0	0	2	2	2	0	Oxygen	tolerance
DUF11	PF01345.18	gi|410669315|ref|YP_006921686.1|	-	4e-11	43.1	15.5	3.8e-09	36.7	2.6	3.9	5	0	0	5	5	5	2	Domain	of	unknown	function	DUF11
BatD	PF13584.6	gi|410669315|ref|YP_006921686.1|	-	1.4e-08	34.0	14.4	6.8e-05	21.9	1.3	2.9	1	1	1	2	2	2	2	Oxygen	tolerance
TRAP_beta	PF05753.14	gi|410669315|ref|YP_006921686.1|	-	1.5e-08	34.2	13.0	9.9e-06	25.1	1.1	3.4	1	1	2	3	3	3	3	Translocon-associated	protein	beta	(TRAPB)
CARDB	PF07705.11	gi|410669315|ref|YP_006921686.1|	-	2.6e-08	34.1	14.8	4.5e-05	23.6	0.9	4.3	4	1	0	4	4	4	3	CARDB
DUF4352	PF11611.8	gi|410669315|ref|YP_006921686.1|	-	0.00027	21.2	7.9	0.43	10.9	0.9	4.0	3	0	0	3	3	3	2	Domain	of	unknown	function	(DUF4352)
DUF2393	PF09624.10	gi|410669315|ref|YP_006921686.1|	-	0.0034	17.4	5.0	0.12	12.4	0.8	3.4	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF2393)
A2M	PF00207.22	gi|410669315|ref|YP_006921686.1|	-	0.013	15.3	0.1	0.052	13.4	0.1	2.0	1	0	0	1	1	1	0	Alpha-2-macroglobulin	family
ASH	PF15780.5	gi|410669315|ref|YP_006921686.1|	-	0.026	14.7	3.2	0.23	11.7	0.3	3.3	3	0	0	3	3	3	0	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
Amidase_6	PF12671.7	gi|410669315|ref|YP_006921686.1|	-	0.2	11.7	1.7	0.25	11.4	0.2	2.0	2	0	0	2	2	2	0	Putative	amidase	domain
bMG10	PF17973.1	gi|410669315|ref|YP_006921686.1|	-	0.33	11.2	7.5	25	5.1	0.1	4.1	3	1	1	4	4	4	0	Bacterial	Alpha-2-macroglobulin	MG10	domain
ATPase	PF06745.13	gi|410669317|ref|YP_006921688.1|	-	1.4e-48	165.3	0.0	3.8e-48	163.9	0.0	1.6	1	1	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|410669317|ref|YP_006921688.1|	-	2.9e-08	33.5	0.0	0.0011	18.5	0.0	2.0	2	0	0	2	2	2	2	AAA	domain
DnaB_C	PF03796.15	gi|410669317|ref|YP_006921688.1|	-	2e-06	27.4	0.0	2.9e-06	26.8	0.0	1.2	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_24	PF13479.6	gi|410669317|ref|YP_006921688.1|	-	3e-05	23.8	0.2	0.085	12.6	0.1	3.1	2	1	0	2	2	2	2	AAA	domain
Rad51	PF08423.11	gi|410669317|ref|YP_006921688.1|	-	0.00016	21.1	0.1	0.0011	18.2	0.1	2.0	2	0	0	2	2	2	1	Rad51
AAA_22	PF13401.6	gi|410669317|ref|YP_006921688.1|	-	0.0013	19.1	0.0	0.0072	16.6	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|410669317|ref|YP_006921688.1|	-	0.0016	18.6	0.0	0.0058	16.8	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_14	PF13173.6	gi|410669317|ref|YP_006921688.1|	-	0.006	16.6	0.0	0.013	15.5	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|410669317|ref|YP_006921688.1|	-	0.0074	16.7	0.0	0.039	14.4	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_11	PF13086.6	gi|410669317|ref|YP_006921688.1|	-	0.011	15.6	0.0	0.019	14.7	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
T2SSE	PF00437.20	gi|410669317|ref|YP_006921688.1|	-	0.011	14.8	0.0	0.019	14.0	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_19	PF13245.6	gi|410669317|ref|YP_006921688.1|	-	0.014	15.7	0.0	0.023	15.0	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
GvpD	PF07088.11	gi|410669317|ref|YP_006921688.1|	-	0.022	13.4	0.0	0.051	12.2	0.0	1.7	1	1	0	1	1	1	0	GvpD	gas	vesicle	protein
AAA_16	PF13191.6	gi|410669317|ref|YP_006921688.1|	-	0.023	15.1	0.0	0.027	14.8	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
RecA	PF00154.21	gi|410669317|ref|YP_006921688.1|	-	0.026	14.0	0.2	0.15	11.5	0.1	2.0	1	1	1	2	2	2	0	recA	bacterial	DNA	recombination	protein
AAA_18	PF13238.6	gi|410669317|ref|YP_006921688.1|	-	0.027	15.0	0.0	0.054	14.0	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
Rad17	PF03215.15	gi|410669317|ref|YP_006921688.1|	-	0.046	13.6	0.0	0.077	12.9	0.0	1.4	1	0	0	1	1	1	0	Rad17	P-loop	domain
TsaE	PF02367.17	gi|410669317|ref|YP_006921688.1|	-	0.061	13.3	0.0	0.14	12.2	0.0	1.6	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NACHT	PF05729.12	gi|410669317|ref|YP_006921688.1|	-	0.075	12.9	0.1	0.21	11.5	0.0	1.8	2	0	0	2	2	2	0	NACHT	domain
cobW	PF02492.19	gi|410669317|ref|YP_006921688.1|	-	0.083	12.5	0.0	0.15	11.6	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_29	PF13555.6	gi|410669317|ref|YP_006921688.1|	-	0.097	12.4	0.0	0.18	11.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DAP3	PF10236.9	gi|410669317|ref|YP_006921688.1|	-	0.11	11.7	0.0	0.17	11.0	0.0	1.2	1	0	0	1	1	1	0	Mitochondrial	ribosomal	death-associated	protein	3
AAA_30	PF13604.6	gi|410669317|ref|YP_006921688.1|	-	0.12	12.0	0.0	0.2	11.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
ATP_bind_1	PF03029.17	gi|410669317|ref|YP_006921688.1|	-	0.16	11.7	0.6	0.32	10.7	0.2	1.8	2	1	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
NIF3	PF01784.18	gi|410669318|ref|YP_006921689.1|	-	1.5e-55	188.5	0.1	1.8e-55	188.3	0.1	1.0	1	0	0	1	1	1	1	NIF3	(NGG1p	interacting	factor	3)
Trm56	PF01994.16	gi|410669320|ref|YP_006921691.1|	-	2.3e-50	169.5	0.1	2.7e-50	169.2	0.1	1.1	1	0	0	1	1	1	1	tRNA	ribose	2'-O-methyltransferase,	aTrm56
Glycos_trans_3N	PF02885.17	gi|410669321|ref|YP_006921692.1|	-	9.8e-14	51.0	0.0	2.9e-13	49.4	0.0	1.9	1	0	0	1	1	1	1	Glycosyl	transferase	family,	helical	bundle	domain
PYNP_C	PF07831.13	gi|410669321|ref|YP_006921692.1|	-	5.4e-12	45.2	0.6	2.9e-11	42.8	0.0	2.5	3	0	0	3	3	3	1	Pyrimidine	nucleoside	phosphorylase	C-terminal	domain
Glycos_transf_3	PF00591.21	gi|410669321|ref|YP_006921692.1|	-	1.1e-11	44.8	1.1	3.3e-08	33.5	0.2	3.0	3	0	0	3	3	3	2	Glycosyl	transferase	family,	a/b	domain
Molydop_binding	PF01568.21	gi|410669321|ref|YP_006921692.1|	-	1.4e-06	28.3	0.2	2.9e-06	27.3	0.2	1.4	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Biotin_lipoyl	PF00364.22	gi|410669321|ref|YP_006921692.1|	-	0.00077	19.2	0.0	0.012	15.4	0.0	3.0	2	0	0	2	2	2	1	Biotin-requiring	enzyme
CDC48_N	PF02359.18	gi|410669321|ref|YP_006921692.1|	-	0.0013	18.9	0.2	0.0033	17.6	0.2	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
DUF2254	PF10011.9	gi|410669321|ref|YP_006921692.1|	-	0.0027	16.6	0.0	0.004	16.0	0.0	1.2	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2254)
dCMP_cyt_deam_1	PF00383.23	gi|410669322|ref|YP_006921693.1|	-	2e-25	88.6	0.0	2.5e-25	88.3	0.0	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
MafB19-deam	PF14437.6	gi|410669322|ref|YP_006921693.1|	-	4.2e-23	81.6	0.0	5.2e-23	81.3	0.0	1.1	1	0	0	1	1	1	1	MafB19-like	deaminase
APOBEC3	PF18771.1	gi|410669322|ref|YP_006921693.1|	-	0.16	12.1	0.1	0.23	11.5	0.1	1.3	1	1	0	1	1	1	0	APOBEC3
DUF2162	PF09930.9	gi|410669322|ref|YP_006921693.1|	-	0.26	10.7	0.4	0.33	10.3	0.4	1.1	1	0	0	1	1	1	0	Predicted	transporter	(DUF2162)
PDT	PF00800.18	gi|410669323|ref|YP_006921694.1|	-	2.3e-54	184.0	0.1	9.7e-54	182.0	0.1	1.8	1	1	0	1	1	1	1	Prephenate	dehydratase
ACT	PF01842.25	gi|410669323|ref|YP_006921694.1|	-	1.7e-11	43.7	0.0	6.8e-11	41.8	0.0	2.0	2	0	0	2	2	2	1	ACT	domain
CM2	PF03021.14	gi|410669324|ref|YP_006921695.1|	-	0.11	12.3	0.4	1.7	8.4	0.2	2.3	2	0	0	2	2	2	0	Influenza	C	virus	M2	protein
AAA_3	PF07726.11	gi|410669325|ref|YP_006921696.1|	-	1.1e-60	203.3	0.1	1.7e-60	202.6	0.1	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|410669325|ref|YP_006921696.1|	-	2.4e-20	72.1	0.0	4.2e-20	71.3	0.0	1.4	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|410669325|ref|YP_006921696.1|	-	4.6e-12	46.1	0.0	1.7e-11	44.3	0.0	2.0	3	0	0	3	3	3	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|410669325|ref|YP_006921696.1|	-	9.1e-06	26.1	0.1	3e-05	24.4	0.0	1.9	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MCM	PF00493.23	gi|410669325|ref|YP_006921696.1|	-	0.00054	19.1	0.0	0.00099	18.3	0.0	1.5	1	0	0	1	1	1	1	MCM	P-loop	domain
Sigma54_activat	PF00158.26	gi|410669325|ref|YP_006921696.1|	-	0.00073	19.3	0.0	0.0028	17.4	0.0	1.8	1	1	0	1	1	1	1	Sigma-54	interaction	domain
RuvB_N	PF05496.12	gi|410669325|ref|YP_006921696.1|	-	0.0036	17.0	0.0	0.46	10.2	0.0	2.3	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_19	PF13245.6	gi|410669325|ref|YP_006921696.1|	-	0.026	14.9	0.0	1.5	9.1	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.21	gi|410669325|ref|YP_006921696.1|	-	0.15	11.4	0.1	1.3	8.4	0.0	2.0	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
DUF58	PF01882.18	gi|410669326|ref|YP_006921697.1|	-	4.1e-22	78.3	0.1	1.5e-21	76.5	0.1	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF58
VWA_2	PF13519.6	gi|410669326|ref|YP_006921697.1|	-	3.7e-06	27.5	0.2	8.9e-06	26.3	0.2	1.6	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.28	gi|410669326|ref|YP_006921697.1|	-	0.011	16.0	0.2	0.021	15.1	0.2	1.5	1	0	0	1	1	1	0	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.14	gi|410669326|ref|YP_006921697.1|	-	0.013	14.9	0.2	0.034	13.5	0.2	1.6	1	1	0	1	1	1	0	VWA	domain	containing	CoxE-like	protein
BatA	PF07584.11	gi|410669327|ref|YP_006921698.1|	-	7.1e-15	55.1	11.6	1.6e-14	54.0	11.6	1.6	1	0	0	1	1	1	1	Aerotolerance	regulator	N-terminal
VWA_2	PF13519.6	gi|410669327|ref|YP_006921698.1|	-	0.0013	19.3	0.9	0.0047	17.6	0.9	2.0	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
Glyco_hydro_42M	PF08532.10	gi|410669327|ref|YP_006921698.1|	-	0.002	17.6	0.4	0.0086	15.6	0.4	2.0	1	1	0	1	1	1	1	Beta-galactosidase	trimerisation	domain
ABC_transp_aux	PF09822.9	gi|410669327|ref|YP_006921698.1|	-	0.02	14.4	0.0	0.061	12.8	0.0	1.8	2	0	0	2	2	2	0	ABC-type	uncharacterized	transport	system
DUF1726	PF08351.11	gi|410669327|ref|YP_006921698.1|	-	0.06	13.3	0.0	0.2	11.6	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1726)
Glyco_hydro_30C	PF17189.4	gi|410669327|ref|YP_006921698.1|	-	1.2	9.4	5.7	4.9	7.4	0.2	3.8	4	0	0	4	4	4	0	Glycosyl	hydrolase	family	30	beta	sandwich	domain
VWA	PF00092.28	gi|410669328|ref|YP_006921699.1|	-	7.8e-09	36.0	3.2	6.7e-05	23.2	0.1	2.9	2	1	0	2	2	2	2	von	Willebrand	factor	type	A	domain
GATase1_like	PF07090.11	gi|410669328|ref|YP_006921699.1|	-	9.7e-07	28.5	0.0	0.0095	15.4	0.0	2.3	2	0	0	2	2	2	2	Putative	glutamine	amidotransferase
VWA_2	PF13519.6	gi|410669328|ref|YP_006921699.1|	-	5.5e-06	27.0	0.3	0.00025	21.7	0.0	2.8	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
COX1	PF00115.20	gi|410669328|ref|YP_006921699.1|	-	0.41	9.5	1.3	0.72	8.6	1.3	1.3	1	0	0	1	1	1	0	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
BatA	PF07584.11	gi|410669328|ref|YP_006921699.1|	-	0.53	10.7	9.4	2.2	8.7	0.2	3.0	2	1	1	3	3	3	0	Aerotolerance	regulator	N-terminal
CheF-arch	PF04283.12	gi|410669329|ref|YP_006921700.1|	-	0.12	12.1	0.0	0.23	11.2	0.0	1.4	1	0	0	1	1	1	0	Chemotaxis	signal	transduction	system	protein	F	from	archaea
Cys_Met_Meta_PP	PF01053.20	gi|410669330|ref|YP_006921701.1|	-	4.1e-143	476.5	0.0	4.6e-143	476.4	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|410669330|ref|YP_006921701.1|	-	4.8e-12	45.9	0.0	1.5e-11	44.2	0.0	1.7	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.19	gi|410669330|ref|YP_006921701.1|	-	1.3e-08	34.2	0.2	2.1e-08	33.6	0.2	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.21	gi|410669330|ref|YP_006921701.1|	-	1.1e-06	28.1	0.0	1.6e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|410669330|ref|YP_006921701.1|	-	0.0021	17.4	0.0	0.0047	16.2	0.0	1.6	1	1	0	1	1	1	1	Beta-eliminating	lyase
Met_gamma_lyase	PF06838.11	gi|410669330|ref|YP_006921701.1|	-	0.0075	14.8	2.6	0.12	10.9	2.6	2.0	1	1	0	1	1	1	1	Methionine	gamma-lyase
GDC-P	PF02347.16	gi|410669330|ref|YP_006921701.1|	-	0.025	13.4	0.0	0.037	12.9	0.0	1.1	1	0	0	1	1	1	0	Glycine	cleavage	system	P-protein
SepSecS	PF05889.13	gi|410669330|ref|YP_006921701.1|	-	0.045	12.4	0.0	0.064	11.9	0.0	1.1	1	0	0	1	1	1	0	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
Abhydrolase_1	PF00561.20	gi|410669331|ref|YP_006921702.1|	-	6.3e-32	111.2	0.1	8.1e-32	110.9	0.1	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
CBS	PF00571.28	gi|410669331|ref|YP_006921702.1|	-	3.8e-24	84.9	1.9	2.1e-11	44.1	0.1	3.1	3	0	0	3	3	3	2	CBS	domain
Hydrolase_4	PF12146.8	gi|410669331|ref|YP_006921702.1|	-	0.00019	20.8	0.0	0.0015	17.9	0.0	2.0	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Esterase	PF00756.20	gi|410669331|ref|YP_006921702.1|	-	0.059	13.0	0.1	0.096	12.3	0.1	1.3	1	0	0	1	1	1	0	Putative	esterase
Peptidase_S9	PF00326.21	gi|410669331|ref|YP_006921702.1|	-	0.13	11.7	0.0	5.6	6.4	0.0	2.2	2	0	0	2	2	2	0	Prolyl	oligopeptidase	family
MarR	PF01047.22	gi|410669332|ref|YP_006921703.1|	-	0.00039	20.3	0.0	0.00056	19.8	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|410669332|ref|YP_006921703.1|	-	0.00056	19.7	0.0	0.00076	19.3	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_36	PF13730.6	gi|410669332|ref|YP_006921703.1|	-	0.00093	19.1	0.0	0.0016	18.3	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|410669332|ref|YP_006921703.1|	-	0.0021	17.9	0.0	0.003	17.4	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|410669332|ref|YP_006921703.1|	-	0.0046	16.5	0.0	0.0065	16.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Fe_dep_repress	PF01325.19	gi|410669332|ref|YP_006921703.1|	-	0.0058	16.8	0.0	0.0092	16.2	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.12	gi|410669332|ref|YP_006921703.1|	-	0.0074	16.2	0.0	0.012	15.5	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
RepL	PF05732.11	gi|410669332|ref|YP_006921703.1|	-	0.023	14.1	0.0	0.025	14.0	0.0	1.3	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_Crp_2	PF13545.6	gi|410669332|ref|YP_006921703.1|	-	0.024	14.6	0.1	0.093	12.7	0.1	1.9	1	1	1	2	2	2	0	Crp-like	helix-turn-helix	domain
Phage_rep_O	PF04492.13	gi|410669332|ref|YP_006921703.1|	-	0.026	15.1	0.0	0.047	14.3	0.0	1.5	1	0	0	1	1	1	0	Bacteriophage	replication	protein	O
TFIIE_alpha	PF02002.17	gi|410669332|ref|YP_006921703.1|	-	0.037	13.9	0.2	0.047	13.5	0.2	1.3	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_23	PF13384.6	gi|410669332|ref|YP_006921703.1|	-	0.052	13.4	0.1	0.19	11.6	0.0	1.9	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_IclR	PF09339.10	gi|410669332|ref|YP_006921703.1|	-	0.067	13.0	0.0	0.097	12.5	0.0	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
GntR	PF00392.21	gi|410669332|ref|YP_006921703.1|	-	0.12	12.0	0.2	0.25	11.0	0.0	1.5	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|410669332|ref|YP_006921703.1|	-	0.12	12.3	0.0	0.19	11.6	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Fer4_5	PF12801.7	gi|410669333|ref|YP_006921704.1|	-	4.1e-12	45.8	12.0	2.3e-11	43.4	2.3	3.5	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|410669333|ref|YP_006921704.1|	-	2.2e-09	37.3	14.8	7.3e-05	22.9	3.5	3.1	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410669333|ref|YP_006921704.1|	-	1.9e-07	30.8	18.1	7.9e-05	22.6	3.7	2.7	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410669333|ref|YP_006921704.1|	-	2.4e-07	30.7	14.9	0.00025	21.1	2.9	2.6	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|410669333|ref|YP_006921704.1|	-	4.6e-07	30.3	17.0	0.00027	21.4	3.2	3.2	3	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|410669333|ref|YP_006921704.1|	-	4.7e-07	29.4	23.8	2.6e-05	23.8	4.9	3.5	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|410669333|ref|YP_006921704.1|	-	2.7e-05	24.2	22.9	0.00012	22.1	17.8	3.0	3	1	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|410669333|ref|YP_006921704.1|	-	0.00024	21.3	13.1	0.00032	20.9	11.8	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410669333|ref|YP_006921704.1|	-	0.00046	20.7	19.4	0.11	13.1	7.3	3.1	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410669333|ref|YP_006921704.1|	-	0.0014	19.5	19.5	0.0016	19.4	3.2	3.1	4	0	0	4	4	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|410669333|ref|YP_006921704.1|	-	0.0035	17.4	14.4	0.018	15.1	1.9	3.1	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|410669333|ref|YP_006921704.1|	-	0.0085	17.0	5.8	0.0085	17.0	5.8	3.8	4	0	0	4	4	4	1	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|410669333|ref|YP_006921704.1|	-	0.01	16.7	11.4	0.26	12.2	1.5	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|410669333|ref|YP_006921704.1|	-	0.014	15.8	17.9	0.28	11.7	4.0	2.7	2	1	1	3	3	2	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410669333|ref|YP_006921704.1|	-	0.052	14.1	4.4	0.052	14.1	4.4	3.3	4	0	0	4	4	3	0	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|410669333|ref|YP_006921704.1|	-	1.2	9.7	20.4	0.35	11.5	4.4	2.7	2	1	1	3	3	3	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
ETF_QO	PF05187.13	gi|410669333|ref|YP_006921704.1|	-	1.3	9.2	9.9	0.12	12.5	2.5	2.1	1	1	1	2	2	2	0	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
DUF4407	PF14362.6	gi|410669333|ref|YP_006921704.1|	-	4.4	6.6	6.4	9.2	5.5	6.4	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
FapA	PF03961.13	gi|410669335|ref|YP_006921706.1|	-	0.0073	15.0	13.3	0.03	12.9	13.3	1.7	1	1	0	1	1	1	1	Flagellar	Assembly	Protein	A
DUF4328	PF14219.6	gi|410669335|ref|YP_006921706.1|	-	0.0095	15.5	1.1	0.0095	15.5	1.1	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4328)
DUF1345	PF07077.11	gi|410669335|ref|YP_006921706.1|	-	0.59	9.8	8.3	0.058	13.1	2.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1345)
FA_desaturase	PF00487.24	gi|410669335|ref|YP_006921706.1|	-	5.3	6.8	15.5	0.14	11.9	7.4	2.0	1	1	1	2	2	2	0	Fatty	acid	desaturase
Polyketide_cyc2	PF10604.9	gi|410669336|ref|YP_006921707.1|	-	1.7e-11	44.5	0.0	2e-11	44.3	0.0	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.11	gi|410669336|ref|YP_006921707.1|	-	0.00055	20.2	0.0	0.00058	20.1	0.0	1.1	1	0	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
Polyketide_cyc	PF03364.20	gi|410669336|ref|YP_006921707.1|	-	0.0039	17.4	0.0	0.0048	17.1	0.0	1.5	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Citrate_synt	PF00285.21	gi|410669337|ref|YP_006921708.1|	-	1.1e-115	386.6	0.0	1.2e-115	386.4	0.0	1.0	1	0	0	1	1	1	1	Citrate	synthase,	C-terminal	domain
DUF4214	PF13946.6	gi|410669337|ref|YP_006921708.1|	-	0.054	13.6	0.1	1.8	8.7	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4214)
Aconitase	PF00330.20	gi|410669338|ref|YP_006921709.1|	-	7.6e-175	582.3	0.0	1e-174	581.9	0.0	1.1	1	0	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.19	gi|410669338|ref|YP_006921709.1|	-	6.7e-43	146.1	0.0	1.7e-42	144.9	0.0	1.7	2	0	0	2	2	2	1	Aconitase	C-terminal	domain
DUF4096	PF13340.6	gi|410669341|ref|YP_006921712.1|	-	2.1e-27	95.1	0.6	2.7e-27	94.8	0.6	1.1	1	0	0	1	1	1	1	Putative	transposase	of	IS4/5	family	(DUF4096)
DDE_Tnp_1_2	PF13586.6	gi|410669342|ref|YP_006921713.1|	-	3.3e-26	91.5	3.8	6.8e-15	55.2	0.1	2.9	2	1	1	3	3	3	2	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|410669342|ref|YP_006921713.1|	-	1.2e-17	64.3	8.5	5.4e-09	36.0	0.5	2.4	1	1	1	2	2	2	2	Transposase	DDE	domain
DDE_Tnp_4	PF13359.6	gi|410669342|ref|YP_006921713.1|	-	0.00041	20.1	0.4	0.17	11.5	0.0	2.1	1	1	1	2	2	2	2	DDE	superfamily	endonuclease
DDE_Tnp_1_6	PF13751.6	gi|410669342|ref|YP_006921713.1|	-	0.0085	16.3	1.2	0.64	10.3	0.3	2.3	2	0	0	2	2	2	2	Transposase	DDE	domain
DUF4687	PF15747.5	gi|410669342|ref|YP_006921713.1|	-	8.9	6.8	7.7	24	5.5	1.1	2.2	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4687)
Plasmid_parti	PF01672.16	gi|410669343|ref|YP_006921714.1|	-	0.11	13.2	0.8	0.4	11.4	0.3	2.0	2	0	0	2	2	2	0	Putative	plasmid	partition	protein
UNC-50	PF05216.13	gi|410669344|ref|YP_006921715.1|	-	0.00099	18.7	0.2	0.0011	18.6	0.2	1.1	1	0	0	1	1	1	1	UNC-50	family
LapA_dom	PF06305.11	gi|410669344|ref|YP_006921715.1|	-	5.1	7.0	5.6	82	3.1	5.6	2.3	1	1	0	1	1	1	0	Lipopolysaccharide	assembly	protein	A	domain
DUF4199	PF13858.6	gi|410669345|ref|YP_006921716.1|	-	0.0012	19.3	0.1	0.0017	18.8	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4199)
Cut12	PF11500.8	gi|410669345|ref|YP_006921716.1|	-	0.14	12.1	3.9	0.22	11.5	3.9	1.3	1	0	0	1	1	1	0	Spindle	pole	body	formation-associated	protein
RWD	PF05773.22	gi|410669346|ref|YP_006921717.1|	-	0.022	15.0	1.5	0.032	14.5	1.0	1.5	1	1	0	1	1	1	0	RWD	domain
Ubiquitin_5	PF18037.1	gi|410669346|ref|YP_006921717.1|	-	0.089	13.2	0.2	0.26	11.6	0.0	1.9	2	0	0	2	2	2	0	Ubiquitin-like	domain
APC_rep	PF18797.1	gi|410669346|ref|YP_006921717.1|	-	0.15	13.0	0.1	0.3	12.0	0.1	1.5	1	0	0	1	1	1	0	Adenomatous	polyposis	coli	(APC)	repeat
Phage_integrase	PF00589.22	gi|410669347|ref|YP_006921718.1|	-	7.8e-13	48.6	0.3	5.5e-12	45.8	0.3	2.2	1	1	0	1	1	1	1	Phage	integrase	family
Phage_integr_3	PF16795.5	gi|410669347|ref|YP_006921718.1|	-	0.00053	19.9	0.4	0.0015	18.4	0.1	2.0	2	0	0	2	2	2	1	Archaeal	phage	integrase
RMI1_C	PF16099.5	gi|410669347|ref|YP_006921718.1|	-	0.025	14.4	0.0	0.98	9.3	0.0	2.6	2	1	0	2	2	2	0	Recq-mediated	genome	instability	protein	1,	C-terminal	OB-fold
UCH	PF00443.29	gi|410669347|ref|YP_006921718.1|	-	0.077	12.5	0.3	9.2	5.7	0.0	2.3	2	0	0	2	2	2	0	Ubiquitin	carboxyl-terminal	hydrolase
GerD	PF17898.1	gi|410669347|ref|YP_006921718.1|	-	0.14	12.1	3.2	0.32	11.0	1.2	2.5	3	0	0	3	3	3	0	Spore	germination	GerD	central	core	domain
Shugoshin_N	PF07558.11	gi|410669347|ref|YP_006921718.1|	-	0.21	11.5	5.2	1.5	8.8	0.3	2.6	2	0	0	2	2	2	0	Shugoshin	N-terminal	coiled-coil	region
SPASM	PF13186.6	gi|410669347|ref|YP_006921718.1|	-	0.23	12.0	0.5	1.2	9.7	0.0	2.4	2	0	0	2	2	2	0	Iron-sulfur	cluster-binding	domain
AAA_14	PF13173.6	gi|410669348|ref|YP_006921719.1|	-	2.8e-11	43.5	0.4	0.00029	20.9	0.1	2.2	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|410669348|ref|YP_006921719.1|	-	1e-10	42.3	0.0	1.4e-10	41.9	0.0	1.1	1	0	0	1	1	1	1	AAA	ATPase	domain
ATPase_2	PF01637.18	gi|410669348|ref|YP_006921719.1|	-	8.4e-10	39.0	1.7	2.4e-09	37.4	1.7	1.6	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_22	PF13401.6	gi|410669348|ref|YP_006921719.1|	-	1.6e-06	28.4	0.0	6.1e-06	26.6	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_35	PF14516.6	gi|410669348|ref|YP_006921719.1|	-	3.9e-05	22.6	0.1	0.0084	15.0	0.0	2.1	2	0	0	2	2	2	2	AAA-like	domain
AAA	PF00004.29	gi|410669348|ref|YP_006921719.1|	-	0.0025	18.3	0.2	0.026	15.0	0.2	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_24	PF13479.6	gi|410669348|ref|YP_006921719.1|	-	0.064	13.0	0.0	0.31	10.7	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
AAA_5	PF07728.14	gi|410669350|ref|YP_006921721.1|	-	4.5e-15	55.9	0.1	8.6e-11	42.0	0.0	3.1	2	1	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|410669350|ref|YP_006921721.1|	-	5.4e-06	26.9	0.0	0.09	13.2	0.0	3.0	3	0	0	3	3	3	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.6	gi|410669350|ref|YP_006921721.1|	-	5.2e-05	22.9	0.0	0.0001	21.9	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|410669350|ref|YP_006921721.1|	-	0.0033	17.2	0.0	0.01	15.6	0.0	1.8	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_19	PF13245.6	gi|410669350|ref|YP_006921721.1|	-	0.0076	16.6	0.0	1.6	9.0	0.0	2.6	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|410669350|ref|YP_006921721.1|	-	0.015	15.5	0.0	0.77	10.0	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|410669350|ref|YP_006921721.1|	-	0.15	12.5	0.0	0.58	10.6	0.0	2.1	1	0	0	1	1	1	0	RNA	helicase
AAA_16	PF13191.6	gi|410669350|ref|YP_006921721.1|	-	0.2	12.0	0.0	1.1	9.7	0.0	2.2	2	0	0	2	2	2	0	AAA	ATPase	domain
McrBC	PF10117.9	gi|410669351|ref|YP_006921722.1|	-	3.8e-81	272.7	0.6	5.4e-81	272.2	0.6	1.2	1	0	0	1	1	1	1	McrBC	5-methylcytosine	restriction	system	component
Thg1	PF04446.12	gi|410669352|ref|YP_006921723.1|	-	0.074	13.1	0.9	12	5.9	0.1	3.0	2	1	1	3	3	3	0	tRNAHis	guanylyltransferase
Sigma70_r1_1	PF03979.14	gi|410669353|ref|YP_006921724.1|	-	0.043	13.9	0.2	3.4	7.8	0.0	2.4	2	0	0	2	2	2	0	Sigma-70	factor,	region	1.1
PCI	PF01399.27	gi|410669353|ref|YP_006921724.1|	-	0.054	14.0	0.1	1.8	9.1	0.0	2.4	2	0	0	2	2	2	0	PCI	domain
DUF4592	PF15262.6	gi|410669355|ref|YP_006921726.1|	-	0.18	12.5	0.0	0.21	12.3	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4592)
DUF1788	PF08747.11	gi|410669356|ref|YP_006921727.1|	-	2.9e-41	140.3	0.0	4.3e-41	139.8	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1788)
AAA_22	PF13401.6	gi|410669357|ref|YP_006921728.1|	-	0.13	12.6	0.1	24	5.2	0.0	3.3	2	1	0	3	3	3	0	AAA	domain
N6_Mtase	PF02384.16	gi|410669358|ref|YP_006921729.1|	-	3.6e-13	49.5	0.0	2e-06	27.3	0.0	2.4	2	0	0	2	2	2	2	N-6	DNA	Methylase
Eco57I	PF07669.11	gi|410669358|ref|YP_006921729.1|	-	4.1e-07	30.5	0.0	1.8e-06	28.4	0.0	2.1	2	0	0	2	2	2	1	Eco57I	restriction-modification	methylase
HATPase_c_4	PF13749.6	gi|410669359|ref|YP_006921730.1|	-	6.1e-25	87.2	0.0	1.2e-24	86.3	0.0	1.4	1	0	0	1	1	1	1	Putative	ATP-dependent	DNA	helicase	recG	C-terminal
AlbA_2	PF04326.14	gi|410669359|ref|YP_006921730.1|	-	3.4e-23	82.3	0.0	7.7e-23	81.1	0.0	1.6	1	0	0	1	1	1	1	Putative	DNA-binding	domain
HTH_34	PF13601.6	gi|410669359|ref|YP_006921730.1|	-	0.00068	19.8	0.2	0.0017	18.5	0.1	1.7	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
Replic_Relax	PF13814.6	gi|410669359|ref|YP_006921730.1|	-	0.14	12.2	0.0	0.29	11.2	0.0	1.5	1	0	0	1	1	1	0	Replication-relaxation
AvrM-A	PF18241.1	gi|410669360|ref|YP_006921731.1|	-	0.1	13.0	0.3	4.4	7.7	0.2	2.5	2	0	0	2	2	2	0	Flax-rust	effector	AvrM-A
APOC4	PF15119.6	gi|410669360|ref|YP_006921731.1|	-	0.17	12.2	0.4	0.58	10.5	0.0	2.0	2	0	0	2	2	2	0	Apolipoprotein	C4
DUF365	PF04033.12	gi|410669361|ref|YP_006921732.1|	-	3.5e-08	33.6	0.7	3.5e-08	33.6	0.7	1.8	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF365)
EVE	PF01878.18	gi|410669361|ref|YP_006921732.1|	-	0.025	14.6	0.2	0.04	13.9	0.2	1.5	1	1	0	1	1	1	0	EVE	domain
DUF1493	PF07377.12	gi|410669361|ref|YP_006921732.1|	-	0.037	14.5	0.1	0.064	13.7	0.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1493)
HD	PF01966.22	gi|410669362|ref|YP_006921733.1|	-	4.6e-16	59.1	0.3	1.9e-15	57.1	0.0	2.1	2	0	0	2	2	2	1	HD	domain
HD_assoc	PF13286.6	gi|410669362|ref|YP_006921733.1|	-	3.5e-12	46.7	0.1	9.1e-05	22.9	0.0	3.2	3	0	0	3	3	3	2	Phosphohydrolase-associated	domain
PglZ	PF08665.12	gi|410669363|ref|YP_006921734.1|	-	3.1e-54	183.7	0.1	9e-54	182.2	0.1	1.8	1	0	0	1	1	1	1	PglZ	domain
Phosphodiest	PF01663.22	gi|410669363|ref|YP_006921734.1|	-	0.011	15.4	0.0	0.025	14.2	0.0	1.5	1	1	0	1	1	1	0	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
UBA_3	PF09288.10	gi|410669363|ref|YP_006921734.1|	-	0.02	14.7	0.5	0.22	11.4	0.1	2.9	2	0	0	2	2	2	0	Fungal	ubiquitin-associated	domain
Metalloenzyme	PF01676.18	gi|410669363|ref|YP_006921734.1|	-	0.21	10.9	0.2	0.46	9.8	0.2	1.5	1	0	0	1	1	1	0	Metalloenzyme	superfamily
Lon_2	PF13337.6	gi|410669364|ref|YP_006921735.1|	-	2.1e-203	675.9	0.0	2.6e-203	675.6	0.0	1.1	1	0	0	1	1	1	1	Putative	ATP-dependent	Lon	protease
Lon_C	PF05362.13	gi|410669364|ref|YP_006921735.1|	-	1.8e-11	44.0	0.0	3.5e-11	43.0	0.0	1.4	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
ChlI	PF13541.6	gi|410669364|ref|YP_006921735.1|	-	0.073	12.9	0.1	0.17	11.7	0.1	1.7	1	0	0	1	1	1	0	Subunit	ChlI	of	Mg-chelatase
CoiA	PF06054.11	gi|410669365|ref|YP_006921736.1|	-	2.2e-09	37.0	0.8	5.1e-09	35.8	0.8	1.5	1	0	0	1	1	1	1	Competence	protein	CoiA-like	family
SKA2	PF16740.5	gi|410669365|ref|YP_006921736.1|	-	0.00053	19.7	6.3	0.33	10.8	0.0	4.2	3	1	1	4	4	4	1	Spindle	and	kinetochore-associated	protein	2
DUF2130	PF09903.9	gi|410669365|ref|YP_006921736.1|	-	0.0057	16.0	3.3	0.012	14.8	3.3	1.6	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2130)
PLC-beta_C	PF08703.10	gi|410669365|ref|YP_006921736.1|	-	0.018	15.0	4.3	0.038	14.0	4.3	1.5	1	0	0	1	1	1	0	PLC-beta	C	terminal
Nup54	PF13874.6	gi|410669365|ref|YP_006921736.1|	-	0.035	14.2	1.9	0.068	13.3	1.4	1.6	1	1	0	1	1	1	0	Nucleoporin	complex	subunit	54
GrpE	PF01025.19	gi|410669365|ref|YP_006921736.1|	-	0.057	13.1	9.6	0.054	13.2	6.4	2.6	2	1	0	2	2	2	0	GrpE
HCMV_UL139	PF12507.8	gi|410669365|ref|YP_006921736.1|	-	0.12	12.7	0.3	0.24	11.8	0.3	1.5	1	0	0	1	1	1	0	Human	Cytomegalovirus	UL139	protein
Rhodanese_C	PF12368.8	gi|410669365|ref|YP_006921736.1|	-	0.13	12.6	5.3	0.12	12.7	2.5	2.1	2	0	0	2	2	2	0	Rhodanase	C-terminal
Sigma70_ner	PF04546.13	gi|410669365|ref|YP_006921736.1|	-	0.15	11.9	3.8	0.33	10.8	3.1	1.9	1	1	1	2	2	2	0	Sigma-70,	non-essential	region
Laminin_I	PF06008.14	gi|410669365|ref|YP_006921736.1|	-	0.2	11.4	4.0	0.52	10.0	2.1	2.0	1	1	1	2	2	2	0	Laminin	Domain	I
zf-C4_ClpX	PF06689.13	gi|410669365|ref|YP_006921736.1|	-	0.23	11.4	2.5	15	5.6	0.2	2.6	2	0	0	2	2	2	0	ClpX	C4-type	zinc	finger
YlqD	PF11068.8	gi|410669365|ref|YP_006921736.1|	-	0.23	11.8	3.3	0.27	11.6	1.4	2.1	1	1	1	2	2	2	0	YlqD	protein
Ribosomal_L37ae	PF01780.19	gi|410669365|ref|YP_006921736.1|	-	0.31	11.2	2.3	6.6	6.9	0.0	2.4	2	0	0	2	2	2	0	Ribosomal	L37ae	protein	family
Syntaxin_2	PF14523.6	gi|410669365|ref|YP_006921736.1|	-	1.2	9.5	5.9	8.7	6.8	2.5	2.7	1	1	1	2	2	2	0	Syntaxin-like	protein
zinc-ribbons_6	PF07191.12	gi|410669365|ref|YP_006921736.1|	-	1.3	9.0	8.1	7.9	6.5	3.3	2.7	3	0	0	3	3	3	0	zinc-ribbons
DUF4446	PF14584.6	gi|410669365|ref|YP_006921736.1|	-	1.5	8.8	6.1	1.5	8.8	1.9	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4446)
Prok-RING_4	PF14447.6	gi|410669365|ref|YP_006921736.1|	-	3	7.8	11.9	1.3	9.0	8.7	2.0	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	4
Zn_Tnp_IS1595	PF12760.7	gi|410669365|ref|YP_006921736.1|	-	3.2	7.8	7.0	43	4.2	0.9	3.3	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
YabA	PF06156.13	gi|410669365|ref|YP_006921736.1|	-	3.5	8.3	9.0	63	4.3	7.5	3.4	1	1	1	2	2	2	0	Initiation	control	protein	YabA
APG6_N	PF17675.1	gi|410669365|ref|YP_006921736.1|	-	6	7.4	18.5	1.1	9.8	6.1	3.9	4	0	0	4	4	4	0	Apg6	coiled-coil	region
DivIC	PF04977.15	gi|410669365|ref|YP_006921736.1|	-	6.2	6.7	17.8	5.3	6.9	0.8	4.2	2	1	2	4	4	4	0	Septum	formation	initiator
ResIII	PF04851.15	gi|410669366|ref|YP_006921737.1|	-	2.4e-14	53.7	0.0	2.4e-14	53.7	0.0	2.9	2	2	0	2	2	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|410669366|ref|YP_006921737.1|	-	3e-14	53.3	2.3	3.2e-14	53.2	0.1	2.2	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
TPR_2	PF07719.17	gi|410669366|ref|YP_006921737.1|	-	1.3e-12	46.8	4.0	0.00031	20.6	0.3	4.1	4	0	0	4	4	4	2	Tetratricopeptide	repeat
TPR_1	PF00515.28	gi|410669366|ref|YP_006921737.1|	-	2.3e-10	39.9	4.6	0.00031	20.4	0.0	3.6	3	0	0	3	3	3	2	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|410669366|ref|YP_006921737.1|	-	6e-09	35.4	6.0	2.6e-05	24.1	0.3	4.1	4	0	0	4	4	4	2	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|410669366|ref|YP_006921737.1|	-	5.3e-08	32.4	0.1	2.3e-07	30.4	0.0	2.1	2	0	0	2	2	2	1	TPR	repeat
TPR_16	PF13432.6	gi|410669366|ref|YP_006921737.1|	-	2e-06	28.4	0.0	0.0013	19.3	0.0	2.5	2	0	0	2	2	2	1	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|410669366|ref|YP_006921737.1|	-	0.00034	20.8	0.1	0.0017	18.6	0.0	2.3	2	0	0	2	2	2	1	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|410669366|ref|YP_006921737.1|	-	0.00065	19.9	0.2	0.026	14.8	0.0	2.7	2	1	0	2	2	2	1	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|410669366|ref|YP_006921737.1|	-	0.001	19.5	0.1	0.91	10.1	0.1	2.6	1	1	1	2	2	2	2	Tetratricopeptide	repeat
PknG_TPR	PF16918.5	gi|410669366|ref|YP_006921737.1|	-	0.0095	14.7	0.0	0.031	13.0	0.0	1.7	2	0	0	2	2	2	1	Protein	kinase	G	tetratricopeptide	repeat
TPR_14	PF13428.6	gi|410669366|ref|YP_006921737.1|	-	0.015	16.1	0.0	1.6	9.8	0.0	3.3	1	1	2	3	3	3	0	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|410669366|ref|YP_006921737.1|	-	0.038	14.0	0.2	18	5.7	0.0	3.0	2	0	0	2	2	2	0	Tetratricopeptide	repeat
Helicase_C_2	PF13307.6	gi|410669366|ref|YP_006921737.1|	-	0.053	13.7	0.1	1.6	8.9	0.0	2.7	1	1	1	2	2	2	0	Helicase	C-terminal	domain
Peripla_BP_1	PF00532.21	gi|410669366|ref|YP_006921737.1|	-	0.075	12.5	0.0	0.48	9.8	0.0	2.1	2	0	0	2	2	2	0	Periplasmic	binding	proteins	and	sugar	binding	domain	of	LacI	family
DEAD	PF00270.29	gi|410669366|ref|YP_006921737.1|	-	0.08	12.7	0.6	0.51	10.1	0.1	2.6	2	1	0	2	2	2	0	DEAD/DEAH	box	helicase
UvrD-helicase	PF00580.21	gi|410669367|ref|YP_006921738.1|	-	8.9e-61	206.1	2.9	1e-59	202.7	2.9	2.4	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.6	gi|410669367|ref|YP_006921738.1|	-	1.5e-41	143.0	0.2	1.5e-41	143.0	0.2	2.0	2	1	1	3	3	3	1	UvrD-like	helicase	C-terminal	domain
PDDEXK_1	PF12705.7	gi|410669367|ref|YP_006921738.1|	-	3.1e-41	142.0	0.0	7.4e-41	140.7	0.0	1.7	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
AAA_19	PF13245.6	gi|410669367|ref|YP_006921738.1|	-	6.4e-29	101.2	0.0	9.4e-28	97.4	0.0	2.4	3	0	0	3	3	3	1	AAA	domain
UvrD_C_2	PF13538.6	gi|410669367|ref|YP_006921738.1|	-	2e-12	46.8	1.4	5.7e-06	26.1	0.1	2.9	3	0	0	3	3	3	2	UvrD-like	helicase	C-terminal	domain
AAA_12	PF13087.6	gi|410669367|ref|YP_006921738.1|	-	1.2e-05	25.1	0.3	0.0031	17.2	0.0	3.2	2	1	0	3	3	3	1	AAA	domain
AAA_30	PF13604.6	gi|410669367|ref|YP_006921738.1|	-	4.3e-05	23.3	0.0	0.00084	19.1	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
DUF2800	PF10926.8	gi|410669367|ref|YP_006921738.1|	-	0.00011	21.6	0.0	0.00017	21.0	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2800)
Cas_Cas4	PF01930.17	gi|410669367|ref|YP_006921738.1|	-	0.00014	22.0	1.6	0.00032	20.8	0.0	2.4	3	0	0	3	3	3	1	Domain	of	unknown	function	DUF83
Viral_helicase1	PF01443.18	gi|410669367|ref|YP_006921738.1|	-	0.00021	21.1	1.2	3.3	7.4	0.0	3.9	4	0	0	4	4	4	2	Viral	(Superfamily	1)	RNA	helicase
AAA_11	PF13086.6	gi|410669367|ref|YP_006921738.1|	-	0.018	14.9	0.3	0.073	12.8	0.0	2.2	3	0	0	3	3	3	0	AAA	domain
HTH_5	PF01022.20	gi|410669368|ref|YP_006921739.1|	-	6.3e-06	26.0	0.0	1.4e-05	24.9	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|410669368|ref|YP_006921739.1|	-	2e-05	24.0	0.0	3.6e-05	23.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|410669368|ref|YP_006921739.1|	-	2.4e-05	24.2	0.0	5.1e-05	23.1	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Cas_APE2256	PF09651.10	gi|410669368|ref|YP_006921739.1|	-	4.8e-05	23.3	0.1	7e-05	22.7	0.1	1.3	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_APE2256)
DUF1887	PF09002.11	gi|410669368|ref|YP_006921739.1|	-	0.00026	19.8	0.1	0.00032	19.5	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1887)
HTH_20	PF12840.7	gi|410669368|ref|YP_006921739.1|	-	0.0023	18.0	0.0	0.0049	16.9	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|410669368|ref|YP_006921739.1|	-	0.0035	17.1	0.0	0.0054	16.5	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_45	PF14947.6	gi|410669368|ref|YP_006921739.1|	-	0.0083	16.1	0.0	0.015	15.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|410669368|ref|YP_006921739.1|	-	0.016	15.7	0.0	0.029	14.8	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HrcA_DNA-bdg	PF03444.15	gi|410669368|ref|YP_006921739.1|	-	0.019	14.6	0.3	0.19	11.4	0.0	2.3	2	0	0	2	2	2	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.20	gi|410669368|ref|YP_006921739.1|	-	0.022	15.1	0.0	0.047	14.0	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
Cas_Cas02710	PF09670.10	gi|410669368|ref|YP_006921739.1|	-	0.045	12.6	0.1	0.06	12.2	0.1	1.1	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_Cas02710)
HTH_11	PF08279.12	gi|410669368|ref|YP_006921739.1|	-	0.05	13.6	0.0	0.1	12.6	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
HTH_34	PF13601.6	gi|410669368|ref|YP_006921739.1|	-	0.053	13.7	0.1	0.18	12.0	0.1	1.9	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF3791	PF12668.7	gi|410669368|ref|YP_006921739.1|	-	0.082	13.0	0.0	0.2	11.7	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3791)
HTH_40	PF14493.6	gi|410669368|ref|YP_006921739.1|	-	0.09	13.2	0.0	0.19	12.2	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_36	PF13730.6	gi|410669368|ref|YP_006921739.1|	-	0.14	12.1	0.0	0.52	10.3	0.0	1.9	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_28	PF13518.6	gi|410669368|ref|YP_006921739.1|	-	0.14	12.3	0.0	0.31	11.2	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
SPASM	PF13186.6	gi|410669370|ref|YP_006921741.1|	-	6.5e-12	45.8	5.4	9.8e-12	45.2	2.1	2.4	2	0	0	2	2	2	1	Iron-sulfur	cluster-binding	domain
Radical_SAM	PF04055.21	gi|410669370|ref|YP_006921741.1|	-	3.8e-06	27.4	0.0	5.9e-06	26.8	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Radical_SAM	PF04055.21	gi|410669372|ref|YP_006921743.1|	-	4.1e-13	50.0	0.0	6.6e-13	49.4	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|410669372|ref|YP_006921743.1|	-	2.7e-08	34.2	0.4	8.2e-08	32.6	0.4	1.8	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|410669372|ref|YP_006921743.1|	-	4.1e-06	26.9	0.8	1e-05	25.6	0.5	1.9	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|410669372|ref|YP_006921743.1|	-	7.4e-06	26.4	0.6	7.4e-06	26.4	0.6	2.1	2	0	0	2	2	2	1	Iron-sulfur	cluster-binding	domain
Glyco_transf_11	PF01531.16	gi|410669372|ref|YP_006921743.1|	-	0.041	13.1	0.2	0.11	11.7	0.1	1.7	2	0	0	2	2	2	0	Glycosyl	transferase	family	11
Glycos_transf_2	PF00535.26	gi|410669373|ref|YP_006921744.1|	-	4.2e-29	101.5	0.1	6.5e-29	100.9	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|410669373|ref|YP_006921744.1|	-	1e-21	77.9	0.0	1.3e-21	77.6	0.0	1.0	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|410669373|ref|YP_006921744.1|	-	2.4e-14	53.5	3.2	3.6e-10	39.8	0.4	2.1	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|410669373|ref|YP_006921744.1|	-	2.7e-08	33.9	0.0	3e-08	33.8	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_49	PF13896.6	gi|410669373|ref|YP_006921744.1|	-	0.052	12.9	0.0	0.08	12.3	0.0	1.4	1	0	0	1	1	1	0	Glycosyl-transferase	for	dystroglycan
Glyco_tranf_2_4	PF13704.6	gi|410669373|ref|YP_006921744.1|	-	0.091	13.3	0.1	0.17	12.4	0.1	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.6	gi|410669373|ref|YP_006921744.1|	-	0.22	11.0	0.0	0.49	9.8	0.0	1.6	1	1	0	1	1	1	0	Glycosyl	transferase	family	21
AAA_31	PF13614.6	gi|410669375|ref|YP_006921746.1|	-	9e-31	107.1	3.2	9.1e-31	107.1	0.6	2.3	2	0	0	2	2	2	1	AAA	domain
CbiA	PF01656.23	gi|410669375|ref|YP_006921746.1|	-	4.2e-14	52.7	0.1	9e-14	51.6	0.1	1.5	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|410669375|ref|YP_006921746.1|	-	6.4e-08	32.3	0.1	1e-05	25.1	0.0	2.4	2	1	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|410669375|ref|YP_006921746.1|	-	9.9e-07	28.3	0.2	0.006	15.9	0.1	2.3	2	0	0	2	2	2	2	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|410669375|ref|YP_006921746.1|	-	1.8e-05	24.4	0.0	5.4e-05	22.8	0.0	1.8	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
Fer4_NifH	PF00142.18	gi|410669375|ref|YP_006921746.1|	-	5.4e-05	22.8	0.5	0.00021	20.8	0.5	1.9	1	1	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ArsA_ATPase	PF02374.15	gi|410669375|ref|YP_006921746.1|	-	0.0034	16.6	0.0	0.0034	16.6	0.0	2.0	3	0	0	3	3	3	1	Anion-transporting	ATPase
AAA_17	PF13207.6	gi|410669375|ref|YP_006921746.1|	-	0.43	11.0	4.4	7.4	7.0	0.0	4.0	5	0	0	5	5	5	0	AAA	domain
VirC1	PF07015.11	gi|410669375|ref|YP_006921746.1|	-	5	6.3	5.3	20	4.4	0.1	3.0	4	0	0	4	4	4	0	VirC1	protein
Phage_integrase	PF00589.22	gi|410669376|ref|YP_006921747.1|	-	4.9e-15	55.7	0.2	5.2e-14	52.4	0.0	2.5	3	0	0	3	3	3	1	Phage	integrase	family
Phage_integr_3	PF16795.5	gi|410669376|ref|YP_006921747.1|	-	7e-06	26.0	0.3	5.9e-05	23.0	0.1	2.3	2	0	0	2	2	2	1	Archaeal	phage	integrase
Myb_DNA-bind_7	PF15963.5	gi|410669376|ref|YP_006921747.1|	-	0.031	14.1	0.2	0.11	12.4	0.1	2.0	1	1	0	1	1	1	0	Myb	DNA-binding	like
Cas_Cas1	PF01867.16	gi|410669380|ref|YP_006921751.1|	-	2.4e-72	243.5	0.0	2.9e-72	243.2	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
Csd3_N	PF18059.1	gi|410669381|ref|YP_006921752.1|	-	2.3	8.8	6.4	2.7	8.6	0.9	2.8	2	1	1	3	3	3	0	Csd3	N-terminal
DnaB_2	PF07261.11	gi|410669382|ref|YP_006921753.1|	-	0.025	14.3	0.0	0.025	14.3	0.0	1.1	1	0	0	1	1	1	0	Replication	initiation	and	membrane	attachment
RHH_1	PF01402.21	gi|410669382|ref|YP_006921753.1|	-	0.075	13.0	0.0	0.087	12.8	0.0	1.1	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
RRM_3	PF08777.11	gi|410669383|ref|YP_006921754.1|	-	0.059	13.4	2.0	0.71	9.9	0.2	2.7	1	1	1	2	2	2	0	RNA	binding	motif
DUF5065	PF16723.5	gi|410669383|ref|YP_006921754.1|	-	0.34	10.9	2.4	0.48	10.5	0.5	2.0	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF5065)
DNA_pol_B	PF00136.21	gi|410669385|ref|YP_006921756.1|	-	2.2e-05	23.3	2.9	0.026	13.3	0.6	3.0	2	2	1	3	3	3	2	DNA	polymerase	family	B
Mob_Pre	PF01076.19	gi|410669385|ref|YP_006921756.1|	-	0.015	15.1	0.3	0.015	15.1	0.3	1.8	2	0	0	2	2	2	0	Plasmid	recombination	enzyme
DUF3839	PF12943.7	gi|410669385|ref|YP_006921756.1|	-	0.021	14.3	0.9	0.88	9.0	0.0	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3839)
DNApol_Exo	PF18136.1	gi|410669385|ref|YP_006921756.1|	-	0.065	12.4	0.1	0.58	9.3	0.1	2.4	3	0	0	3	3	3	0	DNA	mitochondrial	polymerase	exonuclease	domain
bPH_3	PF14470.6	gi|410669387|ref|YP_006921758.1|	-	6e-08	32.9	0.8	2e-07	31.3	0.1	2.0	2	0	0	2	2	2	1	Bacterial	PH	domain
SHOCT	PF09851.9	gi|410669387|ref|YP_006921758.1|	-	9.6e-08	31.5	1.0	1.8e-07	30.7	1.0	1.5	1	0	0	1	1	1	1	Short	C-terminal	domain
bPH_1	PF08000.11	gi|410669387|ref|YP_006921758.1|	-	0.0037	17.3	0.0	0.011	15.9	0.0	1.9	1	1	0	1	1	1	1	Bacterial	PH	domain
HNH	PF01844.23	gi|410669388|ref|YP_006921759.1|	-	8.5e-10	38.7	5.8	1.5e-09	37.8	5.8	1.4	1	0	0	1	1	1	1	HNH	endonuclease
HNH_2	PF13391.6	gi|410669388|ref|YP_006921759.1|	-	2.1e-05	24.6	1.1	8.8e-05	22.6	1.1	2.0	1	1	0	1	1	1	1	HNH	endonuclease
HNH_5	PF14279.6	gi|410669388|ref|YP_006921759.1|	-	0.0012	18.6	3.1	0.0023	17.7	3.1	1.4	1	0	0	1	1	1	1	HNH	endonuclease
HNH_4	PF13395.6	gi|410669388|ref|YP_006921759.1|	-	0.015	15.2	0.2	0.036	14.0	0.2	1.6	1	0	0	1	1	1	0	HNH	endonuclease
GTA_TIM	PF13547.6	gi|410669388|ref|YP_006921759.1|	-	0.021	14.2	0.1	0.062	12.6	0.0	1.7	2	0	0	2	2	2	0	GTA	TIM-barrel-like	domain
Tox-GHH	PF15636.6	gi|410669388|ref|YP_006921759.1|	-	0.029	14.3	0.1	0.084	12.9	0.0	1.8	2	0	0	2	2	2	0	GHH	signature	containing	HNH/Endo	VII	superfamily	nuclease	toxin
zf-RRPl_C4	PF17026.5	gi|410669388|ref|YP_006921759.1|	-	0.1	12.7	0.4	0.1	12.7	0.4	2.0	2	1	0	2	2	2	0	Putative	ribonucleoprotein	zinc-finger	pf	C4	type
Endonuclease_7	PF02945.15	gi|410669388|ref|YP_006921759.1|	-	0.15	12.0	1.7	0.48	10.4	1.7	1.9	1	1	0	1	1	1	0	Recombination	endonuclease	VII
Cytochrome_C7	PF14522.6	gi|410669388|ref|YP_006921759.1|	-	0.19	11.7	3.6	0.32	11.0	2.9	1.7	1	1	0	1	1	1	0	Cytochrome	c7	and	related	cytochrome	c
Cytochrom_NNT	PF03264.14	gi|410669388|ref|YP_006921759.1|	-	0.31	10.7	4.5	0.53	10.0	4.5	1.3	1	0	0	1	1	1	0	NapC/NirT	cytochrome	c	family,	N-terminal	region
Post_transc_reg	PF13797.6	gi|410669389|ref|YP_006921760.1|	-	0.045	13.6	0.1	0.11	12.3	0.1	1.8	1	1	0	1	1	1	0	Post-transcriptional	regulator
NAPRTase_N	PF17767.1	gi|410669389|ref|YP_006921760.1|	-	0.087	13.2	0.2	0.11	12.9	0.2	1.3	1	0	0	1	1	1	0	Nicotinate	phosphoribosyltransferase	(NAPRTase)	N-terminal	domain
PRRSV_2b	PF07069.11	gi|410669391|ref|YP_006921762.1|	-	3.5	8.2	8.8	1.1	9.9	5.9	1.6	2	0	0	2	2	2	0	Porcine	reproductive	and	respiratory	syndrome	virus	2b
DUF2897	PF11446.8	gi|410669391|ref|YP_006921762.1|	-	9.4	6.2	8.0	21	5.1	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2897)
Goodbye	PF17109.5	gi|410669392|ref|YP_006921763.1|	-	0.0089	16.5	0.4	0.015	15.7	0.4	1.4	1	0	0	1	1	1	1	fungal	STAND	N-terminal	Goodbye	domain
DUF2312	PF10073.9	gi|410669392|ref|YP_006921763.1|	-	0.099	12.3	0.2	0.3	10.8	0.2	1.8	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
Cas_Cas1	PF01867.16	gi|410669394|ref|YP_006921765.1|	-	6.3e-76	255.2	0.0	8.6e-76	254.8	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
Ish1	PF10281.9	gi|410669395|ref|YP_006921766.1|	-	0.025	14.9	0.2	0.11	12.9	0.0	2.2	2	0	0	2	2	2	0	Putative	stress-responsive	nuclear	envelope	protein
HTH_5	PF01022.20	gi|410669395|ref|YP_006921766.1|	-	0.044	13.7	0.1	0.58	10.1	0.0	2.5	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|410669395|ref|YP_006921766.1|	-	0.064	13.2	0.0	0.2	11.6	0.0	1.8	1	0	0	1	1	1	0	HTH	domain
DnaGprimase_HBD	PF16730.5	gi|410669396|ref|YP_006921767.1|	-	0.051	13.7	0.0	0.051	13.7	0.0	1.0	1	0	0	1	1	1	0	DnaG-primase	C-terminal,	helicase-binding	domain
MNR	PF15718.5	gi|410669397|ref|YP_006921768.1|	-	0.046	11.9	1.9	0.055	11.6	1.9	1.0	1	0	0	1	1	1	0	Protein	moonraker
Thioredoxin_13	PF18401.1	gi|410669397|ref|YP_006921768.1|	-	0.053	13.4	0.1	0.1	12.5	0.1	1.6	1	1	0	1	1	1	0	Thioredoxin-like	domain
DUF5484	PF17583.2	gi|410669397|ref|YP_006921768.1|	-	0.11	12.1	0.4	0.82	9.4	0.1	2.3	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5484)
CbtA_toxin	PF06755.12	gi|410669397|ref|YP_006921768.1|	-	0.16	12.0	0.0	0.3	11.1	0.0	1.4	1	0	0	1	1	1	0	CbtA_toxin	of	type	IV	toxin-antitoxin	system
DNA_pol_B	PF00136.21	gi|410669398|ref|YP_006921769.1|	-	1.7e-07	30.3	0.1	0.0011	17.8	0.2	3.0	3	0	0	3	3	3	3	DNA	polymerase	family	B
Exo_endo_phos_2	PF14529.6	gi|410669399|ref|YP_006921770.1|	-	0.00012	21.9	4.1	0.0003	20.6	4.1	1.7	1	1	0	1	1	1	1	Endonuclease-reverse	transcriptase
Exo_endo_phos	PF03372.23	gi|410669399|ref|YP_006921770.1|	-	0.0038	16.8	0.0	0.006	16.1	0.0	1.4	1	1	0	1	1	1	1	Endonuclease/Exonuclease/phosphatase	family
DUF4357	PF14267.6	gi|410669400|ref|YP_006921771.1|	-	5.3e-22	77.5	0.1	1.1e-21	76.6	0.1	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4357)
RAMA	PF18755.1	gi|410669400|ref|YP_006921771.1|	-	6.5e-05	23.3	0.0	0.00012	22.5	0.0	1.5	1	0	0	1	1	1	1	Restriction	Enzyme	Adenine	Methylase	Associated
GIY-YIG	PF01541.24	gi|410669400|ref|YP_006921771.1|	-	0.00076	19.7	0.1	0.0016	18.6	0.1	1.6	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
UDG	PF03167.19	gi|410669401|ref|YP_006921772.1|	-	1.8e-12	47.5	0.0	2.9e-12	46.8	0.0	1.3	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
OGFr_N	PF04664.13	gi|410669402|ref|YP_006921773.1|	-	0.039	13.5	0.1	0.053	13.0	0.1	1.1	1	0	0	1	1	1	0	Opioid	growth	factor	receptor	(OGFr)	conserved	region
Pox_polyA_pol_C	PF12629.7	gi|410669402|ref|YP_006921773.1|	-	0.072	12.9	0.0	0.098	12.5	0.0	1.1	1	0	0	1	1	1	0	Poxvirus	poly(A)	polymerase	C-terminal	domain
Exo_endo_phos_2	PF14529.6	gi|410669403|ref|YP_006921774.1|	-	0.00012	21.9	4.1	0.0003	20.6	4.1	1.7	1	1	0	1	1	1	1	Endonuclease-reverse	transcriptase
Exo_endo_phos	PF03372.23	gi|410669403|ref|YP_006921774.1|	-	0.0038	16.8	0.0	0.006	16.1	0.0	1.4	1	1	0	1	1	1	1	Endonuclease/Exonuclease/phosphatase	family
DUF4357	PF14267.6	gi|410669404|ref|YP_006921775.1|	-	1.2e-21	76.3	0.1	2.4e-21	75.4	0.1	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4357)
RAMA	PF18755.1	gi|410669404|ref|YP_006921775.1|	-	6.6e-05	23.3	0.0	0.00011	22.6	0.0	1.4	1	0	0	1	1	1	1	Restriction	Enzyme	Adenine	Methylase	Associated
GIY-YIG	PF01541.24	gi|410669404|ref|YP_006921775.1|	-	0.00073	19.8	0.1	0.0016	18.7	0.1	1.6	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
HypA	PF01155.19	gi|410669405|ref|YP_006921776.1|	-	0.01	15.8	0.8	0.022	14.8	0.8	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
RRF	PF01765.19	gi|410669405|ref|YP_006921776.1|	-	0.011	15.7	0.6	0.011	15.7	0.6	1.8	2	0	0	2	2	2	0	Ribosome	recycling	factor
RNA_POL_M_15KD	PF02150.16	gi|410669405|ref|YP_006921776.1|	-	0.019	14.8	1.1	0.2	11.6	0.1	2.4	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
NOB1_Zn_bind	PF08772.11	gi|410669405|ref|YP_006921776.1|	-	0.043	14.0	1.2	0.079	13.1	0.3	1.9	2	0	0	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf_UBZ	PF18439.1	gi|410669405|ref|YP_006921776.1|	-	0.046	13.3	2.5	0.77	9.4	0.4	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
DZR	PF12773.7	gi|410669405|ref|YP_006921776.1|	-	0.064	13.3	0.3	0.14	12.2	0.3	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
DUF4471	PF14740.6	gi|410669405|ref|YP_006921776.1|	-	0.076	12.2	2.3	0.1	11.8	2.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4471)
C1_1	PF00130.22	gi|410669405|ref|YP_006921776.1|	-	0.18	11.7	1.5	0.55	10.1	1.4	1.8	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Lactamase_B_2	PF12706.7	gi|410669406|ref|YP_006921777.1|	-	4.4e-18	65.5	0.1	5.2e-18	65.3	0.1	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|410669406|ref|YP_006921777.1|	-	1.1e-14	54.9	0.7	1.6e-14	54.4	0.7	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
DJ-1_PfpI	PF01965.24	gi|410669407|ref|YP_006921778.1|	-	1.5e-45	155.0	0.5	1.7e-45	154.8	0.5	1.0	1	0	0	1	1	1	1	DJ-1/PfpI	family
Catalase_C	PF18011.1	gi|410669407|ref|YP_006921778.1|	-	1.3e-05	24.9	0.0	2e-05	24.3	0.0	1.4	1	0	0	1	1	1	1	C-terminal	domain	found	in	long	catalases
ThiJ_like	PF17124.5	gi|410669407|ref|YP_006921778.1|	-	0.0016	18.2	0.0	0.0059	16.3	0.0	1.8	1	1	0	1	1	1	1	ThiJ/PfpI	family-like
Exonuc_VII_L	PF02601.15	gi|410669407|ref|YP_006921778.1|	-	0.07	12.7	0.0	0.11	12.1	0.0	1.3	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
HAD	PF12710.7	gi|410669407|ref|YP_006921778.1|	-	0.078	13.4	0.1	0.67	10.3	0.0	1.9	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
GATase_3	PF07685.14	gi|410669407|ref|YP_006921778.1|	-	0.17	11.5	0.0	0.23	11.1	0.0	1.2	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
HAMP_N3	PF18575.1	gi|410669408|ref|YP_006921779.1|	-	9.7e-25	85.9	0.2	4.9e-24	83.6	0.2	2.4	1	0	0	1	1	1	1	HAMP	N-terminal	domain	3
PAS_4	PF08448.10	gi|410669408|ref|YP_006921779.1|	-	1.2e-13	51.3	0.0	2.2e-13	50.4	0.0	1.5	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|410669408|ref|YP_006921779.1|	-	8.1e-08	32.5	0.0	1.9e-07	31.3	0.0	1.7	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|410669408|ref|YP_006921779.1|	-	7e-06	26.0	0.0	1.4e-05	25.1	0.0	1.5	1	0	0	1	1	1	1	PAS	fold
HAMP	PF00672.25	gi|410669408|ref|YP_006921779.1|	-	6.3e-05	23.3	2.0	0.07	13.5	0.0	5.2	5	1	1	6	6	5	1	HAMP	domain
DUF438	PF04282.13	gi|410669408|ref|YP_006921779.1|	-	0.024	14.6	0.5	19	5.3	0.0	3.9	3	1	1	4	4	4	0	Family	of	unknown	function	(DUF438)
DEK_C	PF08766.11	gi|410669408|ref|YP_006921779.1|	-	0.032	14.2	2.8	8.7	6.4	0.0	3.6	4	0	0	4	4	4	0	DEK	C	terminal	domain
HisKA_3	PF07730.13	gi|410669408|ref|YP_006921779.1|	-	0.045	14.3	0.1	1.3	9.6	0.3	3.2	4	0	0	4	4	4	0	Histidine	kinase
RecG_N	PF17190.4	gi|410669408|ref|YP_006921779.1|	-	0.1	13.3	1.0	49	4.7	0.0	3.7	3	1	0	3	3	3	0	RecG	N-terminal	helical	domain
SHE3	PF17078.5	gi|410669408|ref|YP_006921779.1|	-	0.1	12.3	1.4	9.8	5.8	0.1	2.5	2	0	0	2	2	2	0	SWI5-dependent	HO	expression	protein	3
CorA	PF01544.18	gi|410669408|ref|YP_006921779.1|	-	0.84	8.9	4.3	2.2	7.5	0.1	2.8	3	0	0	3	3	3	0	CorA-like	Mg2+	transporter	protein
CENP-F_leu_zip	PF10473.9	gi|410669408|ref|YP_006921779.1|	-	1.5	8.9	5.9	2.5	8.1	1.9	2.6	3	0	0	3	3	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF4164	PF13747.6	gi|410669408|ref|YP_006921779.1|	-	4.5	7.6	10.0	36	4.7	1.2	4.8	5	1	0	5	5	5	0	Domain	of	unknown	function	(DUF4164)
MCPsignal	PF00015.21	gi|410669409|ref|YP_006921780.1|	-	3.8e-50	170.1	51.7	1e-47	162.2	20.2	5.2	2	1	4	6	6	6	4	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|410669409|ref|YP_006921780.1|	-	4.4e-06	27.0	0.4	0.009	16.4	0.0	5.9	6	1	1	7	7	7	1	HAMP	domain
DUF1664	PF07889.12	gi|410669409|ref|YP_006921780.1|	-	0.00013	22.0	27.4	0.00082	19.4	4.6	4.8	2	2	2	4	4	4	2	Protein	of	unknown	function	(DUF1664)
DUF948	PF06103.11	gi|410669409|ref|YP_006921780.1|	-	0.01	16.1	32.0	0.042	14.1	3.7	6.9	4	2	2	6	6	6	0	Bacterial	protein	of	unknown	function	(DUF948)
Med30	PF11315.8	gi|410669409|ref|YP_006921780.1|	-	0.041	14.1	10.7	0.077	13.2	4.0	3.5	3	1	0	3	3	3	0	Mediator	complex	subunit	30
PHA_synth_III_E	PF09712.10	gi|410669409|ref|YP_006921780.1|	-	0.085	11.9	5.9	2.4	7.2	1.1	2.5	2	0	0	2	2	2	0	Poly(R)-hydroxyalkanoic	acid	synthase	subunit	(PHA_synth_III_E)
AIP3	PF03915.13	gi|410669409|ref|YP_006921780.1|	-	0.088	11.9	27.1	0.075	12.1	10.4	2.4	2	1	0	2	2	2	0	Actin	interacting	protein	3
T7SS_ESX_EspC	PF10824.8	gi|410669409|ref|YP_006921780.1|	-	0.42	11.1	26.9	1.1	9.7	0.2	4.8	2	1	1	4	4	4	0	Excreted	virulence	factor	EspC,	type	VII	ESX	diderm
BLOC1_2	PF10046.9	gi|410669409|ref|YP_006921780.1|	-	0.98	9.8	23.5	4.1	7.8	2.3	5.3	2	2	3	5	5	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
P4Ha_N	PF08336.11	gi|410669409|ref|YP_006921780.1|	-	1.6	8.7	5.7	20	5.2	0.4	3.3	2	2	0	2	2	2	0	Prolyl	4-Hydroxylase	alpha-subunit,	N-terminal	region
H-kinase_dim	PF02895.14	gi|410669409|ref|YP_006921780.1|	-	2.4	8.6	15.4	12	6.4	5.5	4.9	2	2	0	2	2	2	0	Signal	transducing	histidine	kinase,	homodimeric	domain
APG6_N	PF17675.1	gi|410669409|ref|YP_006921780.1|	-	2.7	8.5	12.9	1.2	9.7	1.3	2.7	2	1	0	2	2	2	0	Apg6	coiled-coil	region
YkyA	PF10368.9	gi|410669409|ref|YP_006921780.1|	-	2.9	7.5	24.8	0.2	11.3	5.1	3.5	2	1	1	3	3	3	0	Putative	cell-wall	binding	lipoprotein
Serine_rich	PF08824.10	gi|410669409|ref|YP_006921780.1|	-	3.2	7.7	12.1	1.5	8.8	2.9	3.2	2	1	0	2	2	2	0	Serine	rich	protein	interaction	domain
Sulfatase_C	PF14707.6	gi|410669409|ref|YP_006921780.1|	-	3.7	8.3	5.0	36	5.1	0.4	3.2	2	1	0	2	2	2	0	C-terminal	region	of	aryl-sulfatase
Spc7	PF08317.11	gi|410669409|ref|YP_006921780.1|	-	3.8	6.3	26.2	4.6	6.0	11.5	2.6	1	1	0	2	2	2	0	Spc7	kinetochore	protein
WXG100	PF06013.12	gi|410669409|ref|YP_006921780.1|	-	8.9	6.6	23.7	11	6.3	5.7	5.4	4	2	0	4	4	4	0	Proteins	of	100	residues	with	WXG
TIR_2	PF13676.6	gi|410669413|ref|YP_006921784.1|	-	2e-09	38.1	0.0	3.2e-09	37.4	0.0	1.3	1	0	0	1	1	1	1	TIR	domain
CpXC	PF14353.6	gi|410669413|ref|YP_006921784.1|	-	0.012	15.6	1.5	0.055	13.5	1.7	2.0	1	1	1	2	2	2	0	CpXC	protein
zf-ribbon_3	PF13248.6	gi|410669413|ref|YP_006921784.1|	-	0.037	13.5	1.6	1.7	8.2	0.2	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Cys_rich_CPXG	PF14255.6	gi|410669413|ref|YP_006921784.1|	-	0.037	13.9	2.2	0.062	13.2	0.3	2.2	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
zf-C4pol	PF14260.6	gi|410669413|ref|YP_006921784.1|	-	0.043	14.3	0.1	0.1	13.1	0.1	1.6	1	0	0	1	1	1	0	C4-type	zinc-finger	of	DNA	polymerase	delta
zf-BED	PF02892.15	gi|410669413|ref|YP_006921784.1|	-	0.11	12.6	2.2	7.9	6.6	0.5	2.3	1	1	1	2	2	2	0	BED	zinc	finger
DZR	PF12773.7	gi|410669413|ref|YP_006921784.1|	-	0.12	12.4	0.5	0.33	11.0	0.5	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
Ribosomal_S27e	PF01667.17	gi|410669413|ref|YP_006921784.1|	-	0.14	11.9	0.1	0.26	11.0	0.1	1.5	1	1	0	1	1	1	0	Ribosomal	protein	S27
DUF1863	PF08937.11	gi|410669413|ref|YP_006921784.1|	-	0.15	12.4	0.0	0.6	10.4	0.0	1.8	1	1	0	1	1	1	0	MTH538	TIR-like	domain	(DUF1863)
PyrI_C	PF02748.15	gi|410669413|ref|YP_006921784.1|	-	0.23	11.4	2.1	4.5	7.3	0.3	2.4	1	1	1	2	2	2	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
MarR_2	PF12802.7	gi|410669414|ref|YP_006921785.1|	-	0.00021	21.1	0.0	0.00024	20.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|410669414|ref|YP_006921785.1|	-	0.00028	20.4	0.0	0.00043	19.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_34	PF13601.6	gi|410669414|ref|YP_006921785.1|	-	0.00032	20.8	0.1	0.00046	20.3	0.1	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Replic_Relax	PF13814.6	gi|410669414|ref|YP_006921785.1|	-	0.00032	20.8	0.0	0.00038	20.6	0.0	1.1	1	0	0	1	1	1	1	Replication-relaxation
HTH_27	PF13463.6	gi|410669414|ref|YP_006921785.1|	-	0.00035	21.0	0.1	0.0005	20.5	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|410669414|ref|YP_006921785.1|	-	0.0007	19.5	0.1	0.00092	19.1	0.1	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
MarR	PF01047.22	gi|410669414|ref|YP_006921785.1|	-	0.00082	19.2	0.0	0.0012	18.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
DUF2250	PF10007.9	gi|410669414|ref|YP_006921785.1|	-	0.00097	19.2	0.1	0.0014	18.7	0.1	1.3	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
TrmB	PF01978.19	gi|410669414|ref|YP_006921785.1|	-	0.001	18.9	0.0	0.0013	18.6	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
FeoC	PF09012.10	gi|410669414|ref|YP_006921785.1|	-	0.0016	18.4	0.0	0.0025	17.9	0.0	1.2	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
HTH_Crp_2	PF13545.6	gi|410669414|ref|YP_006921785.1|	-	0.0028	17.6	0.1	0.0041	17.1	0.1	1.4	1	1	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_36	PF13730.6	gi|410669414|ref|YP_006921785.1|	-	0.006	16.5	0.0	0.011	15.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Dimerisation2	PF16864.5	gi|410669414|ref|YP_006921785.1|	-	0.0096	15.9	0.0	0.012	15.6	0.0	1.1	1	0	0	1	1	1	1	Dimerisation	domain
Phage_rep_org_N	PF09681.10	gi|410669414|ref|YP_006921785.1|	-	0.011	15.6	0.0	0.013	15.4	0.0	1.2	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
DUF1670	PF07900.11	gi|410669414|ref|YP_006921785.1|	-	0.012	15.0	0.0	0.013	14.9	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1670)
HTH_5	PF01022.20	gi|410669414|ref|YP_006921785.1|	-	0.015	15.2	0.0	0.022	14.6	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.6	gi|410669414|ref|YP_006921785.1|	-	0.023	14.8	0.0	0.036	14.2	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF1495	PF07381.11	gi|410669414|ref|YP_006921785.1|	-	0.027	14.3	0.1	0.36	10.7	0.1	2.0	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_IclR	PF09339.10	gi|410669414|ref|YP_006921785.1|	-	0.029	14.2	0.0	0.043	13.6	0.0	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_29	PF13551.6	gi|410669414|ref|YP_006921785.1|	-	0.035	14.1	0.0	0.048	13.7	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
DUF505	PF04458.12	gi|410669414|ref|YP_006921785.1|	-	0.037	12.4	0.1	0.04	12.3	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
HTH_20	PF12840.7	gi|410669414|ref|YP_006921785.1|	-	0.04	14.0	0.0	0.048	13.7	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|410669414|ref|YP_006921785.1|	-	0.046	13.6	0.2	0.055	13.3	0.2	1.1	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_38	PF13936.6	gi|410669414|ref|YP_006921785.1|	-	0.07	12.9	0.4	0.5	10.2	0.2	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|410669414|ref|YP_006921785.1|	-	0.088	12.8	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
Fe_dep_repress	PF01325.19	gi|410669414|ref|YP_006921785.1|	-	0.088	13.0	0.0	0.13	12.5	0.0	1.2	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Hexapep	PF00132.24	gi|410669415|ref|YP_006921786.1|	-	1.1e-16	59.8	22.0	6.6e-06	25.6	0.3	4.4	4	1	0	4	4	4	4	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|410669415|ref|YP_006921786.1|	-	4.5e-07	29.5	16.2	2.2e-05	24.1	2.7	3.0	3	0	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
Fucokinase	PF07959.12	gi|410669415|ref|YP_006921786.1|	-	0.0064	15.5	3.8	0.16	10.8	0.7	2.1	1	1	1	2	2	2	2	L-fucokinase
DUF188	PF02639.14	gi|410669415|ref|YP_006921786.1|	-	0.015	14.9	0.1	0.026	14.2	0.1	1.3	1	0	0	1	1	1	0	Uncharacterized	BCR,	YaiI/YqxD	family	COG1671
DUF4954	PF16314.5	gi|410669415|ref|YP_006921786.1|	-	0.057	11.5	4.3	0.085	11.0	4.3	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4954)
PMSR	PF01625.21	gi|410669416|ref|YP_006921787.1|	-	2.5e-53	180.4	0.7	3.3e-53	180.0	0.7	1.1	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
PAS_4	PF08448.10	gi|410669418|ref|YP_006921789.1|	-	6.3e-43	145.5	0.0	2.2e-18	66.5	0.0	5.1	4	1	0	4	4	4	3	PAS	fold
PAS_9	PF13426.7	gi|410669418|ref|YP_006921789.1|	-	2.1e-41	140.4	0.0	7.8e-13	48.6	0.0	4.6	4	0	0	4	4	4	4	PAS	domain
PAS	PF00989.25	gi|410669418|ref|YP_006921789.1|	-	2.6e-38	130.5	0.0	8e-15	54.8	0.0	4.9	4	1	0	4	4	4	3	PAS	fold
HATPase_c	PF02518.26	gi|410669418|ref|YP_006921789.1|	-	1.3e-30	106.1	0.0	3.2e-30	104.9	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|410669418|ref|YP_006921789.1|	-	3.7e-21	74.9	0.4	9.1e-20	70.5	0.1	2.8	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.7	gi|410669418|ref|YP_006921789.1|	-	5.3e-20	71.0	0.0	2.8e-06	27.2	0.0	4.5	4	0	0	4	4	4	4	PAS	domain
PAS_3	PF08447.12	gi|410669418|ref|YP_006921789.1|	-	2.8e-14	53.1	0.0	0.00012	22.3	0.0	4.0	3	0	0	3	3	3	3	PAS	fold
PAS_7	PF12860.7	gi|410669418|ref|YP_006921789.1|	-	0.0012	19.0	0.0	5.2	7.3	0.0	3.5	3	1	0	3	3	3	1	PAS	fold
PAS_10	PF13596.6	gi|410669418|ref|YP_006921789.1|	-	0.002	18.7	0.0	0.25	11.9	0.0	3.5	3	0	0	3	3	3	1	PAS	domain
HATPase_c_3	PF13589.6	gi|410669418|ref|YP_006921789.1|	-	0.0078	16.0	0.2	0.024	14.5	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.6	gi|410669418|ref|YP_006921789.1|	-	0.012	15.5	0.0	0.033	14.1	0.0	1.8	1	0	0	1	1	1	0	GHKL	domain
VPS11_C	PF12451.8	gi|410669418|ref|YP_006921789.1|	-	0.037	14.3	2.7	12	6.2	0.3	3.5	3	0	0	3	3	3	0	Vacuolar	protein	sorting	protein	11	C	terminal
NifU_N	PF01592.16	gi|410669419|ref|YP_006921790.1|	-	1.9e-42	144.4	0.0	3.2e-42	143.7	0.0	1.3	1	0	0	1	1	1	1	NifU-like	N	terminal	domain
FeS_assembly_P	PF01883.19	gi|410669419|ref|YP_006921790.1|	-	1.7e-13	50.5	1.6	4.4e-13	49.2	0.7	2.1	2	1	1	3	3	3	1	Iron-sulfur	cluster	assembly	protein
Aminotran_5	PF00266.19	gi|410669420|ref|YP_006921791.1|	-	1.1e-73	248.3	0.2	1.4e-73	248.0	0.2	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|410669420|ref|YP_006921791.1|	-	1.5e-06	27.8	0.1	2.3e-06	27.2	0.1	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|410669420|ref|YP_006921791.1|	-	1.6e-06	27.6	0.1	2.2e-06	27.2	0.1	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.20	gi|410669420|ref|YP_006921791.1|	-	3.4e-05	22.6	0.5	5.6e-05	21.8	0.5	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.21	gi|410669420|ref|YP_006921791.1|	-	0.00053	19.3	0.0	0.00077	18.7	0.0	1.4	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
SepSecS	PF05889.13	gi|410669420|ref|YP_006921791.1|	-	0.081	11.6	0.1	0.13	10.9	0.1	1.4	1	0	0	1	1	1	0	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
Pyridoxal_deC	PF00282.19	gi|410669420|ref|YP_006921791.1|	-	0.16	10.7	0.1	0.31	9.7	0.1	1.5	1	0	0	1	1	1	0	Pyridoxal-dependent	decarboxylase	conserved	domain
DrsE_2	PF13686.6	gi|410669421|ref|YP_006921792.1|	-	2.2e-35	121.8	0.3	2.1e-20	73.2	0.1	2.0	1	1	1	2	2	2	2	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.15	gi|410669421|ref|YP_006921792.1|	-	1.4e-05	25.4	0.0	2.1e-05	24.9	0.0	1.3	1	1	0	1	1	1	1	DsrE/DsrF-like	family
TusA	PF01206.17	gi|410669422|ref|YP_006921793.1|	-	1.7e-22	79.0	0.2	1.8e-22	78.9	0.2	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.9	gi|410669422|ref|YP_006921793.1|	-	0.028	14.3	0.0	0.72	9.8	0.0	2.0	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2249)
Arteri_nsp7a	PF16749.5	gi|410669422|ref|YP_006921793.1|	-	0.2	11.8	0.0	0.23	11.6	0.0	1.2	1	0	0	1	1	1	0	Arterivirus	nonstructural	protein	7	alpha
Metalloenzyme	PF01676.18	gi|410669423|ref|YP_006921794.1|	-	1e-08	34.9	0.1	2.6e-08	33.6	0.0	1.7	2	0	0	2	2	2	1	Metalloenzyme	superfamily
Sulfatase	PF00884.23	gi|410669423|ref|YP_006921794.1|	-	4.5e-06	26.3	0.0	9.2e-06	25.3	0.0	1.4	1	1	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|410669423|ref|YP_006921794.1|	-	1.5e-05	24.8	0.3	3.8e-05	23.4	0.0	1.8	3	0	0	3	3	3	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
MFS_1	PF07690.16	gi|410669424|ref|YP_006921795.1|	-	1.3e-37	129.6	51.9	4.4e-27	94.9	19.4	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
SLATT_1	PF18181.1	gi|410669424|ref|YP_006921795.1|	-	1.3	9.0	3.0	43	4.1	0.0	2.8	2	1	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	1
DDE_Tnp_1	PF01609.21	gi|410669425|ref|YP_006921796.1|	-	3.4e-09	36.6	6.1	9.6e-09	35.2	6.1	1.7	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|410669426|ref|YP_006921797.1|	-	0.00012	22.3	0.6	0.00013	22.2	0.6	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|410669426|ref|YP_006921797.1|	-	0.016	14.9	0.1	0.018	14.7	0.1	1.1	1	0	0	1	1	1	0	Transposase	DDE	domain
zf-C2H2_3	PF13878.6	gi|410669427|ref|YP_006921798.1|	-	0.14	12.0	0.9	5.7	6.9	0.1	2.3	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
DUF2551	PF10826.8	gi|410669428|ref|YP_006921799.1|	-	5e-19	68.3	1.1	5.5e-19	68.2	1.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2551)
DsbD_2	PF13386.6	gi|410669431|ref|YP_006921802.1|	-	3.4e-19	69.6	18.9	4.5e-19	69.2	18.9	1.2	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
Thioredoxin_4	PF13462.6	gi|410669432|ref|YP_006921803.1|	-	0.0026	17.9	0.0	0.0035	17.5	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
DUF1450	PF07293.11	gi|410669432|ref|YP_006921803.1|	-	0.058	13.2	0.1	0.094	12.5	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1450)
Ibs_toxin	PF13956.6	gi|410669432|ref|YP_006921803.1|	-	0.19	11.8	8.5	0.33	11.0	8.5	1.4	1	0	0	1	1	1	0	Toxin	Ibs,	type	I	toxin-antitoxin	system
Egg_lysin	PF01303.17	gi|410669433|ref|YP_006921804.1|	-	0.031	14.5	0.0	0.035	14.3	0.0	1.0	1	0	0	1	1	1	0	Egg	lysin	(Sperm-lysin)
DrsE	PF02635.15	gi|410669433|ref|YP_006921804.1|	-	0.058	13.8	0.0	0.063	13.6	0.0	1.1	1	0	0	1	1	1	0	DsrE/DsrF-like	family
FeS	PF04060.13	gi|410669434|ref|YP_006921805.1|	-	3.3e-12	45.8	0.4	5.2e-12	45.2	0.4	1.3	1	0	0	1	1	1	1	Putative	Fe-S	cluster
HTH_20	PF12840.7	gi|410669434|ref|YP_006921805.1|	-	5.9e-07	29.4	0.5	1.7e-06	28.0	0.2	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|410669434|ref|YP_006921805.1|	-	0.00033	20.5	2.4	0.00042	20.1	0.1	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
ArsR	PF09824.9	gi|410669434|ref|YP_006921805.1|	-	0.016	14.8	0.1	0.35	10.5	0.0	2.1	2	0	0	2	2	2	0	ArsR	transcriptional	regulator
HTH_45	PF14947.6	gi|410669434|ref|YP_006921805.1|	-	0.03	14.3	0.1	0.074	13.0	0.1	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix
AAA_assoc_C	PF09821.9	gi|410669434|ref|YP_006921805.1|	-	0.042	14.4	0.2	4.9	7.7	0.1	2.6	2	1	0	2	2	2	0	C-terminal	AAA-associated	domain
CtsR_C	PF17727.1	gi|410669434|ref|YP_006921805.1|	-	0.35	11.0	2.6	0.4	10.8	0.2	2.3	2	1	0	2	2	2	0	CtsR	C-terminal	dimerization	domain
GntP_permease	PF02447.16	gi|410669435|ref|YP_006921806.1|	-	3.6e-47	161.1	30.6	4.8e-47	160.7	30.6	1.1	1	0	0	1	1	1	1	GntP	family	permease
CitMHS	PF03600.16	gi|410669435|ref|YP_006921806.1|	-	4.2e-05	22.9	35.2	4.2e-05	22.9	35.2	1.8	2	1	0	2	2	2	1	Citrate	transporter
DUF2852	PF11014.8	gi|410669435|ref|YP_006921806.1|	-	0.006	16.7	0.5	0.65	10.2	0.2	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2852)
DUF169	PF02596.15	gi|410669436|ref|YP_006921807.1|	-	9.4e-48	162.9	0.1	1.1e-47	162.7	0.1	1.0	1	0	0	1	1	1	1	Uncharacterised	ArCR,	COG2043
GTF2I	PF02946.14	gi|410669436|ref|YP_006921807.1|	-	0.0079	16.2	0.0	0.3	11.2	0.0	2.4	2	0	0	2	2	2	1	GTF2I-like	repeat
DUF4423	PF14394.6	gi|410669437|ref|YP_006921808.1|	-	0.0079	15.9	0.5	0.039	13.7	0.1	1.9	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4423)
DnaB_2	PF07261.11	gi|410669437|ref|YP_006921808.1|	-	0.051	13.3	0.0	7	6.5	0.0	2.5	1	1	1	2	2	2	0	Replication	initiation	and	membrane	attachment
HTH_24	PF13412.6	gi|410669437|ref|YP_006921808.1|	-	0.064	12.8	0.3	0.11	12.0	0.3	1.5	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF2202	PF09968.9	gi|410669437|ref|YP_006921808.1|	-	0.11	12.3	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	domain	(DUF2202)
ArsD	PF06953.11	gi|410669438|ref|YP_006921809.1|	-	8.7e-42	142.4	0.0	1e-41	142.2	0.0	1.0	1	0	0	1	1	1	1	Arsenical	resistance	operon	trans-acting	repressor	ArsD
YkuI_C	PF10388.9	gi|410669438|ref|YP_006921809.1|	-	0.021	14.6	0.0	0.024	14.5	0.0	1.1	1	0	0	1	1	1	0	EAL-domain	associated	signalling	protein	domain
Thioredoxin_3	PF13192.6	gi|410669438|ref|YP_006921809.1|	-	0.059	13.4	0.2	0.11	12.6	0.2	1.6	1	1	0	1	1	1	0	Thioredoxin	domain
AAA_25	PF13481.6	gi|410669439|ref|YP_006921810.1|	-	6.1e-07	29.2	0.0	6.8e-07	29.1	0.0	1.0	1	0	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.15	gi|410669439|ref|YP_006921810.1|	-	3.8e-05	23.0	2.0	7.1e-05	22.1	1.8	1.5	2	0	0	2	2	2	1	Anion-transporting	ATPase
NB-ARC	PF00931.22	gi|410669439|ref|YP_006921810.1|	-	0.00024	20.4	0.0	0.00031	20.0	0.0	1.1	1	0	0	1	1	1	1	NB-ARC	domain
AAA_16	PF13191.6	gi|410669439|ref|YP_006921810.1|	-	0.0013	19.1	0.0	0.0017	18.7	0.0	1.1	1	0	0	1	1	1	1	AAA	ATPase	domain
ParA	PF10609.9	gi|410669439|ref|YP_006921810.1|	-	0.0077	15.7	0.4	0.011	15.2	0.4	1.2	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|410669439|ref|YP_006921810.1|	-	0.0081	16.2	2.6	0.0091	16.1	1.8	1.4	2	0	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|410669439|ref|YP_006921810.1|	-	0.014	15.3	0.9	0.02	14.8	0.9	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|410669439|ref|YP_006921810.1|	-	0.016	15.0	0.0	0.018	14.8	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
PhoH	PF02562.16	gi|410669439|ref|YP_006921810.1|	-	0.023	14.1	0.0	0.029	13.8	0.0	1.1	1	0	0	1	1	1	0	PhoH-like	protein
PIF1	PF05970.14	gi|410669439|ref|YP_006921810.1|	-	0.036	13.2	0.0	0.041	13.1	0.0	1.1	1	0	0	1	1	1	0	PIF1-like	helicase
AAA	PF00004.29	gi|410669439|ref|YP_006921810.1|	-	0.086	13.3	2.2	0.26	11.7	1.0	1.9	1	1	1	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.6	gi|410669439|ref|YP_006921810.1|	-	0.16	12.5	0.1	0.23	11.9	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|410669439|ref|YP_006921810.1|	-	0.21	11.3	0.0	0.23	11.2	0.0	1.1	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
ArsA_ATPase	PF02374.15	gi|410669440|ref|YP_006921811.1|	-	2.1e-101	339.1	3.6	4.3e-61	206.7	0.1	4.1	2	2	1	3	3	3	3	Anion-transporting	ATPase
CbiA	PF01656.23	gi|410669440|ref|YP_006921811.1|	-	1.8e-21	76.6	0.2	1.2e-11	44.8	0.0	2.8	2	1	0	2	2	2	2	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|410669440|ref|YP_006921811.1|	-	2.1e-21	76.6	0.1	4.1e-11	43.1	0.0	2.8	2	1	0	2	2	2	2	AAA	domain
ParA	PF10609.9	gi|410669440|ref|YP_006921811.1|	-	7e-14	51.9	1.9	5.1e-05	22.9	0.0	3.6	4	0	0	4	4	4	2	NUBPL	iron-transfer	P-loop	NTPase
AAA_25	PF13481.6	gi|410669440|ref|YP_006921811.1|	-	3.3e-12	46.4	0.7	5.1e-08	32.7	0.1	2.6	2	1	0	2	2	2	2	AAA	domain
Fer4_NifH	PF00142.18	gi|410669440|ref|YP_006921811.1|	-	8.5e-11	41.8	0.0	0.00019	21.0	0.0	2.5	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
PhoH	PF02562.16	gi|410669440|ref|YP_006921811.1|	-	6.1e-10	38.9	0.5	2.9e-05	23.6	0.1	2.9	2	1	0	2	2	2	2	PhoH-like	protein
IstB_IS21	PF01695.17	gi|410669440|ref|YP_006921811.1|	-	3.5e-09	36.6	0.0	0.0011	18.8	0.0	2.5	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
MeaB	PF03308.16	gi|410669440|ref|YP_006921811.1|	-	7.1e-09	35.0	0.4	0.0026	16.8	0.1	2.3	2	0	0	2	2	2	2	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_16	PF13191.6	gi|410669440|ref|YP_006921811.1|	-	4.8e-08	33.6	0.0	0.00021	21.7	0.0	2.6	2	0	0	2	2	2	2	AAA	ATPase	domain
CBP_BcsQ	PF06564.12	gi|410669440|ref|YP_006921811.1|	-	6.6e-08	32.3	0.0	0.00041	19.9	0.0	3.1	4	0	0	4	4	3	2	Cellulose	biosynthesis	protein	BcsQ
AAA_30	PF13604.6	gi|410669440|ref|YP_006921811.1|	-	1.7e-07	31.2	0.2	0.00017	21.4	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
MipZ	PF09140.11	gi|410669440|ref|YP_006921811.1|	-	6.9e-06	25.5	3.1	0.013	14.9	1.0	3.1	3	1	0	3	3	3	2	ATPase	MipZ
SRP54	PF00448.22	gi|410669440|ref|YP_006921811.1|	-	8.8e-06	25.5	7.5	0.037	13.7	0.7	3.8	3	1	1	4	4	4	2	SRP54-type	protein,	GTPase	domain
APS_kinase	PF01583.20	gi|410669440|ref|YP_006921811.1|	-	1.1e-05	25.3	0.1	0.054	13.4	0.0	2.6	2	0	0	2	2	2	2	Adenylylsulphate	kinase
AAA	PF00004.29	gi|410669440|ref|YP_006921811.1|	-	1.2e-05	25.7	2.5	0.038	14.4	0.6	3.8	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.22	gi|410669440|ref|YP_006921811.1|	-	1.5e-05	24.4	0.1	0.0032	16.7	0.0	2.5	2	0	0	2	2	2	1	NB-ARC	domain
PIF1	PF05970.14	gi|410669440|ref|YP_006921811.1|	-	6.1e-05	22.4	0.0	0.067	12.3	0.0	2.4	2	0	0	2	2	2	2	PIF1-like	helicase
ATP_bind_1	PF03029.17	gi|410669440|ref|YP_006921811.1|	-	6.6e-05	22.8	0.3	0.046	13.5	0.0	2.6	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
AAA_18	PF13238.6	gi|410669440|ref|YP_006921811.1|	-	7.4e-05	23.3	0.2	0.19	12.3	0.0	3.8	3	1	0	3	3	3	1	AAA	domain
VirC1	PF07015.11	gi|410669440|ref|YP_006921811.1|	-	0.00029	20.2	1.2	0.33	10.2	0.1	2.5	2	1	0	2	2	2	2	VirC1	protein
Zeta_toxin	PF06414.12	gi|410669440|ref|YP_006921811.1|	-	0.00045	19.6	0.3	0.19	11.0	0.1	2.7	2	0	0	2	2	2	1	Zeta	toxin
AdoHcyase_NAD	PF00670.21	gi|410669440|ref|YP_006921811.1|	-	0.00087	19.4	0.1	0.54	10.3	0.0	2.5	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
RuvB_N	PF05496.12	gi|410669440|ref|YP_006921811.1|	-	0.00089	19.0	0.1	0.04	13.7	0.0	2.5	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_29	PF13555.6	gi|410669440|ref|YP_006921811.1|	-	0.0019	17.9	0.7	1.4	8.8	0.0	2.5	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
Helicase_RecD	PF05127.14	gi|410669440|ref|YP_006921811.1|	-	0.0039	17.1	0.3	2.5	7.9	0.1	3.1	3	0	0	3	3	3	1	Helicase
ABC_tran	PF00005.27	gi|410669440|ref|YP_006921811.1|	-	0.0077	16.8	1.4	0.42	11.1	0.0	3.1	2	2	0	2	2	2	1	ABC	transporter
YjeF_N	PF03853.15	gi|410669440|ref|YP_006921811.1|	-	0.0091	15.9	0.0	4.1	7.3	0.0	2.8	2	0	0	2	2	2	0	YjeF-related	protein	N-terminus
NTPase_1	PF03266.15	gi|410669440|ref|YP_006921811.1|	-	0.01	15.7	7.0	1.3	8.9	0.1	3.8	4	0	0	4	4	3	0	NTPase
AAA_2	PF07724.14	gi|410669440|ref|YP_006921811.1|	-	0.012	15.7	0.4	0.14	12.3	0.3	2.4	2	0	0	2	2	2	0	AAA	domain	(Cdc48	subfamily)
AAA_7	PF12775.7	gi|410669440|ref|YP_006921811.1|	-	0.018	14.6	0.1	2.8	7.4	0.0	2.4	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
CTP_synth_N	PF06418.14	gi|410669440|ref|YP_006921811.1|	-	0.018	14.4	0.8	8.5	5.6	0.1	3.2	3	0	0	3	3	3	0	CTP	synthase	N-terminus
AAA_24	PF13479.6	gi|410669440|ref|YP_006921811.1|	-	0.018	14.7	4.8	1.5	8.5	0.1	3.2	2	2	0	2	2	2	0	AAA	domain
MGS	PF02142.22	gi|410669440|ref|YP_006921811.1|	-	0.019	15.1	0.1	1.4	9.2	0.0	3.1	3	0	0	3	3	3	0	MGS-like	domain
NACHT	PF05729.12	gi|410669440|ref|YP_006921811.1|	-	0.029	14.3	4.0	5.2	6.9	0.0	3.4	5	0	0	5	5	2	0	NACHT	domain
AAA_5	PF07728.14	gi|410669440|ref|YP_006921811.1|	-	0.031	14.3	0.8	8.2	6.4	0.5	3.2	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
ResIII	PF04851.15	gi|410669440|ref|YP_006921811.1|	-	0.033	14.2	0.1	15	5.5	0.0	2.9	2	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
DUF2868	PF11067.8	gi|410669440|ref|YP_006921811.1|	-	0.039	13.5	0.2	0.12	11.8	0.1	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2868)
Glyco_transf_28	PF03033.20	gi|410669440|ref|YP_006921811.1|	-	0.044	13.8	0.0	4.5	7.3	0.0	2.5	2	0	0	2	2	2	0	Glycosyltransferase	family	28	N-terminal	domain
RsgA_GTPase	PF03193.16	gi|410669440|ref|YP_006921811.1|	-	0.055	13.4	1.3	3.8	7.4	0.0	2.8	3	0	0	3	3	2	0	RsgA	GTPase
NAD_binding_7	PF13241.6	gi|410669440|ref|YP_006921811.1|	-	0.099	13.1	0.7	7.8	7.0	0.0	3.0	3	0	0	3	3	3	0	Putative	NAD(P)-binding
DUF2075	PF09848.9	gi|410669440|ref|YP_006921811.1|	-	0.12	11.6	0.2	11	5.2	0.0	2.6	3	0	0	3	3	3	0	Uncharacterized	conserved	protein	(DUF2075)
DUF1611	PF07755.11	gi|410669440|ref|YP_006921811.1|	-	0.18	11.1	0.9	4.3	6.6	0.2	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
TsaE	PF02367.17	gi|410669440|ref|YP_006921811.1|	-	0.28	11.2	2.1	11	6.0	0.0	3.3	3	0	0	3	3	3	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
MobB	PF03205.14	gi|410669440|ref|YP_006921811.1|	-	0.32	10.9	1.5	15	5.5	0.9	3.0	2	1	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_33	PF13671.6	gi|410669440|ref|YP_006921811.1|	-	0.37	11.0	5.6	0.39	10.9	0.2	3.0	3	2	0	3	3	2	0	AAA	domain
LpxK	PF02606.14	gi|410669440|ref|YP_006921811.1|	-	0.59	9.2	2.6	9.5	5.2	0.1	2.3	2	0	0	2	2	2	0	Tetraacyldisaccharide-1-P	4'-kinase
LMWPc	PF01451.21	gi|410669441|ref|YP_006921812.1|	-	4.2e-18	66.1	0.4	6.9e-18	65.4	0.4	1.3	1	1	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
MtrA	PF04208.14	gi|410669443|ref|YP_006921814.1|	-	4.8e-46	156.5	0.1	6.2e-46	156.2	0.1	1.1	1	0	0	1	1	1	1	Tetrahydromethanopterin	S-methyltransferase,	subunit	A
Phage_int_SAM_3	PF14659.6	gi|410669443|ref|YP_006921814.1|	-	0.05	13.9	1.0	1.6	9.0	0.0	2.6	3	0	0	3	3	3	0	Phage	integrase,	N-terminal	SAM-like	domain
DGC	PF08859.11	gi|410669444|ref|YP_006921815.1|	-	2.4e-33	114.4	2.2	3e-33	114.1	2.2	1.1	1	0	0	1	1	1	1	DGC	domain
Thioredoxin_3	PF13192.6	gi|410669445|ref|YP_006921816.1|	-	3.5e-27	94.2	2.3	3.8e-27	94.1	2.3	1.0	1	0	0	1	1	1	1	Thioredoxin	domain
Glutaredoxin	PF00462.24	gi|410669445|ref|YP_006921816.1|	-	0.00019	21.6	0.3	0.00035	20.7	0.3	1.5	1	1	0	1	1	1	1	Glutaredoxin
ArsD	PF06953.11	gi|410669445|ref|YP_006921816.1|	-	0.0053	17.1	0.1	0.0067	16.8	0.1	1.3	1	1	0	1	1	1	1	Arsenical	resistance	operon	trans-acting	repressor	ArsD
DUF1611	PF07755.11	gi|410669445|ref|YP_006921816.1|	-	0.025	13.9	0.3	0.026	13.8	0.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
Thioredoxin_4	PF13462.6	gi|410669445|ref|YP_006921816.1|	-	0.057	13.6	0.9	0.2	11.8	0.4	1.8	1	1	0	1	1	1	0	Thioredoxin
Thioredoxin	PF00085.20	gi|410669445|ref|YP_006921816.1|	-	0.058	13.4	0.1	0.06	13.3	0.1	1.1	1	0	0	1	1	1	0	Thioredoxin
Metallophos_2	PF12850.7	gi|410669446|ref|YP_006921817.1|	-	9.6e-11	42.1	0.0	1.3e-10	41.8	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
DUF1264	PF06884.11	gi|410669446|ref|YP_006921817.1|	-	0.075	12.6	0.0	0.11	12.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1264)
RecR	PF02132.15	gi|410669447|ref|YP_006921818.1|	-	0.0013	18.3	1.8	0.047	13.3	0.1	2.1	1	1	1	2	2	2	2	RecR	protein
zf-ribbon_3	PF13248.6	gi|410669447|ref|YP_006921818.1|	-	0.0053	16.1	3.1	0.086	12.3	3.1	2.1	1	1	0	1	1	1	1	zinc-ribbon	domain
FYVE	PF01363.21	gi|410669447|ref|YP_006921818.1|	-	0.01	16.0	1.0	0.01	16.0	1.0	1.2	1	0	0	1	1	1	0	FYVE	zinc	finger
UPF0547	PF10571.9	gi|410669447|ref|YP_006921818.1|	-	0.027	14.5	4.2	0.69	10.1	0.7	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
PBP_like_2	PF12849.7	gi|410669449|ref|YP_006921819.1|	-	1.3e-37	130.1	0.4	4.3e-37	128.3	0.4	1.7	1	1	0	1	1	1	1	PBP	superfamily	domain
PBP_like	PF12727.7	gi|410669449|ref|YP_006921819.1|	-	6e-18	64.7	0.0	8e-18	64.3	0.0	1.1	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_11	PF13531.6	gi|410669449|ref|YP_006921819.1|	-	0.022	14.5	0.0	0.066	13.0	0.0	1.8	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|410669449|ref|YP_006921819.1|	-	0.041	13.3	0.0	0.063	12.7	0.0	1.3	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
Phosphonate-bd	PF12974.7	gi|410669450|ref|YP_006921821.1|	-	2.1e-40	138.9	0.0	2.4e-40	138.7	0.0	1.0	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
SBP_bac_3	PF00497.20	gi|410669450|ref|YP_006921821.1|	-	0.0001	21.8	0.0	0.00075	19.0	0.0	1.9	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	proteins,	family	3
NMT1	PF09084.11	gi|410669450|ref|YP_006921821.1|	-	0.0092	15.9	0.0	0.019	14.9	0.0	1.6	1	1	0	1	1	1	1	NMT1/THI5	like
Peptidase_M91	PF14891.6	gi|410669450|ref|YP_006921821.1|	-	0.1	12.9	0.1	0.18	12.1	0.1	1.3	1	0	0	1	1	1	0	Effector	protein
HATPase_c	PF02518.26	gi|410669451|ref|YP_006921822.1|	-	2.2e-24	86.1	0.9	9.2e-24	84.1	0.0	2.5	3	0	0	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|410669451|ref|YP_006921822.1|	-	6.2e-12	45.4	0.2	2e-11	43.8	0.2	2.0	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
sCache_3_2	PF17203.4	gi|410669451|ref|YP_006921822.1|	-	1.2e-09	38.4	0.0	2.2e-09	37.6	0.0	1.4	1	0	0	1	1	1	1	Single	cache	domain	3
HAMP	PF00672.25	gi|410669451|ref|YP_006921822.1|	-	5.1e-09	36.4	0.0	1.4e-08	35.0	0.0	1.8	1	0	0	1	1	1	1	HAMP	domain
PAS_9	PF13426.7	gi|410669451|ref|YP_006921822.1|	-	2.3e-07	31.0	0.1	9.3e-07	29.1	0.1	2.1	2	0	0	2	2	2	1	PAS	domain
dCache_1	PF02743.18	gi|410669451|ref|YP_006921822.1|	-	0.00071	19.4	0.0	1.1	9.0	0.0	3.4	3	0	0	3	3	3	1	Cache	domain
HATPase_c_3	PF13589.6	gi|410669451|ref|YP_006921822.1|	-	0.0028	17.5	0.1	0.0066	16.3	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|410669451|ref|YP_006921822.1|	-	0.015	15.3	0.0	0.055	13.5	0.0	2.1	2	0	0	2	2	2	0	PAS	fold
DUF2222	PF09984.9	gi|410669451|ref|YP_006921822.1|	-	0.022	14.7	0.0	0.059	13.2	0.0	1.7	1	0	0	1	1	1	0	Uncharacterised	signal	transduction	histidine	kinase	domain	(DUF2222)
HAD_2	PF13419.6	gi|410669452|ref|YP_006921823.1|	-	6.7e-30	104.5	0.0	7.8e-30	104.3	0.0	1.0	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|410669452|ref|YP_006921823.1|	-	3.1e-12	47.2	0.1	1.4e-11	45.1	0.1	1.8	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
NIF	PF03031.18	gi|410669452|ref|YP_006921823.1|	-	0.001	18.9	0.0	0.0085	15.9	0.0	2.0	1	1	0	1	1	1	1	NLI	interacting	factor-like	phosphatase
HAD	PF12710.7	gi|410669452|ref|YP_006921823.1|	-	0.0016	18.9	0.0	0.0025	18.2	0.0	1.4	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|410669452|ref|YP_006921823.1|	-	0.0065	16.5	0.0	0.014	15.5	0.0	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
Glyco_tran_28_C	PF04101.16	gi|410669453|ref|YP_006921824.1|	-	3.6e-15	56.3	0.0	6.3e-15	55.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	family	28	C-terminal	domain
Glyco_trans_1_3	PF13528.6	gi|410669453|ref|YP_006921824.1|	-	1.7e-12	47.3	0.0	2.8e-06	26.8	0.0	2.1	2	0	0	2	2	2	2	Glycosyl	transferase	family	1
Glyco_transf_28	PF03033.20	gi|410669453|ref|YP_006921824.1|	-	3.1e-05	24.0	0.0	5.2e-05	23.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	family	28	N-terminal	domain
Glyco_trans_4_2	PF13477.6	gi|410669453|ref|YP_006921824.1|	-	0.00012	22.1	0.1	0.00025	21.1	0.1	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_transf_4	PF13439.6	gi|410669453|ref|YP_006921824.1|	-	0.0015	18.6	0.0	0.0033	17.4	0.0	1.5	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
UDPGT	PF00201.18	gi|410669453|ref|YP_006921824.1|	-	0.16	10.7	0.0	0.35	9.6	0.0	1.4	2	0	0	2	2	2	0	UDP-glucoronosyl	and	UDP-glucosyl	transferase
PHP	PF02811.19	gi|410669454|ref|YP_006921825.1|	-	0.00025	21.4	0.0	0.00047	20.5	0.0	1.6	1	1	0	1	1	1	1	PHP	domain
Aconitase	PF00330.20	gi|410669454|ref|YP_006921825.1|	-	0.11	11.5	0.0	0.15	11.0	0.0	1.1	1	0	0	1	1	1	0	Aconitase	family	(aconitate	hydratase)
PHP_C	PF13263.6	gi|410669454|ref|YP_006921825.1|	-	0.12	12.1	0.0	0.23	11.2	0.0	1.5	1	0	0	1	1	1	0	PHP-associated
PBD	PF00786.28	gi|410669454|ref|YP_006921825.1|	-	0.13	12.6	0.0	0.28	11.6	0.0	1.6	1	0	0	1	1	1	0	P21-Rho-binding	domain
Glyco_trans_1_3	PF13528.6	gi|410669455|ref|YP_006921826.1|	-	1.3e-16	60.8	0.0	4.7e-09	36.0	0.0	2.2	2	0	0	2	2	2	2	Glycosyl	transferase	family	1
Glyco_tran_28_C	PF04101.16	gi|410669455|ref|YP_006921826.1|	-	1.1e-08	35.2	0.0	2e-08	34.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	family	28	C-terminal	domain
Glyco_transf_4	PF13439.6	gi|410669455|ref|YP_006921826.1|	-	2.6e-07	30.8	0.0	6.4e-07	29.5	0.0	1.6	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
UDPGT	PF00201.18	gi|410669455|ref|YP_006921826.1|	-	4.1e-06	25.9	0.0	7.2e-06	25.1	0.0	1.3	1	0	0	1	1	1	1	UDP-glucoronosyl	and	UDP-glucosyl	transferase
Glyco_transf_28	PF03033.20	gi|410669455|ref|YP_006921826.1|	-	1.9e-05	24.7	0.0	3.6e-05	23.8	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	family	28	N-terminal	domain
Glyco_trans_4_2	PF13477.6	gi|410669455|ref|YP_006921826.1|	-	0.00011	22.2	0.0	0.00026	21.0	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_trans_4_4	PF13579.6	gi|410669455|ref|YP_006921826.1|	-	0.00015	22.3	0.0	0.00023	21.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_4	PF13692.6	gi|410669455|ref|YP_006921826.1|	-	0.0013	19.2	0.0	0.0034	17.8	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|410669455|ref|YP_006921826.1|	-	0.024	14.2	0.0	0.046	13.3	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
TT1725	PF18324.1	gi|410669456|ref|YP_006921827.1|	-	0.026	14.6	0.1	0.027	14.6	0.1	1.0	1	0	0	1	1	1	0	Hypothetical	protein	TT1725
MazE_antitoxin	PF04014.18	gi|410669457|ref|YP_006921828.1|	-	0.0002	21.2	0.3	0.00041	20.2	0.3	1.6	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
B-block_TFIIIC	PF04182.12	gi|410669461|ref|YP_006921832.1|	-	2.6e-05	24.3	0.0	3.4e-05	23.9	0.0	1.2	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
MarR	PF01047.22	gi|410669461|ref|YP_006921832.1|	-	0.0022	17.9	0.0	0.0033	17.3	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|410669461|ref|YP_006921832.1|	-	0.013	16.0	0.0	0.017	15.6	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|410669461|ref|YP_006921832.1|	-	0.028	14.3	0.0	0.04	13.8	0.0	1.2	1	0	0	1	1	1	0	MarR	family
HTH_24	PF13412.6	gi|410669461|ref|YP_006921832.1|	-	0.056	13.0	0.1	0.079	12.5	0.1	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
LSM	PF01423.22	gi|410669462|ref|YP_006921833.1|	-	4.2e-15	55.2	0.2	4.3e-15	55.1	0.2	1.0	1	0	0	1	1	1	1	LSM	domain
DUF3467	PF11950.8	gi|410669463|ref|YP_006921834.1|	-	8.1e-18	64.4	0.0	1.1e-17	63.9	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3467)
Glyco_hydro_38C	PF07748.13	gi|410669463|ref|YP_006921834.1|	-	0.0044	17.1	0.1	0.81	9.7	0.0	2.1	1	1	1	2	2	2	2	Glycosyl	hydrolases	family	38	C-terminal	domain
DEAD	PF00270.29	gi|410669464|ref|YP_006921835.1|	-	1.5e-22	80.2	0.1	3.3e-22	79.1	0.1	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|410669464|ref|YP_006921835.1|	-	5.9e-15	55.6	0.0	1.6e-14	54.1	0.0	1.9	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|410669464|ref|YP_006921835.1|	-	2e-08	34.4	0.0	4.9e-08	33.2	0.0	1.6	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
ATPase	PF06745.13	gi|410669465|ref|YP_006921836.1|	-	3.2e-07	29.9	0.0	5.2e-07	29.2	0.0	1.3	1	0	0	1	1	1	1	KaiC
PAXNEB	PF05625.11	gi|410669465|ref|YP_006921836.1|	-	0.0068	15.6	0.0	0.01	15.0	0.0	1.2	1	0	0	1	1	1	1	PAXNEB	protein
PNP_UDP_1	PF01048.20	gi|410669466|ref|YP_006921837.1|	-	8.6e-39	133.2	0.5	9.7e-39	133.0	0.5	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
DUF373	PF04123.13	gi|410669467|ref|YP_006921838.1|	-	5.6e-117	390.9	11.6	6.3e-117	390.8	11.6	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
AC_N	PF16214.5	gi|410669467|ref|YP_006921838.1|	-	0.18	10.9	0.6	0.23	10.6	0.6	1.2	1	0	0	1	1	1	0	Adenylyl	cyclase	N-terminal	extracellular	and	transmembrane	region
PRA1	PF03208.19	gi|410669467|ref|YP_006921838.1|	-	1.5	8.4	12.5	0.049	13.3	1.2	2.7	3	0	0	3	3	3	0	PRA1	family	protein
MAF_flag10	PF01973.18	gi|410669468|ref|YP_006921839.1|	-	3.5e-29	101.7	0.2	4e-29	101.5	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
PliI	PF16743.5	gi|410669468|ref|YP_006921839.1|	-	0.096	12.4	0.2	0.16	11.7	0.2	1.5	1	0	0	1	1	1	0	Periplasmic	lysozyme	inhibitor	of	I-type	lysozyme
TPK_catalytic	PF04263.16	gi|410669468|ref|YP_006921839.1|	-	0.1	12.7	0.3	0.19	11.8	0.3	1.5	1	1	0	1	1	1	0	Thiamin	pyrophosphokinase,	catalytic	domain
tRNA-synt_1	PF00133.22	gi|410669469|ref|YP_006921840.1|	-	2.7e-202	673.2	1.4	3.8e-202	672.8	1.4	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|410669469|ref|YP_006921840.1|	-	6.4e-35	120.4	0.4	1.5e-34	119.1	0.4	1.6	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|410669469|ref|YP_006921840.1|	-	2.9e-26	92.1	2.9	5.1e-11	41.9	0.1	3.7	4	0	0	4	4	4	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.19	gi|410669469|ref|YP_006921840.1|	-	4.4e-08	32.8	0.0	1.3e-06	28.0	0.0	2.3	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.18	gi|410669469|ref|YP_006921840.1|	-	0.0044	16.0	0.0	0.014	14.4	0.0	1.7	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1_2	PF13603.6	gi|410669469|ref|YP_006921840.1|	-	0.012	15.2	0.0	0.037	13.5	0.0	1.9	1	1	0	1	1	1	0	Leucyl-tRNA	synthetase,	Domain	2
IBR	PF01485.21	gi|410669469|ref|YP_006921840.1|	-	0.09	13.0	0.2	1.2	9.4	0.0	2.5	2	0	0	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
Beta-lactamase	PF00144.24	gi|410669470|ref|YP_006921841.1|	-	2.5e-37	128.9	0.0	3.3e-37	128.5	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase
Beta-lactamase2	PF13354.6	gi|410669470|ref|YP_006921841.1|	-	0.044	13.4	0.0	0.55	9.8	0.0	2.2	2	0	0	2	2	2	0	Beta-lactamase	enzyme	family
DUF2769	PF10967.8	gi|410669471|ref|YP_006921842.1|	-	1.2e-20	73.9	13.2	1.8e-20	73.4	13.2	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2769)
Methylase_S	PF01420.19	gi|410669472|ref|YP_006921843.1|	-	7.7e-16	58.8	0.0	9.8e-16	58.4	0.0	1.1	1	0	0	1	1	1	1	Type	I	restriction	modification	DNA	specificity	domain
DUF4272	PF14094.6	gi|410669472|ref|YP_006921843.1|	-	0.13	11.4	1.6	0.23	10.7	0.7	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4272)
zf-ribbon_3	PF13248.6	gi|410669473|ref|YP_006921844.1|	-	3.1e-05	23.2	0.9	6.6e-05	22.2	0.9	1.6	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|410669473|ref|YP_006921844.1|	-	0.00013	21.6	1.8	0.00025	20.6	1.8	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|410669473|ref|YP_006921844.1|	-	0.00078	19.4	0.7	0.0015	18.5	0.7	1.5	1	0	0	1	1	1	1	Double	zinc	ribbon
MtrE	PF04206.12	gi|410669473|ref|YP_006921844.1|	-	0.021	14.2	0.1	0.03	13.7	0.1	1.2	1	0	0	1	1	1	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	E
Ogr_Delta	PF04606.12	gi|410669473|ref|YP_006921844.1|	-	0.032	14.2	1.1	0.22	11.5	0.1	2.3	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-LITAF-like	PF10601.9	gi|410669473|ref|YP_006921844.1|	-	0.035	14.4	1.5	0.34	11.2	0.1	2.2	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|410669473|ref|YP_006921844.1|	-	0.055	13.4	2.5	0.1	12.6	0.1	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-NADH-PPase	PF09297.11	gi|410669473|ref|YP_006921844.1|	-	0.063	12.9	1.6	0.18	11.5	1.6	1.7	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|410669473|ref|YP_006921844.1|	-	0.11	12.4	1.4	14	5.7	0.0	2.5	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
Prok-RING_1	PF14446.6	gi|410669473|ref|YP_006921844.1|	-	0.12	12.3	2.0	0.16	11.9	0.9	1.7	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
DUF983	PF06170.12	gi|410669473|ref|YP_006921844.1|	-	0.13	12.7	0.6	4.6	7.7	0.1	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF983)
DNA_ligase_ZBD	PF03119.16	gi|410669473|ref|YP_006921844.1|	-	0.14	12.2	1.2	1.1	9.4	0.0	2.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DUF4428	PF14471.6	gi|410669473|ref|YP_006921844.1|	-	0.15	12.0	0.4	0.41	10.6	0.4	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4428)
YacG	PF03884.14	gi|410669473|ref|YP_006921844.1|	-	0.15	11.8	0.8	0.31	10.8	0.7	1.6	1	1	0	1	1	1	0	DNA	gyrase	inhibitor	YacG
Nudix_N_2	PF14803.6	gi|410669473|ref|YP_006921844.1|	-	0.37	10.8	3.8	16	5.5	4.2	2.4	1	1	1	2	2	2	0	Nudix	N-terminal
UPF0547	PF10571.9	gi|410669473|ref|YP_006921844.1|	-	0.37	10.9	5.5	1.5	8.9	5.5	1.9	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
CSM2	PF16834.5	gi|410669475|ref|YP_006921846.1|	-	0.025	14.2	0.0	0.026	14.2	0.0	1.0	1	0	0	1	1	1	0	Shu	complex	component	Csm2,	DNA-binding
E1-E2_ATPase	PF00122.20	gi|410669477|ref|YP_006921848.1|	-	1.3e-55	187.7	3.1	1.3e-55	187.7	3.1	4.2	4	1	1	5	5	5	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.21	gi|410669477|ref|YP_006921848.1|	-	2.4e-39	134.9	11.3	2.4e-39	134.9	11.3	2.2	3	0	0	3	3	3	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.26	gi|410669477|ref|YP_006921848.1|	-	7.4e-26	91.7	1.0	1.4e-24	87.5	1.0	2.7	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase	PF13246.6	gi|410669477|ref|YP_006921848.1|	-	2.2e-25	88.5	0.0	6.9e-25	87.0	0.0	1.9	1	0	0	1	1	1	1	Cation	transport	ATPase	(P-type)
Cation_ATPase_N	PF00690.26	gi|410669477|ref|YP_006921848.1|	-	6e-14	51.5	2.5	8.3e-14	51.0	0.2	2.6	3	0	0	3	3	3	1	Cation	transporter/ATPase,	N-terminus
Hydrolase_3	PF08282.12	gi|410669477|ref|YP_006921848.1|	-	2.6e-07	30.7	0.2	0.025	14.3	0.0	2.4	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|410669477|ref|YP_006921848.1|	-	1.4e-06	28.8	0.1	2.1e-05	25.0	0.1	2.7	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Biotin_carb_N	PF00289.22	gi|410669477|ref|YP_006921848.1|	-	0.0052	17.3	0.4	4.7	7.8	0.1	2.7	2	0	0	2	2	2	2	Biotin	carboxylase,	N-terminal	domain
Kinase-like	PF14531.6	gi|410669477|ref|YP_006921848.1|	-	0.0068	15.8	0.1	4.8	6.4	0.0	3.1	3	0	0	3	3	3	1	Kinase-like
Hydrolase_6	PF13344.6	gi|410669477|ref|YP_006921848.1|	-	0.054	13.6	0.0	1.3	9.2	0.0	2.9	3	0	0	3	3	3	0	Haloacid	dehalogenase-like	hydrolase
DUF21	PF01595.20	gi|410669478|ref|YP_006921849.1|	-	3e-47	160.6	8.1	4.6e-47	160.0	8.1	1.3	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CorC_HlyC	PF03471.17	gi|410669478|ref|YP_006921849.1|	-	1.6e-22	79.3	0.7	3.5e-22	78.2	0.1	1.9	2	0	0	2	2	2	1	Transporter	associated	domain
CBS	PF00571.28	gi|410669478|ref|YP_006921849.1|	-	4.2e-13	49.5	3.2	2.5e-08	34.3	0.2	3.4	4	0	0	4	4	4	2	CBS	domain
IMPDH	PF00478.25	gi|410669478|ref|YP_006921849.1|	-	0.066	12.2	0.1	0.11	11.5	0.1	1.2	1	0	0	1	1	1	0	IMP	dehydrogenase	/	GMP	reductase	domain
DUF92	PF01940.16	gi|410669478|ref|YP_006921849.1|	-	0.42	10.0	4.6	0.33	10.3	1.5	2.0	2	0	0	2	2	2	0	Integral	membrane	protein	DUF92
Nudix_hydro	PF18290.1	gi|410669479|ref|YP_006921850.1|	-	0.16	12.0	0.0	0.57	10.2	0.0	2.0	2	0	0	2	2	2	0	Nudix	hydrolase	domain
DUF1249	PF06853.12	gi|410669479|ref|YP_006921850.1|	-	0.17	11.9	0.0	0.41	10.7	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1249)
DUF1907	PF08925.11	gi|410669479|ref|YP_006921850.1|	-	0.21	11.0	0.0	0.41	10.0	0.0	1.4	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF1907)
DDE_Tnp_IS1	PF03400.13	gi|410669481|ref|YP_006921852.1|	-	1.2e-08	35.4	0.1	1.3e-08	35.3	0.1	1.0	1	0	0	1	1	1	1	IS1	transposase
TERT_thumb	PF17984.1	gi|410669481|ref|YP_006921852.1|	-	0.022	14.6	0.1	0.022	14.6	0.1	1.1	1	0	0	1	1	1	0	Telomerase	reverse	transcriptase	thumb	DNA	binding	domain
EPO_TPO	PF00758.18	gi|410669481|ref|YP_006921852.1|	-	0.068	13.2	0.0	0.084	12.9	0.0	1.1	1	0	0	1	1	1	0	Erythropoietin/thrombopoietin
CxxCxxCC	PF03692.15	gi|410669482|ref|YP_006921853.1|	-	2.9e-07	31.1	5.0	6.2e-07	30.0	5.0	1.6	1	0	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
CTP_transf_1	PF01148.20	gi|410669483|ref|YP_006921854.1|	-	0.029	14.2	10.7	0.13	12.0	10.7	1.8	1	1	0	1	1	1	0	Cytidylyltransferase	family
DUF4177	PF13783.6	gi|410669484|ref|YP_006921855.1|	-	5.7e-05	23.3	0.2	6.7e-05	23.1	0.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4177)
Copper-bind	PF00127.20	gi|410669485|ref|YP_006921856.1|	-	2.5e-08	34.3	1.7	3.6e-06	27.3	1.7	2.3	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cytochrome_P460	PF16694.5	gi|410669485|ref|YP_006921856.1|	-	4.3e-08	33.5	0.1	1.6e-07	31.7	0.1	1.9	1	1	0	1	1	1	1	Cytochrome	P460
Cupredoxin_1	PF13473.6	gi|410669485|ref|YP_006921856.1|	-	1.6e-07	31.3	0.0	4.2e-07	30.0	0.0	1.6	2	0	0	2	2	2	1	Cupredoxin-like	domain
zf-RRN7	PF11781.8	gi|410669485|ref|YP_006921856.1|	-	5.5	6.8	7.1	13	5.6	0.4	2.9	3	0	0	3	3	3	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Copper-bind	PF00127.20	gi|410669486|ref|YP_006921857.1|	-	6.7e-09	36.1	0.3	4.6e-08	33.4	0.3	1.9	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|410669486|ref|YP_006921857.1|	-	2.3e-06	27.7	0.0	2.6e-06	27.5	0.0	1.0	1	0	0	1	1	1	1	Cupredoxin-like	domain
adh_short	PF00106.25	gi|410669487|ref|YP_006921858.1|	-	6.1e-60	202.0	0.6	7e-60	201.8	0.6	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|410669487|ref|YP_006921858.1|	-	1.8e-47	161.9	0.5	8.7e-47	159.6	0.5	1.8	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|410669487|ref|YP_006921858.1|	-	2.3e-15	57.0	0.6	3.2e-15	56.5	0.6	1.1	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|410669487|ref|YP_006921858.1|	-	1.1e-05	25.0	0.1	5.1e-05	22.8	0.1	1.9	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
F420_oxidored	PF03807.17	gi|410669487|ref|YP_006921858.1|	-	0.0049	17.4	0.3	0.0099	16.4	0.3	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|410669487|ref|YP_006921858.1|	-	0.047	13.1	0.8	0.065	12.6	0.1	1.6	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Period_C	PF12114.8	gi|410669487|ref|YP_006921858.1|	-	0.13	11.8	0.0	0.2	11.2	0.0	1.3	1	0	0	1	1	1	0	Period	protein	2/3C-terminal	region
Methyltr_RsmB-F	PF01189.17	gi|410669487|ref|YP_006921858.1|	-	0.17	11.5	0.1	0.33	10.6	0.0	1.5	2	0	0	2	2	2	0	16S	rRNA	methyltransferase	RsmB/F
PBP	PF01161.20	gi|410669488|ref|YP_006921859.1|	-	1.5e-24	86.8	0.0	1.8e-24	86.6	0.0	1.0	1	0	0	1	1	1	1	Phosphatidylethanolamine-binding	protein
Abhydrolase_1	PF00561.20	gi|410669489|ref|YP_006921860.1|	-	1.3e-23	84.0	0.0	4.5e-17	62.6	0.0	2.0	2	0	0	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|410669489|ref|YP_006921860.1|	-	5.3e-22	79.5	0.4	6.4e-22	79.2	0.4	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|410669489|ref|YP_006921860.1|	-	2e-14	53.4	0.0	6.6e-14	51.7	0.0	1.7	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_4	PF08386.10	gi|410669489|ref|YP_006921860.1|	-	1.8e-05	24.7	0.0	7.6e-05	22.8	0.0	1.8	2	0	0	2	2	2	1	TAP-like	protein
Ndr	PF03096.14	gi|410669489|ref|YP_006921860.1|	-	0.0054	15.5	0.0	0.007	15.1	0.0	1.1	1	0	0	1	1	1	1	Ndr	family
Thioesterase	PF00975.20	gi|410669489|ref|YP_006921860.1|	-	0.011	15.9	0.0	0.024	14.8	0.0	1.5	1	1	1	2	2	2	0	Thioesterase	domain
FSH1	PF03959.13	gi|410669489|ref|YP_006921860.1|	-	0.17	11.5	0.0	1.6	8.4	0.0	2.0	2	0	0	2	2	2	0	Serine	hydrolase	(FSH1)
SCFA_trans	PF02667.14	gi|410669489|ref|YP_006921860.1|	-	0.18	10.7	0.0	0.26	10.2	0.0	1.1	1	0	0	1	1	1	0	Short	chain	fatty	acid	transporter
DUF872	PF05915.12	gi|410669490|ref|YP_006921861.1|	-	0.066	13.4	0.7	0.066	13.4	0.7	1.6	2	0	0	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF872)
B12-binding_2	PF02607.17	gi|410669491|ref|YP_006921862.1|	-	8.1e-11	42.2	0.1	9.3e-11	42.0	0.1	1.1	1	0	0	1	1	1	1	B12	binding	domain
CoA_binding	PF02629.19	gi|410669491|ref|YP_006921862.1|	-	0.15	12.7	0.3	0.17	12.6	0.3	1.1	1	0	0	1	1	1	0	CoA	binding	domain
ParE_toxin	PF05016.15	gi|410669494|ref|YP_006921865.1|	-	3.9e-14	53.0	0.0	4.3e-14	52.9	0.0	1.0	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
YafQ_toxin	PF15738.5	gi|410669494|ref|YP_006921865.1|	-	6.7e-06	26.3	1.1	2.1e-05	24.8	1.1	1.7	1	1	0	1	1	1	1	Bacterial	toxin	of	type	II	toxin-antitoxin	system,	YafQ
ParE-like_toxin	PF15781.5	gi|410669494|ref|YP_006921865.1|	-	0.00019	21.3	0.1	0.00036	20.4	0.1	1.5	1	1	0	1	1	1	1	ParE-like	toxin	of	type	II	bacterial	toxin-antitoxin	system
Ubiquitin_5	PF18037.1	gi|410669495|ref|YP_006921866.1|	-	0.0042	17.4	1.2	0.0096	16.3	0.2	2.0	2	0	0	2	2	2	1	Ubiquitin-like	domain
DDE_Tnp_1_2	PF13586.6	gi|410669496|ref|YP_006921867.1|	-	2.3e-15	56.7	1.0	4.9e-14	52.5	0.1	2.1	2	0	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|410669496|ref|YP_006921867.1|	-	4.5e-12	46.1	3.3	1.1e-11	44.8	3.3	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_4	PF13359.6	gi|410669496|ref|YP_006921867.1|	-	0.053	13.2	0.0	0.063	12.9	0.0	1.1	1	0	0	1	1	1	0	DDE	superfamily	endonuclease
DUF4096	PF13340.6	gi|410669497|ref|YP_006921868.1|	-	4.5e-28	97.3	0.9	5.7e-28	96.9	0.9	1.1	1	0	0	1	1	1	1	Putative	transposase	of	IS4/5	family	(DUF4096)
DUF3452	PF11934.8	gi|410669498|ref|YP_006921869.1|	-	0.089	12.3	0.0	0.1	12.1	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3452)
TetR_N	PF00440.23	gi|410669500|ref|YP_006921871.1|	-	2.8e-17	62.2	0.2	6.3e-17	61.1	0.2	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_29	PF17938.1	gi|410669500|ref|YP_006921871.1|	-	0.013	15.6	0.0	0.029	14.5	0.0	1.7	1	1	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
HTH_Tnp_1_2	PF13022.6	gi|410669500|ref|YP_006921871.1|	-	0.015	15.4	0.1	0.024	14.8	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
TetR_C_25	PF17933.1	gi|410669500|ref|YP_006921871.1|	-	0.032	14.6	0.0	0.054	13.8	0.0	1.3	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|410669500|ref|YP_006921871.1|	-	0.1	12.9	0.0	0.23	11.7	0.0	1.7	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
Fer4	PF00037.27	gi|410669501|ref|YP_006921872.1|	-	7.2e-11	41.4	16.8	1.2e-05	24.9	5.0	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410669501|ref|YP_006921872.1|	-	6.5e-07	29.4	9.6	0.0036	17.4	1.3	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410669501|ref|YP_006921872.1|	-	3.9e-06	26.9	14.7	9.8e-06	25.6	14.7	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410669501|ref|YP_006921872.1|	-	4.4e-05	24.3	16.3	0.00046	21.1	3.4	2.5	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_7	PF12838.7	gi|410669501|ref|YP_006921872.1|	-	5.4e-05	23.7	16.5	0.0028	18.2	17.8	2.4	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Flavodoxin_1	PF00258.25	gi|410669501|ref|YP_006921872.1|	-	7.5e-05	23.0	0.0	0.0001	22.5	0.0	1.2	1	0	0	1	1	1	1	Flavodoxin
Fer4_9	PF13187.6	gi|410669501|ref|YP_006921872.1|	-	7.6e-05	22.8	16.2	0.001	19.1	17.5	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|410669501|ref|YP_006921872.1|	-	0.00013	22.3	12.2	0.044	14.2	2.8	2.4	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|410669501|ref|YP_006921872.1|	-	0.0023	18.1	10.6	0.0048	17.1	10.6	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410669501|ref|YP_006921872.1|	-	0.003	17.6	17.3	0.15	12.2	4.1	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
FMN_red	PF03358.15	gi|410669501|ref|YP_006921872.1|	-	0.0041	16.9	0.0	0.0086	15.8	0.0	1.5	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_3	PF12641.7	gi|410669501|ref|YP_006921872.1|	-	0.0045	16.7	0.0	0.053	13.2	0.0	2.1	2	0	0	2	2	2	1	Flavodoxin	domain
Flavodoxin_5	PF12724.7	gi|410669501|ref|YP_006921872.1|	-	0.0064	16.7	0.0	0.0096	16.2	0.0	1.3	1	0	0	1	1	1	1	Flavodoxin	domain
Fer4_2	PF12797.7	gi|410669501|ref|YP_006921872.1|	-	0.0084	16.1	15.3	0.013	15.6	5.3	2.8	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Flavodoxin_2	PF02525.17	gi|410669501|ref|YP_006921872.1|	-	0.024	14.3	0.0	0.032	13.9	0.0	1.3	1	0	0	1	1	1	0	Flavodoxin-like	fold
Fer4_17	PF13534.6	gi|410669501|ref|YP_006921872.1|	-	0.29	11.7	19.3	0.16	12.6	3.6	2.6	1	1	3	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|410669501|ref|YP_006921872.1|	-	2.3	8.8	18.2	4.9	7.8	2.7	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|410669501|ref|YP_006921872.1|	-	9.2	7.1	13.5	1.8	9.4	1.5	2.9	2	1	0	2	2	2	0	4Fe-4S	single	cluster	domain
Peptidase_M18	PF02127.15	gi|410669502|ref|YP_006921873.1|	-	1e-122	410.1	0.0	1.2e-122	409.9	0.0	1.0	1	0	0	1	1	1	1	Aminopeptidase	I	zinc	metalloprotease	(M18)
Acetyltransf_1	PF00583.25	gi|410669503|ref|YP_006921874.1|	-	1.4e-10	41.5	0.1	2.1e-10	40.9	0.1	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|410669503|ref|YP_006921874.1|	-	2.8e-10	40.5	0.1	4.2e-10	39.9	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|410669503|ref|YP_006921874.1|	-	1.6e-08	34.6	0.0	2.7e-08	33.9	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|410669503|ref|YP_006921874.1|	-	2.4e-06	27.5	0.0	5.1e-06	26.4	0.0	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
MOZ_SAS	PF01853.18	gi|410669503|ref|YP_006921874.1|	-	0.0095	15.6	0.0	0.014	15.1	0.0	1.3	1	0	0	1	1	1	1	MOZ/SAS	family
Acetyltransf_CG	PF14542.6	gi|410669503|ref|YP_006921874.1|	-	0.024	14.7	0.0	0.046	13.8	0.0	1.5	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Acetyltransf_16	PF05301.11	gi|410669503|ref|YP_006921874.1|	-	0.04	13.7	0.0	0.058	13.2	0.0	1.3	1	0	0	1	1	1	0	GNAT	acetyltransferase,	Mec-17
Peptidase_M28	PF04389.17	gi|410669504|ref|YP_006921875.1|	-	1.7e-20	73.6	0.0	3e-20	72.8	0.0	1.4	1	0	0	1	1	1	1	Peptidase	family	M28
Peptidase_M20	PF01546.28	gi|410669504|ref|YP_006921875.1|	-	0.0085	15.8	0.0	0.013	15.2	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M42	PF05343.14	gi|410669504|ref|YP_006921875.1|	-	0.013	14.5	0.1	0.5	9.3	0.0	2.2	1	1	1	2	2	2	0	M42	glutamyl	aminopeptidase
Nicastrin	PF05450.15	gi|410669504|ref|YP_006921875.1|	-	0.034	13.6	0.0	0.089	12.2	0.0	1.8	2	0	0	2	2	2	0	Nicastrin
DUF2733	PF10813.8	gi|410669505|ref|YP_006921876.1|	-	0.048	13.5	15.7	0.5	10.2	1.8	4.3	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2733)
DUF1724	PF08350.10	gi|410669506|ref|YP_006921877.1|	-	7.3e-16	58.1	0.0	7.8e-16	58.0	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
3-dmu-9_3-mt	PF06983.13	gi|410669510|ref|YP_006921881.1|	-	2.3e-14	53.9	0.0	2.7e-14	53.7	0.0	1.1	1	0	0	1	1	1	1	3-demethylubiquinone-9	3-methyltransferase
Glyoxalase	PF00903.25	gi|410669510|ref|YP_006921881.1|	-	2.8e-05	24.3	0.0	6.8e-05	23.1	0.0	1.6	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
DUF1638	PF07796.11	gi|410669511|ref|YP_006921882.1|	-	1.8e-32	112.7	0.0	3.5e-32	111.7	0.0	1.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1638)
Abhydrolase_1	PF00561.20	gi|410669512|ref|YP_006921883.1|	-	1.4e-14	54.4	0.1	4.7e-08	33.0	0.1	2.8	1	1	0	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|410669512|ref|YP_006921883.1|	-	9.5e-07	29.6	0.0	1.3e-06	29.2	0.0	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Ndr	PF03096.14	gi|410669512|ref|YP_006921883.1|	-	0.00027	19.7	0.0	0.00054	18.8	0.0	1.6	1	1	0	1	1	1	1	Ndr	family
DUF915	PF06028.11	gi|410669512|ref|YP_006921883.1|	-	0.0011	18.4	0.0	3.9	6.7	0.0	3.0	2	1	1	3	3	3	2	Alpha/beta	hydrolase	of	unknown	function	(DUF915)
Hydrolase_4	PF12146.8	gi|410669512|ref|YP_006921883.1|	-	0.0054	16.0	0.0	0.022	14.0	0.0	1.9	2	1	0	2	2	2	1	Serine	aminopeptidase,	S33
Radical_SAM	PF04055.21	gi|410669513|ref|YP_006921884.1|	-	2e-16	60.8	0.2	6.1e-16	59.2	0.0	1.9	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|410669513|ref|YP_006921884.1|	-	7.4e-09	35.8	0.2	2.1e-08	34.3	0.2	1.7	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|410669513|ref|YP_006921884.1|	-	3.1e-08	34.0	0.2	8.2e-08	32.6	0.2	1.7	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|410669513|ref|YP_006921884.1|	-	5.5e-05	23.6	0.4	0.00036	21.0	0.0	2.6	3	0	0	3	3	3	1	Iron-sulfur	cluster-binding	domain
DUF3045	PF11243.8	gi|410669513|ref|YP_006921884.1|	-	0.12	12.5	0.0	0.41	10.8	0.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3045)
CarboxypepD_reg	PF13620.6	gi|410669514|ref|YP_006921885.1|	-	0.066	13.5	0.0	0.27	11.5	0.0	2.0	2	0	0	2	2	2	0	Carboxypeptidase	regulatory-like	domain
DUF3007	PF11460.8	gi|410669514|ref|YP_006921885.1|	-	0.083	13.1	0.5	0.7	10.2	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3007)
NnrU	PF07298.11	gi|410669515|ref|YP_006921886.1|	-	1e-06	28.5	3.9	1.4e-06	28.0	3.9	1.2	1	0	0	1	1	1	1	NnrU	protein
PEMT	PF04191.13	gi|410669515|ref|YP_006921886.1|	-	0.0029	18.0	0.9	0.018	15.4	0.1	2.3	2	0	0	2	2	2	1	Phospholipid	methyltransferase
Ala_racemase_N	PF01168.20	gi|410669516|ref|YP_006921887.1|	-	1.1e-22	80.8	0.0	1.3e-22	80.5	0.0	1.1	1	0	0	1	1	1	1	Alanine	racemase,	N-terminal	domain
Lon_C	PF05362.13	gi|410669517|ref|YP_006921888.1|	-	2e-88	295.3	1.0	4e-88	294.3	1.0	1.5	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
AAA	PF00004.29	gi|410669517|ref|YP_006921888.1|	-	1.3e-22	80.6	0.1	6.7e-22	78.3	0.0	2.3	3	0	0	3	3	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ChlI	PF13541.6	gi|410669517|ref|YP_006921888.1|	-	5.3e-10	39.2	0.0	1.1e-09	38.2	0.0	1.6	1	0	0	1	1	1	1	Subunit	ChlI	of	Mg-chelatase
AAA_5	PF07728.14	gi|410669517|ref|YP_006921888.1|	-	1.5e-08	34.8	0.0	1.6e-07	31.4	0.0	2.5	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.6	gi|410669517|ref|YP_006921888.1|	-	2.6e-07	31.2	0.0	0.00011	22.6	0.0	3.4	2	1	1	3	3	3	1	AAA	ATPase	domain
LON_substr_bdg	PF02190.16	gi|410669517|ref|YP_006921888.1|	-	2.7e-07	30.7	0.4	7.4e-07	29.3	0.0	1.9	1	1	1	2	2	2	1	ATP-dependent	protease	La	(LON)	substrate-binding	domain
AAA_22	PF13401.6	gi|410669517|ref|YP_006921888.1|	-	5.5e-06	26.7	0.8	0.00039	20.7	0.0	3.2	2	1	0	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|410669517|ref|YP_006921888.1|	-	0.00013	22.5	1.5	0.014	15.9	0.0	3.6	3	1	0	3	3	3	1	AAA	domain
IstB_IS21	PF01695.17	gi|410669517|ref|YP_006921888.1|	-	0.0002	21.2	0.2	0.0014	18.4	0.0	2.5	3	1	0	3	3	2	1	IstB-like	ATP	binding	protein
AAA_2	PF07724.14	gi|410669517|ref|YP_006921888.1|	-	0.0002	21.5	0.0	0.00081	19.5	0.0	2.0	1	1	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
AAA_23	PF13476.6	gi|410669517|ref|YP_006921888.1|	-	0.00031	21.3	2.0	0.17	12.4	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
RuvB_N	PF05496.12	gi|410669517|ref|YP_006921888.1|	-	0.00059	19.6	2.0	0.0011	18.7	0.0	2.5	4	1	0	4	4	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
TIP49	PF06068.13	gi|410669517|ref|YP_006921888.1|	-	0.0046	16.2	0.4	0.03	13.5	0.1	2.4	3	0	0	3	3	3	1	TIP49	P-loop	domain
NTPase_1	PF03266.15	gi|410669517|ref|YP_006921888.1|	-	0.0061	16.5	0.5	0.21	11.5	0.0	3.0	2	1	1	3	3	3	1	NTPase
Rad17	PF03215.15	gi|410669517|ref|YP_006921888.1|	-	0.0064	16.4	0.0	0.033	14.1	0.0	2.1	2	0	0	2	2	2	1	Rad17	P-loop	domain
RNA_helicase	PF00910.22	gi|410669517|ref|YP_006921888.1|	-	0.012	16.0	0.0	0.034	14.5	0.0	1.8	2	0	0	2	2	1	0	RNA	helicase
AAA_PrkA	PF08298.11	gi|410669517|ref|YP_006921888.1|	-	0.013	14.4	0.0	0.023	13.6	0.0	1.3	1	0	0	1	1	1	0	PrkA	AAA	domain
AAA_33	PF13671.6	gi|410669517|ref|YP_006921888.1|	-	0.013	15.6	0.1	0.054	13.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
Viral_helicase1	PF01443.18	gi|410669517|ref|YP_006921888.1|	-	0.016	15.0	0.0	0.028	14.2	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
Birna_VP4	PF01768.16	gi|410669517|ref|YP_006921888.1|	-	0.017	15.0	0.2	0.037	13.8	0.2	1.5	1	0	0	1	1	1	0	Birnavirus	VP4	protein
TsaE	PF02367.17	gi|410669517|ref|YP_006921888.1|	-	0.022	14.8	0.4	0.049	13.6	0.0	1.8	2	0	0	2	2	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NACHT	PF05729.12	gi|410669517|ref|YP_006921888.1|	-	0.025	14.5	0.0	0.43	10.5	0.0	2.5	2	0	0	2	2	2	0	NACHT	domain
AAA_30	PF13604.6	gi|410669517|ref|YP_006921888.1|	-	0.032	14.0	0.1	0.14	11.8	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
DUF4899	PF16240.5	gi|410669517|ref|YP_006921888.1|	-	0.042	13.0	3.6	0.73	9.0	0.1	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4899)
DUF815	PF05673.13	gi|410669517|ref|YP_006921888.1|	-	0.045	12.9	0.6	0.29	10.3	0.0	2.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF815)
AAA_3	PF07726.11	gi|410669517|ref|YP_006921888.1|	-	0.046	13.6	0.0	0.22	11.4	0.0	2.2	2	1	0	2	2	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_11	PF13086.6	gi|410669517|ref|YP_006921888.1|	-	0.052	13.3	0.7	0.31	10.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
Parvo_NS1	PF01057.17	gi|410669517|ref|YP_006921888.1|	-	0.055	12.6	0.0	0.17	11.0	0.0	1.7	2	0	0	2	2	2	0	Parvovirus	non-structural	protein	NS1
AAA_7	PF12775.7	gi|410669517|ref|YP_006921888.1|	-	0.055	13.0	0.0	0.12	11.9	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_28	PF13521.6	gi|410669517|ref|YP_006921888.1|	-	0.078	13.2	0.0	0.078	13.2	0.0	2.0	3	0	0	3	3	1	0	AAA	domain
T2SSE	PF00437.20	gi|410669517|ref|YP_006921888.1|	-	0.082	12.0	0.8	0.52	9.3	0.8	2.1	1	1	0	1	1	1	0	Type	II/IV	secretion	system	protein
NB-ARC	PF00931.22	gi|410669517|ref|YP_006921888.1|	-	0.11	11.6	1.5	0.2	10.8	0.1	2.0	2	0	0	2	2	2	0	NB-ARC	domain
Toprim_3	PF13362.6	gi|410669517|ref|YP_006921888.1|	-	0.13	12.6	0.1	6.9	7.1	0.0	2.5	2	0	0	2	2	2	0	Toprim	domain
Mg_chelatase	PF01078.21	gi|410669517|ref|YP_006921888.1|	-	0.14	11.5	0.8	0.85	9.0	0.1	2.4	3	0	0	3	3	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_19	PF13245.6	gi|410669517|ref|YP_006921888.1|	-	0.16	12.3	0.8	0.71	10.2	0.1	2.4	3	0	0	3	3	2	0	AAA	domain
MarR	PF01047.22	gi|410669518|ref|YP_006921889.1|	-	1.1e-09	38.1	0.0	2e-09	37.2	0.0	1.5	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|410669518|ref|YP_006921889.1|	-	4.8e-09	36.0	0.0	7.8e-09	35.3	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|410669518|ref|YP_006921889.1|	-	2.1e-06	28.1	0.0	4e-06	27.2	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|410669518|ref|YP_006921889.1|	-	0.00076	19.0	0.0	0.003	17.1	0.0	2.0	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
Fe_dep_repress	PF01325.19	gi|410669518|ref|YP_006921889.1|	-	0.001	19.2	0.0	0.0019	18.3	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.19	gi|410669518|ref|YP_006921889.1|	-	0.002	18.0	0.0	0.0031	17.3	0.0	1.5	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Penicillinase_R	PF03965.16	gi|410669518|ref|YP_006921889.1|	-	0.021	15.2	0.9	0.15	12.4	0.9	2.0	1	1	0	1	1	1	0	Penicillinase	repressor
HTH_5	PF01022.20	gi|410669518|ref|YP_006921889.1|	-	0.065	13.1	0.4	6.1	6.8	0.0	2.5	2	1	1	3	3	3	0	Bacterial	regulatory	protein,	arsR	family
RuvB_C	PF05491.13	gi|410669518|ref|YP_006921889.1|	-	0.068	13.0	0.2	0.2	11.6	0.2	1.9	1	1	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
SAM_Exu	PF18609.1	gi|410669518|ref|YP_006921889.1|	-	0.071	13.2	1.2	0.2	11.8	1.0	1.9	1	1	0	1	1	1	0	Exuperantia	SAM-like	domain
GAT	PF03127.14	gi|410669518|ref|YP_006921889.1|	-	0.073	13.4	0.7	8.5	6.8	0.3	2.2	2	0	0	2	2	2	0	GAT	domain
DUF1724	PF08350.10	gi|410669519|ref|YP_006921890.1|	-	3.8e-19	68.6	0.1	8.2e-19	67.5	0.1	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
MFS_1	PF07690.16	gi|410669520|ref|YP_006921891.1|	-	2.4e-68	230.7	81.3	1.8e-54	185.0	51.9	2.6	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|410669520|ref|YP_006921891.1|	-	1.8e-09	36.9	30.5	3.9e-07	29.3	9.6	2.6	2	1	0	2	2	2	2	MFS_1	like	family
Sugar_tr	PF00083.24	gi|410669520|ref|YP_006921891.1|	-	1.2e-08	34.3	15.4	1.2e-08	34.3	15.4	2.6	2	0	0	2	2	2	1	Sugar	(and	other)	transporter
MFS_2	PF13347.6	gi|410669520|ref|YP_006921891.1|	-	2.7e-07	29.5	45.2	5.1e-07	28.6	17.5	2.9	3	0	0	3	3	3	2	MFS/sugar	transport	protein
MFS_3	PF05977.13	gi|410669520|ref|YP_006921891.1|	-	4.1e-07	28.8	6.8	4.1e-07	28.8	6.8	2.2	2	0	0	2	2	2	1	Transmembrane	secretion	effector
PUCC	PF03209.15	gi|410669520|ref|YP_006921891.1|	-	1.2e-05	24.5	7.1	1.2e-05	24.5	7.1	2.3	2	0	0	2	2	2	1	PUCC	protein
DUF1724	PF08350.10	gi|410669521|ref|YP_006921892.1|	-	2e-22	79.1	1.5	3.9e-22	78.1	1.5	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
HTH_45	PF14947.6	gi|410669521|ref|YP_006921892.1|	-	0.019	15.0	0.1	0.059	13.4	0.1	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix
HTH_5	PF01022.20	gi|410669521|ref|YP_006921892.1|	-	0.019	14.9	0.4	0.032	14.1	0.4	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|410669521|ref|YP_006921892.1|	-	0.044	13.8	0.1	0.076	13.1	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR	PF01047.22	gi|410669521|ref|YP_006921892.1|	-	0.056	13.4	0.0	0.12	12.4	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Stealth_CR3	PF17102.5	gi|410669521|ref|YP_006921892.1|	-	0.12	12.3	0.0	0.27	11.2	0.0	1.5	1	0	0	1	1	1	0	Stealth	protein	CR3,	conserved	region	3
DUF2227	PF09988.9	gi|410669522|ref|YP_006921893.1|	-	2.6e-30	105.5	7.5	4.6e-28	98.2	7.5	2.1	1	1	0	1	1	1	1	Uncharacterized	metal-binding	protein	(DUF2227)
YdjM	PF04307.14	gi|410669522|ref|YP_006921893.1|	-	4.9e-05	22.7	0.9	7.5e-05	22.1	0.9	1.4	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
AA_permease_N	PF08403.10	gi|410669523|ref|YP_006921894.1|	-	0.13	11.8	0.2	0.19	11.3	0.1	1.4	1	1	0	1	1	1	0	Amino	acid	permease	N-terminal
AzlC	PF03591.14	gi|410669526|ref|YP_006921897.1|	-	2.3e-36	125.2	10.8	2.3e-36	125.2	10.8	1.9	2	0	0	2	2	2	1	AzlC	protein
CoA_transf_3	PF02515.17	gi|410669526|ref|YP_006921897.1|	-	0.12	11.5	0.2	0.95	8.5	0.0	2.0	2	0	0	2	2	2	0	CoA-transferase	family	III
Phage_integrase	PF00589.22	gi|410669527|ref|YP_006921898.1|	-	4.4e-10	39.6	0.0	1.2e-09	38.2	0.0	1.8	1	0	0	1	1	1	1	Phage	integrase	family
Phage_integr_3	PF16795.5	gi|410669527|ref|YP_006921898.1|	-	0.00054	19.9	0.0	0.0014	18.6	0.0	1.7	1	0	0	1	1	1	1	Archaeal	phage	integrase
Phage_int_SAM_4	PF13495.6	gi|410669527|ref|YP_006921898.1|	-	0.061	13.8	0.0	18	5.9	0.0	2.8	2	0	0	2	2	2	0	Phage	integrase,	N-terminal	SAM-like	domain
DUF1640	PF07798.11	gi|410669527|ref|YP_006921898.1|	-	0.15	12.1	3.8	0.5	10.4	3.9	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1640)
HTH_32	PF13565.6	gi|410669531|ref|YP_006921902.1|	-	1e-12	48.4	0.0	1.7e-12	47.8	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_33	PF13592.6	gi|410669531|ref|YP_006921902.1|	-	2.2e-08	33.6	0.0	4.7e-08	32.6	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_29	PF13551.6	gi|410669531|ref|YP_006921902.1|	-	3.5e-08	33.4	0.0	6.8e-08	32.4	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|410669531|ref|YP_006921902.1|	-	2.7e-06	27.0	0.1	1.2e-05	24.9	0.0	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|410669531|ref|YP_006921902.1|	-	0.0016	18.5	0.0	0.0038	17.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_ABP1_N	PF18107.1	gi|410669531|ref|YP_006921902.1|	-	0.0031	17.2	0.1	0.0053	16.4	0.1	1.3	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
DDE_3	PF13358.6	gi|410669532|ref|YP_006921903.1|	-	6.1e-23	81.2	0.1	6.1e-23	81.2	0.1	1.4	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
DDE_1	PF03184.19	gi|410669532|ref|YP_006921903.1|	-	6e-08	32.5	0.2	7.4e-08	32.2	0.2	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|410669532|ref|YP_006921903.1|	-	1.2e-05	25.5	0.0	1.8e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	Integrase	core	domain
DDE_Tnp_ISAZ013	PF07592.11	gi|410669532|ref|YP_006921903.1|	-	0.0076	15.3	0.1	0.01	14.9	0.1	1.2	1	0	0	1	1	1	1	Rhodopirellula	transposase	DDE	domain
Ribosomal_S25	PF03297.15	gi|410669533|ref|YP_006921904.1|	-	0.039	14.2	0.0	0.04	14.1	0.0	1.0	1	0	0	1	1	1	0	S25	ribosomal	protein
DUF2848	PF11010.8	gi|410669534|ref|YP_006921905.1|	-	0.046	13.3	0.0	0.088	12.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2848)
RuBisCO_large	PF00016.20	gi|410669536|ref|YP_006921907.1|	-	2.2e-94	316.0	0.0	2.5e-67	227.2	0.0	2.1	1	1	1	2	2	2	2	Ribulose	bisphosphate	carboxylase	large	chain,	catalytic	domain
RuBisCO_large_N	PF02788.16	gi|410669536|ref|YP_006921907.1|	-	5e-29	100.9	0.0	9.2e-29	100.1	0.0	1.5	1	0	0	1	1	1	1	Ribulose	bisphosphate	carboxylase	large	chain,	N-terminal	domain
HlyC	PF02794.16	gi|410669537|ref|YP_006921908.1|	-	0.069	13.0	0.0	0.07	13.0	0.0	1.0	1	0	0	1	1	1	0	RTX	toxin	acyltransferase	family
DUF1724	PF08350.10	gi|410669538|ref|YP_006921909.1|	-	6.6e-20	71.0	2.1	1.7e-19	69.7	2.1	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
HemN_C	PF06969.16	gi|410669538|ref|YP_006921909.1|	-	0.026	14.6	0.2	4.8	7.3	0.0	2.4	2	0	0	2	2	2	0	HemN	C-terminal	domain
HTH_45	PF14947.6	gi|410669538|ref|YP_006921909.1|	-	0.029	14.3	0.1	0.076	13.0	0.1	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix
MarR	PF01047.22	gi|410669538|ref|YP_006921909.1|	-	0.031	14.2	0.4	0.079	12.9	0.2	1.8	2	0	0	2	2	2	0	MarR	family
PLDc_2	PF13091.6	gi|410669538|ref|YP_006921909.1|	-	0.081	12.8	0.0	0.75	9.7	0.0	2.2	2	0	0	2	2	2	0	PLD-like	domain
Rhodanese	PF00581.20	gi|410669539|ref|YP_006921910.1|	-	9.5e-18	64.7	0.0	5.8e-14	52.5	0.1	3.0	3	1	0	3	3	3	2	Rhodanese-like	domain
Lactamase_B	PF00753.27	gi|410669539|ref|YP_006921910.1|	-	1.2e-08	35.2	2.1	5e-08	33.2	0.7	2.7	2	1	0	2	2	2	1	Metallo-beta-lactamase	superfamily
P53_tetramer	PF07710.11	gi|410669539|ref|YP_006921910.1|	-	0.15	11.5	0.0	0.31	10.4	0.0	1.5	1	0	0	1	1	1	0	P53	tetramerisation	motif
Orn_Arg_deC_N	PF02784.16	gi|410669540|ref|YP_006921911.1|	-	1.9e-52	178.1	0.0	2.4e-52	177.7	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	pyridoxal	binding	domain
Orn_DAP_Arg_deC	PF00278.22	gi|410669540|ref|YP_006921911.1|	-	5.2e-10	39.4	0.0	5.9e-10	39.2	0.0	1.2	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	C-terminal	sheet	domain
NucS	PF01939.16	gi|410669541|ref|YP_006921912.1|	-	3.8e-06	26.4	0.9	7.3e-06	25.5	0.2	1.7	1	1	0	2	2	2	1	Endonuclease	NucS
PALP	PF00291.25	gi|410669542|ref|YP_006921913.1|	-	1.4e-27	96.9	0.0	2.5e-27	96.1	0.0	1.4	1	1	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Thr_synth_N	PF14821.6	gi|410669542|ref|YP_006921913.1|	-	1.6e-19	69.9	0.1	7.9e-19	67.7	0.0	2.2	2	0	0	2	2	2	1	Threonine	synthase	N	terminus
LysE	PF01810.18	gi|410669543|ref|YP_006921914.1|	-	7e-23	81.1	16.0	8.4e-23	80.8	16.0	1.1	1	0	0	1	1	1	1	LysE	type	translocator
SVM_signal	PF12113.8	gi|410669543|ref|YP_006921914.1|	-	0.27	11.2	6.6	0.14	12.1	1.9	2.6	2	0	0	2	2	2	0	SVM	protein	signal	sequence
HisG	PF01634.18	gi|410669544|ref|YP_006921915.1|	-	1.2e-45	155.3	0.0	1.8e-45	154.8	0.0	1.2	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
HisG_C	PF08029.11	gi|410669544|ref|YP_006921915.1|	-	1.3e-26	92.6	0.1	3.1e-26	91.3	0.1	1.7	1	0	0	1	1	1	1	HisG,	C-terminal	domain
Phosphonate-bd	PF12974.7	gi|410669544|ref|YP_006921915.1|	-	0.061	12.9	0.1	0.22	11.1	0.1	2.0	1	1	0	1	1	1	0	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
SDF	PF00375.18	gi|410669545|ref|YP_006921916.1|	-	1.6e-116	389.6	44.7	1.8e-116	389.4	44.7	1.0	1	0	0	1	1	1	1	Sodium:dicarboxylate	symporter	family
Ion_trans_2	PF07885.16	gi|410669547|ref|YP_006921918.1|	-	7.6e-23	80.3	11.1	9.6e-23	80.0	11.1	1.1	1	0	0	1	1	1	1	Ion	channel
Ion_trans	PF00520.31	gi|410669547|ref|YP_006921918.1|	-	0.0029	16.9	3.0	0.0051	16.1	3.0	1.4	1	1	0	1	1	1	1	Ion	transport	protein
DUF2254	PF10011.9	gi|410669547|ref|YP_006921918.1|	-	0.0052	15.6	0.1	0.013	14.4	0.0	1.6	2	0	0	2	2	2	1	Predicted	membrane	protein	(DUF2254)
LapA_dom	PF06305.11	gi|410669547|ref|YP_006921918.1|	-	0.011	15.5	1.4	0.045	13.6	0.1	2.1	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
IRK	PF01007.20	gi|410669547|ref|YP_006921918.1|	-	0.042	13.7	0.2	0.055	13.3	0.2	1.4	1	0	0	1	1	1	0	Inward	rectifier	potassium	channel	transmembrane	domain
Phage_holin_2_3	PF16080.5	gi|410669547|ref|YP_006921918.1|	-	8.1	6.3	7.0	22	4.9	0.3	2.6	2	1	0	2	2	2	0	Bacteriophage	holin	family	HP1
CMD	PF02627.20	gi|410669548|ref|YP_006921919.1|	-	6.9e-19	67.7	0.3	8.1e-19	67.5	0.3	1.1	1	0	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
3HCDH_RFF	PF18321.1	gi|410669548|ref|YP_006921919.1|	-	0.068	13.6	1.1	3.2	8.3	0.1	2.1	1	1	1	2	2	2	0	3-hydroxybutyryl-CoA	dehydrogenase	reduced	Rossmann-fold	domain
URO-D	PF01208.17	gi|410669549|ref|YP_006921920.1|	-	2.9e-75	253.6	0.0	6.5e-57	193.2	0.0	2.0	1	1	1	2	2	2	2	Uroporphyrinogen	decarboxylase	(URO-D)
Maf	PF02545.14	gi|410669550|ref|YP_006921921.1|	-	8.6e-52	175.3	0.0	9.7e-52	175.2	0.0	1.0	1	0	0	1	1	1	1	Maf-like	protein
OppC_N	PF12911.7	gi|410669551|ref|YP_006921922.1|	-	0.025	14.6	1.8	0.025	14.6	1.8	6.1	4	2	1	5	5	5	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
SNF	PF00209.18	gi|410669553|ref|YP_006921924.1|	-	6.9e-53	180.1	26.5	9.2e-30	103.8	8.1	2.2	2	1	0	2	2	2	2	Sodium:neurotransmitter	symporter	family
E1-E2_ATPase	PF00122.20	gi|410669553|ref|YP_006921924.1|	-	0.35	10.4	5.4	0.35	10.4	0.9	2.8	2	0	0	2	2	2	0	E1-E2	ATPase
DUF373	PF04123.13	gi|410669553|ref|YP_006921924.1|	-	2	7.8	9.6	2.8	7.3	6.2	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF373)
DUF1211	PF06736.11	gi|410669553|ref|YP_006921924.1|	-	5.3	7.5	8.6	0.42	11.1	1.9	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1211)
B12-binding_2	PF02607.17	gi|410669554|ref|YP_006921925.1|	-	3.3e-16	59.5	0.9	3.8e-16	59.3	0.9	1.1	1	0	0	1	1	1	1	B12	binding	domain
DUF5633	PF18656.1	gi|410669554|ref|YP_006921925.1|	-	0.062	13.2	0.1	0.11	12.4	0.1	1.4	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5633)
Peptidase_U32	PF01136.19	gi|410669556|ref|YP_006921927.1|	-	2.2e-96	321.5	0.2	1.1e-77	260.3	0.0	2.3	2	0	0	2	2	2	2	Peptidase	family	U32
DUF3656	PF12392.8	gi|410669556|ref|YP_006921927.1|	-	4e-20	72.5	0.1	1.1e-19	71.0	0.1	1.8	1	0	0	1	1	1	1	Collagenase
Radical_SAM	PF04055.21	gi|410669556|ref|YP_006921927.1|	-	0.0012	19.2	0.9	9.9	6.5	0.0	3.8	2	1	1	3	3	3	2	Radical	SAM	superfamily
DUF871	PF05913.11	gi|410669556|ref|YP_006921927.1|	-	0.048	12.9	0.5	12	5.0	0.0	2.9	3	0	0	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF871)
cwf21	PF08312.12	gi|410669556|ref|YP_006921927.1|	-	0.067	13.4	0.4	0.3	11.3	0.2	2.3	2	0	0	2	2	2	0	cwf21	domain
Catalase	PF00199.19	gi|410669557|ref|YP_006921928.1|	-	1.8e-180	600.1	0.1	2.4e-180	599.7	0.1	1.2	1	0	0	1	1	1	1	Catalase
Catalase_C	PF18011.1	gi|410669557|ref|YP_006921928.1|	-	9.4e-23	80.5	0.2	1.5e-22	79.8	0.2	1.4	1	0	0	1	1	1	1	C-terminal	domain	found	in	long	catalases
Catalase-rel	PF06628.12	gi|410669557|ref|YP_006921928.1|	-	1.1e-20	73.6	0.1	1.5e-19	70.0	0.0	2.6	2	0	0	2	2	2	1	Catalase-related	immune-responsive
DJ-1_PfpI	PF01965.24	gi|410669557|ref|YP_006921928.1|	-	1.2e-14	54.5	0.4	1.5e-13	50.9	0.4	2.1	1	1	0	1	1	1	1	DJ-1/PfpI	family
Xan_ur_permease	PF00860.20	gi|410669558|ref|YP_006921929.1|	-	2.6e-37	128.4	45.1	3.2e-37	128.2	45.1	1.2	1	0	0	1	1	1	1	Permease	family
NosD	PF05048.13	gi|410669559|ref|YP_006921930.1|	-	7.4e-46	156.4	102.7	1.8e-17	63.4	37.6	4.6	1	1	2	4	4	4	4	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.6	gi|410669559|ref|YP_006921930.1|	-	1.8e-34	118.9	117.5	9.2e-12	45.1	23.4	4.9	2	2	2	4	4	4	4	Right	handed	beta	helix	region
Pectate_lyase_3	PF12708.7	gi|410669559|ref|YP_006921930.1|	-	0.28	11.0	63.6	0.053	13.4	21.9	5.9	1	1	1	4	4	4	0	Pectate	lyase	superfamily	protein
Gram_pos_anchor	PF00746.21	gi|410669560|ref|YP_006921931.1|	-	0.077	12.9	0.1	0.2	11.6	0.1	1.7	1	1	0	1	1	1	0	LPXTG	cell	wall	anchor	motif
HATPase_c	PF02518.26	gi|410669562|ref|YP_006921933.1|	-	2.7e-20	73.0	0.0	7.2e-20	71.6	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|410669562|ref|YP_006921933.1|	-	1.2e-10	41.5	0.0	3.4e-10	40.1	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|410669562|ref|YP_006921933.1|	-	2.4e-08	34.0	0.0	4.7e-08	33.0	0.0	1.5	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.10	gi|410669562|ref|YP_006921933.1|	-	1.3e-05	25.4	0.0	2.2e-05	24.7	0.0	1.4	1	0	0	1	1	1	1	PAS	fold
HisKA	PF00512.25	gi|410669562|ref|YP_006921933.1|	-	7.5e-05	22.7	1.3	0.00012	22.0	0.3	1.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.7	gi|410669562|ref|YP_006921933.1|	-	0.0002	21.3	0.0	0.00064	19.7	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
HATPase_c_2	PF13581.6	gi|410669562|ref|YP_006921933.1|	-	0.0025	17.8	0.0	0.0057	16.6	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_3	PF08447.12	gi|410669562|ref|YP_006921933.1|	-	0.022	15.1	0.0	0.045	14.0	0.0	1.6	1	0	0	1	1	1	0	PAS	fold
Spore_IV_A	PF09547.10	gi|410669562|ref|YP_006921933.1|	-	0.046	12.7	0.1	3.3	6.5	0.0	2.2	2	0	0	2	2	2	0	Stage	IV	sporulation	protein	A	(spore_IV_A)
AAA_16	PF13191.6	gi|410669562|ref|YP_006921933.1|	-	0.15	12.4	0.4	4.4	7.7	0.4	2.2	1	1	0	1	1	1	0	AAA	ATPase	domain
Peptidase_M1	PF01433.20	gi|410669563|ref|YP_006921934.1|	-	2.3e-05	24.1	1.7	3.1e-05	23.7	0.0	2.2	3	0	0	3	3	3	1	Peptidase	family	M1	domain
Peptidase_M66	PF10462.9	gi|410669563|ref|YP_006921934.1|	-	0.051	12.5	0.2	0.096	11.6	0.2	1.3	1	0	0	1	1	1	0	Peptidase	M66
AMP-binding_C_2	PF14535.6	gi|410669564|ref|YP_006921935.1|	-	3.1e-30	104.3	1.0	1.2e-29	102.5	1.5	1.8	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
AMP-binding	PF00501.28	gi|410669564|ref|YP_006921935.1|	-	6.7e-13	48.0	0.0	4.9e-12	45.2	0.0	2.0	1	1	0	1	1	1	1	AMP-binding	enzyme
DUF2099	PF09872.9	gi|410669565|ref|YP_006921936.1|	-	2.1e-114	381.0	1.5	2.4e-114	380.9	1.5	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2099)
Nucleic_acid_bd	PF13820.6	gi|410669565|ref|YP_006921936.1|	-	0.064	13.1	0.0	0.11	12.3	0.0	1.3	1	0	0	1	1	1	0	Putative	nucleic	acid-binding	region
4HBT	PF03061.22	gi|410669566|ref|YP_006921937.1|	-	5.5e-13	49.1	0.1	8.1e-13	48.5	0.1	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF4442	PF14539.6	gi|410669566|ref|YP_006921937.1|	-	2.7e-07	30.8	0.7	3.7e-07	30.4	0.7	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
PS-DH	PF14765.6	gi|410669566|ref|YP_006921937.1|	-	0.022	14.0	0.1	0.17	11.1	0.1	2.1	2	1	0	2	2	2	0	Polyketide	synthase	dehydratase
4HBT_3	PF13622.6	gi|410669566|ref|YP_006921937.1|	-	0.04	14.2	0.0	0.051	13.8	0.0	1.1	1	0	0	1	1	1	0	Thioesterase-like	superfamily
DUF421	PF04239.12	gi|410669567|ref|YP_006921938.1|	-	1e-11	44.5	0.2	1.8e-11	43.8	0.2	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF421)
YqeY	PF09424.10	gi|410669567|ref|YP_006921938.1|	-	0.078	13.1	0.0	0.11	12.6	0.0	1.2	1	0	0	1	1	1	0	Yqey-like	protein
UPF0086	PF01868.16	gi|410669567|ref|YP_006921938.1|	-	0.11	12.4	0.1	0.31	11.0	0.1	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	UPF0086
Putative_PNPOx	PF01243.20	gi|410669568|ref|YP_006921939.1|	-	2.2e-13	50.2	0.0	2.6e-13	49.9	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.7	gi|410669568|ref|YP_006921939.1|	-	5.6e-11	42.6	0.0	6.3e-11	42.4	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyrid_ox_like	PF16242.5	gi|410669568|ref|YP_006921939.1|	-	6e-10	38.9	0.2	7.7e-10	38.5	0.2	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase	like
Virul_fac_BrkB	PF03631.15	gi|410669569|ref|YP_006921940.1|	-	1.4e-48	165.8	25.1	1.6e-48	165.6	25.1	1.0	1	0	0	1	1	1	1	Virulence	factor	BrkB
Prok-JAB	PF14464.6	gi|410669570|ref|YP_006921941.1|	-	1.9e-10	40.5	0.0	2.7e-10	40.0	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
RadC	PF04002.15	gi|410669570|ref|YP_006921941.1|	-	0.0015	18.4	0.0	0.0022	18.0	0.0	1.4	1	0	0	1	1	1	1	RadC-like	JAB	domain
HATPase_c	PF02518.26	gi|410669571|ref|YP_006921942.1|	-	1.4e-29	102.8	0.0	3.2e-29	101.7	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|410669571|ref|YP_006921942.1|	-	1.2e-14	54.0	0.2	4e-14	52.4	0.1	2.0	1	1	1	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|410669571|ref|YP_006921942.1|	-	5e-11	42.8	0.0	3.6e-05	24.0	0.1	3.2	3	1	0	3	3	3	2	PAS	fold
PAS_9	PF13426.7	gi|410669571|ref|YP_006921942.1|	-	4.4e-10	39.7	0.2	3.2e-05	24.1	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
PAS_8	PF13188.7	gi|410669571|ref|YP_006921942.1|	-	7.3e-10	38.7	0.1	1.3e-07	31.5	0.0	2.6	2	0	0	2	2	2	1	PAS	domain
PAS	PF00989.25	gi|410669571|ref|YP_006921942.1|	-	3.5e-06	27.0	0.0	0.00014	21.8	0.0	2.7	2	0	0	2	2	2	1	PAS	fold
HATPase_c_3	PF13589.6	gi|410669571|ref|YP_006921942.1|	-	4.9e-05	23.2	0.0	0.00013	21.8	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.6	gi|410669571|ref|YP_006921942.1|	-	0.00017	21.4	0.0	0.00057	19.7	0.0	1.9	1	0	0	1	1	1	1	GHKL	domain
PAS_7	PF12860.7	gi|410669571|ref|YP_006921942.1|	-	0.0052	16.9	0.7	2	8.6	0.0	3.8	4	0	0	4	4	4	1	PAS	fold
HATPase_c_2	PF13581.6	gi|410669571|ref|YP_006921942.1|	-	0.019	14.9	0.0	0.039	13.9	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
Integrase_DNA	PF02920.15	gi|410669571|ref|YP_006921942.1|	-	0.059	13.1	0.2	0.13	12.0	0.2	1.5	1	0	0	1	1	1	0	DNA	binding	domain	of	tn916	integrase
PAS_10	PF13596.6	gi|410669571|ref|YP_006921942.1|	-	0.073	13.7	0.0	14	6.3	0.0	2.7	2	0	0	2	2	2	0	PAS	domain
STAT_alpha	PF01017.20	gi|410669571|ref|YP_006921942.1|	-	0.6	10.0	4.6	14	5.6	0.0	2.7	2	1	0	2	2	2	0	STAT	protein,	all-alpha	domain
Aminotran_1_2	PF00155.21	gi|410669572|ref|YP_006921943.1|	-	3.4e-62	210.7	0.0	3.8e-62	210.6	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.20	gi|410669572|ref|YP_006921943.1|	-	0.00016	20.4	0.0	0.00027	19.6	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Alliinase_C	PF04864.13	gi|410669572|ref|YP_006921943.1|	-	0.0074	15.2	0.0	0.025	13.5	0.0	1.8	2	0	0	2	2	2	1	Allinase
Dimeth_Pyl	PF09505.10	gi|410669572|ref|YP_006921943.1|	-	0.027	13.0	0.1	1.8	7.0	0.0	2.3	2	0	0	2	2	2	0	Dimethylamine	methyltransferase	(Dimeth_PyL)
FixQ	PF05545.11	gi|410669573|ref|YP_006921944.1|	-	0.032	14.2	0.4	0.088	12.8	0.4	1.7	1	0	0	1	1	1	0	Cbb3-type	cytochrome	oxidase	component	FixQ
DUF1206	PF06724.11	gi|410669573|ref|YP_006921944.1|	-	0.037	14.1	1.0	0.077	13.1	1.0	1.5	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF1206)
DUF5472	PF17566.2	gi|410669573|ref|YP_006921944.1|	-	1.3	9.0	5.6	4.1	7.4	0.2	2.7	2	1	1	3	3	3	0	Family	of	unknown	function	(DUF5472)
PhoU	PF01895.19	gi|410669574|ref|YP_006921945.1|	-	1.3e-20	73.7	9.4	3e-15	56.5	2.3	2.7	3	0	0	3	3	3	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|410669574|ref|YP_006921945.1|	-	1.3e-07	31.3	0.5	3.3e-07	30.1	0.0	1.9	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
HAMP	PF00672.25	gi|410669574|ref|YP_006921945.1|	-	0.036	14.4	0.0	0.85	10.0	0.0	2.5	2	0	0	2	2	2	0	HAMP	domain
Pilin_N	PF07790.11	gi|410669575|ref|YP_006921946.1|	-	0.0014	19.5	1.8	0.0019	19.1	0.4	2.0	2	0	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
ATPase	PF06745.13	gi|410669576|ref|YP_006921947.1|	-	3.4e-16	59.3	1.4	1.1e-15	57.6	1.4	1.7	1	1	0	1	1	1	1	KaiC
GvpD	PF07088.11	gi|410669576|ref|YP_006921947.1|	-	0.00036	19.3	0.3	0.00062	18.5	0.3	1.3	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
HP0268	PF18618.1	gi|410669576|ref|YP_006921947.1|	-	0.033	14.6	0.0	0.078	13.4	0.0	1.6	1	0	0	1	1	1	0	HP0268
T2SSF	PF00482.23	gi|410669579|ref|YP_006921950.1|	-	2.7e-12	46.8	0.7	2.7e-12	46.8	0.7	2.4	2	0	0	2	2	2	1	Type	II	secretion	system	(T2SS),	protein	F
Invasin_D3	PF09134.10	gi|410669579|ref|YP_006921950.1|	-	1.7e-05	25.1	1.7	1.7e-05	25.1	1.7	1.9	2	0	0	2	2	2	1	Invasin,	domain	3
Big_1	PF02369.16	gi|410669579|ref|YP_006921950.1|	-	5e-05	23.2	2.1	5e-05	23.2	2.1	2.1	3	0	0	3	3	3	1	Bacterial	Ig-like	domain	(group	1)
CarboxypepD_reg	PF13620.6	gi|410669579|ref|YP_006921950.1|	-	7.4e-05	22.9	3.2	0.00011	22.4	2.2	1.8	2	0	0	2	2	2	1	Carboxypeptidase	regulatory-like	domain
MG4	PF17789.1	gi|410669579|ref|YP_006921950.1|	-	0.023	14.8	0.1	0.047	13.8	0.1	1.5	1	0	0	1	1	1	0	Macroglobulin	domain	MG4
Big_3_5	PF16640.5	gi|410669579|ref|YP_006921950.1|	-	0.53	10.5	6.7	0.7	10.1	3.1	2.3	2	0	0	2	2	2	0	Bacterial	Ig-like	domain	(group	3)
T2SSF	PF00482.23	gi|410669580|ref|YP_006921951.1|	-	2.8e-11	43.5	1.1	2.8e-11	43.5	1.1	2.2	2	0	0	2	2	2	1	Type	II	secretion	system	(T2SS),	protein	F
DUF2207	PF09972.9	gi|410669580|ref|YP_006921951.1|	-	0.0086	14.9	4.6	0.37	9.5	0.2	2.2	2	0	0	2	2	2	2	Predicted	membrane	protein	(DUF2207)
DUF2263	PF10021.9	gi|410669580|ref|YP_006921951.1|	-	0.051	13.9	0.0	0.094	13.1	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2263)
Sec62	PF03839.16	gi|410669580|ref|YP_006921951.1|	-	0.095	12.2	0.1	0.095	12.2	0.1	1.9	2	0	0	2	2	2	0	Translocation	protein	Sec62
T2SSE	PF00437.20	gi|410669581|ref|YP_006921952.1|	-	2.5e-44	151.4	0.0	4.3e-44	150.6	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.6	gi|410669581|ref|YP_006921952.1|	-	0.013	15.2	0.3	0.3	10.9	0.0	2.6	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
DUF3945	PF13101.6	gi|410669581|ref|YP_006921952.1|	-	0.042	13.6	0.0	7.9	6.3	0.0	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3945)
FtsK_SpoIIIE	PF01580.18	gi|410669581|ref|YP_006921952.1|	-	0.048	13.0	0.3	1.7	8.0	0.0	2.4	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
Zeta_toxin	PF06414.12	gi|410669581|ref|YP_006921952.1|	-	0.06	12.6	0.0	0.14	11.5	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
BPD_transp_1	PF00528.22	gi|410669582|ref|YP_006921953.1|	-	1.2e-24	87.0	6.7	1.2e-24	87.0	6.7	2.6	1	1	2	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|410669583|ref|YP_006921954.1|	-	1.2e-22	80.5	18.2	1.2e-22	80.5	18.2	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
PBP_like_2	PF12849.7	gi|410669584|ref|YP_006921955.1|	-	1.5e-15	57.6	8.3	2.1e-15	57.1	8.3	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
PBP_like	PF12727.7	gi|410669584|ref|YP_006921955.1|	-	2.7e-08	33.2	0.4	4.4e-08	32.5	0.4	1.3	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_1	PF01547.25	gi|410669584|ref|YP_006921955.1|	-	0.00067	19.7	0.2	0.0026	17.8	0.1	1.9	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
LysR_substrate	PF03466.20	gi|410669584|ref|YP_006921955.1|	-	0.071	12.5	0.0	0.16	11.3	0.0	1.5	1	1	0	1	1	1	0	LysR	substrate	binding	domain
DUF1726	PF08351.11	gi|410669584|ref|YP_006921955.1|	-	0.071	13.1	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1726)
Pilin_N	PF07790.11	gi|410669584|ref|YP_006921955.1|	-	0.35	11.8	10.4	0.14	13.1	6.5	2.4	2	1	0	2	2	2	0	Archaeal	Type	IV	pilin,	N-terminal
LMWPc	PF01451.21	gi|410669585|ref|YP_006921956.1|	-	8.4e-08	32.7	0.0	1e-07	32.4	0.0	1.1	1	0	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
CYTH	PF01928.21	gi|410669586|ref|YP_006921957.1|	-	9.7e-14	51.7	0.0	2.1e-13	50.6	0.0	1.5	1	0	0	1	1	1	1	CYTH	domain
HD	PF01966.22	gi|410669586|ref|YP_006921957.1|	-	0.0037	17.5	0.4	0.007	16.6	0.4	1.5	1	0	0	1	1	1	1	HD	domain
DUF763	PF05559.11	gi|410669586|ref|YP_006921957.1|	-	0.052	12.7	0.0	0.08	12.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF763)
PPK2	PF03976.14	gi|410669587|ref|YP_006921958.1|	-	2.8e-134	445.7	3.9	4.3e-86	288.1	2.5	2.0	2	0	0	2	2	2	2	Polyphosphate	kinase	2	(PPK2)
SKI	PF01202.22	gi|410669587|ref|YP_006921958.1|	-	0.089	12.9	0.3	0.86	9.7	0.1	2.3	2	0	0	2	2	2	0	Shikimate	kinase
AAA_18	PF13238.6	gi|410669587|ref|YP_006921958.1|	-	0.13	12.8	0.6	0.68	10.5	0.2	2.2	2	0	0	2	2	2	0	AAA	domain
Fer4	PF00037.27	gi|410669588|ref|YP_006921959.1|	-	5.2e-16	57.7	16.1	6e-08	32.2	3.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|410669588|ref|YP_006921959.1|	-	1.1e-12	47.9	22.3	6.1e-08	32.7	14.1	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410669588|ref|YP_006921959.1|	-	6.8e-12	45.3	25.1	6.7e-09	35.8	14.2	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410669588|ref|YP_006921959.1|	-	1.4e-11	45.2	8.8	1.8e-06	28.8	0.7	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_7	PF12838.7	gi|410669588|ref|YP_006921959.1|	-	2.7e-10	40.7	23.1	1.8e-07	31.6	13.2	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410669588|ref|YP_006921959.1|	-	8.7e-10	38.3	15.6	6.7e-05	22.8	3.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|410669588|ref|YP_006921959.1|	-	6.1e-09	35.9	12.2	1.1e-08	35.1	12.2	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410669588|ref|YP_006921959.1|	-	1.3e-07	31.3	12.5	0.00016	21.6	2.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|410669588|ref|YP_006921959.1|	-	3.3e-07	30.3	14.4	0.002	18.5	1.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|410669588|ref|YP_006921959.1|	-	7.6e-06	26.3	10.5	0.0041	17.5	0.7	2.3	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410669588|ref|YP_006921959.1|	-	2.6e-05	24.7	12.1	0.016	15.7	2.4	2.4	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|410669588|ref|YP_006921959.1|	-	0.00037	21.2	16.7	0.023	15.6	4.0	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|410669588|ref|YP_006921959.1|	-	0.00059	20.5	7.3	0.12	13.1	0.1	3.1	2	1	1	3	3	3	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|410669588|ref|YP_006921959.1|	-	0.00059	20.3	15.3	0.079	13.5	2.8	2.8	2	1	1	3	3	3	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_18	PF13746.6	gi|410669588|ref|YP_006921959.1|	-	0.002	18.3	15.4	0.021	15.0	13.3	2.5	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|410669588|ref|YP_006921959.1|	-	0.015	16.1	12.5	0.52	11.2	1.6	2.6	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
LcrV	PF04792.12	gi|410669588|ref|YP_006921959.1|	-	0.041	13.2	0.0	0.041	13.2	0.0	1.1	1	0	0	1	1	1	0	V	antigen	(LcrV)	protein
CHAD	PF05235.14	gi|410669589|ref|YP_006921960.1|	-	5.6e-47	160.6	1.4	1e-46	159.8	0.5	1.7	2	0	0	2	2	2	1	CHAD	domain
MIX	PF18529.1	gi|410669589|ref|YP_006921960.1|	-	0.11	12.2	1.3	3.2	7.4	0.0	3.0	3	0	0	3	3	3	0	Mitochondrial	membrane-anchored	proteins
TraF	PF13728.6	gi|410669589|ref|YP_006921960.1|	-	0.13	12.1	0.0	2.1	8.1	0.0	2.6	2	1	1	3	3	3	0	F	plasmid	transfer	operon	protein
Hrs_helical	PF12210.8	gi|410669589|ref|YP_006921960.1|	-	0.4	11.2	3.0	19	5.9	0.4	2.8	3	0	0	3	3	3	0	Hepatocyte	growth	factor-regulated	tyrosine	kinase	substrate
PP_kinase_C	PF13090.6	gi|410669590|ref|YP_006921961.1|	-	1.6e-70	236.1	1.2	3.2e-70	235.1	1.2	1.5	1	0	0	1	1	1	1	Polyphosphate	kinase	C-terminal	domain	2
PP_kinase_C_1	PF17941.1	gi|410669590|ref|YP_006921961.1|	-	3.8e-67	225.0	0.1	7.1e-67	224.1	0.1	1.5	1	0	0	1	1	1	1	Polyphosphate	kinase	C-terminal	domain	1
PP_kinase	PF02503.17	gi|410669590|ref|YP_006921961.1|	-	1.5e-47	161.8	0.3	2.8e-47	160.9	0.3	1.5	1	0	0	1	1	1	1	Polyphosphate	kinase	middle	domain
PP_kinase_N	PF13089.6	gi|410669590|ref|YP_006921961.1|	-	1.1e-35	122.2	0.0	3.9e-35	120.4	0.0	2.0	1	0	0	1	1	1	1	Polyphosphate	kinase	N-terminal	domain
PLDc_2	PF13091.6	gi|410669590|ref|YP_006921961.1|	-	2.3e-13	50.2	0.1	4e-07	30.0	0.0	3.2	3	1	0	3	3	3	2	PLD-like	domain
Pyr_redox	PF00070.27	gi|410669590|ref|YP_006921961.1|	-	0.0082	16.7	0.3	3.6	8.2	0.0	2.9	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Ppx-GppA	PF02541.16	gi|410669591|ref|YP_006921962.1|	-	2.3e-35	122.4	0.0	4.4e-35	121.5	0.0	1.4	1	1	0	1	1	1	1	Ppx/GppA	phosphatase	family
EutA	PF06277.11	gi|410669591|ref|YP_006921962.1|	-	0.00099	18.1	0.2	0.0026	16.7	0.2	1.7	1	1	0	1	1	1	1	Ethanolamine	utilisation	protein	EutA
FtsA	PF14450.6	gi|410669591|ref|YP_006921962.1|	-	0.042	14.3	0.0	0.44	11.0	0.0	2.4	2	0	0	2	2	2	0	Cell	division	protein	FtsA
DUF11	PF01345.18	gi|410669592|ref|YP_006921963.1|	-	7e-07	29.5	0.7	0.071	13.4	0.0	3.2	3	1	0	3	3	3	2	Domain	of	unknown	function	DUF11
CARDB	PF07705.11	gi|410669592|ref|YP_006921963.1|	-	0.0086	16.3	0.1	0.14	12.4	0.1	2.9	3	0	0	3	3	3	1	CARDB
Top6b_C	PF18000.1	gi|410669592|ref|YP_006921963.1|	-	0.02	15.0	0.1	0.35	11.0	0.0	2.6	2	0	0	2	2	2	0	Type	2	DNA	topoisomerase	6	subunit	B	C-terminal	domain
Chitin_bind_4	PF00379.23	gi|410669592|ref|YP_006921963.1|	-	0.077	13.5	1.2	0.2	12.2	0.1	2.3	2	0	0	2	2	2	0	Insect	cuticle	protein
COX2-transmemb	PF09125.10	gi|410669593|ref|YP_006921964.1|	-	0.8	9.5	7.9	0.19	11.6	3.7	1.9	1	1	1	2	2	2	0	Cytochrome	C	oxidase	subunit	II,	transmembrane
CbtB	PF09489.10	gi|410669593|ref|YP_006921964.1|	-	4.6	7.4	6.7	2.6	8.2	2.3	2.0	1	1	1	2	2	2	0	Probable	cobalt	transporter	subunit	(CbtB)
TNFR_16_TM	PF18422.1	gi|410669593|ref|YP_006921964.1|	-	6.7	6.8	8.2	11	6.1	3.1	2.6	2	1	0	2	2	2	0	Tumor	necrosis	factor	receptor	member	16	trans-membrane	domain
DUF2721	PF11026.8	gi|410669594|ref|YP_006921965.1|	-	2.5	8.0	9.5	1.3	8.9	6.8	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2721)
DUF4227	PF14004.6	gi|410669594|ref|YP_006921965.1|	-	5.6	7.0	7.6	15	5.7	0.3	2.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4227)
PhoU	PF01895.19	gi|410669595|ref|YP_006921966.1|	-	1.4e-19	70.3	10.5	3.1e-18	66.0	1.7	3.1	2	1	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|410669595|ref|YP_006921966.1|	-	2.6e-08	33.6	0.1	9.5e-08	31.8	0.1	2.1	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
Chorismate_synt	PF01264.21	gi|410669596|ref|YP_006921967.1|	-	1.5e-143	477.5	1.1	1.6e-143	477.3	1.1	1.0	1	0	0	1	1	1	1	Chorismate	synthase
Melittin	PF01372.17	gi|410669596|ref|YP_006921967.1|	-	0.8	9.8	5.1	3.6	7.7	0.8	3.4	3	0	0	3	3	3	0	Melittin
Cation_efflux	PF01545.21	gi|410669597|ref|YP_006921968.1|	-	2.1e-47	161.4	7.6	2.5e-47	161.2	7.6	1.1	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|410669597|ref|YP_006921968.1|	-	7.4e-22	77.3	0.7	1.3e-21	76.5	0.7	1.4	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
DAGK_prokar	PF01219.19	gi|410669597|ref|YP_006921968.1|	-	0.0077	16.0	2.7	0.044	13.6	0.0	2.6	3	0	0	3	3	3	1	Prokaryotic	diacylglycerol	kinase
MHYT	PF03707.16	gi|410669597|ref|YP_006921968.1|	-	0.34	11.1	2.9	29	4.9	1.3	2.8	2	0	0	2	2	2	0	Bacterial	signalling	protein	N	terminal	repeat
FGE-sulfatase	PF03781.16	gi|410669599|ref|YP_006921970.1|	-	7e-56	189.7	6.4	6.5e-55	186.5	6.4	1.9	1	1	0	1	1	1	1	Sulfatase-modifying	factor	enzyme	1
FSAP_sig_propep	PF03032.15	gi|410669599|ref|YP_006921970.1|	-	0.12	12.4	0.1	0.24	11.5	0.1	1.4	1	0	0	1	1	1	0	Frog	skin	active	peptide	family	signal	and	propeptide
CbiA	PF01656.23	gi|410669600|ref|YP_006921971.1|	-	2.7e-22	79.2	0.0	3.4e-22	78.9	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|410669600|ref|YP_006921971.1|	-	1.3e-11	44.8	0.0	3.8e-11	43.2	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
ParA	PF10609.9	gi|410669600|ref|YP_006921971.1|	-	1.5e-09	37.7	0.8	1.4e-07	31.2	0.8	2.9	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|410669600|ref|YP_006921971.1|	-	1.4e-08	34.3	0.2	3.6e-08	33.0	0.0	1.7	2	0	0	2	2	2	1	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|410669600|ref|YP_006921971.1|	-	2.7e-07	30.3	0.0	8e-05	22.2	0.2	2.1	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
AAA_26	PF13500.6	gi|410669600|ref|YP_006921971.1|	-	4.3e-06	26.7	1.1	0.00021	21.2	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
Fer4_NifH	PF00142.18	gi|410669600|ref|YP_006921971.1|	-	1.4e-05	24.7	0.1	0.00025	20.6	0.1	2.1	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_24	PF13479.6	gi|410669600|ref|YP_006921971.1|	-	0.00047	19.9	0.1	0.0017	18.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
NTPase_1	PF03266.15	gi|410669600|ref|YP_006921971.1|	-	0.0012	18.8	0.1	0.0021	18.0	0.1	1.4	1	0	0	1	1	1	1	NTPase
AAA_18	PF13238.6	gi|410669600|ref|YP_006921971.1|	-	0.0012	19.4	0.0	0.0019	18.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
SRP54	PF00448.22	gi|410669600|ref|YP_006921971.1|	-	0.0024	17.5	0.4	0.0041	16.8	0.4	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_30	PF13604.6	gi|410669600|ref|YP_006921971.1|	-	0.0038	17.0	0.2	0.0089	15.8	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
CLP1_P	PF16575.5	gi|410669600|ref|YP_006921971.1|	-	0.0048	16.7	0.0	0.016	15.0	0.0	1.9	2	1	0	2	2	2	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
MeaB	PF03308.16	gi|410669600|ref|YP_006921971.1|	-	0.0061	15.6	0.2	0.0086	15.1	0.2	1.3	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_16	PF13191.6	gi|410669600|ref|YP_006921971.1|	-	0.009	16.4	0.0	0.016	15.6	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
APS_kinase	PF01583.20	gi|410669600|ref|YP_006921971.1|	-	0.013	15.4	0.1	0.019	14.9	0.1	1.3	1	0	0	1	1	1	0	Adenylylsulphate	kinase
DUF87	PF01935.17	gi|410669600|ref|YP_006921971.1|	-	0.015	15.4	0.0	0.027	14.6	0.0	1.5	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
PRK	PF00485.18	gi|410669600|ref|YP_006921971.1|	-	0.031	14.0	0.0	0.052	13.3	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
IstB_IS21	PF01695.17	gi|410669600|ref|YP_006921971.1|	-	0.048	13.4	0.1	0.084	12.6	0.1	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
MobB	PF03205.14	gi|410669600|ref|YP_006921971.1|	-	0.049	13.5	0.0	0.088	12.7	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
MipZ	PF09140.11	gi|410669600|ref|YP_006921971.1|	-	0.049	12.9	0.3	0.094	12.0	0.3	1.4	1	0	0	1	1	1	0	ATPase	MipZ
AAA_33	PF13671.6	gi|410669600|ref|YP_006921971.1|	-	0.054	13.7	0.0	0.088	13.0	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|410669600|ref|YP_006921971.1|	-	0.057	13.6	0.0	0.09	13.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|410669600|ref|YP_006921971.1|	-	0.06	13.4	0.0	0.1	12.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
NACHT	PF05729.12	gi|410669600|ref|YP_006921971.1|	-	0.098	12.6	0.2	0.18	11.7	0.2	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_2	PF07724.14	gi|410669600|ref|YP_006921971.1|	-	0.13	12.4	0.0	0.19	11.8	0.0	1.3	1	0	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
KTI12	PF08433.10	gi|410669600|ref|YP_006921971.1|	-	0.16	11.4	0.0	0.23	10.9	0.0	1.2	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
NB-ARC	PF00931.22	gi|410669600|ref|YP_006921971.1|	-	0.17	11.0	0.3	0.36	10.0	0.3	1.5	2	0	0	2	2	2	0	NB-ARC	domain
AAA_22	PF13401.6	gi|410669600|ref|YP_006921971.1|	-	0.18	12.1	0.0	0.42	10.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Cupin_2	PF07883.11	gi|410669601|ref|YP_006921972.1|	-	1.6e-12	47.0	0.1	3.4e-12	45.9	0.1	1.6	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|410669601|ref|YP_006921972.1|	-	3.6e-06	26.9	0.3	5.8e-06	26.2	0.3	1.3	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
MannoseP_isomer	PF01050.18	gi|410669601|ref|YP_006921972.1|	-	1.6e-05	24.8	0.0	5.1e-05	23.2	0.0	1.6	1	1	1	2	2	2	1	Mannose-6-phosphate	isomerase
Cupin_1	PF00190.22	gi|410669601|ref|YP_006921972.1|	-	0.0011	18.5	0.0	0.0013	18.3	0.0	1.1	1	0	0	1	1	1	1	Cupin
Ectoine_synth	PF06339.12	gi|410669601|ref|YP_006921972.1|	-	0.008	16.4	0.2	0.0099	16.1	0.2	1.1	1	0	0	1	1	1	1	Ectoine	synthase
DMSP_lyase	PF16867.5	gi|410669601|ref|YP_006921972.1|	-	0.066	12.9	0.0	0.091	12.4	0.0	1.2	1	0	0	1	1	1	0	Dimethlysulfonioproprionate	lyase
QRPTase_N	PF02749.16	gi|410669601|ref|YP_006921972.1|	-	0.12	12.4	0.0	0.19	11.8	0.0	1.4	1	0	0	1	1	1	0	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
PGF-CTERM	PF18204.1	gi|410669603|ref|YP_006921973.1|	-	3.3e-08	33.2	0.6	5e-08	32.6	0.6	1.3	1	0	0	1	1	1	1	PGF-CTERM	motif
DUF4366	PF14283.6	gi|410669603|ref|YP_006921973.1|	-	0.055	13.5	0.0	0.066	13.3	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4366)
DUF1724	PF08350.10	gi|410669606|ref|YP_006921977.1|	-	1.1e-18	67.1	0.6	2.4e-18	66.0	0.6	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
HTH_20	PF12840.7	gi|410669606|ref|YP_006921977.1|	-	0.18	11.9	0.1	0.36	10.9	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
TctA	PF01970.16	gi|410669607|ref|YP_006921978.1|	-	3.3e-76	256.6	36.7	3.8e-76	256.4	36.7	1.0	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctA	family
ATP_bind_3	PF01171.20	gi|410669608|ref|YP_006921979.1|	-	2.3e-10	40.5	0.0	3.7e-10	39.9	0.0	1.3	1	0	0	1	1	1	1	PP-loop	family
NAD_synthase	PF02540.17	gi|410669608|ref|YP_006921979.1|	-	0.00011	21.4	0.0	0.00015	21.0	0.0	1.1	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|410669608|ref|YP_006921979.1|	-	0.00026	19.9	0.0	0.00042	19.2	0.0	1.4	1	0	0	1	1	1	1	tRNA	methyl	transferase
PAPS_reduct	PF01507.19	gi|410669608|ref|YP_006921979.1|	-	0.00049	20.2	0.0	0.00093	19.3	0.0	1.4	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
IL8	PF00048.20	gi|410669608|ref|YP_006921979.1|	-	0.0083	16.3	0.1	0.019	15.1	0.1	1.6	1	0	0	1	1	1	1	Small	cytokines	(intecrine/chemokine),	interleukin-8	like
FAM47	PF14642.6	gi|410669608|ref|YP_006921979.1|	-	0.21	11.1	0.0	0.34	10.4	0.0	1.3	1	0	0	1	1	1	0	FAM47	family
DUF2061	PF09834.9	gi|410669609|ref|YP_006921980.1|	-	0.0049	17.3	0.5	0.0049	17.3	0.5	3.6	3	0	0	3	3	3	1	Predicted	membrane	protein	(DUF2061)
DDOST_48kD	PF03345.14	gi|410669609|ref|YP_006921980.1|	-	0.12	11.2	1.3	0.18	10.6	1.3	1.2	1	0	0	1	1	1	0	Oligosaccharyltransferase	48	kDa	subunit	beta
H_PPase	PF03030.16	gi|410669611|ref|YP_006921982.1|	-	2.3e-269	895.6	54.7	2.6e-269	895.4	54.7	1.0	1	0	0	1	1	1	1	Inorganic	H+	pyrophosphatase
Pterin_bind	PF00809.22	gi|410669613|ref|YP_006921984.1|	-	1.3e-08	34.8	0.3	6.5e-08	32.5	0.3	2.0	1	1	0	1	1	1	1	Pterin	binding	enzyme
DUF4346	PF14251.6	gi|410669613|ref|YP_006921984.1|	-	1.7e-08	34.5	0.0	4.8e-08	33.0	0.0	1.8	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4346)
CdhD	PF03599.16	gi|410669613|ref|YP_006921984.1|	-	0.00037	19.3	0.0	0.00052	18.8	0.0	1.2	1	0	0	1	1	1	1	CO	dehydrogenase/acetyl-CoA	synthase	delta	subunit
Tubulin	PF00091.25	gi|410669614|ref|YP_006921985.1|	-	2.3e-38	132.4	0.2	4.3e-38	131.5	0.2	1.5	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
FtsZ_C	PF12327.8	gi|410669614|ref|YP_006921985.1|	-	4.1e-34	116.7	0.6	2.1e-33	114.5	0.1	2.4	2	0	0	2	2	2	1	FtsZ	family,	C-terminal	domain
ThiF	PF00899.21	gi|410669614|ref|YP_006921985.1|	-	0.054	12.8	0.0	0.16	11.3	0.0	1.8	2	0	0	2	2	2	0	ThiF	family
Peptidase_M50	PF02163.22	gi|410669615|ref|YP_006921986.1|	-	4e-22	78.7	0.0	9.4e-21	74.2	0.0	2.1	1	1	0	1	1	1	1	Peptidase	family	M50
PDZ_2	PF13180.6	gi|410669615|ref|YP_006921986.1|	-	2.6e-15	56.5	0.1	2.7e-06	27.6	0.0	2.5	1	1	1	2	2	2	2	PDZ	domain
PDZ_6	PF17820.1	gi|410669615|ref|YP_006921986.1|	-	1.3e-12	47.3	0.0	2.3e-06	27.4	0.0	2.4	2	0	0	2	2	2	2	PDZ	domain
PDZ	PF00595.24	gi|410669615|ref|YP_006921986.1|	-	6.5e-08	32.8	0.1	0.0071	16.7	0.0	2.9	3	0	0	3	3	3	2	PDZ	domain
Tricorn_PDZ	PF14685.6	gi|410669615|ref|YP_006921986.1|	-	0.00031	20.6	0.2	0.17	11.9	0.0	2.3	2	0	0	2	2	2	2	Tricorn	protease	PDZ	domain
TrkA_N	PF02254.18	gi|410669616|ref|YP_006921987.1|	-	7.6e-23	81.0	3.2	1.1e-22	80.5	3.2	1.2	1	0	0	1	1	1	1	TrkA-N	domain
Ion_trans_2	PF07885.16	gi|410669616|ref|YP_006921987.1|	-	1.2e-13	50.8	7.7	2.2e-13	50.0	7.7	1.3	1	0	0	1	1	1	1	Ion	channel
TrkA_C	PF02080.21	gi|410669616|ref|YP_006921987.1|	-	7.4e-10	38.5	0.0	5e-09	35.9	0.0	2.2	2	0	0	2	2	2	1	TrkA-C	domain
Ion_trans	PF00520.31	gi|410669616|ref|YP_006921987.1|	-	0.0031	16.8	7.6	0.0048	16.1	7.6	1.2	1	0	0	1	1	1	1	Ion	transport	protein
EAV_GS	PF01309.18	gi|410669616|ref|YP_006921987.1|	-	0.012	15.3	1.0	0.35	10.5	0.4	2.1	2	0	0	2	2	2	0	Equine	arteritis	virus	small	envelope	glycoprotein
Sigma_reg_N	PF13800.6	gi|410669616|ref|YP_006921987.1|	-	0.46	10.8	3.6	1.5	9.2	0.6	2.9	3	0	0	3	3	3	0	Sigma	factor	regulator	N-terminal
DUF5090	PF17009.5	gi|410669616|ref|YP_006921987.1|	-	0.56	10.1	3.7	1	9.3	3.7	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5090)
DUF2101	PF09874.9	gi|410669616|ref|YP_006921987.1|	-	2.9	7.6	6.2	5.5	6.6	6.2	1.4	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2101)
TrkA_N	PF02254.18	gi|410669617|ref|YP_006921988.1|	-	2.9e-28	98.5	0.2	4.6e-28	97.8	0.2	1.3	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|410669617|ref|YP_006921988.1|	-	3.4e-09	36.4	0.1	9.3e-09	35.0	0.1	1.8	1	0	0	1	1	1	1	TrkA-C	domain
AdoHcyase_NAD	PF00670.21	gi|410669617|ref|YP_006921988.1|	-	0.0094	16.0	0.6	0.015	15.4	0.1	1.7	2	1	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|410669617|ref|YP_006921988.1|	-	0.0097	15.3	0.0	0.018	14.4	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|410669617|ref|YP_006921988.1|	-	0.015	15.8	0.0	0.026	15.0	0.0	1.5	1	1	0	1	1	1	0	XdhC	Rossmann	domain
ThiF	PF00899.21	gi|410669617|ref|YP_006921988.1|	-	0.18	11.2	1.5	0.86	8.9	0.1	2.0	1	1	1	2	2	2	0	ThiF	family
TauE	PF01925.19	gi|410669618|ref|YP_006921989.1|	-	3.5e-45	154.5	39.0	3.9e-45	154.3	39.0	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
tRNA_synthFbeta	PF17759.1	gi|410669619|ref|YP_006921990.1|	-	3e-26	92.2	0.1	5.3e-26	91.4	0.1	1.4	1	0	0	1	1	1	1	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
B5	PF03484.15	gi|410669619|ref|YP_006921990.1|	-	1e-16	61.0	0.6	5.7e-16	58.6	0.1	2.4	2	0	0	2	2	2	1	tRNA	synthetase	B5	domain
B3_4	PF03483.17	gi|410669619|ref|YP_006921990.1|	-	4.2e-14	52.6	0.0	9e-14	51.5	0.0	1.5	2	0	0	2	2	2	1	B3/4	domain
tRNA-synt_2d	PF01409.20	gi|410669619|ref|YP_006921990.1|	-	0.00037	20.1	0.0	0.0018	17.8	0.0	2.1	2	0	0	2	2	2	1	tRNA	synthetases	class	II	core	domain	(F)
PhetRS_B1	PF18262.1	gi|410669619|ref|YP_006921990.1|	-	0.0026	18.0	0.0	0.33	11.2	0.0	2.8	2	1	1	3	3	3	1	Phe-tRNA	synthetase	beta	subunit	B1	domain
RuvA_N	PF01330.21	gi|410669619|ref|YP_006921990.1|	-	0.11	12.6	0.3	0.31	11.2	0.3	1.7	1	0	0	1	1	1	0	RuvA	N	terminal	domain
AAR2	PF05282.11	gi|410669620|ref|YP_006921991.1|	-	0.19	11.1	1.3	0.23	10.8	1.3	1.0	1	0	0	1	1	1	0	AAR2	protein
T2SSE	PF00437.20	gi|410669621|ref|YP_006921992.1|	-	9e-49	166.0	0.2	2.2e-48	164.7	0.0	1.7	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
T2SSF	PF00482.23	gi|410669622|ref|YP_006921993.1|	-	4.9e-35	120.2	1.1	9.6e-19	67.6	0.0	4.9	5	0	0	5	5	5	2	Type	II	secretion	system	(T2SS),	protein	F
RNase_HII	PF01351.18	gi|410669623|ref|YP_006921994.1|	-	1.4e-51	175.1	0.0	1.6e-51	175.0	0.0	1.0	1	0	0	1	1	1	1	Ribonuclease	HII
PKD	PF00801.20	gi|410669625|ref|YP_006921996.1|	-	7.3e-17	61.0	10.9	4.6e-12	45.6	1.4	4.8	4	0	0	4	4	4	2	PKD	domain
Big_3_3	PF13750.6	gi|410669625|ref|YP_006921996.1|	-	7e-10	38.8	10.8	1.3e-05	24.9	0.0	4.8	6	0	0	6	6	6	2	Bacterial	Ig-like	domain	(group	3)
FlgD_ig	PF13860.6	gi|410669625|ref|YP_006921996.1|	-	1.4e-07	31.3	7.9	0.00031	20.5	0.0	4.9	5	1	0	5	5	5	3	FlgD	Ig-like	domain
Big_3_5	PF16640.5	gi|410669625|ref|YP_006921996.1|	-	0.012	15.8	1.2	0.012	15.8	1.2	5.2	4	2	0	4	4	4	0	Bacterial	Ig-like	domain	(group	3)
DUF2271	PF10029.9	gi|410669625|ref|YP_006921996.1|	-	0.062	12.9	0.2	1.2	8.7	0.0	2.9	3	0	0	3	3	3	0	Predicted	periplasmic	protein	(DUF2271)
GATase_5	PF13507.6	gi|410669626|ref|YP_006921997.1|	-	1.8e-45	155.1	0.0	2.1e-45	154.8	0.0	1.1	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
DJ-1_PfpI	PF01965.24	gi|410669626|ref|YP_006921997.1|	-	1.1e-10	41.6	0.0	1.5e-10	41.1	0.0	1.2	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase_3	PF07685.14	gi|410669626|ref|YP_006921997.1|	-	3.6e-09	36.5	0.2	2.4e-08	33.8	0.0	2.1	2	1	0	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.28	gi|410669626|ref|YP_006921997.1|	-	4.2e-08	33.2	0.0	9.6e-08	32.0	0.0	1.6	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
SNO	PF01174.19	gi|410669626|ref|YP_006921997.1|	-	0.00012	22.0	0.0	0.00086	19.2	0.0	1.9	2	0	0	2	2	2	1	SNO	glutamine	amidotransferase	family
Peptidase_C26	PF07722.13	gi|410669626|ref|YP_006921997.1|	-	0.0013	18.5	0.0	0.0043	16.8	0.0	1.8	1	1	0	1	1	1	1	Peptidase	C26
PurS	PF02700.14	gi|410669627|ref|YP_006921998.1|	-	4.6e-27	94.0	0.2	5.1e-27	93.9	0.2	1.0	1	0	0	1	1	1	1	Phosphoribosylformylglycinamidine	(FGAM)	synthase
HTH_57	PF18679.1	gi|410669627|ref|YP_006921998.1|	-	0.069	13.5	0.0	0.082	13.2	0.0	1.1	1	0	0	1	1	1	0	ThcOx	helix	turn	helix	domain
UPF0180	PF03698.13	gi|410669627|ref|YP_006921998.1|	-	0.075	13.2	0.0	0.099	12.8	0.0	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0180)
DUF3489	PF11994.8	gi|410669627|ref|YP_006921998.1|	-	0.088	12.9	0.0	0.12	12.4	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3489)
ThiS	PF02597.20	gi|410669627|ref|YP_006921998.1|	-	0.12	13.1	0.0	0.21	12.2	0.0	1.5	1	1	0	1	1	1	0	ThiS	family
CDP-OH_P_transf	PF01066.21	gi|410669628|ref|YP_006921999.1|	-	4.6e-13	49.7	4.9	4.6e-13	49.7	4.9	2.5	2	1	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
DUF5518	PF17647.1	gi|410669628|ref|YP_006921999.1|	-	0.4	10.8	18.2	0.22	11.7	0.6	3.3	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5518)
Diphthami_syn_2	PF01902.17	gi|410669630|ref|YP_006922001.1|	-	5.7e-72	241.8	1.1	4.1e-70	235.7	0.6	3.2	3	0	0	3	3	3	1	Diphthamide	synthase
Asn_synthase	PF00733.21	gi|410669630|ref|YP_006922001.1|	-	9.8e-50	170.2	0.2	1.3e-43	150.1	0.2	3.1	1	1	1	2	2	2	1	Asparagine	synthase
GATase_7	PF13537.6	gi|410669630|ref|YP_006922001.1|	-	4e-14	52.6	0.1	2.5e-13	50.0	0.1	2.3	1	1	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.6	gi|410669630|ref|YP_006922001.1|	-	4e-07	30.3	0.0	1.9e-06	28.1	0.0	2.2	1	1	0	1	1	1	1	Glutamine	amidotransferase	domain
NAD_synthase	PF02540.17	gi|410669630|ref|YP_006922001.1|	-	0.00062	19.0	0.0	0.0048	16.0	0.0	2.2	1	1	0	2	2	2	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|410669630|ref|YP_006922001.1|	-	0.00096	18.0	0.0	0.52	9.1	0.0	2.3	2	0	0	2	2	2	2	tRNA	methyl	transferase
QueC	PF06508.13	gi|410669630|ref|YP_006922001.1|	-	0.0022	17.5	0.0	0.67	9.4	0.0	3.2	3	0	0	3	3	3	1	Queuosine	biosynthesis	protein	QueC
DUF3825	PF12873.7	gi|410669630|ref|YP_006922001.1|	-	0.018	14.5	0.0	0.036	13.5	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3825)
Rho_N	PF07498.12	gi|410669630|ref|YP_006922001.1|	-	0.26	11.2	3.3	2.3	8.2	0.3	3.5	3	0	0	3	3	3	0	Rho	termination	factor,	N-terminal	domain
Nramp	PF01566.18	gi|410669632|ref|YP_006922003.1|	-	2.5e-08	33.3	24.0	3.8e-08	32.7	24.0	1.2	1	0	0	1	1	1	1	Natural	resistance-associated	macrophage	protein
DUF3188	PF11384.8	gi|410669632|ref|YP_006922003.1|	-	0.45	10.3	5.3	0.55	10.0	1.7	3.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3188)
DUF4407	PF14362.6	gi|410669632|ref|YP_006922003.1|	-	5.2	6.3	4.5	13	5.1	4.5	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
DUF4231	PF14015.6	gi|410669632|ref|YP_006922003.1|	-	6.5	7.3	10.8	6.8	7.2	0.5	3.5	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF4231)
LrgA	PF03788.14	gi|410669633|ref|YP_006922004.1|	-	5e-30	103.3	10.7	6e-30	103.0	10.7	1.1	1	0	0	1	1	1	1	LrgA	family
Sigma_M_inh	PF17453.2	gi|410669633|ref|YP_006922004.1|	-	0.13	12.8	5.0	0.21	12.1	5.0	1.4	1	0	0	1	1	1	0	Sigma-M	inhibitor
TcpE	PF12648.7	gi|410669633|ref|YP_006922004.1|	-	6.1	7.4	8.7	15	6.1	8.2	1.9	1	1	0	1	1	1	0	TcpE	family
LrgB	PF04172.16	gi|410669634|ref|YP_006922005.1|	-	3.8e-80	268.4	14.1	4.6e-80	268.1	14.1	1.1	1	0	0	1	1	1	1	LrgB-like	family
XPG_I	PF00867.18	gi|410669636|ref|YP_006922007.1|	-	9.7e-25	86.8	0.0	1.8e-24	85.9	0.0	1.5	1	0	0	1	1	1	1	XPG	I-region
XPG_N	PF00752.17	gi|410669636|ref|YP_006922007.1|	-	1.5e-22	80.0	0.0	2.6e-22	79.2	0.0	1.4	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.20	gi|410669636|ref|YP_006922007.1|	-	0.0066	17.0	0.0	0.025	15.2	0.0	2.0	2	0	0	2	2	2	1	5'-3'	exonuclease,	C-terminal	SAM	fold
CPBP	PF02517.16	gi|410669637|ref|YP_006922008.1|	-	2.7e-10	40.5	5.0	2.7e-10	40.5	5.0	2.0	2	1	0	2	2	2	1	CPBP	intramembrane	metalloprotease
DUF4407	PF14362.6	gi|410669637|ref|YP_006922008.1|	-	0.0013	18.1	0.4	0.0036	16.7	0.4	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
Deltameth_res	PF16020.5	gi|410669637|ref|YP_006922008.1|	-	1.3	8.9	6.5	19	5.2	0.7	3.4	3	0	0	3	3	3	0	Deltamethrin	resistance
Na_Ca_ex	PF01699.24	gi|410669638|ref|YP_006922009.1|	-	0.028	14.4	12.4	0.032	14.2	12.4	1.0	1	0	0	1	1	1	0	Sodium/calcium	exchanger	protein
DUF3566	PF12089.8	gi|410669638|ref|YP_006922009.1|	-	0.14	12.6	13.6	3.3	8.1	12.6	2.4	1	1	1	2	2	2	0	Transmembrane	domain	of	unknown	function	(DUF3566)
DUF5326	PF17260.2	gi|410669638|ref|YP_006922009.1|	-	3.2	7.9	13.6	2.6	8.3	1.5	2.2	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5326)
DUF86	PF01934.17	gi|410669639|ref|YP_006922010.1|	-	3.8e-10	39.7	0.1	4.3e-10	39.5	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
NTP_transf_2	PF01909.23	gi|410669640|ref|YP_006922011.1|	-	2.6e-11	43.7	0.0	2.9e-11	43.5	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|410669640|ref|YP_006922011.1|	-	5.6e-09	36.0	0.0	6.2e-09	35.8	0.0	1.1	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
DNA_pol_B_palm	PF14792.6	gi|410669640|ref|YP_006922011.1|	-	0.044	14.0	0.0	0.049	13.8	0.0	1.2	1	0	0	1	1	1	0	DNA	polymerase	beta	palm
ANAPC4_WD40	PF12894.7	gi|410669640|ref|YP_006922011.1|	-	0.14	12.5	0.0	0.15	12.3	0.0	1.1	1	0	0	1	1	1	0	Anaphase-promoting	complex	subunit	4	WD40	domain
HicA_toxin	PF07927.12	gi|410669641|ref|YP_006922012.1|	-	3.5e-17	62.2	0.1	4e-17	62.0	0.1	1.1	1	0	0	1	1	1	1	HicA	toxin	of	bacterial	toxin-antitoxin,
HTH_11	PF08279.12	gi|410669641|ref|YP_006922012.1|	-	0.041	13.8	0.0	0.063	13.2	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
HicB_lk_antitox	PF15919.5	gi|410669642|ref|YP_006922013.1|	-	0.0011	19.1	0.1	0.0012	19.0	0.1	1.1	1	0	0	1	1	1	1	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
Alph_Pro_TM	PF09608.10	gi|410669642|ref|YP_006922013.1|	-	0.023	14.5	0.0	0.023	14.5	0.0	1.1	1	0	0	1	1	1	0	Putative	transmembrane	protein	(Alph_Pro_TM)
TPP_enzyme_C	PF02775.21	gi|410669645|ref|YP_006922016.1|	-	2.3e-41	141.1	0.1	1.1e-40	138.9	0.0	2.0	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|410669645|ref|YP_006922016.1|	-	3.9e-29	101.1	0.0	8.5e-29	100.0	0.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
TPP_enzyme_N	PF02776.18	gi|410669645|ref|YP_006922016.1|	-	1.4e-09	37.8	0.0	3.5e-09	36.5	0.0	1.7	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
AMP-binding_C_2	PF14535.6	gi|410669646|ref|YP_006922017.1|	-	6.8e-27	93.6	0.2	3e-26	91.6	0.2	2.0	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
AMP-binding	PF00501.28	gi|410669646|ref|YP_006922017.1|	-	3.4e-09	35.8	0.0	5.1e-09	35.2	0.0	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
GH3	PF03321.13	gi|410669646|ref|YP_006922017.1|	-	0.00017	20.6	0.0	0.0055	15.6	0.0	2.1	2	0	0	2	2	2	2	GH3	auxin-responsive	promoter
POR	PF01558.18	gi|410669647|ref|YP_006922018.1|	-	4.5e-34	118.0	0.0	5.1e-34	117.9	0.0	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
VirJ	PF06057.11	gi|410669647|ref|YP_006922018.1|	-	0.047	13.6	0.0	0.068	13.0	0.0	1.2	1	0	0	1	1	1	0	Bacterial	virulence	protein	(VirJ)
TPP_enzyme_C	PF02775.21	gi|410669648|ref|YP_006922019.1|	-	6.4e-24	84.5	0.9	1.1e-23	83.7	0.9	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR_N	PF01855.19	gi|410669648|ref|YP_006922019.1|	-	1.4e-16	60.9	0.5	2.2e-16	60.3	0.5	1.3	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Fer4	PF00037.27	gi|410669648|ref|YP_006922019.1|	-	7.7e-09	35.0	15.6	5.9e-06	25.9	2.0	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410669648|ref|YP_006922019.1|	-	7.6e-07	29.2	13.2	0.0012	18.9	2.5	2.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410669648|ref|YP_006922019.1|	-	2.5e-05	24.1	16.4	0.0024	17.9	0.9	3.0	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|410669648|ref|YP_006922019.1|	-	0.00022	21.3	9.4	0.00076	19.6	8.9	2.2	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|410669648|ref|YP_006922019.1|	-	0.0004	20.9	9.2	0.2	12.2	0.4	3.0	3	0	0	3	3	3	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_6	PF12837.7	gi|410669648|ref|YP_006922019.1|	-	0.00041	20.3	17.7	0.011	15.7	2.3	3.5	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|410669648|ref|YP_006922019.1|	-	0.00045	20.7	13.3	0.0072	16.9	1.4	2.8	3	0	0	3	3	2	2	4Fe-4S	dicluster	domain
TPP_enzyme_N	PF02776.18	gi|410669648|ref|YP_006922019.1|	-	0.0033	17.1	0.6	0.0081	15.8	0.3	1.7	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Fer4_10	PF13237.6	gi|410669648|ref|YP_006922019.1|	-	0.0036	17.4	17.2	0.012	15.8	12.9	2.8	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Transket_pyr	PF02779.24	gi|410669648|ref|YP_006922019.1|	-	0.0074	16.0	0.2	0.025	14.3	0.2	1.9	1	1	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Fer4_15	PF13459.6	gi|410669648|ref|YP_006922019.1|	-	0.019	15.7	10.9	0.37	11.5	0.9	2.8	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.6	gi|410669648|ref|YP_006922019.1|	-	0.02	15.8	1.9	0.02	15.8	1.9	2.6	2	0	0	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|410669648|ref|YP_006922019.1|	-	0.046	14.2	8.1	0.42	11.1	1.5	2.7	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410669648|ref|YP_006922019.1|	-	0.17	12.4	18.6	0.72	10.5	1.9	3.3	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Tim17	PF02466.19	gi|410669648|ref|YP_006922019.1|	-	0.22	11.9	3.6	0.7	10.3	0.2	2.8	2	1	1	3	3	3	0	Tim17/Tim22/Tim23/Pmp24	family
Fer4_17	PF13534.6	gi|410669648|ref|YP_006922019.1|	-	1.5	9.4	12.6	0.22	12.1	1.8	2.8	3	0	0	3	3	2	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|410669648|ref|YP_006922019.1|	-	4.7	7.4	10.1	6.4	7.0	8.6	1.9	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
SSF	PF00474.17	gi|410669649|ref|YP_006922020.1|	-	1e-48	166.2	33.8	1.7e-48	165.5	33.8	1.3	1	1	0	1	1	1	1	Sodium:solute	symporter	family
DUF523	PF04463.12	gi|410669652|ref|YP_006922023.1|	-	2.8e-31	108.4	0.0	4.7e-31	107.7	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF523)
DUF1722	PF08349.11	gi|410669652|ref|YP_006922023.1|	-	2e-12	47.4	0.0	3.5e-12	46.6	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1722)
Peptidase_M20	PF01546.28	gi|410669653|ref|YP_006922024.1|	-	3.1e-18	66.2	0.0	4.6e-18	65.7	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|410669653|ref|YP_006922024.1|	-	2.4e-07	30.6	0.1	5.5e-07	29.5	0.1	1.6	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|410669653|ref|YP_006922024.1|	-	0.0018	18.0	0.0	0.0029	17.3	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M28
Peptidase_M42	PF05343.14	gi|410669653|ref|YP_006922024.1|	-	0.099	11.6	0.0	0.86	8.6	0.0	2.1	2	0	0	2	2	2	0	M42	glutamyl	aminopeptidase
Macro	PF01661.21	gi|410669654|ref|YP_006922025.1|	-	6.1e-41	139.2	0.0	7.8e-41	138.8	0.0	1.1	1	0	0	1	1	1	1	Macro	domain
GATase	PF00117.28	gi|410669655|ref|YP_006922026.1|	-	8.1e-20	71.4	0.0	1e-19	71.0	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|410669655|ref|YP_006922026.1|	-	8.1e-08	32.3	0.0	9.6e-08	32.0	0.0	1.2	1	0	0	1	1	1	1	Peptidase	C26
GATase_3	PF07685.14	gi|410669655|ref|YP_006922026.1|	-	6e-05	22.7	0.0	8.2e-05	22.3	0.0	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
DJ-1_PfpI	PF01965.24	gi|410669655|ref|YP_006922026.1|	-	0.0014	18.4	0.0	0.0024	17.7	0.0	1.3	1	0	0	1	1	1	1	DJ-1/PfpI	family
Cohesin	PF00963.18	gi|410669656|ref|YP_006922027.1|	-	1.3e-05	25.5	0.3	1.3e-05	25.5	0.3	2.2	2	1	0	2	2	2	1	Cohesin	domain
Methyltransf_31	PF13847.6	gi|410669657|ref|YP_006922028.1|	-	7.2e-21	74.6	0.0	1e-20	74.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|410669657|ref|YP_006922028.1|	-	7.7e-21	74.6	0.0	1.5e-20	73.7	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410669657|ref|YP_006922028.1|	-	1.8e-20	73.4	0.0	3.6e-20	72.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|410669657|ref|YP_006922028.1|	-	1.4e-17	64.0	0.0	2.6e-17	63.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|410669657|ref|YP_006922028.1|	-	4.6e-15	56.2	0.0	8.1e-15	55.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|410669657|ref|YP_006922028.1|	-	4.7e-15	55.6	0.0	1.3e-14	54.1	0.0	1.7	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
CMAS	PF02353.20	gi|410669657|ref|YP_006922028.1|	-	5.5e-07	29.1	0.0	1.6e-06	27.6	0.0	1.7	1	1	0	2	2	2	1	Mycolic	acid	cyclopropane	synthetase
MTS	PF05175.14	gi|410669657|ref|YP_006922028.1|	-	3e-06	26.9	0.0	5.4e-06	26.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_9	PF08003.11	gi|410669657|ref|YP_006922028.1|	-	1.5e-05	24.1	0.0	2.3e-05	23.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
Methyltransf_4	PF02390.17	gi|410669657|ref|YP_006922028.1|	-	2.1e-05	24.0	0.0	5.3e-05	22.7	0.0	1.7	2	0	0	2	2	2	1	Putative	methyltransferase
Methyltransf_2	PF00891.18	gi|410669657|ref|YP_006922028.1|	-	9.9e-05	21.7	0.3	0.0054	16.1	0.3	2.4	1	1	0	1	1	1	1	O-methyltransferase	domain
Methyltransf_15	PF09445.10	gi|410669657|ref|YP_006922028.1|	-	0.00011	21.8	0.1	0.0002	21.0	0.1	1.4	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
PCMT	PF01135.19	gi|410669657|ref|YP_006922028.1|	-	0.00011	22.0	0.0	0.00018	21.3	0.0	1.4	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_18	PF12847.7	gi|410669657|ref|YP_006922028.1|	-	0.00028	20.9	0.0	0.00047	20.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
NodS	PF05401.11	gi|410669657|ref|YP_006922028.1|	-	0.00028	20.5	0.0	0.00044	19.9	0.0	1.3	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
PrmA	PF06325.13	gi|410669657|ref|YP_006922028.1|	-	0.00037	20.0	0.0	0.00056	19.4	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_8	PF05148.15	gi|410669657|ref|YP_006922028.1|	-	0.00042	20.2	0.0	0.0025	17.7	0.0	2.0	1	1	0	1	1	1	1	Hypothetical	methyltransferase
Methyltransf_29	PF03141.16	gi|410669657|ref|YP_006922028.1|	-	0.0034	16.0	0.0	0.0044	15.6	0.0	1.1	1	0	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
DREV	PF05219.12	gi|410669657|ref|YP_006922028.1|	-	0.0054	15.9	0.0	0.0093	15.1	0.0	1.4	1	0	0	1	1	1	1	DREV	methyltransferase
TrmO	PF01980.16	gi|410669657|ref|YP_006922028.1|	-	0.0058	16.9	0.1	0.069	13.4	0.0	2.6	3	0	0	3	3	3	1	tRNA-methyltransferase	O
UPF0020	PF01170.18	gi|410669657|ref|YP_006922028.1|	-	0.0077	15.9	0.0	0.012	15.3	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_32	PF13679.6	gi|410669657|ref|YP_006922028.1|	-	0.021	14.8	0.0	0.03	14.3	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
MetW	PF07021.12	gi|410669657|ref|YP_006922028.1|	-	0.029	14.0	0.0	0.047	13.3	0.0	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Cons_hypoth95	PF03602.15	gi|410669657|ref|YP_006922028.1|	-	0.044	13.4	0.0	0.23	11.1	0.0	2.0	2	0	0	2	2	2	0	Conserved	hypothetical	protein	95
SSF	PF00474.17	gi|410669659|ref|YP_006922030.1|	-	2.3e-59	201.3	39.9	3e-59	200.9	39.9	1.2	1	0	0	1	1	1	1	Sodium:solute	symporter	family
DUF1056	PF06341.11	gi|410669660|ref|YP_006922031.1|	-	0.07	13.5	0.0	0.083	13.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1056)
SSF	PF00474.17	gi|410669661|ref|YP_006922032.1|	-	1.3e-32	113.2	23.4	1.3e-32	113.2	23.4	1.5	2	0	0	2	2	2	1	Sodium:solute	symporter	family
SSF	PF00474.17	gi|410669662|ref|YP_006922033.1|	-	1.1e-61	208.9	41.2	1.4e-61	208.6	41.2	1.1	1	0	0	1	1	1	1	Sodium:solute	symporter	family
SSF	PF00474.17	gi|410669664|ref|YP_006922035.1|	-	1.7e-61	208.3	40.6	2.3e-61	207.9	40.6	1.2	1	0	0	1	1	1	1	Sodium:solute	symporter	family
Lactamase_B_3	PF13483.6	gi|410669665|ref|YP_006922036.1|	-	5.1e-26	91.5	0.0	6.8e-26	91.1	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|410669665|ref|YP_006922036.1|	-	9.4e-22	77.5	0.4	1.2e-21	77.2	0.4	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|410669665|ref|YP_006922036.1|	-	4.7e-10	39.8	2.1	5.7e-10	39.5	2.1	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
DDE_Tnp_1	PF01609.21	gi|410669666|ref|YP_006922037.1|	-	4.3e-09	36.3	5.9	1.2e-08	34.9	5.9	1.7	1	1	0	1	1	1	1	Transposase	DDE	domain
Methyltransf_31	PF13847.6	gi|410669666|ref|YP_006922037.1|	-	0.078	12.8	0.2	1.5	8.6	0.0	2.5	1	1	0	2	2	2	0	Methyltransferase	domain
DUF2117	PF09890.9	gi|410669667|ref|YP_006922038.1|	-	9.9e-72	240.8	0.1	1.3e-71	240.4	0.1	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2117)
TFIIE_alpha	PF02002.17	gi|410669668|ref|YP_006922039.1|	-	0.02	14.7	0.1	0.026	14.4	0.1	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
TrmB	PF01978.19	gi|410669668|ref|YP_006922039.1|	-	0.023	14.6	0.1	0.046	13.6	0.0	1.6	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_34	PF13601.6	gi|410669668|ref|YP_006922039.1|	-	0.026	14.7	0.0	0.044	14.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
CbiA	PF01656.23	gi|410669672|ref|YP_006922043.1|	-	1e-05	25.6	0.0	4.7e-05	23.4	0.0	1.8	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|410669672|ref|YP_006922043.1|	-	1.4e-05	25.1	0.0	1.8e-05	24.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Fer4_NifH	PF00142.18	gi|410669672|ref|YP_006922043.1|	-	0.0011	18.4	0.0	0.0018	17.8	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ParA	PF10609.9	gi|410669672|ref|YP_006922043.1|	-	0.0016	17.9	0.0	0.04	13.4	0.0	2.5	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
GGDEF	PF00990.21	gi|410669672|ref|YP_006922043.1|	-	0.065	13.0	0.0	0.12	12.2	0.0	1.5	1	0	0	1	1	1	0	Diguanylate	cyclase,	GGDEF	domain
TrmB	PF01978.19	gi|410669673|ref|YP_006922044.1|	-	0.003	17.4	0.1	0.0048	16.8	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
SMC_Nse1	PF07574.13	gi|410669673|ref|YP_006922044.1|	-	0.028	14.3	0.5	3.6	7.4	0.1	2.1	1	1	1	2	2	2	0	Nse1	non-SMC	component	of	SMC5-6	complex
PaaX	PF07848.12	gi|410669673|ref|YP_006922044.1|	-	0.11	12.8	0.2	0.21	11.8	0.2	1.4	1	0	0	1	1	1	0	PaaX-like	protein
ATPase	PF06745.13	gi|410669674|ref|YP_006922045.1|	-	4.7e-29	101.4	0.2	5.9e-29	101.1	0.2	1.1	1	0	0	1	1	1	1	KaiC
GvpD	PF07088.11	gi|410669674|ref|YP_006922045.1|	-	1.3e-05	24.0	0.0	3.3e-05	22.7	0.0	1.5	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
Rad51	PF08423.11	gi|410669674|ref|YP_006922045.1|	-	0.0044	16.3	0.1	0.0054	16.0	0.1	1.4	1	1	0	1	1	1	1	Rad51
AAA_16	PF13191.6	gi|410669674|ref|YP_006922045.1|	-	0.054	13.9	0.1	0.082	13.3	0.1	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
DnaB_C	PF03796.15	gi|410669674|ref|YP_006922045.1|	-	0.058	12.7	0.0	0.088	12.1	0.0	1.4	1	1	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
FtsK_SpoIIIE	PF01580.18	gi|410669674|ref|YP_006922045.1|	-	0.065	12.6	0.3	0.49	9.7	0.2	1.9	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
DUF2075	PF09848.9	gi|410669674|ref|YP_006922045.1|	-	0.065	12.5	0.0	0.084	12.1	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_25	PF13481.6	gi|410669674|ref|YP_006922045.1|	-	0.069	12.7	0.8	0.32	10.5	0.8	2.0	1	1	0	1	1	1	0	AAA	domain
ATP_bind_1	PF03029.17	gi|410669674|ref|YP_006922045.1|	-	0.076	12.8	0.1	0.12	12.1	0.1	1.2	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_24	PF13479.6	gi|410669674|ref|YP_006922045.1|	-	0.077	12.7	0.4	1.2	8.8	0.5	2.5	2	1	0	2	2	2	0	AAA	domain
DUF1846	PF08903.11	gi|410669674|ref|YP_006922045.1|	-	0.15	10.6	0.0	0.26	9.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1846)
NACHT	PF05729.12	gi|410669674|ref|YP_006922045.1|	-	0.17	11.8	0.8	0.56	10.1	0.2	2.0	2	1	1	3	3	3	0	NACHT	domain
Zeta_toxin	PF06414.12	gi|410669674|ref|YP_006922045.1|	-	0.18	11.0	0.0	0.27	10.5	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
Acetyltransf_1	PF00583.25	gi|410669675|ref|YP_006922046.1|	-	8.1e-08	32.5	0.0	1.2e-07	32.0	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|410669675|ref|YP_006922046.1|	-	0.00042	20.7	0.0	0.00084	19.7	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|410669675|ref|YP_006922046.1|	-	0.055	13.4	0.0	0.2	11.6	0.0	1.9	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|410669675|ref|YP_006922046.1|	-	0.079	12.9	0.0	0.16	12.0	0.0	1.5	1	0	0	1	1	1	0	FR47-like	protein
Occludin_ELL	PF07303.13	gi|410669676|ref|YP_006922047.1|	-	0.033	14.9	9.6	0.49	11.2	0.3	3.9	3	1	0	3	3	3	0	Occludin	homology	domain
PEPcase_2	PF14010.6	gi|410669676|ref|YP_006922047.1|	-	0.11	10.9	7.1	0.93	7.9	1.3	2.4	1	1	0	2	2	2	0	Phosphoenolpyruvate	carboxylase
FAM184	PF15665.5	gi|410669676|ref|YP_006922047.1|	-	0.21	11.3	11.6	0.16	11.7	6.4	2.9	3	0	0	3	3	3	0	Family	with	sequence	similarity	184,	A	and	B
Sulfatase_C	PF14707.6	gi|410669676|ref|YP_006922047.1|	-	0.36	11.6	2.4	2.8	8.7	0.2	2.5	2	0	0	2	2	2	0	C-terminal	region	of	aryl-sulfatase
DUF1664	PF07889.12	gi|410669676|ref|YP_006922047.1|	-	0.64	10.1	13.5	1.5	8.8	2.5	3.5	4	1	0	4	4	4	0	Protein	of	unknown	function	(DUF1664)
Hrs_helical	PF12210.8	gi|410669676|ref|YP_006922047.1|	-	1.4	9.5	11.8	1.6	9.3	0.5	4.3	3	1	0	3	3	3	0	Hepatocyte	growth	factor-regulated	tyrosine	kinase	substrate
DUF948	PF06103.11	gi|410669676|ref|YP_006922047.1|	-	1.7	9.0	10.2	1.5	9.1	1.3	3.8	2	1	2	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF4795	PF16043.5	gi|410669676|ref|YP_006922047.1|	-	2.5	7.6	19.3	23	4.5	0.2	2.9	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4795)
DUF3461	PF11944.8	gi|410669676|ref|YP_006922047.1|	-	3.4	7.8	8.8	3.9	7.6	0.7	3.9	4	1	0	4	4	4	0	Protein	of	unknown	function	(DUF3461)
Ribosomal_L5	PF00281.19	gi|410669677|ref|YP_006922048.1|	-	0.083	13.2	0.3	16	6.0	0.1	2.4	2	0	0	2	2	2	0	Ribosomal	protein	L5
ATPase	PF06745.13	gi|410669678|ref|YP_006922049.1|	-	1.6e-45	155.3	0.2	2.9e-45	154.4	0.0	1.5	2	0	0	2	2	2	1	KaiC
AAA_25	PF13481.6	gi|410669678|ref|YP_006922049.1|	-	2e-06	27.5	0.0	4.6e-06	26.3	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
GvpD	PF07088.11	gi|410669678|ref|YP_006922049.1|	-	1.6e-05	23.7	0.0	0.077	11.6	0.0	2.1	2	0	0	2	2	2	2	GvpD	gas	vesicle	protein
DnaB_C	PF03796.15	gi|410669678|ref|YP_006922049.1|	-	0.00067	19.1	0.0	0.0023	17.3	0.0	1.7	1	1	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
AAA_14	PF13173.6	gi|410669678|ref|YP_006922049.1|	-	0.0015	18.5	0.0	0.0033	17.5	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|410669678|ref|YP_006922049.1|	-	0.0018	18.4	0.0	0.029	14.6	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
T2SSE	PF00437.20	gi|410669678|ref|YP_006922049.1|	-	0.0058	15.7	0.0	0.01	14.9	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_24	PF13479.6	gi|410669678|ref|YP_006922049.1|	-	0.0063	16.2	0.1	0.01	15.5	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
Rad51	PF08423.11	gi|410669678|ref|YP_006922049.1|	-	0.0083	15.4	0.0	0.014	14.7	0.0	1.3	1	0	0	1	1	1	1	Rad51
Sigma54_activat	PF00158.26	gi|410669678|ref|YP_006922049.1|	-	0.011	15.5	0.1	0.029	14.1	0.0	1.7	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_16	PF13191.6	gi|410669678|ref|YP_006922049.1|	-	0.016	15.6	0.0	0.046	14.1	0.0	1.7	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_7	PF12775.7	gi|410669678|ref|YP_006922049.1|	-	0.018	14.5	0.0	0.027	14.0	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
IstB_IS21	PF01695.17	gi|410669678|ref|YP_006922049.1|	-	0.029	14.1	0.0	0.063	13.0	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_29	PF13555.6	gi|410669678|ref|YP_006922049.1|	-	0.036	13.8	0.0	0.071	12.9	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_10	PF12846.7	gi|410669678|ref|YP_006922049.1|	-	0.046	12.6	0.0	0.064	12.2	0.0	1.2	1	0	0	1	1	1	0	AAA-like	domain
AAA_22	PF13401.6	gi|410669678|ref|YP_006922049.1|	-	0.046	14.0	0.0	0.084	13.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|410669678|ref|YP_006922049.1|	-	0.082	13.4	0.0	0.16	12.5	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
Septin	PF00735.18	gi|410669678|ref|YP_006922049.1|	-	0.12	11.6	0.1	0.33	10.2	0.0	1.7	2	0	0	2	2	2	0	Septin
CLP1_P	PF16575.5	gi|410669678|ref|YP_006922049.1|	-	0.16	11.8	0.0	0.31	10.8	0.0	1.5	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
DUF2075	PF09848.9	gi|410669678|ref|YP_006922049.1|	-	0.2	10.9	0.0	0.25	10.5	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Gemin6	PF06372.12	gi|410669679|ref|YP_006922050.1|	-	0.0011	18.5	0.1	0.0014	18.2	0.1	1.0	1	0	0	1	1	1	1	Gemin6	protein
LSM14	PF12701.7	gi|410669679|ref|YP_006922050.1|	-	0.021	14.9	0.1	0.039	14.1	0.1	1.6	1	1	0	1	1	1	0	Scd6-like	Sm	domain
V4R	PF02830.18	gi|410669680|ref|YP_006922051.1|	-	1.4e-06	28.2	1.0	3.7e-06	26.9	1.0	1.8	1	0	0	1	1	1	1	V4R	domain
MetOD1	PF18546.1	gi|410669680|ref|YP_006922051.1|	-	0.0012	18.9	0.7	0.0032	17.4	0.7	1.7	1	0	0	1	1	1	1	Metanogen	output	domain	1
NigD_N	PF12667.7	gi|410669680|ref|YP_006922051.1|	-	0.046	13.8	0.0	0.093	12.8	0.0	1.4	1	0	0	1	1	1	0	NigD-like	N-terminal	OB	domain
CheF-arch	PF04283.12	gi|410669681|ref|YP_006922052.1|	-	0.0021	17.9	0.0	0.0031	17.3	0.0	1.3	1	0	0	1	1	1	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
Ubiquitin_2	PF14560.6	gi|410669681|ref|YP_006922052.1|	-	0.0079	16.6	0.1	0.015	15.7	0.1	1.5	1	0	0	1	1	1	1	Ubiquitin-like	domain
GRAM	PF02893.20	gi|410669681|ref|YP_006922052.1|	-	0.054	13.4	0.0	0.19	11.6	0.0	1.9	2	0	0	2	2	2	0	GRAM	domain
Acetyltransf_1	PF00583.25	gi|410669682|ref|YP_006922053.1|	-	0.00039	20.6	0.0	0.00065	19.9	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Hist_deacetyl	PF00850.19	gi|410669683|ref|YP_006922054.1|	-	1.8e-70	237.8	0.0	2.5e-70	237.4	0.0	1.1	1	0	0	1	1	1	1	Histone	deacetylase	domain
Hist_deacetyl	PF00850.19	gi|410669684|ref|YP_006922055.1|	-	8.2e-79	265.3	0.0	1.8e-78	264.1	0.0	1.5	1	0	0	1	1	1	1	Histone	deacetylase	domain
DUF4878	PF12870.7	gi|410669685|ref|YP_006922056.1|	-	0.04	14.2	0.1	0.2	12.0	0.1	2.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4878)
Arch_flagellin	PF01917.16	gi|410669687|ref|YP_006922058.1|	-	3.8e-35	121.5	11.0	4.8e-35	121.2	11.0	1.1	1	0	0	1	1	1	1	Archaebacterial	flagellin
Arch_flagellin	PF01917.16	gi|410669688|ref|YP_006922059.1|	-	7.7e-41	140.0	9.8	9e-41	139.8	9.8	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
LapA_dom	PF06305.11	gi|410669689|ref|YP_006922060.1|	-	5.6	6.9	0.0	5.6	6.9	0.0	4.6	4	1	2	6	6	6	0	Lipopolysaccharide	assembly	protein	A	domain
DUF5134	PF17197.4	gi|410669689|ref|YP_006922060.1|	-	8.8	6.2	6.9	66	3.4	6.9	2.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF5134)
Mrr_N	PF14338.6	gi|410669690|ref|YP_006922061.1|	-	0.003	17.7	0.1	0.049	13.8	0.0	2.2	2	0	0	2	2	2	1	Mrr	N-terminal	domain
TylF	PF05711.11	gi|410669690|ref|YP_006922061.1|	-	0.069	12.4	0.0	0.085	12.1	0.0	1.2	1	0	0	1	1	1	0	Macrocin-O-methyltransferase	(TylF)
Arch_flagellin	PF01917.16	gi|410669691|ref|YP_006922062.1|	-	1e-37	129.9	13.6	1.3e-37	129.5	13.6	1.1	1	0	0	1	1	1	1	Archaebacterial	flagellin
Arch_flagellin	PF01917.16	gi|410669692|ref|YP_006922063.1|	-	2.1e-40	138.6	10.3	2.4e-40	138.4	10.3	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
Kinocilin	PF15033.6	gi|410669692|ref|YP_006922063.1|	-	0.016	14.9	0.0	1.7	8.3	0.0	2.3	2	0	0	2	2	2	0	Kinocilin	protein
DUF2304	PF10066.9	gi|410669693|ref|YP_006922064.1|	-	0.054	13.7	1.0	0.054	13.7	1.0	3.7	1	1	1	3	3	3	0	Uncharacterized	conserved	protein	(DUF2304)
Nucleos_tra2_N	PF01773.20	gi|410669693|ref|YP_006922064.1|	-	0.91	10.2	10.4	0.054	14.1	3.8	2.4	3	0	0	3	3	3	0	Na+	dependent	nucleoside	transporter	N-terminus
DUF2061	PF09834.9	gi|410669693|ref|YP_006922064.1|	-	4.8	7.8	9.6	0.48	11.0	1.9	3.0	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2061)
IGPS	PF00218.21	gi|410669694|ref|YP_006922065.1|	-	2.1e-67	227.0	1.1	2.6e-67	226.7	1.1	1.0	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
ThiG	PF05690.14	gi|410669694|ref|YP_006922065.1|	-	0.00013	21.4	0.7	0.00038	19.8	0.1	2.0	2	1	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
FMN_dh	PF01070.18	gi|410669694|ref|YP_006922065.1|	-	0.0062	15.6	0.0	0.0096	15.0	0.0	1.3	1	0	0	1	1	1	1	FMN-dependent	dehydrogenase
IMPDH	PF00478.25	gi|410669694|ref|YP_006922065.1|	-	0.023	13.7	0.1	0.037	13.0	0.1	1.3	1	0	0	1	1	1	0	IMP	dehydrogenase	/	GMP	reductase	domain
His_biosynth	PF00977.21	gi|410669694|ref|YP_006922065.1|	-	0.023	14.2	0.2	0.052	13.0	0.1	1.6	2	0	0	2	2	2	0	Histidine	biosynthesis	protein
DHO_dh	PF01180.21	gi|410669694|ref|YP_006922065.1|	-	0.029	13.6	0.1	0.064	12.5	0.1	1.6	1	0	0	1	1	1	0	Dihydroorotate	dehydrogenase
Trp_syntA	PF00290.20	gi|410669694|ref|YP_006922065.1|	-	0.05	12.4	0.1	0.17	10.7	0.0	1.9	2	0	0	2	2	2	0	Tryptophan	synthase	alpha	chain
NanE	PF04131.14	gi|410669694|ref|YP_006922065.1|	-	0.11	11.7	1.7	0.95	8.6	0.1	2.7	3	1	0	3	3	3	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
PALP	PF00291.25	gi|410669695|ref|YP_006922066.1|	-	7.8e-40	137.1	0.3	1e-39	136.7	0.3	1.2	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Trp_syntA	PF00290.20	gi|410669696|ref|YP_006922067.1|	-	1.7e-90	302.4	0.1	2e-90	302.2	0.1	1.0	1	0	0	1	1	1	1	Tryptophan	synthase	alpha	chain
PcrB	PF01884.17	gi|410669696|ref|YP_006922067.1|	-	2.6e-05	23.8	0.4	0.00069	19.1	0.2	2.2	2	0	0	2	2	2	1	PcrB	family
His_biosynth	PF00977.21	gi|410669696|ref|YP_006922067.1|	-	0.00011	21.8	0.2	0.00019	21.0	0.2	1.3	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
ThiG	PF05690.14	gi|410669696|ref|YP_006922067.1|	-	0.011	15.1	0.3	0.015	14.6	0.3	1.2	1	0	0	1	1	1	0	Thiazole	biosynthesis	protein	ThiG
IMPDH	PF00478.25	gi|410669696|ref|YP_006922067.1|	-	0.015	14.3	1.3	0.17	10.8	0.2	2.2	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
IGPS	PF00218.21	gi|410669696|ref|YP_006922067.1|	-	0.03	13.5	0.0	0.057	12.6	0.0	1.4	1	1	0	1	1	1	0	Indole-3-glycerol	phosphate	synthase
DHO_dh	PF01180.21	gi|410669696|ref|YP_006922067.1|	-	0.053	12.7	0.1	0.077	12.2	0.1	1.2	1	0	0	1	1	1	0	Dihydroorotate	dehydrogenase
FMN_dh	PF01070.18	gi|410669696|ref|YP_006922067.1|	-	0.1	11.6	3.4	0.075	12.1	0.8	1.9	2	0	0	2	2	2	0	FMN-dependent	dehydrogenase
SRP54	PF00448.22	gi|410669697|ref|YP_006922068.1|	-	2e-72	243.0	0.8	2.7e-72	242.5	0.8	1.2	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP54_N	PF02881.19	gi|410669697|ref|YP_006922068.1|	-	9.5e-10	38.6	0.9	9.5e-10	38.6	0.9	2.4	2	0	0	2	2	2	1	SRP54-type	protein,	helical	bundle	domain
Zeta_toxin	PF06414.12	gi|410669697|ref|YP_006922068.1|	-	2.1e-06	27.2	0.1	3.6e-06	26.4	0.1	1.3	1	0	0	1	1	1	1	Zeta	toxin
AAA_30	PF13604.6	gi|410669697|ref|YP_006922068.1|	-	1.7e-05	24.6	1.4	4.5e-05	23.3	1.4	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|410669697|ref|YP_006922068.1|	-	4.6e-05	23.9	0.1	4.6e-05	23.9	0.1	1.9	2	1	0	2	2	1	1	AAA	domain
Thymidylate_kin	PF02223.17	gi|410669697|ref|YP_006922068.1|	-	9.6e-05	22.1	0.1	0.00087	19.0	0.1	2.2	2	0	0	2	2	2	1	Thymidylate	kinase
AAA_28	PF13521.6	gi|410669697|ref|YP_006922068.1|	-	0.00049	20.4	0.1	0.00094	19.5	0.1	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|410669697|ref|YP_006922068.1|	-	0.00072	20.0	0.1	0.0028	18.1	0.1	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
APS_kinase	PF01583.20	gi|410669697|ref|YP_006922068.1|	-	0.00084	19.3	0.1	0.0016	18.4	0.1	1.4	1	0	0	1	1	1	1	Adenylylsulphate	kinase
MobB	PF03205.14	gi|410669697|ref|YP_006922068.1|	-	0.0017	18.2	2.7	0.015	15.2	0.1	2.4	1	1	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_33	PF13671.6	gi|410669697|ref|YP_006922068.1|	-	0.0029	17.8	0.2	0.0065	16.6	0.2	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|410669697|ref|YP_006922068.1|	-	0.0037	17.5	0.1	0.0083	16.4	0.1	1.6	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|410669697|ref|YP_006922068.1|	-	0.0039	17.6	0.1	0.011	16.2	0.1	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
LpxK	PF02606.14	gi|410669697|ref|YP_006922068.1|	-	0.006	15.7	0.3	0.015	14.5	0.0	1.7	2	0	0	2	2	2	1	Tetraacyldisaccharide-1-P	4'-kinase
DUF2075	PF09848.9	gi|410669697|ref|YP_006922068.1|	-	0.0086	15.3	0.3	0.021	14.1	0.3	1.6	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
CbiA	PF01656.23	gi|410669697|ref|YP_006922068.1|	-	0.01	15.9	0.5	0.028	14.5	0.5	1.9	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ResIII	PF04851.15	gi|410669697|ref|YP_006922068.1|	-	0.011	15.8	0.0	0.022	14.8	0.0	1.6	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
AAA_7	PF12775.7	gi|410669697|ref|YP_006922068.1|	-	0.013	15.0	0.0	0.024	14.1	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
ABC_tran	PF00005.27	gi|410669697|ref|YP_006922068.1|	-	0.017	15.7	0.1	0.059	13.9	0.0	1.9	2	0	0	2	2	2	0	ABC	transporter
MeaB	PF03308.16	gi|410669697|ref|YP_006922068.1|	-	0.017	14.1	0.1	0.027	13.4	0.1	1.4	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
NTPase_1	PF03266.15	gi|410669697|ref|YP_006922068.1|	-	0.018	15.0	0.9	0.2	11.6	0.8	2.2	1	1	1	2	2	2	0	NTPase
DUF853	PF05872.12	gi|410669697|ref|YP_006922068.1|	-	0.028	13.0	0.1	0.066	11.8	0.1	1.6	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF853)
LytR_C	PF13399.6	gi|410669697|ref|YP_006922068.1|	-	0.033	15.2	0.9	0.19	12.7	0.9	2.3	1	1	0	1	1	1	0	LytR	cell	envelope-related	transcriptional	attenuator
TrwB_AAD_bind	PF10412.9	gi|410669697|ref|YP_006922068.1|	-	0.034	13.1	0.2	0.068	12.1	0.1	1.5	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
cobW	PF02492.19	gi|410669697|ref|YP_006922068.1|	-	0.052	13.1	0.5	0.13	11.9	0.5	1.6	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
KTI12	PF08433.10	gi|410669697|ref|YP_006922068.1|	-	0.059	12.8	0.0	0.1	12.0	0.0	1.4	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
MMR_HSR1	PF01926.23	gi|410669697|ref|YP_006922068.1|	-	0.061	13.4	0.3	0.24	11.5	0.3	1.9	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Arf	PF00025.21	gi|410669697|ref|YP_006922068.1|	-	0.076	12.5	0.1	0.19	11.2	0.0	1.6	2	0	0	2	2	1	0	ADP-ribosylation	factor	family
Helicase_RecD	PF05127.14	gi|410669697|ref|YP_006922068.1|	-	0.079	12.8	0.1	0.14	12.0	0.1	1.4	1	0	0	1	1	1	0	Helicase
SurE	PF01975.17	gi|410669697|ref|YP_006922068.1|	-	0.089	12.6	0.1	0.16	11.7	0.1	1.4	1	0	0	1	1	1	0	Survival	protein	SurE
Glyco_transf_4	PF13439.6	gi|410669697|ref|YP_006922068.1|	-	0.14	12.1	0.0	0.26	11.3	0.0	1.4	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
Prefoldin	PF02996.17	gi|410669698|ref|YP_006922069.1|	-	3e-28	98.1	1.9	3.5e-28	97.9	1.9	1.1	1	0	0	1	1	1	1	Prefoldin	subunit
Prefoldin_2	PF01920.20	gi|410669698|ref|YP_006922069.1|	-	1.1e-08	35.0	8.8	0.00043	20.2	1.9	2.1	1	1	1	2	2	2	2	Prefoldin	subunit
DUF1043	PF06295.12	gi|410669698|ref|YP_006922069.1|	-	0.00098	19.1	0.2	0.00098	19.1	0.2	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1043)
Plk4_PB2	PF18409.1	gi|410669698|ref|YP_006922069.1|	-	0.0031	18.2	0.5	1.8	9.3	0.0	2.1	2	0	0	2	2	2	2	Polo-like	Kinase	4	Polo	Box	2
Snf7	PF03357.21	gi|410669698|ref|YP_006922069.1|	-	0.0074	15.9	9.2	0.026	14.1	9.2	1.8	1	1	0	1	1	1	1	Snf7
SKA1	PF07160.12	gi|410669698|ref|YP_006922069.1|	-	0.018	14.9	5.8	0.042	13.7	0.8	2.0	2	0	0	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
Fib_alpha	PF08702.10	gi|410669698|ref|YP_006922069.1|	-	0.072	13.3	4.9	0.54	10.4	0.5	2.1	2	0	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Cob_adeno_trans	PF01923.18	gi|410669698|ref|YP_006922069.1|	-	0.093	12.9	0.8	0.18	11.9	0.8	1.6	1	1	0	1	1	1	0	Cobalamin	adenosyltransferase
Telomere_reg-2	PF10193.9	gi|410669698|ref|YP_006922069.1|	-	0.13	12.7	2.8	0.63	10.5	0.2	2.0	2	0	0	2	2	2	0	Telomere	length	regulation	protein
DUF1664	PF07889.12	gi|410669698|ref|YP_006922069.1|	-	0.14	12.2	4.3	1	9.4	0.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF5320	PF17253.2	gi|410669698|ref|YP_006922069.1|	-	0.17	13.0	0.8	24	6.1	0.4	2.3	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5320)
YkyA	PF10368.9	gi|410669698|ref|YP_006922069.1|	-	0.32	10.7	9.0	2.3	7.8	2.2	2.1	2	0	0	2	2	2	0	Putative	cell-wall	binding	lipoprotein
TBCA	PF02970.16	gi|410669698|ref|YP_006922069.1|	-	0.39	11.1	7.4	2.7	8.4	0.9	2.6	2	1	0	2	2	2	0	Tubulin	binding	cofactor	A
zf-CpG_bind_C	PF12269.8	gi|410669698|ref|YP_006922069.1|	-	0.41	10.4	3.9	0.21	11.3	0.3	1.9	2	0	0	2	2	2	0	CpG	binding	protein	zinc	finger	C	terminal	domain
SKA2	PF16740.5	gi|410669698|ref|YP_006922069.1|	-	0.75	9.6	9.5	1.5	8.6	0.9	2.2	2	0	0	2	2	2	0	Spindle	and	kinetochore-associated	protein	2
DUF4200	PF13863.6	gi|410669698|ref|YP_006922069.1|	-	2.8	8.4	12.3	6	7.3	3.4	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
JIP_LZII	PF16471.5	gi|410669698|ref|YP_006922069.1|	-	3.9	7.7	9.4	6.9	6.9	1.3	2.5	3	0	0	3	3	2	0	JNK-interacting	protein	leucine	zipper	II
MCU	PF04678.13	gi|410669698|ref|YP_006922069.1|	-	9.4	6.3	8.7	5.9	7.0	1.1	2.0	1	1	0	2	2	2	0	Mitochondrial	calcium	uniporter
Ribosomal_L18A	PF01775.17	gi|410669699|ref|YP_006922070.1|	-	1e-11	45.0	0.2	1.1e-11	44.8	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	proteins	50S-L18Ae/60S-L20/60S-L18A
eIF-6	PF01912.18	gi|410669700|ref|YP_006922071.1|	-	2.1e-68	229.6	0.9	2.6e-68	229.3	0.9	1.1	1	0	0	1	1	1	1	eIF-6	family
Ribosomal_L31e	PF01198.19	gi|410669701|ref|YP_006922072.1|	-	5.2e-11	42.6	0.4	6.1e-11	42.4	0.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L31e
Ribosomal_L39	PF00832.20	gi|410669702|ref|YP_006922073.1|	-	2e-19	68.9	6.7	2.3e-19	68.7	6.7	1.1	1	0	0	1	1	1	1	Ribosomal	L39	protein
Asn_synthase	PF00733.21	gi|410669703|ref|YP_006922074.1|	-	8.4e-06	25.7	0.0	1.5e-05	24.9	0.0	1.4	1	0	0	1	1	1	1	Asparagine	synthase
QueC	PF06508.13	gi|410669703|ref|YP_006922074.1|	-	0.0072	15.8	0.0	0.021	14.3	0.0	1.7	1	1	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
Diphthami_syn_2	PF01902.17	gi|410669703|ref|YP_006922074.1|	-	0.018	14.6	0.0	0.041	13.4	0.0	1.6	2	0	0	2	2	2	0	Diphthamide	synthase
tRNA_Me_trans	PF03054.16	gi|410669703|ref|YP_006922074.1|	-	0.021	13.6	0.0	0.03	13.1	0.0	1.4	1	0	0	1	1	1	0	tRNA	methyl	transferase
Ntox8	PF15545.6	gi|410669703|ref|YP_006922074.1|	-	0.14	12.3	0.0	0.4	10.8	0.0	1.7	1	1	1	2	2	2	0	Bacterial	toxin	8
dsDNA_bind	PF01984.20	gi|410669704|ref|YP_006922075.1|	-	2e-27	95.7	22.0	2.2e-27	95.5	22.0	1.0	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
Caps_synth_GfcC	PF06251.11	gi|410669704|ref|YP_006922075.1|	-	0.03	13.9	8.7	0.035	13.7	8.7	1.1	1	0	0	1	1	1	0	Capsule	biosynthesis	GfcC
DUF3456	PF11938.8	gi|410669704|ref|YP_006922075.1|	-	0.075	13.5	2.6	0.092	13.3	2.6	1.1	1	0	0	1	1	1	0	TLR4	regulator	and	MIR-interacting	MSAP
SMC_N	PF02463.19	gi|410669704|ref|YP_006922075.1|	-	0.11	11.9	3.0	0.13	11.7	3.0	1.1	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
PIN_8	PF18476.1	gi|410669704|ref|YP_006922075.1|	-	0.17	11.8	6.0	0.2	11.5	6.0	1.0	1	0	0	1	1	1	0	PIN	like	domain
PAXX	PF15384.6	gi|410669704|ref|YP_006922075.1|	-	1.4	8.6	6.7	1.8	8.2	6.7	1.4	1	1	0	1	1	1	0	PAXX,	PAralog	of	XRCC4	and	XLF,	also	called	C9orf142
DUF4355	PF14265.6	gi|410669704|ref|YP_006922075.1|	-	4.2	7.6	14.1	3.5	7.9	12.7	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4355)
Ribosomal_S19e	PF01090.19	gi|410669705|ref|YP_006922076.1|	-	1.1e-56	190.3	0.0	1.2e-56	190.2	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
Ribosomal_S25	PF03297.15	gi|410669705|ref|YP_006922076.1|	-	0.042	14.1	0.2	0.1	12.8	0.0	1.7	2	0	0	2	2	2	0	S25	ribosomal	protein
MarR	PF01047.22	gi|410669705|ref|YP_006922076.1|	-	0.099	12.6	0.0	15	5.6	0.0	2.5	2	0	0	2	2	2	0	MarR	family
Adenylsucc_synt	PF00709.21	gi|410669706|ref|YP_006922077.1|	-	2.1e-161	537.5	0.0	2.4e-161	537.4	0.0	1.0	1	0	0	1	1	1	1	Adenylosuccinate	synthetase
YdjM	PF04307.14	gi|410669709|ref|YP_006922080.1|	-	4.8e-10	39.0	8.0	7.1e-10	38.5	8.0	1.3	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
DUF4184	PF13803.6	gi|410669709|ref|YP_006922080.1|	-	0.38	10.4	10.7	0.53	10.0	6.7	2.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4184)
CPBP	PF02517.16	gi|410669710|ref|YP_006922081.1|	-	1.9e-16	60.2	4.9	1.9e-16	60.2	4.9	3.0	2	1	0	2	2	2	1	CPBP	intramembrane	metalloprotease
DUF1616	PF07760.11	gi|410669711|ref|YP_006922082.1|	-	2.8e-90	302.7	0.1	3.2e-90	302.5	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
DUF2273	PF10031.9	gi|410669711|ref|YP_006922082.1|	-	1.4	9.0	9.7	0.056	13.5	3.1	2.1	2	0	0	2	2	2	0	Small	integral	membrane	protein	(DUF2273)
Polysacc_synt_C	PF14667.6	gi|410669713|ref|YP_006922084.1|	-	4.4e-08	33.3	21.2	1.6e-06	28.2	6.4	4.2	2	1	2	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt	PF01943.17	gi|410669713|ref|YP_006922084.1|	-	3.2e-07	30.0	28.7	3.2e-07	30.0	28.7	2.3	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
TraQ	PF09679.10	gi|410669713|ref|YP_006922084.1|	-	0.96	9.4	3.9	0.63	10.0	0.3	2.5	2	0	0	2	2	2	0	Type-F	conjugative	transfer	system	pilin	chaperone	(TraQ)
Asn_synthase	PF00733.21	gi|410669715|ref|YP_006922086.1|	-	2.3e-71	241.4	0.0	2.9e-71	241.0	0.0	1.1	1	0	0	1	1	1	1	Asparagine	synthase
GATase_7	PF13537.6	gi|410669715|ref|YP_006922086.1|	-	5.4e-45	152.3	0.0	1e-44	151.4	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.6	gi|410669715|ref|YP_006922086.1|	-	8.5e-43	145.8	0.0	1.4e-42	145.1	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
DUF3700	PF12481.8	gi|410669715|ref|YP_006922086.1|	-	0.00013	21.5	0.0	0.00025	20.6	0.0	1.4	1	0	0	1	1	1	1	Aluminium	induced	protein
NAD_synthase	PF02540.17	gi|410669715|ref|YP_006922086.1|	-	0.13	11.3	0.0	0.23	10.6	0.0	1.3	1	0	0	1	1	1	0	NAD	synthase
QueC	PF06508.13	gi|410669715|ref|YP_006922086.1|	-	0.18	11.3	0.0	0.36	10.3	0.0	1.4	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
Acetyltransf_6	PF13480.7	gi|410669716|ref|YP_006922087.1|	-	1.8e-08	34.6	0.0	2.8e-08	34.0	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FemAB	PF02388.16	gi|410669716|ref|YP_006922087.1|	-	0.00031	19.7	0.1	0.0008	18.4	0.1	1.5	2	0	0	2	2	2	1	FemAB	family
DUF4986	PF16375.5	gi|410669716|ref|YP_006922087.1|	-	0.14	12.8	0.0	0.3	11.8	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function
SIMPL	PF04402.14	gi|410669718|ref|YP_006922089.1|	-	2.8e-45	155.2	11.4	3.6e-45	154.9	11.4	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
Sigma_reg_N	PF13800.6	gi|410669718|ref|YP_006922089.1|	-	0.022	15.0	0.9	1	9.7	0.2	2.5	2	0	0	2	2	2	0	Sigma	factor	regulator	N-terminal
Mago_nashi	PF02792.14	gi|410669718|ref|YP_006922089.1|	-	0.13	12.4	0.1	0.26	11.4	0.1	1.4	1	0	0	1	1	1	0	Mago	nashi	protein
Amnionless	PF14828.6	gi|410669718|ref|YP_006922089.1|	-	2.2	7.0	9.4	0.34	9.7	3.7	2.2	1	1	2	3	3	3	0	Amnionless
Gate	PF07670.14	gi|410669719|ref|YP_006922090.1|	-	1.4e-08	35.0	15.2	5.8e-06	26.5	1.6	2.5	2	1	0	2	2	2	2	Nucleoside	recognition
TPR_12	PF13424.6	gi|410669721|ref|YP_006922092.1|	-	1.8e-26	92.2	35.5	0.0052	17.0	0.4	12.5	8	5	1	9	9	9	7	Tetratricopeptide	repeat
TPR_10	PF13374.6	gi|410669721|ref|YP_006922092.1|	-	2.4e-14	52.6	15.8	0.6	10.1	1.5	11.6	12	1	0	12	12	12	3	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|410669721|ref|YP_006922092.1|	-	3.8e-14	51.6	51.0	0.13	12.5	0.4	13.3	13	1	1	14	14	14	5	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|410669721|ref|YP_006922092.1|	-	1.1e-13	50.2	56.2	0.062	13.5	2.0	15.0	16	1	0	16	16	15	4	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|410669721|ref|YP_006922092.1|	-	9.5e-12	44.7	14.5	0.13	13.1	0.1	11.5	13	2	0	14	14	11	1	Tetratricopeptide	repeat
TPR_1	PF00515.28	gi|410669721|ref|YP_006922092.1|	-	6.2e-11	41.6	38.2	0.086	12.7	0.1	12.1	12	1	0	12	12	12	4	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|410669721|ref|YP_006922092.1|	-	8.6e-10	39.0	21.5	0.0042	17.6	0.1	10.1	10	2	1	11	11	10	3	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|410669721|ref|YP_006922092.1|	-	1.4e-09	37.3	31.9	0.011	15.7	0.3	11.8	14	0	0	14	14	14	3	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|410669721|ref|YP_006922092.1|	-	3.7e-07	30.7	6.1	0.044	14.4	0.0	5.7	6	0	0	6	6	5	2	Tetratricopeptide	repeat
TPR_MalT	PF17874.1	gi|410669721|ref|YP_006922092.1|	-	1.5e-05	24.6	6.1	0.087	12.2	0.0	5.0	6	1	0	6	6	6	2	MalT-like	TPR	region
TPR_6	PF13174.6	gi|410669721|ref|YP_006922092.1|	-	8.2e-05	23.0	29.2	0.8	10.5	0.0	10.2	10	2	0	10	10	8	1	Tetratricopeptide	repeat
PPR	PF01535.20	gi|410669721|ref|YP_006922092.1|	-	8.8e-05	22.5	12.6	6	7.3	0.0	7.9	10	0	0	10	10	7	1	PPR	repeat
TPR_11	PF13414.6	gi|410669721|ref|YP_006922092.1|	-	0.00029	20.5	18.7	5	6.9	0.0	8.7	9	0	0	9	9	9	2	TPR	repeat
TOM20_plant	PF06552.12	gi|410669721|ref|YP_006922092.1|	-	0.001	18.8	6.3	0.045	13.5	0.1	4.1	4	1	0	4	4	4	1	Plant	specific	mitochondrial	import	receptor	subunit	TOM20
DUF627	PF04781.12	gi|410669721|ref|YP_006922092.1|	-	0.0038	17.2	9.0	0.011	15.7	0.1	4.6	4	1	0	4	4	4	1	Protein	of	unknown	function	(DUF627)
RPN7	PF10602.9	gi|410669721|ref|YP_006922092.1|	-	0.0038	17.0	21.6	0.15	11.8	0.1	5.7	4	1	1	5	5	5	2	26S	proteasome	subunit	RPN7
TPR_17	PF13431.6	gi|410669721|ref|YP_006922092.1|	-	0.0058	16.9	18.0	3.5	8.2	0.1	8.9	11	2	0	11	11	7	1	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|410669721|ref|YP_006922092.1|	-	0.062	13.5	0.7	25	5.1	0.0	4.7	6	0	0	6	6	4	0	Tetratricopeptide	repeat
DUF2225	PF09986.9	gi|410669721|ref|YP_006922092.1|	-	0.12	12.0	17.7	1.3	8.7	2.4	5.1	2	1	3	6	6	6	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
PHM7_cyt	PF14703.6	gi|410669721|ref|YP_006922092.1|	-	0.13	12.5	6.4	2	8.6	0.1	3.5	3	1	0	3	3	3	0	Cytosolic	domain	of	10TM	putative	phosphate	transporter
NRDE-2	PF08424.10	gi|410669721|ref|YP_006922092.1|	-	0.94	8.5	5.1	4	6.5	1.0	3.4	2	1	0	3	3	3	0	NRDE-2,	necessary	for	RNA	interference
ANAPC3	PF12895.7	gi|410669721|ref|YP_006922092.1|	-	1	9.7	16.6	2.5	8.4	0.1	5.8	5	1	0	5	5	5	0	Anaphase-promoting	complex,	cyclosome,	subunit	3
Sel1	PF08238.12	gi|410669721|ref|YP_006922092.1|	-	1.3	9.8	4.8	81	4.1	0.1	4.4	4	0	0	4	4	3	0	Sel1	repeat
TPR_21	PF09976.9	gi|410669721|ref|YP_006922092.1|	-	4.7	6.9	11.7	0.49	10.1	0.3	4.2	4	1	0	4	4	4	0	Tetratricopeptide	repeat-like	domain
Gram_pos_anchor	PF00746.21	gi|410669723|ref|YP_006922094.1|	-	0.18	11.8	0.0	0.26	11.3	0.0	1.2	1	0	0	1	1	1	0	LPXTG	cell	wall	anchor	motif
YdjM	PF04307.14	gi|410669724|ref|YP_006922095.1|	-	1.2e-12	47.5	6.1	1.4e-12	47.3	6.1	1.0	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
PAS_4	PF08448.10	gi|410669725|ref|YP_006922096.1|	-	5.5e-43	145.7	0.0	1.1e-20	73.9	0.0	4.3	4	0	0	4	4	4	4	PAS	fold
HATPase_c	PF02518.26	gi|410669725|ref|YP_006922096.1|	-	7.4e-29	100.5	0.4	1.6e-28	99.4	0.4	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|410669725|ref|YP_006922096.1|	-	1.4e-28	99.2	0.3	4.2e-10	39.8	0.1	4.5	4	0	0	4	4	4	4	PAS	domain
5TM-5TMR_LYT	PF07694.12	gi|410669725|ref|YP_006922096.1|	-	1.9e-27	95.8	15.0	2.9e-27	95.2	15.0	1.2	1	0	0	1	1	1	1	5TMR	of	5TMR-LYT
PAS	PF00989.25	gi|410669725|ref|YP_006922096.1|	-	2.9e-26	91.7	0.0	3.1e-13	49.7	0.0	4.6	4	0	0	4	4	4	2	PAS	fold
PAS_8	PF13188.7	gi|410669725|ref|YP_006922096.1|	-	7.9e-21	73.6	0.0	1.2e-06	28.4	0.0	3.9	3	0	0	3	3	3	3	PAS	domain
HisKA	PF00512.25	gi|410669725|ref|YP_006922096.1|	-	4.9e-19	68.1	0.2	2e-18	66.2	0.1	2.2	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_3	PF08447.12	gi|410669725|ref|YP_006922096.1|	-	3.2e-10	40.2	0.0	0.0082	16.4	0.0	4.0	4	0	0	4	4	3	3	PAS	fold
sCache_3_3	PF17202.4	gi|410669725|ref|YP_006922096.1|	-	3.8e-08	33.7	0.0	0.0012	19.2	0.0	2.8	2	0	0	2	2	2	2	Single	cache	domain	3
Cache_3-Cache_2	PF17201.4	gi|410669725|ref|YP_006922096.1|	-	4e-08	32.9	0.0	0.00063	19.1	0.0	2.4	2	0	0	2	2	2	2	Cache	3/Cache	2	fusion	domain
PAS_10	PF13596.6	gi|410669725|ref|YP_006922096.1|	-	6e-05	23.6	0.1	0.02	15.5	0.0	3.5	4	1	0	4	4	3	1	PAS	domain
HATPase_c_5	PF14501.6	gi|410669725|ref|YP_006922096.1|	-	0.00069	19.5	0.1	0.0017	18.2	0.1	1.7	1	0	0	1	1	1	1	GHKL	domain
dCache_1	PF02743.18	gi|410669725|ref|YP_006922096.1|	-	0.0015	18.4	1.6	0.76	9.5	0.1	2.8	3	1	0	3	3	3	2	Cache	domain
HATPase_c_3	PF13589.6	gi|410669725|ref|YP_006922096.1|	-	0.0046	16.8	0.0	0.012	15.5	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
dCache_3	PF14827.6	gi|410669725|ref|YP_006922096.1|	-	0.0077	15.9	0.0	1.3	8.6	0.0	2.6	2	0	0	2	2	2	1	Double	sensory	domain	of	two-component	sensor	kinase
DUF817	PF05675.12	gi|410669725|ref|YP_006922096.1|	-	0.046	13.4	5.6	0.021	14.5	2.2	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF817)
DUF417	PF04224.12	gi|410669725|ref|YP_006922096.1|	-	0.064	12.8	0.6	0.17	11.5	0.6	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF417
Glycos_transf_2	PF00535.26	gi|410669728|ref|YP_006922099.1|	-	7.2e-18	65.0	0.2	9.3e-18	64.6	0.2	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|410669728|ref|YP_006922099.1|	-	0.00038	20.4	0.1	0.00051	20.0	0.1	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|410669728|ref|YP_006922099.1|	-	0.0053	17.3	0.1	0.0099	16.4	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
DUF5379	PF17350.2	gi|410669728|ref|YP_006922099.1|	-	0.052	13.8	4.3	0.093	13.0	4.3	1.4	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5379)
EI24	PF07264.11	gi|410669728|ref|YP_006922099.1|	-	0.16	12.2	3.4	0.24	11.6	3.4	1.2	1	0	0	1	1	1	0	Etoposide-induced	protein	2.4	(EI24)
CPBP	PF02517.16	gi|410669730|ref|YP_006922101.1|	-	1.3e-17	64.0	5.9	1.3e-17	64.0	5.9	2.6	3	0	0	3	3	3	2	CPBP	intramembrane	metalloprotease
DUF1616	PF07760.11	gi|410669731|ref|YP_006922102.1|	-	3.3e-107	358.2	0.3	3.8e-107	358.0	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
FUSC	PF04632.12	gi|410669731|ref|YP_006922102.1|	-	0.052	12.1	2.0	0.08	11.5	2.0	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
7TMR-DISM_7TM	PF07695.11	gi|410669731|ref|YP_006922102.1|	-	6.6	6.6	18.4	0.88	9.4	0.4	3.0	2	1	0	3	3	3	0	7TM	diverse	intracellular	signalling
CarboxypepD_reg	PF13620.6	gi|410669733|ref|YP_006922104.1|	-	0.033	14.4	1.1	0.15	12.4	0.1	2.5	1	1	2	3	3	3	0	Carboxypeptidase	regulatory-like	domain
TRAM	PF01938.20	gi|410669733|ref|YP_006922104.1|	-	0.05	13.6	0.1	0.42	10.6	0.0	2.3	2	0	0	2	2	2	0	TRAM	domain
YdjM	PF04307.14	gi|410669734|ref|YP_006922105.1|	-	2.9e-17	62.5	6.3	3.5e-17	62.3	6.3	1.1	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
OrfB_IS605	PF01385.19	gi|410669737|ref|YP_006922108.1|	-	2e-23	82.9	0.4	3.7e-23	82.0	0.4	1.3	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|410669737|ref|YP_006922108.1|	-	2.9e-19	68.7	0.1	7.6e-19	67.4	0.1	1.7	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.8	gi|410669737|ref|YP_006922108.1|	-	7.5e-16	57.3	0.0	3.4e-15	55.3	0.1	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
Nepo_coat_C	PF03688.14	gi|410669737|ref|YP_006922108.1|	-	0.0034	17.3	0.1	0.92	9.3	0.0	2.5	2	0	0	2	2	2	1	Nepovirus	coat	protein,	C-terminal	domain
zf-piccolo	PF05715.13	gi|410669737|ref|YP_006922108.1|	-	0.0034	17.5	1.4	0.0034	17.5	1.4	1.7	2	0	0	2	2	2	1	Piccolo	Zn-finger
zinc_ribbon_10	PF10058.9	gi|410669737|ref|YP_006922108.1|	-	0.007	16.1	1.0	0.018	14.7	1.0	1.7	1	0	0	1	1	1	1	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
HEPN_Cthe2314	PF18730.1	gi|410669737|ref|YP_006922108.1|	-	0.051	13.6	1.6	0.49	10.4	0.2	2.2	2	0	0	2	2	2	0	Cthe_2314-like	HEPN
zf-C2H2_3	PF13878.6	gi|410669737|ref|YP_006922108.1|	-	0.21	11.4	1.8	5.1	7.0	0.0	3.2	3	0	0	3	3	3	0	zinc-finger	of	acetyl-transferase	ESCO
DUF4570	PF15134.6	gi|410669737|ref|YP_006922108.1|	-	0.9	9.6	3.8	3.3	7.8	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4570)
Rubredoxin_2	PF18073.1	gi|410669737|ref|YP_006922108.1|	-	3.9	7.3	7.8	8.5	6.2	5.2	2.9	2	1	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-RanBP	PF00641.18	gi|410669737|ref|YP_006922108.1|	-	4.7	6.6	6.2	8.8	5.7	1.1	2.5	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
Glycos_transf_2	PF00535.26	gi|410669738|ref|YP_006922109.1|	-	1.2e-19	70.7	0.0	1.7e-19	70.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|410669738|ref|YP_006922109.1|	-	4.7e-06	26.7	0.1	5.9e-06	26.3	0.1	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|410669738|ref|YP_006922109.1|	-	0.00011	22.6	0.0	0.00021	21.7	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
DUF1547	PF07577.11	gi|410669738|ref|YP_006922109.1|	-	0.03	14.7	0.0	0.87	10.0	0.0	2.3	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF1547)
DUF374	PF04028.13	gi|410669738|ref|YP_006922109.1|	-	0.093	12.3	0.0	0.28	10.7	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF374)
Promethin	PF16015.5	gi|410669738|ref|YP_006922109.1|	-	2.8	7.9	8.8	4.8	7.2	8.8	1.3	1	0	0	1	1	1	0	Promethin
Glycos_transf_1	PF00534.20	gi|410669740|ref|YP_006922111.1|	-	2.7e-24	85.6	0.0	3.8e-24	85.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|410669740|ref|YP_006922111.1|	-	7.2e-20	71.8	0.0	1.1e-19	71.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|410669740|ref|YP_006922111.1|	-	4.2e-07	30.3	0.0	7.1e-07	29.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|410669740|ref|YP_006922111.1|	-	2.1e-06	27.8	0.0	3.2e-06	27.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|410669740|ref|YP_006922111.1|	-	0.054	13.9	0.0	0.073	13.5	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	transferase	4-like	domain
Prenyltrans	PF00432.21	gi|410669741|ref|YP_006922112.1|	-	0.00014	21.5	0.0	0.22	11.3	0.0	2.6	2	0	0	2	2	2	2	Prenyltransferase	and	squalene	oxidase	repeat
SQHop_cyclase_C	PF13243.6	gi|410669741|ref|YP_006922112.1|	-	0.0029	16.8	0.0	0.51	9.4	0.0	2.5	2	1	0	2	2	2	2	Squalene-hopene	cyclase	C-terminal	domain
Pec_lyase	PF09492.10	gi|410669741|ref|YP_006922112.1|	-	0.046	13.0	0.0	0.32	10.3	0.1	1.9	1	1	1	2	2	2	0	Pectic	acid	lyase
SQHop_cyclase_N	PF13249.6	gi|410669741|ref|YP_006922112.1|	-	0.12	11.5	0.0	3.3	6.7	0.0	2.5	3	0	0	3	3	3	0	Squalene-hopene	cyclase	N-terminal	domain
TED_complement	PF07678.14	gi|410669741|ref|YP_006922112.1|	-	0.2	10.7	0.0	33	3.4	0.0	2.8	2	1	1	3	3	3	0	A-macroglobulin	TED	domain
GFO_IDH_MocA	PF01408.22	gi|410669742|ref|YP_006922113.1|	-	2.3e-21	76.8	0.4	5.2e-21	75.7	0.0	1.9	2	0	0	2	2	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
ADH_zinc_N	PF00107.26	gi|410669742|ref|YP_006922113.1|	-	6.3e-17	61.8	0.0	1.6e-16	60.4	0.0	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
UDPG_MGDP_dh_N	PF03721.14	gi|410669742|ref|YP_006922113.1|	-	3.7e-06	26.6	0.1	8.4e-06	25.5	0.1	1.6	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
GFO_IDH_MocA_C	PF02894.17	gi|410669742|ref|YP_006922113.1|	-	0.00027	20.9	0.0	0.00064	19.7	0.0	1.6	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
TrkA_N	PF02254.18	gi|410669742|ref|YP_006922113.1|	-	0.0029	17.8	0.2	0.012	15.9	0.2	2.1	1	0	0	1	1	1	1	TrkA-N	domain
AlaDh_PNT_C	PF01262.21	gi|410669742|ref|YP_006922113.1|	-	0.0032	16.8	2.6	0.004	16.5	0.9	2.0	1	1	1	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
ADH_N	PF08240.12	gi|410669742|ref|YP_006922113.1|	-	0.0077	16.1	0.8	0.041	13.8	0.7	2.2	1	1	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
2-Hacid_dh_C	PF02826.19	gi|410669742|ref|YP_006922113.1|	-	0.013	14.9	0.2	0.032	13.6	0.2	1.6	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Glu_dehyd_C	PF16912.5	gi|410669742|ref|YP_006922113.1|	-	0.013	15.0	0.1	0.32	10.4	0.0	2.4	2	0	0	2	2	2	0	Glucose	dehydrogenase	C-terminus
NAD_binding_3	PF03447.16	gi|410669742|ref|YP_006922113.1|	-	0.067	13.9	0.2	0.22	12.2	0.0	1.9	2	0	0	2	2	2	0	Homoserine	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|410669742|ref|YP_006922113.1|	-	0.12	12.2	0.4	0.88	9.4	0.2	2.6	2	1	1	3	3	3	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ADH_N_2	PF16884.5	gi|410669742|ref|YP_006922113.1|	-	0.16	11.9	0.0	0.57	10.1	0.0	1.9	2	0	0	2	2	2	0	N-terminal	domain	of	oxidoreductase
AMP-binding	PF00501.28	gi|410669743|ref|YP_006922114.1|	-	0.0058	15.3	0.0	0.0086	14.7	0.0	1.4	1	0	0	1	1	1	1	AMP-binding	enzyme
PGA_cap	PF09587.10	gi|410669744|ref|YP_006922115.1|	-	8.6e-66	222.0	0.0	1.2e-65	221.5	0.0	1.2	1	0	0	1	1	1	1	Bacterial	capsule	synthesis	protein	PGA_cap
Glycos_transf_2	PF00535.26	gi|410669745|ref|YP_006922116.1|	-	1.8e-23	83.2	0.3	2.9e-23	82.5	0.3	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|410669745|ref|YP_006922116.1|	-	1e-12	48.4	0.0	2.9e-12	47.0	0.0	1.7	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|410669745|ref|YP_006922116.1|	-	2e-09	37.2	0.0	3.1e-09	36.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|410669745|ref|YP_006922116.1|	-	1e-08	35.0	2.8	6.4e-08	32.4	2.7	1.9	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|410669745|ref|YP_006922116.1|	-	6.7e-08	32.7	0.0	9.2e-08	32.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_7C	PF02709.14	gi|410669745|ref|YP_006922116.1|	-	0.00011	21.8	0.3	0.00021	20.9	0.3	1.4	1	0	0	1	1	1	1	N-terminal	domain	of	galactosyltransferase
Glyco_tranf_2_4	PF13704.6	gi|410669745|ref|YP_006922116.1|	-	0.013	16.0	0.5	0.028	14.9	0.2	1.7	2	0	0	2	2	2	0	Glycosyl	transferase	family	2
Glycos_transf_1	PF00534.20	gi|410669746|ref|YP_006922117.1|	-	1.7e-37	128.6	0.0	1e-36	126.0	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|410669746|ref|YP_006922117.1|	-	2.3e-26	92.8	0.0	3.5e-26	92.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|410669746|ref|YP_006922117.1|	-	4.6e-18	65.8	0.0	7.5e-18	65.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|410669746|ref|YP_006922117.1|	-	1.4e-12	48.3	0.0	2.2e-12	47.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|410669746|ref|YP_006922117.1|	-	1.4e-05	25.4	0.0	3.6e-05	24.1	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|410669746|ref|YP_006922117.1|	-	6.3e-05	23.0	0.1	0.00013	22.0	0.1	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
DUF2325	PF10087.9	gi|410669746|ref|YP_006922117.1|	-	0.079	13.1	0.0	2.3	8.4	0.0	2.5	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2325)
Glyco_transf_5	PF08323.11	gi|410669746|ref|YP_006922117.1|	-	0.093	12.4	0.0	0.23	11.1	0.0	1.7	1	1	0	1	1	1	0	Starch	synthase	catalytic	domain
Glycos_transf_1	PF00534.20	gi|410669747|ref|YP_006922118.1|	-	3.5e-35	121.0	0.0	6e-35	120.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|410669747|ref|YP_006922118.1|	-	1.6e-25	90.1	0.0	2.4e-25	89.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|410669747|ref|YP_006922118.1|	-	2.3e-08	34.3	0.0	5.1e-08	33.2	0.0	1.5	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Polysacc_synt_C	PF14667.6	gi|410669749|ref|YP_006922120.1|	-	1.2e-23	83.8	19.4	1.2e-23	83.8	19.4	3.9	3	1	0	4	4	4	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt	PF01943.17	gi|410669749|ref|YP_006922120.1|	-	1.8e-23	83.3	53.0	1.3e-22	80.5	24.9	2.3	1	1	1	2	2	2	2	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.6	gi|410669749|ref|YP_006922120.1|	-	6e-20	71.6	13.8	6e-20	71.6	13.8	2.5	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
MatE	PF01554.18	gi|410669749|ref|YP_006922120.1|	-	1.5e-12	47.5	12.3	1.5e-12	47.5	12.3	3.8	3	2	0	3	3	3	1	MatE
MurJ	PF03023.14	gi|410669749|ref|YP_006922120.1|	-	4.2e-09	35.5	36.9	5.4e-09	35.2	35.3	2.0	1	1	0	1	1	1	1	Lipid	II	flippase	MurJ
DUF1453	PF07301.11	gi|410669749|ref|YP_006922120.1|	-	0.0014	18.7	4.2	0.0014	18.7	4.2	3.4	4	0	0	4	4	4	1	Protein	of	unknown	function	(DUF1453)
MrpF_PhaF	PF04066.13	gi|410669749|ref|YP_006922120.1|	-	0.047	14.1	0.1	0.047	14.1	0.1	4.4	4	0	0	4	4	4	0	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
DUF983	PF06170.12	gi|410669749|ref|YP_006922120.1|	-	0.053	13.9	0.1	0.053	13.9	0.1	4.2	4	3	3	7	7	7	0	Protein	of	unknown	function	(DUF983)
VEGFR-2_TMD	PF17988.1	gi|410669749|ref|YP_006922120.1|	-	4.2	6.9	7.6	0.69	9.4	1.8	2.7	2	0	0	2	2	2	0	VEGFR-2	Transmembrane	domain
Epimerase	PF01370.21	gi|410669751|ref|YP_006922122.1|	-	1.2e-56	191.9	0.0	1.5e-56	191.6	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|410669751|ref|YP_006922122.1|	-	1.5e-54	185.7	0.0	2.5e-54	184.9	0.0	1.4	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|410669751|ref|YP_006922122.1|	-	5e-24	84.8	0.0	6.7e-24	84.4	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|410669751|ref|YP_006922122.1|	-	1.5e-17	63.7	0.1	5.3e-17	61.9	0.1	1.7	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|410669751|ref|YP_006922122.1|	-	9.3e-13	47.9	0.1	3.5e-09	36.2	0.1	2.3	1	1	0	1	1	1	1	Male	sterility	protein
RmlD_sub_bind	PF04321.17	gi|410669751|ref|YP_006922122.1|	-	3.3e-09	36.2	0.0	5.8e-09	35.5	0.0	1.3	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.6	gi|410669751|ref|YP_006922122.1|	-	4.3e-09	36.5	0.0	6e-09	36.0	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|410669751|ref|YP_006922122.1|	-	0.002	17.7	0.1	0.0035	16.9	0.1	1.4	1	0	0	1	1	1	1	NmrA-like	family
TrkA_N	PF02254.18	gi|410669751|ref|YP_006922122.1|	-	0.0082	16.4	0.1	0.015	15.5	0.1	1.6	1	1	0	1	1	1	1	TrkA-N	domain
Ldh_1_N	PF00056.23	gi|410669751|ref|YP_006922122.1|	-	0.037	14.1	0.1	0.067	13.3	0.1	1.4	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|410669751|ref|YP_006922122.1|	-	0.082	13.4	0.1	0.26	11.8	0.0	1.8	2	0	0	2	2	2	0	Putative	NAD(P)-binding
DUF3368	PF11848.8	gi|410669751|ref|YP_006922122.1|	-	0.12	12.2	0.4	0.6	9.9	0.2	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3368)
Sacchrp_dh_NADP	PF03435.18	gi|410669751|ref|YP_006922122.1|	-	0.12	12.6	0.0	0.22	11.8	0.0	1.4	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
SpoVAD	PF07451.11	gi|410669751|ref|YP_006922122.1|	-	0.13	11.0	0.1	0.27	9.9	0.1	1.5	2	0	0	2	2	2	0	Stage	V	sporulation	protein	AD	(SpoVAD)
UDPG_MGDP_dh_C	PF03720.15	gi|410669752|ref|YP_006922123.1|	-	5.9e-20	71.7	0.1	3.4e-19	69.2	0.0	2.3	3	0	0	3	3	3	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|410669752|ref|YP_006922123.1|	-	5.7e-16	58.5	0.0	1.2e-15	57.4	0.0	1.6	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_N	PF03721.14	gi|410669752|ref|YP_006922123.1|	-	9.5e-13	48.1	0.1	5.9e-12	45.5	0.0	2.1	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_11	PF14833.6	gi|410669752|ref|YP_006922123.1|	-	0.039	14.2	0.0	0.07	13.4	0.0	1.4	1	0	0	1	1	1	0	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|410669752|ref|YP_006922123.1|	-	0.11	12.7	0.0	0.53	10.5	0.0	2.2	2	0	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|410669753|ref|YP_006922124.1|	-	4e-56	189.6	0.0	6.7e-56	188.8	0.0	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|410669753|ref|YP_006922124.1|	-	1.3e-25	89.4	0.1	2.5e-25	88.5	0.1	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|410669753|ref|YP_006922124.1|	-	3.1e-21	75.8	0.1	1.4e-20	73.7	0.0	2.1	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
NAD_binding_2	PF03446.15	gi|410669753|ref|YP_006922124.1|	-	4.1e-06	27.1	0.0	1.6e-05	25.1	0.0	2.0	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|410669753|ref|YP_006922124.1|	-	0.00012	21.5	0.3	0.014	14.7	0.0	2.8	3	0	0	3	3	3	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|410669753|ref|YP_006922124.1|	-	0.00065	19.6	0.0	0.0013	18.7	0.0	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|410669753|ref|YP_006922124.1|	-	0.00065	19.4	0.0	0.0011	18.6	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
NAD_Gly3P_dh_N	PF01210.23	gi|410669753|ref|YP_006922124.1|	-	0.001	19.1	0.0	0.039	13.9	0.0	2.6	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
adh_short_C2	PF13561.6	gi|410669753|ref|YP_006922124.1|	-	0.015	14.8	0.0	1.7	8.1	0.0	2.3	2	0	0	2	2	2	0	Enoyl-(Acyl	carrier	protein)	reductase
TrkA_N	PF02254.18	gi|410669753|ref|YP_006922124.1|	-	0.017	15.4	0.0	0.077	13.3	0.0	2.2	2	0	0	2	2	1	0	TrkA-N	domain
F420_oxidored	PF03807.17	gi|410669753|ref|YP_006922124.1|	-	0.044	14.4	0.0	1.4	9.6	0.0	2.7	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
AlaDh_PNT_C	PF01262.21	gi|410669753|ref|YP_006922124.1|	-	0.057	12.7	0.0	0.11	11.8	0.0	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_2	PF07992.14	gi|410669753|ref|YP_006922124.1|	-	0.1	11.8	0.0	0.18	11.0	0.0	1.3	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|410669753|ref|YP_006922124.1|	-	0.12	11.5	0.0	0.34	9.9	0.0	1.7	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
Epimerase_2	PF02350.19	gi|410669754|ref|YP_006922125.1|	-	1.8e-113	379.0	0.0	2e-113	378.8	0.0	1.0	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
Glyco_trans_4_4	PF13579.6	gi|410669754|ref|YP_006922125.1|	-	0.004	17.6	0.0	0.01	16.3	0.0	1.7	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.6	gi|410669754|ref|YP_006922125.1|	-	0.0044	17.0	0.0	0.011	15.7	0.0	1.7	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
MGDG_synth	PF06925.11	gi|410669754|ref|YP_006922125.1|	-	0.11	12.6	0.0	0.24	11.5	0.0	1.5	1	0	0	1	1	1	0	Monogalactosyldiacylglycerol	(MGDG)	synthase
Glyco_trans_4_2	PF13477.6	gi|410669754|ref|YP_006922125.1|	-	0.16	12.0	0.0	0.28	11.2	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
Epimerase	PF01370.21	gi|410669755|ref|YP_006922126.1|	-	4e-49	167.3	0.0	4.8e-49	167.0	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|410669755|ref|YP_006922126.1|	-	3.1e-45	155.0	0.1	8e-45	153.7	0.1	1.6	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|410669755|ref|YP_006922126.1|	-	5.1e-22	78.2	0.0	6.3e-22	77.9	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|410669755|ref|YP_006922126.1|	-	2.6e-17	62.9	0.0	2.4e-16	59.7	0.0	2.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.17	gi|410669755|ref|YP_006922126.1|	-	2.2e-13	50.0	0.0	2.8e-13	49.6	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.6	gi|410669755|ref|YP_006922126.1|	-	6.3e-13	49.0	0.0	8.8e-13	48.5	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|410669755|ref|YP_006922126.1|	-	6.8e-12	45.1	0.1	1.9e-09	37.1	0.1	2.7	1	1	0	1	1	1	1	Male	sterility	protein
adh_short	PF00106.25	gi|410669755|ref|YP_006922126.1|	-	7.4e-06	25.6	0.1	0.00011	21.7	0.1	2.4	1	1	0	1	1	1	1	short	chain	dehydrogenase
NmrA	PF05368.13	gi|410669755|ref|YP_006922126.1|	-	1.7e-05	24.5	0.0	2.5e-05	23.9	0.0	1.3	1	0	0	1	1	1	1	NmrA-like	family
Sacchrp_dh_NADP	PF03435.18	gi|410669755|ref|YP_006922126.1|	-	0.049	13.9	0.0	0.082	13.2	0.0	1.5	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
KR	PF08659.10	gi|410669755|ref|YP_006922126.1|	-	0.066	13.1	0.1	0.45	10.4	0.1	2.1	1	1	0	1	1	1	0	KR	domain
TrkA_N	PF02254.18	gi|410669755|ref|YP_006922126.1|	-	0.073	13.3	0.0	0.39	11.0	0.0	2.1	2	0	0	2	2	2	0	TrkA-N	domain
DDE_Tnp_1	PF01609.21	gi|410669758|ref|YP_006922129.1|	-	0.0031	17.2	0.0	0.0055	16.4	0.0	1.3	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|410669758|ref|YP_006922129.1|	-	0.0057	16.9	0.2	0.0072	16.6	0.2	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_4	PF13359.6	gi|410669758|ref|YP_006922129.1|	-	0.014	15.1	0.0	0.014	15.0	0.0	1.1	1	0	0	1	1	1	0	DDE	superfamily	endonuclease
DUF445	PF04286.12	gi|410669761|ref|YP_006922132.1|	-	0.0079	16.0	0.0	0.0093	15.8	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF445)
ANAPC3	PF12895.7	gi|410669765|ref|YP_006922136.1|	-	0.036	14.3	0.0	0.054	13.7	0.0	1.2	1	0	0	1	1	1	0	Anaphase-promoting	complex,	cyclosome,	subunit	3
Dynein_light	PF01221.18	gi|410669765|ref|YP_006922136.1|	-	0.095	13.0	0.1	0.12	12.7	0.1	1.3	1	0	0	1	1	1	0	Dynein	light	chain	type	1
Zn-ribbon_8	PF09723.10	gi|410669766|ref|YP_006922137.1|	-	0.00038	20.5	4.4	0.0006	19.9	4.4	1.3	1	0	0	1	1	1	1	Zinc	ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|410669766|ref|YP_006922137.1|	-	0.00089	19.3	3.1	0.00089	19.3	3.1	1.1	1	0	0	1	1	1	1	Transposase	zinc-binding	domain
UPF0547	PF10571.9	gi|410669766|ref|YP_006922137.1|	-	0.0024	17.9	7.9	0.16	12.1	1.6	2.4	2	0	0	2	2	2	2	Uncharacterised	protein	family	UPF0547
HypA	PF01155.19	gi|410669766|ref|YP_006922137.1|	-	0.0052	16.8	2.2	0.0055	16.7	2.2	1.0	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_4	PF13717.6	gi|410669766|ref|YP_006922137.1|	-	0.023	14.6	3.6	0.94	9.5	0.2	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
FYDLN_acid	PF09538.10	gi|410669766|ref|YP_006922137.1|	-	0.28	11.9	2.2	0.46	11.2	2.2	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
zf-ribbon_3	PF13248.6	gi|410669766|ref|YP_006922137.1|	-	0.59	9.6	8.0	1.5	8.3	1.6	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
IstB_IS21	PF01695.17	gi|410669769|ref|YP_006922140.1|	-	2.8e-08	33.7	0.0	8.2e-08	32.2	0.0	1.8	1	1	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_24	PF13479.6	gi|410669769|ref|YP_006922140.1|	-	1.3e-06	28.3	0.0	2.2e-06	27.6	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
ATPase	PF06745.13	gi|410669769|ref|YP_006922140.1|	-	0.00092	18.6	1.9	0.57	9.5	0.0	2.8	1	1	1	2	2	2	2	KaiC
AAA_25	PF13481.6	gi|410669769|ref|YP_006922140.1|	-	0.0015	18.2	0.4	0.22	11.1	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
Rad51	PF08423.11	gi|410669769|ref|YP_006922140.1|	-	0.0067	15.7	0.0	0.17	11.1	0.0	2.1	1	1	1	2	2	2	1	Rad51
AAA_5	PF07728.14	gi|410669769|ref|YP_006922140.1|	-	0.015	15.3	0.0	0.034	14.1	0.0	1.6	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
ATPase_2	PF01637.18	gi|410669769|ref|YP_006922140.1|	-	0.035	14.0	0.0	0.055	13.4	0.0	1.4	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
RecA	PF00154.21	gi|410669769|ref|YP_006922140.1|	-	0.044	13.3	0.2	0.1	12.1	0.2	1.6	1	1	0	1	1	1	0	recA	bacterial	DNA	recombination	protein
AAA_10	PF12846.7	gi|410669769|ref|YP_006922140.1|	-	0.044	12.7	0.0	0.066	12.1	0.0	1.2	1	0	0	1	1	1	0	AAA-like	domain
DUF87	PF01935.17	gi|410669769|ref|YP_006922140.1|	-	0.05	13.7	0.0	0.12	12.4	0.0	1.6	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
PhoH	PF02562.16	gi|410669769|ref|YP_006922140.1|	-	0.052	13.0	0.0	0.078	12.4	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
KTI12	PF08433.10	gi|410669769|ref|YP_006922140.1|	-	0.1	12.0	0.0	0.16	11.4	0.0	1.2	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
DUF815	PF05673.13	gi|410669769|ref|YP_006922140.1|	-	0.11	11.7	0.0	2.8	7.0	0.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF815)
CobU	PF02283.16	gi|410669769|ref|YP_006922140.1|	-	0.11	12.0	0.1	0.29	10.7	0.1	1.8	1	1	0	1	1	1	0	Cobinamide	kinase	/	cobinamide	phosphate	guanyltransferase
ABC_tran	PF00005.27	gi|410669769|ref|YP_006922140.1|	-	0.13	12.7	0.0	0.49	10.9	0.0	1.7	2	1	0	2	2	1	0	ABC	transporter
DEAD	PF00270.29	gi|410669769|ref|YP_006922140.1|	-	0.15	11.8	0.0	0.24	11.1	0.0	1.3	1	0	0	1	1	1	0	DEAD/DEAH	box	helicase
Prim-Pol	PF09250.11	gi|410669770|ref|YP_006922141.1|	-	7.6e-14	52.4	0.3	2.1e-13	51.0	0.1	1.8	2	0	0	2	2	2	1	Bifunctional	DNA	primase/polymerase,	N-terminal
Rad17	PF03215.15	gi|410669770|ref|YP_006922141.1|	-	0.003	17.5	0.0	0.0086	16.0	0.0	1.7	1	0	0	1	1	1	1	Rad17	P-loop	domain
D5_N	PF08706.11	gi|410669770|ref|YP_006922141.1|	-	0.0039	17.5	0.6	0.017	15.4	0.0	2.2	2	0	0	2	2	2	1	D5	N	terminal	like
ANF_receptor	PF01094.28	gi|410669774|ref|YP_006922145.1|	-	0.013	14.6	0.0	0.014	14.5	0.0	1.2	1	0	0	1	1	1	0	Receptor	family	ligand	binding	region
HTH_28	PF13518.6	gi|410669775|ref|YP_006922146.1|	-	0.012	15.7	0.2	0.042	14.0	0.0	1.9	2	1	1	3	3	3	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|410669775|ref|YP_006922146.1|	-	0.016	15.0	0.1	0.055	13.3	0.0	1.9	2	0	0	2	2	2	0	Homeodomain-like	domain
GspH	PF12019.8	gi|410669775|ref|YP_006922146.1|	-	0.022	15.2	0.6	0.029	14.8	0.6	1.2	1	0	0	1	1	1	0	Type	II	transport	protein	GspH
Flu_B_M2	PF04772.12	gi|410669775|ref|YP_006922146.1|	-	0.025	14.8	0.8	0.28	11.4	0.0	2.0	1	1	1	2	2	2	0	Influenza	B	matrix	protein	2	(BM2)
Terminase_6	PF03237.15	gi|410669776|ref|YP_006922147.1|	-	6.3e-21	75.0	0.0	1.2e-20	74.2	0.0	1.4	2	0	0	2	2	2	1	Terminase-like	family
Terminase_6C	PF17289.2	gi|410669776|ref|YP_006922147.1|	-	9.4e-15	55.0	0.0	1.4e-14	54.4	0.0	1.3	1	0	0	1	1	1	1	Terminase	RNaseH-like	domain
HEAT	PF02985.22	gi|410669776|ref|YP_006922147.1|	-	0.06	13.6	0.0	0.85	10.0	0.0	2.4	2	0	0	2	2	2	0	HEAT	repeat
OrfB_IS605	PF01385.19	gi|410669779|ref|YP_006922150.1|	-	5.9e-27	94.3	0.5	1.2e-26	93.3	0.5	1.4	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|410669779|ref|YP_006922150.1|	-	4.1e-20	71.5	0.4	8.9e-20	70.4	0.4	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.8	gi|410669779|ref|YP_006922150.1|	-	4.8e-16	58.0	0.4	9.8e-16	57.0	0.4	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
zinc_ribbon_10	PF10058.9	gi|410669779|ref|YP_006922150.1|	-	0.0097	15.6	1.5	0.024	14.4	1.5	1.7	1	0	0	1	1	1	1	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Nepo_coat_C	PF03688.14	gi|410669779|ref|YP_006922150.1|	-	0.025	14.4	0.1	1.1	9.1	0.0	2.8	3	0	0	3	3	3	0	Nepovirus	coat	protein,	C-terminal	domain
zf-piccolo	PF05715.13	gi|410669779|ref|YP_006922150.1|	-	0.035	14.2	1.3	0.035	14.2	1.3	1.7	2	0	0	2	2	2	0	Piccolo	Zn-finger
RuvC_1	PF18516.1	gi|410669779|ref|YP_006922150.1|	-	0.051	12.7	2.0	0.092	11.9	2.0	1.3	1	0	0	1	1	1	0	RuvC	nuclease	domain
zf-RanBP	PF00641.18	gi|410669779|ref|YP_006922150.1|	-	0.072	12.4	5.9	0.18	11.1	0.6	2.5	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
zf-Sec23_Sec24	PF04810.15	gi|410669779|ref|YP_006922150.1|	-	0.11	12.6	1.1	9.3	6.4	0.1	2.7	2	0	0	2	2	2	0	Sec23/Sec24	zinc	finger
Rep_fac-A_C	PF08646.10	gi|410669779|ref|YP_006922150.1|	-	0.6	9.8	6.8	0.62	9.8	0.0	3.2	2	1	2	5	5	5	0	Replication	factor-A	C	terminal	domain
Rubredoxin_2	PF18073.1	gi|410669779|ref|YP_006922150.1|	-	4	7.3	7.7	9.9	6.0	5.0	2.9	2	1	0	2	2	2	0	Rubredoxin	metal	binding	domain
DUF1638	PF07796.11	gi|410669780|ref|YP_006922151.1|	-	3.2e-34	118.3	0.0	4.1e-34	118.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1638)
DUF1724	PF08350.10	gi|410669781|ref|YP_006922152.1|	-	2.7e-20	72.2	0.4	5.7e-20	71.2	0.4	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
Zw10	PF06248.13	gi|410669781|ref|YP_006922152.1|	-	0.0017	17.0	0.0	0.002	16.8	0.0	1.1	1	0	0	1	1	1	1	Centromere/kinetochore	Zw10
HTH_20	PF12840.7	gi|410669781|ref|YP_006922152.1|	-	0.015	15.3	0.1	0.028	14.5	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
AAA_14	PF13173.6	gi|410669782|ref|YP_006922153.1|	-	8.8e-35	119.6	1.0	8.8e-35	119.6	1.0	2.2	2	0	0	2	2	2	1	AAA	domain
DUF4143	PF13635.6	gi|410669782|ref|YP_006922153.1|	-	2.8e-13	50.1	0.2	5.2e-13	49.2	0.1	1.5	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4143)
AAA_22	PF13401.6	gi|410669782|ref|YP_006922153.1|	-	4.5e-06	27.0	0.0	0.0015	18.9	0.0	3.1	3	1	0	3	3	3	1	AAA	domain
ATPase_2	PF01637.18	gi|410669782|ref|YP_006922153.1|	-	7.9e-05	22.7	3.5	0.00076	19.5	0.1	2.8	2	1	1	3	3	3	2	ATPase	domain	predominantly	from	Archaea
AAA_16	PF13191.6	gi|410669782|ref|YP_006922153.1|	-	0.00023	21.6	0.0	0.26	11.6	0.0	2.4	1	1	1	2	2	2	2	AAA	ATPase	domain
AAA	PF00004.29	gi|410669782|ref|YP_006922153.1|	-	0.0056	17.1	0.0	0.013	15.9	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.22	gi|410669782|ref|YP_006922153.1|	-	0.028	14.8	0.0	0.075	13.4	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
NB-ARC	PF00931.22	gi|410669782|ref|YP_006922153.1|	-	0.049	12.8	0.0	2.5	7.2	0.1	2.7	2	1	0	2	2	2	0	NB-ARC	domain
FtsK_SpoIIIE	PF01580.18	gi|410669782|ref|YP_006922153.1|	-	0.11	11.8	0.0	0.18	11.1	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_25	PF13481.6	gi|410669782|ref|YP_006922153.1|	-	0.19	11.3	0.0	0.33	10.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
ResIII	PF04851.15	gi|410669783|ref|YP_006922154.1|	-	1.3e-25	90.3	0.0	8.5e-25	87.7	0.0	2.2	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
XPB_DRD	PF18458.1	gi|410669783|ref|YP_006922154.1|	-	3e-20	71.8	0.1	1.8e-19	69.3	0.0	2.5	4	0	0	4	4	4	1	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
ERCC3_RAD25_C	PF16203.5	gi|410669783|ref|YP_006922154.1|	-	3.7e-18	65.6	0.1	6.8e-18	64.8	0.1	1.3	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
Helicase_C	PF00271.31	gi|410669783|ref|YP_006922154.1|	-	4.7e-15	55.9	0.0	4.2e-14	52.8	0.0	2.4	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|410669783|ref|YP_006922154.1|	-	8.5e-08	32.2	0.0	2.9e-07	30.4	0.0	1.9	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
AAA_22	PF13401.6	gi|410669783|ref|YP_006922154.1|	-	0.044	14.1	0.0	0.15	12.3	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
T2SSE	PF00437.20	gi|410669783|ref|YP_006922154.1|	-	0.057	12.5	0.0	0.16	11.0	0.0	1.7	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
DUF790	PF05626.11	gi|410669784|ref|YP_006922155.1|	-	6.2e-131	436.7	0.5	5e-130	433.7	1.2	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF790)
Mor	PF08765.11	gi|410669784|ref|YP_006922155.1|	-	0.025	14.6	0.0	20	5.2	0.0	3.4	3	0	0	3	3	3	0	Mor	transcription	activator	family
Phage_rep_org_N	PF09681.10	gi|410669784|ref|YP_006922155.1|	-	0.028	14.4	1.2	0.074	13.0	1.2	1.7	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
DUF2252	PF10009.9	gi|410669785|ref|YP_006922156.1|	-	1.7e-137	458.7	0.1	2e-137	458.5	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2252)
DUF1724	PF08350.10	gi|410669786|ref|YP_006922157.1|	-	1.2e-19	70.1	0.1	2.4e-19	69.2	0.1	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
HTH_20	PF12840.7	gi|410669786|ref|YP_006922157.1|	-	0.011	15.7	0.2	0.025	14.6	0.1	1.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
Endonuc-BglII	PF09195.11	gi|410669787|ref|YP_006922158.1|	-	0.1	12.4	0.1	0.1	12.4	0.1	1.1	1	0	0	1	1	1	0	Restriction	endonuclease	BglII
DUF3267	PF11667.8	gi|410669788|ref|YP_006922159.1|	-	2.7e-17	63.0	2.3	2.7e-17	63.0	2.3	2.0	2	0	0	2	2	2	1	Putative	zincin	peptidase
DUF234	PF03008.14	gi|410669789|ref|YP_006922160.1|	-	2.3e-24	85.7	0.1	5.9e-24	84.4	0.1	1.7	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
ATPase_2	PF01637.18	gi|410669789|ref|YP_006922160.1|	-	4.9e-22	79.0	0.0	1.5e-21	77.4	0.0	1.8	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|410669789|ref|YP_006922160.1|	-	1.1e-09	38.4	0.1	3.8e-09	36.7	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|410669789|ref|YP_006922160.1|	-	6.2e-06	26.5	0.0	1.5e-05	25.3	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
HTH_45	PF14947.6	gi|410669789|ref|YP_006922160.1|	-	0.00049	20.0	0.0	0.0011	18.9	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix
AAA_16	PF13191.6	gi|410669789|ref|YP_006922160.1|	-	0.0039	17.6	0.0	0.012	15.9	0.0	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
HTH_5	PF01022.20	gi|410669789|ref|YP_006922160.1|	-	0.0055	16.5	0.0	0.024	14.5	0.0	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
AAA	PF00004.29	gi|410669789|ref|YP_006922160.1|	-	0.069	13.6	0.0	0.13	12.7	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
MarR	PF01047.22	gi|410669789|ref|YP_006922160.1|	-	0.071	13.1	0.0	0.69	9.9	0.0	2.3	2	0	0	2	2	2	0	MarR	family
Roc	PF08477.13	gi|410669789|ref|YP_006922160.1|	-	0.1	12.8	0.0	0.25	11.6	0.0	1.6	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
DPPIV_N	PF00930.21	gi|410669790|ref|YP_006922161.1|	-	6.3e-06	25.2	20.9	0.12	11.1	0.1	7.0	4	2	3	7	7	7	5	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Kelch_4	PF13418.6	gi|410669790|ref|YP_006922161.1|	-	4.7e-05	23.3	0.0	30	4.7	0.0	6.8	8	0	0	8	8	8	2	Galactose	oxidase,	central	domain
Kelch_3	PF13415.6	gi|410669790|ref|YP_006922161.1|	-	0.4	11.0	3.3	92	3.5	0.0	4.7	5	0	0	5	5	5	0	Galactose	oxidase,	central	domain
OrfB_Zn_ribbon	PF07282.11	gi|410669791|ref|YP_006922162.1|	-	5e-11	42.4	0.0	1.7e-10	40.7	0.0	1.9	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|410669791|ref|YP_006922162.1|	-	2.2e-10	40.8	0.1	4.1e-10	39.9	0.1	1.4	1	0	0	1	1	1	1	Probable	transposase
Nore1-SARAH	PF16517.5	gi|410669791|ref|YP_006922162.1|	-	0.07	13.0	0.2	0.25	11.3	0.2	2.0	1	0	0	1	1	1	0	Novel	Ras	effector	1	C-terminal	SARAH	(Sav/Rassf/Hpo)	domain
Trns_repr_metal	PF02583.17	gi|410669791|ref|YP_006922162.1|	-	0.13	12.6	0.9	0.4	11.1	0.1	2.2	2	1	0	2	2	2	0	Metal-sensitive	transcriptional	repressor
OrfB_Zn_ribbon	PF07282.11	gi|410669792|ref|YP_006922163.1|	-	4.9e-23	80.8	2.7	9.3e-23	79.9	1.4	2.1	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|410669792|ref|YP_006922163.1|	-	3.7e-11	43.3	0.1	7.3e-11	42.3	0.1	1.4	1	0	0	1	1	1	1	Probable	transposase
C1_2	PF03107.16	gi|410669792|ref|YP_006922163.1|	-	0.041	14.2	0.8	0.097	13.0	0.8	1.6	1	0	0	1	1	1	0	C1	domain
Trns_repr_metal	PF02583.17	gi|410669792|ref|YP_006922163.1|	-	0.049	14.0	0.6	0.17	12.2	0.2	2.1	2	1	0	2	2	2	0	Metal-sensitive	transcriptional	repressor
Nore1-SARAH	PF16517.5	gi|410669792|ref|YP_006922163.1|	-	0.16	11.9	0.8	0.43	10.5	0.8	1.7	1	0	0	1	1	1	0	Novel	Ras	effector	1	C-terminal	SARAH	(Sav/Rassf/Hpo)	domain
Tnp_zf-ribbon_2	PF13842.6	gi|410669792|ref|YP_006922163.1|	-	1.2	10.0	7.3	0.86	10.5	5.0	2.0	2	0	0	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
zinc_ribbon_4	PF13717.6	gi|410669792|ref|YP_006922163.1|	-	1.7	8.7	6.5	5.1	7.1	4.8	2.5	2	1	1	3	3	3	0	zinc-ribbon	domain
RecR	PF02132.15	gi|410669792|ref|YP_006922163.1|	-	4	7.1	6.2	4.8	6.8	4.2	2.2	2	1	1	3	3	3	0	RecR	protein
META	PF03724.16	gi|410669793|ref|YP_006922164.1|	-	5.9e-36	122.7	0.0	2.6e-18	66.0	0.0	2.1	2	0	0	2	2	2	2	META	domain
Lipocalin_4	PF13648.6	gi|410669793|ref|YP_006922164.1|	-	2.1e-05	25.4	0.9	0.019	15.9	0.0	2.6	3	0	0	3	3	3	2	Lipocalin-like	domain
DUF5640	PF18692.1	gi|410669793|ref|YP_006922164.1|	-	0.0008	19.4	0.0	1.2	9.2	0.0	3.2	3	0	0	3	3	3	2	Family	of	unknown	function	(DUF5640)
Fer4	PF00037.27	gi|410669794|ref|YP_006922165.1|	-	9.3e-12	44.2	13.2	1.3e-05	24.8	0.9	2.8	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|410669794|ref|YP_006922165.1|	-	5.7e-10	38.8	13.6	5.2e-05	23.1	4.2	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|410669794|ref|YP_006922165.1|	-	2.4e-09	37.6	44.8	1.5e-06	28.7	15.5	2.4	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410669794|ref|YP_006922165.1|	-	5.4e-09	36.1	12.9	5.4e-09	36.1	12.9	1.7	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410669794|ref|YP_006922165.1|	-	7.7e-08	32.3	13.8	7.7e-08	32.3	13.8	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410669794|ref|YP_006922165.1|	-	2.1e-07	30.6	13.2	3e-05	23.8	1.7	2.9	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410669794|ref|YP_006922165.1|	-	1e-06	28.7	10.3	1e-06	28.7	10.3	1.8	2	0	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410669794|ref|YP_006922165.1|	-	1.2e-06	29.4	16.7	0.0018	19.2	1.6	2.4	2	1	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|410669794|ref|YP_006922165.1|	-	6.5e-05	23.3	16.1	0.0062	17.0	0.5	2.4	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410669794|ref|YP_006922165.1|	-	0.00057	20.2	11.1	0.0071	16.8	3.0	2.9	3	1	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|410669794|ref|YP_006922165.1|	-	0.002	18.3	12.6	0.058	13.6	2.6	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410669794|ref|YP_006922165.1|	-	0.019	15.5	21.0	0.071	13.7	3.1	2.5	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|410669794|ref|YP_006922165.1|	-	0.04	14.5	14.1	5	7.7	14.1	3.0	1	1	0	1	1	1	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_3	PF12798.7	gi|410669794|ref|YP_006922165.1|	-	0.087	13.8	20.7	0.16	13.0	5.6	3.4	3	1	0	3	3	2	0	4Fe-4S	binding	domain
CdhD	PF03599.16	gi|410669795|ref|YP_006922166.1|	-	2.4e-12	46.3	0.0	3.7e-12	45.7	0.0	1.3	1	0	0	1	1	1	1	CO	dehydrogenase/acetyl-CoA	synthase	delta	subunit
MazE_antitoxin	PF04014.18	gi|410669796|ref|YP_006922167.1|	-	0.00042	20.2	0.0	0.00064	19.6	0.0	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DUF2576	PF10845.8	gi|410669796|ref|YP_006922167.1|	-	0.11	12.2	0.3	0.18	11.4	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2576)
CPBP	PF02517.16	gi|410669799|ref|YP_006922170.1|	-	2.5e-17	63.0	4.3	2.5e-17	63.0	4.3	2.4	2	1	0	2	2	2	1	CPBP	intramembrane	metalloprotease
MqsA_antitoxin	PF15731.5	gi|410669800|ref|YP_006922171.1|	-	0.00033	20.8	0.3	0.00037	20.6	0.3	1.1	1	0	0	1	1	1	1	Antitoxin	component	of	bacterial	toxin-antitoxin	system,	MqsA
Lar_restr_allev	PF14354.6	gi|410669800|ref|YP_006922171.1|	-	0.0076	16.6	0.3	0.011	16.1	0.3	1.2	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
Mut7-C	PF01927.16	gi|410669800|ref|YP_006922171.1|	-	0.03	14.4	0.1	0.035	14.2	0.1	1.1	1	0	0	1	1	1	0	Mut7-C	RNAse	domain
Trm112p	PF03966.16	gi|410669800|ref|YP_006922171.1|	-	0.058	14.0	0.2	0.21	12.2	0.2	1.9	1	1	0	1	1	1	0	Trm112p-like	protein
YokU	PF14122.6	gi|410669800|ref|YP_006922171.1|	-	0.11	12.5	0.1	0.14	12.2	0.1	1.3	1	0	0	1	1	1	0	YokU-like	protein,	putative	antitoxin
Prok-RING_1	PF14446.6	gi|410669800|ref|YP_006922171.1|	-	0.28	11.2	2.4	3.2	7.8	2.4	2.1	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zf-C4_ClpX	PF06689.13	gi|410669800|ref|YP_006922171.1|	-	1	9.3	8.6	21	5.1	8.6	2.4	1	1	0	1	1	1	0	ClpX	C4-type	zinc	finger
HicB_lk_antitox	PF15919.5	gi|410669801|ref|YP_006922172.1|	-	5.4e-12	45.9	0.0	5.9e-12	45.8	0.0	1.1	1	0	0	1	1	1	1	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
DUF1902	PF08972.11	gi|410669801|ref|YP_006922172.1|	-	0.00022	21.1	0.0	0.00023	21.1	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1902)
HicA_toxin	PF07927.12	gi|410669802|ref|YP_006922173.1|	-	4.5e-19	68.2	0.6	5.4e-19	68.0	0.6	1.1	1	0	0	1	1	1	1	HicA	toxin	of	bacterial	toxin-antitoxin,
TrmB	PF01978.19	gi|410669802|ref|YP_006922173.1|	-	0.069	13.0	0.0	0.18	11.7	0.0	1.6	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
SRA1	PF07304.11	gi|410669804|ref|YP_006922175.1|	-	0.12	12.2	0.4	0.19	11.5	0.4	1.2	1	0	0	1	1	1	0	Steroid	receptor	RNA	activator	(SRA1)
LOH1CR12	PF10158.9	gi|410669805|ref|YP_006922176.1|	-	0.0028	17.7	0.0	0.005	16.9	0.0	1.4	1	0	0	1	1	1	1	Tumour	suppressor	protein
HARP	PF07443.13	gi|410669805|ref|YP_006922176.1|	-	0.049	13.3	0.0	0.14	11.8	0.0	1.8	1	0	0	1	1	1	0	HepA-related	protein	(HARP)
GDP_Man_Dehyd	PF16363.5	gi|410669807|ref|YP_006922178.1|	-	0.035	13.5	0.2	0.039	13.4	0.2	1.1	1	0	0	1	1	1	0	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|410669807|ref|YP_006922178.1|	-	0.04	13.4	0.1	0.04	13.4	0.1	1.1	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
DUF3674	PF12426.8	gi|410669808|ref|YP_006922179.1|	-	0.073	13.1	0.2	0.11	12.5	0.2	1.3	1	0	0	1	1	1	0	RNA	dependent	RNA	polymerase
HicB_lk_antitox	PF15919.5	gi|410669809|ref|YP_006922180.1|	-	1.5e-11	44.4	0.1	1.7e-11	44.3	0.1	1.0	1	0	0	1	1	1	1	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
Omega-toxin	PF06357.11	gi|410669809|ref|YP_006922180.1|	-	0.048	13.5	0.2	0.069	13.0	0.2	1.2	1	0	0	1	1	1	0	Omega-atracotoxin
UPF0175	PF03683.13	gi|410669810|ref|YP_006922181.1|	-	1.9e-06	27.5	0.1	2.3e-06	27.2	0.1	1.3	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
DUF4143	PF13635.6	gi|410669811|ref|YP_006922182.1|	-	2.9e-13	50.0	0.1	4e-13	49.6	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4143)
MMS1_N	PF10433.9	gi|410669811|ref|YP_006922182.1|	-	0.12	11.0	0.1	0.2	10.3	0.1	1.5	1	1	0	1	1	1	0	Mono-functional	DNA-alkylating	methyl	methanesulfonate	N-term
PBP_like	PF12727.7	gi|410669811|ref|YP_006922182.1|	-	0.16	11.1	0.0	0.39	9.8	0.0	1.7	2	0	0	2	2	2	0	PBP	superfamily	domain
DUF772	PF05598.11	gi|410669812|ref|YP_006922183.1|	-	3.9e-22	78.1	0.1	1e-21	76.7	0.0	1.7	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|410669812|ref|YP_006922183.1|	-	1.5e-14	54.2	0.1	2.9e-14	53.2	0.1	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_4	PF13359.6	gi|410669812|ref|YP_006922183.1|	-	0.00025	20.8	0.1	0.00045	19.9	0.1	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1_3	PF13612.6	gi|410669812|ref|YP_006922183.1|	-	0.00048	20.2	0.1	0.001	19.1	0.1	1.6	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|410669812|ref|YP_006922183.1|	-	0.036	14.3	0.2	0.069	13.4	0.2	1.4	1	0	0	1	1	1	0	Transposase	DDE	domain
Polbeta	PF18765.1	gi|410669813|ref|YP_006922184.1|	-	1.9e-11	43.9	0.0	2.3e-11	43.6	0.0	1.1	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
NTP_transf_2	PF01909.23	gi|410669813|ref|YP_006922184.1|	-	6e-10	39.3	0.1	7.3e-10	39.0	0.1	1.1	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
UPF0175	PF03683.13	gi|410669815|ref|YP_006922186.1|	-	4.9e-06	26.2	0.1	6.8e-06	25.7	0.1	1.3	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
FeoC	PF09012.10	gi|410669815|ref|YP_006922186.1|	-	0.076	13.1	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
DUF86	PF01934.17	gi|410669816|ref|YP_006922187.1|	-	4.9e-22	78.0	0.1	5.8e-22	77.8	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
NTP_transf_2	PF01909.23	gi|410669817|ref|YP_006922188.1|	-	3.4e-13	49.7	1.2	3.7e-13	49.6	1.2	1.0	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|410669817|ref|YP_006922188.1|	-	1.8e-10	40.8	0.4	2e-10	40.6	0.4	1.0	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
PufQ	PF05398.11	gi|410669820|ref|YP_006922191.1|	-	0.058	13.5	4.4	0.15	12.2	0.1	2.0	1	1	1	2	2	2	0	PufQ	cytochrome	subunit
COX4_pro_2	PF07835.12	gi|410669820|ref|YP_006922191.1|	-	0.062	13.4	0.2	0.062	13.4	0.2	1.8	2	0	0	2	2	2	0	Bacterial	aa3	type	cytochrome	c	oxidase	subunit	IV
DUF202	PF02656.15	gi|410669820|ref|YP_006922191.1|	-	0.082	13.4	1.0	0.095	13.2	1.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
Spo7	PF03907.13	gi|410669820|ref|YP_006922191.1|	-	0.11	12.0	2.0	0.12	11.8	2.0	1.0	1	0	0	1	1	1	0	Spo7-like	protein
DHHC	PF01529.20	gi|410669820|ref|YP_006922191.1|	-	0.85	9.7	4.8	0.91	9.6	4.8	1.0	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
Beta_helix	PF13229.6	gi|410669821|ref|YP_006922192.1|	-	6.7e-37	126.8	94.4	5.2e-15	55.6	21.9	4.7	2	1	2	5	5	5	4	Right	handed	beta	helix	region
NosD	PF05048.13	gi|410669821|ref|YP_006922192.1|	-	1.6e-34	119.3	82.1	4.5e-18	65.4	24.3	4.3	1	1	3	4	4	4	4	Periplasmic	copper-binding	protein	(NosD)
Pectate_lyase_3	PF12708.7	gi|410669821|ref|YP_006922192.1|	-	5.5e-05	23.1	54.1	0.042	13.7	5.7	5.7	2	1	3	5	5	5	4	Pectate	lyase	superfamily	protein
EamA	PF00892.20	gi|410669822|ref|YP_006922193.1|	-	9.8e-17	61.4	42.8	1.2e-08	35.3	19.3	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
TMEM234	PF10639.9	gi|410669822|ref|YP_006922193.1|	-	0.0017	18.3	7.7	0.11	12.6	0.9	2.8	2	1	0	2	2	2	2	Putative	transmembrane	family	234
GyrI-like	PF06445.15	gi|410669823|ref|YP_006922194.1|	-	1e-28	100.6	0.0	1.1e-28	100.5	0.0	1.0	1	0	0	1	1	1	1	GyrI-like	small	molecule	binding	domain
Cass2	PF14526.6	gi|410669823|ref|YP_006922194.1|	-	2.1e-14	53.9	0.0	2.4e-14	53.7	0.0	1.0	1	0	0	1	1	1	1	Integron-associated	effector	binding	protein
OrfB_IS605	PF01385.19	gi|410669825|ref|YP_006922196.1|	-	5.7e-29	100.8	0.9	1.3e-28	99.6	0.9	1.5	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|410669825|ref|YP_006922196.1|	-	1.9e-22	79.0	0.2	3.5e-22	78.1	0.2	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.8	gi|410669825|ref|YP_006922196.1|	-	1.1e-18	66.5	0.7	3.8e-18	64.7	0.3	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
DUF488	PF04343.13	gi|410669825|ref|YP_006922196.1|	-	0.011	16.3	0.1	0.03	14.9	0.1	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF488
RuvC_1	PF18516.1	gi|410669825|ref|YP_006922196.1|	-	0.031	13.5	2.0	0.035	13.3	0.4	1.8	2	0	0	2	2	2	0	RuvC	nuclease	domain
M_domain	PF12938.7	gi|410669825|ref|YP_006922196.1|	-	0.16	11.7	1.2	0.29	10.9	1.2	1.3	1	0	0	1	1	1	0	M	domain	of	GW182
zinc_ribbon_2	PF13240.6	gi|410669825|ref|YP_006922196.1|	-	0.21	11.4	1.9	17	5.3	0.1	2.6	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-RanBP	PF00641.18	gi|410669825|ref|YP_006922196.1|	-	0.5	9.7	4.2	5	6.5	1.1	2.5	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
Phage_integrase	PF00589.22	gi|410669827|ref|YP_006922198.1|	-	3e-06	27.1	0.0	1.4e-05	24.9	0.0	2.1	1	1	0	1	1	1	1	Phage	integrase	family
Linker_histone	PF00538.19	gi|410669827|ref|YP_006922198.1|	-	0.1	13.0	0.5	0.39	11.1	0.2	2.2	3	0	0	3	3	3	0	linker	histone	H1	and	H5	family
Resolvase	PF00239.21	gi|410669828|ref|YP_006922199.1|	-	1.4e-44	151.7	0.4	1.8e-44	151.4	0.4	1.1	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
HTH_7	PF02796.15	gi|410669828|ref|YP_006922199.1|	-	0.0078	16.3	0.0	0.016	15.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_28	PF13518.6	gi|410669828|ref|YP_006922199.1|	-	0.014	15.5	0.0	0.05	13.7	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF1724	PF08350.10	gi|410669830|ref|YP_006922201.1|	-	2.9e-19	68.9	0.1	5.2e-19	68.1	0.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
DUF1699	PF08004.11	gi|410669831|ref|YP_006922202.1|	-	5.1e-62	207.3	0.2	5.7e-62	207.2	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1699)
DUF1724	PF08350.10	gi|410669832|ref|YP_006922203.1|	-	1.7e-22	79.3	0.2	3.6e-22	78.3	0.2	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
DUF1724	PF08350.10	gi|410669833|ref|YP_006922204.1|	-	7.3e-20	70.9	0.9	1.7e-19	69.7	0.9	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
DUF1724	PF08350.10	gi|410669834|ref|YP_006922205.1|	-	1.8e-23	82.4	0.3	1.8e-23	82.4	0.3	2.0	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF1724)
PLN_propep	PF16485.5	gi|410669834|ref|YP_006922205.1|	-	0.033	13.9	0.2	0.18	11.6	0.1	2.1	2	0	0	2	2	2	0	Protealysin	propeptide
DUF5518	PF17647.1	gi|410669836|ref|YP_006922207.1|	-	0.13	12.4	0.2	0.13	12.4	0.2	2.3	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5518)
AbiJ_NTD4	PF18863.1	gi|410669838|ref|YP_006922209.1|	-	0.26	11.7	7.8	0.093	13.2	4.5	1.8	2	1	0	2	2	2	0	AbiJ	N-terminal	domain	4
N6_Mtase	PF02384.16	gi|410669839|ref|YP_006922210.1|	-	8.5e-105	350.5	0.0	1.1e-104	350.1	0.0	1.1	1	0	0	1	1	1	1	N-6	DNA	Methylase
HsdM_N	PF12161.8	gi|410669839|ref|YP_006922210.1|	-	4.1e-31	108.4	0.6	4.1e-31	108.4	0.6	2.1	2	0	0	2	2	2	1	HsdM	N-terminal	domain
UPF0020	PF01170.18	gi|410669839|ref|YP_006922210.1|	-	0.00056	19.6	0.0	0.0011	18.7	0.0	1.5	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_31	PF13847.6	gi|410669839|ref|YP_006922210.1|	-	0.041	13.7	0.1	0.63	9.8	0.0	2.7	2	1	0	2	2	2	0	Methyltransferase	domain
LPD1	PF18796.1	gi|410669839|ref|YP_006922210.1|	-	0.08	13.1	3.3	0.24	11.5	0.1	3.3	5	0	0	5	5	5	0	Large	polyvalent	protein-associated	domain	1
Methylase_S	PF01420.19	gi|410669840|ref|YP_006922211.1|	-	6.4e-39	133.9	13.0	2.9e-20	73.1	4.7	2.2	2	0	0	2	2	2	2	Type	I	restriction	modification	DNA	specificity	domain
GPS2_interact	PF15784.5	gi|410669840|ref|YP_006922211.1|	-	0.74	10.3	3.1	17	5.9	0.1	2.4	2	0	0	2	2	2	0	G-protein	pathway	suppressor	2-interacting	domain
AAA_15	PF13175.6	gi|410669841|ref|YP_006922212.1|	-	6.7e-19	68.8	29.3	6.7e-19	68.8	29.3	3.2	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|410669841|ref|YP_006922212.1|	-	9.5e-18	65.0	8.1	4.2e-13	49.8	0.5	2.5	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF2813	PF11398.8	gi|410669841|ref|YP_006922212.1|	-	1e-06	28.3	1.1	0.0024	17.2	0.1	2.5	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2813)
ABC_tran	PF00005.27	gi|410669841|ref|YP_006922212.1|	-	0.0066	17.0	0.2	2	8.9	0.0	3.4	3	0	0	3	3	3	1	ABC	transporter
AAA_27	PF13514.6	gi|410669841|ref|YP_006922212.1|	-	0.0094	15.6	0.0	0.02	14.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|410669841|ref|YP_006922212.1|	-	0.011	15.2	10.6	0.061	12.7	10.6	2.1	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|410669841|ref|YP_006922212.1|	-	7.5	7.0	31.9	2.7e+03	-1.3	31.9	3.5	1	1	0	1	1	1	0	AAA	domain
SWI2_SNF2	PF18766.1	gi|410669842|ref|YP_006922213.1|	-	2.4e-78	262.9	0.3	4.9e-78	261.9	0.3	1.6	1	0	0	1	1	1	1	SWI2/SNF2	ATPase
HSDR_N	PF04313.14	gi|410669842|ref|YP_006922213.1|	-	2.8e-31	109.0	1.5	2.8e-31	109.0	1.5	3.4	3	2	0	3	3	3	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
ResIII	PF04851.15	gi|410669842|ref|YP_006922213.1|	-	5.8e-19	68.7	2.0	1e-18	68.0	0.1	2.4	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DUF3387	PF11867.8	gi|410669842|ref|YP_006922213.1|	-	5.8e-18	65.3	7.6	1e-17	64.6	7.6	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3387)
SNF2_N	PF00176.23	gi|410669842|ref|YP_006922213.1|	-	0.019	13.7	0.1	0.15	10.7	0.1	2.2	1	1	0	1	1	1	0	SNF2	family	N-terminal	domain
RE_XamI	PF09572.10	gi|410669842|ref|YP_006922213.1|	-	0.021	14.5	0.5	0.65	9.6	0.1	2.9	3	0	0	3	3	3	0	XamI	restriction	endonuclease
DUF45	PF01863.17	gi|410669843|ref|YP_006922214.1|	-	2.8e-54	184.3	4.4	3.2e-54	184.1	4.4	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF45
WLM	PF08325.10	gi|410669843|ref|YP_006922214.1|	-	0.00072	19.7	0.1	0.0014	18.7	0.1	1.4	1	0	0	1	1	1	1	WLM	domain
SprT-like	PF10263.9	gi|410669843|ref|YP_006922214.1|	-	0.045	13.6	0.1	0.14	12.0	0.0	1.8	2	0	0	2	2	2	0	SprT-like	family
Radical_SAM	PF04055.21	gi|410669845|ref|YP_006922216.1|	-	7.7e-10	39.4	0.1	1.1e-09	38.9	0.1	1.2	1	0	0	1	1	1	1	Radical	SAM	superfamily
DUF5131	PF07505.11	gi|410669845|ref|YP_006922216.1|	-	1.9e-05	24.2	0.0	2.5e-05	23.9	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF5131)
Fer4_12	PF13353.6	gi|410669845|ref|YP_006922216.1|	-	0.016	15.5	0.2	0.066	13.5	0.0	2.0	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|410669845|ref|YP_006922216.1|	-	0.033	14.3	0.3	0.14	12.3	0.1	2.1	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
DUF1848	PF08902.11	gi|410669845|ref|YP_006922216.1|	-	1.1	9.0	12.9	3.3	7.4	5.5	3.2	2	1	2	4	4	4	0	Domain	of	unknown	function	(DUF1848)
KaiA	PF07688.12	gi|410669846|ref|YP_006922217.1|	-	0.032	14.4	0.2	0.037	14.2	0.2	1.0	1	0	0	1	1	1	0	KaiA	C-terminal	domain
HSCB_C	PF07743.13	gi|410669846|ref|YP_006922217.1|	-	0.039	14.5	0.3	0.044	14.3	0.3	1.1	1	0	0	1	1	1	0	HSCB	C-terminal	oligomerisation	domain
BOFC_N	PF08977.10	gi|410669847|ref|YP_006922218.1|	-	0.14	12.2	0.1	3.5	7.7	0.1	2.4	2	0	0	2	2	2	0	Bypass	of	Forespore	C,	N	terminal
ABC_trans_CmpB	PF06541.11	gi|410669848|ref|YP_006922219.1|	-	0.065	13.5	1.6	0.088	13.1	1.7	1.3	1	1	0	1	1	1	0	Putative	ABC-transporter	type	IV
TRAM	PF01938.20	gi|410669849|ref|YP_006922220.1|	-	1.3e-14	53.9	1.0	1.4e-14	53.8	1.0	1.0	1	0	0	1	1	1	1	TRAM	domain
Hexapep	PF00132.24	gi|410669849|ref|YP_006922220.1|	-	0.017	14.9	0.4	0.04	13.7	0.2	1.8	1	1	1	2	2	2	0	Bacterial	transferase	hexapeptide	(six	repeats)
Glug	PF07581.12	gi|410669850|ref|YP_006922221.1|	-	4.7e-42	139.6	161.9	1.9e-05	24.8	2.5	17.1	15	1	1	16	16	16	14	The	GLUG	motif
Peptidase_M26_N	PF05342.14	gi|410669850|ref|YP_006922221.1|	-	0.00019	21.0	7.5	0.021	14.3	0.6	3.3	3	0	0	3	3	3	2	M26	IgA1-specific	Metallo-endopeptidase	N-terminal	region
Tfb5	PF06331.12	gi|410669852|ref|YP_006922223.1|	-	0.065	13.2	0.1	0.12	12.4	0.1	1.4	1	0	0	1	1	1	0	Transcription	factor	TFIIH	complex	subunit	Tfb5
HIPIP	PF01355.17	gi|410669852|ref|YP_006922223.1|	-	0.12	12.8	0.0	0.32	11.4	0.0	1.7	1	0	0	1	1	1	0	High	potential	iron-sulfur	protein
Spore_Cse60	PF10957.8	gi|410669854|ref|YP_006922225.1|	-	0.028	14.4	0.2	0.073	13.1	0.2	1.7	1	0	0	1	1	1	0	Sporulation	protein	Cse60
DUF366	PF04017.12	gi|410669854|ref|YP_006922225.1|	-	0.036	13.5	0.7	0.1	12.1	0.2	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF366)
UPF0122	PF04297.14	gi|410669855|ref|YP_006922226.1|	-	0.044	14.0	0.6	0.29	11.4	0.4	2.1	1	1	0	2	2	2	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
Aconitase_C	PF00694.19	gi|410669856|ref|YP_006922227.1|	-	0.13	12.6	0.1	0.31	11.4	0.1	1.8	1	1	0	1	1	1	0	Aconitase	C-terminal	domain
DUF2722	PF10846.8	gi|410669856|ref|YP_006922227.1|	-	0.58	9.0	3.3	0.68	8.8	3.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2722)
DNA_pol_phi	PF04931.13	gi|410669856|ref|YP_006922227.1|	-	9.6	4.2	9.5	9.9	4.1	9.5	1.1	1	0	0	1	1	1	0	DNA	polymerase	phi
Fibin	PF15819.5	gi|410669858|ref|YP_006922229.1|	-	0.034	13.9	0.3	0.037	13.8	0.3	1.0	1	0	0	1	1	1	0	Fin	bud	initiation	factor	homologue
DUF2316	PF10078.9	gi|410669858|ref|YP_006922229.1|	-	0.047	13.9	0.7	0.048	13.9	0.7	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2316)
N_formyltrans_C	PF18216.1	gi|410669859|ref|YP_006922230.1|	-	0.26	11.0	1.8	0.53	10.0	0.1	2.3	2	0	0	2	2	2	0	N-formyltransferase	dimerization	C-terminal	domain
UbiA	PF01040.18	gi|410669860|ref|YP_006922231.1|	-	6.5e-18	64.9	24.8	2.1e-17	63.3	24.8	1.7	1	1	0	1	1	1	1	UbiA	prenyltransferase	family
ABC_membrane_3	PF13748.6	gi|410669860|ref|YP_006922231.1|	-	0.053	12.8	0.2	0.13	11.5	0.2	1.5	1	0	0	1	1	1	0	ABC	transporter	transmembrane	region
AglB_L1	PF18079.1	gi|410669862|ref|YP_006922233.1|	-	0.017	15.4	0.1	7.9	6.8	0.0	2.5	2	0	0	2	2	2	0	Archaeal	glycosylation	protein	B	long	peripheral	domain
Big_7	PF17957.1	gi|410669862|ref|YP_006922233.1|	-	2	9.2	9.8	1.5	9.6	0.8	3.0	3	0	0	3	3	3	0	Bacterial	Ig	domain
RP853	PF17542.2	gi|410669863|ref|YP_006922234.1|	-	0.029	13.5	0.4	0.038	13.1	0.4	1.1	1	0	0	1	1	1	0	Uncharacterized	RP853
Epimerase	PF01370.21	gi|410669864|ref|YP_006922235.1|	-	5.6e-39	134.0	0.0	6.7e-39	133.8	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|410669864|ref|YP_006922235.1|	-	3.4e-34	118.7	0.0	1.1e-33	117.1	0.0	1.7	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|410669864|ref|YP_006922235.1|	-	9.9e-14	51.0	0.0	1.3e-13	50.6	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|410669864|ref|YP_006922235.1|	-	5.1e-13	48.8	0.0	6.8e-12	45.1	0.0	2.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|410669864|ref|YP_006922235.1|	-	1.5e-07	30.9	0.0	8.9e-07	28.3	0.0	1.9	1	1	0	1	1	1	1	Male	sterility	protein
RmlD_sub_bind	PF04321.17	gi|410669864|ref|YP_006922235.1|	-	2.7e-07	30.0	0.0	3.3e-07	29.7	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.6	gi|410669864|ref|YP_006922235.1|	-	5.2e-07	29.7	0.0	7.4e-07	29.2	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|410669864|ref|YP_006922235.1|	-	0.016	14.8	0.0	0.05	13.2	0.0	1.8	2	0	0	2	2	2	0	NmrA-like	family
DDE_Tnp_1	PF01609.21	gi|410669865|ref|YP_006922236.1|	-	9.7e-16	58.0	3.6	9.7e-16	58.0	3.6	1.9	2	0	0	2	2	2	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|410669865|ref|YP_006922236.1|	-	0.00016	21.6	0.1	0.00039	20.4	0.1	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1_2	PF13586.6	gi|410669865|ref|YP_006922236.1|	-	0.0004	20.7	0.1	0.0004	20.7	0.1	2.5	2	0	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1_3	PF13612.6	gi|410669865|ref|YP_006922236.1|	-	0.02	14.9	0.8	0.046	13.7	0.1	1.9	2	0	0	2	2	2	0	Transposase	DDE	domain
DUF1616	PF07760.11	gi|410669866|ref|YP_006922237.1|	-	3.6e-107	358.1	0.8	4.2e-107	357.9	0.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
7TMR-DISM_7TM	PF07695.11	gi|410669866|ref|YP_006922237.1|	-	0.91	9.4	15.0	6	6.7	0.5	2.9	1	1	2	3	3	3	0	7TM	diverse	intracellular	signalling
Glycos_transf_2	PF00535.26	gi|410669867|ref|YP_006922238.1|	-	2.4e-39	134.8	0.0	5.6e-21	75.1	0.0	2.2	2	0	0	2	2	2	2	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|410669867|ref|YP_006922238.1|	-	7e-10	39.2	0.1	0.00042	20.3	0.0	2.2	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|410669867|ref|YP_006922238.1|	-	9.4e-09	35.7	0.0	0.0023	18.4	0.0	2.4	2	0	0	2	2	2	2	Glycosyl	transferase	family	2
Glyco_tranf_2_2	PF10111.9	gi|410669867|ref|YP_006922238.1|	-	4.5e-05	23.1	0.1	0.083	12.3	0.0	2.2	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Baculo_p26	PF04766.12	gi|410669867|ref|YP_006922238.1|	-	0.035	13.6	0.4	0.098	12.1	0.3	1.8	1	1	0	1	1	1	0	Nucleopolyhedrovirus	p26	protein
Beta_helix	PF13229.6	gi|410669868|ref|YP_006922239.1|	-	8.6e-43	145.9	139.3	5.8e-14	52.2	12.1	6.2	2	2	5	7	7	7	7	Right	handed	beta	helix	region
NosD	PF05048.13	gi|410669868|ref|YP_006922239.1|	-	3.3e-17	62.6	63.7	3.9e-05	23.0	16.0	6.4	2	2	3	5	5	5	5	Periplasmic	copper-binding	protein	(NosD)
Pectate_lyase_3	PF12708.7	gi|410669868|ref|YP_006922239.1|	-	1.2e-14	54.7	54.3	1.4e-07	31.6	13.0	8.0	4	2	0	4	4	4	3	Pectate	lyase	superfamily	protein
Adap_comp_sub	PF00928.21	gi|410669868|ref|YP_006922239.1|	-	0.0064	15.9	0.0	0.013	14.9	0.0	1.5	1	0	0	1	1	1	1	Adaptor	complexes	medium	subunit	family
BMC	PF00936.19	gi|410669868|ref|YP_006922239.1|	-	0.066	13.2	8.0	2.5	8.2	0.4	3.9	4	0	0	4	4	4	0	BMC	domain
Beta_helix	PF13229.6	gi|410669870|ref|YP_006922241.1|	-	2.2e-37	128.3	119.1	1.3e-10	41.3	14.5	6.6	2	2	5	7	7	7	7	Right	handed	beta	helix	region
NosD	PF05048.13	gi|410669870|ref|YP_006922241.1|	-	5.1e-17	61.9	90.2	0.00023	20.5	26.7	6.6	2	2	3	5	5	5	5	Periplasmic	copper-binding	protein	(NosD)
Pectate_lyase_3	PF12708.7	gi|410669870|ref|YP_006922241.1|	-	1.9e-12	47.5	59.6	6.3e-06	26.2	10.0	6.2	3	2	0	4	4	4	3	Pectate	lyase	superfamily	protein
PKD	PF00801.20	gi|410669870|ref|YP_006922241.1|	-	1.5e-09	37.6	0.5	5.6e-09	35.7	0.2	2.2	2	0	0	2	2	2	1	PKD	domain
DUF3285	PF11688.8	gi|410669871|ref|YP_006922242.1|	-	0.011	15.6	0.1	0.017	15.0	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3285)
TMEM132D_C	PF15706.5	gi|410669871|ref|YP_006922242.1|	-	0.031	14.1	0.3	0.04	13.7	0.0	1.5	2	0	0	2	2	2	0	Mature	oligodendrocyte	transmembrane	protein,	TMEM132D,	C-term
DUF5325	PF17259.2	gi|410669871|ref|YP_006922242.1|	-	0.073	13.0	1.8	0.095	12.6	1.8	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5325)
Beta_helix	PF13229.6	gi|410669872|ref|YP_006922243.1|	-	1.1e-39	135.8	104.1	4.8e-13	49.3	11.4	6.7	2	2	4	6	6	6	6	Right	handed	beta	helix	region
NosD	PF05048.13	gi|410669872|ref|YP_006922243.1|	-	1.7e-16	60.3	85.2	1.5e-05	24.4	9.6	6.9	2	2	4	6	6	6	6	Periplasmic	copper-binding	protein	(NosD)
PKD	PF00801.20	gi|410669872|ref|YP_006922243.1|	-	6e-12	45.2	0.7	1.9e-11	43.6	0.7	1.9	1	0	0	1	1	1	1	PKD	domain
Pectate_lyase_3	PF12708.7	gi|410669872|ref|YP_006922243.1|	-	5.5e-11	42.7	53.0	7.3e-07	29.2	16.3	7.4	3	2	1	4	4	4	4	Pectate	lyase	superfamily	protein
Lactamase_B_5	PF14597.6	gi|410669872|ref|YP_006922243.1|	-	0.084	12.4	1.5	13	5.2	0.1	2.9	3	0	0	3	3	3	0	Metallo-beta-lactamase	superfamily
Beta_helix	PF13229.6	gi|410669873|ref|YP_006922244.1|	-	1.5e-26	93.2	62.4	1.2e-13	51.2	17.4	3.3	1	1	2	3	3	3	3	Right	handed	beta	helix	region
NosD	PF05048.13	gi|410669873|ref|YP_006922244.1|	-	5.3e-10	39.0	34.0	1.5e-07	31.0	7.6	3.5	1	1	2	3	3	3	3	Periplasmic	copper-binding	protein	(NosD)
Kelch_6	PF13964.6	gi|410669873|ref|YP_006922244.1|	-	0.053	13.8	0.8	2.7	8.4	0.1	3.0	2	0	0	2	2	2	0	Kelch	motif
DUF354	PF04007.12	gi|410669874|ref|YP_006922245.1|	-	1.1e-20	74.0	0.0	1.3e-20	73.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF354)
Polysacc_deac_1	PF01522.21	gi|410669875|ref|YP_006922246.1|	-	6e-05	22.9	0.0	0.003	17.4	0.0	2.9	2	1	0	2	2	2	1	Polysaccharide	deacetylase
DUF2334	PF10096.9	gi|410669875|ref|YP_006922246.1|	-	0.00013	21.7	0.0	0.0089	15.7	0.0	2.7	3	0	0	3	3	3	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
Acetyltransf_6	PF13480.7	gi|410669876|ref|YP_006922247.1|	-	2e-07	31.2	0.0	5.3e-07	29.9	0.0	1.6	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
HTH_17	PF12728.7	gi|410669876|ref|YP_006922247.1|	-	0.15	12.3	0.0	0.48	10.6	0.0	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain
Asn_synthase	PF00733.21	gi|410669877|ref|YP_006922248.1|	-	3.7e-76	257.1	0.2	4.6e-76	256.8	0.2	1.1	1	0	0	1	1	1	1	Asparagine	synthase
GATase_7	PF13537.6	gi|410669877|ref|YP_006922248.1|	-	2.3e-50	169.6	0.0	3.6e-50	169.0	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.6	gi|410669877|ref|YP_006922248.1|	-	6e-48	162.4	0.0	1.4e-47	161.2	0.0	1.6	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
DUF3700	PF12481.8	gi|410669877|ref|YP_006922248.1|	-	0.00014	21.4	0.0	0.00024	20.6	0.0	1.4	1	0	0	1	1	1	1	Aluminium	induced	protein
CPBP	PF02517.16	gi|410669880|ref|YP_006922251.1|	-	1.4e-14	54.3	22.4	8.7e-14	51.7	22.4	2.4	1	1	0	1	1	1	1	CPBP	intramembrane	metalloprotease
DUF4834	PF16118.5	gi|410669882|ref|YP_006922253.1|	-	0.014	16.4	0.0	0.015	16.3	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4834)
COX6C	PF02937.15	gi|410669882|ref|YP_006922253.1|	-	0.018	15.1	0.4	0.024	14.8	0.4	1.3	1	0	0	1	1	1	0	Cytochrome	c	oxidase	subunit	VIc
DUF3021	PF11457.8	gi|410669882|ref|YP_006922253.1|	-	0.021	15.1	0.1	0.022	15.1	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3021)
DUF2232	PF09991.9	gi|410669882|ref|YP_006922253.1|	-	0.035	13.3	0.6	0.041	13.1	0.6	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2232)
MWFE	PF15879.5	gi|410669882|ref|YP_006922253.1|	-	0.046	13.9	0.0	0.068	13.4	0.0	1.2	1	0	0	1	1	1	0	NADH-ubiquinone	oxidoreductase	MWFE	subunit
SelK_SelG	PF10961.8	gi|410669882|ref|YP_006922253.1|	-	0.058	14.0	0.1	0.064	13.9	0.1	1.1	1	0	0	1	1	1	0	Selenoprotein	SelK_SelG
FixP_N	PF14715.6	gi|410669882|ref|YP_006922253.1|	-	0.065	13.0	1.7	0.075	12.8	1.7	1.1	1	0	0	1	1	1	0	N-terminal	domain	of	cytochrome	oxidase-cbb3,	FixP
HemY_N	PF07219.13	gi|410669882|ref|YP_006922253.1|	-	0.088	13.0	0.0	0.091	13.0	0.0	1.2	1	0	0	1	1	1	0	HemY	protein	N-terminus
Putative_PNPOx	PF01243.20	gi|410669883|ref|YP_006922254.1|	-	9.8e-08	32.1	0.0	1.4e-07	31.6	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyrid_oxidase_2	PF13883.6	gi|410669883|ref|YP_006922254.1|	-	0.0025	17.8	0.1	0.0033	17.4	0.1	1.3	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.7	gi|410669883|ref|YP_006922254.1|	-	0.13	12.2	0.0	0.18	11.8	0.0	1.2	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
DUF3303	PF11746.8	gi|410669884|ref|YP_006922255.1|	-	5.4e-07	29.8	0.0	6.3e-07	29.6	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3303)
Pyridox_ox_2	PF12900.7	gi|410669886|ref|YP_006922257.1|	-	9.5e-26	90.5	0.0	1.1e-25	90.3	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|410669886|ref|YP_006922257.1|	-	7.6e-14	51.7	0.0	1.1e-13	51.2	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
FMN_bind_2	PF04299.12	gi|410669886|ref|YP_006922257.1|	-	0.001	18.8	0.1	0.0068	16.1	0.1	1.9	1	1	0	1	1	1	1	Putative	FMN-binding	domain
Pyrid_oxidase_2	PF13883.6	gi|410669886|ref|YP_006922257.1|	-	0.017	15.1	0.0	0.022	14.7	0.0	1.1	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
Pyrid_ox_like	PF16242.5	gi|410669886|ref|YP_006922257.1|	-	0.029	14.0	0.0	0.34	10.5	0.0	2.0	1	1	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase	like
PSI_PsaE	PF02427.17	gi|410669886|ref|YP_006922257.1|	-	0.043	13.5	0.1	0.11	12.2	0.0	1.7	2	0	0	2	2	2	0	Photosystem	I	reaction	centre	subunit	IV	/	PsaE
Fasciclin	PF02469.22	gi|410669888|ref|YP_006922259.1|	-	2e-39	134.7	0.1	2.7e-39	134.3	0.1	1.2	1	0	0	1	1	1	1	Fasciclin	domain
SBP_bac_3	PF00497.20	gi|410669888|ref|YP_006922259.1|	-	0.0032	16.9	0.3	0.0039	16.7	0.3	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
DUF4097	PF13349.6	gi|410669888|ref|YP_006922259.1|	-	0.054	12.8	0.6	0.084	12.2	0.6	1.2	1	0	0	1	1	1	0	Putative	adhesin
Fasciclin	PF02469.22	gi|410669889|ref|YP_006922260.1|	-	1.1e-12	48.3	1.4	1.2e-12	48.2	1.4	1.0	1	0	0	1	1	1	1	Fasciclin	domain
DUF4097	PF13349.6	gi|410669889|ref|YP_006922260.1|	-	0.0072	15.7	1.0	0.0085	15.5	1.0	1.0	1	0	0	1	1	1	1	Putative	adhesin
DUF211	PF02680.14	gi|410669889|ref|YP_006922260.1|	-	0.11	12.7	2.7	0.16	12.2	2.7	1.4	1	1	0	1	1	1	0	Uncharacterized	ArCR,	COG1888
DUF169	PF02596.15	gi|410669890|ref|YP_006922261.1|	-	1.3e-57	195.0	0.1	1.5e-57	194.9	0.1	1.0	1	0	0	1	1	1	1	Uncharacterised	ArCR,	COG2043
Arch_flagellin	PF01917.16	gi|410669891|ref|YP_006922262.1|	-	6.7e-13	49.1	2.7	6.7e-13	49.1	2.7	1.9	2	0	0	2	2	2	1	Archaebacterial	flagellin
DUF3774	PF12609.8	gi|410669891|ref|YP_006922262.1|	-	0.11	13.5	0.9	0.32	12.0	0.9	1.8	1	0	0	1	1	1	0	Wound-induced	protein
Nitro_FeMo-Co	PF02579.17	gi|410669892|ref|YP_006922263.1|	-	0.0016	18.8	0.0	0.0016	18.8	0.0	1.1	1	0	0	1	1	1	1	Dinitrogenase	iron-molybdenum	cofactor
PspC	PF04024.12	gi|410669897|ref|YP_006922268.1|	-	2.1e-20	72.2	0.3	2.1e-20	72.2	0.3	2.1	2	0	0	2	2	2	1	PspC	domain
DUF2848	PF11010.8	gi|410669897|ref|YP_006922268.1|	-	0.091	12.4	0.0	0.12	12.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2848)
DUF4574	PF15141.6	gi|410669897|ref|YP_006922268.1|	-	0.1	12.5	0.0	0.23	11.4	0.0	1.6	1	0	0	1	1	1	0	Ubiquinol-cytochrome-c	reductase	complex	assembly	factor	3
DUF3784	PF12650.7	gi|410669897|ref|YP_006922268.1|	-	0.5	10.6	7.8	0.14	12.4	1.2	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3784)
VirB3	PF05101.13	gi|410669897|ref|YP_006922268.1|	-	7.6	6.8	11.7	63	3.9	0.0	2.3	2	0	0	2	2	2	0	Type	IV	secretory	pathway,	VirB3-like	protein
Phage_holin_3_6	PF07332.11	gi|410669897|ref|YP_006922268.1|	-	8.2	6.5	7.7	4.1	7.5	3.3	2.1	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Prismane	PF03063.20	gi|410669900|ref|YP_006922271.1|	-	9.8e-128	427.0	0.0	1.1e-127	426.8	0.0	1.0	1	0	0	1	1	1	1	Prismane/CO	dehydrogenase	family
PGDYG	PF14083.6	gi|410669900|ref|YP_006922271.1|	-	0.079	13.2	0.1	0.17	12.1	0.1	1.5	1	0	0	1	1	1	0	PGDYG	protein
PfkB	PF00294.24	gi|410669903|ref|YP_006922274.1|	-	1.2e-44	152.8	0.0	1.4e-44	152.6	0.0	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.12	gi|410669903|ref|YP_006922274.1|	-	2.3e-08	33.7	0.1	3.6e-08	33.1	0.1	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
Carb_kinase	PF01256.17	gi|410669903|ref|YP_006922274.1|	-	0.0014	18.1	0.1	0.002	17.6	0.1	1.1	1	0	0	1	1	1	1	Carbohydrate	kinase
AHSP	PF09236.10	gi|410669903|ref|YP_006922274.1|	-	0.086	13.3	0.3	0.37	11.3	0.1	2.0	2	0	0	2	2	2	0	Alpha-haemoglobin	stabilising	protein
Phosphorylase	PF00343.20	gi|410669904|ref|YP_006922275.1|	-	2.8e-33	115.2	0.2	1.5e-19	69.8	0.0	3.9	2	1	1	4	4	4	3	Carbohydrate	phosphorylase
YhzD	PF14120.6	gi|410669904|ref|YP_006922275.1|	-	0.041	14.0	0.1	0.15	12.2	0.1	2.0	1	0	0	1	1	1	0	YhzD-like	protein
adh_short_C2	PF13561.6	gi|410669905|ref|YP_006922276.1|	-	1.6e-64	217.7	0.1	1.8e-64	217.5	0.1	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|410669905|ref|YP_006922276.1|	-	6.2e-58	195.5	0.5	7.1e-58	195.3	0.5	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|410669905|ref|YP_006922276.1|	-	7.1e-16	58.6	0.1	9.5e-16	58.2	0.1	1.1	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|410669905|ref|YP_006922276.1|	-	0.0019	17.7	0.1	0.0028	17.2	0.1	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Shikimate_DH	PF01488.20	gi|410669905|ref|YP_006922276.1|	-	0.0052	16.8	0.5	0.011	15.8	0.5	1.6	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_10	PF13460.6	gi|410669905|ref|YP_006922276.1|	-	0.0068	16.3	0.1	0.0087	16.0	0.1	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
THF_DHG_CYH_C	PF02882.19	gi|410669905|ref|YP_006922276.1|	-	0.013	14.9	0.3	0.031	13.6	0.3	1.7	1	1	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
DFP	PF04127.15	gi|410669905|ref|YP_006922276.1|	-	0.013	15.3	0.1	0.031	14.1	0.1	1.6	1	0	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
Glyco_trans_4_2	PF13477.6	gi|410669905|ref|YP_006922276.1|	-	0.069	13.2	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
Sacchrp_dh_NADP	PF03435.18	gi|410669905|ref|YP_006922276.1|	-	0.07	13.4	0.1	0.14	12.4	0.1	1.5	2	0	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
LUD_dom	PF02589.15	gi|410669905|ref|YP_006922276.1|	-	0.094	12.4	0.2	0.14	11.8	0.2	1.2	1	0	0	1	1	1	0	LUD	domain
OrfB_IS605	PF01385.19	gi|410669907|ref|YP_006922278.1|	-	1.5e-28	99.4	0.3	2.8e-28	98.5	0.3	1.4	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|410669907|ref|YP_006922278.1|	-	3.4e-25	87.8	0.2	7.7e-25	86.6	0.2	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.8	gi|410669907|ref|YP_006922278.1|	-	9.9e-16	57.0	2.0	2.1e-15	55.9	2.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Zn_ribbon_SprT	PF17283.2	gi|410669907|ref|YP_006922278.1|	-	0.00017	21.4	0.7	0.00017	21.4	0.7	2.2	2	0	0	2	2	2	1	SprT-like	zinc	ribbon	domain
DZR	PF12773.7	gi|410669907|ref|YP_006922278.1|	-	0.00021	21.3	0.5	0.0006	19.8	0.5	1.8	1	0	0	1	1	1	1	Double	zinc	ribbon
RuvC_1	PF18516.1	gi|410669907|ref|YP_006922278.1|	-	0.0017	17.6	1.2	0.0038	16.4	1.2	1.6	1	0	0	1	1	1	1	RuvC	nuclease	domain
zf-ribbon_3	PF13248.6	gi|410669907|ref|YP_006922278.1|	-	0.0018	17.6	2.3	0.017	14.5	2.3	2.4	1	1	0	1	1	1	1	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|410669907|ref|YP_006922278.1|	-	0.01	15.3	0.1	6.1	6.5	0.0	2.5	2	0	0	2	2	2	0	TFIIB	zinc-binding
FbpA	PF05833.11	gi|410669907|ref|YP_006922278.1|	-	0.016	14.0	2.2	0.017	13.9	1.0	1.6	2	0	0	2	2	2	0	Fibronectin-binding	protein	A	N-terminus	(FbpA)
DUF1943	PF09172.11	gi|410669907|ref|YP_006922278.1|	-	0.058	12.6	0.6	0.075	12.3	0.6	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1943)
zf-NADH-PPase	PF09297.11	gi|410669907|ref|YP_006922278.1|	-	0.25	11.0	3.6	0.51	10.1	1.3	2.5	2	1	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Cript	PF10235.9	gi|410669907|ref|YP_006922278.1|	-	0.38	11.4	5.6	0.59	10.7	0.2	2.7	2	0	0	2	2	2	0	Microtubule-associated	protein	CRIPT
zinc_ribbon_2	PF13240.6	gi|410669907|ref|YP_006922278.1|	-	0.96	9.3	5.5	5	7.0	0.2	2.5	1	1	1	2	2	2	0	zinc-ribbon	domain
Y1_Tnp	PF01797.16	gi|410669908|ref|YP_006922279.1|	-	9.2e-13	48.4	0.1	1.1e-12	48.1	0.1	1.1	1	0	0	1	1	1	1	Transposase	IS200	like
YdjM	PF04307.14	gi|410669909|ref|YP_006922280.1|	-	3.6e-06	26.4	3.3	4.4e-06	26.1	3.3	1.1	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
DUF4184	PF13803.6	gi|410669909|ref|YP_006922280.1|	-	0.0031	17.3	1.6	0.0042	16.8	1.0	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4184)
DUF2061	PF09834.9	gi|410669909|ref|YP_006922280.1|	-	0.37	11.3	4.3	0.22	12.0	1.5	2.0	2	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2061)
TrkH	PF02386.16	gi|410669910|ref|YP_006922281.1|	-	1.2e-68	231.8	19.5	6.1e-68	229.5	19.5	1.8	1	1	0	1	1	1	1	Cation	transport	protein
TM140	PF14985.6	gi|410669910|ref|YP_006922281.1|	-	0.12	11.9	4.2	0.059	12.9	0.8	2.4	2	0	0	2	2	2	0	TM140	protein	family
S-layer	PF07752.11	gi|410669911|ref|YP_006922282.1|	-	6.1e-139	461.3	11.4	2e-80	269.5	1.3	2.3	2	0	0	2	2	2	2	S-layer	protein
Lectin_like	PF18560.1	gi|410669911|ref|YP_006922282.1|	-	6.7e-47	159.6	0.6	6.7e-47	159.6	0.6	2.4	2	0	0	2	2	2	1	Lectin	like	domain
Peptidase_C1	PF00112.23	gi|410669911|ref|YP_006922282.1|	-	3e-22	79.8	0.1	5.3e-22	79.0	0.1	1.4	1	0	0	1	1	1	1	Papain	family	cysteine	protease
sCache_3_3	PF17202.4	gi|410669911|ref|YP_006922282.1|	-	0.04	14.3	0.5	0.16	12.4	0.5	2.0	1	0	0	1	1	1	0	Single	cache	domain	3
Band_7	PF01145.25	gi|410669912|ref|YP_006922283.1|	-	1.5e-35	122.8	5.0	2.2e-35	122.3	5.0	1.2	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.6	gi|410669912|ref|YP_006922283.1|	-	0.002	17.8	0.4	0.0058	16.4	0.3	2.0	1	1	1	2	2	2	1	SPFH	domain-Band	7	family
Glyco_hydro_80	PF13647.6	gi|410669912|ref|YP_006922283.1|	-	0.013	15.1	0.1	0.016	14.7	0.1	1.2	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	80	of	chitosanase	A
Hexapep	PF00132.24	gi|410669913|ref|YP_006922284.1|	-	4.3e-28	96.0	19.9	3.5e-08	32.8	1.9	5.3	4	1	1	5	5	5	5	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|410669913|ref|YP_006922284.1|	-	1.7e-17	62.8	21.0	8.7e-05	22.2	0.3	5.1	5	0	0	5	5	5	4	Hexapeptide	repeat	of	succinyl-transferase
MinC_C	PF03775.16	gi|410669913|ref|YP_006922284.1|	-	0.35	10.9	7.8	1.2	9.1	2.0	2.5	2	1	0	2	2	2	0	Septum	formation	inhibitor	MinC,	C-terminal	domain
Bactofilin	PF04519.13	gi|410669913|ref|YP_006922284.1|	-	0.35	11.2	4.6	0.29	11.5	1.6	2.3	2	1	0	2	2	2	0	Polymer-forming	cytoskeletal
DegT_DnrJ_EryC1	PF01041.17	gi|410669914|ref|YP_006922285.1|	-	1.2e-136	455.8	0.1	1.3e-136	455.7	0.1	1.0	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|410669914|ref|YP_006922285.1|	-	7.9e-06	25.4	1.1	5.4e-05	22.6	1.1	2.0	1	1	0	1	1	1	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.20	gi|410669914|ref|YP_006922285.1|	-	0.00014	20.5	0.0	0.00022	19.9	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DAHP_snth_FXD	PF18152.1	gi|410669914|ref|YP_006922285.1|	-	0.023	14.5	0.0	4	7.4	0.0	3.0	2	1	1	3	3	3	0	DAHP	synthase	ferredoxin-like	domain
zf-rbx1	PF12678.7	gi|410669914|ref|YP_006922285.1|	-	0.16	12.3	0.0	0.31	11.4	0.0	1.4	1	0	0	1	1	1	0	RING-H2	zinc	finger	domain
GFO_IDH_MocA	PF01408.22	gi|410669915|ref|YP_006922286.1|	-	4.5e-28	98.5	0.4	7.9e-28	97.7	0.4	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|410669915|ref|YP_006922286.1|	-	0.00063	19.7	0.1	0.0016	18.4	0.1	1.7	1	1	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
CoA_binding	PF02629.19	gi|410669915|ref|YP_006922286.1|	-	0.0032	18.1	0.5	0.0082	16.8	0.5	1.7	1	0	0	1	1	1	1	CoA	binding	domain
DapB_N	PF01113.20	gi|410669915|ref|YP_006922286.1|	-	0.0044	17.1	0.5	0.023	14.8	0.2	2.1	2	0	0	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
F420_oxidored	PF03807.17	gi|410669915|ref|YP_006922286.1|	-	0.026	15.1	0.4	0.065	13.8	0.2	1.8	1	1	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|410669915|ref|YP_006922286.1|	-	0.027	14.7	0.3	0.061	13.5	0.3	1.7	1	1	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|410669915|ref|YP_006922286.1|	-	0.091	12.1	0.3	0.22	10.8	0.1	1.7	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.20	gi|410669915|ref|YP_006922286.1|	-	0.12	12.5	0.6	0.76	9.8	0.1	2.2	1	1	1	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
UDPG_MGDP_dh_N	PF03721.14	gi|410669916|ref|YP_006922287.1|	-	1.8e-34	119.0	0.0	3e-34	118.2	0.0	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|410669916|ref|YP_006922287.1|	-	1.1e-20	73.6	0.1	5.4e-20	71.4	0.0	2.1	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|410669916|ref|YP_006922287.1|	-	1.1e-19	70.8	0.0	3e-19	69.4	0.0	1.8	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
2-Hacid_dh_C	PF02826.19	gi|410669916|ref|YP_006922287.1|	-	0.05	13.0	0.0	6.9	6.0	0.0	2.4	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
VanZ	PF04892.12	gi|410669917|ref|YP_006922288.1|	-	4.5e-14	53.2	3.6	7.1e-14	52.6	3.6	1.3	1	0	0	1	1	1	1	VanZ	like	family
Epimerase	PF01370.21	gi|410669918|ref|YP_006922289.1|	-	1.1e-54	185.5	0.0	1.3e-54	185.2	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|410669918|ref|YP_006922289.1|	-	8.9e-53	179.8	0.0	3.2e-52	178.0	0.0	1.9	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|410669918|ref|YP_006922289.1|	-	2e-17	63.1	0.0	2.5e-17	62.8	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|410669918|ref|YP_006922289.1|	-	2e-13	50.1	0.0	5.1e-13	48.8	0.0	1.6	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|410669918|ref|YP_006922289.1|	-	2e-13	50.1	0.0	8.1e-12	44.8	0.0	2.3	2	0	0	2	2	2	1	Male	sterility	protein
Polysacc_synt_2	PF02719.15	gi|410669918|ref|YP_006922289.1|	-	9.3e-12	44.7	0.0	2.1e-09	37.0	0.0	3.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|410669918|ref|YP_006922289.1|	-	1.8e-06	28.0	0.0	3.1e-06	27.2	0.0	1.4	1	0	0	1	1	1	1	NAD(P)H-binding
TrkA_N	PF02254.18	gi|410669918|ref|YP_006922289.1|	-	0.023	14.9	0.0	0.074	13.3	0.0	1.8	1	1	1	2	2	2	0	TrkA-N	domain
Glycos_transf_4	PF00953.21	gi|410669920|ref|YP_006922291.1|	-	8.2e-26	90.9	17.3	8.2e-26	90.9	17.3	2.1	1	1	1	2	2	2	1	Glycosyl	transferase	family	4
DUF3007	PF11460.8	gi|410669920|ref|YP_006922291.1|	-	2.8	8.2	4.8	0.78	10.0	0.6	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3007)
KH_9	PF17904.1	gi|410669921|ref|YP_006922292.1|	-	0.046	14.1	0.1	0.24	11.8	0.1	1.9	1	1	0	1	1	1	0	FMRP	KH0	domain
DUF2179	PF10035.9	gi|410669922|ref|YP_006922293.1|	-	0.057	13.2	1.9	0.058	13.2	0.3	1.7	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2179)
ParE_toxin	PF05016.15	gi|410669923|ref|YP_006922294.1|	-	1.1e-08	35.6	0.1	1.2e-08	35.5	0.1	1.0	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
YafQ_toxin	PF15738.5	gi|410669923|ref|YP_006922294.1|	-	1.8e-05	25.0	1.3	2.8e-05	24.4	1.3	1.3	1	1	0	1	1	1	1	Bacterial	toxin	of	type	II	toxin-antitoxin	system,	YafQ
ParE-like_toxin	PF15781.5	gi|410669923|ref|YP_006922294.1|	-	0.00039	20.3	0.1	0.0005	20.0	0.1	1.2	1	0	0	1	1	1	1	ParE-like	toxin	of	type	II	bacterial	toxin-antitoxin	system
HigB-like_toxin	PF05015.13	gi|410669923|ref|YP_006922294.1|	-	0.0071	16.7	0.1	0.0083	16.5	0.1	1.2	1	0	0	1	1	1	1	RelE-like	toxin	of	type	II	toxin-antitoxin	system	HigB
Lar_N	PF09861.9	gi|410669923|ref|YP_006922294.1|	-	0.065	12.4	0.0	0.081	12.1	0.0	1.1	1	0	0	1	1	1	0	Lactate	racemase	N-terminal	domain
FMN_red	PF03358.15	gi|410669924|ref|YP_006922295.1|	-	3.8e-15	56.0	0.0	9.7e-15	54.6	0.0	1.6	2	0	0	2	2	2	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|410669924|ref|YP_006922295.1|	-	8.4e-08	32.1	0.0	1.2e-07	31.6	0.0	1.3	1	0	0	1	1	1	1	Flavodoxin-like	fold
Methyltransf_2	PF00891.18	gi|410669924|ref|YP_006922295.1|	-	0.069	12.4	0.0	0.11	11.8	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase	domain
DDE_Tnp_1_2	PF13586.6	gi|410669926|ref|YP_006922297.1|	-	0.029	14.7	0.1	0.035	14.5	0.1	1.2	1	1	0	1	1	1	0	Transposase	DDE	domain
Big_1	PF02369.16	gi|410669927|ref|YP_006922298.1|	-	8.7e-09	35.3	12.5	8.7e-09	35.3	12.5	2.6	2	1	0	2	2	2	1	Bacterial	Ig-like	domain	(group	1)
Invasin_D3	PF09134.10	gi|410669927|ref|YP_006922298.1|	-	0.00013	22.2	10.8	0.00013	22.2	10.8	2.5	2	0	0	2	2	2	1	Invasin,	domain	3
Big_3_5	PF16640.5	gi|410669927|ref|YP_006922298.1|	-	0.0012	19.0	26.5	0.0078	16.4	17.0	3.7	3	1	1	4	4	4	2	Bacterial	Ig-like	domain	(group	3)
CarboxypepD_reg	PF13620.6	gi|410669927|ref|YP_006922298.1|	-	0.0073	16.6	7.5	0.0073	16.6	7.5	2.6	2	0	0	2	2	2	1	Carboxypeptidase	regulatory-like	domain
HYR	PF02494.16	gi|410669927|ref|YP_006922298.1|	-	6.6	7.1	8.0	0.94	9.8	1.3	3.1	3	2	0	3	3	3	0	HYR	domain
ParE_toxin	PF05016.15	gi|410669928|ref|YP_006922299.1|	-	0.00047	20.7	0.4	0.00048	20.7	0.4	1.1	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
ParE-like_toxin	PF15781.5	gi|410669928|ref|YP_006922299.1|	-	0.00062	19.7	2.5	0.0021	18.0	2.5	1.7	1	1	0	1	1	1	1	ParE-like	toxin	of	type	II	bacterial	toxin-antitoxin	system
KGK	PF08872.10	gi|410669928|ref|YP_006922299.1|	-	0.012	16.0	0.3	0.013	16.0	0.3	1.0	1	0	0	1	1	1	0	KGK	domain
YafQ_toxin	PF15738.5	gi|410669928|ref|YP_006922299.1|	-	0.036	14.4	3.5	0.048	14.0	3.5	1.2	1	0	0	1	1	1	0	Bacterial	toxin	of	type	II	toxin-antitoxin	system,	YafQ
DUF1870	PF08965.10	gi|410669928|ref|YP_006922299.1|	-	0.047	13.7	0.3	0.055	13.5	0.3	1.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1870)
Toxin_YhaV	PF11663.8	gi|410669928|ref|YP_006922299.1|	-	0.049	13.7	0.2	0.062	13.3	0.2	1.2	1	0	0	1	1	1	0	Toxin	with	endonuclease	activity,	of	toxin-antitoxin	system
Pyr_redox_3	PF13738.6	gi|410669928|ref|YP_006922299.1|	-	0.069	12.4	0.2	0.072	12.3	0.2	1.1	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
HTH_6	PF01418.17	gi|410669928|ref|YP_006922299.1|	-	0.16	12.0	0.9	0.25	11.4	0.9	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
DUF2683	PF10884.8	gi|410669929|ref|YP_006922300.1|	-	2.2e-20	72.7	0.9	2.4e-20	72.6	0.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2683)
DDE_3	PF13358.6	gi|410669930|ref|YP_006922301.1|	-	6.9e-23	81.0	0.1	1e-22	80.4	0.1	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_1	PF03184.19	gi|410669930|ref|YP_006922301.1|	-	1.7e-07	31.1	0.1	2.1e-07	30.8	0.1	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|410669930|ref|YP_006922301.1|	-	1.1e-05	25.6	0.0	1.8e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	Integrase	core	domain
Ribosomal_S2	PF00318.20	gi|410669930|ref|YP_006922301.1|	-	0.0074	15.5	1.6	1	8.5	0.1	2.1	2	0	0	2	2	2	2	Ribosomal	protein	S2
DDE_Tnp_ISAZ013	PF07592.11	gi|410669930|ref|YP_006922301.1|	-	0.031	13.2	0.1	0.042	12.8	0.1	1.2	1	0	0	1	1	1	0	Rhodopirellula	transposase	DDE	domain
HTH_32	PF13565.6	gi|410669931|ref|YP_006922302.1|	-	9.8e-13	48.5	0.0	1.7e-12	47.8	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|410669931|ref|YP_006922302.1|	-	1e-08	35.1	0.0	2e-08	34.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_33	PF13592.6	gi|410669931|ref|YP_006922302.1|	-	1.9e-08	33.8	0.0	4.7e-08	32.6	0.0	1.8	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|410669931|ref|YP_006922302.1|	-	1.1e-06	28.3	0.1	4.9e-06	26.2	0.0	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|410669931|ref|YP_006922302.1|	-	0.00083	19.4	0.0	0.0019	18.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_ABP1_N	PF18107.1	gi|410669931|ref|YP_006922302.1|	-	0.0033	17.1	0.1	0.0053	16.4	0.1	1.3	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
HTH_Tnp_1_2	PF13022.6	gi|410669931|ref|YP_006922302.1|	-	0.074	13.2	0.2	3	8.0	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	of	insertion	element	transposase
NosD	PF05048.13	gi|410669932|ref|YP_006922303.1|	-	2.7e-24	85.8	81.8	1.9e-16	60.1	26.5	4.4	1	1	2	4	4	4	4	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.6	gi|410669932|ref|YP_006922303.1|	-	5.3e-23	81.6	76.3	7.8e-09	35.6	18.9	4.7	2	1	3	5	5	5	5	Right	handed	beta	helix	region
DUF86	PF01934.17	gi|410669933|ref|YP_006922304.1|	-	3.6e-23	81.7	0.2	4.5e-23	81.4	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
Polbeta	PF18765.1	gi|410669934|ref|YP_006922305.1|	-	0.00077	19.5	0.0	0.00077	19.5	0.0	1.0	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
NTP_transf_2	PF01909.23	gi|410669934|ref|YP_006922305.1|	-	0.0043	17.3	0.1	0.0046	17.2	0.1	1.0	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
PKD	PF00801.20	gi|410669936|ref|YP_006922307.1|	-	1.3e-49	165.9	49.2	4.8e-10	39.1	1.8	6.7	6	0	0	6	6	6	6	PKD	domain
Beta_helix	PF13229.6	gi|410669936|ref|YP_006922307.1|	-	1.7e-13	50.7	33.6	3.3e-08	33.5	10.6	3.2	2	1	1	3	3	3	2	Right	handed	beta	helix	region
SCP2_2	PF13530.6	gi|410669936|ref|YP_006922307.1|	-	9.4e-06	26.0	0.4	30	5.1	0.0	6.3	7	0	0	7	7	7	0	Sterol	carrier	protein	domain
Chondroitinas_B	PF14592.6	gi|410669936|ref|YP_006922307.1|	-	3.6e-05	22.8	0.0	3.6e-05	22.8	0.0	2.9	2	1	0	2	2	2	1	Chondroitinase	B
Y_Y_Y	PF07495.13	gi|410669936|ref|YP_006922307.1|	-	0.0008	19.3	11.9	0.77	9.8	0.1	5.7	6	0	0	6	6	6	2	Y_Y_Y	domain
DUF5011	PF16403.5	gi|410669936|ref|YP_006922307.1|	-	0.36	11.0	41.4	1.6	8.9	1.0	6.9	6	0	0	6	6	6	0	Domain	of	unknown	function	(DUF5011)
Big_9	PF17963.1	gi|410669937|ref|YP_006922308.1|	-	1.2e-10	42.0	10.8	1.7e-09	38.3	3.2	6.2	6	1	1	7	7	7	2	Bacterial	Ig	domain
Dockerin_1	PF00404.18	gi|410669937|ref|YP_006922308.1|	-	2.8e-08	33.8	0.8	1e-07	32.0	0.8	2.0	1	0	0	1	1	1	1	Dockerin	type	I	domain
He_PIG	PF05345.12	gi|410669937|ref|YP_006922308.1|	-	1.9e-07	31.1	4.4	1.9e-07	31.1	4.4	6.6	8	0	0	8	8	8	1	Putative	Ig	domain
Cadherin_5	PF17892.1	gi|410669937|ref|YP_006922308.1|	-	5.8e-06	26.2	1.1	5.8e-06	26.2	1.1	3.6	4	0	0	4	4	4	1	Cadherin-like	domain
Cadherin_4	PF17803.1	gi|410669937|ref|YP_006922308.1|	-	0.0024	18.5	1.7	0.0024	18.5	1.7	5.5	4	1	1	5	5	5	2	Bacterial	cadherin-like	domain
PKD_3	PF16820.5	gi|410669937|ref|YP_006922308.1|	-	0.1	12.3	8.6	0.29	10.9	0.7	4.1	4	0	0	4	4	4	0	PKD-like	domain
PKD	PF00801.20	gi|410669937|ref|YP_006922308.1|	-	3.6	7.5	29.1	0.31	10.9	0.4	6.0	6	0	0	6	6	6	0	PKD	domain
Polysacc_synt	PF01943.17	gi|410669938|ref|YP_006922309.1|	-	1.7e-36	126.0	35.3	1.7e-36	126.0	35.3	2.3	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.6	gi|410669938|ref|YP_006922309.1|	-	4.9e-17	62.1	24.9	4.9e-17	62.1	24.9	2.1	1	1	1	2	2	2	2	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|410669938|ref|YP_006922309.1|	-	1.3e-13	51.2	18.2	1.3e-13	51.2	18.2	4.7	2	1	3	5	5	5	1	Polysaccharide	biosynthesis	C-terminal	domain
MatE	PF01554.18	gi|410669938|ref|YP_006922309.1|	-	1.2e-11	44.5	19.8	1.2e-11	44.5	19.8	3.4	2	1	0	3	3	3	2	MatE
MurJ	PF03023.14	gi|410669938|ref|YP_006922309.1|	-	1.4e-07	30.5	41.3	1.7e-07	30.2	40.6	1.6	1	1	0	1	1	1	1	Lipid	II	flippase	MurJ
TssO	PF17561.2	gi|410669938|ref|YP_006922309.1|	-	6.5	6.9	9.0	20	5.3	0.7	3.1	3	0	0	3	3	3	0	Type	VI	secretion	system,	TssO
Holin_SPP1	PF04688.13	gi|410669938|ref|YP_006922309.1|	-	7.5	6.8	11.8	0.52	10.5	2.9	3.2	3	0	0	3	3	3	0	SPP1	phage	holin
Glycos_transf_1	PF00534.20	gi|410669939|ref|YP_006922310.1|	-	5.8e-43	146.4	0.0	8.8e-43	145.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|410669939|ref|YP_006922310.1|	-	3.6e-33	114.8	0.0	6.2e-33	114.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|410669939|ref|YP_006922310.1|	-	9.7e-18	64.7	0.0	8.4e-17	61.7	0.0	2.2	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|410669939|ref|YP_006922310.1|	-	1.2e-08	35.2	0.0	2.3e-08	34.3	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|410669939|ref|YP_006922310.1|	-	4.4e-07	30.0	0.7	1e-06	28.8	0.5	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	4-like
Glyco_trans_4_4	PF13579.6	gi|410669939|ref|YP_006922310.1|	-	1.3e-05	25.7	0.0	4.4e-05	24.0	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glycogen_syn	PF05693.13	gi|410669939|ref|YP_006922310.1|	-	0.025	13.2	0.0	0.19	10.2	0.0	2.1	2	0	0	2	2	2	0	Glycogen	synthase
EMG1	PF03587.14	gi|410669939|ref|YP_006922310.1|	-	0.056	13.1	0.0	0.094	12.4	0.0	1.3	1	0	0	1	1	1	0	EMG1/NEP1	methyltransferase
TLP-20	PF06088.11	gi|410669939|ref|YP_006922310.1|	-	0.1	12.5	0.2	13	5.7	0.0	2.2	2	0	0	2	2	2	0	Nucleopolyhedrovirus	telokin-like	protein-20	(TLP20)
Glycos_transf_1	PF00534.20	gi|410669940|ref|YP_006922311.1|	-	1.4e-30	106.1	0.1	2.4e-30	105.3	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|410669940|ref|YP_006922311.1|	-	4e-26	92.0	0.0	6.9e-26	91.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|410669940|ref|YP_006922311.1|	-	4.4e-10	39.8	0.0	7.2e-10	39.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Pox_A22	PF04848.13	gi|410669940|ref|YP_006922311.1|	-	0.027	14.6	1.9	2.8	8.1	0.0	2.3	2	0	0	2	2	2	0	Poxvirus	A22	protein
Glycos_transf_1	PF00534.20	gi|410669941|ref|YP_006922312.1|	-	1.8e-20	73.2	0.1	2.6e-19	69.4	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|410669941|ref|YP_006922312.1|	-	1.6e-13	51.3	0.0	4.5e-13	49.8	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|410669941|ref|YP_006922312.1|	-	0.0016	18.5	0.0	0.0028	17.7	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
PMT_2	PF13231.6	gi|410669942|ref|YP_006922313.1|	-	0.0024	18.1	24.3	0.0024	18.1	24.3	3.2	2	1	1	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Glycos_transf_2	PF00535.26	gi|410669943|ref|YP_006922314.1|	-	1.2e-16	61.0	0.0	3.3e-16	59.6	0.0	1.7	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|410669943|ref|YP_006922314.1|	-	1.4e-07	31.6	0.0	4.6e-07	29.9	0.0	1.7	1	1	1	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|410669943|ref|YP_006922314.1|	-	0.0077	16.7	0.0	0.014	15.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
NCE101	PF11654.8	gi|410669943|ref|YP_006922314.1|	-	0.019	14.7	0.0	0.046	13.4	0.0	1.6	1	0	0	1	1	1	0	Non-classical	export	protein	1
DUF354	PF04007.12	gi|410669944|ref|YP_006922315.1|	-	7.5e-18	64.7	0.0	9.5e-18	64.3	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF354)
Glyco_transf_4	PF13439.6	gi|410669944|ref|YP_006922315.1|	-	8.5e-06	25.9	0.0	1.5e-05	25.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|410669944|ref|YP_006922315.1|	-	1.7e-05	25.3	0.0	2.8e-05	24.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|410669944|ref|YP_006922315.1|	-	0.00026	21.0	0.0	0.0004	20.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Lig_C	PF18330.1	gi|410669944|ref|YP_006922315.1|	-	0.11	12.5	1.1	2.7	8.0	0.1	2.5	3	0	0	3	3	3	0	Ligase	Pab1020	C-terminal	region
Hexapep	PF00132.24	gi|410669945|ref|YP_006922316.1|	-	1.1e-15	56.6	11.1	5.2e-11	41.8	2.2	4.2	4	0	0	4	4	4	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|410669945|ref|YP_006922316.1|	-	3.7e-10	39.4	10.0	9.6e-09	34.9	1.5	3.0	3	0	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
RtcB	PF01139.17	gi|410669945|ref|YP_006922316.1|	-	0.53	9.4	2.8	0.73	9.0	2.8	1.1	1	0	0	1	1	1	0	tRNA-splicing	ligase	RtcB
FemAB	PF02388.16	gi|410669946|ref|YP_006922317.1|	-	8.2e-12	44.7	1.5	1.5e-07	30.7	0.1	3.0	2	1	1	3	3	3	3	FemAB	family
Acetyltransf_6	PF13480.7	gi|410669946|ref|YP_006922317.1|	-	4.6e-11	43.1	0.0	8.2e-11	42.2	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Exosortase_EpsH	PF09721.10	gi|410669948|ref|YP_006922319.1|	-	7.9e-30	104.2	28.4	1e-29	103.9	28.4	1.0	1	0	0	1	1	1	1	Transmembrane	exosortase	(Exosortase_EpsH)
Rer1	PF03248.13	gi|410669948|ref|YP_006922319.1|	-	0.78	9.5	13.8	0.22	11.2	0.9	2.4	2	0	0	2	2	2	0	Rer1	family
SPC25	PF06703.11	gi|410669949|ref|YP_006922320.1|	-	0.0028	17.5	4.6	0.0032	17.3	4.6	1.1	1	0	0	1	1	1	1	Microsomal	signal	peptidase	25	kDa	subunit	(SPC25)
Xan_ur_permease	PF00860.20	gi|410669949|ref|YP_006922320.1|	-	0.015	14.0	4.6	0.016	14.0	4.6	1.0	1	0	0	1	1	1	0	Permease	family
Insulin_TMD	PF17870.1	gi|410669949|ref|YP_006922320.1|	-	0.022	14.8	0.2	0.022	14.8	0.2	2.2	1	1	1	2	2	2	0	Insulin	receptor	trans-membrane	segment
Phage_holin_3_6	PF07332.11	gi|410669949|ref|YP_006922320.1|	-	0.059	13.4	5.9	0.069	13.2	5.9	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF4418	PF14387.6	gi|410669949|ref|YP_006922320.1|	-	0.16	12.2	3.4	0.2	11.8	3.4	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4418)
ECF_trnsprt	PF12822.7	gi|410669949|ref|YP_006922320.1|	-	0.34	11.0	11.0	0.37	10.9	11.0	1.0	1	0	0	1	1	1	0	ECF	transporter,	substrate-specific	component
Ion_trans_2	PF07885.16	gi|410669949|ref|YP_006922320.1|	-	0.38	10.7	7.6	0.47	10.5	7.6	1.2	1	0	0	1	1	1	0	Ion	channel
DUF2070	PF09843.9	gi|410669949|ref|YP_006922320.1|	-	0.55	8.4	9.2	0.62	8.3	9.2	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
ETRAMP	PF09716.10	gi|410669949|ref|YP_006922320.1|	-	1.1	9.4	6.5	0.44	10.6	0.3	2.1	1	1	0	2	2	2	0	Malarial	early	transcribed	membrane	protein	(ETRAMP)
DUF4191	PF13829.6	gi|410669949|ref|YP_006922320.1|	-	2.1	7.6	5.8	2.6	7.3	5.8	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
Herpes_LMP1	PF05297.11	gi|410669949|ref|YP_006922320.1|	-	4.5	6.4	8.3	4.6	6.3	8.3	1.0	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
DUF2207	PF09972.9	gi|410669949|ref|YP_006922320.1|	-	7.2	5.2	8.6	8.4	5.0	8.6	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF347	PF03988.12	gi|410669949|ref|YP_006922320.1|	-	9.8	6.5	12.2	1.5	9.1	2.7	2.2	1	1	1	2	2	2	0	Repeat	of	Unknown	Function	(DUF347)
Peptidase_M48	PF01435.18	gi|410669950|ref|YP_006922321.1|	-	1.7e-08	34.5	0.0	2.4e-08	34.0	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M48
OrfB_Zn_ribbon	PF07282.11	gi|410669951|ref|YP_006922322.1|	-	1e-21	76.6	0.1	1.7e-21	75.9	0.1	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|410669951|ref|YP_006922322.1|	-	1.9e-21	76.5	0.0	4.8e-21	75.2	0.0	1.6	2	0	0	2	2	2	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|410669951|ref|YP_006922322.1|	-	7.7e-05	22.1	0.6	0.00022	20.7	0.6	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF807	PF05660.11	gi|410669951|ref|YP_006922322.1|	-	0.0069	16.4	0.0	0.012	15.6	0.0	1.4	1	0	0	1	1	1	1	Coxiella	burnetii	protein	of	unknown	function	(DUF807)
zf-C2HC5	PF06221.13	gi|410669951|ref|YP_006922322.1|	-	0.044	13.8	0.3	0.078	13.0	0.3	1.3	1	0	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
AA_permease_N	PF08403.10	gi|410669951|ref|YP_006922322.1|	-	0.12	11.9	0.0	0.25	10.9	0.0	1.5	1	0	0	1	1	1	0	Amino	acid	permease	N-terminal
DUF1616	PF07760.11	gi|410669952|ref|YP_006922323.1|	-	6e-106	354.1	1.6	1.3e-105	353.0	1.6	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
YfhO	PF09586.10	gi|410669952|ref|YP_006922323.1|	-	0.0098	14.2	0.2	0.015	13.6	0.2	1.2	1	0	0	1	1	1	1	Bacterial	membrane	protein	YfhO
Big_5	PF13205.6	gi|410669952|ref|YP_006922323.1|	-	0.5	11.1	13.0	0.051	14.3	1.0	3.6	2	1	0	2	2	2	0	Bacterial	Ig-like	domain
BNR	PF02012.20	gi|410669952|ref|YP_006922323.1|	-	1.8	8.9	4.4	3	8.2	0.4	3.3	2	0	0	2	2	2	0	BNR/Asp-box	repeat
DUF4134	PF13572.6	gi|410669953|ref|YP_006922324.1|	-	0.22	11.8	1.4	13	6.2	0.1	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4134)
Gram_pos_anchor	PF00746.21	gi|410669953|ref|YP_006922324.1|	-	0.63	10.0	3.2	1.8	8.6	0.0	2.4	2	0	0	2	2	2	0	LPXTG	cell	wall	anchor	motif
VWA_2	PF13519.6	gi|410669954|ref|YP_006922325.1|	-	1.3e-06	29.0	0.0	2.4e-05	24.9	0.0	2.4	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.14	gi|410669954|ref|YP_006922325.1|	-	0.00094	18.6	0.0	0.0017	17.8	0.0	1.3	1	0	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
VWA_3	PF13768.6	gi|410669954|ref|YP_006922325.1|	-	0.05	13.5	0.0	0.1	12.5	0.0	1.5	1	0	0	1	1	1	0	von	Willebrand	factor	type	A	domain
HetR_C	PF18460.1	gi|410669954|ref|YP_006922325.1|	-	0.12	12.3	0.7	0.35	10.8	0.5	1.9	1	1	0	1	1	1	0	Heterocyst	differentiation	regulator	C-terminal	Hood	domain
AAA_lid_8	PF17868.1	gi|410669955|ref|YP_006922326.1|	-	2.9e-23	81.6	0.2	5.1e-23	80.7	0.2	1.4	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|410669955|ref|YP_006922326.1|	-	1.8e-22	79.8	0.0	6.9e-22	77.9	0.0	2.0	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_3	PF07726.11	gi|410669955|ref|YP_006922326.1|	-	0.00011	22.1	0.0	0.00024	20.9	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|410669955|ref|YP_006922326.1|	-	0.00019	21.2	0.0	0.0016	18.1	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.21	gi|410669955|ref|YP_006922326.1|	-	0.0044	16.4	0.0	0.028	13.8	0.0	2.1	2	1	1	3	3	3	1	Magnesium	chelatase,	subunit	ChlI
AAA	PF00004.29	gi|410669955|ref|YP_006922326.1|	-	0.067	13.6	0.0	0.32	11.4	0.0	2.2	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|410669955|ref|YP_006922326.1|	-	0.071	13.5	0.0	0.21	12.0	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_PrkA	PF08298.11	gi|410669955|ref|YP_006922326.1|	-	0.097	11.6	0.0	0.19	10.6	0.0	1.5	1	0	0	1	1	1	0	PrkA	AAA	domain
MAP65_ASE1	PF03999.12	gi|410669955|ref|YP_006922326.1|	-	0.2	10.3	1.0	0.3	9.8	1.0	1.1	1	0	0	1	1	1	0	Microtubule	associated	protein	(MAP65/ASE1	family)
cobW	PF02492.19	gi|410669956|ref|YP_006922327.1|	-	1.4e-07	31.3	0.4	1.6e-07	31.1	0.4	1.0	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
Gram_pos_anchor	PF00746.21	gi|410669957|ref|YP_006922328.1|	-	0.043	13.8	0.6	1	9.4	0.0	2.5	2	0	0	2	2	2	0	LPXTG	cell	wall	anchor	motif
Peptidase_M42	PF05343.14	gi|410669958|ref|YP_006922329.1|	-	1.3e-112	375.6	2.9	1.5e-112	375.4	2.9	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M20	PF01546.28	gi|410669958|ref|YP_006922329.1|	-	1.7e-09	37.7	0.1	2.6e-09	37.1	0.1	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M28	PF04389.17	gi|410669958|ref|YP_006922329.1|	-	3.8e-05	23.5	0.0	0.00056	19.7	0.0	2.2	2	0	0	2	2	2	1	Peptidase	family	M28
HMGL-like	PF00682.19	gi|410669959|ref|YP_006922330.1|	-	3.1e-60	204.0	1.6	3.1e-60	204.0	1.6	1.8	2	0	0	2	2	2	1	HMGL-like
LeuA_dimer	PF08502.10	gi|410669959|ref|YP_006922330.1|	-	2.8e-34	117.9	2.5	5.1e-34	117.0	2.5	1.5	1	0	0	1	1	1	1	LeuA	allosteric	(dimerisation)	domain
TPP_enzyme_N	PF02776.18	gi|410669960|ref|YP_006922331.1|	-	3.5e-58	196.0	0.1	2.5e-57	193.3	0.1	2.3	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|410669960|ref|YP_006922331.1|	-	2.2e-56	189.9	0.1	3.7e-55	185.9	0.1	2.4	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|410669960|ref|YP_006922331.1|	-	8.7e-50	168.0	0.1	1.4e-49	167.3	0.1	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
POR_N	PF01855.19	gi|410669960|ref|YP_006922331.1|	-	0.0063	16.3	0.0	0.021	14.5	0.0	2.0	2	0	0	2	2	2	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
ALS_ss_C	PF10369.9	gi|410669961|ref|YP_006922332.1|	-	7.4e-32	109.4	3.5	1.3e-31	108.6	1.1	2.1	2	0	0	2	2	2	1	Small	subunit	of	acetolactate	synthase
ACT	PF01842.25	gi|410669961|ref|YP_006922332.1|	-	4.8e-19	67.8	1.4	1.6e-18	66.1	0.2	2.1	2	0	0	2	2	2	1	ACT	domain
ACT_5	PF13710.6	gi|410669961|ref|YP_006922332.1|	-	8.3e-18	64.0	1.3	2.1e-17	62.7	0.4	2.1	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.6	gi|410669961|ref|YP_006922332.1|	-	3.3e-07	30.8	0.7	3.3e-07	30.8	0.7	1.8	2	0	0	2	2	2	1	ACT	domain
SLS	PF14611.6	gi|410669961|ref|YP_006922332.1|	-	0.0095	15.8	1.5	0.89	9.3	0.2	2.0	1	1	1	2	2	2	2	Mitochondrial	inner-membrane-bound	regulator
NIL	PF09383.10	gi|410669961|ref|YP_006922332.1|	-	0.01	15.6	0.1	4	7.3	0.0	2.5	2	1	0	2	2	2	0	NIL	domain
Ctf8	PF09696.10	gi|410669961|ref|YP_006922332.1|	-	0.018	15.4	0.2	0.026	14.9	0.2	1.2	1	0	0	1	1	1	0	Ctf8
PriCT_1	PF08708.11	gi|410669961|ref|YP_006922332.1|	-	0.025	14.3	0.0	0.05	13.3	0.0	1.5	1	0	0	1	1	1	0	Primase	C	terminal	1	(PriCT-1)
YbbR	PF07949.12	gi|410669961|ref|YP_006922332.1|	-	0.061	13.7	4.2	0.87	10.0	1.3	2.2	2	0	0	2	2	2	0	YbbR-like	protein
PTS-HPr	PF00381.19	gi|410669961|ref|YP_006922332.1|	-	0.11	12.7	0.5	1.5	9.1	0.0	2.7	2	1	1	3	3	3	0	PTS	HPr	component	phosphorylation	site
IlvN	PF07991.12	gi|410669962|ref|YP_006922333.1|	-	1.9e-77	258.4	1.6	2.9e-77	257.9	1.6	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
IlvC	PF01450.19	gi|410669962|ref|YP_006922333.1|	-	1.1e-59	200.9	0.2	1.6e-59	200.3	0.2	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
NAD_binding_2	PF03446.15	gi|410669962|ref|YP_006922333.1|	-	5.6e-07	29.9	0.0	9.3e-07	29.1	0.0	1.3	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|410669962|ref|YP_006922333.1|	-	9.2e-07	28.4	0.0	1.6e-06	27.6	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|410669962|ref|YP_006922333.1|	-	3.5e-06	27.5	0.1	6.8e-06	26.6	0.1	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
AdoHcyase_NAD	PF00670.21	gi|410669962|ref|YP_006922333.1|	-	0.00013	22.1	0.0	0.00022	21.3	0.0	1.4	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Oxidored_nitro	PF00148.19	gi|410669962|ref|YP_006922333.1|	-	0.0015	17.3	0.1	0.004	16.0	0.0	1.6	2	0	0	2	2	2	1	Nitrogenase	component	1	type	Oxidoreductase
ApbA	PF02558.16	gi|410669962|ref|YP_006922333.1|	-	0.013	15.2	0.1	0.024	14.3	0.1	1.6	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
TrkA_N	PF02254.18	gi|410669962|ref|YP_006922333.1|	-	0.12	12.6	0.1	0.27	11.5	0.1	1.6	1	0	0	1	1	1	0	TrkA-N	domain
NAD_binding_7	PF13241.6	gi|410669962|ref|YP_006922333.1|	-	0.14	12.6	0.1	0.3	11.6	0.1	1.7	1	1	0	1	1	1	0	Putative	NAD(P)-binding
Nitroreductase	PF00881.24	gi|410669964|ref|YP_006922335.1|	-	3.4e-13	50.0	0.2	4.3e-13	49.7	0.2	1.1	1	0	0	1	1	1	1	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|410669964|ref|YP_006922335.1|	-	5.8e-11	42.4	0.1	6.2e-11	42.3	0.1	1.0	1	0	0	1	1	1	1	Putative	TM	nitroreductase
Entericidin	PF08085.11	gi|410669964|ref|YP_006922335.1|	-	0.077	13.1	0.1	0.14	12.3	0.1	1.4	1	0	0	1	1	1	0	Entericidin	EcnA/B	family
Topoisom_bac	PF01131.20	gi|410669965|ref|YP_006922336.1|	-	7.7e-105	351.3	0.0	9.8e-105	350.9	0.0	1.1	1	0	0	1	1	1	1	DNA	topoisomerase
zf-C4_Topoisom	PF01396.19	gi|410669965|ref|YP_006922336.1|	-	4.7e-18	64.7	16.3	2e-12	46.7	2.6	3.7	3	0	0	3	3	3	3	Topoisomerase	DNA	binding	C4	zinc	finger
Toprim	PF01751.22	gi|410669965|ref|YP_006922336.1|	-	1.5e-12	47.6	0.0	4.8e-12	46.0	0.0	1.9	2	0	0	2	2	2	1	Toprim	domain
Tic110	PF16940.5	gi|410669965|ref|YP_006922336.1|	-	0.021	13.4	0.0	4.7	5.6	0.0	2.1	2	0	0	2	2	2	0	Chloroplast	envelope	transporter
T2SSF	PF00482.23	gi|410669965|ref|YP_006922336.1|	-	0.067	13.1	0.0	0.2	11.6	0.0	1.7	2	0	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	F
Toprim_4	PF13662.6	gi|410669965|ref|YP_006922336.1|	-	0.1	13.1	0.0	0.27	11.8	0.0	1.7	1	0	0	1	1	1	0	Toprim	domain
Rubredoxin_2	PF18073.1	gi|410669965|ref|YP_006922336.1|	-	0.26	11.0	8.1	2.3	8.0	0.1	4.2	4	0	0	4	4	4	0	Rubredoxin	metal	binding	domain
zf-RING_7	PF02591.15	gi|410669965|ref|YP_006922336.1|	-	0.28	11.4	0.0	0.28	11.4	0.0	3.2	3	0	0	3	3	3	0	C4-type	zinc	ribbon	domain
RNHCP	PF12647.7	gi|410669965|ref|YP_006922336.1|	-	0.59	10.1	7.4	6.9	6.7	3.5	2.4	2	0	0	2	2	2	0	RNHCP	domain
RNA_POL_M_15KD	PF02150.16	gi|410669965|ref|YP_006922336.1|	-	0.65	9.9	7.8	7.8	6.5	0.4	3.7	3	0	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
Zn_Tnp_IS1595	PF12760.7	gi|410669965|ref|YP_006922336.1|	-	2.3	8.3	11.3	2.5	8.2	3.4	2.7	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|410669966|ref|YP_006922337.1|	-	1.3e-22	79.5	1.0	4.1e-22	77.9	1.0	1.9	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|410669966|ref|YP_006922337.1|	-	6.5e-09	36.0	0.4	1.5e-08	34.9	0.4	1.6	1	0	0	1	1	1	1	Probable	transposase
A2L_zn_ribbon	PF08792.10	gi|410669966|ref|YP_006922337.1|	-	0.0014	18.3	4.0	0.0036	17.0	4.0	1.7	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
Ribosomal_L37ae	PF01780.19	gi|410669966|ref|YP_006922337.1|	-	0.0068	16.5	2.7	0.0083	16.2	0.9	2.1	2	0	0	2	2	2	1	Ribosomal	L37ae	protein	family
C1_2	PF03107.16	gi|410669966|ref|YP_006922337.1|	-	0.49	10.7	2.8	0.34	11.3	0.5	1.9	2	0	0	2	2	2	0	C1	domain
RecR	PF02132.15	gi|410669966|ref|YP_006922337.1|	-	1.6	8.4	4.6	11	5.7	0.5	2.6	1	1	1	2	2	2	0	RecR	protein
ThiC_Rad_SAM	PF01964.18	gi|410669967|ref|YP_006922338.1|	-	6.5e-183	608.2	1.0	7.4e-183	608.1	1.0	1.0	1	0	0	1	1	1	1	Radical	SAM	ThiC	family
L31	PF09784.9	gi|410669967|ref|YP_006922338.1|	-	0.11	12.9	0.0	0.27	11.7	0.0	1.6	1	0	0	1	1	1	0	Mitochondrial	ribosomal	protein	L31
AhpC-TSA	PF00578.21	gi|410669968|ref|YP_006922339.1|	-	6.1e-32	110.1	0.0	1e-31	109.4	0.0	1.4	1	0	0	1	1	1	1	AhpC/TSA	family
1-cysPrx_C	PF10417.9	gi|410669968|ref|YP_006922339.1|	-	4.2e-14	52.1	0.7	9.9e-14	50.9	0.3	1.8	2	0	0	2	2	2	1	C-terminal	domain	of	1-Cys	peroxiredoxin
Redoxin	PF08534.10	gi|410669968|ref|YP_006922339.1|	-	1.7e-12	47.3	0.0	2.8e-12	46.6	0.0	1.3	1	0	0	1	1	1	1	Redoxin
YtxH	PF12732.7	gi|410669968|ref|YP_006922339.1|	-	0.32	11.5	4.8	0.74	10.4	4.8	1.5	1	0	0	1	1	1	0	YtxH-like	protein
OrfB_IS605	PF01385.19	gi|410669969|ref|YP_006922340.1|	-	1.5e-28	99.5	0.3	2.8e-28	98.5	0.3	1.4	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|410669969|ref|YP_006922340.1|	-	2.8e-25	88.0	0.2	7.7e-25	86.6	0.2	1.8	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.8	gi|410669969|ref|YP_006922340.1|	-	3e-17	61.8	2.1	6.4e-17	60.8	2.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Zn_ribbon_SprT	PF17283.2	gi|410669969|ref|YP_006922340.1|	-	0.00017	21.4	0.7	0.00017	21.4	0.7	2.2	2	0	0	2	2	2	1	SprT-like	zinc	ribbon	domain
DZR	PF12773.7	gi|410669969|ref|YP_006922340.1|	-	0.00021	21.3	0.5	0.0006	19.8	0.5	1.8	1	0	0	1	1	1	1	Double	zinc	ribbon
RuvC_1	PF18516.1	gi|410669969|ref|YP_006922340.1|	-	0.0017	17.6	1.2	0.0037	16.5	1.2	1.6	1	0	0	1	1	1	1	RuvC	nuclease	domain
zf-ribbon_3	PF13248.6	gi|410669969|ref|YP_006922340.1|	-	0.0018	17.6	2.3	0.017	14.5	2.3	2.4	1	1	0	1	1	1	1	zinc-ribbon	domain
FbpA	PF05833.11	gi|410669969|ref|YP_006922340.1|	-	0.007	15.2	1.2	0.011	14.5	0.4	1.6	2	0	0	2	2	2	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
TF_Zn_Ribbon	PF08271.12	gi|410669969|ref|YP_006922340.1|	-	0.01	15.3	0.1	6.1	6.5	0.0	2.5	2	0	0	2	2	2	0	TFIIB	zinc-binding
DUF1943	PF09172.11	gi|410669969|ref|YP_006922340.1|	-	0.059	12.6	0.7	0.076	12.2	0.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1943)
zf-NADH-PPase	PF09297.11	gi|410669969|ref|YP_006922340.1|	-	0.24	11.1	3.6	0.51	10.1	1.3	2.5	2	1	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Cript	PF10235.9	gi|410669969|ref|YP_006922340.1|	-	0.28	11.8	5.6	0.59	10.7	0.2	3.0	2	0	0	2	2	2	0	Microtubule-associated	protein	CRIPT
zinc_ribbon_2	PF13240.6	gi|410669969|ref|YP_006922340.1|	-	0.96	9.3	5.5	5	7.0	0.2	2.5	1	1	1	2	2	2	0	zinc-ribbon	domain
Y1_Tnp	PF01797.16	gi|410669970|ref|YP_006922341.1|	-	2.2e-40	137.5	0.3	2.5e-40	137.3	0.3	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
Cupin_2	PF07883.11	gi|410669971|ref|YP_006922342.1|	-	1.4e-10	40.7	0.3	1.3e-09	37.6	0.1	2.4	2	0	0	2	2	2	1	Cupin	domain
dCache_2	PF08269.11	gi|410669971|ref|YP_006922342.1|	-	3.3e-10	39.6	0.1	1.7e-09	37.3	0.0	1.8	1	1	1	2	2	2	1	Cache	domain
sCache_2	PF17200.4	gi|410669971|ref|YP_006922342.1|	-	5.8e-09	36.0	0.1	9.4e-09	35.3	0.1	1.3	1	0	0	1	1	1	1	Single	Cache	domain	2
Cupin_1	PF00190.22	gi|410669971|ref|YP_006922342.1|	-	0.00074	19.1	0.0	0.0015	18.1	0.0	1.5	1	0	0	1	1	1	1	Cupin
MannoseP_isomer	PF01050.18	gi|410669971|ref|YP_006922342.1|	-	0.0083	16.0	0.0	0.021	14.7	0.0	1.6	2	0	0	2	2	2	1	Mannose-6-phosphate	isomerase
Ectoine_synth	PF06339.12	gi|410669971|ref|YP_006922342.1|	-	0.013	15.7	0.0	0.037	14.2	0.0	1.7	2	0	0	2	2	2	0	Ectoine	synthase
CENP-C_C	PF11699.8	gi|410669971|ref|YP_006922342.1|	-	0.019	15.2	0.0	0.039	14.1	0.0	1.5	1	0	0	1	1	1	0	Mif2/CENP-C	like
Cupin_6	PF12852.7	gi|410669971|ref|YP_006922342.1|	-	0.06	13.1	0.0	2.8	7.6	0.0	2.3	2	1	0	2	2	2	0	Cupin
AraC_binding	PF02311.19	gi|410669971|ref|YP_006922342.1|	-	0.061	13.2	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	AraC-like	ligand	binding	domain
DUF2788	PF10981.8	gi|410669972|ref|YP_006922343.1|	-	1.7	8.7	7.0	0.19	11.8	1.5	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2788)
Lactamase_B	PF00753.27	gi|410669976|ref|YP_006922347.1|	-	9.1e-13	48.7	0.5	1.9e-12	47.6	0.5	1.7	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|410669976|ref|YP_006922347.1|	-	2.6e-12	46.7	0.0	3.7e-12	46.2	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|410669976|ref|YP_006922347.1|	-	8.2e-05	22.1	0.0	0.00013	21.5	0.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|410669976|ref|YP_006922347.1|	-	0.0017	18.3	0.0	0.0028	17.6	0.0	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
DUF134	PF02001.16	gi|410669977|ref|YP_006922348.1|	-	1.4e-28	99.3	0.0	1.6e-28	99.1	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF134
Sigma70_r4_2	PF08281.12	gi|410669977|ref|YP_006922348.1|	-	0.00013	21.5	0.1	0.00019	21.0	0.1	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
Sigma70_ECF	PF07638.11	gi|410669977|ref|YP_006922348.1|	-	0.0032	17.4	0.2	0.0039	17.1	0.2	1.1	1	0	0	1	1	1	1	ECF	sigma	factor
Sigma70_r4	PF04545.16	gi|410669977|ref|YP_006922348.1|	-	0.0036	16.8	0.1	0.0056	16.2	0.1	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_10	PF04967.12	gi|410669977|ref|YP_006922348.1|	-	0.005	16.6	0.1	0.014	15.2	0.0	1.8	2	0	0	2	2	2	1	HTH	DNA	binding	domain
HTH_23	PF13384.6	gi|410669977|ref|YP_006922348.1|	-	0.0077	16.0	0.1	0.011	15.5	0.1	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|410669977|ref|YP_006922348.1|	-	0.13	12.3	0.3	0.39	10.8	0.0	1.9	2	0	0	2	2	2	0	Winged	helix-turn	helix
DUF4276	PF14103.6	gi|410669977|ref|YP_006922348.1|	-	0.16	12.1	0.0	0.16	12.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4276)
Nitro_FeMo-Co	PF02579.17	gi|410669978|ref|YP_006922349.1|	-	7.7e-19	67.8	0.0	9.4e-19	67.6	0.0	1.1	1	0	0	1	1	1	1	Dinitrogenase	iron-molybdenum	cofactor
Nitro_FeMo-Co	PF02579.17	gi|410669979|ref|YP_006922350.1|	-	2.2e-17	63.2	0.3	2.9e-17	62.8	0.0	1.4	2	0	0	2	2	2	1	Dinitrogenase	iron-molybdenum	cofactor
CbiA	PF01656.23	gi|410669980|ref|YP_006922351.1|	-	3.3e-18	66.0	0.0	4.4e-18	65.6	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|410669980|ref|YP_006922351.1|	-	1.4e-17	64.0	0.2	8e-08	32.0	0.0	3.0	2	1	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
Fer4	PF00037.27	gi|410669980|ref|YP_006922351.1|	-	3.4e-14	52.0	11.6	1e-06	28.3	1.7	2.8	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|410669980|ref|YP_006922351.1|	-	5.2e-11	42.1	12.7	3.5e-05	23.7	2.1	2.8	2	0	0	2	2	2	2	4Fe-4S	binding	domain
AAA_31	PF13614.6	gi|410669980|ref|YP_006922351.1|	-	1.3e-10	41.5	0.1	7.6e-05	22.7	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
Fer4_7	PF12838.7	gi|410669980|ref|YP_006922351.1|	-	3.4e-08	34.0	9.1	0.0021	18.6	3.1	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410669980|ref|YP_006922351.1|	-	1.3e-07	32.4	7.8	0.00029	21.7	0.2	2.5	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_10	PF13237.6	gi|410669980|ref|YP_006922351.1|	-	2.2e-07	30.9	8.1	0.001	19.2	0.2	2.7	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410669980|ref|YP_006922351.1|	-	1e-06	28.8	11.0	7.5e-06	26.0	11.7	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410669980|ref|YP_006922351.1|	-	2.3e-05	24.4	9.8	2.3e-05	24.4	9.8	2.2	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410669980|ref|YP_006922351.1|	-	3.5e-05	23.6	14.3	0.0019	18.1	2.6	3.2	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|410669980|ref|YP_006922351.1|	-	5.4e-05	23.6	7.3	0.081	13.4	0.3	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
AAA_26	PF13500.6	gi|410669980|ref|YP_006922351.1|	-	0.00022	21.1	0.2	0.008	16.0	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
Fer4_17	PF13534.6	gi|410669980|ref|YP_006922351.1|	-	0.0011	19.4	10.4	0.27	11.8	1.2	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
ArsA_ATPase	PF02374.15	gi|410669980|ref|YP_006922351.1|	-	0.0013	18.0	0.1	0.0022	17.2	0.1	1.4	1	0	0	1	1	1	1	Anion-transporting	ATPase
Fer4_22	PF17179.4	gi|410669980|ref|YP_006922351.1|	-	0.0036	18.1	5.5	1	10.3	0.7	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|410669980|ref|YP_006922351.1|	-	0.017	16.0	24.1	0.068	14.1	6.9	3.1	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|410669980|ref|YP_006922351.1|	-	0.018	15.5	19.1	0.079	13.5	2.0	2.9	3	0	0	3	3	2	0	4Fe-4S	binding	domain
MipZ	PF09140.11	gi|410669980|ref|YP_006922351.1|	-	0.021	14.1	0.0	0.036	13.4	0.0	1.4	2	0	0	2	2	2	0	ATPase	MipZ
Fer4_NifH	PF00142.18	gi|410669980|ref|YP_006922351.1|	-	0.025	14.0	0.0	1.1	8.6	0.0	2.1	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_25	PF13481.6	gi|410669980|ref|YP_006922351.1|	-	0.071	12.7	0.0	0.12	11.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
PhoH	PF02562.16	gi|410669980|ref|YP_006922351.1|	-	0.26	10.7	0.1	0.43	10.0	0.1	1.3	1	0	0	1	1	1	0	PhoH-like	protein
Fer4_15	PF13459.6	gi|410669980|ref|YP_006922351.1|	-	0.37	11.6	8.3	2.1	9.2	1.2	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|410669980|ref|YP_006922351.1|	-	1.7	9.3	13.7	2.1	9.0	3.1	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
CbiA	PF01656.23	gi|410669981|ref|YP_006922352.1|	-	1.4e-17	63.9	0.0	1.8e-17	63.6	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|410669981|ref|YP_006922352.1|	-	1.9e-12	47.1	1.0	1.6e-06	27.7	0.1	2.4	2	1	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
Fer4	PF00037.27	gi|410669981|ref|YP_006922352.1|	-	2.9e-12	45.9	12.7	1.4e-06	27.9	4.5	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
AAA_31	PF13614.6	gi|410669981|ref|YP_006922352.1|	-	4.4e-09	36.5	0.7	0.00041	20.3	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
Fer4_NifH	PF00142.18	gi|410669981|ref|YP_006922352.1|	-	5.2e-08	32.7	0.7	0.00013	21.5	0.1	2.3	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
Fer4_7	PF12838.7	gi|410669981|ref|YP_006922352.1|	-	2.3e-07	31.3	8.4	0.00042	20.8	0.3	2.8	3	0	0	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410669981|ref|YP_006922352.1|	-	3.5e-07	30.0	11.1	0.00022	21.1	2.6	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
RsgA_GTPase	PF03193.16	gi|410669981|ref|YP_006922352.1|	-	3.1e-06	27.2	0.8	0.0066	16.4	0.1	2.5	2	1	0	2	2	2	2	RsgA	GTPase
Fer4_2	PF12797.7	gi|410669981|ref|YP_006922352.1|	-	1.3e-05	25.0	16.6	0.0013	18.7	2.5	2.9	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410669981|ref|YP_006922352.1|	-	1.4e-05	25.1	10.6	1.4e-05	25.1	10.6	2.4	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410669981|ref|YP_006922352.1|	-	1.5e-05	25.8	10.3	0.00055	20.8	0.9	2.9	2	1	1	3	3	2	2	4Fe-4S	double	cluster	binding	domain
AAA_24	PF13479.6	gi|410669981|ref|YP_006922352.1|	-	0.00019	21.2	0.0	0.019	14.7	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
Fer4_17	PF13534.6	gi|410669981|ref|YP_006922352.1|	-	0.0002	21.8	4.9	0.1	13.2	0.1	2.8	3	0	0	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|410669981|ref|YP_006922352.1|	-	0.00042	21.0	5.3	0.0067	17.1	0.2	2.6	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
AAA_22	PF13401.6	gi|410669981|ref|YP_006922352.1|	-	0.00068	19.9	0.0	0.011	16.0	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|410669981|ref|YP_006922352.1|	-	0.00078	19.9	0.0	0.017	15.5	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
Fer4_10	PF13237.6	gi|410669981|ref|YP_006922352.1|	-	0.00084	19.4	21.5	0.0072	16.4	1.5	2.5	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410669981|ref|YP_006922352.1|	-	0.00094	19.3	11.4	0.00094	19.3	11.4	2.5	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410669981|ref|YP_006922352.1|	-	0.0019	18.5	12.5	0.14	12.8	1.4	2.8	2	0	0	2	2	2	2	4Fe-4S	binding	domain
GTP_EFTU	PF00009.27	gi|410669981|ref|YP_006922352.1|	-	0.0026	17.3	1.1	0.026	14.1	0.1	2.1	2	0	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
AAA_30	PF13604.6	gi|410669981|ref|YP_006922352.1|	-	0.0029	17.3	1.1	0.23	11.1	0.1	2.9	2	1	1	3	3	3	1	AAA	domain
PhoH	PF02562.16	gi|410669981|ref|YP_006922352.1|	-	0.0033	16.9	1.0	0.29	10.5	0.8	2.2	2	0	0	2	2	2	1	PhoH-like	protein
ArsA_ATPase	PF02374.15	gi|410669981|ref|YP_006922352.1|	-	0.0036	16.5	2.0	0.01	15.1	0.4	2.0	2	0	0	2	2	2	1	Anion-transporting	ATPase
RuvB_N	PF05496.12	gi|410669981|ref|YP_006922352.1|	-	0.0039	16.9	0.1	0.13	12.0	0.0	2.2	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
IstB_IS21	PF01695.17	gi|410669981|ref|YP_006922352.1|	-	0.0097	15.7	0.1	1.1	8.9	0.1	2.3	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
Fer4_8	PF13183.6	gi|410669981|ref|YP_006922352.1|	-	0.016	15.6	10.5	0.48	10.9	1.3	2.6	1	1	2	3	3	2	0	4Fe-4S	dicluster	domain
ABC_tran	PF00005.27	gi|410669981|ref|YP_006922352.1|	-	0.026	15.0	0.1	0.22	12.0	0.0	2.1	2	0	0	2	2	2	0	ABC	transporter
FTHFS	PF01268.19	gi|410669981|ref|YP_006922352.1|	-	0.032	12.5	0.0	0.057	11.6	0.0	1.3	1	0	0	1	1	1	0	Formate--tetrahydrofolate	ligase
Mg_chelatase	PF01078.21	gi|410669981|ref|YP_006922352.1|	-	0.044	13.1	0.0	1.4	8.3	0.0	2.2	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
NB-ARC	PF00931.22	gi|410669981|ref|YP_006922352.1|	-	0.052	12.7	0.8	1	8.5	0.2	2.2	2	0	0	2	2	2	0	NB-ARC	domain
AAA_25	PF13481.6	gi|410669981|ref|YP_006922352.1|	-	0.093	12.3	0.8	2.1	7.9	1.2	2.2	2	0	0	2	2	2	0	AAA	domain
ATPase	PF06745.13	gi|410669981|ref|YP_006922352.1|	-	0.095	12.0	0.3	0.23	10.8	0.3	1.6	1	0	0	1	1	1	0	KaiC
NACHT	PF05729.12	gi|410669981|ref|YP_006922352.1|	-	0.12	12.3	0.1	0.62	10.0	0.0	2.0	2	0	0	2	2	2	0	NACHT	domain
AAA_29	PF13555.6	gi|410669981|ref|YP_006922352.1|	-	0.12	12.1	0.6	0.4	10.5	0.5	1.9	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|410669981|ref|YP_006922352.1|	-	0.12	12.0	0.0	0.16	11.6	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
CBP_BcsQ	PF06564.12	gi|410669981|ref|YP_006922352.1|	-	0.12	11.8	0.0	4.5	6.7	0.0	2.1	2	0	0	2	2	2	0	Cellulose	biosynthesis	protein	BcsQ
AAA	PF00004.29	gi|410669981|ref|YP_006922352.1|	-	0.14	12.6	0.0	1.9	8.9	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Ras	PF00071.22	gi|410669981|ref|YP_006922352.1|	-	0.15	11.7	0.2	11	5.6	0.0	2.2	2	0	0	2	2	2	0	Ras	family
Fer4_13	PF13370.6	gi|410669981|ref|YP_006922352.1|	-	0.17	12.4	12.1	2.3	8.8	2.5	2.5	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
AAA_13	PF13166.6	gi|410669981|ref|YP_006922352.1|	-	0.19	10.3	0.0	0.27	9.9	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|410669981|ref|YP_006922352.1|	-	0.23	11.7	0.3	0.61	10.3	0.3	1.7	2	0	0	2	2	1	0	AAA	domain
AAA_23	PF13476.6	gi|410669981|ref|YP_006922352.1|	-	0.3	11.5	1.1	0.48	10.9	1.1	1.3	1	0	0	1	1	1	0	AAA	domain
Cation_efflux	PF01545.21	gi|410669982|ref|YP_006922353.1|	-	1.7e-38	132.4	13.6	2.1e-38	132.1	13.6	1.1	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|410669982|ref|YP_006922353.1|	-	4.7e-16	58.7	4.6	7.4e-16	58.1	4.6	1.3	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
DUF2104	PF09877.9	gi|410669982|ref|YP_006922353.1|	-	0.012	15.9	0.4	0.037	14.3	0.4	1.9	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2104)
Urocanase	PF01175.18	gi|410669982|ref|YP_006922353.1|	-	0.08	12.6	0.0	0.14	11.8	0.0	1.2	1	0	0	1	1	1	0	Urocanase	Rossmann-like	domain
DUF3143	PF11341.8	gi|410669982|ref|YP_006922353.1|	-	0.089	13.2	0.0	1.8	9.0	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3143)
MarC	PF01914.17	gi|410669983|ref|YP_006922354.1|	-	2e-57	193.9	16.9	2.2e-57	193.7	16.9	1.0	1	0	0	1	1	1	1	MarC	family	integral	membrane	protein
E1-E2_ATPase	PF00122.20	gi|410669984|ref|YP_006922355.1|	-	4.9e-50	169.6	0.1	4.9e-50	169.6	0.1	3.6	4	0	0	4	4	4	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.21	gi|410669984|ref|YP_006922355.1|	-	9e-48	162.4	1.1	9e-48	162.4	1.1	2.3	3	0	0	3	3	3	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.26	gi|410669984|ref|YP_006922355.1|	-	1.3e-20	74.6	0.0	3.5e-20	73.2	0.0	1.8	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase	PF13246.6	gi|410669984|ref|YP_006922355.1|	-	1.1e-18	67.1	0.0	3e-18	65.7	0.0	1.8	1	0	0	1	1	1	1	Cation	transport	ATPase	(P-type)
Cation_ATPase_N	PF00690.26	gi|410669984|ref|YP_006922355.1|	-	6.4e-15	54.6	0.2	1.6e-14	53.3	0.2	1.8	1	0	0	1	1	1	1	Cation	transporter/ATPase,	N-terminus
Hydrolase_3	PF08282.12	gi|410669984|ref|YP_006922355.1|	-	8.5e-09	35.5	3.2	1.2e-05	25.2	2.4	2.4	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|410669984|ref|YP_006922355.1|	-	0.0062	17.0	0.0	0.012	16.0	0.0	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
PTS-HPr	PF00381.19	gi|410669984|ref|YP_006922355.1|	-	0.1	12.8	0.0	0.35	11.2	0.0	1.9	1	0	0	1	1	1	0	PTS	HPr	component	phosphorylation	site
Bac_rhamnosid_N	PF08531.10	gi|410669984|ref|YP_006922355.1|	-	0.21	11.4	0.0	0.36	10.6	0.0	1.3	1	0	0	1	1	1	0	Alpha-L-rhamnosidase	N-terminal	domain
Glycogen_syn	PF05693.13	gi|410669985|ref|YP_006922356.1|	-	2.9e-16	59.2	0.1	8.7e-09	34.5	0.0	2.8	3	1	0	3	3	3	2	Glycogen	synthase
Glyco_transf_4	PF13439.6	gi|410669985|ref|YP_006922356.1|	-	8.6e-08	32.4	0.1	1.6e-07	31.5	0.1	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glycos_transf_1	PF00534.20	gi|410669985|ref|YP_006922356.1|	-	0.012	15.1	0.0	0.03	13.9	0.0	1.6	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
DUF4921	PF16268.5	gi|410669986|ref|YP_006922357.1|	-	6.5e-18	64.7	0.0	5e-14	52.0	0.0	2.3	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF4921)
GalP_UDP_transf	PF01087.22	gi|410669986|ref|YP_006922357.1|	-	7.5e-10	39.5	0.0	2.7e-09	37.7	0.0	1.7	2	0	0	2	2	2	1	Galactose-1-phosphate	uridyl	transferase,	N-terminal	domain
DUF4931	PF16285.5	gi|410669986|ref|YP_006922357.1|	-	0.00017	21.0	0.5	0.00034	20.0	0.1	1.6	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4931)
HIT	PF01230.23	gi|410669986|ref|YP_006922357.1|	-	0.00066	20.4	0.1	0.31	11.8	0.1	2.3	2	0	0	2	2	2	2	HIT	domain
DUF2024	PF09630.10	gi|410669986|ref|YP_006922357.1|	-	0.0059	16.5	0.6	0.33	10.8	0.1	2.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF2024)
GalP_UDP_tr_C	PF02744.17	gi|410669986|ref|YP_006922357.1|	-	0.0075	16.0	0.0	0.01	15.6	0.0	1.3	1	0	0	1	1	1	1	Galactose-1-phosphate	uridyl	transferase,	C-terminal	domain
DcpS_C	PF11969.8	gi|410669986|ref|YP_006922357.1|	-	0.052	14.0	0.4	0.22	12.0	0.0	2.1	2	0	0	2	2	2	0	Scavenger	mRNA	decapping	enzyme	C-term	binding
Glycos_transf_1	PF00534.20	gi|410669987|ref|YP_006922358.1|	-	1e-30	106.6	0.0	2.3e-30	105.4	0.0	1.7	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|410669987|ref|YP_006922358.1|	-	1.9e-30	106.1	1.0	3e-30	105.4	1.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.6	gi|410669987|ref|YP_006922358.1|	-	1.5e-24	87.0	0.0	3.5e-24	85.8	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|410669987|ref|YP_006922358.1|	-	6.5e-22	78.7	0.0	9.3e-22	78.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_5	PF08323.11	gi|410669987|ref|YP_006922358.1|	-	7.2e-17	61.9	1.2	5.9e-15	55.6	1.2	2.3	1	1	0	1	1	1	1	Starch	synthase	catalytic	domain
Glyco_trans_4_2	PF13477.6	gi|410669987|ref|YP_006922358.1|	-	5.6e-13	49.1	0.1	1.1e-12	48.2	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_trans_1_2	PF13524.6	gi|410669987|ref|YP_006922358.1|	-	0.06	13.8	0.0	0.12	12.8	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
T3SS_LEE_assoc	PF13327.6	gi|410669987|ref|YP_006922358.1|	-	0.065	13.3	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	Type	III	secretion	system	subunit
CorA	PF01544.18	gi|410669988|ref|YP_006922359.1|	-	1.7e-75	254.0	3.9	2e-75	253.8	3.9	1.0	1	0	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
DUF432	PF04254.13	gi|410669989|ref|YP_006922360.1|	-	9e-46	155.1	0.0	1.3e-45	154.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF432)
MS_channel	PF00924.18	gi|410669990|ref|YP_006922361.1|	-	2.9e-52	177.2	8.5	4.5e-52	176.6	8.5	1.3	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
TM_helix	PF05552.12	gi|410669990|ref|YP_006922361.1|	-	0.1	12.6	0.7	0.1	12.6	0.7	2.5	2	0	0	2	2	2	0	Conserved	TM	helix
FtsK_4TM	PF13491.6	gi|410669990|ref|YP_006922361.1|	-	0.36	10.5	4.0	0.6	9.8	4.0	1.3	1	0	0	1	1	1	0	4TM	region	of	DNA	translocase	FtsK/SpoIIIE
FtsX	PF02687.21	gi|410669990|ref|YP_006922361.1|	-	1.2	9.7	12.5	0.24	11.9	3.0	2.3	1	1	1	2	2	2	0	FtsX-like	permease	family
Glyco_hydro_57	PF03065.15	gi|410669991|ref|YP_006922362.1|	-	1.2e-35	123.3	0.0	2.6e-35	122.2	0.0	1.6	2	1	0	2	2	2	1	Glycosyl	hydrolase	family	57
Glyco_hydro_57	PF03065.15	gi|410669992|ref|YP_006922363.1|	-	9.8e-66	222.2	0.0	1.2e-65	221.9	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	57
Polysacc_deac_1	PF01522.21	gi|410669992|ref|YP_006922363.1|	-	0.00057	19.8	0.0	0.0011	18.9	0.0	1.5	1	0	0	1	1	1	1	Polysaccharide	deacetylase
Glyco_hydro_15	PF00723.21	gi|410669993|ref|YP_006922364.1|	-	3.4e-13	49.2	0.0	1.9e-06	26.9	0.0	3.1	2	1	0	2	2	2	2	Glycosyl	hydrolases	family	15
Glucodextran_N	PF09137.11	gi|410669993|ref|YP_006922364.1|	-	4.7e-05	23.1	0.0	7.5e-05	22.4	0.0	1.3	1	0	0	1	1	1	1	Glucodextranase,	domain	N
GDE_C	PF06202.14	gi|410669994|ref|YP_006922365.1|	-	2.5e-129	431.6	0.0	3.4e-129	431.1	0.0	1.1	1	0	0	1	1	1	1	Amylo-alpha-1,6-glucosidase
GDE_N	PF12439.8	gi|410669994|ref|YP_006922365.1|	-	2.4e-76	256.0	0.2	3.2e-76	255.6	0.2	1.2	1	0	0	1	1	1	1	Glycogen	debranching	enzyme	N	terminal
Glyco_hydro_100	PF12899.7	gi|410669994|ref|YP_006922365.1|	-	0.0013	17.5	0.1	0.33	9.6	0.0	2.5	3	0	0	3	3	3	2	Alkaline	and	neutral	invertase
DUF2582	PF10771.9	gi|410669995|ref|YP_006922366.1|	-	1.5e-18	66.7	0.0	1.6e-18	66.6	0.0	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix	domain	(DUF2582)
Phage_integr_3	PF16795.5	gi|410669995|ref|YP_006922366.1|	-	0.14	12.0	0.0	0.14	12.0	0.0	1.1	1	0	0	1	1	1	0	Archaeal	phage	integrase
2-Hacid_dh_C	PF02826.19	gi|410669996|ref|YP_006922367.1|	-	7.3e-65	217.6	0.0	1.2e-64	216.9	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|410669996|ref|YP_006922367.1|	-	3.8e-26	91.3	0.0	4.3e-26	91.2	0.0	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
F420_oxidored	PF03807.17	gi|410669996|ref|YP_006922367.1|	-	0.037	14.6	0.1	0.2	12.3	0.0	2.2	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|410669996|ref|YP_006922367.1|	-	0.039	14.1	0.1	0.087	13.0	0.1	1.6	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|410669996|ref|YP_006922367.1|	-	0.048	14.5	0.0	0.12	13.2	0.0	1.7	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
AdoHcyase_NAD	PF00670.21	gi|410669996|ref|YP_006922367.1|	-	0.15	12.2	0.0	0.29	11.2	0.0	1.4	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
DUF4010	PF13194.6	gi|410669998|ref|YP_006922369.1|	-	7.5e-46	156.4	25.4	7.5e-46	156.4	25.4	2.8	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4010)
MgtC	PF02308.16	gi|410669998|ref|YP_006922369.1|	-	4.6e-22	78.6	11.6	4.6e-22	78.6	11.6	3.7	2	1	1	3	3	3	1	MgtC	family
Bac_luciferase	PF00296.20	gi|410669999|ref|YP_006922370.1|	-	1.4e-12	47.7	0.2	3e-07	30.2	0.1	2.0	1	1	1	2	2	2	2	Luciferase-like	monooxygenase
Peptidase_M50	PF02163.22	gi|410670000|ref|YP_006922371.1|	-	2.6e-13	49.8	9.7	2.5e-08	33.5	1.3	3.1	1	1	1	2	2	2	2	Peptidase	family	M50
Peptidase_M50B	PF13398.6	gi|410670000|ref|YP_006922371.1|	-	1.8e-06	27.7	3.9	1.8e-06	27.7	3.9	2.1	1	1	1	2	2	2	1	Peptidase	M50B-like
DUF872	PF05915.12	gi|410670000|ref|YP_006922371.1|	-	1.3	9.2	7.0	1.8	8.8	1.4	2.4	2	0	0	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF872)
DUF4731	PF15875.5	gi|410670000|ref|YP_006922371.1|	-	4.6	7.5	8.9	0.55	10.5	0.9	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4731)
PRC	PF05239.16	gi|410670001|ref|YP_006922372.1|	-	4.5e-14	52.3	0.1	5.4e-14	52.0	0.1	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
Radical_SAM	PF04055.21	gi|410670002|ref|YP_006922373.1|	-	2e-16	60.8	1.6	2.4e-16	60.6	0.0	1.9	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|410670002|ref|YP_006922373.1|	-	1.3e-06	28.6	2.4	5.7e-06	26.5	0.0	2.3	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|410670002|ref|YP_006922373.1|	-	4.9e-06	26.9	3.0	7.5e-05	23.0	3.0	2.3	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
zf-Di19	PF05605.12	gi|410670002|ref|YP_006922373.1|	-	0.6	10.4	4.8	9.8	6.6	0.0	2.9	3	0	0	3	3	3	0	Drought	induced	19	protein	(Di19),	zinc-binding
Pyrophosphatase	PF00719.19	gi|410670003|ref|YP_006922374.1|	-	3.8e-55	186.1	0.0	4.3e-55	185.9	0.0	1.0	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
S-layer	PF07752.11	gi|410670004|ref|YP_006922375.1|	-	2e-199	659.6	6.9	7.5e-100	333.2	0.7	2.4	2	0	0	2	2	2	2	S-layer	protein
CARDB	PF07705.11	gi|410670004|ref|YP_006922375.1|	-	0.00052	20.2	0.8	0.00052	20.2	0.8	3.3	2	1	1	3	3	3	1	CARDB
CarboxypepD_reg	PF13620.6	gi|410670004|ref|YP_006922375.1|	-	0.00084	19.6	12.8	0.0034	17.6	2.5	4.3	3	1	1	4	4	4	1	Carboxypeptidase	regulatory-like	domain
Big_3_5	PF16640.5	gi|410670004|ref|YP_006922375.1|	-	0.019	15.1	1.1	0.019	15.1	1.1	4.5	5	0	0	5	5	5	0	Bacterial	Ig-like	domain	(group	3)
DUF4198	PF10670.9	gi|410670004|ref|YP_006922375.1|	-	0.029	14.7	0.3	4.9	7.5	0.1	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4198)
PKD	PF00801.20	gi|410670004|ref|YP_006922375.1|	-	0.078	12.8	3.5	3.4	7.6	0.2	4.2	3	0	0	3	3	3	0	PKD	domain
Big_4	PF07532.11	gi|410670004|ref|YP_006922375.1|	-	0.61	9.9	4.8	0.42	10.4	0.1	3.2	3	0	0	3	3	3	0	Bacterial	Ig-like	domain	(group	4)
CBM60	PF16841.5	gi|410670004|ref|YP_006922375.1|	-	2.9	8.4	10.9	20	5.7	0.1	4.8	6	0	0	6	6	6	0	Ca-dependent	carbohydrate-binding	module	xylan-binding
Big_3	PF07523.12	gi|410670004|ref|YP_006922375.1|	-	3	8.2	7.7	8.6	6.8	0.2	4.2	3	0	0	3	3	3	0	Bacterial	Ig-like	domain	(group	3)
EamA	PF00892.20	gi|410670005|ref|YP_006922376.1|	-	1.8e-35	122.1	36.7	6.1e-19	68.5	10.7	2.1	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.16	gi|410670005|ref|YP_006922376.1|	-	0.015	14.7	13.6	0.17	11.2	13.6	2.3	1	1	0	1	1	1	0	Triose-phosphate	Transporter	family
Mg_trans_NIPA	PF05653.14	gi|410670005|ref|YP_006922376.1|	-	0.13	11.3	15.0	0.064	12.4	3.3	2.8	3	0	0	3	3	3	0	Magnesium	transporter	NIPA
DUF2070	PF09843.9	gi|410670005|ref|YP_006922376.1|	-	0.14	10.4	29.2	0.15	10.3	11.1	2.5	1	1	2	3	3	3	0	Predicted	membrane	protein	(DUF2070)
TMEM234	PF10639.9	gi|410670005|ref|YP_006922376.1|	-	0.53	10.3	13.3	2.9	7.9	1.9	2.6	2	1	0	2	2	2	0	Putative	transmembrane	family	234
TCR_zetazeta	PF11628.8	gi|410670005|ref|YP_006922376.1|	-	4.2	7.1	6.8	16	5.3	0.3	4.0	4	0	0	4	4	4	0	T-cell	surface	glycoprotein	CD3	zeta	chain
NYN	PF01936.18	gi|410670006|ref|YP_006922377.1|	-	3e-35	121.9	0.1	3.7e-35	121.6	0.1	1.1	1	0	0	1	1	1	1	NYN	domain
LpxI_N	PF17930.1	gi|410670006|ref|YP_006922377.1|	-	0.0062	16.4	0.0	0.013	15.4	0.0	1.5	1	0	0	1	1	1	1	LpxI	N-terminal	domain
E1-E2_ATPase	PF00122.20	gi|410670007|ref|YP_006922378.1|	-	4e-52	176.4	2.4	4e-52	176.4	2.4	3.4	4	0	0	4	4	4	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.21	gi|410670007|ref|YP_006922378.1|	-	1.1e-38	132.8	10.6	1.1e-38	132.8	10.6	2.5	3	0	0	3	3	3	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.26	gi|410670007|ref|YP_006922378.1|	-	6.5e-22	78.9	0.2	1.7e-21	77.5	0.2	1.8	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase_N	PF00690.26	gi|410670007|ref|YP_006922378.1|	-	3.5e-14	52.2	0.6	1.6e-13	50.2	0.0	2.5	2	1	1	3	3	3	1	Cation	transporter/ATPase,	N-terminus
Cation_ATPase	PF13246.6	gi|410670007|ref|YP_006922378.1|	-	1.2e-09	38.1	0.0	4.3e-09	36.3	0.0	2.0	1	1	0	1	1	1	1	Cation	transport	ATPase	(P-type)
Hydrolase_3	PF08282.12	gi|410670007|ref|YP_006922378.1|	-	9e-06	25.6	1.4	9.8e-05	22.2	0.6	2.3	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|410670007|ref|YP_006922378.1|	-	0.0092	16.4	0.0	0.021	15.2	0.0	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
P-II	PF00543.22	gi|410670008|ref|YP_006922379.1|	-	0.0013	19.3	0.0	0.002	18.7	0.0	1.2	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
DUF1538	PF07556.11	gi|410670009|ref|YP_006922380.1|	-	1.3e-69	233.8	23.0	1.5e-69	233.6	23.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1538)
DUF1538	PF07556.11	gi|410670010|ref|YP_006922381.1|	-	1.5e-69	233.5	28.4	1.8e-69	233.3	28.4	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1538)
Ferric_reduct	PF01794.19	gi|410670011|ref|YP_006922382.1|	-	1.8e-06	28.1	9.2	1.8e-06	28.1	9.2	2.2	2	1	0	2	2	2	1	Ferric	reductase	like	transmembrane	component
Phage_holin_3_3	PF16083.5	gi|410670011|ref|YP_006922382.1|	-	0.047	13.8	0.5	0.047	13.8	0.5	2.2	2	1	0	2	2	2	0	LydA	holin	phage,	holin	superfamily	III
DUF2070	PF09843.9	gi|410670011|ref|YP_006922382.1|	-	0.56	8.4	12.2	0.86	7.8	12.2	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
Glucos_trans_II	PF14264.6	gi|410670011|ref|YP_006922382.1|	-	0.8	9.0	14.4	1.9	7.7	14.4	1.7	1	1	0	1	1	1	0	Glucosyl	transferase	GtrII
DUF4231	PF14015.6	gi|410670011|ref|YP_006922382.1|	-	6.6	7.3	5.8	28	5.2	0.0	2.9	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF4231)
Spore_coat_CotO	PF14153.6	gi|410670013|ref|YP_006922384.1|	-	0.042	13.8	0.0	0.046	13.6	0.0	1.0	1	0	0	1	1	1	0	Spore	coat	protein	CotO
Lon_C	PF05362.13	gi|410670015|ref|YP_006922386.1|	-	3.6e-33	114.9	4.7	6e-33	114.1	4.7	1.4	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
AAA_32	PF13654.6	gi|410670015|ref|YP_006922386.1|	-	1.7e-25	89.8	0.0	4.3e-18	65.4	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.21	gi|410670015|ref|YP_006922386.1|	-	2.6e-17	62.9	0.1	3.2e-10	39.8	0.1	2.3	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|410670015|ref|YP_006922386.1|	-	3.6e-16	59.3	0.1	4e-09	36.4	0.0	2.8	2	0	0	2	2	2	2	Sigma-54	interaction	domain
AAA_5	PF07728.14	gi|410670015|ref|YP_006922386.1|	-	5.1e-11	42.7	0.0	0.00021	21.3	0.0	2.8	3	0	0	3	3	2	2	AAA	domain	(dynein-related	subfamily)
ChlI	PF13541.6	gi|410670015|ref|YP_006922386.1|	-	1.1e-10	41.4	0.6	2.2e-10	40.4	0.6	1.5	1	0	0	1	1	1	1	Subunit	ChlI	of	Mg-chelatase
AAA	PF00004.29	gi|410670015|ref|YP_006922386.1|	-	2.8e-08	34.3	0.0	0.015	15.7	0.0	2.8	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
MCM	PF00493.23	gi|410670015|ref|YP_006922386.1|	-	8.3e-07	28.3	1.0	0.045	12.8	0.0	3.1	3	0	0	3	3	3	2	MCM	P-loop	domain
Sigma54_activ_2	PF14532.6	gi|410670015|ref|YP_006922386.1|	-	2.4e-05	24.5	0.0	0.098	12.8	0.0	2.6	2	0	0	2	2	2	2	Sigma-54	interaction	domain
RuvB_N	PF05496.12	gi|410670015|ref|YP_006922386.1|	-	2.6e-05	24.0	0.1	0.028	14.1	0.0	2.5	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|410670015|ref|YP_006922386.1|	-	5e-05	23.6	0.0	0.0017	18.6	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.6	gi|410670015|ref|YP_006922386.1|	-	5e-05	23.7	0.4	0.0012	19.2	0.4	2.9	1	1	0	1	1	1	1	AAA	domain
AAA_3	PF07726.11	gi|410670015|ref|YP_006922386.1|	-	0.0001	22.2	0.3	0.36	10.7	0.0	3.0	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_7	PF12775.7	gi|410670015|ref|YP_006922386.1|	-	0.00012	21.6	0.0	0.00077	19.0	0.0	2.1	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
TIP49	PF06068.13	gi|410670015|ref|YP_006922386.1|	-	0.00024	20.4	0.0	0.67	9.1	0.0	2.4	2	0	0	2	2	2	2	TIP49	P-loop	domain
L_lac_phage_MSP	PF06488.11	gi|410670015|ref|YP_006922386.1|	-	0.00069	19.0	0.6	0.0011	18.3	0.6	1.2	1	0	0	1	1	1	1	Phage	tail	tube	protein
AAA_30	PF13604.6	gi|410670015|ref|YP_006922386.1|	-	0.00085	19.1	0.0	0.016	14.9	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
PhoH	PF02562.16	gi|410670015|ref|YP_006922386.1|	-	0.0027	17.2	0.0	0.0064	16.0	0.0	1.6	1	0	0	1	1	1	1	PhoH-like	protein
AAA_16	PF13191.6	gi|410670015|ref|YP_006922386.1|	-	0.0054	17.1	0.0	0.11	12.9	0.0	2.5	2	0	0	2	2	2	1	AAA	ATPase	domain
Birna_VP4	PF01768.16	gi|410670015|ref|YP_006922386.1|	-	0.0072	16.2	1.1	0.045	13.6	1.3	2.2	1	1	1	2	2	2	1	Birnavirus	VP4	protein
VirB3	PF05101.13	gi|410670015|ref|YP_006922386.1|	-	0.013	15.7	1.4	0.025	14.8	1.4	1.4	1	0	0	1	1	1	0	Type	IV	secretory	pathway,	VirB3-like	protein
Parvo_NS1	PF01057.17	gi|410670015|ref|YP_006922386.1|	-	0.014	14.5	0.0	0.024	13.7	0.0	1.3	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
AAA_33	PF13671.6	gi|410670015|ref|YP_006922386.1|	-	0.02	15.1	0.0	0.044	14.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_PrkA	PF08298.11	gi|410670015|ref|YP_006922386.1|	-	0.03	13.3	1.7	0.8	8.5	0.0	2.6	3	0	0	3	3	3	0	PrkA	AAA	domain
IstB_IS21	PF01695.17	gi|410670015|ref|YP_006922386.1|	-	0.035	13.8	0.0	0.1	12.3	0.0	1.7	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
ABC_tran	PF00005.27	gi|410670015|ref|YP_006922386.1|	-	0.046	14.2	0.0	0.12	12.8	0.0	1.7	1	0	0	1	1	1	0	ABC	transporter
DUF815	PF05673.13	gi|410670015|ref|YP_006922386.1|	-	0.049	12.8	0.0	0.1	11.8	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA_2	PF07724.14	gi|410670015|ref|YP_006922386.1|	-	0.07	13.2	0.2	16	5.5	0.1	2.7	2	1	0	2	2	2	0	AAA	domain	(Cdc48	subfamily)
DUF4118	PF13493.6	gi|410670015|ref|YP_006922386.1|	-	0.081	12.7	1.4	0.21	11.4	0.8	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4118)
NB-ARC	PF00931.22	gi|410670015|ref|YP_006922386.1|	-	0.14	11.3	0.0	15	4.7	0.0	2.4	2	0	0	2	2	2	0	NB-ARC	domain
DUF2075	PF09848.9	gi|410670015|ref|YP_006922386.1|	-	0.14	11.3	0.0	0.26	10.5	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
RNA_helicase	PF00910.22	gi|410670015|ref|YP_006922386.1|	-	0.15	12.4	0.0	0.53	10.7	0.0	2.0	2	0	0	2	2	1	0	RNA	helicase
PmbA_TldD	PF01523.16	gi|410670016|ref|YP_006922387.1|	-	4.2e-65	220.4	1.8	4.6e-65	220.2	1.2	1.4	2	0	0	2	2	2	1	Putative	modulator	of	DNA	gyrase
PmbA_TldD	PF01523.16	gi|410670017|ref|YP_006922388.1|	-	1.7e-55	188.8	0.5	2.2e-55	188.5	0.5	1.1	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
CHASE4	PF05228.13	gi|410670018|ref|YP_006922389.1|	-	1.1e-30	106.6	0.3	2e-30	105.8	0.3	1.4	1	0	0	1	1	1	1	CHASE4	domain
HisKA_2	PF07568.12	gi|410670018|ref|YP_006922389.1|	-	1.2e-29	102.1	4.9	1.2e-29	102.1	4.9	2.1	2	0	0	2	2	2	1	Histidine	kinase
HATPase_c	PF02518.26	gi|410670018|ref|YP_006922389.1|	-	6.1e-10	39.6	0.1	1.6e-09	38.2	0.1	1.8	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HWE_HK	PF07536.14	gi|410670018|ref|YP_006922389.1|	-	3.3e-06	27.7	2.5	3.3e-06	27.7	0.4	2.1	2	0	0	2	2	2	1	HWE	histidine	kinase
HATPase_c_2	PF13581.6	gi|410670018|ref|YP_006922389.1|	-	7.4e-05	22.7	0.0	0.00015	21.7	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HAMP	PF00672.25	gi|410670018|ref|YP_006922389.1|	-	0.00028	21.2	0.1	0.0037	17.6	0.1	2.3	2	0	0	2	2	2	1	HAMP	domain
SPOB_a	PF14689.6	gi|410670018|ref|YP_006922389.1|	-	0.04	13.6	0.4	0.16	11.7	0.4	2.1	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
Response_reg	PF00072.24	gi|410670019|ref|YP_006922390.1|	-	1.5e-21	76.6	0.1	2.5e-21	76.0	0.1	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_4	PF08448.10	gi|410670019|ref|YP_006922390.1|	-	6.8e-08	32.7	0.0	1.1e-07	32.1	0.0	1.3	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|410670019|ref|YP_006922390.1|	-	2e-07	31.2	0.1	3.1e-07	30.6	0.1	1.3	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|410670019|ref|YP_006922390.1|	-	2.1e-06	27.7	0.0	4.3e-06	26.7	0.0	1.5	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|410670019|ref|YP_006922390.1|	-	0.00077	19.4	0.0	0.0018	18.3	0.0	1.5	1	0	0	1	1	1	1	PAS	domain
PAS_7	PF12860.7	gi|410670019|ref|YP_006922390.1|	-	0.026	14.7	0.0	0.05	13.8	0.0	1.5	1	1	0	1	1	1	0	PAS	fold
Gar1	PF04410.14	gi|410670019|ref|YP_006922390.1|	-	0.033	14.0	0.2	0.07	12.9	0.2	1.5	1	0	0	1	1	1	0	Gar1/Naf1	RNA	binding	region
MFS_1	PF07690.16	gi|410670020|ref|YP_006922391.1|	-	2.6e-62	210.8	41.4	4.4e-36	124.5	19.1	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|410670020|ref|YP_006922391.1|	-	2.5e-20	72.7	23.0	1.3e-11	44.0	11.2	3.1	1	1	2	3	3	3	3	MFS_1	like	family
Sugar_tr	PF00083.24	gi|410670020|ref|YP_006922391.1|	-	2.5e-12	46.4	39.6	2.4e-11	43.2	9.2	3.1	2	1	1	3	3	3	2	Sugar	(and	other)	transporter
MFS_3	PF05977.13	gi|410670020|ref|YP_006922391.1|	-	9e-07	27.7	17.0	1.8e-05	23.4	1.4	2.3	2	0	0	2	2	2	2	Transmembrane	secretion	effector
PAP2_3	PF14378.6	gi|410670021|ref|YP_006922392.1|	-	3.4e-09	36.7	19.5	3.4e-09	36.7	19.5	3.0	2	1	1	3	3	3	1	PAP2	superfamily
PAP2	PF01569.21	gi|410670021|ref|YP_006922392.1|	-	1.9e-08	34.1	9.2	1.9e-08	34.1	9.2	2.6	2	1	1	3	3	3	1	PAP2	superfamily
Copper-bind	PF00127.20	gi|410670022|ref|YP_006922393.1|	-	5.2e-06	26.8	0.0	0.0024	18.3	0.0	2.1	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|410670022|ref|YP_006922393.1|	-	0.00057	20.0	0.0	0.00071	19.7	0.0	1.1	1	0	0	1	1	1	1	Cupredoxin-like	domain
DNA_ligase_A_M	PF01068.21	gi|410670023|ref|YP_006922394.1|	-	4.3e-57	193.1	0.0	7.7e-57	192.2	0.0	1.4	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
DNA_ligase_A_N	PF04675.14	gi|410670023|ref|YP_006922394.1|	-	7e-32	111.1	0.0	1.4e-31	110.2	0.0	1.5	1	0	0	1	1	1	1	DNA	ligase	N	terminus
DNA_ligase_A_C	PF04679.15	gi|410670023|ref|YP_006922394.1|	-	3.8e-18	65.9	0.0	1.1e-17	64.4	0.0	1.8	2	0	0	2	2	2	1	ATP	dependent	DNA	ligase	C	terminal	region
Homoserine_dh	PF00742.19	gi|410670024|ref|YP_006922395.1|	-	2.3e-56	190.4	0.2	4.2e-56	189.6	0.2	1.4	1	0	0	1	1	1	1	Homoserine	dehydrogenase
NAD_binding_3	PF03447.16	gi|410670024|ref|YP_006922395.1|	-	4.6e-08	33.7	0.0	1.3e-07	32.2	0.0	1.8	1	1	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
ELFV_dehydrog	PF00208.21	gi|410670024|ref|YP_006922395.1|	-	0.00019	21.2	1.3	0.00035	20.4	0.7	1.8	2	1	0	2	2	2	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|410670024|ref|YP_006922395.1|	-	0.031	14.5	0.4	0.13	12.6	0.1	2.1	2	0	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
Sigma70_r1_1	PF03979.14	gi|410670025|ref|YP_006922396.1|	-	0.00062	19.8	0.4	0.0024	17.9	0.1	2.0	2	1	0	2	2	2	1	Sigma-70	factor,	region	1.1
Saccharop_dh_N	PF04455.12	gi|410670025|ref|YP_006922396.1|	-	0.006	17.0	0.7	0.044	14.2	0.2	2.0	1	1	1	2	2	2	1	LOR/SDH	bifunctional	enzyme	conserved	region
CheB_methylest	PF01339.17	gi|410670025|ref|YP_006922396.1|	-	0.038	13.7	0.1	0.049	13.4	0.1	1.3	1	0	0	1	1	1	0	CheB	methylesterase
TK	PF00265.18	gi|410670025|ref|YP_006922396.1|	-	0.15	11.9	0.0	0.21	11.4	0.0	1.4	1	0	0	1	1	1	0	Thymidine	kinase
HTH_24	PF13412.6	gi|410670026|ref|YP_006922397.1|	-	0.0012	18.4	0.0	0.0028	17.2	0.0	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|410670026|ref|YP_006922397.1|	-	0.0034	17.2	0.0	0.014	15.2	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.6	gi|410670026|ref|YP_006922397.1|	-	0.0044	17.5	0.0	0.041	14.4	0.0	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
CarboxypepD_reg	PF13620.6	gi|410670026|ref|YP_006922397.1|	-	0.025	14.8	0.1	0.048	13.9	0.1	1.5	1	0	0	1	1	1	0	Carboxypeptidase	regulatory-like	domain
MarR	PF01047.22	gi|410670026|ref|YP_006922397.1|	-	0.031	14.2	0.0	0.059	13.3	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_Crp_2	PF13545.6	gi|410670026|ref|YP_006922397.1|	-	0.061	13.3	0.0	0.14	12.2	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|410670026|ref|YP_006922397.1|	-	0.07	13.3	0.0	0.16	12.2	0.0	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Chordopox_A20R	PF05941.13	gi|410670026|ref|YP_006922397.1|	-	0.12	11.4	0.2	0.22	10.4	0.2	1.4	1	0	0	1	1	1	0	Chordopoxvirus	A20R	protein
TrmB	PF01978.19	gi|410670026|ref|YP_006922397.1|	-	0.14	12.1	0.0	0.25	11.3	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
T2SSN	PF01203.19	gi|410670027|ref|YP_006922398.1|	-	0.0022	18.2	0.4	0.049	13.8	0.1	2.5	2	1	0	2	2	2	1	Type	II	secretion	system	(T2SS),	protein	N
DUF4245	PF14030.6	gi|410670027|ref|YP_006922398.1|	-	0.012	15.6	0.1	4.9	7.1	0.0	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF4245)
FlgD_ig	PF13860.6	gi|410670027|ref|YP_006922398.1|	-	0.078	12.8	2.4	1.8	8.5	0.3	3.1	2	0	0	2	2	2	0	FlgD	Ig-like	domain
DUF1120	PF06551.12	gi|410670027|ref|YP_006922398.1|	-	1.3	9.2	6.0	2	8.6	0.2	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1120)
NOA36	PF06524.12	gi|410670027|ref|YP_006922398.1|	-	1.7	7.9	8.8	4.2	6.6	8.8	1.6	1	0	0	1	1	1	0	NOA36	protein
Peptidase_M48	PF01435.18	gi|410670029|ref|YP_006922400.1|	-	2.9e-33	115.3	1.0	5e-33	114.5	0.1	1.7	1	1	1	2	2	2	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|410670029|ref|YP_006922400.1|	-	0.00019	20.7	0.1	0.00034	19.9	0.0	1.6	2	0	0	2	2	2	1	BlaR1	peptidase	M56
Yip1	PF04893.17	gi|410670029|ref|YP_006922400.1|	-	0.005	16.6	3.2	0.005	16.6	3.2	2.2	2	0	0	2	2	2	1	Yip1	domain
DUF4157	PF13699.6	gi|410670029|ref|YP_006922400.1|	-	0.043	14.0	0.3	0.12	12.7	0.3	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4157)
DUF488	PF04343.13	gi|410670030|ref|YP_006922401.1|	-	2.9e-16	60.1	0.0	1.7e-15	57.7	0.0	1.9	1	1	0	1	1	1	1	Protein	of	unknown	function,	DUF488
Rhodanese	PF00581.20	gi|410670030|ref|YP_006922401.1|	-	0.13	12.8	0.0	0.18	12.3	0.0	1.3	1	0	0	1	1	1	0	Rhodanese-like	domain
PAS_9	PF13426.7	gi|410670031|ref|YP_006922402.1|	-	7.5e-33	112.9	1.3	3.1e-11	43.4	0.1	4.9	4	0	0	4	4	4	4	PAS	domain
HATPase_c	PF02518.26	gi|410670031|ref|YP_006922402.1|	-	1.9e-32	112.1	0.1	7.3e-32	110.2	0.1	2.1	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|410670031|ref|YP_006922402.1|	-	1.2e-28	99.3	0.0	7.7e-11	42.1	0.0	4.6	4	0	0	4	4	4	4	PAS	fold
PAS	PF00989.25	gi|410670031|ref|YP_006922402.1|	-	2e-23	82.5	0.0	8e-09	35.5	0.0	4.1	4	1	0	4	4	4	3	PAS	fold
HisKA	PF00512.25	gi|410670031|ref|YP_006922402.1|	-	1.7e-19	69.6	0.0	2.3e-18	66.0	0.0	2.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|410670031|ref|YP_006922402.1|	-	1.2e-17	64.1	0.0	5.9e-06	26.5	0.0	5.1	5	1	0	5	5	5	2	PAS	fold
GAF	PF01590.26	gi|410670031|ref|YP_006922402.1|	-	1.9e-13	51.2	0.1	8e-07	29.8	0.0	2.7	2	0	0	2	2	2	2	GAF	domain
GAF_2	PF13185.6	gi|410670031|ref|YP_006922402.1|	-	1.2e-12	48.3	0.0	4.9e-05	23.6	0.0	2.4	2	0	0	2	2	2	2	GAF	domain
PAS_8	PF13188.7	gi|410670031|ref|YP_006922402.1|	-	6.4e-11	42.0	0.2	9.1e-07	28.8	0.0	3.7	3	0	0	3	3	3	2	PAS	domain
GAF_3	PF13492.6	gi|410670031|ref|YP_006922402.1|	-	8.6e-05	22.9	0.0	0.18	12.1	0.0	2.7	2	1	0	2	2	2	2	GAF	domain
PAS_7	PF12860.7	gi|410670031|ref|YP_006922402.1|	-	0.00051	20.2	0.2	40	4.4	0.0	5.0	4	1	0	4	4	4	0	PAS	fold
HATPase_c_3	PF13589.6	gi|410670031|ref|YP_006922402.1|	-	0.0024	17.7	0.0	0.0064	16.3	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.6	gi|410670031|ref|YP_006922402.1|	-	0.012	15.5	0.0	0.039	13.8	0.0	2.0	1	0	0	1	1	1	0	GHKL	domain
Holin_BhlA	PF10960.8	gi|410670031|ref|YP_006922402.1|	-	0.034	14.1	3.9	1.6	8.7	0.0	3.2	3	0	0	3	3	3	0	BhlA	holin	family
EPSP_synthase	PF00275.20	gi|410670032|ref|YP_006922403.1|	-	3.4e-114	381.8	0.7	3.9e-114	381.6	0.7	1.0	1	0	0	1	1	1	1	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
Hydantoinase_A	PF01968.18	gi|410670033|ref|YP_006922404.1|	-	9.3e-33	113.7	1.4	1.1e-31	110.1	0.1	2.9	2	1	0	2	2	2	1	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.13	gi|410670033|ref|YP_006922404.1|	-	7.8e-32	110.4	4.8	4.9e-28	98.0	1.0	3.5	2	1	0	2	2	2	2	Hydantoinase/oxoprolinase	N-terminal	region
MutL	PF13941.6	gi|410670033|ref|YP_006922404.1|	-	0.00018	20.3	1.4	0.14	10.7	0.1	2.2	2	0	0	2	2	2	2	MutL	protein
BcrAD_BadFG	PF01869.20	gi|410670033|ref|YP_006922404.1|	-	0.00049	19.7	1.1	0.27	10.7	0.1	3.3	3	1	0	4	4	4	2	BadF/BadG/BcrA/BcrD	ATPase	family
ROK	PF00480.20	gi|410670033|ref|YP_006922404.1|	-	0.051	13.0	0.1	0.16	11.4	0.0	1.8	2	0	0	2	2	2	0	ROK	family
FtsA	PF14450.6	gi|410670033|ref|YP_006922404.1|	-	0.26	11.7	1.9	5.6	7.4	0.1	2.7	2	0	0	2	2	2	0	Cell	division	protein	FtsA
MCR_alpha_N	PF02745.15	gi|410670034|ref|YP_006922405.1|	-	1.9e-144	480.0	1.3	2.5e-144	479.6	1.3	1.1	1	0	0	1	1	1	1	Methyl-coenzyme	M	reductase	alpha	subunit,	N-terminal	domain
MCR_alpha	PF02249.17	gi|410670034|ref|YP_006922405.1|	-	1.4e-65	219.5	4.9	1.4e-65	219.5	4.9	2.0	2	0	0	2	2	2	1	Methyl-coenzyme	M	reductase	alpha	subunit,	C-terminal	domain
MCR_beta_N	PF02783.15	gi|410670034|ref|YP_006922405.1|	-	0.11	12.1	0.0	0.29	10.7	0.0	1.7	2	0	0	2	2	2	0	Methyl-coenzyme	M	reductase	beta	subunit,	N-terminal	domain
MCR_gamma	PF02240.16	gi|410670035|ref|YP_006922406.1|	-	3.3e-116	386.8	0.2	3.7e-116	386.6	0.2	1.0	1	0	0	1	1	1	1	Methyl-coenzyme	M	reductase	gamma	subunit
Sortase	PF04203.13	gi|410670035|ref|YP_006922406.1|	-	0.1	12.4	0.0	0.26	11.1	0.0	1.7	2	0	0	2	2	2	0	Sortase	domain
MCR_C	PF04609.12	gi|410670036|ref|YP_006922407.1|	-	5.7e-07	28.9	0.8	8.2e-07	28.4	0.8	1.3	1	1	0	1	1	1	1	Methyl-coenzyme	M	reductase	operon	protein	C
MCR_D	PF02505.14	gi|410670037|ref|YP_006922408.1|	-	8.2e-57	191.1	0.0	9.4e-57	190.9	0.0	1.0	1	0	0	1	1	1	1	Methyl-coenzyme	M	reductase	operon	protein	D
MCR_beta	PF02241.18	gi|410670038|ref|YP_006922409.1|	-	2.8e-135	449.7	6.3	4.8e-135	448.9	6.3	1.4	1	0	0	1	1	1	1	Methyl-coenzyme	M	reductase	beta	subunit,	C-terminal	domain
MCR_beta_N	PF02783.15	gi|410670038|ref|YP_006922409.1|	-	1e-81	272.9	4.4	1e-81	272.9	4.4	1.6	2	0	0	2	2	2	1	Methyl-coenzyme	M	reductase	beta	subunit,	N-terminal	domain
DUF1338	PF07063.13	gi|410670038|ref|YP_006922409.1|	-	0.062	12.5	0.0	0.09	12.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1338)
Radical_SAM	PF04055.21	gi|410670040|ref|YP_006922411.1|	-	8.2e-12	45.8	7.9	1.2e-09	38.8	6.5	3.5	2	1	0	2	2	2	1	Radical	SAM	superfamily
PaRep2b	PF07775.11	gi|410670040|ref|YP_006922411.1|	-	0.03	12.8	0.0	0.042	12.3	0.0	1.1	1	0	0	1	1	1	0	PaRep2b	protein
PolC_DP2	PF03833.13	gi|410670041|ref|YP_006922412.1|	-	0	1324.6	0.0	0	1323.5	0.0	1.5	2	0	0	2	2	2	1	DNA	polymerase	II	large	subunit	DP2
DUF2072	PF09845.9	gi|410670041|ref|YP_006922412.1|	-	0.18	12.1	0.1	0.18	12.1	0.1	3.2	3	0	0	3	3	3	0	Zn-ribbon	containing	protein
Zn-ribbon_8	PF09723.10	gi|410670041|ref|YP_006922412.1|	-	0.62	10.2	24.9	1.2	9.3	1.3	4.3	2	1	1	3	3	3	0	Zinc	ribbon	domain
DZR	PF12773.7	gi|410670041|ref|YP_006922412.1|	-	1.4	9.0	21.0	3.8	7.6	0.7	3.3	2	1	0	2	2	2	0	Double	zinc	ribbon
HTH_45	PF14947.6	gi|410670042|ref|YP_006922413.1|	-	1.5e-15	56.9	0.5	1.6e-15	56.8	0.5	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
HemN_C	PF06969.16	gi|410670042|ref|YP_006922413.1|	-	0.014	15.4	0.0	0.017	15.2	0.0	1.2	1	0	0	1	1	1	0	HemN	C-terminal	domain
Spore_Cse60	PF10957.8	gi|410670042|ref|YP_006922413.1|	-	0.037	14.1	0.1	0.051	13.6	0.1	1.4	1	1	0	1	1	1	0	Sporulation	protein	Cse60
Fumerase	PF05681.14	gi|410670043|ref|YP_006922414.1|	-	5e-96	321.3	0.0	5.6e-96	321.1	0.0	1.0	1	0	0	1	1	1	1	Fumarate	hydratase	(Fumerase)
Fumerase_C	PF05683.12	gi|410670044|ref|YP_006922415.1|	-	3.7e-47	160.3	0.0	4.1e-47	160.2	0.0	1.0	1	0	0	1	1	1	1	Fumarase	C-terminus
T2SSF	PF00482.23	gi|410670045|ref|YP_006922416.1|	-	5e-19	68.5	1.2	5e-19	68.5	1.2	1.8	2	0	0	2	2	2	1	Type	II	secretion	system	(T2SS),	protein	F
DUF4448	PF14610.6	gi|410670045|ref|YP_006922416.1|	-	0.077	12.8	0.0	0.9	9.3	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4448)
Fer4_24	PF18109.1	gi|410670045|ref|YP_006922416.1|	-	0.12	12.7	0.0	0.3	11.4	0.0	1.7	1	0	0	1	1	1	0	Ferredoxin	I	4Fe-4S	cluster	domain
Rac1	PF09632.10	gi|410670045|ref|YP_006922416.1|	-	0.12	11.5	0.0	0.19	10.9	0.0	1.3	1	0	0	1	1	1	0	Rac1-binding	domain
DUF2753	PF10952.8	gi|410670045|ref|YP_006922416.1|	-	0.19	11.9	0.0	0.37	10.9	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2753)
T2SSF	PF00482.23	gi|410670046|ref|YP_006922417.1|	-	4.6e-18	65.4	0.2	4.6e-18	65.4	0.2	2.8	4	0	0	4	4	4	1	Type	II	secretion	system	(T2SS),	protein	F
T2SSE	PF00437.20	gi|410670047|ref|YP_006922418.1|	-	4.4e-50	170.3	0.0	8.3e-50	169.4	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
BAR	PF03114.18	gi|410670047|ref|YP_006922418.1|	-	0.083	12.5	0.6	11	5.6	0.1	2.2	2	0	0	2	2	2	0	BAR	domain
AAA_23	PF13476.6	gi|410670047|ref|YP_006922418.1|	-	0.11	13.0	2.6	3.4	8.1	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
Colicin_E5	PF12106.8	gi|410670047|ref|YP_006922418.1|	-	0.14	12.5	0.1	0.35	11.2	0.1	1.6	1	0	0	1	1	1	0	Colicin	E5	ribonuclease	domain
AAA_29	PF13555.6	gi|410670047|ref|YP_006922418.1|	-	0.17	11.7	0.1	0.39	10.5	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_31	PF13614.6	gi|410670048|ref|YP_006922419.1|	-	1.9e-21	76.8	1.4	2.7e-21	76.3	1.4	1.2	1	0	0	1	1	1	1	AAA	domain
ParA	PF10609.9	gi|410670048|ref|YP_006922419.1|	-	3.9e-13	49.4	4.2	1.1e-11	44.7	4.2	2.4	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|410670048|ref|YP_006922419.1|	-	9.9e-13	48.3	0.4	1.5e-12	47.7	0.4	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
CBP_BcsQ	PF06564.12	gi|410670048|ref|YP_006922419.1|	-	1.4e-12	47.6	0.0	1.9e-12	47.2	0.0	1.2	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
Fer4_NifH	PF00142.18	gi|410670048|ref|YP_006922419.1|	-	9.1e-07	28.6	1.3	0.016	14.7	0.3	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
MipZ	PF09140.11	gi|410670048|ref|YP_006922419.1|	-	9.9e-07	28.3	1.0	2.7e-06	26.9	1.0	1.7	1	1	0	1	1	1	1	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|410670048|ref|YP_006922419.1|	-	7.7e-05	22.0	1.6	0.0093	15.2	0.8	2.2	2	0	0	2	2	2	2	Anion-transporting	ATPase
AAA_25	PF13481.6	gi|410670048|ref|YP_006922419.1|	-	0.0036	16.9	0.0	0.006	16.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_26	PF13500.6	gi|410670048|ref|YP_006922419.1|	-	0.022	14.6	0.2	0.056	13.3	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
CLP1_P	PF16575.5	gi|410670048|ref|YP_006922419.1|	-	0.078	12.8	0.2	1.5	8.5	0.2	2.6	2	1	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
DRMBL	PF07522.14	gi|410670048|ref|YP_006922419.1|	-	0.1	12.8	0.0	0.18	12.0	0.0	1.4	1	0	0	1	1	1	0	DNA	repair	metallo-beta-lactamase
Ribo_biogen_C	PF04034.13	gi|410670050|ref|YP_006922421.1|	-	3.4e-48	162.5	0.0	4e-48	162.3	0.0	1.1	1	0	0	1	1	1	1	Ribosome	biogenesis	protein,	C-terminal
RNA_Me_trans	PF04252.13	gi|410670050|ref|YP_006922421.1|	-	0.01	15.4	0.0	0.016	14.8	0.0	1.3	1	0	0	1	1	1	0	Predicted	SAM-dependent	RNA	methyltransferase
LDcluster4	PF18306.1	gi|410670051|ref|YP_006922422.1|	-	7.5e-44	149.1	7.6	8.6e-44	148.9	7.6	1.0	1	0	0	1	1	1	1	SLOG	cluster4	family
DNA_processg_A	PF02481.15	gi|410670051|ref|YP_006922422.1|	-	3.2e-07	29.8	2.3	2.1e-05	23.9	0.9	2.0	1	1	1	2	2	2	2	DNA	recombination-mediator	protein	A
Lysine_decarbox	PF03641.14	gi|410670051|ref|YP_006922422.1|	-	7.9e-06	26.0	1.2	8.2e-05	22.7	0.1	2.1	2	0	0	2	2	2	1	Possible	lysine	decarboxylase
LuxC	PF05893.14	gi|410670051|ref|YP_006922422.1|	-	0.16	10.9	0.7	0.47	9.4	0.1	1.8	2	0	0	2	2	2	0	Acyl-CoA	reductase	(LuxC)
Exo_endo_phos	PF03372.23	gi|410670052|ref|YP_006922423.1|	-	1.2e-23	83.8	0.0	1.5e-23	83.6	0.0	1.1	1	0	0	1	1	1	1	Endonuclease/Exonuclease/phosphatase	family
Exo_endo_phos_2	PF14529.6	gi|410670052|ref|YP_006922423.1|	-	0.013	15.4	0.0	0.042	13.7	0.0	2.0	2	1	0	2	2	2	0	Endonuclease-reverse	transcriptase
DDE_1	PF03184.19	gi|410670052|ref|YP_006922423.1|	-	0.1	12.3	0.0	0.57	9.8	0.0	1.9	2	0	0	2	2	2	0	DDE	superfamily	endonuclease
AA_permease_2	PF13520.6	gi|410670053|ref|YP_006922424.1|	-	8.8e-50	169.8	51.4	1.2e-49	169.3	51.4	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|410670053|ref|YP_006922424.1|	-	7.1e-39	133.7	47.7	1.8e-38	132.4	47.7	1.5	1	1	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.26	gi|410670053|ref|YP_006922424.1|	-	1.6e-22	80.5	0.5	2.6e-10	40.9	0.5	2.8	2	1	0	2	2	2	2	Universal	stress	protein	family
Spore_permease	PF03845.13	gi|410670053|ref|YP_006922424.1|	-	4e-10	39.0	18.0	4e-10	39.0	18.0	2.2	2	0	0	2	2	2	1	Spore	germination	protein
ABC_sub_bind	PF04392.12	gi|410670053|ref|YP_006922424.1|	-	0.0032	16.8	0.1	0.0049	16.2	0.1	1.2	1	0	0	1	1	1	1	ABC	transporter	substrate	binding	protein
Hs1pro-1_N	PF07231.12	gi|410670053|ref|YP_006922424.1|	-	0.025	14.3	0.2	0.051	13.3	0.2	1.4	1	0	0	1	1	1	0	Hs1pro-1	N-terminus
FUR	PF01475.19	gi|410670054|ref|YP_006922425.1|	-	6.5e-19	68.2	0.3	7.4e-19	68.1	0.3	1.1	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
PadR	PF03551.14	gi|410670054|ref|YP_006922425.1|	-	0.011	15.7	0.0	0.029	14.3	0.0	1.7	2	0	0	2	2	2	0	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.19	gi|410670054|ref|YP_006922425.1|	-	0.027	14.4	0.0	0.046	13.6	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF4423	PF14394.6	gi|410670054|ref|YP_006922425.1|	-	0.093	12.4	0.0	0.12	12.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_20	PF12840.7	gi|410670054|ref|YP_006922425.1|	-	0.12	12.5	0.0	0.18	11.9	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
Ribosomal_L19e	PF01280.20	gi|410670054|ref|YP_006922425.1|	-	0.16	12.0	0.0	0.2	11.7	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L19e
SR1P	PF13790.6	gi|410670054|ref|YP_006922425.1|	-	0.24	11.5	5.4	1.4	9.1	0.4	2.3	2	0	0	2	2	2	0	SR1	protein
AhpC-TSA	PF00578.21	gi|410670055|ref|YP_006922426.1|	-	3.9e-32	110.8	0.1	5.9e-32	110.2	0.1	1.3	1	0	0	1	1	1	1	AhpC/TSA	family
1-cysPrx_C	PF10417.9	gi|410670055|ref|YP_006922426.1|	-	1.3e-13	50.6	0.5	2.4e-13	49.7	0.5	1.5	1	0	0	1	1	1	1	C-terminal	domain	of	1-Cys	peroxiredoxin
Redoxin	PF08534.10	gi|410670055|ref|YP_006922426.1|	-	2.4e-11	43.5	0.0	3.4e-11	43.1	0.0	1.2	1	0	0	1	1	1	1	Redoxin
P_C10	PF14974.6	gi|410670055|ref|YP_006922426.1|	-	0.062	13.4	0.3	0.15	12.2	0.1	1.7	1	1	0	1	1	1	0	Protein	C10
Ferritin	PF00210.24	gi|410670056|ref|YP_006922427.1|	-	1.4e-24	86.6	0.3	1.5e-24	86.5	0.3	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.17	gi|410670056|ref|YP_006922427.1|	-	3.1e-05	24.4	0.0	0.0029	18.0	0.0	2.0	2	0	0	2	2	2	1	Rubrerythrin
Ferritin_2	PF13668.6	gi|410670056|ref|YP_006922427.1|	-	0.00058	20.1	0.0	0.0035	17.6	0.0	1.9	1	1	0	1	1	1	1	Ferritin-like	domain
COQ7	PF03232.13	gi|410670056|ref|YP_006922427.1|	-	0.0073	16.1	0.2	0.062	13.1	0.1	1.9	2	0	0	2	2	2	1	Ubiquinone	biosynthesis	protein	COQ7
DUF455	PF04305.14	gi|410670056|ref|YP_006922427.1|	-	0.027	14.0	0.3	3	7.3	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF455)
Topoisom_bac	PF01131.20	gi|410670057|ref|YP_006922428.1|	-	4.1e-125	418.0	0.8	5.2e-125	417.7	0.0	1.6	2	0	0	2	2	2	1	DNA	topoisomerase
Toprim	PF01751.22	gi|410670057|ref|YP_006922428.1|	-	1.8e-13	50.6	0.9	4.2e-13	49.4	0.9	1.6	1	0	0	1	1	1	1	Toprim	domain
zf-C4_Topoisom	PF01396.19	gi|410670057|ref|YP_006922428.1|	-	9.2e-13	47.7	2.2	9.2e-13	47.7	2.2	2.5	2	0	0	2	2	2	1	Topoisomerase	DNA	binding	C4	zinc	finger
HHH_5	PF14520.6	gi|410670057|ref|YP_006922428.1|	-	3.8e-06	27.4	0.3	1.2e-05	25.8	0.3	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.9	gi|410670057|ref|YP_006922428.1|	-	3.8e-05	23.4	0.0	0.00023	20.9	0.0	2.4	3	0	0	3	3	3	1	Fingers	domain	of	DNA	polymerase	lambda
Cdd1	PF11731.8	gi|410670057|ref|YP_006922428.1|	-	0.00018	21.7	0.0	0.0005	20.3	0.0	1.7	1	0	0	1	1	1	1	Pathogenicity	locus
IMS_HHH	PF11798.8	gi|410670057|ref|YP_006922428.1|	-	0.00022	21.3	1.2	0.00056	20.1	0.2	2.2	2	0	0	2	2	2	1	IMS	family	HHH	motif
BAF	PF02961.14	gi|410670057|ref|YP_006922428.1|	-	0.0062	16.9	0.2	0.015	15.7	0.2	1.6	1	0	0	1	1	1	1	Barrier	to	autointegration	factor
Arg_repressor	PF01316.21	gi|410670057|ref|YP_006922428.1|	-	0.31	10.8	1.6	0.53	10.1	0.5	1.9	2	0	0	2	2	2	0	Arginine	repressor,	DNA	binding	domain
Beta-Casp	PF10996.8	gi|410670058|ref|YP_006922429.1|	-	8.3e-13	48.6	0.0	8.8e-12	45.3	0.0	2.4	2	1	0	2	2	2	1	Beta-Casp	domain
Lactamase_B_2	PF12706.7	gi|410670058|ref|YP_006922429.1|	-	1.3e-08	34.7	0.2	2.1e-08	33.9	0.2	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
RMMBL	PF07521.12	gi|410670058|ref|YP_006922429.1|	-	1.5e-08	34.4	0.0	3.5e-08	33.2	0.0	1.7	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B	PF00753.27	gi|410670058|ref|YP_006922429.1|	-	1.9e-05	24.8	0.1	4.4e-05	23.6	0.1	1.8	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_6	PF16661.5	gi|410670058|ref|YP_006922429.1|	-	0.00052	19.5	0.0	0.0012	18.3	0.0	1.6	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|410670058|ref|YP_006922429.1|	-	0.0048	16.8	0.0	0.014	15.3	0.0	1.8	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
TPR_1	PF00515.28	gi|410670059|ref|YP_006922430.1|	-	6.5e-38	127.0	1.2	5.7e-09	35.4	0.0	4.5	4	0	0	4	4	4	4	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|410670059|ref|YP_006922430.1|	-	2.1e-32	108.6	0.4	3.1e-07	30.0	0.0	4.8	5	0	0	5	5	4	4	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|410670059|ref|YP_006922430.1|	-	1.1e-28	97.0	4.4	8.6e-08	31.8	0.0	4.7	5	0	0	5	5	4	4	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|410670059|ref|YP_006922430.1|	-	9e-22	76.5	0.1	2.2e-05	24.0	0.0	5.0	2	2	3	5	5	5	4	TPR	repeat
TPR_12	PF13424.6	gi|410670059|ref|YP_006922430.1|	-	3.8e-18	65.6	0.8	6.4e-07	29.6	0.1	4.1	3	1	0	3	3	3	3	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|410670059|ref|YP_006922430.1|	-	4.3e-17	60.8	0.4	0.00049	19.9	0.0	4.4	2	1	2	4	4	4	4	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|410670059|ref|YP_006922430.1|	-	1e-14	53.8	4.2	0.00076	19.7	0.0	5.6	4	2	1	5	5	5	2	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|410670059|ref|YP_006922430.1|	-	3.7e-14	52.2	0.0	0.001	19.7	0.0	5.1	3	1	2	5	5	5	3	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|410670059|ref|YP_006922430.1|	-	3.4e-12	46.8	0.0	8.6e-06	26.3	0.0	3.3	2	1	1	3	3	3	3	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|410670059|ref|YP_006922430.1|	-	4.4e-11	42.8	0.1	0.028	14.6	0.0	4.2	2	1	2	4	4	4	3	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|410670059|ref|YP_006922430.1|	-	1.2e-08	35.0	0.0	0.69	10.7	0.0	4.5	4	0	0	4	4	4	2	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|410670059|ref|YP_006922430.1|	-	2.1e-08	34.5	0.0	0.00074	20.0	0.0	3.1	2	1	1	3	3	3	2	Tetratricopeptide	repeat
TPR_10	PF13374.6	gi|410670059|ref|YP_006922430.1|	-	3e-06	26.9	0.3	1.6	8.7	0.0	4.4	4	0	0	4	4	4	2	Tetratricopeptide	repeat
Fis1_TPR_C	PF14853.6	gi|410670059|ref|YP_006922430.1|	-	4e-06	26.8	1.7	0.11	12.6	0.0	3.5	4	0	0	4	4	3	2	Fis1	C-terminal	tetratricopeptide	repeat
ANAPC3	PF12895.7	gi|410670059|ref|YP_006922430.1|	-	4.8e-05	23.5	0.7	0.0048	17.1	0.1	2.3	1	1	2	3	3	3	3	Anaphase-promoting	complex,	cyclosome,	subunit	3
RPN7	PF10602.9	gi|410670059|ref|YP_006922430.1|	-	0.00018	21.3	1.3	1.7	8.3	0.0	3.5	1	1	2	3	3	3	1	26S	proteasome	subunit	RPN7
Paf67	PF10255.9	gi|410670059|ref|YP_006922430.1|	-	0.00059	18.9	0.3	0.2	10.6	0.0	2.9	1	1	1	3	3	3	1	RNA	polymerase	I-associated	factor	PAF67
DUF3856	PF12968.7	gi|410670059|ref|YP_006922430.1|	-	0.0011	19.0	1.6	1.3	9.1	0.0	3.6	1	1	3	4	4	4	1	Domain	of	Unknown	Function	(DUF3856)
SRP_TPR_like	PF17004.5	gi|410670059|ref|YP_006922430.1|	-	0.0028	17.7	0.2	0.0075	16.3	0.1	1.7	1	1	1	2	2	2	1	Putative	TPR-like	repeat
Coatomer_E	PF04733.14	gi|410670059|ref|YP_006922430.1|	-	0.0031	17.0	0.0	1.4	8.2	0.0	2.1	1	1	1	2	2	2	2	Coatomer	epsilon	subunit
PPR	PF01535.20	gi|410670059|ref|YP_006922430.1|	-	0.0094	16.1	2.6	12	6.4	0.2	4.4	4	0	0	4	4	4	0	PPR	repeat
BTAD	PF03704.17	gi|410670059|ref|YP_006922430.1|	-	0.015	15.7	0.3	0.17	12.3	0.0	2.3	2	1	0	2	2	2	0	Bacterial	transcriptional	activator	domain
NTP_transf_3	PF12804.7	gi|410670061|ref|YP_006922432.1|	-	1.3e-31	110.1	0.0	1.6e-31	109.8	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|410670061|ref|YP_006922432.1|	-	1.1e-05	25.3	0.0	4.9e-05	23.2	0.0	2.0	2	1	0	2	2	2	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.26	gi|410670061|ref|YP_006922432.1|	-	0.00054	19.8	0.0	0.00061	19.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
CofC	PF01983.16	gi|410670061|ref|YP_006922432.1|	-	0.0015	17.8	0.0	0.0023	17.1	0.0	1.3	1	0	0	1	1	1	1	Guanylyl	transferase	CofC	like
DUF2064	PF09837.9	gi|410670061|ref|YP_006922432.1|	-	0.015	15.1	0.0	0.021	14.6	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
DUF460	PF04312.13	gi|410670062|ref|YP_006922433.1|	-	1.9e-49	167.0	0.1	3.7e-49	166.1	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF460)
acVLRF1	PF18859.1	gi|410670062|ref|YP_006922433.1|	-	0.0016	18.7	0.5	0.0055	17.0	0.1	2.2	2	0	0	2	2	1	1	Actinobacteria/chloroflexi	VLRF1	release	factor
Cast	PF10174.9	gi|410670062|ref|YP_006922433.1|	-	0.0018	16.6	12.2	0.0018	16.6	12.2	2.0	2	0	0	2	2	2	1	RIM-binding	protein	of	the	cytomatrix	active	zone
Exonuc_VII_L	PF02601.15	gi|410670062|ref|YP_006922433.1|	-	0.021	14.4	1.3	0.046	13.3	1.3	1.6	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
DUF4407	PF14362.6	gi|410670062|ref|YP_006922433.1|	-	0.075	12.4	3.1	0.15	11.4	3.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Fez1	PF06818.15	gi|410670062|ref|YP_006922433.1|	-	0.24	11.9	18.9	0.86	10.0	18.9	2.0	1	1	0	1	1	1	0	Fez1
Spc7	PF08317.11	gi|410670062|ref|YP_006922433.1|	-	0.83	8.5	14.8	0.52	9.1	11.6	2.0	1	1	1	2	2	2	0	Spc7	kinetochore	protein
DUF1664	PF07889.12	gi|410670062|ref|YP_006922433.1|	-	2.3	8.3	6.5	0.71	9.9	1.3	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF641	PF04859.12	gi|410670062|ref|YP_006922433.1|	-	2.5	8.4	10.1	12	6.2	2.2	2.7	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF641)
Sec8_exocyst	PF04048.14	gi|410670062|ref|YP_006922433.1|	-	2.8	7.8	9.8	2	8.3	1.9	3.2	3	0	0	3	3	3	0	Sec8	exocyst	complex	component	specific	domain
CC2-LZ	PF16516.5	gi|410670062|ref|YP_006922433.1|	-	3	8.3	11.3	12	6.3	1.9	2.8	2	0	0	2	2	2	0	Leucine	zipper	of	domain	CC2	of	NEMO,	NF-kappa-B	essential	modulator
Fib_alpha	PF08702.10	gi|410670062|ref|YP_006922433.1|	-	4.4	7.5	11.4	19	5.4	9.9	2.5	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Csm1_N	PF18504.1	gi|410670062|ref|YP_006922433.1|	-	6.2	7.2	17.4	1.3	9.4	2.2	3.3	3	1	0	3	3	2	0	Csm1	N-terminal	domain
FlaC_arch	PF05377.11	gi|410670062|ref|YP_006922433.1|	-	6.5	7.2	8.5	5.4	7.5	0.6	3.4	2	1	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DUF4164	PF13747.6	gi|410670062|ref|YP_006922433.1|	-	7.2	7.0	17.8	6.2	7.2	1.0	3.9	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4164)
RIO1	PF01163.22	gi|410670063|ref|YP_006922434.1|	-	1.7e-40	138.7	0.1	2.4e-40	138.1	0.1	1.2	1	0	0	1	1	1	1	RIO1	family
Rio2_N	PF09202.11	gi|410670063|ref|YP_006922434.1|	-	2.4e-27	94.9	0.1	4.1e-27	94.2	0.1	1.4	1	0	0	1	1	1	1	Rio2,	N-terminal
Pkinase	PF00069.25	gi|410670063|ref|YP_006922434.1|	-	5.1e-06	26.0	0.0	1e-05	25.0	0.0	1.5	1	1	0	1	1	1	1	Protein	kinase	domain
APH	PF01636.23	gi|410670063|ref|YP_006922434.1|	-	0.00029	20.9	0.2	0.029	14.3	0.0	2.1	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase_fungal	PF17667.1	gi|410670063|ref|YP_006922434.1|	-	0.018	13.8	0.0	0.022	13.6	0.0	1.2	1	0	0	1	1	1	0	Fungal	protein	kinase
DUF111	PF01969.17	gi|410670064|ref|YP_006922435.1|	-	8.6e-129	429.9	1.5	9.6e-129	429.7	1.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF111
Pro_3_hydrox_C	PF05373.11	gi|410670064|ref|YP_006922435.1|	-	0.052	13.6	0.0	0.15	12.1	0.0	1.7	1	0	0	1	1	1	0	L-proline	3-hydroxylase,	C-terminal
AIRC	PF00731.20	gi|410670065|ref|YP_006922436.1|	-	4.3e-14	52.3	9.3	2.2e-13	50.1	7.1	2.4	2	1	0	2	2	2	1	AIR	carboxylase
PALP	PF00291.25	gi|410670065|ref|YP_006922436.1|	-	0.002	17.6	0.7	0.0041	16.6	0.3	1.7	1	1	0	2	2	2	1	Pyridoxal-phosphate	dependent	enzyme
Potass_KdpF	PF09604.10	gi|410670066|ref|YP_006922437.1|	-	0.015	15.3	0.8	0.015	15.3	0.8	2.4	2	1	0	2	2	2	0	F	subunit	of	K+-transporting	ATPase	(Potass_KdpF)
Yip1	PF04893.17	gi|410670066|ref|YP_006922437.1|	-	0.039	13.7	5.9	0.045	13.5	5.9	1.1	1	0	0	1	1	1	0	Yip1	domain
FeoB_associated	PF12669.7	gi|410670066|ref|YP_006922437.1|	-	0.097	13.1	5.4	2.1	8.8	0.0	2.1	2	0	0	2	2	2	0	FeoB-associated	Cys-rich	membrane	protein
COX7a	PF02238.15	gi|410670066|ref|YP_006922437.1|	-	0.26	11.7	0.5	0.26	11.7	0.5	1.8	2	0	0	2	2	2	0	Cytochrome	c	oxidase	subunit	VII
RseC_MucC	PF04246.12	gi|410670066|ref|YP_006922437.1|	-	0.45	10.5	4.6	0.51	10.3	4.6	1.1	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
Herpes_LMP1	PF05297.11	gi|410670066|ref|YP_006922437.1|	-	1	8.5	4.8	1.1	8.4	4.8	1.0	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
DUF2207	PF09972.9	gi|410670066|ref|YP_006922437.1|	-	2.3	6.9	6.5	2.4	6.8	6.5	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF2111	PF09884.9	gi|410670067|ref|YP_006922438.1|	-	1.5e-35	121.1	2.3	2e-35	120.7	2.3	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2111)
Pyr_redox_2	PF07992.14	gi|410670069|ref|YP_006922440.1|	-	9e-46	156.4	6.6	1.1e-45	156.2	6.6	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|410670069|ref|YP_006922440.1|	-	5.9e-30	104.6	6.6	4.1e-23	82.1	1.1	2.1	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|410670069|ref|YP_006922440.1|	-	2.4e-16	60.1	9.3	1.6e-13	51.0	0.6	3.9	2	2	1	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|410670069|ref|YP_006922440.1|	-	5.5e-07	28.6	3.2	0.00015	20.6	0.1	3.0	3	0	0	3	3	3	2	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|410670069|ref|YP_006922440.1|	-	1.2e-06	28.0	1.1	0.00011	21.6	0.1	2.2	2	0	0	2	2	2	2	FAD	binding	domain
GIDA	PF01134.22	gi|410670069|ref|YP_006922440.1|	-	1.3e-06	27.8	7.4	0.0024	17.0	1.2	3.8	3	1	0	4	4	4	2	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|410670069|ref|YP_006922440.1|	-	1.3e-06	27.9	4.4	2.5e-05	23.6	0.3	2.6	2	1	0	2	2	2	1	Thi4	family
FAD_oxidored	PF12831.7	gi|410670069|ref|YP_006922440.1|	-	1.4e-06	27.9	0.3	1.4e-06	27.9	0.3	2.9	3	1	1	4	4	4	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|410670069|ref|YP_006922440.1|	-	1.7e-06	27.4	11.1	1.1e-05	24.8	0.9	3.9	3	1	1	4	4	4	2	FAD	binding	domain
DAO	PF01266.24	gi|410670069|ref|YP_006922440.1|	-	1.4e-05	24.9	12.5	0.0046	16.6	1.2	3.2	3	1	1	4	4	4	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|410670069|ref|YP_006922440.1|	-	3.9e-05	23.8	0.2	3.9e-05	23.8	0.2	1.8	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.12	gi|410670069|ref|YP_006922440.1|	-	5.1e-05	22.5	1.5	0.046	12.8	0.3	2.3	1	1	1	2	2	2	2	Lycopene	cyclase	protein
K_oxygenase	PF13434.6	gi|410670069|ref|YP_006922440.1|	-	6.2e-05	22.3	0.4	0.11	11.7	0.0	2.5	2	1	1	3	3	3	2	L-lysine	6-monooxygenase	(NADPH-requiring)
wnt	PF00110.19	gi|410670069|ref|YP_006922440.1|	-	0.013	15.2	0.0	0.019	14.5	0.0	1.2	1	0	0	1	1	1	0	wnt	family
NAD_binding_7	PF13241.6	gi|410670069|ref|YP_006922440.1|	-	0.024	15.0	1.6	0.079	13.4	0.2	2.4	2	1	0	2	2	2	0	Putative	NAD(P)-binding
FMO-like	PF00743.19	gi|410670069|ref|YP_006922440.1|	-	0.054	11.9	0.1	0.14	10.6	0.0	1.7	2	1	1	3	3	3	0	Flavin-binding	monooxygenase-like
NAD_binding_9	PF13454.6	gi|410670069|ref|YP_006922440.1|	-	0.058	13.4	1.9	2.7	8.0	0.1	2.5	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Thioredoxin_3	PF13192.6	gi|410670070|ref|YP_006922441.1|	-	6.1e-12	45.4	0.0	6.6e-12	45.3	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin	domain
Glutaredoxin	PF00462.24	gi|410670070|ref|YP_006922441.1|	-	1.1e-07	32.0	0.0	1.4e-07	31.6	0.0	1.1	1	0	0	1	1	1	1	Glutaredoxin
Thioredoxin	PF00085.20	gi|410670070|ref|YP_006922441.1|	-	5.3e-06	26.4	0.0	6e-06	26.2	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|410670070|ref|YP_006922441.1|	-	4.5e-05	23.8	0.3	8.5e-05	23.0	0.3	1.5	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.6	gi|410670070|ref|YP_006922441.1|	-	0.0053	17.1	0.4	0.077	13.3	0.0	2.2	1	1	1	2	2	2	1	Thioredoxin-like
DUF836	PF05768.14	gi|410670070|ref|YP_006922441.1|	-	0.0058	17.0	0.0	0.0065	16.9	0.0	1.1	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
DUF1525	PF07511.11	gi|410670070|ref|YP_006922441.1|	-	0.019	15.1	0.0	0.021	14.9	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1525)
TraF	PF13728.6	gi|410670070|ref|YP_006922441.1|	-	0.024	14.5	0.0	0.028	14.2	0.0	1.1	1	0	0	1	1	1	0	F	plasmid	transfer	operon	protein
GST_N	PF02798.20	gi|410670070|ref|YP_006922441.1|	-	0.028	14.8	0.1	0.046	14.1	0.1	1.3	1	0	0	1	1	1	0	Glutathione	S-transferase,	N-terminal	domain
DSBA	PF01323.20	gi|410670070|ref|YP_006922441.1|	-	0.085	12.6	0.1	0.28	10.9	0.0	1.7	1	1	1	2	2	2	0	DSBA-like	thioredoxin	domain
AIM24	PF01987.17	gi|410670071|ref|YP_006922442.1|	-	1.6e-36	126.0	0.2	1.9e-36	125.8	0.2	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
ApbE	PF02424.15	gi|410670072|ref|YP_006922443.1|	-	0.13	11.8	4.6	0.92	9.0	4.6	2.0	1	1	0	1	1	1	0	ApbE	family
Fer4	PF00037.27	gi|410670073|ref|YP_006922444.1|	-	1.3e-16	59.6	9.5	4.4e-09	35.8	0.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|410670073|ref|YP_006922444.1|	-	3.3e-12	46.8	37.6	5.9e-08	33.2	14.2	1.8	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410670073|ref|YP_006922444.1|	-	3.8e-11	42.6	12.0	9.7e-06	25.4	1.6	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|410670073|ref|YP_006922444.1|	-	3.9e-11	42.4	12.5	1.8e-05	24.5	1.6	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410670073|ref|YP_006922444.1|	-	7.9e-11	41.9	6.0	4.6e-05	23.5	0.2	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410670073|ref|YP_006922444.1|	-	2.4e-09	38.0	9.0	0.00027	21.8	0.6	2.3	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|410670073|ref|YP_006922444.1|	-	4.1e-09	36.4	11.5	8.4e-09	35.5	11.6	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410670073|ref|YP_006922444.1|	-	5.8e-09	35.9	27.2	5.2e-07	29.7	15.1	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410670073|ref|YP_006922444.1|	-	2.6e-07	31.1	5.8	0.0076	16.8	1.8	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|410670073|ref|YP_006922444.1|	-	2.7e-07	31.0	13.5	0.00096	19.7	3.3	2.7	3	0	0	3	3	3	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_18	PF13746.6	gi|410670073|ref|YP_006922444.1|	-	7.1e-06	26.2	10.7	6.9e-05	23.0	10.9	2.1	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|410670073|ref|YP_006922444.1|	-	8.9e-06	26.1	13.7	0.0047	17.3	1.8	2.4	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410670073|ref|YP_006922444.1|	-	3.3e-05	24.1	14.7	0.029	14.9	4.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|410670073|ref|YP_006922444.1|	-	4e-05	24.3	20.0	0.021	15.8	5.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|410670073|ref|YP_006922444.1|	-	0.00093	19.9	9.3	0.077	13.7	1.4	2.4	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_19	PF06902.11	gi|410670073|ref|YP_006922444.1|	-	0.034	14.2	3.3	0.047	13.8	3.3	1.2	1	0	0	1	1	1	0	Divergent	4Fe-4S	mono-cluster
Fer4_22	PF17179.4	gi|410670073|ref|YP_006922444.1|	-	0.041	14.7	14.7	0.36	11.7	2.1	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
NIL	PF09383.10	gi|410670073|ref|YP_006922444.1|	-	0.061	13.2	0.0	0.084	12.7	0.0	1.3	1	0	0	1	1	1	0	NIL	domain
ETF_QO	PF05187.13	gi|410670073|ref|YP_006922444.1|	-	0.24	11.6	5.9	0.74	10.0	2.3	2.2	1	1	1	2	2	2	0	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
c-SKI_SMAD_bind	PF08782.10	gi|410670073|ref|YP_006922444.1|	-	4	7.7	11.2	5.6	7.3	1.9	2.4	1	1	1	2	2	2	0	c-SKI	Smad4	binding	domain
HcyBio	PF01837.16	gi|410670074|ref|YP_006922445.1|	-	1.9e-144	480.8	0.2	2.5e-144	480.4	0.2	1.2	1	0	0	1	1	1	1	Homocysteine	biosynthesis	enzyme,	sulfur-incorporation
CBS	PF00571.28	gi|410670074|ref|YP_006922445.1|	-	1.4e-23	83.0	2.3	5.7e-12	45.9	0.1	2.6	2	0	0	2	2	2	2	CBS	domain
GARS_A	PF01071.19	gi|410670074|ref|YP_006922445.1|	-	0.029	14.1	1.5	2.2	8.0	0.0	2.4	2	0	0	2	2	2	0	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
HSP20	PF00011.21	gi|410670075|ref|YP_006922446.1|	-	6.6e-10	39.1	0.2	2.3e-08	34.1	0.2	2.2	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|410670075|ref|YP_006922446.1|	-	8.4e-10	38.1	0.0	1.2e-09	37.6	0.0	1.2	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
CS	PF04969.16	gi|410670075|ref|YP_006922446.1|	-	0.0023	18.9	0.0	0.0039	18.2	0.0	1.3	1	0	0	1	1	1	1	CS	domain
PIH1_CS	PF18201.1	gi|410670075|ref|YP_006922446.1|	-	0.0033	17.8	0.0	0.0049	17.2	0.0	1.3	1	0	0	1	1	1	1	PIH1	CS-like	domain
MFS_1	PF07690.16	gi|410670076|ref|YP_006922447.1|	-	2e-50	171.7	39.6	2e-50	171.7	39.6	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|410670076|ref|YP_006922447.1|	-	7.2e-06	25.1	23.7	1.4e-05	24.1	23.7	1.5	1	1	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_2	PF13347.6	gi|410670076|ref|YP_006922447.1|	-	0.00014	20.6	36.9	0.00076	18.1	13.7	3.1	1	1	2	3	3	3	2	MFS/sugar	transport	protein
DUF2892	PF11127.8	gi|410670077|ref|YP_006922448.1|	-	2.2e-15	56.4	0.2	2.8e-15	56.1	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
HATPase_c	PF02518.26	gi|410670078|ref|YP_006922449.1|	-	1.1e-29	103.1	0.0	3.1e-29	101.7	0.0	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|410670078|ref|YP_006922449.1|	-	2.4e-16	59.5	0.1	1.1e-12	47.8	0.0	3.4	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_3	PF13492.6	gi|410670078|ref|YP_006922449.1|	-	4.5e-07	30.3	0.0	7.3e-07	29.6	0.0	1.4	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.6	gi|410670078|ref|YP_006922449.1|	-	1.3e-06	28.8	0.0	7e-06	26.4	0.0	2.2	1	1	0	1	1	1	1	GAF	domain
GAF	PF01590.26	gi|410670078|ref|YP_006922449.1|	-	0.00057	20.5	0.0	0.0011	19.6	0.0	1.5	1	0	0	1	1	1	1	GAF	domain
HATPase_c_3	PF13589.6	gi|410670078|ref|YP_006922449.1|	-	0.0088	15.9	0.0	0.018	14.8	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|410670078|ref|YP_006922449.1|	-	0.025	14.5	0.0	0.044	13.7	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|410670078|ref|YP_006922449.1|	-	0.034	14.1	0.3	0.34	10.8	0.0	2.6	2	1	0	3	3	3	0	GHKL	domain
DUF3369	PF11849.8	gi|410670078|ref|YP_006922449.1|	-	0.068	13.4	2.0	0.48	10.6	0.3	2.9	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3369)
DASH_Dad4	PF08650.10	gi|410670078|ref|YP_006922449.1|	-	0.074	13.0	0.4	16	5.6	0.0	2.6	2	0	0	2	2	2	0	DASH	complex	subunit	Dad4
2-Hacid_dh_C	PF02826.19	gi|410670079|ref|YP_006922450.1|	-	3.5e-62	208.9	0.1	6.5e-62	208.0	0.1	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|410670079|ref|YP_006922450.1|	-	1.4e-41	141.3	3.1	8.5e-41	138.8	0.9	2.2	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
ACT	PF01842.25	gi|410670079|ref|YP_006922450.1|	-	1.9e-05	24.3	0.0	7.3e-05	22.5	0.0	2.1	1	0	0	1	1	1	1	ACT	domain
IlvN	PF07991.12	gi|410670079|ref|YP_006922450.1|	-	2.4e-05	24.0	0.3	7.9e-05	22.3	0.0	2.0	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
NAD_binding_2	PF03446.15	gi|410670079|ref|YP_006922450.1|	-	0.00041	20.6	2.3	0.00061	20.0	0.2	2.4	2	1	1	3	3	3	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.17	gi|410670079|ref|YP_006922450.1|	-	0.021	15.4	1.0	0.12	13.0	0.1	2.7	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_C	PF03720.15	gi|410670079|ref|YP_006922450.1|	-	0.047	14.1	0.2	0.17	12.3	0.1	2.0	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
DUF2240	PF09999.9	gi|410670081|ref|YP_006922452.1|	-	5.4e-45	152.6	0.0	6e-45	152.4	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2240)
Ribosomal_L18	PF17135.4	gi|410670082|ref|YP_006922453.1|	-	2.4e-13	49.9	0.1	2.7e-13	49.7	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	60S	L18	and	50S	L18e
Ribosomal_L27A	PF00828.19	gi|410670082|ref|YP_006922453.1|	-	7.7e-08	33.1	0.3	1.9e-07	31.8	0.3	1.8	1	1	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
Ribosomal_L13	PF00572.18	gi|410670083|ref|YP_006922454.1|	-	5.8e-12	46.0	0.1	9.1e-10	38.9	0.1	2.2	1	1	0	1	1	1	1	Ribosomal	protein	L13
Ribosomal_S9	PF00380.19	gi|410670084|ref|YP_006922455.1|	-	2.1e-33	115.4	0.4	2.4e-33	115.3	0.4	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
RNA_pol_N	PF01194.17	gi|410670085|ref|YP_006922456.1|	-	1.9e-13	50.4	0.2	2e-13	50.4	0.2	1.0	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
RNA_pol_Rpb6	PF01192.22	gi|410670086|ref|YP_006922457.1|	-	2.1e-09	37.1	0.0	2.4e-09	37.0	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb6
Ribosomal_S2	PF00318.20	gi|410670087|ref|YP_006922458.1|	-	8.9e-27	93.7	1.7	5.1e-15	55.3	1.1	2.2	1	1	1	2	2	2	2	Ribosomal	protein	S2
Peripla_BP_4	PF13407.6	gi|410670087|ref|YP_006922458.1|	-	0.088	12.4	2.7	0.14	11.7	1.9	1.7	1	1	1	2	2	2	0	Periplasmic	binding	protein	domain
Memo	PF01875.17	gi|410670088|ref|YP_006922459.1|	-	5.9e-73	245.3	0.0	6.6e-73	245.2	0.0	1.0	1	0	0	1	1	1	1	Memo-like	protein
LigB	PF02900.18	gi|410670088|ref|YP_006922459.1|	-	0.065	12.3	0.0	0.094	11.8	0.0	1.3	1	0	0	1	1	1	0	Catalytic	LigB	subunit	of	aromatic	ring-opening	dioxygenase
Peptidase_C58	PF03543.14	gi|410670088|ref|YP_006922459.1|	-	0.21	11.3	0.0	0.33	10.6	0.0	1.3	1	0	0	1	1	1	0	Yersinia/Haemophilus	virulence	surface	antigen
GHMP_kinases_N	PF00288.26	gi|410670089|ref|YP_006922460.1|	-	2.4e-17	62.9	0.1	2.4e-17	62.9	0.1	2.0	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|410670089|ref|YP_006922460.1|	-	5.6e-16	58.7	0.9	5.6e-16	58.7	0.9	2.2	3	0	0	3	3	3	1	GHMP	kinases	C	terminal
GalKase_gal_bdg	PF10509.9	gi|410670089|ref|YP_006922460.1|	-	0.0027	17.2	0.0	0.0055	16.2	0.0	1.5	1	0	0	1	1	1	1	Galactokinase	galactose-binding	signature
AA_kinase	PF00696.28	gi|410670090|ref|YP_006922461.1|	-	2.2e-44	151.9	2.4	2.5e-44	151.7	2.4	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
AAA_8	PF12780.7	gi|410670090|ref|YP_006922461.1|	-	0.055	12.8	0.0	0.081	12.2	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region	D4
FMN_dh	PF01070.18	gi|410670091|ref|YP_006922462.1|	-	1.6e-30	106.3	1.8	7.2e-20	71.3	1.3	2.4	1	1	1	2	2	2	2	FMN-dependent	dehydrogenase
IMPDH	PF00478.25	gi|410670091|ref|YP_006922462.1|	-	2.1e-05	23.7	6.0	0.0015	17.6	0.1	3.3	3	1	0	3	3	3	2	IMP	dehydrogenase	/	GMP	reductase	domain
NMO	PF03060.15	gi|410670091|ref|YP_006922462.1|	-	0.00068	19.1	0.5	0.0019	17.7	0.3	1.7	2	0	0	2	2	2	1	Nitronate	monooxygenase
DHO_dh	PF01180.21	gi|410670091|ref|YP_006922462.1|	-	0.0018	17.6	6.4	0.0021	17.3	0.5	2.5	2	1	1	3	3	3	1	Dihydroorotate	dehydrogenase
Glu_synthase	PF01645.17	gi|410670091|ref|YP_006922462.1|	-	0.033	13.3	2.3	0.11	11.6	2.3	1.9	1	1	0	1	1	1	0	Conserved	region	in	glutamate	synthase
DUF3172	PF11371.8	gi|410670091|ref|YP_006922462.1|	-	0.2	11.4	0.0	0.32	10.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3172)
Lactamase_B_2	PF12706.7	gi|410670092|ref|YP_006922463.1|	-	3.9e-10	39.6	3.4	4.1e-10	39.5	0.4	2.1	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
RMMBL	PF07521.12	gi|410670092|ref|YP_006922463.1|	-	1.4e-08	34.5	0.8	5e-08	32.7	0.1	2.1	2	0	0	2	2	2	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B	PF00753.27	gi|410670092|ref|YP_006922463.1|	-	6.4e-08	32.8	3.1	2.8e-07	30.7	3.1	2.1	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RPAP1_C	PF08620.10	gi|410670092|ref|YP_006922463.1|	-	0.17	12.0	0.2	0.44	10.7	0.2	1.7	1	0	0	1	1	1	0	RPAP1-like,	C-terminal
SfsA_N	PF17746.1	gi|410670092|ref|YP_006922463.1|	-	0.17	12.0	0.0	0.71	10.1	0.0	2.0	1	0	0	1	1	1	0	SfsA	N-terminal	OB	domain
polyprenyl_synt	PF00348.17	gi|410670093|ref|YP_006922464.1|	-	7.6e-73	244.7	0.0	9.1e-73	244.5	0.0	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
PEP-utilizers_C	PF02896.18	gi|410670094|ref|YP_006922465.1|	-	2.1e-93	312.6	0.2	4.6e-93	311.5	0.0	1.6	2	0	0	2	2	2	1	PEP-utilising	enzyme,	TIM	barrel	domain
PPDK_N	PF01326.19	gi|410670094|ref|YP_006922465.1|	-	8.1e-63	212.7	0.0	1.7e-45	155.8	0.0	3.3	1	1	1	2	2	2	2	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
PEP-utilizers	PF00391.23	gi|410670094|ref|YP_006922465.1|	-	9.9e-29	98.9	1.4	9.9e-29	98.9	1.4	2.2	3	0	0	3	3	3	1	PEP-utilising	enzyme,	mobile	domain
Gar1	PF04410.14	gi|410670095|ref|YP_006922466.1|	-	3.3e-09	36.7	0.0	3.6e-09	36.6	0.0	1.1	1	0	0	1	1	1	1	Gar1/Naf1	RNA	binding	region
TFIIB	PF00382.19	gi|410670096|ref|YP_006922467.1|	-	8e-45	150.8	1.1	2.2e-21	75.7	0.3	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|410670096|ref|YP_006922467.1|	-	4.2e-18	64.6	1.1	4.2e-18	64.6	1.1	1.7	2	0	0	2	2	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.16	gi|410670096|ref|YP_006922467.1|	-	4.2e-05	23.0	0.5	0.019	14.4	0.1	3.1	2	0	0	2	2	2	1	Sigma-70,	region	4
OrfB_Zn_ribbon	PF07282.11	gi|410670096|ref|YP_006922467.1|	-	0.002	18.0	0.4	0.0056	16.6	0.4	1.8	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Lar_restr_allev	PF14354.6	gi|410670096|ref|YP_006922467.1|	-	0.012	16.0	1.2	0.1	13.0	0.3	2.6	3	0	0	3	3	3	0	Restriction	alleviation	protein	Lar
HypA	PF01155.19	gi|410670096|ref|YP_006922467.1|	-	0.012	15.6	0.7	0.14	12.2	0.5	2.4	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
HTH_AsnC-type	PF13404.6	gi|410670096|ref|YP_006922467.1|	-	0.016	15.0	0.9	0.057	13.3	0.2	2.3	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
DZR	PF12773.7	gi|410670096|ref|YP_006922467.1|	-	0.022	14.8	0.9	0.12	12.4	0.3	2.2	2	0	0	2	2	2	0	Double	zinc	ribbon
A2L_zn_ribbon	PF08792.10	gi|410670096|ref|YP_006922467.1|	-	0.026	14.3	1.5	0.72	9.6	1.8	2.4	1	1	1	2	2	2	0	A2L	zinc	ribbon	domain
Ribosomal_S27e	PF01667.17	gi|410670096|ref|YP_006922467.1|	-	0.031	14.0	0.5	0.031	14.0	0.5	1.8	2	0	0	2	2	2	0	Ribosomal	protein	S27
RPA_interact_C	PF14768.6	gi|410670096|ref|YP_006922467.1|	-	0.032	14.8	0.1	2.3	8.9	0.0	2.4	2	0	0	2	2	2	0	Replication	protein	A	interacting	C-terminal
Cyclin_C	PF02984.19	gi|410670096|ref|YP_006922467.1|	-	0.052	13.6	0.0	8.4	6.5	0.0	2.4	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
DNA_RNApol_7kD	PF03604.13	gi|410670096|ref|YP_006922467.1|	-	0.099	12.3	0.1	0.099	12.3	0.1	2.8	2	1	1	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DUF2318	PF10080.9	gi|410670096|ref|YP_006922467.1|	-	0.1	12.7	0.6	0.77	9.9	0.3	2.2	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2318)
Zn-ribbon_8	PF09723.10	gi|410670096|ref|YP_006922467.1|	-	0.14	12.3	6.6	0.16	12.1	0.5	3.1	2	1	1	3	3	3	0	Zinc	ribbon	domain
zf-ACC	PF17848.1	gi|410670096|ref|YP_006922467.1|	-	0.28	11.3	3.0	9.4	6.4	1.5	2.8	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Elf1	PF05129.13	gi|410670096|ref|YP_006922467.1|	-	0.28	11.2	2.4	0.29	11.2	0.5	1.9	2	0	0	2	2	2	0	Transcription	elongation	factor	Elf1	like
zf-ribbon_3	PF13248.6	gi|410670096|ref|YP_006922467.1|	-	0.32	10.5	3.2	3.1	7.3	3.3	2.3	1	1	0	1	1	1	0	zinc-ribbon	domain
HTH_31	PF13560.6	gi|410670096|ref|YP_006922467.1|	-	0.33	11.3	5.4	7.7	6.9	0.1	3.7	4	0	0	4	4	3	0	Helix-turn-helix	domain
zinc_ribbon_6	PF14599.6	gi|410670096|ref|YP_006922467.1|	-	0.39	10.8	3.9	1.7	8.7	1.8	3.0	3	1	0	3	3	2	0	Zinc-ribbon
Stc1	PF12898.7	gi|410670096|ref|YP_006922467.1|	-	0.45	11.1	3.8	0.47	11.0	0.5	2.4	3	0	0	3	3	2	0	Stc1	domain
zf-Mss51	PF13824.6	gi|410670096|ref|YP_006922467.1|	-	0.86	9.8	3.6	34	4.6	1.9	3.3	3	1	1	4	4	3	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Zn_Tnp_IS1595	PF12760.7	gi|410670096|ref|YP_006922467.1|	-	1.5	8.9	4.8	0.23	11.5	0.5	1.9	2	0	0	2	2	1	0	Transposase	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|410670096|ref|YP_006922467.1|	-	1.9	8.5	5.3	0.97	9.4	1.0	2.7	2	0	0	2	2	2	0	Nudix	N-terminal
zf-NADH-PPase	PF09297.11	gi|410670096|ref|YP_006922467.1|	-	3.5	7.4	6.0	0.45	10.2	0.5	2.4	2	1	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
LysE	PF01810.18	gi|410670097|ref|YP_006922468.1|	-	6.8e-28	97.5	13.3	7.7e-28	97.3	13.3	1.0	1	0	0	1	1	1	1	LysE	type	translocator
Met_10	PF02475.16	gi|410670098|ref|YP_006922469.1|	-	1.9e-60	204.0	0.2	2.7e-60	203.5	0.2	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Trm5_N	PF18093.1	gi|410670098|ref|YP_006922469.1|	-	3.2e-17	62.2	0.0	1e-16	60.6	0.0	1.9	1	0	0	1	1	1	1	tRNA	methyltransferase	5	N-terminal	domain
MTS	PF05175.14	gi|410670098|ref|YP_006922469.1|	-	8.7e-10	38.4	0.1	1.7e-09	37.5	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|410670098|ref|YP_006922469.1|	-	1.7e-06	28.6	0.0	5.1e-06	27.1	0.0	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|410670098|ref|YP_006922469.1|	-	1.8e-06	27.8	0.0	3.9e-06	26.7	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
TRM	PF02005.16	gi|410670098|ref|YP_006922469.1|	-	2.6e-06	26.9	0.1	3.1e-06	26.6	0.1	1.1	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
Cons_hypoth95	PF03602.15	gi|410670098|ref|YP_006922469.1|	-	2.6e-05	23.9	0.1	8.1e-05	22.3	0.0	1.7	1	1	1	2	2	2	1	Conserved	hypothetical	protein	95
Methyltransf_15	PF09445.10	gi|410670098|ref|YP_006922469.1|	-	0.00019	21.0	0.0	0.00067	19.3	0.0	1.7	1	1	1	2	2	2	1	RNA	cap	guanine-N2	methyltransferase
PrmA	PF06325.13	gi|410670098|ref|YP_006922469.1|	-	0.00024	20.6	0.2	0.0004	19.9	0.2	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_16	PF10294.9	gi|410670098|ref|YP_006922469.1|	-	0.0015	18.3	0.0	0.0024	17.7	0.0	1.2	1	0	0	1	1	1	1	Lysine	methyltransferase
Methyltransf_4	PF02390.17	gi|410670098|ref|YP_006922469.1|	-	0.0018	17.8	0.0	0.003	17.1	0.0	1.4	1	0	0	1	1	1	1	Putative	methyltransferase
Methyltr_RsmB-F	PF01189.17	gi|410670098|ref|YP_006922469.1|	-	0.0031	17.2	0.0	0.0061	16.2	0.0	1.5	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
Methyltransf_12	PF08242.12	gi|410670098|ref|YP_006922469.1|	-	0.0033	18.1	0.1	0.0079	16.9	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
N6_Mtase	PF02384.16	gi|410670098|ref|YP_006922469.1|	-	0.0098	15.2	0.0	0.016	14.5	0.0	1.3	1	0	0	1	1	1	1	N-6	DNA	Methylase
PCMT	PF01135.19	gi|410670098|ref|YP_006922469.1|	-	0.012	15.3	0.0	0.027	14.2	0.0	1.6	1	1	1	2	2	2	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_24	PF13578.6	gi|410670098|ref|YP_006922469.1|	-	0.019	16.0	0.0	0.047	14.7	0.0	1.7	1	0	0	1	1	1	0	Methyltransferase	domain
PRMT5	PF05185.16	gi|410670098|ref|YP_006922469.1|	-	0.021	14.7	0.0	0.034	14.0	0.0	1.3	1	0	0	1	1	1	0	PRMT5	arginine-N-methyltransferase
RrnaAD	PF00398.20	gi|410670098|ref|YP_006922469.1|	-	0.024	13.7	0.0	0.036	13.1	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
ADH_zinc_N	PF00107.26	gi|410670098|ref|YP_006922469.1|	-	0.076	13.0	0.0	0.19	11.7	0.0	1.7	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
tRNA_U5-meth_tr	PF05958.11	gi|410670098|ref|YP_006922469.1|	-	0.15	11.0	0.0	0.23	10.4	0.0	1.2	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
Response_reg	PF00072.24	gi|410670099|ref|YP_006922470.1|	-	3e-23	82.1	0.1	3.4e-23	82.0	0.1	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Pribosyltran	PF00156.27	gi|410670099|ref|YP_006922470.1|	-	0.024	14.1	0.2	0.16	11.5	0.0	2.0	2	0	0	2	2	2	0	Phosphoribosyl	transferase	domain
Methyltransf_31	PF13847.6	gi|410670099|ref|YP_006922470.1|	-	0.15	11.9	0.0	0.16	11.7	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
CheF-arch	PF04283.12	gi|410670100|ref|YP_006922471.1|	-	0.0014	18.5	0.3	0.0026	17.5	0.3	1.4	1	0	0	1	1	1	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
DUF4391	PF14335.6	gi|410670100|ref|YP_006922471.1|	-	0.021	14.5	1.0	0.021	14.5	1.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4391)
HD	PF01966.22	gi|410670102|ref|YP_006922473.1|	-	3.6e-08	33.7	0.1	6.6e-08	32.8	0.1	1.4	1	0	0	1	1	1	1	HD	domain
TM_helix	PF05552.12	gi|410670103|ref|YP_006922474.1|	-	5.3e-19	67.9	50.2	1.6e-09	37.6	7.3	5.1	5	1	0	6	6	6	3	Conserved	TM	helix
Aminotran_1_2	PF00155.21	gi|410670105|ref|YP_006922476.1|	-	6.2e-59	200.0	0.0	7e-59	199.8	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|410670105|ref|YP_006922476.1|	-	2.6e-08	33.6	0.0	3.8e-08	33.0	0.0	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.20	gi|410670105|ref|YP_006922476.1|	-	2.8e-07	29.4	0.0	4.4e-07	28.8	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.19	gi|410670105|ref|YP_006922476.1|	-	3.7e-05	22.8	0.0	5.8e-05	22.2	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|410670105|ref|YP_006922476.1|	-	0.019	14.3	0.0	0.036	13.4	0.0	1.4	1	0	0	1	1	1	0	Beta-eliminating	lyase
Fe_dep_repress	PF01325.19	gi|410670106|ref|YP_006922477.1|	-	7.4e-17	61.3	1.2	1.1e-16	60.7	1.2	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Fe_dep_repr_C	PF02742.15	gi|410670106|ref|YP_006922477.1|	-	3.3e-14	52.7	0.5	6.7e-14	51.7	0.5	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
LexA_DNA_bind	PF01726.16	gi|410670106|ref|YP_006922477.1|	-	0.00035	20.3	0.0	0.00063	19.5	0.0	1.4	1	0	0	1	1	1	1	LexA	DNA	binding	domain
MarR_2	PF12802.7	gi|410670106|ref|YP_006922477.1|	-	0.00055	19.8	0.0	0.00098	19.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|410670106|ref|YP_006922477.1|	-	0.00085	18.8	0.0	0.0016	17.9	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
FeoC	PF09012.10	gi|410670106|ref|YP_006922477.1|	-	0.0046	17.0	0.0	0.0067	16.5	0.0	1.3	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
TrmB	PF01978.19	gi|410670106|ref|YP_006922477.1|	-	0.009	15.9	0.2	0.016	15.1	0.2	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|410670106|ref|YP_006922477.1|	-	0.016	15.1	0.0	0.04	13.8	0.0	1.6	2	0	0	2	2	2	0	MarR	family
HTH_IclR	PF09339.10	gi|410670106|ref|YP_006922477.1|	-	0.017	14.9	0.0	0.032	14.0	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|410670106|ref|YP_006922477.1|	-	0.041	14.2	0.0	0.06	13.7	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
ArsR	PF09824.9	gi|410670106|ref|YP_006922477.1|	-	0.051	13.2	0.0	0.072	12.7	0.0	1.2	1	0	0	1	1	1	0	ArsR	transcriptional	regulator
HTH_5	PF01022.20	gi|410670106|ref|YP_006922477.1|	-	0.064	13.1	0.0	0.099	12.5	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_micro	PF17007.5	gi|410670106|ref|YP_006922477.1|	-	0.1	11.4	0.1	0.12	11.1	0.1	1.1	1	0	0	1	1	1	0	HTH-like
FeoA	PF04023.14	gi|410670107|ref|YP_006922478.1|	-	8.8e-19	67.5	0.2	9.7e-19	67.4	0.2	1.0	1	0	0	1	1	1	1	FeoA	domain
FeoB_N	PF02421.18	gi|410670108|ref|YP_006922479.1|	-	2.6e-66	221.9	0.2	4.3e-66	221.3	0.2	1.3	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Gate	PF07670.14	gi|410670108|ref|YP_006922479.1|	-	1.3e-44	151.0	19.6	4.5e-31	107.4	3.7	2.7	3	0	0	3	3	3	2	Nucleoside	recognition
FeoB_C	PF07664.12	gi|410670108|ref|YP_006922479.1|	-	5.4e-22	77.2	1.6	5.4e-22	77.2	1.6	3.2	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B	C	terminus
MMR_HSR1	PF01926.23	gi|410670108|ref|YP_006922479.1|	-	6.5e-19	68.1	0.0	1.4e-18	67.0	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_Cyto	PF17910.1	gi|410670108|ref|YP_006922479.1|	-	6.9e-14	52.2	0.3	1.4e-13	51.2	0.3	1.5	1	0	0	1	1	1	1	FeoB	cytosolic	helical	domain
SRPRB	PF09439.10	gi|410670108|ref|YP_006922479.1|	-	0.0011	18.5	0.0	0.0018	17.7	0.0	1.3	1	0	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
AIG1	PF04548.16	gi|410670108|ref|YP_006922479.1|	-	0.0095	15.3	0.0	0.014	14.8	0.0	1.3	1	0	0	1	1	1	1	AIG1	family
MeaB	PF03308.16	gi|410670108|ref|YP_006922479.1|	-	0.016	14.2	0.1	0.72	8.8	0.0	2.2	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Dynamin_N	PF00350.23	gi|410670108|ref|YP_006922479.1|	-	0.078	13.0	0.1	18	5.3	0.1	2.5	2	0	0	2	2	2	0	Dynamin	family
RsgA_GTPase	PF03193.16	gi|410670108|ref|YP_006922479.1|	-	0.19	11.6	2.6	1.4	8.8	0.0	2.5	3	0	0	3	3	3	0	RsgA	GTPase
DUF4383	PF14325.6	gi|410670109|ref|YP_006922480.1|	-	0.044	14.1	5.6	0.066	13.5	5.6	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4383)
Tetraspanin	PF00335.20	gi|410670109|ref|YP_006922480.1|	-	2.4	7.8	5.9	2.7	7.6	5.9	1.1	1	0	0	1	1	1	0	Tetraspanin	family
TMEM238	PF15125.6	gi|410670109|ref|YP_006922480.1|	-	2.5	8.4	17.9	1.8	8.8	7.5	3.7	2	1	1	3	3	3	0	TMEM238	protein	family
FeoC	PF09012.10	gi|410670110|ref|YP_006922481.1|	-	2.4e-08	33.9	0.1	3.4e-08	33.4	0.1	1.3	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
HTH_24	PF13412.6	gi|410670110|ref|YP_006922481.1|	-	4.3e-05	23.0	0.0	6.4e-05	22.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Fe_dep_repress	PF01325.19	gi|410670110|ref|YP_006922481.1|	-	0.00023	21.3	0.0	0.00038	20.6	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|410670110|ref|YP_006922481.1|	-	0.00043	19.9	0.0	0.00057	19.5	0.0	1.2	1	0	0	1	1	1	1	Sigma-70,	region	4
MarR_2	PF12802.7	gi|410670110|ref|YP_006922481.1|	-	0.00051	19.9	0.0	0.00064	19.6	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_45	PF14947.6	gi|410670110|ref|YP_006922481.1|	-	0.0011	18.9	0.2	0.94	9.5	0.1	2.1	2	0	0	2	2	2	2	Winged	helix-turn-helix
Sigma70_r4	PF04545.16	gi|410670110|ref|YP_006922481.1|	-	0.0015	18.0	0.0	0.0022	17.5	0.0	1.2	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_IclR	PF09339.10	gi|410670110|ref|YP_006922481.1|	-	0.0043	16.8	0.0	0.0062	16.3	0.0	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|410670110|ref|YP_006922481.1|	-	0.005	16.7	0.0	0.0072	16.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|410670110|ref|YP_006922481.1|	-	0.0077	16.3	0.0	0.011	15.8	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|410670110|ref|YP_006922481.1|	-	0.011	15.8	0.0	0.017	15.1	0.0	1.4	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
MarR	PF01047.22	gi|410670110|ref|YP_006922481.1|	-	0.021	14.7	0.0	0.029	14.3	0.0	1.2	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.20	gi|410670110|ref|YP_006922481.1|	-	0.023	15.0	0.0	0.033	14.5	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_28	PF13518.6	gi|410670110|ref|YP_006922481.1|	-	0.025	14.7	0.0	0.034	14.3	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|410670110|ref|YP_006922481.1|	-	0.025	15.1	0.1	0.068	13.7	0.0	1.6	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HxlR	PF01638.17	gi|410670110|ref|YP_006922481.1|	-	0.03	14.1	0.0	0.44	10.4	0.0	2.0	2	0	0	2	2	2	0	HxlR-like	helix-turn-helix
CENP-B_N	PF04218.13	gi|410670110|ref|YP_006922481.1|	-	0.048	13.3	0.0	0.078	12.6	0.0	1.4	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
HTH_1	PF00126.27	gi|410670110|ref|YP_006922481.1|	-	0.089	12.8	0.0	0.53	10.3	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
LexA_DNA_bind	PF01726.16	gi|410670110|ref|YP_006922481.1|	-	0.11	12.3	0.0	0.17	11.7	0.0	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_30	PF13556.6	gi|410670110|ref|YP_006922481.1|	-	0.11	12.4	0.0	0.14	12.0	0.0	1.2	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_11	PF08279.12	gi|410670110|ref|YP_006922481.1|	-	0.13	12.3	0.0	0.17	11.8	0.0	1.2	1	0	0	1	1	1	0	HTH	domain
TnsD	PF15978.5	gi|410670110|ref|YP_006922481.1|	-	0.13	11.3	0.0	0.13	11.3	0.0	1.1	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
HTH_Crp_2	PF13545.6	gi|410670110|ref|YP_006922481.1|	-	0.13	12.2	0.0	0.17	11.9	0.0	1.1	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|410670110|ref|YP_006922481.1|	-	0.16	11.8	0.0	0.26	11.1	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF4423	PF14394.6	gi|410670110|ref|YP_006922481.1|	-	0.19	11.4	0.0	0.24	11.1	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
RACo_C_ter	PF14574.6	gi|410670111|ref|YP_006922482.1|	-	8.6e-72	241.3	4.8	1.1e-71	240.9	3.8	1.7	2	0	0	2	2	2	1	C-terminal	domain	of	RACo	the	ASKHA	domain
Raco_middle	PF17651.1	gi|410670111|ref|YP_006922482.1|	-	5.6e-13	48.9	0.8	2.6e-10	40.2	0.0	3.3	3	1	0	3	3	3	1	RACo	middle	region
Fer4_16	PF13484.6	gi|410670111|ref|YP_006922482.1|	-	9.5e-06	26.5	8.6	0.0013	19.6	1.1	2.7	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|410670111|ref|YP_006922482.1|	-	1.8e-05	24.8	9.1	3.8e-05	23.7	9.1	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|410670111|ref|YP_006922482.1|	-	4.6e-05	23.9	9.3	0.00012	22.6	9.3	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_11	PF13247.6	gi|410670111|ref|YP_006922482.1|	-	6.9e-05	22.9	3.4	0.00015	21.8	3.4	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410670111|ref|YP_006922482.1|	-	8.7e-05	22.4	14.5	0.037	14.1	2.6	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|410670111|ref|YP_006922482.1|	-	0.00024	20.8	13.5	0.0016	18.2	2.8	2.6	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410670111|ref|YP_006922482.1|	-	0.0014	18.7	10.3	0.0029	17.7	10.3	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|410670111|ref|YP_006922482.1|	-	0.0052	17.0	4.7	0.015	15.5	4.7	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410670111|ref|YP_006922482.1|	-	0.0065	16.5	12.8	0.31	11.2	1.5	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|410670111|ref|YP_006922482.1|	-	0.019	15.1	15.3	0.27	11.4	15.9	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|410670111|ref|YP_006922482.1|	-	0.074	13.5	6.7	0.3	11.6	0.3	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410670111|ref|YP_006922482.1|	-	0.08	13.5	5.8	0.3	11.6	0.2	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410670111|ref|YP_006922482.1|	-	1.1	9.9	15.1	1.3	9.7	2.3	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|410670111|ref|YP_006922482.1|	-	2.1	9.5	15.8	3.5	8.8	2.5	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
cobW	PF02492.19	gi|410670112|ref|YP_006922483.1|	-	1.3e-37	129.1	1.3	1.9e-37	128.5	1.3	1.2	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
MeaB	PF03308.16	gi|410670112|ref|YP_006922483.1|	-	0.0026	16.8	0.4	0.0057	15.7	0.4	1.6	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
SRP54	PF00448.22	gi|410670112|ref|YP_006922483.1|	-	0.0041	16.8	1.0	0.014	15.0	0.1	2.2	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
CbiA	PF01656.23	gi|410670112|ref|YP_006922483.1|	-	0.026	14.6	1.8	0.099	12.7	1.8	2.1	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DUF2922	PF11148.8	gi|410670112|ref|YP_006922483.1|	-	0.06	13.1	1.6	0.32	10.8	0.1	2.9	2	1	2	4	4	4	0	Protein	of	unknown	function	(DUF2922)
TK	PF00265.18	gi|410670112|ref|YP_006922483.1|	-	0.063	13.1	0.0	0.14	12.0	0.0	1.6	1	0	0	1	1	1	0	Thymidine	kinase
MobB	PF03205.14	gi|410670112|ref|YP_006922483.1|	-	0.093	12.6	0.1	0.22	11.4	0.1	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Zeta_toxin	PF06414.12	gi|410670112|ref|YP_006922483.1|	-	0.13	11.5	0.1	0.32	10.2	0.1	1.6	1	0	0	1	1	1	0	Zeta	toxin
B12-binding_2	PF02607.17	gi|410670114|ref|YP_006922485.1|	-	1.1e-18	67.4	1.8	1.4e-18	67.1	0.3	1.9	2	1	0	2	2	2	1	B12	binding	domain
B12-binding	PF02310.19	gi|410670114|ref|YP_006922485.1|	-	7e-18	64.8	0.4	1.2e-17	64.1	0.4	1.3	1	0	0	1	1	1	1	B12	binding	domain
MtaB	PF12176.8	gi|410670115|ref|YP_006922486.1|	-	3e-218	725.2	2.7	3.3e-218	725.1	2.7	1.0	1	0	0	1	1	1	1	Methanol-cobalamin	methyltransferase	B	subunit
Hydant_A_N	PF05378.13	gi|410670116|ref|YP_006922487.1|	-	6.9e-32	110.6	6.4	1.4e-28	99.8	1.3	3.4	2	1	0	2	2	2	2	Hydantoinase/oxoprolinase	N-terminal	region
Hydantoinase_A	PF01968.18	gi|410670116|ref|YP_006922487.1|	-	6.6e-31	107.6	3.9	4.5e-30	104.9	0.2	2.8	3	0	0	3	3	3	1	Hydantoinase/oxoprolinase
MutL	PF13941.6	gi|410670116|ref|YP_006922487.1|	-	1.8e-08	33.4	2.5	0.00029	19.6	0.3	2.3	2	0	0	2	2	2	2	MutL	protein
Actin	PF00022.19	gi|410670116|ref|YP_006922487.1|	-	0.025	13.2	0.2	0.041	12.5	0.2	1.2	1	0	0	1	1	1	0	Actin
ROK	PF00480.20	gi|410670116|ref|YP_006922487.1|	-	0.03	13.8	0.1	0.058	12.9	0.1	1.4	1	0	0	1	1	1	0	ROK	family
Sda	PF08970.10	gi|410670116|ref|YP_006922487.1|	-	0.076	12.8	0.0	0.17	11.6	0.0	1.6	1	0	0	1	1	1	0	Sporulation	inhibitor	A
BcrAD_BadFG	PF01869.20	gi|410670116|ref|YP_006922487.1|	-	0.12	11.8	0.5	0.57	9.6	0.5	2.1	1	1	1	2	2	2	0	BadF/BadG/BcrA/BcrD	ATPase	family
URO-D	PF01208.17	gi|410670117|ref|YP_006922488.1|	-	6.4e-87	291.9	0.7	7.1e-87	291.8	0.7	1.0	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
DEAD_assoc	PF08494.11	gi|410670118|ref|YP_006922489.1|	-	3.4e-33	115.0	0.0	7.3e-33	114.0	0.0	1.5	1	0	0	1	1	1	1	DEAD/H	associated
DEAD	PF00270.29	gi|410670118|ref|YP_006922489.1|	-	3.4e-30	105.1	0.0	8e-30	103.9	0.0	1.6	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|410670118|ref|YP_006922489.1|	-	1.4e-21	76.9	0.0	9e-20	71.1	0.0	2.7	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|410670118|ref|YP_006922489.1|	-	2.3e-07	30.9	0.0	4.1e-07	30.2	0.0	1.3	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
SNF2_N	PF00176.23	gi|410670118|ref|YP_006922489.1|	-	0.013	14.2	0.0	0.023	13.4	0.0	1.3	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
Transketolase_C	PF02780.20	gi|410670118|ref|YP_006922489.1|	-	0.017	15.0	0.1	0.16	11.9	0.0	2.5	2	0	0	2	2	2	0	Transketolase,	C-terminal	domain
T4SS-DNA_transf	PF02534.14	gi|410670118|ref|YP_006922489.1|	-	0.11	11.3	0.0	0.2	10.4	0.0	1.3	1	0	0	1	1	1	0	Type	IV	secretory	system	Conjugative	DNA	transfer
PucR	PF07905.11	gi|410670118|ref|YP_006922489.1|	-	0.12	12.7	0.0	0.74	10.1	0.0	2.4	2	0	0	2	2	2	0	Purine	catabolism	regulatory	protein-like	family
AAA_25	PF13481.6	gi|410670118|ref|YP_006922489.1|	-	0.13	11.9	0.0	0.48	10.0	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
Metallophos	PF00149.28	gi|410670119|ref|YP_006922490.1|	-	7.5e-07	29.9	0.2	9.8e-07	29.5	0.2	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|410670119|ref|YP_006922490.1|	-	0.00023	21.4	0.0	0.00031	21.0	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
DNA_pol_E_B	PF04042.16	gi|410670119|ref|YP_006922490.1|	-	0.028	13.8	0.0	0.19	11.1	0.0	2.0	1	1	0	1	1	1	0	DNA	polymerase	alpha/epsilon	subunit	B
PspB	PF06667.12	gi|410670120|ref|YP_006922491.1|	-	0.0098	15.9	0.4	0.031	14.3	0.4	1.8	1	1	0	1	1	1	1	Phage	shock	protein	B
Tetraspanin	PF00335.20	gi|410670120|ref|YP_006922491.1|	-	0.028	14.2	3.6	0.21	11.3	3.6	1.8	1	1	0	1	1	1	0	Tetraspanin	family
DUF1422	PF07226.11	gi|410670120|ref|YP_006922491.1|	-	0.036	14.1	2.4	0.049	13.6	2.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1422)
Trimer_CC	PF08954.11	gi|410670120|ref|YP_006922491.1|	-	0.083	12.5	0.4	0.12	12.0	0.4	1.2	1	0	0	1	1	1	0	Trimerisation	motif
DivIC	PF04977.15	gi|410670120|ref|YP_006922491.1|	-	0.34	10.7	3.2	5	7.0	2.1	2.6	2	1	0	2	2	2	0	Septum	formation	initiator
DS	PF01916.17	gi|410670121|ref|YP_006922492.1|	-	9.3e-100	333.6	0.1	1.1e-99	333.4	0.1	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
OMPdecase	PF00215.24	gi|410670122|ref|YP_006922493.1|	-	8e-41	140.1	0.2	1e-40	139.7	0.2	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
PcrB	PF01884.17	gi|410670122|ref|YP_006922493.1|	-	0.00013	21.5	0.3	0.42	10.0	0.2	2.3	2	0	0	2	2	2	2	PcrB	family
FPP	PF05911.11	gi|410670123|ref|YP_006922494.1|	-	0.0026	16.1	12.2	0.0026	16.1	12.2	4.0	1	1	3	4	4	4	1	Filament-like	plant	protein,	long	coiled-coil
BRX_N	PF13713.6	gi|410670123|ref|YP_006922494.1|	-	0.082	12.7	1.0	3	7.7	0.2	3.0	2	0	0	2	2	2	0	Transcription	factor	BRX	N-terminal	domain
Tox-REase-5	PF15648.6	gi|410670123|ref|YP_006922494.1|	-	0.13	12.8	0.3	0.13	12.8	0.3	3.0	3	1	0	3	3	3	0	Restriction	endonuclease	fold	toxin	5
NPV_P10	PF05531.12	gi|410670123|ref|YP_006922494.1|	-	0.55	10.7	15.3	1	9.9	0.3	6.3	4	2	3	7	7	7	0	Nucleopolyhedrovirus	P10	protein
Atg14	PF10186.9	gi|410670123|ref|YP_006922494.1|	-	0.96	8.5	56.3	0.11	11.5	11.5	4.3	1	1	2	4	4	4	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Nudix_hydro	PF18290.1	gi|410670123|ref|YP_006922494.1|	-	3.1	7.9	6.4	1.1	9.3	0.4	3.2	4	0	0	4	4	4	0	Nudix	hydrolase	domain
MreB_Mbl	PF06723.13	gi|410670124|ref|YP_006922495.1|	-	7e-18	64.5	0.0	1.3e-17	63.6	0.0	1.3	1	1	0	1	1	1	1	MreB/Mbl	protein
Actin	PF00022.19	gi|410670124|ref|YP_006922495.1|	-	9.1e-08	31.1	0.0	0.0032	16.1	0.0	2.1	1	1	1	2	2	2	2	Actin
FtsA	PF14450.6	gi|410670124|ref|YP_006922495.1|	-	1.7e-06	28.4	0.2	2.2e-05	24.8	0.0	2.2	2	0	0	2	2	2	1	Cell	division	protein	FtsA
BcrAD_BadFG	PF01869.20	gi|410670124|ref|YP_006922495.1|	-	0.015	14.8	0.2	0.19	11.2	0.0	2.4	2	1	0	2	2	2	0	BadF/BadG/BcrA/BcrD	ATPase	family
DUF4225	PF13988.6	gi|410670124|ref|YP_006922495.1|	-	0.11	12.0	0.0	2.6	7.6	0.0	2.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4225)
Ppx-GppA	PF02541.16	gi|410670125|ref|YP_006922496.1|	-	1.9e-36	126.0	0.0	4.2e-36	124.8	0.0	1.5	1	1	0	1	1	1	1	Ppx/GppA	phosphatase	family
EutA	PF06277.11	gi|410670125|ref|YP_006922496.1|	-	0.00028	19.9	0.1	0.00037	19.5	0.1	1.1	1	0	0	1	1	1	1	Ethanolamine	utilisation	protein	EutA
FtsA	PF14450.6	gi|410670125|ref|YP_006922496.1|	-	0.024	15.1	0.2	0.67	10.4	0.0	2.7	3	0	0	3	3	3	0	Cell	division	protein	FtsA
PP_kinase_C	PF13090.6	gi|410670126|ref|YP_006922497.1|	-	5.8e-70	234.2	1.3	5.8e-70	234.2	1.3	2.1	2	0	0	2	2	2	1	Polyphosphate	kinase	C-terminal	domain	2
PP_kinase_C_1	PF17941.1	gi|410670126|ref|YP_006922497.1|	-	3.6e-68	228.3	1.2	1.1e-67	226.8	0.6	2.1	2	0	0	2	2	2	1	Polyphosphate	kinase	C-terminal	domain	1
PP_kinase	PF02503.17	gi|410670126|ref|YP_006922497.1|	-	1.8e-50	171.4	0.3	3.6e-50	170.4	0.3	1.5	1	0	0	1	1	1	1	Polyphosphate	kinase	middle	domain
PP_kinase_N	PF13089.6	gi|410670126|ref|YP_006922497.1|	-	5.7e-35	119.9	0.0	1.9e-34	118.2	0.0	2.0	1	0	0	1	1	1	1	Polyphosphate	kinase	N-terminal	domain
PLDc_2	PF13091.6	gi|410670126|ref|YP_006922497.1|	-	7.8e-14	51.7	1.4	4.6e-06	26.5	0.2	3.2	3	1	0	3	3	3	2	PLD-like	domain
Pyr_redox	PF00070.27	gi|410670126|ref|YP_006922497.1|	-	0.0092	16.5	0.6	2.7	8.6	0.0	3.6	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
CheR	PF01739.18	gi|410670128|ref|YP_006922499.1|	-	1.4e-39	135.7	0.0	1.6e-39	135.4	0.0	1.1	1	0	0	1	1	1	1	CheR	methyltransferase,	SAM	binding	domain
Methyltransf_25	PF13649.6	gi|410670128|ref|YP_006922499.1|	-	0.063	14.0	0.0	0.33	11.7	0.0	2.0	2	0	0	2	2	2	0	Methyltransferase	domain
CheW	PF01584.19	gi|410670129|ref|YP_006922500.1|	-	9.2e-40	135.5	4.9	1.1e-39	135.2	4.9	1.1	1	0	0	1	1	1	1	CheW-like	domain
MCPsignal	PF00015.21	gi|410670130|ref|YP_006922501.1|	-	2.6e-47	160.8	24.8	2.6e-47	160.8	24.8	6.0	3	2	4	8	8	8	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
TMP_2	PF06791.13	gi|410670130|ref|YP_006922501.1|	-	1.3e-05	24.9	24.8	0.0036	17.0	13.0	3.5	3	0	0	3	3	3	2	Prophage	tail	length	tape	measure	protein
HAMP	PF00672.25	gi|410670130|ref|YP_006922501.1|	-	0.00069	19.9	14.1	14	6.1	0.0	8.9	9	1	0	9	9	7	0	HAMP	domain
Syntaxin_2	PF14523.6	gi|410670130|ref|YP_006922501.1|	-	0.0036	17.6	12.8	5.8	7.3	1.6	7.3	3	1	4	8	8	8	1	Syntaxin-like	protein
HAMP_N3	PF18575.1	gi|410670130|ref|YP_006922501.1|	-	0.0073	15.9	0.0	0.81	9.3	0.0	4.0	3	0	0	3	3	3	1	HAMP	N-terminal	domain	3
DUF3158	PF11358.8	gi|410670130|ref|YP_006922501.1|	-	0.082	12.7	1.6	0.64	9.8	0.0	3.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3158)
BCDHK_Adom3	PF10436.9	gi|410670130|ref|YP_006922501.1|	-	0.11	12.3	1.5	0.97	9.3	0.4	3.0	2	1	0	2	2	2	0	Mitochondrial	branched-chain	alpha-ketoacid	dehydrogenase	kinase
DUF1664	PF07889.12	gi|410670130|ref|YP_006922501.1|	-	0.14	12.2	29.6	0.06	13.4	4.1	6.4	5	2	2	7	7	7	0	Protein	of	unknown	function	(DUF1664)
PHA_synth_III_E	PF09712.10	gi|410670130|ref|YP_006922501.1|	-	0.8	8.7	7.7	0.43	9.6	1.7	2.9	2	0	0	2	2	2	0	Poly(R)-hydroxyalkanoic	acid	synthase	subunit	(PHA_synth_III_E)
Baculo_F	PF12259.8	gi|410670130|ref|YP_006922501.1|	-	1	7.8	10.9	0.024	13.2	3.5	1.8	2	0	0	2	2	2	0	Baculovirus	F	protein
IFT46_B_C	PF12317.8	gi|410670130|ref|YP_006922501.1|	-	1.2	8.8	11.2	5.5	6.7	0.7	3.1	2	1	0	2	2	2	0	Intraflagellar	transport	complex	B	protein	46	C	terminal
TMPIT	PF07851.13	gi|410670130|ref|YP_006922501.1|	-	2.6	7.2	12.2	10	5.3	2.4	3.4	3	0	0	3	3	3	0	TMPIT-like	protein
Spc7	PF08317.11	gi|410670130|ref|YP_006922501.1|	-	2.7	6.8	15.7	3.9	6.3	6.0	2.8	2	0	0	2	2	2	0	Spc7	kinetochore	protein
PhageMin_Tail	PF10145.9	gi|410670130|ref|YP_006922501.1|	-	2.9	7.7	48.7	0.18	11.7	11.0	4.3	3	2	0	3	3	3	0	Phage-related	minor	tail	protein
TACC_C	PF05010.14	gi|410670130|ref|YP_006922501.1|	-	3	7.6	15.3	5.3	6.8	4.1	3.1	2	1	0	2	2	2	0	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
GIDA_assoc	PF13932.6	gi|410670130|ref|YP_006922501.1|	-	3.6	7.7	8.3	29	4.8	0.0	3.7	3	0	0	3	3	3	0	GidA	associated	domain
ArsR	PF09824.9	gi|410670130|ref|YP_006922501.1|	-	4	7.0	9.8	74	2.9	0.4	4.8	4	1	1	5	5	5	0	ArsR	transcriptional	regulator
KxDL	PF10241.9	gi|410670130|ref|YP_006922501.1|	-	7.6	6.9	7.2	14	6.0	0.4	4.4	4	1	0	4	4	4	0	Uncharacterized	conserved	protein
Terpene_synth_C	PF03936.16	gi|410670130|ref|YP_006922501.1|	-	7.7	5.8	8.7	0.6	9.4	2.0	2.3	2	0	0	2	2	2	0	Terpene	synthase	family,	metal	binding	domain
Tweety	PF04906.13	gi|410670130|ref|YP_006922501.1|	-	9.4	4.8	12.4	1.1	7.9	3.1	2.5	2	0	0	2	2	2	0	Tweety
PYC_OADA	PF02436.18	gi|410670132|ref|YP_006922503.1|	-	7e-59	198.9	0.3	1.3e-58	198.0	0.3	1.4	1	0	0	1	1	1	1	Conserved	carboxylase	domain
HMGL-like	PF00682.19	gi|410670132|ref|YP_006922503.1|	-	1.8e-44	152.3	0.0	2.3e-44	152.0	0.0	1.1	1	0	0	1	1	1	1	HMGL-like
Biotin_lipoyl	PF00364.22	gi|410670132|ref|YP_006922503.1|	-	5.1e-18	64.7	2.1	5.1e-18	64.7	2.1	2.5	3	0	0	3	3	3	1	Biotin-requiring	enzyme
Biotin_lipoyl_2	PF13533.6	gi|410670132|ref|YP_006922503.1|	-	0.00016	21.4	0.0	0.059	13.2	0.0	2.7	1	1	1	2	2	2	2	Biotin-lipoyl	like
HlyD_D23	PF16576.5	gi|410670132|ref|YP_006922503.1|	-	0.012	14.9	0.1	0.97	8.6	0.0	2.4	1	1	1	2	2	2	0	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
RnfC_N	PF13375.6	gi|410670132|ref|YP_006922503.1|	-	0.015	15.3	1.5	0.064	13.2	1.0	2.3	2	0	0	2	2	2	0	RnfC	Barrel	sandwich	hybrid	domain
HlyD_3	PF13437.6	gi|410670132|ref|YP_006922503.1|	-	0.028	15.1	0.4	1.7	9.4	0.0	3.0	3	0	0	3	3	3	0	HlyD	family	secretion	protein
DUF561	PF04481.12	gi|410670132|ref|YP_006922503.1|	-	0.064	12.4	0.0	1.7	7.7	0.0	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF561)
GCV_H	PF01597.19	gi|410670132|ref|YP_006922503.1|	-	0.27	11.1	2.7	2.1	8.3	0.2	2.4	1	1	1	2	2	2	0	Glycine	cleavage	H-protein
CPSase_L_D2	PF02786.17	gi|410670133|ref|YP_006922504.1|	-	1e-80	270.2	1.0	1.9e-80	269.3	1.0	1.4	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Biotin_carb_N	PF00289.22	gi|410670133|ref|YP_006922504.1|	-	3.1e-46	156.4	0.1	8e-46	155.1	0.1	1.7	1	0	0	1	1	1	1	Biotin	carboxylase,	N-terminal	domain
Biotin_carb_C	PF02785.19	gi|410670133|ref|YP_006922504.1|	-	4.7e-43	145.7	0.0	1.1e-42	144.5	0.0	1.6	1	0	0	1	1	1	1	Biotin	carboxylase	C-terminal	domain
Dala_Dala_lig_C	PF07478.13	gi|410670133|ref|YP_006922504.1|	-	1.1e-13	51.2	0.1	3.6e-13	49.5	0.1	1.9	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
RimK	PF08443.11	gi|410670133|ref|YP_006922504.1|	-	4e-08	33.1	0.4	1.1e-07	31.6	0.1	1.9	2	1	0	2	2	2	1	RimK-like	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|410670133|ref|YP_006922504.1|	-	1.2e-06	28.7	0.1	2e-06	27.9	0.1	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp	PF02222.22	gi|410670133|ref|YP_006922504.1|	-	3.2e-06	26.8	0.2	7.6e-06	25.6	0.2	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|410670133|ref|YP_006922504.1|	-	0.0011	18.8	1.7	0.0033	17.2	0.6	2.3	2	1	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATPgrasp_Ter	PF15632.6	gi|410670133|ref|YP_006922504.1|	-	0.0026	17.5	0.0	0.0061	16.3	0.0	1.6	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_5	PF13549.6	gi|410670133|ref|YP_006922504.1|	-	0.005	16.3	0.1	0.011	15.2	0.1	1.6	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_4	PF13535.6	gi|410670133|ref|YP_006922504.1|	-	0.0078	15.8	0.0	0.016	14.8	0.0	1.6	1	1	0	1	1	1	1	ATP-grasp	domain
TMP-TENI	PF02581.17	gi|410670133|ref|YP_006922504.1|	-	0.0087	15.4	0.2	0.031	13.6	0.1	2.0	2	1	0	2	2	2	1	Thiamine	monophosphate	synthase
BPL_LplA_LipB	PF03099.19	gi|410670134|ref|YP_006922505.1|	-	5.1e-18	65.2	0.0	1.4e-17	63.8	0.0	1.7	2	0	0	2	2	2	1	Biotin/lipoate	A/B	protein	ligase	family
HTH_11	PF08279.12	gi|410670134|ref|YP_006922505.1|	-	7.9e-13	48.1	0.3	7.9e-13	48.1	0.3	2.1	3	0	0	3	3	3	1	HTH	domain
BPL_C	PF02237.17	gi|410670134|ref|YP_006922505.1|	-	1.4e-10	40.9	0.0	4e-10	39.4	0.0	1.8	1	0	0	1	1	1	1	Biotin	protein	ligase	C	terminal	domain
BPL_LplA_LipB_2	PF16917.5	gi|410670134|ref|YP_006922505.1|	-	5.6e-07	29.3	0.0	7.9e-07	28.8	0.0	1.2	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
HTH_24	PF13412.6	gi|410670134|ref|YP_006922505.1|	-	8.4e-05	22.1	0.0	0.00021	20.8	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Put_DNA-bind_N	PF06971.13	gi|410670134|ref|YP_006922505.1|	-	0.0072	16.3	0.2	0.19	11.8	0.0	3.0	2	1	1	3	3	3	1	Putative	DNA-binding	protein	N-terminus
HTH_23	PF13384.6	gi|410670134|ref|YP_006922505.1|	-	0.028	14.2	0.1	0.071	12.9	0.1	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
PAP_fibrillin	PF04755.12	gi|410670134|ref|YP_006922505.1|	-	0.091	12.7	0.0	0.4	10.6	0.0	1.9	2	0	0	2	2	2	0	PAP_fibrillin
S-layer	PF07752.11	gi|410670135|ref|YP_006922506.1|	-	1.6e-07	30.7	0.0	2.1e-07	30.2	0.0	1.1	1	0	0	1	1	1	1	S-layer	protein
NdhO	PF11910.8	gi|410670135|ref|YP_006922506.1|	-	0.2	11.9	0.2	0.83	9.9	0.0	2.0	2	1	0	2	2	2	0	Cyanobacterial	and	plant	NDH-1	subunit	O
DUF3450	PF11932.8	gi|410670136|ref|YP_006922507.1|	-	8.3e-06	25.3	10.8	0.00037	19.9	1.0	3.1	1	1	2	3	3	3	2	Protein	of	unknown	function	(DUF3450)
MscS_porin	PF12795.7	gi|410670136|ref|YP_006922507.1|	-	2.1e-05	24.2	11.5	0.014	15.0	1.5	2.4	2	0	0	2	2	2	2	Mechanosensitive	ion	channel	porin	domain
Spc7	PF08317.11	gi|410670136|ref|YP_006922507.1|	-	2.7e-05	23.2	5.5	2.7e-05	23.2	5.5	2.3	2	1	0	2	2	2	1	Spc7	kinetochore	protein
Laminin_I	PF06008.14	gi|410670136|ref|YP_006922507.1|	-	0.0022	17.8	14.0	0.011	15.5	4.2	2.7	2	1	0	2	2	2	1	Laminin	Domain	I
CENP-F_leu_zip	PF10473.9	gi|410670136|ref|YP_006922507.1|	-	0.0085	16.1	28.6	0.013	15.6	11.0	3.3	2	1	0	3	3	3	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF2935	PF11155.8	gi|410670136|ref|YP_006922507.1|	-	0.012	15.9	0.3	1.2	9.5	0.3	2.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF2935)
DUF4200	PF13863.6	gi|410670136|ref|YP_006922507.1|	-	0.018	15.5	7.3	0.018	15.5	7.3	4.0	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4200)
Sec8_exocyst	PF04048.14	gi|410670136|ref|YP_006922507.1|	-	0.028	14.3	9.3	1.3	8.9	1.1	3.3	2	1	1	3	3	3	0	Sec8	exocyst	complex	component	specific	domain
Atg14	PF10186.9	gi|410670136|ref|YP_006922507.1|	-	0.048	12.7	24.7	0.79	8.8	2.7	2.6	1	1	0	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
COG2	PF06148.11	gi|410670136|ref|YP_006922507.1|	-	0.049	13.7	10.2	0.11	12.6	1.8	3.4	2	2	1	3	3	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF4407	PF14362.6	gi|410670136|ref|YP_006922507.1|	-	0.072	12.4	13.3	0.02	14.3	5.3	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
Laminin_II	PF06009.12	gi|410670136|ref|YP_006922507.1|	-	0.074	13.1	13.6	0.45	10.5	6.6	3.1	2	1	1	3	3	3	0	Laminin	Domain	II
Seryl_tRNA_N	PF02403.22	gi|410670136|ref|YP_006922507.1|	-	0.074	13.3	23.3	0.66	10.2	6.5	4.7	1	1	2	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
bZIP_1	PF00170.21	gi|410670136|ref|YP_006922507.1|	-	0.18	11.9	15.9	4.7	7.4	0.1	4.8	5	0	0	5	5	5	0	bZIP	transcription	factor
HIP1_clath_bdg	PF16515.5	gi|410670136|ref|YP_006922507.1|	-	0.21	12.2	18.8	0.22	12.1	2.5	4.1	3	1	1	4	4	4	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
Fzo_mitofusin	PF04799.13	gi|410670136|ref|YP_006922507.1|	-	0.22	11.1	10.2	5.8	6.4	2.2	3.5	2	2	1	3	3	3	0	fzo-like	conserved	region
V_ATPase_I	PF01496.19	gi|410670136|ref|YP_006922507.1|	-	0.24	9.3	8.1	0.27	9.1	8.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
DUF2968	PF11180.8	gi|410670136|ref|YP_006922507.1|	-	0.27	10.8	6.7	4.9	6.7	0.2	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2968)
TPR_MLP1_2	PF07926.12	gi|410670136|ref|YP_006922507.1|	-	0.28	11.3	23.7	0.16	12.0	10.1	3.5	2	2	1	3	3	3	0	TPR/MLP1/MLP2-like	protein
DUF1664	PF07889.12	gi|410670136|ref|YP_006922507.1|	-	0.37	10.9	13.3	3.8	7.6	6.7	3.4	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Ribosomal_L29	PF00831.23	gi|410670136|ref|YP_006922507.1|	-	0.37	10.8	5.6	0.29	11.1	1.3	3.2	3	0	0	3	3	2	0	Ribosomal	L29	protein
BLOC1_2	PF10046.9	gi|410670136|ref|YP_006922507.1|	-	1	9.7	11.5	6.4	7.1	0.4	3.9	3	1	2	5	5	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF1771	PF08590.10	gi|410670136|ref|YP_006922507.1|	-	1	9.8	7.8	0.27	11.6	0.8	3.2	2	2	0	2	2	2	0	Domain	of	unknown	function	(DUF1771)
DUF5082	PF16888.5	gi|410670136|ref|YP_006922507.1|	-	1.2	9.4	15.4	0.21	11.9	1.5	3.6	2	2	1	3	3	3	0	Domain	of	unknown	function	(DUF5082)
ATG16	PF08614.11	gi|410670136|ref|YP_006922507.1|	-	1.3	9.2	19.2	0.86	9.8	10.1	2.8	2	2	0	2	2	2	0	Autophagy	protein	16	(ATG16)
Sec34	PF04136.15	gi|410670136|ref|YP_006922507.1|	-	1.3	8.8	8.6	10	6.0	0.9	3.2	2	1	1	3	3	3	0	Sec34-like	family
DUF948	PF06103.11	gi|410670136|ref|YP_006922507.1|	-	1.4	9.2	3.7	6.2	7.2	0.8	3.1	2	2	1	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
5_nucleotid	PF05761.14	gi|410670136|ref|YP_006922507.1|	-	1.9	7.3	7.9	0.32	9.9	2.5	2.0	1	1	1	2	2	2	0	5'	nucleotidase	family
YlqD	PF11068.8	gi|410670136|ref|YP_006922507.1|	-	2.1	8.7	12.2	0.82	10.1	3.7	3.0	2	2	0	2	2	2	0	YlqD	protein
Fez1	PF06818.15	gi|410670136|ref|YP_006922507.1|	-	2.7	8.4	20.7	6.7	7.1	9.9	2.6	1	1	0	2	2	2	0	Fez1
ZapB	PF06005.12	gi|410670136|ref|YP_006922507.1|	-	2.8	8.4	20.7	0.5	10.8	3.1	4.1	3	1	0	3	3	2	0	Cell	division	protein	ZapB
DUF724	PF05266.14	gi|410670136|ref|YP_006922507.1|	-	2.9	7.7	21.9	0.18	11.6	8.6	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF724)
FlxA	PF14282.6	gi|410670136|ref|YP_006922507.1|	-	3.2	7.8	12.5	3	7.9	2.3	3.5	3	1	1	4	4	3	0	FlxA-like	protein
SlyX	PF04102.12	gi|410670136|ref|YP_006922507.1|	-	3.4	8.4	8.3	3.3	8.4	0.5	3.4	2	1	1	3	3	3	0	SlyX
Syntaxin-6_N	PF09177.11	gi|410670136|ref|YP_006922507.1|	-	3.5	8.2	15.4	0.43	11.2	3.3	3.4	2	2	1	3	3	3	0	Syntaxin	6,	N-terminal
DUF1515	PF07439.11	gi|410670136|ref|YP_006922507.1|	-	3.7	7.6	7.3	3.4	7.7	2.9	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1515)
HAUS5	PF14817.6	gi|410670136|ref|YP_006922507.1|	-	5.1	5.7	15.8	0.25	10.1	8.9	2.0	1	1	0	2	2	2	0	HAUS	augmin-like	complex	subunit	5
CHIP_TPR_N	PF18391.1	gi|410670136|ref|YP_006922507.1|	-	5.1	7.9	19.8	0.18	12.6	0.5	4.2	3	1	0	3	3	2	0	CHIP	N-terminal	tetratricopeptide	repeat	domain
ADIP	PF11559.8	gi|410670136|ref|YP_006922507.1|	-	6.5	6.8	21.9	9.1	6.3	12.2	2.6	2	1	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Exonuc_VII_L	PF02601.15	gi|410670136|ref|YP_006922507.1|	-	7.2	6.1	13.7	0.71	9.4	6.4	2.0	2	0	0	2	2	2	0	Exonuclease	VII,	large	subunit
Prominin	PF05478.11	gi|410670136|ref|YP_006922507.1|	-	7.3	4.4	6.7	1.7	6.5	3.5	1.5	2	0	0	2	2	2	0	Prominin
Yuri_gagarin	PF15934.5	gi|410670136|ref|YP_006922507.1|	-	7.4	6.3	15.9	1.6	8.5	6.0	2.2	2	0	0	2	2	2	0	Yuri	gagarin
Vps5	PF09325.10	gi|410670137|ref|YP_006922508.1|	-	0.00046	19.8	9.5	0.057	13.0	2.2	2.7	1	1	1	2	2	2	2	Vps5	C	terminal	like
NPV_P10	PF05531.12	gi|410670137|ref|YP_006922508.1|	-	0.023	15.2	0.2	10	6.7	0.0	3.2	3	1	0	3	3	3	0	Nucleopolyhedrovirus	P10	protein
DUF724	PF05266.14	gi|410670137|ref|YP_006922508.1|	-	0.31	10.9	8.6	4.7	7.0	4.8	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF724)
V_ATPase_I	PF01496.19	gi|410670137|ref|YP_006922508.1|	-	0.88	7.4	5.2	0.44	8.4	2.8	1.5	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
TMF_DNA_bd	PF12329.8	gi|410670137|ref|YP_006922508.1|	-	3.5	7.7	9.2	2	8.4	0.4	2.9	3	0	0	3	3	3	0	TATA	element	modulatory	factor	1	DNA	binding
DUF424	PF04242.13	gi|410670138|ref|YP_006922509.1|	-	2.3e-26	91.9	0.4	2.8e-26	91.6	0.4	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF424)
MCM	PF00493.23	gi|410670139|ref|YP_006922510.1|	-	2.8e-96	320.9	0.0	4.1e-96	320.4	0.0	1.2	1	0	0	1	1	1	1	MCM	P-loop	domain
MCM_OB	PF17207.3	gi|410670139|ref|YP_006922510.1|	-	1.8e-37	128.0	0.2	3e-37	127.3	0.2	1.4	1	0	0	1	1	1	1	MCM	OB	domain
MCM_lid	PF17855.1	gi|410670139|ref|YP_006922510.1|	-	2.1e-26	92.1	1.2	6e-26	90.7	1.2	1.8	1	0	0	1	1	1	1	MCM	AAA-lid	domain
MCM_N	PF14551.6	gi|410670139|ref|YP_006922510.1|	-	3.8e-11	43.5	1.3	1.5e-09	38.3	0.3	2.8	2	0	0	2	2	2	1	MCM	N-terminal	domain
Mg_chelatase	PF01078.21	gi|410670139|ref|YP_006922510.1|	-	6.3e-07	29.0	0.1	0.00011	21.7	0.0	2.3	1	1	1	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_5	PF07728.14	gi|410670139|ref|YP_006922510.1|	-	6.8e-06	26.1	0.0	3.2e-05	24.0	0.0	2.2	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_3	PF07726.11	gi|410670139|ref|YP_006922510.1|	-	0.003	17.4	0.1	0.015	15.2	0.0	2.2	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF4072	PF13284.6	gi|410670139|ref|YP_006922510.1|	-	0.0032	17.9	0.6	0.015	15.7	0.6	2.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4072)
AAA	PF00004.29	gi|410670139|ref|YP_006922510.1|	-	0.014	15.8	0.1	0.079	13.4	0.0	2.4	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|410670139|ref|YP_006922510.1|	-	0.14	11.9	0.1	0.77	9.4	0.1	2.1	1	1	0	1	1	1	0	Sigma-54	interaction	domain
SpoU_methylase	PF00588.19	gi|410670140|ref|YP_006922511.1|	-	5e-32	111.0	0.0	6.6e-32	110.6	0.0	1.1	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
Methyltrn_RNA_4	PF09936.9	gi|410670140|ref|YP_006922511.1|	-	0.0063	16.4	0.0	0.045	13.6	0.0	2.1	1	1	0	1	1	1	1	SAM-dependent	RNA	methyltransferase
Nitrate_red_gam	PF02665.14	gi|410670141|ref|YP_006922512.1|	-	0.00015	21.4	17.6	0.028	14.0	14.8	2.8	1	1	1	2	2	2	1	Nitrate	reductase	gamma	subunit
CCG	PF02754.16	gi|410670142|ref|YP_006922513.1|	-	7.4e-33	112.6	8.1	1.7e-17	63.4	0.0	3.0	3	0	0	3	3	3	2	Cysteine-rich	domain
Fer4_8	PF13183.6	gi|410670142|ref|YP_006922513.1|	-	2e-11	44.1	8.7	5.6e-11	42.7	3.0	3.2	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410670142|ref|YP_006922513.1|	-	3.9e-06	27.3	5.2	3.9e-06	27.3	5.2	2.9	3	1	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410670142|ref|YP_006922513.1|	-	9.3e-06	25.7	11.1	9.3e-06	25.7	11.1	3.5	3	1	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410670142|ref|YP_006922513.1|	-	7.4e-05	23.6	5.3	7.4e-05	23.6	5.3	2.8	2	1	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_7	PF12838.7	gi|410670142|ref|YP_006922513.1|	-	8.4e-05	23.1	14.3	0.00023	21.7	11.7	2.9	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410670142|ref|YP_006922513.1|	-	0.00023	21.3	15.3	0.0018	18.4	12.0	3.6	3	1	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410670142|ref|YP_006922513.1|	-	0.0022	18.1	10.0	0.28	11.3	0.5	3.4	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410670142|ref|YP_006922513.1|	-	0.005	16.9	20.3	0.012	15.7	2.0	3.4	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|410670142|ref|YP_006922513.1|	-	0.0073	17.1	7.4	2.2	9.2	0.1	3.6	3	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410670142|ref|YP_006922513.1|	-	0.049	13.7	18.9	0.11	12.6	1.8	3.3	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|410670142|ref|YP_006922513.1|	-	0.12	12.5	9.6	1.3	9.2	0.5	2.7	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
zf-FLZ	PF04570.14	gi|410670142|ref|YP_006922513.1|	-	1.4	8.5	5.8	0.46	10.0	0.1	2.9	3	0	0	3	3	3	0	zinc-finger	of	the	FCS-type,	C2-C2
Fer4_4	PF12800.7	gi|410670142|ref|YP_006922513.1|	-	4.4	8.1	24.3	0.099	13.2	2.4	3.7	4	0	0	4	4	4	0	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|410670142|ref|YP_006922513.1|	-	6.1	6.8	26.8	0.039	13.8	2.8	3.1	4	0	0	4	4	3	0	4Fe-4S	binding	domain
DUF116	PF01976.17	gi|410670143|ref|YP_006922514.1|	-	1.4e-45	154.6	7.2	1.7e-45	154.3	7.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF116
DUF116	PF01976.17	gi|410670144|ref|YP_006922515.1|	-	1.6e-41	141.4	0.1	2.1e-41	141.0	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF116
FixS	PF03597.15	gi|410670144|ref|YP_006922515.1|	-	0.07	12.9	0.3	0.12	12.0	0.3	1.5	1	0	0	1	1	1	0	Cytochrome	oxidase	maturation	protein	cbb3-type
FAD_binding_3	PF01494.19	gi|410670145|ref|YP_006922516.1|	-	1.2e-10	41.2	0.3	8.1e-06	25.3	0.0	2.3	2	1	0	2	2	2	2	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|410670145|ref|YP_006922516.1|	-	6e-09	35.8	0.0	8.6e-09	35.2	0.0	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Trp_halogenase	PF04820.14	gi|410670145|ref|YP_006922516.1|	-	1.5e-08	33.9	0.1	0.00069	18.6	0.0	2.7	1	1	1	2	2	2	2	Tryptophan	halogenase
Pyr_redox_3	PF13738.6	gi|410670145|ref|YP_006922516.1|	-	2.2e-08	33.7	3.4	2.4e-07	30.3	3.4	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|410670145|ref|YP_006922516.1|	-	2.4e-08	33.6	0.0	4e-08	32.8	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|410670145|ref|YP_006922516.1|	-	1.2e-06	27.9	0.1	2.1e-06	27.1	0.1	1.5	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.12	gi|410670145|ref|YP_006922516.1|	-	1.3e-06	27.7	0.0	0.031	13.3	0.0	2.1	2	0	0	2	2	2	2	Lycopene	cyclase	protein
HI0933_like	PF03486.14	gi|410670145|ref|YP_006922516.1|	-	1.2e-05	24.2	0.3	0.0043	15.8	0.1	2.2	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|410670145|ref|YP_006922516.1|	-	0.00046	19.4	0.4	0.0044	16.2	0.0	2.4	3	0	0	3	3	3	1	FAD	binding	domain
Thi4	PF01946.17	gi|410670145|ref|YP_006922516.1|	-	0.00087	18.6	0.0	0.0017	17.6	0.0	1.5	1	0	0	1	1	1	1	Thi4	family
DAO	PF01266.24	gi|410670145|ref|YP_006922516.1|	-	0.0057	16.3	0.1	1.3	8.5	0.0	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|410670145|ref|YP_006922516.1|	-	0.028	14.7	0.1	0.081	13.2	0.1	1.8	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
PhoPQ_related	PF10142.9	gi|410670145|ref|YP_006922516.1|	-	0.16	10.6	0.0	0.22	10.1	0.0	1.1	1	0	0	1	1	1	0	PhoPQ-activated	pathogenicity-related	protein
DUF4131	PF13567.6	gi|410670146|ref|YP_006922517.1|	-	0.025	14.2	0.2	0.03	14.0	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
Insulin_TMD	PF17870.1	gi|410670146|ref|YP_006922517.1|	-	0.054	13.6	0.2	1.6	8.9	0.0	2.1	2	0	0	2	2	2	0	Insulin	receptor	trans-membrane	segment
Adipogenin	PF15202.6	gi|410670146|ref|YP_006922517.1|	-	0.1	12.6	0.3	0.16	12.0	0.0	1.6	1	1	1	2	2	2	0	Adipogenin
FeoB_associated	PF12669.7	gi|410670146|ref|YP_006922517.1|	-	2.1	8.8	4.0	3	8.3	0.1	2.1	2	0	0	2	2	2	0	FeoB-associated	Cys-rich	membrane	protein
DUF1059	PF06348.11	gi|410670147|ref|YP_006922518.1|	-	0.0059	16.8	0.1	0.0077	16.4	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1059)
Imm9	PF15587.6	gi|410670147|ref|YP_006922518.1|	-	0.032	13.9	0.0	0.033	13.8	0.0	1.1	1	0	0	1	1	1	0	Immunity	protein	9
DUF832	PF05734.11	gi|410670147|ref|YP_006922518.1|	-	0.048	13.1	0.0	0.057	12.9	0.0	1.0	1	0	0	1	1	1	0	Herpesvirus	protein	of	unknown	function	(DUF832)
UPF0016	PF01169.19	gi|410670148|ref|YP_006922519.1|	-	9.5e-42	141.2	16.4	6.3e-22	77.7	6.5	2.0	2	0	0	2	2	2	2	Uncharacterized	protein	family	UPF0016
TauE	PF01925.19	gi|410670148|ref|YP_006922519.1|	-	0.00014	21.6	12.6	0.02	14.5	1.3	2.2	2	0	0	2	2	2	2	Sulfite	exporter	TauE/SafE
TerC	PF03741.16	gi|410670148|ref|YP_006922519.1|	-	0.0023	17.6	10.3	0.0047	16.6	10.3	1.5	1	1	0	1	1	1	1	Integral	membrane	protein	TerC	family
MIG-14_Wnt-bd	PF06664.12	gi|410670148|ref|YP_006922519.1|	-	0.0052	16.1	5.1	1	8.5	2.6	2.1	2	0	0	2	2	2	2	Wnt-binding	factor	required	for	Wnt	secretion
DUF1761	PF08570.10	gi|410670148|ref|YP_006922519.1|	-	0.076	13.3	10.6	0.091	13.0	0.8	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1761)
MFS_1	PF07690.16	gi|410670148|ref|YP_006922519.1|	-	1.5	7.7	15.8	18	4.1	15.9	2.0	1	1	0	1	1	1	0	Major	Facilitator	Superfamily
PPDK_N	PF01326.19	gi|410670149|ref|YP_006922520.1|	-	9.4e-51	173.0	0.0	1.9e-50	172.0	0.0	1.5	2	0	0	2	2	2	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
F420_oxidored	PF03807.17	gi|410670150|ref|YP_006922521.1|	-	7.4e-19	68.1	1.2	1.3e-18	67.3	1.2	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
ApbA	PF02558.16	gi|410670150|ref|YP_006922521.1|	-	0.00032	20.4	0.3	0.0012	18.5	0.3	1.8	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
Semialdhyde_dh	PF01118.24	gi|410670150|ref|YP_006922521.1|	-	0.00045	20.6	0.1	0.00086	19.7	0.1	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|410670150|ref|YP_006922521.1|	-	0.0013	19.0	0.3	0.0031	17.8	0.3	1.7	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|410670150|ref|YP_006922521.1|	-	0.018	15.0	0.0	0.024	14.6	0.0	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
adh_short	PF00106.25	gi|410670150|ref|YP_006922521.1|	-	0.1	12.0	0.6	0.15	11.5	0.6	1.3	1	0	0	1	1	1	0	short	chain	dehydrogenase
Epimerase	PF01370.21	gi|410670150|ref|YP_006922521.1|	-	0.15	11.5	0.2	0.19	11.1	0.2	1.2	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
ELFV_dehydrog	PF00208.21	gi|410670151|ref|YP_006922522.1|	-	6e-72	242.3	2.4	6.3e-72	242.2	1.6	1.4	2	0	0	2	2	2	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|410670151|ref|YP_006922522.1|	-	1.4e-55	186.7	0.0	2.7e-55	185.8	0.0	1.5	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|410670151|ref|YP_006922522.1|	-	0.00079	18.8	0.2	0.0014	18.1	0.2	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
zf-NADH-PPase	PF09297.11	gi|410670152|ref|YP_006922523.1|	-	0.0073	15.9	0.8	0.014	15.1	0.0	1.8	2	0	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|410670152|ref|YP_006922523.1|	-	0.051	13.1	4.5	0.2	11.2	4.5	2.0	1	1	0	1	1	1	0	TFIIB	zinc-binding
DUF1289	PF06945.13	gi|410670152|ref|YP_006922523.1|	-	0.14	12.0	2.9	0.23	11.3	2.9	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1289)
zn-ribbon_14	PF16503.5	gi|410670152|ref|YP_006922523.1|	-	0.84	9.2	3.7	1.7	8.2	3.7	1.6	1	1	0	1	1	1	0	Zinc-ribbon
Dus	PF01207.17	gi|410670153|ref|YP_006922524.1|	-	2.4e-12	46.6	0.9	3.6e-12	46.0	0.9	1.2	1	0	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
His_biosynth	PF00977.21	gi|410670153|ref|YP_006922524.1|	-	7.9e-07	28.8	0.2	2.3e-06	27.2	0.1	1.7	1	1	1	2	2	2	1	Histidine	biosynthesis	protein
IMPDH	PF00478.25	gi|410670153|ref|YP_006922524.1|	-	8.2e-07	28.3	2.3	1.2e-06	27.8	2.3	1.2	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
Ribul_P_3_epim	PF00834.19	gi|410670153|ref|YP_006922524.1|	-	0.032	13.6	0.5	0.17	11.3	0.1	2.3	2	1	1	3	3	3	0	Ribulose-phosphate	3	epimerase	family
MinC_N	PF05209.13	gi|410670153|ref|YP_006922524.1|	-	0.15	12.0	0.0	0.81	9.7	0.1	2.2	3	0	0	3	3	3	0	Septum	formation	inhibitor	MinC,	N-terminal	domain
CitG	PF01874.16	gi|410670154|ref|YP_006922525.1|	-	1.1e-75	254.9	0.0	1.3e-75	254.7	0.0	1.0	1	0	0	1	1	1	1	ATP:dephospho-CoA	triphosphoribosyl	transferase
DUF447	PF04289.12	gi|410670155|ref|YP_006922526.1|	-	1.3e-52	178.1	0.0	1.5e-52	177.9	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF447)
PHP_C	PF13263.6	gi|410670156|ref|YP_006922527.1|	-	4.9e-19	67.8	0.0	1.5e-18	66.3	0.0	1.8	2	0	0	2	2	2	1	PHP-associated
PHP	PF02811.19	gi|410670156|ref|YP_006922527.1|	-	1.1e-08	35.6	0.0	1.7e-08	35.0	0.0	1.4	1	1	0	1	1	1	1	PHP	domain
GTP-bdg_N	PF13167.6	gi|410670157|ref|YP_006922528.1|	-	2.2e-25	89.1	0.1	4.6e-25	88.1	0.1	1.6	1	0	0	1	1	1	1	GTP-binding	GTPase	N-terminal
MMR_HSR1	PF01926.23	gi|410670157|ref|YP_006922528.1|	-	1.5e-21	76.6	0.0	3.4e-21	75.4	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP-bdg_M	PF16360.5	gi|410670157|ref|YP_006922528.1|	-	6e-14	52.4	0.7	6e-14	52.4	0.7	1.7	2	0	0	2	2	1	1	GTP-binding	GTPase	Middle	Region
RsgA_GTPase	PF03193.16	gi|410670157|ref|YP_006922528.1|	-	1.5e-07	31.5	0.7	0.0069	16.3	0.0	2.5	3	0	0	3	3	3	2	RsgA	GTPase
FeoB_N	PF02421.18	gi|410670157|ref|YP_006922528.1|	-	2.5e-07	30.3	0.5	4.9e-07	29.4	0.1	1.7	2	0	0	2	2	2	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.27	gi|410670157|ref|YP_006922528.1|	-	6.8e-05	22.5	0.1	0.025	14.1	0.1	2.4	1	1	1	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
Dynamin_N	PF00350.23	gi|410670157|ref|YP_006922528.1|	-	0.00017	21.7	0.0	0.00053	20.1	0.0	1.9	1	1	0	1	1	1	1	Dynamin	family
Arf	PF00025.21	gi|410670157|ref|YP_006922528.1|	-	0.0011	18.4	1.8	0.0016	18.0	0.3	2.0	2	1	0	2	2	2	1	ADP-ribosylation	factor	family
Septin	PF00735.18	gi|410670157|ref|YP_006922528.1|	-	0.0019	17.6	0.2	0.65	9.2	0.0	2.4	2	0	0	2	2	2	2	Septin
MMR_HSR1_Xtn	PF16897.5	gi|410670157|ref|YP_006922528.1|	-	0.0062	16.5	0.0	0.015	15.3	0.0	1.7	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
cobW	PF02492.19	gi|410670157|ref|YP_006922528.1|	-	0.012	15.2	2.2	0.56	9.8	0.2	2.5	2	1	1	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
SRPRB	PF09439.10	gi|410670157|ref|YP_006922528.1|	-	0.028	13.9	0.1	0.053	13.0	0.1	1.4	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
GBP	PF02263.19	gi|410670157|ref|YP_006922528.1|	-	0.066	12.5	0.1	6	6.0	0.0	2.4	2	0	0	2	2	2	0	Guanylate-binding	protein,	N-terminal	domain
PT-TG	PF14449.6	gi|410670157|ref|YP_006922528.1|	-	0.094	12.6	0.0	0.21	11.5	0.0	1.5	1	0	0	1	1	1	0	Pre-toxin	TG
AIG1	PF04548.16	gi|410670157|ref|YP_006922528.1|	-	0.1	11.9	0.1	0.21	10.9	0.1	1.5	1	0	0	1	1	1	0	AIG1	family
ABC_tran	PF00005.27	gi|410670157|ref|YP_006922528.1|	-	0.11	13.0	0.1	0.64	10.5	0.0	2.1	1	1	1	2	2	2	0	ABC	transporter
DUF2209	PF09974.9	gi|410670159|ref|YP_006922529.1|	-	3.5e-24	85.4	0.0	3.9e-24	85.3	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2209)
tRNA_int_endo	PF01974.17	gi|410670160|ref|YP_006922531.1|	-	9.1e-47	157.1	0.2	5.6e-23	80.8	0.1	2.3	2	0	0	2	2	2	2	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.14	gi|410670160|ref|YP_006922531.1|	-	4.8e-40	135.1	1.2	2.2e-19	68.9	0.0	2.4	2	0	0	2	2	2	2	tRNA	intron	endonuclease,	N-terminal	domain
Sen15	PF09631.10	gi|410670160|ref|YP_006922531.1|	-	0.028	14.7	0.0	0.094	13.0	0.0	1.8	2	0	0	2	2	2	0	Sen15	protein
CMD	PF02627.20	gi|410670161|ref|YP_006922532.1|	-	2.2e-11	43.6	0.3	2.6e-11	43.4	0.3	1.0	1	0	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
SinI	PF08671.10	gi|410670161|ref|YP_006922532.1|	-	0.1	12.4	0.7	0.17	11.7	0.7	1.4	1	0	0	1	1	1	0	Anti-repressor	SinI
MscL	PF01741.18	gi|410670162|ref|YP_006922533.1|	-	4.9e-20	72.0	7.2	5.4e-20	71.9	7.2	1.0	1	0	0	1	1	1	1	Large-conductance	mechanosensitive	channel,	MscL
Saf_2TM	PF18303.1	gi|410670162|ref|YP_006922533.1|	-	0.0095	15.5	2.0	0.0098	15.5	2.0	1.0	1	0	0	1	1	1	1	SAVED-fused	2TM	effector	domain
Ac110_PIF	PF07280.11	gi|410670162|ref|YP_006922533.1|	-	0.21	11.4	2.9	7.9	6.3	0.0	2.4	2	0	0	2	2	2	0	Per	os	infectivity	factor	AC110
TraL	PF07178.11	gi|410670162|ref|YP_006922533.1|	-	0.6	10.6	4.9	0.48	10.9	0.7	2.0	2	0	0	2	2	2	0	TraL	protein
GATase_3	PF07685.14	gi|410670163|ref|YP_006922534.1|	-	2.8e-40	138.0	0.1	4e-40	137.5	0.1	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
CbiA	PF01656.23	gi|410670163|ref|YP_006922534.1|	-	1.5e-16	60.6	0.0	2.7e-16	59.8	0.0	1.4	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.6	gi|410670163|ref|YP_006922534.1|	-	1.1e-13	51.5	0.9	2e-11	44.1	0.9	2.5	1	1	0	1	1	1	1	AAA	domain
MobB	PF03205.14	gi|410670163|ref|YP_006922534.1|	-	0.048	13.6	0.0	0.11	12.4	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Fer4_NifH	PF00142.18	gi|410670164|ref|YP_006922535.1|	-	3.8e-90	302.0	0.8	4.4e-90	301.8	0.8	1.0	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ParA	PF10609.9	gi|410670164|ref|YP_006922535.1|	-	1.3e-11	44.4	0.1	3.1e-11	43.2	0.1	1.6	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|410670164|ref|YP_006922535.1|	-	3.2e-09	36.9	0.0	5e-09	36.3	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|410670164|ref|YP_006922535.1|	-	7.8e-08	32.4	1.2	8e-08	32.4	0.1	1.6	2	0	0	2	2	2	1	AAA	domain
ArsA_ATPase	PF02374.15	gi|410670164|ref|YP_006922535.1|	-	2.2e-07	30.4	0.1	1.4e-06	27.7	0.1	2.1	2	0	0	2	2	2	1	Anion-transporting	ATPase
AAA_24	PF13479.6	gi|410670164|ref|YP_006922535.1|	-	4.6e-05	23.2	0.0	7.6e-05	22.5	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
MeaB	PF03308.16	gi|410670164|ref|YP_006922535.1|	-	0.00014	20.9	0.1	0.00021	20.4	0.1	1.2	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
MipZ	PF09140.11	gi|410670164|ref|YP_006922535.1|	-	0.002	17.5	0.3	0.015	14.6	0.0	2.2	2	0	0	2	2	2	1	ATPase	MipZ
SRP54	PF00448.22	gi|410670164|ref|YP_006922535.1|	-	0.0058	16.3	0.1	0.011	15.3	0.1	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_16	PF13191.6	gi|410670164|ref|YP_006922535.1|	-	0.029	14.7	0.0	0.059	13.7	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_25	PF13481.6	gi|410670164|ref|YP_006922535.1|	-	0.053	13.1	0.1	0.1	12.2	0.0	1.5	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|410670164|ref|YP_006922535.1|	-	0.057	12.9	0.0	0.1	12.1	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
ATP_bind_1	PF03029.17	gi|410670164|ref|YP_006922535.1|	-	0.16	11.7	0.5	1.1	9.0	0.5	2.0	1	1	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
DUF1611	PF07755.11	gi|410670164|ref|YP_006922535.1|	-	0.18	11.1	0.1	0.97	8.7	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
IstB_IS21	PF01695.17	gi|410670164|ref|YP_006922535.1|	-	0.2	11.4	0.1	0.34	10.6	0.1	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Oxidored_nitro	PF00148.19	gi|410670165|ref|YP_006922536.1|	-	1.9e-17	63.1	0.0	2.9e-17	62.5	0.0	1.3	1	0	0	1	1	1	1	Nitrogenase	component	1	type	Oxidoreductase
Mur_ligase_M	PF08245.12	gi|410670167|ref|YP_006922538.1|	-	5.6e-08	33.0	0.0	1e-07	32.2	0.0	1.4	1	0	0	1	1	1	1	Mur	ligase	middle	domain
HEM4	PF02602.15	gi|410670167|ref|YP_006922538.1|	-	0.013	14.9	0.0	0.026	13.9	0.0	1.5	1	0	0	1	1	1	0	Uroporphyrinogen-III	synthase	HemD
Peptidase_C23	PF05379.11	gi|410670167|ref|YP_006922538.1|	-	0.11	12.7	0.1	12	6.1	0.0	3.6	4	0	0	4	4	4	0	Carlavirus	endopeptidase
DUF2150	PF09920.9	gi|410670168|ref|YP_006922539.1|	-	2e-70	236.6	5.9	2.4e-70	236.3	5.9	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2150)
UPF0179	PF03684.13	gi|410670169|ref|YP_006922540.1|	-	2.5e-51	173.3	0.2	2.8e-51	173.1	0.2	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0179)
PADR1	PF08063.12	gi|410670169|ref|YP_006922540.1|	-	0.01	15.6	0.3	0.022	14.5	0.3	1.5	1	0	0	1	1	1	0	PADR1	(NUC008)	domain
Fe-ADH_2	PF13685.6	gi|410670170|ref|YP_006922541.1|	-	6.8e-70	235.6	4.3	8.3e-70	235.3	4.3	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.19	gi|410670170|ref|YP_006922541.1|	-	7.1e-21	74.4	3.6	1.5e-20	73.3	3.5	1.6	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.20	gi|410670170|ref|YP_006922541.1|	-	1.7e-08	34.0	0.6	3.4e-08	33.0	0.6	1.5	1	1	0	1	1	1	1	3-dehydroquinate	synthase
DUF2671	PF10877.8	gi|410670170|ref|YP_006922541.1|	-	0.1	12.4	0.9	0.29	11.0	0.9	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2671)
DUF63	PF01889.17	gi|410670171|ref|YP_006922542.1|	-	9.7e-107	357.2	19.0	1.1e-106	357.0	19.0	1.0	1	0	0	1	1	1	1	Membrane	protein	of	unknown	function	DUF63
PHO4	PF01384.20	gi|410670171|ref|YP_006922542.1|	-	0.6	9.1	3.9	0.82	8.7	3.9	1.2	1	0	0	1	1	1	0	Phosphate	transporter	family
SpoIIM	PF01944.17	gi|410670172|ref|YP_006922543.1|	-	1.6e-32	112.7	24.6	2e-32	112.4	24.6	1.1	1	0	0	1	1	1	1	Stage	II	sporulation	protein	M
Ninjurin	PF04923.12	gi|410670172|ref|YP_006922543.1|	-	0.21	11.5	0.1	0.21	11.5	0.1	2.6	1	1	2	3	3	3	0	Ninjurin
DUF2530	PF10745.9	gi|410670172|ref|YP_006922543.1|	-	2.7	8.3	0.0	2.7	8.3	0.0	3.2	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF2530)
DUF1297	PF06973.12	gi|410670173|ref|YP_006922544.1|	-	5.2e-77	257.6	0.0	6.9e-77	257.2	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1297)
DUF1246	PF06849.12	gi|410670173|ref|YP_006922544.1|	-	7.8e-46	155.0	0.0	1.3e-45	154.3	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1246)
ATPase	PF06745.13	gi|410670174|ref|YP_006922545.1|	-	7.7e-40	136.7	0.0	9.5e-40	136.4	0.0	1.0	1	0	0	1	1	1	1	KaiC
GvpD	PF07088.11	gi|410670174|ref|YP_006922545.1|	-	5.1e-07	28.7	0.0	0.0002	20.1	0.0	2.3	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
AAA_22	PF13401.6	gi|410670174|ref|YP_006922545.1|	-	1e-05	25.8	0.3	9.3e-05	22.7	0.3	2.1	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|410670174|ref|YP_006922545.1|	-	0.00011	22.0	0.0	0.00051	19.8	0.0	1.8	1	1	1	2	2	2	1	IstB-like	ATP	binding	protein
AAA_25	PF13481.6	gi|410670174|ref|YP_006922545.1|	-	0.00014	21.6	0.4	0.001	18.7	0.4	2.0	1	1	0	1	1	1	1	AAA	domain
DUF835	PF05763.12	gi|410670174|ref|YP_006922545.1|	-	0.00016	21.4	0.4	0.00029	20.6	0.4	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF835)
AAA_16	PF13191.6	gi|410670174|ref|YP_006922545.1|	-	0.00033	21.1	0.0	0.00075	19.9	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
RecA	PF00154.21	gi|410670174|ref|YP_006922545.1|	-	0.00034	20.2	0.0	0.00054	19.5	0.0	1.3	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
DUF2075	PF09848.9	gi|410670174|ref|YP_006922545.1|	-	0.0047	16.2	0.0	0.0052	16.1	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
Mg_chelatase	PF01078.21	gi|410670174|ref|YP_006922545.1|	-	0.0049	16.3	0.0	0.0071	15.8	0.0	1.3	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_24	PF13479.6	gi|410670174|ref|YP_006922545.1|	-	0.0063	16.3	0.0	0.013	15.3	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.15	gi|410670174|ref|YP_006922545.1|	-	0.0088	15.4	0.0	0.065	12.6	0.0	2.1	1	1	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
ResIII	PF04851.15	gi|410670174|ref|YP_006922545.1|	-	0.016	15.2	0.0	0.024	14.6	0.0	1.5	1	1	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
AAA_5	PF07728.14	gi|410670174|ref|YP_006922545.1|	-	0.034	14.2	0.0	0.054	13.5	0.0	1.5	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|410670174|ref|YP_006922545.1|	-	0.059	13.8	0.4	0.17	12.3	0.4	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad51	PF08423.11	gi|410670174|ref|YP_006922545.1|	-	0.065	12.5	0.0	0.11	11.8	0.0	1.3	1	0	0	1	1	1	0	Rad51
cobW	PF02492.19	gi|410670174|ref|YP_006922545.1|	-	0.076	12.6	0.0	0.15	11.6	0.0	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
RPW8	PF05659.11	gi|410670174|ref|YP_006922545.1|	-	0.086	12.5	0.1	0.38	10.4	0.0	2.0	2	1	0	2	2	2	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Sigma54_activ_2	PF14532.6	gi|410670174|ref|YP_006922545.1|	-	0.094	12.8	0.0	0.41	10.7	0.0	1.9	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_33	PF13671.6	gi|410670174|ref|YP_006922545.1|	-	0.14	12.4	0.0	0.19	11.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|410670174|ref|YP_006922545.1|	-	0.14	12.1	0.1	0.32	10.9	0.0	1.6	2	0	0	2	2	2	0	NACHT	domain
eIF2_C	PF09173.11	gi|410670175|ref|YP_006922546.1|	-	3.7e-33	113.6	0.1	8.3e-33	112.5	0.1	1.6	1	0	0	1	1	1	1	Initiation	factor	eIF2	gamma,	C	terminal
GTP_EFTU	PF00009.27	gi|410670175|ref|YP_006922546.1|	-	1.6e-28	99.6	1.9	1.7e-27	96.3	1.9	2.0	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D2	PF03144.25	gi|410670175|ref|YP_006922546.1|	-	4.3e-08	33.4	0.8	1.4e-07	31.8	0.8	2.0	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
RsgA_GTPase	PF03193.16	gi|410670175|ref|YP_006922546.1|	-	3.8e-06	26.9	0.8	3.2e-05	23.9	0.1	2.2	2	0	0	2	2	2	1	RsgA	GTPase
MMR_HSR1_Xtn	PF16897.5	gi|410670175|ref|YP_006922546.1|	-	0.00087	19.3	0.1	0.0017	18.3	0.1	1.4	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
PduV-EutP	PF10662.9	gi|410670175|ref|YP_006922546.1|	-	0.035	13.9	0.5	7.7	6.3	0.2	2.4	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
MMR_HSR1	PF01926.23	gi|410670175|ref|YP_006922546.1|	-	0.037	14.1	0.0	0.16	12.1	0.0	2.1	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|410670175|ref|YP_006922546.1|	-	0.039	13.5	0.5	1.9	8.0	0.3	2.7	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B
Nop10p	PF04135.12	gi|410670175|ref|YP_006922546.1|	-	0.21	11.6	1.1	0.4	10.7	1.1	1.4	1	0	0	1	1	1	0	Nucleolar	RNA-binding	protein,	Nop10p	family
PIN_9	PF18477.1	gi|410670176|ref|YP_006922547.1|	-	4.7e-47	159.1	0.1	5.3e-47	158.9	0.1	1.0	1	0	0	1	1	1	1	PIN	like	domain
PIN_4	PF13638.6	gi|410670176|ref|YP_006922547.1|	-	0.002	18.4	0.1	0.0043	17.3	0.1	1.7	1	1	0	1	1	1	1	PIN	domain
PIN_5	PF08745.11	gi|410670176|ref|YP_006922547.1|	-	0.0044	16.5	0.0	0.039	13.4	0.0	1.9	2	0	0	2	2	2	1	PINc	domain	ribonuclease
PIN	PF01850.21	gi|410670176|ref|YP_006922547.1|	-	0.015	15.8	0.2	0.025	15.1	0.2	1.4	1	1	0	1	1	1	0	PIN	domain
DUF5615	PF18480.1	gi|410670176|ref|YP_006922547.1|	-	0.062	13.1	0.0	0.15	11.8	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5615)
XPG_I_2	PF12813.7	gi|410670176|ref|YP_006922547.1|	-	0.13	11.8	0.0	0.14	11.6	0.0	1.2	1	0	0	1	1	1	0	XPG	domain	containing
RNase_Zc3h12a	PF11977.8	gi|410670176|ref|YP_006922547.1|	-	0.14	12.0	0.0	0.15	11.8	0.0	1.3	1	1	0	1	1	1	0	Zc3h12a-like	Ribonuclease	NYN	domain
DUF4411	PF14367.6	gi|410670176|ref|YP_006922547.1|	-	0.19	11.6	0.0	0.37	10.7	0.0	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4411)
SHS2_Rpb7-N	PF03876.17	gi|410670177|ref|YP_006922548.1|	-	7e-20	71.2	0.0	1.3e-19	70.3	0.0	1.5	1	0	0	1	1	1	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
S1	PF00575.23	gi|410670177|ref|YP_006922548.1|	-	1.5e-11	44.5	0.5	3.2e-11	43.4	0.5	1.5	1	0	0	1	1	1	1	S1	RNA	binding	domain
RNA_pol_Rbc25	PF08292.12	gi|410670177|ref|YP_006922548.1|	-	0.011	16.0	0.0	0.017	15.3	0.0	1.4	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	Rpc25
DUF826	PF05696.11	gi|410670177|ref|YP_006922548.1|	-	0.015	15.4	0.0	0.032	14.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF826)
RNase_II_C_S1	PF18614.1	gi|410670177|ref|YP_006922548.1|	-	0.11	12.4	0.3	0.11	12.4	0.3	2.0	2	0	0	2	2	2	0	RNase	II-type	exonuclease	C-terminal	S1	domain
Spt4	PF06093.13	gi|410670178|ref|YP_006922549.1|	-	3.5e-15	55.9	0.5	4e-15	55.7	0.5	1.1	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
Prok-RING_4	PF14447.6	gi|410670178|ref|YP_006922549.1|	-	0.0013	18.6	1.8	0.0018	18.1	1.8	1.2	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	4
TF_Zn_Ribbon	PF08271.12	gi|410670178|ref|YP_006922549.1|	-	0.0017	17.8	0.2	0.032	13.7	0.0	2.2	2	0	0	2	2	2	1	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|410670178|ref|YP_006922549.1|	-	0.0022	17.3	1.9	0.0069	15.8	0.4	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-C3HC4_3	PF13920.6	gi|410670178|ref|YP_006922549.1|	-	0.01	15.6	1.6	0.014	15.3	1.6	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
DZR	PF12773.7	gi|410670178|ref|YP_006922549.1|	-	0.014	15.4	0.8	0.018	15.1	0.8	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-P11	PF03854.14	gi|410670178|ref|YP_006922549.1|	-	0.044	13.5	1.7	0.075	12.7	1.7	1.3	1	0	0	1	1	1	0	P-11	zinc	finger
HypA	PF01155.19	gi|410670178|ref|YP_006922549.1|	-	0.058	13.4	0.3	0.073	13.1	0.3	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-RRN7	PF11781.8	gi|410670178|ref|YP_006922549.1|	-	0.06	13.0	2.8	5.3	6.8	0.5	2.1	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
RecR	PF02132.15	gi|410670178|ref|YP_006922549.1|	-	0.062	12.9	3.9	0.093	12.3	3.9	1.3	1	0	0	1	1	1	0	RecR	protein
OrfB_Zn_ribbon	PF07282.11	gi|410670178|ref|YP_006922549.1|	-	0.24	11.3	3.8	0.53	10.3	3.8	1.7	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Prim_Zn_Ribbon	PF08273.12	gi|410670178|ref|YP_006922549.1|	-	1.6	9.1	4.5	5.4	7.4	0.4	2.1	1	1	1	2	2	2	0	Zinc-binding	domain	of	primase-helicase
DUF359	PF04019.12	gi|410670179|ref|YP_006922550.1|	-	2.9e-41	140.0	0.0	3.7e-41	139.7	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
Apocytochr_F_N	PF16639.5	gi|410670179|ref|YP_006922550.1|	-	0.062	13.6	0.0	0.09	13.1	0.0	1.3	1	0	0	1	1	1	0	Apocytochrome	F,	N-terminal
NIR_SIR_ferr	PF03460.17	gi|410670179|ref|YP_006922550.1|	-	0.087	12.7	0.1	8.1	6.4	0.0	2.6	3	0	0	3	3	3	0	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
Ribosomal_S24e	PF01282.19	gi|410670180|ref|YP_006922551.1|	-	2.4e-24	85.0	0.1	3e-24	84.7	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S24e
Ribosomal_S27	PF01599.19	gi|410670181|ref|YP_006922552.1|	-	2.5e-20	72.3	2.3	2.8e-20	72.2	2.3	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S27a
Ribosomal_L37e	PF01907.19	gi|410670181|ref|YP_006922552.1|	-	0.0012	19.0	1.0	0.0013	18.8	1.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L37e
DUF1451	PF07295.11	gi|410670181|ref|YP_006922552.1|	-	0.0046	17.0	0.5	0.0046	17.0	0.5	1.0	1	0	0	1	1	1	1	Zinc-ribbon	containing	domain
zf-NADH-PPase	PF09297.11	gi|410670181|ref|YP_006922552.1|	-	0.036	13.7	4.0	0.099	12.3	4.0	1.7	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
MqsA_antitoxin	PF15731.5	gi|410670181|ref|YP_006922552.1|	-	0.042	13.9	0.2	0.042	13.9	0.2	1.1	1	0	0	1	1	1	0	Antitoxin	component	of	bacterial	toxin-antitoxin	system,	MqsA
DUF2387	PF09526.10	gi|410670181|ref|YP_006922552.1|	-	0.064	13.4	2.0	0.11	12.7	2.0	1.4	1	1	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
Zn_Tnp_IS1595	PF12760.7	gi|410670181|ref|YP_006922552.1|	-	0.093	12.7	3.5	0.13	12.2	3.5	1.4	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf_C2H2_10	PF18414.1	gi|410670181|ref|YP_006922552.1|	-	0.19	11.3	1.4	12	5.5	0.1	2.2	2	0	0	2	2	2	0	C2H2	type	zinc-finger
Nudix_N_2	PF14803.6	gi|410670181|ref|YP_006922552.1|	-	0.32	10.9	5.7	5.4	7.0	5.3	2.2	1	1	1	2	2	2	0	Nudix	N-terminal
DDE_Tnp_1	PF01609.21	gi|410670182|ref|YP_006922553.1|	-	4.3e-09	36.3	5.9	1.2e-08	34.9	5.9	1.7	1	1	0	1	1	1	1	Transposase	DDE	domain
Methyltransf_31	PF13847.6	gi|410670182|ref|YP_006922553.1|	-	0.078	12.8	0.2	1.5	8.6	0.0	2.5	1	1	0	2	2	2	0	Methyltransferase	domain
DUF2162	PF09930.9	gi|410670183|ref|YP_006922554.1|	-	1.6e-67	227.2	25.9	1.8e-67	227.1	25.9	1.0	1	0	0	1	1	1	1	Predicted	transporter	(DUF2162)
PLAC8	PF04749.17	gi|410670183|ref|YP_006922554.1|	-	1.7	9.7	4.2	4.4	8.4	4.2	1.9	1	1	0	1	1	1	0	PLAC8	family
MotA_ExbB	PF01618.16	gi|410670184|ref|YP_006922555.1|	-	2.3e-13	50.0	1.3	3.1e-13	49.6	1.3	1.2	1	0	0	1	1	1	1	MotA/TolQ/ExbB	proton	channel	family
DUF2149	PF09919.9	gi|410670185|ref|YP_006922556.1|	-	1.8e-33	114.6	0.5	2.1e-33	114.4	0.5	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2149)
CobN-Mg_chel	PF02514.16	gi|410670186|ref|YP_006922557.1|	-	0	1076.5	5.0	0	1076.2	5.0	1.1	1	0	0	1	1	1	1	CobN/Magnesium	Chelatase
CarboxypepD_reg	PF13620.6	gi|410670186|ref|YP_006922557.1|	-	0.0013	19.0	0.0	0.0044	17.2	0.0	2.0	1	0	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
CarbopepD_reg_2	PF13715.6	gi|410670186|ref|YP_006922557.1|	-	0.0036	17.3	0.0	0.011	15.7	0.0	1.8	1	0	0	1	1	1	1	CarboxypepD_reg-like	domain
TRM13	PF05206.14	gi|410670186|ref|YP_006922557.1|	-	0.04	13.4	0.1	0.075	12.5	0.1	1.4	1	0	0	1	1	1	0	Methyltransferase	TRM13
CobN-Mg_chel	PF02514.16	gi|410670187|ref|YP_006922558.1|	-	0	1136.7	3.1	0	1130.5	1.5	2.3	2	0	0	2	2	2	2	CobN/Magnesium	Chelatase
Peptidase_S8	PF00082.22	gi|410670188|ref|YP_006922559.1|	-	1.4e-41	142.7	2.5	1.4e-41	142.7	2.5	3.5	3	2	0	3	3	3	1	Subtilase	family
Big_3	PF07523.12	gi|410670188|ref|YP_006922559.1|	-	7.3e-18	64.6	19.1	0.0063	16.8	0.1	7.2	5	1	0	5	5	5	5	Bacterial	Ig-like	domain	(group	3)
Big_2	PF02368.18	gi|410670188|ref|YP_006922559.1|	-	4.8e-12	45.6	9.6	4.8e-12	45.6	9.6	6.9	5	2	2	7	7	7	1	Bacterial	Ig-like	domain	(group	2)
DHBP_synthase	PF00926.19	gi|410670188|ref|YP_006922559.1|	-	0.015	14.8	20.0	0.024	14.2	1.0	4.2	2	1	1	4	4	4	0	3,4-dihydroxy-2-butanone	4-phosphate	synthase
Peptidase_S8	PF00082.22	gi|410670189|ref|YP_006922560.1|	-	5.4e-49	167.0	11.0	1.4e-48	165.7	11.0	1.8	1	0	0	1	1	1	1	Subtilase	family
Peptidase_M22	PF00814.25	gi|410670190|ref|YP_006922561.1|	-	1.5e-88	297.0	0.1	1.8e-88	296.8	0.1	1.0	1	0	0	1	1	1	1	Glycoprotease	family
Carbam_trans_N	PF02543.15	gi|410670190|ref|YP_006922561.1|	-	0.00052	19.8	0.0	0.033	13.9	0.0	2.2	2	0	0	2	2	2	2	Carbamoyltransferase	N-terminus
Ribosomal_S11	PF00411.19	gi|410670190|ref|YP_006922561.1|	-	0.011	16.2	0.4	0.046	14.1	0.1	1.9	2	0	0	2	2	2	0	Ribosomal	protein	S11
RIO1	PF01163.22	gi|410670191|ref|YP_006922562.1|	-	9.1e-12	45.0	0.0	1.2e-11	44.5	0.0	1.2	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.23	gi|410670191|ref|YP_006922562.1|	-	4.9e-08	33.2	0.4	0.0008	19.4	0.1	2.2	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Kdo	PF06293.14	gi|410670191|ref|YP_006922562.1|	-	5.5e-05	22.6	0.0	0.0027	17.1	0.0	2.1	1	1	1	2	2	2	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase	PF00069.25	gi|410670191|ref|YP_006922562.1|	-	0.00047	19.6	0.0	0.00081	18.8	0.0	1.4	1	0	0	1	1	1	1	Protein	kinase	domain
Choline_kinase	PF01633.20	gi|410670191|ref|YP_006922562.1|	-	0.0093	15.6	0.0	0.27	10.8	0.0	2.1	1	1	1	2	2	2	1	Choline/ethanolamine	kinase
WaaY	PF06176.11	gi|410670191|ref|YP_006922562.1|	-	0.026	14.2	0.0	0.032	13.8	0.0	1.2	1	0	0	1	1	1	0	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
DUF4135	PF13575.6	gi|410670191|ref|YP_006922562.1|	-	0.14	11.5	0.0	0.22	10.8	0.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4135)
Pkinase_Tyr	PF07714.17	gi|410670191|ref|YP_006922562.1|	-	0.14	11.4	0.0	0.22	10.8	0.0	1.4	1	0	0	1	1	1	0	Protein	tyrosine	kinase
Ham1p_like	PF01725.16	gi|410670192|ref|YP_006922563.1|	-	9.8e-55	185.4	0.0	1.1e-54	185.2	0.0	1.0	1	0	0	1	1	1	1	Ham1	family
TEX12	PF15219.6	gi|410670193|ref|YP_006922564.1|	-	0.12	12.7	0.0	2.4	8.5	0.0	2.1	2	0	0	2	2	2	0	Testis-expressed	12
JmjC	PF02373.22	gi|410670193|ref|YP_006922564.1|	-	0.14	12.6	0.0	0.2	12.1	0.0	1.3	1	0	0	1	1	1	0	JmjC	domain,	hydroxylase
Arch_flagellin	PF01917.16	gi|410670194|ref|YP_006922565.1|	-	4.5e-30	105.0	10.3	1.5e-17	64.3	8.3	2.1	1	1	0	2	2	2	2	Archaebacterial	flagellin
DUF1583	PF07622.11	gi|410670194|ref|YP_006922565.1|	-	0.16	10.7	0.0	9	4.9	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1583)
Cyclase	PF04199.13	gi|410670195|ref|YP_006922566.1|	-	2.1e-27	96.0	0.0	2.7e-27	95.7	0.0	1.1	1	0	0	1	1	1	1	Putative	cyclase
PHP	PF02811.19	gi|410670196|ref|YP_006922567.1|	-	1.3e-09	38.5	0.1	1.7e-09	38.2	0.1	1.3	1	1	0	1	1	1	1	PHP	domain
RNase_P_p30	PF01876.16	gi|410670196|ref|YP_006922567.1|	-	9e-05	22.0	0.0	0.00015	21.3	0.0	1.3	1	0	0	1	1	1	1	RNase	P	subunit	p30
PhageP22-tail	PF09251.10	gi|410670196|ref|YP_006922567.1|	-	0.015	13.7	0.0	0.021	13.2	0.0	1.1	1	0	0	1	1	1	0	Salmonella	phage	P22	tail-spike
AAA_26	PF13500.6	gi|410670196|ref|YP_006922567.1|	-	0.024	14.4	0.1	0.038	13.8	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
TPR_10	PF13374.6	gi|410670197|ref|YP_006922568.1|	-	1.3e-09	37.6	3.6	0.034	14.0	0.0	5.9	6	0	0	6	6	6	2	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|410670197|ref|YP_006922568.1|	-	4.4e-09	36.5	2.1	1.1	9.6	0.1	6.5	4	3	1	5	5	5	3	Tetratricopeptide	repeat
TPR_1	PF00515.28	gi|410670197|ref|YP_006922568.1|	-	4.8e-07	29.3	15.8	5.9	6.9	0.0	9.3	10	1	0	10	10	10	2	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|410670197|ref|YP_006922568.1|	-	2.8e-06	27.0	7.8	1.2	9.3	0.0	7.8	7	3	0	7	7	7	1	Tetratricopeptide	repeat
MIT	PF04212.18	gi|410670197|ref|YP_006922568.1|	-	1.9e-05	24.6	0.9	0.79	9.8	0.0	4.7	5	0	0	5	5	5	1	MIT	(microtubule	interacting	and	transport)	domain
SNAP	PF14938.6	gi|410670197|ref|YP_006922568.1|	-	2.2e-05	24.1	1.5	0.014	14.8	0.1	2.6	1	1	1	2	2	2	2	Soluble	NSF	attachment	protein,	SNAP
TPR_2	PF07719.17	gi|410670197|ref|YP_006922568.1|	-	4.5e-05	23.3	12.0	1.1	9.5	0.0	9.0	9	2	1	10	10	10	1	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|410670197|ref|YP_006922568.1|	-	4.6e-05	23.3	10.6	5.7	7.4	0.1	8.1	7	4	1	8	8	8	1	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|410670197|ref|YP_006922568.1|	-	8.9e-05	22.1	21.0	1.8	8.3	0.0	7.6	9	0	0	9	9	9	2	TPR	repeat
TPR_6	PF13174.6	gi|410670197|ref|YP_006922568.1|	-	0.0062	17.1	1.2	1.1e+02	3.8	0.0	5.2	6	0	0	6	6	6	0	Tetratricopeptide	repeat
DUF5630	PF18632.1	gi|410670197|ref|YP_006922568.1|	-	0.012	14.9	1.6	0.31	10.3	0.1	2.6	2	2	1	3	3	3	0	Family	of	unknown	function	(DUF5630)
FtsJ	PF01728.19	gi|410670198|ref|YP_006922569.1|	-	3.8e-57	193.2	0.0	5.3e-57	192.8	0.0	1.2	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
TRAM	PF01938.20	gi|410670198|ref|YP_006922569.1|	-	5.4e-10	39.1	1.0	1e-09	38.2	1.0	1.5	1	0	0	1	1	1	1	TRAM	domain
Methyltransf_23	PF13489.6	gi|410670198|ref|YP_006922569.1|	-	7.3e-05	22.7	0.0	0.00069	19.5	0.0	2.2	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|410670198|ref|YP_006922569.1|	-	0.00021	21.1	0.1	0.0041	16.9	0.1	2.2	1	1	0	1	1	1	1	Methyltransferase	domain
Hexapep	PF00132.24	gi|410670198|ref|YP_006922569.1|	-	0.00029	20.4	0.4	0.00062	19.4	0.4	1.5	1	0	0	1	1	1	1	Bacterial	transferase	hexapeptide	(six	repeats)
Methyltransf_25	PF13649.6	gi|410670198|ref|YP_006922569.1|	-	0.017	15.8	0.2	0.44	11.3	0.1	2.4	1	1	1	2	2	2	0	Methyltransferase	domain
DUF4265	PF14085.6	gi|410670198|ref|YP_006922569.1|	-	0.041	13.8	0.0	2.4	8.2	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4265)
Methyltransf_11	PF08241.12	gi|410670198|ref|YP_006922569.1|	-	0.084	13.5	0.0	0.32	11.7	0.0	2.0	1	1	0	1	1	1	0	Methyltransferase	domain
acVLRF1	PF18859.1	gi|410670200|ref|YP_006922571.1|	-	2e-17	63.7	0.0	2e-17	63.7	0.0	1.7	2	0	0	2	2	2	1	Actinobacteria/chloroflexi	VLRF1	release	factor
baeRF_family10	PF18854.1	gi|410670200|ref|YP_006922571.1|	-	1.4e-07	31.9	0.4	2.8e-07	30.8	0.0	1.7	2	0	0	2	2	2	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
eRF1_2	PF03464.15	gi|410670200|ref|YP_006922571.1|	-	1.1e-05	25.8	0.0	1.9e-05	25.0	0.0	1.4	1	0	0	1	1	1	1	eRF1	domain	2
baeRF_family2	PF18844.1	gi|410670200|ref|YP_006922571.1|	-	0.0003	20.9	0.3	0.0018	18.3	0.0	2.1	2	0	0	2	2	2	1	Bacterial	archaeo-eukaryotic	release	factor	family	2
Cnn_1N	PF07989.11	gi|410670200|ref|YP_006922571.1|	-	0.013	15.6	4.7	0.035	14.2	4.7	1.7	1	0	0	1	1	1	0	Centrosomin	N-terminal	motif	1
DUF5394	PF17372.2	gi|410670200|ref|YP_006922571.1|	-	0.042	13.4	1.6	0.065	12.8	0.6	1.8	2	1	0	2	2	2	0	Family	of	unknown	function	(DUF5394)
GrpE	PF01025.19	gi|410670200|ref|YP_006922571.1|	-	0.15	11.7	4.4	0.26	10.9	2.5	2.0	2	0	0	2	2	2	0	GrpE
HMMR_N	PF15905.5	gi|410670200|ref|YP_006922571.1|	-	2.3	7.6	9.6	0.16	11.4	4.7	1.4	2	0	0	2	2	2	0	Hyaluronan	mediated	motility	receptor	N-terminal
FGE-sulfatase	PF03781.16	gi|410670201|ref|YP_006922572.1|	-	5.4e-46	157.3	6.6	2.5e-45	155.1	6.6	1.8	1	1	0	1	1	1	1	Sulfatase-modifying	factor	enzyme	1
DUF1566	PF07603.11	gi|410670201|ref|YP_006922572.1|	-	0.051	13.9	1.5	0.092	13.1	1.5	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1566)
zf-Di19	PF05605.12	gi|410670202|ref|YP_006922573.1|	-	0.032	14.5	0.0	0.043	14.1	0.0	1.2	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
Peripla_BP_6	PF13458.6	gi|410670203|ref|YP_006922574.1|	-	3.1e-29	102.7	0.3	3.4e-29	102.6	0.3	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.28	gi|410670203|ref|YP_006922574.1|	-	4.7e-28	98.3	0.0	1.7e-27	96.5	0.0	1.7	1	1	0	1	1	1	1	Receptor	family	ligand	binding	region
LppC	PF04348.13	gi|410670203|ref|YP_006922574.1|	-	1.4e-06	27.5	0.0	1.8e-06	27.1	0.0	1.1	1	0	0	1	1	1	1	LppC	putative	lipoprotein
Peripla_BP_5	PF13433.6	gi|410670203|ref|YP_006922574.1|	-	0.0025	16.9	0.0	0.0038	16.3	0.0	1.3	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
CoA_binding_2	PF13380.6	gi|410670203|ref|YP_006922574.1|	-	0.063	13.8	0.0	0.17	12.4	0.0	1.6	2	0	0	2	2	2	0	CoA	binding	domain
Abhydrolase_8	PF06259.12	gi|410670203|ref|YP_006922574.1|	-	0.15	11.7	0.0	0.25	11.0	0.0	1.3	1	0	0	1	1	1	0	Alpha/beta	hydrolase
Acetyltransf_1	PF00583.25	gi|410670204|ref|YP_006922575.1|	-	2.2e-11	44.0	0.0	3e-11	43.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|410670204|ref|YP_006922575.1|	-	7.4e-11	42.1	0.0	1.1e-10	41.6	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|410670204|ref|YP_006922575.1|	-	7.6e-10	39.1	0.0	1.3e-09	38.4	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|410670204|ref|YP_006922575.1|	-	4.7e-07	29.7	0.0	8.9e-07	28.8	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|410670204|ref|YP_006922575.1|	-	3.9e-06	27.1	0.0	6.9e-06	26.3	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|410670204|ref|YP_006922575.1|	-	6.8e-06	26.8	0.0	9.7e-06	26.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|410670204|ref|YP_006922575.1|	-	0.0014	18.3	0.0	0.0025	17.5	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|410670204|ref|YP_006922575.1|	-	0.0016	18.5	0.0	0.0029	17.7	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|410670204|ref|YP_006922575.1|	-	0.0049	17.0	0.0	0.0085	16.2	0.0	1.4	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_15	PF17013.5	gi|410670204|ref|YP_006922575.1|	-	0.028	13.9	0.0	0.036	13.5	0.0	1.3	1	0	0	1	1	1	0	Putative	acetyl-transferase
PanZ	PF12568.8	gi|410670204|ref|YP_006922575.1|	-	0.041	13.6	0.0	0.081	12.7	0.0	1.5	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain,	PanZ
Acetyltransf_16	PF05301.11	gi|410670204|ref|YP_006922575.1|	-	0.081	12.7	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	GNAT	acetyltransferase,	Mec-17
DFP	PF04127.15	gi|410670205|ref|YP_006922576.1|	-	2.2e-49	167.9	1.2	2.2e-47	161.3	0.1	2.2	2	0	0	2	2	2	2	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.19	gi|410670205|ref|YP_006922576.1|	-	1.5e-35	122.3	1.9	2.6e-35	121.5	1.9	1.4	1	0	0	1	1	1	1	Flavoprotein
DUF5634_N	PF18672.1	gi|410670205|ref|YP_006922576.1|	-	0.0083	15.9	0.0	4.4	7.1	0.0	3.4	3	0	0	3	3	3	1	Family	of	unknown	function	(DUF5634)
Pyr_redox	PF00070.27	gi|410670205|ref|YP_006922576.1|	-	0.052	14.1	0.5	0.37	11.4	0.0	2.6	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
SelB-wing_2	PF09106.11	gi|410670205|ref|YP_006922576.1|	-	0.11	12.7	0.0	0.27	11.5	0.0	1.6	1	0	0	1	1	1	0	Elongation	factor	SelB,	winged	helix
GHMP_kinases_N	PF00288.26	gi|410670206|ref|YP_006922577.1|	-	2.9e-10	40.2	1.7	6.5e-10	39.1	1.7	1.6	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|410670206|ref|YP_006922577.1|	-	0.0011	19.3	0.1	0.005	17.2	0.0	2.1	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
PPS_PS	PF02006.16	gi|410670207|ref|YP_006922578.1|	-	8.5e-76	253.4	1.4	1e-75	253.1	1.4	1.1	1	0	0	1	1	1	1	Phosphopantothenate/pantothenate	synthetase
DUF1722	PF08349.11	gi|410670207|ref|YP_006922578.1|	-	0.003	17.8	0.3	0.0071	16.6	0.1	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1722)
HD	PF01966.22	gi|410670208|ref|YP_006922579.1|	-	1.6e-13	51.0	2.2	1.9e-13	50.7	1.1	1.6	2	0	0	2	2	2	1	HD	domain
Amidohydro_1	PF01979.20	gi|410670209|ref|YP_006922580.1|	-	2.6e-78	263.7	0.9	3.1e-78	263.5	0.9	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|410670209|ref|YP_006922580.1|	-	1.4e-24	87.5	0.4	1.7e-17	64.1	0.0	2.3	2	0	0	2	2	2	2	Amidohydrolase	family
A_deaminase	PF00962.22	gi|410670209|ref|YP_006922580.1|	-	0.07	12.5	0.0	0.13	11.6	0.0	1.3	1	0	0	1	1	1	0	Adenosine/AMP	deaminase
AdoHcyase	PF05221.17	gi|410670210|ref|YP_006922581.1|	-	4.6e-56	190.2	0.0	3.4e-28	98.7	0.0	2.0	1	1	1	2	2	2	2	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.21	gi|410670210|ref|YP_006922581.1|	-	2.4e-49	167.5	1.3	2.4e-49	167.5	1.3	1.7	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|410670210|ref|YP_006922581.1|	-	3e-09	36.5	0.4	5.7e-09	35.6	0.4	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|410670210|ref|YP_006922581.1|	-	2.4e-07	30.5	0.2	4.1e-07	29.7	0.2	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
AlaDh_PNT_C	PF01262.21	gi|410670210|ref|YP_006922581.1|	-	0.0028	17.0	0.1	0.0045	16.3	0.1	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
TSCPD	PF12637.7	gi|410670210|ref|YP_006922581.1|	-	0.043	14.1	0.3	7.2	6.9	0.2	2.6	2	0	0	2	2	2	0	TSCPD	domain
RNA_pol_Rpb5_C	PF01191.19	gi|410670211|ref|YP_006922582.1|	-	2.9e-31	107.2	0.4	3.1e-31	107.0	0.4	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
RNA_pol_Rpb2_1	PF04563.15	gi|410670212|ref|YP_006922583.1|	-	7.6e-56	188.8	0.6	2.6e-55	187.1	0.4	1.8	2	0	0	2	2	2	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_3	PF04565.16	gi|410670212|ref|YP_006922583.1|	-	1.3e-26	92.5	0.0	2.3e-26	91.8	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb2_2	PF04561.14	gi|410670212|ref|YP_006922583.1|	-	6.9e-26	91.0	0.1	1.1e-25	90.4	0.1	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_6	PF00562.28	gi|410670213|ref|YP_006922584.1|	-	4e-126	421.2	0.0	4.9e-126	420.9	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_7	PF04560.20	gi|410670213|ref|YP_006922584.1|	-	7.4e-31	106.4	0.2	4.2e-30	104.0	0.1	2.2	2	0	0	2	2	2	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_4	PF04566.13	gi|410670213|ref|YP_006922584.1|	-	7.3e-21	74.2	0.3	1.5e-20	73.2	0.3	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_5	PF04567.17	gi|410670213|ref|YP_006922584.1|	-	1.5e-10	41.4	0.8	4.8e-10	39.8	0.8	1.9	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
DUF1451	PF07295.11	gi|410670213|ref|YP_006922584.1|	-	0.0087	16.1	0.5	0.016	15.2	0.5	1.3	1	0	0	1	1	1	1	Zinc-ribbon	containing	domain
zf-NADH-PPase	PF09297.11	gi|410670213|ref|YP_006922584.1|	-	0.041	13.5	0.9	0.26	11.0	0.0	2.4	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
RNA_pol_Rpb2_45	PF10385.9	gi|410670213|ref|YP_006922584.1|	-	0.055	13.7	0.2	0.29	11.5	0.1	2.2	2	0	0	2	2	2	0	RNA	polymerase	beta	subunit	external	1	domain
Nudix_N_2	PF14803.6	gi|410670213|ref|YP_006922584.1|	-	0.14	12.1	2.0	16	5.5	0.0	2.8	3	0	0	3	3	3	0	Nudix	N-terminal
RNA_pol_Rpb1_1	PF04997.12	gi|410670214|ref|YP_006922585.1|	-	7e-104	347.5	0.0	1.2e-103	346.7	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_2	PF00623.20	gi|410670214|ref|YP_006922585.1|	-	9.7e-71	237.3	0.2	1.7e-70	236.6	0.2	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_4	PF05000.17	gi|410670214|ref|YP_006922585.1|	-	9.7e-34	115.6	0.1	2.7e-33	114.1	0.1	1.9	1	1	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	4
RNA_pol_Rpb1_3	PF04983.18	gi|410670214|ref|YP_006922585.1|	-	2.4e-31	108.8	0.0	4.2e-31	108.0	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	3
RNA_pol_Rpb1_5	PF04998.17	gi|410670214|ref|YP_006922585.1|	-	1.8e-28	99.7	0.1	7.2e-28	97.8	0.1	1.8	2	0	0	2	2	2	1	RNA	polymerase	Rpb1,	domain	5
RNA_pol_Rpb1_5	PF04998.17	gi|410670215|ref|YP_006922586.1|	-	7.3e-56	189.5	0.4	1.3e-55	188.8	0.4	1.3	1	1	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
Peptidase_M24	PF00557.24	gi|410670215|ref|YP_006922586.1|	-	0.02	14.6	0.0	0.074	12.7	0.0	2.0	2	1	1	3	3	3	0	Metallopeptidase	family	M24
RNA_pol_Rpb1_7	PF04990.12	gi|410670215|ref|YP_006922586.1|	-	0.048	13.7	0.1	0.1	12.6	0.1	1.5	1	0	0	1	1	1	0	RNA	polymerase	Rpb1,	domain	7
NAC	PF01849.18	gi|410670215|ref|YP_006922586.1|	-	0.13	12.2	0.2	0.74	9.8	0.0	2.3	2	0	0	2	2	2	0	NAC	domain
Ribosomal_L7Ae	PF01248.26	gi|410670216|ref|YP_006922587.1|	-	7.8e-14	51.2	0.3	9.7e-14	50.9	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
KH_2	PF07650.17	gi|410670217|ref|YP_006922588.1|	-	4.1e-22	77.8	5.1	3e-16	59.0	0.6	2.1	1	1	1	2	2	2	2	KH	domain
KH_5	PF13184.6	gi|410670217|ref|YP_006922588.1|	-	7.8e-16	57.9	2.5	7.1e-14	51.6	0.6	2.3	2	0	0	2	2	2	2	NusA-like	KH	domain
KH_4	PF13083.6	gi|410670217|ref|YP_006922588.1|	-	1.3e-05	24.9	0.8	0.0043	16.9	0.0	2.3	2	0	0	2	2	2	2	KH	domain
KH_1	PF00013.29	gi|410670217|ref|YP_006922588.1|	-	4e-05	23.3	1.2	0.095	12.5	0.2	2.3	2	0	0	2	2	2	2	KH	domain
DUF1512	PF07431.12	gi|410670217|ref|YP_006922588.1|	-	0.019	14.0	0.4	0.032	13.2	0.1	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1512)
Ribosom_S12_S23	PF00164.25	gi|410670218|ref|YP_006922589.1|	-	5.7e-47	158.1	0.2	8e-47	157.6	0.2	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
Ribosomal_S7	PF00177.21	gi|410670219|ref|YP_006922590.1|	-	2e-36	124.9	7.9	2.4e-36	124.6	7.9	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S7p/S5e
GTP_EFTU	PF00009.27	gi|410670220|ref|YP_006922591.1|	-	1.2e-63	214.2	0.3	2.1e-63	213.4	0.3	1.4	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
EFG_IV	PF03764.18	gi|410670220|ref|YP_006922591.1|	-	6.7e-29	100.1	0.1	3.2e-28	97.9	0.0	2.3	2	0	0	2	2	2	1	Elongation	factor	G,	domain	IV
EFG_C	PF00679.24	gi|410670220|ref|YP_006922591.1|	-	6.2e-24	83.9	0.0	1.7e-23	82.4	0.0	1.9	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
EFG_II	PF14492.6	gi|410670220|ref|YP_006922591.1|	-	1e-23	83.2	3.3	1.2e-23	83.0	1.0	2.3	2	0	0	2	2	2	1	Elongation	Factor	G,	domain	II
GTP_EFTU_D2	PF03144.25	gi|410670220|ref|YP_006922591.1|	-	2.7e-12	46.9	0.4	8.8e-12	45.3	0.4	2.0	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|410670220|ref|YP_006922591.1|	-	6e-05	23.1	0.1	0.00016	21.7	0.1	1.7	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
RF3_C	PF16658.5	gi|410670220|ref|YP_006922591.1|	-	0.0053	16.6	0.0	0.017	15.0	0.0	1.8	1	0	0	1	1	1	1	Class	II	release	factor	RF3,	C-terminal	domain
Septin	PF00735.18	gi|410670220|ref|YP_006922591.1|	-	0.1	11.9	0.8	0.16	11.3	0.1	1.6	2	0	0	2	2	2	0	Septin
Ras	PF00071.22	gi|410670220|ref|YP_006922591.1|	-	0.1	12.2	0.1	0.19	11.3	0.1	1.4	1	0	0	1	1	1	0	Ras	family
GTP_EFTU	PF00009.27	gi|410670221|ref|YP_006922592.1|	-	5.4e-56	189.2	0.0	6.6e-56	188.9	0.0	1.2	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.17	gi|410670221|ref|YP_006922592.1|	-	9.1e-37	125.8	0.2	3.1e-36	124.1	0.1	1.9	2	0	0	2	2	2	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.25	gi|410670221|ref|YP_006922592.1|	-	4.7e-15	55.7	1.2	1.5e-14	54.1	0.7	2.2	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|410670221|ref|YP_006922592.1|	-	2.2e-06	27.7	0.0	2.7e-05	24.2	0.0	2.3	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
Ras	PF00071.22	gi|410670221|ref|YP_006922592.1|	-	0.0052	16.4	0.4	0.028	14.0	0.1	2.0	2	0	0	2	2	2	1	Ras	family
Dynamin_N	PF00350.23	gi|410670221|ref|YP_006922592.1|	-	0.017	15.2	0.0	2.7	8.0	0.0	2.4	1	1	0	1	1	1	0	Dynamin	family
FeoB_N	PF02421.18	gi|410670221|ref|YP_006922592.1|	-	0.022	14.3	0.0	0.73	9.4	0.0	2.8	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B
Gtr1_RagA	PF04670.12	gi|410670221|ref|YP_006922592.1|	-	0.026	13.9	0.0	0.11	11.8	0.0	1.8	2	0	0	2	2	2	0	Gtr1/RagA	G	protein	conserved	region
GTP_EFTU_D4	PF14578.6	gi|410670221|ref|YP_006922592.1|	-	0.04	13.8	0.4	0.098	12.6	0.4	1.7	1	0	0	1	1	1	0	Elongation	factor	Tu	domain	4
Roc	PF08477.13	gi|410670221|ref|YP_006922592.1|	-	0.049	13.9	0.0	6.2	7.1	0.0	2.4	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
NTP_transf_3	PF12804.7	gi|410670221|ref|YP_006922592.1|	-	0.11	12.8	0.0	0.18	12.2	0.0	1.4	1	0	0	1	1	1	0	MobA-like	NTP	transferase	domain
Septin	PF00735.18	gi|410670221|ref|YP_006922592.1|	-	0.14	11.4	0.0	0.27	10.5	0.0	1.4	1	0	0	1	1	1	0	Septin
Ribosomal_S10	PF00338.22	gi|410670222|ref|YP_006922593.1|	-	4.4e-26	91.0	0.0	4.9e-26	90.8	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
NadA	PF02445.16	gi|410670223|ref|YP_006922594.1|	-	1.1e-121	405.6	1.5	1.2e-121	405.5	1.5	1.0	1	0	0	1	1	1	1	Quinolinate	synthetase	A	protein
Asparaginase	PF00710.20	gi|410670223|ref|YP_006922594.1|	-	0.016	14.8	0.1	0.033	13.7	0.1	1.4	1	0	0	1	1	1	0	Asparaginase,	N-terminal
ThiF	PF00899.21	gi|410670224|ref|YP_006922595.1|	-	2.8e-64	216.8	0.0	3.5e-64	216.5	0.0	1.0	1	0	0	1	1	1	1	ThiF	family
ApbA	PF02558.16	gi|410670224|ref|YP_006922595.1|	-	0.023	14.3	0.0	0.033	13.9	0.0	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Shikimate_DH	PF01488.20	gi|410670224|ref|YP_006922595.1|	-	0.044	13.8	0.1	0.12	12.4	0.0	1.7	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_7	PF13241.6	gi|410670224|ref|YP_006922595.1|	-	0.066	13.6	0.0	0.12	12.8	0.0	1.4	1	0	0	1	1	1	0	Putative	NAD(P)-binding
DAO	PF01266.24	gi|410670224|ref|YP_006922595.1|	-	0.14	11.7	0.3	0.8	9.2	0.1	1.9	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
Aminotran_5	PF00266.19	gi|410670225|ref|YP_006922596.1|	-	9.9e-19	67.5	0.0	1.4e-18	67.0	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
SepSecS	PF05889.13	gi|410670225|ref|YP_006922596.1|	-	3.4e-18	65.5	0.0	5.1e-18	64.9	0.0	1.2	1	0	0	1	1	1	1	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
Beta_elim_lyase	PF01212.21	gi|410670225|ref|YP_006922596.1|	-	0.0015	17.9	0.0	0.0023	17.3	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_1_2	PF00155.21	gi|410670225|ref|YP_006922596.1|	-	0.029	13.6	0.0	0.06	12.5	0.0	1.5	1	1	0	1	1	1	0	Aminotransferase	class	I	and	II
HTH_23	PF13384.6	gi|410670226|ref|YP_006922597.1|	-	8.7e-06	25.4	0.0	1.9e-05	24.3	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_24	PF13412.6	gi|410670226|ref|YP_006922597.1|	-	9.8e-06	25.0	0.0	1.7e-05	24.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.12	gi|410670226|ref|YP_006922597.1|	-	3.6e-05	23.3	0.0	6.5e-05	22.5	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_3	PF01381.22	gi|410670226|ref|YP_006922597.1|	-	4e-05	23.6	0.0	7.6e-05	22.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
MarR_2	PF12802.7	gi|410670226|ref|YP_006922597.1|	-	6.7e-05	22.7	0.0	0.00014	21.7	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|410670226|ref|YP_006922597.1|	-	0.00017	21.4	0.1	0.00068	19.4	0.0	2.1	3	0	0	3	3	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.6	gi|410670226|ref|YP_006922597.1|	-	0.0011	19.0	0.1	0.0019	18.3	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r3	PF04539.16	gi|410670226|ref|YP_006922597.1|	-	0.0031	17.6	0.1	0.015	15.4	0.0	2.1	1	1	2	3	3	3	1	Sigma-70	region	3
HTH_37	PF13744.6	gi|410670226|ref|YP_006922597.1|	-	0.0042	17.0	0.1	0.0061	16.5	0.1	1.4	1	1	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|410670226|ref|YP_006922597.1|	-	0.0044	16.5	0.0	0.0095	15.4	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_Tnp_ISL3	PF13542.6	gi|410670226|ref|YP_006922597.1|	-	0.0057	16.0	0.0	0.012	15.0	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_19	PF12844.7	gi|410670226|ref|YP_006922597.1|	-	0.0084	16.1	0.0	0.013	15.5	0.0	1.6	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|410670226|ref|YP_006922597.1|	-	0.0085	16.0	0.0	0.06	13.3	0.0	2.1	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_38	PF13936.6	gi|410670226|ref|YP_006922597.1|	-	0.0098	15.6	0.0	0.02	14.6	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|410670226|ref|YP_006922597.1|	-	0.01	15.6	0.0	0.021	14.6	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_31	PF13560.6	gi|410670226|ref|YP_006922597.1|	-	0.012	15.9	0.0	0.019	15.3	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_40	PF14493.6	gi|410670226|ref|YP_006922597.1|	-	0.018	15.5	0.0	0.022	15.2	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|410670226|ref|YP_006922597.1|	-	0.019	14.8	0.0	0.073	12.9	0.0	2.0	2	0	0	2	2	2	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
Fe_dep_repress	PF01325.19	gi|410670226|ref|YP_006922597.1|	-	0.019	15.1	0.1	0.039	14.2	0.1	1.7	1	1	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
GerE	PF00196.19	gi|410670226|ref|YP_006922597.1|	-	0.03	13.9	0.0	0.063	12.8	0.0	1.5	2	0	0	2	2	1	0	Bacterial	regulatory	proteins,	luxR	family
DUF2316	PF10078.9	gi|410670226|ref|YP_006922597.1|	-	0.03	14.5	0.0	0.042	14.1	0.0	1.4	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2316)
MazG-like	PF12643.7	gi|410670226|ref|YP_006922597.1|	-	0.054	13.7	0.0	0.078	13.2	0.0	1.3	1	0	0	1	1	1	0	MazG-like	family
TnsD	PF15978.5	gi|410670226|ref|YP_006922597.1|	-	0.068	12.1	0.0	0.069	12.1	0.0	1.1	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
HTH_Tnp_1	PF01527.20	gi|410670226|ref|YP_006922597.1|	-	0.073	13.4	0.0	0.098	13.0	0.0	1.3	1	1	0	1	1	1	0	Transposase
DUF4373	PF14297.6	gi|410670226|ref|YP_006922597.1|	-	0.11	13.3	0.1	0.2	12.5	0.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4373)
HTH_10	PF04967.12	gi|410670226|ref|YP_006922597.1|	-	0.14	12.0	0.0	0.34	10.8	0.0	1.6	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Aminotran_5	PF00266.19	gi|410670227|ref|YP_006922598.1|	-	4.7e-122	407.5	0.0	5.4e-122	407.3	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|410670227|ref|YP_006922598.1|	-	5.4e-10	39.0	0.1	7.1e-10	38.6	0.1	1.1	1	0	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.17	gi|410670227|ref|YP_006922598.1|	-	8.9e-08	31.8	0.0	1.3e-07	31.3	0.0	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_1_2	PF00155.21	gi|410670227|ref|YP_006922598.1|	-	9.5e-08	31.6	0.0	1.5e-07	31.0	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.20	gi|410670227|ref|YP_006922598.1|	-	6.7e-07	28.2	0.0	2.8e-06	26.1	0.0	1.8	2	0	0	2	2	2	1	Cys/Met	metabolism	PLP-dependent	enzyme
SelA	PF03841.13	gi|410670227|ref|YP_006922598.1|	-	0.003	16.6	0.0	0.027	13.5	0.0	2.1	1	1	0	1	1	1	1	L-seryl-tRNA	selenium	transferase
SepSecS	PF05889.13	gi|410670227|ref|YP_006922598.1|	-	0.0093	14.7	0.0	0.014	14.1	0.0	1.2	1	0	0	1	1	1	1	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
Pyridoxal_deC	PF00282.19	gi|410670227|ref|YP_006922598.1|	-	0.12	11.1	0.0	0.22	10.2	0.0	1.4	1	0	0	1	1	1	0	Pyridoxal-dependent	decarboxylase	conserved	domain
FdhD-NarQ	PF02634.15	gi|410670228|ref|YP_006922599.1|	-	4.6e-66	222.9	0.1	5.3e-66	222.7	0.1	1.0	1	0	0	1	1	1	1	FdhD/NarQ	family
ThiS	PF02597.20	gi|410670229|ref|YP_006922600.1|	-	3.8e-08	33.8	0.1	4.2e-08	33.7	0.1	1.0	1	0	0	1	1	1	1	ThiS	family
DUF348	PF03990.14	gi|410670229|ref|YP_006922600.1|	-	0.08	12.7	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	G5-linked-Ubiquitin-like	domain
DUF1198	PF06711.11	gi|410670229|ref|YP_006922600.1|	-	0.094	12.8	0.0	0.11	12.6	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1198)
GP3_package	PF16677.5	gi|410670229|ref|YP_006922600.1|	-	0.12	12.5	0.0	0.12	12.5	0.0	1.1	1	0	0	1	1	1	0	DNA-packaging	protein	gp3
DUF1724	PF08350.10	gi|410670230|ref|YP_006922601.1|	-	5.3e-23	80.9	0.0	1.1e-22	79.9	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
HTH_45	PF14947.6	gi|410670230|ref|YP_006922601.1|	-	0.00053	19.9	0.1	0.0015	18.5	0.1	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix
HAD_2	PF13419.6	gi|410670231|ref|YP_006922602.1|	-	6.8e-23	81.7	0.0	8.7e-23	81.3	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|410670231|ref|YP_006922602.1|	-	3.2e-13	50.5	0.0	3.5e-13	50.3	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|410670231|ref|YP_006922602.1|	-	7.8e-10	38.7	0.0	1.3e-09	37.9	0.0	1.4	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.7	gi|410670231|ref|YP_006922602.1|	-	0.026	15.0	0.0	0.034	14.5	0.0	1.3	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
FAD_binding_3	PF01494.19	gi|410670232|ref|YP_006922603.1|	-	4.2e-15	55.9	4.6	3.6e-13	49.5	4.6	3.3	1	1	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|410670232|ref|YP_006922603.1|	-	2.4e-10	40.4	2.2	3.7e-10	39.8	2.2	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.12	gi|410670232|ref|YP_006922603.1|	-	7.9e-10	38.3	1.9	6.3e-09	35.4	1.9	1.9	1	1	0	1	1	1	1	Lycopene	cyclase	protein
Thi4	PF01946.17	gi|410670232|ref|YP_006922603.1|	-	5.7e-08	32.3	0.7	1.2e-07	31.2	0.7	1.6	1	1	0	1	1	1	1	Thi4	family
Pyr_redox_2	PF07992.14	gi|410670232|ref|YP_006922603.1|	-	2.1e-07	30.5	0.5	2.1e-07	30.5	0.5	1.7	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|410670232|ref|YP_006922603.1|	-	3.9e-07	29.3	0.3	0.0013	17.6	0.0	2.2	2	0	0	2	2	2	2	Tryptophan	halogenase
DAO	PF01266.24	gi|410670232|ref|YP_006922603.1|	-	4e-07	30.0	6.5	7.5e-06	25.8	1.7	2.5	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|410670232|ref|YP_006922603.1|	-	8.3e-06	24.7	0.3	1.3e-05	24.2	0.3	1.2	1	0	0	1	1	1	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|410670232|ref|YP_006922603.1|	-	1.3e-05	25.3	0.4	1.3e-05	25.3	0.4	2.1	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
GIDA	PF01134.22	gi|410670232|ref|YP_006922603.1|	-	6.5e-05	22.2	0.2	6.5e-05	22.2	0.2	1.6	2	0	0	2	2	1	1	Glucose	inhibited	division	protein	A
Pyr_redox	PF00070.27	gi|410670232|ref|YP_006922603.1|	-	0.0013	19.2	0.2	0.0057	17.2	0.1	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|410670232|ref|YP_006922603.1|	-	0.0019	17.3	1.4	0.0019	17.3	1.4	1.9	2	0	0	2	2	2	1	FAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|410670232|ref|YP_006922603.1|	-	0.0078	15.5	0.3	0.016	14.5	0.3	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.18	gi|410670232|ref|YP_006922603.1|	-	0.024	14.5	0.5	0.045	13.6	0.5	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ThiF	PF00899.21	gi|410670232|ref|YP_006922603.1|	-	0.038	13.4	0.1	0.11	11.8	0.0	1.7	2	1	0	2	2	2	0	ThiF	family
Pyr_redox_3	PF13738.6	gi|410670232|ref|YP_006922603.1|	-	0.038	13.2	0.2	0.13	11.5	0.3	1.8	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_7	PF13241.6	gi|410670232|ref|YP_006922603.1|	-	0.057	13.9	0.1	0.11	12.9	0.1	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
TrkA_N	PF02254.18	gi|410670232|ref|YP_006922603.1|	-	0.068	13.4	0.1	0.2	11.9	0.1	1.8	1	0	0	1	1	1	0	TrkA-N	domain
XdhC_C	PF13478.6	gi|410670232|ref|YP_006922603.1|	-	0.11	13.0	0.1	0.26	11.8	0.1	1.7	1	1	0	1	1	1	0	XdhC	Rossmann	domain
2-Hacid_dh_C	PF02826.19	gi|410670232|ref|YP_006922603.1|	-	0.12	11.7	0.1	0.23	10.8	0.1	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Peptidase_M22	PF00814.25	gi|410670232|ref|YP_006922603.1|	-	0.15	11.8	0.3	0.33	10.6	0.0	1.7	2	0	0	2	2	2	0	Glycoprotease	family
ACT	PF01842.25	gi|410670233|ref|YP_006922604.1|	-	5e-05	23.0	0.5	0.00027	20.6	0.5	2.1	1	1	0	1	1	1	1	ACT	domain
ACT_7	PF13840.6	gi|410670233|ref|YP_006922604.1|	-	0.11	12.3	0.1	0.19	11.6	0.1	1.3	1	0	0	1	1	1	0	ACT	domain
HMGL-like	PF00682.19	gi|410670234|ref|YP_006922605.1|	-	1.2e-35	123.3	0.0	1.8e-35	122.8	0.0	1.2	1	0	0	1	1	1	1	HMGL-like
Iso_dh	PF00180.20	gi|410670235|ref|YP_006922606.1|	-	4.5e-85	285.9	0.0	5.2e-85	285.6	0.0	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
TatD_DNase	PF01026.21	gi|410670236|ref|YP_006922607.1|	-	4e-23	82.1	0.0	5.5e-23	81.7	0.0	1.2	1	0	0	1	1	1	1	TatD	related	DNase
Amidohydro_1	PF01979.20	gi|410670236|ref|YP_006922607.1|	-	0.0026	17.2	0.4	0.11	11.8	0.2	2.4	2	1	0	3	3	3	2	Amidohydrolase	family
DUF4147	PF13660.6	gi|410670237|ref|YP_006922608.1|	-	6.9e-80	267.9	0.1	9.1e-80	267.5	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.13	gi|410670237|ref|YP_006922608.1|	-	1.8e-38	131.1	0.5	3.5e-38	130.2	0.5	1.5	1	0	0	1	1	1	1	MOFRL	family
PBP	PF01161.20	gi|410670238|ref|YP_006922609.1|	-	5.6e-33	114.1	0.0	6.4e-33	113.9	0.0	1.0	1	0	0	1	1	1	1	Phosphatidylethanolamine-binding	protein
RELT	PF12606.8	gi|410670239|ref|YP_006922610.1|	-	0.39	9.7	3.9	0.54	9.3	3.9	1.3	1	0	0	1	1	1	0	Tumour	necrosis	factor	receptor	superfamily	member	19
PspC	PF04024.12	gi|410670240|ref|YP_006922611.1|	-	1.4e-21	76.0	0.5	1.6e-21	75.9	0.5	1.0	1	0	0	1	1	1	1	PspC	domain
HxlR	PF01638.17	gi|410670241|ref|YP_006922612.1|	-	1.2e-24	86.0	0.4	1.4e-24	85.7	0.4	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
DUF2513	PF10711.9	gi|410670241|ref|YP_006922612.1|	-	1.5e-05	25.2	0.1	2.1e-05	24.8	0.1	1.1	1	0	0	1	1	1	1	Hypothetical	protein	(DUF2513)
HTH_20	PF12840.7	gi|410670241|ref|YP_006922612.1|	-	0.00031	20.7	0.0	0.00043	20.3	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_12	PF08461.10	gi|410670241|ref|YP_006922612.1|	-	0.00037	20.4	0.0	0.00058	19.7	0.0	1.4	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
DUF505	PF04458.12	gi|410670241|ref|YP_006922612.1|	-	0.0055	15.1	0.2	0.006	15.0	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
PadR	PF03551.14	gi|410670241|ref|YP_006922612.1|	-	0.0066	16.4	0.0	0.0097	15.9	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_34	PF13601.6	gi|410670241|ref|YP_006922612.1|	-	0.0072	16.5	0.1	0.0091	16.2	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|410670241|ref|YP_006922612.1|	-	0.01	15.8	0.0	0.018	15.0	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
Replic_Relax	PF13814.6	gi|410670241|ref|YP_006922612.1|	-	0.015	15.3	0.0	0.017	15.2	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
MarR	PF01047.22	gi|410670241|ref|YP_006922612.1|	-	0.028	14.4	0.0	0.038	13.9	0.0	1.3	1	0	0	1	1	1	0	MarR	family
DUF4423	PF14394.6	gi|410670241|ref|YP_006922612.1|	-	0.053	13.2	0.1	0.059	13.1	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
MarR_2	PF12802.7	gi|410670241|ref|YP_006922612.1|	-	0.07	13.0	0.0	0.099	12.5	0.0	1.2	1	0	0	1	1	1	0	MarR	family
HTH_24	PF13412.6	gi|410670241|ref|YP_006922612.1|	-	0.11	12.1	0.0	0.21	11.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
NIR_SIR	PF01077.22	gi|410670242|ref|YP_006922613.1|	-	3.6e-28	98.1	0.0	4.9e-28	97.6	0.0	1.2	1	0	0	1	1	1	1	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.17	gi|410670242|ref|YP_006922613.1|	-	2.8e-17	62.3	0.0	5.5e-17	61.4	0.0	1.5	1	0	0	1	1	1	1	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
CGGC	PF08821.11	gi|410670243|ref|YP_006922614.1|	-	2.6e-23	82.2	0.4	2.9e-23	82.1	0.4	1.0	1	0	0	1	1	1	1	CGGC	domain
zf-DNL	PF05180.12	gi|410670243|ref|YP_006922614.1|	-	0.0079	16.1	0.1	0.013	15.4	0.1	1.3	1	0	0	1	1	1	1	DNL	zinc	finger
B12-binding	PF02310.19	gi|410670243|ref|YP_006922614.1|	-	0.044	13.8	0.0	0.044	13.8	0.0	1.1	1	0	0	1	1	1	0	B12	binding	domain
Semialdhyde_dh	PF01118.24	gi|410670243|ref|YP_006922614.1|	-	0.13	12.7	0.0	0.14	12.6	0.0	1.1	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Fer4_21	PF14697.6	gi|410670244|ref|YP_006922615.1|	-	1.3e-09	38.1	7.1	1.3e-09	38.1	7.1	2.4	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|410670244|ref|YP_006922615.1|	-	3.8e-07	29.7	12.2	1.8e-05	24.4	5.1	3.4	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|410670244|ref|YP_006922615.1|	-	1.2e-06	29.0	12.2	0.00067	20.2	0.6	2.8	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410670244|ref|YP_006922615.1|	-	3.4e-06	26.9	15.5	8.8e-06	25.6	3.3	3.4	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|410670244|ref|YP_006922615.1|	-	5e-06	26.6	16.2	0.00015	21.9	5.5	3.1	1	1	2	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410670244|ref|YP_006922615.1|	-	3.7e-05	24.6	13.5	0.015	16.2	1.5	2.8	2	1	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|410670244|ref|YP_006922615.1|	-	9.7e-05	22.2	1.9	9.7e-05	22.2	1.9	4.0	4	0	0	4	4	4	1	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|410670244|ref|YP_006922615.1|	-	0.00014	22.6	9.7	0.11	13.2	9.8	3.1	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_10	PF13237.6	gi|410670244|ref|YP_006922615.1|	-	0.00036	20.6	7.9	0.00036	20.6	7.9	3.0	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410670244|ref|YP_006922615.1|	-	0.0078	16.7	9.8	0.25	11.9	0.3	2.8	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|410670244|ref|YP_006922615.1|	-	0.021	15.7	1.0	0.021	15.7	1.0	3.4	3	1	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_19	PF06902.11	gi|410670244|ref|YP_006922615.1|	-	0.044	13.9	2.0	4.5	7.4	0.1	3.1	2	1	1	3	3	3	0	Divergent	4Fe-4S	mono-cluster
Zn_ribbon_SprT	PF17283.2	gi|410670244|ref|YP_006922615.1|	-	2.7	8.0	8.4	1.8	8.6	0.6	2.7	2	1	0	2	2	2	0	SprT-like	zinc	ribbon	domain
Fer4_13	PF13370.6	gi|410670244|ref|YP_006922615.1|	-	4.6	7.9	11.4	0.72	10.4	2.7	3.0	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
GXGXG	PF01493.19	gi|410670245|ref|YP_006922616.1|	-	4.4e-07	29.7	18.8	3e-05	23.7	8.7	3.6	2	2	1	3	3	3	3	GXGXG	motif
Phosphonate-bd	PF12974.7	gi|410670246|ref|YP_006922617.1|	-	2.6e-41	141.8	0.0	4.3e-41	141.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
HATPase_c	PF02518.26	gi|410670246|ref|YP_006922617.1|	-	1.2e-20	74.1	0.1	2.8e-20	72.9	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
SBP_bac_3	PF00497.20	gi|410670246|ref|YP_006922617.1|	-	8.1e-07	28.7	0.0	5e-05	22.8	0.0	2.3	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	proteins,	family	3
NMT1	PF09084.11	gi|410670246|ref|YP_006922617.1|	-	0.0008	19.4	0.1	0.0032	17.4	0.1	1.9	1	1	1	2	2	2	1	NMT1/THI5	like
HisKA	PF00512.25	gi|410670246|ref|YP_006922617.1|	-	0.0021	18.1	0.0	0.0046	17.0	0.0	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|410670246|ref|YP_006922617.1|	-	0.0033	17.4	0.0	0.0062	16.5	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
DUF4549	PF15082.6	gi|410670246|ref|YP_006922617.1|	-	0.067	13.0	0.4	0.12	12.1	0.4	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4549)
DLP_helical	PF18709.1	gi|410670246|ref|YP_006922617.1|	-	0.38	9.9	3.8	0.33	10.1	1.3	1.9	2	0	0	2	2	2	0	Dynamin-like	helical	domain
PK	PF00224.21	gi|410670247|ref|YP_006922618.1|	-	5.8e-119	397.1	4.0	7.2e-119	396.7	4.0	1.1	1	0	0	1	1	1	1	Pyruvate	kinase,	barrel	domain
PK_C	PF02887.16	gi|410670247|ref|YP_006922618.1|	-	1.8e-21	76.5	0.0	3.3e-20	72.4	0.0	2.6	2	0	0	2	2	2	1	Pyruvate	kinase,	alpha/beta	domain
HpcH_HpaI	PF03328.14	gi|410670247|ref|YP_006922618.1|	-	0.001	18.2	0.3	0.0051	16.0	0.1	2.0	2	0	0	2	2	2	1	HpcH/HpaI	aldolase/citrate	lyase	family
GRIM-19	PF06212.12	gi|410670247|ref|YP_006922618.1|	-	0.029	14.3	0.0	0.2	11.6	0.0	2.2	2	0	0	2	2	2	0	GRIM-19	protein
Tht1	PF04163.12	gi|410670247|ref|YP_006922618.1|	-	0.093	11.5	0.2	1.3	7.7	0.0	2.0	2	0	0	2	2	2	0	Tht1-like	nuclear	fusion	protein
FAD_binding_4	PF01565.23	gi|410670249|ref|YP_006922620.1|	-	6.3e-35	119.9	0.2	1.5e-34	118.7	0.2	1.7	1	0	0	1	1	1	1	FAD	binding	domain
CCG	PF02754.16	gi|410670249|ref|YP_006922620.1|	-	8.7e-35	118.8	2.8	1.3e-16	60.6	0.2	2.7	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4_17	PF13534.6	gi|410670249|ref|YP_006922620.1|	-	1.1e-08	35.4	6.5	1.1e-08	35.4	6.5	2.2	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|410670249|ref|YP_006922620.1|	-	4.9e-06	26.9	6.1	1.4e-05	25.5	6.1	1.8	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|410670249|ref|YP_006922620.1|	-	0.0003	21.3	3.8	0.00094	19.7	3.8	2.0	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410670249|ref|YP_006922620.1|	-	0.0018	18.4	7.9	0.0021	18.2	5.9	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
FAD-oxidase_C	PF02913.19	gi|410670249|ref|YP_006922620.1|	-	0.071	12.7	0.0	0.19	11.4	0.0	1.8	1	1	0	1	1	1	0	FAD	linked	oxidases,	C-terminal	domain
Fer4_10	PF13237.6	gi|410670249|ref|YP_006922620.1|	-	0.72	10.0	12.2	0.83	9.8	8.0	2.8	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
Flavodoxin_3	PF12641.7	gi|410670251|ref|YP_006922622.1|	-	7.5e-20	71.2	0.0	9.1e-20	71.0	0.0	1.1	1	0	0	1	1	1	1	Flavodoxin	domain
Flavodoxin_5	PF12724.7	gi|410670251|ref|YP_006922622.1|	-	1.3e-09	38.4	0.0	1.7e-09	38.1	0.0	1.2	1	0	0	1	1	1	1	Flavodoxin	domain
Flavodoxin_1	PF00258.25	gi|410670251|ref|YP_006922622.1|	-	0.00037	20.7	0.0	0.00073	19.8	0.0	1.4	1	1	0	1	1	1	1	Flavodoxin
Flavodoxin_4	PF12682.7	gi|410670251|ref|YP_006922622.1|	-	0.0027	17.4	0.1	1.4	8.6	0.0	2.2	1	1	1	2	2	2	2	Flavodoxin
PspA_IM30	PF04012.12	gi|410670253|ref|YP_006922624.1|	-	1.3e-29	103.4	23.3	1.5e-29	103.2	23.3	1.0	1	0	0	1	1	1	1	PspA/IM30	family
DUF1664	PF07889.12	gi|410670253|ref|YP_006922624.1|	-	0.0051	16.8	14.6	0.38	10.8	4.5	3.1	1	1	3	4	4	4	4	Protein	of	unknown	function	(DUF1664)
Flagellin_C	PF00700.21	gi|410670253|ref|YP_006922624.1|	-	0.0058	17.0	12.3	0.48	10.8	0.1	3.7	3	1	1	4	4	4	2	Bacterial	flagellin	C-terminal	helical	region
YabA	PF06156.13	gi|410670253|ref|YP_006922624.1|	-	0.0097	16.5	15.7	0.52	11.0	4.9	2.9	1	1	2	3	3	3	2	Initiation	control	protein	YabA
NOG1	PF06858.14	gi|410670253|ref|YP_006922624.1|	-	0.016	15.0	0.0	0.066	13.0	0.0	2.1	2	0	0	2	2	2	0	Nucleolar	GTP-binding	protein	1	(NOG1)
Filament	PF00038.21	gi|410670253|ref|YP_006922624.1|	-	0.078	12.6	22.1	0.35	10.4	6.8	2.8	1	1	1	2	2	2	0	Intermediate	filament	protein
DUF1910	PF08928.10	gi|410670253|ref|YP_006922624.1|	-	0.097	12.7	3.9	0.52	10.3	3.9	2.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1910)
FapA	PF03961.13	gi|410670253|ref|YP_006922624.1|	-	0.15	10.6	15.4	0.089	11.4	10.8	2.0	1	1	1	2	2	2	0	Flagellar	Assembly	Protein	A
Spc7	PF08317.11	gi|410670253|ref|YP_006922624.1|	-	0.17	10.7	23.7	0.12	11.3	8.3	2.1	1	1	1	2	2	2	0	Spc7	kinetochore	protein
Baculo_PEP_C	PF04513.12	gi|410670253|ref|YP_006922624.1|	-	0.25	11.4	10.9	4.5	7.3	5.6	2.8	1	1	3	4	4	4	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Exonuc_VII_L	PF02601.15	gi|410670253|ref|YP_006922624.1|	-	0.27	10.8	16.0	0.6	9.6	16.0	1.6	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
DivIC	PF04977.15	gi|410670253|ref|YP_006922624.1|	-	0.37	10.6	17.4	0.53	10.1	2.2	3.5	3	0	0	3	3	3	0	Septum	formation	initiator
Sec34	PF04136.15	gi|410670253|ref|YP_006922624.1|	-	0.46	10.4	11.5	0.38	10.6	1.3	2.9	1	1	2	3	3	3	0	Sec34-like	family
DUF4407	PF14362.6	gi|410670253|ref|YP_006922624.1|	-	0.59	9.4	19.1	0.85	8.9	17.8	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
DUF3450	PF11932.8	gi|410670253|ref|YP_006922624.1|	-	0.62	9.3	21.6	0.48	9.7	6.2	2.7	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
COG2	PF06148.11	gi|410670253|ref|YP_006922624.1|	-	0.63	10.1	13.5	5.3	7.1	8.0	3.4	1	1	2	3	3	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Snapin_Pallidin	PF14712.6	gi|410670253|ref|YP_006922624.1|	-	0.64	10.5	19.8	0.45	11.0	4.2	3.5	2	1	0	3	3	2	0	Snapin/Pallidin
APG6_N	PF17675.1	gi|410670253|ref|YP_006922624.1|	-	0.64	10.5	26.0	0.45	11.1	19.1	3.1	1	1	1	2	2	2	0	Apg6	coiled-coil	region
5_nucleotid	PF05761.14	gi|410670253|ref|YP_006922624.1|	-	0.74	8.6	11.2	0.98	8.2	1.4	2.1	2	0	0	2	2	2	0	5'	nucleotidase	family
COG5	PF10392.9	gi|410670253|ref|YP_006922624.1|	-	1.1	9.4	10.1	1.3	9.2	7.6	2.4	1	1	1	2	2	2	0	Golgi	transport	complex	subunit	5
Snf7	PF03357.21	gi|410670253|ref|YP_006922624.1|	-	1.2	8.8	25.4	1.6	8.3	21.1	2.9	1	1	1	2	2	2	0	Snf7
Allexi_40kDa	PF05549.11	gi|410670253|ref|YP_006922624.1|	-	1.3	8.4	8.0	1.6	8.2	5.5	2.2	1	1	2	3	3	3	0	Allexivirus	40kDa	protein
CENP-F_leu_zip	PF10473.9	gi|410670253|ref|YP_006922624.1|	-	1.4	8.9	23.7	0.42	10.6	9.3	2.7	1	1	1	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF5082	PF16888.5	gi|410670253|ref|YP_006922624.1|	-	1.6	9.0	18.5	1.9	8.8	5.9	3.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5082)
FlxA	PF14282.6	gi|410670253|ref|YP_006922624.1|	-	1.8	8.6	20.6	0.3	11.1	14.5	2.7	1	1	0	1	1	1	0	FlxA-like	protein
ADIP	PF11559.8	gi|410670253|ref|YP_006922624.1|	-	1.9	8.5	21.1	0.15	12.2	4.3	3.0	2	1	0	3	3	3	0	Afadin-	and	alpha	-actinin-Binding
DAP_B	PF07930.12	gi|410670253|ref|YP_006922624.1|	-	2.3	8.1	8.0	7.2	6.5	0.6	2.2	1	1	0	2	2	2	0	D-aminopeptidase,	domain	B
DUF2937	PF11157.8	gi|410670253|ref|YP_006922624.1|	-	4.1	7.1	7.7	4.4	7.0	6.2	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2937)
DUF1993	PF09351.10	gi|410670253|ref|YP_006922624.1|	-	4.1	7.5	8.3	3.3	7.8	6.3	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1993)
Fmp27_WPPW	PF10359.9	gi|410670253|ref|YP_006922624.1|	-	4.7	6.0	18.2	0.092	11.6	6.4	2.4	1	1	1	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
Fib_alpha	PF08702.10	gi|410670253|ref|YP_006922624.1|	-	5.5	7.2	16.0	2.1	8.5	3.0	2.3	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
GCN5L1	PF06320.13	gi|410670253|ref|YP_006922624.1|	-	5.9	7.1	15.1	1.9	8.7	3.0	2.9	1	1	2	3	3	3	0	GCN5-like	protein	1	(GCN5L1)
DUF724	PF05266.14	gi|410670253|ref|YP_006922624.1|	-	6.9	6.4	21.0	2	8.2	4.0	2.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF724)
Prominin	PF05478.11	gi|410670253|ref|YP_006922624.1|	-	9.8	4.0	10.8	20	3.0	10.7	1.5	1	1	0	1	1	1	0	Prominin
DUF4075	PF13294.6	gi|410670254|ref|YP_006922625.1|	-	0.12	12.5	0.2	0.93	9.7	0.1	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4075)
Peptidase_M48	PF01435.18	gi|410670256|ref|YP_006922627.1|	-	4.3e-42	144.1	0.0	7.3e-42	143.4	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|410670256|ref|YP_006922627.1|	-	1.4e-06	27.7	0.0	5.1e-06	25.9	0.0	1.9	2	0	0	2	2	2	1	BlaR1	peptidase	M56
DUF2417	PF10329.9	gi|410670256|ref|YP_006922627.1|	-	0.0057	16.1	2.3	0.037	13.4	0.2	2.1	2	0	0	2	2	2	1	Region	of	unknown	function	(DUF2417)
DUF1129	PF06570.11	gi|410670256|ref|YP_006922627.1|	-	0.024	14.1	9.4	0.065	12.7	0.5	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1129)
DUF5531	PF17671.1	gi|410670256|ref|YP_006922627.1|	-	0.067	13.1	0.0	0.2	11.6	0.0	1.7	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5531)
DUF4157	PF13699.6	gi|410670256|ref|YP_006922627.1|	-	0.19	12.0	0.0	0.36	11.1	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4157)
Pex24p	PF06398.11	gi|410670256|ref|YP_006922627.1|	-	0.3	10.0	2.4	0.62	9.0	2.4	1.6	1	1	0	1	1	1	0	Integral	peroxisomal	membrane	peroxin
UvrA_inter	PF17760.1	gi|410670257|ref|YP_006922628.1|	-	2.7e-38	130.4	0.5	6.6e-38	129.1	0.5	1.7	1	0	0	1	1	1	1	UvrA	interaction	domain
UvrA_DNA-bind	PF17755.1	gi|410670257|ref|YP_006922628.1|	-	1.4e-33	115.5	0.0	5e-32	110.5	0.0	2.8	2	0	0	2	2	2	1	UvrA	DNA-binding	domain
ABC_tran	PF00005.27	gi|410670257|ref|YP_006922628.1|	-	2.5e-20	73.4	0.5	9.3e-09	35.9	0.1	4.4	3	1	0	3	3	3	3	ABC	transporter
SMC_N	PF02463.19	gi|410670257|ref|YP_006922628.1|	-	1.2e-10	41.2	0.1	0.013	14.9	0.0	4.1	4	0	0	4	4	4	3	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|410670257|ref|YP_006922628.1|	-	2.2e-08	34.7	0.0	0.0047	17.3	0.0	3.2	3	0	0	3	3	3	2	AAA	ATPase	domain
AAA_29	PF13555.6	gi|410670257|ref|YP_006922628.1|	-	1.2e-06	28.1	0.4	0.033	13.9	0.1	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|410670257|ref|YP_006922628.1|	-	4.4e-06	27.0	0.5	0.098	12.9	0.0	3.7	4	0	0	4	4	4	2	AAA	domain
RsgA_GTPase	PF03193.16	gi|410670257|ref|YP_006922628.1|	-	1.4e-05	25.0	0.3	0.21	11.5	0.0	2.4	2	0	0	2	2	2	2	RsgA	GTPase
AAA_18	PF13238.6	gi|410670257|ref|YP_006922628.1|	-	2.7e-05	24.7	0.1	0.1	13.1	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
AAA_23	PF13476.6	gi|410670257|ref|YP_006922628.1|	-	7e-05	23.4	0.4	0.17	12.4	0.1	2.7	2	0	0	2	2	2	2	AAA	domain
DnaJ_CXXCXGXG	PF00684.19	gi|410670257|ref|YP_006922628.1|	-	7.1e-05	23.1	8.5	0.16	12.4	0.2	3.8	4	0	0	4	4	3	2	DnaJ	central	domain
APS_kinase	PF01583.20	gi|410670257|ref|YP_006922628.1|	-	9.5e-05	22.3	0.1	0.45	10.4	0.0	2.7	2	0	0	2	2	2	2	Adenylylsulphate	kinase
BCA_ABC_TP_C	PF12399.8	gi|410670257|ref|YP_006922628.1|	-	0.00013	21.8	2.1	0.023	14.6	0.4	2.5	2	0	0	2	2	2	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_33	PF13671.6	gi|410670257|ref|YP_006922628.1|	-	0.00014	22.0	0.0	0.42	10.8	0.0	3.2	4	0	0	4	4	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|410670257|ref|YP_006922628.1|	-	0.00025	20.9	0.0	0.0095	15.7	0.0	2.6	3	0	0	3	3	3	1	Viral	(Superfamily	1)	RNA	helicase
T2SSE	PF00437.20	gi|410670257|ref|YP_006922628.1|	-	0.00037	19.6	0.2	0.27	10.3	0.0	2.5	2	0	0	2	2	2	2	Type	II/IV	secretion	system	protein
AAA_14	PF13173.6	gi|410670257|ref|YP_006922628.1|	-	0.00047	20.2	0.1	4	7.5	0.0	3.5	3	0	0	3	3	3	1	AAA	domain
AAA_24	PF13479.6	gi|410670257|ref|YP_006922628.1|	-	0.00079	19.2	1.1	0.6	9.8	0.0	3.7	4	0	0	4	4	3	1	AAA	domain
MMR_HSR1	PF01926.23	gi|410670257|ref|YP_006922628.1|	-	0.0009	19.3	0.4	0.09	12.9	0.0	3.0	3	0	0	3	3	2	1	50S	ribosome-binding	GTPase
cobW	PF02492.19	gi|410670257|ref|YP_006922628.1|	-	0.0011	18.6	0.4	0.12	11.9	0.1	2.6	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
ATPase_2	PF01637.18	gi|410670257|ref|YP_006922628.1|	-	0.0013	18.6	0.1	1.7	8.5	0.0	3.0	3	0	0	3	3	3	1	ATPase	domain	predominantly	from	Archaea
AAA_25	PF13481.6	gi|410670257|ref|YP_006922628.1|	-	0.0015	18.1	0.3	0.47	10.0	0.0	3.0	3	0	0	3	3	3	1	AAA	domain
AAA_21	PF13304.6	gi|410670257|ref|YP_006922628.1|	-	0.0023	17.8	11.3	0.0075	16.1	0.0	4.1	4	0	0	4	4	4	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Zn-ribbon_8	PF09723.10	gi|410670257|ref|YP_006922628.1|	-	0.0023	18.0	12.9	0.046	13.8	1.6	4.4	4	0	0	4	4	4	1	Zinc	ribbon	domain
PRK	PF00485.18	gi|410670257|ref|YP_006922628.1|	-	0.0039	17.0	0.1	0.39	10.4	0.0	2.5	2	0	0	2	2	2	1	Phosphoribulokinase	/	Uridine	kinase	family
DUF2075	PF09848.9	gi|410670257|ref|YP_006922628.1|	-	0.0043	16.4	0.0	2.8	7.1	0.0	2.3	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
NACHT	PF05729.12	gi|410670257|ref|YP_006922628.1|	-	0.0062	16.5	0.0	1.8	8.5	0.0	2.6	2	0	0	2	2	2	1	NACHT	domain
NB-ARC	PF00931.22	gi|410670257|ref|YP_006922628.1|	-	0.0075	15.5	0.1	1.5	8.0	0.0	3.3	4	0	0	4	4	3	1	NB-ARC	domain
Zeta_toxin	PF06414.12	gi|410670257|ref|YP_006922628.1|	-	0.017	14.4	0.0	5.5	6.2	0.0	2.6	2	0	0	2	2	2	0	Zeta	toxin
KAP_NTPase	PF07693.14	gi|410670257|ref|YP_006922628.1|	-	0.018	14.3	0.1	15	4.7	0.0	3.8	4	0	0	4	4	4	0	KAP	family	P-loop	domain
NTPase_1	PF03266.15	gi|410670257|ref|YP_006922628.1|	-	0.019	14.9	0.4	0.65	9.9	0.1	3.0	2	0	0	2	2	2	0	NTPase
AAA_30	PF13604.6	gi|410670257|ref|YP_006922628.1|	-	0.022	14.5	0.0	7.6	6.2	0.0	3.2	3	0	0	3	3	3	0	AAA	domain
ATPase	PF06745.13	gi|410670257|ref|YP_006922628.1|	-	0.026	13.9	0.1	6.4	6.0	0.0	2.6	2	0	0	2	2	2	0	KaiC
AAA_7	PF12775.7	gi|410670257|ref|YP_006922628.1|	-	0.026	14.1	0.1	5.3	6.5	0.0	2.8	3	0	0	3	3	3	0	P-loop	containing	dynein	motor	region
RNA_helicase	PF00910.22	gi|410670257|ref|YP_006922628.1|	-	0.034	14.5	0.0	2.6	8.5	0.0	2.6	2	0	0	2	2	2	0	RNA	helicase
MeaB	PF03308.16	gi|410670257|ref|YP_006922628.1|	-	0.035	13.1	0.2	0.82	8.6	0.0	2.7	3	0	0	3	3	3	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_28	PF13521.6	gi|410670257|ref|YP_006922628.1|	-	0.07	13.4	0.1	7	6.9	0.0	2.7	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.6	gi|410670257|ref|YP_006922628.1|	-	0.077	12.7	1.6	3	7.5	0.0	3.5	4	0	0	4	4	4	0	AAA	ATPase	domain
dNK	PF01712.19	gi|410670257|ref|YP_006922628.1|	-	0.079	12.8	0.1	1.5	8.7	0.0	2.6	3	0	0	3	3	3	0	Deoxynucleoside	kinase
Myosin_N	PF02736.19	gi|410670257|ref|YP_006922628.1|	-	0.16	11.8	0.2	0.7	9.8	0.2	2.1	1	0	0	1	1	1	0	Myosin	N-terminal	SH3-like	domain
DUF463	PF04317.12	gi|410670257|ref|YP_006922628.1|	-	0.47	9.3	0.9	2.6	6.9	0.0	2.0	2	0	0	2	2	2	0	YcjX-like	family,	DUF463
Zn_Tnp_IS91	PF14319.6	gi|410670257|ref|YP_006922628.1|	-	0.5	10.4	1.4	8.4	6.5	0.0	2.9	3	0	0	3	3	3	0	Transposase	zinc-binding	domain
Anti-TRAP	PF15777.5	gi|410670257|ref|YP_006922628.1|	-	1.2	9.1	9.8	22	5.1	0.0	4.2	4	1	0	4	4	4	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
TF_Zn_Ribbon	PF08271.12	gi|410670257|ref|YP_006922628.1|	-	6.3	6.4	10.8	4.3	6.9	0.1	4.4	4	0	0	4	4	4	0	TFIIB	zinc-binding
DUF2173	PF09941.9	gi|410670258|ref|YP_006922629.1|	-	2.2e-26	92.2	0.2	2.4e-26	92.1	0.2	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2173)
Herpes_IE1	PF07340.11	gi|410670258|ref|YP_006922629.1|	-	0.0075	15.2	0.0	0.0092	14.9	0.0	1.1	1	0	0	1	1	1	1	Cytomegalovirus	IE1	protein
Rubrerythrin	PF02915.17	gi|410670259|ref|YP_006922630.1|	-	9.8e-26	90.8	6.1	3.3e-24	85.9	6.1	2.0	1	1	0	1	1	1	1	Rubrerythrin
Ferritin	PF00210.24	gi|410670259|ref|YP_006922630.1|	-	0.0003	20.8	1.8	0.0005	20.0	1.8	1.5	1	1	0	1	1	1	1	Ferritin-like	domain
RecR	PF02132.15	gi|410670259|ref|YP_006922630.1|	-	0.012	15.2	1.1	0.028	14.0	1.1	1.5	1	0	0	1	1	1	0	RecR	protein
Zn-ribbon_8	PF09723.10	gi|410670259|ref|YP_006922630.1|	-	0.073	13.2	3.6	0.23	11.6	3.6	1.8	1	0	0	1	1	1	0	Zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|410670259|ref|YP_006922630.1|	-	0.077	12.7	3.4	0.16	11.7	3.4	1.5	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
zf-HIT	PF04438.16	gi|410670259|ref|YP_006922630.1|	-	0.22	11.4	2.7	2.1	8.3	0.2	2.2	2	0	0	2	2	2	0	HIT	zinc	finger
zf-ribbon_3	PF13248.6	gi|410670259|ref|YP_006922630.1|	-	0.57	9.7	7.3	1.7	8.1	1.6	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.10	gi|410670259|ref|YP_006922630.1|	-	2.6	7.9	5.4	0.44	10.3	0.4	2.0	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
DDE_Tnp_IS1	PF03400.13	gi|410670260|ref|YP_006922631.1|	-	1.2e-08	35.4	0.1	1.3e-08	35.3	0.1	1.0	1	0	0	1	1	1	1	IS1	transposase
TERT_thumb	PF17984.1	gi|410670260|ref|YP_006922631.1|	-	0.022	14.6	0.1	0.022	14.6	0.1	1.1	1	0	0	1	1	1	0	Telomerase	reverse	transcriptase	thumb	DNA	binding	domain
EPO_TPO	PF00758.18	gi|410670260|ref|YP_006922631.1|	-	0.068	13.2	0.0	0.084	12.9	0.0	1.1	1	0	0	1	1	1	0	Erythropoietin/thrombopoietin
Ferritin	PF00210.24	gi|410670261|ref|YP_006922632.1|	-	2.8e-33	114.8	7.1	3.3e-33	114.6	7.1	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
DUF892	PF05974.12	gi|410670261|ref|YP_006922632.1|	-	0.0056	16.7	0.1	0.0056	16.7	0.1	1.7	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF892)
Phenol_Hydrox	PF02332.18	gi|410670261|ref|YP_006922632.1|	-	0.0061	16.1	0.0	0.014	15.0	0.0	1.6	1	0	0	1	1	1	1	Methane/Phenol/Toluene	Hydroxylase
Rubrerythrin	PF02915.17	gi|410670261|ref|YP_006922632.1|	-	0.0066	16.9	4.3	0.017	15.6	4.3	1.7	1	1	0	1	1	1	1	Rubrerythrin
COQ7	PF03232.13	gi|410670261|ref|YP_006922632.1|	-	0.0072	16.1	3.7	0.048	13.4	0.2	2.1	2	0	0	2	2	2	1	Ubiquinone	biosynthesis	protein	COQ7
Amidase	PF01425.21	gi|410670261|ref|YP_006922632.1|	-	0.24	10.3	0.1	0.29	10.1	0.1	1.0	1	0	0	1	1	1	0	Amidase
Lyase_1	PF00206.20	gi|410670262|ref|YP_006922633.1|	-	7.2e-55	186.6	2.5	1.2e-54	185.9	0.7	1.8	2	0	0	2	2	2	1	Lyase
ADSL_C	PF10397.9	gi|410670262|ref|YP_006922633.1|	-	2.7e-20	72.7	0.4	7.3e-20	71.3	0.0	2.0	2	0	0	2	2	2	1	Adenylosuccinate	lyase	C-terminus
DUF3697	PF12478.8	gi|410670263|ref|YP_006922634.1|	-	0.039	14.1	0.0	0.095	12.8	0.0	1.7	1	0	0	1	1	1	0	Ubiquitin-associated	protein	2
DDE_3	PF13358.6	gi|410670264|ref|YP_006922635.1|	-	6.1e-23	81.2	0.1	6.1e-23	81.2	0.1	1.4	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
DDE_1	PF03184.19	gi|410670264|ref|YP_006922635.1|	-	6e-08	32.5	0.2	7.4e-08	32.2	0.2	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|410670264|ref|YP_006922635.1|	-	1.2e-05	25.5	0.0	1.8e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	Integrase	core	domain
DDE_Tnp_ISAZ013	PF07592.11	gi|410670264|ref|YP_006922635.1|	-	0.0076	15.3	0.1	0.01	14.9	0.1	1.2	1	0	0	1	1	1	1	Rhodopirellula	transposase	DDE	domain
HTH_32	PF13565.6	gi|410670265|ref|YP_006922636.1|	-	3.3e-12	46.9	0.0	5.2e-12	46.2	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_33	PF13592.6	gi|410670265|ref|YP_006922636.1|	-	2.1e-08	33.7	0.0	4.7e-08	32.6	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_29	PF13551.6	gi|410670265|ref|YP_006922636.1|	-	1.5e-07	31.3	0.0	3e-07	30.4	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|410670265|ref|YP_006922636.1|	-	2.3e-06	27.3	0.1	1.1e-05	25.1	0.0	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_ABP1_N	PF18107.1	gi|410670265|ref|YP_006922636.1|	-	0.0031	17.2	0.1	0.0053	16.4	0.1	1.3	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
HTH_28	PF13518.6	gi|410670265|ref|YP_006922636.1|	-	0.0041	17.2	0.0	0.0094	16.1	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Fungus-induced	PF10917.8	gi|410670266|ref|YP_006922637.1|	-	0.14	12.5	1.1	0.31	11.4	1.1	1.5	1	0	0	1	1	1	0	Fungus-induced	protein
Ammonium_transp	PF00909.21	gi|410670267|ref|YP_006922638.1|	-	2.5e-127	424.9	39.5	2.8e-127	424.7	39.5	1.0	1	0	0	1	1	1	1	Ammonium	Transporter	Family
TMEM141	PF15110.6	gi|410670267|ref|YP_006922638.1|	-	0.97	10.1	4.1	0.95	10.1	0.1	2.6	3	0	0	3	3	3	0	TMEM141	protein	family
P-II	PF00543.22	gi|410670268|ref|YP_006922639.1|	-	3.9e-35	120.5	1.8	4.4e-35	120.4	1.8	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
PHP	PF02811.19	gi|410670269|ref|YP_006922640.1|	-	0.014	15.7	0.0	0.019	15.3	0.0	1.3	1	1	0	1	1	1	0	PHP	domain
PilZ	PF07238.14	gi|410670270|ref|YP_006922641.1|	-	0.044	14.1	0.0	0.41	11.0	0.0	2.0	1	1	1	2	2	2	0	PilZ	domain
GATase	PF00117.28	gi|410670271|ref|YP_006922642.1|	-	6.8e-17	61.9	0.0	9.4e-17	61.4	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|410670271|ref|YP_006922642.1|	-	4.1e-05	23.3	0.0	9.8e-05	22.0	0.0	1.6	2	0	0	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_C26	PF07722.13	gi|410670271|ref|YP_006922642.1|	-	8.2e-05	22.5	0.0	0.009	15.8	0.0	2.2	2	0	0	2	2	2	2	Peptidase	C26
DJ-1_PfpI	PF01965.24	gi|410670271|ref|YP_006922642.1|	-	0.00011	22.0	0.0	0.00018	21.4	0.0	1.2	1	0	0	1	1	1	1	DJ-1/PfpI	family
DUF2124	PF09897.9	gi|410670271|ref|YP_006922642.1|	-	0.028	14.3	0.0	0.28	11.1	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2124)
MMR_HSR1	PF01926.23	gi|410670273|ref|YP_006922644.1|	-	1.1e-16	61.0	0.7	2e-13	50.4	0.1	2.6	2	1	0	2	2	2	2	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|410670273|ref|YP_006922644.1|	-	9.8e-11	41.4	2.6	0.0002	20.9	0.8	3.0	2	1	0	2	2	2	2	Ferrous	iron	transport	protein	B
RsgA_GTPase	PF03193.16	gi|410670273|ref|YP_006922644.1|	-	7.4e-08	32.5	0.5	2e-07	31.1	0.5	1.7	1	1	0	1	1	1	1	RsgA	GTPase
GTP_EFTU	PF00009.27	gi|410670273|ref|YP_006922644.1|	-	4.7e-05	23.0	0.4	0.011	15.3	0.1	2.3	1	1	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
Dynamin_N	PF00350.23	gi|410670273|ref|YP_006922644.1|	-	0.00038	20.6	1.9	4.2	7.4	0.1	3.2	2	1	1	3	3	3	2	Dynamin	family
AIG1	PF04548.16	gi|410670273|ref|YP_006922644.1|	-	0.0006	19.2	0.0	0.001	18.4	0.0	1.4	1	0	0	1	1	1	1	AIG1	family
MMR_HSR1_Xtn	PF16897.5	gi|410670273|ref|YP_006922644.1|	-	0.012	15.6	0.1	0.023	14.7	0.1	1.5	1	0	0	1	1	1	0	C-terminal	region	of	MMR_HSR1	domain
ATP_bind_1	PF03029.17	gi|410670273|ref|YP_006922644.1|	-	0.086	12.6	0.4	0.22	11.3	0.0	1.9	3	0	0	3	3	3	0	Conserved	hypothetical	ATP	binding	protein
cobW	PF02492.19	gi|410670273|ref|YP_006922644.1|	-	0.21	11.1	1.4	0.27	10.8	0.2	1.7	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Spore_IV_A	PF09547.10	gi|410670273|ref|YP_006922644.1|	-	0.22	10.4	2.4	3.9	6.3	0.0	2.6	3	0	0	3	3	3	0	Stage	IV	sporulation	protein	A	(spore_IV_A)
Nitroreductase	PF00881.24	gi|410670274|ref|YP_006922645.1|	-	1.8e-30	106.2	0.0	2.2e-30	106.0	0.0	1.1	1	0	0	1	1	1	1	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|410670274|ref|YP_006922645.1|	-	3e-08	33.5	1.6	0.0068	16.0	0.0	3.2	2	1	1	3	3	3	3	Putative	TM	nitroreductase
Fer4	PF00037.27	gi|410670274|ref|YP_006922645.1|	-	4.3e-08	32.6	16.4	0.00035	20.2	4.0	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|410670274|ref|YP_006922645.1|	-	5.9e-08	33.2	5.1	0.00093	19.7	0.2	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410670274|ref|YP_006922645.1|	-	1.1e-07	31.6	12.4	0.00087	19.3	1.7	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|410670274|ref|YP_006922645.1|	-	3e-07	31.3	4.5	0.00018	22.3	0.1	2.4	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|410670274|ref|YP_006922645.1|	-	4.9e-07	29.8	8.5	1e-06	28.8	8.5	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410670274|ref|YP_006922645.1|	-	2.4e-06	27.6	10.6	0.00018	21.5	13.2	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410670274|ref|YP_006922645.1|	-	0.0005	20.4	10.8	0.014	15.8	1.1	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|410670274|ref|YP_006922645.1|	-	0.00057	19.8	13.5	0.05	13.7	3.3	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410670274|ref|YP_006922645.1|	-	0.0017	18.5	8.3	0.0044	17.1	8.3	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|410670274|ref|YP_006922645.1|	-	0.0029	18.1	7.9	0.052	14.1	0.4	2.4	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_17	PF13534.6	gi|410670274|ref|YP_006922645.1|	-	0.022	15.3	11.5	0.44	11.1	3.0	2.5	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|410670274|ref|YP_006922645.1|	-	0.075	13.9	4.1	2.3	9.1	0.1	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|410670274|ref|YP_006922645.1|	-	0.085	13.3	12.0	21	5.6	12.4	2.5	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|410670274|ref|YP_006922645.1|	-	0.18	12.6	4.0	1.4	9.8	0.4	2.5	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.7	gi|410670274|ref|YP_006922645.1|	-	0.35	11.9	16.2	0.28	12.2	5.1	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|410670274|ref|YP_006922645.1|	-	3	8.1	5.9	15	5.8	0.7	2.6	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
FMN_red	PF03358.15	gi|410670275|ref|YP_006922646.1|	-	1.1e-28	100.0	0.0	1.4e-28	99.6	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|410670275|ref|YP_006922646.1|	-	5.7e-12	45.8	0.0	7.1e-12	45.5	0.0	1.1	1	0	0	1	1	1	1	Flavodoxin-like	fold
DZR	PF12773.7	gi|410670278|ref|YP_006922649.1|	-	0.0024	17.8	15.2	0.0036	17.3	3.5	3.3	1	1	2	3	3	3	3	Double	zinc	ribbon
FYVE_2	PF02318.16	gi|410670278|ref|YP_006922649.1|	-	0.024	14.9	19.8	0.074	13.3	6.0	2.5	1	1	1	2	2	2	0	FYVE-type	zinc	finger
zf-C3HC4_3	PF13920.6	gi|410670278|ref|YP_006922649.1|	-	0.077	12.9	1.0	0.077	12.9	1.0	3.9	3	2	0	3	3	3	0	Zinc	finger,	C3HC4	type	(RING	finger)
IBR	PF01485.21	gi|410670278|ref|YP_006922649.1|	-	1.6	9.1	23.5	0.32	11.3	11.0	3.3	1	1	2	3	3	3	0	IBR	domain,	a	half	RING-finger	domain
YdjO	PF14169.6	gi|410670278|ref|YP_006922649.1|	-	10	6.0	13.2	0.51	10.1	2.1	3.0	3	0	0	3	3	3	0	Cold-inducible	protein	YdjO
Transposase_mut	PF00872.18	gi|410670279|ref|YP_006922650.1|	-	9.1e-114	380.3	4.4	1.1e-113	380.0	4.4	1.0	1	0	0	1	1	1	1	Transposase,	Mutator	family
MULE	PF10551.9	gi|410670279|ref|YP_006922650.1|	-	1.3e-10	41.5	0.0	3.3e-10	40.2	0.0	1.7	1	0	0	1	1	1	1	MULE	transposase	domain
Sigma54_CBD	PF04963.13	gi|410670279|ref|YP_006922650.1|	-	0.023	14.6	1.0	2.8	7.8	0.1	2.3	2	0	0	2	2	2	0	Sigma-54	factor,	core	binding	domain
RbsD_FucU	PF05025.13	gi|410670279|ref|YP_006922650.1|	-	0.028	14.9	0.3	0.2	12.1	0.0	2.2	2	0	0	2	2	2	0	RbsD	/	FucU	transport	protein	family
EcsC	PF12787.7	gi|410670279|ref|YP_006922650.1|	-	0.17	11.5	1.1	0.81	9.3	0.4	2.1	2	0	0	2	2	2	0	EcsC	protein	family
Hydrolase_3	PF08282.12	gi|410670279|ref|YP_006922650.1|	-	0.77	9.4	3.4	0.4	10.4	1.0	1.7	2	1	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
DZR	PF12773.7	gi|410670280|ref|YP_006922651.1|	-	8.7e-06	25.7	7.1	0.0011	19.0	0.5	2.4	1	1	1	2	2	2	2	Double	zinc	ribbon
FYVE	PF01363.21	gi|410670280|ref|YP_006922651.1|	-	0.00061	19.9	9.5	0.0035	17.4	9.5	2.0	1	1	0	1	1	1	1	FYVE	zinc	finger
zinc_ribbon_2	PF13240.6	gi|410670280|ref|YP_006922651.1|	-	0.004	16.8	0.4	0.004	16.8	0.4	3.9	3	1	1	4	4	3	1	zinc-ribbon	domain
IBR	PF01485.21	gi|410670280|ref|YP_006922651.1|	-	0.019	15.2	9.0	0.019	15.2	9.0	2.3	1	1	1	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
zinc_ribbon_9	PF14369.6	gi|410670280|ref|YP_006922651.1|	-	0.029	14.6	1.9	0.029	14.6	1.9	3.0	2	1	1	3	3	3	0	zinc-ribbon
zf-RING_2	PF13639.6	gi|410670280|ref|YP_006922651.1|	-	0.034	14.5	3.7	0.034	14.5	3.7	1.9	2	0	0	2	2	2	0	Ring	finger	domain
HEPN_RES_NTD1	PF18870.1	gi|410670280|ref|YP_006922651.1|	-	0.038	14.2	4.7	0.061	13.5	4.7	1.3	1	0	0	1	1	1	0	HEPN/RES	N-terminal	domain	1
Zn-ribbon_8	PF09723.10	gi|410670280|ref|YP_006922651.1|	-	0.047	13.8	9.6	0.92	9.7	6.6	2.6	2	1	0	2	2	2	0	Zinc	ribbon	domain
zf-RING_4	PF14570.6	gi|410670280|ref|YP_006922651.1|	-	0.08	12.7	9.4	0.047	13.5	5.9	2.1	2	0	0	2	2	2	0	RING/Ubox	like	zinc-binding	domain
zf-C2H2_4	PF13894.6	gi|410670280|ref|YP_006922651.1|	-	0.089	13.7	12.1	9.4	7.4	0.1	3.5	3	0	0	3	3	3	0	C2H2-type	zinc	finger
zf_UBZ	PF18439.1	gi|410670280|ref|YP_006922651.1|	-	0.4	10.3	12.9	11	5.7	0.1	3.7	3	1	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
Nudix_N_2	PF14803.6	gi|410670280|ref|YP_006922651.1|	-	0.5	10.3	0.1	0.5	10.3	0.1	3.6	2	1	0	2	2	1	0	Nudix	N-terminal
DUF2688	PF10892.8	gi|410670280|ref|YP_006922651.1|	-	0.55	9.7	3.8	2.6	7.6	1.4	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2688)
zf-AN1	PF01428.16	gi|410670280|ref|YP_006922651.1|	-	0.61	10.3	10.8	0.82	9.9	2.6	3.1	3	0	0	3	3	3	0	AN1-like	Zinc	finger
zf-C2H2	PF00096.26	gi|410670280|ref|YP_006922651.1|	-	0.76	10.3	14.9	8.7	7.0	0.3	3.5	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
CK_II_beta	PF01214.18	gi|410670280|ref|YP_006922651.1|	-	0.79	9.5	8.2	1.5	8.6	8.2	1.5	1	1	0	1	1	1	0	Casein	kinase	II	regulatory	subunit
zinc_ribbon_15	PF17032.5	gi|410670280|ref|YP_006922651.1|	-	1.6	9.6	12.5	3.9	8.3	0.6	2.4	1	1	1	2	2	2	0	zinc-ribbon	family
zf-BED	PF02892.15	gi|410670280|ref|YP_006922651.1|	-	1.9	8.6	10.4	0.8	9.8	0.2	3.1	3	0	0	3	3	3	0	BED	zinc	finger
Prok-RING_1	PF14446.6	gi|410670280|ref|YP_006922651.1|	-	2.3	8.2	11.6	35	4.4	6.9	3.1	2	1	0	2	2	2	0	Prokaryotic	RING	finger	family	1
OrfB_Zn_ribbon	PF07282.11	gi|410670280|ref|YP_006922651.1|	-	2.5	8.1	13.2	5.6	7.0	0.7	3.2	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
PknG_rubred	PF16919.5	gi|410670280|ref|YP_006922651.1|	-	4.2	7.5	6.8	2.9	8.1	2.0	2.3	1	1	1	2	2	2	0	Protein	kinase	G	rubredoxin	domain
Cript	PF10235.9	gi|410670280|ref|YP_006922651.1|	-	4.4	7.9	12.0	4.7	7.8	0.5	2.9	2	2	1	3	3	3	0	Microtubule-associated	protein	CRIPT
Zn_Tnp_IS91	PF14319.6	gi|410670280|ref|YP_006922651.1|	-	5.5	7.1	12.2	5.9e+02	0.6	0.2	3.0	1	1	2	3	3	3	0	Transposase	zinc-binding	domain
zf-LITAF-like	PF10601.9	gi|410670280|ref|YP_006922651.1|	-	7.4	6.9	9.6	23	5.4	5.8	3.0	2	1	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
CpXC	PF14353.6	gi|410670280|ref|YP_006922651.1|	-	8	6.5	10.2	1.9	8.6	0.1	2.9	1	1	2	3	3	3	0	CpXC	protein
Proteasome	PF00227.26	gi|410670281|ref|YP_006922652.1|	-	1e-05	25.1	0.1	3e-05	23.6	0.0	1.9	2	0	0	2	2	2	1	Proteasome	subunit
Guanylate_cyc	PF00211.20	gi|410670281|ref|YP_006922652.1|	-	0.023	14.3	0.1	0.77	9.3	0.0	2.2	2	0	0	2	2	2	0	Adenylate	and	Guanylate	cyclase	catalytic	domain
DDE_3	PF13358.6	gi|410670282|ref|YP_006922653.1|	-	6.1e-23	81.2	0.1	6.1e-23	81.2	0.1	1.4	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
DDE_1	PF03184.19	gi|410670282|ref|YP_006922653.1|	-	6e-08	32.5	0.2	7.4e-08	32.2	0.2	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|410670282|ref|YP_006922653.1|	-	1.2e-05	25.5	0.0	1.8e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	Integrase	core	domain
DDE_Tnp_ISAZ013	PF07592.11	gi|410670282|ref|YP_006922653.1|	-	0.0076	15.3	0.1	0.01	14.9	0.1	1.2	1	0	0	1	1	1	1	Rhodopirellula	transposase	DDE	domain
HTH_32	PF13565.6	gi|410670283|ref|YP_006922654.1|	-	3.3e-12	46.9	0.0	5.2e-12	46.2	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_33	PF13592.6	gi|410670283|ref|YP_006922654.1|	-	2.1e-08	33.7	0.0	4.7e-08	32.6	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_29	PF13551.6	gi|410670283|ref|YP_006922654.1|	-	1.5e-07	31.3	0.0	3e-07	30.4	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|410670283|ref|YP_006922654.1|	-	2.3e-06	27.3	0.1	1.1e-05	25.1	0.0	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_ABP1_N	PF18107.1	gi|410670283|ref|YP_006922654.1|	-	0.0031	17.2	0.1	0.0053	16.4	0.1	1.3	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
HTH_28	PF13518.6	gi|410670283|ref|YP_006922654.1|	-	0.0041	17.2	0.0	0.0094	16.1	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
OTCace	PF00185.24	gi|410670285|ref|YP_006922656.1|	-	5.6e-61	205.2	0.0	9.4e-61	204.5	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
OTCace_N	PF02729.21	gi|410670285|ref|YP_006922656.1|	-	7e-55	185.1	0.1	1.6e-54	183.9	0.0	1.6	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
GARS_A	PF01071.19	gi|410670286|ref|YP_006922657.1|	-	2.3e-53	180.9	0.1	2e-52	177.8	0.0	2.3	3	0	0	3	3	3	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_N	PF02844.15	gi|410670286|ref|YP_006922657.1|	-	1.6e-25	89.7	0.8	3.9e-25	88.5	0.4	1.8	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	N	domain
GARS_C	PF02843.16	gi|410670286|ref|YP_006922657.1|	-	2.5e-14	53.3	2.4	8.3e-14	51.6	0.5	2.6	4	0	0	4	4	4	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_4	PF13535.6	gi|410670286|ref|YP_006922657.1|	-	0.001	18.7	0.0	0.0024	17.5	0.0	1.6	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|410670286|ref|YP_006922657.1|	-	0.0016	18.5	0.0	0.0026	17.8	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
DUF3182	PF11379.8	gi|410670286|ref|YP_006922657.1|	-	0.034	13.1	0.0	0.08	11.9	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3182)
Pribosyltran	PF00156.27	gi|410670287|ref|YP_006922658.1|	-	3.6e-12	46.1	1.1	4.8e-12	45.7	1.1	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|410670287|ref|YP_006922658.1|	-	0.095	12.1	0.0	0.15	11.5	0.0	1.4	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
CarS-like	PF01864.17	gi|410670288|ref|YP_006922659.1|	-	1.8e-53	181.1	4.1	2e-53	180.9	4.1	1.0	1	0	0	1	1	1	1	CDP-archaeol	synthase
CTP_transf_1	PF01148.20	gi|410670288|ref|YP_006922659.1|	-	5.6e-09	36.2	2.7	5.6e-09	36.2	2.7	1.9	1	1	1	2	2	2	1	Cytidylyltransferase	family
LapA_dom	PF06305.11	gi|410670288|ref|YP_006922659.1|	-	0.016	15.0	0.7	0.016	15.0	0.7	2.7	2	1	1	3	3	3	0	Lipopolysaccharide	assembly	protein	A	domain
CcmF_C	PF16327.5	gi|410670289|ref|YP_006922660.1|	-	3.7e-15	56.0	4.0	5.6e-15	55.5	4.0	1.2	1	0	0	1	1	1	1	Cytochrome	c-type	biogenesis	protein	CcmF	C-terminal
ResB	PF05140.14	gi|410670289|ref|YP_006922660.1|	-	0.042	12.6	7.3	0.061	12.1	0.2	2.7	2	1	0	3	3	3	0	ResB-like	family
Cytochrom_C_asm	PF01578.20	gi|410670290|ref|YP_006922661.1|	-	4.2e-36	124.7	20.7	4.2e-36	124.7	20.7	2.3	2	1	0	2	2	2	1	Cytochrome	C	assembly	protein
Exonuc_VII_S	PF02609.16	gi|410670291|ref|YP_006922662.1|	-	1.9e-19	69.5	5.6	2.7e-19	69.0	5.6	1.2	1	0	0	1	1	1	1	Exonuclease	VII	small	subunit
Exonuc_VII_L	PF02601.15	gi|410670292|ref|YP_006922663.1|	-	7.2e-88	295.1	0.0	2.4e-78	263.8	0.0	2.1	1	1	1	2	2	2	2	Exonuclease	VII,	large	subunit
tRNA_anti_2	PF13742.6	gi|410670292|ref|YP_006922663.1|	-	2.8e-31	107.6	0.0	5.2e-31	106.7	0.0	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA_anti-codon	PF01336.25	gi|410670292|ref|YP_006922663.1|	-	7.3e-07	29.1	0.0	4.8e-06	26.5	0.0	2.2	2	0	0	2	2	2	1	OB-fold	nucleic	acid	binding	domain
RecJ_OB	PF17768.1	gi|410670292|ref|YP_006922663.1|	-	0.03	14.6	0.0	0.052	13.8	0.0	1.4	1	0	0	1	1	1	0	RecJ	OB	domain
RbsD_FucU	PF05025.13	gi|410670292|ref|YP_006922663.1|	-	0.15	12.4	0.0	1.6	9.1	0.0	2.1	2	0	0	2	2	2	0	RbsD	/	FucU	transport	protein	family
Stomagen	PF16851.5	gi|410670293|ref|YP_006922664.1|	-	1	9.4	5.4	0.14	12.2	0.6	2.0	2	0	0	2	2	2	0	Stomagen
MazE_antitoxin	PF04014.18	gi|410670294|ref|YP_006922665.1|	-	0.0004	20.2	0.0	0.00051	19.9	0.0	1.3	1	1	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
Sm_multidrug_ex	PF06695.11	gi|410670297|ref|YP_006922668.1|	-	4.5e-14	53.1	0.7	7.5e-14	52.4	0.7	1.4	1	0	0	1	1	1	1	Putative	small	multi-drug	export	protein
Deltameth_res	PF16020.5	gi|410670297|ref|YP_006922668.1|	-	2.5	8.0	4.3	2.1	8.3	0.4	2.6	3	0	0	3	3	3	0	Deltamethrin	resistance
DUF4330	PF14221.6	gi|410670299|ref|YP_006922670.1|	-	2.3	8.4	5.8	33	4.6	0.8	3.0	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4330)
N6_Mtase	PF02384.16	gi|410670301|ref|YP_006922672.1|	-	2.5e-68	230.7	0.0	3.4e-68	230.2	0.0	1.1	1	0	0	1	1	1	1	N-6	DNA	Methylase
HsdM_N	PF12161.8	gi|410670301|ref|YP_006922672.1|	-	7.9e-16	58.9	0.0	4.4e-15	56.5	0.0	2.2	1	1	0	1	1	1	1	HsdM	N-terminal	domain
UPF0020	PF01170.18	gi|410670301|ref|YP_006922672.1|	-	0.0011	18.7	0.5	0.017	14.8	0.4	2.6	2	1	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
Nuc_deoxyri_tr2	PF15891.5	gi|410670301|ref|YP_006922672.1|	-	0.063	13.6	0.0	0.13	12.5	0.0	1.5	1	0	0	1	1	1	0	Nucleoside	2-deoxyribosyltransferase	like
MTS	PF05175.14	gi|410670301|ref|YP_006922672.1|	-	0.069	12.7	0.0	1.1	8.8	0.0	2.4	2	1	0	2	2	2	0	Methyltransferase	small	domain
Methylase_S	PF01420.19	gi|410670302|ref|YP_006922673.1|	-	1.9e-33	116.0	6.1	1.4e-20	74.2	0.7	2.1	2	0	0	2	2	2	2	Type	I	restriction	modification	DNA	specificity	domain
HMG_box_5	PF14887.6	gi|410670302|ref|YP_006922673.1|	-	0.13	12.2	0.1	0.27	11.2	0.1	1.5	1	0	0	1	1	1	0	HMG	(high	mobility	group)	box	5
EcoEI_R_C	PF08463.10	gi|410670303|ref|YP_006922674.1|	-	2.2e-49	167.8	4.2	5.6e-49	166.5	1.1	2.9	3	0	0	3	3	3	1	EcoEI	R	protein	C-terminal
ResIII	PF04851.15	gi|410670303|ref|YP_006922674.1|	-	9.2e-41	139.7	0.0	2.1e-40	138.5	0.0	1.7	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
SWI2_SNF2	PF18766.1	gi|410670303|ref|YP_006922674.1|	-	3.3e-20	72.7	0.1	6.9e-20	71.7	0.1	1.5	1	0	0	1	1	1	1	SWI2/SNF2	ATPase
DEAD	PF00270.29	gi|410670303|ref|YP_006922674.1|	-	1.4e-09	37.9	0.0	8.4e-09	35.4	0.0	2.3	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
HSDR_N	PF04313.14	gi|410670303|ref|YP_006922674.1|	-	1.2e-08	35.2	0.3	8.1e-07	29.2	0.0	3.5	2	1	0	2	2	2	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
Helicase_C	PF00271.31	gi|410670303|ref|YP_006922674.1|	-	0.0012	19.2	0.0	0.0063	16.8	0.0	2.2	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ESCRT-II	PF05871.12	gi|410670303|ref|YP_006922674.1|	-	0.094	13.0	2.4	0.13	12.5	0.6	2.1	2	0	0	2	2	2	0	ESCRT-II	complex	subunit
DUF2070	PF09843.9	gi|410670304|ref|YP_006922675.1|	-	0.042	12.1	3.3	0.043	12.1	3.3	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
DUF5392	PF17370.2	gi|410670304|ref|YP_006922675.1|	-	0.089	12.9	0.5	0.11	12.6	0.5	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5392)
E1-E2_ATPase	PF00122.20	gi|410670304|ref|YP_006922675.1|	-	0.26	10.8	1.7	0.34	10.4	1.7	1.1	1	0	0	1	1	1	0	E1-E2	ATPase
DUF2207	PF09972.9	gi|410670304|ref|YP_006922675.1|	-	3.8	6.2	5.1	4.3	6.0	5.1	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
TFIIE_alpha	PF02002.17	gi|410670306|ref|YP_006922677.1|	-	0.0002	21.2	5.7	0.00044	20.1	1.2	3.2	2	2	0	2	2	2	1	TFIIE	alpha	subunit
AAA_10	PF12846.7	gi|410670306|ref|YP_006922677.1|	-	0.0059	15.6	0.3	0.15	11.0	0.0	2.3	2	0	0	2	2	2	1	AAA-like	domain
Penicillinase_R	PF03965.16	gi|410670306|ref|YP_006922677.1|	-	0.064	13.6	0.3	1.8	8.9	0.0	2.8	2	0	0	2	2	2	0	Penicillinase	repressor
TFIIB	PF00382.19	gi|410670307|ref|YP_006922678.1|	-	0.0074	16.3	0.0	0.0088	16.1	0.0	1.0	1	0	0	1	1	1	1	Transcription	factor	TFIIB	repeat
UCH_C	PF18031.1	gi|410670308|ref|YP_006922679.1|	-	0.0018	18.2	0.1	0.0024	17.7	0.1	1.2	1	0	0	1	1	1	1	Ubiquitin	carboxyl-terminal	hydrolases
Phage_integrase	PF00589.22	gi|410670309|ref|YP_006922680.1|	-	5.2e-08	32.9	0.0	1.9e-07	31.0	0.0	2.0	2	0	0	2	2	2	1	Phage	integrase	family
Phage_integr_3	PF16795.5	gi|410670309|ref|YP_006922680.1|	-	0.0012	18.8	0.0	0.0037	17.2	0.0	1.9	1	0	0	1	1	1	1	Archaeal	phage	integrase
Phage_int_SAM_4	PF13495.6	gi|410670309|ref|YP_006922680.1|	-	0.0039	17.6	0.4	13	6.4	0.0	3.6	3	0	0	3	3	3	2	Phage	integrase,	N-terminal	SAM-like	domain
GreA_GreB_N	PF03449.15	gi|410670309|ref|YP_006922680.1|	-	0.022	14.9	6.3	7.1	6.9	0.0	3.7	2	1	1	3	3	3	0	Transcription	elongation	factor,	N-terminal
DUF677	PF05055.12	gi|410670309|ref|YP_006922680.1|	-	0.027	13.4	1.3	0.045	12.6	1.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF677)
Swi5	PF07061.11	gi|410670309|ref|YP_006922680.1|	-	0.13	12.4	1.6	3.6	7.8	0.0	2.8	2	0	0	2	2	2	0	Swi5
T2SSE	PF00437.20	gi|410670310|ref|YP_006922681.1|	-	1.4e-24	86.7	0.0	1.9e-24	86.2	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_7	PF12775.7	gi|410670310|ref|YP_006922681.1|	-	0.0024	17.4	0.0	0.0041	16.6	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
ATPase	PF06745.13	gi|410670310|ref|YP_006922681.1|	-	0.0093	15.3	0.0	0.02	14.2	0.0	1.5	1	0	0	1	1	1	1	KaiC
Zeta_toxin	PF06414.12	gi|410670310|ref|YP_006922681.1|	-	0.017	14.4	0.1	0.032	13.5	0.1	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_16	PF13191.6	gi|410670310|ref|YP_006922681.1|	-	0.027	14.9	0.0	0.084	13.2	0.0	1.7	2	0	0	2	2	2	0	AAA	ATPase	domain
cobW	PF02492.19	gi|410670310|ref|YP_006922681.1|	-	0.029	14.0	0.0	0.068	12.7	0.0	1.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
DEAD	PF00270.29	gi|410670310|ref|YP_006922681.1|	-	0.16	11.7	0.2	0.57	9.9	0.2	1.9	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
TPR_5	PF12688.7	gi|410670311|ref|YP_006922682.1|	-	0.054	13.7	0.1	0.25	11.6	0.0	2.1	2	0	0	2	2	2	0	Tetratrico	peptide	repeat
DUF2207	PF09972.9	gi|410670311|ref|YP_006922682.1|	-	2.4	6.8	14.6	6.1	5.5	0.8	3.9	4	0	0	4	4	4	0	Predicted	membrane	protein	(DUF2207)
Flavin_Reduct	PF01613.18	gi|410670312|ref|YP_006922683.1|	-	1.8e-24	86.6	0.0	2.3e-24	86.2	0.0	1.0	1	0	0	1	1	1	1	Flavin	reductase	like	domain
Radical_SAM	PF04055.21	gi|410670313|ref|YP_006922684.1|	-	5.7e-08	33.3	0.0	1.2e-07	32.2	0.0	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|410670313|ref|YP_006922684.1|	-	3.7e-06	27.1	0.0	8e-06	26.0	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|410670313|ref|YP_006922684.1|	-	0.0034	17.6	0.0	0.0074	16.6	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
DUF2551	PF10826.8	gi|410670314|ref|YP_006922685.1|	-	9e-32	109.2	0.4	1.1e-31	108.8	0.4	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2551)
AvrM_N	PF18247.1	gi|410670314|ref|YP_006922685.1|	-	0.13	12.2	0.0	0.28	11.1	0.0	1.5	2	0	0	2	2	2	0	Flax-rust	effector	AvrM	N-terminal	domain
Prenyltransf	PF01255.19	gi|410670315|ref|YP_006922686.1|	-	7.5e-68	228.4	0.0	9.1e-68	228.1	0.0	1.1	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
RNA_pol_A_bac	PF01000.26	gi|410670316|ref|YP_006922687.1|	-	1.1e-23	83.8	0.0	1.9e-23	83.0	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.24	gi|410670316|ref|YP_006922687.1|	-	5.8e-13	48.1	0.0	7.4e-13	47.7	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Fer4	PF00037.27	gi|410670316|ref|YP_006922687.1|	-	1.5e-09	37.2	13.9	3.8e-06	26.5	3.7	2.8	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|410670316|ref|YP_006922687.1|	-	1e-05	26.0	29.6	0.00011	22.7	10.3	2.6	2	1	2	4	4	3	3	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410670316|ref|YP_006922687.1|	-	1.6e-05	25.7	5.4	0.0046	17.9	1.2	2.6	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|410670316|ref|YP_006922687.1|	-	5.4e-05	23.3	17.1	0.048	13.8	10.5	2.8	1	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410670316|ref|YP_006922687.1|	-	0.00011	22.0	13.6	0.00026	20.9	2.8	2.7	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|410670316|ref|YP_006922687.1|	-	0.00035	20.6	10.9	0.00035	20.6	10.9	2.3	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|410670316|ref|YP_006922687.1|	-	0.0012	19.3	13.1	0.38	11.2	0.1	2.7	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410670316|ref|YP_006922687.1|	-	0.0054	16.8	3.4	0.0054	16.8	3.4	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410670316|ref|YP_006922687.1|	-	0.016	15.3	17.1	0.078	13.1	0.7	2.9	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410670316|ref|YP_006922687.1|	-	0.038	14.5	3.3	0.038	14.5	3.3	2.9	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|410670316|ref|YP_006922687.1|	-	0.11	13.4	4.6	0.11	13.4	4.6	3.0	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|410670316|ref|YP_006922687.1|	-	0.75	10.5	23.6	0.28	11.8	4.8	3.3	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|410670316|ref|YP_006922687.1|	-	1.8	8.8	11.3	8.5	6.6	11.3	2.1	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|410670316|ref|YP_006922687.1|	-	7.2	7.4	11.3	1.8	9.4	2.7	2.6	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
Ribosomal_S11	PF00411.19	gi|410670317|ref|YP_006922688.1|	-	1.4e-46	157.4	2.3	2e-46	156.9	2.3	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S11
Pilus_CpaD	PF09476.10	gi|410670317|ref|YP_006922688.1|	-	0.00046	20.0	0.1	0.00056	19.7	0.1	1.2	1	0	0	1	1	1	1	Pilus	biogenesis	CpaD	protein	(pilus_cpaD)
CBM_25	PF03423.13	gi|410670317|ref|YP_006922688.1|	-	0.041	14.1	0.1	0.089	13.0	0.0	1.6	2	0	0	2	2	2	0	Carbohydrate	binding	domain	(family	25)
S4	PF01479.25	gi|410670318|ref|YP_006922689.1|	-	6.8e-16	57.7	0.3	1.8e-15	56.4	0.0	1.8	2	0	0	2	2	2	1	S4	domain
Ribosomal_S13	PF00416.22	gi|410670319|ref|YP_006922690.1|	-	9.2e-38	129.5	0.2	1.1e-37	129.3	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
NPV_P10	PF05531.12	gi|410670319|ref|YP_006922690.1|	-	0.15	12.5	0.0	26	5.4	0.0	2.2	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
MFS_1	PF07690.16	gi|410670320|ref|YP_006922691.1|	-	2.5e-16	59.6	70.0	1.2e-12	47.5	42.6	2.4	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|410670320|ref|YP_006922691.1|	-	6.1e-05	22.1	30.5	0.0022	17.0	10.5	2.7	2	1	1	3	3	3	2	Sugar	(and	other)	transporter
MFS_1_like	PF12832.7	gi|410670320|ref|YP_006922691.1|	-	0.00044	19.2	28.0	0.044	12.7	28.0	2.3	1	1	0	1	1	1	1	MFS_1	like	family
TraT	PF05818.12	gi|410670320|ref|YP_006922691.1|	-	0.87	9.2	2.4	16	5.1	0.3	2.2	2	0	0	2	2	2	0	Enterobacterial	TraT	complement	resistance	protein
LPAM_1	PF08139.12	gi|410670321|ref|YP_006922692.1|	-	2	9.0	4.1	6.2	7.5	4.1	1.9	1	0	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
CarboxypepD_reg	PF13620.6	gi|410670322|ref|YP_006922693.1|	-	1.5e-07	31.6	0.0	4.1e-07	30.2	0.0	1.8	1	0	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
CarbopepD_reg_2	PF13715.6	gi|410670322|ref|YP_006922693.1|	-	0.00013	21.9	0.0	0.00036	20.5	0.0	1.8	1	0	0	1	1	1	1	CarboxypepD_reg-like	domain
AIM3	PF17096.5	gi|410670322|ref|YP_006922693.1|	-	0.014	16.3	2.3	0.037	15.0	2.3	1.7	1	0	0	1	1	1	0	Altered	inheritance	of	mitochondria	protein	3
Big_1	PF02369.16	gi|410670322|ref|YP_006922693.1|	-	0.038	14.0	0.0	0.15	12.1	0.0	2.0	2	0	0	2	2	2	0	Bacterial	Ig-like	domain	(group	1)
Acetyltransf_10	PF13673.7	gi|410670323|ref|YP_006922694.1|	-	1e-13	51.3	0.0	1.2e-13	51.1	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|410670323|ref|YP_006922694.1|	-	3.5e-12	46.6	0.1	4.7e-12	46.2	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|410670323|ref|YP_006922694.1|	-	1.5e-11	44.6	0.1	1.8e-11	44.3	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_15	PF17013.5	gi|410670323|ref|YP_006922694.1|	-	0.00061	19.3	0.1	0.0033	16.9	0.0	1.9	1	1	1	2	2	2	1	Putative	acetyl-transferase
Acetyltransf_9	PF13527.7	gi|410670323|ref|YP_006922694.1|	-	0.00077	19.5	0.0	0.0074	16.4	0.0	2.0	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|410670323|ref|YP_006922694.1|	-	0.0083	16.1	0.0	0.02	14.9	0.0	1.8	1	1	0	1	1	1	1	FR47-like	protein
Acetyltransf_CG	PF14542.6	gi|410670323|ref|YP_006922694.1|	-	0.051	13.7	0.0	0.073	13.2	0.0	1.3	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
PUA	PF01472.20	gi|410670323|ref|YP_006922694.1|	-	0.08	12.9	0.0	0.12	12.3	0.0	1.4	1	0	0	1	1	1	0	PUA	domain
TruB_C_2	PF16198.5	gi|410670324|ref|YP_006922695.1|	-	1.4e-25	89.2	0.1	3.7e-25	87.9	0.1	1.8	1	0	0	1	1	1	1	tRNA	pseudouridylate	synthase	B	C-terminal	domain
TruB_N	PF01509.18	gi|410670324|ref|YP_006922695.1|	-	3.4e-22	79.4	0.1	2.6e-18	66.8	0.1	3.1	1	1	0	1	1	1	1	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
DKCLD	PF08068.12	gi|410670324|ref|YP_006922695.1|	-	2e-17	63.0	0.0	4e-17	62.0	0.0	1.5	1	0	0	1	1	1	1	DKCLD	(NUC011)	domain
PUA	PF01472.20	gi|410670324|ref|YP_006922695.1|	-	3.9e-15	55.6	0.1	8.6e-15	54.5	0.1	1.6	1	0	0	1	1	1	1	PUA	domain
Cytidylate_kin2	PF13189.6	gi|410670325|ref|YP_006922696.1|	-	5.6e-21	75.5	1.0	7.6e-20	71.8	1.0	1.9	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_18	PF13238.6	gi|410670325|ref|YP_006922696.1|	-	8.1e-14	52.3	0.1	1e-13	51.9	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|410670325|ref|YP_006922696.1|	-	1.7e-10	41.4	0.1	2.3e-10	41.0	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|410670325|ref|YP_006922696.1|	-	1.8e-09	37.6	2.2	0.00048	19.9	0.7	2.1	1	1	0	2	2	2	2	Cytidylate	kinase
AAA_28	PF13521.6	gi|410670325|ref|YP_006922696.1|	-	0.00013	22.2	0.2	0.00034	20.9	0.0	1.7	1	1	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|410670325|ref|YP_006922696.1|	-	0.00059	20.0	0.5	0.004	17.3	0.5	1.9	1	1	0	1	1	1	1	AAA	domain
SKI	PF01202.22	gi|410670325|ref|YP_006922696.1|	-	0.0013	18.9	0.6	0.0049	17.0	0.6	1.8	1	1	0	1	1	1	1	Shikimate	kinase
ADK	PF00406.22	gi|410670325|ref|YP_006922696.1|	-	0.0013	18.9	0.1	0.0019	18.3	0.1	1.6	1	1	0	1	1	1	1	Adenylate	kinase
CoaE	PF01121.20	gi|410670325|ref|YP_006922696.1|	-	0.002	17.8	0.5	0.47	10.1	0.0	2.1	1	1	1	2	2	2	2	Dephospho-CoA	kinase
Sulfotransfer_3	PF13469.6	gi|410670325|ref|YP_006922696.1|	-	0.0089	16.4	0.0	0.0098	16.3	0.0	1.2	1	0	0	1	1	1	1	Sulfotransferase	family
SAD_SRA	PF02182.17	gi|410670325|ref|YP_006922696.1|	-	0.064	13.0	0.0	0.087	12.5	0.0	1.2	1	0	0	1	1	1	0	SAD/SRA	domain
dNK	PF01712.19	gi|410670325|ref|YP_006922696.1|	-	0.074	12.9	0.3	2.1	8.1	0.0	2.2	1	1	1	2	2	2	0	Deoxynucleoside	kinase
TetR_C_4	PF08359.11	gi|410670325|ref|YP_006922696.1|	-	0.088	13.0	0.0	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	YsiA-like	protein,	C-terminal	region
Rad17	PF03215.15	gi|410670325|ref|YP_006922696.1|	-	0.15	12.0	0.0	0.22	11.4	0.0	1.4	1	1	0	1	1	1	0	Rad17	P-loop	domain
EMC3_TMCO1	PF01956.16	gi|410670326|ref|YP_006922697.1|	-	1.9e-45	154.6	9.4	2.4e-45	154.3	9.4	1.1	1	0	0	1	1	1	1	Integral	membrane	protein	EMC3/TMCO1-like
DUF624	PF04854.14	gi|410670326|ref|YP_006922697.1|	-	0.011	15.9	6.0	0.55	10.4	0.2	3.5	3	1	1	4	4	4	0	Protein	of	unknown	function,	DUF624
BPD_transp_2	PF02653.16	gi|410670326|ref|YP_006922697.1|	-	0.82	8.8	7.8	0.098	11.8	2.0	2.1	2	1	0	2	2	2	0	Branched-chain	amino	acid	transport	system	/	permease	component
ADK	PF00406.22	gi|410670327|ref|YP_006922698.1|	-	1.4e-58	197.3	0.0	1.6e-58	197.1	0.0	1.0	1	0	0	1	1	1	1	Adenylate	kinase
AAA_17	PF13207.6	gi|410670327|ref|YP_006922698.1|	-	1e-30	106.9	0.0	3.1e-30	105.4	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
ADK_lid	PF05191.14	gi|410670327|ref|YP_006922698.1|	-	1.4e-17	63.3	2.8	2.8e-17	62.4	2.8	1.5	1	0	0	1	1	1	1	Adenylate	kinase,	active	site	lid
AAA_18	PF13238.6	gi|410670327|ref|YP_006922698.1|	-	2.5e-07	31.3	0.0	4.5e-07	30.5	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|410670327|ref|YP_006922698.1|	-	4.4e-06	26.9	0.0	9.2e-06	25.9	0.0	1.6	2	0	0	2	2	1	1	AAA	domain
TF_Zn_Ribbon	PF08271.12	gi|410670327|ref|YP_006922698.1|	-	8.9e-05	21.9	2.2	0.00019	20.9	2.2	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
Hydin_ADK	PF17213.3	gi|410670327|ref|YP_006922698.1|	-	0.00015	22.1	0.3	0.1	12.9	0.0	2.3	1	1	1	2	2	2	2	Hydin	Adenylate	kinase-like	domain
AAA_28	PF13521.6	gi|410670327|ref|YP_006922698.1|	-	0.00059	20.1	0.0	0.012	15.8	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|410670327|ref|YP_006922698.1|	-	0.0024	17.7	0.0	0.0036	17.1	0.0	1.2	1	0	0	1	1	1	1	Cytidylate	kinase
Ribosomal_S27e	PF01667.17	gi|410670327|ref|YP_006922698.1|	-	0.009	15.7	0.4	0.016	14.9	0.4	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S27
AAA	PF00004.29	gi|410670327|ref|YP_006922698.1|	-	0.019	15.4	0.0	0.034	14.6	0.0	1.4	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DZR	PF12773.7	gi|410670327|ref|YP_006922698.1|	-	0.019	15.0	1.4	0.088	12.9	1.5	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|410670327|ref|YP_006922698.1|	-	0.033	14.1	0.9	0.07	13.1	0.9	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
RNHCP	PF12647.7	gi|410670327|ref|YP_006922698.1|	-	0.037	14.0	0.2	0.062	13.3	0.2	1.3	1	0	0	1	1	1	0	RNHCP	domain
Zn_Tnp_IS1595	PF12760.7	gi|410670327|ref|YP_006922698.1|	-	0.052	13.5	2.0	0.099	12.6	2.0	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|410670327|ref|YP_006922698.1|	-	0.058	12.8	3.0	1	8.8	0.4	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|410670327|ref|YP_006922698.1|	-	0.059	13.2	0.8	8.8	6.2	0.1	2.4	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-RRN7	PF11781.8	gi|410670327|ref|YP_006922698.1|	-	0.073	12.8	2.7	0.93	9.2	0.2	2.4	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
AAA_24	PF13479.6	gi|410670327|ref|YP_006922698.1|	-	0.075	12.7	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Zn-ribbon_8	PF09723.10	gi|410670327|ref|YP_006922698.1|	-	0.076	13.1	1.1	0.16	12.2	1.1	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
Rad17	PF03215.15	gi|410670327|ref|YP_006922698.1|	-	0.14	12.1	0.0	0.3	11.0	0.0	1.5	2	0	0	2	2	2	0	Rad17	P-loop	domain
Thymidylate_kin	PF02223.17	gi|410670327|ref|YP_006922698.1|	-	0.15	11.7	0.0	0.65	9.7	0.0	1.9	2	1	0	2	2	2	0	Thymidylate	kinase
AAA_22	PF13401.6	gi|410670327|ref|YP_006922698.1|	-	0.16	12.2	0.0	0.29	11.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF1451	PF07295.11	gi|410670327|ref|YP_006922698.1|	-	0.19	11.8	0.7	0.28	11.2	0.7	1.2	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
zf-ACC	PF17848.1	gi|410670327|ref|YP_006922698.1|	-	0.27	11.3	1.8	11	6.3	0.1	2.4	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
zinc_ribbon_2	PF13240.6	gi|410670327|ref|YP_006922698.1|	-	0.3	10.9	3.4	2.1	8.2	0.5	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ISL3	PF14690.6	gi|410670327|ref|YP_006922698.1|	-	0.36	11.5	4.0	38	5.1	4.0	2.3	1	1	0	1	1	1	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Prok-RING_1	PF14446.6	gi|410670327|ref|YP_006922698.1|	-	0.51	10.3	5.3	4.4	7.3	0.6	2.2	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
DNA_ligase_ZBD	PF03119.16	gi|410670327|ref|YP_006922698.1|	-	1.2	9.2	4.0	7.5	6.7	0.1	2.4	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
SecY	PF00344.20	gi|410670328|ref|YP_006922699.1|	-	7.3e-65	219.2	23.9	8.8e-65	218.9	23.9	1.1	1	0	0	1	1	1	1	SecY	translocase
Plug_translocon	PF10559.9	gi|410670328|ref|YP_006922699.1|	-	7.6e-12	44.9	0.7	7.6e-12	44.9	0.7	2.8	3	0	0	3	3	3	1	Plug	domain	of	Sec61p
Ribosomal_L27A	PF00828.19	gi|410670329|ref|YP_006922700.1|	-	8.1e-22	78.3	0.1	1e-21	77.9	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
Ribosomal_L18	PF17135.4	gi|410670329|ref|YP_006922700.1|	-	0.016	14.6	0.1	0.027	13.9	0.1	1.3	1	0	0	1	1	1	0	Ribosomal	protein	60S	L18	and	50S	L18e
Ribosomal_S5	PF00333.20	gi|410670331|ref|YP_006922702.1|	-	2.8e-25	88.1	1.3	7.5e-25	86.7	1.3	1.8	1	0	0	1	1	1	1	Ribosomal	protein	S5,	N-terminal	domain
Ribosomal_S5_C	PF03719.15	gi|410670331|ref|YP_006922702.1|	-	3.3e-22	77.7	1.2	4.2e-22	77.4	0.3	1.6	2	0	0	2	2	2	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_L5e	PF17144.4	gi|410670332|ref|YP_006922703.1|	-	2.1e-21	76.6	0.0	1.2e-11	44.9	0.0	2.1	1	1	1	2	2	2	2	Ribosomal	large	subunit	proteins	60S	L5,	and	50S	L18
Ribosomal_L18p	PF00861.22	gi|410670332|ref|YP_006922703.1|	-	0.0022	18.3	0.0	0.0032	17.8	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	L18	of	archaea,	bacteria,	mitoch.	and	chloroplast
Lipoprotein_16	PF03923.13	gi|410670332|ref|YP_006922703.1|	-	0.084	12.5	0.0	0.14	11.8	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	lipoprotein
Ribosomal_L19e	PF01280.20	gi|410670333|ref|YP_006922704.1|	-	3.3e-55	186.1	9.6	3.7e-55	186.0	9.6	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
Lant_dehydr_C	PF14028.6	gi|410670333|ref|YP_006922704.1|	-	0.031	13.8	0.3	0.032	13.8	0.3	1.1	1	0	0	1	1	1	0	Lantibiotic	biosynthesis	dehydratase	C-term
DUF573	PF04504.14	gi|410670333|ref|YP_006922704.1|	-	4.2	8.1	6.0	1.4	9.6	0.7	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function,	DUF573
Ribosomal_L32e	PF01655.18	gi|410670334|ref|YP_006922705.1|	-	5.9e-35	120.0	0.1	7.2e-35	119.7	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L32
HNH_repeat	PF18780.1	gi|410670334|ref|YP_006922705.1|	-	0.17	11.7	0.9	0.4	10.5	0.9	1.7	1	0	0	1	1	1	0	Homing	endonuclease	repeat
Ribosomal_L6	PF00347.23	gi|410670335|ref|YP_006922706.1|	-	1.7e-26	92.7	6.2	4.3e-14	52.9	0.5	2.1	2	0	0	2	2	2	2	Ribosomal	protein	L6
Ribosomal_S8	PF00410.19	gi|410670336|ref|YP_006922707.1|	-	5.1e-27	94.3	0.0	6.2e-27	94.1	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S8
Ribosomal_S14	PF00253.21	gi|410670337|ref|YP_006922708.1|	-	4e-14	52.1	1.4	4.4e-14	52.0	1.4	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S14p/S29e
zf-P11	PF03854.14	gi|410670337|ref|YP_006922708.1|	-	0.0019	17.8	1.2	0.0022	17.6	1.2	1.1	1	0	0	1	1	1	1	P-11	zinc	finger
DUF4428	PF14471.6	gi|410670337|ref|YP_006922708.1|	-	0.0029	17.5	0.2	0.0033	17.3	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4428)
DUF1451	PF07295.11	gi|410670337|ref|YP_006922708.1|	-	0.042	13.9	0.8	0.05	13.6	0.8	1.1	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
Ribosomal_L5_C	PF00673.21	gi|410670338|ref|YP_006922709.1|	-	4.4e-27	94.1	0.0	6.2e-27	93.6	0.0	1.2	1	0	0	1	1	1	1	ribosomal	L5P	family	C-terminus
Ribosomal_L5	PF00281.19	gi|410670338|ref|YP_006922709.1|	-	2.9e-17	62.7	0.1	5.3e-17	61.9	0.1	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L5
Ribosomal_S4e	PF00900.20	gi|410670339|ref|YP_006922710.1|	-	6.3e-23	80.5	0.2	1.2e-22	79.6	0.2	1.5	1	0	0	1	1	1	1	Ribosomal	family	S4e
RS4NT	PF08071.12	gi|410670339|ref|YP_006922710.1|	-	7.9e-11	41.9	1.3	1.3e-10	41.2	1.3	1.4	1	0	0	1	1	1	1	RS4NT	(NUC023)	domain
S4	PF01479.25	gi|410670339|ref|YP_006922710.1|	-	8.3e-07	28.6	2.3	1.4e-06	27.9	0.2	2.5	3	0	0	3	3	3	1	S4	domain
KOW	PF00467.29	gi|410670339|ref|YP_006922710.1|	-	3.1e-05	23.7	0.0	0.0001	22.1	0.0	1.9	1	0	0	1	1	1	1	KOW	motif
S4_2	PF13275.6	gi|410670339|ref|YP_006922710.1|	-	0.017	15.0	0.1	0.064	13.1	0.0	2.0	2	0	0	2	2	2	0	S4	domain
Ribosomal_L26	PF16906.5	gi|410670340|ref|YP_006922711.1|	-	9.6e-31	106.1	0.2	1.2e-30	105.8	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	proteins	L26	eukaryotic,	L24P	archaeal
KOW	PF00467.29	gi|410670340|ref|YP_006922711.1|	-	2.1e-07	30.6	1.8	4.4e-07	29.6	1.8	1.5	1	0	0	1	1	1	1	KOW	motif
Ribosomal_L14	PF00238.19	gi|410670341|ref|YP_006922712.1|	-	5.1e-36	123.5	0.7	5.6e-36	123.3	0.7	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
Ribosomal_S17	PF00366.20	gi|410670342|ref|YP_006922713.1|	-	3.8e-28	97.4	4.1	4.6e-28	97.1	4.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S17
Ribosomal_S17_N	PF16205.5	gi|410670342|ref|YP_006922713.1|	-	0.031	14.7	0.2	0.14	12.5	0.0	2.0	2	0	0	2	2	2	0	Ribosomal_S17	N-terminal
UPF0086	PF01868.16	gi|410670343|ref|YP_006922714.1|	-	5.1e-25	87.2	0.1	5.8e-25	87.0	0.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	UPF0086
Myosin_N	PF02736.19	gi|410670343|ref|YP_006922714.1|	-	0.0021	17.8	0.5	0.0039	17.0	0.5	1.5	1	0	0	1	1	1	1	Myosin	N-terminal	SH3-like	domain
Ribosomal_L29	PF00831.23	gi|410670344|ref|YP_006922715.1|	-	1.1e-17	63.7	0.1	1.4e-17	63.4	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	L29	protein
MerR-DNA-bind	PF09278.11	gi|410670344|ref|YP_006922715.1|	-	0.1	13.1	2.6	8.2	7.1	0.8	2.6	2	1	0	2	2	2	0	MerR,	DNA	binding
Toxin_36	PF10550.9	gi|410670344|ref|YP_006922715.1|	-	0.18	13.2	0.2	0.18	13.2	0.2	2.0	2	0	0	2	2	2	0	Conantokin-G	mollusc-toxin
Ribosomal_S3_C	PF00189.20	gi|410670345|ref|YP_006922716.1|	-	1.9e-21	76.3	0.6	1.9e-21	76.3	0.6	2.2	3	0	0	3	3	3	1	Ribosomal	protein	S3,	C-terminal	domain
KH_2	PF07650.17	gi|410670345|ref|YP_006922716.1|	-	2.5e-14	52.8	0.0	5.9e-14	51.6	0.0	1.7	1	0	0	1	1	1	1	KH	domain
KH_1	PF00013.29	gi|410670345|ref|YP_006922716.1|	-	0.017	15.0	0.7	0.44	10.4	0.1	3.0	3	0	0	3	3	3	0	KH	domain
KH_4	PF13083.6	gi|410670345|ref|YP_006922716.1|	-	0.44	10.4	3.9	0.86	9.5	0.1	2.8	2	1	1	3	3	3	0	KH	domain
Ribosomal_L22	PF00237.19	gi|410670346|ref|YP_006922717.1|	-	4e-28	97.7	0.2	4.8e-28	97.4	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L22p/L17e
Ribosomal_S19	PF00203.21	gi|410670347|ref|YP_006922718.1|	-	2.6e-24	84.9	0.1	3.8e-24	84.4	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S19
Ribosomal_L2_C	PF03947.18	gi|410670348|ref|YP_006922719.1|	-	1.3e-46	157.9	0.8	2e-46	157.3	0.8	1.3	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.23	gi|410670348|ref|YP_006922719.1|	-	2.8e-16	59.2	0.0	8.6e-16	57.7	0.0	1.9	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	RNA	binding	domain
Ribosomal_L23	PF00276.20	gi|410670349|ref|YP_006922720.1|	-	9.3e-15	54.8	0.5	6.8e-14	52.0	0.5	1.9	1	1	0	1	1	1	1	Ribosomal	protein	L23
Ribosomal_L4	PF00573.22	gi|410670350|ref|YP_006922721.1|	-	2.3e-48	164.4	0.5	2.7e-48	164.2	0.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
Ribosomal_L3	PF00297.22	gi|410670351|ref|YP_006922722.1|	-	1.4e-86	290.9	0.1	2.8e-86	289.8	0.1	1.5	1	1	0	1	1	1	1	Ribosomal	protein	L3
POR	PF01558.18	gi|410670352|ref|YP_006922723.1|	-	1.8e-40	138.9	0.2	2.1e-40	138.6	0.2	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_C	PF02775.21	gi|410670353|ref|YP_006922724.1|	-	1.7e-27	96.1	0.6	3.9e-27	94.9	0.6	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR_N	PF01855.19	gi|410670353|ref|YP_006922724.1|	-	4.7e-10	39.6	0.1	7.8e-10	38.9	0.1	1.3	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Fer4	PF00037.27	gi|410670353|ref|YP_006922724.1|	-	1.2e-07	31.2	10.4	0.0016	18.1	1.2	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
TPP_enzyme_N	PF02776.18	gi|410670353|ref|YP_006922724.1|	-	4.8e-05	23.0	0.2	0.00076	19.1	0.1	2.2	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Fer4_21	PF14697.6	gi|410670353|ref|YP_006922724.1|	-	0.00015	21.9	11.5	0.00072	19.6	11.5	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410670353|ref|YP_006922724.1|	-	0.00021	21.3	10.8	0.00061	19.9	10.8	1.8	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410670353|ref|YP_006922724.1|	-	0.00022	21.3	10.7	0.00063	19.9	10.7	1.8	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410670353|ref|YP_006922724.1|	-	0.00043	20.2	1.8	0.00043	20.2	1.8	3.6	4	0	0	4	4	3	2	4Fe-4S	binding	domain
PFOR_II	PF17147.4	gi|410670353|ref|YP_006922724.1|	-	0.0088	16.3	0.1	0.023	15.0	0.1	1.8	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Fer4_7	PF12838.7	gi|410670353|ref|YP_006922724.1|	-	0.026	15.1	12.4	0.2	12.3	12.6	2.4	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410670353|ref|YP_006922724.1|	-	0.034	14.2	2.1	0.034	14.2	2.1	3.4	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|410670353|ref|YP_006922724.1|	-	0.087	13.4	13.3	1.2	9.8	2.2	3.1	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DXP_synthase_N	PF13292.6	gi|410670353|ref|YP_006922724.1|	-	0.18	11.0	0.2	14	4.7	0.0	2.2	1	1	1	2	2	2	0	1-deoxy-D-xylulose-5-phosphate	synthase
Fer4_17	PF13534.6	gi|410670353|ref|YP_006922724.1|	-	3.2	8.4	13.5	15	6.3	4.1	2.7	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410670353|ref|YP_006922724.1|	-	3.3	8.7	12.0	2.9	8.9	2.2	2.7	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
TauE	PF01925.19	gi|410670354|ref|YP_006922725.1|	-	1.7e-30	106.4	27.9	1.9e-30	106.3	27.9	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
Aldedh	PF00171.22	gi|410670356|ref|YP_006922727.1|	-	4.1e-16	58.5	2.8	1.8e-13	49.9	0.6	2.3	2	1	0	2	2	2	2	Aldehyde	dehydrogenase	family
AA_kinase	PF00696.28	gi|410670357|ref|YP_006922728.1|	-	1.8e-38	132.5	0.3	2.4e-38	132.1	0.3	1.2	1	0	0	1	1	1	1	Amino	acid	kinase	family
PUA	PF01472.20	gi|410670357|ref|YP_006922728.1|	-	1.6e-16	60.0	0.1	3.4e-16	59.0	0.1	1.6	1	0	0	1	1	1	1	PUA	domain
TrmB	PF01978.19	gi|410670358|ref|YP_006922729.1|	-	4.1e-22	77.9	0.1	7.5e-22	77.0	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Regulator_TrmB	PF11495.8	gi|410670358|ref|YP_006922729.1|	-	4.8e-06	25.9	0.0	0.00019	20.7	0.0	2.1	1	1	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|410670358|ref|YP_006922729.1|	-	3.8e-05	23.4	0.0	7.5e-05	22.5	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|410670358|ref|YP_006922729.1|	-	0.00033	20.1	0.0	0.00061	19.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|410670358|ref|YP_006922729.1|	-	0.00038	20.3	0.0	0.00063	19.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_CodY	PF08222.11	gi|410670358|ref|YP_006922729.1|	-	0.00038	20.0	0.0	0.00085	18.8	0.0	1.5	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
HTH_20	PF12840.7	gi|410670358|ref|YP_006922729.1|	-	0.00068	19.6	0.0	0.0015	18.5	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|410670358|ref|YP_006922729.1|	-	0.0057	17.0	0.0	0.011	16.0	0.0	1.5	1	0	0	1	1	1	1	Penicillinase	repressor
MarR	PF01047.22	gi|410670358|ref|YP_006922729.1|	-	0.011	15.6	0.0	0.02	14.8	0.0	1.4	1	0	0	1	1	1	0	MarR	family
DUF505	PF04458.12	gi|410670358|ref|YP_006922729.1|	-	0.021	13.3	0.0	0.032	12.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
LexA_DNA_bind	PF01726.16	gi|410670358|ref|YP_006922729.1|	-	0.036	13.8	0.0	0.097	12.5	0.0	1.8	1	1	0	1	1	1	0	LexA	DNA	binding	domain
Rrf2	PF02082.20	gi|410670358|ref|YP_006922729.1|	-	0.051	13.9	0.0	0.12	12.7	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_28	PF13518.6	gi|410670358|ref|YP_006922729.1|	-	0.06	13.5	0.0	0.11	12.7	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
PadR	PF03551.14	gi|410670358|ref|YP_006922729.1|	-	0.072	13.1	0.0	0.16	12.0	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_5	PF01022.20	gi|410670358|ref|YP_006922729.1|	-	0.14	12.1	0.0	0.28	11.1	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
FUR	PF01475.19	gi|410670358|ref|YP_006922729.1|	-	0.14	12.3	0.0	6.2	7.0	0.0	2.3	1	1	1	2	2	2	0	Ferric	uptake	regulator	family
Pox_C7_F8A	PF03287.14	gi|410670358|ref|YP_006922729.1|	-	0.14	12.1	0.0	0.28	11.2	0.0	1.5	1	0	0	1	1	1	0	Poxvirus	C7/F8A	protein
HTH_29	PF13551.6	gi|410670358|ref|YP_006922729.1|	-	0.14	12.2	0.0	0.27	11.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_27	PF13463.6	gi|410670358|ref|YP_006922729.1|	-	0.17	12.4	0.1	5	7.7	0.0	2.3	1	1	1	2	2	2	0	Winged	helix	DNA-binding	domain
NPCBM_assoc	PF10633.9	gi|410670359|ref|YP_006922730.1|	-	2.4e-10	40.5	0.1	0.00095	19.4	0.0	3.3	3	0	0	3	3	3	2	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.11	gi|410670359|ref|YP_006922730.1|	-	0.0033	17.7	0.1	0.031	14.5	0.0	2.3	2	0	0	2	2	2	1	CARDB
PHTB1_C	PF14728.6	gi|410670359|ref|YP_006922730.1|	-	0.04	13.0	0.0	0.087	11.9	0.0	1.5	1	0	0	1	1	1	0	PTHB1	C-terminus
DUF11	PF01345.18	gi|410670360|ref|YP_006922731.1|	-	4.7e-07	30.0	5.1	0.00045	20.5	1.4	3.7	3	1	0	3	3	3	2	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|410670360|ref|YP_006922731.1|	-	3.3e-06	27.2	0.4	0.0023	18.1	0.1	3.4	4	0	0	4	4	4	2	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.11	gi|410670360|ref|YP_006922731.1|	-	4e-05	23.8	0.5	0.0049	17.1	0.1	2.4	2	0	0	2	2	2	1	CARDB
TRAP_beta	PF05753.14	gi|410670360|ref|YP_006922731.1|	-	0.0049	16.3	0.2	0.032	13.6	0.2	2.2	2	1	0	2	2	2	1	Translocon-associated	protein	beta	(TRAPB)
Glyco_hydro2_C5	PF18565.1	gi|410670360|ref|YP_006922731.1|	-	0.037	13.9	0.2	7.5	6.5	0.0	2.4	2	0	0	2	2	2	0	Glycoside	hydrolase	family	2	C-terminal	domain	5
ASH	PF15780.5	gi|410670360|ref|YP_006922731.1|	-	0.11	12.7	0.0	0.56	10.4	0.0	2.1	2	0	0	2	2	2	0	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
MMPL	PF03176.15	gi|410670361|ref|YP_006922732.1|	-	1.2e-58	198.6	18.3	3.2e-31	108.5	5.2	2.1	2	0	0	2	2	2	2	MMPL	family
Sterol-sensing	PF12349.8	gi|410670361|ref|YP_006922732.1|	-	6.5e-12	45.5	20.6	2e-07	31.0	0.2	2.7	3	0	0	3	3	3	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.18	gi|410670361|ref|YP_006922732.1|	-	6.5e-11	41.1	17.2	1.6e-07	29.9	5.6	2.2	2	0	0	2	2	2	2	Patched	family
ACR_tran	PF00873.19	gi|410670361|ref|YP_006922732.1|	-	6e-10	37.5	25.8	2.7e-06	25.4	12.3	2.1	2	0	0	2	2	2	2	AcrB/AcrD/AcrF	family
SecD_SecF	PF02355.16	gi|410670361|ref|YP_006922732.1|	-	2e-09	37.1	10.7	2e-09	37.1	10.7	2.3	2	0	0	2	2	2	1	Protein	export	membrane	protein
Trp_oprn_chp	PF09534.10	gi|410670361|ref|YP_006922732.1|	-	0.38	10.5	3.2	3.9	7.2	0.0	2.8	1	1	1	2	2	2	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
CD34_antigen	PF06365.12	gi|410670361|ref|YP_006922732.1|	-	4.9	6.7	4.2	4.6	6.8	0.3	2.8	2	1	0	2	2	2	0	CD34/Podocalyxin	family
DUF2207	PF09972.9	gi|410670361|ref|YP_006922732.1|	-	8	5.1	23.8	4.5	5.9	0.1	4.8	4	1	0	4	4	4	0	Predicted	membrane	protein	(DUF2207)
tRNA_NucTransf2	PF09249.11	gi|410670362|ref|YP_006922733.1|	-	6.7e-45	152.0	0.0	1.3e-44	151.0	0.0	1.5	1	0	0	1	1	1	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.23	gi|410670362|ref|YP_006922733.1|	-	2.2e-13	50.3	0.0	4.7e-13	49.2	0.0	1.6	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
SMODS	PF18144.1	gi|410670362|ref|YP_006922733.1|	-	0.0007	19.8	0.0	0.0013	18.9	0.0	1.4	1	0	0	1	1	1	1	Second	Messenger	Oligonucleotide	or	Dinucleotide	Synthetase	domain
OGG_N	PF07934.12	gi|410670363|ref|YP_006922734.1|	-	2e-21	76.3	1.5	1.4e-20	73.6	1.5	2.1	1	1	0	1	1	1	1	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
HhH-GPD	PF00730.25	gi|410670363|ref|YP_006922734.1|	-	3.9e-08	33.7	0.0	5.8e-08	33.2	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|410670363|ref|YP_006922734.1|	-	0.019	14.8	0.0	0.039	13.8	0.0	1.5	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
ADP_PFK_GK	PF04587.15	gi|410670364|ref|YP_006922735.1|	-	7.4e-107	357.5	0.0	8.3e-107	357.4	0.0	1.0	1	0	0	1	1	1	1	ADP-specific	Phosphofructokinase/Glucokinase	conserved	region
ADP_PFK_GK	PF04587.15	gi|410670365|ref|YP_006922736.1|	-	2.8e-114	382.0	0.0	3.2e-114	381.8	0.0	1.0	1	0	0	1	1	1	1	ADP-specific	Phosphofructokinase/Glucokinase	conserved	region
SPC12	PF06645.13	gi|410670367|ref|YP_006922738.1|	-	0.011	15.8	2.6	0.02	15.0	2.6	1.3	1	0	0	1	1	1	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
YpmT	PF17431.2	gi|410670367|ref|YP_006922738.1|	-	0.27	11.3	0.2	0.27	11.3	0.2	2.2	2	0	0	2	2	2	0	Uncharacterized	YmpT-like
SlpA	PF03217.14	gi|410670368|ref|YP_006922739.1|	-	0.075	13.6	1.4	0.17	12.5	1.4	1.6	1	0	0	1	1	1	0	Surface	later	protein	A	domain
Semialdhyde_dh	PF01118.24	gi|410670369|ref|YP_006922740.1|	-	3.6e-11	43.5	0.0	1.4e-09	38.4	0.0	2.3	1	1	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
ArgJ	PF01960.18	gi|410670370|ref|YP_006922741.1|	-	2.2e-135	451.2	11.3	2.5e-135	451.0	11.3	1.0	1	0	0	1	1	1	1	ArgJ	family
CBS	PF00571.28	gi|410670371|ref|YP_006922742.1|	-	2.6e-33	114.3	3.6	3.4e-18	65.8	0.4	2.1	2	0	0	2	2	2	2	CBS	domain
Aromatic_hydrox	PF11723.8	gi|410670371|ref|YP_006922742.1|	-	0.071	12.6	0.0	0.08	12.4	0.0	1.2	1	0	0	1	1	1	0	Homotrimeric	ring	hydroxylase
DDE_Tnp_IS1	PF03400.13	gi|410670372|ref|YP_006922743.1|	-	1.2e-08	35.4	0.1	1.3e-08	35.3	0.1	1.0	1	0	0	1	1	1	1	IS1	transposase
TERT_thumb	PF17984.1	gi|410670372|ref|YP_006922743.1|	-	0.022	14.6	0.1	0.022	14.6	0.1	1.1	1	0	0	1	1	1	0	Telomerase	reverse	transcriptase	thumb	DNA	binding	domain
EPO_TPO	PF00758.18	gi|410670372|ref|YP_006922743.1|	-	0.068	13.2	0.0	0.084	12.9	0.0	1.1	1	0	0	1	1	1	0	Erythropoietin/thrombopoietin
SIMPL	PF04402.14	gi|410670373|ref|YP_006922744.1|	-	1.9e-48	165.6	7.0	2.2e-48	165.4	7.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
zf-MYST	PF17772.1	gi|410670373|ref|YP_006922744.1|	-	0.075	12.7	0.0	0.12	11.9	0.0	1.3	1	0	0	1	1	1	0	MYST	family	zinc	finger	domain
CcmE	PF03100.15	gi|410670373|ref|YP_006922744.1|	-	0.12	12.4	0.3	0.23	11.4	0.3	1.5	1	0	0	1	1	1	0	CcmE
DUF810	PF05664.11	gi|410670373|ref|YP_006922744.1|	-	0.13	10.7	0.0	0.15	10.6	0.0	1.1	1	0	0	1	1	1	0	Plant	family	of	unknown	function	(DUF810)
DUF4252	PF14060.6	gi|410670374|ref|YP_006922745.1|	-	0.057	13.3	0.6	0.066	13.1	0.6	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4252)
DUF2148	PF09918.9	gi|410670377|ref|YP_006922748.1|	-	8.7e-30	102.6	1.3	1.4e-29	101.9	1.3	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	containing	a	ferredoxin	domain	(DUF2148)
FeS	PF04060.13	gi|410670377|ref|YP_006922748.1|	-	0.00036	20.1	0.8	0.00084	18.9	0.8	1.6	1	0	0	1	1	1	1	Putative	Fe-S	cluster
Nitroreductase	PF00881.24	gi|410670377|ref|YP_006922748.1|	-	0.13	12.3	0.0	0.16	12.0	0.0	1.4	1	1	0	1	1	1	0	Nitroreductase	family
LDcluster4	PF18306.1	gi|410670377|ref|YP_006922748.1|	-	0.13	11.8	0.0	0.18	11.4	0.0	1.3	1	0	0	1	1	1	0	SLOG	cluster4	family
cobW	PF02492.19	gi|410670378|ref|YP_006922749.1|	-	1.9e-39	135.1	1.7	2.6e-39	134.6	1.7	1.2	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
MeaB	PF03308.16	gi|410670378|ref|YP_006922749.1|	-	0.00099	18.2	3.3	0.0026	16.8	0.7	2.3	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
CbiA	PF01656.23	gi|410670378|ref|YP_006922749.1|	-	0.0026	17.8	0.1	0.058	13.5	0.2	2.4	2	1	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
SRP54	PF00448.22	gi|410670378|ref|YP_006922749.1|	-	0.0026	17.4	0.2	0.0048	16.5	0.2	1.4	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
ATP_bind_1	PF03029.17	gi|410670378|ref|YP_006922749.1|	-	0.0086	15.9	1.4	0.37	10.5	0.1	2.3	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
MobB	PF03205.14	gi|410670378|ref|YP_006922749.1|	-	0.015	15.2	1.1	0.054	13.4	1.0	2.0	1	1	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DUF1611	PF07755.11	gi|410670378|ref|YP_006922749.1|	-	0.029	13.6	0.7	0.17	11.2	0.2	2.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
MGDG_synth	PF06925.11	gi|410670378|ref|YP_006922749.1|	-	0.035	14.2	0.0	1.7	8.7	0.0	2.4	2	1	0	2	2	2	0	Monogalactosyldiacylglycerol	(MGDG)	synthase
Flg_hook	PF02120.16	gi|410670378|ref|YP_006922749.1|	-	0.064	13.1	0.0	0.77	9.7	0.0	2.2	2	0	0	2	2	2	0	Flagellar	hook-length	control	protein	FliK
AAA_30	PF13604.6	gi|410670378|ref|YP_006922749.1|	-	0.11	12.3	1.1	0.16	11.6	0.2	1.7	2	0	0	2	2	2	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|410670378|ref|YP_006922749.1|	-	0.11	12.3	1.4	0.22	11.4	0.1	2.0	2	0	0	2	2	2	0	RsgA	GTPase
GTP_EFTU	PF00009.27	gi|410670378|ref|YP_006922749.1|	-	0.13	11.8	3.3	0.11	12.0	0.4	2.2	2	1	0	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
Pox_A32	PF04665.12	gi|410670378|ref|YP_006922749.1|	-	0.2	11.1	1.4	0.45	9.9	0.2	2.1	3	0	0	3	3	3	0	Poxvirus	A32	protein
TrwB_AAD_bind	PF10412.9	gi|410670378|ref|YP_006922749.1|	-	0.23	10.4	0.8	0.35	9.7	0.8	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
T2SSE	PF00437.20	gi|410670378|ref|YP_006922749.1|	-	0.28	10.2	2.5	0.36	9.8	0.3	2.1	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
AAA_19	PF13245.6	gi|410670378|ref|YP_006922749.1|	-	0.58	10.5	3.6	0.34	11.3	0.4	2.1	2	1	0	2	2	2	0	AAA	domain
HATPase_c	PF02518.26	gi|410670379|ref|YP_006922750.1|	-	1.2e-31	109.5	0.1	2.8e-31	108.3	0.1	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_2	PF13185.6	gi|410670379|ref|YP_006922750.1|	-	5.8e-31	107.6	0.0	3.5e-30	105.1	0.0	2.3	2	0	0	2	2	2	1	GAF	domain
PAS	PF00989.25	gi|410670379|ref|YP_006922750.1|	-	1.2e-24	86.5	0.0	1.4e-08	34.7	0.0	3.8	4	0	0	4	4	3	3	PAS	fold
PAS_3	PF08447.12	gi|410670379|ref|YP_006922750.1|	-	1.8e-20	73.0	0.0	2.3e-14	53.5	0.1	3.6	3	0	0	3	3	3	3	PAS	fold
PAS_9	PF13426.7	gi|410670379|ref|YP_006922750.1|	-	1.1e-19	70.6	0.3	6.4e-07	29.6	0.1	3.8	3	0	0	3	3	3	3	PAS	domain
HisKA	PF00512.25	gi|410670379|ref|YP_006922750.1|	-	9.4e-18	64.0	0.4	2.8e-17	62.5	0.0	2.0	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
MEDS	PF14417.6	gi|410670379|ref|YP_006922750.1|	-	1e-17	64.4	0.0	2.2e-17	63.4	0.0	1.6	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
PAS_4	PF08448.10	gi|410670379|ref|YP_006922750.1|	-	1.6e-17	63.7	0.0	1.5e-06	28.4	0.0	3.6	3	0	0	3	3	3	3	PAS	fold
PAS_8	PF13188.7	gi|410670379|ref|YP_006922750.1|	-	4.1e-13	49.0	0.0	3.6e-06	26.9	0.0	2.8	2	0	0	2	2	2	2	PAS	domain
GAF	PF01590.26	gi|410670379|ref|YP_006922750.1|	-	3.1e-07	31.1	0.0	6.7e-07	30.0	0.0	1.5	1	0	0	1	1	1	1	GAF	domain
PAS_7	PF12860.7	gi|410670379|ref|YP_006922750.1|	-	7e-06	26.2	0.0	0.049	13.8	0.0	3.1	2	1	0	2	2	2	2	PAS	fold
GAF_3	PF13492.6	gi|410670379|ref|YP_006922750.1|	-	7.9e-05	23.0	0.0	0.00022	21.6	0.0	1.8	1	0	0	1	1	1	1	GAF	domain
HATPase_c_5	PF14501.6	gi|410670379|ref|YP_006922750.1|	-	0.00085	19.2	0.0	0.0093	15.9	0.0	2.8	3	0	0	3	3	3	1	GHKL	domain
PAS_10	PF13596.6	gi|410670379|ref|YP_006922750.1|	-	0.0031	18.1	0.0	0.07	13.7	0.0	2.6	2	0	0	2	2	2	1	PAS	domain
LMBR1	PF04791.16	gi|410670379|ref|YP_006922750.1|	-	0.019	13.9	0.5	0.03	13.3	0.5	1.2	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
HATPase_c_2	PF13581.6	gi|410670379|ref|YP_006922750.1|	-	0.094	12.7	0.0	0.24	11.4	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
Nuc_deoxyrib_tr	PF05014.15	gi|410670381|ref|YP_006922752.1|	-	5.5e-28	97.6	0.0	6.2e-28	97.4	0.0	1.1	1	0	0	1	1	1	1	Nucleoside	2-deoxyribosyltransferase
Nuc_deoxyri_tr2	PF15891.5	gi|410670381|ref|YP_006922752.1|	-	5e-20	71.8	0.0	6.1e-20	71.5	0.0	1.1	1	0	0	1	1	1	1	Nucleoside	2-deoxyribosyltransferase	like
TIR_2	PF13676.6	gi|410670381|ref|YP_006922752.1|	-	0.019	15.6	0.0	0.079	13.6	0.0	1.8	1	1	0	1	1	1	0	TIR	domain
SBF	PF01758.16	gi|410670382|ref|YP_006922753.1|	-	1.9e-42	145.2	22.1	1.9e-42	145.2	22.1	1.9	3	0	0	3	3	3	1	Sodium	Bile	acid	symporter	family
SBF_like	PF13593.6	gi|410670382|ref|YP_006922753.1|	-	6.2e-18	65.2	25.9	7.3e-18	64.9	25.9	1.1	1	0	0	1	1	1	1	SBF-like	CPA	transporter	family	(DUF4137)
Mem_trans	PF03547.18	gi|410670382|ref|YP_006922753.1|	-	0.0025	16.3	8.5	0.0025	16.3	8.5	2.9	1	1	2	3	3	3	2	Membrane	transport	protein
AMMECR1	PF01871.17	gi|410670383|ref|YP_006922754.1|	-	2e-50	170.7	0.0	2.3e-50	170.4	0.0	1.1	1	0	0	1	1	1	1	AMMECR1
Imm45	PF15572.6	gi|410670383|ref|YP_006922754.1|	-	0.2	12.0	0.0	0.57	10.6	0.0	1.7	2	0	0	2	2	2	0	Immunity	protein	45
PGK	PF00162.19	gi|410670384|ref|YP_006922755.1|	-	1.1e-109	366.9	0.0	1.2e-109	366.7	0.0	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
FMN_red	PF03358.15	gi|410670385|ref|YP_006922756.1|	-	4.7e-34	117.4	0.0	6e-34	117.0	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|410670385|ref|YP_006922756.1|	-	3.3e-10	40.0	0.0	4e-10	39.7	0.0	1.2	1	0	0	1	1	1	1	Flavodoxin-like	fold
Flavodoxin_5	PF12724.7	gi|410670385|ref|YP_006922756.1|	-	0.1	12.9	0.0	0.14	12.4	0.0	1.3	1	0	0	1	1	1	0	Flavodoxin	domain
PgpA	PF04608.13	gi|410670385|ref|YP_006922756.1|	-	0.12	12.4	0.0	0.16	12.0	0.0	1.3	1	0	0	1	1	1	0	Phosphatidylglycerophosphatase	A
AAA_26	PF13500.6	gi|410670386|ref|YP_006922757.1|	-	1.4e-31	109.9	0.2	7e-31	107.6	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
DRTGG	PF07085.12	gi|410670386|ref|YP_006922757.1|	-	8.9e-30	102.6	0.1	2e-29	101.5	0.1	1.6	1	0	0	1	1	1	1	DRTGG	domain
CbiA	PF01656.23	gi|410670386|ref|YP_006922757.1|	-	0.00068	19.7	0.0	0.0028	17.7	0.0	1.9	2	1	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Hpr_kinase_N	PF02603.16	gi|410670386|ref|YP_006922757.1|	-	0.12	12.4	0.0	0.23	11.5	0.0	1.4	1	0	0	1	1	1	0	HPr	Serine	kinase	N	terminus
DUF1729	PF08354.10	gi|410670386|ref|YP_006922757.1|	-	0.17	10.7	0.0	0.28	10.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1729)
ATP-grasp_5	PF13549.6	gi|410670387|ref|YP_006922758.1|	-	5.6e-78	261.4	0.1	9.5e-77	257.4	0.1	2.6	3	0	0	3	3	3	1	ATP-grasp	domain
Succ_CoA_lig	PF13607.6	gi|410670387|ref|YP_006922758.1|	-	2.8e-57	192.4	2.0	9.6e-56	187.4	0.3	3.3	3	0	0	3	3	3	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|410670387|ref|YP_006922758.1|	-	2.1e-25	89.5	0.5	1.1e-24	87.2	0.5	2.3	2	0	0	2	2	2	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|410670387|ref|YP_006922758.1|	-	1.9e-12	47.7	0.5	1.9e-12	47.7	0.5	3.0	4	0	0	4	4	4	1	CoA	binding	domain
ATP-grasp_2	PF08442.10	gi|410670387|ref|YP_006922758.1|	-	0.0053	16.4	0.1	0.036	13.6	0.0	2.3	2	1	0	2	2	2	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|410670387|ref|YP_006922758.1|	-	0.026	14.0	0.0	0.052	13.0	0.0	1.5	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
GFO_IDH_MocA	PF01408.22	gi|410670387|ref|YP_006922758.1|	-	0.05	14.4	0.2	0.36	11.6	0.1	2.4	2	0	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
WRC	PF08879.10	gi|410670387|ref|YP_006922758.1|	-	0.057	13.1	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	WRC
ATP-synt_F	PF01990.17	gi|410670387|ref|YP_006922758.1|	-	0.74	10.2	4.1	6.5	7.2	0.1	3.8	4	1	0	4	4	4	0	ATP	synthase	(F/14-kDa)	subunit
F420_oxidored	PF03807.17	gi|410670387|ref|YP_006922758.1|	-	0.88	10.2	3.9	1	10.0	0.6	2.7	3	1	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
PsaX	PF08078.12	gi|410670388|ref|YP_006922759.1|	-	0.16	11.9	0.1	0.32	11.0	0.1	1.5	1	0	0	1	1	1	0	PsaX	family
Big_9	PF17963.1	gi|410670389|ref|YP_006922760.1|	-	2e-46	156.6	55.6	4.4e-09	37.0	2.5	8.1	8	1	0	8	8	8	7	Bacterial	Ig	domain
He_PIG	PF05345.12	gi|410670389|ref|YP_006922760.1|	-	4.3e-23	81.3	44.2	3e-08	33.7	3.1	11.7	11	1	0	11	11	11	6	Putative	Ig	domain
Cadherin_5	PF17892.1	gi|410670389|ref|YP_006922760.1|	-	3.6e-22	78.2	27.2	0.00014	21.8	0.2	7.9	8	0	0	8	8	8	6	Cadherin-like	domain
Cadherin_4	PF17803.1	gi|410670389|ref|YP_006922760.1|	-	1.9e-17	63.6	43.3	1.2e-05	25.8	0.5	8.1	7	1	0	7	7	7	4	Bacterial	cadherin-like	domain
Cadherin_3	PF16184.5	gi|410670389|ref|YP_006922760.1|	-	1.6e-05	24.9	11.8	2.2	8.3	0.7	7.4	7	1	1	8	8	8	3	Cadherin-like
PKD	PF00801.20	gi|410670389|ref|YP_006922760.1|	-	0.0021	17.9	18.4	0.59	10.0	0.1	7.9	7	3	0	7	7	7	2	PKD	domain
DUF2770	PF10968.8	gi|410670389|ref|YP_006922760.1|	-	0.065	13.2	0.8	0.13	12.3	0.8	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2770)
HGAL	PF15666.5	gi|410670389|ref|YP_006922760.1|	-	0.11	12.6	0.0	0.28	11.3	0.0	1.6	1	0	0	1	1	1	0	Germinal	center-associated	lymphoma
He_PIG	PF05345.12	gi|410670390|ref|YP_006922761.1|	-	2.1e-18	66.2	20.1	6.5e-06	26.2	0.1	6.0	5	1	0	5	5	5	4	Putative	Ig	domain
Big_9	PF17963.1	gi|410670390|ref|YP_006922761.1|	-	5.9e-13	49.4	9.8	5.6e-11	43.0	0.2	4.6	4	2	1	5	5	5	2	Bacterial	Ig	domain
Cadherin_5	PF17892.1	gi|410670390|ref|YP_006922761.1|	-	1.1e-09	38.1	8.5	1e-06	28.6	0.0	3.8	4	0	0	4	4	4	2	Cadherin-like	domain
Y_Y_Y	PF07495.13	gi|410670390|ref|YP_006922761.1|	-	0.014	15.4	0.0	0.11	12.5	0.0	2.6	1	0	0	1	1	1	0	Y_Y_Y	domain
Gly_rich	PF12810.7	gi|410670390|ref|YP_006922761.1|	-	0.031	14.2	14.3	0.06	13.3	14.3	1.5	1	0	0	1	1	1	0	Glycine	rich	protein
Toxin_ToxA	PF11584.8	gi|410670390|ref|YP_006922761.1|	-	0.17	11.9	4.1	0.87	9.6	0.2	2.7	2	0	0	2	2	2	0	Proteinaceous	host-selective	toxin	ToxA
Serglycin	PF04360.12	gi|410670390|ref|YP_006922761.1|	-	1.9	8.4	4.9	4.1	7.3	4.9	1.6	1	0	0	1	1	1	0	Serglycin
Big_2	PF02368.18	gi|410670391|ref|YP_006922762.1|	-	2.3e-14	53.0	14.7	2.3e-14	53.0	14.7	3.8	2	1	1	3	3	3	1	Bacterial	Ig-like	domain	(group	2)
Big_3	PF07523.12	gi|410670391|ref|YP_006922762.1|	-	0.00025	21.3	0.9	0.00025	21.3	0.9	4.3	3	2	1	4	4	4	1	Bacterial	Ig-like	domain	(group	3)
Gly_rich_SFCGS	PF14272.6	gi|410670391|ref|YP_006922762.1|	-	0.78	9.8	6.3	3.6	7.6	1.4	2.7	1	1	0	2	2	2	0	Glycine-rich	SFCGS
fn3	PF00041.21	gi|410670391|ref|YP_006922762.1|	-	0.83	10.0	5.6	14	6.1	0.0	4.5	4	2	0	4	4	4	0	Fibronectin	type	III	domain
CopC	PF04234.12	gi|410670391|ref|YP_006922762.1|	-	2.6	9.1	8.8	1.1	10.3	2.5	3.3	3	1	0	3	3	3	0	CopC	domain
Voltage_CLC	PF00654.20	gi|410670392|ref|YP_006922763.1|	-	3.3e-87	293.0	38.0	3.3e-87	293.0	38.0	2.0	1	1	1	2	2	2	2	Voltage	gated	chloride	channel
CBS	PF00571.28	gi|410670392|ref|YP_006922763.1|	-	6.4e-24	84.2	0.3	7.2e-11	42.4	0.1	2.6	2	0	0	2	2	2	2	CBS	domain
F-box	PF00646.33	gi|410670392|ref|YP_006922763.1|	-	0.13	12.1	0.4	0.37	10.7	0.0	2.0	2	0	0	2	2	2	0	F-box	domain
Radical_SAM	PF04055.21	gi|410670393|ref|YP_006922764.1|	-	3.1e-22	79.7	0.0	2.9e-20	73.3	0.0	2.2	2	0	0	2	2	2	2	Radical	SAM	superfamily
UPF0004	PF00919.20	gi|410670393|ref|YP_006922764.1|	-	4.6e-20	71.5	0.2	8.1e-20	70.7	0.2	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0004
FBPase_glpX	PF03320.13	gi|410670394|ref|YP_006922765.1|	-	8.3e-118	392.7	3.9	9.8e-118	392.5	3.9	1.0	1	0	0	1	1	1	1	Bacterial	fructose-1,6-bisphosphatase,	glpX-encoded
NAD_binding_10	PF13460.6	gi|410670394|ref|YP_006922765.1|	-	0.071	13.0	1.1	9	6.1	0.0	2.2	1	1	1	2	2	2	0	NAD(P)H-binding
CGI-121	PF08617.10	gi|410670395|ref|YP_006922766.1|	-	3.4e-11	43.6	0.1	4.4e-11	43.2	0.1	1.0	1	0	0	1	1	1	1	Kinase	binding	protein	CGI-121
tRNA-synt_1	PF00133.22	gi|410670396|ref|YP_006922767.1|	-	5.1e-61	206.7	0.1	8.7e-42	143.2	0.0	2.5	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.11	gi|410670396|ref|YP_006922767.1|	-	7.2e-25	87.5	0.4	1.3e-11	43.9	0.0	3.2	2	1	1	3	3	3	3	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|410670396|ref|YP_006922767.1|	-	9.4e-23	80.9	0.0	1.6e-22	80.1	0.0	1.4	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.19	gi|410670396|ref|YP_006922767.1|	-	1.1e-10	41.3	0.1	5e-07	29.4	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1_2	PF13603.6	gi|410670396|ref|YP_006922767.1|	-	9.3e-09	35.1	0.0	1.8e-08	34.1	0.0	1.4	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1f	PF01921.18	gi|410670396|ref|YP_006922767.1|	-	0.0089	15.0	0.0	0.017	14.0	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1d	PF00750.19	gi|410670396|ref|YP_006922767.1|	-	0.013	14.5	0.0	0.023	13.6	0.0	1.3	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(R)
HATPase_c	PF02518.26	gi|410670397|ref|YP_006922768.1|	-	6.4e-21	75.0	0.1	2e-20	73.4	0.1	1.9	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|410670397|ref|YP_006922768.1|	-	0.00024	21.1	0.2	0.00072	19.5	0.1	1.8	1	1	1	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
DUF2681	PF10883.8	gi|410670397|ref|YP_006922768.1|	-	0.0011	19.3	0.6	0.0025	18.2	0.0	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2681)
HATPase_c_3	PF13589.6	gi|410670397|ref|YP_006922768.1|	-	0.015	15.1	0.0	0.042	13.7	0.0	1.8	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
zf-C4H2	PF10146.9	gi|410670397|ref|YP_006922768.1|	-	1.5	9.1	4.4	2.2	8.5	4.4	1.2	1	0	0	1	1	1	0	Zinc	finger-containing	protein
CN_hydrolase	PF00795.22	gi|410670398|ref|YP_006922769.1|	-	1.9e-48	165.1	0.0	2.3e-48	164.8	0.0	1.0	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
Phage_AlpA	PF05930.12	gi|410670398|ref|YP_006922769.1|	-	0.062	13.1	0.0	0.13	12.1	0.0	1.6	1	0	0	1	1	1	0	Prophage	CP4-57	regulatory	protein	(AlpA)
DS	PF01916.17	gi|410670400|ref|YP_006922771.1|	-	2.2e-102	342.2	0.6	2.6e-102	342.0	0.6	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
ArsR	PF09824.9	gi|410670401|ref|YP_006922772.1|	-	4.5e-69	231.1	0.1	5.1e-69	230.9	0.1	1.0	1	0	0	1	1	1	1	ArsR	transcriptional	regulator
SMC_ScpB	PF04079.16	gi|410670401|ref|YP_006922772.1|	-	0.024	14.3	0.0	0.23	11.0	0.0	2.0	1	1	0	2	2	2	0	Segregation	and	condensation	complex	subunit	ScpB
DUF4988	PF16378.5	gi|410670401|ref|YP_006922772.1|	-	0.089	12.4	0.2	0.16	11.6	0.2	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function
Retrotrans_gag	PF03732.17	gi|410670401|ref|YP_006922772.1|	-	0.13	12.6	0.0	0.18	12.1	0.0	1.3	1	0	0	1	1	1	0	Retrotransposon	gag	protein
HTH_24	PF13412.6	gi|410670402|ref|YP_006922773.1|	-	2.3e-09	36.7	0.0	7.8e-09	35.0	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|410670402|ref|YP_006922773.1|	-	6.3e-09	35.6	0.0	1.4e-08	34.4	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|410670402|ref|YP_006922773.1|	-	2.1e-07	30.8	0.0	4.7e-07	29.7	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
MarR	PF01047.22	gi|410670402|ref|YP_006922773.1|	-	1.3e-06	28.2	0.0	5.1e-06	26.3	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_Crp_2	PF13545.6	gi|410670402|ref|YP_006922773.1|	-	1.8e-05	24.6	0.1	6.7e-05	22.8	0.0	2.0	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_3	PF01381.22	gi|410670402|ref|YP_006922773.1|	-	3e-05	24.0	0.2	0.002	18.1	0.0	2.5	2	0	0	2	2	2	1	Helix-turn-helix
HTH_23	PF13384.6	gi|410670402|ref|YP_006922773.1|	-	0.0014	18.4	0.0	0.0031	17.3	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|410670402|ref|YP_006922773.1|	-	0.0016	18.5	0.0	0.0052	16.9	0.0	1.9	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|410670402|ref|YP_006922773.1|	-	0.0019	18.6	0.1	0.0075	16.7	0.0	2.0	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
Rrf2	PF02082.20	gi|410670402|ref|YP_006922773.1|	-	0.0019	18.5	0.0	0.0055	17.0	0.0	1.7	1	0	0	1	1	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|410670402|ref|YP_006922773.1|	-	0.0051	17.0	0.0	0.015	15.5	0.0	1.8	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
RPA_C	PF08784.11	gi|410670402|ref|YP_006922773.1|	-	0.0083	16.8	0.1	0.017	15.7	0.1	1.5	1	0	0	1	1	1	1	Replication	protein	A	C	terminal
HTH_IclR	PF09339.10	gi|410670402|ref|YP_006922773.1|	-	0.013	15.3	0.0	0.029	14.2	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|410670402|ref|YP_006922773.1|	-	0.014	15.2	0.1	0.075	12.9	0.0	2.2	2	0	0	2	2	2	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
GntR	PF00392.21	gi|410670402|ref|YP_006922773.1|	-	0.016	14.9	0.0	0.056	13.1	0.0	2.0	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
Mnd1	PF03962.15	gi|410670402|ref|YP_006922773.1|	-	0.02	15.2	0.0	0.054	13.8	0.0	1.7	1	0	0	1	1	1	0	Mnd1	HTH	domain
HTH_10	PF04967.12	gi|410670402|ref|YP_006922773.1|	-	0.026	14.3	0.0	0.065	13.1	0.0	1.6	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_36	PF13730.6	gi|410670402|ref|YP_006922773.1|	-	0.036	14.0	0.0	0.074	13.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
TetR_C_7	PF14246.6	gi|410670402|ref|YP_006922773.1|	-	0.037	14.1	0.0	0.072	13.1	0.0	1.5	1	0	0	1	1	1	0	AefR-like	transcriptional	repressor,	C-terminal	domain
DUF4364	PF14277.6	gi|410670402|ref|YP_006922773.1|	-	0.044	13.5	0.0	0.065	13.0	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_13	PF11972.8	gi|410670402|ref|YP_006922773.1|	-	0.054	13.6	0.0	0.13	12.3	0.0	1.7	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_AsnC-type	PF13404.6	gi|410670402|ref|YP_006922773.1|	-	0.086	12.7	0.1	0.34	10.8	0.0	2.2	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
HTH_40	PF14493.6	gi|410670402|ref|YP_006922773.1|	-	0.1	13.1	0.1	0.26	11.8	0.1	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
FaeA	PF04703.12	gi|410670402|ref|YP_006922773.1|	-	0.13	12.6	0.5	0.29	11.5	0.0	1.8	2	0	0	2	2	1	0	FaeA-like	protein
Metallophos_2	PF12850.7	gi|410670403|ref|YP_006922774.1|	-	1.5e-26	93.5	0.0	1.9e-26	93.2	0.0	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|410670403|ref|YP_006922774.1|	-	1.5e-06	28.8	0.1	5.5e-05	23.8	0.0	2.1	1	1	1	2	2	2	1	Calcineurin-like	phosphoesterase
Myb_DNA-bind_4	PF13837.6	gi|410670406|ref|YP_006922777.1|	-	0.038	14.4	0.2	0.079	13.3	0.2	1.6	1	0	0	1	1	1	0	Myb/SANT-like	DNA-binding	domain
DUF4859	PF16151.5	gi|410670406|ref|YP_006922777.1|	-	0.058	13.3	0.3	0.098	12.5	0.3	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4859)
tRNA_anti-codon	PF01336.25	gi|410670406|ref|YP_006922777.1|	-	0.069	13.2	0.9	0.31	11.1	0.2	2.5	2	1	0	2	2	2	0	OB-fold	nucleic	acid	binding	domain
zf-RING_7	PF02591.15	gi|410670406|ref|YP_006922777.1|	-	0.083	13.1	0.4	1.2	9.4	0.1	2.4	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
HH_signal	PF01085.18	gi|410670406|ref|YP_006922777.1|	-	0.1	12.2	0.1	0.89	9.2	0.1	2.0	2	0	0	2	2	2	0	Hedgehog	amino-terminal	signalling	domain
AA_permease_2	PF13520.6	gi|410670407|ref|YP_006922778.1|	-	6.4e-50	170.2	49.1	8.8e-50	169.8	49.1	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|410670407|ref|YP_006922778.1|	-	2.9e-43	148.2	44.5	4.4e-43	147.6	44.5	1.2	1	0	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.26	gi|410670407|ref|YP_006922778.1|	-	2.2e-11	44.4	0.0	0.00034	21.2	0.0	2.4	2	0	0	2	2	2	2	Universal	stress	protein	family
Spore_permease	PF03845.13	gi|410670407|ref|YP_006922778.1|	-	1.2e-10	40.7	24.0	1.2e-10	40.7	24.0	2.3	2	0	0	2	2	2	1	Spore	germination	protein
MOR2-PAG1_C	PF14225.6	gi|410670407|ref|YP_006922778.1|	-	0.045	13.6	0.0	12	5.7	0.0	2.3	2	0	0	2	2	2	0	Cell	morphogenesis	C-terminal
DeoC	PF01791.9	gi|410670408|ref|YP_006922779.1|	-	6.3e-51	173.3	0.0	7.5e-51	173.0	0.0	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
HATPase_c	PF02518.26	gi|410670409|ref|YP_006922780.1|	-	1.1e-29	103.2	0.0	1.6e-29	102.6	0.0	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|410670409|ref|YP_006922780.1|	-	1.6e-11	44.0	0.0	3e-11	43.2	0.0	1.5	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.6	gi|410670409|ref|YP_006922780.1|	-	0.00025	20.9	0.1	0.00052	19.9	0.1	1.5	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_3	PF13589.6	gi|410670409|ref|YP_006922780.1|	-	0.00039	20.2	0.0	0.00063	19.6	0.0	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|410670409|ref|YP_006922780.1|	-	0.079	12.9	0.0	0.14	12.2	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
CRM1_repeat_2	PF18784.1	gi|410670410|ref|YP_006922781.1|	-	0.053	13.2	0.6	0.37	10.5	0.2	2.1	2	0	0	2	2	2	0	CRM1	/	Exportin	repeat	2
RPA_C	PF08784.11	gi|410670411|ref|YP_006922782.1|	-	0.0015	19.2	0.0	0.0027	18.3	0.0	1.4	1	0	0	1	1	1	1	Replication	protein	A	C	terminal
tRNA_anti-codon	PF01336.25	gi|410670411|ref|YP_006922782.1|	-	0.046	13.7	0.0	0.087	12.8	0.0	1.4	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
tRNA_anti-codon	PF01336.25	gi|410670412|ref|YP_006922783.1|	-	7.8e-08	32.2	1.5	0.045	13.7	0.0	4.1	4	0	0	4	4	4	2	OB-fold	nucleic	acid	binding	domain
Flavodoxin_1	PF00258.25	gi|410670413|ref|YP_006922784.1|	-	3.5e-14	53.2	0.0	1.3e-13	51.4	0.0	1.8	1	1	0	1	1	1	1	Flavodoxin
Flavodoxin_5	PF12724.7	gi|410670413|ref|YP_006922784.1|	-	7.6e-11	42.4	0.0	1.5e-10	41.5	0.0	1.5	1	1	0	1	1	1	1	Flavodoxin	domain
Flavodoxin_3	PF12641.7	gi|410670413|ref|YP_006922784.1|	-	2e-05	24.3	0.0	2.8e-05	23.9	0.0	1.3	1	0	0	1	1	1	1	Flavodoxin	domain
FMN_red	PF03358.15	gi|410670413|ref|YP_006922784.1|	-	0.0006	19.6	0.4	0.23	11.2	0.4	2.2	1	1	0	1	1	1	1	NADPH-dependent	FMN	reductase
PTS_IIB	PF02302.17	gi|410670413|ref|YP_006922784.1|	-	0.0018	18.9	0.0	0.0037	17.9	0.0	1.5	1	0	0	1	1	1	1	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
CBFD_NFYB_HMF	PF00808.23	gi|410670414|ref|YP_006922785.1|	-	6.8e-16	58.3	0.3	8e-16	58.1	0.3	1.0	1	0	0	1	1	1	1	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.24	gi|410670414|ref|YP_006922785.1|	-	2.1e-11	44.3	0.3	2.2e-11	44.2	0.3	1.1	1	0	0	1	1	1	1	Core	histone	H2A/H2B/H3/H4
Bromo_TP	PF07524.13	gi|410670414|ref|YP_006922785.1|	-	1.2e-06	28.4	0.0	1.4e-06	28.2	0.0	1.1	1	0	0	1	1	1	1	Bromodomain	associated
CENP-S	PF15630.6	gi|410670414|ref|YP_006922785.1|	-	5.4e-06	26.7	0.0	6.3e-06	26.5	0.0	1.1	1	0	0	1	1	1	1	CENP-S	protein
CENP-T_C	PF15511.6	gi|410670414|ref|YP_006922785.1|	-	5.7e-06	26.4	0.0	6.3e-06	26.3	0.0	1.1	1	0	0	1	1	1	1	Centromere	kinetochore	component	CENP-T	histone	fold
TFIID-31kDa	PF02291.15	gi|410670414|ref|YP_006922785.1|	-	9.3e-06	25.7	0.0	1.1e-05	25.5	0.0	1.0	1	0	0	1	1	1	1	Transcription	initiation	factor	IID,	31kD	subunit
TAF	PF02969.17	gi|410670414|ref|YP_006922785.1|	-	0.0001	22.4	0.3	0.00011	22.3	0.3	1.1	1	0	0	1	1	1	1	TATA	box	binding	protein	associated	factor	(TAF)
Peptidase_C39	PF03412.15	gi|410670414|ref|YP_006922785.1|	-	0.019	14.8	0.1	0.024	14.5	0.1	1.0	1	0	0	1	1	1	0	Peptidase	C39	family
TFIID-18kDa	PF02269.16	gi|410670414|ref|YP_006922785.1|	-	0.02	14.9	0.0	0.023	14.7	0.0	1.1	1	0	0	1	1	1	0	Transcription	initiation	factor	IID,	18kD	subunit
DUF1931	PF09123.11	gi|410670414|ref|YP_006922785.1|	-	0.077	13.1	0.1	0.082	13.0	0.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1931)
Sm_multidrug_ex	PF06695.11	gi|410670415|ref|YP_006922786.1|	-	4.5e-41	140.3	2.0	6.3e-41	139.8	2.0	1.2	1	0	0	1	1	1	1	Putative	small	multi-drug	export	protein
Rep_fac_C	PF08542.11	gi|410670416|ref|YP_006922787.1|	-	1.5e-24	86.2	0.0	3e-24	85.2	0.0	1.5	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
AAA	PF00004.29	gi|410670416|ref|YP_006922787.1|	-	2.2e-17	63.7	0.0	7.9e-17	61.9	0.0	1.9	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta2	PF13177.6	gi|410670416|ref|YP_006922787.1|	-	1.8e-15	57.1	0.0	7.6e-11	42.1	0.0	2.5	2	1	1	3	3	3	2	DNA	polymerase	III,	delta	subunit
AAA_16	PF13191.6	gi|410670416|ref|YP_006922787.1|	-	2e-06	28.3	0.3	0.0012	19.3	0.0	2.8	2	1	1	3	3	3	1	AAA	ATPase	domain
RuvB_N	PF05496.12	gi|410670416|ref|YP_006922787.1|	-	5e-06	26.4	0.1	6.2e-05	22.8	0.0	2.5	2	1	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_14	PF13173.6	gi|410670416|ref|YP_006922787.1|	-	1e-05	25.6	0.0	2e-05	24.6	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_3	PF07726.11	gi|410670416|ref|YP_006922787.1|	-	1.8e-05	24.6	0.0	4.2e-05	23.4	0.0	1.6	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_assoc_2	PF16193.5	gi|410670416|ref|YP_006922787.1|	-	6.9e-05	23.1	0.2	0.00014	22.1	0.2	1.6	1	0	0	1	1	1	1	AAA	C-terminal	domain
ResIII	PF04851.15	gi|410670416|ref|YP_006922787.1|	-	8.9e-05	22.6	0.0	0.00042	20.4	0.0	2.0	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_18	PF13238.6	gi|410670416|ref|YP_006922787.1|	-	0.00015	22.3	0.0	0.043	14.4	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
TIP49	PF06068.13	gi|410670416|ref|YP_006922787.1|	-	0.00047	19.5	0.0	0.0016	17.7	0.0	1.8	1	1	1	2	2	2	1	TIP49	P-loop	domain
AAA_22	PF13401.6	gi|410670416|ref|YP_006922787.1|	-	0.0034	17.6	0.6	3.2	8.0	0.0	3.1	2	2	1	3	3	3	1	AAA	domain
DNA_pol3_delta	PF06144.13	gi|410670416|ref|YP_006922787.1|	-	0.0047	16.7	0.0	0.0082	15.9	0.0	1.4	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
AAA_5	PF07728.14	gi|410670416|ref|YP_006922787.1|	-	0.0047	16.9	0.0	0.052	13.5	0.0	2.4	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.21	gi|410670416|ref|YP_006922787.1|	-	0.0079	15.6	0.0	1.4	8.3	0.0	2.4	1	1	1	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
IstB_IS21	PF01695.17	gi|410670416|ref|YP_006922787.1|	-	0.011	15.5	0.0	0.058	13.1	0.0	2.1	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
MCM	PF00493.23	gi|410670416|ref|YP_006922787.1|	-	0.017	14.2	0.0	0.025	13.7	0.0	1.3	1	0	0	1	1	1	0	MCM	P-loop	domain
Sigma54_activat	PF00158.26	gi|410670416|ref|YP_006922787.1|	-	0.022	14.4	0.0	8.7	6.0	0.0	2.5	2	0	0	2	2	2	0	Sigma-54	interaction	domain
SNF2_N	PF00176.23	gi|410670416|ref|YP_006922787.1|	-	0.023	13.5	0.0	0.076	11.7	0.0	1.7	1	1	1	2	2	2	0	SNF2	family	N-terminal	domain
AAA_19	PF13245.6	gi|410670416|ref|YP_006922787.1|	-	0.023	15.0	0.2	2.6	8.4	0.0	2.6	2	1	1	3	3	3	0	AAA	domain
AAA_2	PF07724.14	gi|410670416|ref|YP_006922787.1|	-	0.026	14.6	0.0	0.091	12.9	0.0	1.9	2	0	0	2	2	2	0	AAA	domain	(Cdc48	subfamily)
AAA_24	PF13479.6	gi|410670416|ref|YP_006922787.1|	-	0.045	13.5	0.0	0.15	11.8	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|410670416|ref|YP_006922787.1|	-	0.047	13.2	0.0	0.094	12.2	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_11	PF13086.6	gi|410670416|ref|YP_006922787.1|	-	0.055	13.3	0.0	0.089	12.6	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
Rad17	PF03215.15	gi|410670416|ref|YP_006922787.1|	-	0.11	12.4	0.0	0.27	11.1	0.0	1.6	1	1	0	1	1	1	0	Rad17	P-loop	domain
RNA_helicase	PF00910.22	gi|410670416|ref|YP_006922787.1|	-	0.15	12.5	0.0	0.35	11.3	0.0	1.6	2	0	0	2	2	1	0	RNA	helicase
Peptidase_S51	PF03575.17	gi|410670417|ref|YP_006922788.1|	-	4.8e-52	176.6	0.0	5.6e-52	176.4	0.0	1.0	1	0	0	1	1	1	1	Peptidase	family	S51
GATase_3	PF07685.14	gi|410670417|ref|YP_006922788.1|	-	5.5e-05	22.8	0.0	7e-05	22.5	0.0	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
DUF4870	PF09685.10	gi|410670418|ref|YP_006922789.1|	-	0.00028	21.0	6.9	0.00037	20.6	6.9	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4870)
TIC20	PF16166.5	gi|410670418|ref|YP_006922789.1|	-	0.023	14.5	4.7	0.03	14.1	4.7	1.2	1	0	0	1	1	1	0	Chloroplast	import	apparatus	Tic20-like
Fer4	PF00037.27	gi|410670419|ref|YP_006922790.1|	-	3.5e-18	64.6	51.8	3.6e-08	32.9	4.7	6.6	7	0	0	7	7	7	4	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|410670419|ref|YP_006922790.1|	-	8.2e-15	54.2	41.8	6.2e-05	22.9	0.9	5.7	5	0	0	5	5	5	4	4Fe-4S	binding	domain
FeS	PF04060.13	gi|410670419|ref|YP_006922790.1|	-	6.3e-14	51.3	2.7	6.3e-14	51.3	2.7	4.7	4	2	0	4	4	4	1	Putative	Fe-S	cluster
Fer4_7	PF12838.7	gi|410670419|ref|YP_006922790.1|	-	2.1e-13	50.6	36.6	6.3e-08	33.1	12.3	4.6	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410670419|ref|YP_006922790.1|	-	1.1e-11	44.7	26.2	1.2e-07	31.8	12.9	3.9	3	2	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410670419|ref|YP_006922790.1|	-	3.8e-11	42.4	45.7	4.8e-05	23.2	2.6	5.9	5	0	0	5	5	5	4	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410670419|ref|YP_006922790.1|	-	1e-10	41.6	39.1	1.6e-05	25.0	5.8	4.4	3	1	1	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410670419|ref|YP_006922790.1|	-	3e-07	30.5	47.4	0.0012	18.9	4.1	5.4	3	2	2	5	5	5	4	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410670419|ref|YP_006922790.1|	-	7.3e-07	30.0	41.0	0.0067	17.3	1.5	5.0	5	0	0	5	5	4	3	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.7	gi|410670419|ref|YP_006922790.1|	-	0.00035	20.9	50.0	0.007	16.8	1.1	6.2	6	0	0	6	6	6	4	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|410670419|ref|YP_006922790.1|	-	0.00042	20.8	34.0	0.0075	16.8	15.3	4.7	3	2	1	4	4	3	3	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|410670419|ref|YP_006922790.1|	-	0.0059	17.1	39.7	0.038	14.5	4.5	5.2	4	2	1	5	5	5	3	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|410670419|ref|YP_006922790.1|	-	0.023	15.4	2.0	0.023	15.4	2.0	5.8	4	1	0	4	4	4	0	4Fe-4S	single	cluster	domain
Fer4_8	PF13183.6	gi|410670419|ref|YP_006922790.1|	-	0.15	12.5	46.5	0.092	13.2	15.2	4.5	2	2	2	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|410670419|ref|YP_006922790.1|	-	5.5	7.9	41.1	1.2	10.0	1.7	4.9	4	2	1	5	5	5	0	4Fe-4S	dicluster	domain
Rnf-Nqr	PF02508.14	gi|410670420|ref|YP_006922791.1|	-	9.1e-54	182.1	23.6	1e-53	181.9	23.6	1.0	1	0	0	1	1	1	1	Rnf-Nqr	subunit,	membrane	protein
Abhydrolase_9_N	PF15420.6	gi|410670420|ref|YP_006922791.1|	-	5.5	6.9	12.7	0.2	11.6	1.0	2.3	1	1	1	2	2	2	0	Alpha/beta-hydrolase	family	N-terminus
Rnf-Nqr	PF02508.14	gi|410670421|ref|YP_006922792.1|	-	9.1e-64	214.6	18.9	1e-63	214.4	18.9	1.0	1	0	0	1	1	1	1	Rnf-Nqr	subunit,	membrane	protein
DUF4010	PF13194.6	gi|410670421|ref|YP_006922792.1|	-	0.011	15.5	15.5	0.88	9.2	0.2	3.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4010)
FMN_bind	PF04205.14	gi|410670422|ref|YP_006922793.1|	-	2.7e-16	59.9	0.1	8.9e-16	58.2	0.1	1.8	2	0	0	2	2	2	1	FMN-binding	domain
NQR2_RnfD_RnfE	PF03116.15	gi|410670423|ref|YP_006922794.1|	-	7.3e-67	225.8	23.7	1e-66	225.3	23.7	1.2	1	0	0	1	1	1	1	NQR2,	RnfD,	RnfE	family
RnfC_N	PF13375.6	gi|410670424|ref|YP_006922795.1|	-	1.1e-23	83.1	0.7	3.1e-23	81.6	0.7	1.8	1	0	0	1	1	1	1	RnfC	Barrel	sandwich	hybrid	domain
Complex1_51K	PF01512.17	gi|410670424|ref|YP_006922795.1|	-	5.5e-20	71.8	0.0	1e-19	70.9	0.0	1.5	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase	51	Kd	subunit
Fer4_10	PF13237.6	gi|410670424|ref|YP_006922795.1|	-	2.2e-07	30.9	13.0	1.2e-05	25.3	12.0	2.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|410670424|ref|YP_006922795.1|	-	1.1e-06	28.2	11.3	0.0028	17.4	1.8	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410670424|ref|YP_006922795.1|	-	1.8e-06	28.0	6.8	0.011	15.8	0.9	2.8	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410670424|ref|YP_006922795.1|	-	2e-06	27.9	11.1	9.1e-06	25.8	11.5	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|410670424|ref|YP_006922795.1|	-	3.1e-06	27.5	20.6	1.7e-05	25.2	11.1	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|410670424|ref|YP_006922795.1|	-	6.2e-06	26.7	11.2	6.2e-06	26.7	11.2	2.6	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410670424|ref|YP_006922795.1|	-	7.2e-06	25.8	12.3	0.0087	16.1	1.8	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|410670424|ref|YP_006922795.1|	-	3.4e-05	23.7	13.4	0.016	15.3	0.8	2.9	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|410670424|ref|YP_006922795.1|	-	4.5e-05	23.9	12.1	0.0003	21.3	12.5	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410670424|ref|YP_006922795.1|	-	6.2e-05	23.9	12.3	0.039	14.9	1.8	2.6	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_3	PF12798.7	gi|410670424|ref|YP_006922795.1|	-	0.00028	21.6	16.3	0.059	14.3	6.1	2.9	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|410670424|ref|YP_006922795.1|	-	0.00033	21.5	6.3	0.22	12.4	1.8	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
DUF3813	PF12758.7	gi|410670424|ref|YP_006922795.1|	-	0.00093	19.5	0.0	0.0017	18.6	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3813)
Fer4_18	PF13746.6	gi|410670424|ref|YP_006922795.1|	-	0.0011	19.2	8.7	0.046	13.9	1.1	2.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
NQRA	PF05896.11	gi|410670424|ref|YP_006922795.1|	-	0.0019	17.7	0.2	0.0029	17.1	0.2	1.2	1	0	0	1	1	1	1	Na(+)-translocating	NADH-quinone	reductase	subunit	A	(NQRA)
Fer4_4	PF12800.7	gi|410670424|ref|YP_006922795.1|	-	0.0032	17.9	14.0	0.0038	17.6	1.5	2.7	2	0	0	2	2	2	1	4Fe-4S	binding	domain
SLBB	PF10531.9	gi|410670424|ref|YP_006922795.1|	-	0.019	14.8	0.1	0.054	13.4	0.1	1.9	1	0	0	1	1	1	0	SLBB	domain
SseB_C	PF14581.6	gi|410670424|ref|YP_006922795.1|	-	0.039	14.1	0.0	0.32	11.1	0.0	2.5	1	1	1	2	2	2	0	SseB	protein	C-terminal	domain
Cytochrome_C7	PF14522.6	gi|410670425|ref|YP_006922796.1|	-	0.0003	20.7	26.0	2.7	8.1	1.4	4.9	3	2	1	4	4	4	2	Cytochrome	c7	and	related	cytochrome	c
Cytochrome_C554	PF13435.6	gi|410670425|ref|YP_006922796.1|	-	0.00073	20.4	21.1	0.29	12.1	3.2	5.1	5	0	0	5	5	5	2	Cytochrome	c554	and	c-prime
EF-hand_5	PF13202.6	gi|410670425|ref|YP_006922796.1|	-	0.0063	16.0	0.6	0.025	14.1	0.0	2.1	1	1	1	2	2	2	1	EF	hand
EF-hand_1	PF00036.32	gi|410670425|ref|YP_006922796.1|	-	0.0068	15.9	0.7	0.055	13.0	0.1	2.5	1	1	1	2	2	2	1	EF	hand
Cytochrom_C	PF00034.21	gi|410670425|ref|YP_006922796.1|	-	0.02	16.0	9.5	29	5.9	0.0	5.8	5	1	0	5	5	5	0	Cytochrome	c
Cytochrome_cB	PF11783.8	gi|410670425|ref|YP_006922796.1|	-	0.055	13.4	0.1	0.055	13.4	0.1	4.4	3	2	0	4	4	4	0	Cytochrome	c	bacterial
Dockerin_1	PF00404.18	gi|410670425|ref|YP_006922796.1|	-	0.072	13.3	0.2	0.27	11.5	0.1	2.1	1	1	0	1	1	1	0	Dockerin	type	I	domain
EF-hand_6	PF13405.6	gi|410670425|ref|YP_006922796.1|	-	0.12	12.3	0.2	0.75	9.9	0.0	2.4	1	1	1	2	2	2	0	EF-hand	domain
ApbE	PF02424.15	gi|410670427|ref|YP_006922798.1|	-	2.9e-77	259.7	0.0	3.3e-77	259.5	0.0	1.0	1	0	0	1	1	1	1	ApbE	family
LigT_PEase	PF02834.16	gi|410670428|ref|YP_006922799.1|	-	4.5e-26	90.9	0.1	2e-13	50.3	0.0	2.0	2	0	0	2	2	2	2	LigT	like	Phosphoesterase
AKAP7_NLS	PF10469.9	gi|410670428|ref|YP_006922799.1|	-	2.8e-11	43.7	0.0	3.5e-11	43.4	0.0	1.1	1	0	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
2_5_RNA_ligase2	PF13563.6	gi|410670428|ref|YP_006922799.1|	-	3.6e-11	43.2	0.1	6.6e-11	42.3	0.1	1.4	1	1	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
AAA_25	PF13481.6	gi|410670428|ref|YP_006922799.1|	-	0.15	11.6	0.0	0.25	10.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Prok-TraM	PF09228.10	gi|410670428|ref|YP_006922799.1|	-	0.16	12.4	0.0	0.3	11.5	0.0	1.4	1	0	0	1	1	1	0	Prokaryotic	Transcriptional	repressor	TraM
DisA_N	PF02457.16	gi|410670429|ref|YP_006922800.1|	-	1.1e-21	76.6	1.6	3.8e-21	74.9	0.1	2.3	2	0	0	2	2	2	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
Rota_NSP4	PF01452.16	gi|410670429|ref|YP_006922800.1|	-	0.047	13.4	0.2	0.079	12.6	0.2	1.3	1	0	0	1	1	1	0	Rotavirus	non	structural	protein
Catalase	PF00199.19	gi|410670430|ref|YP_006922801.1|	-	5.4e-198	657.8	0.0	6.4e-198	657.5	0.0	1.0	1	0	0	1	1	1	1	Catalase
Catalase-rel	PF06628.12	gi|410670430|ref|YP_006922801.1|	-	9.6e-21	73.8	0.0	2.3e-20	72.6	0.0	1.7	1	0	0	1	1	1	1	Catalase-related	immune-responsive
Gpr1_Fun34_YaaH	PF01184.19	gi|410670431|ref|YP_006922802.1|	-	6.3e-20	71.7	24.9	1.2e-19	70.7	24.9	1.4	1	1	0	1	1	1	1	GPR1/FUN34/yaaH	family
eRF1_1	PF03463.15	gi|410670433|ref|YP_006922804.1|	-	7.2e-23	81.0	0.5	1.1e-22	80.4	0.5	1.3	1	0	0	1	1	1	1	eRF1	domain	1
eRF1_3	PF03465.15	gi|410670433|ref|YP_006922804.1|	-	4.2e-19	69.1	0.1	1e-18	67.8	0.1	1.7	1	0	0	1	1	1	1	eRF1	domain	3
eRF1_2	PF03464.15	gi|410670433|ref|YP_006922804.1|	-	2.5e-10	40.8	0.0	2.5e-09	37.6	0.0	2.3	1	1	0	1	1	1	1	eRF1	domain	2
FbpA	PF05833.11	gi|410670434|ref|YP_006922805.1|	-	1.7e-91	307.3	0.2	2.3e-91	306.8	0.2	1.1	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
NFACT-R_1	PF05670.13	gi|410670434|ref|YP_006922805.1|	-	7.2e-27	94.2	0.0	1.5e-26	93.2	0.0	1.5	1	0	0	1	1	1	1	NFACT	protein	RNA	binding	domain
NFACT-R_2	PF18297.1	gi|410670434|ref|YP_006922805.1|	-	4.8e-06	26.7	0.0	1.6e-05	25.0	0.0	1.9	1	0	0	1	1	1	1	NFACT	protein	RNA	binding	domain
H2TH	PF06831.14	gi|410670434|ref|YP_006922805.1|	-	0.0063	16.5	0.1	0.026	14.5	0.0	2.0	2	0	0	2	2	2	1	Formamidopyrimidine-DNA	glycosylase	H2TH	domain
Ribosomal_S13	PF00416.22	gi|410670434|ref|YP_006922805.1|	-	0.02	15.3	0.1	0.47	10.8	0.0	2.9	3	0	0	3	3	3	0	Ribosomal	protein	S13/S18
DUF4041	PF13250.6	gi|410670434|ref|YP_006922805.1|	-	0.1	12.5	0.2	0.25	11.3	0.2	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4041)
DNA_primase_S	PF01896.19	gi|410670435|ref|YP_006922806.1|	-	5.4e-22	78.7	0.0	2.1e-21	76.8	0.0	1.9	1	1	0	1	1	1	1	DNA	primase	small	subunit
HHH_5	PF14520.6	gi|410670435|ref|YP_006922806.1|	-	0.00045	20.8	0.1	0.099	13.3	0.0	2.4	1	1	1	2	2	2	2	Helix-hairpin-helix	domain
5_3_exonuc	PF01367.20	gi|410670435|ref|YP_006922806.1|	-	0.075	13.6	0.0	0.17	12.5	0.0	1.6	1	0	0	1	1	1	0	5'-3'	exonuclease,	C-terminal	SAM	fold
UNC45-central	PF11701.8	gi|410670436|ref|YP_006922807.1|	-	0.056	13.4	0.1	0.092	12.7	0.1	1.2	1	0	0	1	1	1	0	Myosin-binding	striated	muscle	assembly	central
DUF5082	PF16888.5	gi|410670436|ref|YP_006922807.1|	-	0.16	12.3	1.7	0.19	12.0	0.5	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5082)
TMPIT	PF07851.13	gi|410670436|ref|YP_006922807.1|	-	0.17	11.1	0.8	0.23	10.7	0.8	1.1	1	0	0	1	1	1	0	TMPIT-like	protein
Ribosomal_L44	PF00935.19	gi|410670437|ref|YP_006922808.1|	-	3.5e-26	91.5	6.7	3.5e-26	91.5	6.7	1.4	1	1	1	2	2	2	1	Ribosomal	protein	L44
zf-LITAF-like	PF10601.9	gi|410670437|ref|YP_006922808.1|	-	0.076	13.3	3.2	0.16	12.3	0.2	2.1	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|410670437|ref|YP_006922808.1|	-	0.23	11.6	4.7	6.4	7.0	0.1	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF1062	PF06353.12	gi|410670437|ref|YP_006922808.1|	-	0.54	11.1	0.3	0.54	11.1	0.3	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1062)
Ribosomal_S27e	PF01667.17	gi|410670438|ref|YP_006922809.1|	-	1.7e-25	88.4	0.9	1.9e-25	88.3	0.9	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S27
zf-C2H2_12	PF18658.1	gi|410670438|ref|YP_006922809.1|	-	0.0017	17.9	0.1	0.0028	17.2	0.0	1.3	1	1	0	1	1	1	1	Zinc-finger	C2H2-type
Zn_Tnp_IS91	PF14319.6	gi|410670438|ref|YP_006922809.1|	-	0.0085	16.1	0.2	0.0085	16.1	0.2	1.1	1	0	0	1	1	1	1	Transposase	zinc-binding	domain
HypA	PF01155.19	gi|410670438|ref|YP_006922809.1|	-	0.017	15.1	0.4	0.019	15.0	0.4	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
FYVE	PF01363.21	gi|410670438|ref|YP_006922809.1|	-	0.018	15.1	0.4	0.021	15.0	0.4	1.2	1	0	0	1	1	1	0	FYVE	zinc	finger
zf-RING_10	PF16685.5	gi|410670438|ref|YP_006922809.1|	-	0.035	14.2	0.4	0.33	11.1	0.0	2.0	2	0	0	2	2	2	0	zinc	RING	finger	of	MSL2
zinc_ribbon_6	PF14599.6	gi|410670438|ref|YP_006922809.1|	-	0.065	13.3	2.2	0.13	12.3	2.0	1.7	2	1	1	3	3	3	0	Zinc-ribbon
zf-BED	PF02892.15	gi|410670438|ref|YP_006922809.1|	-	0.077	13.0	3.0	0.29	11.2	0.1	2.0	1	1	1	2	2	2	0	BED	zinc	finger
Sgf11	PF08209.11	gi|410670438|ref|YP_006922809.1|	-	0.14	11.7	0.1	0.14	11.7	0.1	2.1	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
EIF_2_alpha	PF07541.12	gi|410670439|ref|YP_006922810.1|	-	3.1e-24	85.3	0.5	5.1e-24	84.6	0.5	1.3	1	0	0	1	1	1	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.23	gi|410670439|ref|YP_006922810.1|	-	6.2e-12	45.7	1.0	9.9e-12	45.0	0.3	1.7	2	0	0	2	2	2	1	S1	RNA	binding	domain
DUF952	PF06108.12	gi|410670439|ref|YP_006922810.1|	-	0.064	13.3	0.0	0.12	12.4	0.0	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF952)
Fibrinogen_C	PF00147.18	gi|410670439|ref|YP_006922810.1|	-	0.067	13.0	0.5	0.099	12.4	0.5	1.2	1	0	0	1	1	1	0	Fibrinogen	beta	and	gamma	chains,	C-terminal	globular	domain
3HCDH_N	PF02737.18	gi|410670439|ref|YP_006922810.1|	-	0.14	12.0	3.1	0.13	12.1	1.8	1.5	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
PAC2	PF09754.9	gi|410670440|ref|YP_006922811.1|	-	1.8e-50	171.9	0.0	2.1e-50	171.7	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
PHP_C	PF13263.6	gi|410670441|ref|YP_006922812.1|	-	0.0088	15.8	0.0	0.039	13.7	0.0	2.1	2	0	0	2	2	2	1	PHP-associated
DUF1724	PF08350.10	gi|410670442|ref|YP_006922813.1|	-	1.3e-23	82.9	0.4	2.7e-23	81.9	0.4	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
Spore_YtfJ	PF09579.10	gi|410670443|ref|YP_006922814.1|	-	4.9e-22	77.9	0.3	4.9e-22	77.9	0.3	2.3	2	1	0	2	2	2	1	Sporulation	protein	YtfJ	(Spore_YtfJ)
Apolipoprotein	PF01442.18	gi|410670443|ref|YP_006922814.1|	-	0.013	15.4	2.3	0.019	14.9	2.3	1.2	1	0	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
kleA_kleC	PF17383.2	gi|410670443|ref|YP_006922814.1|	-	0.019	15.3	1.9	0.24	11.7	0.1	2.2	1	1	1	2	2	2	0	Uncharacterized	KorC	regulated	protein	A
ELL	PF10390.9	gi|410670443|ref|YP_006922814.1|	-	0.059	12.8	2.8	0.073	12.6	2.8	1.1	1	0	0	1	1	1	0	RNA	polymerase	II	elongation	factor	ELL
YtxH	PF12732.7	gi|410670443|ref|YP_006922814.1|	-	0.084	13.4	5.2	4.6	7.8	5.0	2.5	1	1	0	1	1	1	0	YtxH-like	protein
CAP18_C	PF12153.8	gi|410670443|ref|YP_006922814.1|	-	0.096	12.6	1.5	1.5	8.7	0.0	2.6	2	0	0	2	2	2	0	LPS	binding	domain	of	CAP18	(C	terminal)
ApoLp-III	PF07464.11	gi|410670443|ref|YP_006922814.1|	-	0.16	12.1	4.5	0.19	11.8	2.6	1.9	2	1	0	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
ISG65-75	PF11727.8	gi|410670443|ref|YP_006922814.1|	-	0.23	10.6	6.1	0.39	9.9	6.1	1.3	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
Hid1	PF12722.7	gi|410670443|ref|YP_006922814.1|	-	1.6	6.8	3.2	2	6.4	3.2	1.0	1	0	0	1	1	1	0	High-temperature-induced	dauer-formation	protein
UPF0242	PF06785.11	gi|410670443|ref|YP_006922814.1|	-	5	7.2	6.2	6.9	6.7	6.2	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
HATPase_c	PF02518.26	gi|410670444|ref|YP_006922815.1|	-	1.1e-30	106.5	1.2	1.9e-30	105.7	0.3	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|410670444|ref|YP_006922815.1|	-	2.6e-28	98.5	0.0	4.6e-15	55.8	0.0	2.2	2	0	0	2	2	2	2	PAS	fold
PAS	PF00989.25	gi|410670444|ref|YP_006922815.1|	-	6e-28	97.1	0.0	9.6e-14	51.4	0.0	2.6	2	0	0	2	2	2	2	PAS	fold
PAS_3	PF08447.12	gi|410670444|ref|YP_006922815.1|	-	5.1e-24	84.4	0.0	7.4e-13	48.6	0.0	2.5	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.7	gi|410670444|ref|YP_006922815.1|	-	6.8e-22	77.7	1.0	3.6e-10	40.0	0.3	2.8	3	0	0	3	3	3	2	PAS	domain
HisKA	PF00512.25	gi|410670444|ref|YP_006922815.1|	-	2e-13	50.2	0.1	7.4e-13	48.3	0.0	2.1	2	0	0	2	2	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.7	gi|410670444|ref|YP_006922815.1|	-	3.6e-10	39.6	0.0	0.00013	21.9	0.0	2.6	2	0	0	2	2	2	2	PAS	domain
PAS_11	PF14598.6	gi|410670444|ref|YP_006922815.1|	-	3.4e-07	30.4	0.0	0.0055	16.8	0.0	2.8	3	0	0	3	3	2	2	PAS	domain
HATPase_c_3	PF13589.6	gi|410670444|ref|YP_006922815.1|	-	0.00033	20.5	0.0	0.00071	19.4	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|410670444|ref|YP_006922815.1|	-	0.0052	16.7	0.0	0.017	15.1	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_10	PF13596.6	gi|410670444|ref|YP_006922815.1|	-	0.006	17.2	0.1	0.036	14.6	0.0	2.3	2	0	0	2	2	2	1	PAS	domain
Rootletin	PF15035.6	gi|410670444|ref|YP_006922815.1|	-	0.011	15.7	5.5	0.011	15.7	5.5	2.0	2	0	0	2	2	2	0	Ciliary	rootlet	component,	centrosome	cohesion
PAS_7	PF12860.7	gi|410670444|ref|YP_006922815.1|	-	0.014	15.6	0.0	0.16	12.2	0.0	2.5	2	0	0	2	2	2	0	PAS	fold
DUF1939	PF09154.10	gi|410670444|ref|YP_006922815.1|	-	0.043	14.0	0.0	0.13	12.5	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1939)
dCache_3	PF14827.6	gi|410670444|ref|YP_006922815.1|	-	0.058	13.0	0.0	0.32	10.6	0.0	2.3	2	1	0	2	2	2	0	Double	sensory	domain	of	two-component	sensor	kinase
Cep57_CLD_2	PF14197.6	gi|410670444|ref|YP_006922815.1|	-	0.068	13.3	2.6	1.6	8.9	0.6	2.7	2	0	0	2	2	2	0	Centrosome	localisation	domain	of	PPC89
Tropomyosin_1	PF12718.7	gi|410670444|ref|YP_006922815.1|	-	0.2	11.8	5.8	0.56	10.4	5.8	1.7	1	0	0	1	1	1	0	Tropomyosin	like
Big_1	PF02369.16	gi|410670444|ref|YP_006922815.1|	-	0.29	11.2	1.8	1.1	9.3	0.1	2.6	3	0	0	3	3	3	0	Bacterial	Ig-like	domain	(group	1)
DUF737	PF05300.11	gi|410670444|ref|YP_006922815.1|	-	1.3	9.3	7.4	0.34	11.2	1.0	2.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF737)
DUF4296	PF14129.6	gi|410670444|ref|YP_006922815.1|	-	1.7	9.3	4.1	7.5	7.2	0.4	3.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4296)
YbjQ_1	PF01906.17	gi|410670445|ref|YP_006922816.1|	-	1.6e-27	96.2	1.3	1.8e-27	96.0	1.3	1.0	1	0	0	1	1	1	1	Putative	heavy-metal-binding
SeleniumBinding	PF11524.8	gi|410670445|ref|YP_006922816.1|	-	0.0043	17.5	0.3	0.0059	17.0	0.2	1.4	1	1	0	1	1	1	1	Selenium	binding	protein
Fe_hyd_lg_C	PF02906.14	gi|410670445|ref|YP_006922816.1|	-	0.12	12.0	0.1	0.15	11.7	0.1	1.1	1	0	0	1	1	1	0	Iron	only	hydrogenase	large	subunit,	C-terminal	domain
BET	PF17035.5	gi|410670446|ref|YP_006922817.1|	-	0.051	13.8	0.3	0.22	11.7	0.1	1.9	2	0	0	2	2	2	0	Bromodomain	extra-terminal	-	transcription	regulation
ABC2_membrane_5	PF13346.6	gi|410670447|ref|YP_006922818.1|	-	0.024	14.2	5.5	0.027	14.0	5.5	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
DUF772	PF05598.11	gi|410670448|ref|YP_006922819.1|	-	2.1e-22	78.9	0.0	3.6e-22	78.1	0.0	1.3	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|410670448|ref|YP_006922819.1|	-	3.6e-12	46.4	0.3	7.1e-12	45.4	0.3	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_4	PF13359.6	gi|410670448|ref|YP_006922819.1|	-	0.00029	20.5	0.1	0.00055	19.6	0.1	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1_3	PF13612.6	gi|410670448|ref|YP_006922819.1|	-	0.00047	20.2	0.1	0.00091	19.3	0.1	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
OrfB_Zn_ribbon	PF07282.11	gi|410670449|ref|YP_006922820.1|	-	3.9e-25	87.6	1.8	1.3e-24	85.9	1.8	2.0	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|410670449|ref|YP_006922820.1|	-	8.9e-11	42.1	0.4	8.9e-11	42.1	0.4	1.9	2	0	0	2	2	2	1	Probable	transposase
Zn_Tnp_IS91	PF14319.6	gi|410670449|ref|YP_006922820.1|	-	0.059	13.4	2.4	0.19	11.7	2.4	1.8	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
A2L_zn_ribbon	PF08792.10	gi|410670449|ref|YP_006922820.1|	-	0.068	12.9	4.0	0.18	11.6	4.0	1.7	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
HypA	PF01155.19	gi|410670449|ref|YP_006922820.1|	-	0.096	12.7	0.4	0.19	11.8	0.4	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
C1_2	PF03107.16	gi|410670449|ref|YP_006922820.1|	-	0.17	12.3	1.7	0.43	10.9	1.7	1.7	1	0	0	1	1	1	0	C1	domain
Tnp_zf-ribbon_2	PF13842.6	gi|410670449|ref|YP_006922820.1|	-	1.8	9.4	5.1	5.8	7.8	5.1	1.9	1	0	0	1	1	1	0	DDE_Tnp_1-like	zinc-ribbon
Zn-ribbon_8	PF09723.10	gi|410670449|ref|YP_006922820.1|	-	5.1	7.3	6.4	7.5	6.8	4.3	2.3	2	1	0	2	2	2	0	Zinc	ribbon	domain
rve_3	PF13683.6	gi|410670452|ref|YP_006922823.1|	-	8.2e-07	28.7	0.0	2.2e-06	27.4	0.0	1.6	2	0	0	2	2	2	1	Integrase	core	domain
DDE_Tnp_IS1	PF03400.13	gi|410670452|ref|YP_006922823.1|	-	3e-06	27.6	0.0	4.8e-06	26.9	0.0	1.4	1	0	0	1	1	1	1	IS1	transposase
MazE_antitoxin	PF04014.18	gi|410670455|ref|YP_006922826.1|	-	0.012	15.5	0.0	0.013	15.5	0.0	1.1	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
HATPase_c	PF02518.26	gi|410670456|ref|YP_006922827.1|	-	2.9e-28	98.6	0.5	7.9e-28	97.2	0.5	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|410670456|ref|YP_006922827.1|	-	1.5e-16	60.2	0.5	9e-16	57.7	0.4	2.3	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
dCache_1	PF02743.18	gi|410670456|ref|YP_006922827.1|	-	7.9e-10	38.9	6.4	1.3e-09	38.2	6.4	1.3	1	0	0	1	1	1	1	Cache	domain
HATPase_c_2	PF13581.6	gi|410670456|ref|YP_006922827.1|	-	0.00089	19.2	0.0	0.002	18.1	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
CHASE	PF03924.13	gi|410670456|ref|YP_006922827.1|	-	0.0054	16.7	0.0	0.011	15.7	0.0	1.5	1	0	0	1	1	1	1	CHASE	domain
HATPase_c_5	PF14501.6	gi|410670456|ref|YP_006922827.1|	-	0.0057	16.5	0.1	0.045	13.7	0.0	2.4	2	0	0	2	2	2	1	GHKL	domain
EMC3_TMCO1	PF01956.16	gi|410670456|ref|YP_006922827.1|	-	0.11	12.3	0.2	0.2	11.4	0.2	1.4	1	0	0	1	1	1	0	Integral	membrane	protein	EMC3/TMCO1-like
Response_reg	PF00072.24	gi|410670457|ref|YP_006922828.1|	-	2e-31	108.4	0.6	3.2e-31	107.8	0.3	1.5	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HTH_24	PF13412.6	gi|410670457|ref|YP_006922828.1|	-	1.1e-05	24.9	0.0	2.4e-05	23.8	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|410670457|ref|YP_006922828.1|	-	3.9e-05	23.4	0.0	7.1e-05	22.5	0.0	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|410670457|ref|YP_006922828.1|	-	0.021	14.8	0.1	0.066	13.2	0.1	1.8	1	0	0	1	1	1	0	HTH	domain
MarR_2	PF12802.7	gi|410670458|ref|YP_006922829.1|	-	0.00017	21.4	0.0	0.00022	21.1	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_9	PF08221.11	gi|410670458|ref|YP_006922829.1|	-	0.0002	21.4	0.1	0.00033	20.7	0.1	1.3	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|410670458|ref|YP_006922829.1|	-	0.00047	19.9	0.0	0.00064	19.5	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|410670458|ref|YP_006922829.1|	-	0.002	17.6	0.0	0.0035	16.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.20	gi|410670458|ref|YP_006922829.1|	-	0.0041	17.4	0.1	0.0057	17.0	0.1	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
MarR	PF01047.22	gi|410670458|ref|YP_006922829.1|	-	0.0052	16.7	0.1	0.0077	16.1	0.1	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|410670458|ref|YP_006922829.1|	-	0.014	15.3	0.0	0.017	15.0	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|410670458|ref|YP_006922829.1|	-	0.014	15.3	0.0	0.02	14.9	0.0	1.2	1	0	0	1	1	1	0	HTH	domain
HTH_36	PF13730.6	gi|410670458|ref|YP_006922829.1|	-	0.027	14.4	0.0	0.043	13.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Cullin	PF00888.22	gi|410670458|ref|YP_006922829.1|	-	0.05	12.2	0.0	0.058	12.0	0.0	1.0	1	0	0	1	1	1	0	Cullin	family
Mga	PF05043.13	gi|410670458|ref|YP_006922829.1|	-	0.059	14.0	0.2	0.17	12.5	0.2	1.8	1	1	0	1	1	1	0	Mga	helix-turn-helix	domain
HTH_46	PF15977.5	gi|410670458|ref|YP_006922829.1|	-	0.06	13.4	0.0	0.096	12.7	0.0	1.5	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA	binding
FUR	PF01475.19	gi|410670458|ref|YP_006922829.1|	-	0.07	13.3	0.1	0.078	13.1	0.1	1.1	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Sensor	PF13796.6	gi|410670459|ref|YP_006922830.1|	-	5.6e-39	133.8	22.7	7.8e-39	133.3	22.7	1.2	1	0	0	1	1	1	1	Putative	sensor
PLDc_N	PF13396.6	gi|410670461|ref|YP_006922832.1|	-	5.3e-14	51.9	1.9	5.3e-14	51.9	1.9	2.0	1	1	1	2	2	2	1	Phospholipase_D-nuclease	N-terminal
YbjM	PF11045.8	gi|410670461|ref|YP_006922832.1|	-	0.024	14.8	1.5	0.034	14.3	1.3	1.3	1	1	0	1	1	1	0	Putative	inner	membrane	protein	of	Enterobacteriaceae
DUF1496	PF07383.12	gi|410670461|ref|YP_006922832.1|	-	0.12	12.0	0.1	0.18	11.4	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1496)
LapA_dom	PF06305.11	gi|410670461|ref|YP_006922832.1|	-	0.16	11.8	3.4	5.1	7.0	0.0	2.1	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
HemY_N	PF07219.13	gi|410670461|ref|YP_006922832.1|	-	0.4	10.9	1.8	11	6.3	0.3	2.0	2	0	0	2	2	2	0	HemY	protein	N-terminus
MacB_PCD	PF12704.7	gi|410670462|ref|YP_006922833.1|	-	2.6e-26	93.2	3.6	2.6e-26	93.2	3.6	2.0	3	0	0	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|410670462|ref|YP_006922833.1|	-	3.2e-14	53.2	3.7	3.2e-14	53.2	3.7	3.1	3	0	0	3	3	3	2	FtsX-like	permease	family
DUF4064	PF13273.6	gi|410670462|ref|YP_006922833.1|	-	0.74	10.1	21.4	1.6	9.1	10.2	3.8	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF4064)
CARDB	PF07705.11	gi|410670463|ref|YP_006922834.1|	-	0.00021	21.5	5.5	0.52	10.6	0.0	3.5	3	0	0	3	3	3	3	CARDB
Gram_pos_anchor	PF00746.21	gi|410670463|ref|YP_006922834.1|	-	0.022	14.7	0.3	0.046	13.7	0.3	1.5	1	0	0	1	1	1	0	LPXTG	cell	wall	anchor	motif
Asp4	PF16996.5	gi|410670463|ref|YP_006922834.1|	-	0.037	13.8	6.2	0.076	12.8	0.8	2.6	3	0	0	3	3	3	0	Accessory	secretory	protein	Sec	Asp4
DUF11	PF01345.18	gi|410670463|ref|YP_006922834.1|	-	0.094	13.0	2.2	0.69	10.3	0.3	3.0	3	1	0	3	3	3	0	Domain	of	unknown	function	DUF11
dTDP_sugar_isom	PF00908.17	gi|410670463|ref|YP_006922834.1|	-	0.16	11.6	0.0	0.3	10.7	0.0	1.4	1	0	0	1	1	1	0	dTDP-4-dehydrorhamnose	3,5-epimerase
ABC_tran	PF00005.27	gi|410670464|ref|YP_006922835.1|	-	3.3e-33	115.1	0.0	4.5e-33	114.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|410670464|ref|YP_006922835.1|	-	6.9e-09	35.9	0.5	2.8e-05	24.1	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|410670464|ref|YP_006922835.1|	-	6.5e-07	29.0	0.0	0.013	15.0	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|410670464|ref|YP_006922835.1|	-	0.00017	21.2	0.1	0.00035	20.2	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|410670464|ref|YP_006922835.1|	-	0.0009	19.2	0.1	0.0017	18.2	0.1	1.5	1	0	0	1	1	1	1	RsgA	GTPase
G-alpha	PF00503.20	gi|410670464|ref|YP_006922835.1|	-	0.0013	17.9	0.0	0.0018	17.5	0.0	1.1	1	0	0	1	1	1	1	G-protein	alpha	subunit
AAA_22	PF13401.6	gi|410670464|ref|YP_006922835.1|	-	0.0023	18.2	0.1	0.017	15.4	0.1	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.6	gi|410670464|ref|YP_006922835.1|	-	0.011	16.3	0.1	0.019	15.4	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|410670464|ref|YP_006922835.1|	-	0.011	15.4	0.0	0.091	12.3	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|410670464|ref|YP_006922835.1|	-	0.015	15.7	0.1	0.017	15.5	0.1	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|410670464|ref|YP_006922835.1|	-	0.017	14.9	0.0	0.036	13.8	0.0	1.5	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|410670464|ref|YP_006922835.1|	-	0.023	14.8	0.1	0.053	13.6	0.1	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
IstB_IS21	PF01695.17	gi|410670464|ref|YP_006922835.1|	-	0.025	14.3	0.0	0.22	11.2	0.0	2.0	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_24	PF13479.6	gi|410670464|ref|YP_006922835.1|	-	0.032	13.9	0.0	0.075	12.8	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|410670464|ref|YP_006922835.1|	-	0.038	14.2	0.0	0.073	13.2	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|410670464|ref|YP_006922835.1|	-	0.081	12.4	0.1	0.13	11.8	0.1	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
NB-ARC	PF00931.22	gi|410670464|ref|YP_006922835.1|	-	0.1	11.8	0.1	0.2	10.8	0.1	1.4	1	0	0	1	1	1	0	NB-ARC	domain
NACHT	PF05729.12	gi|410670464|ref|YP_006922835.1|	-	0.1	12.5	0.1	0.54	10.2	0.1	2.0	2	0	0	2	2	2	0	NACHT	domain
MacB_PCD	PF12704.7	gi|410670465|ref|YP_006922836.1|	-	8.5e-26	91.5	6.7	8.5e-26	91.5	6.7	2.2	2	0	0	2	2	2	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|410670465|ref|YP_006922836.1|	-	1.3e-10	41.6	5.5	1.3e-10	41.6	5.5	3.3	3	0	0	3	3	3	2	FtsX-like	permease	family
MacB_PCD	PF12704.7	gi|410670466|ref|YP_006922837.1|	-	2.2e-24	86.9	6.2	2.2e-24	86.9	6.2	2.4	3	0	0	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|410670466|ref|YP_006922837.1|	-	2.1e-15	57.0	3.1	2.1e-15	57.0	3.1	3.0	3	0	0	3	3	3	1	FtsX-like	permease	family
DUF1418	PF07214.12	gi|410670466|ref|YP_006922837.1|	-	0.00058	19.7	1.9	0.00058	19.7	1.9	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1418)
DUF2613	PF11021.8	gi|410670466|ref|YP_006922837.1|	-	8.8	6.5	17.0	6.5	7.0	1.8	3.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2613)
CARDB	PF07705.11	gi|410670467|ref|YP_006922838.1|	-	0.00072	19.8	0.3	1.1	9.6	0.0	3.3	2	1	2	4	4	4	2	CARDB
DUF11	PF01345.18	gi|410670467|ref|YP_006922838.1|	-	0.0034	17.6	0.0	0.18	12.2	0.0	3.0	2	1	0	2	2	2	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|410670467|ref|YP_006922838.1|	-	0.03	14.6	0.1	2.8	8.3	0.0	3.4	4	0	0	4	4	4	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF5325	PF17259.2	gi|410670467|ref|YP_006922838.1|	-	0.048	13.6	0.2	0.1	12.5	0.2	1.5	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5325)
ABC_tran	PF00005.27	gi|410670468|ref|YP_006922839.1|	-	1.4e-32	113.0	0.0	1.9e-32	112.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|410670468|ref|YP_006922839.1|	-	3.8e-09	36.8	0.0	1.8e-05	24.7	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|410670468|ref|YP_006922839.1|	-	2.8e-07	30.2	0.1	8.5e-06	25.4	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|410670468|ref|YP_006922839.1|	-	0.00019	21.1	0.2	0.00039	20.1	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|410670468|ref|YP_006922839.1|	-	0.00038	20.4	0.0	0.00076	19.4	0.0	1.5	1	0	0	1	1	1	1	RsgA	GTPase
AAA_23	PF13476.6	gi|410670468|ref|YP_006922839.1|	-	0.0055	17.2	0.1	0.013	16.0	0.1	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|410670468|ref|YP_006922839.1|	-	0.0068	16.7	0.1	0.02	15.2	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|410670468|ref|YP_006922839.1|	-	0.0094	16.4	0.0	0.011	16.1	0.0	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|410670468|ref|YP_006922839.1|	-	0.027	14.6	0.0	0.059	13.4	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
IstB_IS21	PF01695.17	gi|410670468|ref|YP_006922839.1|	-	0.037	13.8	0.0	0.32	10.7	0.0	2.0	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
T2SSE	PF00437.20	gi|410670468|ref|YP_006922839.1|	-	0.047	12.7	0.0	0.072	12.1	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_24	PF13479.6	gi|410670468|ref|YP_006922839.1|	-	0.054	13.2	0.0	0.095	12.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|410670468|ref|YP_006922839.1|	-	0.089	12.5	0.0	0.18	11.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|410670468|ref|YP_006922839.1|	-	0.099	11.8	0.2	0.17	11.0	0.2	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_25	PF13481.6	gi|410670468|ref|YP_006922839.1|	-	0.1	12.2	0.0	0.18	11.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|410670468|ref|YP_006922839.1|	-	0.13	12.5	0.1	0.27	11.4	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|410670468|ref|YP_006922839.1|	-	0.19	11.6	0.0	0.41	10.5	0.0	1.5	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
Yip1	PF04893.17	gi|410670469|ref|YP_006922840.1|	-	4.3e-36	124.2	16.4	5e-36	124.0	16.4	1.0	1	0	0	1	1	1	1	Yip1	domain
DUF1282	PF06930.12	gi|410670469|ref|YP_006922840.1|	-	2.7e-06	27.3	13.0	3.7e-06	26.8	13.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1282)
Sars6	PF12133.8	gi|410670469|ref|YP_006922840.1|	-	0.12	12.3	1.4	2.1	8.4	0.0	2.5	2	0	0	2	2	2	0	Open	reading	frame	6	from	SARS	coronavirus
CARDB	PF07705.11	gi|410670470|ref|YP_006922841.1|	-	0.0016	18.6	1.3	5.3	7.4	0.0	3.3	3	0	0	3	3	3	2	CARDB
DUF11	PF01345.18	gi|410670470|ref|YP_006922841.1|	-	0.0027	18.0	3.3	0.027	14.7	0.3	3.2	3	0	0	3	3	3	1	Domain	of	unknown	function	DUF11
ABC_tran	PF00005.27	gi|410670471|ref|YP_006922842.1|	-	1.1e-34	119.9	0.0	1.5e-34	119.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|410670471|ref|YP_006922842.1|	-	1.9e-08	34.1	0.2	5e-07	29.4	0.2	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|410670471|ref|YP_006922842.1|	-	1.6e-07	31.5	0.7	0.00028	20.8	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|410670471|ref|YP_006922842.1|	-	1.5e-05	24.9	0.2	3.6e-05	23.7	0.1	1.7	2	0	0	2	2	2	1	RsgA	GTPase
AAA_29	PF13555.6	gi|410670471|ref|YP_006922842.1|	-	0.0001	21.9	0.2	0.00021	20.9	0.2	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|410670471|ref|YP_006922842.1|	-	0.002	18.4	0.3	0.029	14.6	0.3	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|410670471|ref|YP_006922842.1|	-	0.0071	16.1	0.1	0.096	12.4	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|410670471|ref|YP_006922842.1|	-	0.014	15.8	0.2	0.032	14.6	0.2	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
cobW	PF02492.19	gi|410670471|ref|YP_006922842.1|	-	0.048	13.3	0.2	0.059	13.0	0.2	1.4	1	1	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
MMR_HSR1	PF01926.23	gi|410670471|ref|YP_006922842.1|	-	0.051	13.7	1.2	0.15	12.1	1.2	2.1	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_25	PF13481.6	gi|410670471|ref|YP_006922842.1|	-	0.052	13.1	0.1	0.35	10.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|410670471|ref|YP_006922842.1|	-	0.06	13.5	0.1	0.18	11.9	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
MeaB	PF03308.16	gi|410670471|ref|YP_006922842.1|	-	0.065	12.2	0.1	0.23	10.4	0.0	1.8	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
FtsK_SpoIIIE	PF01580.18	gi|410670471|ref|YP_006922842.1|	-	0.081	12.3	0.2	0.13	11.6	0.2	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
G-alpha	PF00503.20	gi|410670471|ref|YP_006922842.1|	-	0.082	12.0	0.0	0.087	12.0	0.0	1.2	1	0	0	1	1	1	0	G-protein	alpha	subunit
ATPase	PF06745.13	gi|410670471|ref|YP_006922842.1|	-	0.087	12.2	0.2	5.8	6.2	0.1	2.1	2	0	0	2	2	2	0	KaiC
AAA_15	PF13175.6	gi|410670471|ref|YP_006922842.1|	-	0.13	12.0	0.2	1	9.0	0.2	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
NB-ARC	PF00931.22	gi|410670471|ref|YP_006922842.1|	-	0.16	11.1	0.1	0.25	10.5	0.1	1.2	1	0	0	1	1	1	0	NB-ARC	domain
IstB_IS21	PF01695.17	gi|410670471|ref|YP_006922842.1|	-	0.18	11.5	0.0	1.3	8.7	0.0	2.1	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
MacB_PCD	PF12704.7	gi|410670472|ref|YP_006922843.1|	-	4.3e-27	95.7	0.9	7.2e-27	95.0	0.9	1.4	1	0	0	1	1	1	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|410670472|ref|YP_006922843.1|	-	1.7e-12	47.6	5.8	1.7e-12	47.6	5.8	3.0	3	0	0	3	3	3	1	FtsX-like	permease	family
Snf7	PF03357.21	gi|410670472|ref|YP_006922843.1|	-	0.11	12.1	0.8	0.2	11.2	0.8	1.3	1	0	0	1	1	1	0	Snf7
CompInhib_SCIN	PF11546.8	gi|410670472|ref|YP_006922843.1|	-	0.11	12.5	0.0	0.32	11.0	0.0	1.7	1	0	0	1	1	1	0	Staphylococcal	complement	inhibitor	SCIN
PGM1_C	PF18105.1	gi|410670472|ref|YP_006922843.1|	-	0.18	11.3	0.0	0.45	10.1	0.0	1.6	1	0	0	1	1	1	0	PGM1	C-terminal	domain
LptF_LptG	PF03739.14	gi|410670472|ref|YP_006922843.1|	-	0.46	9.3	9.6	0.051	12.4	5.3	1.6	2	0	0	2	2	2	0	Lipopolysaccharide	export	system	permease	LptF/LptG
TcfC	PF16967.5	gi|410670473|ref|YP_006922844.1|	-	9.8e-07	28.2	0.0	0.0011	18.4	0.0	3.7	3	0	0	3	3	3	1	E-set	like	domain
CopC	PF04234.12	gi|410670473|ref|YP_006922844.1|	-	0.00075	20.5	0.0	3	9.0	0.0	2.8	2	1	0	2	2	2	2	CopC	domain
BsuPI	PF12690.7	gi|410670473|ref|YP_006922844.1|	-	0.0023	17.9	0.0	1.2	9.2	0.0	2.5	2	0	0	2	2	2	2	Intracellular	proteinase	inhibitor
P53_C	PF11619.8	gi|410670473|ref|YP_006922844.1|	-	0.0067	16.5	0.2	0.12	12.4	0.0	2.8	4	0	0	4	4	4	1	Transcription	factor	P53	-	C	terminal	domain
Big_3_5	PF16640.5	gi|410670473|ref|YP_006922844.1|	-	0.023	14.9	0.0	0.067	13.4	0.0	1.8	1	0	0	1	1	1	0	Bacterial	Ig-like	domain	(group	3)
Wzt_C	PF14524.6	gi|410670473|ref|YP_006922844.1|	-	0.025	14.6	0.0	2.1	8.4	0.0	2.4	2	0	0	2	2	2	0	Wzt	C-terminal	domain
DUF3324	PF11797.8	gi|410670473|ref|YP_006922844.1|	-	0.072	13.1	0.0	10	6.1	0.0	2.7	2	1	1	3	3	3	0	Protein	of	unknown	function	C-terminal	(DUF3324)
MacB_PCD	PF12704.7	gi|410670474|ref|YP_006922845.1|	-	6.8e-15	55.9	1.9	6.8e-15	55.9	1.9	1.9	2	0	0	2	2	2	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|410670474|ref|YP_006922845.1|	-	1.4e-11	44.7	5.5	1.4e-11	44.7	5.5	2.7	3	0	0	3	3	3	1	FtsX-like	permease	family
Pyrophosphatase	PF00719.19	gi|410670475|ref|YP_006922846.1|	-	5e-08	32.9	0.1	6.7e-08	32.5	0.1	1.1	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
MacB_PCD	PF12704.7	gi|410670476|ref|YP_006922847.1|	-	3.6e-17	63.4	3.5	4.9e-17	62.9	3.5	1.2	1	0	0	1	1	1	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|410670476|ref|YP_006922847.1|	-	6.4e-16	58.6	1.5	6.4e-16	58.6	1.5	3.0	3	0	0	3	3	3	2	FtsX-like	permease	family
LysE	PF01810.18	gi|410670477|ref|YP_006922848.1|	-	1.4e-29	102.9	11.0	1.7e-29	102.7	11.0	1.0	1	0	0	1	1	1	1	LysE	type	translocator
TerC	PF03741.16	gi|410670477|ref|YP_006922848.1|	-	0.71	9.5	7.0	1.6	8.4	7.0	1.9	1	1	0	1	1	1	0	Integral	membrane	protein	TerC	family
Lar_N	PF09861.9	gi|410670478|ref|YP_006922849.1|	-	1.7e-58	197.2	0.0	2.9e-58	196.4	0.0	1.3	1	0	0	1	1	1	1	Lactate	racemase	N-terminal	domain
DUF362	PF04015.12	gi|410670478|ref|YP_006922849.1|	-	0.0066	16.7	0.0	0.01	16.1	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF362)
Mur_ligase_C	PF02875.21	gi|410670478|ref|YP_006922849.1|	-	0.01	16.1	0.1	0.032	14.5	0.1	1.8	1	0	0	1	1	1	0	Mur	ligase	family,	glutamate	ligase	domain
Enolase_C	PF00113.22	gi|410670479|ref|YP_006922850.1|	-	2.5e-115	384.8	0.4	3.4e-115	384.3	0.4	1.1	1	0	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.16	gi|410670479|ref|YP_006922850.1|	-	7.5e-59	197.6	0.1	1.5e-58	196.6	0.1	1.5	1	0	0	1	1	1	1	Enolase,	N-terminal	domain
MR_MLE_C	PF13378.6	gi|410670479|ref|YP_006922850.1|	-	1.8e-06	27.7	0.0	2.5e-06	27.2	0.0	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
TrmB	PF01978.19	gi|410670480|ref|YP_006922851.1|	-	0.00052	19.8	0.1	0.0012	18.7	0.0	1.6	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
SMC_ScpB	PF04079.16	gi|410670480|ref|YP_006922851.1|	-	0.0018	18.0	0.1	0.0033	17.1	0.0	1.5	1	1	0	1	1	1	1	Segregation	and	condensation	complex	subunit	ScpB
MarR_2	PF12802.7	gi|410670480|ref|YP_006922851.1|	-	0.0022	17.9	0.0	0.0039	17.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Hormone_recep	PF00104.30	gi|410670480|ref|YP_006922851.1|	-	0.045	13.3	0.0	0.068	12.7	0.0	1.2	1	0	0	1	1	1	0	Ligand-binding	domain	of	nuclear	hormone	receptor
TFIIE_alpha	PF02002.17	gi|410670480|ref|YP_006922851.1|	-	0.075	12.9	0.0	0.085	12.7	0.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
DUF296	PF03479.15	gi|410670481|ref|YP_006922852.1|	-	5.7e-14	52.4	0.0	6.4e-14	52.2	0.0	1.0	1	0	0	1	1	1	1	Plants	and	Prokaryotes	Conserved	(PCC)	domain
ABC_tran	PF00005.27	gi|410670482|ref|YP_006922853.1|	-	5.1e-32	111.2	0.0	7.6e-32	110.7	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|410670482|ref|YP_006922853.1|	-	4.2e-08	32.9	0.2	5.5e-06	26.0	0.2	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|410670482|ref|YP_006922853.1|	-	4e-05	23.3	0.2	8.3e-05	22.3	0.2	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_21	PF13304.6	gi|410670482|ref|YP_006922853.1|	-	0.00012	22.0	0.5	0.043	13.6	0.3	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|410670482|ref|YP_006922853.1|	-	0.00043	20.6	0.2	0.0079	16.5	0.2	2.1	1	1	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.15	gi|410670482|ref|YP_006922853.1|	-	0.00095	19.1	0.1	0.84	9.5	0.0	2.2	2	0	0	2	2	2	2	NTPase
AAA_16	PF13191.6	gi|410670482|ref|YP_006922853.1|	-	0.0014	19.1	0.0	0.0021	18.4	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_15	PF13175.6	gi|410670482|ref|YP_006922853.1|	-	0.0014	18.4	0.0	0.013	15.2	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|410670482|ref|YP_006922853.1|	-	0.0025	17.4	0.0	0.37	10.3	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.6	gi|410670482|ref|YP_006922853.1|	-	0.032	14.8	0.1	0.053	14.0	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|410670482|ref|YP_006922853.1|	-	0.037	13.9	0.1	0.069	13.0	0.1	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_28	PF13521.6	gi|410670482|ref|YP_006922853.1|	-	0.04	14.2	0.0	0.19	12.0	0.0	1.9	2	1	1	3	3	3	0	AAA	domain
G-alpha	PF00503.20	gi|410670482|ref|YP_006922853.1|	-	0.042	13.0	0.0	0.042	13.0	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
AAA_13	PF13166.6	gi|410670482|ref|YP_006922853.1|	-	0.13	10.9	0.0	0.93	8.0	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|410670482|ref|YP_006922853.1|	-	0.17	12.1	0.0	0.36	11.0	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
Tubulin	PF00091.25	gi|410670483|ref|YP_006922854.1|	-	8e-31	107.8	0.4	1.3e-30	107.1	0.4	1.3	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.6	gi|410670483|ref|YP_006922854.1|	-	0.00019	20.8	0.0	0.0011	18.3	0.0	2.0	1	1	1	2	2	2	1	Tubulin	like
DUF11	PF01345.18	gi|410670484|ref|YP_006922855.1|	-	9.1e-09	35.5	6.7	3e-06	27.4	1.6	3.5	1	1	1	2	2	2	2	Domain	of	unknown	function	DUF11
CARDB	PF07705.11	gi|410670484|ref|YP_006922855.1|	-	5.5e-07	29.8	1.7	0.014	15.6	0.1	2.9	2	0	0	2	2	2	2	CARDB
bMG10	PF17973.1	gi|410670484|ref|YP_006922855.1|	-	0.00057	20.1	1.2	0.56	10.4	0.1	3.1	2	1	1	3	3	3	2	Bacterial	Alpha-2-macroglobulin	MG10	domain
TRAP_beta	PF05753.14	gi|410670484|ref|YP_006922855.1|	-	0.00083	18.8	4.1	0.23	10.8	0.4	2.9	1	1	2	3	3	3	2	Translocon-associated	protein	beta	(TRAPB)
BatD	PF13584.6	gi|410670484|ref|YP_006922855.1|	-	0.013	14.3	6.1	0.015	14.1	2.1	2.4	1	1	2	3	3	3	0	Oxygen	tolerance
LapA_dom	PF06305.11	gi|410670484|ref|YP_006922855.1|	-	0.17	11.7	0.0	0.44	10.4	0.0	1.6	1	0	0	1	1	1	0	Lipopolysaccharide	assembly	protein	A	domain
QRPTase_C	PF01729.19	gi|410670485|ref|YP_006922856.1|	-	7.9e-59	198.2	1.2	1.1e-58	197.8	1.2	1.2	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.16	gi|410670485|ref|YP_006922856.1|	-	1.3e-20	73.3	0.0	2.6e-20	72.2	0.0	1.6	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Ribul_P_3_epim	PF00834.19	gi|410670485|ref|YP_006922856.1|	-	0.00084	18.8	0.8	0.01	15.2	0.2	2.2	1	1	1	2	2	2	1	Ribulose-phosphate	3	epimerase	family
KDGP_aldolase	PF07071.11	gi|410670485|ref|YP_006922856.1|	-	0.0081	16.0	0.2	0.019	14.8	0.2	1.5	1	1	0	1	1	1	1	KDGP	aldolase
IGPS	PF00218.21	gi|410670485|ref|YP_006922856.1|	-	0.027	13.6	0.1	0.039	13.1	0.1	1.2	1	0	0	1	1	1	0	Indole-3-glycerol	phosphate	synthase
TMP-TENI	PF02581.17	gi|410670485|ref|YP_006922856.1|	-	0.065	12.6	2.5	0.21	10.9	2.5	1.8	1	1	0	1	1	1	0	Thiamine	monophosphate	synthase
DUF108	PF01958.18	gi|410670486|ref|YP_006922857.1|	-	2.7e-36	123.8	1.6	4.4e-36	123.1	1.6	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF108
NAD_binding_3	PF03447.16	gi|410670486|ref|YP_006922857.1|	-	1.2e-24	87.2	0.1	1.9e-24	86.6	0.1	1.3	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.20	gi|410670486|ref|YP_006922857.1|	-	7.9e-08	32.5	0.0	1.4e-07	31.6	0.0	1.4	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
F420_oxidored	PF03807.17	gi|410670486|ref|YP_006922857.1|	-	2.1e-05	25.0	0.1	6e-05	23.6	0.1	1.8	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
GFO_IDH_MocA	PF01408.22	gi|410670486|ref|YP_006922857.1|	-	2.9e-05	24.9	0.0	5.7e-05	23.9	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Shikimate_DH	PF01488.20	gi|410670486|ref|YP_006922857.1|	-	0.00046	20.3	0.0	0.0012	18.9	0.0	1.7	1	1	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_2	PF03446.15	gi|410670486|ref|YP_006922857.1|	-	0.001	19.2	0.0	0.0017	18.6	0.0	1.3	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|410670486|ref|YP_006922857.1|	-	0.023	15.0	0.6	0.056	13.7	0.6	1.6	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
2-Hacid_dh_C	PF02826.19	gi|410670486|ref|YP_006922857.1|	-	0.031	13.6	0.0	0.045	13.1	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Gp_dh_N	PF00044.24	gi|410670486|ref|YP_006922857.1|	-	0.044	14.1	0.1	0.14	12.5	0.1	1.9	1	1	0	1	1	1	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|410670486|ref|YP_006922857.1|	-	0.053	13.4	0.1	0.18	11.6	0.0	1.9	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NadA	PF02445.16	gi|410670487|ref|YP_006922858.1|	-	5.9e-118	393.4	4.6	6.7e-118	393.2	4.6	1.0	1	0	0	1	1	1	1	Quinolinate	synthetase	A	protein
DUF2498	PF10692.9	gi|410670487|ref|YP_006922858.1|	-	0.021	14.7	0.2	0.062	13.2	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2498)
Amidohydro_1	PF01979.20	gi|410670487|ref|YP_006922858.1|	-	0.73	9.1	3.4	1.6	8.0	0.2	2.3	1	1	1	2	2	2	0	Amidohydrolase	family
UbiA	PF01040.18	gi|410670488|ref|YP_006922859.1|	-	3.2e-42	144.6	16.8	4.6e-42	144.1	16.7	1.3	1	1	0	1	1	1	1	UbiA	prenyltransferase	family
MCR_beta	PF02241.18	gi|410670488|ref|YP_006922859.1|	-	0.018	14.6	0.1	0.027	14.1	0.1	1.2	1	0	0	1	1	1	0	Methyl-coenzyme	M	reductase	beta	subunit,	C-terminal	domain
S_layer_N	PF05123.12	gi|410670488|ref|YP_006922859.1|	-	0.2	11.5	0.1	0.3	10.9	0.1	1.2	1	0	0	1	1	1	0	S-layer	like	family,	N-terminal	region
AdoMet_Synthase	PF01941.19	gi|410670489|ref|YP_006922860.1|	-	1.3e-156	521.4	0.1	1.4e-156	521.2	0.1	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
S-AdoMet_synt_N	PF00438.20	gi|410670489|ref|YP_006922860.1|	-	0.012	16.3	0.5	0.061	14.0	0.0	2.3	2	1	0	2	2	2	0	S-adenosylmethionine	synthetase,	N-terminal	domain
PIN_5	PF08745.11	gi|410670490|ref|YP_006922861.1|	-	3.4e-91	304.3	0.0	3.9e-91	304.1	0.0	1.0	1	0	0	1	1	1	1	PINc	domain	ribonuclease
Collectrin	PF16959.5	gi|410670490|ref|YP_006922861.1|	-	0.013	15.2	0.0	0.021	14.6	0.0	1.3	1	0	0	1	1	1	0	Renal	amino	acid	transporter
ORC4_C	PF14629.6	gi|410670490|ref|YP_006922861.1|	-	0.12	11.7	0.0	12	5.2	0.0	2.5	2	1	1	3	3	3	0	Origin	recognition	complex	(ORC)	subunit	4	C-terminus
Response_reg	PF00072.24	gi|410670491|ref|YP_006922862.1|	-	1.6e-27	95.9	0.5	1.8e-27	95.7	0.5	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DeoRC	PF00455.22	gi|410670491|ref|YP_006922862.1|	-	0.068	13.1	0.1	9.9	6.1	0.0	2.1	1	1	1	2	2	2	0	DeoR	C	terminal	sensor	domain
CHASE4	PF05228.13	gi|410670492|ref|YP_006922863.1|	-	3.9e-31	108.1	0.1	5.3e-31	107.7	0.1	1.2	1	0	0	1	1	1	1	CHASE4	domain
HATPase_c	PF02518.26	gi|410670493|ref|YP_006922864.1|	-	1.2e-31	109.5	0.1	2.4e-31	108.5	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.24	gi|410670493|ref|YP_006922864.1|	-	4.4e-22	78.4	0.1	1.2e-21	77.0	0.1	1.8	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HisKA	PF00512.25	gi|410670493|ref|YP_006922864.1|	-	4.8e-18	65.0	0.4	1.2e-17	63.7	0.0	1.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.7	gi|410670493|ref|YP_006922864.1|	-	3.3e-08	33.7	0.0	8.5e-08	32.4	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
PAS_8	PF13188.7	gi|410670493|ref|YP_006922864.1|	-	1.6e-06	28.0	0.0	3.8e-06	26.8	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|410670493|ref|YP_006922864.1|	-	3.6e-05	23.7	0.0	0.00011	22.2	0.0	1.9	2	0	0	2	2	2	1	PAS	fold
HATPase_c_3	PF13589.6	gi|410670493|ref|YP_006922864.1|	-	0.0029	17.4	0.0	0.0085	15.9	0.0	1.9	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.6	gi|410670493|ref|YP_006922864.1|	-	0.018	14.9	0.1	0.11	12.4	0.0	2.5	1	1	1	2	2	2	0	GHKL	domain
PAS_4	PF08448.10	gi|410670493|ref|YP_006922864.1|	-	0.027	14.7	0.0	0.048	13.9	0.0	1.5	1	0	0	1	1	1	0	PAS	fold
SPACA9	PF15120.6	gi|410670493|ref|YP_006922864.1|	-	0.042	13.6	0.1	0.099	12.4	0.1	1.6	1	0	0	1	1	1	0	Sperm	acrosome-associated	protein	9
AHSA1	PF08327.11	gi|410670494|ref|YP_006922865.1|	-	1.4e-23	83.4	0.0	1.6e-23	83.3	0.0	1.0	1	0	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
CENP-B_N	PF04218.13	gi|410670495|ref|YP_006922866.1|	-	0.011	15.3	0.0	0.014	15.0	0.0	1.1	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
Fer4	PF00037.27	gi|410670496|ref|YP_006922867.1|	-	5.5e-19	67.1	19.5	1.6e-10	40.3	4.6	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|410670496|ref|YP_006922867.1|	-	2.4e-15	55.9	19.2	8.1e-08	32.0	6.7	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|410670496|ref|YP_006922867.1|	-	2e-12	47.5	12.4	2.9e-12	47.0	12.4	1.3	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410670496|ref|YP_006922867.1|	-	3e-12	45.8	17.0	1.6e-06	27.9	3.4	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410670496|ref|YP_006922867.1|	-	8.4e-12	45.0	13.0	1.1e-11	44.7	13.0	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410670496|ref|YP_006922867.1|	-	3.6e-11	43.0	14.6	3e-06	27.2	2.1	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410670496|ref|YP_006922867.1|	-	4.4e-11	43.5	9.3	8.4e-06	26.6	0.7	2.1	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|410670496|ref|YP_006922867.1|	-	5.4e-11	42.5	10.0	7.3e-11	42.1	10.0	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410670496|ref|YP_006922867.1|	-	9.5e-11	41.3	13.5	4.3e-06	26.8	1.8	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|410670496|ref|YP_006922867.1|	-	1e-06	29.2	18.6	0.00053	20.7	6.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|410670496|ref|YP_006922867.1|	-	7.6e-06	26.7	6.5	0.011	16.6	1.0	2.0	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|410670496|ref|YP_006922867.1|	-	1e-05	25.8	13.0	0.0031	17.9	2.5	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410670496|ref|YP_006922867.1|	-	1.7e-05	25.3	11.6	0.0037	17.8	1.6	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|410670496|ref|YP_006922867.1|	-	3.9e-05	24.1	22.6	0.034	14.7	6.1	3.1	2	2	1	3	3	3	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|410670496|ref|YP_006922867.1|	-	6.6e-05	23.6	21.9	0.00078	20.1	6.0	3.5	1	1	2	3	3	3	2	4Fe-4S	single	cluster	domain
Fer4_11	PF13247.6	gi|410670496|ref|YP_006922867.1|	-	0.0026	17.9	5.7	0.0029	17.7	5.7	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|410670496|ref|YP_006922867.1|	-	0.083	13.1	15.3	0.84	9.8	15.3	1.9	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
RLI	PF04068.15	gi|410670496|ref|YP_006922867.1|	-	0.12	12.3	4.4	8.6	6.3	0.3	3.6	3	1	0	3	3	3	0	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
MCPsignal	PF00015.21	gi|410670497|ref|YP_006922868.1|	-	2.9e-46	157.4	21.0	2.9e-46	157.4	21.0	7.8	3	2	4	8	8	8	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
dCache_1	PF02743.18	gi|410670497|ref|YP_006922868.1|	-	3.5e-22	79.4	2.0	3.5e-22	79.4	2.0	3.2	2	0	0	2	2	2	1	Cache	domain
HAMP	PF00672.25	gi|410670497|ref|YP_006922868.1|	-	2.2e-15	56.8	4.9	0.00018	21.8	0.0	10.9	8	3	2	10	10	10	2	HAMP	domain
DUF948	PF06103.11	gi|410670497|ref|YP_006922868.1|	-	0.00095	19.4	45.7	0.45	10.8	3.5	10.9	4	3	4	9	9	9	2	Bacterial	protein	of	unknown	function	(DUF948)
Med2	PF11214.8	gi|410670497|ref|YP_006922868.1|	-	0.003	17.7	0.5	11	6.3	0.0	5.5	5	0	0	5	5	5	0	Mediator	complex	subunit	2
DUF3276	PF11680.8	gi|410670497|ref|YP_006922868.1|	-	0.022	14.9	5.7	84	3.3	0.0	6.1	6	0	0	6	6	6	0	Protein	of	unknown	function	(DUF3276)
DUF1664	PF07889.12	gi|410670497|ref|YP_006922868.1|	-	0.029	14.4	31.7	0.31	11.1	5.2	7.9	8	1	1	9	9	9	0	Protein	of	unknown	function	(DUF1664)
PBECR1	PF18809.1	gi|410670497|ref|YP_006922868.1|	-	0.035	14.7	9.2	51	4.6	0.1	6.5	6	0	0	6	6	5	0	phage-Barnase-EndoU-ColicinE5/D-RelE	like	nuclease1
Tweety	PF04906.13	gi|410670497|ref|YP_006922868.1|	-	0.067	11.9	17.1	1.3	7.6	2.0	6.1	7	0	0	7	7	7	0	Tweety
Spc7	PF08317.11	gi|410670497|ref|YP_006922868.1|	-	0.12	11.3	16.1	1.2	8.0	3.7	3.3	3	0	0	3	3	3	0	Spc7	kinetochore	protein
dCache_2	PF08269.11	gi|410670497|ref|YP_006922868.1|	-	0.15	11.2	0.0	0.15	11.2	0.0	2.3	3	0	0	3	3	3	0	Cache	domain
MRP-S28	PF10213.9	gi|410670497|ref|YP_006922868.1|	-	0.17	12.3	7.0	51	4.3	0.0	5.3	6	0	0	6	6	6	0	Mitochondrial	ribosomal	subunit	protein
BLOC1_2	PF10046.9	gi|410670497|ref|YP_006922868.1|	-	0.43	10.9	22.7	3.3	8.1	0.2	6.5	4	2	1	6	6	6	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
COG2	PF06148.11	gi|410670497|ref|YP_006922868.1|	-	2	8.5	21.1	11	6.1	3.0	7.2	7	2	1	8	8	8	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
ISG65-75	PF11727.8	gi|410670497|ref|YP_006922868.1|	-	2.4	7.3	18.0	0.3	10.3	1.1	2.7	2	0	0	2	2	2	0	Invariant	surface	glycoprotein
HOASN	PF14515.6	gi|410670497|ref|YP_006922868.1|	-	3.8	8.0	6.7	4.9	7.6	1.5	3.0	2	0	0	2	2	2	0	Haem-oxygenase-associated	N-terminal	helices
APG6_N	PF17675.1	gi|410670497|ref|YP_006922868.1|	-	4.9	7.7	10.4	0.98	10.0	2.9	2.6	2	0	0	2	2	2	0	Apg6	coiled-coil	region
Fib_alpha	PF08702.10	gi|410670497|ref|YP_006922868.1|	-	8.8	6.5	18.2	5.5	7.2	0.2	4.8	5	1	1	6	6	5	0	Fibrinogen	alpha/beta	chain	family
BLYB	PF05289.11	gi|410670497|ref|YP_006922868.1|	-	9	6.5	15.4	28	4.9	0.1	5.3	5	1	0	5	5	5	0	Borrelia	hemolysin	accessory	protein
AAA	PF00004.29	gi|410670498|ref|YP_006922869.1|	-	3.9e-97	321.7	0.0	5e-49	166.1	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|410670498|ref|YP_006922869.1|	-	7.5e-31	105.7	0.1	2e-14	53.1	0.0	2.8	2	0	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|410670498|ref|YP_006922869.1|	-	9.6e-29	99.4	0.5	3.3e-28	97.7	0.5	2.0	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
RuvB_N	PF05496.12	gi|410670498|ref|YP_006922869.1|	-	1.4e-16	60.6	0.0	4.9e-09	36.1	0.0	3.0	2	1	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|410670498|ref|YP_006922869.1|	-	1.1e-14	55.1	0.0	9.5e-06	26.1	0.0	3.7	2	2	1	3	3	3	2	AAA	ATPase	domain
AAA_2	PF07724.14	gi|410670498|ref|YP_006922869.1|	-	1.1e-13	51.7	0.0	3.4e-06	27.3	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_5	PF07728.14	gi|410670498|ref|YP_006922869.1|	-	9.6e-13	48.3	1.1	2e-05	24.6	0.1	3.7	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
CDC48_2	PF02933.17	gi|410670498|ref|YP_006922869.1|	-	6.7e-12	45.0	0.8	6.7e-12	45.0	0.8	2.1	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_22	PF13401.6	gi|410670498|ref|YP_006922869.1|	-	2.3e-11	44.1	1.7	0.0017	18.6	0.0	4.5	3	2	0	3	3	2	2	AAA	domain
TIP49	PF06068.13	gi|410670498|ref|YP_006922869.1|	-	1.8e-10	40.6	0.1	0.00036	19.8	0.0	2.8	2	1	0	2	2	2	2	TIP49	P-loop	domain
AAA_33	PF13671.6	gi|410670498|ref|YP_006922869.1|	-	3e-10	40.4	0.0	0.0011	19.2	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
Sigma54_activat	PF00158.26	gi|410670498|ref|YP_006922869.1|	-	1.5e-09	37.8	0.0	0.018	14.7	0.0	4.0	2	2	0	2	2	2	2	Sigma-54	interaction	domain
AAA_14	PF13173.6	gi|410670498|ref|YP_006922869.1|	-	1.8e-09	37.7	0.0	0.0016	18.5	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.6	gi|410670498|ref|YP_006922869.1|	-	8.4e-08	32.8	0.0	0.028	15.0	0.0	2.8	3	0	0	3	3	2	2	AAA	domain
Mg_chelatase	PF01078.21	gi|410670498|ref|YP_006922869.1|	-	1.1e-07	31.5	0.1	0.0087	15.5	0.0	2.6	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
IstB_IS21	PF01695.17	gi|410670498|ref|YP_006922869.1|	-	1.1e-07	31.7	0.0	0.01	15.6	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_28	PF13521.6	gi|410670498|ref|YP_006922869.1|	-	2.4e-07	31.1	0.0	0.035	14.3	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
RNA_helicase	PF00910.22	gi|410670498|ref|YP_006922869.1|	-	1.9e-06	28.2	0.0	0.053	13.9	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
AAA_7	PF12775.7	gi|410670498|ref|YP_006922869.1|	-	2.3e-06	27.2	0.0	0.023	14.2	0.0	2.7	2	1	0	2	2	2	2	P-loop	containing	dynein	motor	region
AAA_24	PF13479.6	gi|410670498|ref|YP_006922869.1|	-	3e-06	27.1	0.1	0.11	12.2	0.1	2.7	2	1	0	2	2	2	2	AAA	domain
AAA_3	PF07726.11	gi|410670498|ref|YP_006922869.1|	-	4.8e-06	26.4	0.0	0.17	11.8	0.0	2.7	2	1	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
TsaE	PF02367.17	gi|410670498|ref|YP_006922869.1|	-	1.2e-05	25.3	0.0	0.16	12.0	0.0	2.6	2	1	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_17	PF13207.6	gi|410670498|ref|YP_006922869.1|	-	1.2e-05	25.7	0.0	0.04	14.3	0.0	2.9	2	0	0	2	2	2	2	AAA	domain
Zeta_toxin	PF06414.12	gi|410670498|ref|YP_006922869.1|	-	1.3e-05	24.5	0.0	0.18	11.1	0.0	2.6	2	0	0	2	2	2	2	Zeta	toxin
NACHT	PF05729.12	gi|410670498|ref|YP_006922869.1|	-	1.6e-05	24.9	0.1	0.41	10.5	0.1	3.9	3	1	0	3	3	3	1	NACHT	domain
AAA_19	PF13245.6	gi|410670498|ref|YP_006922869.1|	-	1.6e-05	25.3	0.2	0.19	12.1	0.0	3.2	3	0	0	3	3	3	2	AAA	domain
PhoH	PF02562.16	gi|410670498|ref|YP_006922869.1|	-	2.7e-05	23.7	0.1	0.32	10.4	0.0	3.1	3	0	0	3	3	3	2	PhoH-like	protein
Vps4_C	PF09336.10	gi|410670498|ref|YP_006922869.1|	-	2.9e-05	24.0	0.4	0.33	11.0	0.0	2.7	2	0	0	2	2	2	2	Vps4	C	terminal	oligomerisation	domain
ABC_tran	PF00005.27	gi|410670498|ref|YP_006922869.1|	-	3.1e-05	24.5	0.0	0.21	12.1	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
ATPase_2	PF01637.18	gi|410670498|ref|YP_006922869.1|	-	3.9e-05	23.7	0.0	0.63	9.9	0.0	3.2	2	2	0	2	2	2	2	ATPase	domain	predominantly	from	Archaea
AAA_30	PF13604.6	gi|410670498|ref|YP_006922869.1|	-	4.3e-05	23.3	0.1	0.49	10.1	0.0	3.0	3	0	0	3	3	3	2	AAA	domain
Parvo_NS1	PF01057.17	gi|410670498|ref|YP_006922869.1|	-	0.00012	21.3	0.3	0.55	9.3	0.0	2.9	3	0	0	3	3	3	2	Parvovirus	non-structural	protein	NS1
AAA_25	PF13481.6	gi|410670498|ref|YP_006922869.1|	-	0.00012	21.8	3.5	0.62	9.6	0.6	4.0	3	1	0	3	3	3	2	AAA	domain
DUF815	PF05673.13	gi|410670498|ref|YP_006922869.1|	-	0.00013	21.2	0.0	0.52	9.4	0.0	2.5	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
Sigma54_activ_2	PF14532.6	gi|410670498|ref|YP_006922869.1|	-	0.0005	20.2	0.0	0.73	10.0	0.0	2.6	2	0	0	2	2	2	1	Sigma-54	interaction	domain
DUF2075	PF09848.9	gi|410670498|ref|YP_006922869.1|	-	0.00056	19.3	0.0	0.12	11.6	0.0	2.2	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
TniB	PF05621.11	gi|410670498|ref|YP_006922869.1|	-	0.0008	18.9	0.0	1.7	8.0	0.0	3.4	3	1	1	4	4	4	1	Bacterial	TniB	protein
NB-ARC	PF00931.22	gi|410670498|ref|YP_006922869.1|	-	0.0014	17.9	0.0	1.1	8.4	0.0	2.5	2	0	0	2	2	2	1	NB-ARC	domain
AAA_11	PF13086.6	gi|410670498|ref|YP_006922869.1|	-	0.0016	18.2	0.0	1.1	9.0	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
Bac_DnaA	PF00308.18	gi|410670498|ref|YP_006922869.1|	-	0.0018	18.2	0.0	0.72	9.6	0.0	2.8	2	1	0	2	2	2	1	Bacterial	dnaA	protein
ATPase	PF06745.13	gi|410670498|ref|YP_006922869.1|	-	0.0027	17.1	2.8	3.9	6.7	0.0	3.6	2	2	0	3	3	3	0	KaiC
AFG1_ATPase	PF03969.16	gi|410670498|ref|YP_006922869.1|	-	0.0036	16.2	0.0	1.1	8.1	0.0	2.5	3	0	0	3	3	2	1	AFG1-like	ATPase
Cytidylate_kin	PF02224.18	gi|410670498|ref|YP_006922869.1|	-	0.0038	17.0	0.1	2.6	7.7	0.0	2.7	2	0	0	2	2	2	1	Cytidylate	kinase
NTPase_1	PF03266.15	gi|410670498|ref|YP_006922869.1|	-	0.0039	17.1	1.9	8.2	6.3	0.0	4.3	2	2	2	4	4	4	0	NTPase
Cytidylate_kin2	PF13189.6	gi|410670498|ref|YP_006922869.1|	-	0.005	17.0	0.1	1.6	8.9	0.0	2.5	2	0	0	2	2	2	1	Cytidylate	kinase-like	family
Guanylate_kin	PF00625.21	gi|410670498|ref|YP_006922869.1|	-	0.01	15.5	1.4	6.4	6.4	0.0	4.2	3	2	1	4	4	4	0	Guanylate	kinase
ATP-synt_ab	PF00006.25	gi|410670498|ref|YP_006922869.1|	-	0.013	15.2	0.0	1.9	8.1	0.0	2.4	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
IPT	PF01745.16	gi|410670498|ref|YP_006922869.1|	-	0.025	14.0	0.1	5.1	6.4	0.0	2.5	2	0	0	2	2	2	0	Isopentenyl	transferase
ResIII	PF04851.15	gi|410670498|ref|YP_006922869.1|	-	0.033	14.2	0.1	22	5.0	0.0	3.4	3	2	0	3	3	3	0	Type	III	restriction	enzyme,	res	subunit
CPT	PF07931.12	gi|410670498|ref|YP_006922869.1|	-	0.039	13.8	0.0	9.2	6.1	0.0	2.6	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
MCM	PF00493.23	gi|410670498|ref|YP_006922869.1|	-	0.062	12.4	0.1	5.4	6.0	0.0	3.0	2	2	0	2	2	2	0	MCM	P-loop	domain
Viral_helicase1	PF01443.18	gi|410670498|ref|YP_006922869.1|	-	0.12	12.1	0.0	2.5	7.8	0.0	2.2	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
AAA_29	PF13555.6	gi|410670498|ref|YP_006922869.1|	-	0.12	12.1	0.0	19	5.1	0.0	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
SKI	PF01202.22	gi|410670498|ref|YP_006922869.1|	-	0.14	12.3	0.0	18	5.4	0.0	2.7	2	0	0	2	2	2	0	Shikimate	kinase
4HFCP_synth	PF04476.13	gi|410670499|ref|YP_006922870.1|	-	2e-89	299.2	0.0	2.3e-89	299.0	0.0	1.0	1	0	0	1	1	1	1	4-HFC-P	synthase
His_biosynth	PF00977.21	gi|410670500|ref|YP_006922871.1|	-	4.7e-33	114.6	0.3	5.4e-33	114.4	0.3	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
PRAI	PF00697.22	gi|410670500|ref|YP_006922871.1|	-	0.015	15.1	0.1	0.035	13.9	0.0	1.6	2	0	0	2	2	2	0	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
HATPase_c	PF02518.26	gi|410670502|ref|YP_006922873.1|	-	6e-20	71.8	0.0	1e-19	71.1	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|410670502|ref|YP_006922873.1|	-	3.8e-19	68.7	0.0	4.4e-18	65.4	0.0	2.3	2	0	0	2	2	2	1	PAS	fold
PAS	PF00989.25	gi|410670502|ref|YP_006922873.1|	-	4e-13	49.3	0.0	2.8e-08	33.7	0.0	2.7	3	0	0	3	3	3	2	PAS	fold
PAS_9	PF13426.7	gi|410670502|ref|YP_006922873.1|	-	1.3e-10	41.4	0.0	2e-05	24.8	0.0	2.6	2	0	0	2	2	2	2	PAS	domain
PAS_4	PF08448.10	gi|410670502|ref|YP_006922873.1|	-	2.1e-10	40.8	0.0	0.00025	21.3	0.0	2.7	2	1	0	2	2	2	2	PAS	fold
HATPase_c_2	PF13581.6	gi|410670502|ref|YP_006922873.1|	-	2.4e-06	27.5	0.0	4.2e-06	26.7	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HisKA	PF00512.25	gi|410670502|ref|YP_006922873.1|	-	9.9e-06	25.5	0.1	3e-05	24.0	0.1	1.8	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_11	PF14598.6	gi|410670502|ref|YP_006922873.1|	-	0.0026	17.9	0.0	0.0055	16.8	0.0	1.5	1	0	0	1	1	1	1	PAS	domain
PAS_8	PF13188.7	gi|410670502|ref|YP_006922873.1|	-	0.0027	17.7	0.0	0.0072	16.3	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
PAS_10	PF13596.6	gi|410670502|ref|YP_006922873.1|	-	0.0092	16.6	0.0	0.048	14.3	0.0	2.3	2	0	0	2	2	2	1	PAS	domain
HATPase_c_3	PF13589.6	gi|410670502|ref|YP_006922873.1|	-	0.0093	15.8	0.0	0.021	14.7	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.6	gi|410670502|ref|YP_006922873.1|	-	0.036	14.0	0.0	0.091	12.7	0.0	1.6	1	0	0	1	1	1	0	GHKL	domain
PAS_7	PF12860.7	gi|410670502|ref|YP_006922873.1|	-	0.047	13.9	0.0	0.16	12.2	0.0	1.9	1	0	0	1	1	1	0	PAS	fold
Thymidylate_kin	PF02223.17	gi|410670503|ref|YP_006922874.1|	-	1.4e-13	51.0	0.0	1.4e-13	50.9	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	kinase
TFIIS_C	PF01096.18	gi|410670504|ref|YP_006922875.1|	-	0.0091	15.8	2.1	0.5	10.3	0.2	2.1	2	0	0	2	2	2	2	Transcription	factor	S-II	(TFIIS)
HypA	PF01155.19	gi|410670504|ref|YP_006922875.1|	-	0.015	15.3	0.3	0.015	15.3	0.3	1.0	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TackOD1	PF18551.1	gi|410670504|ref|YP_006922875.1|	-	0.018	14.7	1.7	0.021	14.5	1.7	1.1	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
zinc_ribbon_10	PF10058.9	gi|410670504|ref|YP_006922875.1|	-	0.029	14.1	1.4	0.11	12.2	0.2	1.9	1	1	1	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Zn-ribbon_8	PF09723.10	gi|410670504|ref|YP_006922875.1|	-	0.15	12.2	2.8	0.26	11.4	2.8	1.4	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-H2C2_5	PF13909.6	gi|410670504|ref|YP_006922875.1|	-	0.61	9.9	8.8	3.8	7.4	0.2	2.2	2	0	0	2	2	2	0	C2H2-type	zinc-finger	domain
DUF166	PF02593.14	gi|410670505|ref|YP_006922876.1|	-	2.6e-61	207.0	0.0	2.9e-61	206.8	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function
DapB_N	PF01113.20	gi|410670505|ref|YP_006922876.1|	-	0.078	13.1	0.0	0.22	11.6	0.0	1.8	1	1	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
HHH_8	PF14716.6	gi|410670506|ref|YP_006922877.1|	-	2.3e-24	85.5	2.7	2e-22	79.3	0.1	3.3	2	1	1	3	3	3	1	Helix-hairpin-helix	domain
HHH_5	PF14520.6	gi|410670506|ref|YP_006922877.1|	-	1.5e-15	57.5	5.3	6.8e-13	49.0	0.8	3.3	3	0	0	3	3	3	2	Helix-hairpin-helix	domain
DNA_pol_B_thumb	PF14791.6	gi|410670506|ref|YP_006922877.1|	-	3.8e-14	52.6	0.0	1.1e-13	51.1	0.0	1.9	1	0	0	1	1	1	1	DNA	polymerase	beta	thumb
PHP	PF02811.19	gi|410670506|ref|YP_006922877.1|	-	6e-09	36.4	0.0	1.4e-08	35.2	0.0	1.7	1	0	0	1	1	1	1	PHP	domain
RNase_P_p30	PF01876.16	gi|410670506|ref|YP_006922877.1|	-	1e-06	28.4	0.0	2.3e-06	27.2	0.0	1.7	1	0	0	1	1	1	1	RNase	P	subunit	p30
IMS_HHH	PF11798.8	gi|410670506|ref|YP_006922877.1|	-	4.2e-06	26.8	0.5	1	9.8	0.0	3.8	3	0	0	3	3	3	3	IMS	family	HHH	motif
DNA_pol_lambd_f	PF10391.9	gi|410670506|ref|YP_006922877.1|	-	0.00018	21.3	0.0	0.00056	19.7	0.0	1.9	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
HHH	PF00633.23	gi|410670506|ref|YP_006922877.1|	-	0.00036	20.3	1.4	0.018	14.9	0.1	3.0	3	0	0	3	3	2	1	Helix-hairpin-helix	motif
Cdd1	PF11731.8	gi|410670506|ref|YP_006922877.1|	-	0.0026	17.9	0.0	0.28	11.4	0.0	2.7	2	0	0	2	2	2	1	Pathogenicity	locus
DNA_pol_B_palm	PF14792.6	gi|410670506|ref|YP_006922877.1|	-	0.022	15.0	0.0	0.13	12.5	0.0	2.1	2	0	0	2	2	2	0	DNA	polymerase	beta	palm
HHH_2	PF12826.7	gi|410670506|ref|YP_006922877.1|	-	0.078	13.1	1.2	2.4	8.3	0.0	3.0	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
DUF4346	PF14251.6	gi|410670506|ref|YP_006922877.1|	-	0.086	12.9	0.0	0.21	11.6	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4346)
DUF2114	PF09887.9	gi|410670507|ref|YP_006922878.1|	-	7.4e-238	789.4	5.2	8.5e-238	789.2	5.2	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2114)
RL10P_insert	PF17777.1	gi|410670507|ref|YP_006922878.1|	-	0.1	12.6	0.0	0.72	9.9	0.0	2.3	3	0	0	3	3	3	0	Insertion	domain	in	60S	ribosomal	protein	L10P
Thioredoxin	PF00085.20	gi|410670508|ref|YP_006922879.1|	-	1.2e-28	99.1	0.0	1.5e-28	98.8	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|410670508|ref|YP_006922879.1|	-	1.3e-05	25.5	0.1	9.6e-05	22.8	0.1	2.0	1	1	0	1	1	1	1	Thioredoxin-like	domain
OST3_OST6	PF04756.13	gi|410670508|ref|YP_006922879.1|	-	0.00018	21.0	0.0	0.00022	20.7	0.0	1.2	1	0	0	1	1	1	1	OST3	/	OST6	family,	transporter	family
Thioredoxin_8	PF13905.6	gi|410670508|ref|YP_006922879.1|	-	0.00024	21.4	0.0	0.0049	17.2	0.0	2.1	1	1	1	2	2	2	1	Thioredoxin-like
Thioredoxin_9	PF14595.6	gi|410670508|ref|YP_006922879.1|	-	0.0027	17.5	0.0	0.003	17.3	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_3	PF13192.6	gi|410670508|ref|YP_006922879.1|	-	0.013	15.5	0.0	0.022	14.8	0.0	1.4	1	1	0	1	1	1	0	Thioredoxin	domain
Phosducin	PF02114.16	gi|410670508|ref|YP_006922879.1|	-	0.025	13.6	0.0	0.03	13.3	0.0	1.1	1	0	0	1	1	1	0	Phosducin
Redoxin	PF08534.10	gi|410670508|ref|YP_006922879.1|	-	0.069	12.9	0.1	0.2	11.4	0.1	1.7	1	1	1	2	2	2	0	Redoxin
AhpC-TSA	PF00578.21	gi|410670508|ref|YP_006922879.1|	-	0.075	13.0	0.0	0.15	12.0	0.0	1.5	1	1	1	2	2	2	0	AhpC/TSA	family
HyaE	PF07449.11	gi|410670508|ref|YP_006922879.1|	-	0.11	12.5	0.0	0.16	11.9	0.0	1.3	1	0	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
zf-C2H2_3	PF13878.6	gi|410670509|ref|YP_006922880.1|	-	0.0012	18.6	0.4	0.0085	15.9	0.0	2.0	2	0	0	2	2	2	1	zinc-finger	of	acetyl-transferase	ESCO
A2L_zn_ribbon	PF08792.10	gi|410670509|ref|YP_006922880.1|	-	0.0034	17.1	2.5	0.023	14.4	0.3	2.1	2	0	0	2	2	2	1	A2L	zinc	ribbon	domain
DZR	PF12773.7	gi|410670509|ref|YP_006922880.1|	-	0.0067	16.4	0.1	0.009	16.0	0.1	1.3	1	1	0	1	1	1	1	Double	zinc	ribbon
Zn_ribbon_SprT	PF17283.2	gi|410670509|ref|YP_006922880.1|	-	0.037	13.9	2.3	0.052	13.5	0.3	1.9	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|410670509|ref|YP_006922880.1|	-	0.063	13.4	1.0	0.14	12.3	1.0	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|410670509|ref|YP_006922880.1|	-	0.11	12.3	2.5	1.3	8.8	0.5	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
C1_2	PF03107.16	gi|410670509|ref|YP_006922880.1|	-	0.17	12.2	2.2	0.65	10.4	2.2	1.8	1	1	0	1	1	1	0	C1	domain
zf_UBZ	PF18439.1	gi|410670509|ref|YP_006922880.1|	-	0.24	11.0	1.8	0.31	10.7	0.1	1.9	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-C2H2_11	PF16622.5	gi|410670509|ref|YP_006922880.1|	-	0.46	10.3	3.9	1.2	9.0	0.2	2.1	2	0	0	2	2	2	0	zinc-finger	C2H2-type
zf-FPG_IleRS	PF06827.14	gi|410670509|ref|YP_006922880.1|	-	0.94	9.4	8.6	17	5.4	8.6	2.1	1	1	0	1	1	1	0	Zinc	finger	found	in	FPG	and	IleRS
Mrr_cat	PF04471.12	gi|410670510|ref|YP_006922881.1|	-	1.2e-28	99.5	0.0	2.4e-28	98.5	0.0	1.5	1	0	0	1	1	1	1	Restriction	endonuclease
Mrr_cat_2	PF13156.6	gi|410670510|ref|YP_006922881.1|	-	5.2e-10	39.3	0.0	8.7e-09	35.4	0.0	2.3	2	0	0	2	2	2	1	Restriction	endonuclease
bPH_3	PF14470.6	gi|410670510|ref|YP_006922881.1|	-	0.0066	16.8	0.4	0.25	11.7	0.0	2.4	1	1	1	2	2	2	1	Bacterial	PH	domain
HMA	PF00403.26	gi|410670511|ref|YP_006922882.1|	-	6.1e-17	61.8	0.2	6.7e-17	61.7	0.2	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
TusA	PF01206.17	gi|410670511|ref|YP_006922882.1|	-	0.12	12.2	0.0	0.29	11.0	0.0	1.6	2	0	0	2	2	2	0	Sulfurtransferase	TusA
E1-E2_ATPase	PF00122.20	gi|410670512|ref|YP_006922883.1|	-	1.3e-54	184.4	1.9	2.7e-54	183.4	1.9	1.6	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|410670512|ref|YP_006922883.1|	-	2.7e-50	171.6	4.9	5.7e-50	170.5	4.9	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|410670512|ref|YP_006922883.1|	-	1.5e-48	163.0	6.2	4.1e-16	59.2	0.0	3.8	3	0	0	3	3	3	3	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|410670512|ref|YP_006922883.1|	-	1e-07	31.9	2.5	5.7e-05	23.0	0.5	2.8	2	1	1	3	3	3	2	haloacid	dehalogenase-like	hydrolase
RRM_3	PF08777.11	gi|410670512|ref|YP_006922883.1|	-	0.0085	16.1	0.4	4.4	7.4	0.0	3.6	3	1	1	4	4	4	1	RNA	binding	motif
Tox-PL-2	PF15643.6	gi|410670512|ref|YP_006922883.1|	-	0.017	15.2	0.3	5.2	7.2	0.1	2.9	1	1	1	2	2	2	0	Papain	fold	toxin	2
MGS	PF02142.22	gi|410670512|ref|YP_006922883.1|	-	0.03	14.5	0.2	0.086	13.0	0.2	1.8	1	0	0	1	1	1	0	MGS-like	domain
HAD	PF12710.7	gi|410670512|ref|YP_006922883.1|	-	0.04	14.3	0.1	0.18	12.2	0.1	2.0	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|410670512|ref|YP_006922883.1|	-	0.073	13.2	0.2	3.3	7.9	0.0	3.4	4	0	0	4	4	4	0	Haloacid	dehalogenase-like	hydrolase
GARS_C	PF02843.16	gi|410670512|ref|YP_006922883.1|	-	0.35	11.2	2.2	1.3	9.4	0.2	2.8	2	1	1	3	3	3	0	Phosphoribosylglycinamide	synthetase,	C	domain
Fer2_BFD	PF04324.15	gi|410670512|ref|YP_006922883.1|	-	2	8.8	5.0	20	5.6	0.0	3.7	4	0	0	4	4	3	0	BFD-like	[2Fe-2S]	binding	domain
Keratin_assoc	PF09775.9	gi|410670513|ref|YP_006922884.1|	-	0.042	13.5	2.3	0.051	13.2	2.3	1.1	1	0	0	1	1	1	0	Keratinocyte-associated	protein	2
DUF2070	PF09843.9	gi|410670513|ref|YP_006922884.1|	-	0.086	11.1	2.1	0.097	10.9	2.1	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
Radical_SAM	PF04055.21	gi|410670514|ref|YP_006922885.1|	-	3.7e-11	43.7	0.2	5.3e-11	43.2	0.2	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Rep_1	PF01446.17	gi|410670514|ref|YP_006922885.1|	-	0.22	10.9	0.1	0.37	10.2	0.1	1.3	1	0	0	1	1	1	0	Replication	protein
FrhB_FdhB_C	PF04432.13	gi|410670515|ref|YP_006922886.1|	-	1.2e-35	122.6	0.0	1.2e-35	122.6	0.0	1.8	2	0	0	2	2	2	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	C	terminus
FrhB_FdhB_N	PF04422.13	gi|410670515|ref|YP_006922886.1|	-	1.4e-23	82.9	0.2	7e-23	80.6	0.1	2.2	2	0	0	2	2	2	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	N-term
YHS	PF04945.13	gi|410670515|ref|YP_006922886.1|	-	4.2e-10	39.6	2.0	9.5e-10	38.4	2.0	1.5	1	0	0	1	1	1	1	YHS	domain
Fer4_10	PF13237.6	gi|410670515|ref|YP_006922886.1|	-	2.8e-05	24.2	11.8	2.8e-05	24.2	11.8	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410670515|ref|YP_006922886.1|	-	0.00082	19.4	12.4	0.12	12.5	3.2	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|410670515|ref|YP_006922886.1|	-	0.0012	19.0	16.2	0.0086	16.2	14.0	3.0	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|410670515|ref|YP_006922886.1|	-	0.0018	18.0	20.0	0.019	14.8	4.2	3.0	3	0	0	3	3	3	2	4Fe-4S	binding	domain
zf-FCS	PF06467.14	gi|410670515|ref|YP_006922886.1|	-	0.0033	17.3	2.4	0.0033	17.3	2.4	3.0	4	0	0	4	4	3	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
Fer4_17	PF13534.6	gi|410670515|ref|YP_006922886.1|	-	0.004	17.7	15.9	0.25	11.9	2.8	3.4	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410670515|ref|YP_006922886.1|	-	0.007	16.8	19.1	0.019	15.5	3.2	3.3	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|410670515|ref|YP_006922886.1|	-	0.011	16.7	12.5	0.34	11.9	1.0	3.4	3	0	0	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|410670515|ref|YP_006922886.1|	-	0.022	14.9	12.1	0.07	13.3	12.1	1.9	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|410670515|ref|YP_006922886.1|	-	0.029	14.9	17.4	0.47	11.1	15.0	3.4	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410670515|ref|YP_006922886.1|	-	0.12	12.5	19.3	0.29	11.3	4.2	3.2	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|410670515|ref|YP_006922886.1|	-	0.12	12.8	18.9	0.15	12.6	3.3	3.2	2	1	3	5	5	5	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|410670515|ref|YP_006922886.1|	-	1.9	8.7	10.3	0.1	12.8	1.8	2.4	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
CxC7	PF18866.1	gi|410670515|ref|YP_006922886.1|	-	2	8.6	6.0	0.59	10.3	0.9	2.7	2	1	1	3	3	3	0	CxC7	like	cysteine	cluster	associated	with	KDZ	transposases
Fer4_15	PF13459.6	gi|410670515|ref|YP_006922886.1|	-	2.7	8.8	9.3	9.2	7.1	1.8	2.9	2	1	0	2	2	2	0	4Fe-4S	single	cluster	domain
Methyltransf_31	PF13847.6	gi|410670516|ref|YP_006922887.1|	-	1.5e-27	96.3	0.0	2e-27	95.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410670516|ref|YP_006922887.1|	-	1.4e-25	89.7	0.0	2.2e-25	89.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|410670516|ref|YP_006922887.1|	-	1.2e-23	83.6	0.0	2e-23	82.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|410670516|ref|YP_006922887.1|	-	3.5e-20	72.3	0.0	6.5e-20	71.5	0.0	1.4	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|410670516|ref|YP_006922887.1|	-	1.6e-18	67.2	0.0	2.5e-18	66.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|410670516|ref|YP_006922887.1|	-	1.1e-15	57.8	0.0	1.4e-15	57.5	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.17	gi|410670516|ref|YP_006922887.1|	-	9.2e-09	35.0	0.0	2.9e-08	33.4	0.0	1.7	1	1	0	1	1	1	1	Putative	methyltransferase
MTS	PF05175.14	gi|410670516|ref|YP_006922887.1|	-	3.4e-08	33.2	0.0	6.1e-08	32.4	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	small	domain
NodS	PF05401.11	gi|410670516|ref|YP_006922887.1|	-	1.1e-07	31.7	0.0	1.5e-07	31.3	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
CMAS	PF02353.20	gi|410670516|ref|YP_006922887.1|	-	6.5e-06	25.6	0.0	8.5e-06	25.2	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_9	PF08003.11	gi|410670516|ref|YP_006922887.1|	-	1.4e-05	24.2	0.0	2.1e-05	23.6	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
MetW	PF07021.12	gi|410670516|ref|YP_006922887.1|	-	1.5e-05	24.7	0.0	2.3e-05	24.1	0.0	1.1	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
TehB	PF03848.14	gi|410670516|ref|YP_006922887.1|	-	2.6e-05	23.7	0.0	3.7e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
PCMT	PF01135.19	gi|410670516|ref|YP_006922887.1|	-	4.8e-05	23.2	0.0	6.8e-05	22.7	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_2	PF00891.18	gi|410670516|ref|YP_006922887.1|	-	0.00031	20.1	0.0	0.00037	19.8	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase	domain
Methyltransf_18	PF12847.7	gi|410670516|ref|YP_006922887.1|	-	0.00065	19.7	0.0	0.001	19.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
CheR	PF01739.18	gi|410670516|ref|YP_006922887.1|	-	0.0021	17.6	0.3	1.3	8.5	0.0	2.2	1	1	1	2	2	2	2	CheR	methyltransferase,	SAM	binding	domain
GCD14	PF08704.10	gi|410670516|ref|YP_006922887.1|	-	0.0032	17.2	0.0	0.0043	16.8	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
TPMT	PF05724.11	gi|410670516|ref|YP_006922887.1|	-	0.0046	16.6	0.0	0.0069	16.1	0.0	1.2	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
Methyltransf_PK	PF05891.12	gi|410670516|ref|YP_006922887.1|	-	0.0075	15.8	0.0	0.01	15.4	0.0	1.1	1	0	0	1	1	1	1	AdoMet	dependent	proline	di-methyltransferase
Methyltransf_8	PF05148.15	gi|410670516|ref|YP_006922887.1|	-	0.031	14.1	0.0	0.054	13.3	0.0	1.5	1	1	0	1	1	1	0	Hypothetical	methyltransferase
ADH_zinc_N	PF00107.26	gi|410670516|ref|YP_006922887.1|	-	0.037	14.0	0.0	0.064	13.2	0.0	1.4	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
Methyltransf_32	PF13679.6	gi|410670516|ref|YP_006922887.1|	-	0.045	13.8	0.0	0.066	13.2	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
RrnaAD	PF00398.20	gi|410670516|ref|YP_006922887.1|	-	0.16	11.0	0.0	0.23	10.5	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
N2227	PF07942.12	gi|410670516|ref|YP_006922887.1|	-	0.19	10.9	0.0	5.3	6.2	0.0	2.1	1	1	1	2	2	2	0	N2227-like	protein
CooT	PF10133.9	gi|410670517|ref|YP_006922888.1|	-	3.8e-16	59.1	1.0	4.2e-16	59.0	1.0	1.0	1	0	0	1	1	1	1	CO	dehydrogenase	accessory	protein	CooT
CbiA	PF01656.23	gi|410670518|ref|YP_006922889.1|	-	5.9e-18	65.2	0.0	1.1e-17	64.3	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|410670518|ref|YP_006922889.1|	-	4.8e-13	49.4	0.1	1.1e-12	48.3	0.1	1.6	1	1	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.15	gi|410670518|ref|YP_006922889.1|	-	6.3e-13	48.6	2.3	1.7e-12	47.2	0.2	2.2	2	1	0	2	2	2	1	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|410670518|ref|YP_006922889.1|	-	9.6e-11	41.6	0.0	1.7e-07	30.9	0.0	2.2	2	0	0	2	2	2	2	Cellulose	biosynthesis	protein	BcsQ
Fer4_NifH	PF00142.18	gi|410670518|ref|YP_006922889.1|	-	1e-06	28.4	2.4	3.8e-05	23.3	0.0	2.3	1	1	1	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ParA	PF10609.9	gi|410670518|ref|YP_006922889.1|	-	6.6e-06	25.8	1.1	1.7e-05	24.4	0.2	1.9	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
AAA_24	PF13479.6	gi|410670518|ref|YP_006922889.1|	-	3e-05	23.8	0.5	0.00044	20.0	0.5	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|410670518|ref|YP_006922889.1|	-	0.00018	21.3	0.1	0.00039	20.2	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
MeaB	PF03308.16	gi|410670518|ref|YP_006922889.1|	-	0.00034	19.7	0.1	0.00056	19.0	0.1	1.3	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
LpxK	PF02606.14	gi|410670518|ref|YP_006922889.1|	-	0.00062	19.0	0.7	0.024	13.7	0.2	2.2	2	0	0	2	2	2	1	Tetraacyldisaccharide-1-P	4'-kinase
APS_kinase	PF01583.20	gi|410670518|ref|YP_006922889.1|	-	0.0008	19.3	0.0	0.0017	18.3	0.0	1.6	1	0	0	1	1	1	1	Adenylylsulphate	kinase
KTI12	PF08433.10	gi|410670518|ref|YP_006922889.1|	-	0.00087	18.8	0.0	0.023	14.1	0.0	2.4	2	0	0	2	2	2	1	Chromatin	associated	protein	KTI12
SRP54	PF00448.22	gi|410670518|ref|YP_006922889.1|	-	0.0014	18.3	1.3	0.0031	17.2	0.4	1.9	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
ABC_tran	PF00005.27	gi|410670518|ref|YP_006922889.1|	-	0.0019	18.7	0.0	0.0037	17.8	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
NTPase_1	PF03266.15	gi|410670518|ref|YP_006922889.1|	-	0.0019	18.1	0.0	0.0034	17.3	0.0	1.5	1	0	0	1	1	1	1	NTPase
CLP1_P	PF16575.5	gi|410670518|ref|YP_006922889.1|	-	0.002	18.0	0.1	0.011	15.6	0.0	2.1	2	1	0	2	2	2	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
MipZ	PF09140.11	gi|410670518|ref|YP_006922889.1|	-	0.0027	17.0	0.1	0.0067	15.8	0.0	1.7	2	0	0	2	2	2	1	ATPase	MipZ
ATP_bind_1	PF03029.17	gi|410670518|ref|YP_006922889.1|	-	0.0028	17.5	0.1	0.0052	16.6	0.0	1.5	1	1	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
AAA_16	PF13191.6	gi|410670518|ref|YP_006922889.1|	-	0.0031	17.9	0.0	0.0042	17.5	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_18	PF13238.6	gi|410670518|ref|YP_006922889.1|	-	0.021	15.4	0.0	0.059	13.9	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
CTP_synth_N	PF06418.14	gi|410670518|ref|YP_006922889.1|	-	0.026	13.9	0.1	0.047	13.0	0.1	1.4	1	0	0	1	1	1	0	CTP	synthase	N-terminus
Thymidylate_kin	PF02223.17	gi|410670518|ref|YP_006922889.1|	-	0.044	13.5	0.0	0.11	12.2	0.0	1.6	1	0	0	1	1	1	0	Thymidylate	kinase
VirC1	PF07015.11	gi|410670518|ref|YP_006922889.1|	-	0.044	13.1	0.2	0.1	11.9	0.1	1.7	2	0	0	2	2	2	0	VirC1	protein
MobB	PF03205.14	gi|410670518|ref|YP_006922889.1|	-	0.048	13.6	0.5	0.098	12.6	0.1	1.8	2	0	0	2	2	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
CENP-B_N	PF04218.13	gi|410670518|ref|YP_006922889.1|	-	0.084	12.5	0.0	0.58	9.8	0.0	2.1	2	0	0	2	2	2	0	CENP-B	N-terminal	DNA-binding	domain
ACT_7	PF13840.6	gi|410670518|ref|YP_006922889.1|	-	0.097	12.5	0.1	0.25	11.2	0.1	1.7	1	0	0	1	1	1	0	ACT	domain
cobW	PF02492.19	gi|410670518|ref|YP_006922889.1|	-	0.098	12.2	0.3	0.58	9.7	0.1	2.2	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
DUF87	PF01935.17	gi|410670518|ref|YP_006922889.1|	-	0.15	12.2	1.5	0.22	11.6	0.3	1.8	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
GTP_EFTU	PF00009.27	gi|410670518|ref|YP_006922889.1|	-	0.19	11.2	1.0	1.4	8.4	0.0	2.4	3	0	0	3	3	3	0	Elongation	factor	Tu	GTP	binding	domain
DDE_Tnp_1	PF01609.21	gi|410670521|ref|YP_006922892.1|	-	3.4e-09	36.6	6.1	9.6e-09	35.2	6.1	1.7	1	1	0	1	1	1	1	Transposase	DDE	domain
Methyltransf_11	PF08241.12	gi|410670522|ref|YP_006922893.1|	-	1.3e-21	77.1	0.0	2.2e-21	76.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|410670522|ref|YP_006922893.1|	-	1.6e-19	70.4	0.0	2.6e-19	69.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|410670522|ref|YP_006922893.1|	-	1e-16	61.1	0.0	1.2e-16	60.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|410670522|ref|YP_006922893.1|	-	4.5e-13	49.1	0.0	5.4e-13	48.8	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|410670522|ref|YP_006922893.1|	-	6.6e-13	48.8	0.0	8.8e-13	48.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|410670522|ref|YP_006922893.1|	-	4e-09	37.1	0.0	6e-09	36.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|410670522|ref|YP_006922893.1|	-	3.6e-05	23.4	0.0	6.3e-05	22.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_8	PF05148.15	gi|410670522|ref|YP_006922893.1|	-	6.4e-05	22.9	0.0	0.00014	21.8	0.0	1.7	1	1	0	1	1	1	1	Hypothetical	methyltransferase
TehB	PF03848.14	gi|410670522|ref|YP_006922893.1|	-	0.00015	21.3	0.0	0.00026	20.5	0.0	1.5	1	1	0	1	1	1	1	Tellurite	resistance	protein	TehB
NodS	PF05401.11	gi|410670522|ref|YP_006922893.1|	-	0.00037	20.2	0.0	0.00049	19.8	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
MetW	PF07021.12	gi|410670522|ref|YP_006922893.1|	-	0.0016	18.1	0.0	0.0025	17.4	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
CheR	PF01739.18	gi|410670522|ref|YP_006922893.1|	-	0.017	14.6	0.1	8.6	5.8	0.0	2.7	2	1	0	2	2	2	0	CheR	methyltransferase,	SAM	binding	domain
Methyltransf_18	PF12847.7	gi|410670522|ref|YP_006922893.1|	-	0.024	14.6	0.0	0.042	13.8	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
CMAS	PF02353.20	gi|410670522|ref|YP_006922893.1|	-	0.1	11.9	0.0	0.12	11.7	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_29	PF03141.16	gi|410670522|ref|YP_006922893.1|	-	0.14	10.7	0.0	0.18	10.3	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
DUF772	PF05598.11	gi|410670524|ref|YP_006922895.1|	-	1.5e-22	79.4	0.1	4e-22	78.0	0.0	1.7	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|410670524|ref|YP_006922895.1|	-	1.5e-14	54.2	0.1	2.9e-14	53.2	0.1	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_4	PF13359.6	gi|410670524|ref|YP_006922895.1|	-	0.00025	20.8	0.1	0.00045	19.9	0.1	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1_3	PF13612.6	gi|410670524|ref|YP_006922895.1|	-	0.00048	20.2	0.1	0.001	19.1	0.1	1.6	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|410670524|ref|YP_006922895.1|	-	0.037	14.3	0.2	0.069	13.4	0.2	1.4	1	0	0	1	1	1	0	Transposase	DDE	domain
ABC1	PF03109.16	gi|410670525|ref|YP_006922896.1|	-	1.7e-39	134.7	0.0	3.7e-39	133.6	0.0	1.6	1	0	0	1	1	1	1	ABC1	family
Pkinase	PF00069.25	gi|410670525|ref|YP_006922896.1|	-	8.3e-06	25.4	0.0	2e-05	24.1	0.0	1.7	1	0	0	1	1	1	1	Protein	kinase	domain
APH	PF01636.23	gi|410670525|ref|YP_006922896.1|	-	4e-05	23.7	0.0	7.9e-05	22.7	0.0	1.5	1	0	0	1	1	1	1	Phosphotransferase	enzyme	family
WaaY	PF06176.11	gi|410670525|ref|YP_006922896.1|	-	0.00011	21.9	0.2	0.00027	20.7	0.2	1.7	1	0	0	1	1	1	1	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
Pkinase_Tyr	PF07714.17	gi|410670525|ref|YP_006922896.1|	-	0.093	12.0	0.0	0.28	10.4	0.0	1.8	1	1	0	1	1	1	0	Protein	tyrosine	kinase
Radical_SAM	PF04055.21	gi|410670526|ref|YP_006922897.1|	-	1.1e-18	68.2	0.0	2.2e-18	67.2	0.0	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|410670526|ref|YP_006922897.1|	-	1.3e-05	25.3	0.6	0.00011	22.3	0.0	2.2	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|410670526|ref|YP_006922897.1|	-	2.6e-05	24.5	0.1	8.3e-05	22.9	0.0	1.8	1	1	1	2	2	2	1	4Fe-4S	single	cluster	domain
TrmB	PF01978.19	gi|410670527|ref|YP_006922898.1|	-	4.7e-19	68.0	0.0	1.8e-18	66.1	0.0	2.0	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|410670527|ref|YP_006922898.1|	-	0.00026	20.7	0.1	0.00074	19.3	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
Regulator_TrmB	PF11495.8	gi|410670527|ref|YP_006922898.1|	-	0.00056	19.2	0.2	0.0022	17.2	0.2	1.9	1	1	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|410670527|ref|YP_006922898.1|	-	0.00078	19.3	0.0	0.0013	18.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|410670527|ref|YP_006922898.1|	-	0.015	15.7	0.0	0.037	14.4	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
MarR	PF01047.22	gi|410670527|ref|YP_006922898.1|	-	0.044	13.7	0.0	0.079	12.9	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Polysacc_synt_4	PF04669.13	gi|410670527|ref|YP_006922898.1|	-	0.06	12.9	0.0	0.12	11.9	0.0	1.5	1	0	0	1	1	1	0	Polysaccharide	biosynthesis
HTH_Crp_2	PF13545.6	gi|410670527|ref|YP_006922898.1|	-	0.14	12.2	0.0	0.34	10.9	0.0	1.8	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
DUF742	PF05331.11	gi|410670527|ref|YP_006922898.1|	-	0.16	11.8	0.0	0.26	11.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
Glu-tRNAGln	PF02686.15	gi|410670529|ref|YP_006922900.1|	-	1.2e-18	67.2	0.5	1.5e-18	66.8	0.5	1.1	1	0	0	1	1	1	1	Glu-tRNAGln	amidotransferase	C	subunit
Amidase	PF01425.21	gi|410670530|ref|YP_006922901.1|	-	9.6e-159	529.1	0.1	1.1e-158	528.9	0.1	1.0	1	0	0	1	1	1	1	Amidase
GatB_N	PF02934.15	gi|410670531|ref|YP_006922902.1|	-	9.6e-100	333.5	0.0	1.3e-99	333.1	0.0	1.1	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|410670531|ref|YP_006922902.1|	-	6.9e-39	133.1	2.7	9.8e-39	132.6	2.7	1.2	1	0	0	1	1	1	1	GatB	domain
zf-Di19	PF05605.12	gi|410670531|ref|YP_006922902.1|	-	0.038	14.3	0.1	0.07	13.4	0.1	1.4	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
HTH_20	PF12840.7	gi|410670532|ref|YP_006922903.1|	-	0.0057	16.7	0.0	0.0079	16.2	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF5486	PF17588.2	gi|410670532|ref|YP_006922903.1|	-	0.0061	16.4	1.2	0.24	11.3	0.4	2.3	2	0	0	2	2	2	1	Family	of	unknown	function	(DUF5486)
DUF4364	PF14277.6	gi|410670532|ref|YP_006922903.1|	-	0.056	13.2	0.2	0.29	10.9	0.0	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4364)
SUIM_assoc	PF16619.5	gi|410670532|ref|YP_006922903.1|	-	0.059	13.4	0.6	0.089	12.9	0.6	1.5	1	0	0	1	1	1	0	Unstructured	region	C-term	to	UIM	in	Ataxin3
HTH_45	PF14947.6	gi|410670532|ref|YP_006922903.1|	-	0.086	12.8	0.2	0.29	11.1	0.0	2.0	2	1	0	2	2	2	0	Winged	helix-turn-helix
Ribosomal_L40e	PF01020.17	gi|410670533|ref|YP_006922904.1|	-	2.8e-06	27.1	8.0	3.4e-06	26.9	8.0	1.1	1	0	0	1	1	1	1	Ribosomal	L40e	family
zf-RanBP	PF00641.18	gi|410670533|ref|YP_006922904.1|	-	0.0057	15.9	5.3	0.0077	15.5	5.3	1.2	1	0	0	1	1	1	1	Zn-finger	in	Ran	binding	protein	and	others
DZR	PF12773.7	gi|410670533|ref|YP_006922904.1|	-	0.0077	16.2	1.2	0.0085	16.1	1.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|410670533|ref|YP_006922904.1|	-	0.014	15.1	1.4	0.021	14.5	1.4	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
PcrB	PF01884.17	gi|410670534|ref|YP_006922905.1|	-	1.5e-65	220.8	0.4	1.8e-65	220.6	0.4	1.0	1	0	0	1	1	1	1	PcrB	family
His_biosynth	PF00977.21	gi|410670534|ref|YP_006922905.1|	-	1.7e-05	24.4	0.1	2.7e-05	23.7	0.1	1.3	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
DHO_dh	PF01180.21	gi|410670534|ref|YP_006922905.1|	-	0.03	13.5	1.0	0.047	12.9	1.0	1.3	1	0	0	1	1	1	0	Dihydroorotate	dehydrogenase
Ribul_P_3_epim	PF00834.19	gi|410670534|ref|YP_006922905.1|	-	0.032	13.6	0.5	0.055	12.8	0.5	1.4	1	0	0	1	1	1	0	Ribulose-phosphate	3	epimerase	family
PEP_hydrolase	PF09370.10	gi|410670534|ref|YP_006922905.1|	-	0.037	13.2	0.4	0.08	12.2	0.4	1.5	1	0	0	1	1	1	0	Phosphoenolpyruvate	hydrolase-like
Trp_syntA	PF00290.20	gi|410670534|ref|YP_006922905.1|	-	0.12	11.2	0.8	0.81	8.5	0.4	2.0	2	0	0	2	2	2	0	Tryptophan	synthase	alpha	chain
ABC_tran	PF00005.27	gi|410670535|ref|YP_006922906.1|	-	4.3e-56	189.2	0.0	1.1e-28	100.5	0.0	2.7	2	1	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|410670535|ref|YP_006922906.1|	-	1.2e-11	45.0	3.6	0.0032	17.3	0.3	4.2	3	1	1	4	4	4	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|410670535|ref|YP_006922906.1|	-	2.7e-09	37.2	1.0	7.8e-05	22.6	0.1	2.5	2	0	0	2	2	2	2	RsgA	GTPase
AAA_29	PF13555.6	gi|410670535|ref|YP_006922906.1|	-	6.9e-08	32.1	4.8	0.00062	19.4	0.1	2.9	3	0	0	3	3	2	2	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|410670535|ref|YP_006922906.1|	-	4.2e-07	30.7	5.2	0.0027	18.2	0.6	2.8	2	1	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|410670535|ref|YP_006922906.1|	-	5.4e-07	30.1	0.0	0.037	14.4	0.0	2.5	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|410670535|ref|YP_006922906.1|	-	3e-06	27.5	7.6	0.025	14.9	0.3	4.3	4	2	0	4	4	4	2	AAA	domain
TniB	PF05621.11	gi|410670535|ref|YP_006922906.1|	-	1.2e-05	24.8	3.7	0.0059	16.0	0.0	4.1	4	0	0	4	4	4	1	Bacterial	TniB	protein
SMC_N	PF02463.19	gi|410670535|ref|YP_006922906.1|	-	5.8e-05	22.6	0.5	0.13	11.7	0.0	3.8	3	2	1	4	4	4	1	RecF/RecN/SMC	N	terminal	domain
AAA_24	PF13479.6	gi|410670535|ref|YP_006922906.1|	-	7.4e-05	22.6	0.1	0.52	10.0	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_30	PF13604.6	gi|410670535|ref|YP_006922906.1|	-	8.8e-05	22.3	1.6	0.29	10.8	0.2	2.6	3	0	0	3	3	2	2	AAA	domain
MobB	PF03205.14	gi|410670535|ref|YP_006922906.1|	-	0.00022	21.1	1.4	0.17	11.8	0.2	2.5	2	0	0	2	2	2	2	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_15	PF13175.6	gi|410670535|ref|YP_006922906.1|	-	0.00029	20.6	0.2	0.017	14.8	0.0	2.4	2	0	0	2	2	2	1	AAA	ATPase	domain
PduV-EutP	PF10662.9	gi|410670535|ref|YP_006922906.1|	-	0.00039	20.2	0.7	0.34	10.7	0.0	2.4	2	0	0	2	2	2	2	Ethanolamine	utilisation	-	propanediol	utilisation
PRK	PF00485.18	gi|410670535|ref|YP_006922906.1|	-	0.00044	20.0	0.0	0.17	11.6	0.0	2.3	2	0	0	2	2	2	1	Phosphoribulokinase	/	Uridine	kinase	family
ATPase_2	PF01637.18	gi|410670535|ref|YP_006922906.1|	-	0.0006	19.8	0.2	0.47	10.3	0.0	2.6	2	0	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
cobW	PF02492.19	gi|410670535|ref|YP_006922906.1|	-	0.00061	19.4	1.7	0.43	10.2	0.2	2.5	2	0	0	2	2	2	2	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_18	PF13238.6	gi|410670535|ref|YP_006922906.1|	-	0.00068	20.2	5.2	0.1	13.1	0.1	3.6	3	1	0	3	3	3	1	AAA	domain
SbcCD_C	PF13558.6	gi|410670535|ref|YP_006922906.1|	-	0.00092	19.4	0.2	0.71	10.1	0.0	3.7	2	2	0	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_25	PF13481.6	gi|410670535|ref|YP_006922906.1|	-	0.00096	18.8	0.3	0.37	10.3	0.1	3.0	3	0	0	3	3	3	1	AAA	domain
G-alpha	PF00503.20	gi|410670535|ref|YP_006922906.1|	-	0.001	18.3	0.0	0.21	10.7	0.0	2.3	2	0	0	2	2	2	1	G-protein	alpha	subunit
NACHT	PF05729.12	gi|410670535|ref|YP_006922906.1|	-	0.0017	18.3	4.7	0.76	9.7	0.2	2.6	2	0	0	2	2	2	2	NACHT	domain
TsaE	PF02367.17	gi|410670535|ref|YP_006922906.1|	-	0.0022	18.0	1.6	0.57	10.2	0.1	2.4	2	0	0	2	2	2	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NB-ARC	PF00931.22	gi|410670535|ref|YP_006922906.1|	-	0.0034	16.6	1.3	0.88	8.7	0.2	2.4	2	0	0	2	2	2	1	NB-ARC	domain
Rad17	PF03215.15	gi|410670535|ref|YP_006922906.1|	-	0.0035	17.3	0.1	1.1	9.1	0.0	2.6	2	0	0	2	2	2	1	Rad17	P-loop	domain
Zeta_toxin	PF06414.12	gi|410670535|ref|YP_006922906.1|	-	0.0042	16.4	0.4	0.63	9.3	0.0	2.3	2	0	0	2	2	2	1	Zeta	toxin
PhoH	PF02562.16	gi|410670535|ref|YP_006922906.1|	-	0.0054	16.2	0.2	4.1	6.8	0.0	2.6	2	0	0	2	2	2	0	PhoH-like	protein
ATP-synt_ab	PF00006.25	gi|410670535|ref|YP_006922906.1|	-	0.0067	16.1	0.0	3.6	7.2	0.0	2.3	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
NTPase_1	PF03266.15	gi|410670535|ref|YP_006922906.1|	-	0.01	15.8	2.9	0.87	9.5	0.1	3.3	3	0	0	3	3	3	0	NTPase
AAA_33	PF13671.6	gi|410670535|ref|YP_006922906.1|	-	0.011	15.9	0.6	6.6	6.9	0.0	2.8	3	0	0	3	3	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|410670535|ref|YP_006922906.1|	-	0.012	15.7	0.6	6.5	6.9	0.0	2.8	3	0	0	3	3	2	0	50S	ribosome-binding	GTPase
Pox_A32	PF04665.12	gi|410670535|ref|YP_006922906.1|	-	0.015	14.7	1.7	2.5	7.5	0.2	2.5	2	0	0	2	2	2	0	Poxvirus	A32	protein
AAA_28	PF13521.6	gi|410670535|ref|YP_006922906.1|	-	0.016	15.4	2.3	3.6	7.8	0.1	2.7	2	1	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|410670535|ref|YP_006922906.1|	-	0.021	15.2	1.1	23	5.4	0.0	3.6	4	0	0	4	4	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DLIC	PF05783.11	gi|410670535|ref|YP_006922906.1|	-	0.024	13.5	1.8	2.8	6.7	0.2	2.5	3	0	0	3	3	2	0	Dynein	light	intermediate	chain	(DLIC)
Roc	PF08477.13	gi|410670535|ref|YP_006922906.1|	-	0.024	14.8	0.4	3.5	7.8	0.0	2.5	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
ATPase	PF06745.13	gi|410670535|ref|YP_006922906.1|	-	0.028	13.8	2.6	5.4	6.3	0.1	3.2	3	0	0	3	3	3	0	KaiC
IstB_IS21	PF01695.17	gi|410670535|ref|YP_006922906.1|	-	0.035	13.8	0.2	2.2	8.0	0.0	3.0	3	0	0	3	3	3	0	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.21	gi|410670535|ref|YP_006922906.1|	-	0.038	13.4	0.0	4.2	6.7	0.0	2.3	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_14	PF13173.6	gi|410670535|ref|YP_006922906.1|	-	0.044	13.8	1.2	11	6.1	0.1	2.9	3	0	0	3	3	2	0	AAA	domain
dNK	PF01712.19	gi|410670535|ref|YP_006922906.1|	-	0.049	13.5	0.6	5.9	6.7	0.3	2.5	2	0	0	2	2	2	0	Deoxynucleoside	kinase
KAP_NTPase	PF07693.14	gi|410670535|ref|YP_006922906.1|	-	0.061	12.6	0.6	0.69	9.1	0.0	2.2	2	0	0	2	2	2	0	KAP	family	P-loop	domain
AAA_17	PF13207.6	gi|410670535|ref|YP_006922906.1|	-	0.063	13.7	1.2	13	6.2	0.0	3.3	3	0	0	3	3	3	0	AAA	domain
APS_kinase	PF01583.20	gi|410670535|ref|YP_006922906.1|	-	0.07	13.0	0.5	3.4	7.5	0.1	2.5	2	0	0	2	2	2	0	Adenylylsulphate	kinase
DUF87	PF01935.17	gi|410670535|ref|YP_006922906.1|	-	0.13	12.4	5.3	1.9	8.6	0.2	2.7	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
T2SSE	PF00437.20	gi|410670535|ref|YP_006922906.1|	-	0.17	10.9	0.8	1.1	8.2	0.1	2.3	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
AAA_19	PF13245.6	gi|410670535|ref|YP_006922906.1|	-	0.32	11.3	4.2	14	6.0	0.4	2.9	2	1	0	2	2	2	0	AAA	domain
TrwB_AAD_bind	PF10412.9	gi|410670535|ref|YP_006922906.1|	-	0.62	8.9	4.8	13	4.5	0.5	2.9	3	0	0	3	3	3	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
ABC_ATPase	PF09818.9	gi|410670535|ref|YP_006922906.1|	-	0.85	8.3	8.0	2.7	6.7	0.3	2.8	4	0	0	4	4	2	0	Predicted	ATPase	of	the	ABC	class
CbiA	PF01656.23	gi|410670535|ref|YP_006922906.1|	-	3.2	7.8	5.3	12	6.0	0.7	2.7	2	0	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Phasin	PF05597.11	gi|410670536|ref|YP_006922907.1|	-	2.5e-05	24.3	5.2	0.00015	21.7	5.2	1.9	1	1	0	1	1	1	1	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
PRESAN	PF09687.10	gi|410670536|ref|YP_006922907.1|	-	0.0005	20.6	2.6	0.00069	20.2	1.8	1.5	1	1	0	1	1	1	1	Plasmodium	RESA	N-terminal
BMFP	PF04380.13	gi|410670536|ref|YP_006922907.1|	-	0.0013	19.1	4.6	0.002	18.6	3.7	1.7	1	1	1	2	2	2	1	Membrane	fusogenic	activity
TSC22	PF01166.18	gi|410670536|ref|YP_006922907.1|	-	0.0041	17.4	5.8	0.076	13.3	0.3	2.5	2	0	0	2	2	2	2	TSC-22/dip/bun	family
NusB	PF01029.18	gi|410670536|ref|YP_006922907.1|	-	0.037	14.3	0.9	0.037	14.3	0.9	1.6	1	1	1	2	2	2	0	NusB	family
Ribosomal_S20p	PF01649.18	gi|410670536|ref|YP_006922907.1|	-	0.074	13.7	2.6	0.11	13.2	2.6	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S20
adh_short	PF00106.25	gi|410670536|ref|YP_006922907.1|	-	0.095	12.1	0.7	0.12	11.8	0.7	1.2	1	0	0	1	1	1	0	short	chain	dehydrogenase
DUF87	PF01935.17	gi|410670536|ref|YP_006922907.1|	-	0.12	12.4	3.9	0.14	12.2	3.9	1.0	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
DUF1664	PF07889.12	gi|410670536|ref|YP_006922907.1|	-	0.16	12.0	2.9	0.23	11.5	2.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
YtxH	PF12732.7	gi|410670536|ref|YP_006922907.1|	-	8.5	7.0	7.5	1.2e+02	3.3	7.5	2.2	1	1	0	1	1	1	0	YtxH-like	protein
DUF3303	PF11746.8	gi|410670538|ref|YP_006922909.1|	-	1.1e-08	35.2	0.0	1.3e-08	35.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3303)
NRD1_2	PF01995.16	gi|410670540|ref|YP_006922911.1|	-	1.2e-93	312.8	0.4	1.5e-93	312.4	0.4	1.1	1	0	0	1	1	1	1	NrpR	regulatory	domains	NRD1	and	2
HTH_12	PF08461.10	gi|410670540|ref|YP_006922911.1|	-	6e-30	103.0	2.7	8.3e-30	102.5	1.3	2.0	3	0	0	3	3	3	1	Ribonuclease	R	winged-helix	domain
N6_N4_Mtase	PF01555.18	gi|410670541|ref|YP_006922912.1|	-	4.3e-31	108.4	0.1	6.8e-31	107.8	0.1	1.3	1	0	0	1	1	1	1	DNA	methylase
MTS	PF05175.14	gi|410670541|ref|YP_006922912.1|	-	0.094	12.3	0.0	13	5.3	0.0	2.3	2	0	0	2	2	2	0	Methyltransferase	small	domain
Ammonium_transp	PF00909.21	gi|410670542|ref|YP_006922913.1|	-	4.6e-120	401.0	40.5	5.9e-120	400.6	40.5	1.1	1	0	0	1	1	1	1	Ammonium	Transporter	Family
XhlA	PF10779.9	gi|410670542|ref|YP_006922913.1|	-	0.31	11.3	0.1	0.31	11.3	0.1	2.1	2	0	0	2	2	2	0	Haemolysin	XhlA
DUF373	PF04123.13	gi|410670542|ref|YP_006922913.1|	-	2.8	7.3	24.0	1.4	8.3	5.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF373)
P-II	PF00543.22	gi|410670543|ref|YP_006922914.1|	-	1.2e-39	135.0	2.7	1.4e-39	134.8	2.7	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
HisG_C	PF08029.11	gi|410670543|ref|YP_006922914.1|	-	0.16	12.2	0.4	3.2	8.0	0.1	2.2	2	0	0	2	2	2	0	HisG,	C-terminal	domain
FMN_red	PF03358.15	gi|410670544|ref|YP_006922915.1|	-	6.1e-24	84.5	0.0	8.4e-24	84.1	0.0	1.2	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|410670544|ref|YP_006922915.1|	-	1e-11	45.0	0.0	1.4e-11	44.4	0.0	1.3	1	0	0	1	1	1	1	Flavodoxin-like	fold
Flavodoxin_5	PF12724.7	gi|410670544|ref|YP_006922915.1|	-	0.11	12.8	0.0	0.8	9.9	0.0	2.1	2	0	0	2	2	2	0	Flavodoxin	domain
Response_reg	PF00072.24	gi|410670545|ref|YP_006922916.1|	-	1.9e-27	95.6	1.4	3.3e-27	94.9	0.7	1.8	2	0	0	2	2	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|410670545|ref|YP_006922916.1|	-	2.1e-21	76.5	0.1	4.1e-21	75.6	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|410670545|ref|YP_006922916.1|	-	3.4e-08	33.7	0.1	5.6e-07	29.8	0.0	2.5	2	0	0	2	2	2	1	PAS	domain
PAS_4	PF08448.10	gi|410670545|ref|YP_006922916.1|	-	9.8e-07	29.0	0.0	1.7e-06	28.2	0.0	1.4	1	0	0	1	1	1	1	PAS	fold
HisKA	PF00512.25	gi|410670545|ref|YP_006922916.1|	-	7.8e-06	25.8	0.5	1.7e-05	24.8	0.5	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS	PF00989.25	gi|410670545|ref|YP_006922916.1|	-	0.00062	19.7	0.1	0.0027	17.7	0.0	2.2	2	1	0	2	2	2	1	PAS	fold
HATPase_c_2	PF13581.6	gi|410670545|ref|YP_006922916.1|	-	0.0008	19.4	0.0	0.0018	18.3	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_3	PF08447.12	gi|410670545|ref|YP_006922916.1|	-	0.0054	17.0	0.1	0.012	15.9	0.1	1.6	1	0	0	1	1	1	1	PAS	fold
HATPase_c_5	PF14501.6	gi|410670545|ref|YP_006922916.1|	-	0.016	15.1	0.0	0.043	13.7	0.0	1.7	1	0	0	1	1	1	0	GHKL	domain
HATPase_c_3	PF13589.6	gi|410670545|ref|YP_006922916.1|	-	0.036	13.9	0.1	0.08	12.8	0.1	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.7	gi|410670545|ref|YP_006922916.1|	-	0.04	13.9	0.0	0.12	12.4	0.0	1.8	1	0	0	1	1	1	0	PAS	domain
SPOB_a	PF14689.6	gi|410670545|ref|YP_006922916.1|	-	0.059	13.1	0.2	0.18	11.5	0.2	1.8	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
Latarcin	PF10279.9	gi|410670545|ref|YP_006922916.1|	-	0.5	10.8	3.2	3.9	8.0	3.2	2.2	1	1	0	1	1	1	0	Latarcin	precursor
Fer4_NifH	PF00142.18	gi|410670546|ref|YP_006922917.1|	-	4e-113	377.3	0.6	4.5e-113	377.2	0.6	1.0	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CbiA	PF01656.23	gi|410670546|ref|YP_006922917.1|	-	0.0016	18.5	0.0	0.0026	17.8	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
P-II	PF00543.22	gi|410670547|ref|YP_006922918.1|	-	2e-31	108.6	1.1	2.2e-31	108.4	1.1	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
CdAMP_rec	PF06153.11	gi|410670547|ref|YP_006922918.1|	-	0.02	15.1	0.2	0.27	11.4	0.2	2.1	1	1	0	1	1	1	0	Cyclic-di-AMP	receptor
P-II	PF00543.22	gi|410670548|ref|YP_006922919.1|	-	4.3e-28	97.9	0.0	5.5e-28	97.6	0.0	1.1	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
Oxidored_nitro	PF00148.19	gi|410670549|ref|YP_006922920.1|	-	1.2e-132	442.5	0.2	2.3e-132	441.5	0.2	1.5	1	1	0	1	1	1	1	Nitrogenase	component	1	type	Oxidoreductase
DUF5612	PF18462.1	gi|410670549|ref|YP_006922920.1|	-	0.067	13.0	0.1	0.22	11.3	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5612)
2-Hacid_dh_C	PF02826.19	gi|410670549|ref|YP_006922920.1|	-	0.13	11.6	0.0	0.23	10.8	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Oxidored_nitro	PF00148.19	gi|410670550|ref|YP_006922921.1|	-	4.9e-123	410.8	0.1	5.5e-123	410.6	0.1	1.0	1	0	0	1	1	1	1	Nitrogenase	component	1	type	Oxidoreductase
Oxidored_nitro	PF00148.19	gi|410670551|ref|YP_006922922.1|	-	4.8e-116	387.8	0.2	5.6e-116	387.5	0.2	1.0	1	0	0	1	1	1	1	Nitrogenase	component	1	type	Oxidoreductase
Glyco_transf_4	PF13439.6	gi|410670551|ref|YP_006922922.1|	-	0.044	13.8	0.0	0.15	12.0	0.0	1.9	2	0	0	2	2	2	0	Glycosyltransferase	Family	4
CBP4	PF07960.11	gi|410670551|ref|YP_006922922.1|	-	0.83	9.5	3.1	0.29	11.0	0.2	1.7	2	0	0	2	2	2	0	CBP4
Oxidored_nitro	PF00148.19	gi|410670552|ref|YP_006922923.1|	-	7.2e-125	416.8	0.0	8.1e-125	416.7	0.0	1.0	1	0	0	1	1	1	1	Nitrogenase	component	1	type	Oxidoreductase
Nitroreductase	PF00881.24	gi|410670553|ref|YP_006922924.1|	-	9.7e-35	120.1	0.0	1.2e-34	119.9	0.0	1.1	1	0	0	1	1	1	1	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|410670553|ref|YP_006922924.1|	-	1.5e-12	47.5	0.6	0.00016	21.4	0.0	3.1	1	1	2	3	3	3	3	Putative	TM	nitroreductase
FeThRed_B	PF02943.15	gi|410670554|ref|YP_006922925.1|	-	3.4e-33	113.8	1.0	3.9e-33	113.6	1.0	1.0	1	0	0	1	1	1	1	Ferredoxin	thioredoxin	reductase	catalytic	beta	chain
Glutaredoxin	PF00462.24	gi|410670555|ref|YP_006922926.1|	-	4.2e-07	30.1	0.3	6.8e-07	29.4	0.3	1.4	1	0	0	1	1	1	1	Glutaredoxin
GST_N_3	PF13417.6	gi|410670555|ref|YP_006922926.1|	-	0.028	14.8	0.0	0.054	13.9	0.0	1.5	1	0	0	1	1	1	0	Glutathione	S-transferase,	N-terminal	domain
DUF1122	PF06557.11	gi|410670555|ref|YP_006922926.1|	-	0.032	13.6	0.0	0.042	13.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1122)
LacI	PF00356.21	gi|410670555|ref|YP_006922926.1|	-	0.044	13.6	0.0	0.84	9.5	0.0	2.3	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
DUF1450	PF07293.11	gi|410670555|ref|YP_006922926.1|	-	0.077	12.8	0.1	0.13	12.1	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1450)
Glutaredoxin	PF00462.24	gi|410670556|ref|YP_006922927.1|	-	2.1e-11	43.8	0.1	2.8e-11	43.5	0.1	1.2	1	0	0	1	1	1	1	Glutaredoxin
GST_N_3	PF13417.6	gi|410670556|ref|YP_006922927.1|	-	2.9e-05	24.4	0.0	3.1e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N_2	PF13409.6	gi|410670556|ref|YP_006922927.1|	-	0.0028	17.9	0.0	0.0028	17.9	0.0	1.2	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF1462	PF07315.11	gi|410670556|ref|YP_006922927.1|	-	0.015	15.6	0.0	0.018	15.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1462)
Rieske	PF00355.26	gi|410670557|ref|YP_006922928.1|	-	4.6e-19	68.2	0.0	5.2e-19	68.0	0.0	1.2	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|410670557|ref|YP_006922928.1|	-	7.9e-16	57.9	0.0	9e-16	57.7	0.0	1.0	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
zf-CSL	PF05207.13	gi|410670557|ref|YP_006922928.1|	-	0.11	12.3	0.5	0.73	9.6	0.2	2.1	1	1	1	2	2	2	0	CSL	zinc	finger
Rieske	PF00355.26	gi|410670558|ref|YP_006922929.1|	-	4.1e-17	61.9	0.1	4.7e-17	61.7	0.1	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|410670558|ref|YP_006922929.1|	-	1e-05	25.4	0.0	1.2e-05	25.1	0.0	1.1	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
MatE	PF01554.18	gi|410670559|ref|YP_006922930.1|	-	1.2e-50	171.3	36.4	1.6e-25	89.6	16.5	2.3	2	0	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|410670559|ref|YP_006922930.1|	-	2e-11	44.1	27.1	1.9e-08	34.5	16.1	4.2	4	1	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
DUF4249	PF14054.6	gi|410670559|ref|YP_006922930.1|	-	0.21	11.2	0.0	0.31	10.6	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4249)
MarR	PF01047.22	gi|410670560|ref|YP_006922931.1|	-	1.7e-15	56.7	0.0	3.4e-15	55.7	0.0	1.5	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|410670560|ref|YP_006922931.1|	-	2.1e-09	37.1	0.1	3.9e-09	36.3	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|410670560|ref|YP_006922931.1|	-	5.7e-07	29.9	0.0	9.2e-07	29.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|410670560|ref|YP_006922931.1|	-	2.4e-06	27.0	0.2	7.3e-06	25.5	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|410670560|ref|YP_006922931.1|	-	1e-05	25.4	0.1	1.8e-05	24.6	0.1	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|410670560|ref|YP_006922931.1|	-	0.00051	19.9	0.0	0.04	13.8	0.0	2.2	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_36	PF13730.6	gi|410670560|ref|YP_006922931.1|	-	0.0017	18.3	0.0	0.0031	17.4	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|410670560|ref|YP_006922931.1|	-	0.0051	16.6	0.1	0.0093	15.8	0.1	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|410670560|ref|YP_006922931.1|	-	0.0072	16.5	0.0	0.012	15.8	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.12	gi|410670560|ref|YP_006922931.1|	-	0.0076	16.2	0.1	0.014	15.3	0.1	1.5	1	0	0	1	1	1	1	HTH	domain
Sigma70_r4_2	PF08281.12	gi|410670560|ref|YP_006922931.1|	-	0.0085	15.7	0.0	0.022	14.4	0.0	1.7	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_DeoR	PF08220.12	gi|410670560|ref|YP_006922931.1|	-	0.021	14.6	0.0	0.068	12.9	0.1	1.8	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
GntR	PF00392.21	gi|410670560|ref|YP_006922931.1|	-	0.028	14.1	0.1	0.051	13.2	0.1	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HxlR	PF01638.17	gi|410670560|ref|YP_006922931.1|	-	0.065	13.1	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_20	PF12840.7	gi|410670560|ref|YP_006922931.1|	-	0.12	12.4	0.1	0.27	11.3	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|410670560|ref|YP_006922931.1|	-	0.13	12.2	0.1	0.25	11.3	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Importin_rep	PF18773.1	gi|410670560|ref|YP_006922931.1|	-	5.3	6.8	5.6	19	5.0	2.1	2.3	2	0	0	2	2	2	0	Importin	13	repeat
Transglut_core	PF01841.19	gi|410670561|ref|YP_006922932.1|	-	0.0061	17.0	0.1	0.02	15.3	0.1	1.9	1	1	0	1	1	1	1	Transglutaminase-like	superfamily
MacB_PCD	PF12704.7	gi|410670562|ref|YP_006922933.1|	-	2.5e-28	99.8	4.2	2.5e-28	99.8	4.2	2.5	3	1	0	4	4	4	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|410670562|ref|YP_006922933.1|	-	6.6e-17	61.8	17.0	6.8e-17	61.7	6.2	3.1	3	0	0	3	3	3	2	FtsX-like	permease	family
NADH-u_ox-rdase	PF10785.9	gi|410670562|ref|YP_006922933.1|	-	2.4	8.9	5.1	1.3	9.8	0.1	2.8	2	1	1	3	3	3	0	NADH-ubiquinone	oxidoreductase	complex	I,	21	kDa	subunit
Pam17	PF08566.10	gi|410670562|ref|YP_006922933.1|	-	5.8	6.7	5.3	6.5	6.6	0.1	2.7	3	0	0	3	3	3	0	Mitochondrial	import	protein	Pam17
NPCBM_assoc	PF10633.9	gi|410670563|ref|YP_006922934.1|	-	1.7e-08	34.6	11.7	0.0076	16.5	0.0	4.9	4	2	0	4	4	4	3	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.11	gi|410670563|ref|YP_006922934.1|	-	0.00068	19.9	17.1	0.43	10.9	0.1	4.3	2	1	2	4	4	4	3	CARDB
Glyco_hydro_66	PF13199.6	gi|410670563|ref|YP_006922934.1|	-	0.0099	14.6	1.2	0.015	14.0	1.2	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	66
DUF11	PF01345.18	gi|410670563|ref|YP_006922934.1|	-	0.01	16.2	17.2	0.027	14.7	5.6	4.3	2	2	0	2	2	2	1	Domain	of	unknown	function	DUF11
Gram_pos_anchor	PF00746.21	gi|410670563|ref|YP_006922934.1|	-	0.023	14.7	0.2	0.072	13.0	0.2	1.8	1	0	0	1	1	1	0	LPXTG	cell	wall	anchor	motif
DUF4998	PF16389.5	gi|410670563|ref|YP_006922934.1|	-	0.042	13.4	5.0	0.55	9.8	0.6	2.7	2	2	0	2	2	2	0	Domain	of	unknown	function
DUF150_C	PF17384.2	gi|410670563|ref|YP_006922934.1|	-	0.77	9.9	2.4	0.9	9.7	0.2	2.4	3	0	0	3	3	3	0	RimP	C-terminal	SH3	domain
ABC_tran	PF00005.27	gi|410670565|ref|YP_006922936.1|	-	1.9e-33	115.9	0.0	3.3e-33	115.1	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|410670565|ref|YP_006922936.1|	-	3.4e-08	33.2	0.2	2.4e-07	30.4	0.2	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|410670565|ref|YP_006922936.1|	-	5.5e-07	29.7	0.6	0.012	15.5	0.2	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|410670565|ref|YP_006922936.1|	-	4.3e-05	23.2	0.0	7.8e-05	22.3	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|410670565|ref|YP_006922936.1|	-	0.00019	21.3	0.0	0.0003	20.7	0.0	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA_16	PF13191.6	gi|410670565|ref|YP_006922936.1|	-	0.00054	20.4	0.0	0.0011	19.4	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|410670565|ref|YP_006922936.1|	-	0.00076	20.0	0.1	0.0018	18.8	0.1	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|410670565|ref|YP_006922936.1|	-	0.0021	18.3	0.1	0.061	13.6	0.1	2.2	2	0	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.17	gi|410670565|ref|YP_006922936.1|	-	0.0062	16.3	0.0	0.16	11.6	0.0	2.1	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|410670565|ref|YP_006922936.1|	-	0.0097	16.5	0.1	0.32	11.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
ATPase_2	PF01637.18	gi|410670565|ref|YP_006922936.1|	-	0.013	15.5	0.1	0.042	13.8	0.0	1.7	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_30	PF13604.6	gi|410670565|ref|YP_006922936.1|	-	0.021	14.5	0.0	0.11	12.2	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|410670565|ref|YP_006922936.1|	-	0.028	14.5	0.0	0.098	12.7	0.0	1.9	2	1	1	3	3	3	0	AAA	domain
NTPase_1	PF03266.15	gi|410670565|ref|YP_006922936.1|	-	0.033	14.1	0.3	7.6	6.4	0.0	2.2	2	0	0	2	2	2	0	NTPase
MMR_HSR1	PF01926.23	gi|410670565|ref|YP_006922936.1|	-	0.049	13.7	0.7	0.099	12.7	0.7	1.9	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_13	PF13166.6	gi|410670565|ref|YP_006922936.1|	-	0.053	12.2	0.3	4	5.9	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
RNA12	PF10443.9	gi|410670565|ref|YP_006922936.1|	-	0.075	11.8	0.0	0.11	11.1	0.0	1.2	1	0	0	1	1	1	0	RNA12	protein
G-alpha	PF00503.20	gi|410670565|ref|YP_006922936.1|	-	0.084	12.0	0.0	0.087	12.0	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
AAA_25	PF13481.6	gi|410670565|ref|YP_006922936.1|	-	0.14	11.7	0.0	0.31	10.6	0.0	1.5	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|410670565|ref|YP_006922936.1|	-	0.15	12.5	0.0	0.35	11.3	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
AAA_28	PF13521.6	gi|410670565|ref|YP_006922936.1|	-	0.19	12.0	0.0	0.34	11.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Rho_RNA_bind	PF07497.12	gi|410670566|ref|YP_006922937.1|	-	0.099	12.5	0.0	0.1	12.5	0.0	1.1	1	0	0	1	1	1	0	Rho	termination	factor,	RNA-binding	domain
ID	PF18543.1	gi|410670566|ref|YP_006922937.1|	-	0.12	12.4	0.0	0.15	12.1	0.0	1.1	1	0	0	1	1	1	0	Intracellular	delivery	domain
HTH_24	PF13412.6	gi|410670567|ref|YP_006922938.1|	-	0.00026	20.5	0.7	0.00046	19.7	0.7	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|410670567|ref|YP_006922938.1|	-	0.0072	16.2	0.1	0.015	15.2	0.1	1.4	1	0	0	1	1	1	1	MarR	family
CarbopepD_reg_2	PF13715.6	gi|410670567|ref|YP_006922938.1|	-	0.11	12.5	0.1	0.21	11.6	0.1	1.5	1	0	0	1	1	1	0	CarboxypepD_reg-like	domain
Lipoprotein_22	PF17294.2	gi|410670567|ref|YP_006922938.1|	-	0.14	11.8	0.0	0.25	11.0	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	lipoprotein	family
FeoC	PF09012.10	gi|410670567|ref|YP_006922938.1|	-	0.19	11.9	0.2	0.32	11.1	0.2	1.3	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
CdiI_2	PF18593.1	gi|410670568|ref|YP_006922939.1|	-	0.066	13.9	0.4	0.14	12.9	0.4	1.4	1	0	0	1	1	1	0	CdiI	immunity	protein
FAT	PF02259.23	gi|410670571|ref|YP_006922942.1|	-	0.023	13.9	0.3	0.029	13.6	0.3	1.2	1	0	0	1	1	1	0	FAT	domain
CopG_antitoxin	PF12441.8	gi|410670571|ref|YP_006922942.1|	-	0.04	14.5	9.4	1.9	9.1	1.3	3.2	2	2	0	2	2	2	0	CopG	antitoxin	of	type	II	toxin-antitoxin	system
Mit_KHE1	PF10173.9	gi|410670571|ref|YP_006922942.1|	-	0.05	13.7	1.3	0.11	12.6	1.3	1.5	1	0	0	1	1	1	0	Mitochondrial	K+-H+	exchange-related
HTH_WhiA	PF02650.14	gi|410670571|ref|YP_006922942.1|	-	0.19	12.1	10.5	0.21	11.9	3.1	2.7	2	1	0	2	2	2	0	WhiA	C-terminal	HTH	domain
Rif1_N	PF12231.8	gi|410670571|ref|YP_006922942.1|	-	0.26	10.3	1.9	0.24	10.4	0.2	1.7	2	0	0	2	2	2	0	Rap1-interacting	factor	1	N	terminal
Sarcoglycan_1	PF04790.13	gi|410670571|ref|YP_006922942.1|	-	0.8	9.0	4.0	1.3	8.3	4.0	1.3	1	0	0	1	1	1	0	Sarcoglycan	complex	subunit	protein
Cas_Cas1	PF01867.16	gi|410670571|ref|YP_006922942.1|	-	0.96	8.5	7.3	1	8.5	1.1	2.1	2	0	0	2	2	2	0	CRISPR	associated	protein	Cas1
DUF1993	PF09351.10	gi|410670571|ref|YP_006922942.1|	-	2.2	8.4	7.9	3	8.0	0.8	2.6	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1993)
Aida_N	PF08910.10	gi|410670571|ref|YP_006922942.1|	-	2.3	8.7	5.4	7.2	7.1	0.2	2.9	2	2	0	2	2	2	0	Aida	N-terminus
Fib_alpha	PF08702.10	gi|410670571|ref|YP_006922942.1|	-	3.7	7.7	8.5	1.5	9.0	0.5	2.5	2	1	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Gln-synt_C	PF00120.24	gi|410670574|ref|YP_006922945.1|	-	9.9e-129	429.2	0.0	1.2e-128	429.0	0.0	1.0	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.19	gi|410670574|ref|YP_006922945.1|	-	2.9e-32	110.2	0.1	6e-32	109.2	0.1	1.6	1	0	0	1	1	1	1	Glutamine	synthetase,	beta-Grasp	domain
Gln-synt_N_2	PF16952.5	gi|410670574|ref|YP_006922945.1|	-	0.017	14.9	0.0	0.051	13.4	0.0	1.8	1	1	0	1	1	1	0	Glutamine	synthetase	N-terminal	domain
Acetyltransf_1	PF00583.25	gi|410670575|ref|YP_006922946.1|	-	4.2e-18	65.7	0.0	5.2e-18	65.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|410670575|ref|YP_006922946.1|	-	7.1e-11	42.1	0.0	9.9e-11	41.7	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|410670575|ref|YP_006922946.1|	-	1.9e-10	41.0	0.0	2.7e-10	40.5	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|410670575|ref|YP_006922946.1|	-	1.4e-07	31.7	0.0	2.4e-07	31.0	0.0	1.3	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|410670575|ref|YP_006922946.1|	-	4.3e-07	29.8	0.0	7.8e-07	29.0	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|410670575|ref|YP_006922946.1|	-	1.1e-05	25.6	0.0	7.3e-05	22.8	0.0	2.1	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|410670575|ref|YP_006922946.1|	-	0.00018	22.2	0.0	0.00022	21.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
GNAT_acetyltran	PF12746.7	gi|410670575|ref|YP_006922946.1|	-	0.025	14.1	0.0	0.038	13.5	0.0	1.2	1	0	0	1	1	1	0	GNAT	acetyltransferase
Gly_acyl_tr_C	PF08444.10	gi|410670575|ref|YP_006922946.1|	-	0.099	12.9	0.0	0.16	12.2	0.0	1.3	1	0	0	1	1	1	0	Aralkyl	acyl-CoA:amino	acid	N-acyltransferase,	C-terminal	region
FrhB_FdhB_C	PF04432.13	gi|410670576|ref|YP_006922947.1|	-	9.1e-35	119.8	0.0	1.5e-34	119.0	0.0	1.4	1	0	0	1	1	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	C	terminus
FrhB_FdhB_N	PF04422.13	gi|410670576|ref|YP_006922947.1|	-	4.3e-19	68.4	0.1	7.1e-19	67.7	0.1	1.4	1	0	0	1	1	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	N-term
Fer4	PF00037.27	gi|410670576|ref|YP_006922947.1|	-	3.7e-06	26.5	4.3	3.7e-06	26.5	4.3	3.3	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|410670576|ref|YP_006922947.1|	-	4e-06	26.8	9.1	4e-06	26.8	9.1	1.9	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|410670576|ref|YP_006922947.1|	-	9.8e-06	26.1	9.4	9.8e-06	26.1	9.4	2.2	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410670576|ref|YP_006922947.1|	-	2.5e-05	24.4	23.0	0.00061	19.9	11.9	2.8	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410670576|ref|YP_006922947.1|	-	6.5e-05	22.8	3.7	6.5e-05	22.8	3.7	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|410670576|ref|YP_006922947.1|	-	0.0018	18.3	3.9	0.0018	18.3	3.9	3.4	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|410670576|ref|YP_006922947.1|	-	0.0037	18.2	17.0	0.025	15.5	4.8	3.3	2	1	1	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_13	PF13370.6	gi|410670576|ref|YP_006922947.1|	-	0.0079	16.7	6.7	0.28	11.7	1.4	3.0	3	0	0	3	3	2	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_4	PF12800.7	gi|410670576|ref|YP_006922947.1|	-	0.0088	16.5	17.1	0.012	16.1	2.2	3.3	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|410670576|ref|YP_006922947.1|	-	0.054	13.7	13.3	0.083	13.1	1.9	3.2	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410670576|ref|YP_006922947.1|	-	0.16	12.1	17.5	0.46	10.6	12.7	3.1	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|410670576|ref|YP_006922947.1|	-	0.17	12.9	19.0	3.1	9.0	3.2	2.8	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|410670576|ref|YP_006922947.1|	-	1.3	9.5	16.7	0.39	11.2	3.6	2.6	2	1	2	4	4	3	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410670576|ref|YP_006922947.1|	-	3.9	8.1	16.1	0.26	11.9	2.8	2.8	2	1	2	4	4	4	0	4Fe-4S	dicluster	domain
GXGXG	PF01493.19	gi|410670577|ref|YP_006922948.1|	-	3.8e-35	121.2	9.9	4.6e-35	120.9	9.9	1.1	1	0	0	1	1	1	1	GXGXG	motif
Glu_synthase	PF01645.17	gi|410670578|ref|YP_006922949.1|	-	2.3e-136	454.8	0.0	3.8e-136	454.0	0.0	1.3	1	0	0	1	1	1	1	Conserved	region	in	glutamate	synthase
Glu_syn_central	PF04898.14	gi|410670578|ref|YP_006922949.1|	-	6.8e-15	55.3	0.1	2.1e-07	30.7	0.1	2.4	2	1	0	2	2	2	2	Glutamate	synthase	central	domain
FMN_dh	PF01070.18	gi|410670578|ref|YP_006922949.1|	-	6.8e-10	38.5	5.8	2.3e-07	30.2	2.4	3.1	3	0	0	3	3	3	2	FMN-dependent	dehydrogenase
IMPDH	PF00478.25	gi|410670578|ref|YP_006922949.1|	-	5.4e-09	35.5	8.1	1.1e-06	27.9	7.3	3.0	2	1	0	2	2	2	1	IMP	dehydrogenase	/	GMP	reductase	domain
Fer4_7	PF12838.7	gi|410670578|ref|YP_006922949.1|	-	6.5e-09	36.3	15.2	5.3e-07	30.1	11.2	2.8	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
NMO	PF03060.15	gi|410670578|ref|YP_006922949.1|	-	8.4e-09	35.3	1.7	7.5e-08	32.1	2.5	2.0	2	0	0	2	2	2	1	Nitronate	monooxygenase
Fer4_10	PF13237.6	gi|410670578|ref|YP_006922949.1|	-	1.2e-08	35.0	17.6	4.1e-05	23.6	14.1	3.1	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|410670578|ref|YP_006922949.1|	-	4.4e-08	32.6	19.5	5.7e-06	25.9	0.9	3.5	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|410670578|ref|YP_006922949.1|	-	1.3e-07	31.7	16.0	1.3e-06	28.4	11.6	2.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410670578|ref|YP_006922949.1|	-	2.1e-07	31.8	9.8	4.1e-05	24.4	0.2	3.4	3	0	0	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_6	PF12837.7	gi|410670578|ref|YP_006922949.1|	-	5.6e-06	26.2	23.7	4.9e-05	23.2	2.5	3.4	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410670578|ref|YP_006922949.1|	-	5.7e-06	26.4	10.6	5.7e-06	26.4	10.6	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410670578|ref|YP_006922949.1|	-	3.1e-05	24.4	8.7	0.094	13.3	0.3	3.4	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410670578|ref|YP_006922949.1|	-	3.3e-05	23.7	20.7	0.0032	17.5	2.1	3.6	3	0	0	3	3	3	2	4Fe-4S	binding	domain
His_biosynth	PF00977.21	gi|410670578|ref|YP_006922949.1|	-	0.002	17.6	0.3	0.0067	15.9	0.2	1.8	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
DHO_dh	PF01180.21	gi|410670578|ref|YP_006922949.1|	-	0.0051	16.1	2.7	0.038	13.2	2.7	2.0	1	1	0	1	1	1	1	Dihydroorotate	dehydrogenase
Fer4_8	PF13183.6	gi|410670578|ref|YP_006922949.1|	-	0.03	14.8	17.7	0.33	11.4	2.4	3.3	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410670578|ref|YP_006922949.1|	-	0.71	10.5	21.0	1.7	9.4	2.1	3.5	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|410670578|ref|YP_006922949.1|	-	0.79	10.5	16.0	0.32	11.8	2.3	3.2	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|410670578|ref|YP_006922949.1|	-	2.8	8.9	13.3	2.3	9.1	0.7	3.1	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
GATase_6	PF13522.6	gi|410670579|ref|YP_006922950.1|	-	2e-13	50.7	0.0	1.6e-10	41.3	0.0	2.2	2	0	0	2	2	2	2	Glutamine	amidotransferase	domain
GATase_2	PF00310.21	gi|410670579|ref|YP_006922950.1|	-	4.9e-09	35.4	0.1	1.1e-07	31.0	0.1	2.1	1	1	0	1	1	1	1	Glutamine	amidotransferases	class-II
GATase_7	PF13537.6	gi|410670579|ref|YP_006922950.1|	-	6.7e-09	35.7	0.0	0.00055	19.8	0.0	2.3	2	0	0	2	2	2	2	Glutamine	amidotransferase	domain
Gln-synt_C	PF00120.24	gi|410670580|ref|YP_006922951.1|	-	9.2e-136	452.4	0.0	1.1e-135	452.1	0.0	1.0	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.19	gi|410670580|ref|YP_006922951.1|	-	5.8e-31	106.1	0.0	1.4e-30	104.8	0.0	1.7	1	0	0	1	1	1	1	Glutamine	synthetase,	beta-Grasp	domain
Gln-synt_N_2	PF16952.5	gi|410670580|ref|YP_006922951.1|	-	0.0018	18.1	0.0	0.015	15.1	0.0	2.3	1	1	0	1	1	1	1	Glutamine	synthetase	N-terminal	domain
Bmp	PF02608.14	gi|410670580|ref|YP_006922951.1|	-	0.0033	16.4	0.1	0.0051	15.8	0.1	1.2	1	0	0	1	1	1	1	ABC	transporter	substrate-binding	protein	PnrA-like
Fer4_8	PF13183.6	gi|410670581|ref|YP_006922952.1|	-	1.8e-11	44.3	9.2	3.4e-11	43.4	9.2	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410670581|ref|YP_006922952.1|	-	1.6e-08	34.9	9.4	2.5e-08	34.3	9.4	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410670581|ref|YP_006922952.1|	-	2.6e-08	33.8	11.6	4.2e-08	33.2	11.6	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410670581|ref|YP_006922952.1|	-	7.6e-07	29.2	12.1	7.7e-07	29.2	10.8	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|410670581|ref|YP_006922952.1|	-	2.6e-06	27.9	13.0	2.9e-06	27.8	11.5	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410670581|ref|YP_006922952.1|	-	6.9e-05	22.9	9.3	0.00013	22.1	9.3	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|410670581|ref|YP_006922952.1|	-	0.00053	19.7	15.6	0.033	14.0	5.5	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|410670581|ref|YP_006922952.1|	-	0.00077	19.4	14.0	0.022	14.8	5.3	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_20	PF14691.6	gi|410670581|ref|YP_006922952.1|	-	0.02	14.6	6.8	0.48	10.2	0.3	2.2	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_18	PF13746.6	gi|410670581|ref|YP_006922952.1|	-	0.022	14.9	1.0	0.022	14.9	1.0	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410670581|ref|YP_006922952.1|	-	0.052	14.5	15.1	0.6	11.1	13.8	2.3	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_3	PF12798.7	gi|410670581|ref|YP_006922952.1|	-	0.54	11.3	17.4	0.36	11.9	2.7	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|410670581|ref|YP_006922952.1|	-	2.2	9.2	13.3	1.5	9.7	1.0	2.4	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410670581|ref|YP_006922952.1|	-	5.4	7.3	11.8	1.2	9.3	1.1	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|410670581|ref|YP_006922952.1|	-	5.6	7.7	15.8	1.1	10.0	5.4	2.7	2	1	0	2	2	2	0	4Fe-4S	binding	domain
CCG	PF02754.16	gi|410670582|ref|YP_006922953.1|	-	8.3e-35	118.9	2.9	1.4e-19	70.1	0.3	2.2	2	0	0	2	2	2	2	Cysteine-rich	domain
Acetyltransf_1	PF00583.25	gi|410670583|ref|YP_006922954.1|	-	9e-16	58.2	0.0	1.1e-15	57.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|410670583|ref|YP_006922954.1|	-	9.7e-16	57.9	0.0	1.2e-15	57.6	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|410670583|ref|YP_006922954.1|	-	5.5e-15	55.6	0.0	7.7e-15	55.1	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|410670583|ref|YP_006922954.1|	-	3.5e-08	33.7	0.1	1.6e-07	31.6	0.1	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|410670583|ref|YP_006922954.1|	-	8.5e-08	32.3	0.0	4.3e-07	30.1	0.0	1.9	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|410670583|ref|YP_006922954.1|	-	2.8e-06	27.4	0.0	3.9e-06	26.9	0.0	1.2	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_6	PF13480.7	gi|410670583|ref|YP_006922954.1|	-	0.011	15.9	0.0	0.014	15.6	0.0	1.1	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|410670583|ref|YP_006922954.1|	-	0.016	15.9	0.0	0.021	15.5	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
PanZ	PF12568.8	gi|410670583|ref|YP_006922954.1|	-	0.17	11.6	0.0	0.2	11.4	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain,	PanZ
FR47	PF08445.10	gi|410670583|ref|YP_006922954.1|	-	0.19	11.7	0.0	0.36	10.8	0.0	1.5	1	1	0	1	1	1	0	FR47-like	protein
Acetyltransf_10	PF13673.7	gi|410670584|ref|YP_006922955.1|	-	4.8e-13	49.1	0.0	6.1e-13	48.8	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|410670584|ref|YP_006922955.1|	-	5.4e-12	46.0	0.1	6.8e-12	45.7	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|410670584|ref|YP_006922955.1|	-	7.3e-12	45.5	0.1	1e-11	45.0	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|410670584|ref|YP_006922955.1|	-	1.3e-05	25.2	0.0	2.3e-05	24.5	0.0	1.3	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
PanZ	PF12568.8	gi|410670584|ref|YP_006922955.1|	-	0.00072	19.3	0.0	0.00083	19.1	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain,	PanZ
Acetyltransf_13	PF13880.6	gi|410670584|ref|YP_006922955.1|	-	0.001	19.0	0.0	0.0017	18.3	0.0	1.3	1	0	0	1	1	1	1	ESCO1/2	acetyl-transferase
FR47	PF08445.10	gi|410670584|ref|YP_006922955.1|	-	0.005	16.8	0.0	0.0083	16.1	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_15	PF17013.5	gi|410670584|ref|YP_006922955.1|	-	0.015	14.8	0.0	0.019	14.5	0.0	1.3	1	0	0	1	1	1	0	Putative	acetyl-transferase
Acetyltransf_3	PF13302.7	gi|410670584|ref|YP_006922955.1|	-	0.04	14.6	0.0	0.046	14.4	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Peptidase_M20	PF01546.28	gi|410670585|ref|YP_006922956.1|	-	1.1e-29	103.6	0.0	1.3e-29	103.4	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|410670585|ref|YP_006922956.1|	-	5.1e-08	32.8	0.0	9.6e-08	31.9	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|410670585|ref|YP_006922956.1|	-	0.044	13.5	0.0	0.11	12.2	0.0	1.6	2	0	0	2	2	2	0	Peptidase	family	M28
NTP_transf_2	PF01909.23	gi|410670586|ref|YP_006922957.1|	-	3.4e-06	27.2	0.0	7.8e-06	26.1	0.0	1.6	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|410670586|ref|YP_006922957.1|	-	0.039	14.0	0.0	0.1	12.7	0.0	1.7	1	0	0	1	1	1	0	Polymerase	beta,	Nucleotidyltransferase
DUF2098	PF09871.9	gi|410670587|ref|YP_006922958.1|	-	7.6e-22	77.5	0.5	8.9e-22	77.2	0.5	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2098)
GCHY-1	PF02649.14	gi|410670588|ref|YP_006922959.1|	-	2.8e-82	276.1	6.6	3.2e-82	275.9	6.6	1.0	1	0	0	1	1	1	1	Type	I	GTP	cyclohydrolase	folE2
CDC37_C	PF08564.10	gi|410670588|ref|YP_006922959.1|	-	0.058	13.5	0.5	0.21	11.7	0.0	2.1	2	0	0	2	2	2	0	Cdc37	C	terminal	domain
MC1	PF05854.11	gi|410670589|ref|YP_006922960.1|	-	2.2e-41	140.0	1.5	2.6e-41	139.8	1.5	1.0	1	0	0	1	1	1	1	Non-histone	chromosomal	protein	MC1
AA_kinase	PF00696.28	gi|410670590|ref|YP_006922961.1|	-	1.6e-45	155.6	3.6	1.8e-45	155.4	3.6	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
Phage_TAC_11	PF11836.8	gi|410670590|ref|YP_006922961.1|	-	0.071	13.2	0.0	0.17	12.1	0.0	1.6	1	0	0	1	1	1	0	Phage	tail	tube	protein,	GTA-gp10
Radical_SAM	PF04055.21	gi|410670591|ref|YP_006922962.1|	-	3.9e-05	24.1	0.0	8.7e-05	23.0	0.0	1.6	2	0	0	2	2	2	1	Radical	SAM	superfamily
Churchill	PF06573.11	gi|410670591|ref|YP_006922962.1|	-	0.0073	16.6	0.1	0.3	11.4	0.0	2.3	2	0	0	2	2	2	1	Churchill	protein
Radical_SAM_C	PF16199.5	gi|410670591|ref|YP_006922962.1|	-	0.089	12.8	0.0	0.57	10.3	0.0	2.0	2	0	0	2	2	2	0	Radical_SAM	C-terminal	domain
Rubredoxin	PF00301.20	gi|410670591|ref|YP_006922962.1|	-	0.22	11.6	0.3	0.22	11.6	0.3	1.7	2	0	0	2	2	2	0	Rubredoxin
UPF0547	PF10571.9	gi|410670591|ref|YP_006922962.1|	-	0.47	10.6	2.9	9.1	6.5	0.1	2.6	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
GMP_synt_C	PF00958.22	gi|410670592|ref|YP_006922963.1|	-	2.1e-28	98.2	0.1	6.3e-28	96.7	0.0	1.8	1	1	1	2	2	2	1	GMP	synthase	C	terminal	domain
NAD_synthase	PF02540.17	gi|410670592|ref|YP_006922963.1|	-	2.7e-10	39.8	0.1	2.6e-09	36.6	0.1	2.0	1	1	0	1	1	1	1	NAD	synthase
QueC	PF06508.13	gi|410670592|ref|YP_006922963.1|	-	4.7e-05	23.0	0.0	0.00045	19.8	0.0	2.0	1	1	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.16	gi|410670592|ref|YP_006922963.1|	-	0.00014	20.8	0.0	0.011	14.6	0.0	2.2	2	0	0	2	2	2	2	tRNA	methyl	transferase
ThiI	PF02568.14	gi|410670592|ref|YP_006922963.1|	-	0.012	15.2	0.0	0.039	13.5	0.0	1.9	1	1	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
Arginosuc_synth	PF00764.19	gi|410670592|ref|YP_006922963.1|	-	0.017	14.5	0.1	0.039	13.2	0.0	1.6	2	0	0	2	2	2	0	Arginosuccinate	synthase
PAPS_reduct	PF01507.19	gi|410670592|ref|YP_006922963.1|	-	0.063	13.3	0.0	0.093	12.8	0.0	1.3	1	0	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
Asn_synthase	PF00733.21	gi|410670592|ref|YP_006922963.1|	-	0.098	12.3	0.0	0.17	11.5	0.0	1.3	1	0	0	1	1	1	0	Asparagine	synthase
ATP_bind_3	PF01171.20	gi|410670592|ref|YP_006922963.1|	-	0.11	12.2	0.0	0.17	11.7	0.0	1.4	1	1	0	1	1	1	0	PP-loop	family
HTH_OrfB_IS605	PF12323.8	gi|410670593|ref|YP_006922964.1|	-	4.3e-19	67.7	1.1	1e-18	66.5	0.1	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
OrfB_Zn_ribbon	PF07282.11	gi|410670593|ref|YP_006922964.1|	-	4.8e-18	64.8	0.1	9.6e-18	63.9	0.1	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|410670593|ref|YP_006922964.1|	-	1.4e-15	57.6	0.4	2.6e-15	56.7	0.4	1.4	1	0	0	1	1	1	1	Probable	transposase
AAA_lid_10	PF17872.1	gi|410670593|ref|YP_006922964.1|	-	0.15	12.2	1.3	0.45	10.7	0.2	2.1	2	1	0	2	2	2	0	AAA	lid	domain
RQC	PF09382.10	gi|410670594|ref|YP_006922965.1|	-	5.6e-31	106.7	0.1	3e-30	104.3	0.0	2.2	2	0	0	2	2	2	1	RQC	domain
Helicase_C	PF00271.31	gi|410670594|ref|YP_006922965.1|	-	9.1e-23	80.7	0.0	2.6e-19	69.6	0.0	3.4	3	0	0	3	3	3	2	Helicase	conserved	C-terminal	domain
HRDC	PF00570.23	gi|410670594|ref|YP_006922965.1|	-	3.4e-21	75.0	0.0	6.7e-21	74.1	0.0	1.5	1	0	0	1	1	1	1	HRDC	domain
DEAD	PF00270.29	gi|410670594|ref|YP_006922965.1|	-	1.1e-19	70.9	0.0	7.7e-19	68.1	0.0	2.1	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
RecQ_Zn_bind	PF16124.5	gi|410670594|ref|YP_006922965.1|	-	6.1e-17	62.1	3.3	2.5e-16	60.1	3.3	2.2	1	0	0	1	1	1	1	RecQ	zinc-binding
ResIII	PF04851.15	gi|410670594|ref|YP_006922965.1|	-	0.00019	21.5	0.0	0.00041	20.4	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_Sgs1	PF11408.8	gi|410670594|ref|YP_006922965.1|	-	0.0047	16.9	0.1	0.011	15.7	0.1	1.5	1	0	0	1	1	1	1	Sgs1	RecQ	helicase
DUF2884	PF11101.8	gi|410670594|ref|YP_006922965.1|	-	0.14	11.6	0.0	0.25	10.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2884)
Reprolysin_5	PF13688.6	gi|410670597|ref|YP_006922968.1|	-	6.1e-05	23.2	2.6	9.4e-05	22.6	2.6	1.4	1	1	0	1	1	1	1	Metallo-peptidase	family	M12
DDE_3	PF13358.6	gi|410670599|ref|YP_006922970.1|	-	6.8e-25	87.5	0.6	2.1e-24	86.0	0.1	1.9	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|410670599|ref|YP_006922970.1|	-	2.7e-12	47.1	0.0	6.8e-12	45.8	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|410670599|ref|YP_006922970.1|	-	2.5e-08	33.8	0.0	6.6e-08	32.5	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_33	PF13592.6	gi|410670599|ref|YP_006922970.1|	-	4.6e-08	32.6	0.0	1.7e-07	30.8	0.0	2.0	2	0	0	2	2	2	1	Winged	helix-turn	helix
DDE_1	PF03184.19	gi|410670599|ref|YP_006922970.1|	-	1.1e-06	28.5	1.2	1.4e-06	28.1	0.1	1.8	2	1	0	2	2	2	1	DDE	superfamily	endonuclease
HTH_23	PF13384.6	gi|410670599|ref|YP_006922970.1|	-	4e-06	26.5	0.2	1.6e-05	24.5	0.0	2.1	3	0	0	3	3	3	1	Homeodomain-like	domain
rve	PF00665.26	gi|410670599|ref|YP_006922970.1|	-	5.5e-05	23.3	0.0	0.00011	22.4	0.0	1.5	1	0	0	1	1	1	1	Integrase	core	domain
HTH_28	PF13518.6	gi|410670599|ref|YP_006922970.1|	-	0.0026	17.8	0.0	0.006	16.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_ABP1_N	PF18107.1	gi|410670599|ref|YP_006922970.1|	-	0.0083	15.8	0.1	0.018	14.8	0.1	1.5	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
Arc_PepC_II	PF06847.11	gi|410670600|ref|YP_006922971.1|	-	1.4e-32	112.0	3.9	2.5e-32	111.2	0.0	2.7	2	1	0	2	2	2	1	Archaeal	Peptidase	A24	C-terminus	Type	II
Peptidase_A24	PF01478.18	gi|410670600|ref|YP_006922971.1|	-	2.5e-12	47.1	9.3	2.5e-12	47.1	9.3	1.8	2	1	0	2	2	2	1	Type	IV	leader	peptidase	family
CbiN	PF02553.15	gi|410670600|ref|YP_006922971.1|	-	0.038	14.0	0.5	0.12	12.4	0.5	1.8	1	0	0	1	1	1	0	Cobalt	transport	protein	component	CbiN
ASFV_L11L	PF05293.11	gi|410670600|ref|YP_006922971.1|	-	1.3	9.4	14.4	0.1	12.9	7.5	2.5	2	0	0	2	2	2	0	African	swine	fever	virus	(ASFV)	L11L	protein
RraA-like	PF03737.15	gi|410670601|ref|YP_006922972.1|	-	2.6e-41	141.3	2.6	2.6e-41	141.3	2.6	2.3	2	1	0	2	2	2	1	Aldolase/RraA
OMPdecase	PF00215.24	gi|410670601|ref|YP_006922972.1|	-	2.3e-19	69.9	4.9	4.3e-19	69.0	4.9	1.5	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
NanE	PF04131.14	gi|410670601|ref|YP_006922972.1|	-	1.5e-05	24.3	2.2	1.5e-05	24.3	2.2	1.8	2	0	0	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
PEP_mutase	PF13714.6	gi|410670601|ref|YP_006922972.1|	-	4.5e-05	23.0	3.9	0.021	14.3	0.1	2.9	1	1	2	3	3	3	2	Phosphoenolpyruvate	phosphomutase
ThiG	PF05690.14	gi|410670601|ref|YP_006922972.1|	-	4.5e-05	22.9	0.6	9e-05	21.9	0.6	1.4	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
His_biosynth	PF00977.21	gi|410670601|ref|YP_006922972.1|	-	8.1e-05	22.2	0.6	8.1e-05	22.2	0.6	2.5	2	1	1	3	3	3	1	Histidine	biosynthesis	protein
HMGL-like	PF00682.19	gi|410670601|ref|YP_006922972.1|	-	0.00015	21.4	4.7	0.0069	16.0	0.3	2.5	2	1	1	3	3	3	2	HMGL-like
DeoC	PF01791.9	gi|410670601|ref|YP_006922972.1|	-	0.0012	18.5	3.8	0.0015	18.2	0.8	2.2	1	1	1	2	2	2	1	DeoC/LacD	family	aldolase
Dus	PF01207.17	gi|410670601|ref|YP_006922972.1|	-	0.002	17.3	0.6	0.0044	16.1	0.4	1.8	1	1	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
DUF561	PF04481.12	gi|410670601|ref|YP_006922972.1|	-	0.0028	16.8	1.5	0.0088	15.2	1.5	1.9	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF561)
ADH_zinc_N	PF00107.26	gi|410670601|ref|YP_006922972.1|	-	0.014	15.4	4.1	0.2	11.6	4.2	2.4	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
CBM_17_28	PF03424.14	gi|410670601|ref|YP_006922972.1|	-	0.015	15.0	0.9	0.21	11.2	0.2	2.4	1	1	1	2	2	2	0	Carbohydrate	binding	domain	(family	17/28)
NMO	PF03060.15	gi|410670601|ref|YP_006922972.1|	-	0.021	14.2	6.9	0.058	12.8	6.9	1.7	1	1	0	1	1	1	0	Nitronate	monooxygenase
TMP-TENI	PF02581.17	gi|410670601|ref|YP_006922972.1|	-	0.041	13.2	4.8	0.21	10.9	4.8	2.2	1	1	0	1	1	1	0	Thiamine	monophosphate	synthase
DUF3983	PF13137.6	gi|410670601|ref|YP_006922972.1|	-	0.067	13.0	0.5	0.22	11.4	0.5	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3983)
Trp_syntA	PF00290.20	gi|410670601|ref|YP_006922972.1|	-	0.097	11.5	5.0	0.3	9.9	2.8	2.4	2	1	0	2	2	2	0	Tryptophan	synthase	alpha	chain
Ribul_P_3_epim	PF00834.19	gi|410670601|ref|YP_006922972.1|	-	1.5	8.2	4.8	8.5	5.7	3.4	2.3	1	1	1	2	2	2	0	Ribulose-phosphate	3	epimerase	family
OTCace_N	PF02729.21	gi|410670602|ref|YP_006922973.1|	-	3.3e-43	147.2	0.0	8.4e-43	145.9	0.0	1.6	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.24	gi|410670602|ref|YP_006922973.1|	-	4e-32	111.4	0.0	5.3e-32	111.1	0.0	1.1	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
PyrI	PF01948.18	gi|410670603|ref|YP_006922974.1|	-	7.2e-30	103.1	2.6	9.9e-30	102.7	2.6	1.2	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
PyrI_C	PF02748.15	gi|410670603|ref|YP_006922974.1|	-	4.2e-16	58.6	2.8	4.2e-16	58.6	2.8	1.9	2	0	0	2	2	2	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
RMP	PF14996.6	gi|410670603|ref|YP_006922974.1|	-	0.096	12.9	0.1	0.13	12.5	0.1	1.2	1	0	0	1	1	1	0	Retinal	Maintenance
DapB_C	PF05173.14	gi|410670604|ref|YP_006922975.1|	-	4.1e-46	155.9	0.1	6.1e-46	155.4	0.1	1.3	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	C-terminus
DapB_N	PF01113.20	gi|410670604|ref|YP_006922975.1|	-	3.8e-27	94.9	2.0	3.8e-27	94.9	2.0	1.6	2	0	0	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
3Beta_HSD	PF01073.19	gi|410670604|ref|YP_006922975.1|	-	0.034	13.1	1.7	0.08	11.9	1.6	1.6	1	1	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
DHDPS	PF00701.22	gi|410670605|ref|YP_006922976.1|	-	1.7e-92	309.2	0.2	1.9e-92	309.1	0.2	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
Ribosomal_S17e	PF00833.18	gi|410670606|ref|YP_006922977.1|	-	1.5e-13	50.7	0.6	1.6e-13	50.7	0.6	1.0	1	0	0	1	1	1	1	Ribosomal	S17
DNA_ligase_IV	PF11411.8	gi|410670606|ref|YP_006922977.1|	-	0.027	14.6	0.2	0.049	13.8	0.2	1.4	1	0	0	1	1	1	0	DNA	ligase	IV
PGPGW	PF09656.10	gi|410670607|ref|YP_006922978.1|	-	0.00069	19.1	3.5	0.0011	18.4	3.5	1.3	1	0	0	1	1	1	1	Putative	transmembrane	protein	(PGPGW)
SafA	PF17073.5	gi|410670607|ref|YP_006922978.1|	-	0.048	13.6	0.5	0.67	10.0	0.1	2.1	2	0	0	2	2	2	0	Two-component-system	connector	protein
DUF2070	PF09843.9	gi|410670607|ref|YP_006922978.1|	-	0.45	8.8	2.5	0.49	8.6	2.5	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
IMS	PF00817.20	gi|410670608|ref|YP_006922979.1|	-	1.8e-47	161.1	0.0	3e-47	160.4	0.0	1.4	1	0	0	1	1	1	1	impB/mucB/samB	family
IMS_C	PF11799.8	gi|410670608|ref|YP_006922979.1|	-	6.1e-20	72.1	0.1	1.2e-19	71.1	0.1	1.4	1	0	0	1	1	1	1	impB/mucB/samB	family	C-terminal	domain
IMS_HHH	PF11798.8	gi|410670608|ref|YP_006922979.1|	-	9.4e-06	25.7	0.0	3.1e-05	24.0	0.0	2.0	1	0	0	1	1	1	1	IMS	family	HHH	motif
DUF4332	PF14229.6	gi|410670608|ref|YP_006922979.1|	-	0.00062	20.0	0.0	0.0012	19.0	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4332)
Cdd1	PF11731.8	gi|410670608|ref|YP_006922979.1|	-	0.045	14.0	0.0	0.12	12.7	0.0	1.7	1	0	0	1	1	1	0	Pathogenicity	locus
HHH_5	PF14520.6	gi|410670608|ref|YP_006922979.1|	-	0.06	14.0	0.7	0.37	11.4	0.7	2.3	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
Orthopox_F14	PF06076.12	gi|410670608|ref|YP_006922979.1|	-	0.29	11.4	0.1	0.29	11.4	0.1	2.5	3	0	0	3	3	3	0	Orthopoxvirus	F14	protein
Dala_Dala_lig_C	PF07478.13	gi|410670609|ref|YP_006922980.1|	-	7.6e-26	90.9	0.0	1.2e-25	90.3	0.0	1.3	1	0	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
Methyltransf_25	PF13649.6	gi|410670609|ref|YP_006922980.1|	-	1.7e-20	73.5	0.0	3.5e-20	72.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410670609|ref|YP_006922980.1|	-	3.8e-17	62.7	0.0	6.9e-17	61.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|410670609|ref|YP_006922980.1|	-	1.4e-14	54.1	0.0	2.5e-14	53.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|410670609|ref|YP_006922980.1|	-	1.3e-09	37.7	0.0	3.2e-09	36.5	0.0	1.6	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|410670609|ref|YP_006922980.1|	-	1.2e-08	35.0	0.0	3.1e-08	33.6	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|410670609|ref|YP_006922980.1|	-	8.2e-06	25.5	0.0	1.5e-05	24.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
CMAS	PF02353.20	gi|410670609|ref|YP_006922980.1|	-	0.00035	20.0	0.0	0.00057	19.3	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
TehB	PF03848.14	gi|410670609|ref|YP_006922980.1|	-	0.00038	19.9	0.0	0.00063	19.2	0.0	1.4	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Cons_hypoth95	PF03602.15	gi|410670609|ref|YP_006922980.1|	-	0.0013	18.4	0.0	0.0024	17.5	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
ATPgrasp_Ter	PF15632.6	gi|410670609|ref|YP_006922980.1|	-	0.0014	18.4	0.0	0.084	12.6	0.0	2.9	3	0	0	3	3	3	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
PCMT	PF01135.19	gi|410670609|ref|YP_006922980.1|	-	0.0029	17.4	0.0	0.006	16.4	0.0	1.5	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MetW	PF07021.12	gi|410670609|ref|YP_006922980.1|	-	0.0034	17.0	0.0	0.0059	16.2	0.0	1.3	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_9	PF08003.11	gi|410670609|ref|YP_006922980.1|	-	0.0059	15.6	0.0	0.2	10.6	0.0	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1698)
Methyltr_RsmB-F	PF01189.17	gi|410670609|ref|YP_006922980.1|	-	0.0098	15.5	0.0	0.015	14.9	0.0	1.3	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
ATP-grasp_3	PF02655.14	gi|410670609|ref|YP_006922980.1|	-	0.01	15.9	0.0	0.03	14.4	0.0	1.8	1	1	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_4	PF13535.6	gi|410670609|ref|YP_006922980.1|	-	0.01	15.4	0.0	0.027	14.1	0.0	1.8	1	1	0	1	1	1	0	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|410670609|ref|YP_006922980.1|	-	0.043	13.3	0.0	0.14	11.6	0.0	1.8	2	0	0	2	2	2	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Methyltransf_4	PF02390.17	gi|410670609|ref|YP_006922980.1|	-	0.044	13.2	0.0	0.16	11.4	0.0	1.9	2	0	0	2	2	2	0	Putative	methyltransferase
Dala_Dala_lig_N	PF01820.21	gi|410670609|ref|YP_006922980.1|	-	0.064	13.7	0.0	0.21	12.1	0.0	2.0	2	1	0	2	2	2	0	D-ala	D-ala	ligase	N-terminus
Methyltransf_32	PF13679.6	gi|410670609|ref|YP_006922980.1|	-	0.075	13.0	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
TTL	PF03133.15	gi|410670609|ref|YP_006922980.1|	-	0.12	11.5	0.0	0.22	10.6	0.0	1.3	1	0	0	1	1	1	0	Tubulin-tyrosine	ligase	family
Cadherin_5	PF17892.1	gi|410670610|ref|YP_006922981.1|	-	0.066	13.2	0.5	0.18	11.8	0.1	1.9	2	0	0	2	2	2	0	Cadherin-like	domain
DHHA1	PF02272.19	gi|410670611|ref|YP_006922982.1|	-	0.00029	21.3	0.2	0.00036	20.9	0.2	1.1	1	0	0	1	1	1	1	DHHA1	domain
Glycos_transf_2	PF00535.26	gi|410670612|ref|YP_006922983.1|	-	1.8e-06	27.9	0.0	3e-06	27.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
DNA_alkylation	PF08713.11	gi|410670613|ref|YP_006922984.1|	-	7.9e-59	198.9	2.1	8.9e-59	198.8	2.1	1.0	1	0	0	1	1	1	1	DNA	alkylation	repair	enzyme
YvbH_ext	PF11724.8	gi|410670613|ref|YP_006922984.1|	-	0.0049	17.1	1.1	0.015	15.6	1.1	2.0	1	0	0	1	1	1	1	YvbH-like	oligomerisation	region
Pirin	PF02678.16	gi|410670614|ref|YP_006922985.1|	-	1.9e-35	121.1	0.6	9.5e-35	118.8	0.4	2.0	2	0	0	2	2	2	1	Pirin
Pirin_C	PF05726.13	gi|410670614|ref|YP_006922985.1|	-	5.1e-30	103.9	0.0	1.2e-29	102.7	0.0	1.6	2	0	0	2	2	2	1	Pirin	C-terminal	cupin	domain
Cupin_2	PF07883.11	gi|410670614|ref|YP_006922985.1|	-	0.00031	20.4	0.1	0.1	12.3	0.1	2.4	2	0	0	2	2	2	2	Cupin	domain
Cupin_3	PF05899.12	gi|410670614|ref|YP_006922985.1|	-	0.031	14.0	0.0	1.5	8.6	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF861)
DUF1624	PF07786.12	gi|410670615|ref|YP_006922986.1|	-	5.9e-72	241.8	12.0	6.9e-72	241.6	12.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1624)
Acyl_transf_3	PF01757.22	gi|410670615|ref|YP_006922986.1|	-	2.4e-09	36.7	24.4	1.7e-05	24.0	6.7	2.3	1	1	1	2	2	2	2	Acyltransferase	family
OpgC_C	PF10129.9	gi|410670615|ref|YP_006922986.1|	-	2.5e-05	23.3	6.6	0.00047	19.1	3.6	2.5	1	1	0	2	2	2	2	OpgC	protein
DUF2072	PF09845.9	gi|410670616|ref|YP_006922987.1|	-	1.9e-46	157.6	0.3	2.2e-46	157.4	0.3	1.0	1	0	0	1	1	1	1	Zn-ribbon	containing	protein
FEZ	PF07763.13	gi|410670616|ref|YP_006922987.1|	-	0.00034	20.4	0.8	0.00039	20.2	0.8	1.1	1	0	0	1	1	1	1	FEZ-like	protein
Itfg2	PF15907.5	gi|410670616|ref|YP_006922987.1|	-	0.089	11.8	0.0	0.17	10.9	0.0	1.4	2	0	0	2	2	2	0	Integrin-alpha	FG-GAP	repeat-containing	protein	2
DUF4399	PF14347.6	gi|410670616|ref|YP_006922987.1|	-	0.14	12.5	0.3	0.45	10.9	0.3	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4399)
PNP_UDP_1	PF01048.20	gi|410670617|ref|YP_006922988.1|	-	2e-44	151.6	0.0	2.3e-44	151.4	0.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
Pribosyltran	PF00156.27	gi|410670618|ref|YP_006922989.1|	-	1.6e-15	57.0	0.0	3.3e-15	56.0	0.0	1.5	1	1	1	2	2	2	1	Phosphoribosyl	transferase	domain
SRP54	PF00448.22	gi|410670619|ref|YP_006922990.1|	-	1.5e-70	236.8	0.0	2.5e-70	236.1	0.0	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.19	gi|410670619|ref|YP_006922990.1|	-	4.6e-27	94.6	1.3	4.6e-27	94.6	1.3	2.5	3	0	0	3	3	1	1	Signal	peptide	binding	domain
SRP54_N	PF02881.19	gi|410670619|ref|YP_006922990.1|	-	1.1e-19	70.3	0.5	3.4e-19	68.8	0.5	1.9	1	0	0	1	1	1	1	SRP54-type	protein,	helical	bundle	domain
cobW	PF02492.19	gi|410670619|ref|YP_006922990.1|	-	1.2e-05	25.0	0.2	0.00015	21.4	0.2	2.2	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
CbiA	PF01656.23	gi|410670619|ref|YP_006922990.1|	-	1.3e-05	25.3	0.0	7.6e-05	22.8	0.0	2.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Zeta_toxin	PF06414.12	gi|410670619|ref|YP_006922990.1|	-	0.00026	20.3	0.0	0.00054	19.3	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
6PF2K	PF01591.18	gi|410670619|ref|YP_006922990.1|	-	0.00073	18.9	0.0	0.0016	17.8	0.0	1.5	1	0	0	1	1	1	1	6-phosphofructo-2-kinase
MeaB	PF03308.16	gi|410670619|ref|YP_006922990.1|	-	0.0025	16.8	0.0	0.0085	15.1	0.0	1.8	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_24	PF13479.6	gi|410670619|ref|YP_006922990.1|	-	0.0074	16.0	0.0	0.026	14.3	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|410670619|ref|YP_006922990.1|	-	0.0075	16.6	0.1	0.023	15.0	0.0	1.9	2	0	0	2	2	1	1	AAA	domain
APS_kinase	PF01583.20	gi|410670619|ref|YP_006922990.1|	-	0.0093	15.9	0.0	0.031	14.2	0.0	1.9	2	0	0	2	2	1	1	Adenylylsulphate	kinase
TFIIA_gamma_N	PF02268.16	gi|410670619|ref|YP_006922990.1|	-	0.011	15.8	0.2	0.035	14.1	0.0	1.9	2	0	0	2	2	1	0	Transcription	initiation	factor	IIA,	gamma	subunit,	helical	domain
ATP_bind_1	PF03029.17	gi|410670619|ref|YP_006922990.1|	-	0.011	15.6	0.0	0.06	13.1	0.0	2.2	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
Thymidylate_kin	PF02223.17	gi|410670619|ref|YP_006922990.1|	-	0.015	15.0	0.2	0.052	13.2	0.0	2.0	2	0	0	2	2	2	0	Thymidylate	kinase
AAA_33	PF13671.6	gi|410670619|ref|YP_006922990.1|	-	0.015	15.5	0.0	0.027	14.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|410670619|ref|YP_006922990.1|	-	0.015	15.6	0.0	0.029	14.7	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
MobB	PF03205.14	gi|410670619|ref|YP_006922990.1|	-	0.017	15.0	0.0	0.037	13.9	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
TrwB_AAD_bind	PF10412.9	gi|410670619|ref|YP_006922990.1|	-	0.018	14.0	0.0	0.034	13.1	0.0	1.4	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_28	PF13521.6	gi|410670619|ref|YP_006922990.1|	-	0.019	15.2	0.0	0.039	14.2	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
LpxK	PF02606.14	gi|410670619|ref|YP_006922990.1|	-	0.032	13.3	0.0	0.068	12.2	0.0	1.5	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
MMR_HSR1	PF01926.23	gi|410670619|ref|YP_006922990.1|	-	0.033	14.3	0.2	0.23	11.5	0.2	2.3	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_18	PF13238.6	gi|410670619|ref|YP_006922990.1|	-	0.033	14.7	0.0	0.099	13.2	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|410670619|ref|YP_006922990.1|	-	0.05	13.3	0.1	0.16	11.7	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
KTI12	PF08433.10	gi|410670619|ref|YP_006922990.1|	-	0.085	12.3	0.0	0.18	11.2	0.0	1.6	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
G-alpha	PF00503.20	gi|410670619|ref|YP_006922990.1|	-	0.095	11.8	0.0	0.15	11.1	0.0	1.6	1	1	0	1	1	1	0	G-protein	alpha	subunit
DUF4919	PF16266.5	gi|410670619|ref|YP_006922990.1|	-	0.098	12.6	0.2	0.68	9.8	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4919)
NTPase_1	PF03266.15	gi|410670619|ref|YP_006922990.1|	-	0.1	12.5	0.5	1.5	8.7	0.0	2.6	3	0	0	3	3	2	0	NTPase
PduV-EutP	PF10662.9	gi|410670619|ref|YP_006922990.1|	-	0.13	12.0	0.8	0.37	10.5	0.7	1.9	1	1	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_16	PF13191.6	gi|410670619|ref|YP_006922990.1|	-	0.18	12.2	0.1	0.54	10.6	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
GATase	PF00117.28	gi|410670620|ref|YP_006922991.1|	-	2.7e-33	115.3	0.0	3e-33	115.2	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|410670620|ref|YP_006922991.1|	-	2.9e-13	50.1	2.0	1e-11	45.0	0.7	2.8	1	1	1	2	2	2	1	Peptidase	C26
ATPase	PF06745.13	gi|410670622|ref|YP_006922993.1|	-	3.5e-76	255.6	0.1	2.9e-45	154.4	0.1	2.4	2	1	0	2	2	2	2	KaiC
AAA_25	PF13481.6	gi|410670622|ref|YP_006922993.1|	-	1e-12	48.1	0.0	2.7e-05	23.9	0.0	2.6	2	1	0	2	2	2	2	AAA	domain
GvpD	PF07088.11	gi|410670622|ref|YP_006922993.1|	-	1.1e-06	27.5	1.6	0.00035	19.3	0.0	2.6	3	0	0	3	3	3	2	GvpD	gas	vesicle	protein
DnaB_C	PF03796.15	gi|410670622|ref|YP_006922993.1|	-	2e-06	27.4	0.0	0.015	14.6	0.0	2.3	2	0	0	2	2	2	2	DnaB-like	helicase	C	terminal	domain
AAA_19	PF13245.6	gi|410670622|ref|YP_006922993.1|	-	3.5e-05	24.2	0.1	0.00086	19.7	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
Rad51	PF08423.11	gi|410670622|ref|YP_006922993.1|	-	4.2e-05	22.9	2.7	0.067	12.4	0.1	2.7	3	0	0	3	3	3	2	Rad51
DUF2075	PF09848.9	gi|410670622|ref|YP_006922993.1|	-	8.3e-05	22.0	0.4	0.025	13.8	0.0	2.4	2	1	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
PAXNEB	PF05625.11	gi|410670622|ref|YP_006922993.1|	-	0.00037	19.7	2.9	0.22	10.6	0.3	3.0	3	0	0	3	3	3	2	PAXNEB	protein
MEDS	PF14417.6	gi|410670622|ref|YP_006922993.1|	-	0.001	18.9	0.0	0.54	10.1	0.0	2.2	2	0	0	2	2	2	2	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
RecA	PF00154.21	gi|410670622|ref|YP_006922993.1|	-	0.0011	18.5	0.6	0.14	11.6	0.1	2.3	2	0	0	2	2	2	1	recA	bacterial	DNA	recombination	protein
IstB_IS21	PF01695.17	gi|410670622|ref|YP_006922993.1|	-	0.0034	17.1	1.4	1.9	8.2	0.0	3.5	4	0	0	4	4	4	1	IstB-like	ATP	binding	protein
AAA_30	PF13604.6	gi|410670622|ref|YP_006922993.1|	-	0.0052	16.5	0.0	0.079	12.7	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
DAP3	PF10236.9	gi|410670622|ref|YP_006922993.1|	-	0.055	12.6	0.1	3.9	6.5	0.0	2.2	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
DEAD	PF00270.29	gi|410670622|ref|YP_006922993.1|	-	0.056	13.2	0.0	2.3	7.9	0.0	2.5	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA_5	PF07728.14	gi|410670622|ref|YP_006922993.1|	-	0.059	13.4	0.3	4.5	7.3	0.0	2.6	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.6	gi|410670622|ref|YP_006922993.1|	-	0.066	13.6	3.3	1.6	9.1	0.1	2.4	2	0	0	2	2	2	0	AAA	ATPase	domain
NACHT	PF05729.12	gi|410670622|ref|YP_006922993.1|	-	0.075	13.0	0.4	6.8	6.6	0.0	2.6	2	1	0	2	2	2	0	NACHT	domain
AAA_22	PF13401.6	gi|410670622|ref|YP_006922993.1|	-	0.095	13.0	4.5	9.5	6.5	0.1	3.0	2	1	0	2	2	2	0	AAA	domain
Sigma54_activat	PF00158.26	gi|410670622|ref|YP_006922993.1|	-	0.095	12.4	0.1	4.6	6.9	0.0	2.3	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_24	PF13479.6	gi|410670622|ref|YP_006922993.1|	-	0.097	12.4	0.0	3.9	7.2	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
AAA_11	PF13086.6	gi|410670622|ref|YP_006922993.1|	-	0.12	12.2	0.1	3.1	7.5	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
T2SSE	PF00437.20	gi|410670622|ref|YP_006922993.1|	-	0.14	11.2	0.5	9.1	5.3	0.0	2.3	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
AAA_10	PF12846.7	gi|410670622|ref|YP_006922993.1|	-	0.14	11.0	3.6	0.21	10.5	0.0	2.6	3	0	0	3	3	3	0	AAA-like	domain
AAA_7	PF12775.7	gi|410670622|ref|YP_006922993.1|	-	0.15	11.6	1.2	3	7.3	0.4	2.4	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
AAA_29	PF13555.6	gi|410670622|ref|YP_006922993.1|	-	0.18	11.6	1.7	8.3	6.2	0.4	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|410670622|ref|YP_006922993.1|	-	0.44	11.0	5.8	4.8	7.6	0.1	2.8	2	2	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DeoC	PF01791.9	gi|410670623|ref|YP_006922994.1|	-	1.4e-62	211.4	0.0	1.7e-62	211.2	0.0	1.0	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
DHQS	PF01959.16	gi|410670624|ref|YP_006922995.1|	-	6.5e-147	489.0	4.7	7.3e-147	488.9	4.7	1.0	1	0	0	1	1	1	1	3-dehydroquinate	synthase	II
OapA	PF04225.12	gi|410670624|ref|YP_006922995.1|	-	0.021	14.9	0.1	0.95	9.6	0.0	2.6	1	1	1	2	2	2	0	Opacity-associated	protein	A	LysM-like	domain
DUF2577	PF10844.8	gi|410670624|ref|YP_006922995.1|	-	0.049	13.8	0.0	1.6	9.0	0.0	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2577)
DHquinase_I	PF01487.15	gi|410670625|ref|YP_006922996.1|	-	1.9e-52	178.8	0.1	2.1e-52	178.6	0.1	1.0	1	0	0	1	1	1	1	Type	I	3-dehydroquinase
Shikimate_dh_N	PF08501.11	gi|410670626|ref|YP_006922997.1|	-	3.6e-27	94.4	0.0	9.8e-27	93.0	0.0	1.8	2	0	0	2	2	2	1	Shikimate	dehydrogenase	substrate	binding	domain
SDH_C	PF18317.1	gi|410670626|ref|YP_006922997.1|	-	1.8e-15	56.4	0.3	4e-15	55.3	0.3	1.7	1	0	0	1	1	1	1	Shikimate	5'-dehydrogenase	C-terminal	domain
Shikimate_DH	PF01488.20	gi|410670626|ref|YP_006922997.1|	-	3.7e-10	40.0	0.0	7.1e-10	39.1	0.0	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.17	gi|410670626|ref|YP_006922997.1|	-	3.3e-05	24.4	0.0	6.5e-05	23.4	0.0	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|410670626|ref|YP_006922997.1|	-	0.0005	19.5	0.0	0.0011	18.4	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|410670626|ref|YP_006922997.1|	-	0.0035	17.6	0.1	0.0089	16.3	0.1	1.7	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
adh_short	PF00106.25	gi|410670626|ref|YP_006922997.1|	-	0.0095	15.4	0.2	0.02	14.4	0.2	1.7	1	1	0	1	1	1	1	short	chain	dehydrogenase
NAD_binding_7	PF13241.6	gi|410670626|ref|YP_006922997.1|	-	0.011	16.1	0.0	0.018	15.5	0.0	1.4	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Pyr_redox_3	PF13738.6	gi|410670626|ref|YP_006922997.1|	-	0.04	13.2	0.0	0.054	12.7	0.0	1.2	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
THF_DHG_CYH_C	PF02882.19	gi|410670626|ref|YP_006922997.1|	-	0.053	12.8	0.0	0.39	10.0	0.0	2.3	3	1	0	3	3	3	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
PDH	PF02153.17	gi|410670627|ref|YP_006922998.1|	-	9.5e-55	185.4	0.0	2.5e-54	184.0	0.0	1.6	2	0	0	2	2	2	1	Prephenate	dehydrogenase
NAD_binding_2	PF03446.15	gi|410670627|ref|YP_006922998.1|	-	2.2e-09	37.7	0.0	4.8e-09	36.6	0.0	1.5	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.17	gi|410670627|ref|YP_006922998.1|	-	7.1e-08	32.9	0.0	2.2e-07	31.4	0.0	1.9	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|410670627|ref|YP_006922998.1|	-	5e-06	26.0	0.0	1e-05	25.0	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
FDX-ACB	PF03147.14	gi|410670627|ref|YP_006922998.1|	-	4.8e-05	23.7	0.0	0.00017	21.9	0.0	1.9	2	0	0	2	2	2	1	Ferredoxin-fold	anticodon	binding	domain
IlvN	PF07991.12	gi|410670627|ref|YP_006922998.1|	-	0.00066	19.3	0.0	0.0018	17.9	0.0	1.7	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|410670627|ref|YP_006922998.1|	-	0.0028	17.7	3.0	0.039	13.9	0.1	2.6	1	1	1	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
CoA_binding	PF02629.19	gi|410670627|ref|YP_006922998.1|	-	0.021	15.5	0.0	0.061	14.0	0.0	1.8	1	0	0	1	1	1	0	CoA	binding	domain
Epimerase	PF01370.21	gi|410670627|ref|YP_006922998.1|	-	0.057	12.9	0.0	0.095	12.1	0.0	1.4	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
Semialdhyde_dh	PF01118.24	gi|410670627|ref|YP_006922998.1|	-	0.095	13.1	0.2	0.64	10.5	0.2	2.3	1	1	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|410670627|ref|YP_006922998.1|	-	0.098	12.3	0.4	0.77	9.4	0.2	2.4	2	1	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
GFO_IDH_MocA	PF01408.22	gi|410670627|ref|YP_006922998.1|	-	0.11	13.3	0.0	1.9	9.3	0.0	2.7	3	0	0	3	3	3	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
AlaDh_PNT_C	PF01262.21	gi|410670627|ref|YP_006922998.1|	-	0.9	8.8	3.4	5.3	6.3	0.6	2.9	3	0	0	3	3	3	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
TIM	PF00121.18	gi|410670629|ref|YP_006923000.1|	-	1e-11	44.7	0.0	1.5e-11	44.2	0.0	1.2	1	0	0	1	1	1	1	Triosephosphate	isomerase
ThiG	PF05690.14	gi|410670629|ref|YP_006923000.1|	-	6.2e-05	22.4	0.5	0.00022	20.6	0.3	1.9	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.15	gi|410670629|ref|YP_006923000.1|	-	0.00021	20.8	0.8	0.00021	20.8	0.8	2.0	1	1	1	2	2	2	1	Nitronate	monooxygenase
FMN_dh	PF01070.18	gi|410670629|ref|YP_006923000.1|	-	0.0069	15.5	1.5	0.0086	15.1	0.6	1.6	2	0	0	2	2	2	1	FMN-dependent	dehydrogenase
SpoVS	PF04232.12	gi|410670629|ref|YP_006923000.1|	-	0.041	13.6	0.3	0.2	11.4	0.0	2.2	2	0	0	2	2	2	0	Stage	V	sporulation	protein	S	(SpoVS)
Fae	PF08714.11	gi|410670630|ref|YP_006923001.1|	-	1.3e-67	226.7	0.3	2.9e-67	225.6	0.3	1.6	1	0	0	1	1	1	1	Formaldehyde-activating	enzyme	(Fae)
OMPdecase	PF00215.24	gi|410670630|ref|YP_006923001.1|	-	1.3e-26	93.6	0.8	1.5e-25	90.2	0.9	2.2	2	0	0	2	2	2	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
Ribul_P_3_epim	PF00834.19	gi|410670630|ref|YP_006923001.1|	-	5.5e-05	22.7	0.9	0.00031	20.2	0.9	2.1	1	1	0	1	1	1	1	Ribulose-phosphate	3	epimerase	family
QRPTase_C	PF01729.19	gi|410670630|ref|YP_006923001.1|	-	0.0039	17.0	0.7	0.023	14.5	0.4	2.4	1	1	1	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
TMP-TENI	PF02581.17	gi|410670630|ref|YP_006923001.1|	-	0.053	12.8	0.7	0.4	10.0	0.3	2.2	2	0	0	2	2	2	0	Thiamine	monophosphate	synthase
PcrB	PF01884.17	gi|410670630|ref|YP_006923001.1|	-	0.053	13.0	1.0	0.41	10.1	0.2	2.2	2	0	0	2	2	2	0	PcrB	family
HhH-GPD	PF00730.25	gi|410670631|ref|YP_006923002.1|	-	4.8e-24	84.9	0.0	6.5e-24	84.5	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|410670631|ref|YP_006923002.1|	-	1.8e-11	43.3	0.1	1.6e-10	40.3	0.0	2.6	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|410670631|ref|YP_006923002.1|	-	0.00084	19.9	0.1	0.59	10.8	0.0	2.5	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
EndIII_4Fe-2S	PF10576.9	gi|410670631|ref|YP_006923002.1|	-	0.002	18.4	5.1	0.0033	17.7	5.1	1.4	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
DUF2400	PF09674.10	gi|410670631|ref|YP_006923002.1|	-	0.075	13.0	0.0	0.13	12.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2400)
HHH_2	PF12826.7	gi|410670631|ref|YP_006923002.1|	-	0.12	12.5	0.0	3.5	7.8	0.0	2.2	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
DUF4139	PF13598.6	gi|410670632|ref|YP_006923003.1|	-	1.6e-07	31.2	1.5	8e-07	29.0	1.5	2.2	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4139)
PAS_9	PF13426.7	gi|410670633|ref|YP_006923004.1|	-	7.5e-37	125.7	0.3	5.8e-13	49.0	0.0	3.8	4	0	0	4	4	3	3	PAS	domain
PAS_4	PF08448.10	gi|410670633|ref|YP_006923004.1|	-	2.3e-31	108.3	0.0	7.7e-10	39.0	0.0	3.3	3	0	0	3	3	3	3	PAS	fold
PAS	PF00989.25	gi|410670633|ref|YP_006923004.1|	-	4e-31	107.3	0.0	2.1e-10	40.6	0.0	3.5	3	0	0	3	3	3	3	PAS	fold
Response_reg	PF00072.24	gi|410670633|ref|YP_006923004.1|	-	1.7e-27	95.8	0.2	4.9e-27	94.3	0.2	1.9	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|410670633|ref|YP_006923004.1|	-	2.5e-26	92.4	0.1	7.3e-26	90.9	0.1	1.9	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|410670633|ref|YP_006923004.1|	-	1.9e-22	79.3	0.0	8e-07	29.3	0.0	3.8	3	0	0	3	3	3	3	PAS	fold
PAS_8	PF13188.7	gi|410670633|ref|YP_006923004.1|	-	1.3e-11	44.3	0.1	4e-06	26.7	0.0	3.5	3	0	0	3	3	3	2	PAS	domain
HisKA	PF00512.25	gi|410670633|ref|YP_006923004.1|	-	2.7e-10	40.1	0.0	9.5e-10	38.4	0.0	2.1	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.6	gi|410670633|ref|YP_006923004.1|	-	9.3e-05	22.3	0.0	0.00023	21.0	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_12	PF18095.1	gi|410670633|ref|YP_006923004.1|	-	0.00017	21.3	0.0	1.1	8.9	0.0	3.4	3	0	0	3	3	3	2	UPF0242	C-terminal	PAS-like	domain
PAS_7	PF12860.7	gi|410670633|ref|YP_006923004.1|	-	0.0026	17.9	0.7	4.6	7.4	0.0	3.9	3	3	0	3	3	3	1	PAS	fold
SNARE_assoc	PF09335.11	gi|410670634|ref|YP_006923005.1|	-	1.4e-07	32.0	0.4	1.4e-07	32.0	0.4	1.0	1	0	0	1	1	1	1	SNARE	associated	Golgi	protein
DUF1648	PF07853.11	gi|410670635|ref|YP_006923006.1|	-	0.087	12.5	0.3	0.087	12.5	0.3	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1648)
LapA_dom	PF06305.11	gi|410670635|ref|YP_006923006.1|	-	0.12	12.3	1.3	8.1	6.3	0.1	2.1	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
Fic	PF02661.18	gi|410670636|ref|YP_006923007.1|	-	4.7e-22	78.7	0.1	3e-21	76.1	0.0	2.3	2	0	0	2	2	2	1	Fic/DOC	family
HTH_DeoR	PF08220.12	gi|410670636|ref|YP_006923007.1|	-	0.00013	21.7	0.0	0.00045	19.9	0.0	2.0	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|410670636|ref|YP_006923007.1|	-	0.0015	18.4	0.0	0.0094	15.9	0.0	2.3	2	0	0	2	2	2	1	HTH	domain
HTH_27	PF13463.6	gi|410670636|ref|YP_006923007.1|	-	0.0029	18.1	0.3	0.57	10.7	0.0	3.0	3	0	0	3	3	3	1	Winged	helix	DNA-binding	domain
FGAR-AT_N	PF18076.1	gi|410670636|ref|YP_006923007.1|	-	0.0072	16.3	0.1	0.27	11.2	0.1	2.5	1	1	0	1	1	1	1	Formylglycinamide	ribonucleotide	amidotransferase	N-terminal
TrmB	PF01978.19	gi|410670636|ref|YP_006923007.1|	-	0.014	15.3	0.9	0.034	14.0	0.5	2.0	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Penicillinase_R	PF03965.16	gi|410670636|ref|YP_006923007.1|	-	0.037	14.4	0.1	0.11	12.9	0.1	1.8	1	0	0	1	1	1	0	Penicillinase	repressor
Fic_N	PF13784.6	gi|410670636|ref|YP_006923007.1|	-	0.047	13.7	0.0	0.14	12.2	0.0	1.7	1	0	0	1	1	1	0	Fic/DOC	family	N-terminal
DUF4172	PF13776.6	gi|410670636|ref|YP_006923007.1|	-	0.12	12.7	0.0	0.33	11.3	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4172)
Rrf2	PF02082.20	gi|410670636|ref|YP_006923007.1|	-	0.13	12.7	0.0	0.56	10.6	0.0	2.1	1	1	0	1	1	1	0	Transcriptional	regulator
PuR_N	PF09182.10	gi|410670636|ref|YP_006923007.1|	-	0.13	12.2	0.0	0.42	10.6	0.0	1.8	1	0	0	1	1	1	0	Bacterial	purine	repressor,	N-terminal
Cytochrom_C	PF00034.21	gi|410670637|ref|YP_006923008.1|	-	1.5e-07	32.5	0.0	3.3e-07	31.4	0.0	1.5	1	0	0	1	1	1	1	Cytochrome	c
Cytochrome_CBB3	PF13442.6	gi|410670637|ref|YP_006923008.1|	-	7.3e-06	26.2	0.0	1.6e-05	25.1	0.0	1.5	1	0	0	1	1	1	1	Cytochrome	C	oxidase,	cbb3-type,	subunit	III
2-Hacid_dh_C	PF02826.19	gi|410670638|ref|YP_006923009.1|	-	2.5e-13	49.8	0.0	2.7e-13	49.7	0.0	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
E1-E2_ATPase	PF00122.20	gi|410670639|ref|YP_006923010.1|	-	2.7e-54	183.4	4.0	6.2e-54	182.3	0.4	2.7	2	0	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|410670639|ref|YP_006923010.1|	-	6.6e-43	147.4	3.6	1.1e-42	146.7	3.6	1.4	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|410670639|ref|YP_006923010.1|	-	3.4e-33	113.9	2.1	1.8e-15	57.1	0.2	3.2	2	0	0	2	2	2	2	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|410670639|ref|YP_006923010.1|	-	2.9e-05	24.0	2.9	0.0038	17.0	0.3	2.5	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Tox-PL-2	PF15643.6	gi|410670639|ref|YP_006923010.1|	-	0.0018	18.4	0.2	2.2	8.4	0.0	2.9	3	0	0	3	3	3	2	Papain	fold	toxin	2
CT_C_D	PF02682.16	gi|410670639|ref|YP_006923010.1|	-	0.031	14.0	0.2	4	7.1	0.1	2.6	1	1	1	2	2	2	0	Carboxyltransferase	domain,	subdomain	C	and	D
Ald_Xan_dh_C	PF01315.22	gi|410670639|ref|YP_006923010.1|	-	0.069	13.5	0.9	0.27	11.6	0.9	2.0	1	0	0	1	1	1	0	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
Amidase02_C	PF12123.8	gi|410670639|ref|YP_006923010.1|	-	0.094	12.4	0.0	0.22	11.3	0.0	1.6	1	0	0	1	1	1	0	N-acetylmuramoyl-l-alanine	amidase
DUF3784	PF12650.7	gi|410670639|ref|YP_006923010.1|	-	0.1	12.8	2.7	0.14	12.4	0.3	2.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF3784)
HAD	PF12710.7	gi|410670639|ref|YP_006923010.1|	-	0.14	12.5	0.0	0.37	11.2	0.0	1.8	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
DUF2207	PF09972.9	gi|410670639|ref|YP_006923010.1|	-	1.4	7.5	5.8	0.35	9.6	0.2	2.5	3	0	0	3	3	3	0	Predicted	membrane	protein	(DUF2207)
Phage_integr_3	PF16795.5	gi|410670640|ref|YP_006923011.1|	-	5.6e-36	123.9	0.3	7.9e-36	123.4	0.3	1.2	1	0	0	1	1	1	1	Archaeal	phage	integrase
CGGC	PF08821.11	gi|410670641|ref|YP_006923012.1|	-	4.8e-29	100.7	0.6	5.3e-29	100.5	0.6	1.0	1	0	0	1	1	1	1	CGGC	domain
tRNA-Thr_ED	PF08915.11	gi|410670642|ref|YP_006923013.1|	-	4e-46	156.5	2.0	4.4e-46	156.4	2.0	1.0	1	0	0	1	1	1	1	Archaea-specific	editing	domain	of	threonyl-tRNA	synthetase
ATPase	PF06745.13	gi|410670642|ref|YP_006923013.1|	-	0.057	12.8	0.5	0.07	12.5	0.5	1.1	1	0	0	1	1	1	0	KaiC
NTP_transf_9	PF04248.12	gi|410670643|ref|YP_006923014.1|	-	3.8e-16	58.8	0.1	4.4e-16	58.5	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF427)
PH	PF00169.29	gi|410670643|ref|YP_006923014.1|	-	0.027	15.0	0.1	0.032	14.7	0.1	1.3	1	0	0	1	1	1	0	PH	domain
HGD-D	PF06050.13	gi|410670644|ref|YP_006923015.1|	-	7.9e-91	305.2	0.1	9.2e-91	305.0	0.1	1.0	1	0	0	1	1	1	1	2-hydroxyglutaryl-CoA	dehydratase,	D-component
Ovate	PF04844.13	gi|410670644|ref|YP_006923015.1|	-	0.019	14.9	0.4	0.6	10.1	0.0	2.5	2	0	0	2	2	2	0	Transcriptional	repressor,	ovate
DUF1847	PF08901.11	gi|410670644|ref|YP_006923015.1|	-	0.041	13.5	0.0	0.071	12.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1847)
ArAE_1_C	PF11728.8	gi|410670644|ref|YP_006923015.1|	-	0.08	12.9	0.0	0.16	11.9	0.0	1.5	1	0	0	1	1	1	0	Putative	aromatic	acid	exporter	C-terminal	domain
BcrAD_BadFG	PF01869.20	gi|410670645|ref|YP_006923016.1|	-	2.2e-63	214.3	4.6	2.6e-63	214.1	4.6	1.1	1	0	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
Peptidase_M22	PF00814.25	gi|410670645|ref|YP_006923016.1|	-	0.00039	20.2	0.1	0.00056	19.7	0.1	1.2	1	0	0	1	1	1	1	Glycoprotease	family
Carbam_trans_N	PF02543.15	gi|410670645|ref|YP_006923016.1|	-	0.016	14.9	0.1	0.023	14.4	0.1	1.3	1	0	0	1	1	1	0	Carbamoyltransferase	N-terminus
FtsA	PF14450.6	gi|410670645|ref|YP_006923016.1|	-	0.019	15.4	3.5	0.84	10.1	0.9	2.8	2	1	0	2	2	2	0	Cell	division	protein	FtsA
Hydant_A_N	PF05378.13	gi|410670645|ref|YP_006923016.1|	-	0.079	12.7	0.6	0.15	11.8	0.6	1.5	1	1	0	1	1	1	0	Hydantoinase/oxoprolinase	N-terminal	region
FGGY_C	PF02782.16	gi|410670645|ref|YP_006923016.1|	-	0.091	12.5	0.3	0.44	10.2	0.4	1.9	2	0	0	2	2	2	0	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
UbiA	PF01040.18	gi|410670646|ref|YP_006923017.1|	-	3e-34	118.5	14.2	3.5e-34	118.2	14.2	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
Cupin_2	PF07883.11	gi|410670647|ref|YP_006923018.1|	-	5.6e-16	58.0	0.0	7.4e-16	57.6	0.0	1.2	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|410670647|ref|YP_006923018.1|	-	0.0019	18.1	0.0	0.0025	17.7	0.0	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
CENP-C_C	PF11699.8	gi|410670647|ref|YP_006923018.1|	-	0.01	16.0	0.0	0.014	15.6	0.0	1.2	1	0	0	1	1	1	0	Mif2/CENP-C	like
MannoseP_isomer	PF01050.18	gi|410670647|ref|YP_006923018.1|	-	0.011	15.6	0.1	0.013	15.4	0.1	1.1	1	0	0	1	1	1	0	Mannose-6-phosphate	isomerase
Cupin_3	PF05899.12	gi|410670647|ref|YP_006923018.1|	-	0.019	14.6	0.0	0.029	14.0	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
Cupin_6	PF12852.7	gi|410670647|ref|YP_006923018.1|	-	0.12	12.1	0.0	0.13	12.0	0.0	1.1	1	0	0	1	1	1	0	Cupin
pPIWI_RE_REase	PF18154.1	gi|410670648|ref|YP_006923019.1|	-	0.0088	16.0	0.0	0.0099	15.8	0.0	1.0	1	0	0	1	1	1	1	REase	associating	with	pPIWI_RE
dUTPase	PF00692.19	gi|410670650|ref|YP_006923021.1|	-	7.7e-10	38.5	0.0	1.1e-09	38.1	0.0	1.2	1	0	0	1	1	1	1	dUTPase
DCD	PF06559.11	gi|410670650|ref|YP_006923021.1|	-	0.00074	18.4	0.0	0.001	17.9	0.0	1.3	1	0	0	1	1	1	1	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
DeoC	PF01791.9	gi|410670651|ref|YP_006923022.1|	-	8.8e-63	212.1	0.1	1e-62	211.9	0.1	1.0	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
OMPdecase	PF00215.24	gi|410670651|ref|YP_006923022.1|	-	1.6e-05	24.6	0.2	3.8e-05	23.4	0.1	1.5	2	0	0	2	2	2	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
TMP-TENI	PF02581.17	gi|410670651|ref|YP_006923022.1|	-	0.026	13.9	0.0	1.5	8.1	0.0	2.3	1	1	0	2	2	2	0	Thiamine	monophosphate	synthase
AP_endonuc_2	PF01261.24	gi|410670651|ref|YP_006923022.1|	-	0.034	13.6	0.0	0.34	10.3	0.1	2.0	1	1	1	2	2	2	0	Xylose	isomerase-like	TIM	barrel
Peptidase_C24	PF03510.14	gi|410670651|ref|YP_006923022.1|	-	0.046	14.2	0.0	0.088	13.3	0.0	1.5	1	0	0	1	1	1	0	2C	endopeptidase	(C24)	cysteine	protease	family
PEP_mutase	PF13714.6	gi|410670651|ref|YP_006923022.1|	-	0.14	11.6	0.3	10	5.5	0.0	2.5	2	1	1	3	3	3	0	Phosphoenolpyruvate	phosphomutase
HGTP_anticodon	PF03129.20	gi|410670653|ref|YP_006923024.1|	-	2.9e-20	72.2	0.2	2.4e-19	69.3	0.0	2.4	2	0	0	2	2	2	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|410670653|ref|YP_006923024.1|	-	8.2e-10	38.9	0.1	5.8e-09	36.2	0.1	2.2	1	1	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
zf-C2H2	PF00096.26	gi|410670653|ref|YP_006923024.1|	-	0.045	14.2	2.0	0.075	13.5	0.4	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
tRNA-synt_2	PF00152.20	gi|410670653|ref|YP_006923024.1|	-	0.13	11.3	0.3	3.8	6.5	0.1	2.4	2	1	0	2	2	2	0	tRNA	synthetases	class	II	(D,	K	and	N)
ERCC4	PF02732.15	gi|410670654|ref|YP_006923025.1|	-	1.9e-29	102.9	1.0	9e-29	100.7	0.0	2.5	3	0	0	3	3	3	1	ERCC4	domain
Helicase_C	PF00271.31	gi|410670654|ref|YP_006923025.1|	-	4.7e-24	84.9	0.2	2.7e-20	72.7	0.0	3.0	3	0	0	3	3	3	2	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|410670654|ref|YP_006923025.1|	-	1.3e-16	60.8	0.0	3.2e-16	59.6	0.0	1.6	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|410670654|ref|YP_006923025.1|	-	1.4e-14	54.4	0.0	4.1e-14	52.9	0.0	1.8	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
HHH_5	PF14520.6	gi|410670654|ref|YP_006923025.1|	-	5.5e-13	49.3	0.3	3.9e-11	43.4	0.1	2.6	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|410670654|ref|YP_006923025.1|	-	6.5e-12	45.4	1.2	4.6e-11	42.7	0.0	2.9	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
HHH	PF00633.23	gi|410670654|ref|YP_006923025.1|	-	2.5e-07	30.2	0.1	5.2e-06	26.1	0.1	2.8	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
5_3_exonuc	PF01367.20	gi|410670654|ref|YP_006923025.1|	-	0.00079	20.0	0.3	0.0091	16.6	0.1	2.9	2	1	0	2	2	1	1	5'-3'	exonuclease,	C-terminal	SAM	fold
Organ_specific	PF10950.8	gi|410670654|ref|YP_006923025.1|	-	0.0061	17.3	0.4	0.049	14.3	0.3	2.5	2	0	0	2	2	2	1	Organ	specific	protein
HHH_8	PF14716.6	gi|410670654|ref|YP_006923025.1|	-	0.013	15.9	0.0	0.058	13.8	0.0	2.3	1	0	0	1	1	1	0	Helix-hairpin-helix	domain
TusA	PF01206.17	gi|410670654|ref|YP_006923025.1|	-	0.073	12.9	0.1	24	4.9	0.0	3.4	4	0	0	4	4	4	0	Sulfurtransferase	TusA
COX6A	PF02046.15	gi|410670654|ref|YP_006923025.1|	-	0.098	13.1	0.0	0.24	11.9	0.0	1.6	1	0	0	1	1	1	0	Cytochrome	c	oxidase	subunit	VIa
HHH_3	PF12836.7	gi|410670654|ref|YP_006923025.1|	-	0.11	12.8	0.0	0.73	10.1	0.0	2.5	2	1	0	2	2	1	0	Helix-hairpin-helix	motif
Auto_anti-p27	PF06677.12	gi|410670655|ref|YP_006923026.1|	-	1.9e-12	47.1	1.5	2.7e-12	46.6	1.5	1.3	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DZR	PF12773.7	gi|410670655|ref|YP_006923026.1|	-	0.0013	18.7	1.1	0.002	18.1	1.1	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|410670655|ref|YP_006923026.1|	-	0.029	13.8	1.8	2.3	7.8	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2072	PF09845.9	gi|410670655|ref|YP_006923026.1|	-	0.07	13.4	0.1	0.11	12.7	0.1	1.5	1	1	0	1	1	1	0	Zn-ribbon	containing	protein
UPF0147	PF03685.13	gi|410670656|ref|YP_006923027.1|	-	7.5e-34	115.6	0.4	8.4e-34	115.5	0.4	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0147)
Translin	PF01997.16	gi|410670657|ref|YP_006923028.1|	-	1.1e-07	32.1	0.0	7.8e-07	29.3	0.0	1.9	1	1	0	1	1	1	1	Translin	family
tRNA-synt_2d	PF01409.20	gi|410670658|ref|YP_006923029.1|	-	2.2e-56	191.1	0.0	1e-51	175.8	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	II	core	domain	(F)
SepRS_C	PF18006.1	gi|410670658|ref|YP_006923029.1|	-	9e-14	51.3	0.1	1.9e-13	50.2	0.1	1.6	1	0	0	1	1	1	1	O-phosphoseryl-tRNA	synthetase	C-terminal	domain
tRNA_synthFbeta	PF17759.1	gi|410670658|ref|YP_006923029.1|	-	5.3e-10	39.1	0.0	9.3e-07	28.5	0.0	2.2	2	0	0	2	2	2	2	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
Lambda_Bor	PF06291.11	gi|410670658|ref|YP_006923029.1|	-	0.015	15.3	0.0	0.034	14.2	0.0	1.5	1	0	0	1	1	1	0	Bor	protein
tRNA-synt_2e	PF02091.15	gi|410670658|ref|YP_006923029.1|	-	0.031	13.5	0.0	0.049	12.9	0.0	1.3	1	0	0	1	1	1	0	Glycyl-tRNA	synthetase	alpha	subunit
tRNA-synt_2	PF00152.20	gi|410670658|ref|YP_006923029.1|	-	0.11	11.5	0.0	2.2	7.3	0.0	2.4	2	0	0	2	2	2	0	tRNA	synthetases	class	II	(D,	K	and	N)
Endonuclease_5	PF04493.14	gi|410670659|ref|YP_006923030.1|	-	2.7e-59	200.2	0.0	3.2e-59	199.9	0.0	1.0	1	0	0	1	1	1	1	Endonuclease	V
DUF99	PF01949.16	gi|410670659|ref|YP_006923030.1|	-	0.11	11.8	0.0	0.29	10.5	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF99
DUF473	PF04322.12	gi|410670660|ref|YP_006923031.1|	-	2.2e-41	140.4	0.0	2.5e-41	140.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF473)
MerR_2	PF13591.6	gi|410670660|ref|YP_006923031.1|	-	0.0061	16.4	0.0	0.03	14.2	0.0	1.9	2	0	0	2	2	2	1	MerR	HTH	family	regulatory	protein
PAC2	PF09754.9	gi|410670661|ref|YP_006923032.1|	-	6.9e-52	176.5	0.5	7.9e-52	176.4	0.5	1.0	1	0	0	1	1	1	1	PAC2	family
Ribosomal_L9_C	PF03948.14	gi|410670661|ref|YP_006923032.1|	-	0.0099	16.3	0.8	3.1	8.3	0.1	2.7	2	1	0	2	2	2	2	Ribosomal	protein	L9,	C-terminal	domain
UTP15_C	PF09384.10	gi|410670661|ref|YP_006923032.1|	-	0.11	12.2	0.1	0.33	10.6	0.0	1.7	2	0	0	2	2	2	0	UTP15	C	terminal
PK_C	PF02887.16	gi|410670662|ref|YP_006923033.1|	-	2.5e-15	56.7	0.5	3.2e-15	56.4	0.5	1.1	1	0	0	1	1	1	1	Pyruvate	kinase,	alpha/beta	domain
Asp_Glu_race	PF01177.22	gi|410670662|ref|YP_006923033.1|	-	0.057	13.3	0.0	0.077	12.8	0.0	1.2	1	0	0	1	1	1	0	Asp/Glu/Hydantoin	racemase
MTD	PF01993.18	gi|410670664|ref|YP_006923035.1|	-	5.3e-124	413.0	1.9	5.9e-124	412.8	1.9	1.0	1	0	0	1	1	1	1	methylene-5,6,7,8-tetrahydromethanopterin	dehydrogenase
HAD	PF12710.7	gi|410670665|ref|YP_006923036.1|	-	8.5e-21	75.2	0.0	1.2e-20	74.8	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|410670665|ref|YP_006923036.1|	-	1.4e-14	54.9	0.0	2e-14	54.4	0.0	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|410670665|ref|YP_006923036.1|	-	1.2e-13	51.4	0.0	2.4e-12	47.2	0.0	2.3	2	1	1	3	3	3	1	haloacid	dehalogenase-like	hydrolase
Put_Phosphatase	PF06888.12	gi|410670665|ref|YP_006923036.1|	-	1.7e-06	27.6	0.0	0.045	13.2	0.0	2.1	2	0	0	2	2	2	2	Putative	Phosphatase
HAD_2	PF13419.6	gi|410670665|ref|YP_006923036.1|	-	1.4e-05	25.2	0.1	0.1	12.7	0.0	2.4	3	0	0	3	3	3	2	Haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|410670665|ref|YP_006923036.1|	-	0.0047	16.5	0.0	0.01	15.4	0.0	1.5	1	0	0	1	1	1	1	Sucrose-6F-phosphate	phosphohydrolase
Sulfatase	PF00884.23	gi|410670665|ref|YP_006923036.1|	-	0.033	13.6	0.0	0.035	13.5	0.0	1.1	1	0	0	1	1	1	0	Sulfatase
HHH	PF00633.23	gi|410670665|ref|YP_006923036.1|	-	0.047	13.6	0.2	0.13	12.2	0.1	1.8	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
DUF4279	PF14106.6	gi|410670665|ref|YP_006923036.1|	-	0.095	12.9	0.0	0.21	11.8	0.0	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4279)
Golgin_A5	PF09787.9	gi|410670666|ref|YP_006923037.1|	-	0.048	13.1	34.8	0.077	12.5	16.0	2.2	1	1	1	2	2	2	0	Golgin	subfamily	A	member	5
I_LWEQ	PF01608.17	gi|410670666|ref|YP_006923037.1|	-	0.3	11.3	26.9	0.14	12.4	7.2	3.1	1	1	2	3	3	3	0	I/LWEQ	domain
DUF2935	PF11155.8	gi|410670666|ref|YP_006923037.1|	-	0.43	10.9	16.3	90	3.4	0.5	3.8	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF2935)
OmpH	PF03938.14	gi|410670666|ref|YP_006923037.1|	-	0.69	10.2	47.2	0.08	13.3	13.0	3.4	1	1	2	3	3	3	0	Outer	membrane	protein	(OmpH-like)
Syntaxin_2	PF14523.6	gi|410670666|ref|YP_006923037.1|	-	2.2	8.7	30.2	0.12	12.7	9.5	3.1	1	1	1	3	3	3	0	Syntaxin-like	protein
DUF1771	PF08590.10	gi|410670666|ref|YP_006923037.1|	-	5.3	7.5	19.1	2.6	8.5	2.1	4.4	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF1771)
Sec34	PF04136.15	gi|410670666|ref|YP_006923037.1|	-	7.3	6.5	20.8	1.5	8.6	5.1	3.0	2	1	1	3	3	3	0	Sec34-like	family
Com_YlbF	PF06133.11	gi|410670666|ref|YP_006923037.1|	-	9.7	6.9	40.1	2	9.1	10.5	3.9	1	1	3	4	4	4	0	Control	of	competence	regulator	ComK,	YlbF/YmcA
SPASM	PF13186.6	gi|410670667|ref|YP_006923038.1|	-	0.053	14.0	0.2	0.094	13.2	0.2	1.5	1	1	0	1	1	1	0	Iron-sulfur	cluster-binding	domain
GyrI-like	PF06445.15	gi|410670669|ref|YP_006923040.1|	-	3.4e-10	40.4	0.0	3.5e-10	40.4	0.0	1.0	1	0	0	1	1	1	1	GyrI-like	small	molecule	binding	domain
DUF3852	PF12963.7	gi|410670670|ref|YP_006923041.1|	-	1.4e-15	57.5	1.3	2.2e-15	56.9	1.3	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3852)
Carot_N	PF09150.10	gi|410670670|ref|YP_006923041.1|	-	0.17	11.8	0.0	0.18	11.7	0.0	1.0	1	0	0	1	1	1	0	Orange	carotenoid	protein,	N-terminal
Radical_SAM	PF04055.21	gi|410670671|ref|YP_006923042.1|	-	1.2e-17	64.8	0.0	1.7e-17	64.3	0.0	1.2	1	0	0	1	1	1	1	Radical	SAM	superfamily
SPASM	PF13186.6	gi|410670671|ref|YP_006923042.1|	-	6e-07	29.9	0.0	1.3e-06	28.8	0.0	1.6	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
Fer4_12	PF13353.6	gi|410670671|ref|YP_006923042.1|	-	0.0016	18.7	0.0	0.0025	18.1	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|410670671|ref|YP_006923042.1|	-	0.0025	17.9	0.0	0.0052	16.9	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
HI0933_like	PF03486.14	gi|410670672|ref|YP_006923043.1|	-	4e-10	39.0	0.8	1.2e-06	27.6	0.7	2.3	2	0	0	2	2	2	2	HI0933-like	protein
Lycopene_cycl	PF05834.12	gi|410670672|ref|YP_006923043.1|	-	6.7e-10	38.6	0.0	8.9e-10	38.2	0.0	1.1	1	0	0	1	1	1	1	Lycopene	cyclase	protein
Pyr_redox_2	PF07992.14	gi|410670672|ref|YP_006923043.1|	-	1.8e-09	37.2	0.2	0.00072	18.9	0.1	2.3	1	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|410670672|ref|YP_006923043.1|	-	4.1e-09	36.5	0.1	0.0041	16.7	0.0	2.7	2	1	0	3	3	3	2	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|410670672|ref|YP_006923043.1|	-	4.7e-09	35.9	0.0	5e-08	32.5	0.0	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|410670672|ref|YP_006923043.1|	-	6.4e-07	28.9	0.0	0.011	15.0	0.0	2.1	2	0	0	2	2	2	2	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|410670672|ref|YP_006923043.1|	-	8.4e-07	28.7	0.7	1.5e-06	27.9	0.7	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|410670672|ref|YP_006923043.1|	-	9.7e-06	24.9	0.0	2.2e-05	23.7	0.0	1.6	2	0	0	2	2	2	1	FAD	binding	domain
Thi4	PF01946.17	gi|410670672|ref|YP_006923043.1|	-	0.00089	18.6	0.0	0.0016	17.8	0.0	1.4	1	0	0	1	1	1	1	Thi4	family
GIDA	PF01134.22	gi|410670672|ref|YP_006923043.1|	-	0.00098	18.3	0.0	0.0017	17.5	0.0	1.4	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Trp_halogenase	PF04820.14	gi|410670672|ref|YP_006923043.1|	-	0.0065	15.4	0.2	0.25	10.1	0.0	2.1	2	0	0	2	2	2	1	Tryptophan	halogenase
NAD_binding_8	PF13450.6	gi|410670672|ref|YP_006923043.1|	-	0.011	15.9	0.1	0.039	14.2	0.1	2.0	1	1	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
AlaDh_PNT_C	PF01262.21	gi|410670672|ref|YP_006923043.1|	-	0.026	13.8	0.0	0.047	13.0	0.0	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox	PF00070.27	gi|410670672|ref|YP_006923043.1|	-	0.13	12.8	0.0	0.57	10.8	0.0	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
UbiA	PF01040.18	gi|410670673|ref|YP_006923044.1|	-	4.3e-39	134.3	17.7	5.3e-39	134.0	17.7	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
DUF1118	PF06549.12	gi|410670673|ref|YP_006923044.1|	-	0.087	13.2	0.9	0.31	11.4	0.9	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1118)
TGT	PF01702.18	gi|410670674|ref|YP_006923045.1|	-	6.2e-87	292.0	0.0	8.5e-87	291.6	0.0	1.1	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
DUF5591	PF17884.1	gi|410670674|ref|YP_006923045.1|	-	0.071	13.0	0.0	0.17	11.7	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5591)
DUF21	PF01595.20	gi|410670676|ref|YP_006923047.1|	-	6e-35	120.5	1.8	8.3e-35	120.1	1.8	1.1	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
eIF-1a	PF01176.19	gi|410670677|ref|YP_006923048.1|	-	5.3e-17	61.4	0.3	6.5e-17	61.1	0.3	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
RIO1	PF01163.22	gi|410670678|ref|YP_006923049.1|	-	3.4e-59	199.6	0.3	5.4e-59	199.0	0.0	1.4	2	0	0	2	2	2	1	RIO1	family
Pkinase	PF00069.25	gi|410670678|ref|YP_006923049.1|	-	4.6e-06	26.2	0.0	8.2e-06	25.4	0.0	1.4	1	1	0	1	1	1	1	Protein	kinase	domain
Pkinase_fungal	PF17667.1	gi|410670678|ref|YP_006923049.1|	-	0.00017	20.5	0.0	0.00057	18.8	0.0	1.7	1	1	1	2	2	2	1	Fungal	protein	kinase
Kdo	PF06293.14	gi|410670678|ref|YP_006923049.1|	-	0.00048	19.6	0.0	0.0086	15.5	0.0	2.1	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
APH	PF01636.23	gi|410670678|ref|YP_006923049.1|	-	0.008	16.1	0.0	0.054	13.4	0.0	2.0	1	1	1	2	2	2	1	Phosphotransferase	enzyme	family
Choline_kinase	PF01633.20	gi|410670678|ref|YP_006923049.1|	-	0.049	13.2	0.0	0.14	11.7	0.0	1.7	2	0	0	2	2	2	0	Choline/ethanolamine	kinase
KH_1	PF00013.29	gi|410670679|ref|YP_006923050.1|	-	2.9e-13	49.4	9.1	3.7e-08	33.1	0.2	2.3	2	0	0	2	2	2	2	KH	domain
KH_2	PF07650.17	gi|410670679|ref|YP_006923050.1|	-	0.024	14.4	8.9	0.43	10.4	0.2	2.4	2	0	0	2	2	2	0	KH	domain
KH_4	PF13083.6	gi|410670679|ref|YP_006923050.1|	-	0.15	12.0	2.4	4.4	7.3	0.2	2.9	2	1	0	2	2	2	0	KH	domain
KH_5	PF13184.6	gi|410670679|ref|YP_006923050.1|	-	0.35	11.0	2.7	5.2	7.2	0.1	2.4	2	0	0	2	2	2	0	NusA-like	KH	domain
DUF1614	PF07758.11	gi|410670680|ref|YP_006923051.1|	-	4.4e-36	124.5	13.7	6.4e-36	123.9	13.7	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1614)
ATPase	PF06745.13	gi|410670681|ref|YP_006923052.1|	-	2.7e-44	151.2	0.0	1.9e-43	148.5	0.0	2.0	1	1	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|410670681|ref|YP_006923052.1|	-	2.2e-07	30.6	0.0	4.9e-07	29.5	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
RecA	PF00154.21	gi|410670681|ref|YP_006923052.1|	-	4.2e-07	29.7	0.0	5.9e-07	29.2	0.0	1.2	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
DnaB_C	PF03796.15	gi|410670681|ref|YP_006923052.1|	-	1.2e-06	28.1	0.0	1.9e-06	27.4	0.0	1.4	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
GvpD	PF07088.11	gi|410670681|ref|YP_006923052.1|	-	3.9e-05	22.5	0.0	0.059	12.0	0.0	2.2	2	0	0	2	2	2	2	GvpD	gas	vesicle	protein
IstB_IS21	PF01695.17	gi|410670681|ref|YP_006923052.1|	-	0.00032	20.5	0.0	0.00064	19.5	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_24	PF13479.6	gi|410670681|ref|YP_006923052.1|	-	0.00052	19.8	0.0	0.0009	19.0	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|410670681|ref|YP_006923052.1|	-	0.00065	20.2	0.0	0.0018	18.8	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
Rad51	PF08423.11	gi|410670681|ref|YP_006923052.1|	-	0.0015	17.9	0.0	0.002	17.4	0.0	1.2	1	0	0	1	1	1	1	Rad51
AAA_19	PF13245.6	gi|410670681|ref|YP_006923052.1|	-	0.0022	18.4	0.0	0.0043	17.4	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_14	PF13173.6	gi|410670681|ref|YP_006923052.1|	-	0.0027	17.7	0.0	0.0078	16.3	0.0	1.9	2	0	0	2	2	1	1	AAA	domain
T2SSE	PF00437.20	gi|410670681|ref|YP_006923052.1|	-	0.0039	16.3	0.1	0.0076	15.3	0.0	1.5	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
AAA_33	PF13671.6	gi|410670681|ref|YP_006923052.1|	-	0.0039	17.3	0.3	0.014	15.6	0.1	2.0	2	0	0	2	2	2	1	AAA	domain
PAXNEB	PF05625.11	gi|410670681|ref|YP_006923052.1|	-	0.0057	15.9	0.0	0.011	14.9	0.0	1.3	1	0	0	1	1	1	1	PAXNEB	protein
AAA_7	PF12775.7	gi|410670681|ref|YP_006923052.1|	-	0.0095	15.5	0.0	0.02	14.4	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
NACHT	PF05729.12	gi|410670681|ref|YP_006923052.1|	-	0.015	15.2	0.0	0.033	14.1	0.0	1.5	1	1	0	1	1	1	0	NACHT	domain
AAA_30	PF13604.6	gi|410670681|ref|YP_006923052.1|	-	0.017	14.9	0.0	0.028	14.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|410670681|ref|YP_006923052.1|	-	0.022	15.1	0.0	0.055	13.7	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
AAA_16	PF13191.6	gi|410670681|ref|YP_006923052.1|	-	0.033	14.6	0.0	0.065	13.6	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
NTPase_1	PF03266.15	gi|410670681|ref|YP_006923052.1|	-	0.034	14.1	0.0	0.057	13.3	0.0	1.4	1	0	0	1	1	1	0	NTPase
AAA	PF00004.29	gi|410670681|ref|YP_006923052.1|	-	0.039	14.4	0.0	0.081	13.3	0.0	1.7	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_11	PF13086.6	gi|410670681|ref|YP_006923052.1|	-	0.046	13.5	0.0	0.12	12.2	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_5	PF07728.14	gi|410670681|ref|YP_006923052.1|	-	0.052	13.6	0.0	0.1	12.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
MEDS	PF14417.6	gi|410670681|ref|YP_006923052.1|	-	0.053	13.4	0.0	0.12	12.1	0.0	1.6	1	0	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
DUF2075	PF09848.9	gi|410670681|ref|YP_006923052.1|	-	0.057	12.7	0.0	0.085	12.1	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_28	PF13521.6	gi|410670681|ref|YP_006923052.1|	-	0.072	13.3	0.0	0.29	11.4	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
PPV_E1_C	PF00519.17	gi|410670681|ref|YP_006923052.1|	-	0.09	11.6	0.0	0.15	10.9	0.0	1.3	1	0	0	1	1	1	0	Papillomavirus	helicase
Eco57I	PF07669.11	gi|410670681|ref|YP_006923052.1|	-	0.1	13.1	0.0	0.2	12.2	0.0	1.5	1	0	0	1	1	1	0	Eco57I	restriction-modification	methylase
cobW	PF02492.19	gi|410670681|ref|YP_006923052.1|	-	0.14	11.7	0.4	0.78	9.3	0.0	2.3	3	0	0	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
Sigma54_activat	PF00158.26	gi|410670681|ref|YP_006923052.1|	-	0.15	11.8	0.0	1.1	8.9	0.0	2.0	2	0	0	2	2	2	0	Sigma-54	interaction	domain
DUF1846	PF08903.11	gi|410670681|ref|YP_006923052.1|	-	0.16	10.5	0.0	0.35	9.3	0.0	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1846)
RNA_helicase	PF00910.22	gi|410670681|ref|YP_006923052.1|	-	0.18	12.2	0.0	0.73	10.2	0.0	2.0	2	0	0	2	2	2	0	RNA	helicase
Amidohydro_1	PF01979.20	gi|410670682|ref|YP_006923053.1|	-	1.1e-22	80.9	0.0	1.8e-22	80.1	0.0	1.3	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|410670682|ref|YP_006923053.1|	-	9.8e-16	58.3	0.1	4.1e-08	33.1	0.0	2.6	3	0	0	3	3	3	2	Amidohydrolase	family
PBP_like_2	PF12849.7	gi|410670683|ref|YP_006923054.1|	-	2e-47	162.2	1.1	4.6e-47	161.0	1.1	1.5	1	1	0	1	1	1	1	PBP	superfamily	domain
PBP_like	PF12727.7	gi|410670683|ref|YP_006923054.1|	-	2.3e-20	72.6	0.0	2.9e-20	72.2	0.0	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_11	PF13531.6	gi|410670683|ref|YP_006923054.1|	-	1.1e-08	35.2	0.0	2e-08	34.3	0.0	1.4	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|410670683|ref|YP_006923054.1|	-	0.025	14.0	0.0	0.04	13.3	0.0	1.3	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
BPD_transp_1	PF00528.22	gi|410670684|ref|YP_006923055.1|	-	2.1e-22	79.7	12.1	2.1e-22	79.7	12.1	2.1	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Gemini_mov	PF01708.16	gi|410670684|ref|YP_006923055.1|	-	0.47	10.2	2.0	1.2	9.0	2.0	1.6	1	0	0	1	1	1	0	Geminivirus	putative	movement	protein
BPD_transp_1	PF00528.22	gi|410670685|ref|YP_006923056.1|	-	2.8e-27	95.7	17.7	2.8e-27	95.7	17.7	2.4	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
TssN	PF17555.2	gi|410670685|ref|YP_006923056.1|	-	0.86	8.9	11.4	0.78	9.1	1.0	3.2	3	1	0	3	3	3	0	Type	VI	secretion	system,	TssN
ABC_tran	PF00005.27	gi|410670686|ref|YP_006923057.1|	-	1.1e-28	100.4	0.0	1.5e-28	100.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|410670686|ref|YP_006923057.1|	-	1.3e-11	44.8	0.0	4.5e-05	23.4	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|410670686|ref|YP_006923057.1|	-	3.1e-07	30.1	0.0	8.5e-05	22.1	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|410670686|ref|YP_006923057.1|	-	2.7e-05	24.1	0.1	8.2e-05	22.5	0.0	1.5	1	1	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|410670686|ref|YP_006923057.1|	-	0.00027	20.6	0.0	0.00055	19.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|410670686|ref|YP_006923057.1|	-	0.00049	20.7	0.0	0.0011	19.5	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|410670686|ref|YP_006923057.1|	-	0.00054	19.9	0.0	0.001	19.0	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_16	PF13191.6	gi|410670686|ref|YP_006923057.1|	-	0.0087	16.5	0.0	0.014	15.8	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|410670686|ref|YP_006923057.1|	-	0.015	15.5	0.0	0.04	14.2	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Rad17	PF03215.15	gi|410670686|ref|YP_006923057.1|	-	0.019	14.9	0.0	0.031	14.2	0.0	1.4	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_33	PF13671.6	gi|410670686|ref|YP_006923057.1|	-	0.022	14.9	0.0	0.033	14.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|410670686|ref|YP_006923057.1|	-	0.037	13.6	0.0	0.072	12.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|410670686|ref|YP_006923057.1|	-	0.057	13.9	0.0	0.4	11.1	0.0	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.22	gi|410670686|ref|YP_006923057.1|	-	0.13	12.6	0.0	0.35	11.3	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
AAA_18	PF13238.6	gi|410670686|ref|YP_006923057.1|	-	0.17	12.4	0.0	0.32	11.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
PPV_E1_C	PF00519.17	gi|410670686|ref|YP_006923057.1|	-	0.21	10.4	0.1	0.41	9.4	0.0	1.3	1	1	0	1	1	1	0	Papillomavirus	helicase
PhoU	PF01895.19	gi|410670687|ref|YP_006923058.1|	-	1.1e-41	141.2	14.2	5.3e-22	78.1	4.3	2.0	2	0	0	2	2	2	2	PhoU	domain
Laminin_I	PF06008.14	gi|410670687|ref|YP_006923058.1|	-	0.039	13.7	0.2	0.069	12.8	0.2	1.3	1	0	0	1	1	1	0	Laminin	Domain	I
DNA_pol_B	PF00136.21	gi|410670688|ref|YP_006923059.1|	-	1.4e-109	366.8	0.0	1.9e-109	366.4	0.0	1.1	1	0	0	1	1	1	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.19	gi|410670688|ref|YP_006923059.1|	-	1.3e-54	185.6	0.0	1.9e-54	185.0	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
DNA_pol_B_exo2	PF10108.9	gi|410670688|ref|YP_006923059.1|	-	0.034	13.8	0.0	0.079	12.6	0.0	1.5	1	0	0	1	1	1	0	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
DNA_pol_B_2	PF03175.13	gi|410670688|ref|YP_006923059.1|	-	0.042	12.7	0.1	0.11	11.3	0.1	1.6	1	1	0	1	1	1	0	DNA	polymerase	type	B,	organellar	and	viral
HetR_C	PF18460.1	gi|410670688|ref|YP_006923059.1|	-	0.45	10.5	3.4	7.9	6.5	0.3	2.5	2	0	0	2	2	2	0	Heterocyst	differentiation	regulator	C-terminal	Hood	domain
LPAM_2	PF13627.6	gi|410670689|ref|YP_006923060.1|	-	0.77	9.7	2.1	1.2	9.1	2.1	1.3	1	0	0	1	1	1	0	Prokaryotic	lipoprotein-attachment	site
S-layer	PF07752.11	gi|410670690|ref|YP_006923061.1|	-	3.1e-232	767.1	34.0	7e-78	261.2	6.4	3.0	3	0	0	3	3	3	3	S-layer	protein
PGF-CTERM	PF18204.1	gi|410670690|ref|YP_006923061.1|	-	4.4e-11	42.4	0.6	9.4e-11	41.3	0.6	1.6	1	0	0	1	1	1	1	PGF-CTERM	motif
NOP19	PF10863.8	gi|410670690|ref|YP_006923061.1|	-	4.7e-05	23.2	0.0	7.5	6.4	0.0	3.3	3	0	0	3	3	3	3	Nucleolar	protein	19
Myb_DNA-bind_2	PF08914.11	gi|410670690|ref|YP_006923061.1|	-	7.8e-05	22.8	0.5	12	6.2	0.0	3.6	3	0	0	3	3	3	3	Rap1	Myb	domain
PQQ	PF01011.21	gi|410670690|ref|YP_006923061.1|	-	0.0002	21.2	3.5	1.2	9.2	0.1	4.1	3	0	0	3	3	3	2	PQQ	enzyme	repeat
DUF4167	PF13763.6	gi|410670690|ref|YP_006923061.1|	-	0.0039	17.3	0.0	43	4.4	0.0	3.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4167)
FTP	PF07504.13	gi|410670690|ref|YP_006923061.1|	-	0.011	15.5	0.0	59	3.6	0.0	3.7	3	0	0	3	3	3	0	Fungalysin/Thermolysin	Propeptide	Motif
Apocytochr_F_N	PF16639.5	gi|410670690|ref|YP_006923061.1|	-	0.026	14.8	0.0	75	3.6	0.0	3.3	3	0	0	3	3	3	0	Apocytochrome	F,	N-terminal
IlvN	PF07991.12	gi|410670690|ref|YP_006923061.1|	-	0.1	12.2	0.0	88	2.6	0.0	3.4	3	0	0	3	3	3	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
ZoocinA_TRD	PF16775.5	gi|410670690|ref|YP_006923061.1|	-	0.34	11.1	6.7	32	4.8	0.2	4.3	3	0	0	3	3	3	0	Target	recognition	domain	of	lytic	exoenzyme
Phage_sheath_1C	PF17482.2	gi|410670690|ref|YP_006923061.1|	-	0.66	10.0	7.0	42	4.2	0.0	4.8	6	0	0	6	6	6	0	Phage	tail	sheath	C-terminal	domain
NID	PF07292.13	gi|410670690|ref|YP_006923061.1|	-	1.2	9.8	6.0	86	3.9	0.1	3.6	3	0	0	3	3	3	0	Nmi/IFP	35	domain	(NID)
DUF3970	PF13113.6	gi|410670690|ref|YP_006923061.1|	-	1.3	9.3	3.7	38	4.6	0.1	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3970)
ATPase	PF06745.13	gi|410670691|ref|YP_006923062.1|	-	1.7e-73	246.8	0.4	2e-73	246.6	0.4	1.0	1	0	0	1	1	1	1	KaiC
GvpD	PF07088.11	gi|410670691|ref|YP_006923062.1|	-	9.3e-06	24.5	0.1	1.2e-05	24.2	0.1	1.0	1	0	0	1	1	1	1	GvpD	gas	vesicle	protein
ResIII	PF04851.15	gi|410670691|ref|YP_006923062.1|	-	0.0067	16.4	0.0	0.011	15.7	0.0	1.4	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_25	PF13481.6	gi|410670691|ref|YP_006923062.1|	-	0.0089	15.6	0.0	0.026	14.1	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.15	gi|410670691|ref|YP_006923062.1|	-	0.011	15.1	0.0	0.018	14.4	0.0	1.6	1	1	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
Rad51	PF08423.11	gi|410670691|ref|YP_006923062.1|	-	0.082	12.2	0.0	0.12	11.6	0.0	1.4	1	0	0	1	1	1	0	Rad51
MEDS	PF14417.6	gi|410670691|ref|YP_006923062.1|	-	0.085	12.7	0.0	0.14	12.0	0.0	1.3	1	0	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
ATPase	PF06745.13	gi|410670692|ref|YP_006923063.1|	-	1.6e-72	243.6	0.0	3.8e-44	150.8	0.0	2.7	2	1	0	2	2	2	2	KaiC
DnaB_C	PF03796.15	gi|410670692|ref|YP_006923063.1|	-	1.5e-09	37.5	0.0	3.1e-05	23.4	0.0	2.2	2	0	0	2	2	2	2	DnaB-like	helicase	C	terminal	domain
AAA_25	PF13481.6	gi|410670692|ref|YP_006923063.1|	-	4e-07	29.8	0.0	0.049	13.2	0.0	2.9	2	1	0	2	2	2	2	AAA	domain
Sigma54_activat	PF00158.26	gi|410670692|ref|YP_006923063.1|	-	0.0016	18.2	0.1	0.36	10.5	0.0	2.7	3	0	0	3	3	3	1	Sigma-54	interaction	domain
Rad51	PF08423.11	gi|410670692|ref|YP_006923063.1|	-	0.002	17.5	0.1	0.9	8.8	0.0	2.2	2	0	0	2	2	2	2	Rad51
GvpD	PF07088.11	gi|410670692|ref|YP_006923063.1|	-	0.002	16.8	0.7	1.9	7.0	0.0	3.5	4	0	0	4	4	4	1	GvpD	gas	vesicle	protein
DUF2075	PF09848.9	gi|410670692|ref|YP_006923063.1|	-	0.0048	16.2	0.0	1.1	8.4	0.0	2.2	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
IstB_IS21	PF01695.17	gi|410670692|ref|YP_006923063.1|	-	0.0054	16.5	0.1	0.046	13.5	0.0	2.3	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_16	PF13191.6	gi|410670692|ref|YP_006923063.1|	-	0.0056	17.1	0.0	0.27	11.6	0.0	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
RecA	PF00154.21	gi|410670692|ref|YP_006923063.1|	-	0.027	13.9	0.0	0.51	9.8	0.0	2.1	2	0	0	2	2	2	0	recA	bacterial	DNA	recombination	protein
AAA_14	PF13173.6	gi|410670692|ref|YP_006923063.1|	-	0.032	14.3	0.1	0.35	10.9	0.0	2.6	3	0	0	3	3	3	0	AAA	domain
DAP3	PF10236.9	gi|410670692|ref|YP_006923063.1|	-	0.033	13.4	0.0	0.74	8.9	0.0	2.2	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
PAXNEB	PF05625.11	gi|410670692|ref|YP_006923063.1|	-	0.038	13.1	3.0	4.1	6.5	0.3	3.2	3	0	0	3	3	3	0	PAXNEB	protein
AAA_22	PF13401.6	gi|410670692|ref|YP_006923063.1|	-	0.077	13.3	0.0	1.3	9.3	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
ArsA_ATPase	PF02374.15	gi|410670692|ref|YP_006923063.1|	-	0.079	12.1	0.0	0.13	11.5	0.0	1.2	1	0	0	1	1	1	0	Anion-transporting	ATPase
TrwB_AAD_bind	PF10412.9	gi|410670692|ref|YP_006923063.1|	-	0.11	11.4	0.1	0.2	10.5	0.1	1.4	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
MEDS	PF14417.6	gi|410670692|ref|YP_006923063.1|	-	0.13	12.1	0.0	0.47	10.3	0.0	1.9	3	0	0	3	3	2	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
AAA_10	PF12846.7	gi|410670692|ref|YP_006923063.1|	-	0.14	11.0	0.1	0.28	10.1	0.0	1.5	2	0	0	2	2	2	0	AAA-like	domain
AAA_30	PF13604.6	gi|410670692|ref|YP_006923063.1|	-	0.22	11.2	0.0	1.5	8.5	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
MarR	PF01047.22	gi|410670693|ref|YP_006923064.1|	-	6.9e-06	25.9	0.0	9e-06	25.5	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_45	PF14947.6	gi|410670693|ref|YP_006923064.1|	-	7.4e-05	22.7	0.1	8.7e-05	22.4	0.1	1.3	1	1	0	1	1	1	1	Winged	helix-turn-helix
MarR_2	PF12802.7	gi|410670693|ref|YP_006923064.1|	-	0.00025	20.9	0.0	0.00026	20.8	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|410670693|ref|YP_006923064.1|	-	0.00064	19.2	0.1	0.00086	18.8	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Fe_dep_repress	PF01325.19	gi|410670693|ref|YP_006923064.1|	-	0.0013	18.9	0.0	0.002	18.3	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.19	gi|410670693|ref|YP_006923064.1|	-	0.0017	18.2	0.0	0.0021	17.9	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|410670693|ref|YP_006923064.1|	-	0.0075	16.6	0.0	0.0094	16.3	0.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator
DUF4423	PF14394.6	gi|410670693|ref|YP_006923064.1|	-	0.0079	15.9	0.0	0.0089	15.8	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HemN_C	PF06969.16	gi|410670693|ref|YP_006923064.1|	-	0.02	14.9	0.0	0.027	14.5	0.0	1.2	1	0	0	1	1	1	0	HemN	C-terminal	domain
DUF2067	PF09840.9	gi|410670693|ref|YP_006923064.1|	-	0.044	13.4	0.1	0.094	12.3	0.1	1.6	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2067)
TFIIE_alpha	PF02002.17	gi|410670693|ref|YP_006923064.1|	-	0.046	13.6	0.1	0.052	13.4	0.1	1.1	1	0	0	1	1	1	0	TFIIE	alpha	subunit
SelB-wing_2	PF09106.11	gi|410670693|ref|YP_006923064.1|	-	0.053	13.7	0.0	0.067	13.4	0.0	1.2	1	0	0	1	1	1	0	Elongation	factor	SelB,	winged	helix
DUF1803	PF08820.10	gi|410670693|ref|YP_006923064.1|	-	0.058	13.4	0.0	0.066	13.2	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1803)
Penicillinase_R	PF03965.16	gi|410670693|ref|YP_006923064.1|	-	0.066	13.6	0.0	0.093	13.1	0.0	1.2	1	0	0	1	1	1	0	Penicillinase	repressor
RPA_C	PF08784.11	gi|410670693|ref|YP_006923064.1|	-	0.067	13.9	0.1	0.084	13.5	0.1	1.2	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
Mnd1	PF03962.15	gi|410670693|ref|YP_006923064.1|	-	0.11	12.8	0.3	0.25	11.6	0.2	1.6	1	1	1	2	2	2	0	Mnd1	HTH	domain
FeoC	PF09012.10	gi|410670693|ref|YP_006923064.1|	-	0.15	12.1	0.1	0.38	10.9	0.1	1.6	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
RseC_MucC	PF04246.12	gi|410670695|ref|YP_006923066.1|	-	6.3	6.8	6.2	2.5	8.1	0.6	2.0	1	1	1	2	2	2	0	Positive	regulator	of	sigma(E),	RseC/MucC
Rpr2	PF04032.16	gi|410670696|ref|YP_006923067.1|	-	1.7e-16	60.3	0.1	2.6e-16	59.7	0.1	1.3	1	0	0	1	1	1	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DZR	PF12773.7	gi|410670696|ref|YP_006923067.1|	-	0.013	15.5	0.7	0.03	14.3	0.7	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF4674	PF15719.5	gi|410670696|ref|YP_006923067.1|	-	0.023	14.7	1.5	0.54	10.3	0.1	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4674)
Lar_restr_allev	PF14354.6	gi|410670696|ref|YP_006923067.1|	-	0.058	13.8	0.1	0.12	12.8	0.1	1.6	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-CCHC_4	PF14392.6	gi|410670696|ref|YP_006923067.1|	-	1.7	8.4	4.7	4.1	7.2	0.4	3.0	3	1	1	4	4	4	0	Zinc	knuckle
Lactamase_B_3	PF13483.6	gi|410670697|ref|YP_006923068.1|	-	3.2e-34	118.2	0.0	4e-34	117.9	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|410670697|ref|YP_006923068.1|	-	1e-09	38.2	0.1	1.9e-09	37.3	0.1	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
tRNA_deacylase	PF04414.12	gi|410670698|ref|YP_006923069.1|	-	8e-70	234.5	0.0	1.2e-69	233.9	0.0	1.3	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
Lyase_catalyt	PF09093.11	gi|410670698|ref|YP_006923069.1|	-	0.02	14.0	0.2	0.034	13.3	0.2	1.3	1	0	0	1	1	1	0	Lyase,	catalytic
DUF1548	PF07579.11	gi|410670698|ref|YP_006923069.1|	-	0.1	12.9	0.3	0.23	11.8	0.1	1.6	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF1548)
DUF1749	PF08538.10	gi|410670698|ref|YP_006923069.1|	-	0.12	11.4	0.8	0.58	9.2	0.3	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1749)
Tubulin	PF00091.25	gi|410670699|ref|YP_006923070.1|	-	5.9e-41	140.8	0.2	8.9e-41	140.2	0.2	1.3	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
FtsZ_C	PF12327.8	gi|410670699|ref|YP_006923070.1|	-	6.5e-35	119.3	1.7	6.5e-35	119.3	1.7	2.0	2	0	0	2	2	2	1	FtsZ	family,	C-terminal	domain
NAD_binding_10	PF13460.6	gi|410670699|ref|YP_006923070.1|	-	0.0002	21.3	1.5	0.0081	16.1	0.5	2.6	2	0	0	2	2	2	1	NAD(P)H-binding
Ocnus	PF05005.15	gi|410670699|ref|YP_006923070.1|	-	0.15	12.2	0.0	0.62	10.2	0.0	1.9	2	0	0	2	2	2	0	Janus/Ocnus	family	(Ocnus)
Tubulin_2	PF13809.6	gi|410670699|ref|YP_006923070.1|	-	8.5	5.5	7.8	1.1	8.3	2.6	2.0	1	1	0	2	2	2	0	Tubulin	like
SecE	PF00584.20	gi|410670700|ref|YP_006923071.1|	-	3.2e-06	27.0	0.1	3.7e-06	26.8	0.1	1.1	1	0	0	1	1	1	1	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
FixQ	PF05545.11	gi|410670700|ref|YP_006923071.1|	-	0.068	13.2	0.7	0.099	12.6	0.7	1.2	1	0	0	1	1	1	0	Cbb3-type	cytochrome	oxidase	component	FixQ
Spt5-NGN	PF03439.13	gi|410670701|ref|YP_006923072.1|	-	5.7e-25	87.0	0.2	8.4e-25	86.5	0.2	1.3	1	0	0	1	1	1	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.29	gi|410670701|ref|YP_006923072.1|	-	2.7e-06	27.1	2.4	3.7e-05	23.5	0.1	2.7	3	0	0	3	3	3	1	KOW	motif
Ribosomal_L11_N	PF03946.14	gi|410670702|ref|YP_006923073.1|	-	3.9e-24	84.3	0.7	6.5e-24	83.5	0.7	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L11,	N-terminal	domain
Ribosomal_L11	PF00298.19	gi|410670702|ref|YP_006923073.1|	-	1.2e-17	64.2	0.4	1.2e-17	64.2	0.4	1.6	2	0	0	2	2	2	1	Ribosomal	protein	L11,	RNA	binding	domain
Prp18	PF02840.15	gi|410670702|ref|YP_006923073.1|	-	0.11	12.6	0.0	0.18	11.9	0.0	1.4	1	0	0	1	1	1	0	Prp18	domain
Ribosomal_L1	PF00687.21	gi|410670703|ref|YP_006923074.1|	-	9.4e-47	159.4	0.1	1.1e-46	159.1	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
Ribosomal_L10	PF00466.20	gi|410670704|ref|YP_006923075.1|	-	2.3e-25	88.6	1.5	2.3e-25	88.6	0.2	1.7	2	0	0	2	2	2	1	Ribosomal	protein	L10
RL10P_insert	PF17777.1	gi|410670704|ref|YP_006923075.1|	-	4.4e-19	68.2	0.2	9.4e-19	67.2	0.2	1.5	1	0	0	1	1	1	1	Insertion	domain	in	60S	ribosomal	protein	L10P
Ribosomal_60s	PF00428.19	gi|410670704|ref|YP_006923075.1|	-	5.7e-06	26.8	14.0	5.7e-05	23.6	14.0	2.5	1	1	0	1	1	1	1	60s	Acidic	ribosomal	protein
Ribosomal_60s	PF00428.19	gi|410670705|ref|YP_006923076.1|	-	3e-18	66.2	22.8	3.5e-18	66.0	22.8	1.1	1	0	0	1	1	1	1	60s	Acidic	ribosomal	protein
TetR_C_31	PF17940.1	gi|410670705|ref|YP_006923076.1|	-	0.0039	17.4	5.9	0.0054	16.9	5.9	1.3	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
HTH_Tnp_Tc3_2	PF01498.18	gi|410670705|ref|YP_006923076.1|	-	0.011	16.0	0.0	0.016	15.5	0.0	1.2	1	0	0	1	1	1	0	Transposase
EF-hand_14	PF17959.1	gi|410670705|ref|YP_006923076.1|	-	0.023	15.0	0.0	0.034	14.5	0.0	1.2	1	0	0	1	1	1	0	EF-hand	domain
CAP_N	PF01213.19	gi|410670705|ref|YP_006923076.1|	-	0.046	13.2	1.2	0.046	13.2	1.2	1.1	1	0	0	1	1	1	0	Adenylate	cyclase	associated	(CAP)	N	terminal
PepSY_2	PF13670.6	gi|410670705|ref|YP_006923076.1|	-	1.2	9.1	15.3	15	5.7	0.0	2.2	2	0	0	2	2	2	0	Peptidase	propeptide	and	YPEB	domain
ABC1	PF03109.16	gi|410670706|ref|YP_006923077.1|	-	6.3e-26	90.9	0.0	1.2e-25	90.0	0.0	1.4	1	0	0	1	1	1	1	ABC1	family
RIO1	PF01163.22	gi|410670706|ref|YP_006923077.1|	-	6.9e-10	38.8	0.4	4.1e-09	36.3	0.0	2.2	2	0	0	2	2	2	1	RIO1	family
WaaY	PF06176.11	gi|410670706|ref|YP_006923077.1|	-	2.1e-05	24.2	1.0	3.6e-05	23.5	0.4	1.7	2	0	0	2	2	2	1	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
Pkinase	PF00069.25	gi|410670706|ref|YP_006923077.1|	-	0.00013	21.4	0.3	0.0008	18.9	0.3	2.0	1	1	0	1	1	1	1	Protein	kinase	domain
APH	PF01636.23	gi|410670706|ref|YP_006923077.1|	-	0.0045	16.9	0.0	0.3	11.0	0.1	2.2	2	0	0	2	2	2	1	Phosphotransferase	enzyme	family
ABC_tran	PF00005.27	gi|410670707|ref|YP_006923078.1|	-	1.7e-31	109.5	0.0	1.8e-30	106.3	0.0	2.0	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|410670707|ref|YP_006923078.1|	-	2.9e-11	43.7	2.1	9.9e-07	28.9	0.0	2.5	2	1	1	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|410670707|ref|YP_006923078.1|	-	1e-06	28.4	0.4	0.00028	20.4	0.1	2.9	2	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_25	PF13481.6	gi|410670707|ref|YP_006923078.1|	-	0.00092	18.8	0.0	0.03	13.9	0.0	2.6	3	1	0	3	3	3	1	AAA	domain
AAA_23	PF13476.6	gi|410670707|ref|YP_006923078.1|	-	0.0017	18.9	0.2	0.0022	18.5	0.2	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|410670707|ref|YP_006923078.1|	-	0.0058	16.4	1.9	0.024	14.4	0.1	2.5	3	0	0	3	3	3	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|410670707|ref|YP_006923078.1|	-	0.0063	16.4	0.1	0.012	15.5	0.1	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_15	PF13175.6	gi|410670707|ref|YP_006923078.1|	-	0.019	14.7	0.0	0.27	10.9	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_33	PF13671.6	gi|410670707|ref|YP_006923078.1|	-	0.034	14.3	0.1	0.72	10.0	0.1	2.2	2	0	0	2	2	2	0	AAA	domain
Memo	PF01875.17	gi|410670707|ref|YP_006923078.1|	-	0.038	13.1	0.0	0.069	12.3	0.0	1.5	1	1	0	1	1	1	0	Memo-like	protein
AAA_29	PF13555.6	gi|410670707|ref|YP_006923078.1|	-	0.054	13.3	0.0	0.12	12.2	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NTPase_1	PF03266.15	gi|410670707|ref|YP_006923078.1|	-	0.056	13.3	0.1	0.13	12.2	0.1	1.6	1	0	0	1	1	1	0	NTPase
AAA_22	PF13401.6	gi|410670707|ref|YP_006923078.1|	-	0.085	13.1	0.1	3.6	7.9	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.6	gi|410670707|ref|YP_006923078.1|	-	0.095	12.9	0.0	0.21	11.8	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|410670707|ref|YP_006923078.1|	-	0.098	12.4	0.0	1.7	8.3	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Y1_Tnp	PF01797.16	gi|410670707|ref|YP_006923078.1|	-	0.1	12.7	1.7	0.18	11.9	1.7	1.3	1	0	0	1	1	1	0	Transposase	IS200	like
DEAD	PF00270.29	gi|410670707|ref|YP_006923078.1|	-	0.12	12.2	0.1	0.92	9.2	0.0	2.0	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA	PF00004.29	gi|410670707|ref|YP_006923078.1|	-	0.13	12.7	0.3	0.92	9.9	0.3	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
cobW	PF02492.19	gi|410670707|ref|YP_006923078.1|	-	0.13	11.8	0.1	0.47	10.0	0.0	1.8	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Roc	PF08477.13	gi|410670707|ref|YP_006923078.1|	-	0.15	12.3	0.1	0.28	11.4	0.1	1.5	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
NACHT	PF05729.12	gi|410670707|ref|YP_006923078.1|	-	0.17	11.8	0.0	0.27	11.1	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
CbiQ	PF02361.16	gi|410670708|ref|YP_006923079.1|	-	2.1e-36	125.6	15.3	2.8e-36	125.2	15.3	1.1	1	0	0	1	1	1	1	Cobalt	transport	protein
CarboxypepD_reg	PF13620.6	gi|410670709|ref|YP_006923080.1|	-	0.00045	20.4	0.0	0.00067	19.9	0.0	1.3	1	0	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
DOMON	PF03351.17	gi|410670709|ref|YP_006923080.1|	-	0.081	13.1	0.0	0.098	12.9	0.0	1.3	1	0	0	1	1	1	0	DOMON	domain
Msg2_C	PF12373.8	gi|410670709|ref|YP_006923080.1|	-	0.15	11.5	0.2	0.4	10.1	0.2	1.7	1	0	0	1	1	1	0	Major	surface	glycoprotein	2	C	terminal
CbiM	PF01891.16	gi|410670710|ref|YP_006923081.1|	-	6.2e-48	163.4	20.6	7e-48	163.2	20.6	1.0	1	0	0	1	1	1	1	Cobalt	uptake	substrate-specific	transmembrane	region
DUF1422	PF07226.11	gi|410670710|ref|YP_006923081.1|	-	0.13	12.3	0.1	0.13	12.3	0.1	2.3	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1422)
DUF2517	PF10725.9	gi|410670710|ref|YP_006923081.1|	-	0.39	10.5	3.0	0.47	10.3	0.3	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2517)
ECSCR	PF15820.5	gi|410670710|ref|YP_006923081.1|	-	8.8	6.2	7.7	6	6.8	0.2	2.6	2	1	0	2	2	2	0	Endothelial	cell-specific	chemotaxis	regulator
DUF4198	PF10670.9	gi|410670711|ref|YP_006923082.1|	-	1.5e-24	87.6	0.8	2.3e-24	87.0	0.8	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4198)
PGF-CTERM	PF18204.1	gi|410670711|ref|YP_006923082.1|	-	0.0049	16.8	1.1	0.008	16.1	1.1	1.4	1	0	0	1	1	1	1	PGF-CTERM	motif
Peptidase_A4	PF01828.17	gi|410670711|ref|YP_006923082.1|	-	0.85	9.1	5.3	0.72	9.3	1.4	2.1	2	0	0	2	2	2	0	Peptidase	A4	family
Radical_SAM	PF04055.21	gi|410670713|ref|YP_006923084.1|	-	1.8e-09	38.2	0.4	4.3e-09	37.0	0.0	1.9	3	0	0	3	3	3	1	Radical	SAM	superfamily
DUF3463	PF11946.8	gi|410670713|ref|YP_006923084.1|	-	3.1e-07	30.3	0.1	4.7e-07	29.7	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3463)
Cohesin	PF00963.18	gi|410670715|ref|YP_006923086.1|	-	3.1e-05	24.2	0.1	3.7e-05	24.0	0.1	1.1	1	0	0	1	1	1	1	Cohesin	domain
SAM_adeno_trans	PF01887.16	gi|410670717|ref|YP_006923088.1|	-	8.4e-80	267.6	0.4	9.6e-80	267.4	0.4	1.0	1	0	0	1	1	1	1	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
SH3_19	PF18597.1	gi|410670717|ref|YP_006923088.1|	-	0.085	12.7	0.3	2.9	7.8	0.1	2.7	2	1	1	3	3	3	0	Myosin	X	N-terminal	SH3	domain
PDZ_6	PF17820.1	gi|410670717|ref|YP_006923088.1|	-	0.096	12.6	1.4	1.4	8.8	0.1	2.9	2	1	1	3	3	3	0	PDZ	domain
ThiC_Rad_SAM	PF01964.18	gi|410670718|ref|YP_006923089.1|	-	8.6e-167	555.1	0.9	9.8e-167	555.0	0.9	1.0	1	0	0	1	1	1	1	Radical	SAM	ThiC	family
DUF2059	PF09832.9	gi|410670719|ref|YP_006923090.1|	-	0.008	16.2	0.1	0.0086	16.1	0.1	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2059)
Glycos_transf_2	PF00535.26	gi|410670720|ref|YP_006923091.1|	-	3.2e-17	62.8	0.0	4.6e-17	62.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|410670720|ref|YP_006923091.1|	-	2e-08	34.4	0.0	2.8e-08	33.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|410670720|ref|YP_006923091.1|	-	0.00017	22.1	0.0	0.00039	20.9	0.0	1.7	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
SUR7	PF06687.12	gi|410670720|ref|YP_006923091.1|	-	0.082	12.5	0.2	0.11	12.2	0.2	1.1	1	0	0	1	1	1	0	SUR7/PalI	family
DUF4191	PF13829.6	gi|410670720|ref|YP_006923091.1|	-	1.6	8.1	3.6	2.5	7.4	3.6	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
TBP	PF00352.21	gi|410670721|ref|YP_006923092.1|	-	4.9e-56	186.7	0.3	2.9e-27	94.4	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.8	gi|410670721|ref|YP_006923092.1|	-	3.3e-08	33.5	0.0	0.0061	16.6	0.0	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
NdhS	PF11623.8	gi|410670721|ref|YP_006923092.1|	-	0.0013	18.4	0.0	1.1	8.9	0.0	2.5	2	0	0	2	2	2	2	NAD(P)H	dehydrogenase	subunit	S
SMC_ScpB	PF04079.16	gi|410670722|ref|YP_006923093.1|	-	5.2e-37	126.9	0.1	1.1e-35	122.7	0.0	2.6	3	0	0	3	3	3	1	Segregation	and	condensation	complex	subunit	ScpB
HTH_20	PF12840.7	gi|410670722|ref|YP_006923093.1|	-	0.0014	18.6	0.2	0.0051	16.8	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|410670722|ref|YP_006923093.1|	-	0.058	13.3	0.0	0.69	9.8	0.0	2.4	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
DUF4269	PF14091.6	gi|410670722|ref|YP_006923093.1|	-	0.095	12.9	0.0	0.28	11.4	0.0	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4269)
YozD	PF14162.6	gi|410670722|ref|YP_006923093.1|	-	0.16	12.3	2.0	0.92	9.9	0.2	2.7	1	1	1	2	2	2	0	YozD-like	protein
SMC_ScpA	PF02616.14	gi|410670723|ref|YP_006923094.1|	-	2.8e-18	66.7	2.2	1.2e-16	61.4	2.2	2.1	1	1	0	1	1	1	1	Segregation	and	condensation	protein	ScpA
SMC_N	PF02463.19	gi|410670724|ref|YP_006923095.1|	-	5e-73	245.2	5.4	1.2e-72	244.0	5.4	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
SMC_hinge	PF06470.13	gi|410670724|ref|YP_006923095.1|	-	1.2e-32	112.7	0.0	6.3e-32	110.3	0.0	2.4	1	0	0	1	1	1	1	SMC	proteins	Flexible	Hinge	Domain
AAA_23	PF13476.6	gi|410670724|ref|YP_006923095.1|	-	4.1e-18	66.6	2.9	4.1e-18	66.6	2.9	6.3	2	2	1	3	3	1	1	AAA	domain
AAA_29	PF13555.6	gi|410670724|ref|YP_006923095.1|	-	8.3e-08	31.9	0.0	1.8e-07	30.8	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|410670724|ref|YP_006923095.1|	-	1.5e-07	31.5	21.6	1.5e-07	31.5	21.6	4.6	2	2	0	2	2	1	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|410670724|ref|YP_006923095.1|	-	5.4e-07	29.7	0.6	0.00011	22.2	0.1	4.1	4	0	0	4	4	4	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TolA_bind_tri	PF16331.5	gi|410670724|ref|YP_006923095.1|	-	6.8e-05	22.9	2.7	6.8e-05	22.9	2.7	7.9	8	0	0	8	8	7	2	TolA	binding	protein	trimerisation
FapA	PF03961.13	gi|410670724|ref|YP_006923095.1|	-	0.0036	16.0	10.8	0.0036	16.0	10.8	7.3	3	2	5	8	8	8	1	Flagellar	Assembly	Protein	A
Lebercilin	PF15619.6	gi|410670724|ref|YP_006923095.1|	-	0.0056	16.4	16.1	0.0056	16.4	16.1	6.3	3	2	2	6	6	5	2	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
PI3K_P85_iSH2	PF16454.5	gi|410670724|ref|YP_006923095.1|	-	0.0066	16.1	7.5	0.0066	16.1	7.5	6.9	2	2	4	6	6	6	2	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
CEP63	PF17045.5	gi|410670724|ref|YP_006923095.1|	-	0.0074	16.2	12.4	0.0074	16.2	12.4	5.4	2	2	3	5	5	3	1	Centrosomal	protein	of	63	kDa
APG6_N	PF17675.1	gi|410670724|ref|YP_006923095.1|	-	0.013	16.0	9.9	0.013	16.0	9.9	8.9	2	2	6	9	9	8	0	Apg6	coiled-coil	region
NPV_P10	PF05531.12	gi|410670724|ref|YP_006923095.1|	-	0.018	15.5	0.6	0.018	15.5	0.6	8.3	7	1	2	9	9	9	0	Nucleopolyhedrovirus	P10	protein
AAA_13	PF13166.6	gi|410670724|ref|YP_006923095.1|	-	0.25	9.9	81.0	0.0077	14.9	17.1	4.9	2	2	3	5	5	5	0	AAA	domain
Fez1	PF06818.15	gi|410670724|ref|YP_006923095.1|	-	0.63	10.5	98.4	0.27	11.7	14.6	6.3	2	2	1	5	5	5	0	Fez1
TMF_TATA_bd	PF12325.8	gi|410670724|ref|YP_006923095.1|	-	0.83	9.9	0.0	0.83	9.9	0.0	9.3	2	2	4	8	8	6	0	TATA	element	modulatory	factor	1	TATA	binding
APH	PF01636.23	gi|410670724|ref|YP_006923095.1|	-	1.2	9.0	3.5	4.6	7.1	2.0	2.7	2	0	0	2	2	2	0	Phosphotransferase	enzyme	family
ATG16	PF08614.11	gi|410670724|ref|YP_006923095.1|	-	1.3	9.2	106.1	0.037	14.2	10.1	7.2	2	2	4	7	7	6	0	Autophagy	protein	16	(ATG16)
MscS_porin	PF12795.7	gi|410670724|ref|YP_006923095.1|	-	1.5	8.3	79.9	0.014	15.0	9.4	5.4	2	2	2	4	4	4	0	Mechanosensitive	ion	channel	porin	domain
CENP-F_leu_zip	PF10473.9	gi|410670724|ref|YP_006923095.1|	-	1.9	8.5	121.9	0.084	12.9	14.7	7.4	2	2	4	7	7	6	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Spc7	PF08317.11	gi|410670724|ref|YP_006923095.1|	-	2.1	7.1	111.8	0.16	10.8	14.7	7.4	2	2	4	6	6	5	0	Spc7	kinetochore	protein
YvrJ	PF12841.7	gi|410670724|ref|YP_006923095.1|	-	2.3	7.8	6.8	8.8	6.0	0.6	3.8	3	0	0	3	3	3	0	YvrJ	protein	family
FliJ	PF02050.16	gi|410670724|ref|YP_006923095.1|	-	3.3	8.0	81.6	0.55	10.5	2.5	8.6	3	2	6	9	9	7	0	Flagellar	FliJ	protein
COG2	PF06148.11	gi|410670725|ref|YP_006923096.1|	-	0.0011	19.1	4.3	0.002	18.2	4.3	1.4	1	0	0	1	1	1	1	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Baculo_PEP_C	PF04513.12	gi|410670725|ref|YP_006923096.1|	-	0.031	14.3	0.5	0.052	13.6	0.5	1.3	1	0	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
NPV_P10	PF05531.12	gi|410670725|ref|YP_006923096.1|	-	0.054	14.0	4.1	0.091	13.2	0.9	2.3	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
FlaC_arch	PF05377.11	gi|410670725|ref|YP_006923096.1|	-	1.3	9.4	5.5	7.8	7.0	0.4	2.8	3	0	0	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
Med9	PF07544.13	gi|410670725|ref|YP_006923096.1|	-	1.4	9.0	9.4	5.6	7.1	2.2	3.1	2	1	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
SMC_N	PF02463.19	gi|410670726|ref|YP_006923097.1|	-	3e-23	82.4	0.0	7.5e-23	81.1	0.0	1.7	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|410670726|ref|YP_006923097.1|	-	1.6e-19	71.2	14.7	1.6e-19	71.2	14.7	5.0	1	1	1	2	2	1	1	AAA	domain
AAA_15	PF13175.6	gi|410670726|ref|YP_006923097.1|	-	7.2e-10	39.1	28.3	2.9e-09	37.1	16.8	3.9	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|410670726|ref|YP_006923097.1|	-	7.6e-09	35.8	7.7	7.5e-05	22.7	0.1	3.5	2	2	1	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|410670726|ref|YP_006923097.1|	-	1.5e-06	27.9	0.0	3.1e-06	26.8	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|410670726|ref|YP_006923097.1|	-	7e-05	22.5	0.0	7e-05	22.5	0.0	3.4	4	0	0	4	4	4	1	AAA	domain
AAA_13	PF13166.6	gi|410670726|ref|YP_006923097.1|	-	0.00066	18.5	11.7	0.00066	18.5	11.7	4.8	2	1	3	5	5	4	1	AAA	domain
SbcCD_C	PF13558.6	gi|410670726|ref|YP_006923097.1|	-	0.0052	17.0	0.0	0.013	15.7	0.0	1.7	1	0	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_16	PF13191.6	gi|410670726|ref|YP_006923097.1|	-	0.013	15.9	2.4	0.04	14.3	0.0	2.9	2	1	0	2	2	2	0	AAA	ATPase	domain
DUF2313	PF10076.9	gi|410670726|ref|YP_006923097.1|	-	0.064	13.1	1.5	4.9	7.0	0.1	3.1	2	1	0	2	2	2	0	Uncharacterised	protein	conserved	in	bacteria	(DUF2313)
AAA_33	PF13671.6	gi|410670726|ref|YP_006923097.1|	-	0.073	13.2	0.1	1.4	9.0	0.0	2.8	2	0	0	2	2	2	0	AAA	domain
DUF3584	PF12128.8	gi|410670726|ref|YP_006923097.1|	-	0.079	10.5	51.9	0.12	9.9	5.6	4.3	2	1	2	4	4	4	0	Protein	of	unknown	function	(DUF3584)
RsgA_GTPase	PF03193.16	gi|410670726|ref|YP_006923097.1|	-	0.16	11.9	1.8	0.37	10.7	0.0	2.6	2	0	0	2	2	2	0	RsgA	GTPase
MukB	PF04310.12	gi|410670726|ref|YP_006923097.1|	-	0.16	11.7	2.6	0.8	9.5	0.0	3.3	3	0	0	3	3	3	0	MukB	N-terminal
Phage_B	PF02304.15	gi|410670726|ref|YP_006923097.1|	-	0.21	12.0	1.6	0.44	11.0	0.1	2.3	2	0	0	2	2	2	0	Scaffold	protein	B
ABC_tran	PF00005.27	gi|410670726|ref|YP_006923097.1|	-	0.72	10.4	0.0	0.72	10.4	0.0	5.2	2	1	1	3	3	2	0	ABC	transporter
CENP-F_leu_zip	PF10473.9	gi|410670726|ref|YP_006923097.1|	-	0.86	9.6	71.3	1.7	8.7	10.3	5.7	3	2	2	5	5	5	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
ATG16	PF08614.11	gi|410670726|ref|YP_006923097.1|	-	0.92	9.7	53.9	1.7	8.9	2.0	5.1	2	2	2	4	4	4	0	Autophagy	protein	16	(ATG16)
LPP	PF04728.13	gi|410670726|ref|YP_006923097.1|	-	3.9	7.9	9.8	33	5.0	0.1	5.7	6	0	0	6	6	6	0	Lipoprotein	leucine-zipper
TMF_TATA_bd	PF12325.8	gi|410670726|ref|YP_006923097.1|	-	8.6	6.6	67.1	0.15	12.3	0.7	7.3	3	3	4	7	7	6	0	TATA	element	modulatory	factor	1	TATA	binding
Metallophos	PF00149.28	gi|410670727|ref|YP_006923098.1|	-	7.2e-13	49.5	0.3	2.2e-12	47.9	0.3	1.9	2	0	0	2	2	2	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|410670727|ref|YP_006923098.1|	-	1.5e-10	41.5	1.4	4.3e-10	40.0	0.3	2.4	3	1	0	3	3	3	1	Calcineurin-like	phosphoesterase	superfamily	domain
MmoB_DmpM	PF02406.17	gi|410670727|ref|YP_006923098.1|	-	0.052	13.8	0.1	0.15	12.3	0.0	1.8	2	0	0	2	2	2	0	MmoB/DmpM	family
MacB_PCD	PF12704.7	gi|410670730|ref|YP_006923101.1|	-	0.06	13.7	1.6	0.078	13.3	0.2	1.8	2	0	0	2	2	2	0	MacB-like	periplasmic	core	domain
DUF1449	PF07290.11	gi|410670731|ref|YP_006923102.1|	-	0.031	13.9	0.0	0.039	13.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1449)
AglB_L1	PF18079.1	gi|410670731|ref|YP_006923102.1|	-	0.05	13.9	0.1	0.097	13.0	0.1	1.6	1	0	0	1	1	1	0	Archaeal	glycosylation	protein	B	long	peripheral	domain
Pilin_N	PF07790.11	gi|410670733|ref|YP_006923104.1|	-	0.00062	20.6	3.0	0.0014	19.5	1.4	2.5	2	0	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
CPSase_sm_chain	PF00988.22	gi|410670737|ref|YP_006923108.1|	-	0.073	12.9	0.2	3.4	7.5	0.0	2.1	2	0	0	2	2	2	0	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
Flp1_like	PF16982.5	gi|410670738|ref|YP_006923109.1|	-	0.068	12.6	1.1	0.13	11.6	1.1	1.5	1	0	0	1	1	1	0	Putative	Flagellin,	Flp1-like,	domain
SdrD_B	PF17210.3	gi|410670740|ref|YP_006923111.1|	-	6.2e-74	245.4	10.5	4.8e-38	129.8	3.4	2.0	2	0	0	2	2	2	2	SdrD	B-like	domain
CarboxypepD_reg	PF13620.6	gi|410670740|ref|YP_006923111.1|	-	1.1e-14	54.4	1.1	2.3e-08	34.2	0.1	2.4	2	0	0	2	2	2	2	Carboxypeptidase	regulatory-like	domain
bMG3	PF11974.8	gi|410670740|ref|YP_006923111.1|	-	2.4e-10	40.3	0.0	1.3e-05	25.1	0.0	2.2	2	0	0	2	2	2	2	Bacterial	alpha-2-macroglobulin	MG3	domain
Dioxygenase_C	PF00775.21	gi|410670740|ref|YP_006923111.1|	-	4.9e-07	29.4	0.8	0.0011	18.4	0.1	2.2	2	0	0	2	2	2	2	Dioxygenase
SpaA	PF17802.1	gi|410670740|ref|YP_006923111.1|	-	5.6e-06	26.6	9.5	3.5e-05	24.1	0.3	3.0	2	2	1	3	3	3	2	Prealbumin-like	fold	domain
CarbopepD_reg_2	PF13715.6	gi|410670740|ref|YP_006923111.1|	-	1.9e-05	24.5	0.9	0.25	11.4	0.2	2.5	2	0	0	2	2	2	2	CarboxypepD_reg-like	domain
MetallophosN	PF16371.5	gi|410670740|ref|YP_006923111.1|	-	2.7e-05	24.3	0.6	0.0074	16.5	0.1	2.7	2	0	0	2	2	2	1	N	terminal	of	Calcineurin-like	phosphoesterase
Big_1	PF02369.16	gi|410670740|ref|YP_006923111.1|	-	0.00016	21.6	0.5	0.05	13.6	0.1	2.9	2	1	0	2	2	2	1	Bacterial	Ig-like	domain	(group	1)
TTR-52	PF01060.23	gi|410670740|ref|YP_006923111.1|	-	0.00018	22.2	0.1	0.4	11.4	0.2	2.5	2	1	0	2	2	2	2	Transthyretin-like	family
Pollen_Ole_e_I	PF01190.17	gi|410670740|ref|YP_006923111.1|	-	0.0024	18.2	0.1	0.48	10.8	0.0	2.3	2	0	0	2	2	2	1	Pollen	proteins	Ole	e	I	like
Invasin_D3	PF09134.10	gi|410670740|ref|YP_006923111.1|	-	0.037	14.3	2.2	1.2	9.5	0.1	2.6	3	0	0	3	3	3	0	Invasin,	domain	3
DUF1416	PF07210.12	gi|410670740|ref|YP_006923111.1|	-	0.037	13.9	0.0	0.39	10.6	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1416)
FlgD_ig	PF13860.6	gi|410670740|ref|YP_006923111.1|	-	1	9.2	4.1	2.1	8.3	0.1	3.0	2	2	1	3	3	3	0	FlgD	Ig-like	domain
VWA	PF00092.28	gi|410670742|ref|YP_006923113.1|	-	2.7e-36	125.4	3.4	4.2e-24	85.7	0.2	3.1	3	0	0	3	3	3	2	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|410670742|ref|YP_006923113.1|	-	1.4e-19	70.7	1.8	3.5e-13	50.1	0.3	3.8	3	0	0	3	3	3	2	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.6	gi|410670742|ref|YP_006923113.1|	-	7.5e-12	45.5	0.0	2.9e-05	24.0	0.0	2.4	2	0	0	2	2	2	2	von	Willebrand	factor	type	A	domain
Big_1	PF02369.16	gi|410670742|ref|YP_006923113.1|	-	1.1e-08	34.9	52.9	8.6e-08	32.1	7.9	8.4	8	2	0	8	8	8	3	Bacterial	Ig-like	domain	(group	1)
VWA_CoxE	PF05762.14	gi|410670742|ref|YP_006923113.1|	-	0.00022	20.7	4.4	0.095	12.1	0.1	3.3	2	1	1	3	3	3	2	VWA	domain	containing	CoxE-like	protein
vWA-TerF-like	PF10138.9	gi|410670742|ref|YP_006923113.1|	-	0.0031	17.7	0.2	0.34	11.0	0.0	2.4	1	1	1	2	2	2	1	vWA	found	in	TerF	C	terminus
GLEYA	PF10528.9	gi|410670742|ref|YP_006923113.1|	-	0.037	14.4	0.1	0.27	11.7	0.1	2.6	1	0	0	1	1	1	0	GLEYA	domain
CobT_C	PF11775.8	gi|410670742|ref|YP_006923113.1|	-	0.077	12.6	0.1	0.36	10.4	0.1	2.1	2	0	0	2	2	2	0	Cobalamin	biosynthesis	protein	CobT	VWA	domain
Invasin_D3	PF09134.10	gi|410670742|ref|YP_006923113.1|	-	1	9.7	39.7	0.12	12.7	5.7	6.4	6	0	0	6	6	6	0	Invasin,	domain	3
Pro_isomerase	PF00160.21	gi|410670743|ref|YP_006923114.1|	-	4.2e-47	160.3	0.1	4.9e-47	160.1	0.1	1.0	1	0	0	1	1	1	1	Cyclophilin	type	peptidyl-prolyl	cis-trans	isomerase/CLD
SBP_bac_11	PF13531.6	gi|410670744|ref|YP_006923115.1|	-	3.4e-47	161.1	0.0	3.9e-47	160.9	0.0	1.0	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|410670744|ref|YP_006923115.1|	-	5e-15	56.2	0.4	2.2e-13	50.9	0.4	2.0	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|410670744|ref|YP_006923115.1|	-	0.0012	18.3	0.0	0.0021	17.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
Phosphonate-bd	PF12974.7	gi|410670744|ref|YP_006923115.1|	-	0.0016	18.1	0.1	0.0041	16.7	0.1	1.8	1	1	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
PBP_like_2	PF12849.7	gi|410670744|ref|YP_006923115.1|	-	0.011	15.4	0.2	0.022	14.4	0.1	1.5	2	0	0	2	2	2	0	PBP	superfamily	domain
BPD_transp_1	PF00528.22	gi|410670745|ref|YP_006923116.1|	-	1e-19	71.0	17.2	1e-19	71.0	17.2	1.4	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|410670746|ref|YP_006923117.1|	-	3.5e-31	108.5	0.0	2.5e-30	105.8	0.0	2.0	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|410670746|ref|YP_006923117.1|	-	1.1e-11	45.1	0.4	4.8e-06	26.6	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE_2	PF08402.10	gi|410670746|ref|YP_006923117.1|	-	3.9e-09	36.5	0.0	9.6e-09	35.3	0.0	1.7	1	0	0	1	1	1	1	TOBE	domain
SMC_N	PF02463.19	gi|410670746|ref|YP_006923117.1|	-	9e-06	25.3	0.0	0.00011	21.8	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
TOBE	PF03459.17	gi|410670746|ref|YP_006923117.1|	-	0.00027	21.1	0.0	0.0011	19.2	0.0	1.9	2	0	0	2	2	2	1	TOBE	domain
AAA_23	PF13476.6	gi|410670746|ref|YP_006923117.1|	-	0.00094	19.7	0.1	0.0019	18.7	0.1	1.5	1	0	0	1	1	1	1	AAA	domain
OB_MalK	PF17912.1	gi|410670746|ref|YP_006923117.1|	-	0.0013	19.5	0.0	0.0048	17.7	0.0	2.1	1	0	0	1	1	1	1	MalK	OB	fold	domain
AAA_30	PF13604.6	gi|410670746|ref|YP_006923117.1|	-	0.0024	17.6	0.0	0.0057	16.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|410670746|ref|YP_006923117.1|	-	0.0027	17.4	0.0	0.0057	16.4	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|410670746|ref|YP_006923117.1|	-	0.0074	16.6	0.3	0.06	13.6	0.3	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|410670746|ref|YP_006923117.1|	-	0.0095	16.3	0.1	0.02	15.3	0.1	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
SbcCD_C	PF13558.6	gi|410670746|ref|YP_006923117.1|	-	0.022	15.0	0.3	0.2	11.9	0.3	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_33	PF13671.6	gi|410670746|ref|YP_006923117.1|	-	0.06	13.5	0.0	0.15	12.2	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
TniB	PF05621.11	gi|410670746|ref|YP_006923117.1|	-	0.077	12.4	0.3	0.83	9.0	0.0	2.4	2	1	1	3	3	3	0	Bacterial	TniB	protein
NACHT	PF05729.12	gi|410670746|ref|YP_006923117.1|	-	0.12	12.2	0.0	0.21	11.5	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_25	PF13481.6	gi|410670746|ref|YP_006923117.1|	-	0.15	11.6	0.0	1.1	8.8	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
Baculo_PEP_C	PF04513.12	gi|410670747|ref|YP_006923118.1|	-	0.0099	15.9	1.3	0.6	10.1	0.1	3.6	2	1	2	4	4	4	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
PRD	PF00874.20	gi|410670747|ref|YP_006923118.1|	-	0.025	14.9	0.1	5.6	7.3	0.1	3.0	2	0	0	2	2	2	0	PRD	domain
PCRF	PF03462.18	gi|410670747|ref|YP_006923118.1|	-	0.028	14.3	14.0	0.25	11.2	0.8	3.4	3	0	0	3	3	3	0	PCRF	domain
Gal4_dimer	PF03902.13	gi|410670747|ref|YP_006923118.1|	-	0.095	12.9	0.9	3.8	7.8	0.0	2.9	2	0	0	2	2	2	0	Gal4-like	dimerisation	domain
DUF1168	PF06658.12	gi|410670747|ref|YP_006923118.1|	-	0.17	11.7	4.6	0.53	10.1	4.6	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1168)
DUF4065	PF13274.6	gi|410670747|ref|YP_006923118.1|	-	0.4	11.6	3.4	90	4.0	3.4	3.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4065)
Peptidase_S46	PF10459.9	gi|410670747|ref|YP_006923118.1|	-	6.5	5.3	12.3	1.8	7.1	4.2	2.2	1	1	1	2	2	2	0	Peptidase	S46
Tropomyosin_1	PF12718.7	gi|410670747|ref|YP_006923118.1|	-	7.8	6.7	24.4	0.14	12.3	0.6	4.1	3	1	1	4	4	4	0	Tropomyosin	like
PPDK_N	PF01326.19	gi|410670748|ref|YP_006923119.1|	-	3.8e-117	391.2	0.0	5.5e-117	390.7	0.0	1.2	1	0	0	1	1	1	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
PEP-utilizers_C	PF02896.18	gi|410670748|ref|YP_006923119.1|	-	6e-59	199.5	0.0	1e-58	198.8	0.0	1.3	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilizers	PF00391.23	gi|410670748|ref|YP_006923119.1|	-	2.3e-25	88.1	0.9	6.6e-25	86.6	0.9	1.9	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
Cellulose_synt	PF03552.14	gi|410670748|ref|YP_006923119.1|	-	0.16	10.4	0.0	0.38	9.2	0.0	1.5	2	0	0	2	2	2	0	Cellulose	synthase
DnaJ	PF00226.31	gi|410670748|ref|YP_006923119.1|	-	0.16	12.1	0.0	0.78	9.9	0.0	2.1	2	0	0	2	2	2	0	DnaJ	domain
Sod_Fe_C	PF02777.18	gi|410670750|ref|YP_006923121.1|	-	5e-33	113.3	0.3	1.4e-32	111.8	0.1	1.7	2	0	0	2	2	2	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Sod_Fe_N	PF00081.22	gi|410670750|ref|YP_006923121.1|	-	2.8e-26	91.8	2.4	5e-26	91.0	2.4	1.4	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
HATPase_c	PF02518.26	gi|410670751|ref|YP_006923122.1|	-	1.9e-29	102.4	0.1	8.4e-29	100.3	0.0	2.2	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
dCache_1	PF02743.18	gi|410670751|ref|YP_006923122.1|	-	5.2e-27	95.2	1.9	2.9e-26	92.8	1.3	2.2	2	0	0	2	2	2	1	Cache	domain
HisKA	PF00512.25	gi|410670751|ref|YP_006923122.1|	-	2.3e-21	75.6	0.6	8.4e-21	73.8	0.2	2.2	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_3	PF08447.12	gi|410670751|ref|YP_006923122.1|	-	3.6e-18	65.6	0.1	7.6e-18	64.6	0.1	1.6	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|410670751|ref|YP_006923122.1|	-	4.4e-05	23.7	0.1	0.00013	22.2	0.1	1.8	1	0	0	1	1	1	1	PAS	domain
HATPase_c_2	PF13581.6	gi|410670751|ref|YP_006923122.1|	-	0.011	15.7	0.0	0.023	14.7	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
PAS_4	PF08448.10	gi|410670751|ref|YP_006923122.1|	-	0.017	15.4	0.0	0.038	14.3	0.0	1.6	1	0	0	1	1	1	0	PAS	fold
PAS	PF00989.25	gi|410670751|ref|YP_006923122.1|	-	0.023	14.7	0.0	0.05	13.6	0.0	1.7	1	0	0	1	1	1	0	PAS	fold
HATPase_c_3	PF13589.6	gi|410670751|ref|YP_006923122.1|	-	0.051	13.4	0.3	0.34	10.7	0.0	2.2	2	0	0	2	2	2	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
NYD-SP28	PF14772.6	gi|410670751|ref|YP_006923122.1|	-	0.054	13.6	0.3	0.054	13.6	0.3	2.4	2	0	0	2	2	2	0	Sperm	tail
TarH	PF02203.15	gi|410670751|ref|YP_006923122.1|	-	0.054	13.4	3.9	0.13	12.1	3.9	1.6	1	0	0	1	1	1	0	Tar	ligand	binding	domain	homologue
PAS_11	PF14598.6	gi|410670751|ref|YP_006923122.1|	-	0.068	13.3	0.0	0.26	11.4	0.0	1.9	2	0	0	2	2	2	0	PAS	domain
Aminotran_4	PF01063.19	gi|410670752|ref|YP_006923123.1|	-	2.7e-55	187.6	0.0	3.1e-55	187.4	0.0	1.0	1	0	0	1	1	1	1	Amino-transferase	class	IV
DUF4271	PF14093.6	gi|410670754|ref|YP_006923125.1|	-	0.00017	21.6	0.5	0.00019	21.4	0.5	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4271)
SafA	PF17073.5	gi|410670754|ref|YP_006923125.1|	-	0.12	12.3	0.2	0.2	11.6	0.2	1.5	1	0	0	1	1	1	0	Two-component-system	connector	protein
PBP_like	PF12727.7	gi|410670755|ref|YP_006923126.1|	-	1.5e-46	158.0	0.0	2.2e-46	157.4	0.0	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
MoeA_N	PF03453.17	gi|410670755|ref|YP_006923126.1|	-	1.3e-42	145.3	0.3	2.8e-42	144.2	0.3	1.6	2	0	0	2	2	2	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.24	gi|410670755|ref|YP_006923126.1|	-	7e-24	84.1	0.1	1.5e-23	83.1	0.1	1.6	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.15	gi|410670755|ref|YP_006923126.1|	-	5.4e-11	42.5	0.0	2.5e-10	40.4	0.0	2.2	2	0	0	2	2	2	1	MoeA	C-terminal	region	(domain	IV)
MMR_HSR1_Xtn	PF16897.5	gi|410670756|ref|YP_006923127.1|	-	8.9e-33	112.5	2.6	1.8e-32	111.5	2.6	1.5	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
MMR_HSR1	PF01926.23	gi|410670756|ref|YP_006923127.1|	-	6.1e-22	77.9	0.0	1.3e-21	76.9	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|410670756|ref|YP_006923127.1|	-	4.1e-17	62.0	0.0	7.7e-17	61.1	0.0	1.5	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.18	gi|410670756|ref|YP_006923127.1|	-	3.2e-14	52.7	1.5	7.3e-14	51.6	0.1	2.0	2	0	0	2	2	2	1	Ferrous	iron	transport	protein	B
Dynamin_N	PF00350.23	gi|410670756|ref|YP_006923127.1|	-	7.1e-06	26.2	0.3	0.12	12.4	0.2	2.7	2	1	1	3	3	3	2	Dynamin	family
RsgA_GTPase	PF03193.16	gi|410670756|ref|YP_006923127.1|	-	0.00012	22.1	1.6	0.018	14.9	0.1	2.6	2	1	0	2	2	2	2	RsgA	GTPase
ATP_bind_1	PF03029.17	gi|410670756|ref|YP_006923127.1|	-	0.0045	16.8	0.3	0.23	11.2	0.1	2.5	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
Arf	PF00025.21	gi|410670756|ref|YP_006923127.1|	-	0.005	16.3	0.8	0.037	13.5	0.2	2.4	1	1	1	2	2	2	1	ADP-ribosylation	factor	family
GTP_EFTU	PF00009.27	gi|410670756|ref|YP_006923127.1|	-	0.016	14.8	4.9	1.7	8.1	2.1	3.3	1	1	1	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
SRPRB	PF09439.10	gi|410670756|ref|YP_006923127.1|	-	0.064	12.7	0.0	0.12	11.8	0.0	1.4	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
MeaB	PF03308.16	gi|410670756|ref|YP_006923127.1|	-	0.066	12.2	0.6	0.19	10.7	0.1	1.9	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
cobW	PF02492.19	gi|410670756|ref|YP_006923127.1|	-	0.075	12.6	1.3	2.2	7.9	0.1	2.5	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_16	PF13191.6	gi|410670756|ref|YP_006923127.1|	-	0.16	12.3	0.0	0.45	10.9	0.1	1.7	2	0	0	2	2	2	0	AAA	ATPase	domain
DUF5050	PF16472.5	gi|410670758|ref|YP_006923129.1|	-	3.9e-06	26.3	8.2	7.2e-06	25.4	7.6	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF5050)
PD40	PF07676.12	gi|410670758|ref|YP_006923129.1|	-	0.00013	21.8	0.5	1.2	9.1	0.0	3.8	3	0	0	3	3	3	2	WD40-like	Beta	Propeller	Repeat
FAINT	PF04385.15	gi|410670758|ref|YP_006923129.1|	-	0.32	11.1	0.1	0.32	11.1	0.1	4.1	5	0	0	5	5	5	0	Domain	of	unknown	function,	DUF529
DUF2115	PF09888.9	gi|410670759|ref|YP_006923130.1|	-	5.5e-49	166.8	0.1	6.1e-49	166.7	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2115)
7tm_6	PF02949.20	gi|410670760|ref|YP_006923131.1|	-	1.8	7.5	5.9	2.8	6.9	5.9	1.3	1	0	0	1	1	1	0	7tm	Odorant	receptor
DUF2207	PF09972.9	gi|410670760|ref|YP_006923131.1|	-	2.3	6.9	4.0	2.9	6.6	4.0	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF4405	PF14358.6	gi|410670760|ref|YP_006923131.1|	-	2.4	8.8	8.4	10	6.8	2.7	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4405)
Tetraspanin	PF00335.20	gi|410670760|ref|YP_006923131.1|	-	3.5	7.3	7.0	0.4	10.4	1.0	2.0	1	1	0	2	2	2	0	Tetraspanin	family
CMD	PF02627.20	gi|410670761|ref|YP_006923132.1|	-	3.2e-11	43.1	0.0	4.2e-11	42.8	0.0	1.2	1	0	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
FliG_M	PF14841.6	gi|410670761|ref|YP_006923132.1|	-	0.026	14.8	0.1	0.1	12.8	0.1	1.8	1	1	0	1	1	1	0	FliG	middle	domain
PPR	PF01535.20	gi|410670761|ref|YP_006923132.1|	-	0.089	13.1	0.0	11	6.5	0.0	2.8	2	0	0	2	2	2	0	PPR	repeat
DUF1294	PF06961.13	gi|410670762|ref|YP_006923133.1|	-	8.6e-25	86.7	1.6	1.2e-24	86.3	1.6	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1294)
SelR	PF01641.18	gi|410670764|ref|YP_006923135.1|	-	1.9e-54	182.9	0.2	2.2e-54	182.7	0.2	1.0	1	0	0	1	1	1	1	SelR	domain
HNH_5	PF14279.6	gi|410670764|ref|YP_006923135.1|	-	0.01	15.7	0.1	0.25	11.3	0.0	2.2	2	0	0	2	2	2	0	HNH	endonuclease
zinc_ribbon_10	PF10058.9	gi|410670764|ref|YP_006923135.1|	-	0.011	15.4	0.9	0.61	9.9	0.0	2.2	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
TF_Zn_Ribbon	PF08271.12	gi|410670764|ref|YP_006923135.1|	-	0.012	15.1	1.3	4.6	6.9	0.0	2.7	2	1	1	3	3	3	0	TFIIB	zinc-binding
Yippee-Mis18	PF03226.14	gi|410670764|ref|YP_006923135.1|	-	0.015	15.5	0.1	0.035	14.3	0.1	1.6	1	1	0	1	1	1	0	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
zf_UBZ	PF18439.1	gi|410670764|ref|YP_006923135.1|	-	0.039	13.6	2.6	5.3	6.7	0.1	2.7	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
GFA	PF04828.14	gi|410670764|ref|YP_006923135.1|	-	0.052	13.9	0.2	4.4	7.7	0.0	2.2	2	0	0	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
C1_2	PF03107.16	gi|410670764|ref|YP_006923135.1|	-	0.082	13.2	0.7	0.71	10.2	0.1	2.2	2	0	0	2	2	2	0	C1	domain
HECT_2	PF09814.9	gi|410670764|ref|YP_006923135.1|	-	0.096	11.5	0.3	1.1	8.1	0.0	1.9	1	1	1	2	2	2	0	HECT-like	Ubiquitin-conjugating	enzyme	(E2)-binding
DZR	PF12773.7	gi|410670764|ref|YP_006923135.1|	-	0.2	11.7	1.5	2.5	8.2	1.5	2.3	1	1	0	1	1	1	0	Double	zinc	ribbon
iPGM_N	PF06415.13	gi|410670766|ref|YP_006923137.1|	-	6.4e-83	277.5	0.1	8.8e-83	277.0	0.1	1.2	1	0	0	1	1	1	1	BPG-independent	PGAM	N-terminus	(iPGM_N)
Metalloenzyme	PF01676.18	gi|410670766|ref|YP_006923137.1|	-	1.5e-75	253.8	0.0	1.7e-75	253.6	0.0	1.0	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Phosphodiest	PF01663.22	gi|410670766|ref|YP_006923137.1|	-	0.02	14.5	0.0	0.029	13.9	0.0	1.2	1	0	0	1	1	1	0	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
PglZ	PF08665.12	gi|410670766|ref|YP_006923137.1|	-	0.055	13.6	0.0	0.095	12.8	0.0	1.3	1	0	0	1	1	1	0	PglZ	domain
XPG_I	PF00867.18	gi|410670767|ref|YP_006923138.1|	-	1.5e-26	92.5	0.1	2e-25	89.0	0.0	2.2	2	0	0	2	2	2	1	XPG	I-region
XPG_N	PF00752.17	gi|410670767|ref|YP_006923138.1|	-	1.4e-21	76.8	0.0	2.3e-21	76.1	0.0	1.4	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.20	gi|410670767|ref|YP_006923138.1|	-	2.6e-05	24.7	0.0	6.3e-05	23.5	0.0	1.7	1	0	0	1	1	1	1	5'-3'	exonuclease,	C-terminal	SAM	fold
HHH_2	PF12826.7	gi|410670767|ref|YP_006923138.1|	-	0.011	15.8	0.0	0.028	14.5	0.0	1.7	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|410670767|ref|YP_006923138.1|	-	0.08	13.6	0.1	0.41	11.3	0.0	2.2	3	0	0	3	3	3	0	Helix-hairpin-helix	domain
Phage_holin_3_6	PF07332.11	gi|410670769|ref|YP_006923140.1|	-	0.003	17.6	0.7	0.0037	17.3	0.7	1.1	1	0	0	1	1	1	1	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Wzy_C	PF04932.15	gi|410670769|ref|YP_006923140.1|	-	0.088	12.4	0.2	0.092	12.4	0.2	1.1	1	0	0	1	1	1	0	O-Antigen	ligase
DUF4175	PF13779.6	gi|410670769|ref|YP_006923140.1|	-	0.098	10.6	0.1	0.11	10.4	0.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4175)
LapA_dom	PF06305.11	gi|410670769|ref|YP_006923140.1|	-	0.12	12.2	0.1	0.12	12.2	0.1	1.6	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
SPP	PF06550.11	gi|410670770|ref|YP_006923141.1|	-	1.1e-104	349.9	31.3	1.3e-104	349.7	31.3	1.0	1	0	0	1	1	1	1	Signal-peptide	peptidase,	presenilin	aspartyl	protease
TMEM251	PF15190.6	gi|410670770|ref|YP_006923141.1|	-	2	8.4	7.3	0.39	10.7	3.1	2.0	2	1	0	2	2	2	0	Transmembrane	protein	251
CMD	PF02627.20	gi|410670771|ref|YP_006923142.1|	-	2.4e-12	46.7	0.1	3.7e-12	46.1	0.1	1.4	1	0	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
PIN_5	PF08745.11	gi|410670771|ref|YP_006923142.1|	-	0.094	12.1	0.4	0.11	11.9	0.4	1.1	1	0	0	1	1	1	0	PINc	domain	ribonuclease
MCR_C	PF04609.12	gi|410670772|ref|YP_006923143.1|	-	1.3e-124	414.7	0.1	1.5e-124	414.5	0.1	1.0	1	0	0	1	1	1	1	Methyl-coenzyme	M	reductase	operon	protein	C
UPF0146	PF03686.13	gi|410670772|ref|YP_006923143.1|	-	0.1	12.5	0.0	0.3	11.0	0.0	1.8	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0146)
DUF2113	PF09886.9	gi|410670773|ref|YP_006923144.1|	-	2.5e-67	225.8	0.1	2.8e-67	225.6	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2113)
PH	PF00169.29	gi|410670773|ref|YP_006923144.1|	-	0.13	12.8	0.0	0.17	12.4	0.0	1.2	1	0	0	1	1	1	0	PH	domain
BcrAD_BadFG	PF01869.20	gi|410670774|ref|YP_006923145.1|	-	1.3e-58	198.6	3.9	1.9e-58	198.1	3.9	1.2	1	0	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
Peptidase_M22	PF00814.25	gi|410670774|ref|YP_006923145.1|	-	0.00074	19.3	0.1	0.018	14.8	0.1	2.3	1	1	0	1	1	1	1	Glycoprotease	family
FtsA	PF14450.6	gi|410670774|ref|YP_006923145.1|	-	0.002	18.5	0.3	0.024	15.0	0.3	2.4	1	1	0	1	1	1	1	Cell	division	protein	FtsA
FGGY_N	PF00370.21	gi|410670774|ref|YP_006923145.1|	-	0.032	13.8	0.3	2.1	7.8	0.3	2.4	1	1	0	1	1	1	0	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
Hydant_A_N	PF05378.13	gi|410670774|ref|YP_006923145.1|	-	0.074	12.7	4.2	0.048	13.4	1.2	2.1	2	0	0	2	2	2	0	Hydantoinase/oxoprolinase	N-terminal	region
DUF4934	PF16288.5	gi|410670774|ref|YP_006923145.1|	-	0.11	12.4	0.0	0.23	11.4	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4934)
DUF2112	PF09885.9	gi|410670775|ref|YP_006923146.1|	-	3.1e-64	215.3	0.2	3.5e-64	215.1	0.2	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2112)
GreA_GreB	PF01272.19	gi|410670775|ref|YP_006923146.1|	-	0.079	12.9	0.1	0.19	11.7	0.0	1.7	2	0	0	2	2	2	0	Transcription	elongation	factor,	GreA/GreB,	C-term
Hepar_II_III_N	PF16889.5	gi|410670775|ref|YP_006923146.1|	-	0.18	11.1	0.0	0.21	10.8	0.0	1.1	1	0	0	1	1	1	0	Heparinase	II/III	N-terminus
DUF2102	PF09875.9	gi|410670776|ref|YP_006923147.1|	-	1.7e-40	136.9	0.0	2.3e-40	136.5	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2102)
PASTA	PF03793.19	gi|410670777|ref|YP_006923148.1|	-	0.028	14.3	0.0	0.087	12.7	0.0	1.9	1	0	0	1	1	1	0	PASTA	domain
ABC_tran	PF00005.27	gi|410670778|ref|YP_006923149.1|	-	6.2e-49	166.0	0.0	4e-24	85.7	0.0	2.4	2	0	0	2	2	2	2	ABC	transporter
SMC_N	PF02463.19	gi|410670778|ref|YP_006923149.1|	-	2.2e-06	27.2	1.4	0.075	12.4	0.0	3.1	3	0	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
PRK	PF00485.18	gi|410670778|ref|YP_006923149.1|	-	0.00038	20.2	0.1	0.53	10.0	0.1	2.5	2	0	0	2	2	2	2	Phosphoribulokinase	/	Uridine	kinase	family
RsgA_GTPase	PF03193.16	gi|410670778|ref|YP_006923149.1|	-	0.00052	20.0	1.0	0.5	10.3	0.1	2.6	2	0	0	2	2	2	2	RsgA	GTPase
AAA_29	PF13555.6	gi|410670778|ref|YP_006923149.1|	-	0.00085	19.0	0.9	1.4	8.8	0.1	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|410670778|ref|YP_006923149.1|	-	0.00099	18.9	0.4	0.19	11.4	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|410670778|ref|YP_006923149.1|	-	0.0018	18.8	1.8	0.32	11.5	0.1	3.5	3	1	0	3	3	3	1	AAA	domain
MobB	PF03205.14	gi|410670778|ref|YP_006923149.1|	-	0.0026	17.7	0.2	0.79	9.6	0.0	2.5	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ATP-synt_ab	PF00006.25	gi|410670778|ref|YP_006923149.1|	-	0.022	14.4	0.1	0.71	9.5	0.0	2.3	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
T2SSF	PF00482.23	gi|410670778|ref|YP_006923149.1|	-	0.024	14.6	0.3	0.45	10.5	0.1	2.3	2	0	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	F
SDH_sah	PF01972.16	gi|410670778|ref|YP_006923149.1|	-	0.025	13.6	3.5	0.037	13.0	0.5	2.3	2	1	0	2	2	2	0	Serine	dehydrogenase	proteinase
AAA_16	PF13191.6	gi|410670778|ref|YP_006923149.1|	-	0.03	14.7	0.6	2	8.7	0.0	2.8	2	1	0	2	2	2	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|410670778|ref|YP_006923149.1|	-	0.031	14.6	0.6	3.2	8.0	0.0	2.7	2	0	0	2	2	2	0	AAA	domain
TackOD1	PF18551.1	gi|410670778|ref|YP_006923149.1|	-	0.053	13.2	0.6	0.1	12.3	0.6	1.4	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
AAA_21	PF13304.6	gi|410670778|ref|YP_006923149.1|	-	0.064	13.0	0.0	24	4.6	0.0	3.2	2	1	1	3	3	3	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Zeta_toxin	PF06414.12	gi|410670778|ref|YP_006923149.1|	-	0.093	12.0	0.1	0.89	8.8	0.0	2.2	2	0	0	2	2	2	0	Zeta	toxin
AAA_33	PF13671.6	gi|410670778|ref|YP_006923149.1|	-	0.1	12.8	0.0	9.8	6.3	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|410670778|ref|YP_006923149.1|	-	0.1	11.8	3.7	0.5	9.5	0.1	2.6	2	1	0	2	2	2	0	NB-ARC	domain
AAA_23	PF13476.6	gi|410670778|ref|YP_006923149.1|	-	0.17	12.4	1.1	15	6.0	0.1	2.4	2	0	0	2	2	2	0	AAA	domain
DUF87	PF01935.17	gi|410670778|ref|YP_006923149.1|	-	0.17	11.9	3.3	1.8	8.6	0.2	2.7	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
OrfB_Zn_ribbon	PF07282.11	gi|410670778|ref|YP_006923149.1|	-	0.2	11.6	0.8	0.41	10.6	0.8	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
AAA	PF00004.29	gi|410670778|ref|YP_006923149.1|	-	0.39	11.1	2.6	27	5.2	0.1	3.1	3	0	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Anti-TRAP	PF15777.5	gi|410670778|ref|YP_006923149.1|	-	1.5	8.8	7.4	0.22	11.5	2.4	2.1	3	0	0	3	3	2	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Hydrolase	PF00702.26	gi|410670779|ref|YP_006923150.1|	-	1.2e-15	58.3	0.1	6.9e-15	55.9	0.1	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|410670779|ref|YP_006923150.1|	-	0.00041	20.2	0.0	0.1	12.4	0.1	2.2	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|410670779|ref|YP_006923150.1|	-	0.053	13.9	0.0	0.098	13.0	0.0	1.4	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|410670779|ref|YP_006923150.1|	-	0.22	11.6	1.0	0.36	10.9	0.2	1.8	2	0	0	2	2	2	0	HAD-hyrolase-like
Peptidase_M10	PF00413.24	gi|410670780|ref|YP_006923151.1|	-	1e-14	54.7	0.0	2.2e-14	53.6	0.0	1.5	1	1	0	1	1	1	1	Matrixin
Reprolysin_3	PF13582.6	gi|410670780|ref|YP_006923151.1|	-	5.6e-05	23.6	0.0	7.2e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Peptidase_M66	PF10462.9	gi|410670780|ref|YP_006923151.1|	-	0.00067	18.7	0.1	0.00091	18.3	0.1	1.2	1	0	0	1	1	1	1	Peptidase	M66
Astacin	PF01400.24	gi|410670780|ref|YP_006923151.1|	-	0.0036	16.9	0.0	0.0062	16.2	0.0	1.3	1	0	0	1	1	1	1	Astacin	(Peptidase	family	M12A)
Metallopep	PF12044.8	gi|410670780|ref|YP_006923151.1|	-	0.0077	14.9	0.0	0.011	14.4	0.0	1.1	1	0	0	1	1	1	1	Putative	peptidase	family
DUF4953	PF16313.5	gi|410670780|ref|YP_006923151.1|	-	0.017	14.4	0.1	0.026	13.7	0.1	1.2	1	0	0	1	1	1	0	Met-zincin
Peptidase_M57	PF12388.8	gi|410670780|ref|YP_006923151.1|	-	0.017	14.7	0.0	0.023	14.3	0.0	1.2	1	0	0	1	1	1	0	Dual-action	HEIGH	metallo-peptidase
Peptidase_M54	PF07998.11	gi|410670780|ref|YP_006923151.1|	-	0.021	14.8	0.0	0.031	14.3	0.0	1.2	1	0	0	1	1	1	0	Peptidase	family	M54
OppC_N	PF12911.7	gi|410670780|ref|YP_006923151.1|	-	0.037	14.0	0.1	0.079	13.0	0.1	1.5	1	0	0	1	1	1	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Reprolysin_4	PF13583.6	gi|410670780|ref|YP_006923151.1|	-	0.042	13.5	0.0	0.053	13.2	0.0	1.3	1	0	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_5	PF13688.6	gi|410670780|ref|YP_006923151.1|	-	0.061	13.5	0.0	0.074	13.2	0.0	1.1	1	0	0	1	1	1	0	Metallo-peptidase	family	M12
DNA_binding_1	PF01035.20	gi|410670781|ref|YP_006923152.1|	-	2.4e-27	94.9	0.0	3e-27	94.6	0.0	1.1	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
AFOR_C	PF01314.18	gi|410670782|ref|YP_006923153.1|	-	3.1e-101	339.2	0.0	4.4e-101	338.6	0.0	1.2	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|410670782|ref|YP_006923153.1|	-	1.1e-68	231.0	0.7	1.5e-68	230.6	0.7	1.2	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
eIF-5a	PF01287.20	gi|410670783|ref|YP_006923154.1|	-	3.9e-07	30.1	0.3	3.9e-07	30.1	0.3	1.7	2	0	0	2	2	2	1	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
EFP_N	PF08207.12	gi|410670783|ref|YP_006923154.1|	-	3.2e-05	23.9	0.1	6.5e-05	22.9	0.1	1.5	1	0	0	1	1	1	1	Elongation	factor	P	(EF-P)	KOW-like	domain
DUF1947	PF09183.10	gi|410670783|ref|YP_006923154.1|	-	0.072	13.4	0.3	0.45	10.8	0.3	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1947)
Arginase	PF00491.21	gi|410670784|ref|YP_006923155.1|	-	9.6e-79	264.8	0.0	1.1e-78	264.6	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
DUF2209	PF09974.9	gi|410670785|ref|YP_006923157.1|	-	0.21	11.9	3.0	0.23	11.8	1.8	1.7	2	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2209)
PCMT	PF01135.19	gi|410670788|ref|YP_006923159.1|	-	1.8e-21	76.9	0.0	1.9e-21	76.8	0.0	1.0	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Hydantoinase_B	PF02538.14	gi|410670789|ref|YP_006923160.1|	-	7.5e-211	701.0	2.6	1.1e-210	700.5	2.6	1.2	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
Hydantoinase_A	PF01968.18	gi|410670789|ref|YP_006923160.1|	-	1.4e-123	411.8	0.0	3.2e-123	410.6	0.0	1.6	1	0	0	1	1	1	1	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.13	gi|410670789|ref|YP_006923160.1|	-	1.9e-62	210.1	0.1	1.4e-60	204.1	0.0	2.8	3	0	0	3	3	3	1	Hydantoinase/oxoprolinase	N-terminal	region
DNase-RNase	PF02577.14	gi|410670790|ref|YP_006923161.1|	-	2.3e-38	130.8	0.2	2.5e-38	130.6	0.2	1.1	1	0	0	1	1	1	1	Bifunctional	nuclease
DUF1614	PF07758.11	gi|410670791|ref|YP_006923162.1|	-	1.2e-58	197.9	11.4	1.2e-58	197.9	11.4	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1614)
RuvC	PF02075.17	gi|410670792|ref|YP_006923163.1|	-	0.12	12.2	0.0	0.12	12.2	0.0	1.1	1	0	0	1	1	1	0	Crossover	junction	endodeoxyribonuclease	RuvC
DDE_Tnp_IS1	PF03400.13	gi|410670793|ref|YP_006923164.1|	-	1.2e-08	35.4	0.1	1.3e-08	35.3	0.1	1.0	1	0	0	1	1	1	1	IS1	transposase
TERT_thumb	PF17984.1	gi|410670793|ref|YP_006923164.1|	-	0.022	14.6	0.1	0.022	14.6	0.1	1.1	1	0	0	1	1	1	0	Telomerase	reverse	transcriptase	thumb	DNA	binding	domain
EPO_TPO	PF00758.18	gi|410670793|ref|YP_006923164.1|	-	0.068	13.2	0.0	0.084	12.9	0.0	1.1	1	0	0	1	1	1	0	Erythropoietin/thrombopoietin
DDE_Tnp_1	PF01609.21	gi|410670794|ref|YP_006923165.1|	-	4.4e-07	29.8	3.7	8.4e-07	28.9	3.7	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
TERT_thumb	PF17984.1	gi|410670795|ref|YP_006923166.1|	-	0.025	14.5	0.1	0.026	14.4	0.1	1.0	1	0	0	1	1	1	0	Telomerase	reverse	transcriptase	thumb	DNA	binding	domain
DDE_Tnp_IS1	PF03400.13	gi|410670795|ref|YP_006923166.1|	-	0.03	14.7	0.1	0.03	14.7	0.1	1.1	1	0	0	1	1	1	0	IS1	transposase
MEDS	PF14417.6	gi|410670798|ref|YP_006923169.1|	-	0.021	14.6	0.0	2.6	7.9	0.0	3.0	2	1	1	3	3	3	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
His_biosynth	PF00977.21	gi|410670799|ref|YP_006923170.1|	-	1.5e-88	296.1	0.2	1.8e-88	295.9	0.2	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
ThiG	PF05690.14	gi|410670799|ref|YP_006923170.1|	-	1.3e-06	27.9	0.2	0.0016	17.8	0.1	2.2	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.15	gi|410670799|ref|YP_006923170.1|	-	1.4e-06	28.0	0.0	0.0019	17.7	0.0	2.1	2	0	0	2	2	2	2	Nitronate	monooxygenase
G3P_antiterm	PF04309.12	gi|410670799|ref|YP_006923170.1|	-	2.7e-06	26.9	0.3	0.00074	19.0	0.1	2.2	2	0	0	2	2	2	2	Glycerol-3-phosphate	responsive	antiterminator
Dus	PF01207.17	gi|410670799|ref|YP_006923170.1|	-	4e-06	26.1	0.0	0.00011	21.4	0.1	2.1	2	0	0	2	2	2	1	Dihydrouridine	synthase	(Dus)
DHO_dh	PF01180.21	gi|410670799|ref|YP_006923170.1|	-	2.1e-05	23.9	0.1	0.0038	16.5	0.0	2.1	2	0	0	2	2	2	2	Dihydroorotate	dehydrogenase
TMP-TENI	PF02581.17	gi|410670799|ref|YP_006923170.1|	-	3e-05	23.4	0.1	0.022	14.1	0.0	2.3	2	0	0	2	2	2	2	Thiamine	monophosphate	synthase
IMPDH	PF00478.25	gi|410670799|ref|YP_006923170.1|	-	0.00025	20.2	0.2	0.2	10.6	0.1	2.1	2	0	0	2	2	2	2	IMP	dehydrogenase	/	GMP	reductase	domain
PcrB	PF01884.17	gi|410670799|ref|YP_006923170.1|	-	0.011	15.3	0.5	0.032	13.7	0.1	2.0	2	1	1	3	3	3	0	PcrB	family
SBP_bac_3	PF00497.20	gi|410670799|ref|YP_006923170.1|	-	0.072	12.5	0.0	0.14	11.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	3
MazG	PF03819.17	gi|410670800|ref|YP_006923171.1|	-	3.1e-17	62.5	0.0	3.8e-17	62.2	0.0	1.1	1	0	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
PRA-PH	PF01503.17	gi|410670800|ref|YP_006923171.1|	-	6e-06	26.6	0.4	9e-06	26.0	0.4	1.3	1	1	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
MazG-like	PF12643.7	gi|410670800|ref|YP_006923171.1|	-	0.00017	21.8	0.0	0.00026	21.2	0.0	1.2	1	0	0	1	1	1	1	MazG-like	family
DUF3782	PF12644.7	gi|410670800|ref|YP_006923171.1|	-	0.0069	16.5	0.0	0.011	15.9	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3782)
GvpG	PF05120.12	gi|410670800|ref|YP_006923171.1|	-	0.021	14.8	0.0	0.034	14.2	0.0	1.3	1	0	0	1	1	1	0	Gas	vesicle	protein	G
Methyltransf_25	PF13649.6	gi|410670801|ref|YP_006923172.1|	-	7.2e-21	74.7	0.0	1.8e-20	73.4	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|410670801|ref|YP_006923172.1|	-	2.3e-18	66.4	0.0	4.5e-18	65.5	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410670801|ref|YP_006923172.1|	-	2.1e-16	60.3	0.0	3.7e-16	59.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|410670801|ref|YP_006923172.1|	-	1.8e-15	56.9	0.0	2.3e-15	56.6	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|410670801|ref|YP_006923172.1|	-	1.3e-14	54.7	0.0	4.8e-14	52.9	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|410670801|ref|YP_006923172.1|	-	1.4e-14	54.3	0.0	1.9e-14	53.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|410670801|ref|YP_006923172.1|	-	5.1e-08	32.9	0.0	7.2e-08	32.4	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
NodS	PF05401.11	gi|410670801|ref|YP_006923172.1|	-	9.9e-08	31.8	0.0	1.4e-07	31.3	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
CMAS	PF02353.20	gi|410670801|ref|YP_006923172.1|	-	6.8e-07	28.9	0.0	1.1e-06	28.2	0.0	1.3	1	1	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_PK	PF05891.12	gi|410670801|ref|YP_006923172.1|	-	9.9e-07	28.5	0.0	1.5e-06	27.9	0.0	1.3	1	1	0	1	1	1	1	AdoMet	dependent	proline	di-methyltransferase
RrnaAD	PF00398.20	gi|410670801|ref|YP_006923172.1|	-	1.1e-06	28.0	0.0	1.6e-06	27.4	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
tRNA_U5-meth_tr	PF05958.11	gi|410670801|ref|YP_006923172.1|	-	5e-06	25.7	0.0	7.1e-06	25.2	0.0	1.2	1	0	0	1	1	1	1	tRNA	(Uracil-5-)-methyltransferase
Methyltransf_18	PF12847.7	gi|410670801|ref|YP_006923172.1|	-	1.8e-05	24.7	0.0	3.4e-05	23.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|410670801|ref|YP_006923172.1|	-	5.6e-05	22.8	0.0	9.1e-05	22.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_4	PF02390.17	gi|410670801|ref|YP_006923172.1|	-	0.0001	21.8	0.0	0.0002	20.8	0.0	1.4	1	0	0	1	1	1	1	Putative	methyltransferase
FtsJ	PF01728.19	gi|410670801|ref|YP_006923172.1|	-	0.00028	21.1	0.0	0.00039	20.6	0.0	1.4	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
Met_10	PF02475.16	gi|410670801|ref|YP_006923172.1|	-	0.00039	20.2	0.0	0.0014	18.4	0.0	1.8	2	0	0	2	2	2	1	Met-10+	like-protein
PrmA	PF06325.13	gi|410670801|ref|YP_006923172.1|	-	0.0015	18.0	0.0	0.0025	17.2	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
TPMT	PF05724.11	gi|410670801|ref|YP_006923172.1|	-	0.0038	16.9	0.0	0.0057	16.3	0.0	1.3	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
DREV	PF05219.12	gi|410670801|ref|YP_006923172.1|	-	0.0049	16.0	0.1	0.02	14.0	0.0	2.0	2	0	0	2	2	2	1	DREV	methyltransferase
Cons_hypoth95	PF03602.15	gi|410670801|ref|YP_006923172.1|	-	0.014	15.1	0.0	0.02	14.5	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
Methyltransf_32	PF13679.6	gi|410670801|ref|YP_006923172.1|	-	0.029	14.4	0.0	0.046	13.7	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|410670801|ref|YP_006923172.1|	-	0.041	13.5	0.0	0.062	12.9	0.0	1.3	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
UPF0020	PF01170.18	gi|410670801|ref|YP_006923172.1|	-	0.05	13.3	0.0	0.19	11.4	0.0	1.9	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
UPF0146	PF03686.13	gi|410670801|ref|YP_006923172.1|	-	0.071	13.0	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0146)
TehB	PF03848.14	gi|410670801|ref|YP_006923172.1|	-	0.078	12.4	0.0	0.15	11.5	0.0	1.4	1	1	0	1	1	1	0	Tellurite	resistance	protein	TehB
Spermine_synth	PF01564.17	gi|410670801|ref|YP_006923172.1|	-	0.11	11.9	0.1	0.27	10.6	0.0	1.7	2	0	0	2	2	2	0	Spermine/spermidine	synthase	domain
MetW	PF07021.12	gi|410670801|ref|YP_006923172.1|	-	0.11	12.1	0.0	0.16	11.6	0.0	1.4	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
HTH_53	PF18606.1	gi|410670802|ref|YP_006923173.1|	-	0.05	13.3	0.0	0.057	13.1	0.0	1.1	1	0	0	1	1	1	0	Zap	helix	turn	helix	N-terminal	domain
PG_binding_1	PF01471.18	gi|410670803|ref|YP_006923174.1|	-	3e-11	43.3	0.4	4.2e-11	42.9	0.4	1.2	1	0	0	1	1	1	1	Putative	peptidoglycan	binding	domain
PLDc_2	PF13091.6	gi|410670804|ref|YP_006923175.1|	-	1.9e-14	53.7	0.0	1.7e-13	50.6	0.0	2.1	2	0	0	2	2	2	1	PLD-like	domain
PLDc	PF00614.22	gi|410670804|ref|YP_006923175.1|	-	8.1e-08	32.1	0.1	2e-05	24.5	0.1	2.8	2	0	0	2	2	2	2	Phospholipase	D	Active	site	motif
AhpC-TSA	PF00578.21	gi|410670805|ref|YP_006923176.1|	-	1.9e-29	102.1	0.0	2.1e-29	101.9	0.0	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|410670805|ref|YP_006923176.1|	-	9.3e-15	54.6	0.0	1.1e-14	54.4	0.0	1.0	1	0	0	1	1	1	1	Redoxin
SCO1-SenC	PF02630.14	gi|410670805|ref|YP_006923176.1|	-	0.18	11.7	0.0	0.26	11.2	0.0	1.2	1	0	0	1	1	1	0	SCO1/SenC
PGF-CTERM	PF18204.1	gi|410670806|ref|YP_006923177.1|	-	0.00071	19.5	0.2	0.0011	18.8	0.2	1.3	1	0	0	1	1	1	1	PGF-CTERM	motif
CARDB	PF07705.11	gi|410670806|ref|YP_006923177.1|	-	0.0018	18.5	2.4	0.015	15.6	0.2	2.5	2	0	0	2	2	2	1	CARDB
DUF4969	PF16339.5	gi|410670806|ref|YP_006923177.1|	-	0.041	14.2	0.0	0.094	13.1	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4969)
Imm15	PF15561.6	gi|410670806|ref|YP_006923177.1|	-	0.068	13.4	0.0	0.14	12.3	0.0	1.5	1	0	0	1	1	1	0	Immunity	protein	15
Pilin_N	PF07790.11	gi|410670806|ref|YP_006923177.1|	-	0.12	13.3	0.2	33	5.5	0.0	2.9	3	0	0	3	3	3	0	Archaeal	Type	IV	pilin,	N-terminal
Peptidase_U32	PF01136.19	gi|410670808|ref|YP_006923179.1|	-	3.2e-122	406.1	0.0	2e-90	302.0	0.0	2.2	2	0	0	2	2	2	2	Peptidase	family	U32
DUF3656	PF12392.8	gi|410670808|ref|YP_006923179.1|	-	5.9e-25	88.0	0.1	1.1e-24	87.1	0.1	1.5	1	0	0	1	1	1	1	Collagenase
QRPTase_C	PF01729.19	gi|410670808|ref|YP_006923179.1|	-	0.085	12.6	0.0	0.19	11.5	0.0	1.5	1	0	0	1	1	1	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
CCDC14	PF15254.6	gi|410670808|ref|YP_006923179.1|	-	0.098	11.3	0.3	0.14	10.8	0.3	1.1	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	14
Nuc_deoxyrib_tr	PF05014.15	gi|410670809|ref|YP_006923180.1|	-	5.7e-06	26.4	0.0	6.2e-06	26.3	0.0	1.1	1	0	0	1	1	1	1	Nucleoside	2-deoxyribosyltransferase
BofA	PF07441.11	gi|410670810|ref|YP_006923181.1|	-	1.1e-12	48.0	24.2	1.3e-12	47.8	24.2	1.0	1	0	0	1	1	1	1	SigmaK-factor	processing	regulatory	protein	BofA
Apq12	PF12716.7	gi|410670810|ref|YP_006923181.1|	-	1.5	8.9	17.0	0.073	13.0	9.7	2.3	1	1	1	2	2	2	0	Nuclear	pore	assembly	and	biogenesis
Methyltransf_25	PF13649.6	gi|410670811|ref|YP_006923182.1|	-	2.8e-21	76.0	0.0	4.1e-21	75.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410670811|ref|YP_006923182.1|	-	4e-21	75.5	0.0	5.8e-21	75.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|410670811|ref|YP_006923182.1|	-	3.9e-15	56.0	0.0	4.6e-15	55.7	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|410670811|ref|YP_006923182.1|	-	2.7e-12	47.3	0.0	4e-12	46.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|410670811|ref|YP_006923182.1|	-	3.1e-12	46.7	0.0	4.1e-12	46.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|410670811|ref|YP_006923182.1|	-	3.9e-07	29.7	0.0	4.9e-07	29.3	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Ubie_methyltran	PF01209.18	gi|410670811|ref|YP_006923182.1|	-	6.4e-07	28.9	0.0	8.4e-07	28.6	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MetW	PF07021.12	gi|410670811|ref|YP_006923182.1|	-	1e-06	28.5	0.0	2.2e-06	27.4	0.0	1.5	1	1	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
CheR	PF01739.18	gi|410670811|ref|YP_006923182.1|	-	5.9e-05	22.6	0.1	0.01	15.3	0.0	2.6	1	1	1	2	2	2	1	CheR	methyltransferase,	SAM	binding	domain
MTS	PF05175.14	gi|410670811|ref|YP_006923182.1|	-	0.00038	20.1	0.0	0.00055	19.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_9	PF08003.11	gi|410670811|ref|YP_006923182.1|	-	0.00068	18.6	0.0	0.0009	18.3	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
TehB	PF03848.14	gi|410670811|ref|YP_006923182.1|	-	0.0015	18.0	0.0	0.0017	17.8	0.0	1.1	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_29	PF03141.16	gi|410670811|ref|YP_006923182.1|	-	0.012	14.2	0.0	0.015	13.8	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_8	PF05148.15	gi|410670811|ref|YP_006923182.1|	-	0.016	15.1	0.0	0.072	12.9	0.0	1.9	1	1	0	1	1	1	0	Hypothetical	methyltransferase
PrmA	PF06325.13	gi|410670811|ref|YP_006923182.1|	-	0.21	10.9	0.0	0.29	10.5	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
tRNA-synt_1f	PF01921.18	gi|410670812|ref|YP_006923183.1|	-	5.1e-123	410.5	0.0	8.8e-123	409.8	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1g	PF09334.11	gi|410670812|ref|YP_006923183.1|	-	1e-09	37.6	0.0	6.4e-05	21.9	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.19	gi|410670812|ref|YP_006923183.1|	-	3.4e-06	26.6	0.0	0.085	12.2	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
Fe_dep_repress	PF01325.19	gi|410670813|ref|YP_006923184.1|	-	1.4e-18	66.8	0.0	2.4e-18	66.1	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Fe_dep_repr_C	PF02742.15	gi|410670813|ref|YP_006923184.1|	-	8.5e-16	57.8	0.2	1.5e-15	57.0	0.2	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
MarR_2	PF12802.7	gi|410670813|ref|YP_006923184.1|	-	9.2e-07	28.7	0.0	1.7e-06	27.8	0.0	1.4	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|410670813|ref|YP_006923184.1|	-	7.2e-06	25.8	0.0	1.4e-05	24.9	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|410670813|ref|YP_006923184.1|	-	7.4e-05	22.2	0.0	0.00025	20.5	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.20	gi|410670813|ref|YP_006923184.1|	-	0.00023	21.5	0.0	0.0012	19.1	0.0	2.0	1	1	0	2	2	2	1	Transcriptional	regulator
TrmB	PF01978.19	gi|410670813|ref|YP_006923184.1|	-	0.00023	21.0	0.0	0.00043	20.1	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|410670813|ref|YP_006923184.1|	-	0.00036	20.3	0.0	0.00055	19.7	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|410670813|ref|YP_006923184.1|	-	0.0013	18.6	0.1	0.0045	16.9	0.0	1.9	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|410670813|ref|YP_006923184.1|	-	0.0024	17.5	0.0	0.0046	16.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_23	PF13384.6	gi|410670813|ref|YP_006923184.1|	-	0.0038	17.0	0.0	0.014	15.2	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_5	PF01022.20	gi|410670813|ref|YP_006923184.1|	-	0.0041	17.0	0.0	0.0076	16.1	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|410670813|ref|YP_006923184.1|	-	0.0064	16.4	0.0	0.013	15.4	0.0	1.5	1	1	0	1	1	1	1	HTH	domain
HTH_45	PF14947.6	gi|410670813|ref|YP_006923184.1|	-	0.01	15.8	0.0	0.017	15.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_6	PF01418.17	gi|410670813|ref|YP_006923184.1|	-	0.014	15.4	0.0	0.03	14.3	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
v110	PF01639.17	gi|410670813|ref|YP_006923184.1|	-	0.021	14.7	0.1	0.03	14.2	0.1	1.4	1	0	0	1	1	1	0	Viral	family	110
LexA_DNA_bind	PF01726.16	gi|410670813|ref|YP_006923184.1|	-	0.045	13.5	0.1	0.31	10.8	0.0	2.1	2	1	0	2	2	2	0	LexA	DNA	binding	domain
HTH_27	PF13463.6	gi|410670813|ref|YP_006923184.1|	-	0.062	13.8	0.0	0.16	12.5	0.0	1.7	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_1	PF00126.27	gi|410670813|ref|YP_006923184.1|	-	0.083	12.9	0.0	0.28	11.2	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_AsnC-type	PF13404.6	gi|410670813|ref|YP_006923184.1|	-	0.095	12.6	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Sigma70_r3	PF04539.16	gi|410670813|ref|YP_006923184.1|	-	0.098	12.8	0.0	0.17	12.0	0.0	1.5	1	0	0	1	1	1	0	Sigma-70	region	3
TPD	PF14811.6	gi|410670815|ref|YP_006923186.1|	-	7.7e-51	171.5	0.1	1.2e-50	170.9	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	TPD	sequence-motif
HhH-GPD	PF00730.25	gi|410670816|ref|YP_006923187.1|	-	2.1e-12	47.5	0.0	2.6e-12	47.1	0.0	1.1	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|410670816|ref|YP_006923187.1|	-	0.048	13.6	0.0	0.11	12.4	0.0	1.6	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|410670816|ref|YP_006923187.1|	-	0.058	14.0	0.0	0.26	11.9	0.0	1.9	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
ID	PF18543.1	gi|410670817|ref|YP_006923188.1|	-	0.016	15.2	0.0	0.085	12.9	0.0	1.9	2	0	0	2	2	2	0	Intracellular	delivery	domain
Pribosyltran_N	PF13793.6	gi|410670818|ref|YP_006923189.1|	-	3e-21	75.5	0.0	3.8e-20	72.0	0.0	2.1	2	0	0	2	2	2	1	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
Pribosyltran	PF00156.27	gi|410670818|ref|YP_006923189.1|	-	9.7e-18	64.2	0.2	1.4e-17	63.6	0.2	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
Pribosyl_synth	PF14572.6	gi|410670818|ref|YP_006923189.1|	-	3.7e-08	33.6	1.0	6.8e-08	32.8	1.0	1.4	1	0	0	1	1	1	1	Phosphoribosyl	synthetase-associated	domain
UPRTase	PF14681.6	gi|410670818|ref|YP_006923189.1|	-	2e-05	24.1	0.4	5.1e-05	22.8	0.1	1.7	2	0	0	2	2	2	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|410670818|ref|YP_006923189.1|	-	0.02	14.4	0.1	0.036	13.6	0.1	1.4	1	0	0	1	1	1	0	Phosphoribosyl	transferase
MoaC	PF01967.21	gi|410670819|ref|YP_006923190.1|	-	2.5e-49	166.9	1.0	2.9e-49	166.7	1.0	1.0	1	0	0	1	1	1	1	MoaC	family
CRM1_repeat	PF18777.1	gi|410670820|ref|YP_006923191.1|	-	0.017	14.6	0.1	0.028	13.9	0.1	1.3	1	0	0	1	1	1	0	Chromosome	region	maintenance	or	exportin	repeat
Carb_kinase	PF01256.17	gi|410670821|ref|YP_006923192.1|	-	1e-53	182.3	0.1	1.3e-53	181.9	0.1	1.1	1	0	0	1	1	1	1	Carbohydrate	kinase
YjeF_N	PF03853.15	gi|410670821|ref|YP_006923192.1|	-	4.8e-37	127.5	0.1	1.3e-36	126.0	0.0	1.8	2	0	0	2	2	2	1	YjeF-related	protein	N-terminus
HK	PF02110.15	gi|410670821|ref|YP_006923192.1|	-	1.7e-06	27.6	0.1	3e-06	26.8	0.1	1.3	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
TrkA_N	PF02254.18	gi|410670822|ref|YP_006923193.1|	-	4.9e-16	59.0	2.6	8.7e-16	58.2	1.0	2.2	2	0	0	2	2	2	1	TrkA-N	domain
DHHA1	PF02272.19	gi|410670822|ref|YP_006923193.1|	-	1.8e-14	54.3	0.5	7.6e-14	52.3	0.1	2.2	3	0	0	3	3	3	1	DHHA1	domain
DHH	PF01368.20	gi|410670822|ref|YP_006923193.1|	-	2.4e-14	53.4	2.2	4.3e-14	52.6	0.9	2.1	2	0	0	2	2	2	1	DHH	family
CxxCxxCC	PF03692.15	gi|410670823|ref|YP_006923194.1|	-	1.3e-09	38.7	1.8	1.3e-08	35.4	1.8	2.2	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
Aconitase	PF00330.20	gi|410670824|ref|YP_006923195.1|	-	1.4e-93	314.4	2.3	6e-61	206.8	0.2	2.2	1	1	1	2	2	2	2	Aconitase	family	(aconitate	hydratase)
DUF521	PF04412.13	gi|410670824|ref|YP_006923195.1|	-	0.05	12.3	0.0	0.083	11.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF521)
PRA-PH	PF01503.17	gi|410670825|ref|YP_006923196.1|	-	3.3e-19	69.1	0.4	3.8e-19	68.9	0.4	1.0	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
MazG	PF03819.17	gi|410670825|ref|YP_006923196.1|	-	2.1e-06	27.8	2.1	3.4e-06	27.2	2.1	1.4	1	0	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
MazG-like	PF12643.7	gi|410670825|ref|YP_006923196.1|	-	0.032	14.5	0.8	0.032	14.5	0.8	1.8	2	1	0	2	2	2	0	MazG-like	family
HrcA_DNA-bdg	PF03444.15	gi|410670826|ref|YP_006923197.1|	-	5.2e-36	122.2	0.2	1.2e-35	121.0	0.2	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
CBS	PF00571.28	gi|410670826|ref|YP_006923197.1|	-	8.9e-20	70.9	0.7	9.8e-09	35.5	0.1	2.5	2	0	0	2	2	2	2	CBS	domain
Rrf2	PF02082.20	gi|410670826|ref|YP_006923197.1|	-	8.4e-09	35.7	0.0	1.8e-08	34.6	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_11	PF08279.12	gi|410670826|ref|YP_006923197.1|	-	1.3e-06	28.2	0.1	2.6e-06	27.3	0.1	1.5	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|410670826|ref|YP_006923197.1|	-	0.0057	16.5	0.0	0.039	13.8	0.0	2.2	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Sigma70_r4_2	PF08281.12	gi|410670826|ref|YP_006923197.1|	-	0.024	14.3	0.0	0.13	11.9	0.0	2.2	3	0	0	3	3	3	0	Sigma-70,	region	4
MarR_2	PF12802.7	gi|410670826|ref|YP_006923197.1|	-	0.046	13.6	0.0	0.18	11.7	0.0	2.0	2	0	0	2	2	2	0	MarR	family
HTH_IclR	PF09339.10	gi|410670826|ref|YP_006923197.1|	-	0.053	13.3	0.0	0.086	12.7	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|410670826|ref|YP_006923197.1|	-	0.14	11.8	0.3	0.43	10.2	0.2	2.0	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
NOG1_N	PF17835.1	gi|410670827|ref|YP_006923198.1|	-	2.9e-48	163.9	0.7	4.3e-48	163.3	0.1	1.6	2	0	0	2	2	2	1	NOG1	N-terminal	helical	domain
NOG1	PF06858.14	gi|410670827|ref|YP_006923198.1|	-	8.2e-24	83.2	0.2	1.8e-23	82.1	0.2	1.6	1	0	0	1	1	1	1	Nucleolar	GTP-binding	protein	1	(NOG1)
MMR_HSR1	PF01926.23	gi|410670827|ref|YP_006923198.1|	-	1.7e-17	63.6	0.0	3.9e-17	62.4	0.0	1.7	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|410670827|ref|YP_006923198.1|	-	6.5e-10	38.7	0.0	1.1e-09	37.9	0.0	1.4	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Arf	PF00025.21	gi|410670827|ref|YP_006923198.1|	-	0.0086	15.6	0.1	0.17	11.3	0.1	2.7	1	1	0	1	1	1	1	ADP-ribosylation	factor	family
RsgA_GTPase	PF03193.16	gi|410670827|ref|YP_006923198.1|	-	0.062	13.2	0.5	0.56	10.1	0.0	2.7	3	1	0	3	3	3	0	RsgA	GTPase
Aminotran_1_2	PF00155.21	gi|410670828|ref|YP_006923199.1|	-	3.7e-69	233.6	0.0	4.2e-69	233.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|410670828|ref|YP_006923199.1|	-	3.9e-12	46.2	0.0	6.5e-12	45.4	0.0	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.19	gi|410670828|ref|YP_006923199.1|	-	1.9e-10	40.3	0.0	2.7e-10	39.8	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|410670828|ref|YP_006923199.1|	-	7.4e-08	31.3	0.0	1e-07	30.8	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.21	gi|410670828|ref|YP_006923199.1|	-	0.0051	16.1	0.0	0.0064	15.8	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
AP_endonuc_2	PF01261.24	gi|410670828|ref|YP_006923199.1|	-	0.13	11.7	0.0	0.69	9.3	0.0	2.1	2	0	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
DUF1611_N	PF17396.2	gi|410670828|ref|YP_006923199.1|	-	0.16	12.2	0.0	0.88	9.8	0.0	2.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1611_N)	Rossmann-like	domain
SIS	PF01380.22	gi|410670829|ref|YP_006923200.1|	-	5.1e-18	65.2	0.0	8.5e-18	64.5	0.0	1.3	1	0	0	1	1	1	1	SIS	domain
SIS_2	PF13580.6	gi|410670829|ref|YP_006923200.1|	-	1.4e-06	28.3	4.2	0.00027	21.0	1.0	2.3	1	1	1	2	2	2	2	SIS	domain
PRMT5	PF05185.16	gi|410670829|ref|YP_006923200.1|	-	0.22	11.3	0.6	1.1	9.1	0.1	2.0	1	1	1	2	2	2	0	PRMT5	arginine-N-methyltransferase
DUF2073	PF09846.9	gi|410670831|ref|YP_006923202.1|	-	1.7e-44	150.0	0.8	1.9e-44	149.8	0.8	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2073)
MMR_HSR1	PF01926.23	gi|410670832|ref|YP_006923203.1|	-	1.1e-15	57.7	0.0	1.5e-15	57.2	0.0	1.2	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP_EFTU	PF00009.27	gi|410670832|ref|YP_006923203.1|	-	2.7e-15	56.4	1.1	1.9e-06	27.5	0.1	2.9	2	1	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
RsgA_GTPase	PF03193.16	gi|410670832|ref|YP_006923203.1|	-	1.3e-07	31.6	0.1	0.015	15.2	0.0	2.1	2	0	0	2	2	2	2	RsgA	GTPase
Arf	PF00025.21	gi|410670832|ref|YP_006923203.1|	-	1.4e-06	27.9	0.0	0.014	14.8	0.0	2.3	2	0	0	2	2	2	2	ADP-ribosylation	factor	family
Roc	PF08477.13	gi|410670832|ref|YP_006923203.1|	-	9e-05	22.7	0.0	0.0067	16.6	0.0	2.2	2	0	0	2	2	2	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
SRPRB	PF09439.10	gi|410670832|ref|YP_006923203.1|	-	0.00012	21.6	0.0	0.055	12.9	0.0	2.4	2	1	0	2	2	2	2	Signal	recognition	particle	receptor	beta	subunit
FeoB_N	PF02421.18	gi|410670832|ref|YP_006923203.1|	-	0.00012	21.7	0.8	0.0028	17.2	0.8	2.6	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
AAA_16	PF13191.6	gi|410670832|ref|YP_006923203.1|	-	0.00031	21.1	0.0	0.00045	20.7	0.0	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
MMR_HSR1_Xtn	PF16897.5	gi|410670832|ref|YP_006923203.1|	-	0.00044	20.2	0.0	0.00073	19.5	0.0	1.5	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
AAA_24	PF13479.6	gi|410670832|ref|YP_006923203.1|	-	0.00051	19.8	0.1	0.0025	17.6	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
Septin	PF00735.18	gi|410670832|ref|YP_006923203.1|	-	0.00073	18.9	0.0	0.0009	18.6	0.0	1.2	1	0	0	1	1	1	1	Septin
Ras	PF00071.22	gi|410670832|ref|YP_006923203.1|	-	0.0013	18.4	0.0	0.15	11.7	0.0	2.4	2	1	0	2	2	2	1	Ras	family
AAA	PF00004.29	gi|410670832|ref|YP_006923203.1|	-	0.0019	18.6	0.1	0.0057	17.1	0.1	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.6	gi|410670832|ref|YP_006923203.1|	-	0.01	16.4	0.0	0.036	14.6	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
TniB	PF05621.11	gi|410670832|ref|YP_006923203.1|	-	0.012	15.0	0.0	0.059	12.8	0.0	2.1	3	0	0	3	3	3	0	Bacterial	TniB	protein
ABC_tran	PF00005.27	gi|410670832|ref|YP_006923203.1|	-	0.014	15.9	0.1	0.026	15.1	0.1	1.5	1	1	0	1	1	1	0	ABC	transporter
ATPase_2	PF01637.18	gi|410670832|ref|YP_006923203.1|	-	0.016	15.2	0.1	0.03	14.2	0.1	1.7	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
NTPase_1	PF03266.15	gi|410670832|ref|YP_006923203.1|	-	0.017	15.1	0.0	0.036	14.0	0.0	1.6	1	0	0	1	1	1	0	NTPase
Parvo_NS1	PF01057.17	gi|410670832|ref|YP_006923203.1|	-	0.024	13.7	0.0	0.037	13.1	0.0	1.2	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
NB-ARC	PF00931.22	gi|410670832|ref|YP_006923203.1|	-	0.028	13.6	0.0	0.053	12.7	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
RNA_helicase	PF00910.22	gi|410670832|ref|YP_006923203.1|	-	0.043	14.2	0.0	0.08	13.3	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
MnmE_helical	PF12631.7	gi|410670832|ref|YP_006923203.1|	-	0.046	13.9	0.0	0.052	13.7	0.0	1.2	1	0	0	1	1	1	0	MnmE	helical	domain
Ribo_biogen_C	PF04034.13	gi|410670832|ref|YP_006923203.1|	-	0.051	13.3	0.0	0.078	12.7	0.0	1.3	1	0	0	1	1	1	0	Ribosome	biogenesis	protein,	C-terminal
NACHT	PF05729.12	gi|410670832|ref|YP_006923203.1|	-	0.055	13.4	0.0	0.16	11.8	0.0	1.9	1	1	0	1	1	1	0	NACHT	domain
Dynamin_N	PF00350.23	gi|410670832|ref|YP_006923203.1|	-	0.067	13.2	0.0	13	5.8	0.0	2.4	2	0	0	2	2	2	0	Dynamin	family
AAA_22	PF13401.6	gi|410670832|ref|YP_006923203.1|	-	0.082	13.2	0.0	0.33	11.2	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
AIG1	PF04548.16	gi|410670832|ref|YP_006923203.1|	-	0.13	11.6	0.0	0.19	11.0	0.0	1.5	1	1	0	1	1	1	0	AIG1	family
cobW	PF02492.19	gi|410670832|ref|YP_006923203.1|	-	0.14	11.8	0.1	1.7	8.2	0.0	2.2	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
PhoU	PF01895.19	gi|410670833|ref|YP_006923204.1|	-	8.8e-22	77.4	9.7	7.3e-15	55.2	2.3	2.6	2	0	0	2	2	2	2	PhoU	domain
Herpes_UL20	PF04544.12	gi|410670834|ref|YP_006923205.1|	-	0.025	15.0	0.9	0.039	14.3	0.5	1.5	1	1	0	1	1	1	0	Herpesvirus	egress	protein	UL20
YccF	PF03733.13	gi|410670834|ref|YP_006923205.1|	-	0.22	12.2	3.7	11	6.9	0.9	2.6	2	0	0	2	2	2	0	Inner	membrane	component	domain
TRIQK	PF15168.6	gi|410670834|ref|YP_006923205.1|	-	0.68	9.9	1.8	1.7	8.6	0.7	2.2	2	1	1	3	3	3	0	Triple	QxxK/R	motif-containing	protein	family
UbiA	PF01040.18	gi|410670836|ref|YP_006923207.1|	-	2.1e-20	73.1	7.0	2.6e-20	72.8	7.0	1.0	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
DUF1724	PF08350.10	gi|410670837|ref|YP_006923208.1|	-	1.2e-21	76.6	0.4	2.8e-21	75.4	0.4	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
HTH_5	PF01022.20	gi|410670837|ref|YP_006923208.1|	-	8.4e-06	25.6	0.0	1.9e-05	24.4	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|410670837|ref|YP_006923208.1|	-	1.9e-05	24.4	0.0	3.4e-05	23.6	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|410670837|ref|YP_006923208.1|	-	0.00065	19.7	0.0	0.0013	18.8	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|410670837|ref|YP_006923208.1|	-	0.0013	18.7	0.0	0.0022	17.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_45	PF14947.6	gi|410670837|ref|YP_006923208.1|	-	0.0046	16.9	0.0	0.018	15.0	0.0	2.0	2	0	0	2	2	2	1	Winged	helix-turn-helix
HemN_C	PF06969.16	gi|410670837|ref|YP_006923208.1|	-	0.0087	16.1	0.0	0.022	14.8	0.0	1.7	1	0	0	1	1	1	1	HemN	C-terminal	domain
HTH_27	PF13463.6	gi|410670837|ref|YP_006923208.1|	-	0.014	15.9	0.0	0.025	15.0	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF1803	PF08820.10	gi|410670837|ref|YP_006923208.1|	-	0.039	14.0	0.0	0.11	12.6	0.0	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1803)
HTH_11	PF08279.12	gi|410670837|ref|YP_006923208.1|	-	0.07	13.1	0.3	0.15	12.0	0.0	1.7	2	0	0	2	2	2	0	HTH	domain
HTH_34	PF13601.6	gi|410670837|ref|YP_006923208.1|	-	0.076	13.2	0.0	0.56	10.4	0.0	2.1	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
AICARFT_IMPCHas	PF01808.18	gi|410670838|ref|YP_006923209.1|	-	4.2e-100	335.0	0.0	5.5e-100	334.6	0.0	1.1	1	0	0	1	1	1	1	AICARFT/IMPCHase	bienzyme
MGS	PF02142.22	gi|410670838|ref|YP_006923209.1|	-	4.7e-14	52.4	0.0	8.9e-14	51.5	0.0	1.5	1	0	0	1	1	1	1	MGS-like	domain
PAPS_reduct	PF01507.19	gi|410670839|ref|YP_006923210.1|	-	1.1e-44	152.5	0.0	1.7e-44	151.9	0.0	1.3	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
PUA	PF01472.20	gi|410670839|ref|YP_006923210.1|	-	9.1e-20	70.4	0.3	2e-19	69.3	0.3	1.6	1	0	0	1	1	1	1	PUA	domain
Fer4_18	PF13746.6	gi|410670839|ref|YP_006923210.1|	-	9.4e-05	22.6	5.9	0.00023	21.3	5.9	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410670839|ref|YP_006923210.1|	-	0.00014	22.4	10.6	0.006	17.1	0.2	3.5	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410670839|ref|YP_006923210.1|	-	0.0023	18.0	16.2	0.0023	18.0	12.5	2.7	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410670839|ref|YP_006923210.1|	-	0.004	17.3	25.7	0.0091	16.1	1.7	3.3	3	1	1	4	4	4	2	4Fe-4S	dicluster	domain
UPF0113	PF03657.13	gi|410670839|ref|YP_006923210.1|	-	0.032	14.5	0.1	0.11	12.7	0.0	1.9	2	0	0	2	2	2	0	UPF0113	PUA	domain
Fer4_8	PF13183.6	gi|410670839|ref|YP_006923210.1|	-	0.061	13.8	15.8	0.19	12.2	0.3	3.7	3	1	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410670839|ref|YP_006923210.1|	-	0.24	12.3	0.1	0.24	12.3	0.1	3.0	3	0	0	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_7	PF12838.7	gi|410670839|ref|YP_006923210.1|	-	6.1	7.5	26.1	0.038	14.6	15.4	2.8	2	2	1	3	3	3	0	4Fe-4S	dicluster	domain
Cas_Cas4	PF01930.17	gi|410670840|ref|YP_006923211.1|	-	7.3e-12	45.7	0.1	4.3e-09	36.7	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.7	gi|410670840|ref|YP_006923211.1|	-	0.00031	20.8	0.0	0.09	12.7	0.0	2.1	2	0	0	2	2	2	2	PD-(D/E)XK	nuclease	superfamily
HTH_3	PF01381.22	gi|410670841|ref|YP_006923212.1|	-	1.6e-07	31.3	0.0	4.5e-07	29.8	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.7	gi|410670841|ref|YP_006923212.1|	-	5e-05	23.2	0.0	0.00013	21.9	0.0	1.8	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|410670841|ref|YP_006923212.1|	-	0.0035	17.6	0.0	0.0076	16.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Phage_Mu_Gp45	PF06890.12	gi|410670841|ref|YP_006923212.1|	-	0.081	12.7	0.0	0.2	11.4	0.0	1.7	1	0	0	1	1	1	0	Bacteriophage	Mu	Gp45	protein
MqsA_antitoxin	PF15731.5	gi|410670841|ref|YP_006923212.1|	-	0.13	12.4	0.0	0.46	10.6	0.0	1.9	2	0	0	2	2	2	0	Antitoxin	component	of	bacterial	toxin-antitoxin	system,	MqsA
ACP_syn_III_C	PF08541.10	gi|410670842|ref|YP_006923213.1|	-	3.8e-10	39.8	0.0	1.2e-09	38.2	0.0	1.8	1	0	0	1	1	1	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
HMG_CoA_synt_N	PF01154.17	gi|410670842|ref|YP_006923213.1|	-	5.1e-07	29.7	0.3	6.8e-07	29.3	0.3	1.2	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	N	terminal
HMG_CoA_synt_C	PF08540.10	gi|410670842|ref|YP_006923213.1|	-	1.2e-05	25.1	0.0	0.00086	19.0	0.0	2.6	2	1	1	3	3	3	1	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
Thiolase_N	PF00108.23	gi|410670842|ref|YP_006923213.1|	-	0.00083	18.8	0.7	0.0015	18.0	0.7	1.3	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
WYL_3	PF18488.1	gi|410670842|ref|YP_006923213.1|	-	0.096	13.1	0.0	0.22	11.9	0.0	1.5	1	0	0	1	1	1	0	WYL	domain
ACP_syn_III	PF08545.10	gi|410670842|ref|YP_006923213.1|	-	0.65	9.9	5.8	0.33	10.8	1.8	2.3	2	0	0	2	2	2	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Thiolase_N	PF00108.23	gi|410670843|ref|YP_006923214.1|	-	7.9e-24	84.4	2.3	2.4e-23	82.9	2.3	1.8	1	1	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|410670843|ref|YP_006923214.1|	-	6.5e-13	48.4	2.6	1.4e-11	44.1	2.2	2.6	1	1	0	1	1	1	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|410670843|ref|YP_006923214.1|	-	3.7e-06	26.7	7.5	5.4e-05	22.9	6.8	2.6	2	1	0	2	2	2	1	Beta-ketoacyl	synthase,	N-terminal	domain
Ketoacyl-synt_C	PF02801.22	gi|410670843|ref|YP_006923214.1|	-	0.0031	17.5	1.6	0.16	12.0	0.0	3.1	3	1	0	3	3	3	1	Beta-ketoacyl	synthase,	C-terminal	domain
OB_aCoA_assoc	PF01796.17	gi|410670844|ref|YP_006923215.1|	-	2.7e-19	68.9	0.1	3.8e-19	68.5	0.1	1.2	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
DUF35_N	PF12172.8	gi|410670844|ref|YP_006923215.1|	-	3.4e-11	42.8	1.0	5.7e-11	42.1	1.0	1.4	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF1272	PF06906.11	gi|410670844|ref|YP_006923215.1|	-	0.028	14.5	0.8	0.049	13.7	0.8	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
zf-C3HC4_3	PF13920.6	gi|410670844|ref|YP_006923215.1|	-	0.086	12.7	1.5	0.13	12.1	1.5	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
CYTH	PF01928.21	gi|410670845|ref|YP_006923216.1|	-	1.7e-34	119.3	0.2	1.9e-34	119.2	0.2	1.0	1	0	0	1	1	1	1	CYTH	domain
tRNA-synt_1g	PF09334.11	gi|410670846|ref|YP_006923217.1|	-	1.7e-149	497.9	0.0	2.2e-149	497.5	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(M)
tRNA_bind	PF01588.20	gi|410670846|ref|YP_006923217.1|	-	1.2e-27	95.8	0.5	2.5e-27	94.8	0.5	1.6	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
tRNA-synt_1	PF00133.22	gi|410670846|ref|YP_006923217.1|	-	3e-22	78.7	0.0	1.2e-10	40.4	0.0	3.9	2	2	1	3	3	3	3	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|410670846|ref|YP_006923217.1|	-	1.3e-14	54.4	0.2	2.2e-14	53.7	0.2	1.4	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.19	gi|410670846|ref|YP_006923217.1|	-	1.7e-14	53.8	0.1	2e-09	37.2	0.0	2.4	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.18	gi|410670846|ref|YP_006923217.1|	-	0.0018	17.2	0.2	1.7	7.5	0.0	2.8	3	0	0	3	3	3	2	tRNA	synthetases	class	I	(K)
Apocytochr_F_N	PF16639.5	gi|410670846|ref|YP_006923217.1|	-	0.0076	16.5	0.0	0.017	15.4	0.0	1.5	1	0	0	1	1	1	1	Apocytochrome	F,	N-terminal
DUF1272	PF06906.11	gi|410670846|ref|YP_006923217.1|	-	0.043	13.9	0.3	0.11	12.6	0.3	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
TackOD1	PF18551.1	gi|410670846|ref|YP_006923217.1|	-	0.057	13.1	0.3	0.11	12.2	0.3	1.4	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
DZR	PF12773.7	gi|410670846|ref|YP_006923217.1|	-	1.1	9.4	8.2	0.66	10.0	2.8	2.3	1	1	1	2	2	2	0	Double	zinc	ribbon
zinc-ribbons_6	PF07191.12	gi|410670846|ref|YP_006923217.1|	-	3.2	7.8	6.4	10	6.2	6.4	1.8	1	1	0	1	1	1	0	zinc-ribbons
zf-ribbon_3	PF13248.6	gi|410670846|ref|YP_006923217.1|	-	9	5.9	9.6	8.1	6.0	5.5	3.0	2	1	0	3	3	3	0	zinc-ribbon	domain
Peptidase_S49	PF01343.18	gi|410670848|ref|YP_006923219.1|	-	1.5e-42	145.2	0.1	3.1e-42	144.1	0.0	1.5	1	1	0	1	1	1	1	Peptidase	family	S49
CLP_protease	PF00574.23	gi|410670848|ref|YP_006923219.1|	-	1.2e-07	31.9	0.8	8.1e-06	25.8	0.3	2.2	2	0	0	2	2	2	2	Clp	protease
Asparaginase_C	PF17763.1	gi|410670848|ref|YP_006923219.1|	-	0.0014	18.9	0.1	0.0038	17.4	0.1	1.8	1	0	0	1	1	1	1	Glutaminase/Asparaginase	C-terminal	domain
YdjM	PF04307.14	gi|410670849|ref|YP_006923220.1|	-	0.00038	19.8	3.4	0.00042	19.7	3.4	1.1	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
DUF4184	PF13803.6	gi|410670849|ref|YP_006923220.1|	-	0.0046	16.7	0.0	0.0047	16.7	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4184)
CcmD	PF04995.14	gi|410670849|ref|YP_006923220.1|	-	6.4	6.9	6.4	0.95	9.6	2.1	1.9	2	0	0	2	2	2	0	Heme	exporter	protein	D	(CcmD)
Adenine_glyco	PF03352.13	gi|410670850|ref|YP_006923221.1|	-	3.2e-81	271.3	0.0	3.7e-81	271.1	0.0	1.0	1	0	0	1	1	1	1	Methyladenine	glycosylase
HhH-GPD	PF00730.25	gi|410670850|ref|YP_006923221.1|	-	0.014	15.8	0.0	0.019	15.4	0.0	1.2	1	0	0	1	1	1	0	HhH-GPD	superfamily	base	excision	DNA	repair	protein
MA-Mit	PF09245.10	gi|410670850|ref|YP_006923221.1|	-	0.056	12.9	0.0	0.077	12.5	0.0	1.1	1	0	0	1	1	1	0	Mycoplasma	arthritidis-derived	mitogen
CDH1_2_SANT_HL1	PF18375.1	gi|410670850|ref|YP_006923221.1|	-	0.075	13.7	0.0	0.14	12.8	0.0	1.4	1	0	0	1	1	1	0	CDH1/2	SANT-Helical	linker	1
Methyltransf_11	PF08241.12	gi|410670851|ref|YP_006923222.1|	-	7.1e-16	58.6	0.0	1.4e-15	57.7	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|410670851|ref|YP_006923222.1|	-	3.7e-10	40.4	0.0	8.8e-10	39.2	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|410670851|ref|YP_006923222.1|	-	3.2e-07	30.3	0.0	7e-07	29.2	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|410670851|ref|YP_006923222.1|	-	7.1e-07	29.9	0.0	1.4e-06	29.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|410670851|ref|YP_006923222.1|	-	7e-05	22.3	0.0	0.00011	21.7	0.0	1.4	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_8	PF05148.15	gi|410670851|ref|YP_006923222.1|	-	0.00012	22.1	0.0	0.00017	21.5	0.0	1.3	1	0	0	1	1	1	1	Hypothetical	methyltransferase
Methyltransf_31	PF13847.6	gi|410670851|ref|YP_006923222.1|	-	0.00066	19.5	0.0	0.003	17.4	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
Nitroreductase	PF00881.24	gi|410670852|ref|YP_006923223.1|	-	8.1e-28	97.6	0.0	9.8e-28	97.3	0.0	1.1	1	0	0	1	1	1	1	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|410670852|ref|YP_006923223.1|	-	0.0024	17.5	0.0	0.021	14.4	0.0	2.0	2	0	0	2	2	2	1	Putative	TM	nitroreductase
IF-2B	PF01008.17	gi|410670854|ref|YP_006923225.1|	-	8.5e-85	284.4	2.4	9.6e-85	284.2	2.4	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
OrfB_Zn_ribbon	PF07282.11	gi|410670855|ref|YP_006923226.1|	-	1.6e-11	44.0	0.0	6.5e-11	42.0	0.0	2.0	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|410670855|ref|YP_006923226.1|	-	8.2e-11	42.2	0.1	1.6e-10	41.2	0.1	1.4	1	0	0	1	1	1	1	Probable	transposase
Trns_repr_metal	PF02583.17	gi|410670855|ref|YP_006923226.1|	-	0.072	13.5	0.1	0.28	11.6	0.1	2.1	1	1	0	1	1	1	0	Metal-sensitive	transcriptional	repressor
Nore1-SARAH	PF16517.5	gi|410670855|ref|YP_006923226.1|	-	0.2	11.6	0.8	0.69	9.9	0.8	2.0	1	0	0	1	1	1	0	Novel	Ras	effector	1	C-terminal	SARAH	(Sav/Rassf/Hpo)	domain
NTase_sub_bind	PF08780.11	gi|410670856|ref|YP_006923227.1|	-	1.2e-13	51.1	0.1	1.2e-13	51.1	0.1	1.0	1	0	0	1	1	1	1	Nucleotidyltransferase	substrate	binding	protein	like
DUF86	PF01934.17	gi|410670856|ref|YP_006923227.1|	-	0.0012	18.7	0.1	0.0012	18.7	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
DDE_Tnp_1	PF01609.21	gi|410670857|ref|YP_006923228.1|	-	3.4e-09	36.6	6.1	9.6e-09	35.2	6.1	1.7	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|410670858|ref|YP_006923229.1|	-	3.5e-22	78.2	0.0	7.4e-22	77.2	0.0	1.5	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|410670858|ref|YP_006923229.1|	-	4.3e-16	59.2	0.2	8.2e-16	58.3	0.2	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_4	PF13359.6	gi|410670858|ref|YP_006923229.1|	-	0.00012	21.8	0.1	0.00024	20.8	0.1	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1_3	PF13612.6	gi|410670858|ref|YP_006923229.1|	-	0.00049	20.1	0.5	0.00097	19.2	0.1	1.8	2	0	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|410670858|ref|YP_006923229.1|	-	0.0021	18.3	0.6	0.0041	17.3	0.6	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF3693	PF12472.8	gi|410670858|ref|YP_006923229.1|	-	0.13	12.0	0.0	0.25	11.0	0.0	1.4	1	0	0	1	1	1	0	Phage	related	protein
Polbeta	PF18765.1	gi|410670860|ref|YP_006923231.1|	-	4.1e-13	49.2	0.0	5.5e-13	48.8	0.0	1.1	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
NTP_transf_2	PF01909.23	gi|410670860|ref|YP_006923231.1|	-	3e-08	33.9	0.1	3.4e-08	33.7	0.1	1.1	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Peptidase_M44	PF03410.13	gi|410670860|ref|YP_006923231.1|	-	0.0097	14.5	0.0	0.011	14.3	0.0	1.0	1	0	0	1	1	1	1	Metallopeptidase	from	vaccinia	pox
DUF294	PF03445.13	gi|410670860|ref|YP_006923231.1|	-	0.11	12.3	0.0	0.15	11.9	0.0	1.2	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
DUF2252	PF10009.9	gi|410670861|ref|YP_006923232.1|	-	7.1e-137	456.6	0.1	8.2e-137	456.4	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2252)
DUF61	PF01886.16	gi|410670862|ref|YP_006923233.1|	-	1e-05	25.6	0.4	0.1	12.6	0.7	2.1	1	1	1	2	2	2	2	Protein	of	unknown	function	DUF61
Aldedh	PF00171.22	gi|410670863|ref|YP_006923234.1|	-	1.6e-150	501.7	0.1	1.7e-150	501.5	0.1	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
Vps54_N	PF10475.9	gi|410670863|ref|YP_006923234.1|	-	0.078	12.2	0.1	0.12	11.6	0.1	1.2	1	0	0	1	1	1	0	Vacuolar-sorting	protein	54,	of	GARP	complex
YoaP	PF14268.6	gi|410670865|ref|YP_006923235.1|	-	2.7e-14	52.4	0.0	4.8e-14	51.6	0.0	1.4	1	0	0	1	1	1	1	YoaP-like
Acetyltransf_1	PF00583.25	gi|410670865|ref|YP_006923235.1|	-	0.00015	22.0	0.2	0.0012	19.1	0.1	2.2	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_CG	PF14542.6	gi|410670865|ref|YP_006923235.1|	-	0.016	15.3	1.5	0.073	13.2	0.0	2.6	3	0	0	3	3	3	0	GCN5-related	N-acetyl-transferase
zf-C2HC5	PF06221.13	gi|410670865|ref|YP_006923235.1|	-	0.081	12.9	2.8	0.23	11.5	2.8	1.7	1	0	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
Acetyltransf_7	PF13508.7	gi|410670865|ref|YP_006923235.1|	-	0.13	12.7	0.1	0.33	11.4	0.1	1.7	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DUF1761	PF08570.10	gi|410670866|ref|YP_006923237.1|	-	0.31	11.3	6.2	0.79	10.0	6.2	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1761)
TssN	PF17555.2	gi|410670866|ref|YP_006923237.1|	-	1.1	8.6	10.1	1.2	8.4	10.1	1.0	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssN
MCPsignal	PF00015.21	gi|410670867|ref|YP_006923238.1|	-	2.8e-47	160.7	22.3	2.8e-47	160.7	22.3	6.2	4	2	3	7	7	7	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
PAS_3	PF08447.12	gi|410670867|ref|YP_006923238.1|	-	9.3e-21	73.9	0.0	4.6e-19	68.5	0.0	2.9	3	0	0	3	3	3	1	PAS	fold
PAS	PF00989.25	gi|410670867|ref|YP_006923238.1|	-	8.1e-13	48.4	0.5	1.5e-06	28.2	0.0	4.0	4	0	0	4	4	4	2	PAS	fold
PAS_4	PF08448.10	gi|410670867|ref|YP_006923238.1|	-	2e-12	47.3	0.0	2.4e-06	27.7	0.0	3.1	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.7	gi|410670867|ref|YP_006923238.1|	-	1e-10	41.8	1.9	0.00021	21.5	0.1	3.9	3	1	0	3	3	3	2	PAS	domain
HAMP	PF00672.25	gi|410670867|ref|YP_006923238.1|	-	1.5e-07	31.7	3.2	0.0014	18.9	0.0	6.7	6	1	1	7	7	6	1	HAMP	domain
PAS_8	PF13188.7	gi|410670867|ref|YP_006923238.1|	-	0.0078	16.2	0.0	0.036	14.1	0.0	2.1	2	0	0	2	2	1	1	PAS	domain
PAS_6	PF08348.11	gi|410670867|ref|YP_006923238.1|	-	0.012	15.4	2.3	0.21	11.5	0.0	3.5	3	0	0	3	3	3	0	YheO-like	PAS	domain
Tape_meas_lam_C	PF09718.10	gi|410670867|ref|YP_006923238.1|	-	0.038	14.1	0.3	0.038	14.1	0.3	4.9	6	1	0	6	6	6	0	Lambda	phage	tail	tape-measure	protein	(Tape_meas_lam_C)
HAMP_N3	PF18575.1	gi|410670867|ref|YP_006923238.1|	-	0.15	11.7	0.0	5.4	6.7	0.0	3.7	3	0	0	3	3	3	0	HAMP	N-terminal	domain	3
DUF948	PF06103.11	gi|410670867|ref|YP_006923238.1|	-	2.7	8.3	36.4	0.27	11.5	4.0	8.3	6	4	3	9	9	9	0	Bacterial	protein	of	unknown	function	(DUF948)
Aldedh	PF00171.22	gi|410670870|ref|YP_006923241.1|	-	2.7e-141	471.3	0.0	3e-141	471.1	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
TPP_enzyme_N	PF02776.18	gi|410670871|ref|YP_006923242.1|	-	7e-53	178.8	0.0	1.3e-52	177.8	0.0	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|410670871|ref|YP_006923242.1|	-	1.7e-38	131.8	0.1	5.5e-38	130.2	0.0	1.8	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|410670871|ref|YP_006923242.1|	-	3.8e-33	114.1	0.0	6.7e-32	110.1	0.0	2.4	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
DUF3848	PF12959.7	gi|410670871|ref|YP_006923242.1|	-	0.13	12.3	0.2	0.45	10.6	0.1	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3848)
tRNA-synt_1d	PF00750.19	gi|410670873|ref|YP_006923244.1|	-	5e-38	130.9	0.1	7.9e-38	130.3	0.1	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(R)
DALR_1	PF05746.15	gi|410670873|ref|YP_006923244.1|	-	5e-32	110.6	0.0	1.7e-31	108.9	0.0	1.9	2	0	0	2	2	2	1	DALR	anticodon	binding	domain
Arg_tRNA_synt_N	PF03485.16	gi|410670873|ref|YP_006923244.1|	-	4.3e-12	46.5	0.0	1.2e-11	45.0	0.0	1.8	1	0	0	1	1	1	1	Arginyl	tRNA	synthetase	N	terminal	domain
tRNA-synt_1f	PF01921.18	gi|410670873|ref|YP_006923244.1|	-	3.8e-05	22.8	0.1	0.035	13.0	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(K)
tRNA-synt_1e	PF01406.19	gi|410670873|ref|YP_006923244.1|	-	0.00067	19.1	0.1	0.0012	18.3	0.1	1.3	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1g	PF09334.11	gi|410670873|ref|YP_006923244.1|	-	0.004	15.9	0.1	0.87	8.3	0.1	2.6	3	0	0	3	3	3	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1	PF00133.22	gi|410670873|ref|YP_006923244.1|	-	0.091	11.0	0.0	0.15	10.3	0.0	1.2	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(I,	L,	M	and	V)
eRF1_2	PF03464.15	gi|410670874|ref|YP_006923245.1|	-	7.8e-41	139.5	0.0	1.4e-40	138.7	0.0	1.4	1	0	0	1	1	1	1	eRF1	domain	2
eRF1_3	PF03465.15	gi|410670874|ref|YP_006923245.1|	-	8.5e-34	116.4	0.0	7.7e-32	110.1	0.0	2.6	2	0	0	2	2	2	1	eRF1	domain	3
eRF1_1	PF03463.15	gi|410670874|ref|YP_006923245.1|	-	1.5e-12	47.6	0.0	2.9e-12	46.7	0.0	1.5	1	0	0	1	1	1	1	eRF1	domain	1
baeRF_family10	PF18854.1	gi|410670874|ref|YP_006923245.1|	-	9.1e-12	45.4	0.0	2.2e-11	44.2	0.0	1.6	2	0	0	2	2	2	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
acVLRF1	PF18859.1	gi|410670874|ref|YP_006923245.1|	-	5.5e-11	42.9	0.0	1.1e-10	41.9	0.0	1.5	1	0	0	1	1	1	1	Actinobacteria/chloroflexi	VLRF1	release	factor
Rad50_zn_hook	PF04423.14	gi|410670874|ref|YP_006923245.1|	-	0.00036	20.3	0.4	0.028	14.2	0.0	3.3	3	0	0	3	3	3	1	Rad50	zinc	hook	motif
DNA_ligase_ZBD	PF03119.16	gi|410670874|ref|YP_006923245.1|	-	0.03	14.4	1.1	0.056	13.5	0.2	1.9	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
TBPIP	PF07106.13	gi|410670874|ref|YP_006923245.1|	-	0.51	10.3	2.7	3.8	7.5	0.1	2.7	3	0	0	3	3	3	0	TBPIP/Hop2	winged	helix	domain
Wyosine_form	PF08608.12	gi|410670875|ref|YP_006923246.1|	-	1.5e-21	76.5	0.0	2.7e-21	75.7	0.0	1.5	1	0	0	1	1	1	1	Wyosine	base	formation
Radical_SAM	PF04055.21	gi|410670875|ref|YP_006923246.1|	-	1.5e-18	67.7	0.6	7.7e-18	65.4	0.6	2.0	1	1	0	1	1	1	1	Radical	SAM	superfamily
HAD_2	PF13419.6	gi|410670875|ref|YP_006923246.1|	-	0.0057	16.8	0.0	0.029	14.4	0.0	1.9	1	1	1	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|410670875|ref|YP_006923246.1|	-	0.082	13.2	0.0	0.1	12.8	0.0	1.3	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
TPR_1	PF00515.28	gi|410670876|ref|YP_006923247.1|	-	2.1e-33	112.8	14.7	9.2e-08	31.6	0.7	6.3	5	1	1	6	6	6	6	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|410670876|ref|YP_006923247.1|	-	2.5e-31	105.2	11.0	4.4e-07	29.5	0.9	6.2	4	1	2	6	6	6	6	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|410670876|ref|YP_006923247.1|	-	8.5e-22	75.5	13.3	0.00017	21.5	0.3	6.2	4	1	2	6	6	6	5	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|410670876|ref|YP_006923247.1|	-	2.6e-19	68.6	13.3	0.00017	21.2	0.0	7.4	5	2	3	8	8	7	7	TPR	repeat
TPR_12	PF13424.6	gi|410670876|ref|YP_006923247.1|	-	2.3e-18	66.2	8.0	0.0021	18.3	0.1	6.0	2	1	2	5	5	5	5	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|410670876|ref|YP_006923247.1|	-	1.9e-15	56.2	2.2	0.00065	20.3	0.2	6.0	2	1	4	6	6	6	3	Tetratricopeptide	repeat
ANAPC3	PF12895.7	gi|410670876|ref|YP_006923247.1|	-	2.7e-15	56.4	6.2	2.2e-07	31.0	0.8	3.6	3	1	1	4	4	4	3	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_17	PF13431.6	gi|410670876|ref|YP_006923247.1|	-	1.6e-14	53.1	5.0	0.0068	16.7	0.1	6.0	6	0	0	6	6	6	4	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|410670876|ref|YP_006923247.1|	-	5.9e-14	52.4	0.0	0.0012	19.4	0.0	4.4	4	0	0	4	4	4	2	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|410670876|ref|YP_006923247.1|	-	2.3e-12	46.0	3.4	0.037	14.1	0.0	6.1	6	0	0	6	6	6	3	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|410670876|ref|YP_006923247.1|	-	2.6e-11	43.8	2.7	0.0063	17.0	0.0	4.2	3	1	1	4	4	4	3	Tetratricopeptide	repeat
TPR_10	PF13374.6	gi|410670876|ref|YP_006923247.1|	-	4.6e-10	39.0	2.1	0.061	13.2	0.0	5.5	6	0	0	6	6	6	2	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|410670876|ref|YP_006923247.1|	-	4.7e-10	39.5	0.0	0.0029	17.7	0.0	4.0	4	0	0	4	4	4	2	Tetratricopeptide	repeat
SRP_TPR_like	PF17004.5	gi|410670876|ref|YP_006923247.1|	-	1.1e-07	31.8	6.1	0.00019	21.4	3.6	2.7	1	1	1	2	2	2	2	Putative	TPR-like	repeat
TPR_21	PF09976.9	gi|410670876|ref|YP_006923247.1|	-	4.5e-06	26.5	1.4	0.63	9.7	0.0	4.1	2	1	1	4	4	4	2	Tetratricopeptide	repeat-like	domain
DUF3856	PF12968.7	gi|410670876|ref|YP_006923247.1|	-	5.2e-06	26.6	2.2	0.017	15.2	0.3	3.6	2	1	1	3	3	3	1	Domain	of	Unknown	Function	(DUF3856)
Fis1_TPR_C	PF14853.6	gi|410670876|ref|YP_006923247.1|	-	1.3e-05	25.1	9.7	0.00018	21.5	0.1	4.7	6	0	0	6	6	5	1	Fis1	C-terminal	tetratricopeptide	repeat
TPR_15	PF13429.6	gi|410670876|ref|YP_006923247.1|	-	6.4e-05	22.3	0.7	0.0011	18.3	0.1	2.3	2	1	0	2	2	2	1	Tetratricopeptide	repeat
NARP1	PF12569.8	gi|410670876|ref|YP_006923247.1|	-	9.6e-05	21.5	1.0	0.026	13.4	0.0	3.5	2	1	1	3	3	3	2	NMDA	receptor-regulated	protein	1
BTAD	PF03704.17	gi|410670876|ref|YP_006923247.1|	-	0.00013	22.4	1.2	1.1	9.7	0.1	3.4	1	1	2	3	3	3	1	Bacterial	transcriptional	activator	domain
TPR_6	PF13174.6	gi|410670876|ref|YP_006923247.1|	-	0.00057	20.4	7.3	5.5	7.9	0.1	6.0	5	1	0	6	6	6	0	Tetratricopeptide	repeat
PPR	PF01535.20	gi|410670876|ref|YP_006923247.1|	-	0.0015	18.7	5.6	4.2	7.8	0.0	5.4	5	2	2	7	7	6	1	PPR	repeat
RPN7	PF10602.9	gi|410670876|ref|YP_006923247.1|	-	0.0027	17.4	2.3	5.8	6.6	0.0	4.4	2	1	2	5	5	5	0	26S	proteasome	subunit	RPN7
MIT	PF04212.18	gi|410670876|ref|YP_006923247.1|	-	0.023	14.8	12.6	2.7	8.1	0.3	5.7	4	2	2	6	6	6	0	MIT	(microtubule	interacting	and	transport)	domain
HrpB1_HrpK	PF09613.10	gi|410670876|ref|YP_006923247.1|	-	0.041	13.5	0.0	8.3	6.1	0.0	2.3	2	0	0	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB1_HrpK)
TPR_5	PF12688.7	gi|410670876|ref|YP_006923247.1|	-	0.055	13.7	0.2	0.58	10.4	0.1	2.7	3	1	0	3	3	2	0	Tetratrico	peptide	repeat
Coatomer_E	PF04733.14	gi|410670876|ref|YP_006923247.1|	-	0.076	12.4	1.7	5.4	6.3	0.2	2.9	3	1	1	4	4	4	0	Coatomer	epsilon	subunit
ChAPs	PF09295.10	gi|410670876|ref|YP_006923247.1|	-	0.089	11.8	0.0	0.18	10.8	0.0	1.4	1	1	0	1	1	1	0	ChAPs	(Chs5p-Arf1p-binding	proteins)
TPR_MalT	PF17874.1	gi|410670876|ref|YP_006923247.1|	-	0.1	11.9	0.0	0.48	9.7	0.0	2.2	1	1	1	2	2	2	0	MalT-like	TPR	region
DUF5113	PF17140.4	gi|410670876|ref|YP_006923247.1|	-	0.18	11.6	0.9	7	6.4	0.0	3.3	1	1	2	4	4	4	0	Domain	of	unknown	function	(DUF5113)
TPR_20	PF14561.6	gi|410670876|ref|YP_006923247.1|	-	0.2	12.0	0.8	9	6.7	0.0	3.4	2	1	2	4	4	4	0	Tetratricopeptide	repeat
PPR_2	PF13041.6	gi|410670876|ref|YP_006923247.1|	-	0.53	10.5	2.7	85	3.5	0.0	4.1	4	1	1	5	5	5	0	PPR	repeat	family
TPR_3	PF07720.12	gi|410670876|ref|YP_006923247.1|	-	2.1	8.4	7.9	14	5.8	0.1	4.8	6	0	0	6	6	6	0	Tetratricopeptide	repeat
URO-D	PF01208.17	gi|410670877|ref|YP_006923248.1|	-	3.2e-79	266.6	0.9	3.6e-79	266.4	0.9	1.0	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
MtmB	PF05369.12	gi|410670878|ref|YP_006923249.1|	-	8.5e-151	502.8	0.0	1e-150	502.5	0.0	1.0	1	0	0	1	1	1	1	Monomethylamine	methyltransferase	MtmB
MtmB	PF05369.12	gi|410670879|ref|YP_006923250.1|	-	6.4e-128	427.4	4.7	7.1e-128	427.2	4.7	1.0	1	0	0	1	1	1	1	Monomethylamine	methyltransferase	MtmB
MtmB	PF05369.12	gi|410670880|ref|YP_006923251.1|	-	4e-63	213.8	0.1	4.4e-63	213.7	0.1	1.0	1	0	0	1	1	1	1	Monomethylamine	methyltransferase	MtmB
MtmB	PF05369.12	gi|410670881|ref|YP_006923252.1|	-	7e-88	295.4	0.2	7.8e-88	295.2	0.2	1.0	1	0	0	1	1	1	1	Monomethylamine	methyltransferase	MtmB
B12-binding_2	PF02607.17	gi|410670882|ref|YP_006923253.1|	-	1.5e-18	67.0	0.9	3e-18	66.0	0.9	1.5	1	0	0	1	1	1	1	B12	binding	domain
B12-binding	PF02310.19	gi|410670882|ref|YP_006923253.1|	-	1.1e-15	57.7	0.2	2.5e-15	56.6	0.2	1.5	1	0	0	1	1	1	1	B12	binding	domain
Blt1	PF12754.7	gi|410670882|ref|YP_006923253.1|	-	0.0086	16.4	0.1	0.015	15.6	0.1	1.4	1	0	0	1	1	1	1	Blt1	N-terminal	domain
Dimeth_Pyl	PF09505.10	gi|410670883|ref|YP_006923254.1|	-	4.5e-55	187.0	2.1	4.9e-55	186.9	2.1	1.0	1	0	0	1	1	1	1	Dimethylamine	methyltransferase	(Dimeth_PyL)
Antimicrobial_7	PF08102.11	gi|410670883|ref|YP_006923254.1|	-	0.0057	16.9	0.0	0.014	15.6	0.0	1.7	1	0	0	1	1	1	1	Scorpion	antimicrobial	peptide
Dimeth_Pyl	PF09505.10	gi|410670884|ref|YP_006923255.1|	-	1.4e-193	643.6	5.7	1.6e-193	643.4	5.7	1.0	1	0	0	1	1	1	1	Dimethylamine	methyltransferase	(Dimeth_PyL)
B12-binding	PF02310.19	gi|410670885|ref|YP_006923256.1|	-	6.7e-26	90.7	0.2	1.3e-25	89.8	0.2	1.5	1	0	0	1	1	1	1	B12	binding	domain
B12-binding_2	PF02607.17	gi|410670885|ref|YP_006923256.1|	-	2.5e-18	66.3	1.6	4.2e-18	65.5	0.6	1.9	2	0	0	2	2	2	1	B12	binding	domain
SpoVAD	PF07451.11	gi|410670885|ref|YP_006923256.1|	-	0.029	13.1	0.1	0.036	12.8	0.1	1.2	1	0	0	1	1	1	0	Stage	V	sporulation	protein	AD	(SpoVAD)
EamA	PF00892.20	gi|410670888|ref|YP_006923259.1|	-	6.2e-11	42.6	46.1	5.1e-06	26.7	13.0	3.3	3	1	0	3	3	3	3	EamA-like	transporter	family
B12-binding	PF02310.19	gi|410670890|ref|YP_006923261.1|	-	5.6e-21	74.8	0.3	1e-20	74.0	0.3	1.4	1	0	0	1	1	1	1	B12	binding	domain
B12-binding_2	PF02607.17	gi|410670890|ref|YP_006923261.1|	-	5.5e-20	71.6	1.1	5.5e-20	71.6	1.1	2.1	3	0	0	3	3	3	1	B12	binding	domain
SpoVAD	PF07451.11	gi|410670890|ref|YP_006923261.1|	-	0.0066	15.2	0.1	0.0088	14.8	0.1	1.2	1	0	0	1	1	1	1	Stage	V	sporulation	protein	AD	(SpoVAD)
Sigma54_activ_2	PF14532.6	gi|410670890|ref|YP_006923261.1|	-	0.014	15.5	0.1	0.45	10.6	0.1	2.4	1	1	0	2	2	2	0	Sigma-54	interaction	domain
PurL_C	PF16904.5	gi|410670890|ref|YP_006923261.1|	-	0.14	12.4	0.0	0.24	11.7	0.0	1.3	1	0	0	1	1	1	0	Phosphoribosylformylglycinamidine	synthase	II	C-terminus
MTTB	PF06253.11	gi|410670891|ref|YP_006923262.1|	-	4.5e-28	97.5	0.0	5.2e-28	97.3	0.0	1.0	1	0	0	1	1	1	1	Trimethylamine	methyltransferase	(MTTB)
Antimicrobial15	PF08110.12	gi|410670891|ref|YP_006923262.1|	-	0.11	12.8	1.9	32	5.0	0.0	3.5	3	0	0	3	3	3	0	Ocellatin	family
MTTB	PF06253.11	gi|410670892|ref|YP_006923263.1|	-	1.4e-53	181.7	0.0	1.6e-53	181.5	0.0	1.0	1	0	0	1	1	1	1	Trimethylamine	methyltransferase	(MTTB)
Hydant_A_N	PF05378.13	gi|410670894|ref|YP_006923265.1|	-	9.6e-28	97.1	2.3	4.2e-25	88.5	0.4	3.2	2	1	0	2	2	2	1	Hydantoinase/oxoprolinase	N-terminal	region
Hydantoinase_A	PF01968.18	gi|410670894|ref|YP_006923265.1|	-	5.6e-23	81.6	0.3	1.1e-21	77.3	0.0	2.1	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase
BcrAD_BadFG	PF01869.20	gi|410670894|ref|YP_006923265.1|	-	0.0015	18.1	0.0	0.0036	16.8	0.0	2.0	1	1	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
ROK	PF00480.20	gi|410670894|ref|YP_006923265.1|	-	0.079	12.4	0.0	0.15	11.5	0.0	1.5	1	1	0	1	1	1	0	ROK	family
DDE_Tnp_1	PF01609.21	gi|410670895|ref|YP_006923266.1|	-	4.3e-09	36.3	5.9	1.2e-08	34.9	5.9	1.7	1	1	0	1	1	1	1	Transposase	DDE	domain
Methyltransf_31	PF13847.6	gi|410670895|ref|YP_006923266.1|	-	0.078	12.8	0.2	1.5	8.6	0.0	2.5	1	1	0	2	2	2	0	Methyltransferase	domain
Hydantoinase_A	PF01968.18	gi|410670896|ref|YP_006923267.1|	-	0.11	11.8	0.1	0.72	9.1	0.1	2.0	1	1	0	1	1	1	0	Hydantoinase/oxoprolinase
PAS_3	PF08447.12	gi|410670897|ref|YP_006923268.1|	-	1.2e-39	134.4	0.6	1.8e-17	63.4	0.1	4.1	5	0	0	5	5	5	2	PAS	fold
GAF_2	PF13185.6	gi|410670897|ref|YP_006923268.1|	-	4.8e-28	98.2	0.0	1.2e-14	54.8	0.0	2.8	3	0	0	3	3	3	2	GAF	domain
PAS	PF00989.25	gi|410670897|ref|YP_006923268.1|	-	9.6e-24	83.6	0.0	8.1e-07	29.0	0.0	4.5	4	0	0	4	4	4	4	PAS	fold
PAS_4	PF08448.10	gi|410670897|ref|YP_006923268.1|	-	2.2e-18	66.5	0.0	7.2e-06	26.2	0.0	4.3	4	0	0	4	4	4	3	PAS	fold
PAS_9	PF13426.7	gi|410670897|ref|YP_006923268.1|	-	2.7e-16	59.7	0.5	0.00019	21.6	0.0	4.9	5	0	0	5	5	5	3	PAS	domain
PAS_8	PF13188.7	gi|410670897|ref|YP_006923268.1|	-	2.6e-10	40.1	0.1	4.2e-05	23.5	0.0	4.1	3	0	0	3	3	3	2	PAS	domain
GAF_3	PF13492.6	gi|410670897|ref|YP_006923268.1|	-	7.7e-06	26.3	0.0	0.00038	20.8	0.0	2.5	2	0	0	2	2	2	1	GAF	domain
GAF	PF01590.26	gi|410670897|ref|YP_006923268.1|	-	0.0079	16.8	0.0	6.6	7.4	0.0	2.7	2	0	0	2	2	2	2	GAF	domain
dCache_1	PF02743.18	gi|410670897|ref|YP_006923268.1|	-	0.029	14.1	0.2	1.2	8.9	0.0	3.1	3	0	0	3	3	3	0	Cache	domain
DNA_processg_A	PF02481.15	gi|410670897|ref|YP_006923268.1|	-	0.22	10.7	0.0	0.37	10.0	0.0	1.2	1	0	0	1	1	1	0	DNA	recombination-mediator	protein	A
Hydant_A_N	PF05378.13	gi|410670898|ref|YP_006923269.1|	-	1e-30	106.8	6.3	1.3e-27	96.7	1.3	3.7	2	1	0	2	2	2	2	Hydantoinase/oxoprolinase	N-terminal	region
Hydantoinase_A	PF01968.18	gi|410670898|ref|YP_006923269.1|	-	1.5e-30	106.5	2.4	2.9e-29	102.3	0.5	2.9	2	1	0	2	2	2	1	Hydantoinase/oxoprolinase
MutL	PF13941.6	gi|410670898|ref|YP_006923269.1|	-	7.1e-08	31.5	1.0	0.00016	20.4	0.1	2.2	2	0	0	2	2	2	2	MutL	protein
BcrAD_BadFG	PF01869.20	gi|410670898|ref|YP_006923269.1|	-	0.013	15.0	0.7	0.6	9.5	0.0	3.0	3	0	0	3	3	3	0	BadF/BadG/BcrA/BcrD	ATPase	family
ROK	PF00480.20	gi|410670898|ref|YP_006923269.1|	-	0.031	13.8	0.0	0.056	12.9	0.0	1.4	1	0	0	1	1	1	0	ROK	family
DprA_WH	PF17782.1	gi|410670898|ref|YP_006923269.1|	-	0.17	12.0	0.0	7.9	6.7	0.0	2.6	1	1	1	2	2	2	0	DprA	winged	helix	domain
FtsA	PF14450.6	gi|410670898|ref|YP_006923269.1|	-	0.32	11.4	1.2	14	6.2	0.2	2.7	2	0	0	2	2	2	0	Cell	division	protein	FtsA
HisKA_2	PF07568.12	gi|410670900|ref|YP_006923271.1|	-	1.1e-32	111.9	2.6	2.9e-32	110.6	2.6	1.8	1	0	0	1	1	1	1	Histidine	kinase
dCache_1	PF02743.18	gi|410670900|ref|YP_006923271.1|	-	1.1e-25	90.9	1.2	1.1e-25	90.9	1.2	1.9	2	0	0	2	2	2	1	Cache	domain
HAMP	PF00672.25	gi|410670900|ref|YP_006923271.1|	-	1.8e-08	34.6	0.4	2.6e-05	24.5	0.2	3.4	3	0	0	3	3	3	1	HAMP	domain
HATPase_c	PF02518.26	gi|410670900|ref|YP_006923271.1|	-	4.1e-07	30.5	0.1	1e-06	29.2	0.1	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|410670900|ref|YP_006923271.1|	-	2.3e-05	24.3	0.0	4.2e-05	23.5	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
Cache_3-Cache_2	PF17201.4	gi|410670900|ref|YP_006923271.1|	-	2.4e-05	23.8	2.0	0.00027	20.3	0.0	2.6	2	1	1	3	3	3	1	Cache	3/Cache	2	fusion	domain
HWE_HK	PF07536.14	gi|410670900|ref|YP_006923271.1|	-	5.2e-05	23.9	0.1	0.00013	22.6	0.1	1.7	1	0	0	1	1	1	1	HWE	histidine	kinase
sCache_2	PF17200.4	gi|410670900|ref|YP_006923271.1|	-	0.0086	15.9	0.0	0.0086	15.9	0.0	2.3	3	0	0	3	3	3	1	Single	Cache	domain	2
SPOB_a	PF14689.6	gi|410670900|ref|YP_006923271.1|	-	0.043	13.5	1.2	0.21	11.3	0.9	2.4	1	1	1	2	2	2	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
DnaB	PF00772.21	gi|410670900|ref|YP_006923271.1|	-	0.12	12.5	2.0	3.3	7.8	0.1	3.2	2	1	1	3	3	3	0	DnaB-like	helicase	N	terminal	domain
RMI1_C	PF16099.5	gi|410670900|ref|YP_006923271.1|	-	0.21	11.4	1.7	0.29	10.9	0.2	2.0	2	0	0	2	2	2	0	Recq-mediated	genome	instability	protein	1,	C-terminal	OB-fold
V-SNARE_C	PF12352.8	gi|410670900|ref|YP_006923271.1|	-	0.28	11.5	2.4	0.91	9.8	1.1	2.5	2	0	0	2	2	2	0	Snare	region	anchored	in	the	vesicle	membrane	C-terminus
Response_reg	PF00072.24	gi|410670901|ref|YP_006923272.1|	-	2.9e-22	78.9	0.4	3.4e-22	78.7	0.4	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF1724	PF08350.10	gi|410670902|ref|YP_006923273.1|	-	9.9e-20	70.4	0.6	2.7e-19	69.0	0.5	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1724)
HTH_5	PF01022.20	gi|410670902|ref|YP_006923273.1|	-	0.0005	19.9	0.5	0.00077	19.3	0.5	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.6	gi|410670902|ref|YP_006923273.1|	-	0.0034	17.3	0.0	0.0062	16.5	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
HemN_C	PF06969.16	gi|410670902|ref|YP_006923273.1|	-	0.0039	17.2	0.0	0.014	15.5	0.0	1.9	1	0	0	1	1	1	1	HemN	C-terminal	domain
HxlR	PF01638.17	gi|410670902|ref|YP_006923273.1|	-	0.0088	15.9	0.1	0.024	14.5	0.1	1.7	1	1	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_27	PF13463.6	gi|410670902|ref|YP_006923273.1|	-	0.017	15.6	0.0	0.032	14.7	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|410670902|ref|YP_006923273.1|	-	0.027	14.4	0.1	0.053	13.4	0.1	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|410670902|ref|YP_006923273.1|	-	0.086	12.8	0.1	0.14	12.1	0.1	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_20	PF12840.7	gi|410670902|ref|YP_006923273.1|	-	0.09	12.8	0.0	0.16	12.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
AA_permease_2	PF13520.6	gi|410670904|ref|YP_006923275.1|	-	6.4e-65	219.6	44.0	7.8e-65	219.4	44.0	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|410670904|ref|YP_006923275.1|	-	2.6e-13	49.4	35.4	3.9e-13	48.8	35.4	1.4	1	1	0	1	1	1	1	Amino	acid	permease
Dimeth_Pyl	PF09505.10	gi|410670905|ref|YP_006923276.1|	-	2.5e-59	201.1	2.5	2.7e-59	200.9	2.5	1.0	1	0	0	1	1	1	1	Dimethylamine	methyltransferase	(Dimeth_PyL)
Antimicrobial_7	PF08102.11	gi|410670905|ref|YP_006923276.1|	-	0.0064	16.7	0.0	0.015	15.5	0.0	1.6	1	0	0	1	1	1	1	Scorpion	antimicrobial	peptide
Dimeth_Pyl	PF09505.10	gi|410670906|ref|YP_006923277.1|	-	8.6e-196	650.9	4.7	9.7e-196	650.8	4.7	1.0	1	0	0	1	1	1	1	Dimethylamine	methyltransferase	(Dimeth_PyL)
B12-binding	PF02310.19	gi|410670907|ref|YP_006923278.1|	-	6.7e-26	90.7	0.2	1.3e-25	89.8	0.2	1.5	1	0	0	1	1	1	1	B12	binding	domain
B12-binding_2	PF02607.17	gi|410670907|ref|YP_006923278.1|	-	2.5e-18	66.3	1.6	4.2e-18	65.5	0.6	1.9	2	0	0	2	2	2	1	B12	binding	domain
SpoVAD	PF07451.11	gi|410670907|ref|YP_006923278.1|	-	0.029	13.1	0.1	0.036	12.8	0.1	1.2	1	0	0	1	1	1	0	Stage	V	sporulation	protein	AD	(SpoVAD)
B12-binding	PF02310.19	gi|410670908|ref|YP_006923279.1|	-	9.6e-22	77.3	0.6	1.3e-21	76.8	0.1	1.5	2	0	0	2	2	2	1	B12	binding	domain
B12-binding_2	PF02607.17	gi|410670908|ref|YP_006923279.1|	-	8.1e-15	55.0	0.6	1.8e-14	53.9	0.6	1.6	1	0	0	1	1	1	1	B12	binding	domain
URO-D	PF01208.17	gi|410670909|ref|YP_006923280.1|	-	3.1e-79	266.6	0.9	3.5e-79	266.5	0.9	1.0	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
URO-D	PF01208.17	gi|410670910|ref|YP_006923281.1|	-	3.7e-09	36.2	0.1	4.5e-09	35.9	0.1	1.0	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
Desulfoferrodox	PF01880.18	gi|410670911|ref|YP_006923282.1|	-	6.5e-27	94.0	1.3	5.1e-22	78.3	0.2	2.1	2	0	0	2	2	2	2	Desulfoferrodoxin
SoxY	PF13501.6	gi|410670911|ref|YP_006923282.1|	-	0.031	14.5	0.6	0.06	13.6	0.2	1.6	2	0	0	2	2	2	0	Sulfur	oxidation	protein	SoxY
DUF3955	PF13127.6	gi|410670912|ref|YP_006923283.1|	-	0.17	11.7	7.4	0.14	12.0	1.8	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3955)
PsbT	PF01405.17	gi|410670912|ref|YP_006923283.1|	-	5.5	6.9	8.8	7.1	6.5	0.6	2.4	2	0	0	2	2	2	0	Photosystem	II	reaction	centre	T	protein
AA_permease	PF00324.21	gi|410670914|ref|YP_006923285.1|	-	5.7e-42	143.9	39.7	8.3e-42	143.4	39.7	1.2	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease_2	PF13520.6	gi|410670914|ref|YP_006923285.1|	-	2.4e-21	76.1	46.1	4.5e-21	75.2	44.9	1.7	1	1	1	2	2	2	1	Amino	acid	permease
MtmB	PF05369.12	gi|410670915|ref|YP_006923286.1|	-	2.2e-127	425.6	3.5	2.5e-127	425.4	3.5	1.0	1	0	0	1	1	1	1	Monomethylamine	methyltransferase	MtmB
MtmB	PF05369.12	gi|410670916|ref|YP_006923287.1|	-	1.1e-20	73.9	0.1	1.2e-20	73.8	0.1	1.0	1	0	0	1	1	1	1	Monomethylamine	methyltransferase	MtmB
MtmB	PF05369.12	gi|410670917|ref|YP_006923288.1|	-	1.5e-42	146.0	0.2	1.9e-42	145.6	0.2	1.1	1	0	0	1	1	1	1	Monomethylamine	methyltransferase	MtmB
MtmB	PF05369.12	gi|410670918|ref|YP_006923289.1|	-	6.3e-87	292.2	1.7	4.2e-78	263.2	0.4	2.0	1	1	1	2	2	2	2	Monomethylamine	methyltransferase	MtmB
B12-binding_2	PF02607.17	gi|410670919|ref|YP_006923290.1|	-	5.1e-19	68.5	0.6	1.1e-18	67.4	0.6	1.6	1	0	0	1	1	1	1	B12	binding	domain
B12-binding	PF02310.19	gi|410670919|ref|YP_006923290.1|	-	7.3e-16	58.3	0.2	1.5e-15	57.3	0.2	1.5	1	0	0	1	1	1	1	B12	binding	domain
Blt1	PF12754.7	gi|410670919|ref|YP_006923290.1|	-	0.0024	18.2	0.1	0.0044	17.3	0.1	1.4	1	0	0	1	1	1	1	Blt1	N-terminal	domain
DUF1724	PF08350.10	gi|410670920|ref|YP_006923291.1|	-	3e-22	78.5	2.8	3.1e-22	78.5	1.5	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1724)
HTH_45	PF14947.6	gi|410670920|ref|YP_006923291.1|	-	0.0015	18.5	0.1	0.0027	17.6	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_11	PF08279.12	gi|410670920|ref|YP_006923291.1|	-	0.083	12.8	1.3	0.16	12.0	1.3	1.4	1	0	0	1	1	1	0	HTH	domain
DUF1724	PF08350.10	gi|410670921|ref|YP_006923292.1|	-	1.7e-22	79.3	0.2	3.8e-22	78.2	0.2	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
HTH_45	PF14947.6	gi|410670921|ref|YP_006923292.1|	-	0.053	13.5	0.1	0.15	12.1	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix
HxlR	PF01638.17	gi|410670921|ref|YP_006923292.1|	-	0.074	12.9	0.1	0.23	11.3	0.1	1.9	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
HisKA_2	PF07568.12	gi|410670922|ref|YP_006923293.1|	-	3.6e-30	103.9	2.8	3.6e-30	103.9	2.8	2.6	2	0	0	2	2	2	1	Histidine	kinase
dCache_1	PF02743.18	gi|410670922|ref|YP_006923293.1|	-	2.2e-25	89.9	2.5	2.2e-25	89.9	2.5	2.7	3	0	0	3	3	3	1	Cache	domain
PAS_3	PF08447.12	gi|410670922|ref|YP_006923293.1|	-	2.6e-17	62.9	0.8	4.1e-15	55.8	0.5	2.8	2	0	0	2	2	2	1	PAS	fold
PAS_9	PF13426.7	gi|410670922|ref|YP_006923293.1|	-	4.8e-10	39.6	0.3	2.6e-06	27.6	0.0	3.0	2	0	0	2	2	2	2	PAS	domain
HATPase_c	PF02518.26	gi|410670922|ref|YP_006923293.1|	-	1.4e-09	38.4	0.1	4.6e-09	36.8	0.1	1.9	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HAMP	PF00672.25	gi|410670922|ref|YP_006923293.1|	-	2e-07	31.3	0.5	8.3e-06	26.1	0.1	2.8	3	0	0	3	3	3	1	HAMP	domain
PAS	PF00989.25	gi|410670922|ref|YP_006923293.1|	-	3e-07	30.4	0.0	0.042	13.8	0.0	2.9	2	0	0	2	2	2	2	PAS	fold
HATPase_c_2	PF13581.6	gi|410670922|ref|YP_006923293.1|	-	3.7e-06	26.9	0.0	8.5e-06	25.7	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_8	PF13188.7	gi|410670922|ref|YP_006923293.1|	-	8.4e-06	25.7	0.0	2.8e-05	24.0	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
HWE_HK	PF07536.14	gi|410670922|ref|YP_006923293.1|	-	3.6e-05	24.4	0.2	0.00013	22.6	0.2	2.0	1	0	0	1	1	1	1	HWE	histidine	kinase
PAS_4	PF08448.10	gi|410670922|ref|YP_006923293.1|	-	0.00025	21.3	0.0	0.52	10.6	0.0	2.5	2	0	0	2	2	2	2	PAS	fold
Response_reg	PF00072.24	gi|410670923|ref|YP_006923294.1|	-	1.1e-23	83.5	0.0	1.3e-23	83.3	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
tRNA-synt_2d	PF01409.20	gi|410670925|ref|YP_006923296.1|	-	8.5e-11	41.8	0.0	4.4e-07	29.6	0.0	2.4	2	0	0	2	2	2	2	tRNA	synthetases	class	II	core	domain	(F)
tRNA_synthFbeta	PF17759.1	gi|410670925|ref|YP_006923296.1|	-	6.3e-07	29.0	0.0	1.1e-06	28.2	0.0	1.4	1	0	0	1	1	1	1	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
tRNA-synt_2	PF00152.20	gi|410670925|ref|YP_006923296.1|	-	1.3e-06	27.7	0.1	0.00016	20.9	0.1	3.1	2	1	0	2	2	2	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA-synt_2b	PF00587.25	gi|410670925|ref|YP_006923296.1|	-	0.00031	20.8	0.0	0.003	17.5	0.0	2.4	1	1	1	2	2	2	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
tRNA-synt_His	PF13393.6	gi|410670925|ref|YP_006923296.1|	-	0.0013	18.1	0.0	0.0025	17.1	0.0	1.4	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
DUF3306	PF11748.8	gi|410670925|ref|YP_006923296.1|	-	1.2	10.1	5.5	1.6	9.7	4.9	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3306)
Radical_SAM	PF04055.21	gi|410670926|ref|YP_006923297.1|	-	5.3e-11	43.2	0.5	4.1e-10	40.3	0.2	2.4	3	0	0	3	3	3	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|410670926|ref|YP_006923297.1|	-	3.9e-05	23.7	0.0	7.3e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|410670926|ref|YP_006923297.1|	-	0.00088	19.5	0.0	0.0019	18.4	0.0	1.6	1	1	1	2	2	2	1	4Fe-4S	single	cluster	domain
BATS	PF06968.13	gi|410670926|ref|YP_006923297.1|	-	0.004	17.2	0.0	0.02	15.0	0.0	2.1	1	1	0	1	1	1	1	Biotin	and	Thiamin	Synthesis	associated	domain
His_biosynth	PF00977.21	gi|410670926|ref|YP_006923297.1|	-	0.0098	15.4	0.0	0.018	14.5	0.0	1.4	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Nif11	PF07862.11	gi|410670926|ref|YP_006923297.1|	-	0.063	13.6	0.7	19	5.7	0.0	2.7	2	0	0	2	2	2	0	Nif11	domain
ATP-grasp_3	PF02655.14	gi|410670927|ref|YP_006923298.1|	-	4e-07	30.2	0.0	7.5e-07	29.3	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.6	gi|410670927|ref|YP_006923298.1|	-	1.4e-06	28.1	0.0	2.6e-06	27.2	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
Ins134_P3_kin	PF05770.11	gi|410670927|ref|YP_006923298.1|	-	0.0036	16.8	0.0	0.028	14.0	0.0	2.2	3	0	0	3	3	3	1	Inositol	1,3,4-trisphosphate	5/6-kinase	ATP-grasp	domain
ATPgrasp_N	PF18130.1	gi|410670927|ref|YP_006923298.1|	-	0.0066	17.0	0.0	0.015	15.8	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	N-terminal	domain
Dala_Dala_lig_C	PF07478.13	gi|410670927|ref|YP_006923298.1|	-	0.017	14.7	0.0	0.029	13.9	0.0	1.5	1	0	0	1	1	1	0	D-ala	D-ala	ligase	C-terminus
FAD_oxidored	PF12831.7	gi|410670927|ref|YP_006923298.1|	-	0.019	14.3	0.0	0.22	10.8	0.0	2.1	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
GARS_A	PF01071.19	gi|410670927|ref|YP_006923298.1|	-	0.074	12.8	0.1	2.6	7.8	0.1	2.8	3	0	0	3	3	3	0	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GIDA	PF01134.22	gi|410670927|ref|YP_006923298.1|	-	0.084	11.9	0.0	0.12	11.5	0.0	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
IF3_N	PF05198.16	gi|410670927|ref|YP_006923298.1|	-	0.16	12.2	0.0	0.45	10.8	0.0	1.7	1	0	0	1	1	1	0	Translation	initiation	factor	IF-3,	N-terminal	domain
NAD_binding_7	PF13241.6	gi|410670928|ref|YP_006923299.1|	-	6.5e-05	23.3	0.0	0.00022	21.6	0.0	1.8	2	0	0	2	2	2	1	Putative	NAD(P)-binding
2-Hacid_dh_C	PF02826.19	gi|410670928|ref|YP_006923299.1|	-	0.00042	19.7	0.0	0.00061	19.2	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|410670928|ref|YP_006923299.1|	-	0.0013	18.9	0.0	0.0027	17.9	0.0	1.6	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
3HCDH_N	PF02737.18	gi|410670928|ref|YP_006923299.1|	-	0.0016	18.3	0.0	0.0026	17.7	0.0	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|410670928|ref|YP_006923299.1|	-	0.008	15.8	0.0	0.016	14.9	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
TrkA_N	PF02254.18	gi|410670928|ref|YP_006923299.1|	-	0.011	16.0	0.0	0.022	15.0	0.0	1.5	1	0	0	1	1	1	0	TrkA-N	domain
adh_short	PF00106.25	gi|410670928|ref|YP_006923299.1|	-	0.012	15.1	0.0	0.043	13.3	0.0	1.9	2	0	0	2	2	2	0	short	chain	dehydrogenase
F420_oxidored	PF03807.17	gi|410670928|ref|YP_006923299.1|	-	0.026	15.1	0.0	0.073	13.7	0.0	1.8	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_N	PF03721.14	gi|410670928|ref|YP_006923299.1|	-	0.056	13.0	0.0	0.088	12.4	0.0	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|410670928|ref|YP_006923299.1|	-	0.075	12.3	0.0	0.15	11.3	0.0	1.5	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
IlvN	PF07991.12	gi|410670928|ref|YP_006923299.1|	-	0.085	12.4	0.0	0.21	11.2	0.0	1.6	2	0	0	2	2	2	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Shikimate_DH	PF01488.20	gi|410670928|ref|YP_006923299.1|	-	0.099	12.7	0.0	0.17	11.9	0.0	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
RACo_C_ter	PF14574.6	gi|410670929|ref|YP_006923300.1|	-	1.9e-73	246.7	4.2	7.6e-73	244.8	4.2	1.9	1	1	0	1	1	1	1	C-terminal	domain	of	RACo	the	ASKHA	domain
Raco_middle	PF17651.1	gi|410670929|ref|YP_006923300.1|	-	7.1e-11	42.1	0.0	5.1e-10	39.3	0.0	2.2	2	0	0	2	2	2	1	RACo	middle	region
Fer4_6	PF12837.7	gi|410670929|ref|YP_006923300.1|	-	3.4e-09	36.4	12.0	1.2e-06	28.3	1.9	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|410670929|ref|YP_006923300.1|	-	4.1e-08	32.7	8.9	7e-05	22.5	1.9	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|410670929|ref|YP_006923300.1|	-	4.8e-07	30.3	9.0	1.1e-06	29.2	9.0	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410670929|ref|YP_006923300.1|	-	7.5e-07	29.2	9.5	1.4e-06	28.3	9.5	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410670929|ref|YP_006923300.1|	-	3.3e-05	23.9	9.9	6.6e-05	23.0	9.9	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|410670929|ref|YP_006923300.1|	-	0.00029	21.2	4.5	0.016	15.7	0.1	2.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410670929|ref|YP_006923300.1|	-	0.00034	21.5	10.7	0.069	14.1	2.2	2.6	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.6	gi|410670929|ref|YP_006923300.1|	-	0.0005	20.5	4.9	0.0079	16.7	0.2	2.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410670929|ref|YP_006923300.1|	-	0.00094	19.1	11.5	0.033	14.3	2.2	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|410670929|ref|YP_006923300.1|	-	0.0015	18.6	12.5	0.038	14.1	13.6	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
MHC_II_alpha	PF00993.20	gi|410670929|ref|YP_006923300.1|	-	0.022	14.4	0.0	0.099	12.3	0.0	2.0	2	0	0	2	2	2	0	Class	II	histocompatibility	antigen,	alpha	domain
Fer4_4	PF12800.7	gi|410670929|ref|YP_006923300.1|	-	0.037	14.5	14.0	0.93	10.2	3.7	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
IL33	PF15095.6	gi|410670929|ref|YP_006923300.1|	-	0.13	11.7	0.0	0.23	10.9	0.0	1.3	1	0	0	1	1	1	0	Interleukin	33
Fer4_3	PF12798.7	gi|410670929|ref|YP_006923300.1|	-	0.34	12.0	15.2	2.3	9.4	4.0	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DNA_pol_E_B	PF04042.16	gi|410670930|ref|YP_006923301.1|	-	3.4e-15	56.0	0.0	5.5e-15	55.3	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	alpha/epsilon	subunit	B
Metallophos	PF00149.28	gi|410670930|ref|YP_006923301.1|	-	5.3e-11	43.4	0.1	1e-10	42.5	0.1	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|410670930|ref|YP_006923301.1|	-	7.7e-09	35.9	0.0	2e-08	34.6	0.0	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
tRNA_anti-codon	PF01336.25	gi|410670930|ref|YP_006923301.1|	-	0.00065	19.6	0.1	0.0018	18.2	0.0	1.8	2	0	0	2	2	2	1	OB-fold	nucleic	acid	binding	domain
Peptidase_S24	PF00717.23	gi|410670931|ref|YP_006923302.1|	-	0.003	17.5	0.1	0.0051	16.7	0.1	1.5	1	0	0	1	1	1	1	Peptidase	S24-like
Cdc6_C	PF09079.11	gi|410670932|ref|YP_006923303.1|	-	1e-22	79.9	0.4	2.8e-22	78.5	0.4	1.8	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|410670932|ref|YP_006923303.1|	-	5.2e-11	43.0	0.0	1.1e-10	41.9	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|410670932|ref|YP_006923303.1|	-	1.7e-10	41.6	0.1	3.5e-09	37.3	0.1	2.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|410670932|ref|YP_006923303.1|	-	1.9e-08	34.8	0.1	3.8e-08	33.8	0.1	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|410670932|ref|YP_006923303.1|	-	1.4e-06	28.4	1.0	5.7e-06	26.4	1.0	2.0	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
TniB	PF05621.11	gi|410670932|ref|YP_006923303.1|	-	1.1e-05	24.9	0.1	3.9e-05	23.1	0.0	1.8	2	0	0	2	2	2	1	Bacterial	TniB	protein
DUF815	PF05673.13	gi|410670932|ref|YP_006923303.1|	-	0.0011	18.1	0.5	0.0042	16.3	0.0	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
AAA_25	PF13481.6	gi|410670932|ref|YP_006923303.1|	-	0.0012	18.4	0.2	0.0039	16.8	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
Sigma54_activat	PF00158.26	gi|410670932|ref|YP_006923303.1|	-	0.0015	18.2	0.0	0.003	17.3	0.0	1.6	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Bac_DnaA	PF00308.18	gi|410670932|ref|YP_006923303.1|	-	0.0018	18.2	0.5	0.024	14.5	0.5	2.1	1	1	0	1	1	1	1	Bacterial	dnaA	protein
NACHT	PF05729.12	gi|410670932|ref|YP_006923303.1|	-	0.003	17.5	0.0	0.0053	16.7	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
DEAD	PF00270.29	gi|410670932|ref|YP_006923303.1|	-	0.0031	17.3	2.0	1.2	8.8	0.1	2.9	3	0	0	3	3	3	2	DEAD/DEAH	box	helicase
KAP_NTPase	PF07693.14	gi|410670932|ref|YP_006923303.1|	-	0.0032	16.8	2.0	0.53	9.5	0.7	2.3	1	1	1	2	2	2	2	KAP	family	P-loop	domain
DUF2075	PF09848.9	gi|410670932|ref|YP_006923303.1|	-	0.0053	16.0	0.0	0.0078	15.5	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_18	PF13238.6	gi|410670932|ref|YP_006923303.1|	-	0.013	16.1	0.7	0.038	14.5	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
AAA_assoc_2	PF16193.5	gi|410670932|ref|YP_006923303.1|	-	0.015	15.6	0.2	0.035	14.4	0.2	1.6	1	0	0	1	1	1	0	AAA	C-terminal	domain
RuvB_N	PF05496.12	gi|410670932|ref|YP_006923303.1|	-	0.031	14.0	0.1	1.6	8.5	0.0	2.4	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
IstB_IS21	PF01695.17	gi|410670932|ref|YP_006923303.1|	-	0.046	13.4	0.2	0.31	10.7	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
TsaE	PF02367.17	gi|410670932|ref|YP_006923303.1|	-	0.06	13.3	0.1	0.22	11.5	0.0	1.9	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_24	PF13479.6	gi|410670932|ref|YP_006923303.1|	-	0.075	12.8	0.3	0.15	11.8	0.3	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|410670932|ref|YP_006923303.1|	-	0.081	12.4	0.0	0.14	11.6	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
ResIII	PF04851.15	gi|410670932|ref|YP_006923303.1|	-	0.084	12.9	0.0	0.19	11.7	0.0	1.7	1	1	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
AAA_2	PF07724.14	gi|410670932|ref|YP_006923303.1|	-	0.097	12.8	1.8	1	9.5	1.8	2.3	1	1	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
CbiA	PF01656.23	gi|410670932|ref|YP_006923303.1|	-	0.16	12.1	0.1	0.4	10.7	0.1	1.9	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Pyridoxal_deC	PF00282.19	gi|410670934|ref|YP_006923305.1|	-	1.2e-29	103.2	0.0	1.6e-29	102.8	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase	conserved	domain
Aminotran_5	PF00266.19	gi|410670934|ref|YP_006923305.1|	-	6e-06	25.5	0.0	2.1e-05	23.7	0.0	1.7	2	0	0	2	2	2	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|410670934|ref|YP_006923305.1|	-	0.084	12.1	0.0	0.15	11.3	0.0	1.4	1	0	0	1	1	1	0	Beta-eliminating	lyase
CBS	PF00571.28	gi|410670935|ref|YP_006923306.1|	-	2e-28	98.6	3.3	3.3e-15	56.3	0.3	2.4	2	0	0	2	2	2	2	CBS	domain
Peptidase_M50	PF02163.22	gi|410670935|ref|YP_006923306.1|	-	4.5e-13	49.1	12.1	4.7e-08	32.6	0.5	3.5	1	1	2	3	3	3	2	Peptidase	family	M50
Peptidase_M50B	PF13398.6	gi|410670935|ref|YP_006923306.1|	-	0.016	14.9	7.2	0.012	15.3	5.8	1.6	1	1	0	1	1	1	0	Peptidase	M50B-like
DUF2202	PF09968.9	gi|410670935|ref|YP_006923306.1|	-	0.072	12.9	0.0	0.11	12.3	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	domain	(DUF2202)
TraB	PF01963.17	gi|410670936|ref|YP_006923307.1|	-	4.9e-33	115.2	0.0	8.4e-33	114.4	0.0	1.3	1	0	0	1	1	1	1	TraB	family
YiiD_C	PF09500.10	gi|410670936|ref|YP_006923307.1|	-	0.12	12.2	0.0	0.2	11.4	0.0	1.3	1	0	0	1	1	1	0	Putative	thioesterase	(yiiD_Cterm)
EMP70	PF02990.16	gi|410670936|ref|YP_006923307.1|	-	0.13	10.9	3.5	0.34	9.5	3.5	1.7	1	1	0	1	1	1	0	Endomembrane	protein	70
Transglut_core	PF01841.19	gi|410670937|ref|YP_006923308.1|	-	2.9e-14	53.5	0.0	4.1e-14	53.0	0.0	1.2	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
FTR_C	PF02741.15	gi|410670938|ref|YP_006923309.1|	-	9.1e-65	217.2	0.8	9.1e-65	217.2	0.8	1.4	2	0	0	2	2	2	1	FTR,	proximal	lobe
FTR	PF01913.18	gi|410670938|ref|YP_006923309.1|	-	2.2e-64	215.7	0.1	4.6e-64	214.7	0.1	1.5	1	0	0	1	1	1	1	Formylmethanofuran-tetrahydromethanopterin	formyltransferase
zf-CSL	PF05207.13	gi|410670940|ref|YP_006923311.1|	-	4.2e-05	23.2	0.0	6.2e-05	22.6	0.0	1.2	1	0	0	1	1	1	1	CSL	zinc	finger
Zn-ribbon_8	PF09723.10	gi|410670940|ref|YP_006923311.1|	-	0.00011	22.3	1.3	0.00026	21.0	1.3	1.6	1	1	0	1	1	1	1	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|410670940|ref|YP_006923311.1|	-	0.00031	20.2	0.5	0.15	11.6	0.0	2.3	2	0	0	2	2	2	1	TFIIB	zinc-binding
zf-H2C2_2	PF13465.6	gi|410670940|ref|YP_006923311.1|	-	0.0013	19.1	2.7	0.77	10.3	0.1	2.2	2	0	0	2	2	2	2	Zinc-finger	double	domain
zf-ribbon_3	PF13248.6	gi|410670940|ref|YP_006923311.1|	-	0.0026	17.1	2.5	0.071	12.5	0.1	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|410670940|ref|YP_006923311.1|	-	0.0029	17.5	1.0	0.032	14.1	0.0	2.2	2	0	0	2	2	2	1	SprT-like	zinc	ribbon	domain
zinc_ribbon_15	PF17032.5	gi|410670940|ref|YP_006923311.1|	-	0.0035	18.1	0.0	0.0055	17.4	0.0	1.3	1	0	0	1	1	1	1	zinc-ribbon	family
zf-LITAF-like	PF10601.9	gi|410670940|ref|YP_006923311.1|	-	0.0038	17.5	0.9	1.2	9.4	0.1	2.3	2	1	0	2	2	2	1	LITAF-like	zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|410670940|ref|YP_006923311.1|	-	0.0055	16.6	3.5	0.046	13.7	3.5	2.1	1	1	0	1	1	1	1	zinc-ribbon	domain
DUF3797	PF12677.7	gi|410670940|ref|YP_006923311.1|	-	0.01	15.7	1.3	0.86	9.5	0.3	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
zf-HIT	PF04438.16	gi|410670940|ref|YP_006923311.1|	-	0.021	14.7	4.7	0.29	11.1	0.2	2.2	2	0	0	2	2	2	0	HIT	zinc	finger
zinc_ribbon_10	PF10058.9	gi|410670940|ref|YP_006923311.1|	-	0.026	14.2	1.1	0.16	11.7	0.1	2.1	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
DUF35_N	PF12172.8	gi|410670940|ref|YP_006923311.1|	-	0.031	14.2	0.6	1.3	9.0	0.0	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
HypA	PF01155.19	gi|410670940|ref|YP_006923311.1|	-	0.036	14.1	0.0	0.048	13.7	0.0	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
CpXC	PF14353.6	gi|410670940|ref|YP_006923311.1|	-	0.061	13.4	0.2	3.1	7.9	0.0	2.1	2	0	0	2	2	2	0	CpXC	protein
HalOD2	PF18547.1	gi|410670940|ref|YP_006923311.1|	-	0.071	13.0	0.8	2.3	8.2	0.0	2.3	2	0	0	2	2	2	0	Halobacterial	output	domain	2
Zn_Tnp_IS1595	PF12760.7	gi|410670940|ref|YP_006923311.1|	-	0.077	13.0	3.7	0.71	9.9	4.3	2.0	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Ogr_Delta	PF04606.12	gi|410670940|ref|YP_006923311.1|	-	0.078	13.0	0.4	6.3	6.9	0.0	2.2	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
Terminase_GpA	PF05876.12	gi|410670940|ref|YP_006923311.1|	-	0.08	11.5	0.3	0.098	11.2	0.3	1.1	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
Sgf11	PF08209.11	gi|410670940|ref|YP_006923311.1|	-	0.083	12.5	5.7	0.7	9.5	0.7	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
DUF1610	PF07754.11	gi|410670940|ref|YP_006923311.1|	-	0.085	12.8	7.9	0.16	12.0	0.9	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf-C2H2	PF00096.26	gi|410670940|ref|YP_006923311.1|	-	0.09	13.3	3.1	1	9.9	0.2	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf_UBZ	PF18439.1	gi|410670940|ref|YP_006923311.1|	-	0.095	12.3	0.7	2.5	7.8	0.0	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-C2H2_4	PF13894.6	gi|410670940|ref|YP_006923311.1|	-	0.098	13.5	0.8	5.3	8.2	0.1	2.4	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zinc_ribbon_5	PF13719.6	gi|410670940|ref|YP_006923311.1|	-	0.13	12.1	0.9	1.2	8.9	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-DNA_Pol	PF08996.10	gi|410670940|ref|YP_006923311.1|	-	0.13	12.0	0.1	0.18	11.6	0.1	1.1	1	0	0	1	1	1	0	DNA	Polymerase	alpha	zinc	finger
zf-RING_7	PF02591.15	gi|410670940|ref|YP_006923311.1|	-	0.13	12.4	1.6	7.8	6.8	0.2	2.3	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
MCM_OB	PF17207.3	gi|410670940|ref|YP_006923311.1|	-	0.14	12.0	0.0	0.19	11.6	0.0	1.2	1	0	0	1	1	1	0	MCM	OB	domain
zf-ISL3	PF14690.6	gi|410670940|ref|YP_006923311.1|	-	0.17	12.6	1.6	14	6.4	0.1	2.6	3	0	0	3	3	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-Di19	PF05605.12	gi|410670940|ref|YP_006923311.1|	-	0.17	12.2	0.5	0.55	10.6	0.5	1.7	1	1	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
Cys_rich_CPXG	PF14255.6	gi|410670940|ref|YP_006923311.1|	-	0.22	11.4	2.0	2.7	7.9	2.4	2.0	1	1	1	2	2	2	0	Cysteine-rich	CPXCG
TFIIS_C	PF01096.18	gi|410670940|ref|YP_006923311.1|	-	0.24	11.3	2.4	11	6.0	0.2	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Rubredoxin_2	PF18073.1	gi|410670940|ref|YP_006923311.1|	-	0.59	9.9	4.1	3.5	7.4	0.3	2.4	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf_Rg	PF17915.1	gi|410670940|ref|YP_006923311.1|	-	0.6	9.5	2.9	6.2	6.3	0.1	2.2	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
zinc_ribbon_2	PF13240.6	gi|410670940|ref|YP_006923311.1|	-	1.1	9.0	7.5	1.3	8.8	0.4	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
HATPase_c	PF02518.26	gi|410670941|ref|YP_006923312.1|	-	1.8e-21	76.7	0.2	6.6e-21	74.9	0.0	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF	PF01590.26	gi|410670941|ref|YP_006923312.1|	-	1.4e-11	45.2	0.0	2.4e-11	44.4	0.0	1.4	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.6	gi|410670941|ref|YP_006923312.1|	-	5.6e-10	39.7	0.0	9.1e-10	39.0	0.0	1.4	1	0	0	1	1	1	1	GAF	domain
GAF_3	PF13492.6	gi|410670941|ref|YP_006923312.1|	-	6.8e-09	36.2	0.0	1.2e-08	35.3	0.0	1.5	1	0	0	1	1	1	1	GAF	domain
HATPase_c_2	PF13581.6	gi|410670941|ref|YP_006923312.1|	-	0.00061	19.7	0.0	0.0014	18.6	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HisKA	PF00512.25	gi|410670941|ref|YP_006923312.1|	-	0.046	13.8	0.9	0.29	11.2	0.1	2.6	1	1	1	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
Terminase_6C	PF17289.2	gi|410670941|ref|YP_006923312.1|	-	0.083	13.0	0.0	0.27	11.3	0.0	1.9	1	0	0	1	1	1	0	Terminase	RNaseH-like	domain
PAS_4	PF08448.10	gi|410670941|ref|YP_006923312.1|	-	0.093	13.0	0.0	0.17	12.1	0.0	1.5	1	0	0	1	1	1	0	PAS	fold
Ion_trans	PF00520.31	gi|410670942|ref|YP_006923313.1|	-	4.2e-33	114.6	18.4	4.9e-33	114.4	18.4	1.0	1	0	0	1	1	1	1	Ion	transport	protein
Ion_trans_2	PF07885.16	gi|410670942|ref|YP_006923313.1|	-	1.3e-13	50.6	10.0	1.3e-13	50.6	10.0	2.5	2	0	0	2	2	2	1	Ion	channel
DZR	PF12773.7	gi|410670942|ref|YP_006923313.1|	-	0.068	13.2	0.5	0.11	12.5	0.5	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
PKD_channel	PF08016.12	gi|410670942|ref|YP_006923313.1|	-	0.17	10.5	16.7	17	4.0	17.0	2.4	1	1	0	1	1	1	0	Polycystin	cation	channel
IMS	PF00817.20	gi|410670943|ref|YP_006923314.1|	-	5.1e-40	136.9	0.2	7.9e-40	136.3	0.2	1.3	1	0	0	1	1	1	1	impB/mucB/samB	family
IMS_C	PF11799.8	gi|410670943|ref|YP_006923314.1|	-	5.2e-15	56.2	0.1	1.1e-14	55.2	0.1	1.5	1	0	0	1	1	1	1	impB/mucB/samB	family	C-terminal	domain
IMS_HHH	PF11798.8	gi|410670943|ref|YP_006923314.1|	-	1.2e-10	41.1	0.1	2.6e-10	40.0	0.1	1.7	1	0	0	1	1	1	1	IMS	family	HHH	motif
DNA_pol_lambd_f	PF10391.9	gi|410670943|ref|YP_006923314.1|	-	0.0042	16.9	0.0	0.013	15.4	0.0	1.8	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
HHH_5	PF14520.6	gi|410670943|ref|YP_006923314.1|	-	0.015	15.9	0.1	0.053	14.1	0.0	1.9	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
Cdd1	PF11731.8	gi|410670943|ref|YP_006923314.1|	-	0.039	14.2	0.0	0.15	12.3	0.0	1.9	2	0	0	2	2	2	0	Pathogenicity	locus
PALP	PF00291.25	gi|410670944|ref|YP_006923315.1|	-	2.2e-62	211.2	0.0	2.4e-62	211.0	0.0	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
NapD	PF03927.13	gi|410670944|ref|YP_006923315.1|	-	0.015	15.4	0.1	13	5.9	0.0	3.2	3	0	0	3	3	3	0	NapD	protein
ADH_zinc_N	PF00107.26	gi|410670944|ref|YP_006923315.1|	-	0.12	12.4	0.1	1.1	9.2	0.1	2.5	2	1	0	2	2	2	0	Zinc-binding	dehydrogenase
Hexapep	PF00132.24	gi|410670945|ref|YP_006923316.1|	-	1.2e-10	40.7	8.7	7.1e-06	25.5	1.1	3.3	2	2	0	2	2	2	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|410670945|ref|YP_006923316.1|	-	0.00021	21.0	9.4	0.53	10.1	2.3	4.2	3	1	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
SATase_N	PF06426.14	gi|410670945|ref|YP_006923316.1|	-	0.0097	16.3	0.0	0.019	15.4	0.0	1.6	1	1	0	1	1	1	1	Serine	acetyltransferase,	N-terminal
Methyltransf_12	PF08242.12	gi|410670947|ref|YP_006923318.1|	-	7.2e-16	58.7	0.0	1.2e-15	58.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|410670947|ref|YP_006923318.1|	-	2e-13	50.9	0.0	4.3e-13	49.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410670947|ref|YP_006923318.1|	-	1.2e-09	38.7	0.0	2.3e-09	37.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|410670947|ref|YP_006923318.1|	-	1.4e-08	34.8	0.0	2.5e-08	33.9	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|410670947|ref|YP_006923318.1|	-	1.7e-07	30.8	0.0	2e-07	30.6	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_31	PF13847.6	gi|410670947|ref|YP_006923318.1|	-	5.2e-06	26.3	0.0	7.7e-06	25.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_2	PF00891.18	gi|410670947|ref|YP_006923318.1|	-	0.00017	20.9	0.0	0.00022	20.6	0.0	1.1	1	0	0	1	1	1	1	O-methyltransferase	domain
Methyltransf_4	PF02390.17	gi|410670947|ref|YP_006923318.1|	-	0.071	12.6	0.0	0.23	10.9	0.0	1.7	2	0	0	2	2	2	0	Putative	methyltransferase
MTS	PF05175.14	gi|410670947|ref|YP_006923318.1|	-	0.097	12.2	0.0	0.17	11.4	0.0	1.4	2	0	0	2	2	2	0	Methyltransferase	small	domain
N_formyltrans_C	PF18216.1	gi|410670947|ref|YP_006923318.1|	-	0.17	11.6	0.0	3.7	7.3	0.0	2.3	2	0	0	2	2	2	0	N-formyltransferase	dimerization	C-terminal	domain
DUF4346	PF14251.6	gi|410670949|ref|YP_006923320.1|	-	1.7e-13	50.7	0.2	2.1e-07	31.0	0.1	2.3	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4346)
Usp	PF00582.26	gi|410670951|ref|YP_006923322.1|	-	1.3e-35	122.9	0.5	1.5e-35	122.7	0.5	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF3253	PF11625.8	gi|410670951|ref|YP_006923322.1|	-	0.021	15.1	0.1	0.035	14.3	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3253)
UPF0182	PF03699.13	gi|410670952|ref|YP_006923323.1|	-	6.7e-277	920.6	13.5	7.7e-277	920.4	13.5	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0182)
FAM209	PF15206.6	gi|410670954|ref|YP_006923325.1|	-	0.012	15.4	0.0	0.19	11.5	0.0	2.2	2	0	0	2	2	2	0	FAM209	family
Lactamase_B_2	PF12706.7	gi|410670955|ref|YP_006923326.1|	-	2.1e-39	135.2	0.1	2.7e-39	134.8	0.1	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|410670955|ref|YP_006923326.1|	-	1.3e-13	51.2	0.1	1.8e-13	50.7	0.1	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|410670955|ref|YP_006923326.1|	-	0.00029	20.9	2.7	0.00034	20.7	0.8	1.9	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
RDD	PF06271.12	gi|410670957|ref|YP_006923328.1|	-	2.7e-23	82.8	5.4	3.1e-23	82.5	5.4	1.1	1	0	0	1	1	1	1	RDD	family
HTH_32	PF13565.6	gi|410670959|ref|YP_006923330.1|	-	1.1e-12	48.4	0.0	1.7e-12	47.8	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|410670959|ref|YP_006923330.1|	-	1e-08	35.1	0.0	2e-08	34.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_33	PF13592.6	gi|410670959|ref|YP_006923330.1|	-	2.2e-08	33.6	0.0	4.7e-08	32.6	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|410670959|ref|YP_006923330.1|	-	1.1e-06	28.2	0.1	4.9e-06	26.2	0.0	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|410670959|ref|YP_006923330.1|	-	0.00083	19.4	0.0	0.0019	18.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_ABP1_N	PF18107.1	gi|410670959|ref|YP_006923330.1|	-	0.0031	17.2	0.1	0.0053	16.4	0.1	1.3	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
DDE_3	PF13358.6	gi|410670960|ref|YP_006923331.1|	-	6.9e-23	81.0	0.1	1e-22	80.4	0.1	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_1	PF03184.19	gi|410670960|ref|YP_006923331.1|	-	1.7e-07	31.1	0.1	2.1e-07	30.8	0.1	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|410670960|ref|YP_006923331.1|	-	1.1e-05	25.6	0.0	1.8e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	Integrase	core	domain
Ribosomal_S2	PF00318.20	gi|410670960|ref|YP_006923331.1|	-	0.0074	15.5	1.6	1	8.5	0.1	2.1	2	0	0	2	2	2	2	Ribosomal	protein	S2
DDE_Tnp_ISAZ013	PF07592.11	gi|410670960|ref|YP_006923331.1|	-	0.031	13.2	0.1	0.042	12.8	0.1	1.2	1	0	0	1	1	1	0	Rhodopirellula	transposase	DDE	domain
Wzy_C	PF04932.15	gi|410670961|ref|YP_006923332.1|	-	0.12	12.0	0.3	0.18	11.4	0.2	1.3	1	1	0	1	1	1	0	O-Antigen	ligase
Chordopox_G3	PF06129.12	gi|410670961|ref|YP_006923332.1|	-	0.14	12.8	1.6	1.1	10.0	1.6	2.0	1	1	0	1	1	1	0	Chordopoxvirus	G3	protein
DUF772	PF05598.11	gi|410670962|ref|YP_006923333.1|	-	2.5e-21	75.5	0.1	6.7e-21	74.1	0.0	1.7	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|410670962|ref|YP_006923333.1|	-	1.6e-14	54.1	0.1	2.9e-14	53.2	0.1	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_4	PF13359.6	gi|410670962|ref|YP_006923333.1|	-	0.00025	20.7	0.1	0.00045	19.9	0.1	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1_3	PF13612.6	gi|410670962|ref|YP_006923333.1|	-	0.00048	20.2	0.1	0.001	19.1	0.1	1.6	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|410670962|ref|YP_006923333.1|	-	0.037	14.2	0.2	0.069	13.4	0.2	1.4	1	0	0	1	1	1	0	Transposase	DDE	domain
RPT	PF13446.6	gi|410670962|ref|YP_006923333.1|	-	0.12	12.3	0.0	1	9.4	0.0	2.4	2	0	0	2	2	2	0	A	repeated	domain	in	UCH-protein
Aldo_ket_red	PF00248.21	gi|410670964|ref|YP_006923335.1|	-	2.4e-39	135.3	0.0	1.1e-37	129.9	0.0	2.1	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Fer4_17	PF13534.6	gi|410670964|ref|YP_006923335.1|	-	2.5e-12	47.1	5.7	5.6e-12	46.0	5.7	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410670964|ref|YP_006923335.1|	-	5.5e-10	39.3	6.5	1.1e-09	38.3	6.5	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|410670964|ref|YP_006923335.1|	-	2.4e-07	30.9	1.5	0.0013	18.9	0.1	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|410670964|ref|YP_006923335.1|	-	4.2e-06	27.1	5.3	9.5e-06	26.0	5.3	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|410670964|ref|YP_006923335.1|	-	5.4e-05	22.8	11.1	0.002	17.9	2.4	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410670964|ref|YP_006923335.1|	-	0.00012	22.1	7.6	0.067	13.3	0.5	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|410670964|ref|YP_006923335.1|	-	0.00026	21.8	2.4	0.22	12.4	0.2	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410670964|ref|YP_006923335.1|	-	0.00064	20.6	5.8	0.027	15.4	0.9	2.5	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_6	PF12837.7	gi|410670964|ref|YP_006923335.1|	-	0.0017	18.4	1.1	0.0017	18.4	1.1	2.5	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|410670964|ref|YP_006923335.1|	-	0.0017	18.4	13.2	0.0048	17.0	1.8	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|410670964|ref|YP_006923335.1|	-	0.0017	18.1	2.6	0.0049	16.6	0.1	2.2	2	0	0	2	2	2	1	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_2	PF12797.7	gi|410670964|ref|YP_006923335.1|	-	0.013	15.5	13.6	0.061	13.4	2.8	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DHDPS	PF00701.22	gi|410670964|ref|YP_006923335.1|	-	0.022	13.5	0.0	0.038	12.7	0.0	1.3	1	0	0	1	1	1	0	Dihydrodipicolinate	synthetase	family
GP11	PF08677.10	gi|410670964|ref|YP_006923335.1|	-	0.13	11.7	0.0	0.22	11.0	0.0	1.2	1	0	0	1	1	1	0	GP11	baseplate	wedge	protein
Fer4_13	PF13370.6	gi|410670964|ref|YP_006923335.1|	-	0.14	12.8	0.1	0.14	12.8	0.1	2.4	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_7	PF12838.7	gi|410670964|ref|YP_006923335.1|	-	0.16	12.6	14.7	1.9	9.1	15.0	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410670964|ref|YP_006923335.1|	-	0.76	10.4	12.9	0.38	11.4	1.9	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Med27	PF11571.8	gi|410670964|ref|YP_006923335.1|	-	0.88	10.0	3.5	2.2	8.7	0.1	2.3	1	1	1	2	2	2	0	Mediator	complex	subunit	27
Acetyltransf_1	PF00583.25	gi|410670965|ref|YP_006923336.1|	-	2.6e-14	53.4	0.0	3e-14	53.3	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|410670965|ref|YP_006923336.1|	-	1.5e-13	50.8	0.0	2e-13	50.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|410670965|ref|YP_006923336.1|	-	5.2e-12	46.0	0.2	7e-12	45.6	0.2	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|410670965|ref|YP_006923336.1|	-	1.4e-07	31.7	0.2	3.5e-07	30.4	0.2	1.8	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|410670965|ref|YP_006923336.1|	-	0.0053	16.7	0.0	0.0088	16.0	0.0	1.3	1	1	0	1	1	1	1	FR47-like	protein
Acetyltransf_CG	PF14542.6	gi|410670965|ref|YP_006923336.1|	-	0.0092	16.1	0.0	0.013	15.6	0.0	1.3	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_15	PF17013.5	gi|410670965|ref|YP_006923336.1|	-	0.043	13.3	0.6	0.062	12.8	0.6	1.6	1	1	0	1	1	1	0	Putative	acetyl-transferase
MOZ_SAS	PF01853.18	gi|410670965|ref|YP_006923336.1|	-	0.086	12.5	0.0	0.11	12.2	0.0	1.4	1	0	0	1	1	1	0	MOZ/SAS	family
GNAT_acetyltr_2	PF13718.6	gi|410670965|ref|YP_006923336.1|	-	0.14	11.5	0.0	0.2	11.0	0.0	1.2	1	0	0	1	1	1	0	GNAT	acetyltransferase	2
Sulfate_transp	PF00916.20	gi|410670966|ref|YP_006923337.1|	-	7.9e-86	288.2	32.4	7.9e-86	288.2	32.4	1.4	2	0	0	2	2	2	1	Sulfate	permease	family
STAS	PF01740.21	gi|410670966|ref|YP_006923337.1|	-	1.8e-13	50.2	0.1	3.3e-13	49.3	0.1	1.4	1	0	0	1	1	1	1	STAS	domain
MFS_MOT1	PF16983.5	gi|410670966|ref|YP_006923337.1|	-	2.8e-05	24.5	7.8	2.8e-05	24.5	7.8	3.8	4	0	0	4	4	4	2	Molybdate	transporter	of	MFS	superfamily
HhH-GPD	PF00730.25	gi|410670967|ref|YP_006923338.1|	-	6.6e-22	78.0	0.0	8.9e-22	77.6	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|410670967|ref|YP_006923338.1|	-	9.3e-10	37.9	0.2	9.3e-09	34.7	0.0	2.3	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
EndIII_4Fe-2S	PF10576.9	gi|410670967|ref|YP_006923338.1|	-	1.1e-05	25.6	3.7	1.7e-05	25.0	3.7	1.3	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
HHH_5	PF14520.6	gi|410670967|ref|YP_006923338.1|	-	0.00015	22.3	0.0	0.016	15.8	0.0	2.4	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
5_3_exonuc	PF01367.20	gi|410670967|ref|YP_006923338.1|	-	0.0061	17.1	0.0	0.013	16.1	0.0	1.5	1	1	0	1	1	1	1	5'-3'	exonuclease,	C-terminal	SAM	fold
TPP_enzyme_C	PF02775.21	gi|410670968|ref|YP_006923339.1|	-	1.5e-28	99.5	0.1	2.4e-28	98.9	0.1	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR_N	PF01855.19	gi|410670969|ref|YP_006923340.1|	-	1.6e-66	224.3	0.1	2.1e-66	224.0	0.1	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
PFOR_II	PF17147.4	gi|410670969|ref|YP_006923340.1|	-	1.9e-29	101.9	0.2	4.6e-29	100.7	0.2	1.7	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|410670969|ref|YP_006923340.1|	-	3.8e-07	30.0	0.1	7.8e-07	29.0	0.1	1.5	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
KH_5	PF13184.6	gi|410670969|ref|YP_006923340.1|	-	1.5	8.9	4.4	15	5.7	1.4	2.8	2	1	0	2	2	2	0	NusA-like	KH	domain
Fer4	PF00037.27	gi|410670970|ref|YP_006923341.1|	-	4.4e-14	51.6	12.8	7.4e-08	31.9	2.7	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410670970|ref|YP_006923341.1|	-	1.2e-10	41.3	6.1	1.8e-10	40.8	6.1	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|410670970|ref|YP_006923341.1|	-	1.4e-10	41.6	17.7	2.7e-07	31.1	9.3	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410670970|ref|YP_006923341.1|	-	3.3e-10	39.6	15.2	7.1e-06	25.9	2.2	2.5	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|410670970|ref|YP_006923341.1|	-	2.2e-09	36.8	9.1	0.00019	21.3	1.3	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|410670970|ref|YP_006923341.1|	-	3e-09	36.9	18.4	9e-08	32.2	8.4	1.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410670970|ref|YP_006923341.1|	-	7e-07	30.1	8.1	0.0017	19.2	2.4	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_10	PF13237.6	gi|410670970|ref|YP_006923341.1|	-	1.8e-06	27.9	11.6	5.9e-05	23.1	12.2	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410670970|ref|YP_006923341.1|	-	2.9e-05	24.5	7.6	0.039	14.5	1.2	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|410670970|ref|YP_006923341.1|	-	3.1e-05	24.6	6.4	0.013	16.2	0.7	2.2	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.7	gi|410670970|ref|YP_006923341.1|	-	0.00025	21.3	14.4	0.0094	16.4	1.7	2.6	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|410670970|ref|YP_006923341.1|	-	0.0014	19.1	11.6	0.021	15.4	1.5	2.2	1	1	1	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_8	PF13183.6	gi|410670970|ref|YP_006923341.1|	-	0.0015	19.0	12.7	0.13	12.7	3.0	2.2	1	1	3	4	4	3	3	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|410670970|ref|YP_006923341.1|	-	0.027	15.3	10.9	0.14	13.1	1.5	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|410670970|ref|YP_006923341.1|	-	0.14	13.1	14.8	1.3	10.2	2.3	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
POR	PF01558.18	gi|410670971|ref|YP_006923342.1|	-	2.8e-38	131.7	0.1	3.3e-38	131.5	0.1	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Dus	PF01207.17	gi|410670972|ref|YP_006923343.1|	-	6.2e-77	258.7	0.0	7.4e-77	258.5	0.0	1.0	1	0	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
SOR_SNZ	PF01680.17	gi|410670972|ref|YP_006923343.1|	-	0.0011	18.8	2.7	0.11	12.3	0.2	2.7	2	1	1	3	3	3	2	SOR/SNZ	family
Oxidored_FMN	PF00724.20	gi|410670972|ref|YP_006923343.1|	-	0.0013	18.1	0.0	0.0019	17.5	0.0	1.3	1	0	0	1	1	1	1	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
His_biosynth	PF00977.21	gi|410670972|ref|YP_006923343.1|	-	0.02	14.4	0.0	0.09	12.2	0.0	1.9	1	1	1	2	2	2	0	Histidine	biosynthesis	protein
NMO	PF03060.15	gi|410670972|ref|YP_006923343.1|	-	0.035	13.5	0.3	0.11	11.9	0.3	1.9	1	1	0	1	1	1	0	Nitronate	monooxygenase
PdxJ	PF03740.13	gi|410670972|ref|YP_006923343.1|	-	0.056	12.6	0.2	0.089	11.9	0.2	1.3	1	0	0	1	1	1	0	Pyridoxal	phosphate	biosynthesis	protein	PdxJ
AAA_17	PF13207.6	gi|410670973|ref|YP_006923344.1|	-	2.9e-13	50.4	0.3	4.4e-13	49.8	0.3	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|410670973|ref|YP_006923344.1|	-	1.9e-09	38.2	0.0	2.6e-09	37.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|410670973|ref|YP_006923344.1|	-	1.2e-05	25.5	0.0	1.5e-05	25.2	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CoaE	PF01121.20	gi|410670973|ref|YP_006923344.1|	-	0.0017	18.1	0.1	0.12	12.1	0.0	2.2	2	0	0	2	2	2	2	Dephospho-CoA	kinase
RNA_binding	PF01877.17	gi|410670974|ref|YP_006923345.1|	-	4.3e-14	52.8	0.1	6.6e-14	52.2	0.1	1.3	1	0	0	1	1	1	1	RNA	binding
AP_endonuc_2	PF01261.24	gi|410670975|ref|YP_006923346.1|	-	7.9e-33	113.7	0.0	9.3e-33	113.4	0.0	1.0	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
CsbD	PF05532.12	gi|410670976|ref|YP_006923347.1|	-	5.2e-17	61.5	6.4	5.8e-17	61.3	6.4	1.1	1	0	0	1	1	1	1	CsbD-like
MT0933_antitox	PF14013.6	gi|410670976|ref|YP_006923347.1|	-	0.16	12.3	3.9	3.7	7.9	0.1	2.1	2	0	0	2	2	2	0	MT0933-like	antitoxin	protein
Latarcin	PF10279.9	gi|410670977|ref|YP_006923348.1|	-	0.0029	18.0	0.7	0.0033	17.8	0.7	1.0	1	0	0	1	1	1	1	Latarcin	precursor
BLOC1_2	PF10046.9	gi|410670977|ref|YP_006923348.1|	-	0.013	15.8	0.0	0.014	15.7	0.0	1.1	1	0	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF2205	PF10224.9	gi|410670977|ref|YP_006923348.1|	-	0.084	12.9	0.2	0.1	12.6	0.2	1.2	1	0	0	1	1	1	0	Short	coiled-coil	protein
DUF4113	PF13438.6	gi|410670977|ref|YP_006923348.1|	-	0.12	12.5	1.7	9	6.5	0.3	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4113)
DUF87	PF01935.17	gi|410670978|ref|YP_006923349.1|	-	1e-10	42.1	0.0	3.3e-10	40.5	0.0	2.0	1	1	0	1	1	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|410670978|ref|YP_006923349.1|	-	1.7e-10	40.1	0.0	4.6e-07	28.8	0.0	2.1	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
AAA_10	PF12846.7	gi|410670978|ref|YP_006923349.1|	-	1.1e-05	24.5	0.0	0.042	12.8	0.0	2.4	2	0	0	2	2	2	2	AAA-like	domain
AAA	PF00004.29	gi|410670978|ref|YP_006923349.1|	-	4.6e-05	23.9	0.0	0.27	11.7	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|410670978|ref|YP_006923349.1|	-	6.3e-05	23.3	0.0	0.0019	18.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|410670978|ref|YP_006923349.1|	-	0.0009	19.7	0.0	0.12	12.8	0.0	2.4	2	0	0	2	2	2	1	AAA	ATPase	domain
DEAD	PF00270.29	gi|410670978|ref|YP_006923349.1|	-	0.0034	17.2	0.0	0.8	9.5	0.0	2.3	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
RNA_helicase	PF00910.22	gi|410670978|ref|YP_006923349.1|	-	0.0035	17.7	0.0	0.0076	16.6	0.0	1.6	1	0	0	1	1	1	1	RNA	helicase
AAA_7	PF12775.7	gi|410670978|ref|YP_006923349.1|	-	0.0038	16.8	0.0	0.0074	15.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
ResIII	PF04851.15	gi|410670978|ref|YP_006923349.1|	-	0.0048	16.9	0.0	0.12	12.3	0.0	2.3	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
TrwB_AAD_bind	PF10412.9	gi|410670978|ref|YP_006923349.1|	-	0.0051	15.8	0.0	0.012	14.6	0.0	1.5	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
FtsK_SpoIIIE	PF01580.18	gi|410670978|ref|YP_006923349.1|	-	0.013	14.9	0.0	0.46	9.8	0.0	2.2	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
T2SSE	PF00437.20	gi|410670978|ref|YP_006923349.1|	-	0.049	12.7	0.0	0.092	11.8	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
NurA	PF09376.10	gi|410670979|ref|YP_006923350.1|	-	2.8e-08	33.8	0.0	5e-08	32.9	0.0	1.4	1	0	0	1	1	1	1	NurA	domain
SSF	PF00474.17	gi|410670980|ref|YP_006923351.1|	-	7.8e-36	123.8	36.5	7.8e-36	123.8	36.5	1.6	2	0	0	2	2	2	1	Sodium:solute	symporter	family
Nramp	PF01566.18	gi|410670980|ref|YP_006923351.1|	-	0.014	14.4	33.6	0.016	14.2	32.1	2.0	1	1	0	1	1	1	0	Natural	resistance-associated	macrophage	protein
Glyoxalase_2	PF12681.7	gi|410670983|ref|YP_006923354.1|	-	3.1e-14	52.9	0.0	3.7e-14	52.7	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.25	gi|410670983|ref|YP_006923354.1|	-	7.1e-13	48.9	0.0	8.1e-13	48.7	0.0	1.0	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|410670983|ref|YP_006923354.1|	-	8.7e-06	26.5	0.0	1.1e-05	26.2	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
CRISPR_Cas9_WED	PF18061.1	gi|410670984|ref|YP_006923355.1|	-	0.15	12.1	0.0	0.3	11.2	0.0	1.4	1	0	0	1	1	1	0	CRISPR-Cas9	WED	domain
SpoIIM	PF01944.17	gi|410670986|ref|YP_006923356.1|	-	6.7e-14	52.2	10.3	6.7e-14	52.2	10.3	2.0	2	0	0	2	2	2	1	Stage	II	sporulation	protein	M
ATPase	PF06745.13	gi|410670987|ref|YP_006923358.1|	-	2.6e-46	157.8	0.0	5.1e-46	156.9	0.0	1.4	1	1	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|410670987|ref|YP_006923358.1|	-	3.8e-07	29.9	0.0	0.0017	18.0	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
DnaB_C	PF03796.15	gi|410670987|ref|YP_006923358.1|	-	6.6e-06	25.6	0.0	1e-05	25.1	0.0	1.3	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_24	PF13479.6	gi|410670987|ref|YP_006923358.1|	-	0.00032	20.5	0.4	0.26	11.0	0.3	2.9	1	1	1	2	2	2	2	AAA	domain
Rad51	PF08423.11	gi|410670987|ref|YP_006923358.1|	-	0.0015	17.9	0.1	0.21	10.8	0.0	2.1	2	0	0	2	2	2	1	Rad51
AAA_22	PF13401.6	gi|410670987|ref|YP_006923358.1|	-	0.0083	16.4	0.0	0.027	14.7	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
GvpD	PF07088.11	gi|410670987|ref|YP_006923358.1|	-	0.012	14.2	0.1	0.063	11.9	0.1	1.9	1	1	0	1	1	1	0	GvpD	gas	vesicle	protein
AAA_19	PF13245.6	gi|410670987|ref|YP_006923358.1|	-	0.017	15.5	0.0	0.04	14.3	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|410670987|ref|YP_006923358.1|	-	0.027	14.6	0.1	0.16	12.2	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|410670987|ref|YP_006923358.1|	-	0.039	14.3	0.0	0.076	13.4	0.0	1.3	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|410670987|ref|YP_006923358.1|	-	0.06	13.1	0.0	0.089	12.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|410670987|ref|YP_006923358.1|	-	0.072	13.6	0.2	0.13	12.8	0.2	1.7	1	1	0	1	1	1	0	AAA	domain
DAP3	PF10236.9	gi|410670987|ref|YP_006923358.1|	-	0.093	11.9	0.0	0.18	11.0	0.0	1.4	1	0	0	1	1	1	0	Mitochondrial	ribosomal	death-associated	protein	3
AAA_28	PF13521.6	gi|410670987|ref|YP_006923358.1|	-	0.11	12.7	0.1	1.7	8.8	0.1	2.2	1	1	1	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|410670987|ref|YP_006923358.1|	-	0.11	12.5	0.0	0.3	11.1	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
NACHT	PF05729.12	gi|410670987|ref|YP_006923358.1|	-	0.12	12.2	0.0	0.28	11.1	0.0	1.6	2	0	0	2	2	2	0	NACHT	domain
cobW	PF02492.19	gi|410670987|ref|YP_006923358.1|	-	0.13	11.9	0.2	0.28	10.8	0.1	1.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA	PF00004.29	gi|410670987|ref|YP_006923358.1|	-	0.14	12.6	0.2	0.51	10.8	0.0	2.0	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_11	PF13086.6	gi|410670987|ref|YP_006923358.1|	-	0.2	11.4	0.0	0.33	10.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
APC_r	PF05923.12	gi|410670988|ref|YP_006923359.1|	-	0.55	10.0	3.7	6	6.7	0.0	2.3	2	0	0	2	2	2	0	APC	repeat
GTP_EFTU_D2	PF03144.25	gi|410670989|ref|YP_006923360.1|	-	1.5e-08	34.9	0.1	5.2e-08	33.2	0.1	2.0	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
GTP_EFTU	PF00009.27	gi|410670989|ref|YP_006923360.1|	-	3.5e-06	26.7	0.1	0.0015	18.1	0.0	2.2	1	1	1	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D4	PF14578.6	gi|410670989|ref|YP_006923360.1|	-	0.00064	19.6	1.4	0.017	15.0	0.2	2.6	3	0	0	3	3	3	1	Elongation	factor	Tu	domain	4
F420_oxidored	PF03807.17	gi|410670989|ref|YP_006923360.1|	-	0.0025	18.3	0.0	0.006	17.1	0.0	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
MobB	PF03205.14	gi|410670989|ref|YP_006923360.1|	-	0.0048	16.8	0.7	2.5	8.0	0.0	2.4	2	0	0	2	2	2	2	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_18	PF13238.6	gi|410670989|ref|YP_006923360.1|	-	0.011	16.3	0.1	0.022	15.3	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
PduV-EutP	PF10662.9	gi|410670989|ref|YP_006923360.1|	-	0.03	14.1	1.1	0.14	11.9	1.1	2.2	1	1	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_28	PF13521.6	gi|410670989|ref|YP_006923360.1|	-	0.046	14.0	0.3	0.078	13.2	0.3	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|410670989|ref|YP_006923360.1|	-	0.055	13.2	0.2	0.11	12.1	0.2	1.5	1	0	0	1	1	1	0	AAA	domain
Arf	PF00025.21	gi|410670989|ref|YP_006923360.1|	-	0.11	12.0	0.5	9	5.7	0.1	2.3	2	0	0	2	2	2	0	ADP-ribosylation	factor	family
Lig_C	PF18330.1	gi|410670990|ref|YP_006923361.1|	-	3.2e-40	137.0	1.3	4.9e-40	136.4	0.3	1.8	2	0	0	2	2	2	1	Ligase	Pab1020	C-terminal	region
RNA_ligase	PF09414.10	gi|410670990|ref|YP_006923361.1|	-	5.4e-18	65.8	0.0	9.9e-18	65.0	0.0	1.4	1	0	0	1	1	1	1	RNA	ligase
DNA_ligase_A_M	PF01068.21	gi|410670990|ref|YP_006923361.1|	-	1.9e-06	27.7	0.0	0.00012	21.8	0.0	2.2	1	1	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
CBS	PF00571.28	gi|410670991|ref|YP_006923362.1|	-	2.6e-44	149.5	15.2	2.4e-14	53.5	0.7	4.1	4	0	0	4	4	4	4	CBS	domain
HNH_3	PF13392.6	gi|410670991|ref|YP_006923362.1|	-	0.1	12.4	0.1	0.29	10.9	0.1	1.8	1	0	0	1	1	1	0	HNH	endonuclease
Haem_degrading	PF03928.14	gi|410670991|ref|YP_006923362.1|	-	0.14	12.2	0.4	7.2	6.7	0.0	2.5	3	0	0	3	3	3	0	Haem-degrading
CBS	PF00571.28	gi|410670992|ref|YP_006923363.1|	-	6.8e-38	128.9	17.8	4.1e-12	46.4	0.1	4.2	4	0	0	4	4	4	4	CBS	domain
ABC2_membrane_3	PF12698.7	gi|410670992|ref|YP_006923363.1|	-	0.14	11.2	0.7	0.3	10.1	0.7	1.6	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
CBS	PF00571.28	gi|410670994|ref|YP_006923365.1|	-	3.6e-23	81.8	9.8	2.9e-11	43.6	0.4	2.2	2	0	0	2	2	2	2	CBS	domain
tRNA_anti-codon	PF01336.25	gi|410670995|ref|YP_006923366.1|	-	1.1e-23	83.0	8.0	2.3e-08	33.9	0.3	3.3	3	0	0	3	3	3	3	OB-fold	nucleic	acid	binding	domain
CDC24_OB3	PF17244.2	gi|410670995|ref|YP_006923366.1|	-	1.2e-14	54.6	1.8	5.5e-05	23.0	0.2	3.1	3	0	0	3	3	3	3	Cell	division	control	protein	24,	OB	domain	3
REPA_OB_2	PF16900.5	gi|410670995|ref|YP_006923366.1|	-	3.5e-08	33.2	1.8	0.21	11.6	0.2	3.4	3	0	0	3	3	3	3	Replication	protein	A	OB	domain
UvrB_inter	PF17757.1	gi|410670995|ref|YP_006923366.1|	-	0.00027	21.0	0.7	1.2	9.4	0.0	4.4	4	1	0	4	4	4	1	UvrB	interaction	domain
DUF4082	PF13313.6	gi|410670995|ref|YP_006923366.1|	-	0.0022	18.0	0.2	1.4	9.0	0.0	2.9	3	0	0	3	3	3	2	Domain	of	unknown	function	(DUF4082)
DUF3127	PF11325.8	gi|410670995|ref|YP_006923366.1|	-	0.02	15.1	0.4	2.7	8.3	0.1	3.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF3127)
Rep_fac-A_C	PF08646.10	gi|410670995|ref|YP_006923366.1|	-	0.026	14.3	0.2	13	5.5	0.0	3.0	3	0	0	3	3	3	0	Replication	factor-A	C	terminal	domain
VWA_3_C	PF18571.1	gi|410670995|ref|YP_006923366.1|	-	0.09	12.7	0.2	1.5	8.7	0.0	3.0	3	0	0	3	3	3	0	von	Willebrand	factor	type	A	C-terminal	domain
PTS_2-RNA	PF01885.16	gi|410670996|ref|YP_006923367.1|	-	2e-26	93.1	0.0	2.4e-26	92.9	0.0	1.0	1	0	0	1	1	1	1	RNA	2'-phosphotransferase,	Tpt1	/	KptA	family
RTC	PF01137.21	gi|410670997|ref|YP_006923368.1|	-	1.9e-77	259.4	0.0	2.2e-77	259.2	0.0	1.0	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase
RTC_insert	PF05189.13	gi|410670997|ref|YP_006923368.1|	-	9.4e-14	51.8	0.1	1.7e-13	51.0	0.1	1.4	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase	(RTC),	insert	domain
Pyr_redox_2	PF07992.14	gi|410670998|ref|YP_006923369.1|	-	1.7e-49	168.6	0.3	2.1e-49	168.3	0.3	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|410670998|ref|YP_006923369.1|	-	3.1e-21	75.7	0.5	1.4e-16	60.8	0.0	3.2	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|410670998|ref|YP_006923369.1|	-	1.7e-12	47.5	0.0	4.6e-12	46.2	0.0	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.6	gi|410670998|ref|YP_006923369.1|	-	4.1e-11	42.7	0.0	1.6e-06	27.6	0.0	2.3	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|410670998|ref|YP_006923369.1|	-	2.7e-09	37.1	6.9	0.014	15.0	0.2	4.3	3	1	1	4	4	4	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|410670998|ref|YP_006923369.1|	-	5.5e-09	35.2	1.1	0.095	11.4	0.1	4.1	4	0	0	4	4	4	3	HI0933-like	protein
K_oxygenase	PF13434.6	gi|410670998|ref|YP_006923369.1|	-	5.7e-09	35.6	0.0	3e-07	29.9	0.0	2.1	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_8	PF13450.6	gi|410670998|ref|YP_006923369.1|	-	6.6e-08	32.7	0.7	0.003	17.8	0.2	2.7	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|410670998|ref|YP_006923369.1|	-	1.4e-07	31.0	2.9	0.04	13.0	0.0	3.3	3	0	0	3	3	3	3	FAD	binding	domain
ApbA	PF02558.16	gi|410670998|ref|YP_006923369.1|	-	8.5e-06	25.5	0.1	0.15	11.7	0.0	2.5	2	0	0	2	2	2	2	Ketopantoate	reductase	PanE/ApbA
GIDA	PF01134.22	gi|410670998|ref|YP_006923369.1|	-	5.5e-05	22.4	0.8	0.02	14.0	0.0	3.2	3	0	0	3	3	3	1	Glucose	inhibited	division	protein	A
3HCDH_N	PF02737.18	gi|410670998|ref|YP_006923369.1|	-	0.00016	21.6	0.1	0.0069	16.3	0.0	2.3	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|410670998|ref|YP_006923369.1|	-	0.00024	21.1	0.0	0.56	10.2	0.0	2.3	2	0	0	2	2	2	2	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
2-Hacid_dh_C	PF02826.19	gi|410670998|ref|YP_006923369.1|	-	0.00025	20.5	0.1	0.24	10.7	0.0	2.7	2	1	1	3	3	3	2	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|410670998|ref|YP_006923369.1|	-	0.00077	20.0	0.3	1.2	9.8	0.0	3.1	3	0	0	3	3	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_7	PF13241.6	gi|410670998|ref|YP_006923369.1|	-	0.00097	19.6	0.2	0.35	11.3	0.0	2.7	2	1	0	2	2	2	1	Putative	NAD(P)-binding
FAD_binding_3	PF01494.19	gi|410670998|ref|YP_006923369.1|	-	0.0019	17.5	0.2	0.032	13.5	0.1	2.2	2	0	0	2	2	2	1	FAD	binding	domain
Lycopene_cycl	PF05834.12	gi|410670998|ref|YP_006923369.1|	-	0.0023	17.1	1.0	1.7	7.6	0.2	2.7	3	0	0	3	3	3	2	Lycopene	cyclase	protein
TrkA_N	PF02254.18	gi|410670998|ref|YP_006923369.1|	-	0.0028	17.9	0.4	1.3	9.3	0.0	3.0	2	1	1	3	3	3	1	TrkA-N	domain
Sacchrp_dh_NADP	PF03435.18	gi|410670998|ref|YP_006923369.1|	-	0.0038	17.5	0.8	0.24	11.7	0.1	2.5	2	0	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
Rossmann-like	PF10727.9	gi|410670998|ref|YP_006923369.1|	-	0.0043	16.9	0.2	0.32	10.9	0.0	2.7	2	0	0	2	2	2	1	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|410670998|ref|YP_006923369.1|	-	0.012	15.0	2.4	0.54	9.6	0.4	2.9	3	0	0	3	3	3	0	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|410670998|ref|YP_006923369.1|	-	0.059	12.6	0.4	4.9	6.3	0.0	2.4	2	0	0	2	2	2	0	Thi4	family
NAD_binding_9	PF13454.6	gi|410670998|ref|YP_006923369.1|	-	0.068	13.2	3.7	9.7	6.2	0.0	3.2	3	1	0	3	3	3	0	FAD-NAD(P)-binding
NAD_binding_2	PF03446.15	gi|410670998|ref|YP_006923369.1|	-	0.076	13.2	0.0	1.1	9.4	0.0	2.3	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Trp_halogenase	PF04820.14	gi|410670998|ref|YP_006923369.1|	-	0.09	11.6	0.5	0.75	8.6	0.0	2.4	3	0	0	3	3	3	0	Tryptophan	halogenase
UDPG_MGDP_dh_N	PF03721.14	gi|410670998|ref|YP_006923369.1|	-	0.098	12.2	0.3	4.2	6.9	0.0	2.5	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
PglD_N	PF17836.1	gi|410670998|ref|YP_006923369.1|	-	0.1	13.2	1.1	0.34	11.6	0.0	2.3	2	0	0	2	2	2	0	PglD	N-terminal	domain
Toprim_4	PF13662.6	gi|410671000|ref|YP_006923371.1|	-	2e-12	47.4	0.3	5.7e-12	46.0	0.3	1.9	1	0	0	1	1	1	1	Toprim	domain
Toprim_2	PF13155.6	gi|410671000|ref|YP_006923371.1|	-	7.7e-08	32.7	0.0	2e-07	31.4	0.0	1.7	1	0	0	1	1	1	1	Toprim-like
Toprim	PF01751.22	gi|410671000|ref|YP_006923371.1|	-	3.3e-05	24.1	0.1	8.8e-05	22.7	0.1	1.7	1	0	0	1	1	1	1	Toprim	domain
DUF2052	PF09747.9	gi|410671000|ref|YP_006923371.1|	-	0.036	14.2	4.0	0.064	13.4	4.0	1.4	1	0	0	1	1	1	0	Coiled-coil	domain	containing	protein	(DUF2052)
Suf	PF05843.14	gi|410671000|ref|YP_006923371.1|	-	0.041	13.9	6.4	0.062	13.3	6.4	1.2	1	0	0	1	1	1	0	Suppressor	of	forked	protein	(Suf)
GREB1	PF15782.5	gi|410671000|ref|YP_006923371.1|	-	1.6	5.8	5.6	2	5.4	5.6	1.0	1	0	0	1	1	1	0	Gene	regulated	by	oestrogen	in	breast	cancer
UPF0058	PF01893.16	gi|410671001|ref|YP_006923372.1|	-	1.5e-33	114.9	1.0	1.6e-33	114.8	1.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
Acetyltransf_1	PF00583.25	gi|410671002|ref|YP_006923373.1|	-	7e-16	58.5	0.4	1e-15	58.0	0.4	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|410671002|ref|YP_006923373.1|	-	2.2e-13	50.4	0.3	3.6e-13	49.7	0.3	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|410671002|ref|YP_006923373.1|	-	5.5e-12	45.7	0.1	6.5e-12	45.5	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|410671002|ref|YP_006923373.1|	-	7.4e-09	35.5	0.0	1.2e-08	34.8	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|410671002|ref|YP_006923373.1|	-	8.1e-05	22.7	0.1	0.00093	19.3	0.1	2.0	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|410671002|ref|YP_006923373.1|	-	0.00023	21.8	0.1	0.00032	21.4	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|410671002|ref|YP_006923373.1|	-	0.0046	17.1	0.0	0.0078	16.3	0.0	1.3	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_4	PF13420.7	gi|410671002|ref|YP_006923373.1|	-	0.011	15.9	0.1	0.017	15.3	0.1	1.3	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
PanZ	PF12568.8	gi|410671002|ref|YP_006923373.1|	-	0.11	12.3	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain,	PanZ
Acetyltransf_8	PF13523.6	gi|410671002|ref|YP_006923373.1|	-	0.2	11.3	0.0	0.55	9.9	0.0	1.7	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DUF5591	PF17884.1	gi|410671003|ref|YP_006923374.1|	-	1.1e-60	203.9	0.0	2e-60	203.1	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5591)
TGT	PF01702.18	gi|410671003|ref|YP_006923374.1|	-	1.9e-18	66.8	0.2	7.8e-18	64.7	0.1	1.8	2	0	0	2	2	2	1	Queuine	tRNA-ribosyltransferase
PUA	PF01472.20	gi|410671003|ref|YP_006923374.1|	-	5.2e-13	48.8	0.0	1.1e-12	47.7	0.0	1.6	1	0	0	1	1	1	1	PUA	domain
TGT_C2	PF14810.6	gi|410671003|ref|YP_006923374.1|	-	9.8e-13	48.0	0.0	2.2e-12	46.9	0.0	1.6	1	0	0	1	1	1	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
FAD-oxidase_C	PF02913.19	gi|410671004|ref|YP_006923375.1|	-	2.5e-56	191.1	0.0	3.2e-56	190.8	0.0	1.1	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|410671004|ref|YP_006923375.1|	-	7e-44	148.9	0.9	9.1e-44	148.6	0.2	1.6	2	0	0	2	2	2	1	FAD	binding	domain
CCG	PF02754.16	gi|410671005|ref|YP_006923376.1|	-	1.2e-30	105.6	1.2	2e-15	56.7	0.0	2.6	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4_8	PF13183.6	gi|410671005|ref|YP_006923376.1|	-	5.3e-10	39.6	3.2	5.3e-10	39.6	3.2	2.5	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410671005|ref|YP_006923376.1|	-	2.2e-08	34.5	3.0	2.2e-08	34.5	3.0	2.6	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|410671005|ref|YP_006923376.1|	-	4.8e-08	33.5	4.5	4.8e-08	33.5	4.5	2.2	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410671005|ref|YP_006923376.1|	-	4.5e-06	26.7	10.6	4.8e-06	26.6	6.8	3.0	3	1	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410671005|ref|YP_006923376.1|	-	5.8e-06	26.3	8.0	5.8e-06	26.3	8.0	3.0	3	1	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|410671005|ref|YP_006923376.1|	-	0.00015	21.4	22.1	0.0016	18.2	2.0	3.0	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|410671005|ref|YP_006923376.1|	-	0.0024	17.9	13.9	0.0035	17.4	4.4	3.6	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|410671005|ref|YP_006923376.1|	-	0.0025	18.7	15.9	0.018	15.9	12.5	3.3	2	1	1	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.7	gi|410671005|ref|YP_006923376.1|	-	0.0056	17.1	1.4	0.0056	17.1	1.4	4.0	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410671005|ref|YP_006923376.1|	-	0.013	15.6	15.4	0.089	12.9	1.8	3.6	4	0	0	4	4	4	0	4Fe-4S	dicluster	domain
zinc_ribbon_5	PF13719.6	gi|410671005|ref|YP_006923376.1|	-	0.11	12.3	13.1	1.4	8.7	0.5	4.8	5	1	0	5	5	4	0	zinc-ribbon	domain
Fer4_18	PF13746.6	gi|410671005|ref|YP_006923376.1|	-	0.11	12.7	6.6	4	7.7	0.1	2.8	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|410671005|ref|YP_006923376.1|	-	0.24	12.0	10.3	1.4	9.5	1.2	2.8	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
CheB_methylest	PF01339.17	gi|410671007|ref|YP_006923378.1|	-	1.8e-55	187.2	0.0	4.4e-55	186.0	0.0	1.7	1	0	0	1	1	1	1	CheB	methylesterase
CheR	PF01739.18	gi|410671007|ref|YP_006923378.1|	-	4.1e-55	186.3	0.0	8.5e-55	185.3	0.0	1.6	1	0	0	1	1	1	1	CheR	methyltransferase,	SAM	binding	domain
PAS_10	PF13596.6	gi|410671007|ref|YP_006923378.1|	-	4.4e-20	72.3	0.1	7.3e-19	68.3	0.1	2.8	2	0	0	2	2	2	1	PAS	domain
PAS	PF00989.25	gi|410671007|ref|YP_006923378.1|	-	5.6e-14	52.1	0.0	7.1e-11	42.1	0.0	3.5	3	0	0	3	3	3	1	PAS	fold
CheR_N	PF03705.15	gi|410671007|ref|YP_006923378.1|	-	1.1e-12	47.4	0.6	2.4e-12	46.4	0.6	1.6	1	0	0	1	1	1	1	CheR	methyltransferase,	all-alpha	domain
PAS_9	PF13426.7	gi|410671007|ref|YP_006923378.1|	-	3.6e-07	30.4	0.1	5.6e-06	26.6	0.0	2.9	2	0	0	2	2	2	1	PAS	domain
PAS_4	PF08448.10	gi|410671007|ref|YP_006923378.1|	-	7.2e-06	26.2	0.0	0.0089	16.3	0.0	3.5	3	0	0	3	3	3	1	PAS	fold
PAS_3	PF08447.12	gi|410671007|ref|YP_006923378.1|	-	9e-06	25.9	0.0	2.9e-05	24.3	0.0	1.9	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|410671007|ref|YP_006923378.1|	-	2e-05	24.5	0.0	0.00015	21.7	0.0	2.3	2	0	0	2	2	2	1	PAS	domain
HAUS-augmin3	PF14932.6	gi|410671007|ref|YP_006923378.1|	-	5.3e-05	22.9	9.9	9.8e-05	22.1	9.9	1.3	1	0	0	1	1	1	1	HAUS	augmin-like	complex	subunit	3
Fez1	PF06818.15	gi|410671007|ref|YP_006923378.1|	-	0.00012	22.6	5.7	0.00024	21.7	5.7	1.4	1	0	0	1	1	1	1	Fez1
PAS_7	PF12860.7	gi|410671007|ref|YP_006923378.1|	-	0.00032	20.8	1.5	0.019	15.1	0.0	3.5	3	1	0	3	3	3	1	PAS	fold
Golgin_A5	PF09787.9	gi|410671007|ref|YP_006923378.1|	-	0.0009	18.8	10.8	0.0018	17.8	10.8	1.4	1	0	0	1	1	1	1	Golgin	subfamily	A	member	5
Filament	PF00038.21	gi|410671007|ref|YP_006923378.1|	-	0.0029	17.2	12.0	0.0054	16.4	12.0	1.3	1	0	0	1	1	1	1	Intermediate	filament	protein
HMMR_N	PF15905.5	gi|410671007|ref|YP_006923378.1|	-	0.003	17.1	14.2	0.0059	16.1	14.2	1.4	1	0	0	1	1	1	1	Hyaluronan	mediated	motility	receptor	N-terminal
CENP-F_leu_zip	PF10473.9	gi|410671007|ref|YP_006923378.1|	-	0.0061	16.6	16.0	0.038	14.0	16.7	2.0	2	0	0	2	2	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
APG17	PF04108.12	gi|410671007|ref|YP_006923378.1|	-	0.0089	15.2	7.0	0.018	14.1	7.0	1.5	1	0	0	1	1	1	1	Autophagy	protein	Apg17
UPF0242	PF06785.11	gi|410671007|ref|YP_006923378.1|	-	0.0099	16.0	12.4	0.0099	16.0	12.4	1.8	2	0	0	2	2	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF4527	PF15030.6	gi|410671007|ref|YP_006923378.1|	-	0.015	14.8	4.1	0.031	13.7	4.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4527)
Spc7	PF08317.11	gi|410671007|ref|YP_006923378.1|	-	0.018	13.9	20.0	0.024	13.5	11.7	2.3	1	1	1	2	2	2	0	Spc7	kinetochore	protein
Exonuc_VII_L	PF02601.15	gi|410671007|ref|YP_006923378.1|	-	0.025	14.1	6.4	0.011	15.4	3.8	1.7	2	0	0	2	2	1	0	Exonuclease	VII,	large	subunit
Mod_r	PF07200.13	gi|410671007|ref|YP_006923378.1|	-	0.045	13.8	12.7	0.13	12.4	12.7	1.7	1	0	0	1	1	1	0	Modifier	of	rudimentary	(Mod(r))	protein
ATG16	PF08614.11	gi|410671007|ref|YP_006923378.1|	-	0.055	13.7	14.9	0.12	12.6	14.9	1.5	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
FapA	PF03961.13	gi|410671007|ref|YP_006923378.1|	-	0.065	11.8	7.1	0.13	10.8	7.1	1.4	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
IFT57	PF10498.9	gi|410671007|ref|YP_006923378.1|	-	0.088	11.8	14.1	0.16	11.0	14.1	1.3	1	0	0	1	1	1	0	Intra-flagellar	transport	protein	57
Prominin	PF05478.11	gi|410671007|ref|YP_006923378.1|	-	0.092	10.7	7.5	0.15	10.0	7.5	1.2	1	0	0	1	1	1	0	Prominin
Peptidase_S64	PF08192.11	gi|410671007|ref|YP_006923378.1|	-	0.11	11.0	4.4	0.16	10.4	4.4	1.2	1	0	0	1	1	1	0	Peptidase	family	S64
Med30	PF11315.8	gi|410671007|ref|YP_006923378.1|	-	0.13	12.4	6.6	0.51	10.5	6.6	2.0	1	0	0	1	1	1	0	Mediator	complex	subunit	30
OmpH	PF03938.14	gi|410671007|ref|YP_006923378.1|	-	0.15	12.4	9.8	0.61	10.4	9.8	2.0	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Atg14	PF10186.9	gi|410671007|ref|YP_006923378.1|	-	0.21	10.6	7.8	0.38	9.8	7.8	1.3	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
HAP1_N	PF04849.13	gi|410671007|ref|YP_006923378.1|	-	0.22	10.7	17.2	0.42	9.8	17.2	1.4	1	0	0	1	1	1	0	HAP1	N-terminal	conserved	region
APG6_N	PF17675.1	gi|410671007|ref|YP_006923378.1|	-	0.24	11.9	17.8	0.75	10.3	17.8	1.8	1	0	0	1	1	1	0	Apg6	coiled-coil	region
FAM76	PF16046.5	gi|410671007|ref|YP_006923378.1|	-	0.36	10.1	7.3	0.59	9.4	7.3	1.3	1	0	0	1	1	1	0	FAM76	protein
Jnk-SapK_ap_N	PF09744.9	gi|410671007|ref|YP_006923378.1|	-	0.41	10.9	14.9	0.99	9.6	14.9	1.6	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
TMPIT	PF07851.13	gi|410671007|ref|YP_006923378.1|	-	0.46	9.7	8.5	0.87	8.8	8.5	1.3	1	0	0	1	1	1	0	TMPIT-like	protein
DASH_Duo1	PF08651.10	gi|410671007|ref|YP_006923378.1|	-	0.49	10.2	14.1	2	8.2	4.4	3.5	2	1	1	3	3	3	0	DASH	complex	subunit	Duo1
DUF4407	PF14362.6	gi|410671007|ref|YP_006923378.1|	-	0.58	9.5	4.3	1.3	8.3	4.3	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
CorA	PF01544.18	gi|410671007|ref|YP_006923378.1|	-	0.65	9.3	6.8	1.3	8.3	6.8	1.4	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
PDDEXK_6	PF04720.12	gi|410671007|ref|YP_006923378.1|	-	0.72	9.8	4.0	1.5	8.7	4.0	1.5	1	0	0	1	1	1	0	PDDEXK-like	family	of	unknown	function
DUF4471	PF14740.6	gi|410671007|ref|YP_006923378.1|	-	0.73	9.0	5.5	1.3	8.1	5.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4471)
TPR_MLP1_2	PF07926.12	gi|410671007|ref|YP_006923378.1|	-	0.83	9.7	20.5	2.5	8.2	20.5	1.8	1	0	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
Lebercilin	PF15619.6	gi|410671007|ref|YP_006923378.1|	-	0.97	9.1	17.6	1.7	8.3	13.8	2.6	2	1	0	2	2	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
Dzip-like_N	PF13815.6	gi|410671007|ref|YP_006923378.1|	-	1.3	9.0	6.8	3.7	7.5	6.8	1.8	1	0	0	1	1	1	0	Iguana/Dzip1-like	DAZ-interacting	protein	N-terminal
DUF1664	PF07889.12	gi|410671007|ref|YP_006923378.1|	-	1.5	8.9	11.2	4.6	7.3	0.8	3.2	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
FAS_I_H	PF18314.1	gi|410671007|ref|YP_006923378.1|	-	1.6	8.3	7.8	1.9	8.1	0.1	2.6	2	0	0	2	2	2	0	Fatty	acid	synthase	type	I	helical	domain
DUF4200	PF13863.6	gi|410671007|ref|YP_006923378.1|	-	2	8.9	15.1	14	6.1	15.1	2.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4200)
HemX	PF04375.14	gi|410671007|ref|YP_006923378.1|	-	2	7.6	12.1	3.4	6.9	12.1	1.3	1	0	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
THOC7	PF05615.13	gi|410671007|ref|YP_006923378.1|	-	2.4	8.4	15.3	1.4	9.2	12.8	1.8	2	0	0	2	2	1	0	Tho	complex	subunit	7
Lectin_N	PF03954.14	gi|410671007|ref|YP_006923378.1|	-	2.5	7.9	12.3	3.7	7.3	10.6	2.2	2	1	0	2	2	1	0	Hepatic	lectin,	N-terminal	domain
DUF3450	PF11932.8	gi|410671007|ref|YP_006923378.1|	-	2.6	7.3	11.9	8.8	5.5	11.9	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
KxDL	PF10241.9	gi|410671007|ref|YP_006923378.1|	-	2.6	8.4	9.4	5.9	7.2	0.5	2.9	1	1	1	2	2	2	0	Uncharacterized	conserved	protein
Laminin_II	PF06009.12	gi|410671007|ref|YP_006923378.1|	-	2.9	7.9	10.9	8.6	6.4	10.9	1.8	1	0	0	1	1	1	0	Laminin	Domain	II
DUF724	PF05266.14	gi|410671007|ref|YP_006923378.1|	-	3.1	7.6	12.1	7.3	6.4	12.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
AAA_23	PF13476.6	gi|410671007|ref|YP_006923378.1|	-	3.5	8.1	8.6	7.4	7.0	7.3	2.2	2	0	0	2	2	1	0	AAA	domain
DUF2203	PF09969.9	gi|410671007|ref|YP_006923378.1|	-	4.4	8.1	5.8	51	4.6	6.3	2.6	2	1	0	2	2	1	0	Uncharacterized	conserved	protein	(DUF2203)
DUF4140	PF13600.6	gi|410671007|ref|YP_006923378.1|	-	5	7.6	9.3	4.1e+02	1.5	9.3	2.7	1	1	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
bZIP_1	PF00170.21	gi|410671007|ref|YP_006923378.1|	-	5	7.3	17.1	10	6.3	3.7	3.2	1	1	1	2	2	2	0	bZIP	transcription	factor
COG2	PF06148.11	gi|410671007|ref|YP_006923378.1|	-	5.3	7.1	10.0	20	5.3	10.0	1.9	1	1	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
UPF0449	PF15136.6	gi|410671007|ref|YP_006923378.1|	-	6.6	7.3	17.5	7.6	7.1	5.7	3.0	2	1	1	3	3	2	0	Uncharacterised	protein	family	UPF0449
WXG100	PF06013.12	gi|410671007|ref|YP_006923378.1|	-	7.6	6.8	8.0	5.3	7.3	1.8	3.0	1	1	2	3	3	3	0	Proteins	of	100	residues	with	WXG
DDE_Tnp_IS1	PF03400.13	gi|410671008|ref|YP_006923379.1|	-	1.2e-08	35.4	0.1	1.3e-08	35.3	0.1	1.0	1	0	0	1	1	1	1	IS1	transposase
TERT_thumb	PF17984.1	gi|410671008|ref|YP_006923379.1|	-	0.022	14.6	0.1	0.022	14.6	0.1	1.1	1	0	0	1	1	1	0	Telomerase	reverse	transcriptase	thumb	DNA	binding	domain
EPO_TPO	PF00758.18	gi|410671008|ref|YP_006923379.1|	-	0.068	13.2	0.0	0.084	12.9	0.0	1.1	1	0	0	1	1	1	0	Erythropoietin/thrombopoietin
Desulfoferrod_N	PF06397.12	gi|410671009|ref|YP_006923380.1|	-	0.013	15.1	1.5	0.19	11.4	0.1	2.1	2	0	0	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
DUF1724	PF08350.10	gi|410671010|ref|YP_006923381.1|	-	7.6e-20	70.8	0.1	1.8e-19	69.6	0.1	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
TFIID_NTD2	PF04494.15	gi|410671010|ref|YP_006923381.1|	-	0.0058	16.9	0.7	0.015	15.5	0.7	1.7	1	0	0	1	1	1	1	WD40	associated	region	in	TFIID	subunit,	NTD2	domain
HTH_45	PF14947.6	gi|410671010|ref|YP_006923381.1|	-	0.021	14.8	0.3	0.047	13.7	0.3	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix
PGF-CTERM	PF18204.1	gi|410671011|ref|YP_006923382.1|	-	0.082	12.9	5.7	0.13	12.3	5.7	1.3	1	0	0	1	1	1	0	PGF-CTERM	motif
DUF4513	PF14983.6	gi|410671011|ref|YP_006923382.1|	-	0.18	11.9	0.0	5.3	7.1	0.0	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4513)
Radical_SAM_N	PF08497.10	gi|410671012|ref|YP_006923383.1|	-	1.2e-131	438.5	0.0	1.6e-131	438.0	0.0	1.2	1	0	0	1	1	1	1	Radical	SAM	N-terminal
DUF3362	PF11842.8	gi|410671012|ref|YP_006923383.1|	-	4.5e-27	95.2	0.0	7.1e-27	94.6	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3362)
Radical_SAM	PF04055.21	gi|410671012|ref|YP_006923383.1|	-	5.4e-14	52.9	0.1	1.7e-13	51.3	0.1	1.8	2	0	0	2	2	2	1	Radical	SAM	superfamily
B12-binding	PF02310.19	gi|410671012|ref|YP_006923383.1|	-	7.5e-05	22.8	0.0	0.29	11.2	0.0	2.9	3	0	0	3	3	3	2	B12	binding	domain
Lactamase_B	PF00753.27	gi|410671013|ref|YP_006923384.1|	-	1e-32	113.8	0.4	1.1e-32	113.6	0.4	1.0	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|410671013|ref|YP_006923384.1|	-	2e-07	30.7	0.0	2.8e-07	30.3	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|410671013|ref|YP_006923384.1|	-	0.0025	17.3	0.1	0.0045	16.4	0.1	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
TatD_DNase	PF01026.21	gi|410671014|ref|YP_006923385.1|	-	1.4e-62	211.4	0.0	1.6e-62	211.2	0.0	1.0	1	0	0	1	1	1	1	TatD	related	DNase
Amidohydro_1	PF01979.20	gi|410671014|ref|YP_006923385.1|	-	0.0002	20.8	0.1	0.00029	20.3	0.1	1.2	1	0	0	1	1	1	1	Amidohydrolase	family
AP_endonuc_2	PF01261.24	gi|410671014|ref|YP_006923385.1|	-	0.028	13.9	0.1	0.32	10.4	0.0	2.4	1	1	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
CUE	PF02845.16	gi|410671014|ref|YP_006923385.1|	-	0.16	11.7	0.0	0.34	10.7	0.0	1.6	1	0	0	1	1	1	0	CUE	domain
HMGL-like	PF00682.19	gi|410671015|ref|YP_006923386.1|	-	9.8e-58	195.8	5.0	1.8e-57	194.9	5.0	1.4	1	0	0	1	1	1	1	HMGL-like
LeuA_dimer	PF08502.10	gi|410671015|ref|YP_006923386.1|	-	2.4e-30	105.2	1.7	4.5e-30	104.3	1.7	1.5	1	0	0	1	1	1	1	LeuA	allosteric	(dimerisation)	domain
Pyr_redox_2	PF07992.14	gi|410671016|ref|YP_006923387.1|	-	1.2e-38	133.1	0.0	1.5e-38	132.7	0.0	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|410671016|ref|YP_006923387.1|	-	3e-21	75.7	0.1	6.4e-21	74.7	0.1	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|410671016|ref|YP_006923387.1|	-	1.5e-13	51.1	0.0	6.8e-13	49.0	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|410671016|ref|YP_006923387.1|	-	1.3e-06	27.9	0.0	2e-06	27.3	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|410671016|ref|YP_006923387.1|	-	2.5e-05	23.6	0.0	0.0067	15.6	0.0	2.6	2	1	1	3	3	3	2	L-lysine	6-monooxygenase	(NADPH-requiring)
3HCDH_N	PF02737.18	gi|410671016|ref|YP_006923387.1|	-	0.15	12.0	0.1	1.1	9.1	0.0	2.2	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
F420_ligase	PF01996.16	gi|410671017|ref|YP_006923388.1|	-	1.3e-63	214.6	0.0	1.5e-63	214.4	0.0	1.0	1	0	0	1	1	1	1	F420-0:Gamma-glutamyl	ligase
RBD	PF02196.15	gi|410671017|ref|YP_006923388.1|	-	0.12	12.4	0.0	0.34	11.0	0.0	1.7	2	0	0	2	2	2	0	Raf-like	Ras-binding	domain
ThiC_Rad_SAM	PF01964.18	gi|410671018|ref|YP_006923389.1|	-	1.3e-143	478.7	0.0	1.5e-143	478.6	0.0	1.0	1	0	0	1	1	1	1	Radical	SAM	ThiC	family
Methyltransf_18	PF12847.7	gi|410671018|ref|YP_006923389.1|	-	0.0038	17.2	1.0	3.8	7.4	0.0	3.1	2	1	0	3	3	3	2	Methyltransferase	domain
AIRC	PF00731.20	gi|410671018|ref|YP_006923389.1|	-	0.011	15.3	0.3	1.8	8.1	0.0	2.3	2	0	0	2	2	2	0	AIR	carboxylase
GT-D	PF08759.11	gi|410671018|ref|YP_006923389.1|	-	0.082	12.6	0.0	0.13	12.0	0.0	1.2	1	0	0	1	1	1	0	Glycosyltransferase	GT-D	fold
MTHFR	PF02219.17	gi|410671019|ref|YP_006923390.1|	-	1.8e-35	122.7	0.0	2.1e-35	122.5	0.0	1.0	1	0	0	1	1	1	1	Methylenetetrahydrofolate	reductase
RalF_SCD	PF18248.1	gi|410671019|ref|YP_006923390.1|	-	0.073	13.0	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	RalF	C-terminal	Sec-7	capping	domain
Glyco_transf_28	PF03033.20	gi|410671019|ref|YP_006923390.1|	-	0.13	12.3	0.0	2.6	8.1	0.0	2.2	1	1	0	1	1	1	0	Glycosyltransferase	family	28	N-terminal	domain
Hydrolase_like	PF13242.6	gi|410671019|ref|YP_006923390.1|	-	0.15	12.1	0.0	0.26	11.4	0.0	1.4	1	0	0	1	1	1	0	HAD-hyrolase-like
MTHFR_C	PF12225.8	gi|410671020|ref|YP_006923391.1|	-	9.8e-33	111.7	0.9	9.8e-33	111.7	0.9	1.6	2	0	0	2	2	2	1	Methylene-tetrahydrofolate	reductase	C	terminal
Fer4_6	PF12837.7	gi|410671020|ref|YP_006923391.1|	-	2	8.6	8.8	2.6	8.3	3.8	3.3	2	1	0	2	2	2	0	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|410671020|ref|YP_006923391.1|	-	5.5	7.0	9.9	0.66	9.9	0.9	3.2	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Pterin_bind	PF00809.22	gi|410671021|ref|YP_006923392.1|	-	5.9e-55	186.6	0.1	8.5e-55	186.1	0.1	1.2	1	0	0	1	1	1	1	Pterin	binding	enzyme
THF_DHG_CYH_C	PF02882.19	gi|410671022|ref|YP_006923393.1|	-	6.9e-65	217.2	3.7	1.1e-64	216.6	3.7	1.3	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
THF_DHG_CYH	PF00763.23	gi|410671022|ref|YP_006923393.1|	-	4.5e-37	126.9	0.0	6.5e-37	126.3	0.0	1.2	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
AdoHcyase_NAD	PF00670.21	gi|410671022|ref|YP_006923393.1|	-	0.0034	17.5	1.6	0.22	11.6	1.6	2.2	1	1	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
PTS_IIB	PF02302.17	gi|410671022|ref|YP_006923393.1|	-	0.25	12.1	1.9	0.84	10.4	0.2	2.6	2	2	2	4	4	4	0	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
SHMT	PF00464.19	gi|410671023|ref|YP_006923394.1|	-	6e-170	565.1	1.6	7e-170	564.9	1.6	1.0	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Beta_elim_lyase	PF01212.21	gi|410671023|ref|YP_006923394.1|	-	9.1e-06	25.2	0.5	1.4e-05	24.5	0.5	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.17	gi|410671023|ref|YP_006923394.1|	-	0.0017	17.7	0.4	0.0023	17.3	0.4	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
OKR_DC_1	PF01276.20	gi|410671023|ref|YP_006923394.1|	-	0.0029	16.4	0.1	0.0079	15.0	0.1	1.6	1	1	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	major	domain
Aminotran_5	PF00266.19	gi|410671023|ref|YP_006923394.1|	-	0.0048	15.9	0.0	0.0071	15.3	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
Formyl_trans_N	PF00551.19	gi|410671024|ref|YP_006923395.1|	-	6.2e-56	189.0	0.0	7.1e-56	188.8	0.0	1.0	1	0	0	1	1	1	1	Formyl	transferase
HTH_3	PF01381.22	gi|410671025|ref|YP_006923396.1|	-	4.9e-08	32.9	1.9	5.5e-08	32.7	0.2	2.0	2	0	0	2	2	2	1	Helix-turn-helix
HTH_31	PF13560.6	gi|410671025|ref|YP_006923396.1|	-	3.5e-07	30.5	0.1	6.9e-07	29.5	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|410671025|ref|YP_006923396.1|	-	4.9e-07	29.7	0.1	1.5e-06	28.2	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|410671025|ref|YP_006923396.1|	-	0.00012	22.0	0.2	0.00072	19.4	0.1	2.4	4	0	0	4	4	4	1	HTH	domain
HTH_IclR	PF09339.10	gi|410671025|ref|YP_006923396.1|	-	0.026	14.3	0.1	4.5	7.2	0.1	2.6	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_36	PF13730.6	gi|410671025|ref|YP_006923396.1|	-	0.03	14.3	0.0	0.079	12.9	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|410671025|ref|YP_006923396.1|	-	0.043	13.7	0.0	0.13	12.2	0.0	1.8	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
GFRP	PF06399.13	gi|410671025|ref|YP_006923396.1|	-	0.045	13.6	0.0	0.12	12.3	0.0	1.7	1	0	0	1	1	1	0	GTP	cyclohydrolase	I	feedback	regulatory	protein	(GFRP)
HTH_25	PF13413.6	gi|410671025|ref|YP_006923396.1|	-	0.069	13.0	0.0	0.2	11.5	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF1743	PF08489.11	gi|410671026|ref|YP_006923397.1|	-	9.8e-39	132.0	0.0	1.5e-38	131.4	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1743)
tRNA_anti-codon	PF01336.25	gi|410671026|ref|YP_006923397.1|	-	0.00073	19.5	0.0	0.0013	18.7	0.0	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA_anti_2	PF13742.6	gi|410671026|ref|YP_006923397.1|	-	0.0013	18.9	0.0	0.0026	17.9	0.0	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
Zn_ribbon_SprT	PF17283.2	gi|410671026|ref|YP_006923397.1|	-	0.0067	16.3	1.1	0.014	15.2	1.1	1.6	1	0	0	1	1	1	1	SprT-like	zinc	ribbon	domain
DZR	PF12773.7	gi|410671026|ref|YP_006923397.1|	-	0.018	15.0	4.5	0.053	13.6	1.0	2.9	3	0	0	3	3	3	0	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|410671026|ref|YP_006923397.1|	-	0.065	13.4	0.4	12	6.1	0.0	2.9	2	0	0	2	2	2	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|410671026|ref|YP_006923397.1|	-	0.081	12.9	2.1	0.22	11.5	2.1	1.7	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc-ribbons_6	PF07191.12	gi|410671026|ref|YP_006923397.1|	-	0.11	12.5	2.2	0.19	11.7	0.6	2.2	2	0	0	2	2	2	0	zinc-ribbons
HypA	PF01155.19	gi|410671026|ref|YP_006923397.1|	-	0.13	12.3	0.2	0.13	12.3	0.2	1.8	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn_Tnp_IS1595	PF12760.7	gi|410671026|ref|YP_006923397.1|	-	0.23	11.5	4.5	0.074	13.0	1.4	1.8	2	0	0	2	2	1	0	Transposase	zinc-ribbon	domain
C1_1	PF00130.22	gi|410671026|ref|YP_006923397.1|	-	0.39	10.6	3.0	0.41	10.6	0.7	2.0	2	0	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-NADH-PPase	PF09297.11	gi|410671026|ref|YP_006923397.1|	-	0.48	10.1	4.7	1.3	8.7	4.7	1.8	1	0	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|410671026|ref|YP_006923397.1|	-	1.7	8.2	6.1	0.87	9.1	0.1	3.3	4	0	0	4	4	4	0	zinc-ribbon	domain
NAD_synthase	PF02540.17	gi|410671027|ref|YP_006923398.1|	-	2.6e-83	278.9	0.0	3.2e-83	278.5	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|410671027|ref|YP_006923398.1|	-	2.4e-06	26.6	0.0	2.5e-05	23.3	0.0	2.0	2	0	0	2	2	2	1	tRNA	methyl	transferase
Asn_synthase	PF00733.21	gi|410671027|ref|YP_006923398.1|	-	0.096	12.3	0.0	0.14	11.8	0.0	1.2	1	0	0	1	1	1	0	Asparagine	synthase
QueC	PF06508.13	gi|410671027|ref|YP_006923398.1|	-	0.2	11.1	0.0	0.4	10.2	0.0	1.5	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
PIN_6	PF17146.4	gi|410671029|ref|YP_006923400.1|	-	1e-10	41.9	0.3	1.9e-10	41.1	0.3	1.4	1	0	0	1	1	1	1	PIN	domain	of	ribonuclease
PIN_5	PF08745.11	gi|410671029|ref|YP_006923400.1|	-	0.0012	18.3	0.5	0.0017	17.8	0.4	1.4	1	1	0	1	1	1	1	PINc	domain	ribonuclease
PIN_4	PF13638.6	gi|410671029|ref|YP_006923400.1|	-	0.012	16.0	0.1	0.017	15.4	0.1	1.2	1	0	0	1	1	1	0	PIN	domain
zf-C4_Topoisom	PF01396.19	gi|410671029|ref|YP_006923400.1|	-	0.036	13.9	1.0	0.065	13.0	1.0	1.4	1	0	0	1	1	1	0	Topoisomerase	DNA	binding	C4	zinc	finger
DNA_ligase_ZBD	PF03119.16	gi|410671029|ref|YP_006923400.1|	-	0.074	13.1	0.2	0.18	11.9	0.2	1.6	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Rad50_zn_hook	PF04423.14	gi|410671029|ref|YP_006923400.1|	-	0.089	12.6	1.2	0.22	11.4	0.2	2.2	1	1	1	2	2	2	0	Rad50	zinc	hook	motif
zinc-ribbons_6	PF07191.12	gi|410671029|ref|YP_006923400.1|	-	0.094	12.7	0.2	0.15	12.0	0.2	1.3	1	0	0	1	1	1	0	zinc-ribbons
OrfB_Zn_ribbon	PF07282.11	gi|410671029|ref|YP_006923400.1|	-	0.098	12.6	0.4	0.87	9.6	0.1	2.5	3	0	0	3	3	3	0	Putative	transposase	DNA-binding	domain
Prok-RING_1	PF14446.6	gi|410671029|ref|YP_006923400.1|	-	0.11	12.4	0.8	0.25	11.3	0.8	1.6	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
Pribosyltran	PF00156.27	gi|410671030|ref|YP_006923401.1|	-	9e-24	83.8	0.8	1.5e-23	83.1	0.7	1.4	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.6	gi|410671030|ref|YP_006923401.1|	-	8.4e-05	22.1	0.2	0.0046	16.5	0.1	2.1	1	1	1	2	2	2	1	Phosphoribosyl	transferase
UPRTase	PF14681.6	gi|410671030|ref|YP_006923401.1|	-	0.00016	21.2	0.2	0.00023	20.7	0.2	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
GerE	PF00196.19	gi|410671030|ref|YP_006923401.1|	-	0.0014	18.2	0.0	0.0026	17.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_7	PF02796.15	gi|410671030|ref|YP_006923401.1|	-	0.0014	18.7	0.1	0.0034	17.4	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_23	PF13384.6	gi|410671030|ref|YP_006923401.1|	-	0.0077	16.0	0.0	0.028	14.2	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
Sigma70_r4_2	PF08281.12	gi|410671030|ref|YP_006923401.1|	-	0.017	14.8	0.0	0.031	14.0	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_11	PF08279.12	gi|410671030|ref|YP_006923401.1|	-	0.034	14.1	0.2	0.27	11.2	0.1	2.3	2	0	0	2	2	2	0	HTH	domain
HTH_29	PF13551.6	gi|410671030|ref|YP_006923401.1|	-	0.04	13.9	0.0	0.083	12.9	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn	helix
PAX	PF00292.18	gi|410671030|ref|YP_006923401.1|	-	0.065	13.2	0.1	0.55	10.2	0.0	2.2	2	0	0	2	2	2	0	'Paired	box'	domain
Nucleo_LEF-12	PF06256.11	gi|410671030|ref|YP_006923401.1|	-	0.072	12.9	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	Nucleopolyhedrovirus	LEF-12	protein
Fe_dep_repress	PF01325.19	gi|410671030|ref|YP_006923401.1|	-	0.1	12.8	0.1	3.8	7.8	0.0	2.5	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_24	PF13412.6	gi|410671030|ref|YP_006923401.1|	-	0.14	11.8	0.1	0.43	10.2	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|410671030|ref|YP_006923401.1|	-	0.14	12.1	0.3	4.6	7.2	0.0	2.8	2	1	0	2	2	2	0	MarR	family
Terminase_5	PF06056.12	gi|410671030|ref|YP_006923401.1|	-	0.17	11.8	0.0	0.3	11.0	0.0	1.4	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
DnaJ_CXXCXGXG	PF00684.19	gi|410671031|ref|YP_006923402.1|	-	8e-09	35.7	13.2	8e-09	35.7	13.2	2.5	1	1	1	2	2	2	2	DnaJ	central	domain
tRNA_anti-codon	PF01336.25	gi|410671031|ref|YP_006923402.1|	-	3.1e-08	33.5	0.0	7.2e-08	32.3	0.0	1.6	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
S1	PF00575.23	gi|410671031|ref|YP_006923402.1|	-	3e-06	27.5	0.9	3e-06	27.5	0.9	1.9	2	0	0	2	2	2	1	S1	RNA	binding	domain
tRNA_anti_2	PF13742.6	gi|410671031|ref|YP_006923402.1|	-	1.6e-05	25.0	0.0	0.00022	21.4	0.0	2.6	2	0	0	2	2	2	1	OB-fold	nucleic	acid	binding	domain
DHH	PF01368.20	gi|410671031|ref|YP_006923402.1|	-	0.00023	21.3	0.2	0.00062	20.0	0.2	1.7	1	0	0	1	1	1	1	DHH	family
S1_2	PF13509.6	gi|410671031|ref|YP_006923402.1|	-	0.00034	20.6	0.0	0.00072	19.6	0.0	1.6	1	0	0	1	1	1	1	S1	domain
Anti-TRAP	PF15777.5	gi|410671031|ref|YP_006923402.1|	-	0.11	12.5	21.3	0.21	11.6	3.0	3.2	2	1	1	3	3	3	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
zf-CCHC_6	PF15288.6	gi|410671031|ref|YP_006923402.1|	-	0.36	10.7	7.4	0.036	13.9	2.6	1.9	2	0	0	2	2	2	0	Zinc	knuckle
HypA	PF01155.19	gi|410671031|ref|YP_006923402.1|	-	1.8	8.6	22.0	1.8	8.7	1.4	4.3	3	1	1	4	4	4	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-C4pol	PF14260.6	gi|410671031|ref|YP_006923402.1|	-	4.5	7.8	12.4	13	6.4	0.8	2.7	2	0	0	2	2	2	0	C4-type	zinc-finger	of	DNA	polymerase	delta
zf-CHY	PF05495.12	gi|410671031|ref|YP_006923402.1|	-	5.8	7.5	14.9	2.1	8.9	9.4	2.9	2	1	0	2	2	2	0	CHY	zinc	finger
Band_7	PF01145.25	gi|410671032|ref|YP_006923403.1|	-	9.8e-37	126.7	4.4	1.4e-36	126.1	4.4	1.2	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Glyco_hydro_80	PF13647.6	gi|410671032|ref|YP_006923403.1|	-	0.0026	17.3	0.1	0.0033	17.0	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	80	of	chitosanase	A
Band_7_1	PF13421.6	gi|410671032|ref|YP_006923403.1|	-	0.0033	17.2	0.3	0.012	15.3	0.2	2.1	1	1	0	2	2	2	1	SPFH	domain-Band	7	family
Amidohydro_1	PF01979.20	gi|410671032|ref|YP_006923403.1|	-	0.11	11.9	0.3	0.15	11.3	0.3	1.2	1	0	0	1	1	1	0	Amidohydrolase	family
NfeD	PF01957.18	gi|410671033|ref|YP_006923404.1|	-	6.9e-15	55.2	2.3	1.8e-14	53.8	0.1	2.7	3	0	0	3	3	3	1	NfeD-like	C-terminal,	partner-binding
CLP_protease	PF00574.23	gi|410671033|ref|YP_006923404.1|	-	5e-05	23.2	0.1	8.9e-05	22.5	0.1	1.3	1	0	0	1	1	1	1	Clp	protease
PA	PF02225.22	gi|410671033|ref|YP_006923404.1|	-	0.27	11.3	1.5	0.58	10.2	0.1	2.4	3	0	0	3	3	3	0	PA	domain
AIRS_C	PF02769.22	gi|410671034|ref|YP_006923405.1|	-	1.8e-15	57.4	2.3	1.8e-15	57.4	2.3	1.8	2	0	0	2	2	2	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|410671034|ref|YP_006923405.1|	-	3.3e-09	37.3	1.8	1.1e-08	35.6	0.7	2.3	2	0	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
GATase	PF00117.28	gi|410671035|ref|YP_006923406.1|	-	1e-21	77.6	0.0	1.3e-21	77.3	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
SNO	PF01174.19	gi|410671035|ref|YP_006923406.1|	-	8e-08	32.3	0.0	1.9e-07	31.1	0.0	1.5	1	1	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.14	gi|410671035|ref|YP_006923406.1|	-	8.1e-06	25.6	1.3	3.1e-05	23.7	0.1	1.9	2	0	0	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_C26	PF07722.13	gi|410671035|ref|YP_006923406.1|	-	3.8e-05	23.5	0.1	0.00014	21.7	0.1	1.8	1	1	0	1	1	1	1	Peptidase	C26
DJ-1_PfpI	PF01965.24	gi|410671035|ref|YP_006923406.1|	-	0.021	14.7	0.0	0.031	14.1	0.0	1.3	1	0	0	1	1	1	0	DJ-1/PfpI	family
HTH_OrfB_IS605	PF12323.8	gi|410671036|ref|YP_006923407.1|	-	1.8e-14	52.9	0.4	1.8e-14	52.9	0.4	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF772	PF05598.11	gi|410671037|ref|YP_006923408.1|	-	3.9e-22	78.1	0.1	1e-21	76.7	0.0	1.7	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|410671037|ref|YP_006923408.1|	-	1.5e-14	54.2	0.1	2.9e-14	53.2	0.1	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_4	PF13359.6	gi|410671037|ref|YP_006923408.1|	-	0.00025	20.8	0.1	0.00045	19.9	0.1	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1_3	PF13612.6	gi|410671037|ref|YP_006923408.1|	-	0.00048	20.2	0.1	0.001	19.1	0.1	1.6	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|410671037|ref|YP_006923408.1|	-	0.036	14.3	0.2	0.069	13.4	0.2	1.4	1	0	0	1	1	1	0	Transposase	DDE	domain
OrfB_Zn_ribbon	PF07282.11	gi|410671038|ref|YP_006923409.1|	-	1.7e-24	85.5	1.9	8.1e-23	80.1	1.6	2.7	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|410671038|ref|YP_006923409.1|	-	1.5e-19	70.4	0.2	3.3e-19	69.3	0.2	1.6	1	0	0	1	1	1	1	Probable	transposase
Phage_integrase	PF00589.22	gi|410671040|ref|YP_006923411.1|	-	2.6e-17	63.2	0.0	4.7e-17	62.3	0.0	1.3	1	0	0	1	1	1	1	Phage	integrase	family
zf-ribbon_3	PF13248.6	gi|410671040|ref|YP_006923411.1|	-	1.4e-05	24.3	0.5	2.6e-05	23.4	0.5	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|410671040|ref|YP_006923411.1|	-	0.00057	19.9	0.4	0.0011	18.9	0.4	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|410671040|ref|YP_006923411.1|	-	0.0026	17.4	2.1	0.0064	16.2	2.1	1.6	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|410671040|ref|YP_006923411.1|	-	0.0089	16.8	0.6	0.019	15.7	0.6	1.6	1	0	0	1	1	1	1	zinc-ribbon	family
DUF4806	PF16064.5	gi|410671040|ref|YP_006923411.1|	-	0.18	12.1	0.8	8.5	6.7	0.0	2.9	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4806)
Adeno_VII	PF03228.14	gi|410671041|ref|YP_006923412.1|	-	0.0096	16.6	0.2	0.0096	16.6	0.2	1.5	1	1	0	1	1	1	1	Adenoviral	core	protein	VII
UDPG_MGDP_dh_N	PF03721.14	gi|410671044|ref|YP_006923415.1|	-	2e-63	213.4	0.5	2.9e-63	212.8	0.5	1.2	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|410671044|ref|YP_006923415.1|	-	2.6e-37	126.9	0.0	5.1e-37	126.0	0.0	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|410671044|ref|YP_006923415.1|	-	7.6e-27	93.8	0.0	2.6e-26	92.1	0.0	1.9	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
3HCDH_N	PF02737.18	gi|410671044|ref|YP_006923415.1|	-	3.4e-05	23.8	0.0	7.3e-05	22.7	0.0	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|410671044|ref|YP_006923415.1|	-	0.00013	22.0	0.0	0.0003	20.8	0.0	1.7	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
F420_oxidored	PF03807.17	gi|410671044|ref|YP_006923415.1|	-	0.00045	20.8	0.0	0.025	15.2	0.0	3.1	3	1	0	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox	PF00070.27	gi|410671044|ref|YP_006923415.1|	-	0.0019	18.7	0.1	0.0058	17.2	0.1	1.9	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|410671044|ref|YP_006923415.1|	-	0.0027	17.0	0.0	0.0056	16.0	0.0	1.6	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|410671044|ref|YP_006923415.1|	-	0.0071	15.7	0.0	0.068	12.5	0.0	2.3	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|410671044|ref|YP_006923415.1|	-	0.0099	15.5	0.0	0.019	14.6	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
YpmT	PF17431.2	gi|410671044|ref|YP_006923415.1|	-	0.012	15.6	0.0	0.03	14.4	0.0	1.6	1	0	0	1	1	1	0	Uncharacterized	YmpT-like
Pyr_redox_2	PF07992.14	gi|410671044|ref|YP_006923415.1|	-	0.013	14.8	0.0	0.024	13.9	0.0	1.5	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_11	PF14833.6	gi|410671044|ref|YP_006923415.1|	-	0.027	14.7	0.0	0.088	13.1	0.0	1.9	1	1	0	1	1	1	0	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
NAD_binding_2	PF03446.15	gi|410671044|ref|YP_006923415.1|	-	0.031	14.4	0.1	0.32	11.2	0.1	2.3	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
FAD_binding_3	PF01494.19	gi|410671044|ref|YP_006923415.1|	-	0.037	13.3	0.0	0.06	12.6	0.0	1.3	1	0	0	1	1	1	0	FAD	binding	domain
GFO_IDH_MocA	PF01408.22	gi|410671044|ref|YP_006923415.1|	-	0.061	14.2	0.0	0.25	12.2	0.0	2.1	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Rossmann-like	PF10727.9	gi|410671044|ref|YP_006923415.1|	-	0.12	12.2	0.4	0.32	10.9	0.0	1.9	2	0	0	2	2	2	0	Rossmann-like	domain
TrkA_N	PF02254.18	gi|410671044|ref|YP_006923415.1|	-	0.13	12.6	0.0	0.35	11.2	0.0	1.8	1	0	0	1	1	1	0	TrkA-N	domain
NAD_binding_8	PF13450.6	gi|410671044|ref|YP_006923415.1|	-	1.7	9.0	4.3	0.88	9.8	0.2	2.7	3	0	0	3	3	3	0	NAD(P)-binding	Rossmann-like	domain
DUF3427	PF11907.8	gi|410671045|ref|YP_006923416.1|	-	8.2e-80	268.1	12.5	8.2e-80	268.1	12.5	2.2	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF3427)
ResIII	PF04851.15	gi|410671045|ref|YP_006923416.1|	-	1.2e-36	126.3	1.4	1.9e-36	125.6	0.4	2.0	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|410671045|ref|YP_006923416.1|	-	7.9e-14	51.9	0.9	1.2e-10	41.7	0.0	3.8	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
PLDc_2	PF13091.6	gi|410671045|ref|YP_006923416.1|	-	1.3e-10	41.3	0.2	3.3e-10	40.0	0.2	1.7	1	0	0	1	1	1	1	PLD-like	domain
SWI2_SNF2	PF18766.1	gi|410671045|ref|YP_006923416.1|	-	4.3e-09	36.4	0.4	8.6e-09	35.4	0.4	1.4	1	0	0	1	1	1	1	SWI2/SNF2	ATPase
DEAD	PF00270.29	gi|410671045|ref|YP_006923416.1|	-	1.6e-07	31.3	0.0	4.3e-07	29.9	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
BTRD1	PF17660.1	gi|410671045|ref|YP_006923416.1|	-	0.041	13.7	0.0	0.18	11.6	0.0	2.1	1	0	0	1	1	1	0	Bacterial	tandem	repeat	domain	1
SNF2_N	PF00176.23	gi|410671045|ref|YP_006923416.1|	-	0.055	12.2	0.0	0.088	11.5	0.0	1.2	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
PhoH	PF02562.16	gi|410671045|ref|YP_006923416.1|	-	0.15	11.5	0.1	0.47	9.9	0.0	1.8	2	0	0	2	2	2	0	PhoH-like	protein
NUDIX	PF00293.28	gi|410671046|ref|YP_006923417.1|	-	6.8e-16	58.5	0.0	7.8e-16	58.3	0.0	1.0	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_4	PF14815.6	gi|410671046|ref|YP_006923417.1|	-	9.4e-12	44.9	0.0	1.2e-11	44.5	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_2	PF13869.6	gi|410671046|ref|YP_006923417.1|	-	0.044	13.4	0.0	0.051	13.1	0.0	1.2	1	0	0	1	1	1	0	Nucleotide	hydrolase
Methyltransf_25	PF13649.6	gi|410671047|ref|YP_006923418.1|	-	1.2e-18	67.6	0.1	1.8e-18	67.0	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410671047|ref|YP_006923418.1|	-	9.4e-18	64.7	0.2	1.5e-17	64.0	0.2	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|410671047|ref|YP_006923418.1|	-	2.4e-15	56.5	0.0	3e-15	56.2	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_31	PF13847.6	gi|410671047|ref|YP_006923418.1|	-	2.4e-15	56.6	0.0	2.9e-15	56.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|410671047|ref|YP_006923418.1|	-	1.5e-13	50.9	0.0	2.1e-13	50.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|410671047|ref|YP_006923418.1|	-	7.2e-12	45.9	0.0	1.6e-11	44.8	0.0	1.5	2	0	0	2	2	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|410671047|ref|YP_006923418.1|	-	9.2e-11	41.9	0.0	1.2e-10	41.5	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
NodS	PF05401.11	gi|410671047|ref|YP_006923418.1|	-	9.7e-06	25.3	0.0	1.2e-05	25.0	0.0	1.1	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
Methyltransf_3	PF01596.17	gi|410671047|ref|YP_006923418.1|	-	1.3e-05	24.5	0.0	2.4e-05	23.6	0.0	1.3	1	1	0	1	1	1	1	O-methyltransferase
Methyltr_RsmB-F	PF01189.17	gi|410671047|ref|YP_006923418.1|	-	2.1e-05	24.2	0.0	4.8e-05	23.1	0.0	1.5	2	0	0	2	2	2	1	16S	rRNA	methyltransferase	RsmB/F
FtsJ	PF01728.19	gi|410671047|ref|YP_006923418.1|	-	2.9e-05	24.3	0.0	3.1e-05	24.1	0.0	1.1	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
GCD14	PF08704.10	gi|410671047|ref|YP_006923418.1|	-	6.7e-05	22.7	0.0	7.9e-05	22.5	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
PrmA	PF06325.13	gi|410671047|ref|YP_006923418.1|	-	0.00036	20.0	0.0	0.00042	19.8	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
RrnaAD	PF00398.20	gi|410671047|ref|YP_006923418.1|	-	0.00045	19.4	0.0	0.00063	18.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
MTS	PF05175.14	gi|410671047|ref|YP_006923418.1|	-	0.0005	19.7	0.0	0.00066	19.3	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	small	domain
Met_10	PF02475.16	gi|410671047|ref|YP_006923418.1|	-	0.00091	19.0	0.0	0.0011	18.8	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_24	PF13578.6	gi|410671047|ref|YP_006923418.1|	-	0.001	20.1	0.0	0.0017	19.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|410671047|ref|YP_006923418.1|	-	0.0034	17.3	0.0	0.0051	16.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|410671047|ref|YP_006923418.1|	-	0.0053	16.1	0.0	0.0068	15.7	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_16	PF10294.9	gi|410671047|ref|YP_006923418.1|	-	0.0053	16.5	0.0	0.0062	16.3	0.0	1.1	1	0	0	1	1	1	1	Lysine	methyltransferase
Methyltransf_9	PF08003.11	gi|410671047|ref|YP_006923418.1|	-	0.014	14.4	0.0	0.016	14.1	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
Methyltransf_4	PF02390.17	gi|410671047|ref|YP_006923418.1|	-	0.037	13.5	0.0	0.094	12.2	0.0	1.6	2	0	0	2	2	2	0	Putative	methyltransferase
tRNA_U5-meth_tr	PF05958.11	gi|410671047|ref|YP_006923418.1|	-	0.13	11.2	0.0	0.16	10.9	0.0	1.1	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
HicA_toxin	PF07927.12	gi|410671048|ref|YP_006923419.1|	-	1.7e-21	76.0	0.7	1.9e-21	75.8	0.7	1.1	1	0	0	1	1	1	1	HicA	toxin	of	bacterial	toxin-antitoxin,
HicB_lk_antitox	PF15919.5	gi|410671049|ref|YP_006923420.1|	-	3.4e-07	30.4	0.1	3.5e-07	30.4	0.1	1.0	1	0	0	1	1	1	1	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
DUF1902	PF08972.11	gi|410671049|ref|YP_006923420.1|	-	0.069	13.1	0.1	0.077	13.0	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1902)
Glyoxalase	PF00903.25	gi|410671050|ref|YP_006923421.1|	-	3e-15	56.5	0.0	3.4e-15	56.4	0.0	1.0	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|410671050|ref|YP_006923421.1|	-	0.00035	20.8	0.0	0.00071	19.8	0.0	1.5	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|410671050|ref|YP_006923421.1|	-	0.0011	19.8	0.0	0.0017	19.1	0.0	1.2	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_2	PF12681.7	gi|410671050|ref|YP_006923421.1|	-	0.0011	18.9	0.1	0.17	11.8	0.0	2.1	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_3	PF13468.6	gi|410671050|ref|YP_006923421.1|	-	0.039	14.1	0.0	0.26	11.4	0.0	2.1	1	1	0	1	1	1	0	Glyoxalase-like	domain
DUF3795	PF12675.7	gi|410671051|ref|YP_006923422.1|	-	3.3e-07	30.6	16.8	7e-06	26.4	16.8	2.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3795)
QVR	PF17064.5	gi|410671051|ref|YP_006923422.1|	-	0.021	15.0	7.1	0.035	14.3	7.1	1.3	1	0	0	1	1	1	0	Sleepless	protein
PolC_DP2	PF03833.13	gi|410671051|ref|YP_006923422.1|	-	0.037	11.9	6.8	0.051	11.4	6.8	1.1	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
GyrI-like	PF06445.15	gi|410671052|ref|YP_006923423.1|	-	2e-25	89.9	0.8	2.4e-25	89.6	0.8	1.0	1	0	0	1	1	1	1	GyrI-like	small	molecule	binding	domain
Cass2	PF14526.6	gi|410671052|ref|YP_006923423.1|	-	1.8e-08	34.7	0.2	2e-08	34.5	0.2	1.0	1	0	0	1	1	1	1	Integron-associated	effector	binding	protein
TetR_N	PF00440.23	gi|410671054|ref|YP_006923425.1|	-	4.3e-14	52.0	0.1	1e-13	50.8	0.0	1.7	1	1	1	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_24	PF17932.1	gi|410671054|ref|YP_006923425.1|	-	7.3e-05	23.0	0.2	0.00017	21.8	0.2	1.6	1	1	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_6	PF13977.6	gi|410671054|ref|YP_006923425.1|	-	0.00094	19.4	0.0	0.0019	18.4	0.0	1.4	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_C_11	PF16859.5	gi|410671054|ref|YP_006923425.1|	-	0.0029	17.9	0.0	0.0043	17.3	0.0	1.4	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_4	PF08359.11	gi|410671054|ref|YP_006923425.1|	-	0.01	16.0	0.4	0.059	13.5	0.2	2.2	1	1	1	2	2	2	0	YsiA-like	protein,	C-terminal	region
TetR_C_29	PF17938.1	gi|410671054|ref|YP_006923425.1|	-	0.015	15.3	0.1	0.027	14.5	0.1	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
HTH_Tnp_1_2	PF13022.6	gi|410671054|ref|YP_006923425.1|	-	0.074	13.2	0.1	0.16	12.1	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	of	insertion	element	transposase
TetR_C_25	PF17933.1	gi|410671054|ref|YP_006923425.1|	-	0.11	12.9	0.0	0.19	12.1	0.0	1.4	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
ABC_tran	PF00005.27	gi|410671055|ref|YP_006923426.1|	-	6.5e-36	123.9	0.0	1.1e-35	123.1	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|410671055|ref|YP_006923426.1|	-	4.4e-12	46.4	0.7	1.3e-07	31.7	0.2	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|410671055|ref|YP_006923426.1|	-	2e-10	41.2	0.1	5.3e-10	39.9	0.1	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_15	PF13175.6	gi|410671055|ref|YP_006923426.1|	-	1.5e-07	31.5	0.0	0.0048	16.6	0.0	2.3	1	1	1	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|410671055|ref|YP_006923426.1|	-	2.3e-06	28.3	0.1	6.7e-06	26.8	0.1	1.8	1	1	1	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|410671055|ref|YP_006923426.1|	-	0.00021	21.7	0.1	0.0033	17.9	0.1	2.7	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.15	gi|410671055|ref|YP_006923426.1|	-	0.00056	19.9	0.0	0.00088	19.2	0.0	1.4	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_29	PF13555.6	gi|410671055|ref|YP_006923426.1|	-	0.0009	18.9	0.1	0.0017	18.0	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|410671055|ref|YP_006923426.1|	-	0.0011	18.6	0.0	0.002	17.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|410671055|ref|YP_006923426.1|	-	0.0018	17.8	0.1	0.026	14.0	0.1	2.3	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
MukB	PF04310.12	gi|410671055|ref|YP_006923426.1|	-	0.003	17.4	0.1	0.0066	16.3	0.1	1.5	1	0	0	1	1	1	1	MukB	N-terminal
AAA_22	PF13401.6	gi|410671055|ref|YP_006923426.1|	-	0.0042	17.4	0.2	0.01	16.1	0.2	1.6	1	1	0	1	1	1	1	AAA	domain
SRP54	PF00448.22	gi|410671055|ref|YP_006923426.1|	-	0.0093	15.6	0.0	0.025	14.2	0.0	1.6	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
IstB_IS21	PF01695.17	gi|410671055|ref|YP_006923426.1|	-	0.11	12.2	0.0	9.5	5.9	0.0	2.4	2	1	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_30	PF13604.6	gi|410671055|ref|YP_006923426.1|	-	0.14	11.9	0.0	0.31	10.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|410671055|ref|YP_006923426.1|	-	0.22	11.2	1.3	3	7.5	0.2	2.3	2	0	0	2	2	2	0	AAA	domain
ABC2_membrane	PF01061.24	gi|410671056|ref|YP_006923427.1|	-	4.3e-38	130.9	23.5	4.3e-38	130.9	23.5	1.5	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|410671056|ref|YP_006923427.1|	-	1.2e-13	50.9	30.3	1.2e-13	50.9	30.3	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
Fic	PF02661.18	gi|410671057|ref|YP_006923428.1|	-	1.4e-22	80.4	0.0	4.8e-22	78.7	0.0	1.9	2	0	0	2	2	2	1	Fic/DOC	family
Polbeta	PF18765.1	gi|410671058|ref|YP_006923429.1|	-	7.8e-22	77.2	0.1	1.1e-21	76.7	0.1	1.2	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
NTP_transf_2	PF01909.23	gi|410671058|ref|YP_006923429.1|	-	6.5e-10	39.2	0.3	9.5e-10	38.7	0.3	1.3	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DUF86	PF01934.17	gi|410671059|ref|YP_006923430.1|	-	3.2e-26	91.5	0.0	3.8e-26	91.3	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
DUF3528	PF12045.8	gi|410671059|ref|YP_006923430.1|	-	0.17	12.5	0.0	0.21	12.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3528)
T2SSE	PF00437.20	gi|410671060|ref|YP_006923431.1|	-	1.7e-12	47.0	0.0	2.8e-12	46.3	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
KH_1	PF00013.29	gi|410671060|ref|YP_006923431.1|	-	3.8e-06	26.6	0.5	1.7e-05	24.5	0.5	2.1	1	0	0	1	1	1	1	KH	domain
KH_2	PF07650.17	gi|410671060|ref|YP_006923431.1|	-	2.2e-05	24.2	0.6	7.5e-05	22.5	0.3	2.0	1	1	0	1	1	1	1	KH	domain
TIP49	PF06068.13	gi|410671060|ref|YP_006923431.1|	-	0.00024	20.4	0.9	0.0054	16.0	0.0	2.6	2	1	0	2	2	2	1	TIP49	P-loop	domain
AAA_16	PF13191.6	gi|410671060|ref|YP_006923431.1|	-	0.00029	21.2	0.0	0.0007	20.0	0.0	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
KH_4	PF13083.6	gi|410671060|ref|YP_006923431.1|	-	0.00081	19.2	0.1	0.003	17.4	0.1	2.0	1	0	0	1	1	1	1	KH	domain
ATPase	PF06745.13	gi|410671060|ref|YP_006923431.1|	-	0.0055	16.1	0.0	0.029	13.7	0.0	2.1	2	0	0	2	2	2	1	KaiC
NTPase_1	PF03266.15	gi|410671060|ref|YP_006923431.1|	-	0.0066	16.4	0.0	0.019	14.9	0.0	1.8	1	0	0	1	1	1	1	NTPase
AAA_7	PF12775.7	gi|410671060|ref|YP_006923431.1|	-	0.0079	15.7	0.0	0.015	14.9	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
IstB_IS21	PF01695.17	gi|410671060|ref|YP_006923431.1|	-	0.0092	15.7	0.0	0.016	15.0	0.0	1.3	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_29	PF13555.6	gi|410671060|ref|YP_006923431.1|	-	0.017	14.9	0.0	0.044	13.5	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
PIN	PF01850.21	gi|410671060|ref|YP_006923431.1|	-	0.026	15.0	0.0	0.096	13.2	0.0	2.0	1	1	0	1	1	1	0	PIN	domain
RuvB_N	PF05496.12	gi|410671060|ref|YP_006923431.1|	-	0.026	14.3	0.0	0.14	11.9	0.0	2.0	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA	PF00004.29	gi|410671060|ref|YP_006923431.1|	-	0.032	14.7	0.0	0.09	13.2	0.0	1.8	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.14	gi|410671060|ref|YP_006923431.1|	-	0.034	14.2	0.0	0.073	13.1	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_30	PF13604.6	gi|410671060|ref|YP_006923431.1|	-	0.037	13.7	0.0	0.13	12.0	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
TsaE	PF02367.17	gi|410671060|ref|YP_006923431.1|	-	0.045	13.8	0.1	0.2	11.7	0.0	1.9	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_25	PF13481.6	gi|410671060|ref|YP_006923431.1|	-	0.053	13.1	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|410671060|ref|YP_006923431.1|	-	0.065	13.8	0.0	0.16	12.6	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_11	PF13086.6	gi|410671060|ref|YP_006923431.1|	-	0.07	12.9	0.0	0.12	12.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|410671060|ref|YP_006923431.1|	-	0.079	13.1	0.0	0.15	12.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|410671060|ref|YP_006923431.1|	-	0.086	12.7	0.0	0.2	11.5	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
ABC_tran	PF00005.27	gi|410671060|ref|YP_006923431.1|	-	0.11	13.0	0.0	0.29	11.7	0.0	1.8	1	0	0	1	1	1	0	ABC	transporter
eIF-5a	PF01287.20	gi|410671060|ref|YP_006923431.1|	-	0.11	12.6	0.0	2.6	8.2	0.0	3.1	2	0	0	2	2	2	0	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
CbiA	PF01656.23	gi|410671060|ref|YP_006923431.1|	-	0.12	12.4	0.1	0.34	11.0	0.1	1.8	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
PPV_E1_C	PF00519.17	gi|410671060|ref|YP_006923431.1|	-	0.13	11.1	0.0	0.2	10.5	0.0	1.2	1	0	0	1	1	1	0	Papillomavirus	helicase
AAA_24	PF13479.6	gi|410671060|ref|YP_006923431.1|	-	0.13	12.0	0.0	0.32	10.7	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|410671060|ref|YP_006923431.1|	-	0.13	12.6	0.0	0.28	11.6	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
PRA-CH	PF01502.18	gi|410671061|ref|YP_006923432.1|	-	2.9e-36	123.1	1.6	3.8e-36	122.8	1.6	1.2	1	0	0	1	1	1	1	Phosphoribosyl-AMP	cyclohydrolase
Sortilin-Vps10	PF15902.5	gi|410671061|ref|YP_006923432.1|	-	0.085	11.6	0.0	0.097	11.4	0.0	1.0	1	0	0	1	1	1	0	Sortilin,	neurotensin	receptor	3,
ATPase	PF06745.13	gi|410671062|ref|YP_006923433.1|	-	1.5e-31	109.5	0.4	2e-31	109.1	0.4	1.2	1	0	0	1	1	1	1	KaiC
GvpD	PF07088.11	gi|410671062|ref|YP_006923433.1|	-	1.1e-08	34.1	0.1	8.8e-08	31.2	0.1	1.9	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
PAXNEB	PF05625.11	gi|410671062|ref|YP_006923433.1|	-	2.6e-06	26.8	0.2	0.0055	15.9	0.1	2.1	2	0	0	2	2	2	2	PAXNEB	protein
MEDS	PF14417.6	gi|410671062|ref|YP_006923433.1|	-	0.00013	21.9	0.0	0.0002	21.2	0.0	1.3	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
Fe-S_biosyn	PF01521.20	gi|410671064|ref|YP_006923435.1|	-	2.7e-12	46.8	0.1	3.3e-12	46.6	0.1	1.0	1	0	0	1	1	1	1	Iron-sulphur	cluster	biosynthesis
NAC	PF01849.18	gi|410671065|ref|YP_006923436.1|	-	6.6e-17	61.2	2.6	6.6e-17	61.2	2.6	1.5	2	0	0	2	2	2	1	NAC	domain
Sigma70_r3	PF04539.16	gi|410671065|ref|YP_006923436.1|	-	0.00017	21.6	3.0	0.029	14.5	0.1	3.3	2	2	1	3	3	3	2	Sigma-70	region	3
UBA_4	PF14555.6	gi|410671065|ref|YP_006923436.1|	-	0.00069	19.4	0.3	0.0037	17.0	0.1	2.1	2	0	0	2	2	2	1	UBA-like	domain
DUF3562	PF12085.8	gi|410671065|ref|YP_006923436.1|	-	0.0091	15.6	0.5	0.69	9.6	0.1	2.3	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF3562)
UPF0154	PF03672.13	gi|410671065|ref|YP_006923436.1|	-	0.025	14.6	2.8	0.22	11.6	2.9	2.0	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0154)
Peptidase_S49	PF01343.18	gi|410671065|ref|YP_006923436.1|	-	0.069	13.1	0.4	0.13	12.3	0.4	1.5	1	1	0	1	1	1	0	Peptidase	family	S49
Death	PF00531.22	gi|410671065|ref|YP_006923436.1|	-	0.076	13.2	0.0	16	5.7	0.0	2.1	2	0	0	2	2	2	0	Death	domain
AMP-binding	PF00501.28	gi|410671067|ref|YP_006923438.1|	-	2.8e-97	326.0	0.6	4e-97	325.5	0.0	1.4	2	0	0	2	2	2	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|410671067|ref|YP_006923438.1|	-	1.6e-24	86.7	0.0	3.5e-24	85.6	0.0	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|410671067|ref|YP_006923438.1|	-	2.2e-17	62.7	5.6	4.9e-17	61.6	5.6	1.6	1	0	0	1	1	1	1	Acetyl-coenzyme	A	synthetase	N-terminus
RVT_3	PF13456.6	gi|410671068|ref|YP_006923439.1|	-	2.7e-14	53.1	0.0	4.3e-14	52.4	0.0	1.3	1	0	0	1	1	1	1	Reverse	transcriptase-like
RNase_H	PF00075.24	gi|410671068|ref|YP_006923439.1|	-	0.00023	21.3	0.0	0.0004	20.6	0.0	1.3	1	0	0	1	1	1	1	RNase	H
QRPTase_C	PF01729.19	gi|410671069|ref|YP_006923440.1|	-	2e-25	89.5	0.0	3.5e-25	88.7	0.0	1.4	1	1	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.16	gi|410671069|ref|YP_006923440.1|	-	1.6e-12	47.3	0.0	2.5e-12	46.7	0.0	1.3	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Thioredoxin	PF00085.20	gi|410671070|ref|YP_006923441.1|	-	6.4e-13	48.6	0.1	6.8e-13	48.5	0.1	1.0	1	0	0	1	1	1	1	Thioredoxin
KaiB	PF07689.12	gi|410671070|ref|YP_006923441.1|	-	7.7e-08	32.0	0.1	8.7e-08	31.8	0.1	1.1	1	0	0	1	1	1	1	KaiB	domain
Thioredoxin_2	PF13098.6	gi|410671070|ref|YP_006923441.1|	-	4.2e-06	27.2	0.0	4.9e-06	27.0	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_3	PF13192.6	gi|410671070|ref|YP_006923441.1|	-	5.1e-05	23.3	0.2	5.8e-05	23.1	0.2	1.2	1	0	0	1	1	1	1	Thioredoxin	domain
HyaE	PF07449.11	gi|410671070|ref|YP_006923441.1|	-	0.00034	20.5	0.0	0.00073	19.5	0.0	1.6	1	1	1	2	2	2	1	Hydrogenase-1	expression	protein	HyaE
Thioredoxin_8	PF13905.6	gi|410671070|ref|YP_006923441.1|	-	0.00046	20.5	0.0	0.00063	20.0	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_9	PF14595.6	gi|410671070|ref|YP_006923441.1|	-	0.00064	19.5	0.0	0.00064	19.5	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
DUF836	PF05768.14	gi|410671070|ref|YP_006923441.1|	-	0.0014	19.0	0.0	0.0015	18.9	0.0	1.2	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Glutaredoxin	PF00462.24	gi|410671070|ref|YP_006923441.1|	-	0.0042	17.3	0.1	0.0061	16.7	0.1	1.3	1	0	0	1	1	1	1	Glutaredoxin
ABC_transp_aux	PF09822.9	gi|410671070|ref|YP_006923441.1|	-	0.0045	16.5	0.0	0.0045	16.5	0.0	1.0	1	0	0	1	1	1	1	ABC-type	uncharacterized	transport	system
Thioredoxin_6	PF13848.6	gi|410671070|ref|YP_006923441.1|	-	0.0095	15.9	0.0	0.01	15.8	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin-like	domain
Calsequestrin	PF01216.17	gi|410671070|ref|YP_006923441.1|	-	0.013	14.6	0.2	0.013	14.6	0.2	1.0	1	0	0	1	1	1	0	Calsequestrin
Thioredoxin_5	PF13743.6	gi|410671070|ref|YP_006923441.1|	-	0.075	12.7	0.0	0.13	11.9	0.0	1.5	1	1	0	1	1	1	0	Thioredoxin
DSBA	PF01323.20	gi|410671070|ref|YP_006923441.1|	-	0.078	12.7	0.0	0.078	12.7	0.0	1.1	1	0	0	1	1	1	0	DSBA-like	thioredoxin	domain
CsrA	PF02599.16	gi|410671070|ref|YP_006923441.1|	-	0.081	12.9	0.2	0.11	12.5	0.2	1.2	1	0	0	1	1	1	0	Global	regulator	protein	family
OST3_OST6	PF04756.13	gi|410671070|ref|YP_006923441.1|	-	0.083	12.2	0.0	0.083	12.2	0.0	1.1	1	0	0	1	1	1	0	OST3	/	OST6	family,	transporter	family
ChapFlgA_N	PF17656.1	gi|410671070|ref|YP_006923441.1|	-	0.11	12.6	0.0	0.15	12.3	0.0	1.2	1	0	0	1	1	1	0	FlgA	N-terminal	domain
TraF	PF13728.6	gi|410671070|ref|YP_006923441.1|	-	0.18	11.6	0.0	0.18	11.6	0.0	1.1	1	0	0	1	1	1	0	F	plasmid	transfer	operon	protein
Lactamase_B_2	PF12706.7	gi|410671071|ref|YP_006923442.1|	-	1.6e-07	31.0	0.1	3.3e-07	30.0	0.1	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|410671071|ref|YP_006923442.1|	-	0.0061	16.5	0.2	0.027	14.4	0.2	2.0	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|410671071|ref|YP_006923442.1|	-	0.016	15.2	1.4	0.028	14.4	0.1	1.9	2	0	0	2	2	2	0	Metallo-beta-lactamase	superfamily
Rab5ip	PF07019.12	gi|410671072|ref|YP_006923443.1|	-	0.36	11.5	5.9	0.65	10.6	5.9	1.4	1	1	0	1	1	1	0	Rab5-interacting	protein	(Rab5ip)
ABC_tran	PF00005.27	gi|410671073|ref|YP_006923444.1|	-	1.2e-39	136.0	0.0	1.1e-21	77.7	0.0	2.7	2	1	0	2	2	2	2	ABC	transporter
SMC_N	PF02463.19	gi|410671073|ref|YP_006923444.1|	-	7.5e-14	51.7	6.3	8e-05	22.2	0.0	4.5	5	0	0	5	5	5	3	RecF/RecN/SMC	N	terminal	domain
RLI	PF04068.15	gi|410671073|ref|YP_006923444.1|	-	1.8e-12	46.9	3.1	3.3e-12	46.0	3.1	1.5	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
AAA_21	PF13304.6	gi|410671073|ref|YP_006923444.1|	-	1.4e-11	44.8	3.4	0.011	15.6	0.2	4.1	3	1	1	4	4	4	3	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Fer4	PF00037.27	gi|410671073|ref|YP_006923444.1|	-	1.4e-07	31.0	4.5	1.4e-07	31.0	4.5	2.5	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Rad17	PF03215.15	gi|410671073|ref|YP_006923444.1|	-	2.1e-06	27.8	0.0	0.049	13.6	0.0	2.3	2	0	0	2	2	2	2	Rad17	P-loop	domain
AAA_23	PF13476.6	gi|410671073|ref|YP_006923444.1|	-	7.1e-06	26.7	0.8	0.033	14.7	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
Fer4_10	PF13237.6	gi|410671073|ref|YP_006923444.1|	-	1.5e-05	25.0	3.5	0.0023	18.0	0.1	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
AAA_16	PF13191.6	gi|410671073|ref|YP_006923444.1|	-	1.7e-05	25.2	0.1	0.076	13.4	0.0	3.1	2	1	1	3	3	3	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|410671073|ref|YP_006923444.1|	-	0.00012	21.8	1.2	0.5	10.2	0.0	2.6	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
RNA_helicase	PF00910.22	gi|410671073|ref|YP_006923444.1|	-	0.00015	22.1	0.0	0.75	10.2	0.0	2.7	2	0	0	2	2	2	2	RNA	helicase
AAA_15	PF13175.6	gi|410671073|ref|YP_006923444.1|	-	0.00026	20.8	0.4	0.64	9.7	0.0	3.0	3	0	0	3	3	3	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|410671073|ref|YP_006923444.1|	-	0.00034	20.6	0.9	0.1	12.5	0.1	2.3	2	0	0	2	2	2	1	RsgA	GTPase
AAA_24	PF13479.6	gi|410671073|ref|YP_006923444.1|	-	0.00044	20.0	0.2	0.49	10.1	0.1	2.3	2	0	0	2	2	2	2	AAA	domain
Fer4_7	PF12838.7	gi|410671073|ref|YP_006923444.1|	-	0.00082	19.9	6.5	0.0022	18.6	6.5	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410671073|ref|YP_006923444.1|	-	0.0011	18.9	3.5	0.0011	18.9	3.5	2.5	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410671073|ref|YP_006923444.1|	-	0.0013	18.8	6.0	0.0025	17.9	6.0	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410671073|ref|YP_006923444.1|	-	0.0024	18.0	7.0	0.0054	16.9	7.0	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
AAA	PF00004.29	gi|410671073|ref|YP_006923444.1|	-	0.0045	17.4	0.0	0.75	10.2	0.0	2.5	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Fer4_2	PF12797.7	gi|410671073|ref|YP_006923444.1|	-	0.0047	16.9	1.4	0.0047	16.9	1.4	2.6	2	0	0	2	2	2	1	4Fe-4S	binding	domain
AAA_22	PF13401.6	gi|410671073|ref|YP_006923444.1|	-	0.0067	16.7	0.1	0.56	10.5	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
dNK	PF01712.19	gi|410671073|ref|YP_006923444.1|	-	0.012	15.4	0.0	1.9	8.3	0.0	2.3	2	0	0	2	2	2	0	Deoxynucleoside	kinase
NACHT	PF05729.12	gi|410671073|ref|YP_006923444.1|	-	0.016	15.1	1.0	2	8.3	0.0	2.4	2	0	0	2	2	2	0	NACHT	domain
AAA_18	PF13238.6	gi|410671073|ref|YP_006923444.1|	-	0.019	15.5	0.3	12	6.4	0.0	3.2	3	0	0	3	3	3	0	AAA	domain
DUF87	PF01935.17	gi|410671073|ref|YP_006923444.1|	-	0.03	14.4	0.0	13	5.8	0.0	2.7	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AAA_14	PF13173.6	gi|410671073|ref|YP_006923444.1|	-	0.03	14.3	0.8	6.8	6.7	0.0	3.3	3	0	0	3	3	3	0	AAA	domain
MMR_HSR1	PF01926.23	gi|410671073|ref|YP_006923444.1|	-	0.032	14.3	0.1	2.1	8.5	0.1	2.8	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_5	PF07728.14	gi|410671073|ref|YP_006923444.1|	-	0.035	14.1	0.5	16	5.5	0.1	3.1	3	0	0	3	3	3	0	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.6	gi|410671073|ref|YP_006923444.1|	-	0.037	14.2	0.4	2.4	8.3	0.0	2.8	3	0	0	3	3	2	0	AAA	domain
SbcCD_C	PF13558.6	gi|410671073|ref|YP_006923444.1|	-	0.039	14.2	0.0	21	5.4	0.0	2.9	2	1	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
VirE	PF05272.11	gi|410671073|ref|YP_006923444.1|	-	0.055	13.2	0.0	2.9	7.6	0.0	2.3	2	0	0	2	2	2	0	Virulence-associated	protein	E
NB-ARC	PF00931.22	gi|410671073|ref|YP_006923444.1|	-	0.071	12.3	0.1	0.88	8.7	0.0	2.1	2	0	0	2	2	2	0	NB-ARC	domain
MeaB	PF03308.16	gi|410671073|ref|YP_006923444.1|	-	0.093	11.7	1.3	4	6.3	0.1	2.2	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Fer4_16	PF13484.6	gi|410671073|ref|YP_006923444.1|	-	0.12	13.3	0.7	0.12	13.3	0.7	2.3	2	0	0	2	2	2	0	4Fe-4S	double	cluster	binding	domain
NTPase_1	PF03266.15	gi|410671073|ref|YP_006923444.1|	-	0.16	11.9	2.2	7.1	6.5	0.1	3.0	3	0	0	3	3	3	0	NTPase
AAA_25	PF13481.6	gi|410671073|ref|YP_006923444.1|	-	0.16	11.5	2.0	16	5.0	0.0	3.5	4	0	0	4	4	4	0	AAA	domain
AAA_30	PF13604.6	gi|410671073|ref|YP_006923444.1|	-	0.5	10.0	1.6	29	4.3	0.0	2.8	3	0	0	3	3	3	0	AAA	domain
Fer4_17	PF13534.6	gi|410671073|ref|YP_006923444.1|	-	2.6	8.7	7.2	0.7	10.5	0.3	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410671073|ref|YP_006923444.1|	-	6.2	7.6	13.7	1.2	9.8	2.6	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Rubrerythrin	PF02915.17	gi|410671074|ref|YP_006923445.1|	-	1.2e-06	28.9	1.3	1.4e-06	28.8	1.3	1.1	1	0	0	1	1	1	1	Rubrerythrin
DUF2383	PF09537.10	gi|410671074|ref|YP_006923445.1|	-	0.0031	17.8	0.4	0.0041	17.5	0.4	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2383)
COQ7	PF03232.13	gi|410671074|ref|YP_006923445.1|	-	0.0032	17.2	0.3	0.0039	17.0	0.3	1.2	1	0	0	1	1	1	1	Ubiquinone	biosynthesis	protein	COQ7
DUF892	PF05974.12	gi|410671074|ref|YP_006923445.1|	-	0.026	14.5	3.2	0.027	14.5	3.2	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF892)
Ferritin_2	PF13668.6	gi|410671074|ref|YP_006923445.1|	-	0.04	14.1	0.0	0.045	13.9	0.0	1.1	1	0	0	1	1	1	0	Ferritin-like	domain
MSL1_dimer	PF16801.5	gi|410671074|ref|YP_006923445.1|	-	0.067	13.0	2.7	0.067	13.0	2.7	1.7	2	0	0	2	2	2	0	Dimerisation	domain	of	Male-specific-Lethal	1
Rubrerythrin	PF02915.17	gi|410671075|ref|YP_006923446.1|	-	4e-07	30.5	0.2	4.7e-07	30.3	0.2	1.1	1	0	0	1	1	1	1	Rubrerythrin
COQ7	PF03232.13	gi|410671075|ref|YP_006923446.1|	-	0.00042	20.1	0.2	0.0005	19.9	0.2	1.1	1	0	0	1	1	1	1	Ubiquinone	biosynthesis	protein	COQ7
DUF2202	PF09968.9	gi|410671075|ref|YP_006923446.1|	-	0.0067	16.3	0.6	0.0071	16.2	0.6	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	domain	(DUF2202)
Ferritin_2	PF13668.6	gi|410671075|ref|YP_006923446.1|	-	0.018	15.3	0.1	0.021	15.0	0.1	1.1	1	0	0	1	1	1	0	Ferritin-like	domain
DUF3262	PF11660.8	gi|410671076|ref|YP_006923447.1|	-	0.01	16.2	1.4	0.01	16.2	1.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3262)
Baculo_11_kDa	PF06143.11	gi|410671076|ref|YP_006923447.1|	-	0.023	14.3	0.5	0.024	14.2	0.5	1.0	1	0	0	1	1	1	0	Baculovirus	11	kDa	family
FUSC	PF04632.12	gi|410671077|ref|YP_006923448.1|	-	4.8	5.6	8.4	5.6	5.4	8.4	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF11	PF01345.18	gi|410671078|ref|YP_006923449.1|	-	9e-12	45.1	3.1	5.7e-05	23.3	0.1	3.8	3	0	0	3	3	3	3	Domain	of	unknown	function	DUF11
bMG10	PF17973.1	gi|410671078|ref|YP_006923449.1|	-	9.1e-05	22.7	1.1	5.2	7.3	0.0	4.6	2	2	2	4	4	4	2	Bacterial	Alpha-2-macroglobulin	MG10	domain
Big_6	PF17936.1	gi|410671078|ref|YP_006923449.1|	-	0.0089	16.3	0.1	13	6.1	0.0	4.1	3	1	1	4	4	4	1	Bacterial	Ig	domain
CARDB	PF07705.11	gi|410671078|ref|YP_006923449.1|	-	0.031	14.5	1.0	12	6.2	0.1	3.5	3	0	0	3	3	3	0	CARDB
TRAP_beta	PF05753.14	gi|410671078|ref|YP_006923449.1|	-	0.12	11.7	1.5	7.5	5.9	0.8	3.1	1	1	1	2	2	2	0	Translocon-associated	protein	beta	(TRAPB)
ABC2_membrane_3	PF12698.7	gi|410671079|ref|YP_006923450.1|	-	1.2e-17	64.1	16.0	1.7e-17	63.6	15.8	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|410671079|ref|YP_006923450.1|	-	2e-12	47.0	13.4	2e-12	47.0	13.4	1.9	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|410671079|ref|YP_006923450.1|	-	0.0001	21.8	20.5	0.0001	21.8	20.5	2.4	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|410671080|ref|YP_006923451.1|	-	8.3e-07	28.4	35.4	8.3e-07	28.4	35.4	3.0	1	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|410671082|ref|YP_006923453.1|	-	7.4e-29	101.0	0.0	1.8e-28	99.7	0.0	1.6	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|410671082|ref|YP_006923453.1|	-	6.5e-11	42.6	0.0	0.00059	19.7	0.0	2.4	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|410671082|ref|YP_006923453.1|	-	6e-07	30.1	0.1	1.3e-06	29.0	0.1	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_23	PF13476.6	gi|410671082|ref|YP_006923453.1|	-	0.00025	21.6	2.7	0.00042	20.9	0.1	2.3	2	1	0	2	2	2	1	AAA	domain
AAA_27	PF13514.6	gi|410671082|ref|YP_006923453.1|	-	0.0054	16.3	0.0	0.01	15.4	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|410671082|ref|YP_006923453.1|	-	0.0069	16.1	0.0	0.081	12.6	0.0	2.0	1	1	0	2	2	2	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|410671082|ref|YP_006923453.1|	-	0.0093	15.7	0.1	0.047	13.4	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
SRP54	PF00448.22	gi|410671082|ref|YP_006923453.1|	-	0.014	15.1	0.1	0.027	14.1	0.1	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_24	PF13479.6	gi|410671082|ref|YP_006923453.1|	-	0.045	13.5	0.4	0.52	10.0	0.2	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|410671082|ref|YP_006923453.1|	-	0.046	13.5	0.5	0.1	12.3	0.1	1.7	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
Rad17	PF03215.15	gi|410671082|ref|YP_006923453.1|	-	0.051	13.5	0.0	0.074	13.0	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
SMC_N	PF02463.19	gi|410671082|ref|YP_006923453.1|	-	0.056	12.9	0.1	2.1	7.7	0.1	2.2	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
DUF5616	PF18481.1	gi|410671082|ref|YP_006923453.1|	-	0.081	13.2	0.0	0.12	12.6	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5616)
AAA_22	PF13401.6	gi|410671082|ref|YP_006923453.1|	-	0.11	12.7	0.2	0.38	11.0	0.2	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_13	PF13166.6	gi|410671082|ref|YP_006923453.1|	-	0.14	10.8	0.1	4.8	5.7	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
PhoH	PF02562.16	gi|410671082|ref|YP_006923453.1|	-	0.15	11.5	0.5	0.6	9.5	0.0	2.2	3	1	1	4	4	4	0	PhoH-like	protein
AAA_28	PF13521.6	gi|410671082|ref|YP_006923453.1|	-	0.16	12.2	0.0	0.35	11.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
MarR	PF01047.22	gi|410671083|ref|YP_006923454.1|	-	9.5e-12	44.7	0.0	1.7e-11	43.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|410671083|ref|YP_006923454.1|	-	1.5e-10	40.8	0.0	2.6e-10	40.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|410671083|ref|YP_006923454.1|	-	5.5e-09	36.4	0.0	8.6e-09	35.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_36	PF13730.6	gi|410671083|ref|YP_006923454.1|	-	0.0004	20.3	0.0	0.0029	17.5	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
HxlR	PF01638.17	gi|410671083|ref|YP_006923454.1|	-	0.0019	18.0	0.0	0.0039	17.0	0.0	1.6	1	1	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_11	PF08279.12	gi|410671083|ref|YP_006923454.1|	-	0.019	14.9	0.0	0.039	13.9	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
TrmB	PF01978.19	gi|410671083|ref|YP_006923454.1|	-	0.03	14.2	0.0	0.044	13.7	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.19	gi|410671083|ref|YP_006923454.1|	-	0.034	14.4	0.0	0.058	13.6	0.0	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_24	PF13412.6	gi|410671083|ref|YP_006923454.1|	-	0.039	13.5	0.0	0.079	12.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MatE	PF01554.18	gi|410671084|ref|YP_006923455.1|	-	4.1e-56	189.1	46.5	9.5e-34	116.4	13.4	2.6	3	0	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|410671084|ref|YP_006923455.1|	-	1e-13	51.6	29.8	4.5e-12	46.2	11.0	4.9	3	2	2	5	5	5	2	Polysaccharide	biosynthesis	C-terminal	domain
DUF772	PF05598.11	gi|410671085|ref|YP_006923456.1|	-	4.2e-22	77.9	0.0	7.4e-22	77.2	0.0	1.3	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|410671085|ref|YP_006923456.1|	-	6.4e-12	45.6	0.4	1.4e-11	44.5	0.4	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_4	PF13359.6	gi|410671085|ref|YP_006923456.1|	-	0.0003	20.5	0.0	0.00058	19.6	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1_3	PF13612.6	gi|410671085|ref|YP_006923456.1|	-	0.00054	20.0	0.1	0.001	19.1	0.1	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF3693	PF12472.8	gi|410671085|ref|YP_006923456.1|	-	0.13	11.9	0.0	0.25	11.0	0.0	1.4	1	0	0	1	1	1	0	Phage	related	protein
CbiZ	PF01955.18	gi|410671086|ref|YP_006923457.1|	-	1.4e-61	207.9	0.4	1.8e-61	207.6	0.4	1.1	1	0	0	1	1	1	1	Adenosylcobinamide	amidohydrolase
AP_endonuc_2	PF01261.24	gi|410671087|ref|YP_006923458.1|	-	3.9e-07	29.7	0.0	5.6e-07	29.2	0.0	1.3	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Kelch_5	PF13854.6	gi|410671087|ref|YP_006923458.1|	-	0.07	13.1	0.0	0.15	12.0	0.0	1.6	1	0	0	1	1	1	0	Kelch	motif
HTH_5	PF01022.20	gi|410671088|ref|YP_006923460.1|	-	0.00043	20.1	0.2	0.00064	19.5	0.2	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|410671088|ref|YP_006923460.1|	-	0.0013	18.5	0.0	0.0021	17.9	0.0	1.2	1	0	0	1	1	1	1	MarR	family
DUF4430	PF14478.6	gi|410671088|ref|YP_006923460.1|	-	0.0065	17.1	1.3	0.013	16.1	1.3	1.6	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4430)
MarR	PF01047.22	gi|410671088|ref|YP_006923460.1|	-	0.014	15.3	0.0	0.025	14.5	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_20	PF12840.7	gi|410671088|ref|YP_006923460.1|	-	0.03	14.4	0.3	0.058	13.5	0.3	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HxlR	PF01638.17	gi|410671088|ref|YP_006923460.1|	-	0.032	14.1	0.1	0.055	13.3	0.1	1.4	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_24	PF13412.6	gi|410671088|ref|YP_006923460.1|	-	0.091	12.3	0.0	0.16	11.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
NUMOD1	PF07453.13	gi|410671088|ref|YP_006923460.1|	-	0.19	12.1	0.5	1.5	9.1	0.0	2.3	2	0	0	2	2	2	0	NUMOD1	domain
Radical_SAM	PF04055.21	gi|410671090|ref|YP_006923461.1|	-	8.4e-09	36.0	0.1	1.9e-08	34.9	0.0	1.6	2	0	0	2	2	2	1	Radical	SAM	superfamily
HHH_3	PF12836.7	gi|410671090|ref|YP_006923461.1|	-	6.8e-08	32.7	0.0	1.5e-07	31.5	0.0	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH	PF00633.23	gi|410671090|ref|YP_006923461.1|	-	5.9e-07	29.0	0.0	1.3e-06	28.0	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|410671090|ref|YP_006923461.1|	-	0.013	16.1	0.0	0.033	14.8	0.0	1.7	1	0	0	1	1	1	0	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|410671090|ref|YP_006923461.1|	-	0.14	12.3	0.0	0.26	11.4	0.0	1.3	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
DUF4130	PF13566.6	gi|410671091|ref|YP_006923462.1|	-	8.4e-08	32.4	0.0	1.2e-07	31.8	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4130
MutS_V	PF00488.21	gi|410671092|ref|YP_006923463.1|	-	1.3e-11	44.9	0.2	2.5e-11	44.0	0.2	1.4	1	0	0	1	1	1	1	MutS	domain	V
HHH_5	PF14520.6	gi|410671092|ref|YP_006923463.1|	-	5.2e-06	27.0	0.0	2.5e-05	24.8	0.0	2.2	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|410671092|ref|YP_006923463.1|	-	0.0042	17.1	0.0	0.013	15.6	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
AAA	PF00004.29	gi|410671092|ref|YP_006923463.1|	-	0.0099	16.3	1.3	0.028	14.8	0.1	2.4	3	0	0	3	3	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF1664	PF07889.12	gi|410671092|ref|YP_006923463.1|	-	0.016	15.3	0.5	1.9	8.6	0.1	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
AAA_14	PF13173.6	gi|410671092|ref|YP_006923463.1|	-	0.024	14.7	0.0	0.13	12.3	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|410671092|ref|YP_006923463.1|	-	0.093	13.1	0.4	0.7	10.3	0.1	2.5	2	1	0	2	2	2	0	AAA	ATPase	domain
IGPD	PF00475.18	gi|410671093|ref|YP_006923464.1|	-	9e-63	210.9	2.2	1.1e-62	210.6	2.2	1.1	1	0	0	1	1	1	1	Imidazoleglycerol-phosphate	dehydratase
His_biosynth	PF00977.21	gi|410671094|ref|YP_006923465.1|	-	3.8e-76	255.6	1.1	4.3e-76	255.4	1.1	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.17	gi|410671094|ref|YP_006923465.1|	-	1.4e-07	31.0	0.1	0.0042	16.2	0.0	2.1	1	1	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
DHO_dh	PF01180.21	gi|410671094|ref|YP_006923465.1|	-	2.2e-07	30.4	1.0	3.4e-05	23.2	0.3	2.2	2	0	0	2	2	2	2	Dihydroorotate	dehydrogenase
NMO	PF03060.15	gi|410671094|ref|YP_006923465.1|	-	1.1e-05	25.0	2.7	1.4e-05	24.7	0.4	1.9	2	0	0	2	2	2	1	Nitronate	monooxygenase
PcrB	PF01884.17	gi|410671094|ref|YP_006923465.1|	-	6.8e-05	22.4	0.2	0.00091	18.7	0.0	2.0	2	0	0	2	2	2	1	PcrB	family
IMPDH	PF00478.25	gi|410671094|ref|YP_006923465.1|	-	0.00012	21.2	4.3	0.0016	17.5	3.9	1.9	1	1	1	2	2	2	2	IMP	dehydrogenase	/	GMP	reductase	domain
ThiG	PF05690.14	gi|410671094|ref|YP_006923465.1|	-	0.00013	21.4	1.3	0.21	10.8	0.1	2.2	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
FMN_dh	PF01070.18	gi|410671094|ref|YP_006923465.1|	-	0.00078	18.6	1.7	0.55	9.2	0.1	2.1	2	0	0	2	2	2	2	FMN-dependent	dehydrogenase
DUF561	PF04481.12	gi|410671094|ref|YP_006923465.1|	-	0.0014	17.8	0.3	0.0024	17.1	0.3	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF561)
TMP-TENI	PF02581.17	gi|410671094|ref|YP_006923465.1|	-	0.0016	17.8	1.6	0.009	15.4	0.2	2.1	2	0	0	2	2	2	1	Thiamine	monophosphate	synthase
NanE	PF04131.14	gi|410671094|ref|YP_006923465.1|	-	0.0028	16.9	0.2	1.1	8.4	0.1	2.2	2	0	0	2	2	2	2	Putative	N-acetylmannosamine-6-phosphate	epimerase
G3P_antiterm	PF04309.12	gi|410671094|ref|YP_006923465.1|	-	0.0042	16.5	1.2	0.1	12.0	0.2	2.2	2	0	0	2	2	2	1	Glycerol-3-phosphate	responsive	antiterminator
IGPS	PF00218.21	gi|410671094|ref|YP_006923465.1|	-	0.0078	15.4	0.1	0.022	13.9	0.1	1.7	3	0	0	3	3	3	1	Indole-3-glycerol	phosphate	synthase
DNA_pol_lambd_f	PF10391.9	gi|410671094|ref|YP_006923465.1|	-	0.038	13.8	0.1	0.89	9.4	0.0	2.7	3	0	0	3	3	3	0	Fingers	domain	of	DNA	polymerase	lambda
HisG	PF01634.18	gi|410671095|ref|YP_006923466.1|	-	2.9e-52	176.8	0.6	4.6e-52	176.2	0.6	1.3	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
HisG_C	PF08029.11	gi|410671095|ref|YP_006923466.1|	-	1.4e-27	95.6	0.9	5.4e-27	93.7	0.6	2.1	2	0	0	2	2	2	1	HisG,	C-terminal	domain
NMT1	PF09084.11	gi|410671095|ref|YP_006923466.1|	-	0.0035	17.3	0.1	2.1	8.3	0.0	2.5	1	1	1	2	2	2	2	NMT1/THI5	like
EFG_IV	PF03764.18	gi|410671096|ref|YP_006923467.1|	-	0.19	11.5	0.0	0.19	11.5	0.0	1.0	1	0	0	1	1	1	0	Elongation	factor	G,	domain	IV
AdoMet_Synthase	PF01941.19	gi|410671097|ref|YP_006923468.1|	-	1.9e-177	590.0	1.6	2.2e-177	589.8	1.6	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
DDE_3	PF13358.6	gi|410671098|ref|YP_006923469.1|	-	6.1e-23	81.2	0.1	6.1e-23	81.2	0.1	1.4	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
DDE_1	PF03184.19	gi|410671098|ref|YP_006923469.1|	-	6e-08	32.5	0.2	7.4e-08	32.2	0.2	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|410671098|ref|YP_006923469.1|	-	1.2e-05	25.5	0.0	1.8e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	Integrase	core	domain
DDE_Tnp_ISAZ013	PF07592.11	gi|410671098|ref|YP_006923469.1|	-	0.0076	15.3	0.1	0.01	14.9	0.1	1.2	1	0	0	1	1	1	1	Rhodopirellula	transposase	DDE	domain
HTH_32	PF13565.6	gi|410671099|ref|YP_006923470.1|	-	1.1e-12	48.4	0.0	1.7e-12	47.8	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|410671099|ref|YP_006923470.1|	-	1e-08	35.1	0.0	2e-08	34.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_33	PF13592.6	gi|410671099|ref|YP_006923470.1|	-	2.2e-08	33.6	0.0	4.7e-08	32.6	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|410671099|ref|YP_006923470.1|	-	1.1e-06	28.2	0.1	4.9e-06	26.2	0.0	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|410671099|ref|YP_006923470.1|	-	0.00083	19.4	0.0	0.0019	18.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_ABP1_N	PF18107.1	gi|410671099|ref|YP_006923470.1|	-	0.0031	17.2	0.1	0.0053	16.4	0.1	1.3	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
SK_channel	PF03530.14	gi|410671100|ref|YP_006923471.1|	-	0.39	10.7	5.5	4.2	7.4	1.2	2.2	1	1	1	2	2	2	0	Calcium-activated	SK	potassium	channel
DUF5518	PF17647.1	gi|410671100|ref|YP_006923471.1|	-	0.39	10.9	8.4	0.16	12.1	2.3	2.5	2	1	1	3	3	3	0	Family	of	unknown	function	(DUF5518)
FtsH_ext	PF06480.15	gi|410671100|ref|YP_006923471.1|	-	0.99	9.8	3.5	0.83	10.0	0.1	2.5	2	1	1	3	3	3	0	FtsH	Extracellular
DUF4177	PF13783.6	gi|410671101|ref|YP_006923472.1|	-	6.4e-07	29.6	0.6	7.5e-07	29.4	0.6	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4177)
DUF2812	PF11193.8	gi|410671101|ref|YP_006923472.1|	-	0.059	13.6	0.2	0.06	13.6	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2812)
AbrB	PF05145.12	gi|410671102|ref|YP_006923473.1|	-	0.013	14.4	0.8	0.014	14.4	0.8	1.0	1	0	0	1	1	1	0	Transition	state	regulatory	protein	AbrB
DUF3894	PF13033.6	gi|410671102|ref|YP_006923473.1|	-	0.015	15.4	0.5	0.022	14.9	0.5	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3894)
Herpes_US9	PF06072.11	gi|410671102|ref|YP_006923473.1|	-	5.6	6.9	6.3	17	5.3	0.3	2.1	1	1	1	2	2	2	0	Alphaherpesvirus	tegument	protein	US9
DUF2154	PF09922.9	gi|410671103|ref|YP_006923474.1|	-	3.1e-09	36.7	0.4	4.5e-09	36.2	0.4	1.3	1	0	0	1	1	1	1	Cell	wall-active	antibiotics	response	4TMS	YvqF
Calmodulin_bind	PF07887.11	gi|410671103|ref|YP_006923474.1|	-	0.15	11.4	0.1	0.18	11.0	0.1	1.1	1	0	0	1	1	1	0	Calmodulin	binding	protein-like
LtrA	PF06772.11	gi|410671103|ref|YP_006923474.1|	-	1.2	8.3	9.3	1.7	7.8	9.3	1.1	1	0	0	1	1	1	0	Bacterial	low	temperature	requirement	A	protein	(LtrA)
AHSA1	PF08327.11	gi|410671104|ref|YP_006923475.1|	-	2.1e-07	31.2	0.9	2.8e-07	30.8	0.9	1.2	1	0	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
Polyketide_cyc2	PF10604.9	gi|410671104|ref|YP_006923475.1|	-	0.0063	16.8	0.2	0.022	15.1	0.2	1.9	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
DUF1724	PF08350.10	gi|410671105|ref|YP_006923476.1|	-	1.1e-23	83.2	0.3	2.2e-23	82.2	0.3	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
DUF285	PF03382.14	gi|410671105|ref|YP_006923476.1|	-	0.11	12.3	0.5	5.3	6.8	0.0	2.6	2	1	0	2	2	2	0	Mycoplasma	protein	of	unknown	function,	DUF285
HTH_45	PF14947.6	gi|410671105|ref|YP_006923476.1|	-	0.21	11.6	1.0	0.37	10.8	0.3	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix
DUF1724	PF08350.10	gi|410671108|ref|YP_006923479.1|	-	1e-17	64.0	0.3	2.7e-17	62.6	0.1	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1724)
PLDc_2	PF13091.6	gi|410671108|ref|YP_006923479.1|	-	0.084	12.8	0.0	0.14	12.0	0.0	1.3	1	0	0	1	1	1	0	PLD-like	domain
Peptidase_M24	PF00557.24	gi|410671111|ref|YP_006923482.1|	-	5.2e-48	163.5	0.8	6.8e-48	163.1	0.8	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Peptidase_M24	PF00557.24	gi|410671112|ref|YP_006923483.1|	-	4.2e-40	137.7	0.0	4.8e-40	137.5	0.0	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Neil1-DNA_bind	PF09292.10	gi|410671113|ref|YP_006923484.1|	-	0.056	13.4	0.0	0.13	12.3	0.0	1.6	1	0	0	1	1	1	0	Endonuclease	VIII-like	1,	DNA	bind
DUF1805	PF08827.11	gi|410671114|ref|YP_006923485.1|	-	1.2e-24	86.4	1.1	1.6e-24	86.0	1.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1805)
UPF0020	PF01170.18	gi|410671115|ref|YP_006923486.1|	-	4.7e-27	95.0	0.0	6.7e-26	91.2	0.0	2.1	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
THUMP	PF02926.17	gi|410671115|ref|YP_006923486.1|	-	1.3e-07	31.8	0.0	2.3e-07	31.0	0.0	1.4	1	0	0	1	1	1	1	THUMP	domain
N6_N4_Mtase	PF01555.18	gi|410671115|ref|YP_006923486.1|	-	3.7e-06	26.8	0.0	0.042	13.5	0.0	2.1	2	0	0	2	2	2	2	DNA	methylase
N6_Mtase	PF02384.16	gi|410671115|ref|YP_006923486.1|	-	5.6e-06	25.8	0.0	8.7e-06	25.2	0.0	1.3	1	0	0	1	1	1	1	N-6	DNA	Methylase
Cons_hypoth95	PF03602.15	gi|410671115|ref|YP_006923486.1|	-	0.0003	20.5	0.0	0.00044	19.9	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_11	PF08241.12	gi|410671115|ref|YP_006923486.1|	-	0.00056	20.5	0.0	0.0021	18.6	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|410671115|ref|YP_006923486.1|	-	0.0016	19.1	0.0	0.0054	17.4	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
DUF45	PF01863.17	gi|410671116|ref|YP_006923487.1|	-	1.9e-31	109.7	2.1	5.9e-29	101.6	0.4	2.0	1	1	1	2	2	2	2	Protein	of	unknown	function	DUF45
DUF4037	PF13228.6	gi|410671116|ref|YP_006923487.1|	-	0.043	14.6	0.0	0.084	13.7	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4037)
SprT-like	PF10263.9	gi|410671116|ref|YP_006923487.1|	-	0.084	12.7	0.8	0.16	11.9	0.6	1.7	1	1	0	1	1	1	0	SprT-like	family
PseudoU_synth_1	PF01416.20	gi|410671117|ref|YP_006923488.1|	-	1e-27	96.7	0.0	2.4e-23	82.7	0.0	2.3	2	0	0	2	2	2	2	tRNA	pseudouridine	synthase
HTH_20	PF12840.7	gi|410671118|ref|YP_006923489.1|	-	1.1e-09	38.2	0.0	2.2e-09	37.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF742	PF05331.11	gi|410671118|ref|YP_006923489.1|	-	0.00082	19.2	0.0	0.0013	18.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF742)
Dimerisation2	PF16864.5	gi|410671118|ref|YP_006923489.1|	-	0.0011	18.9	0.0	0.0044	17.0	0.0	1.8	2	0	0	2	2	2	1	Dimerisation	domain
TFIIE_alpha	PF02002.17	gi|410671118|ref|YP_006923489.1|	-	0.0021	17.9	0.4	0.0032	17.3	0.4	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_IclR	PF09339.10	gi|410671118|ref|YP_006923489.1|	-	0.0043	16.8	0.0	0.011	15.6	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|410671118|ref|YP_006923489.1|	-	0.0049	16.7	0.0	0.016	15.1	0.0	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|410671118|ref|YP_006923489.1|	-	0.0062	16.4	0.1	0.013	15.4	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|410671118|ref|YP_006923489.1|	-	0.019	14.5	0.0	0.04	13.5	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|410671118|ref|YP_006923489.1|	-	0.096	13.2	0.1	0.21	12.1	0.1	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_47	PF16221.5	gi|410671118|ref|YP_006923489.1|	-	0.14	11.7	0.1	0.24	11.0	0.1	1.3	1	0	0	1	1	1	0	winged	helix-turn-helix
DUF1297	PF06973.12	gi|410671119|ref|YP_006923490.1|	-	6.3e-55	185.6	0.0	8.8e-55	185.2	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1297)
DUF1246	PF06849.12	gi|410671119|ref|YP_006923490.1|	-	9.4e-44	148.3	0.0	1.5e-43	147.6	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1246)
ATP-grasp_3	PF02655.14	gi|410671119|ref|YP_006923490.1|	-	0.0012	18.9	0.1	0.0074	16.3	0.1	2.0	1	1	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|410671119|ref|YP_006923490.1|	-	0.072	12.6	0.0	0.12	11.8	0.0	1.3	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Pyr_redox_2	PF07992.14	gi|410671120|ref|YP_006923491.1|	-	8.4e-17	61.3	0.0	7.3e-08	32.0	0.0	3.2	3	0	0	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|410671120|ref|YP_006923491.1|	-	1.6e-12	47.3	0.9	1.8e-06	27.3	0.5	3.2	3	0	0	3	3	3	2	FAD	binding	domain
GIDA	PF01134.22	gi|410671120|ref|YP_006923491.1|	-	1e-11	44.6	0.3	0.00057	19.1	0.2	3.1	3	0	0	3	3	3	3	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|410671120|ref|YP_006923491.1|	-	3.1e-09	36.1	0.0	1.6e-06	27.1	0.0	2.2	2	0	0	2	2	2	2	HI0933-like	protein
DAO	PF01266.24	gi|410671120|ref|YP_006923491.1|	-	6e-09	35.9	0.5	6.3e-05	22.7	0.2	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|410671120|ref|YP_006923491.1|	-	7.4e-08	32.0	0.1	1.9e-06	27.4	0.0	2.3	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|410671120|ref|YP_006923491.1|	-	6.7e-07	29.4	0.2	4.2e-05	23.7	0.1	2.7	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.12	gi|410671120|ref|YP_006923491.1|	-	1.6e-05	24.2	0.1	0.00021	20.4	0.2	2.0	2	0	0	2	2	2	1	Lycopene	cyclase	protein
FAD_oxidored	PF12831.7	gi|410671120|ref|YP_006923491.1|	-	2e-05	24.1	0.5	0.00055	19.4	0.7	2.3	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|410671120|ref|YP_006923491.1|	-	5.9e-05	22.4	0.5	0.00027	20.3	0.1	2.0	2	0	0	2	2	2	1	Thi4	family
Pyr_redox_3	PF13738.6	gi|410671120|ref|YP_006923491.1|	-	0.00021	20.7	0.0	0.00043	19.6	0.0	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|410671120|ref|YP_006923491.1|	-	0.00022	21.7	0.1	0.88	10.2	0.0	2.7	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
TMP-TENI	PF02581.17	gi|410671120|ref|YP_006923491.1|	-	0.15	11.4	0.0	0.25	10.6	0.0	1.3	1	0	0	1	1	1	0	Thiamine	monophosphate	synthase
DUF98	PF01947.16	gi|410671121|ref|YP_006923492.1|	-	0.11	12.5	0.0	0.11	12.5	0.0	1.0	1	0	0	1	1	1	0	p-hydroxybenzoic	acid	synthase
DUF87	PF01935.17	gi|410671123|ref|YP_006923494.1|	-	2.6e-11	44.1	0.0	4.3e-11	43.3	0.0	1.4	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
AAA	PF00004.29	gi|410671123|ref|YP_006923494.1|	-	0.00089	19.7	0.0	0.83	10.1	0.0	2.5	3	0	0	3	3	3	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
FtsK_SpoIIIE	PF01580.18	gi|410671123|ref|YP_006923494.1|	-	0.0083	15.5	0.0	2.2	7.6	0.0	2.3	2	0	0	2	2	2	2	FtsK/SpoIIIE	family
AAA_14	PF13173.6	gi|410671123|ref|YP_006923494.1|	-	0.013	15.5	0.0	0.19	11.7	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
H_kinase_N	PF12282.8	gi|410671123|ref|YP_006923494.1|	-	0.025	14.6	0.0	0.42	10.6	0.0	2.7	2	1	1	3	3	3	0	Signal	transduction	histidine	kinase
Zeta_toxin	PF06414.12	gi|410671123|ref|YP_006923494.1|	-	0.035	13.4	0.0	0.072	12.4	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
Zot	PF05707.12	gi|410671123|ref|YP_006923494.1|	-	0.11	12.1	0.0	0.25	10.9	0.0	1.6	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
LAM_C	PF12544.8	gi|410671124|ref|YP_006923495.1|	-	6.9e-41	139.4	0.0	1.1e-40	138.7	0.0	1.3	1	0	0	1	1	1	1	Lysine-2,3-aminomutase
Radical_SAM	PF04055.21	gi|410671124|ref|YP_006923495.1|	-	2.7e-11	44.1	0.0	6.3e-11	42.9	0.0	1.6	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|410671124|ref|YP_006923495.1|	-	0.02	15.0	0.0	0.048	13.8	0.0	1.7	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|410671124|ref|YP_006923495.1|	-	0.079	13.2	0.1	0.26	11.5	0.0	1.9	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Acetyltransf_1	PF00583.25	gi|410671125|ref|YP_006923496.1|	-	8.2e-07	29.3	0.0	1.6e-06	28.3	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_9	PF13527.7	gi|410671125|ref|YP_006923496.1|	-	4.9e-05	23.4	0.0	8.6e-05	22.6	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
PanZ	PF12568.8	gi|410671125|ref|YP_006923496.1|	-	0.0027	17.4	0.0	0.0042	16.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain,	PanZ
Acetyltransf_10	PF13673.7	gi|410671125|ref|YP_006923496.1|	-	0.0053	16.7	0.0	0.0086	16.0	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|410671125|ref|YP_006923496.1|	-	0.011	16.1	0.0	0.019	15.4	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
HTH_24	PF13412.6	gi|410671126|ref|YP_006923497.1|	-	3.4e-15	55.3	0.4	3.4e-15	55.3	0.4	1.6	2	0	0	2	2	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|410671126|ref|YP_006923497.1|	-	7.2e-11	41.7	0.0	1.3e-10	41.0	0.0	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.7	gi|410671126|ref|YP_006923497.1|	-	4.4e-07	29.9	0.0	2.9e-06	27.3	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
AsnC_trans_reg	PF01037.21	gi|410671126|ref|YP_006923497.1|	-	1.7e-06	27.9	0.0	2.4e-06	27.4	0.0	1.2	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_11	PF08279.12	gi|410671126|ref|YP_006923497.1|	-	0.0001	22.2	0.4	0.00036	20.4	0.0	2.0	2	0	0	2	2	2	1	HTH	domain
HTH_27	PF13463.6	gi|410671126|ref|YP_006923497.1|	-	0.00035	21.0	0.1	0.035	14.6	0.0	2.3	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|410671126|ref|YP_006923497.1|	-	0.00066	19.6	0.0	0.0014	18.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
FaeA	PF04703.12	gi|410671126|ref|YP_006923497.1|	-	0.00087	19.6	0.0	0.0018	18.6	0.0	1.5	1	0	0	1	1	1	1	FaeA-like	protein
HTH_12	PF08461.10	gi|410671126|ref|YP_006923497.1|	-	0.00096	19.1	0.3	0.0028	17.6	0.3	1.8	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_IclR	PF09339.10	gi|410671126|ref|YP_006923497.1|	-	0.001	18.9	0.0	0.0018	18.0	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|410671126|ref|YP_006923497.1|	-	0.001	18.9	0.1	0.0018	18.1	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_30	PF13556.6	gi|410671126|ref|YP_006923497.1|	-	0.0018	18.0	0.0	0.0036	17.1	0.0	1.4	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
MarR_2	PF12802.7	gi|410671126|ref|YP_006923497.1|	-	0.0033	17.3	0.0	0.0051	16.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|410671126|ref|YP_006923497.1|	-	0.0036	17.6	0.2	0.0095	16.3	0.0	1.7	2	0	0	2	2	2	1	Transcriptional	regulator
LexA_DNA_bind	PF01726.16	gi|410671126|ref|YP_006923497.1|	-	0.011	15.5	0.1	0.029	14.1	0.0	1.7	2	0	0	2	2	2	0	LexA	DNA	binding	domain
GntR	PF00392.21	gi|410671126|ref|YP_006923497.1|	-	0.038	13.6	0.0	0.12	12.1	0.0	1.8	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_34	PF13601.6	gi|410671126|ref|YP_006923497.1|	-	0.042	14.0	0.0	0.081	13.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_Mga	PF08280.11	gi|410671126|ref|YP_006923497.1|	-	0.053	13.6	0.6	0.18	11.9	0.0	2.1	2	0	0	2	2	2	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_36	PF13730.6	gi|410671126|ref|YP_006923497.1|	-	0.078	12.9	0.4	0.23	11.4	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
FlaC_arch	PF05377.11	gi|410671126|ref|YP_006923497.1|	-	0.08	13.4	2.0	0.11	12.9	0.0	2.2	3	1	0	3	3	2	0	Flagella	accessory	protein	C	(FlaC)
HTH_41	PF14502.6	gi|410671126|ref|YP_006923497.1|	-	0.096	12.4	0.2	0.23	11.2	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|410671126|ref|YP_006923497.1|	-	0.1	12.4	0.0	0.26	11.1	0.0	1.6	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
RPA_C	PF08784.11	gi|410671126|ref|YP_006923497.1|	-	0.15	12.7	0.1	0.51	11.0	0.0	1.8	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
Aconitase_C	PF00694.19	gi|410671127|ref|YP_006923498.1|	-	5.5e-19	68.8	0.0	9.7e-19	68.0	0.1	1.5	1	1	0	1	1	1	1	Aconitase	C-terminal	domain
Aconitase_2_N	PF06434.13	gi|410671127|ref|YP_006923498.1|	-	0.0054	16.4	0.0	0.096	12.3	0.0	2.1	1	1	0	1	1	1	1	Aconitate	hydratase	2	N-terminus
Iso_dh	PF00180.20	gi|410671128|ref|YP_006923499.1|	-	4.4e-94	315.5	0.0	5.3e-94	315.2	0.0	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
BST2	PF16716.5	gi|410671129|ref|YP_006923500.1|	-	0.00034	21.1	3.0	0.00034	21.1	3.0	1.9	1	1	0	2	2	2	1	Bone	marrow	stromal	antigen	2
Arg_decarbox_C	PF17944.1	gi|410671129|ref|YP_006923500.1|	-	0.00037	21.0	1.4	0.0014	19.1	0.2	2.3	2	0	0	2	2	2	1	Arginine	decarboxylase	C-terminal	helical	extension
DUF3450	PF11932.8	gi|410671129|ref|YP_006923500.1|	-	0.0013	18.1	4.7	0.0014	17.9	4.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3450)
Fib_alpha	PF08702.10	gi|410671129|ref|YP_006923500.1|	-	0.0022	18.2	5.5	0.0025	18.0	5.5	1.0	1	0	0	1	1	1	1	Fibrinogen	alpha/beta	chain	family
Syntaxin-6_N	PF09177.11	gi|410671129|ref|YP_006923500.1|	-	0.0058	17.2	3.0	0.0081	16.7	3.0	1.2	1	0	0	1	1	1	1	Syntaxin	6,	N-terminal
SOGA	PF11365.8	gi|410671129|ref|YP_006923500.1|	-	0.008	17.3	4.9	0.01	17.0	4.9	1.1	1	0	0	1	1	1	1	Protein	SOGA
Halogen_Hydrol	PF10112.9	gi|410671129|ref|YP_006923500.1|	-	0.025	14.6	4.2	0.025	14.6	4.2	1.8	1	1	1	2	2	2	0	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
PSII_Pbs27	PF13326.6	gi|410671129|ref|YP_006923500.1|	-	0.035	14.4	0.2	0.12	12.7	0.0	2.0	1	1	1	2	2	2	0	Photosystem	II	Pbs27
V_ATPase_I	PF01496.19	gi|410671129|ref|YP_006923500.1|	-	0.051	11.5	6.0	0.056	11.4	6.0	1.0	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
FAM86	PF14904.6	gi|410671129|ref|YP_006923500.1|	-	0.052	13.6	0.9	0.11	12.6	0.7	1.7	1	1	0	1	1	1	0	Family	of	unknown	function
PIN_12	PF16289.5	gi|410671129|ref|YP_006923500.1|	-	0.067	13.7	3.5	0.079	13.4	3.5	1.2	1	0	0	1	1	1	0	PIN	domain
DASH_Duo1	PF08651.10	gi|410671129|ref|YP_006923500.1|	-	0.067	13.0	4.0	1.9	8.3	2.0	2.2	2	0	0	2	2	2	0	DASH	complex	subunit	Duo1
DUF2605	PF10792.9	gi|410671129|ref|YP_006923500.1|	-	0.069	13.1	1.5	0.099	12.6	1.4	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2605)
TMPIT	PF07851.13	gi|410671129|ref|YP_006923500.1|	-	0.075	12.3	5.6	0.082	12.1	5.6	1.0	1	0	0	1	1	1	0	TMPIT-like	protein
FlaC_arch	PF05377.11	gi|410671129|ref|YP_006923500.1|	-	0.11	12.8	6.3	0.68	10.4	1.6	2.3	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
Tropomyosin	PF00261.20	gi|410671129|ref|YP_006923500.1|	-	0.13	11.6	10.0	0.27	10.6	6.6	1.8	1	1	0	1	1	1	0	Tropomyosin
KASH_CCD	PF14662.6	gi|410671129|ref|YP_006923500.1|	-	0.18	11.6	9.4	0.25	11.2	9.4	1.3	1	1	0	1	1	1	0	Coiled-coil	region	of	CCDC155	or	KASH
Adaptin_binding	PF10199.9	gi|410671129|ref|YP_006923500.1|	-	0.2	12.3	7.1	0.22	12.1	2.7	2.0	1	1	1	2	2	2	0	Alpha	and	gamma	adaptin	binding	protein	p34
BLOC1_2	PF10046.9	gi|410671129|ref|YP_006923500.1|	-	0.21	11.9	8.1	0.99	9.8	8.1	1.9	1	1	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF4298	PF14131.6	gi|410671129|ref|YP_006923500.1|	-	0.26	11.3	6.4	0.26	11.3	1.7	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4298)
BRE1	PF08647.11	gi|410671129|ref|YP_006923500.1|	-	0.55	10.4	11.5	1.5	9.0	11.3	1.7	1	1	0	1	1	1	0	BRE1	E3	ubiquitin	ligase
TMF_TATA_bd	PF12325.8	gi|410671129|ref|YP_006923500.1|	-	1.8	8.8	12.2	3.1	8.0	5.7	2.1	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
PHM7_cyt	PF14703.6	gi|410671129|ref|YP_006923500.1|	-	1.9	8.7	8.4	5.1	7.3	8.4	1.8	1	1	0	1	1	1	0	Cytosolic	domain	of	10TM	putative	phosphate	transporter
DUF4200	PF13863.6	gi|410671129|ref|YP_006923500.1|	-	2.2	8.7	14.4	4.3	7.8	8.2	2.0	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
DivIC	PF04977.15	gi|410671129|ref|YP_006923500.1|	-	3.7	7.4	8.6	1.2	8.9	2.1	2.6	1	1	1	2	2	2	0	Septum	formation	initiator
AA_kinase	PF00696.28	gi|410671130|ref|YP_006923501.1|	-	4.7e-28	98.4	1.6	1e-27	97.3	1.6	1.5	1	1	0	1	1	1	1	Amino	acid	kinase	family
SKI	PF01202.22	gi|410671130|ref|YP_006923501.1|	-	0.072	13.2	0.1	0.2	11.8	0.0	1.9	1	1	1	2	2	2	0	Shikimate	kinase
ANF_receptor	PF01094.28	gi|410671130|ref|YP_006923501.1|	-	0.08	12.0	0.0	0.59	9.2	0.0	1.9	1	1	1	2	2	2	0	Receptor	family	ligand	binding	region
Semialdhyde_dhC	PF02774.18	gi|410671132|ref|YP_006923503.1|	-	3e-39	135.0	0.0	5.5e-39	134.1	0.0	1.4	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
Semialdhyde_dh	PF01118.24	gi|410671132|ref|YP_006923503.1|	-	4.3e-36	124.0	0.0	6.7e-36	123.4	0.0	1.3	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.22	gi|410671132|ref|YP_006923503.1|	-	0.00017	22.4	0.0	0.00029	21.6	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
DapB_N	PF01113.20	gi|410671132|ref|YP_006923503.1|	-	0.0072	16.4	0.0	0.012	15.7	0.0	1.4	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
DXP_reductoisom	PF02670.16	gi|410671132|ref|YP_006923503.1|	-	0.0091	16.7	0.0	0.023	15.4	0.0	1.7	1	0	0	1	1	1	1	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
Gp_dh_C	PF02800.20	gi|410671132|ref|YP_006923503.1|	-	0.039	13.5	0.0	0.12	12.0	0.0	1.7	2	0	0	2	2	2	0	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
NAD_binding_10	PF13460.6	gi|410671132|ref|YP_006923503.1|	-	0.1	12.5	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	NAD(P)H-binding
DUF4347	PF14252.6	gi|410671132|ref|YP_006923503.1|	-	0.2	11.5	0.0	0.31	10.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4347)
Fer4	PF00037.27	gi|410671133|ref|YP_006923504.1|	-	1.4e-16	59.5	20.8	2.3e-08	33.5	6.5	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|410671133|ref|YP_006923504.1|	-	1.4e-12	47.5	22.6	2e-09	37.4	12.3	1.5	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410671133|ref|YP_006923504.1|	-	9.3e-12	44.9	14.7	1.2e-11	44.5	14.7	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410671133|ref|YP_006923504.1|	-	1.5e-11	44.3	11.0	1.9e-11	43.9	11.0	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|410671133|ref|YP_006923504.1|	-	2e-11	44.3	12.5	3.1e-11	43.7	12.5	1.3	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410671133|ref|YP_006923504.1|	-	2.2e-10	41.3	11.0	5e-05	24.2	2.4	2.0	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_6	PF12837.7	gi|410671133|ref|YP_006923504.1|	-	3.8e-10	39.4	19.9	1.2e-05	25.1	6.8	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|410671133|ref|YP_006923504.1|	-	6e-10	38.8	13.6	5.9e-05	23.3	3.1	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|410671133|ref|YP_006923504.1|	-	6.9e-10	38.4	15.8	3.9e-05	23.5	4.5	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|410671133|ref|YP_006923504.1|	-	1.5e-06	28.7	18.0	0.001	19.8	4.7	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|410671133|ref|YP_006923504.1|	-	1.9e-06	28.3	11.8	0.003	18.0	1.2	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|410671133|ref|YP_006923504.1|	-	3.5e-06	27.4	12.9	0.0038	17.7	1.8	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|410671133|ref|YP_006923504.1|	-	0.00017	22.3	11.1	0.024	15.4	1.8	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|410671133|ref|YP_006923504.1|	-	0.00033	20.8	14.8	0.0018	18.5	3.2	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|410671133|ref|YP_006923504.1|	-	0.00037	21.0	16.8	0.52	10.9	16.8	2.5	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|410671133|ref|YP_006923504.1|	-	0.0013	19.4	14.1	0.27	12.0	14.1	2.5	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_11	PF13247.6	gi|410671133|ref|YP_006923504.1|	-	0.02	15.0	5.6	0.022	14.9	5.6	1.2	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Pilin_N	PF07790.11	gi|410671134|ref|YP_006923505.1|	-	3.8e-11	43.8	3.8	4e-11	43.7	1.8	1.9	2	0	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
Helicase_C_2	PF13307.6	gi|410671135|ref|YP_006923506.1|	-	7e-32	110.9	0.3	5.3e-31	108.1	0.0	2.3	2	1	0	2	2	2	1	Helicase	C-terminal	domain
DEAD_2	PF06733.15	gi|410671135|ref|YP_006923506.1|	-	3.7e-19	69.0	6.7	1.2e-18	67.3	6.7	1.8	1	1	0	1	1	1	1	DEAD_2
DEAD	PF00270.29	gi|410671135|ref|YP_006923506.1|	-	0.00013	21.8	0.4	0.076	12.8	0.1	3.1	3	0	0	3	3	3	2	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|410671135|ref|YP_006923506.1|	-	0.0003	20.8	5.0	0.16	11.9	5.0	2.4	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Zot	PF05707.12	gi|410671135|ref|YP_006923506.1|	-	0.0032	17.1	0.1	0.57	9.8	0.0	2.5	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
PhoH	PF02562.16	gi|410671135|ref|YP_006923506.1|	-	0.0047	16.4	0.4	0.062	12.7	0.0	2.3	2	0	0	2	2	2	1	PhoH-like	protein
AAA_34	PF13872.6	gi|410671135|ref|YP_006923506.1|	-	0.0058	15.6	0.1	0.0088	15.0	0.1	1.2	1	0	0	1	1	1	1	P-loop	containing	NTP	hydrolase	pore-1
DUF2075	PF09848.9	gi|410671135|ref|YP_006923506.1|	-	0.02	14.1	0.3	1.2	8.3	0.0	2.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
SNF2_N	PF00176.23	gi|410671135|ref|YP_006923506.1|	-	0.021	13.6	1.2	0.035	12.8	1.2	1.4	1	1	0	1	1	1	0	SNF2	family	N-terminal	domain
AAA	PF00004.29	gi|410671135|ref|YP_006923506.1|	-	0.027	14.9	1.2	8.1	6.9	0.1	3.3	4	0	0	4	4	4	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Spore_YtfJ	PF09579.10	gi|410671136|ref|YP_006923507.1|	-	3.3e-26	91.3	4.0	5.5e-26	90.5	4.0	1.3	1	0	0	1	1	1	1	Sporulation	protein	YtfJ	(Spore_YtfJ)
DUF2953	PF11167.8	gi|410671137|ref|YP_006923508.1|	-	3.4e-07	30.2	0.0	6.4e-07	29.3	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2953)
GHMP_kinases_C	PF08544.13	gi|410671138|ref|YP_006923509.1|	-	4.4e-09	36.6	0.0	9.3e-09	35.5	0.0	1.5	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
GHMP_kinases_N	PF00288.26	gi|410671138|ref|YP_006923509.1|	-	1.3e-05	25.3	2.3	2.9e-05	24.2	2.3	1.6	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
Nop	PF01798.18	gi|410671139|ref|YP_006923510.1|	-	7.5e-50	169.5	0.0	1.1e-49	169.0	0.0	1.2	1	0	0	1	1	1	1	snoRNA	binding	domain,	fibrillarin
Fibrillarin	PF01269.17	gi|410671140|ref|YP_006923511.1|	-	3.4e-88	294.6	0.0	4.2e-88	294.3	0.0	1.0	1	0	0	1	1	1	1	Fibrillarin
AAA_14	PF13173.6	gi|410671141|ref|YP_006923512.1|	-	3.1e-35	121.0	0.1	3.1e-35	121.0	0.1	2.3	2	1	0	2	2	2	1	AAA	domain
DUF4143	PF13635.6	gi|410671141|ref|YP_006923512.1|	-	3.2e-14	53.1	5.1	1.1e-13	51.4	0.7	2.7	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4143)
AAA_16	PF13191.6	gi|410671141|ref|YP_006923512.1|	-	0.00011	22.6	0.0	0.00026	21.4	0.0	1.6	2	0	0	2	2	2	1	AAA	ATPase	domain
ATPase_2	PF01637.18	gi|410671141|ref|YP_006923512.1|	-	0.0035	17.3	0.0	0.0035	17.3	0.0	2.9	2	2	1	3	3	3	1	ATPase	domain	predominantly	from	Archaea
AAA_18	PF13238.6	gi|410671141|ref|YP_006923512.1|	-	0.019	15.5	0.0	0.055	14.0	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|410671141|ref|YP_006923512.1|	-	0.033	14.1	0.0	0.086	12.7	0.0	1.7	1	0	0	1	1	1	0	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|410671141|ref|YP_006923512.1|	-	0.039	14.0	0.0	0.33	11.1	0.0	2.3	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_22	PF13401.6	gi|410671141|ref|YP_006923512.1|	-	0.075	13.3	0.0	0.93	9.8	0.0	2.5	1	1	1	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|410671141|ref|YP_006923512.1|	-	0.083	12.1	0.1	0.25	10.5	0.1	1.8	1	1	1	2	2	2	0	NB-ARC	domain
PIN	PF01850.21	gi|410671142|ref|YP_006923513.1|	-	2.7e-16	60.2	0.5	3.1e-16	60.0	0.5	1.1	1	0	0	1	1	1	1	PIN	domain
MazE_antitoxin	PF04014.18	gi|410671143|ref|YP_006923514.1|	-	0.0015	18.4	0.0	0.0023	17.8	0.0	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DUF4878	PF12870.7	gi|410671146|ref|YP_006923517.1|	-	1.4e-05	25.4	6.9	0.001	19.3	6.9	2.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4878)
MecA_N	PF05223.11	gi|410671146|ref|YP_006923517.1|	-	5.5e-05	23.4	2.0	7.5e-05	23.0	2.0	1.1	1	0	0	1	1	1	1	NTF2-like	N-terminal	transpeptidase	domain
DUF3828	PF12883.7	gi|410671146|ref|YP_006923517.1|	-	0.28	11.6	2.7	2	8.8	2.7	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3828)
CTP-dep_RFKase	PF01982.16	gi|410671147|ref|YP_006923518.1|	-	1e-46	157.9	0.0	1.6e-46	157.4	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
MarR	PF01047.22	gi|410671147|ref|YP_006923518.1|	-	0.0021	17.9	0.1	0.004	17.0	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|410671147|ref|YP_006923518.1|	-	0.028	14.4	1.1	0.065	13.2	0.1	2.1	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
RQC	PF09382.10	gi|410671147|ref|YP_006923518.1|	-	0.033	14.0	0.1	0.055	13.3	0.1	1.3	1	0	0	1	1	1	0	RQC	domain
MarR_2	PF12802.7	gi|410671147|ref|YP_006923518.1|	-	0.17	11.8	0.0	0.32	10.9	0.0	1.4	1	0	0	1	1	1	0	MarR	family
MazE_antitoxin	PF04014.18	gi|410671147|ref|YP_006923518.1|	-	0.19	11.7	0.7	4.5	7.3	0.2	2.7	3	0	0	3	3	3	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DHBP_synthase	PF00926.19	gi|410671148|ref|YP_006923519.1|	-	1.3e-58	197.7	0.0	1.6e-58	197.4	0.0	1.0	1	0	0	1	1	1	1	3,4-dihydroxy-2-butanone	4-phosphate	synthase
Fasciclin	PF02469.22	gi|410671150|ref|YP_006923521.1|	-	2.1e-27	95.8	0.0	2.6e-27	95.6	0.0	1.0	1	0	0	1	1	1	1	Fasciclin	domain
DUF211	PF02680.14	gi|410671150|ref|YP_006923521.1|	-	0.052	13.7	0.3	0.094	12.9	0.3	1.5	1	0	0	1	1	1	0	Uncharacterized	ArCR,	COG1888
ABC_tran	PF00005.27	gi|410671152|ref|YP_006923523.1|	-	8.5e-19	68.4	0.0	1.6e-18	67.5	0.0	1.5	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|410671152|ref|YP_006923523.1|	-	4.8e-08	33.2	0.0	5.9e-08	32.9	0.0	1.1	1	0	0	1	1	1	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|410671152|ref|YP_006923523.1|	-	0.0041	17.8	0.0	0.013	16.2	0.0	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4162)
SMC_N	PF02463.19	gi|410671152|ref|YP_006923523.1|	-	0.069	12.6	0.0	0.093	12.1	0.0	1.3	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|410671152|ref|YP_006923523.1|	-	0.15	11.7	0.0	0.23	11.1	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
FdtA	PF05523.11	gi|410671152|ref|YP_006923523.1|	-	0.16	11.7	0.0	0.28	10.9	0.0	1.4	1	0	0	1	1	1	0	WxcM-like,	C-terminal
ABC2_membrane	PF01061.24	gi|410671153|ref|YP_006923524.1|	-	1.2e-22	80.4	19.9	1.2e-22	80.4	19.9	1.6	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|410671153|ref|YP_006923524.1|	-	1.2e-09	37.8	28.6	1.7e-09	37.3	28.6	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
YrhC	PF14143.6	gi|410671154|ref|YP_006923525.1|	-	0.15	12.2	0.3	0.35	11.0	0.0	1.7	2	0	0	2	2	2	0	YrhC-like	protein
Lactamase_B_2	PF12706.7	gi|410671155|ref|YP_006923526.1|	-	4.7e-27	94.8	0.6	5.9e-27	94.5	0.6	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|410671155|ref|YP_006923526.1|	-	5.5e-19	69.0	1.4	7.9e-19	68.4	1.4	1.4	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.6	gi|410671155|ref|YP_006923526.1|	-	3.6e-05	23.7	0.5	7.9e-05	22.6	0.5	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
AAA	PF00004.29	gi|410671156|ref|YP_006923527.1|	-	2.7e-37	128.2	0.1	1.1e-36	126.2	0.0	2.1	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|410671156|ref|YP_006923527.1|	-	4.6e-08	32.7	0.0	1.1e-07	31.5	0.0	1.7	1	0	0	1	1	1	1	AAA+	lid	domain
AAA_5	PF07728.14	gi|410671156|ref|YP_006923527.1|	-	1.6e-05	24.9	0.0	5.4e-05	23.2	0.0	2.0	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
DUF815	PF05673.13	gi|410671156|ref|YP_006923527.1|	-	2.9e-05	23.4	0.0	6e-05	22.3	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_2	PF07724.14	gi|410671156|ref|YP_006923527.1|	-	4.2e-05	23.7	0.1	0.00016	21.8	0.0	2.0	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
AAA_16	PF13191.6	gi|410671156|ref|YP_006923527.1|	-	8e-05	23.1	0.2	0.038	14.4	0.0	2.7	2	1	0	3	3	3	1	AAA	ATPase	domain
RuvB_N	PF05496.12	gi|410671156|ref|YP_006923527.1|	-	8.8e-05	22.3	0.0	0.00019	21.2	0.0	1.7	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_33	PF13671.6	gi|410671156|ref|YP_006923527.1|	-	0.00018	21.7	0.0	0.00037	20.7	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|410671156|ref|YP_006923527.1|	-	0.00028	21.4	0.0	0.00066	20.2	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|410671156|ref|YP_006923527.1|	-	0.00042	20.1	0.0	0.00079	19.2	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_28	PF13521.6	gi|410671156|ref|YP_006923527.1|	-	0.00063	20.0	0.0	0.0013	19.0	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
TIP49	PF06068.13	gi|410671156|ref|YP_006923527.1|	-	0.0007	18.9	0.0	0.0018	17.6	0.0	1.6	1	0	0	1	1	1	1	TIP49	P-loop	domain
AAA_22	PF13401.6	gi|410671156|ref|YP_006923527.1|	-	0.0011	19.2	0.2	0.13	12.6	0.0	2.7	1	1	1	2	2	2	1	AAA	domain
Mg_chelatase	PF01078.21	gi|410671156|ref|YP_006923527.1|	-	0.0012	18.2	0.0	0.0029	17.0	0.0	1.7	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_24	PF13479.6	gi|410671156|ref|YP_006923527.1|	-	0.0033	17.2	0.0	0.0082	15.9	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|410671156|ref|YP_006923527.1|	-	0.0048	17.3	0.3	0.13	12.7	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
AAA_14	PF13173.6	gi|410671156|ref|YP_006923527.1|	-	0.011	15.8	0.0	0.1	12.6	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|410671156|ref|YP_006923527.1|	-	0.011	15.3	0.0	0.026	14.0	0.0	1.7	1	1	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_25	PF13481.6	gi|410671156|ref|YP_006923527.1|	-	0.023	14.2	0.1	0.42	10.2	0.0	2.3	1	1	1	2	2	2	0	AAA	domain
Sigma54_activat	PF00158.26	gi|410671156|ref|YP_006923527.1|	-	0.028	14.1	0.0	0.055	13.2	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
CPT	PF07931.12	gi|410671156|ref|YP_006923527.1|	-	0.033	14.0	0.0	0.081	12.8	0.0	1.7	2	0	0	2	2	1	0	Chloramphenicol	phosphotransferase-like	protein
PhoH	PF02562.16	gi|410671156|ref|YP_006923527.1|	-	0.056	12.9	0.0	0.21	11.0	0.0	1.9	2	0	0	2	2	2	0	PhoH-like	protein
RNA_helicase	PF00910.22	gi|410671156|ref|YP_006923527.1|	-	0.061	13.7	0.0	0.15	12.5	0.0	1.8	1	0	0	1	1	1	0	RNA	helicase
Bac_DnaA	PF00308.18	gi|410671156|ref|YP_006923527.1|	-	0.063	13.1	0.0	0.14	12.0	0.0	1.5	1	0	0	1	1	1	0	Bacterial	dnaA	protein
MMR_HSR1	PF01926.23	gi|410671156|ref|YP_006923527.1|	-	0.063	13.4	0.0	0.12	12.4	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
NACHT	PF05729.12	gi|410671156|ref|YP_006923527.1|	-	0.066	13.1	0.1	1.8	8.4	0.0	2.4	2	0	0	2	2	2	0	NACHT	domain
ABC_tran	PF00005.27	gi|410671156|ref|YP_006923527.1|	-	0.069	13.7	0.0	0.19	12.3	0.0	1.9	1	1	0	1	1	1	0	ABC	transporter
SKI	PF01202.22	gi|410671156|ref|YP_006923527.1|	-	0.074	13.2	0.0	0.17	12.0	0.0	1.6	1	0	0	1	1	1	0	Shikimate	kinase
MCM	PF00493.23	gi|410671156|ref|YP_006923527.1|	-	0.077	12.1	0.2	1.3	8.1	0.0	2.4	2	1	0	2	2	2	0	MCM	P-loop	domain
Roc	PF08477.13	gi|410671156|ref|YP_006923527.1|	-	0.077	13.2	0.0	0.24	11.6	0.0	1.9	2	0	0	2	2	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
PduV-EutP	PF10662.9	gi|410671156|ref|YP_006923527.1|	-	0.078	12.7	0.0	0.2	11.4	0.0	1.7	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
TsaE	PF02367.17	gi|410671156|ref|YP_006923527.1|	-	0.091	12.8	0.0	0.17	11.9	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
TniB	PF05621.11	gi|410671156|ref|YP_006923527.1|	-	0.091	12.2	0.0	13	5.1	0.0	2.3	2	0	0	2	2	2	0	Bacterial	TniB	protein
AAA_11	PF13086.6	gi|410671156|ref|YP_006923527.1|	-	0.13	12.0	0.0	0.27	11.0	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
PaaX	PF07848.12	gi|410671157|ref|YP_006923528.1|	-	0.05	13.8	0.0	0.091	13.0	0.0	1.4	1	0	0	1	1	1	0	PaaX-like	protein
XPA_N	PF01286.18	gi|410671157|ref|YP_006923528.1|	-	0.073	13.1	0.2	5.6	7.1	0.0	2.3	2	0	0	2	2	2	0	XPA	protein	N-terminal
zinc_ribbon_2	PF13240.6	gi|410671157|ref|YP_006923528.1|	-	0.073	12.8	1.8	4.1	7.2	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|410671157|ref|YP_006923528.1|	-	0.097	12.7	1.6	0.18	11.9	1.6	1.4	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
zf-ribbon_3	PF13248.6	gi|410671157|ref|YP_006923528.1|	-	0.11	11.9	2.0	9.8	5.7	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|410671157|ref|YP_006923528.1|	-	0.31	11.1	4.0	0.58	10.2	4.0	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|410671157|ref|YP_006923528.1|	-	1.6	8.9	6.1	8.8	6.5	6.1	2.1	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-ACC	PF17848.1	gi|410671157|ref|YP_006923528.1|	-	4	7.6	6.1	11	6.2	0.1	2.4	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Acetyltransf_1	PF00583.25	gi|410671158|ref|YP_006923529.1|	-	9.9e-20	70.9	0.0	1.2e-19	70.6	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|410671158|ref|YP_006923529.1|	-	6.9e-16	58.4	0.1	8.9e-16	58.0	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|410671158|ref|YP_006923529.1|	-	1.4e-15	57.5	0.2	2e-15	57.0	0.2	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|410671158|ref|YP_006923529.1|	-	2e-09	37.8	0.1	2.5e-09	37.4	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|410671158|ref|YP_006923529.1|	-	1e-06	28.6	0.0	1.6e-06	28.0	0.0	1.3	1	1	0	1	1	1	1	FR47-like	protein
Acetyltransf_3	PF13302.7	gi|410671158|ref|YP_006923529.1|	-	8.9e-06	26.4	0.0	1.1e-05	26.2	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|410671158|ref|YP_006923529.1|	-	5.2e-05	23.3	0.0	8.9e-05	22.5	0.0	1.4	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
PanZ	PF12568.8	gi|410671158|ref|YP_006923529.1|	-	0.00055	19.7	0.0	0.00067	19.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain,	PanZ
Acetyltransf_15	PF17013.5	gi|410671158|ref|YP_006923529.1|	-	0.00066	19.2	0.0	0.00091	18.7	0.0	1.1	1	0	0	1	1	1	1	Putative	acetyl-transferase
Acetyltransf_8	PF13523.6	gi|410671158|ref|YP_006923529.1|	-	0.0034	17.1	0.0	0.0047	16.6	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.6	gi|410671158|ref|YP_006923529.1|	-	0.0057	16.6	0.0	0.012	15.6	0.0	1.6	1	0	0	1	1	1	1	ESCO1/2	acetyl-transferase
Acetyltransf_9	PF13527.7	gi|410671158|ref|YP_006923529.1|	-	0.0083	16.2	0.0	0.03	14.4	0.0	1.9	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_18	PF18014.1	gi|410671158|ref|YP_006923529.1|	-	0.012	15.5	0.0	0.07	13.0	0.0	1.9	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|410671158|ref|YP_006923529.1|	-	0.023	14.8	0.0	0.031	14.4	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Prenyltransf	PF01255.19	gi|410671159|ref|YP_006923530.1|	-	3e-28	98.9	0.0	1.6e-25	90.0	0.0	2.1	1	1	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
MMR_HSR1_C	PF08438.10	gi|410671160|ref|YP_006923531.1|	-	4.9e-31	107.6	0.0	1.3e-30	106.2	0.0	1.7	2	0	0	2	2	2	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.23	gi|410671160|ref|YP_006923531.1|	-	1.9e-20	73.1	0.0	7.5e-20	71.1	0.0	2.0	1	1	1	2	2	2	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|410671160|ref|YP_006923531.1|	-	1.9e-15	56.7	0.1	1.1e-14	54.2	0.0	2.1	2	0	0	2	2	2	1	TGS	domain
FeoB_N	PF02421.18	gi|410671160|ref|YP_006923531.1|	-	2e-07	30.7	0.9	4e-07	29.7	0.0	2.0	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
YchF-GTPase_C	PF06071.13	gi|410671160|ref|YP_006923531.1|	-	0.019	15.1	0.1	0.098	12.9	0.1	2.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF933)
Methyltransf_25	PF13649.6	gi|410671162|ref|YP_006923532.1|	-	7.9e-10	39.3	0.0	1.2e-09	38.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410671162|ref|YP_006923532.1|	-	1.4e-09	38.5	0.0	2.1e-09	37.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|410671162|ref|YP_006923532.1|	-	0.0018	17.6	0.0	0.0032	16.9	0.0	1.4	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_PK	PF05891.12	gi|410671162|ref|YP_006923532.1|	-	0.034	13.7	0.0	0.05	13.1	0.0	1.2	1	0	0	1	1	1	0	AdoMet	dependent	proline	di-methyltransferase
UPF0020	PF01170.18	gi|410671162|ref|YP_006923532.1|	-	0.098	12.3	0.0	0.14	11.8	0.0	1.2	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
DNA_pol_alpha_N	PF12254.8	gi|410671163|ref|YP_006923534.1|	-	0.048	13.7	2.2	0.067	13.3	2.2	1.4	1	1	0	1	1	1	0	DNA	polymerase	alpha	subunit	p180	N	terminal
RibD_C	PF01872.17	gi|410671164|ref|YP_006923535.1|	-	9.7e-24	84.3	0.0	2.2e-23	83.2	0.0	1.5	1	1	0	1	1	1	1	RibD	C-terminal	domain
RdgC	PF04381.12	gi|410671165|ref|YP_006923536.1|	-	0.012	14.9	0.0	2.3	7.4	0.0	2.2	1	1	1	2	2	2	0	Putative	exonuclease,	RdgC
HEPN	PF05168.14	gi|410671165|ref|YP_006923536.1|	-	0.081	13.1	0.0	0.26	11.4	0.0	1.8	2	0	0	2	2	2	0	HEPN	domain
RVT_3	PF13456.6	gi|410671166|ref|YP_006923537.1|	-	1.8e-15	56.8	0.0	3.2e-15	56.0	0.0	1.4	1	0	0	1	1	1	1	Reverse	transcriptase-like
Cep57_MT_bd	PF06657.13	gi|410671166|ref|YP_006923537.1|	-	0.048	14.1	0.2	0.086	13.3	0.2	1.4	1	0	0	1	1	1	0	Centrosome	microtubule-binding	domain	of	Cep57
SdrD_B	PF17210.3	gi|410671167|ref|YP_006923538.1|	-	3.2e-32	111.1	0.5	4.1e-32	110.7	0.5	1.1	1	0	0	1	1	1	1	SdrD	B-like	domain
CarboxypepD_reg	PF13620.6	gi|410671167|ref|YP_006923538.1|	-	7e-06	26.2	0.2	1.5e-05	25.1	0.1	1.6	1	1	1	2	2	2	1	Carboxypeptidase	regulatory-like	domain
bMG3	PF11974.8	gi|410671167|ref|YP_006923538.1|	-	0.0016	18.4	0.0	0.0025	17.8	0.0	1.3	1	0	0	1	1	1	1	Bacterial	alpha-2-macroglobulin	MG3	domain
NPCBM_assoc	PF10633.9	gi|410671168|ref|YP_006923539.1|	-	3.5e-06	27.2	0.8	0.69	10.2	0.0	4.5	5	0	0	5	5	5	2	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF916	PF06030.12	gi|410671168|ref|YP_006923539.1|	-	1.8e-05	24.8	0.3	0.28	11.2	0.0	4.0	3	2	1	4	4	4	2	Bacterial	protein	of	unknown	function	(DUF916)
fn3_5	PF06280.12	gi|410671168|ref|YP_006923539.1|	-	0.00011	22.8	0.0	0.18	12.5	0.0	3.4	2	1	1	3	3	3	1	Fn3-like	domain
Monooxygenase_B	PF04744.12	gi|410671168|ref|YP_006923539.1|	-	0.0027	16.6	0.0	0.047	12.5	0.0	2.1	2	0	0	2	2	2	1	Monooxygenase	subunit	B	protein
Fn3-like	PF14310.6	gi|410671168|ref|YP_006923539.1|	-	0.049	13.7	0.1	1.1	9.4	0.0	2.9	2	1	1	3	3	3	0	Fibronectin	type	III-like	domain
DUF1573	PF07610.11	gi|410671168|ref|YP_006923539.1|	-	0.051	13.6	0.0	7.8	6.6	0.0	3.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1573)
SoxY	PF13501.6	gi|410671168|ref|YP_006923539.1|	-	0.087	13.0	0.0	0.3	11.3	0.0	1.9	1	0	0	1	1	1	0	Sulfur	oxidation	protein	SoxY
CARDB	PF07705.11	gi|410671168|ref|YP_006923539.1|	-	0.13	12.5	4.1	1.9	8.8	0.0	2.9	3	1	0	3	3	3	0	CARDB
CRISPR_Cas9_WED	PF18061.1	gi|410671170|ref|YP_006923541.1|	-	0.052	13.6	0.2	0.052	13.6	0.2	1.1	1	0	0	1	1	1	0	CRISPR-Cas9	WED	domain
DUF2550	PF10739.9	gi|410671171|ref|YP_006923542.1|	-	0.12	12.4	0.0	0.18	11.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2550)
Cpn60_TCP1	PF00118.24	gi|410671172|ref|YP_006923543.1|	-	1.4e-177	591.3	16.9	1.6e-177	591.1	16.9	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
BioY	PF02632.14	gi|410671174|ref|YP_006923545.1|	-	7.2e-42	142.6	23.1	7.2e-42	142.6	23.1	1.4	2	0	0	2	2	2	1	BioY	family
DUF2269	PF10027.9	gi|410671174|ref|YP_006923545.1|	-	0.032	14.3	2.6	0.032	14.3	2.6	2.4	2	2	0	2	2	2	0	Predicted	integral	membrane	protein	(DUF2269)
ABC_tran	PF00005.27	gi|410671175|ref|YP_006923546.1|	-	4.9e-25	88.6	0.0	6.4e-25	88.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|410671175|ref|YP_006923546.1|	-	9.1e-13	48.1	0.1	1e-11	44.7	0.1	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|410671175|ref|YP_006923546.1|	-	8.3e-09	35.7	0.5	0.0002	21.3	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|410671175|ref|YP_006923546.1|	-	2.3e-05	24.0	0.1	4.4e-05	23.1	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|410671175|ref|YP_006923546.1|	-	0.0003	21.2	0.0	0.00039	20.8	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
NTPase_1	PF03266.15	gi|410671175|ref|YP_006923546.1|	-	0.0031	17.4	0.2	0.46	10.4	0.0	2.2	2	0	0	2	2	2	1	NTPase
AAA_5	PF07728.14	gi|410671175|ref|YP_006923546.1|	-	0.011	15.7	0.1	0.48	10.4	0.0	2.5	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
MeaB	PF03308.16	gi|410671175|ref|YP_006923546.1|	-	0.016	14.2	0.0	0.028	13.4	0.0	1.4	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_23	PF13476.6	gi|410671175|ref|YP_006923546.1|	-	0.019	15.5	0.0	0.024	15.1	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|410671175|ref|YP_006923546.1|	-	0.02	14.2	0.1	0.07	12.4	0.0	1.8	2	0	0	2	2	2	0	Zeta	toxin
AAA_22	PF13401.6	gi|410671175|ref|YP_006923546.1|	-	0.02	15.2	0.0	0.092	13.0	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|410671175|ref|YP_006923546.1|	-	0.021	14.5	0.0	0.057	13.1	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|410671175|ref|YP_006923546.1|	-	0.022	14.3	0.5	0.33	10.5	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
ATPase	PF06745.13	gi|410671175|ref|YP_006923546.1|	-	0.065	12.6	0.1	5.3	6.3	0.0	2.1	2	0	0	2	2	2	0	KaiC
AAA_15	PF13175.6	gi|410671175|ref|YP_006923546.1|	-	0.087	12.5	0.0	0.12	12.1	0.0	1.1	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_14	PF13173.6	gi|410671175|ref|YP_006923546.1|	-	0.094	12.7	0.0	6.5	6.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
ATPase_2	PF01637.18	gi|410671175|ref|YP_006923546.1|	-	0.1	12.5	0.0	0.2	11.5	0.0	1.5	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
RsgA_GTPase	PF03193.16	gi|410671175|ref|YP_006923546.1|	-	0.11	12.4	0.1	0.21	11.5	0.1	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_27	PF13514.6	gi|410671175|ref|YP_006923546.1|	-	0.12	12.0	0.0	0.18	11.4	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|410671175|ref|YP_006923546.1|	-	0.17	11.8	0.0	0.31	11.0	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
TniB	PF05621.11	gi|410671175|ref|YP_006923546.1|	-	0.22	10.9	0.1	4.2	6.7	0.0	2.1	2	0	0	2	2	2	0	Bacterial	TniB	protein
ABC_tran	PF00005.27	gi|410671176|ref|YP_006923547.1|	-	1.6e-27	96.7	0.0	2.3e-27	96.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|410671176|ref|YP_006923547.1|	-	6.6e-08	32.7	1.2	1.3e-06	28.5	0.1	2.5	1	1	1	3	3	3	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|410671176|ref|YP_006923547.1|	-	4e-07	29.7	0.0	1.2e-06	28.2	0.0	1.7	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|410671176|ref|YP_006923547.1|	-	1e-05	26.0	0.1	2.6e-05	24.7	0.1	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|410671176|ref|YP_006923547.1|	-	0.00023	20.8	0.2	0.00043	20.0	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SbcCD_C	PF13558.6	gi|410671176|ref|YP_006923547.1|	-	0.0016	18.6	0.6	0.0077	16.4	0.0	2.3	2	1	0	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
NTPase_1	PF03266.15	gi|410671176|ref|YP_006923547.1|	-	0.013	15.4	0.5	0.026	14.5	0.1	1.6	2	0	0	2	2	2	0	NTPase
AAA_22	PF13401.6	gi|410671176|ref|YP_006923547.1|	-	0.031	14.5	0.1	0.19	12.0	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.12	gi|410671176|ref|YP_006923547.1|	-	0.035	13.4	0.1	0.06	12.6	0.1	1.3	1	0	0	1	1	1	0	Zeta	toxin
TsaE	PF02367.17	gi|410671176|ref|YP_006923547.1|	-	0.054	13.5	0.1	0.092	12.7	0.1	1.3	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_23	PF13476.6	gi|410671176|ref|YP_006923547.1|	-	0.069	13.7	0.1	0.11	13.0	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|410671176|ref|YP_006923547.1|	-	0.085	12.6	0.1	0.1	12.3	0.1	1.3	1	1	0	1	1	1	0	AAA	domain
ABC_ATPase	PF09818.9	gi|410671176|ref|YP_006923547.1|	-	0.094	11.5	0.2	1.2	7.9	0.0	2.0	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
NACHT	PF05729.12	gi|410671176|ref|YP_006923547.1|	-	0.11	12.4	0.1	0.25	11.2	0.1	1.6	1	0	0	1	1	1	0	NACHT	domain
ATPase	PF06745.13	gi|410671176|ref|YP_006923547.1|	-	0.13	11.6	0.1	0.27	10.6	0.1	1.6	2	0	0	2	2	2	0	KaiC
CbiQ	PF02361.16	gi|410671177|ref|YP_006923548.1|	-	7.8e-39	133.5	13.4	1e-38	133.1	13.4	1.1	1	0	0	1	1	1	1	Cobalt	transport	protein
HTH_5	PF01022.20	gi|410671178|ref|YP_006923549.1|	-	9.1e-15	54.3	1.2	1.8e-14	53.3	1.2	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|410671178|ref|YP_006923549.1|	-	1.4e-11	44.3	0.1	2.2e-11	43.7	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|410671178|ref|YP_006923549.1|	-	0.00014	21.6	0.0	0.00024	20.9	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|410671178|ref|YP_006923549.1|	-	0.0002	21.2	0.2	0.00033	20.5	0.2	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|410671178|ref|YP_006923549.1|	-	0.0036	16.8	0.4	0.0076	15.8	0.4	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_9	PF08221.11	gi|410671178|ref|YP_006923549.1|	-	0.005	16.9	0.7	0.01	15.9	0.7	1.4	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
MarR	PF01047.22	gi|410671178|ref|YP_006923549.1|	-	0.039	13.9	0.2	0.064	13.2	0.2	1.3	1	0	0	1	1	1	0	MarR	family
HTH_34	PF13601.6	gi|410671178|ref|YP_006923549.1|	-	0.041	14.1	0.0	0.058	13.6	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4423	PF14394.6	gi|410671178|ref|YP_006923549.1|	-	0.041	13.6	0.1	0.099	12.4	0.0	1.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4423)
HTH_1	PF00126.27	gi|410671178|ref|YP_006923549.1|	-	0.042	13.8	0.2	0.1	12.6	0.2	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Arg_repressor	PF01316.21	gi|410671178|ref|YP_006923549.1|	-	0.054	13.3	0.0	0.092	12.5	0.0	1.4	1	0	0	1	1	1	0	Arginine	repressor,	DNA	binding	domain
GntR	PF00392.21	gi|410671178|ref|YP_006923549.1|	-	0.1	12.3	0.2	0.8	9.4	0.1	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
Phage_RpbA	PF10789.9	gi|410671178|ref|YP_006923549.1|	-	0.1	12.6	0.0	0.16	12.1	0.0	1.3	1	0	0	1	1	1	0	Phage	RNA	polymerase	binding,	RpbA
HTH_27	PF13463.6	gi|410671178|ref|YP_006923549.1|	-	0.11	13.0	0.0	0.2	12.2	0.0	1.5	2	0	0	2	2	1	0	Winged	helix	DNA-binding	domain
HxlR	PF01638.17	gi|410671178|ref|YP_006923549.1|	-	0.12	12.2	0.1	0.17	11.8	0.1	1.3	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
ArsP_1	PF03773.13	gi|410671179|ref|YP_006923550.1|	-	2.6e-50	171.2	12.0	3.4e-50	170.9	12.0	1.1	1	0	0	1	1	1	1	Predicted	permease
TOBE	PF03459.17	gi|410671180|ref|YP_006923551.1|	-	2.2e-14	53.4	0.2	4.2e-14	52.6	0.2	1.5	1	0	0	1	1	1	1	TOBE	domain
HTH_1	PF00126.27	gi|410671180|ref|YP_006923551.1|	-	1e-09	38.2	0.0	2e-09	37.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
TOBE_2	PF08402.10	gi|410671180|ref|YP_006923551.1|	-	0.011	15.8	0.1	0.04	14.1	0.0	1.8	2	0	0	2	2	2	0	TOBE	domain
TOBE_3	PF12857.7	gi|410671180|ref|YP_006923551.1|	-	0.036	14.0	0.1	0.054	13.4	0.1	1.3	1	0	0	1	1	1	0	TOBE-like	domain
HTH_3	PF01381.22	gi|410671181|ref|YP_006923552.1|	-	2.9e-15	56.1	0.0	3.3e-15	55.9	0.0	1.0	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|410671181|ref|YP_006923552.1|	-	3.7e-07	30.4	0.0	4.2e-07	30.2	0.0	1.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|410671181|ref|YP_006923552.1|	-	6.9e-06	26.0	0.0	7.6e-06	25.9	0.0	1.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|410671181|ref|YP_006923552.1|	-	2.5e-05	24.6	0.0	2.8e-05	24.4	0.0	1.0	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|410671181|ref|YP_006923552.1|	-	0.0015	18.5	0.0	0.0024	17.8	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Phage_CI_repr	PF07022.13	gi|410671181|ref|YP_006923552.1|	-	0.0043	17.1	0.0	0.0048	17.0	0.0	1.1	1	0	0	1	1	1	1	Bacteriophage	CI	repressor	helix-turn-helix	domain
HTH_25	PF13413.6	gi|410671181|ref|YP_006923552.1|	-	0.019	14.8	0.0	0.027	14.3	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF2178	PF09946.9	gi|410671182|ref|YP_006923553.1|	-	0.0051	17.0	5.4	0.03	14.5	5.5	2.3	1	1	1	2	2	2	1	Predicted	membrane	protein	(DUF2178)
DUF3792	PF12670.7	gi|410671182|ref|YP_006923553.1|	-	0.07	13.3	8.0	0.67	10.1	1.8	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3792)
DUF2206	PF09971.9	gi|410671182|ref|YP_006923553.1|	-	0.14	10.9	8.1	0.61	8.8	0.2	2.0	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2206)
DUF3784	PF12650.7	gi|410671182|ref|YP_006923553.1|	-	6.3	7.1	11.3	0.29	11.3	0.9	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3784)
DUF4064	PF13273.6	gi|410671182|ref|YP_006923553.1|	-	6.8	7.0	12.7	55	4.1	7.8	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4064)
FMN_red	PF03358.15	gi|410671183|ref|YP_006923554.1|	-	1.4e-12	47.7	0.0	1.8e-12	47.3	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|410671183|ref|YP_006923554.1|	-	8e-05	22.4	0.0	0.0001	22.1	0.0	1.2	1	0	0	1	1	1	1	Flavodoxin-like	fold
Flavodoxin_1	PF00258.25	gi|410671183|ref|YP_006923554.1|	-	0.0021	18.3	0.2	0.0053	17.0	0.2	1.8	1	1	0	1	1	1	1	Flavodoxin
Flavodoxin_5	PF12724.7	gi|410671183|ref|YP_006923554.1|	-	0.026	14.8	0.0	2	8.7	0.0	2.2	1	1	1	2	2	2	0	Flavodoxin	domain
TED_complement	PF07678.14	gi|410671185|ref|YP_006923556.1|	-	4.8e-78	262.3	0.0	7.8e-78	261.6	0.0	1.3	1	0	0	1	1	1	1	A-macroglobulin	TED	domain
A2M	PF00207.22	gi|410671185|ref|YP_006923556.1|	-	8.8e-29	99.2	0.0	6.1e-28	96.5	0.0	2.6	2	0	0	2	2	2	1	Alpha-2-macroglobulin	family
A2M_BRD	PF07703.14	gi|410671185|ref|YP_006923556.1|	-	6.7e-25	88.1	5.8	1.7e-21	77.0	1.0	4.5	4	0	0	4	4	4	2	Alpha-2-macroglobulin	bait	region	domain
MG2	PF01835.19	gi|410671185|ref|YP_006923556.1|	-	2.2e-21	76.1	0.0	1.2e-15	57.8	0.0	4.3	4	0	0	4	4	3	2	MG2	domain
A2M_recep	PF07677.14	gi|410671185|ref|YP_006923556.1|	-	3.2e-19	69.4	0.4	4.8e-17	62.4	0.0	3.6	4	0	0	4	4	4	1	A-macroglobulin	receptor	binding	domain
MG4	PF17789.1	gi|410671185|ref|YP_006923556.1|	-	3.4e-13	49.6	0.2	1.6e-08	34.6	0.0	4.6	4	0	0	4	4	4	1	Macroglobulin	domain	MG4
MG3	PF17791.1	gi|410671185|ref|YP_006923556.1|	-	5.2e-13	49.1	0.1	1.6e-11	44.3	0.1	2.7	2	0	0	2	2	2	1	Macroglobulin	domain	MG3
SQHop_cyclase_C	PF13243.6	gi|410671185|ref|YP_006923556.1|	-	0.001	18.3	0.2	0.11	11.6	0.0	2.4	2	0	0	2	2	2	1	Squalene-hopene	cyclase	C-terminal	domain
Transglut_C	PF00927.22	gi|410671185|ref|YP_006923556.1|	-	0.031	14.4	0.1	0.19	11.9	0.0	2.4	2	0	0	2	2	2	0	Transglutaminase	family,	C-terminal	ig	like	domain
CarboxypepD_reg	PF13620.6	gi|410671185|ref|YP_006923556.1|	-	0.27	11.5	8.2	0.87	9.9	0.1	5.1	5	0	0	5	5	5	0	Carboxypeptidase	regulatory-like	domain
Prenyltrans	PF00432.21	gi|410671185|ref|YP_006923556.1|	-	0.44	10.3	1.8	1.6	8.5	0.0	2.8	3	0	0	3	3	3	0	Prenyltransferase	and	squalene	oxidase	repeat
fn3_3	PF14686.6	gi|410671185|ref|YP_006923556.1|	-	1.7	8.5	10.0	1.1	9.1	0.1	4.1	5	0	0	5	5	5	0	Polysaccharide	lyase	family	4,	domain	II
SBF	PF01758.16	gi|410671186|ref|YP_006923557.1|	-	9.3e-32	110.3	13.4	9.3e-32	110.3	13.4	1.9	2	1	0	2	2	2	1	Sodium	Bile	acid	symporter	family
SBF_like	PF13593.6	gi|410671186|ref|YP_006923557.1|	-	2.8e-14	53.2	20.3	4.6e-14	52.4	20.3	1.3	1	1	0	1	1	1	1	SBF-like	CPA	transporter	family	(DUF4137)
MutS_V	PF00488.21	gi|410671188|ref|YP_006923559.1|	-	1.3e-83	279.7	0.3	3e-83	278.5	0.3	1.6	1	0	0	1	1	1	1	MutS	domain	V
MutS_I	PF01624.20	gi|410671188|ref|YP_006923559.1|	-	2.3e-42	143.8	0.0	4.7e-42	142.8	0.0	1.6	1	0	0	1	1	1	1	MutS	domain	I
MutS_III	PF05192.18	gi|410671188|ref|YP_006923559.1|	-	2.6e-41	141.9	0.1	6.2e-41	140.7	0.1	1.7	1	0	0	1	1	1	1	MutS	domain	III
MutS_IV	PF05190.18	gi|410671188|ref|YP_006923559.1|	-	8.3e-31	106.2	0.5	1.9e-30	105.1	0.5	1.6	1	0	0	1	1	1	1	MutS	family	domain	IV
MutS_II	PF05188.17	gi|410671188|ref|YP_006923559.1|	-	2.5e-25	89.3	0.2	1.7e-24	86.6	0.0	2.2	2	0	0	2	2	2	1	MutS	domain	II
AAA_29	PF13555.6	gi|410671188|ref|YP_006923559.1|	-	0.0018	18.0	0.0	0.028	14.2	0.0	2.5	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_14	PF13173.6	gi|410671188|ref|YP_006923559.1|	-	0.0021	18.1	0.0	0.38	10.8	0.0	3.1	2	1	0	2	2	2	1	AAA	domain
AAA_27	PF13514.6	gi|410671188|ref|YP_006923559.1|	-	0.0026	17.4	0.0	0.0067	16.0	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.27	gi|410671188|ref|YP_006923559.1|	-	0.0049	17.4	0.1	0.25	11.9	0.0	3.3	3	2	0	3	3	3	1	ABC	transporter
ATPase_2	PF01637.18	gi|410671188|ref|YP_006923559.1|	-	0.012	15.6	0.0	1.8	8.4	0.0	2.6	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
RNA_helicase	PF00910.22	gi|410671188|ref|YP_006923559.1|	-	0.055	13.9	0.0	12	6.3	0.0	3.2	3	1	0	3	3	3	0	RNA	helicase
AAA_23	PF13476.6	gi|410671188|ref|YP_006923559.1|	-	0.077	13.5	0.1	0.29	11.6	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
MutL_C	PF08676.11	gi|410671190|ref|YP_006923561.1|	-	1.3e-37	128.8	0.0	2.1e-37	128.1	0.0	1.3	1	0	0	1	1	1	1	MutL	C	terminal	dimerisation	domain
DNA_mis_repair	PF01119.19	gi|410671190|ref|YP_006923561.1|	-	3.7e-37	126.6	0.0	6.2e-37	125.9	0.0	1.4	1	0	0	1	1	1	1	DNA	mismatch	repair	protein,	C-terminal	domain
HATPase_c_3	PF13589.6	gi|410671190|ref|YP_006923561.1|	-	7.4e-13	48.5	1.0	1.3e-12	47.7	1.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|410671190|ref|YP_006923561.1|	-	3.1e-08	34.1	0.2	8.2e-08	32.7	0.2	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
YokU	PF14122.6	gi|410671190|ref|YP_006923561.1|	-	0.1	12.6	0.0	0.28	11.2	0.0	1.7	1	0	0	1	1	1	0	YokU-like	protein,	putative	antitoxin
CbiD	PF01888.17	gi|410671191|ref|YP_006923562.1|	-	3.3e-52	177.3	3.1	4.7e-52	176.8	3.1	1.2	1	0	0	1	1	1	1	CbiD
DAO	PF01266.24	gi|410671191|ref|YP_006923562.1|	-	0.031	13.9	0.1	0.054	13.1	0.1	1.4	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
sCache_like	PF16736.5	gi|410671191|ref|YP_006923562.1|	-	0.034	14.2	0.0	0.16	12.0	0.0	2.1	2	0	0	2	2	2	0	Single	Cache-like
TP_methylase	PF00590.20	gi|410671192|ref|YP_006923563.1|	-	9e-19	68.3	0.2	3.3e-17	63.1	0.2	2.0	1	1	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
CbiM	PF01891.16	gi|410671193|ref|YP_006923564.1|	-	1.6e-54	184.9	21.3	1.8e-54	184.7	21.3	1.0	1	0	0	1	1	1	1	Cobalt	uptake	substrate-specific	transmembrane	region
CbiN	PF02553.15	gi|410671194|ref|YP_006923565.1|	-	8.3e-28	96.2	0.4	1.1e-27	95.8	0.4	1.1	1	0	0	1	1	1	1	Cobalt	transport	protein	component	CbiN
PsbI	PF02532.14	gi|410671194|ref|YP_006923565.1|	-	0.14	12.1	0.1	0.21	11.5	0.1	1.4	1	0	0	1	1	1	0	Photosystem	II	reaction	centre	I	protein	(PSII	4.8	kDa	protein)
CbiQ	PF02361.16	gi|410671195|ref|YP_006923566.1|	-	4.9e-40	137.5	9.2	6.7e-40	137.0	9.2	1.1	1	0	0	1	1	1	1	Cobalt	transport	protein
ABC_tran	PF00005.27	gi|410671196|ref|YP_006923567.1|	-	1.2e-31	110.1	0.0	1.9e-31	109.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|410671196|ref|YP_006923567.1|	-	5.3e-13	49.4	0.0	7.8e-07	29.2	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|410671196|ref|YP_006923567.1|	-	4.1e-07	29.7	0.0	1.4e-06	27.9	0.0	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|410671196|ref|YP_006923567.1|	-	0.0011	18.7	0.1	0.0021	17.7	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|410671196|ref|YP_006923567.1|	-	0.0012	18.6	0.0	0.0049	16.6	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|410671196|ref|YP_006923567.1|	-	0.01	16.3	0.0	0.018	15.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|410671196|ref|YP_006923567.1|	-	0.023	14.8	0.0	0.077	13.1	0.0	1.9	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_13	PF13166.6	gi|410671196|ref|YP_006923567.1|	-	0.03	13.0	0.0	2.5	6.6	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|410671196|ref|YP_006923567.1|	-	0.035	14.0	0.0	0.089	12.7	0.0	1.6	1	0	0	1	1	1	0	RsgA	GTPase
DLIC	PF05783.11	gi|410671196|ref|YP_006923567.1|	-	0.061	12.1	0.1	0.098	11.5	0.1	1.2	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
NicO	PF03824.16	gi|410671197|ref|YP_006923568.1|	-	1.4e-12	47.5	21.8	6.8e-10	38.7	8.5	2.2	1	1	1	2	2	2	2	High-affinity	nickel-transport	protein
DsbD_2	PF13386.6	gi|410671197|ref|YP_006923568.1|	-	6.7e-07	29.4	17.7	2.5e-05	24.3	12.2	3.0	1	1	1	2	2	2	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DsbD	PF02683.15	gi|410671197|ref|YP_006923568.1|	-	1.1e-05	25.5	15.3	1.1e-05	25.5	15.3	1.9	1	1	1	2	2	2	1	Cytochrome	C	biogenesis	protein	transmembrane	region
SfLAP	PF11139.8	gi|410671197|ref|YP_006923568.1|	-	0.19	11.2	15.1	0.99	8.8	5.0	2.2	2	0	0	2	2	2	0	Sap,	sulfolipid-1-addressing	protein
LysE	PF01810.18	gi|410671197|ref|YP_006923568.1|	-	0.31	10.5	9.5	1	8.8	9.5	1.9	1	1	0	1	1	1	0	LysE	type	translocator
DUF1129	PF06570.11	gi|410671197|ref|YP_006923568.1|	-	0.38	10.2	9.0	0.26	10.8	2.7	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1129)
RseC_MucC	PF04246.12	gi|410671197|ref|YP_006923568.1|	-	5.9	6.8	6.1	1.1	9.3	0.5	2.4	2	0	0	2	2	2	0	Positive	regulator	of	sigma(E),	RseC/MucC
AP_endonuc_2	PF01261.24	gi|410671198|ref|YP_006923569.1|	-	7.7e-14	51.6	0.0	9.9e-14	51.3	0.0	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Peptidase_A3	PF02160.15	gi|410671199|ref|YP_006923570.1|	-	0.03	13.8	0.1	0.036	13.6	0.1	1.1	1	0	0	1	1	1	0	Cauliflower	mosaic	virus	peptidase	(A3)
CTP_transf_like	PF01467.26	gi|410671200|ref|YP_006923571.1|	-	2.9e-09	37.2	0.0	3.4e-09	37.0	0.0	1.0	1	0	0	1	1	1	1	Cytidylyltransferase-like
FAD_syn	PF06574.12	gi|410671200|ref|YP_006923571.1|	-	0.0095	15.8	0.0	0.018	15.0	0.0	1.5	2	0	0	2	2	2	1	FAD	synthetase
DUF4570	PF15134.6	gi|410671200|ref|YP_006923571.1|	-	0.053	13.5	0.0	0.077	13.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4570)
Phage_Orf51	PF06194.11	gi|410671200|ref|YP_006923571.1|	-	0.13	12.3	0.0	0.23	11.5	0.0	1.4	1	0	0	1	1	1	0	Phage	Conserved	Open	Reading	Frame	51
Rad51	PF08423.11	gi|410671201|ref|YP_006923572.1|	-	1e-85	287.1	0.0	1.3e-85	286.8	0.0	1.0	1	0	0	1	1	1	1	Rad51
HHH_5	PF14520.6	gi|410671201|ref|YP_006923572.1|	-	5.5e-13	49.3	0.4	1.4e-12	48.0	0.4	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
RecA	PF00154.21	gi|410671201|ref|YP_006923572.1|	-	2.7e-10	40.2	0.0	4.9e-08	32.8	0.0	2.3	1	1	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
AAA_25	PF13481.6	gi|410671201|ref|YP_006923572.1|	-	1e-07	31.7	0.0	1.4e-07	31.3	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
ATPase	PF06745.13	gi|410671201|ref|YP_006923572.1|	-	5e-06	26.0	0.0	6.6e-06	25.6	0.0	1.3	1	0	0	1	1	1	1	KaiC
HHH_2	PF12826.7	gi|410671201|ref|YP_006923572.1|	-	8.4e-06	25.8	0.3	2e-05	24.6	0.3	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
DNA_pol_lambd_f	PF10391.9	gi|410671201|ref|YP_006923572.1|	-	0.00033	20.4	0.1	0.0013	18.5	0.0	2.0	2	0	0	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
HHH	PF00633.23	gi|410671201|ref|YP_006923572.1|	-	0.0011	18.7	0.4	0.25	11.3	0.4	2.5	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
AAA_24	PF13479.6	gi|410671201|ref|YP_006923572.1|	-	0.0028	17.4	0.0	0.0075	16.0	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
Cdd1	PF11731.8	gi|410671201|ref|YP_006923572.1|	-	0.004	17.4	0.0	0.026	14.8	0.0	2.1	1	1	1	2	2	2	1	Pathogenicity	locus
ATPase_2	PF01637.18	gi|410671201|ref|YP_006923572.1|	-	0.014	15.3	0.0	0.024	14.6	0.0	1.3	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
NACHT	PF05729.12	gi|410671201|ref|YP_006923572.1|	-	0.015	15.2	0.0	0.032	14.2	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_22	PF13401.6	gi|410671201|ref|YP_006923572.1|	-	0.018	15.3	0.1	0.041	14.2	0.1	1.7	1	0	0	1	1	1	0	AAA	domain
DUF4332	PF14229.6	gi|410671201|ref|YP_006923572.1|	-	0.02	15.2	0.2	0.091	13.0	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4332)
AAA	PF00004.29	gi|410671201|ref|YP_006923572.1|	-	0.063	13.7	0.0	0.26	11.7	0.0	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF2520	PF10728.9	gi|410671201|ref|YP_006923572.1|	-	0.082	12.7	0.0	0.17	11.7	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2520)
RNA_pol_RpbG	PF16992.5	gi|410671201|ref|YP_006923572.1|	-	0.087	12.9	0.0	0.16	12.0	0.0	1.4	1	0	0	1	1	1	0	DNA-directed	RNA	polymerase,	subunit	G
CobU	PF02283.16	gi|410671201|ref|YP_006923572.1|	-	0.11	12.0	0.1	0.87	9.1	0.1	2.1	1	1	0	1	1	1	0	Cobinamide	kinase	/	cobinamide	phosphate	guanyltransferase
AAA_18	PF13238.6	gi|410671201|ref|YP_006923572.1|	-	0.14	12.7	0.1	0.62	10.6	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
Hydrolase_3	PF08282.12	gi|410671202|ref|YP_006923573.1|	-	3.9e-33	115.3	5.9	6.9e-22	78.4	2.2	2.0	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|410671202|ref|YP_006923573.1|	-	1.1e-10	42.2	2.9	7.2e-06	26.4	0.0	3.1	2	1	1	3	3	3	3	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|410671202|ref|YP_006923573.1|	-	1.3e-08	34.7	0.1	6.8e-06	25.8	0.0	2.1	2	0	0	2	2	2	2	Sucrose-6F-phosphate	phosphohydrolase
HAD	PF12710.7	gi|410671202|ref|YP_006923573.1|	-	0.00023	21.6	5.0	0.056	13.8	0.0	3.2	2	1	1	3	3	3	2	haloacid	dehalogenase-like	hydrolase
PRC	PF05239.16	gi|410671203|ref|YP_006923574.1|	-	4.1e-12	46.0	0.2	4.9e-12	45.7	0.2	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
AAA	PF00004.29	gi|410671204|ref|YP_006923575.1|	-	7e-99	327.4	0.0	5.4e-49	166.0	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.18	gi|410671204|ref|YP_006923575.1|	-	5.5e-32	109.8	0.1	5.5e-32	109.8	0.1	2.3	3	0	0	3	3	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_lid_3	PF17862.1	gi|410671204|ref|YP_006923575.1|	-	5.4e-29	99.7	2.5	4.7e-16	58.3	0.2	3.3	3	0	0	3	3	3	2	AAA+	lid	domain
AAA_2	PF07724.14	gi|410671204|ref|YP_006923575.1|	-	1.6e-15	57.7	0.0	2.9e-07	30.7	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|410671204|ref|YP_006923575.1|	-	7.4e-14	51.8	0.0	5.2e-06	26.3	0.0	2.9	2	2	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_5	PF07728.14	gi|410671204|ref|YP_006923575.1|	-	8.7e-14	51.7	0.3	7.4e-06	26.0	0.0	3.6	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
CDC48_2	PF02933.17	gi|410671204|ref|YP_006923575.1|	-	2.3e-13	49.7	0.7	3.3e-12	46.0	0.4	2.6	2	1	1	3	3	3	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_16	PF13191.6	gi|410671204|ref|YP_006923575.1|	-	5e-11	43.3	0.0	0.00027	21.4	0.0	3.3	2	2	0	2	2	2	2	AAA	ATPase	domain
AAA_14	PF13173.6	gi|410671204|ref|YP_006923575.1|	-	7.2e-11	42.2	0.0	2.1e-05	24.6	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_22	PF13401.6	gi|410671204|ref|YP_006923575.1|	-	1.6e-10	41.4	0.1	0.0065	16.7	0.0	3.9	2	2	2	4	4	3	2	AAA	domain
TIP49	PF06068.13	gi|410671204|ref|YP_006923575.1|	-	1.1e-08	34.7	0.1	0.00052	19.3	0.0	3.0	3	0	0	3	3	3	2	TIP49	P-loop	domain
AAA_18	PF13238.6	gi|410671204|ref|YP_006923575.1|	-	2.1e-08	34.8	0.0	0.01	16.4	0.0	3.0	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|410671204|ref|YP_006923575.1|	-	2.9e-08	33.7	0.0	0.007	16.1	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_33	PF13671.6	gi|410671204|ref|YP_006923575.1|	-	8.3e-08	32.5	0.0	0.0057	16.8	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
Sigma54_activat	PF00158.26	gi|410671204|ref|YP_006923575.1|	-	4.5e-07	29.7	0.0	0.11	12.2	0.0	3.6	2	2	0	2	2	2	2	Sigma-54	interaction	domain
AAA_25	PF13481.6	gi|410671204|ref|YP_006923575.1|	-	6.3e-07	29.2	0.2	0.11	12.0	0.0	3.5	3	0	0	3	3	3	1	AAA	domain
Mg_chelatase	PF01078.21	gi|410671204|ref|YP_006923575.1|	-	1.2e-06	28.1	0.1	0.04	13.3	0.0	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_7	PF12775.7	gi|410671204|ref|YP_006923575.1|	-	1.4e-06	28.0	0.0	0.012	15.1	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
AAA_28	PF13521.6	gi|410671204|ref|YP_006923575.1|	-	6.1e-06	26.6	0.0	0.039	14.2	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
Zeta_toxin	PF06414.12	gi|410671204|ref|YP_006923575.1|	-	1.1e-05	24.8	0.0	0.14	11.4	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
PhoH	PF02562.16	gi|410671204|ref|YP_006923575.1|	-	2e-05	24.2	0.0	0.35	10.3	0.0	3.1	3	0	0	3	3	2	2	PhoH-like	protein
Vps4_C	PF09336.10	gi|410671204|ref|YP_006923575.1|	-	3e-05	23.9	0.1	0.022	14.7	0.0	2.8	2	0	0	2	2	2	1	Vps4	C	terminal	oligomerisation	domain
RNA_helicase	PF00910.22	gi|410671204|ref|YP_006923575.1|	-	4e-05	24.0	0.0	0.48	10.8	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
ABC_tran	PF00005.27	gi|410671204|ref|YP_006923575.1|	-	4.3e-05	24.0	0.0	0.52	10.8	0.0	2.7	2	0	0	2	2	2	2	ABC	transporter
AAA_24	PF13479.6	gi|410671204|ref|YP_006923575.1|	-	5.4e-05	23.0	0.0	0.24	11.1	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_3	PF07726.11	gi|410671204|ref|YP_006923575.1|	-	7.7e-05	22.6	0.0	0.19	11.6	0.0	2.7	2	1	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase	PF06745.13	gi|410671204|ref|YP_006923575.1|	-	0.00011	21.7	2.4	0.23	10.8	0.0	3.6	3	1	0	4	4	3	1	KaiC
DUF2075	PF09848.9	gi|410671204|ref|YP_006923575.1|	-	0.00011	21.6	0.0	0.36	10.0	0.0	2.2	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
AAA_17	PF13207.6	gi|410671204|ref|YP_006923575.1|	-	0.00015	22.2	0.0	1.1	9.7	0.0	3.5	3	0	0	3	3	3	1	AAA	domain
Bac_DnaA	PF00308.18	gi|410671204|ref|YP_006923575.1|	-	0.00018	21.4	0.0	0.081	12.7	0.0	3.0	2	1	1	3	3	3	1	Bacterial	dnaA	protein
ATP-synt_ab	PF00006.25	gi|410671204|ref|YP_006923575.1|	-	0.00022	20.9	0.0	0.42	10.2	0.0	2.4	2	0	0	2	2	2	2	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Parvo_NS1	PF01057.17	gi|410671204|ref|YP_006923575.1|	-	0.00025	20.2	0.1	0.41	9.7	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
DUF815	PF05673.13	gi|410671204|ref|YP_006923575.1|	-	0.00035	19.8	0.0	0.51	9.4	0.0	2.5	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
AAA_19	PF13245.6	gi|410671204|ref|YP_006923575.1|	-	0.00038	20.8	1.0	1.8	8.9	0.1	3.2	3	1	0	3	3	3	2	AAA	domain
Guanylate_kin	PF00625.21	gi|410671204|ref|YP_006923575.1|	-	0.00056	19.6	0.4	7.2	6.3	0.0	4.0	2	2	2	4	4	4	0	Guanylate	kinase
TsaE	PF02367.17	gi|410671204|ref|YP_006923575.1|	-	0.0008	19.4	0.0	1.5	8.9	0.0	2.7	2	1	0	2	2	2	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ATPase_2	PF01637.18	gi|410671204|ref|YP_006923575.1|	-	0.00082	19.4	0.2	0.53	10.2	0.0	3.4	2	2	1	3	3	3	1	ATPase	domain	predominantly	from	Archaea
NB-ARC	PF00931.22	gi|410671204|ref|YP_006923575.1|	-	0.0014	17.9	0.0	1.8	7.7	0.0	2.5	2	0	0	2	2	2	2	NB-ARC	domain
AAA_30	PF13604.6	gi|410671204|ref|YP_006923575.1|	-	0.0018	18.0	0.4	1.5	8.5	0.1	2.7	2	1	0	2	2	2	1	AAA	domain
Sigma54_activ_2	PF14532.6	gi|410671204|ref|YP_006923575.1|	-	0.0021	18.2	0.0	2.3	8.4	0.0	2.5	2	0	0	2	2	2	1	Sigma-54	interaction	domain
Viral_helicase1	PF01443.18	gi|410671204|ref|YP_006923575.1|	-	0.0021	17.8	0.0	0.3	10.8	0.0	2.5	3	0	0	3	3	2	1	Viral	(Superfamily	1)	RNA	helicase
AAA_11	PF13086.6	gi|410671204|ref|YP_006923575.1|	-	0.0038	17.1	0.0	1.8	8.3	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
NTPase_1	PF03266.15	gi|410671204|ref|YP_006923575.1|	-	0.0057	16.6	3.8	5.1	7.0	0.0	3.8	3	1	1	4	4	3	0	NTPase
TniB	PF05621.11	gi|410671204|ref|YP_006923575.1|	-	0.01	15.2	0.0	9.9	5.5	0.0	3.3	3	0	0	3	3	3	0	Bacterial	TniB	protein
ResIII	PF04851.15	gi|410671204|ref|YP_006923575.1|	-	0.016	15.2	0.0	8.8	6.3	0.0	2.5	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
IPT	PF01745.16	gi|410671204|ref|YP_006923575.1|	-	0.024	14.1	0.2	1.2	8.5	0.0	2.7	3	0	0	3	3	3	0	Isopentenyl	transferase
Cytidylate_kin	PF02224.18	gi|410671204|ref|YP_006923575.1|	-	0.027	14.2	0.1	8	6.1	0.0	2.4	2	0	0	2	2	2	0	Cytidylate	kinase
T2SSE	PF00437.20	gi|410671204|ref|YP_006923575.1|	-	0.032	13.3	0.0	3.4	6.6	0.0	2.4	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
NACHT	PF05729.12	gi|410671204|ref|YP_006923575.1|	-	0.039	13.9	0.0	16	5.3	0.0	3.0	3	0	0	3	3	2	0	NACHT	domain
SKI	PF01202.22	gi|410671204|ref|YP_006923575.1|	-	0.047	13.8	0.0	14	5.8	0.0	2.7	2	0	0	2	2	2	0	Shikimate	kinase
PduV-EutP	PF10662.9	gi|410671204|ref|YP_006923575.1|	-	0.05	13.3	0.0	10	5.8	0.0	2.6	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
Rad17	PF03215.15	gi|410671204|ref|YP_006923575.1|	-	0.062	13.2	0.0	2.9	7.8	0.0	2.6	2	1	0	2	2	2	0	Rad17	P-loop	domain
LID	PF17916.1	gi|410671204|ref|YP_006923575.1|	-	0.063	12.9	0.1	0.19	11.4	0.1	1.8	1	0	0	1	1	1	0	LIM	interaction	domain	(LID)
Cytidylate_kin2	PF13189.6	gi|410671204|ref|YP_006923575.1|	-	0.086	13.0	0.1	9.5	6.3	0.0	2.7	3	0	0	3	3	2	0	Cytidylate	kinase-like	family
MCM	PF00493.23	gi|410671204|ref|YP_006923575.1|	-	0.12	11.4	0.0	9.1	5.3	0.0	2.9	4	0	0	4	4	4	0	MCM	P-loop	domain
Hydin_ADK	PF17213.3	gi|410671204|ref|YP_006923575.1|	-	0.17	12.2	0.1	25	5.1	0.0	2.2	2	0	0	2	2	2	0	Hydin	Adenylate	kinase-like	domain
TRAM	PF01938.20	gi|410671205|ref|YP_006923576.1|	-	1.3e-16	60.3	0.8	1.5e-16	60.1	0.8	1.1	1	0	0	1	1	1	1	TRAM	domain
DUF378	PF04070.12	gi|410671206|ref|YP_006923577.1|	-	8.5e-27	92.8	7.9	9.7e-27	92.6	7.9	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF378)
AIRS_C	PF02769.22	gi|410671207|ref|YP_006923578.1|	-	1.8e-46	158.1	5.1	3.5e-32	111.7	0.2	2.5	2	1	0	2	2	2	2	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|410671207|ref|YP_006923578.1|	-	9.4e-45	151.2	0.5	2.6e-23	82.5	0.1	3.2	3	0	0	3	3	3	2	AIR	synthase	related	protein,	N-terminal	domain
FGAR-AT_linker	PF18072.1	gi|410671207|ref|YP_006923578.1|	-	1.1e-07	32.3	0.1	2.1e-07	31.4	0.1	1.5	1	0	0	1	1	1	1	Formylglycinamide	ribonucleotide	amidotransferase	linker	domain
HTH_ParB	PF17762.1	gi|410671207|ref|YP_006923578.1|	-	0.06	13.2	0.1	0.23	11.3	0.0	2.0	2	0	0	2	2	2	0	HTH	domain	found	in	ParB	protein
DUF192	PF02643.15	gi|410671208|ref|YP_006923579.1|	-	1e-19	70.5	0.0	1.1e-19	70.3	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
PDZ_6	PF17820.1	gi|410671208|ref|YP_006923579.1|	-	0.1	12.4	0.0	0.17	11.7	0.0	1.4	1	0	0	1	1	1	0	PDZ	domain
SUI1	PF01253.22	gi|410671209|ref|YP_006923580.1|	-	1.7e-20	73.3	0.1	2.2e-20	73.0	0.1	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
DTW	PF03942.15	gi|410671209|ref|YP_006923580.1|	-	0.049	13.3	1.1	0.061	13.0	1.1	1.2	1	0	0	1	1	1	0	DTW	domain
TAL_effector	PF03377.13	gi|410671209|ref|YP_006923580.1|	-	0.12	12.8	0.0	0.19	12.1	0.0	1.4	1	0	0	1	1	1	0	TAL	effector	repeat
Aminotran_5	PF00266.19	gi|410671210|ref|YP_006923581.1|	-	1.3e-87	294.1	0.0	1.6e-87	293.9	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|410671210|ref|YP_006923581.1|	-	3e-07	30.0	0.1	4.4e-07	29.5	0.1	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.17	gi|410671210|ref|YP_006923581.1|	-	5.8e-06	25.9	0.9	8.5e-06	25.3	0.9	1.1	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.20	gi|410671210|ref|YP_006923581.1|	-	0.067	11.7	0.4	0.11	11.0	0.1	1.5	2	0	0	2	2	2	0	Cys/Met	metabolism	PLP-dependent	enzyme
NifU_N	PF01592.16	gi|410671211|ref|YP_006923582.1|	-	1.1e-38	132.3	0.2	1.2e-38	132.1	0.2	1.0	1	0	0	1	1	1	1	NifU-like	N	terminal	domain
DUF1858	PF08984.11	gi|410671211|ref|YP_006923582.1|	-	0.04	14.1	0.2	0.24	11.6	0.2	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1858)
GCV_H	PF01597.19	gi|410671211|ref|YP_006923582.1|	-	0.061	13.2	0.9	0.29	11.0	0.9	1.9	1	1	0	1	1	1	0	Glycine	cleavage	H-protein
HTH_3	PF01381.22	gi|410671212|ref|YP_006923583.1|	-	4.1e-06	26.7	0.4	1.4e-05	25.1	0.4	1.8	2	0	0	2	2	2	1	Helix-turn-helix
Sigma70_r4	PF04545.16	gi|410671212|ref|YP_006923583.1|	-	6.8e-05	22.3	2.2	0.00014	21.3	0.2	2.3	3	0	0	3	3	3	1	Sigma-70,	region	4
HTH_23	PF13384.6	gi|410671212|ref|YP_006923583.1|	-	0.00022	20.9	0.4	0.0013	18.4	0.3	2.1	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_24	PF13412.6	gi|410671212|ref|YP_006923583.1|	-	0.00069	19.1	0.3	0.0014	18.1	0.3	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.12	gi|410671212|ref|YP_006923583.1|	-	0.0014	18.3	0.6	0.014	15.0	0.4	2.5	2	1	0	2	2	2	1	Sigma-70,	region	4
HTH_28	PF13518.6	gi|410671212|ref|YP_006923583.1|	-	0.0045	17.1	0.3	0.017	15.2	0.4	1.9	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|410671212|ref|YP_006923583.1|	-	0.0049	17.2	1.2	0.0088	16.4	1.3	1.6	1	1	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|410671212|ref|YP_006923583.1|	-	0.0059	16.5	0.2	0.011	15.6	0.2	1.4	1	0	0	1	1	1	1	MarR	family
HTH_37	PF13744.6	gi|410671212|ref|YP_006923583.1|	-	0.0087	16.0	0.1	0.014	15.4	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|410671212|ref|YP_006923583.1|	-	0.011	15.7	0.1	0.032	14.2	0.2	1.8	2	1	0	2	2	1	0	Crp-like	helix-turn-helix	domain
KORA	PF16509.5	gi|410671212|ref|YP_006923583.1|	-	0.015	15.6	0.1	0.022	15.0	0.1	1.5	1	0	0	1	1	1	0	TrfB	plasmid	transcriptional	repressor
HTH_29	PF13551.6	gi|410671212|ref|YP_006923583.1|	-	0.015	15.3	0.1	0.036	14.1	0.1	1.7	1	1	0	1	1	1	0	Winged	helix-turn	helix
HTH_17	PF12728.7	gi|410671212|ref|YP_006923583.1|	-	0.016	15.4	0.0	0.035	14.3	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|410671212|ref|YP_006923583.1|	-	0.044	13.7	0.1	0.21	11.5	0.0	2.0	2	0	0	2	2	2	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_5	PF01022.20	gi|410671212|ref|YP_006923583.1|	-	0.055	13.3	0.1	0.34	10.8	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_1	PF00126.27	gi|410671212|ref|YP_006923583.1|	-	0.069	13.1	0.1	0.11	12.5	0.1	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Cro	PF09048.10	gi|410671212|ref|YP_006923583.1|	-	0.077	13.1	0.1	0.12	12.4	0.1	1.3	1	0	0	1	1	1	0	Cro
UPF0175	PF03683.13	gi|410671212|ref|YP_006923583.1|	-	0.091	12.5	0.1	0.15	11.7	0.1	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0175)
HTH_8	PF02954.19	gi|410671212|ref|YP_006923583.1|	-	0.094	12.5	0.1	0.16	11.8	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
HTH_AsnC-type	PF13404.6	gi|410671212|ref|YP_006923583.1|	-	0.19	11.6	0.9	2.6	8.0	0.2	2.4	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
ASFV_p27	PF06556.11	gi|410671212|ref|YP_006923583.1|	-	0.22	11.6	0.0	12	6.0	0.0	2.4	1	1	2	3	3	3	0	IAP-like	protein	p27	C-terminus
Nre_N	PF04894.12	gi|410671213|ref|YP_006923584.1|	-	3.8e-105	351.6	0.0	5.6e-105	351.0	0.0	1.3	1	0	0	1	1	1	1	Archaeal	Nre,	N-terminal
Nre_C	PF04895.12	gi|410671213|ref|YP_006923584.1|	-	9e-41	138.2	0.1	1.5e-40	137.5	0.1	1.4	1	0	0	1	1	1	1	Archaeal	Nre,	C-terminal
PHO4	PF01384.20	gi|410671214|ref|YP_006923585.1|	-	8.7e-103	343.9	38.9	2.8e-102	342.3	38.9	1.7	1	1	0	1	1	1	1	Phosphate	transporter	family
PhoU_div	PF01865.16	gi|410671215|ref|YP_006923586.1|	-	1.1e-53	181.8	1.6	1.2e-53	181.6	1.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF47
PhoU	PF01895.19	gi|410671215|ref|YP_006923586.1|	-	9.8e-05	22.7	1.5	0.026	15.0	0.8	2.4	2	0	0	2	2	2	2	PhoU	domain
Amino_oxidase	PF01593.24	gi|410671216|ref|YP_006923587.1|	-	3.7e-18	66.0	0.0	1.2e-17	64.4	0.0	1.8	1	1	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|410671216|ref|YP_006923587.1|	-	9.9e-18	64.1	0.1	1.9e-17	63.3	0.1	1.4	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|410671216|ref|YP_006923587.1|	-	1.2e-10	41.6	0.7	4.1e-08	33.2	0.1	2.6	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|410671216|ref|YP_006923587.1|	-	1.1e-09	37.9	0.4	1.6e-07	30.7	0.1	2.9	3	0	0	3	3	3	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|410671216|ref|YP_006923587.1|	-	8.3e-08	32.0	0.0	1.5e-07	31.2	0.0	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|410671216|ref|YP_006923587.1|	-	4e-07	29.1	1.3	7.2e-06	25.0	0.1	2.6	2	1	1	3	3	3	1	HI0933-like	protein
GDI	PF00996.18	gi|410671216|ref|YP_006923587.1|	-	9.5e-06	24.4	0.4	5.1e-05	22.0	0.3	2.1	2	0	0	2	2	2	1	GDP	dissociation	inhibitor
Thi4	PF01946.17	gi|410671216|ref|YP_006923587.1|	-	1.2e-05	24.7	0.3	2.7e-05	23.5	0.1	1.6	2	0	0	2	2	2	1	Thi4	family
FAD_binding_3	PF01494.19	gi|410671216|ref|YP_006923587.1|	-	1.4e-05	24.5	0.3	3e-05	23.4	0.1	1.6	2	0	0	2	2	2	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|410671216|ref|YP_006923587.1|	-	1.8e-05	24.2	0.0	6.5e-05	22.3	0.0	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|410671216|ref|YP_006923587.1|	-	0.0013	18.0	0.7	0.024	13.9	0.1	2.7	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|410671216|ref|YP_006923587.1|	-	0.0014	19.1	1.4	0.0043	17.6	0.2	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|410671216|ref|YP_006923587.1|	-	0.0014	17.8	0.7	0.0036	16.4	0.0	2.0	3	0	0	3	3	3	1	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.12	gi|410671216|ref|YP_006923587.1|	-	0.0066	15.6	0.2	0.014	14.4	0.1	1.5	2	0	0	2	2	2	1	Lycopene	cyclase	protein
GMC_oxred_N	PF00732.19	gi|410671216|ref|YP_006923587.1|	-	0.01	15.3	0.1	0.43	9.9	0.0	2.2	2	0	0	2	2	2	0	GMC	oxidoreductase
ApbA	PF02558.16	gi|410671216|ref|YP_006923587.1|	-	0.15	11.7	0.3	0.32	10.6	0.2	1.6	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
Trp_halogenase	PF04820.14	gi|410671216|ref|YP_006923587.1|	-	0.16	10.8	0.1	0.26	10.1	0.1	1.3	1	0	0	1	1	1	0	Tryptophan	halogenase
SAICAR_synt	PF01259.18	gi|410671217|ref|YP_006923588.1|	-	1.7e-59	201.5	0.9	2e-59	201.2	0.9	1.1	1	0	0	1	1	1	1	SAICAR	synthetase
NikR_C	PF08753.11	gi|410671218|ref|YP_006923589.1|	-	1.1e-33	115.3	3.2	1.5e-33	114.8	3.2	1.2	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|410671218|ref|YP_006923589.1|	-	1.4e-09	37.6	0.0	2.5e-09	36.7	0.0	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
HicB_lk_antitox	PF15919.5	gi|410671218|ref|YP_006923589.1|	-	0.0026	17.9	0.1	0.0067	16.5	0.0	1.8	2	1	0	2	2	2	1	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
RHH_8	PF17723.1	gi|410671218|ref|YP_006923589.1|	-	0.027	14.7	0.0	0.044	14.0	0.0	1.4	1	1	0	1	1	1	0	Ribbon-Helix-Helix	transcriptional	regulator	family
HTH_5	PF01022.20	gi|410671219|ref|YP_006923590.1|	-	1.6e-13	50.2	0.9	2.4e-13	49.7	0.9	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|410671219|ref|YP_006923590.1|	-	3e-11	43.2	0.1	4.1e-11	42.8	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF4364	PF14277.6	gi|410671219|ref|YP_006923590.1|	-	0.00075	19.3	0.2	0.00099	18.9	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
DUF2513	PF10711.9	gi|410671219|ref|YP_006923590.1|	-	0.0012	19.2	0.1	0.0019	18.5	0.1	1.4	1	1	0	1	1	1	1	Hypothetical	protein	(DUF2513)
DUF505	PF04458.12	gi|410671219|ref|YP_006923590.1|	-	0.0043	15.5	0.2	0.0056	15.1	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
HTH_45	PF14947.6	gi|410671219|ref|YP_006923590.1|	-	0.0085	16.1	0.1	0.011	15.7	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
ArsR	PF09824.9	gi|410671219|ref|YP_006923590.1|	-	0.0086	15.7	0.0	0.013	15.2	0.0	1.2	1	0	0	1	1	1	1	ArsR	transcriptional	regulator
MarR_2	PF12802.7	gi|410671219|ref|YP_006923590.1|	-	0.033	14.1	0.0	0.048	13.6	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Rio2_N	PF09202.11	gi|410671219|ref|YP_006923590.1|	-	0.054	13.7	0.3	0.11	12.7	0.3	1.6	1	1	0	1	1	1	0	Rio2,	N-terminal
HTH_34	PF13601.6	gi|410671219|ref|YP_006923590.1|	-	0.12	12.6	0.1	0.17	12.1	0.1	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Hemerythrin	PF01814.23	gi|410671220|ref|YP_006923591.1|	-	1.9e-13	51.2	0.0	2.1e-13	51.0	0.0	1.0	1	0	0	1	1	1	1	Hemerythrin	HHE	cation	binding	domain
E1-E2_ATPase	PF00122.20	gi|410671221|ref|YP_006923592.1|	-	9.4e-56	188.2	1.4	9.4e-56	188.2	1.4	4.8	3	1	2	5	5	5	2	E1-E2	ATPase
Cation_ATPase_C	PF00689.21	gi|410671221|ref|YP_006923592.1|	-	1.9e-38	132.0	13.9	1.9e-38	132.0	13.9	2.5	3	0	0	3	3	3	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.26	gi|410671221|ref|YP_006923592.1|	-	4.6e-27	95.7	0.9	3.1e-25	89.7	0.9	2.6	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase	PF13246.6	gi|410671221|ref|YP_006923592.1|	-	2.1e-24	85.4	0.1	1.4e-23	82.7	0.0	2.2	2	0	0	2	2	2	1	Cation	transport	ATPase	(P-type)
Cation_ATPase_N	PF00690.26	gi|410671221|ref|YP_006923592.1|	-	1.7e-19	69.3	0.0	1.7e-19	69.3	0.0	2.5	2	0	0	2	2	2	1	Cation	transporter/ATPase,	N-terminus
Hydrolase_3	PF08282.12	gi|410671221|ref|YP_006923592.1|	-	1.8e-05	24.7	0.7	0.00075	19.3	0.6	2.4	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|410671221|ref|YP_006923592.1|	-	0.0045	17.4	0.1	0.043	14.2	0.1	2.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
PrgI	PF12666.7	gi|410671221|ref|YP_006923592.1|	-	0.041	14.6	0.6	0.041	14.6	0.6	4.5	4	1	1	5	5	5	0	PrgI	family	protein
FA_desaturase	PF00487.24	gi|410671221|ref|YP_006923592.1|	-	0.11	12.3	2.3	3.8	7.3	0.0	3.3	3	1	0	3	3	3	0	Fatty	acid	desaturase
DUF1761	PF08570.10	gi|410671221|ref|YP_006923592.1|	-	0.53	10.5	8.3	5.4	7.3	0.1	3.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1761)
PIG-F	PF06699.11	gi|410671221|ref|YP_006923592.1|	-	9.8	6.3	16.2	0.68	10.1	1.1	2.8	3	0	0	3	3	3	0	GPI	biosynthesis	protein	family	Pig-F
PfkB	PF00294.24	gi|410671222|ref|YP_006923593.1|	-	3.5e-27	95.5	0.0	4.2e-27	95.3	0.0	1.1	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Vinculin	PF01044.19	gi|410671222|ref|YP_006923593.1|	-	0.098	10.9	0.0	0.13	10.5	0.0	1.0	1	0	0	1	1	1	0	Vinculin	family
PAS_3	PF08447.12	gi|410671223|ref|YP_006923594.1|	-	7.7e-14	51.7	0.0	1.2e-13	51.1	0.0	1.4	1	0	0	1	1	1	1	PAS	fold
PAS	PF00989.25	gi|410671223|ref|YP_006923594.1|	-	0.00023	21.1	0.0	0.00029	20.8	0.0	1.2	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|410671223|ref|YP_006923594.1|	-	0.061	13.6	0.0	0.15	12.4	0.0	1.6	1	1	0	1	1	1	0	PAS	domain
DegV	PF02645.16	gi|410671223|ref|YP_006923594.1|	-	0.092	12.1	0.0	0.12	11.6	0.0	1.2	1	0	0	1	1	1	0	Uncharacterised	protein,	DegV	family	COG1307
PAS_6	PF08348.11	gi|410671223|ref|YP_006923594.1|	-	0.12	12.3	0.0	0.21	11.4	0.0	1.4	1	0	0	1	1	1	0	YheO-like	PAS	domain
PhosphMutase	PF10143.9	gi|410671223|ref|YP_006923594.1|	-	0.12	12.2	0.0	0.21	11.5	0.0	1.4	1	0	0	1	1	1	0	2,3-bisphosphoglycerate-independent	phosphoglycerate	mutase
FeThRed_B	PF02943.15	gi|410671224|ref|YP_006923595.1|	-	2.6e-16	59.5	2.5	2.8e-16	59.4	2.5	1.0	1	0	0	1	1	1	1	Ferredoxin	thioredoxin	reductase	catalytic	beta	chain
Flavodoxin_1	PF00258.25	gi|410671225|ref|YP_006923596.1|	-	1.4e-12	48.0	0.0	3e-12	47.0	0.0	1.6	1	0	0	1	1	1	1	Flavodoxin
Lactamase_B	PF00753.27	gi|410671225|ref|YP_006923596.1|	-	1.6e-09	38.1	0.0	2.4e-09	37.5	0.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Flavodoxin_5	PF12724.7	gi|410671225|ref|YP_006923596.1|	-	0.00061	20.0	0.0	0.0011	19.2	0.0	1.5	1	0	0	1	1	1	1	Flavodoxin	domain
Lactamase_B_2	PF12706.7	gi|410671225|ref|YP_006923596.1|	-	0.0018	17.8	0.0	0.0054	16.3	0.0	1.7	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Peripla_BP_6	PF13458.6	gi|410671225|ref|YP_006923596.1|	-	0.041	13.5	0.0	8	6.0	0.0	2.3	1	1	1	2	2	2	0	Periplasmic	binding	protein
Rubrerythrin	PF02915.17	gi|410671226|ref|YP_006923597.1|	-	7.8e-10	39.3	14.9	2.4e-09	37.7	14.6	1.8	1	1	0	1	1	1	1	Rubrerythrin
Ferritin_2	PF13668.6	gi|410671226|ref|YP_006923597.1|	-	9.3e-06	25.9	6.0	0.01	16.0	0.5	2.1	2	0	0	2	2	2	2	Ferritin-like	domain
DUF2383	PF09537.10	gi|410671226|ref|YP_006923597.1|	-	0.014	15.7	4.2	0.49	10.8	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2383)
MRF_C1	PF13887.6	gi|410671226|ref|YP_006923597.1|	-	0.062	12.5	0.3	0.13	11.4	0.3	1.6	1	0	0	1	1	1	0	Myelin	gene	regulatory	factor	-C-terminal	domain	1
Inos-1-P_synth	PF01658.17	gi|410671227|ref|YP_006923598.1|	-	1.2e-32	112.4	0.0	2.2e-32	111.5	0.0	1.4	1	0	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
DUF429	PF04250.13	gi|410671228|ref|YP_006923599.1|	-	0.002	18.0	0.0	0.0067	16.2	0.0	1.8	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF429)
Flavoprotein	PF02441.19	gi|410671229|ref|YP_006923600.1|	-	8e-19	67.9	0.0	1.1e-18	67.4	0.0	1.3	1	1	0	1	1	1	1	Flavoprotein
Phage_TTP_11	PF16460.5	gi|410671229|ref|YP_006923600.1|	-	0.076	12.9	0.2	2.1	8.2	0.0	2.1	1	1	1	2	2	2	0	Phage	tail	tube,	TTP,	lambda-like
NAD_binding_1	PF00175.21	gi|410671230|ref|YP_006923601.1|	-	1.1e-18	67.8	0.0	1.5e-18	67.4	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
FAD_binding_6	PF00970.24	gi|410671230|ref|YP_006923601.1|	-	5.8e-13	49.0	0.0	8.6e-13	48.5	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
NAD_binding_6	PF08030.12	gi|410671230|ref|YP_006923601.1|	-	0.00077	19.6	0.0	0.027	14.6	0.0	2.2	1	1	1	2	2	2	1	Ferric	reductase	NAD	binding	domain
FAD_binding_8	PF08022.12	gi|410671230|ref|YP_006923601.1|	-	0.0033	17.5	0.0	0.0063	16.6	0.0	1.5	1	0	0	1	1	1	1	FAD-binding	domain
FMN_red	PF03358.15	gi|410671231|ref|YP_006923602.1|	-	1.9e-30	105.7	0.0	2.5e-30	105.3	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|410671231|ref|YP_006923602.1|	-	0.0002	21.1	0.0	0.00031	20.5	0.0	1.3	1	0	0	1	1	1	1	Flavodoxin-like	fold
Fer4	PF00037.27	gi|410671232|ref|YP_006923603.1|	-	4.4e-15	54.8	15.0	1.3e-07	31.2	2.1	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|410671232|ref|YP_006923603.1|	-	7.9e-11	42.4	8.1	1.1e-10	42.0	8.1	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410671232|ref|YP_006923603.1|	-	2.4e-10	39.9	11.6	5.4e-05	23.0	4.5	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|410671232|ref|YP_006923603.1|	-	4.7e-09	36.2	24.3	7.7e-07	29.1	12.5	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410671232|ref|YP_006923603.1|	-	5.6e-09	36.0	8.0	7.4e-09	35.6	8.0	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410671232|ref|YP_006923603.1|	-	1.1e-08	34.8	13.3	0.0004	20.3	1.7	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410671232|ref|YP_006923603.1|	-	2.5e-08	33.9	10.7	3e-08	33.7	10.7	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410671232|ref|YP_006923603.1|	-	3.3e-08	34.4	9.7	0.0012	19.7	3.2	2.1	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|410671232|ref|YP_006923603.1|	-	2.7e-05	24.5	8.1	0.0063	16.9	1.5	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|410671232|ref|YP_006923603.1|	-	6.5e-05	23.6	11.8	0.019	15.7	11.8	2.3	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.6	gi|410671232|ref|YP_006923603.1|	-	0.0001	22.8	9.8	0.0068	16.9	2.2	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|410671232|ref|YP_006923603.1|	-	0.00015	22.5	12.6	0.078	14.0	4.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|410671232|ref|YP_006923603.1|	-	0.00045	21.0	4.8	0.2	12.5	0.5	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410671232|ref|YP_006923603.1|	-	0.0013	19.1	13.8	0.0013	19.1	4.3	2.4	2	1	0	2	2	2	1	4Fe-4S	binding	domain
ETF_QO	PF05187.13	gi|410671232|ref|YP_006923603.1|	-	0.0018	18.4	3.2	0.0019	18.3	3.2	1.0	1	0	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
C_LFY_FLO	PF17538.2	gi|410671232|ref|YP_006923603.1|	-	0.012	15.1	0.0	0.013	15.0	0.0	1.1	1	0	0	1	1	1	0	DNA	Binding	Domain	(C-terminal)	Leafy/Floricaula
Fer4_18	PF13746.6	gi|410671232|ref|YP_006923603.1|	-	0.017	15.3	12.0	0.91	9.7	11.9	2.0	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|410671232|ref|YP_006923603.1|	-	0.017	15.6	16.2	2.3	8.8	16.2	2.8	1	1	0	1	1	1	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
DUF5437	PF17505.2	gi|410671233|ref|YP_006923604.1|	-	0.16	12.1	0.2	0.38	10.8	0.0	1.7	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5437)
CMD	PF02627.20	gi|410671234|ref|YP_006923605.1|	-	7.1e-18	64.5	0.2	9e-18	64.1	0.2	1.1	1	0	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
PA26	PF04636.13	gi|410671234|ref|YP_006923605.1|	-	0.026	13.4	0.0	0.028	13.3	0.0	1.1	1	0	0	1	1	1	0	PA26	p53-induced	protein	(sestrin)
SapB_1	PF05184.15	gi|410671234|ref|YP_006923605.1|	-	0.29	11.2	2.0	1.1	9.4	2.0	2.0	1	1	0	1	1	1	0	Saposin-like	type	B,	region	1
DUF2180	PF09947.9	gi|410671235|ref|YP_006923606.1|	-	2e-23	82.2	6.7	2.2e-23	82.0	6.7	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2180)
zf-UBP_var	PF17807.1	gi|410671235|ref|YP_006923606.1|	-	0.0038	16.9	3.4	0.0038	16.9	3.4	1.5	2	0	0	2	2	2	1	Variant	UBP	zinc	finger
SOCS_box	PF07525.16	gi|410671235|ref|YP_006923606.1|	-	0.093	13.1	1.0	0.41	11.0	1.0	1.9	1	1	0	1	1	1	0	SOCS	box
Tnp_zf-ribbon_2	PF13842.6	gi|410671235|ref|YP_006923606.1|	-	0.61	10.9	7.2	0.25	12.2	3.1	1.9	2	0	0	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
DUF2180	PF09947.9	gi|410671236|ref|YP_006923607.1|	-	9.8e-28	95.9	12.4	1.2e-27	95.7	12.4	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2180)
zf-UBP_var	PF17807.1	gi|410671236|ref|YP_006923607.1|	-	0.021	14.5	1.3	0.021	14.5	1.3	1.6	1	1	0	1	1	1	0	Variant	UBP	zinc	finger
Transp_Tc5_C	PF04236.15	gi|410671236|ref|YP_006923607.1|	-	0.38	11.1	9.2	1.2	9.5	1.6	2.1	1	1	1	2	2	2	0	Tc5	transposase	C-terminal	domain
FYVE	PF01363.21	gi|410671236|ref|YP_006923607.1|	-	0.93	9.7	7.5	1.4	9.1	7.5	1.4	1	1	0	1	1	1	0	FYVE	zinc	finger
Tnp_zf-ribbon_2	PF13842.6	gi|410671236|ref|YP_006923607.1|	-	1.1	10.1	9.3	0.29	12.0	3.2	2.3	2	1	0	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
LIM	PF00412.22	gi|410671236|ref|YP_006923607.1|	-	5.8	7.2	10.4	7.3	6.9	0.9	2.7	1	1	2	3	3	3	0	LIM	domain
zf-AN1	PF01428.16	gi|410671236|ref|YP_006923607.1|	-	6.1	7.1	10.0	0.16	12.1	2.1	2.3	2	2	1	3	3	3	0	AN1-like	Zinc	finger
Bac_luciferase	PF00296.20	gi|410671238|ref|YP_006923609.1|	-	3.2e-63	214.1	0.0	3.9e-63	213.8	0.0	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
PHP	PF02811.19	gi|410671238|ref|YP_006923609.1|	-	0.073	13.4	0.0	0.087	13.1	0.0	1.3	1	0	0	1	1	1	0	PHP	domain
FrhB_FdhB_C	PF04432.13	gi|410671239|ref|YP_006923610.1|	-	4.3e-36	124.1	0.1	8.6e-36	123.1	0.1	1.5	1	0	0	1	1	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	C	terminus
FrhB_FdhB_N	PF04422.13	gi|410671239|ref|YP_006923610.1|	-	1.1e-14	54.3	0.1	2.1e-14	53.4	0.1	1.4	1	0	0	1	1	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	N-term
Fer4	PF00037.27	gi|410671239|ref|YP_006923610.1|	-	7.4e-08	31.9	20.7	1.5e-06	27.8	6.0	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|410671239|ref|YP_006923610.1|	-	7.9e-07	29.6	8.8	7.9e-07	29.6	8.8	2.2	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410671239|ref|YP_006923610.1|	-	2.1e-06	27.8	7.3	2.1e-06	27.8	7.3	2.2	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410671239|ref|YP_006923610.1|	-	1.3e-05	25.2	11.8	1.3e-05	25.2	11.8	2.5	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410671239|ref|YP_006923610.1|	-	0.0002	22.2	16.4	0.00077	20.3	11.9	2.9	2	1	1	3	3	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|410671239|ref|YP_006923610.1|	-	0.0002	21.3	17.6	0.00067	19.6	4.7	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410671239|ref|YP_006923610.1|	-	0.00027	21.0	17.1	0.0042	17.2	2.9	3.2	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410671239|ref|YP_006923610.1|	-	0.00072	19.5	5.1	0.00072	19.5	5.1	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|410671239|ref|YP_006923610.1|	-	0.0048	17.3	10.1	0.051	14.0	10.3	2.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410671239|ref|YP_006923610.1|	-	0.015	15.7	2.3	0.015	15.7	2.3	2.9	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|410671239|ref|YP_006923610.1|	-	0.054	14.2	10.7	2.5	8.9	3.9	2.9	2	1	0	2	2	2	0	4Fe-4S	single	cluster	domain
Phage-tail_2	PF09096.10	gi|410671239|ref|YP_006923610.1|	-	0.11	12.5	0.0	0.17	11.9	0.0	1.3	1	0	0	1	1	1	0	Baseplate	structural	protein,	domain	2
Fer4_13	PF13370.6	gi|410671239|ref|YP_006923610.1|	-	0.25	11.9	11.8	0.58	10.7	4.3	2.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_17	PF13534.6	gi|410671239|ref|YP_006923610.1|	-	0.39	11.3	14.4	0.2	12.2	9.7	2.6	2	1	1	3	3	2	0	4Fe-4S	dicluster	domain
CTP_transf_like	PF01467.26	gi|410671240|ref|YP_006923611.1|	-	4.2e-18	65.9	0.0	1.4e-17	64.2	0.0	1.8	1	1	0	1	1	1	1	Cytidylyltransferase-like
Citrate_ly_lig	PF08218.11	gi|410671240|ref|YP_006923611.1|	-	0.12	12.0	0.0	12	5.6	0.0	2.2	1	1	1	2	2	2	0	Citrate	lyase	ligase	C-terminal	domain
zf_CopZ	PF18423.1	gi|410671241|ref|YP_006923612.1|	-	4.9e-24	84.1	0.2	1.2e-23	82.8	0.2	1.7	1	0	0	1	1	1	1	Zinc	binding	domain
Fer2_BFD	PF04324.15	gi|410671241|ref|YP_006923612.1|	-	9e-05	22.7	1.3	9e-05	22.7	1.3	1.9	2	1	0	2	2	2	1	BFD-like	[2Fe-2S]	binding	domain
Methyltransf_31	PF13847.6	gi|410671242|ref|YP_006923613.1|	-	4.8e-38	130.3	0.1	1.1e-37	129.1	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|410671242|ref|YP_006923613.1|	-	9.5e-25	87.1	0.1	2e-24	86.1	0.1	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410671242|ref|YP_006923613.1|	-	2.2e-23	82.7	0.0	4.3e-23	81.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|410671242|ref|YP_006923613.1|	-	1.3e-17	63.9	0.5	2.5e-17	63.0	0.1	1.6	2	1	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|410671242|ref|YP_006923613.1|	-	5.9e-13	49.4	0.0	1.2e-12	48.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
HTH_5	PF01022.20	gi|410671242|ref|YP_006923613.1|	-	1.2e-11	44.3	0.1	9.6e-11	41.4	0.1	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
Methyltransf_23	PF13489.6	gi|410671242|ref|YP_006923613.1|	-	2.6e-11	43.6	0.0	5.3e-11	42.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|410671242|ref|YP_006923613.1|	-	1.7e-10	41.0	0.0	2.9e-10	40.3	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MTS	PF05175.14	gi|410671242|ref|YP_006923613.1|	-	1.2e-08	34.7	0.0	2e-08	33.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
HTH_20	PF12840.7	gi|410671242|ref|YP_006923613.1|	-	1.3e-08	34.8	0.0	2.5e-08	33.9	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
UPF0020	PF01170.18	gi|410671242|ref|YP_006923613.1|	-	9.6e-08	31.9	0.0	2.7e-07	30.5	0.0	1.7	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_32	PF13679.6	gi|410671242|ref|YP_006923613.1|	-	2.6e-06	27.5	0.1	8.5e-06	25.8	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
PrmA	PF06325.13	gi|410671242|ref|YP_006923613.1|	-	2.9e-06	26.9	0.1	4.7e-06	26.2	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
CMAS	PF02353.20	gi|410671242|ref|YP_006923613.1|	-	9.4e-06	25.1	0.0	1.5e-05	24.4	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_15	PF09445.10	gi|410671242|ref|YP_006923613.1|	-	4.4e-05	23.1	0.0	7.4e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_8	PF05148.15	gi|410671242|ref|YP_006923613.1|	-	0.00012	22.0	0.1	0.0004	20.3	0.1	1.9	1	1	0	1	1	1	1	Hypothetical	methyltransferase
FtsJ	PF01728.19	gi|410671242|ref|YP_006923613.1|	-	0.00021	21.4	0.1	0.00066	19.8	0.0	1.7	2	0	0	2	2	2	1	FtsJ-like	methyltransferase
Methyltransf_18	PF12847.7	gi|410671242|ref|YP_006923613.1|	-	0.00036	20.5	0.0	0.00093	19.2	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
GidB	PF02527.15	gi|410671242|ref|YP_006923613.1|	-	0.011	15.0	0.0	0.025	13.9	0.0	1.5	1	1	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
GCD14	PF08704.10	gi|410671242|ref|YP_006923613.1|	-	0.016	14.9	0.0	0.024	14.3	0.0	1.3	1	0	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
Methyltr_RsmB-F	PF01189.17	gi|410671242|ref|YP_006923613.1|	-	0.03	14.0	0.0	0.12	12.0	0.0	1.9	2	1	0	2	2	2	0	16S	rRNA	methyltransferase	RsmB/F
Methyltransf_4	PF02390.17	gi|410671242|ref|YP_006923613.1|	-	0.037	13.5	0.0	0.098	12.1	0.0	1.7	1	1	0	1	1	1	0	Putative	methyltransferase
Methyltransf_24	PF13578.6	gi|410671242|ref|YP_006923613.1|	-	0.055	14.5	0.0	0.12	13.4	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Met_10	PF02475.16	gi|410671242|ref|YP_006923613.1|	-	0.056	13.2	0.2	0.13	12.0	0.1	1.6	2	0	0	2	2	2	0	Met-10+	like-protein
Penicillinase_R	PF03965.16	gi|410671242|ref|YP_006923613.1|	-	0.064	13.6	0.0	0.13	12.7	0.0	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
GARS_C	PF02843.16	gi|410671242|ref|YP_006923613.1|	-	0.099	12.9	0.0	0.32	11.3	0.0	1.9	2	0	0	2	2	1	0	Phosphoribosylglycinamide	synthetase,	C	domain
tRNA-synt_1e	PF01406.19	gi|410671243|ref|YP_006923614.1|	-	1.1e-120	402.5	0.0	1.4e-120	402.2	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1g	PF09334.11	gi|410671243|ref|YP_006923614.1|	-	5.3e-19	68.2	0.1	8e-09	34.7	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
DALR_2	PF09190.11	gi|410671243|ref|YP_006923614.1|	-	9.9e-11	42.0	0.0	2.3e-10	40.8	0.0	1.6	1	0	0	1	1	1	1	DALR	domain
tRNA-synt_1f	PF01921.18	gi|410671243|ref|YP_006923614.1|	-	3.7e-10	39.3	0.1	1.8e-07	30.4	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(K)
tRNA-synt_1	PF00133.22	gi|410671243|ref|YP_006923614.1|	-	1.6e-09	36.6	0.0	5.7e-07	28.2	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1d	PF00750.19	gi|410671243|ref|YP_006923614.1|	-	0.043	12.8	0.0	0.098	11.6	0.0	1.6	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(R)
5TM-5TMR_LYT	PF07694.12	gi|410671245|ref|YP_006923616.1|	-	2.1e-26	92.4	16.5	3.4e-26	91.8	16.5	1.3	1	0	0	1	1	1	1	5TMR	of	5TMR-LYT
HATPase_c	PF02518.26	gi|410671245|ref|YP_006923616.1|	-	1.2e-18	67.7	0.0	3.5e-18	66.1	0.0	1.9	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|410671245|ref|YP_006923616.1|	-	1.8e-12	47.1	0.2	1.8e-12	47.1	0.2	2.6	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_2	PF13185.6	gi|410671245|ref|YP_006923616.1|	-	7.5e-11	42.5	0.0	1.5e-10	41.5	0.0	1.6	1	0	0	1	1	1	1	GAF	domain
PAS_4	PF08448.10	gi|410671245|ref|YP_006923616.1|	-	2.7e-09	37.2	0.0	7.4e-09	35.8	0.0	1.8	2	0	0	2	2	2	1	PAS	fold
GAF	PF01590.26	gi|410671245|ref|YP_006923616.1|	-	1.8e-06	28.6	0.0	9.8e-06	26.2	0.0	2.1	2	0	0	2	2	2	1	GAF	domain
PAS_9	PF13426.7	gi|410671245|ref|YP_006923616.1|	-	4.7e-05	23.6	0.0	0.00015	22.0	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
GAF_3	PF13492.6	gi|410671245|ref|YP_006923616.1|	-	0.0019	18.5	0.0	0.0036	17.6	0.0	1.4	1	0	0	1	1	1	1	GAF	domain
HATPase_c_5	PF14501.6	gi|410671245|ref|YP_006923616.1|	-	0.0067	16.3	0.0	0.018	14.9	0.0	1.7	1	0	0	1	1	1	1	GHKL	domain
DUF4635	PF15466.6	gi|410671245|ref|YP_006923616.1|	-	0.022	14.3	0.3	0.058	12.9	0.1	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4635)
RRF_GI	PF12614.8	gi|410671245|ref|YP_006923616.1|	-	0.12	12.6	0.3	0.24	11.6	0.3	1.4	1	0	0	1	1	1	0	Ribosome	recycling	factor
Response_reg	PF00072.24	gi|410671246|ref|YP_006923617.1|	-	1.3e-22	80.1	0.1	1.6e-22	79.8	0.1	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PfkB	PF00294.24	gi|410671246|ref|YP_006923617.1|	-	0.07	12.4	0.0	0.16	11.2	0.0	1.5	2	0	0	2	2	2	0	pfkB	family	carbohydrate	kinase
PAS_3	PF08447.12	gi|410671247|ref|YP_006923618.1|	-	1.5e-34	118.1	0.1	1.3e-19	70.3	0.0	2.6	2	0	0	2	2	2	2	PAS	fold
HATPase_c	PF02518.26	gi|410671247|ref|YP_006923618.1|	-	8.9e-33	113.1	0.1	2.4e-32	111.8	0.1	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|410671247|ref|YP_006923618.1|	-	2.1e-18	66.1	0.5	6.6e-17	61.3	0.0	2.8	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
Response_reg	PF00072.24	gi|410671247|ref|YP_006923618.1|	-	2.5e-16	59.8	0.0	4.3e-16	59.1	0.0	1.4	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_9	PF13426.7	gi|410671247|ref|YP_006923618.1|	-	1.8e-11	44.2	0.0	7.4e-07	29.4	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
PAS	PF00989.25	gi|410671247|ref|YP_006923618.1|	-	5.9e-11	42.4	0.0	3.3e-09	36.7	0.0	2.8	3	0	0	3	3	3	1	PAS	fold
PAS_4	PF08448.10	gi|410671247|ref|YP_006923618.1|	-	8.1e-08	32.5	0.0	1.2e-06	28.8	0.0	2.4	2	0	0	2	2	2	1	PAS	fold
PAS_11	PF14598.6	gi|410671247|ref|YP_006923618.1|	-	1.1e-07	31.9	0.0	0.0022	18.1	0.0	2.5	2	0	0	2	2	2	2	PAS	domain
PAS_8	PF13188.7	gi|410671247|ref|YP_006923618.1|	-	1.5e-05	24.9	0.1	0.006	16.6	0.1	2.6	2	0	0	2	2	2	1	PAS	domain
HATPase_c_3	PF13589.6	gi|410671247|ref|YP_006923618.1|	-	0.032	14.1	0.0	0.1	12.4	0.0	1.9	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.6	gi|410671247|ref|YP_006923618.1|	-	0.064	13.2	0.0	0.28	11.1	0.0	2.1	1	1	0	1	1	1	0	GHKL	domain
AAA_18	PF13238.6	gi|410671248|ref|YP_006923619.1|	-	1.5e-24	87.0	0.7	2.2e-24	86.4	0.7	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|410671248|ref|YP_006923619.1|	-	1.7e-05	25.0	0.9	0.082	13.1	0.1	2.5	1	1	2	3	3	3	2	AAA	domain
AAA_17	PF13207.6	gi|410671248|ref|YP_006923619.1|	-	0.00022	21.6	0.9	0.013	15.9	0.9	2.3	1	1	0	1	1	1	1	AAA	domain
dNK	PF01712.19	gi|410671248|ref|YP_006923619.1|	-	0.00024	21.0	1.5	0.068	13.0	0.2	2.2	1	1	0	2	2	2	2	Deoxynucleoside	kinase
AAA_28	PF13521.6	gi|410671248|ref|YP_006923619.1|	-	0.00074	19.8	4.7	0.0085	16.4	4.6	2.4	1	1	0	1	1	1	1	AAA	domain
KTI12	PF08433.10	gi|410671248|ref|YP_006923619.1|	-	0.0011	18.4	0.5	0.002	17.6	0.2	1.6	2	0	0	2	2	2	1	Chromatin	associated	protein	KTI12
Thymidylate_kin	PF02223.17	gi|410671248|ref|YP_006923619.1|	-	0.0023	17.6	1.5	0.19	11.4	0.2	2.2	1	1	1	2	2	2	2	Thymidylate	kinase
CoaE	PF01121.20	gi|410671248|ref|YP_006923619.1|	-	0.0027	17.4	1.9	0.062	13.0	0.0	2.6	1	1	0	2	2	2	1	Dephospho-CoA	kinase
AAA_5	PF07728.14	gi|410671248|ref|YP_006923619.1|	-	0.0051	16.8	0.1	0.014	15.4	0.1	1.8	1	1	1	2	2	2	1	AAA	domain	(dynein-related	subfamily)
SKI	PF01202.22	gi|410671248|ref|YP_006923619.1|	-	0.0054	16.9	0.6	0.5	10.5	0.6	2.2	1	1	0	1	1	1	1	Shikimate	kinase
AAA	PF00004.29	gi|410671248|ref|YP_006923619.1|	-	0.0097	16.3	0.3	0.02	15.3	0.3	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|410671248|ref|YP_006923619.1|	-	0.018	15.3	0.7	0.051	13.9	0.7	1.8	1	1	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|410671248|ref|YP_006923619.1|	-	0.043	14.3	0.2	0.067	13.7	0.2	1.5	1	1	0	1	1	1	0	ABC	transporter
MeaB	PF03308.16	gi|410671248|ref|YP_006923619.1|	-	0.081	11.9	0.3	0.24	10.4	0.2	1.7	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_16	PF13191.6	gi|410671248|ref|YP_006923619.1|	-	0.087	13.2	0.5	0.2	12.0	0.5	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
GATase	PF00117.28	gi|410671249|ref|YP_006923620.1|	-	6.2e-49	166.3	0.0	6.9e-49	166.2	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|410671249|ref|YP_006923620.1|	-	7.4e-22	78.2	0.1	1.3e-21	77.4	0.1	1.4	1	1	0	1	1	1	1	Peptidase	C26
Chorismate_bind	PF00425.18	gi|410671250|ref|YP_006923621.1|	-	1.2e-95	320.0	0.0	1.2e-93	313.5	0.0	2.4	2	0	0	2	2	2	2	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.13	gi|410671250|ref|YP_006923621.1|	-	2.2e-24	86.3	0.1	7.9e-23	81.2	0.0	2.5	2	0	0	2	2	2	1	Anthranilate	synthase	component	I,	N	terminal	region
PRAI	PF00697.22	gi|410671251|ref|YP_006923622.1|	-	1.4e-29	103.2	0.0	2.1e-29	102.7	0.0	1.2	1	0	0	1	1	1	1	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
His_biosynth	PF00977.21	gi|410671251|ref|YP_006923622.1|	-	0.0017	17.9	0.1	0.0054	16.2	0.1	1.7	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
FMN_dh	PF01070.18	gi|410671251|ref|YP_006923622.1|	-	0.039	13.0	0.0	0.93	8.4	0.0	2.1	1	1	1	2	2	2	0	FMN-dependent	dehydrogenase
TMP-TENI	PF02581.17	gi|410671251|ref|YP_006923622.1|	-	0.055	12.8	0.1	0.3	10.4	0.0	1.9	2	0	0	2	2	2	0	Thiamine	monophosphate	synthase
Glycos_transf_3	PF00591.21	gi|410671252|ref|YP_006923623.1|	-	1.4e-98	329.5	1.3	1.4e-98	329.5	1.3	1.4	2	0	0	2	2	2	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.17	gi|410671252|ref|YP_006923623.1|	-	6.3e-18	64.4	5.5	1.9e-17	62.9	4.0	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	family,	helical	bundle	domain
ArgoL2	PF16488.5	gi|410671252|ref|YP_006923623.1|	-	0.17	12.2	0.0	0.55	10.6	0.0	1.9	2	0	0	2	2	2	0	Argonaute	linker	2	domain
FeoC	PF09012.10	gi|410671253|ref|YP_006923624.1|	-	6.5e-06	26.1	0.3	8.5e-06	25.7	0.3	1.3	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
DUF2250	PF10007.9	gi|410671253|ref|YP_006923624.1|	-	0.014	15.5	0.2	0.11	12.7	0.2	2.0	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF1495	PF07381.11	gi|410671253|ref|YP_006923624.1|	-	0.019	14.7	0.1	0.69	9.8	0.1	2.2	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
DUF4423	PF14394.6	gi|410671253|ref|YP_006923624.1|	-	0.041	13.6	0.0	0.042	13.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_45	PF14947.6	gi|410671253|ref|YP_006923624.1|	-	0.048	13.6	0.7	5.4	7.1	0.1	2.1	2	0	0	2	2	2	0	Winged	helix-turn-helix
Borrelia_P13	PF05628.12	gi|410671254|ref|YP_006923625.1|	-	0.5	10.3	6.3	0.71	9.8	5.6	1.5	1	1	0	1	1	1	0	Borrelia	membrane	protein	P13
TssN	PF17555.2	gi|410671254|ref|YP_006923625.1|	-	0.85	9.0	5.9	1.2	8.4	5.9	1.2	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssN
DUF1700	PF08006.11	gi|410671254|ref|YP_006923625.1|	-	0.9	9.0	7.9	1.2	8.7	7.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1700)
DUF2407_C	PF13373.6	gi|410671254|ref|YP_006923625.1|	-	5.7	7.1	5.2	4	7.6	0.1	2.2	1	1	1	2	2	2	0	DUF2407	C-terminal	domain
FeoB_N	PF02421.18	gi|410671255|ref|YP_006923626.1|	-	5.1e-67	224.3	0.3	8.6e-67	223.5	0.3	1.4	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Gate	PF07670.14	gi|410671255|ref|YP_006923626.1|	-	1.6e-46	157.2	12.9	5.1e-30	104.0	2.5	2.7	2	0	0	2	2	2	2	Nucleoside	recognition
FeoB_C	PF07664.12	gi|410671255|ref|YP_006923626.1|	-	9.6e-22	76.4	0.3	9.6e-22	76.4	0.3	3.4	4	0	0	4	4	3	1	Ferrous	iron	transport	protein	B	C	terminus
MMR_HSR1	PF01926.23	gi|410671255|ref|YP_006923626.1|	-	1.3e-18	67.2	0.1	2.9e-18	66.0	0.1	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_Cyto	PF17910.1	gi|410671255|ref|YP_006923626.1|	-	3.1e-17	62.9	1.0	6.8e-17	61.8	1.0	1.6	1	0	0	1	1	1	1	FeoB	cytosolic	helical	domain
SRPRB	PF09439.10	gi|410671255|ref|YP_006923626.1|	-	2.9e-06	26.9	0.0	8.1e-06	25.4	0.0	1.7	1	1	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
AIG1	PF04548.16	gi|410671255|ref|YP_006923626.1|	-	0.00025	20.4	0.3	0.00049	19.5	0.0	1.5	2	0	0	2	2	2	1	AIG1	family
GTP_EFTU	PF00009.27	gi|410671255|ref|YP_006923626.1|	-	0.001	18.6	0.2	0.0036	16.9	0.2	1.9	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
DUF4014	PF13198.6	gi|410671255|ref|YP_006923626.1|	-	0.035	14.5	0.9	0.1	13.0	0.9	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4014)
RsgA_GTPase	PF03193.16	gi|410671255|ref|YP_006923626.1|	-	0.038	13.9	2.9	2.3	8.1	0.0	2.7	3	0	0	3	3	3	0	RsgA	GTPase
Dynamin_N	PF00350.23	gi|410671255|ref|YP_006923626.1|	-	0.75	9.8	2.2	20	5.2	0.0	2.5	3	0	0	3	3	3	0	Dynamin	family
EIID-AGA	PF03613.14	gi|410671255|ref|YP_006923626.1|	-	4.1	6.5	11.0	0.11	11.6	3.3	2.2	2	0	0	2	2	2	0	PTS	system	mannose/fructose/sorbose	family	IID	component
FeoA	PF04023.14	gi|410671256|ref|YP_006923627.1|	-	6.6e-16	58.3	0.1	7.2e-16	58.2	0.1	1.0	1	0	0	1	1	1	1	FeoA	domain
GATase_3	PF07685.14	gi|410671257|ref|YP_006923628.1|	-	2.4e-51	174.1	0.0	3.6e-51	173.6	0.0	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
CbiA	PF01656.23	gi|410671257|ref|YP_006923628.1|	-	7.3e-20	71.3	0.0	1.8e-19	70.0	0.0	1.6	2	1	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.6	gi|410671257|ref|YP_006923628.1|	-	7.8e-17	61.7	0.0	7.5e-16	58.5	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
GATase	PF00117.28	gi|410671257|ref|YP_006923628.1|	-	0.00043	20.1	0.0	0.00079	19.2	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
SNO	PF01174.19	gi|410671257|ref|YP_006923628.1|	-	0.0031	17.4	0.0	0.0057	16.5	0.0	1.5	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
Methyltransf_31	PF13847.6	gi|410671258|ref|YP_006923629.1|	-	1.9e-11	44.0	0.0	2.2e-11	43.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|410671258|ref|YP_006923629.1|	-	3.9e-09	36.3	0.0	6.1e-09	35.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|410671258|ref|YP_006923629.1|	-	1.3e-08	35.4	0.0	4e-08	33.8	0.0	1.8	1	1	1	2	2	2	1	Methyltransferase	domain
PrmA	PF06325.13	gi|410671258|ref|YP_006923629.1|	-	6.4e-08	32.3	0.1	1.4e-07	31.2	0.0	1.4	1	1	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_18	PF12847.7	gi|410671258|ref|YP_006923629.1|	-	1.7e-07	31.3	0.1	3.2e-07	30.4	0.1	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|410671258|ref|YP_006923629.1|	-	8.9e-07	29.6	0.1	2e-06	28.4	0.0	1.6	1	1	1	2	2	2	1	Methyltransferase	domain
PCMT	PF01135.19	gi|410671258|ref|YP_006923629.1|	-	1e-06	28.7	0.0	1.9e-06	27.8	0.0	1.4	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
UPF0020	PF01170.18	gi|410671258|ref|YP_006923629.1|	-	0.00011	21.9	0.1	0.00058	19.6	0.1	2.0	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
CMAS	PF02353.20	gi|410671258|ref|YP_006923629.1|	-	0.00012	21.5	0.0	0.00017	21.0	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
DOT1	PF08123.13	gi|410671258|ref|YP_006923629.1|	-	0.00014	21.5	0.1	0.00024	20.7	0.0	1.4	2	0	0	2	2	2	1	Histone	methylation	protein	DOT1
Methyltransf_4	PF02390.17	gi|410671258|ref|YP_006923629.1|	-	0.00019	20.9	0.0	0.00033	20.2	0.0	1.4	1	0	0	1	1	1	1	Putative	methyltransferase
Ubie_methyltran	PF01209.18	gi|410671258|ref|YP_006923629.1|	-	0.00047	19.5	0.1	0.0006	19.2	0.1	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Cons_hypoth95	PF03602.15	gi|410671258|ref|YP_006923629.1|	-	0.00089	18.9	0.1	0.0013	18.4	0.1	1.4	1	1	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_11	PF08241.12	gi|410671258|ref|YP_006923629.1|	-	0.0012	19.5	0.0	0.0022	18.6	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
GCD14	PF08704.10	gi|410671258|ref|YP_006923629.1|	-	0.0019	17.9	0.1	0.0037	17.0	0.1	1.5	1	1	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
N6_Mtase	PF02384.16	gi|410671258|ref|YP_006923629.1|	-	0.004	16.4	0.2	0.017	14.4	0.0	1.8	2	0	0	2	2	2	1	N-6	DNA	Methylase
Methyltransf_23	PF13489.6	gi|410671258|ref|YP_006923629.1|	-	0.0055	16.6	0.0	0.0062	16.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_5	PF01795.19	gi|410671258|ref|YP_006923629.1|	-	0.0061	16.1	0.0	0.011	15.2	0.0	1.4	1	0	0	1	1	1	1	MraW	methylase	family
Methyltransf_15	PF09445.10	gi|410671258|ref|YP_006923629.1|	-	0.0074	15.9	0.1	0.014	15.0	0.0	1.3	1	1	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
FtsJ	PF01728.19	gi|410671258|ref|YP_006923629.1|	-	0.021	15.0	0.0	0.028	14.5	0.0	1.2	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
Methyltransf_24	PF13578.6	gi|410671258|ref|YP_006923629.1|	-	0.028	15.5	0.0	0.042	14.9	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_32	PF13679.6	gi|410671258|ref|YP_006923629.1|	-	0.028	14.4	0.0	0.046	13.7	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
RrnaAD	PF00398.20	gi|410671258|ref|YP_006923629.1|	-	0.033	13.3	0.0	0.12	11.4	0.0	1.7	2	0	0	2	2	2	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_2	PF00891.18	gi|410671258|ref|YP_006923629.1|	-	0.051	12.9	0.0	0.076	12.3	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase	domain
Methyltransf_8	PF05148.15	gi|410671258|ref|YP_006923629.1|	-	0.079	12.8	0.1	0.15	11.8	0.1	1.8	1	1	0	1	1	1	0	Hypothetical	methyltransferase
TP_methylase	PF00590.20	gi|410671259|ref|YP_006923630.1|	-	2.1e-29	103.0	0.0	2.8e-29	102.6	0.0	1.3	1	1	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
TP_methylase	PF00590.20	gi|410671260|ref|YP_006923631.1|	-	9.1e-48	163.0	0.1	1e-47	162.8	0.1	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Radical_SAM	PF04055.21	gi|410671260|ref|YP_006923631.1|	-	0.064	13.6	0.1	0.15	12.5	0.1	1.9	1	1	0	1	1	1	0	Radical	SAM	superfamily
ApbA	PF02558.16	gi|410671260|ref|YP_006923631.1|	-	0.1	12.2	0.1	0.15	11.7	0.1	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
CbiG_N	PF11760.8	gi|410671261|ref|YP_006923632.1|	-	3.4e-31	107.1	0.1	5.1e-31	106.5	0.1	1.3	1	0	0	1	1	1	1	Cobalamin	synthesis	G	N-terminal
CbiG_C	PF01890.16	gi|410671262|ref|YP_006923633.1|	-	1.1e-26	93.7	0.1	1.2e-26	93.5	0.1	1.0	1	0	0	1	1	1	1	Cobalamin	synthesis	G	C-terminus
TP_methylase	PF00590.20	gi|410671263|ref|YP_006923634.1|	-	1.1e-40	139.8	0.2	1.4e-40	139.6	0.2	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
CbiC	PF02570.15	gi|410671264|ref|YP_006923635.1|	-	1.3e-63	214.2	2.6	1.6e-63	213.9	2.6	1.1	1	0	0	1	1	1	1	Precorrin-8X	methylmutase
DsbD	PF02683.15	gi|410671266|ref|YP_006923637.1|	-	1.8e-34	119.5	24.0	7.9e-34	117.4	24.0	1.8	1	1	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DsbD_2	PF13386.6	gi|410671266|ref|YP_006923637.1|	-	2.6e-12	47.1	17.1	3.6e-12	46.7	17.1	1.2	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
MerE	PF05052.12	gi|410671266|ref|YP_006923637.1|	-	0.0015	18.4	3.2	0.072	13.0	0.3	2.7	2	0	0	2	2	2	2	MerE	protein
Thioredoxin	PF00085.20	gi|410671267|ref|YP_006923638.1|	-	1.7e-05	24.8	0.0	2e-05	24.5	0.0	1.3	1	1	0	1	1	1	1	Thioredoxin
Thioredoxin_3	PF13192.6	gi|410671267|ref|YP_006923638.1|	-	0.0019	18.2	0.0	0.0034	17.4	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin	domain
Redoxin	PF08534.10	gi|410671267|ref|YP_006923638.1|	-	0.031	14.0	0.0	0.046	13.4	0.0	1.5	1	1	0	1	1	1	0	Redoxin
Thioredoxin_4	PF13462.6	gi|410671267|ref|YP_006923638.1|	-	0.09	12.9	0.0	0.12	12.5	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin
TraF	PF13728.6	gi|410671267|ref|YP_006923638.1|	-	0.1	12.4	0.0	0.17	11.7	0.0	1.4	1	1	0	1	1	1	0	F	plasmid	transfer	operon	protein
RibD_C	PF01872.17	gi|410671268|ref|YP_006923639.1|	-	2.3e-53	181.0	0.0	2.6e-53	180.8	0.0	1.0	1	0	0	1	1	1	1	RibD	C-terminal	domain
CBS	PF00571.28	gi|410671269|ref|YP_006923640.1|	-	1.3e-40	137.6	12.3	3.2e-12	46.7	0.4	4.2	4	0	0	4	4	4	4	CBS	domain
SNURF	PF07192.11	gi|410671269|ref|YP_006923640.1|	-	0.0074	16.1	0.0	0.023	14.5	0.0	1.8	2	0	0	2	2	2	1	SNURF/RPN4	protein
GAF_2	PF13185.6	gi|410671269|ref|YP_006923640.1|	-	0.048	14.0	0.4	5	7.4	0.0	2.7	3	0	0	3	3	3	0	GAF	domain
H_kinase_N	PF12282.8	gi|410671269|ref|YP_006923640.1|	-	0.41	10.6	3.4	4.5	7.2	0.0	3.2	4	0	0	4	4	4	0	Signal	transduction	histidine	kinase
Usp	PF00582.26	gi|410671270|ref|YP_006923641.1|	-	3.8e-35	121.4	0.0	4.3e-35	121.3	0.0	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Amidohydro_1	PF01979.20	gi|410671271|ref|YP_006923642.1|	-	1.9e-30	106.4	0.3	5.7e-29	101.5	0.3	2.0	1	1	0	1	1	1	1	Amidohydrolase	family
A_deaminase	PF00962.22	gi|410671271|ref|YP_006923642.1|	-	2.3e-12	46.9	0.0	3.2e-12	46.4	0.0	1.1	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Amidohydro_3	PF07969.11	gi|410671271|ref|YP_006923642.1|	-	0.00023	20.8	0.1	0.0021	17.6	0.0	2.2	2	1	0	2	2	2	1	Amidohydrolase	family
Peripla_BP_2	PF01497.18	gi|410671271|ref|YP_006923642.1|	-	0.12	11.9	0.0	0.18	11.3	0.0	1.3	1	0	0	1	1	1	0	Periplasmic	binding	protein
DUF167	PF02594.16	gi|410671272|ref|YP_006923643.1|	-	7.7e-20	70.8	0.0	1e-19	70.4	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	ACR,	YggU	family	COG1872
Toprim	PF01751.22	gi|410671273|ref|YP_006923644.1|	-	1.5e-05	25.1	0.3	0.00083	19.6	0.0	2.8	2	1	0	2	2	2	1	Toprim	domain
Toprim_4	PF13662.6	gi|410671273|ref|YP_006923644.1|	-	6e-05	23.4	0.0	0.00033	21.1	0.0	2.3	2	1	0	2	2	2	1	Toprim	domain
MAT1	PF06391.13	gi|410671273|ref|YP_006923644.1|	-	0.0021	17.9	0.1	0.074	12.9	0.1	2.1	2	0	0	2	2	2	1	CDK-activating	kinase	assembly	factor	MAT1
Terpene_synth	PF01397.21	gi|410671273|ref|YP_006923644.1|	-	0.026	14.2	0.3	0.04	13.6	0.3	1.3	1	0	0	1	1	1	0	Terpene	synthase,	N-terminal	domain
Toprim_2	PF13155.6	gi|410671273|ref|YP_006923644.1|	-	0.086	13.3	0.0	0.17	12.3	0.0	1.6	1	0	0	1	1	1	0	Toprim-like
DUF356	PF04009.12	gi|410671274|ref|YP_006923645.1|	-	1.5e-43	147.3	0.1	1.8e-43	147.1	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF356)
CEP76-C2	PF15627.6	gi|410671274|ref|YP_006923645.1|	-	0.018	14.6	0.0	0.022	14.3	0.0	1.1	1	0	0	1	1	1	0	CEP76	C2	domain
Sulfakinin	PF08257.11	gi|410671274|ref|YP_006923645.1|	-	0.027	14.4	1.5	0.054	13.5	1.5	1.5	1	0	0	1	1	1	0	Sulfakinin	family
P5CR_dimer	PF14748.6	gi|410671275|ref|YP_006923646.1|	-	4.3e-40	136.1	1.7	4.5e-40	136.1	0.3	1.8	2	0	0	2	2	2	1	Pyrroline-5-carboxylate	reductase	dimerisation
F420_oxidored	PF03807.17	gi|410671275|ref|YP_006923646.1|	-	4e-22	78.6	0.4	4e-22	78.6	0.4	1.9	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|410671275|ref|YP_006923646.1|	-	4.9e-08	33.3	1.1	4.1e-07	30.3	1.1	2.1	1	1	1	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.23	gi|410671275|ref|YP_006923646.1|	-	3.3e-05	23.9	8.7	0.00039	20.4	8.7	2.3	1	1	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ApbA	PF02558.16	gi|410671275|ref|YP_006923646.1|	-	0.0014	18.3	0.3	0.0014	18.3	0.3	1.6	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
PDH	PF02153.17	gi|410671275|ref|YP_006923646.1|	-	0.0014	17.7	2.0	0.0022	17.1	1.9	1.3	1	1	0	1	1	1	1	Prephenate	dehydrogenase
Rossmann-like	PF10727.9	gi|410671275|ref|YP_006923646.1|	-	0.0067	16.3	0.3	0.014	15.3	0.2	1.6	1	1	0	1	1	1	1	Rossmann-like	domain
Semialdhyde_dh	PF01118.24	gi|410671275|ref|YP_006923646.1|	-	0.0069	16.8	0.2	0.015	15.8	0.2	1.6	1	1	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|410671275|ref|YP_006923646.1|	-	0.0095	15.3	0.1	0.018	14.4	0.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
RhoGAP	PF00620.27	gi|410671275|ref|YP_006923646.1|	-	0.14	11.9	0.0	0.24	11.2	0.0	1.3	1	0	0	1	1	1	0	RhoGAP	domain
HTH_31	PF13560.6	gi|410671276|ref|YP_006923647.1|	-	7e-06	26.3	0.7	1.2e-05	25.5	0.7	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|410671276|ref|YP_006923647.1|	-	8.2e-06	25.8	3.2	1.4e-05	25.1	3.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.7	gi|410671276|ref|YP_006923647.1|	-	0.00017	21.6	3.9	0.00031	20.7	3.9	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|410671276|ref|YP_006923647.1|	-	0.0011	18.8	2.8	0.0024	17.7	2.8	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
DUF1272	PF06906.11	gi|410671276|ref|YP_006923647.1|	-	0.018	15.1	0.1	0.028	14.5	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
Zn-ribbon_8	PF09723.10	gi|410671276|ref|YP_006923647.1|	-	0.049	13.8	0.4	0.093	12.9	0.4	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
HTH_37	PF13744.6	gi|410671276|ref|YP_006923647.1|	-	0.056	13.4	0.1	0.09	12.7	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
DZR	PF12773.7	gi|410671276|ref|YP_006923647.1|	-	0.15	12.1	0.5	0.23	11.5	0.5	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
AAA	PF00004.29	gi|410671277|ref|YP_006923648.1|	-	1.4e-43	148.5	0.2	5.7e-43	146.5	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|410671277|ref|YP_006923648.1|	-	1.7e-11	43.7	0.0	4.2e-11	42.5	0.0	1.7	1	0	0	1	1	1	1	AAA+	lid	domain
Prot_ATP_ID_OB	PF16450.5	gi|410671277|ref|YP_006923648.1|	-	5.5e-10	39.1	0.2	1.2e-09	38.0	0.2	1.6	1	0	0	1	1	1	1	Proteasomal	ATPase	OB	C-terminal	domain
AAA_5	PF07728.14	gi|410671277|ref|YP_006923648.1|	-	5.7e-09	36.1	0.4	2.4e-08	34.1	0.1	2.2	2	2	1	3	3	1	1	AAA	domain	(dynein-related	subfamily)
AAA_2	PF07724.14	gi|410671277|ref|YP_006923648.1|	-	1.3e-06	28.6	0.0	4.4e-06	26.9	0.0	1.9	2	0	0	2	2	1	1	AAA	domain	(Cdc48	subfamily)
AAA_16	PF13191.6	gi|410671277|ref|YP_006923648.1|	-	2e-06	28.3	0.6	0.00065	20.1	0.1	2.8	2	1	1	3	3	3	1	AAA	ATPase	domain
DUF815	PF05673.13	gi|410671277|ref|YP_006923648.1|	-	5e-06	25.8	0.0	1.2e-05	24.6	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Prot_ATP_OB_N	PF17758.1	gi|410671277|ref|YP_006923648.1|	-	0.00018	21.1	0.3	0.00049	19.7	0.1	1.8	2	0	0	2	2	1	1	Proteasomal	ATPase	OB	N-terminal	domain
RuvB_N	PF05496.12	gi|410671277|ref|YP_006923648.1|	-	0.00018	21.3	0.0	0.0005	19.9	0.0	1.7	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|410671277|ref|YP_006923648.1|	-	0.0011	19.3	2.8	0.018	15.3	0.6	2.7	2	1	0	2	2	1	1	AAA	domain
Filament	PF00038.21	gi|410671277|ref|YP_006923648.1|	-	0.0017	18.0	2.6	0.0033	17.1	2.6	1.4	1	0	0	1	1	1	1	Intermediate	filament	protein
AAA_28	PF13521.6	gi|410671277|ref|YP_006923648.1|	-	0.0024	18.1	0.0	0.005	17.1	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.22	gi|410671277|ref|YP_006923648.1|	-	0.0032	17.8	0.0	0.0093	16.3	0.0	1.8	2	0	0	2	2	1	1	RNA	helicase
AAA_18	PF13238.6	gi|410671277|ref|YP_006923648.1|	-	0.0042	17.6	0.0	0.019	15.5	0.0	2.2	2	0	0	2	2	1	1	AAA	domain
Sigma54_activat	PF00158.26	gi|410671277|ref|YP_006923648.1|	-	0.0054	16.5	0.0	0.093	12.4	0.0	2.5	2	0	0	2	2	2	1	Sigma-54	interaction	domain
TIP49	PF06068.13	gi|410671277|ref|YP_006923648.1|	-	0.0061	15.8	0.0	0.012	14.8	0.0	1.4	1	0	0	1	1	1	1	TIP49	P-loop	domain
MCM	PF00493.23	gi|410671277|ref|YP_006923648.1|	-	0.011	14.9	0.1	1.1	8.3	0.0	2.4	2	0	0	2	2	2	0	MCM	P-loop	domain
AAA_3	PF07726.11	gi|410671277|ref|YP_006923648.1|	-	0.017	15.0	0.0	0.037	13.9	0.0	1.7	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
TsaE	PF02367.17	gi|410671277|ref|YP_006923648.1|	-	0.018	15.0	0.0	0.034	14.2	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
GIT_CC	PF16559.5	gi|410671277|ref|YP_006923648.1|	-	0.026	14.4	0.8	6.5	6.7	0.0	2.9	2	1	0	2	2	2	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
ATPase	PF06745.13	gi|410671277|ref|YP_006923648.1|	-	0.026	13.8	4.5	0.11	11.8	0.0	3.0	2	1	1	3	3	3	0	KaiC
IstB_IS21	PF01695.17	gi|410671277|ref|YP_006923648.1|	-	0.027	14.2	0.0	0.076	12.7	0.0	1.7	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_24	PF13479.6	gi|410671277|ref|YP_006923648.1|	-	0.031	14.0	0.0	0.095	12.4	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|410671277|ref|YP_006923648.1|	-	0.04	14.1	0.0	0.087	13.0	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|410671277|ref|YP_006923648.1|	-	0.044	13.2	0.0	0.12	11.7	0.0	1.7	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Spc7	PF08317.11	gi|410671277|ref|YP_006923648.1|	-	0.052	12.4	1.1	0.097	11.5	0.7	1.6	2	0	0	2	2	2	0	Spc7	kinetochore	protein
AAA_7	PF12775.7	gi|410671277|ref|YP_006923648.1|	-	0.069	12.7	0.0	0.16	11.5	0.0	1.6	1	1	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_25	PF13481.6	gi|410671277|ref|YP_006923648.1|	-	0.077	12.6	1.4	0.6	9.6	0.0	2.7	3	0	0	3	3	3	0	AAA	domain
Troponin	PF00992.20	gi|410671277|ref|YP_006923648.1|	-	0.078	13.3	4.4	0.16	12.2	4.4	1.5	1	0	0	1	1	1	0	Troponin
Zeta_toxin	PF06414.12	gi|410671277|ref|YP_006923648.1|	-	0.1	11.9	0.0	0.24	10.7	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
NACHT	PF05729.12	gi|410671277|ref|YP_006923648.1|	-	0.11	12.4	0.2	0.41	10.5	0.0	2.0	2	0	0	2	2	2	0	NACHT	domain
ABC_tran_Xtn	PF12848.7	gi|410671277|ref|YP_006923648.1|	-	0.12	12.5	1.2	0.28	11.2	1.2	1.6	1	0	0	1	1	1	0	ABC	transporter
DUF2075	PF09848.9	gi|410671277|ref|YP_006923648.1|	-	0.12	11.6	0.0	0.19	10.9	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_14	PF13173.6	gi|410671277|ref|YP_006923648.1|	-	0.14	12.2	0.3	0.79	9.8	0.0	2.2	2	1	0	2	2	2	0	AAA	domain
RraB	PF06877.11	gi|410671277|ref|YP_006923648.1|	-	0.16	12.7	0.4	1.5	9.6	0.0	2.6	3	0	0	3	3	2	0	Regulator	of	ribonuclease	activity	B
SKA2	PF16740.5	gi|410671277|ref|YP_006923648.1|	-	0.16	11.8	2.0	0.44	10.4	0.9	2.3	3	0	0	3	3	1	0	Spindle	and	kinetochore-associated	protein	2
ADIP	PF11559.8	gi|410671277|ref|YP_006923648.1|	-	0.33	11.0	4.3	0.67	10.0	4.3	1.4	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
TSC22	PF01166.18	gi|410671277|ref|YP_006923648.1|	-	0.56	10.6	5.0	0.74	10.2	0.3	2.7	3	0	0	3	3	2	0	TSC-22/dip/bun	family
bZIP_2	PF07716.15	gi|410671277|ref|YP_006923648.1|	-	5.8	7.1	9.7	1.8	8.7	0.7	2.9	3	0	0	3	3	3	0	Basic	region	leucine	zipper
ZapB	PF06005.12	gi|410671277|ref|YP_006923648.1|	-	6.3	7.3	12.5	38	4.8	6.3	3.5	3	1	0	3	3	3	0	Cell	division	protein	ZapB
DUF99	PF01949.16	gi|410671278|ref|YP_006923649.1|	-	2.9e-61	206.1	0.0	3.3e-61	205.9	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF99
Endonuclease_5	PF04493.14	gi|410671278|ref|YP_006923649.1|	-	0.0012	18.5	0.1	0.0021	17.8	0.0	1.6	2	0	0	2	2	2	1	Endonuclease	V
DUF5612	PF18462.1	gi|410671278|ref|YP_006923649.1|	-	0.089	12.6	0.2	0.27	11.0	0.0	1.9	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF5612)
PGM_PMM_I	PF02878.16	gi|410671279|ref|YP_006923650.1|	-	7.2e-42	142.4	0.3	1.4e-41	141.5	0.3	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|410671279|ref|YP_006923650.1|	-	3.5e-27	95.0	0.0	7.1e-27	94.0	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.16	gi|410671279|ref|YP_006923650.1|	-	2e-26	92.4	0.0	3.9e-26	91.5	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.20	gi|410671279|ref|YP_006923650.1|	-	7.4e-12	45.3	0.0	2e-11	43.9	0.0	1.8	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
QueC	PF06508.13	gi|410671280|ref|YP_006923651.1|	-	3.4e-10	39.8	0.0	1e-09	38.2	0.0	1.7	1	1	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
NAD_synthase	PF02540.17	gi|410671280|ref|YP_006923651.1|	-	1.4e-08	34.2	0.0	2.5e-08	33.4	0.0	1.4	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|410671280|ref|YP_006923651.1|	-	2.1e-08	33.4	0.0	2.5e-05	23.2	0.0	2.2	2	0	0	2	2	2	2	tRNA	methyl	transferase
Asn_synthase	PF00733.21	gi|410671280|ref|YP_006923651.1|	-	1.9e-07	31.1	0.0	2.5e-07	30.7	0.0	1.2	1	0	0	1	1	1	1	Asparagine	synthase
ATP_bind_3	PF01171.20	gi|410671280|ref|YP_006923651.1|	-	0.00019	21.3	0.0	0.00027	20.7	0.0	1.5	1	1	0	1	1	1	1	PP-loop	family
Arginosuc_synth	PF00764.19	gi|410671280|ref|YP_006923651.1|	-	0.0004	19.8	0.0	0.00061	19.2	0.0	1.3	1	0	0	1	1	1	1	Arginosuccinate	synthase
ThiI	PF02568.14	gi|410671280|ref|YP_006923651.1|	-	0.11	12.0	0.0	0.25	10.9	0.0	1.5	1	1	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
Acetyltransf_7	PF13508.7	gi|410671281|ref|YP_006923652.1|	-	2.2e-11	44.0	0.0	3.1e-11	43.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|410671281|ref|YP_006923652.1|	-	2.9e-10	40.4	0.0	3.6e-10	40.1	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|410671281|ref|YP_006923652.1|	-	3e-10	40.1	0.0	4.1e-10	39.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|410671281|ref|YP_006923652.1|	-	5.1e-05	23.2	0.0	7.2e-05	22.7	0.0	1.2	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|410671281|ref|YP_006923652.1|	-	7.4e-05	22.8	0.0	0.00046	20.3	0.0	2.1	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|410671281|ref|YP_006923652.1|	-	0.041	14.0	0.0	0.064	13.4	0.0	1.3	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Acetyltransf_15	PF17013.5	gi|410671281|ref|YP_006923652.1|	-	0.23	10.9	0.0	0.53	9.7	0.0	1.5	1	1	1	2	2	2	0	Putative	acetyl-transferase
DUF531	PF04407.12	gi|410671282|ref|YP_006923653.1|	-	1.4e-82	275.8	0.0	1.6e-82	275.6	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF531)
SPOUT_MTase_2	PF14419.6	gi|410671282|ref|YP_006923653.1|	-	0.0095	15.3	0.0	0.013	14.9	0.0	1.2	1	0	0	1	1	1	1	AF2226-like	SPOUT	RNA	Methylase	fused	to	THUMP
DUF166	PF02593.14	gi|410671283|ref|YP_006923654.1|	-	2.2e-70	236.7	0.1	2.5e-70	236.5	0.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function
Fasciclin	PF02469.22	gi|410671284|ref|YP_006923655.1|	-	5.3e-39	133.4	1.4	8.8e-39	132.6	0.2	2.1	2	0	0	2	2	2	1	Fasciclin	domain
Cadherin_4	PF17803.1	gi|410671284|ref|YP_006923655.1|	-	0.038	14.6	0.2	0.038	14.6	0.2	5.2	5	2	0	5	5	5	0	Bacterial	cadherin-like	domain
Phage_gp53	PF11246.8	gi|410671284|ref|YP_006923655.1|	-	0.063	12.9	1.1	0.12	12.0	0.1	1.9	2	0	0	2	2	2	0	Base	plate	wedge	protein	53
DUF1249	PF06853.12	gi|410671284|ref|YP_006923655.1|	-	0.1	12.6	0.2	0.67	10.0	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1249)
DUF211	PF02680.14	gi|410671284|ref|YP_006923655.1|	-	1.1	9.5	7.0	0.67	10.2	0.6	3.1	3	0	0	3	3	3	0	Uncharacterized	ArCR,	COG1888
Glyco_hydro_20b	PF02838.15	gi|410671285|ref|YP_006923656.1|	-	0.044	14.6	0.0	13	6.6	0.0	3.1	3	0	0	3	3	3	0	Glycosyl	hydrolase	family	20,	domain	2
WG_beta_rep	PF14903.6	gi|410671285|ref|YP_006923656.1|	-	0.1	12.9	0.4	68	3.9	0.0	3.9	3	0	0	3	3	3	0	WG	containing	repeat
Fanconi_A_N	PF15865.5	gi|410671285|ref|YP_006923656.1|	-	0.2	11.0	0.1	2.9	7.2	0.0	2.3	3	0	0	3	3	3	0	Fanconi	anaemia	group	A	protein	N	terminus
DUF3485	PF11984.8	gi|410671286|ref|YP_006923657.1|	-	0.09	12.5	0.1	0.13	12.0	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3485)
DUF362	PF04015.12	gi|410671287|ref|YP_006923658.1|	-	3.4e-51	174.4	0.0	4.3e-51	174.0	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF362)
Fer4	PF00037.27	gi|410671287|ref|YP_006923658.1|	-	1.2e-11	43.9	21.4	9.8e-07	28.3	8.1	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|410671287|ref|YP_006923658.1|	-	2.7e-06	27.9	16.6	6.2e-06	26.7	16.6	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410671287|ref|YP_006923658.1|	-	5.6e-06	26.4	17.2	5.6e-05	23.2	17.7	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410671287|ref|YP_006923658.1|	-	0.0001	22.3	16.3	0.00022	21.3	16.3	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410671287|ref|YP_006923658.1|	-	0.00014	21.8	17.9	0.0004	20.3	4.5	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|410671287|ref|YP_006923658.1|	-	0.00017	22.1	9.2	0.09	13.3	2.2	2.6	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_9	PF13187.6	gi|410671287|ref|YP_006923658.1|	-	0.00017	21.6	15.1	0.0003	20.9	14.7	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410671287|ref|YP_006923658.1|	-	0.00019	21.9	11.3	0.032	14.8	0.8	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410671287|ref|YP_006923658.1|	-	0.00027	21.8	14.7	0.0019	19.1	2.2	2.4	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|410671287|ref|YP_006923658.1|	-	0.00029	20.8	19.7	0.018	15.1	7.5	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|410671287|ref|YP_006923658.1|	-	0.0024	18.3	16.6	2.1	8.9	17.7	2.4	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|410671287|ref|YP_006923658.1|	-	0.0063	17.2	11.7	0.28	11.9	2.1	2.8	1	1	1	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.7	gi|410671287|ref|YP_006923658.1|	-	0.035	14.6	15.4	0.051	14.1	1.9	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|410671287|ref|YP_006923658.1|	-	0.081	13.1	4.8	0.18	12.0	4.8	1.6	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|410671287|ref|YP_006923658.1|	-	0.092	13.7	23.0	0.96	10.5	7.6	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Lar_N	PF09861.9	gi|410671287|ref|YP_006923658.1|	-	0.16	11.1	0.0	0.23	10.6	0.0	1.2	1	0	0	1	1	1	0	Lactate	racemase	N-terminal	domain
tRNA-synt_2d	PF01409.20	gi|410671288|ref|YP_006923659.1|	-	6.8e-91	304.1	0.0	9.8e-91	303.6	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA_synthFbeta	PF17759.1	gi|410671288|ref|YP_006923659.1|	-	2.1e-09	37.2	0.0	1.3e-06	28.1	0.0	2.4	2	0	0	2	2	2	2	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
tRNA-synt_2	PF00152.20	gi|410671288|ref|YP_006923659.1|	-	0.01	15.0	0.2	0.1	11.7	0.0	2.5	3	0	0	3	3	3	0	tRNA	synthetases	class	II	(D,	K	and	N)
HTH_45	PF14947.6	gi|410671288|ref|YP_006923659.1|	-	0.045	13.7	0.7	1.4	8.9	0.2	2.5	2	0	0	2	2	2	0	Winged	helix-turn-helix
PheRS_DBD3	PF18553.1	gi|410671288|ref|YP_006923659.1|	-	0.047	14.0	1.1	0.42	10.9	0.0	2.9	4	0	0	4	4	4	0	PheRS	DNA	binding	domain	3
NQRA	PF05896.11	gi|410671288|ref|YP_006923659.1|	-	0.068	12.6	0.0	0.11	11.9	0.0	1.2	1	0	0	1	1	1	0	Na(+)-translocating	NADH-quinone	reductase	subunit	A	(NQRA)
DUF4364	PF14277.6	gi|410671288|ref|YP_006923659.1|	-	0.12	12.1	0.5	9	6.0	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4364)
tRNA-synt_1b	PF00579.25	gi|410671289|ref|YP_006923660.1|	-	9.1e-39	133.5	0.0	2.9e-23	82.6	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(W	and	Y)
CtIP_N	PF10482.9	gi|410671289|ref|YP_006923660.1|	-	0.12	12.4	1.5	16	5.5	0.2	2.4	2	0	0	2	2	2	0	Tumour-suppressor	protein	CtIP	N-terminal	domain
Radical_SAM	PF04055.21	gi|410671290|ref|YP_006923661.1|	-	3.6e-14	53.5	0.2	6.3e-14	52.7	0.2	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
SPASM	PF13186.6	gi|410671290|ref|YP_006923661.1|	-	7.9e-07	29.5	0.2	1.7e-06	28.4	0.2	1.5	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
Fer4_12	PF13353.6	gi|410671290|ref|YP_006923661.1|	-	0.0067	16.7	0.0	0.014	15.7	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|410671290|ref|YP_006923661.1|	-	0.028	14.5	2.5	0.093	12.9	2.5	1.8	1	1	0	1	1	1	0	4Fe-4S	single	cluster	domain
ATPase	PF06745.13	gi|410671291|ref|YP_006923662.1|	-	1.2e-62	211.3	0.2	1.4e-62	211.1	0.2	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|410671291|ref|YP_006923662.1|	-	2.6e-07	30.4	0.0	3.8e-07	29.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
GvpD	PF07088.11	gi|410671291|ref|YP_006923662.1|	-	0.00042	19.1	0.0	0.0055	15.4	0.0	2.1	2	0	0	2	2	2	1	GvpD	gas	vesicle	protein
DnaB_C	PF03796.15	gi|410671291|ref|YP_006923662.1|	-	0.0084	15.5	0.0	0.031	13.6	0.0	1.9	1	1	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_33	PF13671.6	gi|410671291|ref|YP_006923662.1|	-	0.019	15.1	0.4	0.085	13.0	0.4	2.0	1	1	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|410671291|ref|YP_006923662.1|	-	0.047	13.4	0.0	0.074	12.8	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_24	PF13479.6	gi|410671291|ref|YP_006923662.1|	-	0.055	13.2	0.2	0.09	12.5	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|410671291|ref|YP_006923662.1|	-	0.1	12.9	0.1	0.44	10.8	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|410671291|ref|YP_006923662.1|	-	0.1	12.4	0.1	0.25	11.1	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_19	PF13245.6	gi|410671291|ref|YP_006923662.1|	-	0.15	12.4	0.0	0.29	11.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Ploopntkinase3	PF18751.1	gi|410671291|ref|YP_006923662.1|	-	0.19	11.6	0.0	0.35	10.7	0.0	1.4	1	0	0	1	1	1	0	P-loop	Nucleotide	Kinase3
eIF-5_eIF-2B	PF01873.17	gi|410671292|ref|YP_006923663.1|	-	1.3e-38	131.5	0.0	1.8e-38	131.0	0.0	1.2	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
TRAM	PF01938.20	gi|410671292|ref|YP_006923663.1|	-	4.3e-11	42.6	0.6	9.4e-11	41.6	0.6	1.6	1	0	0	1	1	1	1	TRAM	domain
NMD3	PF04981.13	gi|410671292|ref|YP_006923663.1|	-	0.016	14.7	0.1	0.022	14.3	0.1	1.2	1	0	0	1	1	1	0	NMD3	family
Stc1	PF12898.7	gi|410671292|ref|YP_006923663.1|	-	0.072	13.7	0.3	0.12	12.9	0.3	1.4	1	0	0	1	1	1	0	Stc1	domain
ZF-HD_dimer	PF04770.12	gi|410671292|ref|YP_006923663.1|	-	0.095	13.0	0.4	0.2	12.0	0.4	1.6	1	0	0	1	1	1	0	ZF-HD	protein	dimerisation	region
Ribosomal_L16	PF00252.18	gi|410671293|ref|YP_006923664.1|	-	1.7e-33	115.4	0.4	2.1e-33	115.1	0.4	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
DUF1786	PF08735.10	gi|410671294|ref|YP_006923665.1|	-	5.8e-91	304.2	0.1	7.1e-91	304.0	0.1	1.1	1	0	0	1	1	1	1	Putative	pyruvate	format-lyase	activating	enzyme	(DUF1786)
DDR	PF08841.10	gi|410671294|ref|YP_006923665.1|	-	0.00064	18.8	0.2	0.011	14.7	0.1	2.2	2	0	0	2	2	2	1	Diol	dehydratase	reactivase	ATPase-like	domain
MreB_Mbl	PF06723.13	gi|410671294|ref|YP_006923665.1|	-	0.072	11.9	0.1	0.45	9.3	0.0	2.1	2	0	0	2	2	2	0	MreB/Mbl	protein
FtsA	PF14450.6	gi|410671294|ref|YP_006923665.1|	-	0.1	13.0	0.3	23	5.5	0.0	2.4	2	0	0	2	2	2	0	Cell	division	protein	FtsA
MoCF_biosynth	PF00994.24	gi|410671295|ref|YP_006923666.1|	-	1.5e-31	109.0	0.1	1.7e-31	108.8	0.1	1.0	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
ATPase	PF06745.13	gi|410671296|ref|YP_006923667.1|	-	0.0071	15.7	0.1	0.012	15.0	0.1	1.4	1	1	0	1	1	1	1	KaiC
DUF835	PF05763.12	gi|410671296|ref|YP_006923667.1|	-	0.0082	15.9	0.1	0.012	15.3	0.1	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF835)
CRS1_YhbY	PF01985.21	gi|410671297|ref|YP_006923668.1|	-	1.4e-20	73.2	1.5	1.5e-20	73.1	1.5	1.0	1	0	0	1	1	1	1	CRS1	/	YhbY	(CRM)	domain
DUF190	PF02641.15	gi|410671298|ref|YP_006923669.1|	-	1.4e-32	111.8	0.2	1.6e-32	111.7	0.2	1.0	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1993
PepSY	PF03413.19	gi|410671299|ref|YP_006923670.1|	-	0.14	12.7	0.0	0.22	12.1	0.0	1.4	1	0	0	1	1	1	0	Peptidase	propeptide	and	YPEB	domain
DsbD	PF02683.15	gi|410671300|ref|YP_006923671.1|	-	8.7e-16	58.5	16.7	8.7e-16	58.5	16.7	1.4	2	0	0	2	2	2	1	Cytochrome	C	biogenesis	protein	transmembrane	region
Thioredoxin	PF00085.20	gi|410671300|ref|YP_006923671.1|	-	4.2e-06	26.7	0.0	7.4e-06	25.9	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_3	PF13192.6	gi|410671300|ref|YP_006923671.1|	-	2e-05	24.5	0.1	5.2e-05	23.2	0.1	1.7	2	0	0	2	2	2	1	Thioredoxin	domain
Glutaredoxin	PF00462.24	gi|410671300|ref|YP_006923671.1|	-	0.13	12.5	0.1	0.31	11.3	0.1	1.7	1	0	0	1	1	1	0	Glutaredoxin
CRCB	PF02537.15	gi|410671301|ref|YP_006923672.1|	-	3.2e-36	123.5	29.1	9e-19	67.6	11.3	2.2	2	0	0	2	2	2	2	CrcB-like	protein,	Camphor	Resistance	(CrcB)
MoeA_N	PF03453.17	gi|410671302|ref|YP_006923673.1|	-	2.5e-36	124.8	0.1	3.7e-36	124.3	0.1	1.3	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.24	gi|410671302|ref|YP_006923673.1|	-	5.2e-20	71.6	0.0	1.2e-19	70.4	0.0	1.6	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.15	gi|410671302|ref|YP_006923673.1|	-	2.7e-15	56.3	0.1	5.9e-15	55.2	0.1	1.6	1	0	0	1	1	1	1	MoeA	C-terminal	region	(domain	IV)
ThiS	PF02597.20	gi|410671303|ref|YP_006923674.1|	-	1.8e-19	70.1	0.0	2.1e-19	69.9	0.0	1.0	1	0	0	1	1	1	1	ThiS	family
Lambda_tail_I	PF06805.12	gi|410671303|ref|YP_006923674.1|	-	0.057	13.8	0.0	0.063	13.6	0.0	1.1	1	0	0	1	1	1	0	Bacteriophage	lambda	tail	assembly	protein	I
ABC2_membrane	PF01061.24	gi|410671304|ref|YP_006923675.1|	-	2.4e-35	121.9	24.3	2.4e-35	121.9	24.3	1.5	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|410671304|ref|YP_006923675.1|	-	1.7e-12	47.2	28.3	1.7e-12	47.2	28.3	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|410671304|ref|YP_006923675.1|	-	0.0053	16.7	9.8	0.0053	16.7	9.8	2.3	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|410671304|ref|YP_006923675.1|	-	0.011	15.0	22.3	0.028	13.7	22.3	1.7	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
Flavoprotein	PF02441.19	gi|410671305|ref|YP_006923676.1|	-	8.9e-27	93.8	0.0	1.1e-26	93.5	0.0	1.0	1	0	0	1	1	1	1	Flavoprotein
HD	PF01966.22	gi|410671307|ref|YP_006923678.1|	-	1.5e-14	54.3	3.8	1.6e-14	54.2	1.4	2.3	2	1	1	3	3	3	1	HD	domain
DUF2482	PF10655.9	gi|410671307|ref|YP_006923678.1|	-	0.0036	17.8	0.1	0.0097	16.4	0.1	1.7	1	0	0	1	1	1	1	Hypothetical	protein	of	unknown	function	(DUF2482)
HDOD	PF08668.12	gi|410671307|ref|YP_006923678.1|	-	0.016	14.7	0.0	0.053	13.0	0.0	1.9	2	0	0	2	2	2	0	HDOD	domain
LPD1	PF18796.1	gi|410671307|ref|YP_006923678.1|	-	0.047	13.8	0.2	0.64	10.2	0.0	2.5	2	1	0	2	2	2	0	Large	polyvalent	protein-associated	domain	1
UPF0052	PF01933.18	gi|410671308|ref|YP_006923679.1|	-	1.1e-49	169.2	0.0	1.3e-49	169.0	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0052
DUF4226	PF10774.9	gi|410671308|ref|YP_006923679.1|	-	0.088	13.1	0.0	0.18	12.1	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4226)
Claudin_3	PF06653.11	gi|410671309|ref|YP_006923680.1|	-	0.057	13.4	8.4	0.077	12.9	8.4	1.1	1	0	0	1	1	1	0	Tight	junction	protein,	Claudin-like
PIRT	PF15099.6	gi|410671309|ref|YP_006923680.1|	-	0.27	10.8	3.3	0.27	10.8	1.6	1.7	2	0	0	2	2	2	0	Phosphoinositide-interacting	protein	family
DUF962	PF06127.11	gi|410671309|ref|YP_006923680.1|	-	0.64	10.1	4.6	0.53	10.4	0.2	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF962)
DUF2569	PF10754.9	gi|410671309|ref|YP_006923680.1|	-	0.68	10.4	10.8	1.3	9.4	10.8	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2569)
EI24	PF07264.11	gi|410671309|ref|YP_006923680.1|	-	0.74	10.0	9.6	0.93	9.7	9.6	1.1	1	0	0	1	1	1	0	Etoposide-induced	protein	2.4	(EI24)
DUF2207	PF09972.9	gi|410671309|ref|YP_006923680.1|	-	2.6	6.7	6.1	3	6.5	6.1	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Pribosyltran	PF00156.27	gi|410671310|ref|YP_006923681.1|	-	1.2e-19	70.4	0.3	1.4e-19	70.1	0.3	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|410671310|ref|YP_006923681.1|	-	4.5e-05	23.0	0.1	5.2e-05	22.8	0.1	1.4	1	1	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|410671310|ref|YP_006923681.1|	-	0.0031	17.0	0.0	0.0044	16.5	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase
DUF1529	PF07485.11	gi|410671310|ref|YP_006923681.1|	-	0.0077	16.1	0.1	0.8	9.6	0.0	2.2	2	0	0	2	2	2	1	Domain	of	Unknown	Function	(DUF1259)
HTH_39	PF14090.6	gi|410671310|ref|YP_006923681.1|	-	0.015	15.0	0.1	2.2	8.1	0.0	2.9	2	1	1	3	3	3	0	Helix-turn-helix	domain
FeoA	PF04023.14	gi|410671310|ref|YP_006923681.1|	-	0.14	12.4	0.8	3.1	8.1	0.4	2.6	2	1	0	2	2	2	0	FeoA	domain
Diphthamide_syn	PF01866.17	gi|410671311|ref|YP_006923682.1|	-	4.5e-79	266.1	0.0	5.4e-79	265.8	0.0	1.0	1	0	0	1	1	1	1	Putative	diphthamide	synthesis	protein
PrmA	PF06325.13	gi|410671312|ref|YP_006923683.1|	-	7.6e-16	58.4	0.1	9.9e-16	58.0	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
MTS	PF05175.14	gi|410671312|ref|YP_006923683.1|	-	8.8e-16	57.9	0.0	1.4e-15	57.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|410671312|ref|YP_006923683.1|	-	5.1e-12	46.3	0.0	1.5e-11	44.9	0.0	1.9	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|410671312|ref|YP_006923683.1|	-	1.4e-11	44.4	0.0	2.1e-11	43.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410671312|ref|YP_006923683.1|	-	4.7e-08	33.6	0.2	1.2e-07	32.3	0.1	1.7	2	0	0	2	2	1	1	Methyltransferase	domain
UPF0020	PF01170.18	gi|410671312|ref|YP_006923683.1|	-	1.4e-07	31.4	0.4	1.3e-06	28.2	0.4	2.0	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_32	PF13679.6	gi|410671312|ref|YP_006923683.1|	-	0.00011	22.3	0.0	0.00015	21.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|410671312|ref|YP_006923683.1|	-	0.00015	21.5	0.0	0.00021	21.0	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_15	PF09445.10	gi|410671312|ref|YP_006923683.1|	-	0.00027	20.6	0.0	0.00035	20.2	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_23	PF13489.6	gi|410671312|ref|YP_006923683.1|	-	0.0011	18.8	0.0	0.0013	18.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|410671312|ref|YP_006923683.1|	-	0.0014	18.5	0.0	0.0018	18.1	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Ubie_methyltran	PF01209.18	gi|410671312|ref|YP_006923683.1|	-	0.0023	17.3	0.0	0.0036	16.7	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
FmrO	PF07091.11	gi|410671312|ref|YP_006923683.1|	-	0.0061	16.1	0.1	0.0082	15.7	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	methyltransferase	(FmrO)
Methyltransf_12	PF08242.12	gi|410671312|ref|YP_006923683.1|	-	0.009	16.7	0.0	0.021	15.6	0.0	1.7	2	1	0	2	2	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|410671312|ref|YP_006923683.1|	-	0.0098	15.8	0.1	0.014	15.3	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.16	gi|410671312|ref|YP_006923683.1|	-	0.028	14.1	0.0	0.046	13.5	0.0	1.4	1	1	0	1	1	1	0	Met-10+	like-protein
CMAS	PF02353.20	gi|410671312|ref|YP_006923683.1|	-	0.04	13.2	0.0	0.055	12.7	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
DUF43	PF01861.16	gi|410671312|ref|YP_006923683.1|	-	0.047	12.9	0.0	0.075	12.2	0.0	1.3	1	0	0	1	1	1	0	Branched-chain	polyamine	synthase	A	C-terminal	domain
FtsJ	PF01728.19	gi|410671312|ref|YP_006923683.1|	-	0.049	13.7	0.0	0.055	13.6	0.0	1.2	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
DNA_methylase	PF00145.17	gi|410671312|ref|YP_006923683.1|	-	0.063	12.6	0.0	0.1	11.9	0.0	1.2	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
AviRa	PF11599.8	gi|410671312|ref|YP_006923683.1|	-	0.085	12.3	0.0	0.15	11.5	0.0	1.4	1	1	0	1	1	1	0	RRNA	methyltransferase	AviRa
ECR1_N	PF14382.6	gi|410671313|ref|YP_006923684.1|	-	1.1e-09	37.9	1.5	2.1e-09	37.0	1.5	1.5	1	0	0	1	1	1	1	Exosome	complex	exonuclease	RRP4	N-terminal	region
EXOSC1	PF10447.9	gi|410671313|ref|YP_006923684.1|	-	0.00064	20.3	0.7	0.002	18.7	0.7	1.9	1	1	0	1	1	1	1	Exosome	component	EXOSC1/CSL4
zf-NADH-PPase	PF09297.11	gi|410671313|ref|YP_006923684.1|	-	0.004	16.8	0.6	0.0078	15.8	0.6	1.5	1	0	0	1	1	1	1	NADH	pyrophosphatase	zinc	ribbon	domain
HypA	PF01155.19	gi|410671313|ref|YP_006923684.1|	-	0.0057	16.7	1.2	0.0083	16.1	1.2	1.4	1	1	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|410671313|ref|YP_006923684.1|	-	0.016	15.2	0.5	0.026	14.6	0.5	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|410671313|ref|YP_006923684.1|	-	0.018	14.9	1.1	0.033	14.1	1.1	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
TackOD1	PF18551.1	gi|410671313|ref|YP_006923684.1|	-	0.023	14.4	0.1	0.03	14.0	0.1	1.1	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
zinc_ribbon_4	PF13717.6	gi|410671313|ref|YP_006923684.1|	-	0.067	13.1	3.1	2.6	8.0	3.1	2.3	1	1	0	1	1	1	0	zinc-ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|410671313|ref|YP_006923684.1|	-	0.07	13.2	0.1	0.11	12.6	0.1	1.2	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
zinc_ribbon_2	PF13240.6	gi|410671313|ref|YP_006923684.1|	-	0.074	12.8	0.7	0.13	12.0	0.7	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
Spt4	PF06093.13	gi|410671313|ref|YP_006923684.1|	-	0.086	13.0	0.8	0.17	12.0	0.6	1.6	2	0	0	2	2	2	0	Spt4/RpoE2	zinc	finger
S1	PF00575.23	gi|410671313|ref|YP_006923684.1|	-	0.099	13.0	1.8	12	6.3	0.0	2.5	2	0	0	2	2	2	0	S1	RNA	binding	domain
Auto_anti-p27	PF06677.12	gi|410671313|ref|YP_006923684.1|	-	0.12	12.5	1.6	0.19	11.9	1.6	1.3	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
YwqJ-deaminase	PF14431.6	gi|410671313|ref|YP_006923684.1|	-	0.16	12.1	1.4	0.45	10.7	0.1	2.1	1	1	1	2	2	2	0	YwqJ-like	deaminase
RNA_POL_M_15KD	PF02150.16	gi|410671313|ref|YP_006923684.1|	-	0.17	11.8	2.2	0.29	11.0	2.2	1.3	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
Nudix_N_2	PF14803.6	gi|410671313|ref|YP_006923684.1|	-	0.19	11.6	1.6	11	6.0	0.0	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
zf-ribbon_3	PF13248.6	gi|410671313|ref|YP_006923684.1|	-	0.82	9.2	2.9	2.9	7.4	2.9	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
RNA_pol_L_2	PF13656.6	gi|410671314|ref|YP_006923685.1|	-	4.4e-20	71.2	0.1	5.5e-20	70.9	0.1	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RNA_pol_L	PF01193.24	gi|410671314|ref|YP_006923685.1|	-	2.3e-07	30.1	0.0	4.5e-07	29.2	0.0	1.5	1	1	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
SepSecS	PF05889.13	gi|410671315|ref|YP_006923686.1|	-	2.1e-48	165.0	0.0	4.3e-48	163.9	0.0	1.5	1	1	0	1	1	1	1	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
Aminotran_5	PF00266.19	gi|410671315|ref|YP_006923686.1|	-	2.3e-19	69.6	0.0	3.1e-19	69.2	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.21	gi|410671315|ref|YP_006923686.1|	-	1.2e-08	34.5	0.0	1.7e-08	34.1	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Pyridoxal_deC	PF00282.19	gi|410671315|ref|YP_006923686.1|	-	0.00027	19.8	0.0	0.00041	19.2	0.0	1.2	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase	conserved	domain
OKR_DC_1	PF01276.20	gi|410671315|ref|YP_006923686.1|	-	0.00059	18.7	0.0	0.002	17.0	0.0	1.7	1	1	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	major	domain
DegT_DnrJ_EryC1	PF01041.17	gi|410671315|ref|YP_006923686.1|	-	0.0076	15.6	0.0	0.043	13.1	0.1	1.9	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
MS_channel	PF00924.18	gi|410671316|ref|YP_006923687.1|	-	1.3e-23	83.7	0.0	1.9e-23	83.1	0.0	1.5	1	1	0	1	1	1	1	Mechanosensitive	ion	channel
LPAM_1	PF08139.12	gi|410671317|ref|YP_006923688.1|	-	0.49	11.0	6.3	1.1	9.9	6.3	1.6	1	1	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
DprA_WH	PF17782.1	gi|410671319|ref|YP_006923690.1|	-	0.02	15.0	0.0	0.074	13.2	0.0	1.8	2	0	0	2	2	2	0	DprA	winged	helix	domain
HTH_24	PF13412.6	gi|410671319|ref|YP_006923690.1|	-	0.031	13.8	0.0	0.061	12.9	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|410671319|ref|YP_006923690.1|	-	0.072	13.0	0.0	0.12	12.3	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_11	PF08279.12	gi|410671319|ref|YP_006923690.1|	-	0.078	12.9	0.0	0.19	11.7	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
HTH_IclR	PF09339.10	gi|410671319|ref|YP_006923690.1|	-	0.17	11.7	0.1	0.37	10.6	0.0	1.6	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
CARDB	PF07705.11	gi|410671320|ref|YP_006923691.1|	-	7.6e-12	45.4	4.5	1.6e-05	25.1	0.1	3.3	3	0	0	3	3	3	2	CARDB
RAMP4	PF06624.12	gi|410671320|ref|YP_006923691.1|	-	0.019	15.0	1.2	0.12	12.4	0.1	2.7	3	0	0	3	3	3	0	Ribosome	associated	membrane	protein	RAMP4
MLANA	PF14991.6	gi|410671320|ref|YP_006923691.1|	-	0.037	14.3	0.0	0.064	13.5	0.0	1.4	1	0	0	1	1	1	0	Protein	melan-A
DUF2745	PF10922.8	gi|410671320|ref|YP_006923691.1|	-	0.049	13.9	0.1	0.44	10.8	0.0	2.5	4	0	0	4	4	3	0	Protein	of	unknown	function	(DUF2745)
Vpu	PF00558.19	gi|410671320|ref|YP_006923691.1|	-	0.079	12.7	0.1	0.18	11.6	0.1	1.5	1	0	0	1	1	1	0	Vpu	protein
DUF4823	PF16105.5	gi|410671320|ref|YP_006923691.1|	-	0.11	12.4	0.0	0.21	11.4	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4823)
DUF4625	PF15418.6	gi|410671320|ref|YP_006923691.1|	-	0.11	12.7	0.6	1.3	9.2	0.1	2.8	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4625)
FeoB_associated	PF12669.7	gi|410671320|ref|YP_006923691.1|	-	0.13	12.7	2.0	0.2	12.1	1.4	1.7	2	0	0	2	2	1	0	FeoB-associated	Cys-rich	membrane	protein
YtpI	PF14007.6	gi|410671320|ref|YP_006923691.1|	-	0.13	12.4	0.6	0.32	11.1	0.0	1.9	2	0	0	2	2	2	0	YtpI-like	protein
NPCBM_assoc	PF10633.9	gi|410671320|ref|YP_006923691.1|	-	0.14	12.4	0.0	40	4.6	0.0	3.7	4	2	0	4	4	4	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
TMEMspv1-c74-12	PF11044.8	gi|410671320|ref|YP_006923691.1|	-	0.17	11.9	0.5	0.41	10.7	0.5	1.6	1	0	0	1	1	1	0	Plectrovirus	spv1-c74	ORF	12	transmembrane	protein
DUF11	PF01345.18	gi|410671320|ref|YP_006923691.1|	-	0.18	12.1	1.6	36	4.7	0.1	3.6	4	1	0	4	4	4	0	Domain	of	unknown	function	DUF11
OppC_N	PF12911.7	gi|410671320|ref|YP_006923691.1|	-	0.58	10.2	2.5	0.68	10.0	0.1	2.2	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
FtsX	PF02687.21	gi|410671321|ref|YP_006923692.1|	-	1.3e-08	35.1	4.0	1.3e-08	35.1	4.0	3.1	3	0	0	3	3	3	1	FtsX-like	permease	family
ABC_tran	PF00005.27	gi|410671322|ref|YP_006923693.1|	-	3.7e-33	114.9	0.0	5.5e-33	114.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|410671322|ref|YP_006923693.1|	-	2e-10	41.0	0.0	0.00048	20.0	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|410671322|ref|YP_006923693.1|	-	3.3e-08	33.2	0.0	8.5e-08	31.9	0.0	1.6	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|410671322|ref|YP_006923693.1|	-	1.4e-05	25.0	0.0	0.098	12.3	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_25	PF13481.6	gi|410671322|ref|YP_006923693.1|	-	0.00012	21.8	0.1	0.04	13.5	0.1	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_28	PF13521.6	gi|410671322|ref|YP_006923693.1|	-	0.0003	21.1	0.1	0.0012	19.2	0.0	1.9	1	1	0	2	2	2	1	AAA	domain
AAA_29	PF13555.6	gi|410671322|ref|YP_006923693.1|	-	0.00038	20.1	0.1	0.00067	19.4	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|410671322|ref|YP_006923693.1|	-	0.00044	20.8	0.2	0.0011	19.5	0.2	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|410671322|ref|YP_006923693.1|	-	0.00053	20.3	0.1	0.0014	18.9	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|410671322|ref|YP_006923693.1|	-	0.00069	20.2	0.1	0.017	15.7	0.1	2.2	1	1	1	2	2	2	1	AAA	domain
IstB_IS21	PF01695.17	gi|410671322|ref|YP_006923693.1|	-	0.00077	19.2	0.1	0.12	12.0	0.1	2.4	2	1	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_16	PF13191.6	gi|410671322|ref|YP_006923693.1|	-	0.0015	18.9	0.2	0.0024	18.3	0.2	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
SbcCD_C	PF13558.6	gi|410671322|ref|YP_006923693.1|	-	0.0026	18.0	0.1	0.078	13.2	0.1	2.6	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
RsgA_GTPase	PF03193.16	gi|410671322|ref|YP_006923693.1|	-	0.009	15.9	0.1	0.027	14.4	0.0	1.8	2	0	0	2	2	1	1	RsgA	GTPase
AAA_30	PF13604.6	gi|410671322|ref|YP_006923693.1|	-	0.01	15.5	0.0	0.024	14.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|410671322|ref|YP_006923693.1|	-	0.015	15.2	0.0	0.028	14.3	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
DUF3584	PF12128.8	gi|410671322|ref|YP_006923693.1|	-	0.024	12.2	0.0	0.031	11.8	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
FtsK_SpoIIIE	PF01580.18	gi|410671322|ref|YP_006923693.1|	-	0.027	13.8	0.0	0.063	12.6	0.0	1.6	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
NB-ARC	PF00931.22	gi|410671322|ref|YP_006923693.1|	-	0.047	12.9	0.1	0.096	11.9	0.0	1.6	2	0	0	2	2	2	0	NB-ARC	domain
G-alpha	PF00503.20	gi|410671322|ref|YP_006923693.1|	-	0.055	12.6	0.0	0.072	12.2	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
MobB	PF03205.14	gi|410671322|ref|YP_006923693.1|	-	0.07	13.0	0.0	0.15	11.9	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NTPase_1	PF03266.15	gi|410671322|ref|YP_006923693.1|	-	0.087	12.7	0.1	0.75	9.7	0.0	2.2	1	1	1	2	2	2	0	NTPase
AAA_24	PF13479.6	gi|410671322|ref|YP_006923693.1|	-	0.12	12.1	0.3	0.19	11.4	0.1	1.6	2	1	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|410671322|ref|YP_006923693.1|	-	0.12	12.6	0.2	0.19	11.9	0.2	1.7	1	1	0	1	1	1	0	AAA	domain
cobW	PF02492.19	gi|410671322|ref|YP_006923693.1|	-	0.14	11.7	0.1	0.31	10.6	0.0	1.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
CxxCxxCC	PF03692.15	gi|410671323|ref|YP_006923694.1|	-	4.7e-10	40.0	1.7	7.4e-10	39.4	1.7	1.3	1	0	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
CBS	PF00571.28	gi|410671324|ref|YP_006923695.1|	-	9.1e-44	147.7	4.1	3.5e-12	46.6	0.1	4.1	4	0	0	4	4	4	4	CBS	domain
CBS	PF00571.28	gi|410671325|ref|YP_006923696.1|	-	1.7e-54	182.1	8.2	2.8e-15	56.5	0.0	4.2	4	0	0	4	4	4	4	CBS	domain
DUF2591	PF10765.9	gi|410671325|ref|YP_006923696.1|	-	0.094	13.0	0.0	14	6.0	0.0	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2591)
DPPIV_N	PF00930.21	gi|410671326|ref|YP_006923697.1|	-	2.4e-06	26.6	16.0	0.26	10.0	1.3	5.6	4	1	0	5	5	5	5	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
zf-FLZ	PF04570.14	gi|410671326|ref|YP_006923697.1|	-	0.061	12.8	9.5	57	3.3	0.0	5.4	6	0	0	6	6	6	0	zinc-finger	of	the	FCS-type,	C2-C2
UDG	PF03167.19	gi|410671327|ref|YP_006923698.1|	-	3.2e-06	27.2	0.0	4e-06	26.9	0.0	1.2	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
MS_channel	PF00924.18	gi|410671328|ref|YP_006923699.1|	-	9.7e-25	87.3	0.3	2.8e-24	85.8	0.3	1.8	1	1	0	1	1	1	1	Mechanosensitive	ion	channel
Toprim	PF01751.22	gi|410671328|ref|YP_006923699.1|	-	0.13	12.5	0.0	0.24	11.6	0.0	1.5	1	0	0	1	1	1	0	Toprim	domain
TspO_MBR	PF03073.15	gi|410671328|ref|YP_006923699.1|	-	0.49	10.4	7.3	0.85	9.7	7.3	1.3	1	0	0	1	1	1	0	TspO/MBR	family
DUF2070	PF09843.9	gi|410671328|ref|YP_006923699.1|	-	7.1	4.8	16.5	11	4.2	16.5	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
Hexapep	PF00132.24	gi|410671332|ref|YP_006923703.1|	-	3.7e-17	61.3	18.9	4.6e-10	38.8	3.8	4.5	4	1	1	5	5	5	4	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|410671332|ref|YP_006923703.1|	-	3.7e-05	23.4	3.2	3.7e-05	23.4	3.2	3.9	3	1	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
Fucokinase	PF07959.12	gi|410671332|ref|YP_006923703.1|	-	0.044	12.7	0.1	0.06	12.3	0.1	1.4	1	1	0	1	1	1	0	L-fucokinase
RecR	PF02132.15	gi|410671333|ref|YP_006923704.1|	-	0.0001	21.8	2.3	0.0014	18.2	0.1	2.1	1	1	1	2	2	2	1	RecR	protein
FYVE	PF01363.21	gi|410671333|ref|YP_006923704.1|	-	0.011	15.8	0.9	0.012	15.7	0.9	1.1	1	0	0	1	1	1	0	FYVE	zinc	finger
DZR	PF12773.7	gi|410671333|ref|YP_006923704.1|	-	0.012	15.6	1.3	0.014	15.4	1.3	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
FYDLN_acid	PF09538.10	gi|410671333|ref|YP_006923704.1|	-	0.018	15.7	0.2	0.018	15.7	0.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
TackOD1	PF18551.1	gi|410671333|ref|YP_006923704.1|	-	0.018	14.7	0.5	0.019	14.6	0.5	1.1	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
zinc-ribbons_6	PF07191.12	gi|410671333|ref|YP_006923704.1|	-	0.026	14.5	1.8	0.029	14.3	1.8	1.2	1	0	0	1	1	1	0	zinc-ribbons
UPF0547	PF10571.9	gi|410671333|ref|YP_006923704.1|	-	0.038	14.1	4.4	0.63	10.2	1.1	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Cys_rich_CPCC	PF14206.6	gi|410671333|ref|YP_006923704.1|	-	0.038	13.8	1.2	0.04	13.7	1.2	1.1	1	0	0	1	1	1	0	Cysteine-rich	CPCC
zf-ribbon_3	PF13248.6	gi|410671333|ref|YP_006923704.1|	-	0.05	13.0	4.0	0.25	10.8	4.0	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-RING_4	PF14570.6	gi|410671333|ref|YP_006923704.1|	-	0.057	13.2	2.9	0.12	12.2	3.0	1.5	1	1	1	2	2	2	0	RING/Ubox	like	zinc-binding	domain
zf-Dof	PF02701.15	gi|410671333|ref|YP_006923704.1|	-	1.1	9.4	5.6	24	5.2	5.6	2.0	1	1	0	1	1	1	0	Dof	domain,	zinc	finger
DZR	PF12773.7	gi|410671334|ref|YP_006923705.1|	-	0.00073	19.5	0.4	0.00089	19.2	0.4	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-FPG_IleRS	PF06827.14	gi|410671334|ref|YP_006923705.1|	-	0.003	17.4	0.2	0.0041	17.0	0.2	1.2	1	0	0	1	1	1	1	Zinc	finger	found	in	FPG	and	IleRS
OrfB_Zn_ribbon	PF07282.11	gi|410671334|ref|YP_006923705.1|	-	0.015	15.2	0.3	0.019	14.9	0.3	1.1	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.6	gi|410671334|ref|YP_006923705.1|	-	0.022	14.2	1.7	3.1	7.3	0.3	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|410671334|ref|YP_006923705.1|	-	0.077	13.1	2.1	2.4	8.3	0.3	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|410671334|ref|YP_006923705.1|	-	0.27	10.9	1.6	8.2	6.1	0.1	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Zn_ribbon_SprT	PF17283.2	gi|410671334|ref|YP_006923705.1|	-	0.98	9.4	8.1	3.2	7.7	1.3	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
RimK	PF08443.11	gi|410671335|ref|YP_006923706.1|	-	1.5e-43	148.6	0.0	2.3e-43	148.0	0.0	1.2	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
Rimk_N	PF18030.1	gi|410671335|ref|YP_006923706.1|	-	2.3e-17	63.1	0.0	4.5e-17	62.2	0.0	1.4	1	0	0	1	1	1	1	RimK	PreATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|410671335|ref|YP_006923706.1|	-	5.2e-15	55.3	0.0	2.1e-14	53.3	0.0	1.8	2	0	0	2	2	2	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|410671335|ref|YP_006923706.1|	-	9e-07	29.1	0.0	1.4e-06	28.5	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|410671335|ref|YP_006923706.1|	-	5.6e-06	25.8	0.0	0.00026	20.3	0.0	2.6	1	1	1	2	2	2	1	Sugar-transfer	associated	ATP-grasp
ATP-grasp	PF02222.22	gi|410671335|ref|YP_006923706.1|	-	0.00014	21.5	0.0	0.00033	20.3	0.0	1.6	2	0	0	2	2	2	1	ATP-grasp	domain
Synapsin_C	PF02750.14	gi|410671335|ref|YP_006923706.1|	-	0.00088	18.8	0.0	0.0012	18.4	0.0	1.2	1	0	0	1	1	1	1	Synapsin,	ATP	binding	domain
CPSase_L_D2	PF02786.17	gi|410671335|ref|YP_006923706.1|	-	0.0037	16.8	0.0	0.039	13.4	0.0	2.1	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Dala_Dala_lig_C	PF07478.13	gi|410671335|ref|YP_006923706.1|	-	0.025	14.1	0.0	0.22	11.0	0.0	2.2	1	1	0	1	1	1	0	D-ala	D-ala	ligase	C-terminus
ATP-grasp_2	PF08442.10	gi|410671335|ref|YP_006923706.1|	-	0.083	12.4	0.0	0.14	11.7	0.0	1.3	1	0	0	1	1	1	0	ATP-grasp	domain
DUF1724	PF08350.10	gi|410671338|ref|YP_006923709.1|	-	1.9e-23	82.4	2.0	1.9e-23	82.4	2.0	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1724)
TPR_12	PF13424.6	gi|410671339|ref|YP_006923710.1|	-	7e-25	87.1	39.7	1.4e-06	28.5	2.3	9.9	10	2	0	10	10	8	7	Tetratricopeptide	repeat
TPR_10	PF13374.6	gi|410671339|ref|YP_006923710.1|	-	1.2e-19	69.6	35.0	0.0005	19.9	0.1	10.8	11	0	0	11	11	11	6	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|410671339|ref|YP_006923710.1|	-	3.1e-17	61.2	44.9	0.015	15.3	0.3	13.0	15	0	0	15	15	12	5	Tetratricopeptide	repeat
TPR_1	PF00515.28	gi|410671339|ref|YP_006923710.1|	-	2.9e-14	52.2	34.6	0.0048	16.7	0.1	10.1	11	0	0	11	11	10	3	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|410671339|ref|YP_006923710.1|	-	1.9e-11	43.2	40.3	0.012	15.7	0.2	11.7	13	0	0	13	13	12	4	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|410671339|ref|YP_006923710.1|	-	1.7e-10	40.2	24.1	0.2	11.8	0.0	10.6	11	1	1	12	12	10	3	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|410671339|ref|YP_006923710.1|	-	3e-09	36.9	22.1	3	8.9	0.1	11.9	13	1	1	14	14	11	1	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|410671339|ref|YP_006923710.1|	-	3.3e-06	27.1	18.3	1.6	9.3	0.1	10.0	11	0	0	11	11	9	2	Tetratricopeptide	repeat
TOM20_plant	PF06552.12	gi|410671339|ref|YP_006923710.1|	-	0.0008	19.2	0.5	6.1	6.5	0.0	4.8	5	2	0	6	6	6	1	Plant	specific	mitochondrial	import	receptor	subunit	TOM20
TPR_19	PF14559.6	gi|410671339|ref|YP_006923710.1|	-	0.0028	18.1	30.3	3.3	8.3	0.3	10.1	8	2	4	12	12	11	2	Tetratricopeptide	repeat
Sec16_C	PF12931.7	gi|410671339|ref|YP_006923710.1|	-	0.0031	17.2	5.9	6.1	6.4	0.1	5.3	3	2	3	6	6	6	1	Sec23-binding	domain	of	Sec16
TPR_16	PF13432.6	gi|410671339|ref|YP_006923710.1|	-	0.0053	17.4	20.1	6.1	7.6	0.4	8.1	7	3	0	7	7	7	1	Tetratricopeptide	repeat
ETC_C1_NDUFA5	PF04716.14	gi|410671339|ref|YP_006923710.1|	-	0.0069	16.2	0.7	0.12	12.2	0.0	3.6	4	1	0	4	4	3	1	ETC	complex	I	subunit	conserved	region
Fis1_TPR_C	PF14853.6	gi|410671339|ref|YP_006923710.1|	-	0.011	15.8	11.3	3.2	7.9	0.2	6.4	7	0	0	7	7	6	0	Fis1	C-terminal	tetratricopeptide	repeat
T4_Gp59_C	PF08994.10	gi|410671339|ref|YP_006923710.1|	-	0.018	15.7	0.1	27	5.4	0.0	3.6	3	0	0	3	3	3	0	T4	gene	Gp59	loader	of	gp41	DNA	helicase	C-term
Alkyl_sulf_dimr	PF14863.6	gi|410671339|ref|YP_006923710.1|	-	0.033	14.6	2.5	68	3.9	0.0	5.0	5	2	0	5	5	5	0	Alkyl	sulfatase	dimerisation
MSV199	PF10553.9	gi|410671339|ref|YP_006923710.1|	-	0.045	14.0	3.8	0.65	10.2	0.1	3.3	4	0	0	4	4	3	0	MSV199	domain
Glutaminase	PF04960.15	gi|410671339|ref|YP_006923710.1|	-	0.13	11.5	0.9	1.6	7.8	0.0	2.9	3	0	0	3	3	3	0	Glutaminase
DUF2225	PF09986.9	gi|410671339|ref|YP_006923710.1|	-	0.58	9.8	15.2	1.8	8.3	0.4	4.3	3	1	0	4	4	4	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
CdvA	PF18822.1	gi|410671339|ref|YP_006923710.1|	-	0.65	9.8	7.2	0.13	12.1	0.5	3.5	3	1	0	3	3	2	0	CdvA-like	coiled-coil	domain
MIT	PF04212.18	gi|410671339|ref|YP_006923710.1|	-	1.9	8.6	27.6	0.44	10.6	0.8	7.9	5	2	3	8	8	8	0	MIT	(microtubule	interacting	and	transport)	domain
TPR_6	PF13174.6	gi|410671339|ref|YP_006923710.1|	-	7.1	7.5	24.2	12	6.8	0.1	9.8	12	0	0	12	12	10	0	Tetratricopeptide	repeat
DLH	PF01738.18	gi|410671341|ref|YP_006923712.1|	-	2e-10	40.6	0.0	2.4e-10	40.4	0.0	1.1	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Abhydrolase_1	PF00561.20	gi|410671341|ref|YP_006923712.1|	-	1.2e-08	35.0	0.0	5e-06	26.4	0.0	2.3	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|410671341|ref|YP_006923712.1|	-	2.5e-07	30.2	0.1	0.025	13.9	0.0	3.0	3	0	0	3	3	3	3	Serine	aminopeptidase,	S33
Peptidase_S9	PF00326.21	gi|410671341|ref|YP_006923712.1|	-	2.1e-05	24.1	0.1	0.16	11.4	0.1	2.6	2	1	1	3	3	3	2	Prolyl	oligopeptidase	family
BAAT_C	PF08840.11	gi|410671341|ref|YP_006923712.1|	-	0.00018	21.5	0.0	0.0027	17.6	0.0	2.0	1	1	0	2	2	2	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Abhydrolase_6	PF12697.7	gi|410671341|ref|YP_006923712.1|	-	0.0008	20.1	1.3	0.19	12.3	1.2	2.1	1	1	1	2	2	2	1	Alpha/beta	hydrolase	family
Peptidase_S15	PF02129.18	gi|410671341|ref|YP_006923712.1|	-	0.0018	18.0	0.1	0.014	15.1	0.1	1.9	1	1	1	2	2	2	1	X-Pro	dipeptidyl-peptidase	(S15	family)
Abhydrolase_2	PF02230.16	gi|410671341|ref|YP_006923712.1|	-	0.036	13.9	0.0	2.4	7.9	0.0	2.1	2	0	0	2	2	2	0	Phospholipase/Carboxylesterase
Esterase	PF00756.20	gi|410671341|ref|YP_006923712.1|	-	0.15	11.7	0.0	0.26	10.9	0.0	1.4	2	0	0	2	2	2	0	Putative	esterase
Pribosyltran	PF00156.27	gi|410671342|ref|YP_006923713.1|	-	3e-23	82.1	0.0	4.7e-23	81.4	0.0	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|410671342|ref|YP_006923713.1|	-	0.0024	17.3	0.1	0.0042	16.5	0.1	1.4	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|410671342|ref|YP_006923713.1|	-	0.0028	17.2	0.0	0.005	16.4	0.0	1.4	1	0	0	1	1	1	1	Phosphoribosyl	transferase
Unstab_antitox	PF09720.10	gi|410671342|ref|YP_006923713.1|	-	0.11	12.5	0.1	0.22	11.6	0.1	1.5	1	0	0	1	1	1	0	Putative	addiction	module	component
TPR_1	PF00515.28	gi|410671343|ref|YP_006923714.1|	-	1.4e-143	461.5	48.0	3.1e-09	36.3	0.0	24.1	25	0	0	25	25	24	22	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|410671343|ref|YP_006923714.1|	-	3.6e-115	367.0	41.7	2.3e-06	27.3	1.0	24.5	25	0	0	25	25	25	20	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|410671343|ref|YP_006923714.1|	-	1.2e-87	287.3	55.7	7.8e-08	31.9	0.2	24.3	14	8	12	26	26	26	16	TPR	repeat
TPR_16	PF13432.6	gi|410671343|ref|YP_006923714.1|	-	1.3e-77	256.2	19.0	1.4e-07	32.1	0.2	15.3	9	3	6	16	16	16	15	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|410671343|ref|YP_006923714.1|	-	2.3e-76	245.7	45.2	5.9e-07	29.2	0.0	21.9	23	0	0	23	23	22	16	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|410671343|ref|YP_006923714.1|	-	1.7e-69	225.4	39.7	0.0002	21.5	0.0	24.1	25	0	0	25	25	24	15	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|410671343|ref|YP_006923714.1|	-	4e-66	214.0	22.0	0.00028	21.5	0.1	23.0	5	4	20	25	25	24	17	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|410671343|ref|YP_006923714.1|	-	3.2e-53	178.1	27.6	2.2e-05	24.8	0.0	15.5	9	5	9	19	19	18	12	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|410671343|ref|YP_006923714.1|	-	2.2e-51	171.9	11.7	5.2e-06	26.5	0.0	15.7	7	4	10	18	18	18	12	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|410671343|ref|YP_006923714.1|	-	1.3e-47	156.4	31.3	0.017	15.2	0.1	21.7	20	2	3	23	23	23	11	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|410671343|ref|YP_006923714.1|	-	2.1e-47	159.3	38.2	0.0002	21.6	0.1	16.6	12	5	4	16	16	16	13	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|410671343|ref|YP_006923714.1|	-	6.6e-43	142.5	38.9	0.0067	17.0	0.5	23.1	25	0	0	25	25	24	7	Tetratricopeptide	repeat
ANAPC3	PF12895.7	gi|410671343|ref|YP_006923714.1|	-	2e-27	95.2	28.8	0.00061	20.0	0.0	11.9	6	4	10	16	16	15	11	Anaphase-promoting	complex,	cyclosome,	subunit	3
Fis1_TPR_C	PF14853.6	gi|410671343|ref|YP_006923714.1|	-	3.9e-21	74.9	33.9	0.014	15.5	0.0	15.2	13	1	4	17	17	16	7	Fis1	C-terminal	tetratricopeptide	repeat
NARP1	PF12569.8	gi|410671343|ref|YP_006923714.1|	-	4.2e-12	45.8	8.7	0.069	12.1	0.0	8.8	6	3	3	9	9	9	2	NMDA	receptor-regulated	protein	1
DUF3856	PF12968.7	gi|410671343|ref|YP_006923714.1|	-	6.9e-12	45.6	16.1	0.79	9.8	0.0	12.8	9	7	5	14	14	12	1	Domain	of	Unknown	Function	(DUF3856)
MIT	PF04212.18	gi|410671343|ref|YP_006923714.1|	-	1e-11	44.7	50.0	0.0012	18.9	0.5	13.9	16	1	0	16	16	13	4	MIT	(microtubule	interacting	and	transport)	domain
Alkyl_sulf_dimr	PF14863.6	gi|410671343|ref|YP_006923714.1|	-	2.9e-10	40.8	5.9	0.62	10.5	0.0	6.3	7	0	0	7	7	5	3	Alkyl	sulfatase	dimerisation
TPR_15	PF13429.6	gi|410671343|ref|YP_006923714.1|	-	1.4e-09	37.5	16.3	0.021	14.0	0.1	10.0	5	3	7	12	12	12	2	Tetratricopeptide	repeat
TPR_4	PF07721.14	gi|410671343|ref|YP_006923714.1|	-	1.2e-08	34.7	0.8	33	5.5	0.1	9.8	11	0	0	11	11	8	0	Tetratricopeptide	repeat
TPR_10	PF13374.6	gi|410671343|ref|YP_006923714.1|	-	1.1e-07	31.5	27.6	3.1	7.8	0.0	14.4	18	0	0	18	18	16	1	Tetratricopeptide	repeat
BTAD	PF03704.17	gi|410671343|ref|YP_006923714.1|	-	1.2e-07	32.3	14.4	2	8.9	0.2	9.1	7	4	3	10	10	10	3	Bacterial	transcriptional	activator	domain
Coatomer_E	PF04733.14	gi|410671343|ref|YP_006923714.1|	-	1.7e-05	24.4	2.4	0.057	12.8	0.1	5.1	5	0	0	5	5	5	1	Coatomer	epsilon	subunit
PPTA	PF01239.22	gi|410671343|ref|YP_006923714.1|	-	0.00011	21.8	0.1	1.2	9.0	0.1	4.2	3	0	0	3	3	3	1	Protein	prenyltransferase	alpha	subunit	repeat
TPR_5	PF12688.7	gi|410671343|ref|YP_006923714.1|	-	0.00014	22.1	4.6	11	6.3	0.0	8.4	9	2	2	11	11	9	0	Tetratrico	peptide	repeat
TPR_20	PF14561.6	gi|410671343|ref|YP_006923714.1|	-	0.00066	20.0	4.8	6.9	7.1	0.0	6.0	7	0	0	7	7	4	0	Tetratricopeptide	repeat
NRBF2_MIT	PF17169.4	gi|410671343|ref|YP_006923714.1|	-	0.0013	18.9	4.0	2.8	8.2	0.2	6.0	8	0	0	8	8	7	1	MIT	domain	of	nuclear	receptor-binding	factor	2
PknG_TPR	PF16918.5	gi|410671343|ref|YP_006923714.1|	-	0.0072	15.1	7.6	1.8	7.2	0.2	4.7	5	0	0	5	5	5	1	Protein	kinase	G	tetratricopeptide	repeat
DUF627	PF04781.12	gi|410671343|ref|YP_006923714.1|	-	0.0082	16.1	3.8	21	5.2	0.2	6.0	5	2	2	7	7	7	0	Protein	of	unknown	function	(DUF627)
RPN7	PF10602.9	gi|410671343|ref|YP_006923714.1|	-	0.012	15.4	8.3	23	4.6	0.1	6.7	6	2	0	6	6	6	0	26S	proteasome	subunit	RPN7
PPR	PF01535.20	gi|410671343|ref|YP_006923714.1|	-	0.012	15.8	6.8	61	4.2	0.0	8.3	12	0	0	12	12	5	0	PPR	repeat
Aida_N	PF08910.10	gi|410671343|ref|YP_006923714.1|	-	0.018	15.4	2.2	12	6.4	0.2	5.5	6	1	1	7	7	5	0	Aida	N-terminus
Imm31	PF15591.6	gi|410671343|ref|YP_006923714.1|	-	0.28	11.1	0.9	3.5	7.5	0.1	3.2	3	1	1	4	4	2	0	Immunity	protein	31
TPR_3	PF07720.12	gi|410671343|ref|YP_006923714.1|	-	0.51	10.4	42.9	1	9.4	0.7	11.0	14	0	0	14	14	10	0	Tetratricopeptide	repeat
Sel1	PF08238.12	gi|410671343|ref|YP_006923714.1|	-	2.7	8.8	13.0	23	5.9	0.0	6.9	6	0	0	6	6	5	0	Sel1	repeat
HAD_2	PF13419.6	gi|410671344|ref|YP_006923715.1|	-	2.7e-28	99.3	0.0	3.2e-28	99.0	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|410671344|ref|YP_006923715.1|	-	3.8e-15	56.7	0.0	1.1e-14	55.2	0.0	1.6	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|410671344|ref|YP_006923715.1|	-	0.00066	19.7	0.0	0.0014	18.7	0.0	1.5	1	0	0	1	1	1	1	HAD-hyrolase-like
NIF	PF03031.18	gi|410671344|ref|YP_006923715.1|	-	0.00095	19.0	0.0	0.0058	16.4	0.0	1.9	1	1	0	1	1	1	1	NLI	interacting	factor-like	phosphatase
HAD	PF12710.7	gi|410671344|ref|YP_006923715.1|	-	0.0025	18.3	0.0	0.0035	17.8	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
NT5C	PF06941.12	gi|410671344|ref|YP_006923715.1|	-	0.057	13.3	0.0	0.18	11.7	0.0	1.8	1	1	0	1	1	1	0	5'	nucleotidase,	deoxy	(Pyrimidine),	cytosolic	type	C	protein	(NT5C)
NAGLU_C	PF12972.7	gi|410671344|ref|YP_006923715.1|	-	0.11	12.0	0.0	0.15	11.5	0.0	1.1	1	0	0	1	1	1	0	Alpha-N-acetylglucosaminidase	(NAGLU)	C-terminal	domain
TPR_14	PF13428.6	gi|410671345|ref|YP_006923716.1|	-	1.9e-07	31.3	1.3	0.87	10.6	0.0	4.3	2	1	2	4	4	4	2	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|410671345|ref|YP_006923716.1|	-	4.2e-07	29.6	0.4	0.69	10.2	0.0	4.4	4	0	0	4	4	4	2	Tetratricopeptide	repeat
TPR_1	PF00515.28	gi|410671345|ref|YP_006923716.1|	-	7.4e-07	28.7	0.6	0.24	11.3	0.0	3.7	4	0	0	4	4	4	2	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|410671345|ref|YP_006923716.1|	-	1.4e-06	28.7	0.2	0.00029	21.3	0.0	3.0	3	0	0	3	3	3	1	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|410671345|ref|YP_006923716.1|	-	1.9e-06	28.1	0.4	4.5	8.1	0.0	4.6	4	0	0	4	4	4	2	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|410671345|ref|YP_006923716.1|	-	1e-05	25.3	0.2	0.25	11.7	0.0	3.7	3	0	0	3	3	3	1	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|410671345|ref|YP_006923716.1|	-	0.00022	21.8	0.0	0.19	12.4	0.0	2.4	2	0	0	2	2	2	2	Tetratricopeptide	repeat
TPR_5	PF12688.7	gi|410671345|ref|YP_006923716.1|	-	0.00049	20.3	0.3	1	9.6	0.0	2.3	1	1	1	2	2	2	2	Tetratrico	peptide	repeat
NARP1	PF12569.8	gi|410671345|ref|YP_006923716.1|	-	0.0012	17.8	0.2	0.0017	17.3	0.2	1.2	1	0	0	1	1	1	1	NMDA	receptor-regulated	protein	1
TPR_10	PF13374.6	gi|410671345|ref|YP_006923716.1|	-	0.0092	15.8	0.1	56	3.8	0.0	3.9	4	0	0	4	4	4	0	Tetratricopeptide	repeat
PknG_TPR	PF16918.5	gi|410671345|ref|YP_006923716.1|	-	0.031	13.0	0.0	0.042	12.6	0.0	1.3	1	0	0	1	1	1	0	Protein	kinase	G	tetratricopeptide	repeat
TPR_9	PF13371.6	gi|410671345|ref|YP_006923716.1|	-	0.037	14.2	0.0	3.6	7.8	0.0	2.7	3	0	0	3	3	3	0	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|410671345|ref|YP_006923716.1|	-	0.074	13.1	0.4	53	4.2	0.0	3.6	4	0	0	4	4	4	0	Tetratricopeptide	repeat
ATP13	PF12921.7	gi|410671345|ref|YP_006923716.1|	-	0.19	11.6	0.0	0.36	10.7	0.0	1.5	1	0	0	1	1	1	0	Mitochondrial	ATPase	expression
PALP	PF00291.25	gi|410671346|ref|YP_006923717.1|	-	1e-32	113.8	0.1	1.2e-32	113.5	0.1	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
PK_C	PF02887.16	gi|410671346|ref|YP_006923717.1|	-	0.02	15.1	0.1	0.17	12.1	0.0	2.1	2	0	0	2	2	2	0	Pyruvate	kinase,	alpha/beta	domain
ABC_tran	PF00005.27	gi|410671347|ref|YP_006923718.1|	-	8e-14	52.3	0.0	1.3e-13	51.7	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|410671347|ref|YP_006923718.1|	-	1.4e-09	38.2	0.2	0.00012	22.0	0.0	2.8	2	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_30	PF13604.6	gi|410671347|ref|YP_006923718.1|	-	8.4e-06	25.6	0.0	1.3e-05	25.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|410671347|ref|YP_006923718.1|	-	1.6e-05	24.6	0.1	4.2e-05	23.2	0.1	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|410671347|ref|YP_006923718.1|	-	1.8e-05	25.2	0.0	3.2e-05	24.4	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|410671347|ref|YP_006923718.1|	-	4.7e-05	23.7	0.0	0.00041	20.6	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|410671347|ref|YP_006923718.1|	-	6.9e-05	23.4	0.0	0.00011	22.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|410671347|ref|YP_006923718.1|	-	0.00074	19.0	0.2	0.11	11.9	0.1	2.3	1	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
NTPase_1	PF03266.15	gi|410671347|ref|YP_006923718.1|	-	0.0066	16.4	0.9	1.5	8.7	0.1	2.3	2	0	0	2	2	2	1	NTPase
AAA_14	PF13173.6	gi|410671347|ref|YP_006923718.1|	-	0.0083	16.2	0.1	0.26	11.3	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
ATPase_2	PF01637.18	gi|410671347|ref|YP_006923718.1|	-	0.0086	16.0	0.6	0.1	12.5	0.6	2.1	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
RsgA_GTPase	PF03193.16	gi|410671347|ref|YP_006923718.1|	-	0.011	15.6	0.1	0.025	14.5	0.1	1.6	1	1	0	1	1	1	0	RsgA	GTPase
AAA_2	PF07724.14	gi|410671347|ref|YP_006923718.1|	-	0.015	15.4	0.0	0.11	12.6	0.0	2.0	1	1	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
AAA_18	PF13238.6	gi|410671347|ref|YP_006923718.1|	-	0.016	15.7	0.0	0.052	14.1	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.6	gi|410671347|ref|YP_006923718.1|	-	0.019	15.3	0.0	0.041	14.2	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|410671347|ref|YP_006923718.1|	-	0.04	13.1	1.0	0.082	12.1	0.1	1.8	2	1	1	3	3	3	0	NB-ARC	domain
MMR_HSR1	PF01926.23	gi|410671347|ref|YP_006923718.1|	-	0.057	13.5	0.3	0.25	11.4	0.1	2.0	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
cobW	PF02492.19	gi|410671347|ref|YP_006923718.1|	-	0.059	13.0	0.1	0.22	11.1	0.0	2.0	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Adeno_IVa2	PF02456.15	gi|410671347|ref|YP_006923718.1|	-	0.078	11.8	0.0	0.12	11.2	0.0	1.3	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
AAA_5	PF07728.14	gi|410671347|ref|YP_006923718.1|	-	0.088	12.8	0.1	2.4	8.2	0.0	2.4	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|410671347|ref|YP_006923718.1|	-	0.092	13.2	0.2	2.4	8.6	0.2	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.12	gi|410671347|ref|YP_006923718.1|	-	0.11	12.4	0.0	0.25	11.2	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA_33	PF13671.6	gi|410671347|ref|YP_006923718.1|	-	0.13	12.4	0.1	0.51	10.5	0.1	2.1	2	1	0	2	2	2	0	AAA	domain
cobW	PF02492.19	gi|410671348|ref|YP_006923719.1|	-	1.3e-12	47.7	0.0	3.6e-12	46.2	0.0	1.7	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
MeaB	PF03308.16	gi|410671348|ref|YP_006923719.1|	-	0.00024	20.2	0.4	0.0056	15.7	0.1	2.2	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_19	PF13245.6	gi|410671348|ref|YP_006923719.1|	-	0.00041	20.7	0.1	0.00079	19.8	0.1	1.5	1	0	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|410671348|ref|YP_006923719.1|	-	0.004	16.5	0.0	0.0075	15.6	0.0	1.3	1	0	0	1	1	1	1	Zeta	toxin
CbiA	PF01656.23	gi|410671348|ref|YP_006923719.1|	-	0.0053	16.8	0.3	0.0094	16.0	0.2	1.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
SRP54	PF00448.22	gi|410671348|ref|YP_006923719.1|	-	0.0089	15.7	0.0	0.013	15.1	0.0	1.4	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
NACHT	PF05729.12	gi|410671348|ref|YP_006923719.1|	-	0.017	15.0	0.0	0.038	13.9	0.0	1.5	2	0	0	2	2	2	0	NACHT	domain
MobB	PF03205.14	gi|410671348|ref|YP_006923719.1|	-	0.018	14.9	0.0	0.029	14.3	0.0	1.3	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_16	PF13191.6	gi|410671348|ref|YP_006923719.1|	-	0.026	14.9	0.0	0.04	14.3	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
KTI12	PF08433.10	gi|410671348|ref|YP_006923719.1|	-	0.032	13.7	0.0	0.053	13.0	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_25	PF13481.6	gi|410671348|ref|YP_006923719.1|	-	0.04	13.5	0.1	0.059	12.9	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|410671348|ref|YP_006923719.1|	-	0.06	13.9	0.1	0.09	13.3	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
UvrD-helicase	PF00580.21	gi|410671348|ref|YP_006923719.1|	-	0.068	12.7	0.3	0.088	12.3	0.3	1.1	1	0	0	1	1	1	0	UvrD/REP	helicase	N-terminal	domain
DnaB_C	PF03796.15	gi|410671348|ref|YP_006923719.1|	-	0.069	12.5	0.0	0.11	11.8	0.0	1.3	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
ResIII	PF04851.15	gi|410671348|ref|YP_006923719.1|	-	0.08	12.9	0.0	0.16	12.0	0.0	1.4	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
TK	PF00265.18	gi|410671348|ref|YP_006923719.1|	-	0.1	12.4	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	Thymidine	kinase
DUF2075	PF09848.9	gi|410671348|ref|YP_006923719.1|	-	0.11	11.7	0.0	0.14	11.4	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Viral_helicase1	PF01443.18	gi|410671348|ref|YP_006923719.1|	-	0.13	12.0	0.0	0.18	11.5	0.0	1.2	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_11	PF13086.6	gi|410671348|ref|YP_006923719.1|	-	0.2	11.4	0.0	0.25	11.1	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
MipZ	PF09140.11	gi|410671348|ref|YP_006923719.1|	-	0.2	10.9	0.0	0.31	10.3	0.0	1.2	1	0	0	1	1	1	0	ATPase	MipZ
TrwB_AAD_bind	PF10412.9	gi|410671348|ref|YP_006923719.1|	-	0.21	10.5	0.0	0.29	10.0	0.0	1.1	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
FeS	PF04060.13	gi|410671349|ref|YP_006923720.1|	-	4.2e-10	39.1	0.6	4.2e-10	39.1	0.6	1.8	2	0	0	2	2	2	1	Putative	Fe-S	cluster
TPP_enzyme_N	PF02776.18	gi|410671350|ref|YP_006923721.1|	-	6.2e-12	45.5	0.0	7.4e-12	45.2	0.0	1.0	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
POR_N	PF01855.19	gi|410671350|ref|YP_006923721.1|	-	0.0081	15.9	0.0	0.011	15.5	0.0	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
HipN	PF18253.1	gi|410671350|ref|YP_006923721.1|	-	0.16	11.7	0.1	0.35	10.6	0.1	1.5	1	0	0	1	1	1	0	Hsp70-interacting	protein	N	N-terminal	domain
TPP_enzyme_C	PF02775.21	gi|410671351|ref|YP_006923722.1|	-	4.7e-18	65.4	0.1	8.1e-18	64.7	0.1	1.4	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
HcyBio	PF01837.16	gi|410671352|ref|YP_006923723.1|	-	1.5e-105	352.9	0.0	1.8e-105	352.7	0.0	1.0	1	0	0	1	1	1	1	Homocysteine	biosynthesis	enzyme,	sulfur-incorporation
Fer4_10	PF13237.6	gi|410671352|ref|YP_006923723.1|	-	3e-06	27.2	11.3	6.4e-06	26.2	11.3	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410671352|ref|YP_006923723.1|	-	0.00016	21.8	15.8	0.00031	20.9	15.8	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|410671352|ref|YP_006923723.1|	-	0.0006	20.4	14.7	0.0015	19.1	14.7	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410671352|ref|YP_006923723.1|	-	0.00082	19.5	11.4	0.002	18.2	11.4	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410671352|ref|YP_006923723.1|	-	0.0045	17.0	14.4	0.025	14.7	6.1	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|410671352|ref|YP_006923723.1|	-	0.0047	16.7	12.3	0.024	14.4	0.8	3.3	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|410671352|ref|YP_006923723.1|	-	0.018	15.5	14.7	0.06	13.9	0.6	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|410671352|ref|YP_006923723.1|	-	0.027	15.0	17.2	40	4.8	6.5	2.4	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|410671352|ref|YP_006923723.1|	-	0.028	14.9	1.8	0.028	14.9	1.8	2.4	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410671352|ref|YP_006923723.1|	-	0.064	14.2	12.6	0.25	12.3	0.5	2.7	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|410671352|ref|YP_006923723.1|	-	0.077	13.1	16.3	0.11	12.7	2.8	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DUF3600	PF12207.8	gi|410671353|ref|YP_006923724.1|	-	0.047	13.6	0.1	2.6	8.0	0.1	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3600)
HMMR_N	PF15905.5	gi|410671353|ref|YP_006923724.1|	-	0.086	12.3	2.6	0.13	11.7	2.6	1.3	1	0	0	1	1	1	0	Hyaluronan	mediated	motility	receptor	N-terminal
bPH_3	PF14470.6	gi|410671353|ref|YP_006923724.1|	-	0.1	12.9	1.4	0.37	11.2	0.2	2.5	2	1	0	2	2	2	0	Bacterial	PH	domain
COG2	PF06148.11	gi|410671353|ref|YP_006923724.1|	-	0.48	10.5	3.4	3.6	7.7	0.5	2.8	2	1	1	3	3	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
tRNA-synt_1b	PF00579.25	gi|410671354|ref|YP_006923725.1|	-	2.8e-54	184.4	0.0	3.5e-54	184.1	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
tRNA-synt_1f	PF01921.18	gi|410671354|ref|YP_006923725.1|	-	0.0045	16.0	0.0	1.8	7.4	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(K)
Msg2_C	PF12373.8	gi|410671354|ref|YP_006923725.1|	-	3	7.3	4.2	1.1	8.8	1.2	1.8	2	0	0	2	2	2	0	Major	surface	glycoprotein	2	C	terminal
Thg1	PF04446.12	gi|410671355|ref|YP_006923726.1|	-	3.1e-24	85.4	0.1	4.2e-24	85.0	0.1	1.2	1	0	0	1	1	1	1	tRNAHis	guanylyltransferase
Thg1C	PF14413.6	gi|410671355|ref|YP_006923726.1|	-	8.4e-08	32.4	0.0	1.1e-07	32.0	0.0	1.2	1	0	0	1	1	1	1	Thg1	C	terminal	domain
PRC	PF05239.16	gi|410671356|ref|YP_006923727.1|	-	1.2e-14	54.1	3.7	1.4e-14	53.9	3.7	1.0	1	0	0	1	1	1	1	PRC-barrel	domain
Rab15_effector	PF15208.6	gi|410671356|ref|YP_006923727.1|	-	0.14	11.4	0.0	0.17	11.1	0.0	1.1	1	0	0	1	1	1	0	Rab15	effector
Ldh_1_N	PF00056.23	gi|410671358|ref|YP_006923729.1|	-	4.3e-36	124.1	2.2	4.3e-36	124.1	2.2	1.6	2	0	0	2	2	2	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Ldh_1_C	PF02866.18	gi|410671358|ref|YP_006923729.1|	-	3e-27	95.6	0.0	7.2e-27	94.3	0.0	1.6	2	0	0	2	2	2	1	lactate/malate	dehydrogenase,	alpha/beta	C-terminal	domain
UDPG_MGDP_dh_N	PF03721.14	gi|410671358|ref|YP_006923729.1|	-	0.00052	19.6	1.9	0.0011	18.6	2.0	1.5	1	1	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3Beta_HSD	PF01073.19	gi|410671358|ref|YP_006923729.1|	-	0.0011	18.0	0.5	0.0016	17.5	0.5	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
F420_oxidored	PF03807.17	gi|410671358|ref|YP_006923729.1|	-	0.0078	16.8	1.4	0.044	14.4	0.7	2.4	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
Glyco_hydro_4	PF02056.16	gi|410671358|ref|YP_006923729.1|	-	0.017	14.7	2.3	0.062	12.9	0.1	2.5	1	1	1	2	2	2	0	Family	4	glycosyl	hydrolase
3HCDH_N	PF02737.18	gi|410671358|ref|YP_006923729.1|	-	0.034	14.1	1.1	0.42	10.5	0.6	2.4	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|410671358|ref|YP_006923729.1|	-	0.056	12.8	0.1	0.1	12.0	0.1	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
polyprenyl_synt	PF00348.17	gi|410671358|ref|YP_006923729.1|	-	0.069	12.2	0.0	0.17	11.0	0.0	1.7	2	0	0	2	2	2	0	Polyprenyl	synthetase
NAD_binding_8	PF13450.6	gi|410671358|ref|YP_006923729.1|	-	0.081	13.2	0.2	0.17	12.1	0.2	1.6	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
NAD_binding_7	PF13241.6	gi|410671358|ref|YP_006923729.1|	-	0.14	12.6	0.2	0.34	11.4	0.2	1.7	1	0	0	1	1	1	0	Putative	NAD(P)-binding
RNase_H_2	PF13482.6	gi|410671359|ref|YP_006923730.1|	-	1.9e-36	125.5	0.0	3.2e-36	124.8	0.0	1.3	1	0	0	1	1	1	1	RNase_H	superfamily
DNA_pol_B_exo1	PF03104.19	gi|410671359|ref|YP_006923730.1|	-	0.0099	15.0	0.0	0.012	14.7	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
DNA_pol_B_exo2	PF10108.9	gi|410671359|ref|YP_006923730.1|	-	0.042	13.5	0.0	0.83	9.3	0.0	2.1	1	1	0	2	2	2	0	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
UvrC_HhH_N	PF08459.11	gi|410671360|ref|YP_006923731.1|	-	1.4e-55	187.4	0.0	3.1e-55	186.3	0.0	1.6	1	0	0	1	1	1	1	UvrC	Helix-hairpin-helix	N-terminal
HHH_2	PF12826.7	gi|410671360|ref|YP_006923731.1|	-	2.7e-12	46.6	0.0	1.4e-11	44.3	0.0	2.3	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|410671360|ref|YP_006923731.1|	-	9.6e-11	42.1	0.1	2.7e-10	40.7	0.1	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
GIY-YIG	PF01541.24	gi|410671360|ref|YP_006923731.1|	-	2.4e-10	40.5	0.0	5.9e-10	39.3	0.0	1.7	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
UVR	PF02151.19	gi|410671360|ref|YP_006923731.1|	-	4.5e-09	35.8	0.2	1e-08	34.7	0.2	1.6	1	0	0	1	1	1	1	UvrB/uvrC	motif
HHH	PF00633.23	gi|410671360|ref|YP_006923731.1|	-	9.8e-06	25.2	0.1	0.059	13.3	0.0	2.8	2	0	0	2	2	2	2	Helix-hairpin-helix	motif
HHH_8	PF14716.6	gi|410671360|ref|YP_006923731.1|	-	0.0011	19.3	0.1	0.057	13.8	0.0	2.9	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
5_3_exonuc	PF01367.20	gi|410671360|ref|YP_006923731.1|	-	0.0012	19.4	0.2	0.048	14.3	0.1	2.9	2	0	0	2	2	2	1	5'-3'	exonuclease,	C-terminal	SAM	fold
HHH_3	PF12836.7	gi|410671360|ref|YP_006923731.1|	-	0.0015	18.8	0.3	0.0099	16.1	0.1	2.4	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
COOH-NH2_lig	PF14395.6	gi|410671360|ref|YP_006923731.1|	-	0.064	12.5	0.2	0.28	10.4	0.0	1.9	2	0	0	2	2	2	0	Phage	phiEco32-like	COOH.NH2	ligase-type	2
IMS_HHH	PF11798.8	gi|410671360|ref|YP_006923731.1|	-	0.15	12.4	0.0	14	6.2	0.0	2.8	2	0	0	2	2	2	0	IMS	family	HHH	motif
GPI	PF06560.11	gi|410671361|ref|YP_006923732.1|	-	1.8e-43	147.9	1.1	2.3e-43	147.6	1.1	1.1	1	0	0	1	1	1	1	Glucose-6-phosphate	isomerase	(GPI)
Cupin_2	PF07883.11	gi|410671361|ref|YP_006923732.1|	-	1.4e-05	24.7	0.1	3e-05	23.6	0.1	1.6	1	0	0	1	1	1	1	Cupin	domain
Cupin_1	PF00190.22	gi|410671361|ref|YP_006923732.1|	-	0.0029	17.2	0.0	0.0045	16.6	0.0	1.2	1	0	0	1	1	1	1	Cupin
AraC_binding	PF02311.19	gi|410671361|ref|YP_006923732.1|	-	0.0099	15.8	0.1	0.017	15.0	0.1	1.4	1	1	0	1	1	1	1	AraC-like	ligand	binding	domain
ARD	PF03079.14	gi|410671361|ref|YP_006923732.1|	-	0.16	12.2	0.0	0.21	11.8	0.0	1.3	1	0	0	1	1	1	0	ARD/ARD'	family
NRD1_2	PF01995.16	gi|410671362|ref|YP_006923733.1|	-	2.6e-98	328.1	3.1	2.9e-98	327.9	3.1	1.0	1	0	0	1	1	1	1	NrpR	regulatory	domains	NRD1	and	2
DHHA1	PF02272.19	gi|410671363|ref|YP_006923734.1|	-	5.8e-17	62.4	0.8	1.5e-16	61.0	0.5	1.9	2	0	0	2	2	2	1	DHHA1	domain
DHH	PF01368.20	gi|410671363|ref|YP_006923734.1|	-	0.0062	16.8	0.1	0.012	15.8	0.1	1.5	1	0	0	1	1	1	1	DHH	family
B12-binding	PF02310.19	gi|410671363|ref|YP_006923734.1|	-	0.0082	16.2	0.0	0.022	14.8	0.0	1.7	1	0	0	1	1	1	1	B12	binding	domain
SelA	PF03841.13	gi|410671363|ref|YP_006923734.1|	-	0.071	12.1	0.0	0.15	11.0	0.0	1.5	1	0	0	1	1	1	0	L-seryl-tRNA	selenium	transferase
Hjc	PF01870.18	gi|410671364|ref|YP_006923735.1|	-	0.025	14.6	0.0	0.087	12.8	0.0	2.0	1	1	1	2	2	2	0	Archaeal	holliday	junction	resolvase	(hjc)
RecU	PF03838.14	gi|410671364|ref|YP_006923735.1|	-	0.047	13.7	0.1	0.074	13.1	0.1	1.5	1	1	0	1	1	1	0	Recombination	protein	U
TssN	PF17555.2	gi|410671365|ref|YP_006923736.1|	-	0.058	12.8	1.5	0.059	12.8	1.5	1.0	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssN
DUF3382	PF11862.8	gi|410671365|ref|YP_006923736.1|	-	0.067	13.5	1.4	0.067	13.5	1.4	1.8	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3382)
UPF0047	PF01894.17	gi|410671366|ref|YP_006923737.1|	-	7.8e-35	119.5	0.0	9.3e-35	119.3	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
SIS_2	PF13580.6	gi|410671366|ref|YP_006923737.1|	-	0.084	12.9	0.1	1.3	9.0	0.0	2.1	2	0	0	2	2	2	0	SIS	domain
DUF1699	PF08004.11	gi|410671367|ref|YP_006923738.1|	-	3.3e-64	214.4	0.2	3.7e-64	214.2	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1699)
ECF-ribofla_trS	PF07155.12	gi|410671368|ref|YP_006923739.1|	-	0.012	15.6	19.1	0.013	15.6	4.9	2.2	1	1	1	2	2	2	0	ECF-type	riboflavin	transporter,	S	component
AAA_31	PF13614.6	gi|410671369|ref|YP_006923740.1|	-	5.5e-17	62.2	0.1	1.7e-16	60.6	0.0	1.7	1	1	1	2	2	2	1	AAA	domain
ParA	PF10609.9	gi|410671369|ref|YP_006923740.1|	-	8.4e-17	61.4	1.7	1e-12	48.1	0.1	2.5	2	1	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|410671369|ref|YP_006923740.1|	-	2.4e-12	47.0	0.0	5.6e-12	45.8	0.0	1.9	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.11	gi|410671369|ref|YP_006923740.1|	-	1.5e-07	31.0	0.1	1.3e-06	27.9	0.1	2.0	2	0	0	2	2	2	1	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|410671369|ref|YP_006923740.1|	-	2.6e-07	30.4	0.0	3.6e-07	29.9	0.0	1.2	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
VirC1	PF07015.11	gi|410671369|ref|YP_006923740.1|	-	0.00083	18.7	0.0	0.014	14.7	0.0	2.2	2	0	0	2	2	2	1	VirC1	protein
ArsA_ATPase	PF02374.15	gi|410671369|ref|YP_006923740.1|	-	0.022	14.0	0.2	0.076	12.2	0.2	1.9	1	1	0	1	1	1	0	Anion-transporting	ATPase
AAA_25	PF13481.6	gi|410671369|ref|YP_006923740.1|	-	0.026	14.1	0.1	0.057	13.0	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
ResIII	PF04851.15	gi|410671369|ref|YP_006923740.1|	-	0.027	14.5	0.4	9.5	6.2	0.0	2.9	2	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
CLP1_P	PF16575.5	gi|410671369|ref|YP_006923740.1|	-	0.031	14.1	0.1	0.092	12.5	0.0	1.8	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
SRP54	PF00448.22	gi|410671369|ref|YP_006923740.1|	-	0.14	11.8	0.2	1.7	8.2	0.1	2.2	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
DnaB_C	PF03796.15	gi|410671369|ref|YP_006923740.1|	-	0.15	11.4	0.0	0.3	10.4	0.0	1.5	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
PhoH	PF02562.16	gi|410671369|ref|YP_006923740.1|	-	0.16	11.4	0.3	0.34	10.3	0.3	1.5	1	0	0	1	1	1	0	PhoH-like	protein
TrmB	PF01978.19	gi|410671370|ref|YP_006923741.1|	-	6.2e-06	26.0	0.2	6.6e-05	22.7	0.0	2.0	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|410671370|ref|YP_006923741.1|	-	0.054	13.4	0.0	0.14	12.0	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Radical_SAM_C	PF16199.5	gi|410671371|ref|YP_006923742.1|	-	9.4e-25	86.5	0.0	1.8e-24	85.6	0.0	1.5	1	0	0	1	1	1	1	Radical_SAM	C-terminal	domain
Radical_SAM	PF04055.21	gi|410671371|ref|YP_006923742.1|	-	8.4e-22	78.3	0.0	1.9e-21	77.2	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
Acetyltransf_1	PF00583.25	gi|410671371|ref|YP_006923742.1|	-	8.9e-05	22.7	0.2	0.00022	21.4	0.2	1.7	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|410671371|ref|YP_006923742.1|	-	0.012	15.5	0.0	0.027	14.4	0.0	1.5	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|410671371|ref|YP_006923742.1|	-	0.025	15.0	0.1	0.058	13.8	0.1	1.6	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DNA_pol3_delta2	PF13177.6	gi|410671372|ref|YP_006923743.1|	-	7.1e-13	48.7	0.0	1e-12	48.1	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
Rep_fac_C	PF08542.11	gi|410671372|ref|YP_006923743.1|	-	6.7e-12	45.6	0.8	1.5e-11	44.6	0.8	1.6	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
AAA	PF00004.29	gi|410671372|ref|YP_006923743.1|	-	1.1e-09	38.8	0.0	5.4e-09	36.6	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TIP49	PF06068.13	gi|410671372|ref|YP_006923743.1|	-	4.4e-05	22.8	0.0	0.016	14.4	0.0	2.8	2	1	1	3	3	3	2	TIP49	P-loop	domain
AAA_16	PF13191.6	gi|410671372|ref|YP_006923743.1|	-	0.0013	19.1	0.0	0.0098	16.3	0.0	2.3	2	1	0	2	2	2	1	AAA	ATPase	domain
Rad17	PF03215.15	gi|410671372|ref|YP_006923743.1|	-	0.0023	17.9	0.0	0.0035	17.3	0.0	1.2	1	0	0	1	1	1	1	Rad17	P-loop	domain
DNA_pol3_delta	PF06144.13	gi|410671372|ref|YP_006923743.1|	-	0.0055	16.5	0.0	0.0088	15.8	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
AAA_24	PF13479.6	gi|410671372|ref|YP_006923743.1|	-	0.025	14.3	0.1	0.06	13.1	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
RuvB_N	PF05496.12	gi|410671372|ref|YP_006923743.1|	-	0.058	13.1	0.2	0.98	9.1	0.0	2.7	3	1	1	4	4	4	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_14	PF13173.6	gi|410671372|ref|YP_006923743.1|	-	0.067	13.2	0.0	0.43	10.6	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
SecD_SecF	PF02355.16	gi|410671373|ref|YP_006923744.1|	-	2.2e-17	63.1	5.6	4e-17	62.2	5.6	1.3	1	0	0	1	1	1	1	Protein	export	membrane	protein
MMPL	PF03176.15	gi|410671373|ref|YP_006923744.1|	-	2.7e-07	29.8	10.5	2.7e-07	29.8	10.5	1.8	2	0	0	2	2	2	1	MMPL	family
Sec_GG	PF07549.14	gi|410671373|ref|YP_006923744.1|	-	9.2e-05	21.8	0.6	0.00024	20.5	0.6	1.8	1	0	0	1	1	1	1	SecD/SecF	GG	Motif
DUF3823_C	PF18003.1	gi|410671373|ref|YP_006923744.1|	-	0.052	14.3	0.9	0.12	13.1	0.9	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3823_C)
DUF2550	PF10739.9	gi|410671373|ref|YP_006923744.1|	-	0.18	11.8	0.0	0.58	10.2	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2550)
Patched	PF02460.18	gi|410671373|ref|YP_006923744.1|	-	0.92	7.5	6.8	1.4	6.9	6.8	1.1	1	0	0	1	1	1	0	Patched	family
Podoplanin	PF05808.11	gi|410671373|ref|YP_006923744.1|	-	6.9	6.8	8.5	2.5	8.2	1.1	2.5	2	0	0	2	2	2	0	Podoplanin
SecD_SecF	PF02355.16	gi|410671374|ref|YP_006923745.1|	-	4.6e-35	120.7	17.8	4.6e-35	120.7	17.8	1.4	2	0	0	2	2	2	1	Protein	export	membrane	protein
Sec_GG	PF07549.14	gi|410671374|ref|YP_006923745.1|	-	0.00037	19.9	0.2	0.0022	17.4	0.0	2.2	2	0	0	2	2	2	1	SecD/SecF	GG	Motif
Patched	PF02460.18	gi|410671374|ref|YP_006923745.1|	-	0.14	10.2	18.2	0.2	9.7	18.2	1.1	1	0	0	1	1	1	0	Patched	family
dCMP_cyt_deam_1	PF00383.23	gi|410671375|ref|YP_006923746.1|	-	3.8e-28	97.3	3.4	7.4e-28	96.4	3.4	1.4	1	1	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
MafB19-deam	PF14437.6	gi|410671375|ref|YP_006923746.1|	-	2.4e-19	69.4	0.9	3.3e-19	69.0	0.9	1.2	1	0	0	1	1	1	1	MafB19-like	deaminase
APOBEC_N	PF08210.11	gi|410671375|ref|YP_006923746.1|	-	0.0013	18.6	1.6	0.0021	18.0	1.6	1.6	1	1	0	1	1	1	1	APOBEC-like	N-terminal	domain
Bd3614-deam	PF14439.6	gi|410671375|ref|YP_006923746.1|	-	0.0033	17.5	1.3	0.0071	16.4	0.5	1.8	1	1	1	2	2	2	1	Bd3614-like	deaminase
SNAD4	PF18750.1	gi|410671375|ref|YP_006923746.1|	-	0.0075	16.4	0.2	0.011	15.9	0.2	1.4	1	0	0	1	1	1	1	Secreted	Novel	AID/APOBEC-like	Deaminase	4
OTT_1508_deam	PF14441.6	gi|410671375|ref|YP_006923746.1|	-	0.016	15.2	0.2	0.026	14.5	0.2	1.3	1	0	0	1	1	1	0	OTT_1508-like	deaminase
APOBEC2	PF18772.1	gi|410671375|ref|YP_006923746.1|	-	0.017	15.1	0.1	0.021	14.9	0.1	1.3	1	0	0	1	1	1	0	APOBEC2
NAD1	PF18778.1	gi|410671375|ref|YP_006923746.1|	-	0.03	14.4	0.5	0.041	14.0	0.5	1.2	1	0	0	1	1	1	0	Novel	AID	APOBEC	clade	1
APOBEC3	PF18771.1	gi|410671375|ref|YP_006923746.1|	-	0.033	14.3	0.5	0.043	13.9	0.5	1.2	1	0	0	1	1	1	0	APOBEC3
XOO_2897-deam	PF14440.6	gi|410671375|ref|YP_006923746.1|	-	0.041	14.0	0.1	0.061	13.4	0.1	1.3	1	0	0	1	1	1	0	Xanthomonas	XOO_2897-like	deaminase
zf-C3HC4	PF00097.25	gi|410671375|ref|YP_006923746.1|	-	2.5	8.0	8.1	0.21	11.5	2.5	2.1	2	1	1	3	3	3	0	Zinc	finger,	C3HC4	type	(RING	finger)
F420_ligase	PF01996.16	gi|410671376|ref|YP_006923747.1|	-	3.3e-61	206.7	0.7	4.4e-61	206.3	0.7	1.0	1	0	0	1	1	1	1	F420-0:Gamma-glutamyl	ligase
HSP20	PF00011.21	gi|410671377|ref|YP_006923748.1|	-	3.7e-22	78.4	1.0	4.5e-22	78.1	1.0	1.1	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|410671377|ref|YP_006923748.1|	-	4.3e-12	45.4	0.0	6.7e-12	44.8	0.0	1.3	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
CS	PF04969.16	gi|410671377|ref|YP_006923748.1|	-	6.2e-06	27.1	0.1	8.4e-06	26.7	0.1	1.2	1	0	0	1	1	1	1	CS	domain
DUF5611	PF18446.1	gi|410671377|ref|YP_006923748.1|	-	0.029	15.2	0.6	0.084	13.7	0.4	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF5611)
FKBP26_C	PF18046.1	gi|410671377|ref|YP_006923748.1|	-	0.067	13.3	1.0	8	6.6	0.4	2.3	2	0	0	2	2	2	0	FKBP26_C-terminal
PhosphMutase	PF10143.9	gi|410671378|ref|YP_006923749.1|	-	9.5e-60	201.3	0.0	1.5e-59	200.7	0.0	1.3	1	0	0	1	1	1	1	2,3-bisphosphoglycerate-independent	phosphoglycerate	mutase
Metalloenzyme	PF01676.18	gi|410671378|ref|YP_006923749.1|	-	8.3e-40	136.7	0.0	9.9e-40	136.5	0.0	1.0	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Phosphodiest	PF01663.22	gi|410671378|ref|YP_006923749.1|	-	0.056	13.0	0.1	0.15	11.6	0.1	1.7	2	0	0	2	2	2	0	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
AA_kinase	PF00696.28	gi|410671379|ref|YP_006923750.1|	-	3.3e-48	164.4	1.0	4.9e-48	163.8	0.1	1.7	2	0	0	2	2	2	1	Amino	acid	kinase	family
ACT_7	PF13840.6	gi|410671379|ref|YP_006923750.1|	-	3.2e-25	87.7	3.5	1.3e-12	47.4	0.1	2.7	2	0	0	2	2	2	2	ACT	domain
ACT	PF01842.25	gi|410671379|ref|YP_006923750.1|	-	9.8e-23	79.6	1.8	2.8e-11	43.0	0.2	2.7	2	0	0	2	2	2	2	ACT	domain
LytR_C	PF13399.6	gi|410671379|ref|YP_006923750.1|	-	0.0031	18.5	0.1	3.1	8.9	0.1	2.8	1	1	1	2	2	2	2	LytR	cell	envelope-related	transcriptional	attenuator
Hydrolase_6	PF13344.6	gi|410671379|ref|YP_006923750.1|	-	0.022	14.9	0.1	8.2	6.6	0.0	3.6	4	0	0	4	4	4	0	Haloacid	dehalogenase-like	hydrolase
ACT_6	PF13740.6	gi|410671379|ref|YP_006923750.1|	-	0.031	14.3	0.4	0.35	10.9	0.1	2.5	2	0	0	2	2	2	0	ACT	domain
AIRS_C	PF02769.22	gi|410671380|ref|YP_006923751.1|	-	1.5e-17	64.2	0.0	6.8e-17	62.0	0.0	2.0	2	0	0	2	2	2	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|410671380|ref|YP_006923751.1|	-	7.7e-14	52.1	0.2	1.5e-13	51.2	0.2	1.5	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
RRM_1	PF00076.22	gi|410671380|ref|YP_006923751.1|	-	0.032	14.0	0.0	0.058	13.2	0.0	1.4	1	0	0	1	1	1	0	RNA	recognition	motif.	(a.k.a.	RRM,	RBD,	or	RNP	domain)
DUF1894	PF08979.11	gi|410671381|ref|YP_006923752.1|	-	1.2e-30	105.7	0.0	1.3e-30	105.6	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1894)
BPL_N	PF09825.9	gi|410671382|ref|YP_006923753.1|	-	5.9e-05	22.3	0.0	0.0016	17.6	0.0	2.0	2	0	0	2	2	2	2	Biotin-protein	ligase,	N	terminal
UvrA_inter	PF17760.1	gi|410671382|ref|YP_006923753.1|	-	0.14	12.3	0.1	0.58	10.3	0.1	2.0	1	1	1	2	2	2	0	UvrA	interaction	domain
MtrH	PF02007.18	gi|410671383|ref|YP_006923754.1|	-	7.7e-141	468.5	3.1	8.7e-141	468.3	3.1	1.0	1	0	0	1	1	1	1	Tetrahydromethanopterin	S-methyltransferase	MtrH	subunit
TetR_N	PF00440.23	gi|410671383|ref|YP_006923754.1|	-	0.46	10.3	2.6	5.7	6.8	0.0	2.9	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	tetR	family
MtrG	PF04210.13	gi|410671384|ref|YP_006923755.1|	-	4.9e-34	116.0	0.6	5.8e-34	115.7	0.6	1.1	1	0	0	1	1	1	1	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
MtrF	PF09472.10	gi|410671385|ref|YP_006923756.1|	-	1.1e-29	101.6	1.1	1.2e-29	101.5	1.1	1.0	1	0	0	1	1	1	1	Tetrahydromethanopterin	S-methyltransferase,	F	subunit	(MtrF)
YqfD	PF06898.11	gi|410671385|ref|YP_006923756.1|	-	0.23	10.2	0.5	0.21	10.4	0.5	1.1	1	0	0	1	1	1	0	Putative	stage	IV	sporulation	protein	YqfD
MtrA	PF04208.14	gi|410671386|ref|YP_006923757.1|	-	5e-85	283.5	2.4	7.1e-85	283.0	2.4	1.2	1	0	0	1	1	1	1	Tetrahydromethanopterin	S-methyltransferase,	subunit	A
MtrF	PF09472.10	gi|410671386|ref|YP_006923757.1|	-	0.0018	17.6	0.3	0.0074	15.7	0.3	2.1	1	0	0	1	1	1	1	Tetrahydromethanopterin	S-methyltransferase,	F	subunit	(MtrF)
MtrB	PF05440.12	gi|410671387|ref|YP_006923758.1|	-	3e-38	130.1	0.1	3.5e-38	129.9	0.1	1.0	1	0	0	1	1	1	1	Tetrahydromethanopterin	S-methyltransferase	subunit	B
PRF	PF06875.11	gi|410671387|ref|YP_006923758.1|	-	0.066	12.6	0.1	0.083	12.3	0.1	1.1	1	0	0	1	1	1	0	Plethodontid	receptivity	factor	PRF
MtrC	PF04211.13	gi|410671388|ref|YP_006923759.1|	-	1.3e-107	358.8	34.5	1.6e-107	358.5	34.5	1.0	1	0	0	1	1	1	1	Tetrahydromethanopterin	S-methyltransferase,	subunit	C
MtrD	PF04207.12	gi|410671389|ref|YP_006923760.1|	-	1.7e-102	341.7	21.6	2e-102	341.5	21.6	1.1	1	0	0	1	1	1	1	Tetrahydromethanopterin	S-methyltransferase,	subunit	D
SurE	PF01975.17	gi|410671389|ref|YP_006923760.1|	-	0.065	13.0	4.9	0.11	12.3	0.1	2.2	1	1	1	2	2	2	0	Survival	protein	SurE
MtrE	PF04206.12	gi|410671390|ref|YP_006923761.1|	-	7.2e-138	458.4	13.5	8.2e-138	458.2	13.5	1.0	1	0	0	1	1	1	1	Tetrahydromethanopterin	S-methyltransferase,	subunit	E
DUF5402	PF17393.2	gi|410671391|ref|YP_006923762.1|	-	1.5e-53	179.8	0.0	1.7e-53	179.6	0.0	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5402)
Peptidase_U32	PF01136.19	gi|410671392|ref|YP_006923763.1|	-	6.4e-09	35.3	0.0	1.3e-07	31.0	0.0	2.3	3	0	0	3	3	3	1	Peptidase	family	U32
Glyco_hydro_97	PF10566.9	gi|410671392|ref|YP_006923763.1|	-	0.1	11.9	0.0	0.32	10.2	0.0	1.7	2	0	0	2	2	2	0	Glycoside	hydrolase	97
AP_endonuc_2	PF01261.24	gi|410671393|ref|YP_006923764.1|	-	1.9e-26	92.8	0.0	2.3e-26	92.6	0.0	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Usp	PF00582.26	gi|410671394|ref|YP_006923765.1|	-	2.3e-25	89.7	0.3	2.9e-25	89.4	0.3	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
Cdh1_DBD_1	PF18196.1	gi|410671394|ref|YP_006923765.1|	-	0.086	13.2	0.1	0.16	12.3	0.0	1.5	2	0	0	2	2	2	0	Chromodomain	helicase	DNA-binding	domain	1
zf_C2H2_13	PF18508.1	gi|410671396|ref|YP_006923767.1|	-	0.06	12.9	0.1	0.092	12.4	0.1	1.3	1	0	0	1	1	1	0	Zinc	finger	domain
SRP19	PF01922.17	gi|410671397|ref|YP_006923768.1|	-	3.2e-10	40.8	0.0	3.9e-10	40.5	0.0	1.1	1	0	0	1	1	1	1	SRP19	protein
Sec61_beta	PF03911.16	gi|410671398|ref|YP_006923769.1|	-	2.3e-15	56.3	0.5	3.5e-15	55.7	0.5	1.3	1	0	0	1	1	1	1	Sec61beta	family
IF-2B	PF01008.17	gi|410671399|ref|YP_006923770.1|	-	4.4e-84	282.0	0.1	5.2e-84	281.8	0.1	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
MFS_1	PF07690.16	gi|410671400|ref|YP_006923771.1|	-	2.3e-37	128.7	53.2	3.2e-37	128.3	46.4	2.5	2	1	0	2	2	2	1	Major	Facilitator	Superfamily
MFS_3	PF05977.13	gi|410671400|ref|YP_006923771.1|	-	2.4e-08	32.9	8.4	2.4e-08	32.9	8.4	2.2	2	1	0	2	2	2	1	Transmembrane	secretion	effector
DUF2177	PF09945.9	gi|410671400|ref|YP_006923771.1|	-	0.083	13.0	0.5	0.083	13.0	0.5	2.3	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2177)
AI-2E_transport	PF01594.16	gi|410671401|ref|YP_006923772.1|	-	4.3e-43	147.7	42.1	5.2e-43	147.4	42.1	1.0	1	0	0	1	1	1	1	AI-2E	family	transporter
Trep_Strep	PF09605.10	gi|410671401|ref|YP_006923772.1|	-	0.018	15.0	10.2	0.018	15.0	10.2	3.5	2	1	0	2	2	2	0	Hypothetical	bacterial	integral	membrane	protein	(Trep_Strep)
DUF3043	PF11241.8	gi|410671401|ref|YP_006923772.1|	-	0.13	12.3	0.1	0.13	12.3	0.1	3.0	2	2	0	3	3	3	0	Protein	of	unknown	function	(DUF3043)
DUF308	PF03729.13	gi|410671402|ref|YP_006923773.1|	-	1.1e-11	44.8	46.1	1.6e-08	34.7	13.2	3.1	2	1	1	3	3	3	3	Short	repeat	of	unknown	function	(DUF308)
DUF308	PF03729.13	gi|410671404|ref|YP_006923775.1|	-	8.2e-16	58.1	57.3	1.4e-11	44.5	21.7	3.0	3	0	0	3	3	3	3	Short	repeat	of	unknown	function	(DUF308)
DUF1269	PF06897.12	gi|410671405|ref|YP_006923776.1|	-	3.3e-37	126.8	0.9	4.7e-37	126.3	0.9	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1269)
DUF3482	PF11981.8	gi|410671405|ref|YP_006923776.1|	-	0.016	14.6	0.7	0.017	14.5	0.7	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3482)
Gly-zipper_Omp	PF13488.6	gi|410671405|ref|YP_006923776.1|	-	0.022	14.7	5.6	0.037	14.0	5.6	1.3	1	0	0	1	1	1	0	Glycine	zipper
Gly-zipper_YMGG	PF13441.6	gi|410671405|ref|YP_006923776.1|	-	0.037	13.8	8.1	0.13	12.0	8.1	1.8	1	1	0	1	1	1	0	YMGG-like	Gly-zipper
Bacteriocin_IIc	PF10439.9	gi|410671405|ref|YP_006923776.1|	-	0.097	12.8	6.1	0.17	12.0	6.1	1.3	1	0	0	1	1	1	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
Gly-zipper_OmpA	PF13436.6	gi|410671405|ref|YP_006923776.1|	-	0.65	9.8	12.6	2.3	8.0	1.1	2.1	1	1	0	1	1	1	0	Glycine-zipper	domain
Rick_17kDa_Anti	PF05433.15	gi|410671405|ref|YP_006923776.1|	-	4.4	7.2	8.7	0.68	9.8	1.9	2.1	2	0	0	2	2	2	0	Glycine	zipper	2TM	domain
LOR	PF04525.12	gi|410671406|ref|YP_006923777.1|	-	2.3e-15	56.7	1.5	3.9e-15	55.9	1.5	1.3	1	1	0	1	1	1	1	LURP-one-related
HD	PF01966.22	gi|410671407|ref|YP_006923778.1|	-	1.1e-11	45.0	0.1	2.4e-11	43.9	0.1	1.6	1	0	0	1	1	1	1	HD	domain
HDOD	PF08668.12	gi|410671407|ref|YP_006923778.1|	-	0.065	12.7	0.0	0.14	11.6	0.0	1.5	1	0	0	1	1	1	0	HDOD	domain
GCD14	PF08704.10	gi|410671408|ref|YP_006923779.1|	-	3.6e-12	46.5	0.0	2.2e-10	40.6	0.0	2.1	1	1	1	2	2	2	1	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_31	PF13847.6	gi|410671408|ref|YP_006923779.1|	-	7.1e-11	42.1	0.0	1e-10	41.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|410671408|ref|YP_006923779.1|	-	9.7e-11	42.2	0.0	1e-09	38.9	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410671408|ref|YP_006923779.1|	-	1.5e-08	35.2	0.0	4e-08	33.8	0.0	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.20	gi|410671408|ref|YP_006923779.1|	-	2.4e-07	30.1	0.0	3.1e-07	29.7	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
PrmA	PF06325.13	gi|410671408|ref|YP_006923779.1|	-	1.2e-06	28.1	0.0	1.9e-06	27.5	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
PCMT	PF01135.19	gi|410671408|ref|YP_006923779.1|	-	3.3e-06	27.0	0.0	4.5e-06	26.6	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Ubie_methyltran	PF01209.18	gi|410671408|ref|YP_006923779.1|	-	7.8e-06	25.4	0.0	1.1e-05	24.9	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_18	PF12847.7	gi|410671408|ref|YP_006923779.1|	-	2.1e-05	24.5	0.1	4.7e-05	23.4	0.1	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.6	gi|410671408|ref|YP_006923779.1|	-	4.1e-05	24.6	0.0	8.5e-05	23.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|410671408|ref|YP_006923779.1|	-	5e-05	24.0	0.1	0.00037	21.2	0.0	2.4	1	1	1	2	2	2	1	Methyltransferase	domain
MTS	PF05175.14	gi|410671408|ref|YP_006923779.1|	-	0.00017	21.2	0.0	0.00035	20.2	0.1	1.4	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_23	PF13489.6	gi|410671408|ref|YP_006923779.1|	-	0.0011	18.8	0.0	0.0024	17.7	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.17	gi|410671408|ref|YP_006923779.1|	-	0.019	14.4	0.0	1.2	8.6	0.0	2.1	2	0	0	2	2	2	0	Putative	methyltransferase
N6_N4_Mtase	PF01555.18	gi|410671408|ref|YP_006923779.1|	-	0.051	13.3	0.0	0.17	11.5	0.0	1.7	2	0	0	2	2	2	0	DNA	methylase
MetW	PF07021.12	gi|410671408|ref|YP_006923779.1|	-	0.082	12.5	0.1	0.12	11.9	0.1	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
tRNA_U5-meth_tr	PF05958.11	gi|410671408|ref|YP_006923779.1|	-	0.21	10.5	0.0	0.29	10.1	0.0	1.1	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
Rad51	PF08423.11	gi|410671409|ref|YP_006923780.1|	-	7e-28	97.6	0.1	8.2e-28	97.4	0.1	1.1	1	0	0	1	1	1	1	Rad51
ATPase	PF06745.13	gi|410671409|ref|YP_006923780.1|	-	1.9e-10	40.5	0.7	5.2e-10	39.1	0.7	1.7	1	1	0	1	1	1	1	KaiC
RecA	PF00154.21	gi|410671409|ref|YP_006923780.1|	-	3.6e-08	33.2	0.1	4.1e-08	33.0	0.1	1.1	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
AAA_24	PF13479.6	gi|410671409|ref|YP_006923780.1|	-	1.8e-07	31.1	0.0	2.6e-07	30.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|410671409|ref|YP_006923780.1|	-	1.9e-06	27.6	0.0	3e-06	27.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|410671409|ref|YP_006923780.1|	-	3.5e-05	23.6	0.1	0.00026	20.8	0.1	2.0	1	1	0	1	1	1	1	IstB-like	ATP	binding	protein
Zot	PF05707.12	gi|410671409|ref|YP_006923780.1|	-	5.8e-05	22.8	0.1	0.00027	20.7	0.1	1.7	1	1	0	1	1	1	1	Zonular	occludens	toxin	(Zot)
SRP54	PF00448.22	gi|410671409|ref|YP_006923780.1|	-	0.00014	21.6	0.0	0.00019	21.2	0.0	1.2	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
ATPase_2	PF01637.18	gi|410671409|ref|YP_006923780.1|	-	0.00031	20.8	0.1	0.00039	20.4	0.1	1.2	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_31	PF13614.6	gi|410671409|ref|YP_006923780.1|	-	0.00069	19.6	0.0	0.001	19.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
PhoH	PF02562.16	gi|410671409|ref|YP_006923780.1|	-	0.0011	18.5	0.0	0.0023	17.4	0.0	1.6	1	0	0	1	1	1	1	PhoH-like	protein
CbiA	PF01656.23	gi|410671409|ref|YP_006923780.1|	-	0.0015	18.6	0.0	0.0021	18.1	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
CobU	PF02283.16	gi|410671409|ref|YP_006923780.1|	-	0.0016	18.0	0.0	0.0054	16.3	0.0	1.8	1	1	0	1	1	1	1	Cobinamide	kinase	/	cobinamide	phosphate	guanyltransferase
DUF2075	PF09848.9	gi|410671409|ref|YP_006923780.1|	-	0.0046	16.2	0.0	0.0052	16.1	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
CLP1_P	PF16575.5	gi|410671409|ref|YP_006923780.1|	-	0.0048	16.7	0.0	0.0078	16.0	0.0	1.3	1	0	0	1	1	1	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
KTI12	PF08433.10	gi|410671409|ref|YP_006923780.1|	-	0.012	15.1	0.0	0.023	14.1	0.0	1.4	1	1	0	1	1	1	0	Chromatin	associated	protein	KTI12
DUF87	PF01935.17	gi|410671409|ref|YP_006923780.1|	-	0.017	15.2	0.1	0.077	13.1	0.0	1.8	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AAA_22	PF13401.6	gi|410671409|ref|YP_006923780.1|	-	0.021	15.1	0.0	0.03	14.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
DUF815	PF05673.13	gi|410671409|ref|YP_006923780.1|	-	0.022	14.0	0.0	0.031	13.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
TrwB_AAD_bind	PF10412.9	gi|410671409|ref|YP_006923780.1|	-	0.032	13.2	0.0	0.043	12.7	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_18	PF13238.6	gi|410671409|ref|YP_006923780.1|	-	0.035	14.6	0.0	0.051	14.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
MipZ	PF09140.11	gi|410671409|ref|YP_006923780.1|	-	0.036	13.4	0.0	0.056	12.7	0.0	1.3	1	0	0	1	1	1	0	ATPase	MipZ
ATP_bind_1	PF03029.17	gi|410671409|ref|YP_006923780.1|	-	0.051	13.4	0.1	0.095	12.5	0.1	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_30	PF13604.6	gi|410671409|ref|YP_006923780.1|	-	0.058	13.1	0.0	0.076	12.7	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
APS_kinase	PF01583.20	gi|410671409|ref|YP_006923780.1|	-	0.07	13.0	0.1	0.48	10.3	0.1	2.1	1	1	0	1	1	1	0	Adenylylsulphate	kinase
AAA	PF00004.29	gi|410671409|ref|YP_006923780.1|	-	0.092	13.2	0.1	0.15	12.5	0.1	1.4	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_14	PF13173.6	gi|410671409|ref|YP_006923780.1|	-	0.097	12.7	0.1	0.19	11.8	0.1	1.4	1	1	0	1	1	1	0	AAA	domain
DEAD	PF00270.29	gi|410671409|ref|YP_006923780.1|	-	0.1	12.3	0.0	0.17	11.7	0.0	1.4	1	0	0	1	1	1	0	DEAD/DEAH	box	helicase
NACHT	PF05729.12	gi|410671409|ref|YP_006923780.1|	-	0.13	12.1	0.1	0.23	11.3	0.0	1.4	1	1	0	1	1	1	0	NACHT	domain
ArsA_ATPase	PF02374.15	gi|410671409|ref|YP_006923780.1|	-	0.15	11.2	0.1	0.27	10.4	0.1	1.5	1	1	0	1	1	1	0	Anion-transporting	ATPase
RNA_helicase	PF00910.22	gi|410671409|ref|YP_006923780.1|	-	0.17	12.3	0.0	0.3	11.5	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
Glutaredoxin	PF00462.24	gi|410671410|ref|YP_006923781.1|	-	6.5e-10	39.1	0.1	8.3e-10	38.7	0.1	1.1	1	0	0	1	1	1	1	Glutaredoxin
DUF836	PF05768.14	gi|410671410|ref|YP_006923781.1|	-	0.00015	22.1	0.0	0.00016	22.1	0.0	1.1	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
GST_N_3	PF13417.6	gi|410671410|ref|YP_006923781.1|	-	0.003	17.9	0.0	0.004	17.5	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Thioredoxin_3	PF13192.6	gi|410671410|ref|YP_006923781.1|	-	0.02	15.0	0.2	0.034	14.2	0.2	1.4	1	1	0	1	1	1	0	Thioredoxin	domain
MAF_flag10	PF01973.18	gi|410671410|ref|YP_006923781.1|	-	0.025	14.3	0.0	0.025	14.3	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF115
Thioredoxin_2	PF13098.6	gi|410671410|ref|YP_006923781.1|	-	0.032	14.7	0.0	0.034	14.6	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin-like	domain
GST_N	PF02798.20	gi|410671410|ref|YP_006923781.1|	-	0.045	14.1	0.0	0.059	13.7	0.0	1.2	1	0	0	1	1	1	0	Glutathione	S-transferase,	N-terminal	domain
NRDD	PF13597.6	gi|410671411|ref|YP_006923782.1|	-	6.7e-156	520.4	0.0	8e-156	520.1	0.0	1.1	1	0	0	1	1	1	1	Anaerobic	ribonucleoside-triphosphate	reductase
AvrPtoB_bdg	PF16847.5	gi|410671411|ref|YP_006923782.1|	-	0.1	13.1	0.1	0.35	11.4	0.0	1.9	2	0	0	2	2	2	0	Avirulence	AvrPtoB,	BAK1-binding	domain
Radical_SAM	PF04055.21	gi|410671412|ref|YP_006923783.1|	-	3.5e-07	30.7	0.0	4.5e-07	30.4	0.0	1.2	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|410671412|ref|YP_006923783.1|	-	0.00089	19.5	0.0	0.0013	19.0	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|410671412|ref|YP_006923783.1|	-	0.0019	18.3	0.0	0.0047	17.1	0.0	1.6	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
DUF4349	PF14257.6	gi|410671413|ref|YP_006923784.1|	-	1.3e-62	211.0	0.5	1.7e-62	210.7	0.5	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4349)
PI3K_P85_iSH2	PF16454.5	gi|410671413|ref|YP_006923784.1|	-	0.058	13.0	0.2	0.085	12.4	0.2	1.2	1	0	0	1	1	1	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
MYO10_CC	PF16735.5	gi|410671413|ref|YP_006923784.1|	-	0.081	13.0	0.6	0.081	13.0	0.6	1.7	2	0	0	2	2	2	0	Unconventional	myosin-X	coiled	coil	domain
Corona_S2	PF01601.16	gi|410671413|ref|YP_006923784.1|	-	0.085	11.3	0.1	0.11	10.9	0.1	1.1	1	0	0	1	1	1	0	Coronavirus	S2	glycoprotein
CheY-binding	PF09078.11	gi|410671413|ref|YP_006923784.1|	-	0.2	11.8	0.7	1.4	9.1	0.0	2.3	2	0	0	2	2	2	0	CheY	binding
AIRS	PF00586.24	gi|410671414|ref|YP_006923785.1|	-	1.4e-23	83.3	0.7	3.4e-23	82.1	0.7	1.6	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.22	gi|410671414|ref|YP_006923785.1|	-	0.00021	21.4	0.0	0.00044	20.4	0.0	1.5	1	1	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
S-layer	PF07752.11	gi|410671415|ref|YP_006923786.1|	-	2.9e-197	652.5	25.7	2.2e-99	331.7	4.6	3.2	3	0	0	3	3	3	2	S-layer	protein
CARDB	PF07705.11	gi|410671415|ref|YP_006923786.1|	-	3.1e-06	27.4	0.9	3.1e-06	27.4	0.9	5.6	5	1	0	5	5	5	1	CARDB
tRNA-synt_1c_C	PF03950.18	gi|410671415|ref|YP_006923786.1|	-	2.7e-05	24.1	0.4	0.32	10.9	0.0	3.2	2	1	1	3	3	3	2	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
PEGA	PF08308.11	gi|410671415|ref|YP_006923786.1|	-	0.0029	17.5	3.0	0.011	15.6	0.1	3.5	2	1	1	3	3	3	1	PEGA	domain
DUF756	PF05506.12	gi|410671415|ref|YP_006923786.1|	-	0.007	17.3	9.8	3.6	8.6	0.0	5.0	4	1	0	4	4	4	2	Domain	of	unknown	function	(DUF756)
YtkA	PF13115.6	gi|410671415|ref|YP_006923786.1|	-	0.051	14.2	11.6	6	7.6	0.1	6.4	6	1	0	6	6	6	0	YtkA-like
PapC_N	PF13954.6	gi|410671415|ref|YP_006923786.1|	-	0.098	12.7	0.0	0.25	11.4	0.0	1.6	1	0	0	1	1	1	0	PapC	N-terminal	domain
PDZ_2	PF13180.6	gi|410671415|ref|YP_006923786.1|	-	0.12	12.7	1.4	5.7	7.3	0.0	3.7	3	0	0	3	3	3	0	PDZ	domain
CarbopepD_reg_2	PF13715.6	gi|410671415|ref|YP_006923786.1|	-	0.18	11.9	6.8	1.3	9.1	0.1	3.7	3	0	0	3	3	3	0	CarboxypepD_reg-like	domain
DUF4198	PF10670.9	gi|410671415|ref|YP_006923786.1|	-	0.42	10.9	9.2	5.2	7.4	0.1	4.5	5	1	0	5	5	5	0	Domain	of	unknown	function	(DUF4198)
Myosin_N	PF02736.19	gi|410671415|ref|YP_006923786.1|	-	0.74	9.7	10.7	1.5	8.7	0.8	4.0	3	0	0	3	3	3	0	Myosin	N-terminal	SH3-like	domain
Cupredoxin_1	PF13473.6	gi|410671415|ref|YP_006923786.1|	-	2	8.6	6.4	6.8	6.9	0.1	4.4	4	1	0	4	4	4	0	Cupredoxin-like	domain
DUF1214	PF06742.11	gi|410671415|ref|YP_006923786.1|	-	8.4	6.9	6.7	2.9	8.4	0.3	3.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1214)
HTH_3	PF01381.22	gi|410671416|ref|YP_006923787.1|	-	6.9e-10	38.8	0.4	1.6e-09	37.6	0.1	1.8	2	0	0	2	2	2	1	Helix-turn-helix
HTH_19	PF12844.7	gi|410671416|ref|YP_006923787.1|	-	0.0011	18.9	0.2	0.0033	17.4	0.1	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|410671416|ref|YP_006923787.1|	-	0.007	16.7	0.0	0.014	15.8	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|410671416|ref|YP_006923787.1|	-	0.026	14.9	0.0	0.061	13.8	0.0	1.6	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
PrpR_N	PF06506.11	gi|410671416|ref|YP_006923787.1|	-	0.045	13.3	0.4	0.085	12.4	0.4	1.5	1	1	0	1	1	1	0	Propionate	catabolism	activator
HTH_20	PF12840.7	gi|410671416|ref|YP_006923787.1|	-	0.13	12.4	0.0	0.42	10.7	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_psq	PF05225.16	gi|410671416|ref|YP_006923787.1|	-	0.23	11.2	0.8	12	5.7	0.0	3.1	3	0	0	3	3	3	0	helix-turn-helix,	Psq	domain
NMT1_2	PF13379.6	gi|410671417|ref|YP_006923788.1|	-	1.1e-34	120.3	0.0	2e-34	119.4	0.0	1.4	1	1	0	1	1	1	1	NMT1-like	family
NMT1	PF09084.11	gi|410671417|ref|YP_006923788.1|	-	7.7e-14	52.1	0.0	1.2e-13	51.5	0.0	1.4	1	0	0	1	1	1	1	NMT1/THI5	like
Phosphonate-bd	PF12974.7	gi|410671417|ref|YP_006923788.1|	-	4e-07	29.9	0.1	7.7e-07	29.0	0.1	1.5	1	1	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
LysR_substrate	PF03466.20	gi|410671417|ref|YP_006923788.1|	-	0.00091	18.7	0.2	0.19	11.1	0.0	2.8	2	1	1	3	3	3	2	LysR	substrate	binding	domain
NMT1_3	PF16868.5	gi|410671417|ref|YP_006923788.1|	-	0.0046	16.4	0.0	0.0078	15.7	0.0	1.3	1	0	0	1	1	1	1	NMT1-like	family
SBP_bac_3	PF00497.20	gi|410671417|ref|YP_006923788.1|	-	0.054	12.9	0.0	0.13	11.7	0.0	1.8	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	3
DctP	PF03480.13	gi|410671417|ref|YP_006923788.1|	-	0.055	12.8	0.0	0.089	12.1	0.0	1.4	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein,	family	7
BPD_transp_1	PF00528.22	gi|410671418|ref|YP_006923789.1|	-	3.5e-21	75.8	9.0	3.5e-21	75.8	9.0	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF92	PF01940.16	gi|410671418|ref|YP_006923789.1|	-	1.9	7.8	5.7	0.24	10.8	0.2	2.2	3	0	0	3	3	3	0	Integral	membrane	protein	DUF92
ABC_tran	PF00005.27	gi|410671419|ref|YP_006923790.1|	-	1.1e-32	113.5	0.0	1.7e-32	112.8	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|410671419|ref|YP_006923790.1|	-	4.9e-09	36.4	0.0	0.00073	19.4	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA	PF00004.29	gi|410671419|ref|YP_006923790.1|	-	1.8e-06	28.4	0.1	0.022	15.2	0.0	2.4	2	1	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_15	PF13175.6	gi|410671419|ref|YP_006923790.1|	-	0.001	18.9	0.0	0.0045	16.8	0.0	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|410671419|ref|YP_006923790.1|	-	0.0012	19.2	0.1	0.029	14.6	0.0	2.4	3	0	0	3	3	3	1	AAA	domain
Rad17	PF03215.15	gi|410671419|ref|YP_006923790.1|	-	0.0014	18.6	0.0	0.003	17.5	0.0	1.5	1	0	0	1	1	1	1	Rad17	P-loop	domain
ATPase_2	PF01637.18	gi|410671419|ref|YP_006923790.1|	-	0.0025	17.8	0.0	0.017	15.0	0.0	2.1	2	1	1	3	3	3	1	ATPase	domain	predominantly	from	Archaea
AAA_16	PF13191.6	gi|410671419|ref|YP_006923790.1|	-	0.0026	18.2	0.0	0.0084	16.5	0.0	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|410671419|ref|YP_006923790.1|	-	0.003	17.0	0.0	1.1	8.6	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_33	PF13671.6	gi|410671419|ref|YP_006923790.1|	-	0.0035	17.5	0.1	0.025	14.8	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|410671419|ref|YP_006923790.1|	-	0.0037	17.5	0.0	0.025	14.8	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.6	gi|410671419|ref|YP_006923790.1|	-	0.0038	17.7	0.0	0.0099	16.4	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|410671419|ref|YP_006923790.1|	-	0.0046	16.9	0.0	0.012	15.6	0.0	1.7	2	0	0	2	2	2	1	RsgA	GTPase
PduV-EutP	PF10662.9	gi|410671419|ref|YP_006923790.1|	-	0.0055	16.5	0.0	0.041	13.6	0.0	2.1	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_29	PF13555.6	gi|410671419|ref|YP_006923790.1|	-	0.0094	15.7	0.0	0.019	14.7	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
NACHT	PF05729.12	gi|410671419|ref|YP_006923790.1|	-	0.024	14.6	0.0	0.14	12.1	0.0	2.1	2	1	0	2	2	2	0	NACHT	domain
AAA_18	PF13238.6	gi|410671419|ref|YP_006923790.1|	-	0.049	14.2	0.1	0.32	11.5	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_5	PF07728.14	gi|410671419|ref|YP_006923790.1|	-	0.049	13.6	0.0	0.17	11.9	0.0	1.9	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
NB-ARC	PF00931.22	gi|410671419|ref|YP_006923790.1|	-	0.077	12.2	0.1	0.27	10.4	0.0	1.9	2	0	0	2	2	2	0	NB-ARC	domain
ABC_ATPase	PF09818.9	gi|410671419|ref|YP_006923790.1|	-	0.092	11.5	0.1	1.7	7.4	0.0	2.6	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
PhoH	PF02562.16	gi|410671419|ref|YP_006923790.1|	-	0.094	12.1	0.0	0.22	10.9	0.0	1.6	2	0	0	2	2	2	0	PhoH-like	protein
IstB_IS21	PF01695.17	gi|410671419|ref|YP_006923790.1|	-	0.1	12.3	0.0	0.27	10.9	0.0	1.6	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.22	gi|410671419|ref|YP_006923790.1|	-	0.19	12.1	0.0	0.77	10.2	0.0	2.0	2	0	0	2	2	2	0	RNA	helicase
Bactofilin	PF04519.13	gi|410671420|ref|YP_006923791.1|	-	6.8e-07	29.5	0.8	1.4e-06	28.5	0.3	1.7	1	1	0	1	1	1	1	Polymer-forming	cytoskeletal
Hexapep	PF00132.24	gi|410671420|ref|YP_006923791.1|	-	0.33	10.8	6.6	0.59	9.9	2.1	3.4	4	1	0	4	4	4	0	Bacterial	transferase	hexapeptide	(six	repeats)
PAS_9	PF13426.7	gi|410671421|ref|YP_006923792.1|	-	1.1e-31	109.1	0.1	6.5e-12	45.6	0.0	4.2	4	0	0	4	4	4	3	PAS	domain
PAS	PF00989.25	gi|410671421|ref|YP_006923792.1|	-	1.5e-31	108.7	0.0	4.7e-12	45.9	0.0	4.0	4	0	0	4	4	4	3	PAS	fold
HATPase_c	PF02518.26	gi|410671421|ref|YP_006923792.1|	-	3e-30	105.0	0.1	7.7e-30	103.7	0.1	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|410671421|ref|YP_006923792.1|	-	1e-22	80.4	0.0	2.4e-08	34.2	0.0	3.4	3	0	0	3	3	3	3	PAS	fold
PAS_8	PF13188.7	gi|410671421|ref|YP_006923792.1|	-	2.4e-17	62.5	0.0	0.00051	20.0	0.0	3.6	3	0	0	3	3	3	3	PAS	domain
HisKA	PF00512.25	gi|410671421|ref|YP_006923792.1|	-	4.8e-13	48.9	0.1	1.3e-12	47.6	0.1	1.8	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_3	PF08447.12	gi|410671421|ref|YP_006923792.1|	-	1.5e-10	41.2	0.0	0.0003	21.0	0.0	3.5	3	0	0	3	3	3	2	PAS	fold
PAS_7	PF12860.7	gi|410671421|ref|YP_006923792.1|	-	7.3e-06	26.1	0.0	1.5	9.0	0.0	3.9	3	1	0	3	3	3	2	PAS	fold
PAS_10	PF13596.6	gi|410671421|ref|YP_006923792.1|	-	0.00011	22.7	0.0	0.0079	16.8	0.0	3.1	3	0	0	3	3	3	1	PAS	domain
HATPase_c_5	PF14501.6	gi|410671421|ref|YP_006923792.1|	-	0.00054	19.8	0.1	0.0013	18.6	0.1	1.7	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_3	PF13589.6	gi|410671421|ref|YP_006923792.1|	-	0.00075	19.3	0.0	0.0014	18.4	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_12	PF18095.1	gi|410671421|ref|YP_006923792.1|	-	0.0024	17.5	0.0	1.2	8.7	0.0	2.6	2	0	0	2	2	2	2	UPF0242	C-terminal	PAS-like	domain
HATPase_c_2	PF13581.6	gi|410671421|ref|YP_006923792.1|	-	0.0034	17.3	0.0	0.006	16.5	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_11	PF14598.6	gi|410671421|ref|YP_006923792.1|	-	0.047	13.8	0.0	0.12	12.5	0.0	1.7	1	0	0	1	1	1	0	PAS	domain
ParA	PF10609.9	gi|410671423|ref|YP_006923794.1|	-	6.1e-100	333.7	0.1	7.1e-100	333.5	0.1	1.0	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|410671423|ref|YP_006923794.1|	-	8.8e-16	58.1	0.0	3.2e-15	56.3	0.0	1.9	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|410671423|ref|YP_006923794.1|	-	9.5e-11	41.9	0.5	2.8e-09	37.1	0.5	2.2	1	1	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.15	gi|410671423|ref|YP_006923794.1|	-	2.4e-10	40.1	0.0	7.3e-10	38.5	0.0	1.6	1	1	0	2	2	2	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.18	gi|410671423|ref|YP_006923794.1|	-	2.6e-06	27.1	0.1	0.00035	20.1	0.1	2.2	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
MipZ	PF09140.11	gi|410671423|ref|YP_006923794.1|	-	5.3e-06	25.9	0.0	6.7e-06	25.6	0.0	1.2	1	0	0	1	1	1	1	ATPase	MipZ
AAA_26	PF13500.6	gi|410671423|ref|YP_006923794.1|	-	0.0001	22.2	0.5	0.15	11.8	0.2	2.2	2	0	0	2	2	2	2	AAA	domain
MeaB	PF03308.16	gi|410671423|ref|YP_006923794.1|	-	0.00013	21.0	0.1	0.00022	20.3	0.1	1.2	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
CLP1_P	PF16575.5	gi|410671423|ref|YP_006923794.1|	-	0.00026	20.9	0.0	0.00046	20.0	0.0	1.4	1	0	0	1	1	1	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
SRP54	PF00448.22	gi|410671423|ref|YP_006923794.1|	-	0.00033	20.3	0.2	0.00061	19.5	0.2	1.4	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_25	PF13481.6	gi|410671423|ref|YP_006923794.1|	-	0.0005	19.7	0.0	0.00084	19.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
CBP_BcsQ	PF06564.12	gi|410671423|ref|YP_006923794.1|	-	0.001	18.6	0.2	0.21	11.0	0.2	2.1	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
APS_kinase	PF01583.20	gi|410671423|ref|YP_006923794.1|	-	0.001	19.0	0.0	0.0017	18.2	0.0	1.3	1	0	0	1	1	1	1	Adenylylsulphate	kinase
VirC1	PF07015.11	gi|410671423|ref|YP_006923794.1|	-	0.0021	17.4	0.0	0.0041	16.5	0.0	1.4	1	0	0	1	1	1	1	VirC1	protein
RsgA_GTPase	PF03193.16	gi|410671423|ref|YP_006923794.1|	-	0.0032	17.4	0.1	0.0078	16.1	0.0	1.6	2	0	0	2	2	2	1	RsgA	GTPase
Zeta_toxin	PF06414.12	gi|410671423|ref|YP_006923794.1|	-	0.0038	16.5	0.0	0.006	15.9	0.0	1.3	1	0	0	1	1	1	1	Zeta	toxin
AAA_30	PF13604.6	gi|410671423|ref|YP_006923794.1|	-	0.0042	16.8	0.2	0.018	14.8	0.2	2.0	3	0	0	3	3	2	1	AAA	domain
NB-ARC	PF00931.22	gi|410671423|ref|YP_006923794.1|	-	0.011	14.9	0.0	0.018	14.3	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_16	PF13191.6	gi|410671423|ref|YP_006923794.1|	-	0.017	15.5	0.0	0.024	15.0	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
MobB	PF03205.14	gi|410671423|ref|YP_006923794.1|	-	0.022	14.7	0.0	0.041	13.8	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NTPase_1	PF03266.15	gi|410671423|ref|YP_006923794.1|	-	0.023	14.6	0.0	0.042	13.8	0.0	1.4	1	0	0	1	1	1	0	NTPase
AAA_33	PF13671.6	gi|410671423|ref|YP_006923794.1|	-	0.04	14.1	0.0	0.068	13.3	0.0	1.5	2	0	0	2	2	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|410671423|ref|YP_006923794.1|	-	0.04	14.3	0.1	0.19	12.1	0.0	2.0	2	0	0	2	2	2	0	RNA	helicase
IstB_IS21	PF01695.17	gi|410671423|ref|YP_006923794.1|	-	0.051	13.3	0.0	0.095	12.4	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
KTI12	PF08433.10	gi|410671423|ref|YP_006923794.1|	-	0.052	13.0	0.0	0.078	12.4	0.0	1.2	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_18	PF13238.6	gi|410671423|ref|YP_006923794.1|	-	0.076	13.6	0.0	0.15	12.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|410671423|ref|YP_006923794.1|	-	0.092	13.0	0.0	0.21	11.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|410671423|ref|YP_006923794.1|	-	0.094	12.4	0.0	0.14	11.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|410671423|ref|YP_006923794.1|	-	0.12	12.3	0.2	0.26	11.2	0.2	1.5	1	0	0	1	1	1	0	NACHT	domain
Hydrolase_4	PF12146.8	gi|410671423|ref|YP_006923794.1|	-	0.17	11.1	0.0	0.26	10.5	0.0	1.2	1	0	0	1	1	1	0	Serine	aminopeptidase,	S33
SEO_C	PF14577.6	gi|410671423|ref|YP_006923794.1|	-	0.19	11.1	0.0	0.33	10.4	0.0	1.3	1	0	0	1	1	1	0	Sieve	element	occlusion	C-terminus
DUF134	PF02001.16	gi|410671424|ref|YP_006923795.1|	-	2.1e-20	73.1	0.2	2.2e-20	73.0	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF134
Sigma70_ECF	PF07638.11	gi|410671424|ref|YP_006923795.1|	-	0.00024	21.0	0.7	0.00025	21.0	0.7	1.0	1	0	0	1	1	1	1	ECF	sigma	factor
Sigma70_r4_2	PF08281.12	gi|410671424|ref|YP_006923795.1|	-	0.0016	18.0	0.1	0.0021	17.7	0.1	1.2	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_10	PF04967.12	gi|410671424|ref|YP_006923795.1|	-	0.009	15.8	0.1	0.018	14.8	0.0	1.6	2	0	0	2	2	2	1	HTH	DNA	binding	domain
HTH_23	PF13384.6	gi|410671424|ref|YP_006923795.1|	-	0.095	12.5	0.1	0.12	12.2	0.1	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
BacA	PF02673.18	gi|410671425|ref|YP_006923796.1|	-	9.9e-51	172.9	16.6	1.2e-50	172.7	16.6	1.0	1	0	0	1	1	1	1	Bacitracin	resistance	protein	BacA
PspC	PF04024.12	gi|410671425|ref|YP_006923796.1|	-	0.11	12.3	3.3	3.7	7.4	0.0	3.3	3	1	0	3	3	3	0	PspC	domain
DUF1622	PF07784.11	gi|410671427|ref|YP_006923798.1|	-	3.5e-26	90.9	1.6	5.2e-26	90.4	1.6	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1622)
Fe_dep_repr_C	PF02742.15	gi|410671429|ref|YP_006923800.1|	-	6.6e-17	61.4	0.0	1.1e-16	60.6	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.19	gi|410671429|ref|YP_006923800.1|	-	7.5e-10	38.9	0.0	1.2e-09	38.2	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|410671429|ref|YP_006923800.1|	-	6.1e-05	22.8	0.0	0.00021	21.1	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.6	gi|410671429|ref|YP_006923800.1|	-	0.0015	19.0	0.0	0.0022	18.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
AbiEi_4	PF13338.6	gi|410671429|ref|YP_006923800.1|	-	0.0016	18.5	0.0	0.0028	17.8	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator,	AbiEi	antitoxin
MarR	PF01047.22	gi|410671429|ref|YP_006923800.1|	-	0.0042	17.0	0.0	0.0069	16.3	0.0	1.3	1	0	0	1	1	1	1	MarR	family
RuvB_C	PF05491.13	gi|410671429|ref|YP_006923800.1|	-	0.023	14.6	0.0	0.063	13.2	0.0	1.8	1	1	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
TrmB	PF01978.19	gi|410671429|ref|YP_006923800.1|	-	0.046	13.6	0.1	0.32	10.9	0.0	2.2	2	1	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
Rio2_N	PF09202.11	gi|410671429|ref|YP_006923800.1|	-	0.051	13.8	0.0	0.14	12.3	0.0	1.8	2	0	0	2	2	2	0	Rio2,	N-terminal
HTH_45	PF14947.6	gi|410671429|ref|YP_006923800.1|	-	0.086	12.8	0.0	0.51	10.4	0.0	2.0	1	1	1	2	2	2	0	Winged	helix-turn-helix
Rrf2	PF02082.20	gi|410671429|ref|YP_006923800.1|	-	0.12	12.8	0.0	0.2	12.0	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
ZnuA	PF01297.17	gi|410671430|ref|YP_006923801.1|	-	3e-61	207.1	1.9	3.6e-61	206.8	1.9	1.0	1	0	0	1	1	1	1	Zinc-uptake	complex	component	A	periplasmic
AIRC	PF00731.20	gi|410671430|ref|YP_006923801.1|	-	0.003	17.2	0.6	0.046	13.3	0.1	2.1	2	0	0	2	2	2	1	AIR	carboxylase
RED_N	PF07808.13	gi|410671430|ref|YP_006923801.1|	-	0.046	13.3	0.6	0.074	12.6	0.6	1.2	1	0	0	1	1	1	0	RED-like	protein	N-terminal	region
ABC_tran	PF00005.27	gi|410671431|ref|YP_006923802.1|	-	2e-28	99.6	0.0	2.9e-28	99.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|410671431|ref|YP_006923802.1|	-	1.7e-14	54.4	0.0	9.7e-07	28.9	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|410671431|ref|YP_006923802.1|	-	2.6e-07	30.3	0.0	6.5e-07	29.0	0.0	1.5	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|410671431|ref|YP_006923802.1|	-	0.00082	19.2	0.0	0.0038	17.0	0.0	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|410671431|ref|YP_006923802.1|	-	0.0018	17.9	0.0	0.0033	17.1	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|410671431|ref|YP_006923802.1|	-	0.0031	18.0	0.1	0.0093	16.5	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.17	gi|410671431|ref|YP_006923802.1|	-	0.0056	16.4	0.1	3.3	7.4	0.0	2.3	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
SbcCD_C	PF13558.6	gi|410671431|ref|YP_006923802.1|	-	0.0071	16.6	0.0	0.49	10.7	0.0	2.5	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_22	PF13401.6	gi|410671431|ref|YP_006923802.1|	-	0.0094	16.2	0.1	0.17	12.2	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|410671431|ref|YP_006923802.1|	-	0.0098	15.6	0.0	0.028	14.1	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_27	PF13514.6	gi|410671431|ref|YP_006923802.1|	-	0.029	14.0	0.0	0.05	13.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|410671431|ref|YP_006923802.1|	-	0.049	13.5	0.0	0.097	12.6	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|410671431|ref|YP_006923802.1|	-	0.059	13.5	0.0	0.12	12.4	0.0	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
T2SSE	PF00437.20	gi|410671431|ref|YP_006923802.1|	-	0.11	11.6	0.0	0.17	10.9	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_33	PF13671.6	gi|410671431|ref|YP_006923802.1|	-	0.11	12.7	0.0	1.1	9.4	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|410671431|ref|YP_006923802.1|	-	0.12	12.7	0.0	0.19	12.1	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
Dynamin_N	PF00350.23	gi|410671431|ref|YP_006923802.1|	-	0.13	12.3	0.1	20	5.2	0.0	2.1	2	0	0	2	2	2	0	Dynamin	family
TniB	PF05621.11	gi|410671431|ref|YP_006923802.1|	-	0.17	11.3	0.1	1.3	8.4	0.0	2.0	2	0	0	2	2	2	0	Bacterial	TniB	protein
AAA_10	PF12846.7	gi|410671431|ref|YP_006923802.1|	-	0.2	10.5	0.0	0.56	9.1	0.0	1.6	2	0	0	2	2	2	0	AAA-like	domain
NACHT	PF05729.12	gi|410671431|ref|YP_006923802.1|	-	0.22	11.4	0.4	0.82	9.6	0.1	1.9	2	0	0	2	2	2	0	NACHT	domain
ABC-3	PF00950.17	gi|410671432|ref|YP_006923803.1|	-	7.5e-84	281.2	28.8	8.5e-84	281.1	28.8	1.0	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.18	gi|410671432|ref|YP_006923803.1|	-	7.7e-13	48.1	23.3	7.7e-13	48.1	23.3	1.7	1	1	0	1	1	1	1	FecCD	transport	family
DUF4492	PF14899.6	gi|410671432|ref|YP_006923803.1|	-	0.082	12.8	1.5	0.23	11.4	1.5	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4492)
TfuA	PF07812.12	gi|410671433|ref|YP_006923804.1|	-	2.6e-47	159.4	0.5	6.1e-47	158.3	0.1	1.8	2	0	0	2	2	2	1	TfuA-like	protein
YcaO	PF02624.16	gi|410671434|ref|YP_006923805.1|	-	1.9e-80	270.5	0.3	2.8e-80	270.0	0.3	1.2	1	0	0	1	1	1	1	YcaO	cyclodehydratase,	ATP-ad	Mg2+-binding
Aminotran_5	PF00266.19	gi|410671437|ref|YP_006923808.1|	-	9.5e-118	393.4	0.0	1.1e-117	393.2	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|410671437|ref|YP_006923808.1|	-	1.4e-05	24.6	0.1	2.4e-05	23.8	0.1	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.20	gi|410671437|ref|YP_006923808.1|	-	0.0011	17.6	0.0	0.0015	17.1	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
AAA_16	PF13191.6	gi|410671438|ref|YP_006923809.1|	-	1.1e-11	45.4	0.0	9.6e-10	39.1	0.0	2.7	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|410671438|ref|YP_006923809.1|	-	3.1e-08	34.0	0.0	6.3e-08	33.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|410671438|ref|YP_006923809.1|	-	6.2e-08	33.1	0.0	1.5e-07	31.9	0.0	1.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_7	PF12775.7	gi|410671438|ref|YP_006923809.1|	-	7e-06	25.7	0.1	0.00032	20.3	0.0	2.2	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_11	PF13086.6	gi|410671438|ref|YP_006923809.1|	-	1e-05	25.4	0.0	2.7e-05	24.1	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
Cdc6_C	PF09079.11	gi|410671438|ref|YP_006923809.1|	-	7.1e-05	22.7	0.1	0.00022	21.1	0.0	1.9	2	0	0	2	2	1	1	CDC6,	C	terminal	winged	helix	domain
ATPase_2	PF01637.18	gi|410671438|ref|YP_006923809.1|	-	0.00013	22.0	0.0	0.00023	21.2	0.0	1.4	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
NACHT	PF05729.12	gi|410671438|ref|YP_006923809.1|	-	0.00017	21.5	0.0	0.00034	20.6	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
NB-ARC	PF00931.22	gi|410671438|ref|YP_006923809.1|	-	0.0004	19.6	0.0	0.00057	19.2	0.0	1.2	1	0	0	1	1	1	1	NB-ARC	domain
NTPase_1	PF03266.15	gi|410671438|ref|YP_006923809.1|	-	0.0022	17.9	0.1	0.0059	16.5	0.0	1.8	2	0	0	2	2	2	1	NTPase
T2SSE	PF00437.20	gi|410671438|ref|YP_006923809.1|	-	0.0025	16.9	0.0	0.0042	16.2	0.0	1.4	1	1	0	1	1	1	1	Type	II/IV	secretion	system	protein
Sigma54_activat	PF00158.26	gi|410671438|ref|YP_006923809.1|	-	0.0026	17.5	0.0	0.0041	16.8	0.0	1.3	1	0	0	1	1	1	1	Sigma-54	interaction	domain
DUF2075	PF09848.9	gi|410671438|ref|YP_006923809.1|	-	0.0028	17.0	0.0	0.0036	16.6	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
Zeta_toxin	PF06414.12	gi|410671438|ref|YP_006923809.1|	-	0.0036	16.6	0.0	0.0065	15.8	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
AAA_19	PF13245.6	gi|410671438|ref|YP_006923809.1|	-	0.004	17.5	0.1	0.0084	16.5	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
Imm30	PF15565.6	gi|410671438|ref|YP_006923809.1|	-	0.0042	17.1	0.0	0.91	9.6	0.1	2.6	2	0	0	2	2	2	1	Immunity	protein	30
KAP_NTPase	PF07693.14	gi|410671438|ref|YP_006923809.1|	-	0.0046	16.2	0.1	0.013	14.7	0.0	1.6	1	1	1	2	2	2	1	KAP	family	P-loop	domain
AAA_30	PF13604.6	gi|410671438|ref|YP_006923809.1|	-	0.0047	16.7	0.0	0.011	15.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_14	PF13173.6	gi|410671438|ref|YP_006923809.1|	-	0.0063	16.5	0.1	0.067	13.2	0.1	2.1	1	1	1	2	2	2	1	AAA	domain
RuvB_N	PF05496.12	gi|410671438|ref|YP_006923809.1|	-	0.0071	16.1	0.0	0.021	14.6	0.0	1.7	1	1	1	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_35	PF14516.6	gi|410671438|ref|YP_006923809.1|	-	0.0074	15.2	0.0	0.5	9.1	0.0	2.1	2	0	0	2	2	2	1	AAA-like	domain
AAA_32	PF13654.6	gi|410671438|ref|YP_006923809.1|	-	0.013	14.3	0.0	0.12	11.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
Viral_helicase1	PF01443.18	gi|410671438|ref|YP_006923809.1|	-	0.014	15.1	0.0	0.025	14.3	0.0	1.5	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
TIP49_C	PF17856.1	gi|410671438|ref|YP_006923809.1|	-	0.016	15.3	0.0	0.037	14.2	0.0	1.6	1	0	0	1	1	1	0	TIP49	AAA-lid	domain
TniB	PF05621.11	gi|410671438|ref|YP_006923809.1|	-	0.021	14.3	0.0	0.036	13.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	TniB	protein
DUF815	PF05673.13	gi|410671438|ref|YP_006923809.1|	-	0.025	13.7	0.0	0.1	11.7	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
IstB_IS21	PF01695.17	gi|410671438|ref|YP_006923809.1|	-	0.048	13.4	0.0	3.9	7.2	0.0	2.3	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
SRP54	PF00448.22	gi|410671438|ref|YP_006923809.1|	-	0.053	13.2	0.0	0.083	12.5	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_5	PF07728.14	gi|410671438|ref|YP_006923809.1|	-	0.055	13.5	0.0	0.17	11.9	0.0	1.8	2	1	0	2	2	1	0	AAA	domain	(dynein-related	subfamily)
Rad17	PF03215.15	gi|410671438|ref|YP_006923809.1|	-	0.065	13.2	0.1	0.16	11.9	0.1	1.7	1	1	0	1	1	1	0	Rad17	P-loop	domain
RNA_helicase	PF00910.22	gi|410671438|ref|YP_006923809.1|	-	0.065	13.6	0.0	0.13	12.6	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
AAA_24	PF13479.6	gi|410671438|ref|YP_006923809.1|	-	0.071	12.8	0.4	0.2	11.4	0.4	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|410671438|ref|YP_006923809.1|	-	0.075	13.2	0.0	0.14	12.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.19	gi|410671438|ref|YP_006923809.1|	-	0.08	12.5	0.0	0.11	12.0	0.0	1.2	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
ATPase	PF06745.13	gi|410671438|ref|YP_006923809.1|	-	0.11	11.8	0.2	1	8.7	0.1	2.4	2	1	0	2	2	2	0	KaiC
TrwB_AAD_bind	PF10412.9	gi|410671438|ref|YP_006923809.1|	-	0.12	11.2	0.0	0.21	10.5	0.0	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF45	PF01863.17	gi|410671439|ref|YP_006923810.1|	-	1.8e-55	188.2	0.5	2.1e-55	188.0	0.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF45
WLM	PF08325.10	gi|410671439|ref|YP_006923810.1|	-	0.0001	22.5	0.4	0.0002	21.5	0.4	1.4	1	0	0	1	1	1	1	WLM	domain
SprT-like	PF10263.9	gi|410671439|ref|YP_006923810.1|	-	0.024	14.5	0.2	0.054	13.3	0.2	1.8	1	1	0	1	1	1	0	SprT-like	family
Peptidase_M56	PF05569.11	gi|410671439|ref|YP_006923810.1|	-	0.038	13.2	0.2	0.062	12.5	0.2	1.3	1	0	0	1	1	1	0	BlaR1	peptidase	M56
Glyco_trans_A_1	PF09318.10	gi|410671439|ref|YP_006923810.1|	-	0.047	13.4	0.1	0.07	12.8	0.1	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	1	domain	A
SWI2_SNF2	PF18766.1	gi|410671440|ref|YP_006923811.1|	-	1.7e-76	256.9	0.0	6.1e-76	255.0	0.0	2.1	1	0	0	1	1	1	1	SWI2/SNF2	ATPase
HSDR_N	PF04313.14	gi|410671440|ref|YP_006923811.1|	-	4.8e-36	124.5	1.1	4.8e-36	124.5	1.1	2.5	2	1	0	2	2	2	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
ResIII	PF04851.15	gi|410671440|ref|YP_006923811.1|	-	2.6e-18	66.6	0.1	4.2e-17	62.7	0.0	2.9	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
HSDR_N_2	PF13588.6	gi|410671440|ref|YP_006923811.1|	-	0.0001	22.3	0.0	0.00042	20.3	0.0	2.1	1	0	0	1	1	1	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
DUF3387	PF11867.8	gi|410671440|ref|YP_006923811.1|	-	0.00029	20.3	13.8	0.00029	20.3	13.8	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3387)
RNase_J_C	PF17770.1	gi|410671440|ref|YP_006923811.1|	-	0.011	16.7	1.3	0.29	12.2	0.1	3.4	2	0	0	2	2	2	0	Ribonuclease	J	C-terminal	domain
PP28	PF10252.9	gi|410671440|ref|YP_006923811.1|	-	0.07	13.6	0.9	0.3	11.6	0.9	2.1	1	0	0	1	1	1	0	Casein	kinase	substrate	phosphoprotein	PP28
SAS-6_N	PF16531.5	gi|410671440|ref|YP_006923811.1|	-	5.1	7.8	5.3	33	5.1	0.1	3.4	2	1	1	3	3	3	0	Centriolar	protein	SAS	N-terminal
DUF4375	PF14300.6	gi|410671441|ref|YP_006923812.1|	-	0.35	11.1	1.8	5.7	7.2	1.8	2.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4375)
Methylase_S	PF01420.19	gi|410671442|ref|YP_006923813.1|	-	4.9e-31	108.2	2.0	2.2e-18	67.1	0.0	2.3	2	1	0	2	2	2	2	Type	I	restriction	modification	DNA	specificity	domain
DbpA	PF03880.15	gi|410671442|ref|YP_006923813.1|	-	0.081	12.9	0.0	0.22	11.6	0.0	1.7	1	0	0	1	1	1	0	DbpA	RNA	binding	domain
DUF1844	PF08899.11	gi|410671442|ref|YP_006923813.1|	-	0.17	12.2	0.6	0.35	11.2	0.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1844)
YhcG_C	PF06250.11	gi|410671444|ref|YP_006923815.1|	-	4.2e-50	169.6	0.2	7.1e-50	168.8	0.2	1.3	1	0	0	1	1	1	1	YhcG	PDDEXK	nuclease	domain
DUF1016_N	PF17761.1	gi|410671444|ref|YP_006923815.1|	-	4.6e-40	137.0	0.9	7e-40	136.4	0.9	1.3	1	0	0	1	1	1	1	DUF1016	N-terminal	domain
N6_Mtase	PF02384.16	gi|410671445|ref|YP_006923816.1|	-	7.8e-102	340.7	0.0	4.1e-101	338.4	0.0	2.0	3	0	0	3	3	3	1	N-6	DNA	Methylase
HsdM_N	PF12161.8	gi|410671445|ref|YP_006923816.1|	-	1.4e-25	90.5	0.6	1.4e-25	90.5	0.6	2.1	2	1	0	2	2	2	1	HsdM	N-terminal	domain
UPF0020	PF01170.18	gi|410671445|ref|YP_006923816.1|	-	1.9e-05	24.5	0.1	0.00012	21.8	0.1	2.2	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Eco57I	PF07669.11	gi|410671445|ref|YP_006923816.1|	-	3.1e-05	24.4	0.0	0.00018	22.0	0.0	2.3	2	1	0	2	2	2	1	Eco57I	restriction-modification	methylase
MTS	PF05175.14	gi|410671445|ref|YP_006923816.1|	-	0.0017	17.9	0.0	0.0043	16.6	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_31	PF13847.6	gi|410671445|ref|YP_006923816.1|	-	0.097	12.5	0.0	0.2	11.5	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
SPATA1_C	PF15743.5	gi|410671445|ref|YP_006923816.1|	-	0.18	11.9	2.3	0.41	10.7	2.3	1.6	1	0	0	1	1	1	0	Spermatogenesis-associated	C-terminus
Methylase_S	PF01420.19	gi|410671446|ref|YP_006923817.1|	-	2.5e-05	24.6	0.0	3.3e-05	24.2	0.0	1.2	1	0	0	1	1	1	1	Type	I	restriction	modification	DNA	specificity	domain
Cpn60_TCP1	PF00118.24	gi|410671448|ref|YP_006923819.1|	-	7.6e-185	615.2	24.5	8.6e-185	615.0	24.5	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
DUF3924	PF13062.6	gi|410671448|ref|YP_006923819.1|	-	0.058	13.3	0.1	0.23	11.4	0.0	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3924)
DUF5350	PF17299.2	gi|410671449|ref|YP_006923820.1|	-	4.5e-26	91.1	7.4	4.8e-26	91.0	7.4	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5350)
CxxCxxCC	PF03692.15	gi|410671450|ref|YP_006923821.1|	-	2.4e-11	44.1	1.6	2.4e-11	44.1	1.6	1.8	2	0	0	2	2	2	1	Putative	zinc-	or	iron-chelating	domain
Radical_SAM	PF04055.21	gi|410671451|ref|YP_006923822.1|	-	9e-26	91.2	0.1	4e-25	89.1	0.0	1.9	2	0	0	2	2	2	1	Radical	SAM	superfamily
B12-binding	PF02310.19	gi|410671451|ref|YP_006923822.1|	-	3.8e-09	36.6	0.0	8e-09	35.6	0.0	1.5	1	0	0	1	1	1	1	B12	binding	domain
DUF126	PF01989.16	gi|410671452|ref|YP_006923823.1|	-	1.8e-35	120.5	0.2	2.7e-35	120.0	0.2	1.3	1	0	0	1	1	1	1	Aconitase	X	swivel	domain
DUF521	PF04412.13	gi|410671453|ref|YP_006923824.1|	-	6e-156	519.2	0.3	6.8e-156	519.0	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
UbiD	PF01977.16	gi|410671454|ref|YP_006923825.1|	-	5.4e-116	387.8	4.4	6.1e-116	387.6	4.4	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
SGL	PF08450.12	gi|410671454|ref|YP_006923825.1|	-	0.16	11.5	0.0	0.28	10.7	0.0	1.3	1	0	0	1	1	1	0	SMP-30/Gluconolactonase/LRE-like	region
ABC_tran	PF00005.27	gi|410671455|ref|YP_006923826.1|	-	7.8e-23	81.5	0.0	1.3e-22	80.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|410671455|ref|YP_006923826.1|	-	6.8e-08	32.7	3.1	0.00024	21.0	0.2	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|410671455|ref|YP_006923826.1|	-	0.00054	20.2	0.0	0.0029	17.9	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|410671455|ref|YP_006923826.1|	-	0.00067	19.2	0.5	0.0033	16.9	0.2	1.9	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|410671455|ref|YP_006923826.1|	-	0.001	18.7	0.1	0.0023	17.6	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|410671455|ref|YP_006923826.1|	-	0.003	18.0	0.0	0.005	17.2	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|410671455|ref|YP_006923826.1|	-	0.0038	17.3	0.1	0.014	15.5	0.1	2.1	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_15	PF13175.6	gi|410671455|ref|YP_006923826.1|	-	0.004	16.9	1.8	0.032	13.9	0.3	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|410671455|ref|YP_006923826.1|	-	0.0053	16.7	0.0	0.0092	15.9	0.0	1.3	1	0	0	1	1	1	1	RsgA	GTPase
IstB_IS21	PF01695.17	gi|410671455|ref|YP_006923826.1|	-	0.011	15.4	0.1	0.17	11.6	0.0	2.1	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
DUF815	PF05673.13	gi|410671455|ref|YP_006923826.1|	-	0.012	14.8	0.0	0.018	14.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA_23	PF13476.6	gi|410671455|ref|YP_006923826.1|	-	0.014	15.9	0.2	0.024	15.1	0.2	1.3	1	0	0	1	1	1	0	AAA	domain
Rad17	PF03215.15	gi|410671455|ref|YP_006923826.1|	-	0.051	13.5	0.0	3.7	7.4	0.0	2.2	2	0	0	2	2	2	0	Rad17	P-loop	domain
AAA_30	PF13604.6	gi|410671455|ref|YP_006923826.1|	-	0.054	13.2	0.0	5.6	6.6	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|410671455|ref|YP_006923826.1|	-	0.095	13.1	0.0	0.23	11.9	0.0	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF389	PF04087.14	gi|410671456|ref|YP_006923827.1|	-	5.6e-35	120.4	20.0	5.6e-35	120.4	20.0	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF389)
DUF2919	PF11143.8	gi|410671456|ref|YP_006923827.1|	-	0.06	13.7	1.2	0.16	12.3	1.2	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2919)
HATPase_c	PF02518.26	gi|410671457|ref|YP_006923828.1|	-	5.4e-31	107.4	0.2	1.7e-30	105.8	0.2	1.9	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|410671457|ref|YP_006923828.1|	-	9e-22	77.3	1.1	1.8e-08	34.6	0.1	3.9	4	0	0	4	4	4	3	PAS	domain
PAS	PF00989.25	gi|410671457|ref|YP_006923828.1|	-	3.1e-20	72.3	0.0	5.7e-11	42.4	0.0	3.6	3	0	0	3	3	3	3	PAS	fold
PAS_3	PF08447.12	gi|410671457|ref|YP_006923828.1|	-	1.1e-19	70.5	0.0	2.3e-07	31.0	0.0	3.5	3	0	0	3	3	3	2	PAS	fold
HisKA	PF00512.25	gi|410671457|ref|YP_006923828.1|	-	1.1e-18	67.0	0.0	4e-18	65.2	0.0	2.1	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.7	gi|410671457|ref|YP_006923828.1|	-	1.4e-18	66.5	0.0	4.1e-10	39.4	0.0	3.0	3	0	0	3	3	3	2	PAS	domain
PAS_4	PF08448.10	gi|410671457|ref|YP_006923828.1|	-	1.3e-13	51.1	0.0	2.9e-06	27.5	0.0	2.9	3	0	0	3	3	3	2	PAS	fold
GAF_3	PF13492.6	gi|410671457|ref|YP_006923828.1|	-	6.3e-06	26.6	0.0	1.2e-05	25.7	0.0	1.5	1	0	0	1	1	1	1	GAF	domain
GAF	PF01590.26	gi|410671457|ref|YP_006923828.1|	-	0.00019	22.0	0.0	0.00037	21.1	0.0	1.5	1	0	0	1	1	1	1	GAF	domain
PAS_11	PF14598.6	gi|410671457|ref|YP_006923828.1|	-	0.00072	19.7	0.0	0.22	11.6	0.0	4.0	4	0	0	4	4	4	1	PAS	domain
HATPase_c_5	PF14501.6	gi|410671457|ref|YP_006923828.1|	-	0.0013	18.6	0.1	0.0049	16.8	0.1	2.0	1	0	0	1	1	1	1	GHKL	domain
AAL_decarboxy	PF03306.13	gi|410671457|ref|YP_006923828.1|	-	0.0087	15.4	0.1	0.021	14.1	0.1	1.6	1	0	0	1	1	1	1	Alpha-acetolactate	decarboxylase
PMC2NT	PF08066.12	gi|410671457|ref|YP_006923828.1|	-	0.0097	16.6	2.5	3.6	8.3	0.0	3.3	3	0	0	3	3	2	1	PMC2NT	(NUC016)	domain
HATPase_c_3	PF13589.6	gi|410671457|ref|YP_006923828.1|	-	0.012	15.4	0.1	0.031	14.1	0.1	1.7	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
ACP	PF06857.11	gi|410671457|ref|YP_006923828.1|	-	0.21	11.8	1.5	1.5	9.1	0.0	3.0	3	0	0	3	3	3	0	Malonate	decarboxylase	delta	subunit	(MdcD)
DUF5486	PF17588.2	gi|410671458|ref|YP_006923829.1|	-	0.048	13.6	0.9	3.6	7.5	0.2	2.3	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5486)
Acetyltransf_1	PF00583.25	gi|410671459|ref|YP_006923830.1|	-	3.1e-11	43.5	0.1	4e-11	43.2	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|410671459|ref|YP_006923830.1|	-	3.3e-08	33.8	0.0	5.9e-08	33.0	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|410671459|ref|YP_006923830.1|	-	1e-06	28.7	0.0	2e-06	27.8	0.0	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|410671459|ref|YP_006923830.1|	-	6.1e-06	26.1	0.0	9.6e-06	25.5	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|410671459|ref|YP_006923830.1|	-	0.00027	21.0	0.0	0.00085	19.4	0.0	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_15	PF17013.5	gi|410671459|ref|YP_006923830.1|	-	0.11	12.0	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	Putative	acetyl-transferase
zinc_ribbon_6	PF14599.6	gi|410671460|ref|YP_006923831.1|	-	0.0014	18.6	2.4	0.081	12.9	0.2	2.1	1	1	1	2	2	2	2	Zinc-ribbon
LIM	PF00412.22	gi|410671460|ref|YP_006923831.1|	-	0.034	14.4	1.7	0.044	14.0	1.7	1.2	1	0	0	1	1	1	0	LIM	domain
DZR	PF12773.7	gi|410671461|ref|YP_006923832.1|	-	0.008	16.2	0.9	0.016	15.2	0.9	1.6	1	1	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_4	PF13717.6	gi|410671461|ref|YP_006923832.1|	-	0.1	12.5	3.4	7.3	6.6	1.2	2.6	2	1	0	2	2	2	0	zinc-ribbon	domain
Auto_anti-p27	PF06677.12	gi|410671461|ref|YP_006923832.1|	-	0.17	12.1	0.2	0.17	12.1	0.2	2.0	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Nudix_N_2	PF14803.6	gi|410671461|ref|YP_006923832.1|	-	0.38	10.7	0.4	0.38	10.7	0.4	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
zf_UBZ	PF18439.1	gi|410671461|ref|YP_006923832.1|	-	0.48	10.1	2.7	2.2	8.0	0.0	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-C2H2_4	PF13894.6	gi|410671461|ref|YP_006923832.1|	-	8.4	7.5	8.0	32	5.7	3.8	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
DUF2196	PF09962.9	gi|410671462|ref|YP_006923833.1|	-	8.5e-30	102.5	4.4	9.2e-30	102.4	4.4	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2196)
Pyr_redox_2	PF07992.14	gi|410671464|ref|YP_006923835.1|	-	4.5e-52	177.1	0.2	6.1e-52	176.7	0.2	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|410671464|ref|YP_006923835.1|	-	7.6e-20	71.2	0.0	1.4e-19	70.4	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|410671464|ref|YP_006923835.1|	-	7.4e-19	68.1	0.9	7.2e-16	58.5	0.1	2.6	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|410671464|ref|YP_006923835.1|	-	6.1e-15	55.3	1.7	9.1e-13	48.1	0.0	2.1	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|410671464|ref|YP_006923835.1|	-	1.8e-06	28.0	3.3	0.00021	21.5	0.3	2.6	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|410671464|ref|YP_006923835.1|	-	0.00026	20.2	0.7	0.0054	15.9	0.2	2.3	2	0	0	2	2	2	1	FAD	binding	domain
DAO	PF01266.24	gi|410671464|ref|YP_006923835.1|	-	0.00076	19.2	5.4	0.35	10.4	0.5	3.0	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|410671464|ref|YP_006923835.1|	-	0.0018	17.5	1.8	0.01	15.0	1.4	2.2	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|410671464|ref|YP_006923835.1|	-	0.0022	16.8	4.5	0.29	9.8	0.5	2.8	2	1	1	3	3	3	2	HI0933-like	protein
3HCDH_N	PF02737.18	gi|410671464|ref|YP_006923835.1|	-	0.0026	17.7	0.8	1.6	8.5	0.2	2.7	3	0	0	3	3	3	2	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
K_oxygenase	PF13434.6	gi|410671464|ref|YP_006923835.1|	-	0.0057	15.8	0.1	0.27	10.3	0.0	2.4	2	1	1	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
ApbA	PF02558.16	gi|410671464|ref|YP_006923835.1|	-	0.017	14.8	0.4	0.2	11.3	0.1	2.3	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
AlaDh_PNT_C	PF01262.21	gi|410671464|ref|YP_006923835.1|	-	0.033	13.5	0.6	7.2	5.8	0.0	2.3	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|410671464|ref|YP_006923835.1|	-	0.037	13.4	0.1	0.2	11.0	0.1	2.2	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
FAD_binding_3	PF01494.19	gi|410671464|ref|YP_006923835.1|	-	0.059	12.6	0.0	4.5	6.4	0.0	2.3	2	0	0	2	2	2	0	FAD	binding	domain
THF_DHG_CYH_C	PF02882.19	gi|410671464|ref|YP_006923835.1|	-	0.11	11.8	0.0	0.23	10.8	0.0	1.5	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Thi4	PF01946.17	gi|410671464|ref|YP_006923835.1|	-	0.14	11.4	0.3	0.32	10.2	0.1	1.6	2	0	0	2	2	2	0	Thi4	family
GDI	PF00996.18	gi|410671464|ref|YP_006923835.1|	-	0.16	10.5	0.1	0.49	8.9	0.0	1.7	2	0	0	2	2	2	0	GDP	dissociation	inhibitor
F420_oxidored	PF03807.17	gi|410671464|ref|YP_006923835.1|	-	0.38	11.4	2.4	11	6.6	0.1	3.0	2	1	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Defensin_beta	PF00711.19	gi|410671464|ref|YP_006923835.1|	-	2.6	8.2	5.3	0.22	11.6	0.3	1.7	2	0	0	2	2	1	0	Beta	defensin
FAD_oxidored	PF12831.7	gi|410671464|ref|YP_006923835.1|	-	7.3	5.8	6.5	8.3	5.6	0.5	2.7	2	1	1	3	3	3	0	FAD	dependent	oxidoreductase
zinc_ribbon_6	PF14599.6	gi|410671465|ref|YP_006923836.1|	-	0.0076	16.2	0.8	0.013	15.5	0.8	1.4	1	1	0	1	1	1	1	Zinc-ribbon
ArfGap	PF01412.18	gi|410671465|ref|YP_006923836.1|	-	0.083	13.0	0.2	0.11	12.6	0.2	1.1	1	0	0	1	1	1	0	Putative	GTPase	activating	protein	for	Arf
DUF86	PF01934.17	gi|410671466|ref|YP_006923837.1|	-	1.1e-26	93.0	0.1	1.3e-26	92.7	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
NTP_transf_2	PF01909.23	gi|410671467|ref|YP_006923838.1|	-	7.7e-12	45.3	0.0	8.7e-12	45.2	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|410671467|ref|YP_006923838.1|	-	7.3e-11	42.0	0.1	8.2e-11	41.8	0.1	1.2	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
DNA_pol_B_palm	PF14792.6	gi|410671467|ref|YP_006923838.1|	-	0.012	15.8	0.0	0.015	15.5	0.0	1.4	1	1	0	1	1	1	0	DNA	polymerase	beta	palm
DUF294	PF03445.13	gi|410671467|ref|YP_006923838.1|	-	0.034	14.0	0.0	0.038	13.8	0.0	1.2	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
EndIII_4Fe-2S	PF10576.9	gi|410671468|ref|YP_006923839.1|	-	0.00038	20.7	3.1	0.00052	20.3	3.1	1.3	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
Cas_Cas02710	PF09670.10	gi|410671469|ref|YP_006923840.1|	-	9.5e-07	27.9	0.2	1.4e-06	27.4	0.2	1.2	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas02710)
Cas_APE2256	PF09651.10	gi|410671469|ref|YP_006923840.1|	-	0.00078	19.3	0.1	0.0014	18.6	0.1	1.5	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_APE2256)
HTH_27	PF13463.6	gi|410671469|ref|YP_006923840.1|	-	0.026	15.0	0.1	1.8	9.1	0.0	2.8	2	1	1	3	3	3	0	Winged	helix	DNA-binding	domain
DUF3972	PF13118.6	gi|410671469|ref|YP_006923840.1|	-	0.033	14.6	0.2	0.084	13.3	0.1	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3972)
SNase	PF00565.17	gi|410671471|ref|YP_006923842.1|	-	2.2e-09	37.7	0.3	3e-09	37.3	0.3	1.1	1	0	0	1	1	1	1	Staphylococcal	nuclease	homologue
CRR7	PF12095.8	gi|410671474|ref|YP_006923845.1|	-	0.1	13.0	3.0	0.15	12.6	2.8	1.4	1	1	0	1	1	1	0	Protein	CHLORORESPIRATORY	REDUCTION	7
DUF1699	PF08004.11	gi|410671476|ref|YP_006923847.1|	-	2.9e-61	204.9	0.5	3.2e-61	204.7	0.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1699)
Lactamase_B	PF00753.27	gi|410671478|ref|YP_006923849.1|	-	6.5e-17	62.2	0.5	9.1e-17	61.7	0.5	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|410671478|ref|YP_006923849.1|	-	2.5e-07	30.4	0.1	3.6e-07	29.9	0.1	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|410671478|ref|YP_006923849.1|	-	0.00077	18.9	0.0	0.0012	18.3	0.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|410671478|ref|YP_006923849.1|	-	0.022	14.6	0.7	0.16	11.8	0.7	2.4	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
Peptidase_M42	PF05343.14	gi|410671478|ref|YP_006923849.1|	-	0.5	9.3	3.8	4.3	6.3	0.0	2.6	2	1	1	3	3	3	0	M42	glutamyl	aminopeptidase
DUF3006	PF11213.8	gi|410671479|ref|YP_006923850.1|	-	2.3e-19	69.4	2.5	2.6e-19	69.2	2.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3006)
CHS5_N	PF16892.5	gi|410671479|ref|YP_006923850.1|	-	0.00035	20.5	0.1	0.00046	20.1	0.1	1.2	1	0	0	1	1	1	1	Chitin	biosynthesis	protein	CHS5	N-terminus
DUF576	PF04507.12	gi|410671483|ref|YP_006923854.1|	-	0.065	12.7	0.0	0.074	12.5	0.0	1.1	1	0	0	1	1	1	0	Csa1	family
DpnI_C	PF17726.1	gi|410671483|ref|YP_006923854.1|	-	0.13	12.4	0.2	0.36	11.0	0.1	1.8	1	1	1	2	2	2	0	Dam-replacing	HTH	domain
Ig_4	PF16680.5	gi|410671486|ref|YP_006923857.1|	-	0.47	10.8	4.3	1.2	9.5	3.7	2.1	1	1	0	1	1	1	0	T-cell	surface	glycoprotein	CD3	delta	chain
Radical_SAM	PF04055.21	gi|410671488|ref|YP_006923859.1|	-	1.1e-20	74.7	0.1	1.8e-20	74.0	0.1	1.4	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|410671488|ref|YP_006923859.1|	-	2.5e-11	43.7	0.3	4.8e-11	42.8	0.1	1.6	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|410671488|ref|YP_006923859.1|	-	5.5e-08	33.2	0.1	8.1e-08	32.6	0.1	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
AAA_17	PF13207.6	gi|410671489|ref|YP_006923860.1|	-	1.8e-05	25.2	0.3	3.7e-05	24.1	0.2	1.5	2	0	0	2	2	2	1	AAA	domain
Radical_SAM	PF04055.21	gi|410671490|ref|YP_006923861.1|	-	6.4e-17	62.4	0.1	7.7e-17	62.2	0.1	1.1	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|410671490|ref|YP_006923861.1|	-	9.5e-12	45.1	0.4	1.8e-11	44.2	0.4	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|410671490|ref|YP_006923861.1|	-	7.9e-09	35.9	0.2	1.3e-08	35.2	0.2	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
TPR_19	PF14559.6	gi|410671491|ref|YP_006923862.1|	-	0.00025	21.5	2.4	0.47	11.0	0.0	4.7	5	0	0	5	5	5	1	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|410671491|ref|YP_006923862.1|	-	0.00079	19.7	8.2	1	9.7	0.2	5.4	5	2	0	5	5	5	1	Tetratricopeptide	repeat
TPR_MalT	PF17874.1	gi|410671491|ref|YP_006923862.1|	-	0.0019	17.6	0.2	4.4	6.6	0.0	3.4	3	1	0	4	4	4	2	MalT-like	TPR	region
TPR_2	PF07719.17	gi|410671491|ref|YP_006923862.1|	-	0.0024	17.8	15.2	0.072	13.2	0.2	6.8	8	0	0	8	8	8	1	Tetratricopeptide	repeat
TPR_1	PF00515.28	gi|410671491|ref|YP_006923862.1|	-	0.0074	16.1	13.7	0.52	10.2	0.1	5.9	6	0	0	6	6	6	2	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|410671491|ref|YP_006923862.1|	-	0.0091	16.0	0.6	4.2	7.6	0.1	4.7	5	0	0	5	5	5	1	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|410671491|ref|YP_006923862.1|	-	0.023	14.9	13.0	1.5	9.2	0.0	6.5	6	0	0	6	6	6	0	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|410671491|ref|YP_006923862.1|	-	0.11	13.2	2.8	2.1	9.1	0.1	4.3	5	0	0	5	5	5	0	Tetratricopeptide	repeat
TPR_21	PF09976.9	gi|410671491|ref|YP_006923862.1|	-	0.12	12.0	2.1	0.75	9.5	0.0	2.9	3	1	0	3	3	3	0	Tetratricopeptide	repeat-like	domain
ANAPC3	PF12895.7	gi|410671491|ref|YP_006923862.1|	-	1.6	9.0	14.3	7	7.0	0.1	5.3	5	1	2	7	7	7	0	Anaphase-promoting	complex,	cyclosome,	subunit	3
CPBP	PF02517.16	gi|410671492|ref|YP_006923863.1|	-	1e-09	38.6	6.4	1e-09	38.6	6.4	2.6	2	1	0	2	2	2	1	CPBP	intramembrane	metalloprotease
Epiglycanin_C	PF14654.6	gi|410671492|ref|YP_006923863.1|	-	0.24	11.5	1.6	1.5	8.9	0.1	2.3	2	0	0	2	2	2	0	Mucin,	catalytic,	TM	and	cytoplasmic	tail	region
Pox_P21	PF05313.12	gi|410671492|ref|YP_006923863.1|	-	2.8	7.5	5.6	0.79	9.3	0.2	2.2	2	1	0	2	2	2	0	Poxvirus	P21	membrane	protein
DUF1525	PF07511.11	gi|410671493|ref|YP_006923864.1|	-	0.06	13.5	0.3	0.066	13.4	0.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1525)
PhoU	PF01895.19	gi|410671493|ref|YP_006923864.1|	-	0.11	12.9	5.2	0.13	12.7	5.2	1.3	1	1	0	1	1	1	0	PhoU	domain
MCM_lid	PF17855.1	gi|410671494|ref|YP_006923865.1|	-	0.036	14.5	0.0	0.074	13.5	0.0	1.5	1	0	0	1	1	1	0	MCM	AAA-lid	domain
R2K_2	PF18299.1	gi|410671494|ref|YP_006923865.1|	-	0.14	12.0	0.0	0.31	10.9	0.0	1.5	1	0	0	1	1	1	0	ATP-grasp	domain,	R2K	clade	family	2
Cdc6_C	PF09079.11	gi|410671495|ref|YP_006923866.1|	-	1.2e-08	34.8	0.4	5.8e-08	32.6	0.3	2.2	2	0	0	2	2	2	1	CDC6,	C	terminal	winged	helix	domain
AAA_16	PF13191.6	gi|410671495|ref|YP_006923866.1|	-	0.0073	16.7	0.0	0.013	15.9	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
DUF815	PF05673.13	gi|410671495|ref|YP_006923866.1|	-	0.018	14.2	0.0	0.034	13.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
FtsK_SpoIIIE	PF01580.18	gi|410671495|ref|YP_006923866.1|	-	0.084	12.2	0.1	0.27	10.6	0.0	1.8	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
EVE	PF01878.18	gi|410671502|ref|YP_006923873.1|	-	0.0011	19.0	0.0	0.0025	17.8	0.0	1.7	1	0	0	1	1	1	1	EVE	domain
DUF4485	PF14846.6	gi|410671502|ref|YP_006923873.1|	-	0.029	14.4	0.0	0.064	13.3	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4485)
Acetyltransf_1	PF00583.25	gi|410671502|ref|YP_006923873.1|	-	0.049	13.9	0.0	0.13	12.5	0.0	1.7	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	family
Acetyltransf_4	PF13420.7	gi|410671503|ref|YP_006923874.1|	-	2.5e-05	24.4	0.1	0.0001	22.5	0.1	2.1	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
FANCI_S3	PF14677.6	gi|410671503|ref|YP_006923874.1|	-	0.0086	15.8	1.7	0.019	14.7	1.7	1.5	1	0	0	1	1	1	1	FANCI	solenoid	3
Acetyltransf_10	PF13673.7	gi|410671503|ref|YP_006923874.1|	-	0.026	14.5	0.1	0.14	12.1	0.0	2.2	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
N6_Mtase	PF02384.16	gi|410671504|ref|YP_006923875.1|	-	2.4e-56	191.3	0.0	4.5e-56	190.4	0.0	1.4	1	1	0	1	1	1	1	N-6	DNA	Methylase
HsdM_N	PF12161.8	gi|410671504|ref|YP_006923875.1|	-	1.3e-14	55.0	0.4	3.5e-14	53.6	0.1	1.9	2	0	0	2	2	2	1	HsdM	N-terminal	domain
UPF0020	PF01170.18	gi|410671504|ref|YP_006923875.1|	-	2.9e-09	36.9	0.0	4.5e-09	36.3	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
MTS	PF05175.14	gi|410671504|ref|YP_006923875.1|	-	0.0025	17.4	0.0	0.015	14.8	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	small	domain
Eco57I	PF07669.11	gi|410671504|ref|YP_006923875.1|	-	0.037	14.5	0.0	0.085	13.4	0.0	1.6	1	0	0	1	1	1	0	Eco57I	restriction-modification	methylase
Tubulin_C	PF03953.17	gi|410671504|ref|YP_006923875.1|	-	0.15	12.2	0.0	0.29	11.3	0.0	1.4	1	0	0	1	1	1	0	Tubulin	C-terminal	domain
AviRa	PF11599.8	gi|410671504|ref|YP_006923875.1|	-	0.19	11.1	0.7	1.8	7.9	0.0	2.7	4	0	0	4	4	4	0	RRNA	methyltransferase	AviRa
AAA_19	PF13245.6	gi|410671506|ref|YP_006923877.1|	-	7.5e-09	36.1	0.0	8.2e-07	29.5	0.0	3.0	2	1	0	2	2	2	1	AAA	domain
UvrD-helicase	PF00580.21	gi|410671506|ref|YP_006923877.1|	-	1.5e-08	34.5	0.0	3.6e-06	26.7	0.0	2.3	1	1	0	2	2	2	2	UvrD/REP	helicase	N-terminal	domain
AAA_30	PF13604.6	gi|410671506|ref|YP_006923877.1|	-	4e-06	26.7	0.0	0.01	15.6	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
Viral_helicase1	PF01443.18	gi|410671506|ref|YP_006923877.1|	-	0.0032	17.3	0.0	0.71	9.6	0.0	2.5	3	0	0	3	3	3	2	Viral	(Superfamily	1)	RNA	helicase
AAA_22	PF13401.6	gi|410671506|ref|YP_006923877.1|	-	0.017	15.4	0.0	0.48	10.7	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
PhoH	PF02562.16	gi|410671506|ref|YP_006923877.1|	-	0.021	14.3	0.1	1.5	8.3	0.0	2.3	2	0	0	2	2	2	0	PhoH-like	protein
ATPase_2	PF01637.18	gi|410671506|ref|YP_006923877.1|	-	0.049	13.5	0.0	0.18	11.7	0.0	1.8	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_16	PF13191.6	gi|410671506|ref|YP_006923877.1|	-	0.063	13.7	0.0	0.12	12.7	0.0	1.6	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_14	PF13173.6	gi|410671506|ref|YP_006923877.1|	-	0.14	12.2	0.0	8	6.5	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
Daxx	PF03344.15	gi|410671507|ref|YP_006923878.1|	-	0.044	13.9	0.4	0.12	12.5	0.1	1.9	2	0	0	2	2	2	0	Daxx	N-terminal	Rassf1C-interacting	domain
Peptidase_S80	PF07230.11	gi|410671511|ref|YP_006923882.1|	-	0.079	11.2	0.2	0.072	11.4	0.2	1.0	1	0	0	1	1	1	0	Bacteriophage	T4-like	capsid	assembly	protein	(Gp20)
Flg_new	PF09479.10	gi|410671512|ref|YP_006923883.1|	-	5.2e-125	407.7	103.5	1.9e-14	53.6	6.8	11.9	11	0	0	11	11	11	11	Listeria-Bacteroides	repeat	domain	(List_Bact_rpt)
LRR_5	PF13306.6	gi|410671512|ref|YP_006923883.1|	-	9.2e-81	268.1	25.2	9.4e-24	83.8	1.7	5.6	3	2	3	6	6	6	5	BspA	type	Leucine	rich	repeat	region	(6	copies)
LRR_8	PF13855.6	gi|410671512|ref|YP_006923883.1|	-	3e-07	30.1	0.1	1.7	8.4	0.0	7.3	8	2	1	9	9	9	2	Leucine	rich	repeat
YadA_anchor	PF03895.15	gi|410671512|ref|YP_006923883.1|	-	0.024	14.7	1.0	11	6.2	0.1	3.7	2	0	0	2	2	2	0	YadA-like	membrane	anchor	domain
Ribosomal_L27	PF01016.19	gi|410671512|ref|YP_006923883.1|	-	0.042	13.9	3.0	24	5.0	0.0	5.3	7	1	1	8	8	8	0	Ribosomal	L27	protein
DUF3806	PF12713.7	gi|410671512|ref|YP_006923883.1|	-	0.051	13.4	1.8	9.2	6.1	0.1	4.1	5	0	0	5	5	5	0	Domain	of	unknown	function	(DUF3806)
IPI_T4	PF11634.8	gi|410671512|ref|YP_006923883.1|	-	0.097	12.7	2.0	3.3	7.8	0.0	3.8	4	0	0	4	4	4	0	Nuclease	inhibitor	from	bacteriophage	T4
DUF2850	PF11012.8	gi|410671512|ref|YP_006923883.1|	-	9.4	6.6	10.5	6.9	7.0	0.1	4.5	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2850)
HTH_23	PF13384.6	gi|410671513|ref|YP_006923884.1|	-	0.06	13.2	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
TBP	PF00352.21	gi|410671514|ref|YP_006923885.1|	-	3.5e-26	91.0	0.1	4.9e-12	45.6	0.0	2.1	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
TMEM223	PF14640.6	gi|410671514|ref|YP_006923885.1|	-	0.081	13.1	0.1	0.13	12.4	0.1	1.3	1	0	0	1	1	1	0	Transmembrane	protein	223
Phage_integrase	PF00589.22	gi|410671516|ref|YP_006923887.1|	-	5.6e-19	68.6	0.1	9.8e-19	67.8	0.1	1.4	1	0	0	1	1	1	1	Phage	integrase	family
zinc_ribbon_2	PF13240.6	gi|410671516|ref|YP_006923887.1|	-	0.0098	15.6	5.9	0.02	14.6	5.9	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
zf_C2H2_13	PF18508.1	gi|410671516|ref|YP_006923887.1|	-	0.011	15.4	0.9	0.031	13.9	0.9	1.7	1	0	0	1	1	1	0	Zinc	finger	domain
DZR	PF12773.7	gi|410671516|ref|YP_006923887.1|	-	0.017	15.1	5.4	0.039	14.0	5.5	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
Phage_int_SAM_4	PF13495.6	gi|410671516|ref|YP_006923887.1|	-	0.059	13.9	0.0	0.18	12.3	0.0	1.8	1	0	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
phiKZ_IP	PF12699.7	gi|410671516|ref|YP_006923887.1|	-	0.059	12.5	0.1	0.089	11.9	0.1	1.2	1	0	0	1	1	1	0	phiKZ-like	phage	internal	head	proteins
CEBP_ZZ	PF16366.5	gi|410671516|ref|YP_006923887.1|	-	0.17	12.2	5.2	0.071	13.4	2.1	2.0	2	0	0	2	2	2	0	Cytoplasmic	polyadenylation	element-binding	protein	ZZ	domain
Spt4	PF06093.13	gi|410671516|ref|YP_006923887.1|	-	0.53	10.4	3.6	1.1	9.5	3.6	1.5	1	0	0	1	1	1	0	Spt4/RpoE2	zinc	finger
zf-ribbon_3	PF13248.6	gi|410671516|ref|YP_006923887.1|	-	0.72	9.3	6.3	1.7	8.2	6.3	1.6	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-RanBP	PF00641.18	gi|410671516|ref|YP_006923887.1|	-	7.6	6.0	8.8	14	5.1	8.8	1.4	1	0	0	1	1	1	0	Zn-finger	in	Ran	binding	protein	and	others
Phage_integrase	PF00589.22	gi|410671517|ref|YP_006923888.1|	-	1.5e-19	70.4	0.1	4.2e-19	69.0	0.0	1.8	2	0	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|410671517|ref|YP_006923888.1|	-	1.3e-05	25.4	0.1	4.1e-05	23.8	0.1	1.9	2	0	0	2	2	1	1	Phage	integrase,	N-terminal	SAM-like	domain
zf-ribbon_3	PF13248.6	gi|410671517|ref|YP_006923888.1|	-	0.00033	20.0	1.8	0.00067	19.0	1.8	1.6	1	0	0	1	1	1	1	zinc-ribbon	domain
Phage_int_SAM_4	PF13495.6	gi|410671517|ref|YP_006923888.1|	-	0.00082	19.8	0.1	0.0032	17.9	0.0	2.1	2	1	0	2	2	1	1	Phage	integrase,	N-terminal	SAM-like	domain
UPF0547	PF10571.9	gi|410671517|ref|YP_006923888.1|	-	0.0024	17.9	1.6	0.0053	16.8	1.6	1.5	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
DZR	PF12773.7	gi|410671517|ref|YP_006923888.1|	-	0.0052	16.8	1.5	0.011	15.8	1.5	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|410671517|ref|YP_006923888.1|	-	0.013	15.4	0.2	0.03	14.3	0.2	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_2	PF13240.6	gi|410671517|ref|YP_006923888.1|	-	0.015	15.0	5.2	0.027	14.2	5.2	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
AdoMet_dc	PF02675.15	gi|410671517|ref|YP_006923888.1|	-	0.12	12.7	0.0	0.28	11.5	0.0	1.6	1	0	0	1	1	1	0	S-adenosylmethionine	decarboxylase
zinc_ribbon_4	PF13717.6	gi|410671517|ref|YP_006923888.1|	-	0.2	11.6	2.9	2.9	7.9	0.1	2.8	3	0	0	3	3	3	0	zinc-ribbon	domain
Nif11	PF07862.11	gi|410671517|ref|YP_006923888.1|	-	0.22	11.9	0.6	11	6.4	0.0	3.2	4	0	0	4	4	4	0	Nif11	domain
Aldolase_II	PF00596.21	gi|410671518|ref|YP_006923889.1|	-	3.3e-34	118.4	0.1	3.7e-34	118.3	0.1	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
CDP-OH_P_transf	PF01066.21	gi|410671519|ref|YP_006923890.1|	-	1.2e-12	48.4	0.5	1.2e-12	48.4	0.5	2.4	2	1	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
TetR_C_31	PF17940.1	gi|410671519|ref|YP_006923890.1|	-	0.0059	16.8	0.3	0.26	11.5	0.2	2.2	1	1	1	2	2	2	2	Tetracyclin	repressor-like,	C-terminal	domain
Archease	PF01951.16	gi|410671520|ref|YP_006923891.1|	-	9.3e-45	152.3	0.7	1e-44	152.1	0.7	1.0	1	0	0	1	1	1	1	Archease	protein	family	(MTH1598/TM1083)
RtcB	PF01139.17	gi|410671521|ref|YP_006923892.1|	-	2.1e-171	570.6	0.1	2.4e-171	570.5	0.1	1.0	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
DUF993	PF06187.11	gi|410671521|ref|YP_006923892.1|	-	0.012	14.6	0.1	0.018	14.0	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF993)
TGT_C2	PF14810.6	gi|410671522|ref|YP_006923893.1|	-	1.5e-26	92.3	0.0	2.5e-26	91.6	0.0	1.4	1	0	0	1	1	1	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
PUA	PF01472.20	gi|410671522|ref|YP_006923893.1|	-	5.9e-13	48.6	0.7	1.5e-12	47.3	0.2	1.8	2	1	0	2	2	2	1	PUA	domain
Phage_CI_C	PF16452.5	gi|410671522|ref|YP_006923893.1|	-	0.0051	17.1	0.0	0.0085	16.4	0.0	1.4	1	0	0	1	1	1	1	Bacteriophage	CI	repressor	C-terminal	domain
UPF0113	PF03657.13	gi|410671522|ref|YP_006923893.1|	-	0.022	15.0	0.0	0.043	14.1	0.0	1.5	1	0	0	1	1	1	0	UPF0113	PUA	domain
PUA_3	PF17785.1	gi|410671522|ref|YP_006923893.1|	-	0.1	12.5	0.0	0.26	11.1	0.0	1.7	1	0	0	1	1	1	0	PUA-like	domain
Tex_YqgF	PF16921.5	gi|410671522|ref|YP_006923893.1|	-	0.16	12.4	0.0	0.29	11.6	0.0	1.4	1	0	0	1	1	1	0	Tex	protein	YqgF-like	domain
AbrB_C	PF18277.1	gi|410671522|ref|YP_006923893.1|	-	0.19	11.4	0.1	12	5.6	0.1	2.3	2	0	0	2	2	2	0	AbrB	C-terminal	domain
Bactofilin	PF04519.13	gi|410671523|ref|YP_006923894.1|	-	7.4e-11	42.2	13.7	0.0036	17.6	1.6	4.4	2	2	1	3	3	3	2	Polymer-forming	cytoskeletal
Hexapep	PF00132.24	gi|410671523|ref|YP_006923894.1|	-	1.4	8.8	23.9	0.47	10.3	1.1	6.1	6	1	1	7	7	7	0	Bacterial	transferase	hexapeptide	(six	repeats)
DUF5422	PF17459.2	gi|410671524|ref|YP_006923895.1|	-	0.031	14.5	7.8	0.035	14.3	7.8	1.0	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5422)
Aminotran_3	PF00202.21	gi|410671525|ref|YP_006923896.1|	-	6.8e-126	420.2	0.5	8e-126	420.0	0.5	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.21	gi|410671525|ref|YP_006923896.1|	-	2.8e-07	30.0	0.0	3.5e-07	29.7	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|410671525|ref|YP_006923896.1|	-	8.8e-05	21.6	0.0	0.001	18.1	0.0	2.3	2	1	0	2	2	2	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|410671525|ref|YP_006923896.1|	-	0.00024	20.5	0.5	0.00058	19.2	0.4	1.6	1	1	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.17	gi|410671525|ref|YP_006923896.1|	-	0.00027	20.4	0.5	0.00069	19.0	0.5	1.6	1	1	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
DUF1860	PF08949.10	gi|410671525|ref|YP_006923896.1|	-	0.0028	17.4	0.0	0.0054	16.5	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1860)
Cys_Met_Meta_PP	PF01053.20	gi|410671525|ref|YP_006923896.1|	-	0.0077	14.8	0.1	0.011	14.3	0.1	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.21	gi|410671526|ref|YP_006923897.1|	-	1.7e-55	188.7	0.0	1.9e-55	188.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|410671526|ref|YP_006923897.1|	-	9.6e-06	25.1	0.0	1.4e-05	24.6	0.0	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Alliinase_C	PF04864.13	gi|410671526|ref|YP_006923897.1|	-	1.9e-05	23.7	0.0	6.6e-05	22.0	0.0	1.7	2	0	0	2	2	2	1	Allinase
Cys_Met_Meta_PP	PF01053.20	gi|410671526|ref|YP_006923897.1|	-	0.025	13.1	0.0	0.096	11.2	0.0	1.8	2	0	0	2	2	2	0	Cys/Met	metabolism	PLP-dependent	enzyme
BofC_C	PF08955.10	gi|410671526|ref|YP_006923897.1|	-	0.073	13.1	0.0	2.1	8.5	0.0	2.5	1	1	1	2	2	2	0	BofC	C-terminal	domain
DUF3670	PF12419.8	gi|410671526|ref|YP_006923897.1|	-	0.078	12.8	0.0	0.15	11.9	0.0	1.5	1	1	0	1	1	1	0	SNF2	Helicase	protein
DHNA	PF04038.12	gi|410671527|ref|YP_006923898.1|	-	4e-45	152.8	0.0	4.5e-45	152.6	0.0	1.0	1	0	0	1	1	1	1	Dihydroneopterin	aldolase
CDP-OH_P_transf	PF01066.21	gi|410671528|ref|YP_006923899.1|	-	2.3e-10	41.1	3.2	2.3e-10	41.1	3.2	3.6	3	1	0	3	3	3	1	CDP-alcohol	phosphatidyltransferase
PS_Dcarbxylase	PF02666.15	gi|410671529|ref|YP_006923900.1|	-	4e-28	98.4	3.9	1.7e-24	86.5	1.3	2.1	1	1	1	2	2	2	2	Phosphatidylserine	decarboxylase
RnfC_N	PF13375.6	gi|410671529|ref|YP_006923900.1|	-	0.014	15.4	1.0	2.9	7.9	0.0	3.6	1	1	3	4	4	4	0	RnfC	Barrel	sandwich	hybrid	domain
Exosortase_EpsH	PF09721.10	gi|410671530|ref|YP_006923901.1|	-	1.2e-13	51.2	18.0	1.5e-13	50.9	18.0	1.1	1	0	0	1	1	1	1	Transmembrane	exosortase	(Exosortase_EpsH)
Pox_P21	PF05313.12	gi|410671530|ref|YP_006923901.1|	-	9.9	5.7	11.4	0.46	10.0	3.2	2.2	2	0	0	2	2	2	0	Poxvirus	P21	membrane	protein
NUDIX	PF00293.28	gi|410671531|ref|YP_006923902.1|	-	1.1e-20	74.0	0.0	1.2e-20	73.9	0.0	1.0	1	0	0	1	1	1	1	NUDIX	domain
DUF4916	PF16262.5	gi|410671531|ref|YP_006923902.1|	-	0.0031	17.0	0.0	0.027	14.0	0.0	2.0	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4916)
TFIIS_C	PF01096.18	gi|410671532|ref|YP_006923903.1|	-	2e-17	62.7	2.8	2e-17	62.7	2.8	2.9	3	0	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.16	gi|410671532|ref|YP_006923903.1|	-	1.1e-08	34.8	10.2	7.4e-08	32.1	2.5	3.2	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
OrfB_Zn_ribbon	PF07282.11	gi|410671532|ref|YP_006923903.1|	-	0.00037	20.4	1.4	0.00037	20.4	1.4	2.6	1	1	0	2	2	2	1	Putative	transposase	DNA-binding	domain
zf_UBZ	PF18439.1	gi|410671532|ref|YP_006923903.1|	-	0.0043	16.6	4.4	1.8	8.2	0.0	3.3	3	0	0	3	3	3	2	Ubiquitin-Binding	Zinc	Finger
zf-ACC	PF17848.1	gi|410671532|ref|YP_006923903.1|	-	0.015	15.4	7.9	8.9	6.5	0.3	3.6	3	0	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
Nudix_N_2	PF14803.6	gi|410671532|ref|YP_006923903.1|	-	0.02	14.8	5.3	0.31	11.0	0.2	3.4	3	1	0	3	3	3	0	Nudix	N-terminal
DNA_RNApol_7kD	PF03604.13	gi|410671532|ref|YP_006923903.1|	-	0.032	13.9	0.0	0.032	13.9	0.0	3.2	3	1	0	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
IBR	PF01485.21	gi|410671532|ref|YP_006923903.1|	-	0.046	13.9	9.8	2.1	8.7	6.7	3.0	2	1	0	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
zf-RING_7	PF02591.15	gi|410671532|ref|YP_006923903.1|	-	0.086	13.0	1.1	3.9	7.7	0.1	3.2	3	0	0	3	3	3	0	C4-type	zinc	ribbon	domain
zf-tcix	PF14952.6	gi|410671532|ref|YP_006923903.1|	-	0.13	11.9	12.6	0.24	11.0	3.9	3.2	3	1	0	3	3	3	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-ribbon_3	PF13248.6	gi|410671532|ref|YP_006923903.1|	-	0.14	11.6	15.0	1.3	8.6	0.1	3.7	3	1	0	3	3	3	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.11	gi|410671532|ref|YP_006923903.1|	-	0.37	10.5	9.6	0.39	10.4	0.8	3.0	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
DZR	PF12773.7	gi|410671532|ref|YP_006923903.1|	-	0.39	10.8	12.9	2.3e+02	1.9	12.9	3.0	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_4	PF13717.6	gi|410671532|ref|YP_006923903.1|	-	0.6	10.1	16.5	2.1	8.3	0.2	3.9	3	1	0	3	3	3	0	zinc-ribbon	domain
UPF0547	PF10571.9	gi|410671532|ref|YP_006923903.1|	-	0.68	10.1	12.4	2.6	8.2	0.0	3.9	3	1	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
Ogr_Delta	PF04606.12	gi|410671532|ref|YP_006923903.1|	-	0.75	9.8	9.6	0.98	9.5	0.4	3.3	3	0	0	3	3	3	0	Ogr/Delta-like	zinc	finger
Zn_Tnp_IS1595	PF12760.7	gi|410671532|ref|YP_006923903.1|	-	0.78	9.8	9.5	0.21	11.6	0.6	2.6	2	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
zf-3CxxC_2	PF17180.4	gi|410671532|ref|YP_006923903.1|	-	0.81	10.5	11.5	18	6.1	1.1	3.3	2	2	1	3	3	3	0	Zinc-binding	domain
Zn-ribbon_8	PF09723.10	gi|410671532|ref|YP_006923903.1|	-	0.92	9.7	10.4	1.6	8.9	2.3	3.7	3	1	0	3	3	3	0	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|410671532|ref|YP_006923903.1|	-	0.97	9.2	16.1	6.9	6.5	0.4	4.2	5	0	0	5	5	4	0	zinc-ribbon	domain
GFA	PF04828.14	gi|410671532|ref|YP_006923903.1|	-	3.5	8.0	10.4	0.87	10.0	0.4	2.9	1	1	2	3	3	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-TFIIB	PF13453.6	gi|410671532|ref|YP_006923903.1|	-	4.1	6.8	9.1	4.8	6.6	1.7	3.1	3	1	0	3	3	3	0	Transcription	factor	zinc-finger
Rpr2	PF04032.16	gi|410671532|ref|YP_006923903.1|	-	8.7	6.7	9.2	46	4.4	9.2	2.0	1	1	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
PCNA_N	PF00705.18	gi|410671533|ref|YP_006923904.1|	-	6e-16	58.3	0.4	2.5e-15	56.3	0.2	1.9	2	1	1	3	3	3	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.15	gi|410671533|ref|YP_006923904.1|	-	3.1e-08	33.9	0.0	1.7e-07	31.5	0.0	2.2	2	1	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Rad9	PF04139.13	gi|410671533|ref|YP_006923904.1|	-	0.00017	21.1	0.0	0.00069	19.1	0.0	1.8	2	0	0	2	2	2	1	Rad9
DNA_primase_lrg	PF04104.14	gi|410671534|ref|YP_006923905.1|	-	2.2e-33	115.8	0.1	5.7e-33	114.5	0.1	1.5	1	1	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
GATase_3	PF07685.14	gi|410671535|ref|YP_006923906.1|	-	4.2e-33	114.6	0.0	5.7e-33	114.2	0.0	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
AAA_26	PF13500.6	gi|410671535|ref|YP_006923906.1|	-	3.1e-21	76.1	1.0	1.3e-13	51.3	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
CbiA	PF01656.23	gi|410671535|ref|YP_006923906.1|	-	6.8e-18	65.0	0.0	1.3e-17	64.1	0.0	1.5	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Peptidase_S51	PF03575.17	gi|410671535|ref|YP_006923906.1|	-	0.088	12.4	0.0	0.15	11.7	0.0	1.3	1	0	0	1	1	1	0	Peptidase	family	S51
DUF1611	PF07755.11	gi|410671535|ref|YP_006923906.1|	-	0.13	11.5	0.4	0.25	10.6	0.4	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
Radical_SAM	PF04055.21	gi|410671536|ref|YP_006923907.1|	-	5.4e-32	111.5	0.1	8.1e-32	110.9	0.1	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Mob_synth_C	PF06463.13	gi|410671536|ref|YP_006923907.1|	-	1.7e-18	66.8	0.0	3.3e-18	65.9	0.0	1.5	1	0	0	1	1	1	1	Molybdenum	Cofactor	Synthesis	C
Fer4_14	PF13394.6	gi|410671536|ref|YP_006923907.1|	-	1.9e-07	31.2	0.0	4e-07	30.2	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|410671536|ref|YP_006923907.1|	-	4.4e-07	30.3	0.0	1.4e-06	28.6	0.0	1.8	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
PAS_8	PF13188.7	gi|410671537|ref|YP_006923908.1|	-	0.18	11.8	0.0	0.2	11.7	0.0	1.1	1	0	0	1	1	1	0	PAS	domain
SurE	PF01975.17	gi|410671538|ref|YP_006923909.1|	-	1.2e-51	175.3	0.0	1.4e-51	175.1	0.0	1.0	1	0	0	1	1	1	1	Survival	protein	SurE
Sec5	PF15469.6	gi|410671539|ref|YP_006923910.1|	-	0.21	11.4	4.5	0.13	12.0	0.6	1.9	1	1	1	2	2	2	0	Exocyst	complex	component	Sec5
PAH	PF02671.21	gi|410671539|ref|YP_006923910.1|	-	0.27	11.4	4.3	1.6	8.9	4.3	2.4	1	1	0	1	1	1	0	Paired	amphipathic	helix	repeat
tRNA-synt_2c	PF01411.19	gi|410671542|ref|YP_006923913.1|	-	8.4e-134	447.1	0.0	1.2e-133	446.6	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
DHHA1	PF02272.19	gi|410671542|ref|YP_006923913.1|	-	5.6e-18	65.7	2.1	1.1e-17	64.7	2.1	1.5	1	0	0	1	1	1	1	DHHA1	domain
tRNA_SAD	PF07973.14	gi|410671542|ref|YP_006923913.1|	-	1.5e-12	47.3	0.5	3.8e-12	46.1	0.5	1.7	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
GvpD	PF07088.11	gi|410671543|ref|YP_006923914.1|	-	1.5e-37	129.4	0.0	5.7e-19	68.1	0.0	3.0	1	1	2	3	3	3	3	GvpD	gas	vesicle	protein
ATPase	PF06745.13	gi|410671543|ref|YP_006923914.1|	-	4.7e-09	35.9	4.9	0.0017	17.7	0.1	3.6	3	1	1	4	4	4	3	KaiC
AAA_22	PF13401.6	gi|410671543|ref|YP_006923914.1|	-	0.0017	18.7	0.0	0.0028	17.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
PAXNEB	PF05625.11	gi|410671543|ref|YP_006923914.1|	-	0.0018	17.5	0.0	0.0035	16.6	0.0	1.4	1	0	0	1	1	1	1	PAXNEB	protein
AAA	PF00004.29	gi|410671543|ref|YP_006923914.1|	-	0.0024	18.3	0.0	0.0057	17.1	0.0	1.8	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|410671543|ref|YP_006923914.1|	-	0.0033	17.8	0.0	0.0049	17.3	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_11	PF13086.6	gi|410671543|ref|YP_006923914.1|	-	0.0058	16.4	0.0	0.0085	15.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|410671543|ref|YP_006923914.1|	-	0.006	16.3	0.2	0.026	14.2	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
DAP3	PF10236.9	gi|410671543|ref|YP_006923914.1|	-	0.014	14.5	0.1	3.2	6.9	0.0	2.3	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
DUF2075	PF09848.9	gi|410671543|ref|YP_006923914.1|	-	0.018	14.3	0.2	0.065	12.5	0.0	1.8	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_14	PF13173.6	gi|410671543|ref|YP_006923914.1|	-	0.054	13.5	0.0	0.1	12.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|410671543|ref|YP_006923914.1|	-	0.061	13.2	0.1	0.18	11.7	0.0	1.7	2	0	0	2	2	2	0	NACHT	domain
Response_reg	PF00072.24	gi|410671544|ref|YP_006923915.1|	-	2.7e-29	101.6	1.1	7e-29	100.3	1.1	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF835	PF05763.12	gi|410671544|ref|YP_006923915.1|	-	0.023	14.4	0.1	0.067	12.9	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF835)
Response_reg	PF00072.24	gi|410671545|ref|YP_006923916.1|	-	3.3e-28	98.1	0.7	3.7e-28	97.9	0.7	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Methyltransf_31	PF13847.6	gi|410671546|ref|YP_006923917.1|	-	1.3e-05	25.0	0.0	2.8e-05	24.0	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|410671546|ref|YP_006923917.1|	-	0.0011	18.6	0.0	0.0017	17.9	0.0	1.5	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_4	PF02390.17	gi|410671546|ref|YP_006923917.1|	-	0.013	15.0	0.0	0.021	14.3	0.0	1.3	1	0	0	1	1	1	0	Putative	methyltransferase
DUF2990	PF11693.8	gi|410671546|ref|YP_006923917.1|	-	0.095	12.9	0.0	0.19	11.9	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2990)
Methyltransf_25	PF13649.6	gi|410671546|ref|YP_006923917.1|	-	0.12	13.1	0.0	0.24	12.1	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|410671546|ref|YP_006923917.1|	-	0.16	11.6	0.0	0.25	11.0	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
Arch_fla_DE	PF04659.13	gi|410671547|ref|YP_006923918.1|	-	2.1e-28	98.1	0.2	8.9e-28	96.0	0.0	2.1	2	0	0	2	2	2	1	Archaeal	flagella	protein
FlaC_arch	PF05377.11	gi|410671547|ref|YP_006923918.1|	-	7.8e-22	77.4	22.9	6.7e-21	74.4	4.1	4.7	3	1	1	4	4	4	2	Flagella	accessory	protein	C	(FlaC)
Sec34	PF04136.15	gi|410671547|ref|YP_006923918.1|	-	0.00075	19.4	6.8	0.19	11.6	0.1	2.6	1	1	0	2	2	2	2	Sec34-like	family
EzrA	PF06160.12	gi|410671547|ref|YP_006923918.1|	-	0.0025	16.1	9.3	0.0025	16.1	9.3	2.6	1	1	2	3	3	3	2	Septation	ring	formation	regulator,	EzrA
DUF1664	PF07889.12	gi|410671547|ref|YP_006923918.1|	-	0.01	15.9	12.8	0.031	14.3	3.4	3.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
BLOC1_2	PF10046.9	gi|410671547|ref|YP_006923918.1|	-	0.016	15.5	10.8	0.32	11.3	2.1	2.9	2	1	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Taxilin	PF09728.9	gi|410671547|ref|YP_006923918.1|	-	0.025	13.8	15.1	0.061	12.5	5.8	2.5	2	1	0	2	2	2	0	Myosin-like	coiled-coil	protein
RmuC	PF02646.16	gi|410671547|ref|YP_006923918.1|	-	0.035	13.3	0.6	0.035	13.3	0.6	2.6	2	1	0	2	2	2	0	RmuC	family
CENP-F_leu_zip	PF10473.9	gi|410671547|ref|YP_006923918.1|	-	0.069	13.2	19.1	0.51	10.4	7.9	2.6	3	0	0	3	3	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
TolA_bind_tri	PF16331.5	gi|410671547|ref|YP_006923918.1|	-	0.074	13.1	10.4	0.32	11.1	0.8	3.1	2	1	1	3	3	3	0	TolA	binding	protein	trimerisation
FemAB	PF02388.16	gi|410671547|ref|YP_006923918.1|	-	0.1	11.4	0.1	0.1	11.4	0.1	1.9	2	1	0	2	2	2	0	FemAB	family
Phe_tRNA-synt_N	PF02912.18	gi|410671547|ref|YP_006923918.1|	-	0.11	12.5	1.6	2.4	8.1	0.1	2.8	2	0	0	2	2	2	0	Aminoacyl	tRNA	synthetase	class	II,	N-terminal	domain
SKA1	PF07160.12	gi|410671547|ref|YP_006923918.1|	-	0.12	12.2	8.2	0.35	10.7	3.1	2.4	2	0	0	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
Med21	PF11221.8	gi|410671547|ref|YP_006923918.1|	-	0.14	12.4	0.3	0.14	12.4	0.3	2.5	1	1	0	3	3	3	0	Subunit	21	of	Mediator	complex
DUF948	PF06103.11	gi|410671547|ref|YP_006923918.1|	-	0.23	11.7	9.5	2.9	8.2	0.7	3.5	2	1	1	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
Laminin_II	PF06009.12	gi|410671547|ref|YP_006923918.1|	-	0.23	11.5	10.2	0.86	9.6	3.0	2.7	3	0	0	3	3	2	0	Laminin	Domain	II
MCPsignal	PF00015.21	gi|410671547|ref|YP_006923918.1|	-	0.25	11.1	10.5	0.57	10.0	3.2	2.5	2	1	0	2	2	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
SOAR	PF16533.5	gi|410671547|ref|YP_006923918.1|	-	0.42	10.6	13.5	1	9.4	0.5	4.5	3	2	0	4	4	4	0	STIM1	Orai1-activating	region
Nup54	PF13874.6	gi|410671547|ref|YP_006923918.1|	-	0.43	10.7	9.2	4.5	7.4	3.8	2.3	2	0	0	2	2	2	0	Nucleoporin	complex	subunit	54
GAS	PF13851.6	gi|410671547|ref|YP_006923918.1|	-	0.52	9.6	14.1	2.3	7.5	5.9	2.2	2	0	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
AAA_13	PF13166.6	gi|410671547|ref|YP_006923918.1|	-	0.54	8.8	12.9	0.97	8.0	11.0	1.9	1	1	0	1	1	1	0	AAA	domain
V_ATPase_I	PF01496.19	gi|410671547|ref|YP_006923918.1|	-	0.59	8.0	14.3	0.041	11.8	6.9	1.9	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
APG17	PF04108.12	gi|410671547|ref|YP_006923918.1|	-	0.63	9.1	12.4	0.8	8.8	2.4	2.2	1	1	1	2	2	2	0	Autophagy	protein	Apg17
DUF4795	PF16043.5	gi|410671547|ref|YP_006923918.1|	-	0.81	9.3	16.2	1.3	8.5	3.1	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4795)
Spc7	PF08317.11	gi|410671547|ref|YP_006923918.1|	-	0.99	8.2	15.7	0.28	10.0	6.3	2.3	2	0	0	2	2	2	0	Spc7	kinetochore	protein
Syntaxin-6_N	PF09177.11	gi|410671547|ref|YP_006923918.1|	-	1	9.9	8.4	0.96	10.0	3.3	2.6	2	0	0	2	2	2	0	Syntaxin	6,	N-terminal
Occludin_ELL	PF07303.13	gi|410671547|ref|YP_006923918.1|	-	1.1	10.0	7.0	20	6.0	1.0	3.2	2	1	0	2	2	2	0	Occludin	homology	domain
DASH_Dad2	PF08654.10	gi|410671547|ref|YP_006923918.1|	-	1.2	9.5	7.4	0.51	10.8	3.8	2.3	2	1	0	2	2	1	0	DASH	complex	subunit	Dad2
DUF4446	PF14584.6	gi|410671547|ref|YP_006923918.1|	-	1.3	9.0	7.7	3.6	7.6	0.2	2.9	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF4446)
Nsp1_C	PF05064.13	gi|410671547|ref|YP_006923918.1|	-	1.6	8.6	12.0	1.3	8.9	1.4	2.7	2	1	0	2	2	2	0	Nsp1-like	C-terminal	region
NPV_P10	PF05531.12	gi|410671547|ref|YP_006923918.1|	-	1.7	9.2	11.5	12	6.4	2.1	3.5	2	1	1	3	3	3	0	Nucleopolyhedrovirus	P10	protein
Prominin	PF05478.11	gi|410671547|ref|YP_006923918.1|	-	2.1	6.2	9.6	0.45	8.4	3.0	1.8	1	1	1	2	2	2	0	Prominin
KxDL	PF10241.9	gi|410671547|ref|YP_006923918.1|	-	2.7	8.3	9.8	17	5.8	0.2	3.7	3	1	1	4	4	4	0	Uncharacterized	conserved	protein
DUF3450	PF11932.8	gi|410671547|ref|YP_006923918.1|	-	5.2	6.3	10.0	4.7	6.4	3.9	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
DUF16	PF01519.16	gi|410671547|ref|YP_006923918.1|	-	5.4	7.6	12.5	6.4	7.3	2.8	2.6	1	1	0	2	2	2	0	Protein	of	unknown	function	DUF16
Enkurin	PF13864.6	gi|410671547|ref|YP_006923918.1|	-	5.7	7.4	7.2	10	6.6	2.4	2.8	2	1	0	2	2	2	0	Calmodulin-binding
CENP-H	PF05837.12	gi|410671547|ref|YP_006923918.1|	-	6.2	7.3	13.1	2	8.8	6.2	2.4	2	0	0	2	2	2	0	Centromere	protein	H	(CENP-H)
XhlA	PF10779.9	gi|410671547|ref|YP_006923918.1|	-	7.4	6.9	17.0	3.4	7.9	0.9	4.0	4	1	0	4	4	3	0	Haemolysin	XhlA
TMPIT	PF07851.13	gi|410671547|ref|YP_006923918.1|	-	7.8	5.6	10.7	4.9	6.3	4.8	2.1	2	0	0	2	2	2	0	TMPIT-like	protein
Arch_flagellin	PF01917.16	gi|410671548|ref|YP_006923919.1|	-	3.1e-08	34.0	1.8	7.4e-08	32.7	1.8	1.6	1	1	0	1	1	1	1	Archaebacterial	flagellin
TarH	PF02203.15	gi|410671548|ref|YP_006923919.1|	-	0.027	14.4	0.1	0.038	13.9	0.1	1.2	1	0	0	1	1	1	0	Tar	ligand	binding	domain	homologue
Ig_GlcNase	PF18368.1	gi|410671548|ref|YP_006923919.1|	-	0.11	12.6	0.0	0.16	12.1	0.0	1.3	1	0	0	1	1	1	0	Exo-beta-D-glucosaminidase	Ig-fold	domain
FixH	PF05751.11	gi|410671548|ref|YP_006923919.1|	-	0.26	11.3	3.5	1.1	9.2	3.4	2.0	1	1	0	1	1	1	0	FixH
Arch_flagellin	PF01917.16	gi|410671549|ref|YP_006923920.1|	-	1.7e-21	77.1	0.1	1.9e-21	76.9	0.1	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
HlyD_2	PF12700.7	gi|410671549|ref|YP_006923920.1|	-	0.12	11.1	0.3	0.15	10.8	0.3	1.1	1	0	0	1	1	1	0	HlyD	family	secretion	protein
ATPase	PF06745.13	gi|410671550|ref|YP_006923921.1|	-	5.7e-15	55.3	0.0	7.5e-15	54.9	0.0	1.0	1	0	0	1	1	1	1	KaiC
AAA_5	PF07728.14	gi|410671550|ref|YP_006923921.1|	-	0.0031	17.5	0.0	0.0049	16.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
DnaB_C	PF03796.15	gi|410671550|ref|YP_006923921.1|	-	0.009	15.4	0.0	0.018	14.4	0.0	1.4	1	1	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
MMR_HSR1	PF01926.23	gi|410671550|ref|YP_006923921.1|	-	0.054	13.6	0.0	0.1	12.7	0.0	1.5	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
NACHT	PF05729.12	gi|410671550|ref|YP_006923921.1|	-	0.076	12.9	0.2	0.27	11.2	0.2	1.9	1	1	0	1	1	1	0	NACHT	domain
SRP54	PF00448.22	gi|410671550|ref|YP_006923921.1|	-	0.084	12.5	0.0	0.17	11.5	0.0	1.5	1	1	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Rad51	PF08423.11	gi|410671550|ref|YP_006923921.1|	-	0.099	11.9	0.3	0.19	11.0	0.1	1.5	2	0	0	2	2	2	0	Rad51
P-mevalo_kinase	PF04275.14	gi|410671550|ref|YP_006923921.1|	-	0.13	12.2	0.1	4	7.4	0.0	2.1	2	0	0	2	2	2	0	Phosphomevalonate	kinase
CbiA	PF01656.23	gi|410671550|ref|YP_006923921.1|	-	0.14	12.2	0.0	0.23	11.5	0.0	1.4	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
KTI12	PF08433.10	gi|410671550|ref|YP_006923921.1|	-	0.18	11.3	0.2	0.39	10.1	0.0	1.5	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
PAXNEB	PF05625.11	gi|410671550|ref|YP_006923921.1|	-	0.21	10.7	1.1	5.5	6.0	0.4	2.1	2	0	0	2	2	2	0	PAXNEB	protein
AAA_28	PF13521.6	gi|410671550|ref|YP_006923921.1|	-	0.23	11.7	0.4	0.38	11.0	0.4	1.3	1	0	0	1	1	1	0	AAA	domain
T2SSE	PF00437.20	gi|410671551|ref|YP_006923922.1|	-	1.6e-40	138.9	0.0	2.2e-40	138.5	0.0	1.1	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.6	gi|410671551|ref|YP_006923922.1|	-	1.2e-05	24.9	0.0	2.5e-05	23.9	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|410671551|ref|YP_006923922.1|	-	0.021	15.2	0.0	0.049	14.0	0.0	1.7	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_7	PF12775.7	gi|410671551|ref|YP_006923922.1|	-	0.04	13.4	0.1	0.11	12.0	0.0	1.7	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
WD40_3	PF15911.5	gi|410671551|ref|YP_006923922.1|	-	0.15	12.1	0.0	0.36	10.9	0.0	1.5	1	0	0	1	1	1	0	WD	domain,	G-beta	repeat
T2SSF	PF00482.23	gi|410671552|ref|YP_006923923.1|	-	1.1e-15	57.7	0.1	2.6e-11	43.5	0.1	3.9	5	0	0	5	5	5	2	Type	II	secretion	system	(T2SS),	protein	F
Iso_dh	PF00180.20	gi|410671553|ref|YP_006923924.1|	-	4.4e-99	331.9	0.0	4.9e-99	331.8	0.0	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
DUF166	PF02593.14	gi|410671553|ref|YP_006923924.1|	-	0.1	12.1	0.4	0.49	9.9	0.1	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function
DUF1685	PF07939.11	gi|410671553|ref|YP_006923924.1|	-	0.2	11.5	0.1	0.66	9.8	0.2	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1685)
Aconitase_C	PF00694.19	gi|410671555|ref|YP_006923926.1|	-	3.1e-18	66.4	0.0	4.4e-18	65.9	0.0	1.2	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
Aconitase_2_N	PF06434.13	gi|410671555|ref|YP_006923926.1|	-	0.0027	17.4	0.0	0.11	12.1	0.0	2.2	1	1	0	1	1	1	1	Aconitate	hydratase	2	N-terminus
AglB_L1	PF18079.1	gi|410671556|ref|YP_006923927.1|	-	3.1e-29	101.1	4.2	6.2e-29	100.1	4.2	1.5	1	0	0	1	1	1	1	Archaeal	glycosylation	protein	B	long	peripheral	domain
STT3	PF02516.14	gi|410671556|ref|YP_006923927.1|	-	3.1e-26	92.4	31.7	4.8e-26	91.7	31.7	1.3	1	0	0	1	1	1	1	Oligosaccharyl	transferase	STT3	subunit
Big_6	PF17936.1	gi|410671556|ref|YP_006923927.1|	-	0.01	16.1	0.9	0.021	15.1	0.9	1.5	1	0	0	1	1	1	0	Bacterial	Ig	domain
Glycos_transf_2	PF00535.26	gi|410671557|ref|YP_006923928.1|	-	1.9e-22	79.9	0.1	2.6e-22	79.4	0.1	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|410671557|ref|YP_006923928.1|	-	2.5e-21	76.7	0.0	3.5e-21	76.2	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|410671557|ref|YP_006923928.1|	-	1.3e-18	67.7	0.0	2e-18	67.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|410671557|ref|YP_006923928.1|	-	7.3e-11	41.8	0.0	2e-10	40.4	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|410671557|ref|YP_006923928.1|	-	1.8e-07	30.9	0.1	2.8e-07	30.3	0.1	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Anp1	PF03452.14	gi|410671557|ref|YP_006923928.1|	-	0.095	12.1	0.0	0.13	11.6	0.0	1.2	1	0	0	1	1	1	0	Anp1
SMK-1	PF04802.15	gi|410671557|ref|YP_006923928.1|	-	0.32	10.8	5.1	1.1	9.0	0.5	2.9	2	1	1	3	3	3	0	Component	of	IIS	longevity	pathway	SMK-1
Capsule_synth	PF05159.14	gi|410671558|ref|YP_006923929.1|	-	3.4e-06	26.7	0.0	5.2e-06	26.1	0.0	1.2	1	0	0	1	1	1	1	Capsule	polysaccharide	biosynthesis	protein
NAGidase	PF07555.13	gi|410671558|ref|YP_006923929.1|	-	0.0035	16.7	0.0	0.0056	16.1	0.0	1.2	1	0	0	1	1	1	1	beta-N-acetylglucosaminidase
Epimerase_2	PF02350.19	gi|410671558|ref|YP_006923929.1|	-	0.0098	14.8	0.0	0.015	14.1	0.0	1.3	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
DKCLD	PF08068.12	gi|410671558|ref|YP_006923929.1|	-	0.12	12.4	0.0	0.31	11.1	0.0	1.6	1	0	0	1	1	1	0	DKCLD	(NUC011)	domain
Methyltransf_23	PF13489.6	gi|410671559|ref|YP_006923930.1|	-	1.2e-24	87.0	0.0	1.6e-24	86.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|410671559|ref|YP_006923930.1|	-	1e-09	38.4	0.1	2.7e-09	37.0	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410671559|ref|YP_006923930.1|	-	2.6e-08	34.4	0.0	4.8e-08	33.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|410671559|ref|YP_006923930.1|	-	7.4e-08	33.1	0.0	1.4e-07	32.1	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_9	PF08003.11	gi|410671559|ref|YP_006923930.1|	-	6.6e-07	28.5	0.0	1.3e-06	27.6	0.0	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
MetW	PF07021.12	gi|410671559|ref|YP_006923930.1|	-	3.3e-05	23.6	0.0	4.9e-05	23.0	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_25	PF13649.6	gi|410671559|ref|YP_006923930.1|	-	0.00066	20.3	0.0	0.0013	19.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
AdoMet_MTase	PF07757.13	gi|410671559|ref|YP_006923930.1|	-	0.0071	16.7	0.3	0.019	15.3	0.1	1.7	1	1	0	1	1	1	1	Predicted	AdoMet-dependent	methyltransferase
DREV	PF05219.12	gi|410671559|ref|YP_006923930.1|	-	0.02	14.0	0.0	0.031	13.4	0.0	1.3	1	0	0	1	1	1	0	DREV	methyltransferase
TraE	PF05309.11	gi|410671559|ref|YP_006923930.1|	-	0.12	11.7	0.1	0.18	11.2	0.1	1.2	1	0	0	1	1	1	0	TraE	protein
NeuB	PF03102.14	gi|410671560|ref|YP_006923931.1|	-	1.9e-93	312.4	0.0	2.3e-93	312.1	0.0	1.1	1	0	0	1	1	1	1	NeuB	family
SAF	PF08666.12	gi|410671560|ref|YP_006923931.1|	-	1.5e-10	41.6	0.0	2.9e-10	40.6	0.0	1.5	1	0	0	1	1	1	1	SAF	domain
TraF	PF13728.6	gi|410671560|ref|YP_006923931.1|	-	0.14	12.0	0.0	0.41	10.4	0.0	1.8	1	1	0	1	1	1	0	F	plasmid	transfer	operon	protein
HAD_2	PF13419.6	gi|410671561|ref|YP_006923932.1|	-	5.4e-18	65.7	0.0	6.8e-18	65.4	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|410671561|ref|YP_006923932.1|	-	2e-10	40.6	0.0	3.2e-10	39.9	0.0	1.2	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.26	gi|410671561|ref|YP_006923932.1|	-	1e-07	32.5	0.0	1.2e-07	32.3	0.0	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
NuiA	PF07924.11	gi|410671561|ref|YP_006923932.1|	-	0.05	14.0	0.1	0.12	12.7	0.0	1.6	1	1	1	2	2	2	0	Nuclease	A	inhibitor-like	protein
NIF	PF03031.18	gi|410671561|ref|YP_006923932.1|	-	0.061	13.1	0.1	0.07	12.9	0.1	1.1	1	0	0	1	1	1	0	NLI	interacting	factor-like	phosphatase
ATPgrasp_Ter	PF15632.6	gi|410671562|ref|YP_006923933.1|	-	4e-18	65.4	0.0	6.9e-18	64.6	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_3	PF02655.14	gi|410671562|ref|YP_006923933.1|	-	1.4e-17	64.2	0.0	2.2e-17	63.6	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_4	PF13535.6	gi|410671562|ref|YP_006923933.1|	-	1.7e-06	27.7	0.4	0.0023	17.5	0.4	3.3	1	1	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|410671562|ref|YP_006923933.1|	-	0.0018	17.8	0.0	0.046	13.2	0.0	2.2	1	1	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp	PF02222.22	gi|410671562|ref|YP_006923933.1|	-	0.0027	17.3	0.0	0.0047	16.5	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
DUF1297	PF06973.12	gi|410671562|ref|YP_006923933.1|	-	0.038	13.5	0.0	1.3	8.6	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1297)
BLACT_WH	PF17778.1	gi|410671562|ref|YP_006923933.1|	-	0.17	11.9	0.0	3.5	7.7	0.0	2.4	2	0	0	2	2	2	0	Beta-lactamase	associated	winged	helix	domain
Epimerase	PF01370.21	gi|410671563|ref|YP_006923934.1|	-	5.4e-29	101.4	0.0	6.5e-29	101.1	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|410671563|ref|YP_006923934.1|	-	4.2e-18	65.8	0.1	7.1e-17	61.8	0.1	2.5	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|410671563|ref|YP_006923934.1|	-	7.6e-09	35.1	0.0	9.3e-09	34.8	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|410671563|ref|YP_006923934.1|	-	7.7e-08	31.7	0.0	1.2e-07	31.1	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|410671563|ref|YP_006923934.1|	-	4.3e-06	26.1	0.0	0.0018	17.5	0.0	3.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.25	gi|410671563|ref|YP_006923934.1|	-	0.002	17.6	0.0	0.0043	16.5	0.0	1.5	2	0	0	2	2	2	1	short	chain	dehydrogenase
CwfJ_C_2	PF04676.14	gi|410671563|ref|YP_006923934.1|	-	0.074	13.9	0.1	0.94	10.4	0.0	2.4	2	0	0	2	2	2	0	Protein	similar	to	CwfJ	C-terminus	2
KR	PF08659.10	gi|410671563|ref|YP_006923934.1|	-	0.11	12.4	0.2	0.26	11.2	0.2	1.5	1	0	0	1	1	1	0	KR	domain
NAD_binding_10	PF13460.6	gi|410671563|ref|YP_006923934.1|	-	0.13	12.1	0.0	15	5.4	0.0	2.3	2	0	0	2	2	2	0	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|410671563|ref|YP_006923934.1|	-	0.16	11.1	0.2	8.5	5.5	0.0	2.1	1	1	0	2	2	2	0	Male	sterility	protein
Acetyltransf_4	PF13420.7	gi|410671564|ref|YP_006923935.1|	-	2.9e-19	69.7	0.3	3.2e-19	69.6	0.3	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|410671564|ref|YP_006923935.1|	-	1.3e-05	25.9	0.0	1.8e-05	25.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|410671564|ref|YP_006923935.1|	-	0.13	12.5	0.0	0.41	10.9	0.0	1.8	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	family
CTP_transf_3	PF02348.19	gi|410671565|ref|YP_006923936.1|	-	5.2e-38	131.2	0.5	6.3e-38	130.9	0.5	1.0	1	0	0	1	1	1	1	Cytidylyltransferase
IspD	PF01128.19	gi|410671565|ref|YP_006923936.1|	-	0.0041	16.9	0.0	0.0065	16.2	0.0	1.3	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
NTP_transf_3	PF12804.7	gi|410671565|ref|YP_006923936.1|	-	0.046	14.1	0.0	0.075	13.4	0.0	1.3	1	0	0	1	1	1	0	MobA-like	NTP	transferase	domain
P2_N	PF18628.1	gi|410671565|ref|YP_006923936.1|	-	0.13	12.0	0.1	0.25	11.1	0.1	1.4	1	0	0	1	1	1	0	Viral	coat	protein	P2	N-terminal	domain
DegT_DnrJ_EryC1	PF01041.17	gi|410671566|ref|YP_006923937.1|	-	8.8e-132	439.8	0.0	1e-131	439.6	0.0	1.0	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_1_2	PF00155.21	gi|410671566|ref|YP_006923937.1|	-	8.3e-12	44.9	0.1	3.4e-11	42.9	0.1	1.8	2	0	0	2	2	2	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.20	gi|410671566|ref|YP_006923937.1|	-	3.9e-10	38.8	0.0	5.6e-10	38.3	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.21	gi|410671566|ref|YP_006923937.1|	-	7.9e-08	31.9	0.0	1.2e-07	31.3	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.19	gi|410671566|ref|YP_006923937.1|	-	0.001	18.1	0.0	0.0014	17.6	0.0	1.3	1	1	0	1	1	1	1	Aminotransferase	class-V
FdtA	PF05523.11	gi|410671567|ref|YP_006923938.1|	-	9.5e-10	38.3	0.2	1.1e-09	38.1	0.2	1.0	1	0	0	1	1	1	1	WxcM-like,	C-terminal
Cupin_2	PF07883.11	gi|410671567|ref|YP_006923938.1|	-	0.00011	21.9	0.0	0.00088	18.9	0.0	2.0	1	1	0	1	1	1	1	Cupin	domain
Polysacc_synt_2	PF02719.15	gi|410671568|ref|YP_006923939.1|	-	1e-101	339.9	0.0	1.2e-101	339.7	0.0	1.0	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
Epimerase	PF01370.21	gi|410671568|ref|YP_006923939.1|	-	1.2e-19	70.7	0.0	1.1e-18	67.6	0.0	2.0	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|410671568|ref|YP_006923939.1|	-	6e-16	58.3	0.1	3.6e-15	55.7	0.1	1.9	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
GDP_Man_Dehyd	PF16363.5	gi|410671568|ref|YP_006923939.1|	-	1.9e-12	47.2	0.0	6e-11	42.3	0.0	2.1	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|410671568|ref|YP_006923939.1|	-	3.7e-08	32.8	0.0	1.4e-06	27.6	0.0	2.2	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.6	gi|410671568|ref|YP_006923939.1|	-	6.3e-07	29.5	0.0	9.3e-07	28.9	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|410671568|ref|YP_006923939.1|	-	1.9e-06	27.2	1.7	0.00069	18.9	0.4	3.0	1	1	1	2	2	2	2	Male	sterility	protein
adh_short	PF00106.25	gi|410671568|ref|YP_006923939.1|	-	0.00015	21.3	0.0	0.00023	20.7	0.0	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|410671568|ref|YP_006923939.1|	-	0.00099	19.4	0.0	0.0049	17.1	0.0	2.0	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
NmrA	PF05368.13	gi|410671568|ref|YP_006923939.1|	-	0.004	16.7	0.0	0.0058	16.2	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
KR	PF08659.10	gi|410671568|ref|YP_006923939.1|	-	0.044	13.7	0.0	0.071	13.0	0.0	1.4	1	0	0	1	1	1	0	KR	domain
BOFC_N	PF08977.10	gi|410671569|ref|YP_006923940.1|	-	0.0054	16.7	0.0	0.13	12.3	0.0	2.4	2	0	0	2	2	2	1	Bypass	of	Forespore	C,	N	terminal
DUF2935	PF11155.8	gi|410671569|ref|YP_006923940.1|	-	0.039	14.3	2.1	0.28	11.5	0.1	2.8	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF2935)
Tnp_22_trimer	PF17489.2	gi|410671569|ref|YP_006923940.1|	-	0.05	13.6	0.0	0.17	11.9	0.0	1.9	1	0	0	1	1	1	0	L1	transposable	element	trimerization	domain
NTP_transf_2	PF01909.23	gi|410671569|ref|YP_006923940.1|	-	0.091	13.1	0.1	1.5	9.1	0.0	2.7	2	0	0	2	2	2	0	Nucleotidyltransferase	domain
GDP_Man_Dehyd	PF16363.5	gi|410671570|ref|YP_006923941.1|	-	1.8e-52	178.8	3.8	3.7e-50	171.2	3.8	2.2	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|410671570|ref|YP_006923941.1|	-	3.7e-33	115.0	0.3	4.7e-33	114.6	0.3	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|410671570|ref|YP_006923941.1|	-	1.1e-05	24.6	0.0	2e-05	23.9	0.0	1.4	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|410671570|ref|YP_006923941.1|	-	0.00028	20.0	0.5	0.01	14.9	0.1	2.1	2	0	0	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|410671570|ref|YP_006923941.1|	-	0.0084	15.3	0.0	0.012	14.7	0.0	1.3	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
YjeF_N	PF03853.15	gi|410671570|ref|YP_006923941.1|	-	0.17	11.8	0.0	1.2	9.0	0.0	2.0	2	0	0	2	2	2	0	YjeF-related	protein	N-terminus
Methyltransf_23	PF13489.6	gi|410671571|ref|YP_006923942.1|	-	1.2e-05	25.2	0.0	2.7e-05	24.1	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|410671571|ref|YP_006923942.1|	-	0.00024	20.9	0.4	0.0063	16.3	0.0	3.1	3	2	0	4	4	4	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|410671571|ref|YP_006923942.1|	-	0.0016	19.2	0.0	0.0052	17.5	0.0	1.9	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410671571|ref|YP_006923942.1|	-	0.0023	18.5	0.0	0.0069	17.0	0.0	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_14	PF08484.11	gi|410671572|ref|YP_006923943.1|	-	4.7e-54	182.5	0.0	6.8e-54	182.0	0.0	1.2	1	0	0	1	1	1	1	C-methyltransferase	C-terminal	domain
Methyltransf_13	PF08421.11	gi|410671572|ref|YP_006923943.1|	-	7.6e-17	61.3	0.0	1.5e-16	60.4	0.0	1.5	1	0	0	1	1	1	1	Putative	zinc	binding	domain
Methyltransf_23	PF13489.6	gi|410671572|ref|YP_006923943.1|	-	2.9e-10	40.2	0.0	4.7e-10	39.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410671572|ref|YP_006923943.1|	-	0.001	19.7	0.0	0.0047	17.6	0.0	2.2	3	0	0	3	3	3	1	Methyltransferase	domain
Polysacc_synt_C	PF14667.6	gi|410671573|ref|YP_006923944.1|	-	5.6e-23	81.6	21.7	5.6e-23	81.6	21.7	4.1	3	2	0	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt	PF01943.17	gi|410671573|ref|YP_006923944.1|	-	1.5e-17	63.8	28.8	1.5e-17	63.8	28.8	2.3	2	1	0	2	2	2	2	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.6	gi|410671573|ref|YP_006923944.1|	-	2.9e-16	59.5	14.4	2.9e-16	59.5	14.4	2.3	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
MurJ	PF03023.14	gi|410671573|ref|YP_006923944.1|	-	1.9e-12	46.5	39.0	1.9e-12	46.5	39.0	1.6	1	1	0	1	1	1	1	Lipid	II	flippase	MurJ
MatE	PF01554.18	gi|410671573|ref|YP_006923944.1|	-	5.7e-10	39.1	7.9	5.7e-10	39.1	7.9	3.9	3	1	0	3	3	3	1	MatE
GDP_Man_Dehyd	PF16363.5	gi|410671574|ref|YP_006923945.1|	-	3.6e-164	546.0	0.0	4.1e-164	545.8	0.0	1.0	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|410671574|ref|YP_006923945.1|	-	2.7e-76	256.2	0.1	3.3e-76	255.9	0.1	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|410671574|ref|YP_006923945.1|	-	2.4e-05	23.6	0.0	4.2e-05	22.8	0.0	1.3	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|410671574|ref|YP_006923945.1|	-	2.6e-05	23.5	0.0	3.8e-05	23.0	0.0	1.2	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
GDP_Man_Dehyd	PF16363.5	gi|410671575|ref|YP_006923946.1|	-	4.7e-59	200.5	0.0	1.7e-58	198.6	0.0	1.7	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|410671575|ref|YP_006923946.1|	-	4.4e-53	180.2	0.0	5.2e-53	180.0	0.0	1.0	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|410671575|ref|YP_006923946.1|	-	8.7e-12	44.6	0.0	1.1e-11	44.3	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|410671575|ref|YP_006923946.1|	-	1.2e-09	37.7	0.0	1.8e-09	37.1	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|410671575|ref|YP_006923946.1|	-	3.7e-09	36.1	0.0	0.00015	21.0	0.0	2.7	2	1	0	2	2	2	2	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|410671575|ref|YP_006923946.1|	-	6.6e-08	32.0	0.0	0.0034	16.6	0.0	2.5	1	1	1	2	2	2	2	Male	sterility	protein
adh_short	PF00106.25	gi|410671575|ref|YP_006923946.1|	-	0.0024	17.4	0.0	0.0037	16.7	0.0	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|410671575|ref|YP_006923946.1|	-	0.013	15.4	0.0	0.087	12.7	0.0	2.0	2	0	0	2	2	2	0	KR	domain
UDPG_MGDP_dh_N	PF03721.14	gi|410671575|ref|YP_006923946.1|	-	0.045	13.3	0.0	0.071	12.7	0.0	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
TrkA_N	PF02254.18	gi|410671575|ref|YP_006923946.1|	-	0.12	12.7	0.0	0.26	11.5	0.0	1.6	1	0	0	1	1	1	0	TrkA-N	domain
NTP_transferase	PF00483.23	gi|410671576|ref|YP_006923947.1|	-	7.9e-35	120.6	0.0	9.7e-35	120.3	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|410671576|ref|YP_006923947.1|	-	1.2e-09	38.7	0.0	1.7e-09	38.2	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|410671576|ref|YP_006923947.1|	-	0.00025	20.8	0.0	0.0004	20.2	0.0	1.3	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Fucokinase	PF07959.12	gi|410671576|ref|YP_006923947.1|	-	0.00038	19.5	1.0	0.00053	19.0	1.0	1.2	1	0	0	1	1	1	1	L-fucokinase
Pro_sub2	PF18513.1	gi|410671576|ref|YP_006923947.1|	-	0.037	14.2	0.1	0.091	12.9	0.1	1.6	1	0	0	1	1	1	0	Prodomain	subtilisin	2
Hexapep	PF00132.24	gi|410671576|ref|YP_006923947.1|	-	0.052	13.3	4.0	4.7	7.1	1.6	3.9	1	1	2	3	3	3	0	Bacterial	transferase	hexapeptide	(six	repeats)
MannoseP_isomer	PF01050.18	gi|410671577|ref|YP_006923948.1|	-	1e-58	197.5	0.5	1.9e-58	196.6	0.2	1.6	2	0	0	2	2	2	1	Mannose-6-phosphate	isomerase
NTP_transferase	PF00483.23	gi|410671577|ref|YP_006923948.1|	-	3.1e-51	174.3	0.0	4.8e-51	173.7	0.0	1.3	1	0	0	1	1	1	1	Nucleotidyl	transferase
Cupin_2	PF07883.11	gi|410671577|ref|YP_006923948.1|	-	6.8e-10	38.5	0.0	1.7e-09	37.2	0.0	1.7	1	0	0	1	1	1	1	Cupin	domain
NTP_transf_3	PF12804.7	gi|410671577|ref|YP_006923948.1|	-	1.7e-07	31.8	0.0	2.6e-07	31.1	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|410671577|ref|YP_006923948.1|	-	0.0055	16.5	0.0	0.012	15.3	0.0	1.5	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Ectoine_synth	PF06339.12	gi|410671577|ref|YP_006923948.1|	-	0.03	14.5	0.0	0.075	13.2	0.0	1.6	2	0	0	2	2	2	0	Ectoine	synthase
DMSP_lyase	PF16867.5	gi|410671577|ref|YP_006923948.1|	-	0.088	12.4	0.2	0.48	10.1	0.1	1.9	2	0	0	2	2	2	0	Dimethlysulfonioproprionate	lyase
OrfB_IS605	PF01385.19	gi|410671578|ref|YP_006923949.1|	-	3e-29	101.7	1.5	5.8e-29	100.8	1.0	1.7	1	1	1	2	2	2	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|410671578|ref|YP_006923949.1|	-	1.3e-22	79.0	1.6	3.5e-22	77.6	1.6	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
OrfB_Zn_ribbon	PF07282.11	gi|410671578|ref|YP_006923949.1|	-	4.3e-20	71.4	0.3	8.6e-20	70.4	0.3	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zinc_ribbon_10	PF10058.9	gi|410671578|ref|YP_006923949.1|	-	0.0067	16.1	1.8	0.036	13.8	2.3	1.9	2	0	0	2	2	2	1	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zf-piccolo	PF05715.13	gi|410671578|ref|YP_006923949.1|	-	0.018	15.1	1.5	0.04	14.1	1.5	1.5	1	0	0	1	1	1	0	Piccolo	Zn-finger
Rep_fac-A_C	PF08646.10	gi|410671578|ref|YP_006923949.1|	-	0.065	13.0	0.1	0.065	13.0	0.1	2.8	4	0	0	4	4	4	0	Replication	factor-A	C	terminal	domain
zf-Sec23_Sec24	PF04810.15	gi|410671578|ref|YP_006923949.1|	-	0.065	13.3	2.3	8.9	6.5	0.3	2.9	2	0	0	2	2	2	0	Sec23/Sec24	zinc	finger
Borrelia_REV	PF03978.13	gi|410671578|ref|YP_006923949.1|	-	0.078	12.9	5.9	1	9.3	0.7	2.4	2	0	0	2	2	2	0	Borrelia	burgdorferi	REV	protein
Nepo_coat_C	PF03688.14	gi|410671578|ref|YP_006923949.1|	-	0.078	12.8	0.2	3.8	7.3	0.0	2.5	2	0	0	2	2	2	0	Nepovirus	coat	protein,	C-terminal	domain
CCDC-167	PF15188.6	gi|410671578|ref|YP_006923949.1|	-	0.38	11.1	4.5	0.46	10.9	2.7	1.9	2	0	0	2	2	2	0	Coiled-coil	domain-containing	protein	167
DHODB_Fe-S_bind	PF10418.9	gi|410671579|ref|YP_006923950.1|	-	8.5e-14	51.1	2.5	1.8e-13	50.1	2.5	1.6	1	0	0	1	1	1	1	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
NAD_binding_1	PF00175.21	gi|410671579|ref|YP_006923950.1|	-	1.1e-06	29.3	0.0	2.4e-06	28.2	0.0	1.6	1	0	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
Fer2_3	PF13085.6	gi|410671579|ref|YP_006923950.1|	-	0.051	13.6	0.7	0.12	12.3	0.3	1.7	2	0	0	2	2	2	0	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_20	PF14691.6	gi|410671580|ref|YP_006923951.1|	-	9.8e-44	147.7	5.4	1.5e-43	147.2	5.4	1.3	1	0	0	1	1	1	1	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Pyr_redox_2	PF07992.14	gi|410671580|ref|YP_006923951.1|	-	2.9e-37	128.5	3.6	4.3e-37	127.9	3.6	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|410671580|ref|YP_006923951.1|	-	5.2e-12	46.2	7.0	9.8e-07	29.3	0.9	3.2	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|410671580|ref|YP_006923951.1|	-	6.4e-11	42.1	3.1	3.2e-05	23.4	0.3	3.6	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|410671580|ref|YP_006923951.1|	-	2.4e-09	36.8	4.0	3.5e-05	23.2	0.8	2.4	2	0	0	2	2	2	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_8	PF13450.6	gi|410671580|ref|YP_006923951.1|	-	4.1e-09	36.6	1.7	4.9e-09	36.3	0.1	1.9	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_7	PF13241.6	gi|410671580|ref|YP_006923951.1|	-	1.8e-08	34.8	0.7	0.0021	18.5	0.1	2.8	2	1	0	2	2	2	2	Putative	NAD(P)-binding
GIDA	PF01134.22	gi|410671580|ref|YP_006923951.1|	-	4.9e-08	32.5	2.9	4.5e-05	22.7	0.1	3.1	3	0	0	3	3	3	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|410671580|ref|YP_006923951.1|	-	1.5e-06	27.8	5.0	9.1e-05	22.0	0.2	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|410671580|ref|YP_006923951.1|	-	9.1e-06	24.6	0.8	9.1e-06	24.6	0.8	2.7	3	0	0	3	3	3	1	HI0933-like	protein
Thi4	PF01946.17	gi|410671580|ref|YP_006923951.1|	-	1.9e-05	24.1	2.1	3.2e-05	23.3	0.1	2.2	2	0	0	2	2	2	1	Thi4	family
FAD_binding_2	PF00890.24	gi|410671580|ref|YP_006923951.1|	-	2.4e-05	23.6	2.7	2.4e-05	23.6	2.7	2.9	3	0	0	3	3	3	1	FAD	binding	domain
DAO	PF01266.24	gi|410671580|ref|YP_006923951.1|	-	8.8e-05	22.2	0.2	8.8e-05	22.2	0.2	2.8	2	1	0	3	3	3	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|410671580|ref|YP_006923951.1|	-	0.00011	21.6	0.9	0.0003	20.2	0.1	1.9	2	0	0	2	2	2	1	FAD	binding	domain
Amino_oxidase	PF01593.24	gi|410671580|ref|YP_006923951.1|	-	0.00025	20.5	2.7	0.0017	17.8	0.4	2.3	2	0	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
Shikimate_DH	PF01488.20	gi|410671580|ref|YP_006923951.1|	-	0.0004	20.5	2.4	0.86	9.7	0.1	4.1	5	0	0	5	5	4	1	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.17	gi|410671580|ref|YP_006923951.1|	-	0.00047	20.7	2.7	0.75	10.4	0.4	3.4	2	1	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
FMO-like	PF00743.19	gi|410671580|ref|YP_006923951.1|	-	0.0022	16.5	0.0	1.1	7.5	0.0	2.2	2	0	0	2	2	2	2	Flavin-binding	monooxygenase-like
UDPG_MGDP_dh_N	PF03721.14	gi|410671580|ref|YP_006923951.1|	-	0.0027	17.3	0.5	0.26	10.9	0.0	3.0	2	1	1	3	3	3	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_9	PF13454.6	gi|410671580|ref|YP_006923951.1|	-	0.0029	17.6	0.6	0.12	12.4	0.4	2.6	2	0	0	2	2	2	1	FAD-NAD(P)-binding
ELFV_dehydrog	PF00208.21	gi|410671580|ref|YP_006923951.1|	-	0.0036	17.1	0.1	0.15	11.7	0.0	2.3	2	0	0	2	2	2	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
K_oxygenase	PF13434.6	gi|410671580|ref|YP_006923951.1|	-	0.0056	15.9	0.1	1.4	8.0	0.0	2.8	3	0	0	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
2-Hacid_dh_C	PF02826.19	gi|410671580|ref|YP_006923951.1|	-	0.011	15.1	0.2	4.9	6.5	0.0	2.4	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|410671580|ref|YP_006923951.1|	-	0.018	14.9	1.3	0.09	12.7	0.1	2.6	3	0	0	3	3	3	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Lycopene_cycl	PF05834.12	gi|410671580|ref|YP_006923951.1|	-	0.028	13.5	0.7	0.028	13.5	0.7	2.3	3	0	0	3	3	2	0	Lycopene	cyclase	protein
TrkA_N	PF02254.18	gi|410671580|ref|YP_006923951.1|	-	0.029	14.6	1.6	5.3	7.3	0.0	3.1	3	0	0	3	3	3	0	TrkA-N	domain
Fer4_7	PF12838.7	gi|410671580|ref|YP_006923951.1|	-	0.037	14.6	0.8	0.037	14.6	0.8	2.5	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
ApbA	PF02558.16	gi|410671580|ref|YP_006923951.1|	-	0.046	13.4	0.1	0.11	12.2	0.1	1.7	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Trp_halogenase	PF04820.14	gi|410671580|ref|YP_006923951.1|	-	0.088	11.6	1.8	0.1	11.4	0.1	1.8	2	0	0	2	2	2	0	Tryptophan	halogenase
Fer4_18	PF13746.6	gi|410671580|ref|YP_006923951.1|	-	0.29	11.3	4.6	0.11	12.7	1.0	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410671580|ref|YP_006923951.1|	-	0.93	9.7	9.6	5.1	7.3	9.6	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410671580|ref|YP_006923951.1|	-	7	7.0	9.3	0.32	11.2	2.7	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
PAPS_reduct	PF01507.19	gi|410671581|ref|YP_006923952.1|	-	2.6e-41	141.6	0.0	3.7e-41	141.1	0.0	1.2	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
Fer4	PF00037.27	gi|410671581|ref|YP_006923952.1|	-	1.1e-06	28.1	3.6	1.1e-06	28.1	3.6	3.7	4	0	0	4	4	4	1	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|410671581|ref|YP_006923952.1|	-	6.5e-06	26.6	9.8	6.5e-06	26.6	9.8	2.6	2	1	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410671581|ref|YP_006923952.1|	-	9.3e-06	25.7	10.0	9.3e-06	25.7	10.0	3.3	3	1	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410671581|ref|YP_006923952.1|	-	0.00026	21.1	0.3	0.00026	21.1	0.3	4.8	5	1	1	6	6	5	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410671581|ref|YP_006923952.1|	-	0.00032	20.7	12.3	0.00032	20.7	12.3	2.9	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410671581|ref|YP_006923952.1|	-	0.00047	20.1	4.1	0.00047	20.1	4.1	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|410671581|ref|YP_006923952.1|	-	0.0011	19.2	2.9	0.0024	18.0	2.9	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410671581|ref|YP_006923952.1|	-	0.0026	17.8	2.7	0.0026	17.8	2.7	3.5	4	0	0	4	4	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|410671581|ref|YP_006923952.1|	-	0.0029	18.5	3.4	0.0029	18.5	3.4	3.6	3	1	1	4	4	3	1	4Fe-4S	double	cluster	binding	domain
Fer4_3	PF12798.7	gi|410671581|ref|YP_006923952.1|	-	0.04	14.8	6.1	0.04	14.8	6.1	4.2	4	0	0	4	4	3	0	4Fe-4S	binding	domain
ATP_bind_3	PF01171.20	gi|410671581|ref|YP_006923952.1|	-	0.053	13.3	0.0	0.096	12.4	0.0	1.4	1	0	0	1	1	1	0	PP-loop	family
PUA	PF01472.20	gi|410671581|ref|YP_006923952.1|	-	0.069	13.1	0.1	0.16	12.0	0.1	1.5	1	0	0	1	1	1	0	PUA	domain
Fer4_8	PF13183.6	gi|410671581|ref|YP_006923952.1|	-	0.52	10.8	22.9	0.074	13.5	1.1	4.3	4	1	1	5	5	3	0	4Fe-4S	dicluster	domain
AI-2E_transport	PF01594.16	gi|410671582|ref|YP_006923953.1|	-	3.4e-32	111.9	41.1	5.5e-32	111.2	41.1	1.3	1	1	0	1	1	1	1	AI-2E	family	transporter
SOP4	PF17081.5	gi|410671582|ref|YP_006923953.1|	-	0.096	12.2	0.1	0.21	11.1	0.1	1.5	1	0	0	1	1	1	0	Suppressor	of	PMA	1-7	protein
TMEM208_SND2	PF05620.11	gi|410671582|ref|YP_006923953.1|	-	1.8	8.3	6.6	10	5.9	0.2	2.9	2	0	0	2	2	2	0	SRP-independent	targeting	protein	2/TMEM208
tRNA-Thr_ED	PF08915.11	gi|410671583|ref|YP_006923954.1|	-	1.5e-51	174.1	0.0	2.9e-51	173.1	0.0	1.5	1	0	0	1	1	1	1	Archaea-specific	editing	domain	of	threonyl-tRNA	synthetase
HGTP_anticodon	PF03129.20	gi|410671583|ref|YP_006923954.1|	-	2.8e-18	65.9	0.8	6e-18	64.8	0.8	1.6	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|410671583|ref|YP_006923954.1|	-	1.8e-15	57.4	0.2	3.3e-15	56.5	0.2	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Acylphosphatase	PF00708.18	gi|410671584|ref|YP_006923955.1|	-	2.7e-23	82.1	0.0	3.1e-23	82.0	0.0	1.0	1	0	0	1	1	1	1	Acylphosphatase
ThiI	PF02568.14	gi|410671585|ref|YP_006923956.1|	-	1.1e-55	188.3	0.0	1.5e-55	187.8	0.0	1.2	1	0	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
THUMP	PF02926.17	gi|410671585|ref|YP_006923956.1|	-	1e-17	64.6	0.0	1.5e-16	60.8	0.0	2.1	2	0	0	2	2	2	1	THUMP	domain
QueC	PF06508.13	gi|410671585|ref|YP_006923956.1|	-	6.8e-05	22.5	0.0	0.034	13.6	0.0	2.5	2	1	0	2	2	2	2	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.16	gi|410671585|ref|YP_006923956.1|	-	0.00048	19.0	0.0	0.001	17.9	0.0	1.5	2	0	0	2	2	2	1	tRNA	methyl	transferase
Arch_fla_DE	PF04659.13	gi|410671587|ref|YP_006923958.1|	-	1.4e-27	95.4	0.1	3e-27	94.3	0.1	1.6	1	0	0	1	1	1	1	Archaeal	flagella	protein
PspA_IM30	PF04012.12	gi|410671587|ref|YP_006923958.1|	-	0.0036	16.9	0.6	0.01	15.5	0.6	1.6	1	1	0	1	1	1	1	PspA/IM30	family
LXG	PF04740.12	gi|410671587|ref|YP_006923958.1|	-	0.0061	16.3	0.6	1.5	8.5	0.0	3.0	3	0	0	3	3	3	1	LXG	domain	of	WXG	superfamily
Laminin_II	PF06009.12	gi|410671587|ref|YP_006923958.1|	-	0.011	15.7	0.7	0.33	10.9	0.4	2.6	1	1	1	2	2	2	0	Laminin	Domain	II
DUF3584	PF12128.8	gi|410671587|ref|YP_006923958.1|	-	0.019	12.5	0.5	0.025	12.1	0.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
FlaC_arch	PF05377.11	gi|410671587|ref|YP_006923958.1|	-	0.022	15.1	7.3	0.028	14.8	0.6	4.0	2	1	2	4	4	4	0	Flagella	accessory	protein	C	(FlaC)
GAS	PF13851.6	gi|410671587|ref|YP_006923958.1|	-	0.032	13.6	0.1	0.14	11.5	0.0	1.9	1	1	1	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
BLOC1_2	PF10046.9	gi|410671587|ref|YP_006923958.1|	-	0.037	14.3	0.2	3.2	8.1	0.1	3.8	3	2	1	4	4	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
HMMR_N	PF15905.5	gi|410671587|ref|YP_006923958.1|	-	0.037	13.5	1.1	0.59	9.6	0.2	2.2	1	1	1	2	2	2	0	Hyaluronan	mediated	motility	receptor	N-terminal
DUF302	PF03625.14	gi|410671587|ref|YP_006923958.1|	-	0.066	13.1	0.1	0.13	12.1	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF302
Baculo_PEP_C	PF04513.12	gi|410671587|ref|YP_006923958.1|	-	0.1	12.6	0.3	0.86	9.6	0.1	2.4	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF1664	PF07889.12	gi|410671587|ref|YP_006923958.1|	-	0.1	12.6	1.1	3.9	7.5	0.1	2.9	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
LPP	PF04728.13	gi|410671587|ref|YP_006923958.1|	-	0.17	12.3	0.3	12	6.4	0.0	3.4	3	1	1	4	4	4	0	Lipoprotein	leucine-zipper
EzrA	PF06160.12	gi|410671587|ref|YP_006923958.1|	-	0.19	9.8	0.3	0.42	8.7	0.1	1.5	1	1	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
ATG16	PF08614.11	gi|410671587|ref|YP_006923958.1|	-	0.25	11.5	1.1	1.7	8.8	0.1	2.2	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
TMF_TATA_bd	PF12325.8	gi|410671587|ref|YP_006923958.1|	-	0.38	11.0	5.1	7.2	6.9	0.0	2.9	1	1	0	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
GPDPase_memb	PF10110.9	gi|410671588|ref|YP_006923959.1|	-	1.1e-05	24.5	15.7	0.00041	19.2	10.5	2.4	1	1	1	2	2	2	2	Membrane	domain	of	glycerophosphoryl	diester	phosphodiesterase
DUF975	PF06161.11	gi|410671588|ref|YP_006923959.1|	-	0.00068	19.5	13.3	0.011	15.6	2.9	2.0	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF975)
Choline_transpo	PF04515.12	gi|410671588|ref|YP_006923959.1|	-	0.15	11.2	10.4	1.3	8.1	4.5	2.1	1	1	1	2	2	2	0	Plasma-membrane	choline	transporter
DUF2070	PF09843.9	gi|410671588|ref|YP_006923959.1|	-	0.49	8.6	14.4	0.67	8.2	14.4	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
Myelin_PLP	PF01275.19	gi|410671588|ref|YP_006923959.1|	-	0.69	9.7	10.1	2.4	8.0	10.1	1.7	1	1	0	1	1	1	0	Myelin	proteolipid	protein	(PLP	or	lipophilin)
DUF3533	PF12051.8	gi|410671588|ref|YP_006923959.1|	-	0.87	8.4	11.8	0.018	14.0	4.5	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3533)
Phage_holin_Dp1	PF16938.5	gi|410671588|ref|YP_006923959.1|	-	8.1	6.7	16.4	1.2	9.4	0.2	3.7	4	1	0	4	4	4	0	Putative	phage	holin	Dp-1
DUF4870	PF09685.10	gi|410671589|ref|YP_006923960.1|	-	3.5e-06	27.1	9.1	4.7e-06	26.7	9.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4870)
TIC20	PF16166.5	gi|410671589|ref|YP_006923960.1|	-	0.011	15.5	4.9	0.015	15.1	4.9	1.2	1	0	0	1	1	1	0	Chloroplast	import	apparatus	Tic20-like
Pox_A14	PF05767.12	gi|410671589|ref|YP_006923960.1|	-	0.038	14.1	4.7	0.06	13.5	4.7	1.3	1	0	0	1	1	1	0	Poxvirus	virion	envelope	protein	A14
DUF4064	PF13273.6	gi|410671589|ref|YP_006923960.1|	-	0.14	12.4	10.6	0.19	12.0	10.2	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4064)
EI24	PF07264.11	gi|410671589|ref|YP_006923960.1|	-	0.77	10.0	13.1	1.3	9.3	13.1	1.5	1	1	0	1	1	1	0	Etoposide-induced	protein	2.4	(EI24)
FA_desaturase	PF00487.24	gi|410671589|ref|YP_006923960.1|	-	1.2	8.9	5.9	1.4	8.7	5.9	1.1	1	0	0	1	1	1	0	Fatty	acid	desaturase
SdpI	PF13630.6	gi|410671589|ref|YP_006923960.1|	-	5.6	7.2	9.3	23	5.2	9.3	1.9	1	1	0	1	1	1	0	SdpI/YhfL	protein	family
Cytochrome-c551	PF10643.9	gi|410671589|ref|YP_006923960.1|	-	5.7	6.5	7.4	5.9	6.4	6.1	1.6	1	1	1	2	2	2	0	Photosystem	P840	reaction-centre	cytochrome	c-551
Pilin_N	PF07790.11	gi|410671590|ref|YP_006923961.1|	-	2.5e-27	95.6	1.4	2.5e-27	95.6	1.4	1.9	2	1	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
Phage_integrase	PF00589.22	gi|410671591|ref|YP_006923962.1|	-	1.8e-16	60.4	0.3	4.7e-13	49.3	0.1	2.5	2	1	0	2	2	2	2	Phage	integrase	family
zinc_ribbon_4	PF13717.6	gi|410671591|ref|YP_006923962.1|	-	0.055	13.4	0.5	0.14	12.1	0.5	1.6	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-Mss51	PF13824.6	gi|410671591|ref|YP_006923962.1|	-	0.062	13.4	0.1	0.13	12.3	0.1	1.6	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Bcr-Abl_Oligo	PF09036.10	gi|410671591|ref|YP_006923962.1|	-	0.11	12.5	0.0	0.25	11.4	0.0	1.5	1	0	0	1	1	1	0	Bcr-Abl	oncoprotein	oligomerisation	domain
RHH_1	PF01402.21	gi|410671592|ref|YP_006923963.1|	-	0.0023	17.8	0.0	0.0028	17.5	0.0	1.1	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RPAP3_C	PF13877.6	gi|410671594|ref|YP_006923965.1|	-	0.13	12.8	4.2	0.36	11.4	0.1	3.7	5	1	0	5	5	5	0	Potential	Monad-binding	region	of	RPAP3
AATF-Che1	PF13339.6	gi|410671595|ref|YP_006923966.1|	-	0.048	14.3	1.1	0.089	13.5	1.1	1.4	1	0	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
MHC2-interact	PF09307.10	gi|410671595|ref|YP_006923966.1|	-	0.061	13.3	0.1	0.13	12.3	0.1	1.5	1	0	0	1	1	1	0	CLIP,	MHC2	interacting
MarR_2	PF12802.7	gi|410671598|ref|YP_006923969.1|	-	5.9e-05	22.9	0.0	0.00012	21.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|410671598|ref|YP_006923969.1|	-	0.00096	19.0	0.0	0.0018	18.2	0.0	1.5	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|410671598|ref|YP_006923969.1|	-	0.0016	18.3	0.1	0.0064	16.4	0.0	2.0	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MRNIP	PF15749.5	gi|410671598|ref|YP_006923969.1|	-	0.0056	17.4	1.5	0.011	16.4	1.5	1.5	1	0	0	1	1	1	1	MRN-interacting	protein
TF_Zn_Ribbon	PF08271.12	gi|410671598|ref|YP_006923969.1|	-	0.0084	15.6	0.2	0.024	14.2	0.2	1.8	1	0	0	1	1	1	1	TFIIB	zinc-binding
IBD	PF10416.9	gi|410671598|ref|YP_006923969.1|	-	0.02	14.9	1.0	0.16	12.0	0.0	2.4	2	1	0	2	2	2	0	Transcription-initiator	DNA-binding	domain	IBD
RNA_pol_Rpb4	PF03874.16	gi|410671598|ref|YP_006923969.1|	-	0.034	14.5	0.3	0.064	13.6	0.3	1.5	1	0	0	1	1	1	0	RNA	polymerase	Rpb4
zf-Mss51	PF13824.6	gi|410671598|ref|YP_006923969.1|	-	0.063	13.4	0.3	0.15	12.2	0.3	1.7	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF1878	PF08963.10	gi|410671598|ref|YP_006923969.1|	-	0.097	13.2	0.3	0.5	10.9	0.2	2.2	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF1878)
DUF2190	PF09956.9	gi|410671598|ref|YP_006923969.1|	-	0.2	12.2	0.0	0.34	11.4	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2190)
Zn_Tnp_IS1595	PF12760.7	gi|410671598|ref|YP_006923969.1|	-	0.47	10.5	4.9	0.34	10.9	2.6	2.0	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
dTDP_sugar_isom	PF00908.17	gi|410671600|ref|YP_006923971.1|	-	6.6e-73	243.9	0.0	7.4e-73	243.8	0.0	1.0	1	0	0	1	1	1	1	dTDP-4-dehydrorhamnose	3,5-epimerase
GDP_Man_Dehyd	PF16363.5	gi|410671601|ref|YP_006923972.1|	-	4.5e-79	266.2	0.0	5.2e-79	266.1	0.0	1.0	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|410671601|ref|YP_006923972.1|	-	2.7e-63	213.6	0.0	3.4e-63	213.3	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|410671601|ref|YP_006923972.1|	-	8.1e-24	84.1	0.0	1.3e-23	83.4	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|410671601|ref|YP_006923972.1|	-	8.9e-22	77.6	0.0	1.1e-20	74.0	0.0	1.9	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.17	gi|410671601|ref|YP_006923972.1|	-	2.6e-15	56.3	0.0	4.7e-14	52.2	0.0	2.0	2	0	0	2	2	2	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|410671601|ref|YP_006923972.1|	-	8.7e-14	51.3	0.2	6e-12	45.3	0.2	2.4	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|410671601|ref|YP_006923972.1|	-	2.6e-07	30.7	0.0	3.4e-07	30.3	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|410671601|ref|YP_006923972.1|	-	3.8e-05	23.4	0.0	6.8e-05	22.5	0.0	1.5	1	0	0	1	1	1	1	NmrA-like	family
adh_short	PF00106.25	gi|410671601|ref|YP_006923972.1|	-	0.017	14.6	0.1	0.11	12.0	0.1	1.9	1	1	0	1	1	1	0	short	chain	dehydrogenase
KR	PF08659.10	gi|410671601|ref|YP_006923972.1|	-	0.021	14.7	0.0	0.044	13.7	0.0	1.5	1	1	0	1	1	1	0	KR	domain
RmlD_sub_bind	PF04321.17	gi|410671602|ref|YP_006923973.1|	-	5.9e-88	294.7	0.0	6.8e-88	294.5	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Epimerase	PF01370.21	gi|410671602|ref|YP_006923973.1|	-	9.4e-16	58.0	0.1	2.6e-15	56.5	0.1	1.7	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|410671602|ref|YP_006923973.1|	-	7e-11	42.1	0.0	1e-10	41.6	0.0	1.2	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|410671602|ref|YP_006923973.1|	-	9.8e-07	28.2	0.9	7.7e-05	22.0	0.1	3.0	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|410671602|ref|YP_006923973.1|	-	0.0012	18.0	0.0	0.004	16.3	0.0	1.7	1	1	0	1	1	1	1	Male	sterility	protein
NTP_transferase	PF00483.23	gi|410671603|ref|YP_006923974.1|	-	2e-56	191.4	0.0	2.2e-56	191.2	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|410671603|ref|YP_006923974.1|	-	9.3e-14	52.1	0.0	1.1e-13	51.9	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|410671603|ref|YP_006923974.1|	-	0.024	14.4	0.0	0.1	12.3	0.0	1.9	1	1	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CTP_transf_3	PF02348.19	gi|410671603|ref|YP_006923974.1|	-	0.045	13.7	0.0	0.12	12.3	0.0	1.6	2	0	0	2	2	2	0	Cytidylyltransferase
Polysacc_synt	PF01943.17	gi|410671604|ref|YP_006923975.1|	-	6.6e-14	51.9	30.3	6.6e-14	51.9	30.3	2.1	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.6	gi|410671604|ref|YP_006923975.1|	-	1.1e-10	41.2	21.3	1.1e-10	41.2	21.3	1.9	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
MatE	PF01554.18	gi|410671604|ref|YP_006923975.1|	-	5.5e-06	26.1	9.7	5.5e-06	26.1	9.7	3.8	4	1	0	4	4	4	2	MatE
Polysacc_synt_C	PF14667.6	gi|410671604|ref|YP_006923975.1|	-	0.0074	16.4	52.8	0.011	15.8	10.6	4.2	3	1	0	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
MerC	PF03203.14	gi|410671605|ref|YP_006923976.1|	-	7.7	7.0	14.9	0.65	10.5	3.6	3.4	2	2	0	2	2	2	0	MerC	mercury	resistance	protein
Hexapep	PF00132.24	gi|410671606|ref|YP_006923977.1|	-	1.8e-10	40.1	16.5	1.5e-09	37.1	5.0	2.8	3	0	0	3	3	3	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|410671606|ref|YP_006923977.1|	-	0.00013	21.6	14.2	0.002	17.8	5.1	3.6	3	1	1	4	4	4	2	Hexapeptide	repeat	of	succinyl-transferase
Polbeta	PF18765.1	gi|410671607|ref|YP_006923978.1|	-	3.8e-06	26.9	0.0	6.5e-06	26.1	0.0	1.4	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
DAGK_prokar	PF01219.19	gi|410671607|ref|YP_006923978.1|	-	0.055	13.3	0.8	0.096	12.5	0.8	1.4	1	0	0	1	1	1	0	Prokaryotic	diacylglycerol	kinase
Thymidylate_kin	PF02223.17	gi|410671608|ref|YP_006923979.1|	-	1.1e-07	31.8	1.6	3.2e-05	23.7	0.2	2.2	2	0	0	2	2	2	2	Thymidylate	kinase
NTPase_1	PF03266.15	gi|410671608|ref|YP_006923979.1|	-	0.00054	19.9	0.1	0.001	19.0	0.1	1.4	1	0	0	1	1	1	1	NTPase
AAA_18	PF13238.6	gi|410671608|ref|YP_006923979.1|	-	0.0014	19.1	0.1	0.003	18.1	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|410671608|ref|YP_006923979.1|	-	0.0033	17.8	0.0	0.0039	17.6	0.0	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
MeaB	PF03308.16	gi|410671608|ref|YP_006923979.1|	-	0.0056	15.7	0.0	0.014	14.4	0.0	1.5	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_22	PF13401.6	gi|410671608|ref|YP_006923979.1|	-	0.015	15.5	0.0	0.029	14.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
MobB	PF03205.14	gi|410671608|ref|YP_006923979.1|	-	0.018	14.9	0.0	0.034	14.0	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SRP54	PF00448.22	gi|410671608|ref|YP_006923979.1|	-	0.029	14.0	0.1	0.086	12.5	0.1	1.7	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_14	PF13173.6	gi|410671608|ref|YP_006923979.1|	-	0.057	13.5	0.6	0.44	10.6	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
ATP_bind_1	PF03029.17	gi|410671608|ref|YP_006923979.1|	-	0.059	13.2	0.0	0.1	12.4	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
RNA_helicase	PF00910.22	gi|410671608|ref|YP_006923979.1|	-	0.071	13.5	0.0	1.4	9.3	0.0	2.3	2	0	0	2	2	2	0	RNA	helicase
AAA_28	PF13521.6	gi|410671608|ref|YP_006923979.1|	-	0.073	13.3	0.4	0.48	10.7	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
NACHT	PF05729.12	gi|410671608|ref|YP_006923979.1|	-	0.15	12.0	0.0	0.24	11.3	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
Glycos_transf_1	PF00534.20	gi|410671609|ref|YP_006923980.1|	-	2.7e-21	75.8	0.0	5.7e-21	74.8	0.0	1.5	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|410671609|ref|YP_006923980.1|	-	1.5e-20	74.0	0.0	2.4e-20	73.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|410671609|ref|YP_006923980.1|	-	1.3e-05	25.2	0.0	2.8e-05	24.2	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_2	PF13477.6	gi|410671609|ref|YP_006923980.1|	-	0.0082	16.2	0.1	0.032	14.2	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	4-like
Glyco_trans_1_2	PF13524.6	gi|410671609|ref|YP_006923980.1|	-	0.0091	16.4	0.0	0.023	15.1	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|410671610|ref|YP_006923981.1|	-	2.3e-40	137.9	0.0	4.4e-40	137.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|410671610|ref|YP_006923981.1|	-	4.8e-30	104.7	0.0	9.6e-30	103.8	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|410671610|ref|YP_006923981.1|	-	8e-27	94.3	0.1	1.3e-26	93.7	0.1	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|410671610|ref|YP_006923981.1|	-	7.1e-15	55.8	0.0	1e-14	55.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|410671610|ref|YP_006923981.1|	-	2.6e-08	34.1	0.0	5.5e-08	33.1	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|410671610|ref|YP_006923981.1|	-	2.7e-08	33.9	0.7	6.4e-08	32.7	0.5	1.7	1	1	1	2	2	2	1	Glycosyl	transferase	4-like
Glyco_transf_5	PF08323.11	gi|410671610|ref|YP_006923981.1|	-	0.0034	17.1	0.0	3.6	7.2	0.0	3.0	1	1	2	3	3	3	2	Starch	synthase	catalytic	domain
PP-binding_2	PF14573.6	gi|410671610|ref|YP_006923981.1|	-	0.042	14.1	0.0	0.2	11.9	0.0	2.1	2	0	0	2	2	2	0	Acyl-carrier
Glyco_tran_28_C	PF04101.16	gi|410671611|ref|YP_006923982.1|	-	9.3e-21	74.5	0.1	1.1e-20	74.3	0.1	1.1	1	0	0	1	1	1	1	Glycosyltransferase	family	28	C-terminal	domain
Alpha-amyl_C2	PF07821.12	gi|410671611|ref|YP_006923982.1|	-	0.032	14.4	0.0	0.075	13.3	0.0	1.6	1	0	0	1	1	1	0	Alpha-amylase	C-terminal	beta-sheet	domain
Alg14	PF08660.11	gi|410671612|ref|YP_006923983.1|	-	9.3e-19	68.0	0.0	1.1e-18	67.8	0.0	1.2	1	0	0	1	1	1	1	Oligosaccharide	biosynthesis	protein	Alg14	like
Glyco_transf_28	PF03033.20	gi|410671612|ref|YP_006923983.1|	-	0.00013	22.0	0.0	0.00018	21.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	family	28	N-terminal	domain
PIGA	PF08288.12	gi|410671612|ref|YP_006923983.1|	-	0.15	12.6	0.0	0.23	12.1	0.0	1.3	1	0	0	1	1	1	0	PIGA	(GPI	anchor	biosynthesis)
Glycos_transf_2	PF00535.26	gi|410671613|ref|YP_006923984.1|	-	7.3e-30	104.0	0.0	1.1e-29	103.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|410671613|ref|YP_006923984.1|	-	3.2e-24	86.1	0.0	5e-24	85.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|410671613|ref|YP_006923984.1|	-	1.9e-08	34.4	0.1	3.2e-08	33.7	0.1	1.3	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_2	PF10111.9	gi|410671613|ref|YP_006923984.1|	-	9.3e-07	28.6	0.0	1.6e-06	27.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|410671613|ref|YP_006923984.1|	-	2.4e-06	27.2	0.0	3.6e-06	26.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_transf_7C	PF02709.14	gi|410671613|ref|YP_006923984.1|	-	0.00059	19.4	0.0	0.0012	18.5	0.0	1.5	1	0	0	1	1	1	1	N-terminal	domain	of	galactosyltransferase
Glycos_transf_2	PF00535.26	gi|410671614|ref|YP_006923985.1|	-	1.9e-20	73.4	0.0	2.7e-20	72.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_4	PF13704.6	gi|410671614|ref|YP_006923985.1|	-	3.1e-05	24.4	0.0	5.4e-05	23.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|410671614|ref|YP_006923985.1|	-	5.3e-05	23.2	0.0	8.2e-05	22.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
DUF374	PF04028.13	gi|410671614|ref|YP_006923985.1|	-	0.069	12.7	0.0	0.21	11.2	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF374)
DUF373	PF04123.13	gi|410671614|ref|YP_006923985.1|	-	3.1	7.1	5.5	0.67	9.3	1.9	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF373)
YdjM	PF04307.14	gi|410671615|ref|YP_006923986.1|	-	9e-12	44.6	2.6	1e-11	44.5	2.6	1.2	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
NCE101	PF11654.8	gi|410671615|ref|YP_006923986.1|	-	0.11	12.3	0.1	0.26	11.0	0.1	1.7	1	0	0	1	1	1	0	Non-classical	export	protein	1
Phage_integrase	PF00589.22	gi|410671616|ref|YP_006923987.1|	-	1.2e-28	100.0	0.1	1.4e-28	99.8	0.1	1.0	1	0	0	1	1	1	1	Phage	integrase	family
DUF1027	PF06265.11	gi|410671617|ref|YP_006923988.1|	-	0.053	13.5	0.5	0.84	9.7	0.5	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1027)
Adaptin_N	PF01602.20	gi|410671620|ref|YP_006923991.1|	-	0.00069	18.3	0.1	0.00069	18.3	0.1	1.0	1	0	0	1	1	1	1	Adaptin	N	terminal	region
TEX15	PF15326.6	gi|410671620|ref|YP_006923991.1|	-	0.015	15.0	0.1	0.016	14.9	0.1	1.1	1	0	0	1	1	1	0	Testis	expressed	sequence	15
DUF1947	PF09183.10	gi|410671622|ref|YP_006923993.1|	-	0.36	11.1	2.1	16	5.8	0.2	3.1	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1947)
DDE_3	PF13358.6	gi|410671623|ref|YP_006923994.1|	-	4e-25	88.3	0.7	1.2e-24	86.7	0.1	2.0	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|410671623|ref|YP_006923994.1|	-	2.8e-12	47.1	0.0	6.8e-12	45.8	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|410671623|ref|YP_006923994.1|	-	3e-08	33.6	0.0	6.6e-08	32.5	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_33	PF13592.6	gi|410671623|ref|YP_006923994.1|	-	4.7e-08	32.6	0.0	1.7e-07	30.8	0.0	2.0	2	0	0	2	2	2	1	Winged	helix-turn	helix
DDE_1	PF03184.19	gi|410671623|ref|YP_006923994.1|	-	4.8e-07	29.6	0.3	4.8e-07	29.6	0.3	1.8	2	1	0	2	2	2	1	DDE	superfamily	endonuclease
HTH_23	PF13384.6	gi|410671623|ref|YP_006923994.1|	-	4.5e-06	26.3	0.1	1.6e-05	24.5	0.0	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
rve	PF00665.26	gi|410671623|ref|YP_006923994.1|	-	5.7e-05	23.3	0.0	0.00011	22.4	0.0	1.4	1	0	0	1	1	1	1	Integrase	core	domain
HTH_28	PF13518.6	gi|410671623|ref|YP_006923994.1|	-	0.0028	17.7	0.0	0.006	16.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_ABP1_N	PF18107.1	gi|410671623|ref|YP_006923994.1|	-	0.0083	15.8	0.1	0.018	14.8	0.1	1.5	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
DDE_Tnp_ISAZ013	PF07592.11	gi|410671623|ref|YP_006923994.1|	-	0.021	13.8	0.3	0.052	12.5	0.1	1.7	2	0	0	2	2	2	0	Rhodopirellula	transposase	DDE	domain
Pilin_N	PF07790.11	gi|410671627|ref|YP_006923998.1|	-	7.4e-25	87.7	4.3	1.3e-24	86.9	4.2	1.5	1	1	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
Flp1_like	PF16982.5	gi|410671627|ref|YP_006923998.1|	-	0.049	13.0	2.4	0.095	12.1	2.4	1.5	1	0	0	1	1	1	0	Putative	Flagellin,	Flp1-like,	domain
DUF5371	PF17341.2	gi|410671628|ref|YP_006923999.1|	-	2.9e-39	133.1	8.6	3.3e-39	132.9	8.6	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5371)
ACT_6	PF13740.6	gi|410671631|ref|YP_006924002.1|	-	3.4e-16	59.0	0.3	3.8e-16	58.8	0.3	1.0	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.25	gi|410671631|ref|YP_006924002.1|	-	3.4e-08	33.1	0.4	4.5e-08	32.7	0.4	1.3	1	0	0	1	1	1	1	ACT	domain
ACT_4	PF13291.6	gi|410671631|ref|YP_006924002.1|	-	0.00016	22.2	2.1	0.00033	21.2	1.7	1.7	1	1	0	2	2	2	1	ACT	domain
ACT_7	PF13840.6	gi|410671631|ref|YP_006924002.1|	-	0.0086	15.9	0.4	0.012	15.4	0.4	1.3	1	0	0	1	1	1	1	ACT	domain
DUF711	PF05167.12	gi|410671632|ref|YP_006924003.1|	-	2.1e-181	603.2	7.1	2.6e-181	603.0	7.1	1.0	1	0	0	1	1	1	1	Uncharacterised	ACR	(DUF711)
SKI	PF01202.22	gi|410671633|ref|YP_006924004.1|	-	3.5e-31	108.5	0.0	3.9e-31	108.3	0.0	1.0	1	0	0	1	1	1	1	Shikimate	kinase
AAA_18	PF13238.6	gi|410671633|ref|YP_006924004.1|	-	2.1e-07	31.5	0.0	6.4e-07	30.0	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|410671633|ref|YP_006924004.1|	-	8.5e-07	29.5	0.1	3.6e-06	27.4	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|410671633|ref|YP_006924004.1|	-	8e-06	26.1	0.0	2.3e-05	24.6	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|410671633|ref|YP_006924004.1|	-	2.4e-05	24.2	0.2	8.4e-05	22.4	0.1	1.8	1	1	1	2	2	2	1	Cytidylate	kinase
Cytidylate_kin2	PF13189.6	gi|410671633|ref|YP_006924004.1|	-	7.2e-05	23.0	0.2	0.00035	20.8	0.2	2.0	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
ADK	PF00406.22	gi|410671633|ref|YP_006924004.1|	-	0.00039	20.5	0.1	0.36	10.9	0.0	2.2	2	0	0	2	2	2	2	Adenylate	kinase
dNK	PF01712.19	gi|410671633|ref|YP_006924004.1|	-	0.007	16.3	0.0	1.8	8.4	0.0	2.1	2	0	0	2	2	2	2	Deoxynucleoside	kinase
CoaE	PF01121.20	gi|410671633|ref|YP_006924004.1|	-	0.018	14.7	0.3	0.036	13.7	0.2	1.6	2	0	0	2	2	2	0	Dephospho-CoA	kinase
AAA	PF00004.29	gi|410671633|ref|YP_006924004.1|	-	0.026	15.0	0.0	0.04	14.3	0.0	1.6	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|410671633|ref|YP_006924004.1|	-	0.026	14.9	0.0	0.035	14.5	0.0	1.3	1	1	0	1	1	1	0	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|410671633|ref|YP_006924004.1|	-	0.047	13.8	0.2	0.24	11.5	0.2	2.2	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_22	PF13401.6	gi|410671633|ref|YP_006924004.1|	-	0.1	12.9	0.1	0.16	12.2	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
6PF2K	PF01591.18	gi|410671633|ref|YP_006924004.1|	-	0.11	11.8	0.0	0.16	11.2	0.0	1.4	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
TrmO	PF01980.16	gi|410671635|ref|YP_006924006.1|	-	1.9e-29	102.3	0.0	2.2e-29	102.1	0.0	1.0	1	0	0	1	1	1	1	tRNA-methyltransferase	O
ABC_tran	PF00005.27	gi|410671636|ref|YP_006924007.1|	-	3.4e-30	105.3	0.0	4.6e-30	104.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|410671636|ref|YP_006924007.1|	-	1.1e-09	38.6	1.6	0.00057	19.8	0.1	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|410671636|ref|YP_006924007.1|	-	8.7e-06	26.4	0.1	1.2e-05	26.0	0.1	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|410671636|ref|YP_006924007.1|	-	5.7e-05	22.8	0.0	0.00013	21.6	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|410671636|ref|YP_006924007.1|	-	6.8e-05	22.7	0.1	0.00053	19.8	0.1	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|410671636|ref|YP_006924007.1|	-	0.00019	21.4	0.0	0.00039	20.4	0.0	1.6	1	0	0	1	1	1	1	RsgA	GTPase
SMC_N	PF02463.19	gi|410671636|ref|YP_006924007.1|	-	0.0002	20.9	0.3	0.24	10.8	0.0	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|410671636|ref|YP_006924007.1|	-	0.0004	20.8	0.0	0.00046	20.6	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|410671636|ref|YP_006924007.1|	-	0.00076	19.8	0.9	0.0097	16.2	0.9	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_14	PF13173.6	gi|410671636|ref|YP_006924007.1|	-	0.001	19.1	0.1	0.023	14.7	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
AAA_24	PF13479.6	gi|410671636|ref|YP_006924007.1|	-	0.0053	16.5	0.0	0.0078	16.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
ABC_ATPase	PF09818.9	gi|410671636|ref|YP_006924007.1|	-	0.0062	15.4	0.1	5.7	5.6	0.0	3.0	2	1	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
Rad17	PF03215.15	gi|410671636|ref|YP_006924007.1|	-	0.014	15.3	0.5	0.044	13.7	0.1	1.8	2	0	0	2	2	2	0	Rad17	P-loop	domain
ATPase_2	PF01637.18	gi|410671636|ref|YP_006924007.1|	-	0.015	15.2	0.1	0.035	14.0	0.0	1.6	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_30	PF13604.6	gi|410671636|ref|YP_006924007.1|	-	0.017	14.8	0.0	0.042	13.6	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|410671636|ref|YP_006924007.1|	-	0.029	13.7	0.0	0.058	12.8	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_19	PF13245.6	gi|410671636|ref|YP_006924007.1|	-	0.033	14.5	1.0	0.22	11.8	1.0	2.3	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|410671636|ref|YP_006924007.1|	-	0.037	13.7	0.1	0.087	12.4	0.0	1.6	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
HSM3_N	PF18795.1	gi|410671636|ref|YP_006924007.1|	-	0.04	13.4	0.3	0.04	13.4	0.3	1.8	2	0	0	2	2	2	0	DNA	mismatch	repair	protein	HSM3,	N	terminal	domain
NB-ARC	PF00931.22	gi|410671636|ref|YP_006924007.1|	-	0.051	12.8	0.2	0.22	10.7	0.0	2.0	2	1	0	2	2	2	0	NB-ARC	domain
IstB_IS21	PF01695.17	gi|410671636|ref|YP_006924007.1|	-	0.059	13.1	0.4	0.18	11.5	0.0	2.0	2	1	0	2	2	2	0	IstB-like	ATP	binding	protein
TniB	PF05621.11	gi|410671636|ref|YP_006924007.1|	-	0.064	12.7	1.1	2.1	7.7	0.3	2.1	2	0	0	2	2	2	0	Bacterial	TniB	protein
AAA_5	PF07728.14	gi|410671636|ref|YP_006924007.1|	-	0.069	13.1	0.1	0.64	10.0	0.0	2.2	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
PhoH	PF02562.16	gi|410671636|ref|YP_006924007.1|	-	0.078	12.4	0.1	0.24	10.8	0.0	1.7	2	0	0	2	2	2	0	PhoH-like	protein
NACHT	PF05729.12	gi|410671636|ref|YP_006924007.1|	-	0.13	12.2	0.1	0.26	11.2	0.1	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_27	PF13514.6	gi|410671636|ref|YP_006924007.1|	-	0.15	11.6	0.0	0.26	10.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
FecCD	PF01032.18	gi|410671637|ref|YP_006924008.1|	-	9.2e-92	307.4	32.3	1.1e-91	307.1	32.3	1.0	1	0	0	1	1	1	1	FecCD	transport	family
DUF3796	PF12676.7	gi|410671637|ref|YP_006924008.1|	-	1.6	9.2	6.5	19	5.7	1.8	3.1	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3796)
Peripla_BP_2	PF01497.18	gi|410671638|ref|YP_006924009.1|	-	4.8e-21	75.4	0.0	6.1e-21	75.1	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
S-layer	PF07752.11	gi|410671639|ref|YP_006924010.1|	-	8.9e-12	44.6	0.0	1.1e-11	44.3	0.0	1.1	1	0	0	1	1	1	1	S-layer	protein
S-layer	PF07752.11	gi|410671640|ref|YP_006924011.1|	-	8.2e-23	80.8	2.6	1.5e-21	76.7	2.6	2.0	1	1	0	1	1	1	1	S-layer	protein
FmdE	PF02663.14	gi|410671642|ref|YP_006924013.1|	-	7.8e-41	139.2	0.1	1e-40	138.9	0.1	1.1	1	0	0	1	1	1	1	FmdE,	Molybdenum	formylmethanofuran	dehydrogenase	operon
zf-dskA_traR	PF01258.17	gi|410671642|ref|YP_006924013.1|	-	1.1e-08	34.9	0.9	3.7e-08	33.2	1.1	1.8	2	0	0	2	2	2	1	Prokaryotic	dksA/traR	C4-type	zinc	finger
OrfB_Zn_ribbon	PF07282.11	gi|410671642|ref|YP_006924013.1|	-	0.0073	16.2	1.0	0.021	14.7	0.2	2.1	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
LIM	PF00412.22	gi|410671642|ref|YP_006924013.1|	-	0.022	15.0	0.8	0.042	14.1	0.8	1.5	1	0	0	1	1	1	0	LIM	domain
Cauli_AT	PF03233.13	gi|410671642|ref|YP_006924013.1|	-	0.068	13.1	0.0	0.1	12.5	0.0	1.2	1	0	0	1	1	1	0	Aphid	transmission	protein
Kinocilin	PF15033.6	gi|410671642|ref|YP_006924013.1|	-	0.17	11.5	0.0	0.3	10.7	0.0	1.3	1	0	0	1	1	1	0	Kinocilin	protein
DUF2284	PF10050.9	gi|410671643|ref|YP_006924014.1|	-	4.1e-47	160.0	0.0	5.1e-47	159.7	0.0	1.1	1	0	0	1	1	1	1	Predicted	metal-binding	protein	(DUF2284)
T4_deiodinase	PF00837.17	gi|410671643|ref|YP_006924014.1|	-	0.0045	16.3	0.0	0.007	15.7	0.0	1.2	1	0	0	1	1	1	1	Iodothyronine	deiodinase
CLPTM1	PF05602.12	gi|410671644|ref|YP_006924015.1|	-	0.099	11.6	0.6	0.098	11.7	0.6	1.0	1	0	0	1	1	1	0	Cleft	lip	and	palate	transmembrane	protein	1	(CLPTM1)
AAA	PF00004.29	gi|410671645|ref|YP_006924016.1|	-	9.4e-44	149.0	0.7	2.8e-43	147.5	0.0	2.1	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|410671645|ref|YP_006924016.1|	-	3.5e-12	45.9	0.2	1.1e-11	44.4	0.2	1.9	1	0	0	1	1	1	1	AAA+	lid	domain
AAA_16	PF13191.6	gi|410671645|ref|YP_006924016.1|	-	1.1e-05	25.9	0.4	0.00088	19.7	0.0	2.6	2	1	1	3	3	2	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|410671645|ref|YP_006924016.1|	-	2.2e-05	24.5	0.1	7.1e-05	22.8	0.1	1.9	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
RuvB_N	PF05496.12	gi|410671645|ref|YP_006924016.1|	-	5e-05	23.1	0.1	0.00026	20.8	0.0	2.2	3	0	0	3	3	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_2	PF07724.14	gi|410671645|ref|YP_006924016.1|	-	0.00038	20.6	0.0	0.0012	19.0	0.0	1.9	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
AAA_22	PF13401.6	gi|410671645|ref|YP_006924016.1|	-	0.00053	20.3	0.8	0.034	14.4	0.1	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_14	PF13173.6	gi|410671645|ref|YP_006924016.1|	-	0.0044	17.0	0.1	0.021	14.9	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
RNA_helicase	PF00910.22	gi|410671645|ref|YP_006924016.1|	-	0.0082	16.5	0.0	0.017	15.5	0.0	1.5	1	0	0	1	1	1	1	RNA	helicase
ATPase	PF06745.13	gi|410671645|ref|YP_006924016.1|	-	0.0083	15.5	0.6	0.059	12.7	0.0	2.5	3	0	0	3	3	3	1	KaiC
Mg_chelatase	PF01078.21	gi|410671645|ref|YP_006924016.1|	-	0.0091	15.4	0.1	0.089	12.2	0.0	2.3	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|410671645|ref|YP_006924016.1|	-	0.011	15.4	0.0	0.1	12.3	0.0	2.5	3	0	0	3	3	3	0	Sigma-54	interaction	domain
AAA_3	PF07726.11	gi|410671645|ref|YP_006924016.1|	-	0.013	15.3	0.0	0.031	14.2	0.0	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.6	gi|410671645|ref|YP_006924016.1|	-	0.015	15.9	0.0	0.048	14.2	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|410671645|ref|YP_006924016.1|	-	0.016	15.3	0.0	0.032	14.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF815	PF05673.13	gi|410671645|ref|YP_006924016.1|	-	0.018	14.2	0.0	0.041	13.1	0.0	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
Leu_zip	PF15294.6	gi|410671645|ref|YP_006924016.1|	-	0.025	14.1	1.3	0.041	13.4	1.3	1.3	1	0	0	1	1	1	0	Leucine	zipper
AAA_28	PF13521.6	gi|410671645|ref|YP_006924016.1|	-	0.034	14.4	0.0	0.071	13.4	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|410671645|ref|YP_006924016.1|	-	0.048	13.4	0.0	0.11	12.2	0.0	1.6	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_17	PF13207.6	gi|410671645|ref|YP_006924016.1|	-	0.051	14.0	0.2	0.31	11.5	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.12	gi|410671645|ref|YP_006924016.1|	-	0.065	12.5	0.0	0.13	11.5	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
DUF2075	PF09848.9	gi|410671645|ref|YP_006924016.1|	-	0.069	12.4	0.0	0.14	11.4	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Sigma54_activ_2	PF14532.6	gi|410671645|ref|YP_006924016.1|	-	0.086	13.0	0.1	0.63	10.2	0.0	2.2	2	0	0	2	2	2	0	Sigma-54	interaction	domain
TIP49	PF06068.13	gi|410671645|ref|YP_006924016.1|	-	0.11	11.7	0.0	0.11	11.7	0.0	2.1	3	0	0	3	3	3	0	TIP49	P-loop	domain
Torsin	PF06309.11	gi|410671645|ref|YP_006924016.1|	-	0.15	12.2	0.0	1.2	9.2	0.0	2.1	2	0	0	2	2	2	0	Torsin
NACHT	PF05729.12	gi|410671645|ref|YP_006924016.1|	-	0.16	11.9	0.1	3.1	7.7	0.1	2.3	1	1	1	2	2	2	0	NACHT	domain
AAA_19	PF13245.6	gi|410671645|ref|YP_006924016.1|	-	0.5	10.7	2.5	0.66	10.3	0.2	2.1	2	1	0	2	2	2	0	AAA	domain
Penicillinase_R	PF03965.16	gi|410671646|ref|YP_006924017.1|	-	0.003	17.9	0.1	0.003	17.9	0.1	1.7	2	0	0	2	2	2	1	Penicillinase	repressor
DUF131	PF01998.17	gi|410671647|ref|YP_006924018.1|	-	1.6e-12	46.9	2.4	1.6e-12	46.9	2.4	2.0	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF131
DUF3273	PF11677.8	gi|410671647|ref|YP_006924018.1|	-	0.0028	17.0	3.9	0.0032	16.8	3.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3273)
FixP_N	PF14715.6	gi|410671647|ref|YP_006924018.1|	-	0.15	11.8	0.8	0.15	11.8	0.8	2.0	2	0	0	2	2	2	0	N-terminal	domain	of	cytochrome	oxidase-cbb3,	FixP
DUF131	PF01998.17	gi|410671648|ref|YP_006924019.1|	-	6.4e-18	64.2	2.1	6.4e-18	64.2	2.1	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF131
DUF2207	PF09972.9	gi|410671648|ref|YP_006924019.1|	-	3.3	6.4	4.5	3.7	6.2	4.5	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
SdpI	PF13630.6	gi|410671648|ref|YP_006924019.1|	-	4.6	7.4	11.4	0.45	10.7	1.4	2.1	2	0	0	2	2	2	0	SdpI/YhfL	protein	family
DUF4834	PF16118.5	gi|410671648|ref|YP_006924019.1|	-	4.7	8.2	6.1	0.76	10.8	0.2	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4834)
UvrB_inter	PF17757.1	gi|410671649|ref|YP_006924020.1|	-	4.3e-31	106.9	0.3	1.2e-30	105.5	0.1	2.0	2	0	0	2	2	2	1	UvrB	interaction	domain
UvrB	PF12344.8	gi|410671649|ref|YP_006924020.1|	-	3.8e-23	81.0	0.3	6.9e-23	80.2	0.3	1.5	1	0	0	1	1	1	1	Ultra-violet	resistance	protein	B
Helicase_C	PF00271.31	gi|410671649|ref|YP_006924020.1|	-	1.8e-17	63.7	0.1	5.9e-17	62.0	0.1	1.9	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
UVR	PF02151.19	gi|410671649|ref|YP_006924020.1|	-	1.2e-11	44.0	2.2	3.9e-11	42.3	2.2	2.0	1	0	0	1	1	1	1	UvrB/uvrC	motif
ResIII	PF04851.15	gi|410671649|ref|YP_006924020.1|	-	4.6e-11	43.0	0.1	1.4e-09	38.2	0.0	2.5	3	0	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|410671649|ref|YP_006924020.1|	-	0.00092	19.0	0.2	0.0081	15.9	0.1	2.6	3	1	0	3	3	3	1	DEAD/DEAH	box	helicase
AAA_30	PF13604.6	gi|410671649|ref|YP_006924020.1|	-	0.0025	17.5	0.0	0.14	11.9	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
Microtub_bd	PF16796.5	gi|410671649|ref|YP_006924020.1|	-	0.12	12.3	0.0	0.51	10.3	0.0	2.0	2	0	0	2	2	2	0	Microtubule	binding
ABC_tran	PF00005.27	gi|410671650|ref|YP_006924021.1|	-	2e-34	119.0	0.0	3.2e-34	118.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
DUF4162	PF13732.6	gi|410671650|ref|YP_006924021.1|	-	3.9e-11	43.5	0.0	1.1e-10	42.1	0.0	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_21	PF13304.6	gi|410671650|ref|YP_006924021.1|	-	1.9e-10	41.0	0.0	7.6e-05	22.7	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|410671650|ref|YP_006924021.1|	-	1.3e-05	25.1	0.1	0.11	12.2	0.0	2.2	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.6	gi|410671650|ref|YP_006924021.1|	-	0.00029	20.5	0.2	0.00054	19.6	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|410671650|ref|YP_006924021.1|	-	0.00063	19.2	0.1	0.013	15.0	0.1	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|410671650|ref|YP_006924021.1|	-	0.0011	19.5	1.3	0.0025	18.4	1.3	1.8	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|410671650|ref|YP_006924021.1|	-	0.025	14.5	0.0	0.052	13.4	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_PrkA	PF08298.11	gi|410671650|ref|YP_006924021.1|	-	0.045	12.6	0.0	0.096	11.6	0.0	1.5	2	0	0	2	2	2	0	PrkA	AAA	domain
AAA_16	PF13191.6	gi|410671650|ref|YP_006924021.1|	-	0.05	14.0	0.0	0.075	13.4	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
Rad17	PF03215.15	gi|410671650|ref|YP_006924021.1|	-	0.054	13.4	0.0	0.076	12.9	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_22	PF13401.6	gi|410671650|ref|YP_006924021.1|	-	0.15	12.3	0.2	0.66	10.3	0.2	2.0	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|410671650|ref|YP_006924021.1|	-	0.21	12.0	0.9	3.2	8.2	0.4	2.7	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RelB	PF04221.12	gi|410671652|ref|YP_006924023.1|	-	9.9e-06	25.4	0.1	2.2e-05	24.3	0.1	1.6	1	1	0	1	1	1	1	RelB	antitoxin
RHH_1	PF01402.21	gi|410671652|ref|YP_006924023.1|	-	0.024	14.5	0.0	3	7.9	0.0	2.1	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
ParG	PF09274.10	gi|410671652|ref|YP_006924023.1|	-	0.044	13.9	0.2	0.21	11.8	0.0	1.9	1	1	0	2	2	2	0	ParG
ParE_toxin	PF05016.15	gi|410671653|ref|YP_006924024.1|	-	3e-07	31.0	0.6	3.2e-07	30.9	0.6	1.1	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
YafQ_toxin	PF15738.5	gi|410671653|ref|YP_006924024.1|	-	1.2e-06	28.7	1.1	1.8e-06	28.2	1.1	1.3	1	1	0	1	1	1	1	Bacterial	toxin	of	type	II	toxin-antitoxin	system,	YafQ
ParE-like_toxin	PF15781.5	gi|410671653|ref|YP_006924024.1|	-	7.1e-06	25.9	0.1	8.1e-06	25.7	0.1	1.1	1	0	0	1	1	1	1	ParE-like	toxin	of	type	II	bacterial	toxin-antitoxin	system
HigB-like_toxin	PF05015.13	gi|410671653|ref|YP_006924024.1|	-	0.012	16.0	0.1	0.014	15.7	0.1	1.2	1	1	0	1	1	1	0	RelE-like	toxin	of	type	II	toxin-antitoxin	system	HigB
DUF1154	PF06631.11	gi|410671653|ref|YP_006924024.1|	-	0.042	13.9	2.3	0.067	13.2	2.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1154)
YoeB_toxin	PF06769.14	gi|410671653|ref|YP_006924024.1|	-	0.054	13.5	0.1	0.07	13.2	0.1	1.2	1	0	0	1	1	1	0	YoeB-like	toxin	of	bacterial	type	II	toxin-antitoxin	system
GSH_synth_ATP	PF03917.17	gi|410671653|ref|YP_006924024.1|	-	0.14	10.9	0.0	0.16	10.7	0.0	1.1	1	0	0	1	1	1	0	Eukaryotic	glutathione	synthase,	ATP	binding	domain
PHP	PF02811.19	gi|410671654|ref|YP_006924025.1|	-	2e-06	28.2	0.0	5.2e-06	26.9	0.0	1.7	1	1	0	1	1	1	1	PHP	domain
PHP_C	PF13263.6	gi|410671656|ref|YP_006924026.1|	-	0.047	13.5	0.0	0.096	12.4	0.0	1.6	1	0	0	1	1	1	0	PHP-associated
FAD_binding_7	PF03441.14	gi|410671657|ref|YP_006924028.1|	-	2.8e-78	262.0	0.3	3.8e-78	261.6	0.3	1.2	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.18	gi|410671657|ref|YP_006924028.1|	-	8.6e-43	146.2	0.0	1.5e-42	145.4	0.0	1.4	1	0	0	1	1	1	1	DNA	photolyase
OprF	PF05736.11	gi|410671657|ref|YP_006924028.1|	-	0.031	14.0	0.0	0.058	13.1	0.0	1.4	1	0	0	1	1	1	0	OprF	membrane	domain
DUF2944	PF11161.8	gi|410671657|ref|YP_006924028.1|	-	0.041	13.8	0.0	0.072	13.0	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2946)
MatE	PF01554.18	gi|410671658|ref|YP_006924029.1|	-	2.7e-38	131.2	33.8	6.8e-24	84.3	12.8	2.5	2	0	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|410671658|ref|YP_006924029.1|	-	3e-07	30.6	30.1	4e-06	27.0	14.7	5.1	2	2	2	5	5	5	2	Polysaccharide	biosynthesis	C-terminal	domain
DUF1724	PF08350.10	gi|410671659|ref|YP_006924030.1|	-	2.3e-22	78.9	0.5	4.9e-22	77.8	0.5	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
HTH_45	PF14947.6	gi|410671659|ref|YP_006924030.1|	-	0.028	14.4	0.2	0.078	13.0	0.2	1.8	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_20	PF12840.7	gi|410671659|ref|YP_006924030.1|	-	0.14	12.3	0.1	0.26	11.4	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF3748	PF12566.8	gi|410671659|ref|YP_006924030.1|	-	0.15	12.0	0.0	0.26	11.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3748)
DUF4293	PF14126.6	gi|410671660|ref|YP_006924031.1|	-	6.9	6.9	13.1	10	6.4	8.7	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4293)
SIMPL	PF04402.14	gi|410671661|ref|YP_006924032.1|	-	1.7e-44	152.7	9.6	2e-44	152.5	9.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
Fer4_16	PF13484.6	gi|410671663|ref|YP_006924034.1|	-	1.6e-05	25.8	2.3	2.9e-05	24.9	2.3	1.4	1	0	0	1	1	1	1	4Fe-4S	double	cluster	binding	domain
Antistasin	PF02822.14	gi|410671663|ref|YP_006924034.1|	-	0.01	16.5	5.2	0.45	11.2	0.3	2.4	2	0	0	2	2	2	0	Antistasin	family
Fer4_7	PF12838.7	gi|410671663|ref|YP_006924034.1|	-	0.011	16.3	4.4	0.042	14.4	4.5	1.9	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410671663|ref|YP_006924034.1|	-	0.015	15.5	3.0	1.6	9.0	0.9	2.3	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|410671663|ref|YP_006924034.1|	-	0.017	16.1	9.3	0.14	13.2	2.1	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|410671663|ref|YP_006924034.1|	-	0.089	13.0	0.6	0.26	11.5	0.6	1.7	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|410671663|ref|YP_006924034.1|	-	0.1	12.5	0.1	0.1	12.5	0.1	3.2	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|410671663|ref|YP_006924034.1|	-	0.84	9.8	7.3	8.5	6.6	0.6	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410671663|ref|YP_006924034.1|	-	1.2	9.3	12.1	0.67	10.1	1.5	2.7	2	1	0	2	2	2	0	4Fe-4S	binding	domain
DUF1724	PF08350.10	gi|410671665|ref|YP_006924036.1|	-	7.1e-22	77.3	0.3	1.6e-21	76.2	0.3	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
Trp_halogenase	PF04820.14	gi|410671667|ref|YP_006924038.1|	-	0.099	11.5	0.1	0.12	11.2	0.1	1.1	1	0	0	1	1	1	0	Tryptophan	halogenase
Hemerythrin	PF01814.23	gi|410671668|ref|YP_006924039.1|	-	1.6e-12	48.2	4.5	2e-12	47.9	4.5	1.2	1	0	0	1	1	1	1	Hemerythrin	HHE	cation	binding	domain
DUF3198	PF11433.8	gi|410671668|ref|YP_006924039.1|	-	0.0014	18.5	2.5	0.0014	18.5	0.8	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3198)
Spore_YtfJ	PF09579.10	gi|410671670|ref|YP_006924041.1|	-	9.4e-22	77.0	1.4	9.4e-22	77.0	1.4	2.6	2	1	0	2	2	2	1	Sporulation	protein	YtfJ	(Spore_YtfJ)
Folliculin	PF11704.8	gi|410671670|ref|YP_006924041.1|	-	0.089	12.7	0.1	0.14	12.0	0.1	1.2	1	0	0	1	1	1	0	Vesicle	coat	protein	involved	in	Golgi	to	plasma	membrane	transport
RNA_pol_inhib	PF16857.5	gi|410671672|ref|YP_006924043.1|	-	0.058	13.2	0.0	0.059	13.2	0.0	1.2	1	0	0	1	1	1	0	RNA	polymerase	inhibitor
Lactamase_B	PF00753.27	gi|410671674|ref|YP_006924045.1|	-	6.2e-05	23.1	0.0	0.00012	22.1	0.0	1.5	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Flavodoxin_1	PF00258.25	gi|410671674|ref|YP_006924045.1|	-	6.3e-05	23.2	0.0	0.0002	21.6	0.0	1.8	1	1	0	1	1	1	1	Flavodoxin
Lactamase_B_2	PF12706.7	gi|410671674|ref|YP_006924045.1|	-	0.00049	19.7	0.0	0.00087	18.9	0.0	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|410671674|ref|YP_006924045.1|	-	0.073	13.0	0.0	0.17	11.8	0.0	1.6	2	0	0	2	2	2	0	Beta-lactamase	superfamily	domain
Cupredoxin_1	PF13473.6	gi|410671675|ref|YP_006924046.1|	-	2.3e-07	30.9	0.4	1.2e-06	28.5	0.0	2.2	3	0	0	3	3	3	1	Cupredoxin-like	domain
Copper-bind	PF00127.20	gi|410671675|ref|YP_006924046.1|	-	0.0013	19.2	0.1	0.038	14.4	0.1	2.5	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Fer4_13	PF13370.6	gi|410671676|ref|YP_006924047.1|	-	4.1e-19	68.9	4.5	4.9e-19	68.6	4.5	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|410671676|ref|YP_006924047.1|	-	6.8e-10	39.5	3.0	9.2e-10	39.1	3.0	1.2	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4	PF00037.27	gi|410671676|ref|YP_006924047.1|	-	0.00035	20.3	5.4	0.014	15.2	1.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|410671676|ref|YP_006924047.1|	-	0.0013	19.3	1.1	0.0038	17.8	1.1	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410671676|ref|YP_006924047.1|	-	0.0041	17.2	3.3	0.015	15.4	1.1	2.1	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410671676|ref|YP_006924047.1|	-	0.0059	16.7	1.1	0.022	14.8	1.3	1.7	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410671676|ref|YP_006924047.1|	-	0.012	15.7	0.9	0.065	13.4	1.1	1.9	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410671676|ref|YP_006924047.1|	-	0.017	15.2	1.2	0.017	15.2	1.2	1.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|410671676|ref|YP_006924047.1|	-	2.9	9.0	6.0	20	6.4	2.0	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
PQ-loop	PF04193.14	gi|410671677|ref|YP_006924048.1|	-	1.1e-11	44.3	0.6	1.6e-11	43.8	0.6	1.3	1	0	0	1	1	1	1	PQ	loop	repeat
MtN3_slv	PF03083.16	gi|410671677|ref|YP_006924048.1|	-	3.4e-10	39.8	1.4	4e-10	39.6	1.4	1.2	1	0	0	1	1	1	1	Sugar	efflux	transporter	for	intercellular	exchange
LAB_N	PF07578.11	gi|410671677|ref|YP_006924048.1|	-	0.00017	21.6	0.2	0.00021	21.3	0.2	1.2	1	0	0	1	1	1	1	Lipid	A	Biosynthesis	N-terminal	domain
Peptidase_C39_2	PF13529.6	gi|410671679|ref|YP_006924050.1|	-	1.6e-13	51.4	0.1	3.9e-13	50.2	0.1	1.7	2	0	0	2	2	2	1	Peptidase_C39	like	family
BtrH_N	PF14399.6	gi|410671679|ref|YP_006924050.1|	-	0.039	14.2	0.0	0.075	13.3	0.0	1.5	1	0	0	1	1	1	0	Butirosin	biosynthesis	protein	H,	N-terminal
N_NLPC_P60	PF12912.7	gi|410671679|ref|YP_006924050.1|	-	0.089	13.2	0.1	0.16	12.3	0.1	1.3	1	0	0	1	1	1	0	NLPC_P60	stabilising	domain,	N	term
Peptidase_C39	PF03412.15	gi|410671679|ref|YP_006924050.1|	-	0.12	12.2	0.0	0.21	11.4	0.0	1.4	1	0	0	1	1	1	0	Peptidase	C39	family
PAS_4	PF08448.10	gi|410671681|ref|YP_006924052.1|	-	2.9e-24	85.4	0.0	3e-11	43.6	0.0	2.3	2	0	0	2	2	2	2	PAS	fold
Response_reg	PF00072.24	gi|410671681|ref|YP_006924052.1|	-	3.6e-20	72.2	0.0	1.5e-19	70.3	0.0	2.0	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|410671681|ref|YP_006924052.1|	-	2.7e-17	63.3	0.0	6.4e-17	62.1	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|410671681|ref|YP_006924052.1|	-	1.4e-15	57.4	0.0	1.7e-08	34.7	0.0	2.5	2	0	0	2	2	2	2	PAS	domain
PAS	PF00989.25	gi|410671681|ref|YP_006924052.1|	-	3.2e-13	49.6	0.0	1e-05	25.5	0.0	2.5	2	0	0	2	2	2	2	PAS	fold
PAS_8	PF13188.7	gi|410671681|ref|YP_006924052.1|	-	3.9e-09	36.3	0.0	0.001	19.0	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
PAS_3	PF08447.12	gi|410671681|ref|YP_006924052.1|	-	8.5e-07	29.2	0.1	0.0079	16.5	0.0	2.9	3	0	0	3	3	3	2	PAS	fold
PAS_7	PF12860.7	gi|410671681|ref|YP_006924052.1|	-	0.0013	18.9	0.0	6.1	7.0	0.0	3.7	4	0	0	4	4	4	2	PAS	fold
PAS_11	PF14598.6	gi|410671681|ref|YP_006924052.1|	-	0.025	14.7	0.0	5.8	7.1	0.0	2.4	2	0	0	2	2	2	0	PAS	domain
HisKA	PF00512.25	gi|410671681|ref|YP_006924052.1|	-	0.038	14.0	0.1	0.095	12.8	0.1	1.7	1	0	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|410671681|ref|YP_006924052.1|	-	0.073	13.0	0.0	0.2	11.6	0.0	1.7	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
dCMP_cyt_deam_1	PF00383.23	gi|410671682|ref|YP_006924053.1|	-	1.2e-22	79.7	0.0	1.5e-22	79.3	0.0	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
MafB19-deam	PF14437.6	gi|410671682|ref|YP_006924053.1|	-	3.2e-21	75.5	0.1	3.8e-21	75.3	0.1	1.0	1	0	0	1	1	1	1	MafB19-like	deaminase
Bd3614-deam	PF14439.6	gi|410671682|ref|YP_006924053.1|	-	0.0048	17.0	0.5	0.014	15.5	0.4	1.7	1	1	1	2	2	2	1	Bd3614-like	deaminase
SNAD4	PF18750.1	gi|410671682|ref|YP_006924053.1|	-	0.011	15.8	0.0	0.045	13.9	0.0	1.8	2	0	0	2	2	2	0	Secreted	Novel	AID/APOBEC-like	Deaminase	4
NAD1	PF18778.1	gi|410671682|ref|YP_006924053.1|	-	0.084	13.0	0.1	0.71	9.9	0.1	2.0	1	1	0	1	1	1	0	Novel	AID	APOBEC	clade	1
Peptidase_U32	PF01136.19	gi|410671683|ref|YP_006924054.1|	-	3.2e-83	278.5	0.0	4.1e-83	278.1	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	U32
FeoA	PF04023.14	gi|410671684|ref|YP_006924055.1|	-	2.4e-14	53.4	0.0	2.6e-14	53.2	0.0	1.0	1	0	0	1	1	1	1	FeoA	domain
K-box	PF01486.17	gi|410671685|ref|YP_006924056.1|	-	0.076	13.2	2.0	0.15	12.3	0.5	1.8	1	1	1	2	2	2	0	K-box	region
DHODB_Fe-S_bind	PF10418.9	gi|410671686|ref|YP_006924057.1|	-	1.3e-10	40.9	7.4	1.3e-10	40.9	7.4	2.0	2	0	0	2	2	2	1	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
NAD_binding_1	PF00175.21	gi|410671686|ref|YP_006924057.1|	-	1.7e-05	25.4	0.7	7.8e-05	23.3	0.7	2.0	1	1	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
FAD_binding_6	PF00970.24	gi|410671686|ref|YP_006924057.1|	-	0.039	14.3	0.0	0.35	11.2	0.0	2.3	1	1	0	1	1	1	0	Oxidoreductase	FAD-binding	domain
Fer2_3	PF13085.6	gi|410671686|ref|YP_006924057.1|	-	0.11	12.5	0.6	0.21	11.6	0.6	1.4	1	0	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
LAMTOR5	PF16672.5	gi|410671686|ref|YP_006924057.1|	-	0.17	11.8	0.4	0.58	10.1	0.5	1.7	2	0	0	2	2	2	0	Ragulator	complex	protein	LAMTOR5
DHO_dh	PF01180.21	gi|410671687|ref|YP_006924058.1|	-	1.3e-64	218.3	0.5	1.4e-64	218.1	0.5	1.0	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
Dus	PF01207.17	gi|410671687|ref|YP_006924058.1|	-	2.5e-11	43.2	1.4	2.1e-10	40.2	1.4	1.9	1	1	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
NMO	PF03060.15	gi|410671687|ref|YP_006924058.1|	-	2.4e-05	23.9	5.0	6.4e-05	22.5	5.0	1.7	1	1	0	1	1	1	1	Nitronate	monooxygenase
His_biosynth	PF00977.21	gi|410671687|ref|YP_006924058.1|	-	4.1e-05	23.2	0.3	0.00017	21.1	0.1	2.2	2	1	1	3	3	3	1	Histidine	biosynthesis	protein
IMPDH	PF00478.25	gi|410671687|ref|YP_006924058.1|	-	0.0042	16.1	2.3	0.0075	15.3	2.3	1.6	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
DUF561	PF04481.12	gi|410671687|ref|YP_006924058.1|	-	0.0052	16.0	0.5	0.012	14.8	0.5	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF561)
G3P_antiterm	PF04309.12	gi|410671687|ref|YP_006924058.1|	-	0.025	14.0	1.2	0.6	9.5	0.1	2.6	3	0	0	3	3	3	0	Glycerol-3-phosphate	responsive	antiterminator
ThiG	PF05690.14	gi|410671687|ref|YP_006924058.1|	-	0.047	13.0	1.7	0.08	12.2	0.2	2.0	2	0	0	2	2	2	0	Thiazole	biosynthesis	protein	ThiG
NanE	PF04131.14	gi|410671687|ref|YP_006924058.1|	-	0.077	12.2	1.1	0.23	10.6	1.1	2.0	1	1	0	1	1	1	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
Porphobil_deam	PF01379.20	gi|410671688|ref|YP_006924059.1|	-	1.7e-69	233.4	0.2	2.3e-69	233.0	0.2	1.1	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
Porphobil_deamC	PF03900.15	gi|410671688|ref|YP_006924059.1|	-	1.4e-08	35.0	0.0	3.5e-08	33.7	0.0	1.7	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	C-terminal	domain
Aminotran_3	PF00202.21	gi|410671689|ref|YP_006924060.1|	-	1.3e-67	228.2	0.0	1.7e-67	227.9	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
ALAD	PF00490.21	gi|410671690|ref|YP_006924061.1|	-	2.1e-148	493.7	0.3	2.3e-148	493.5	0.3	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
Mob_Pre	PF01076.19	gi|410671690|ref|YP_006924061.1|	-	0.091	12.6	0.0	0.15	11.8	0.0	1.3	1	0	0	1	1	1	0	Plasmid	recombination	enzyme
Shikimate_DH	PF01488.20	gi|410671691|ref|YP_006924062.1|	-	4e-39	133.8	1.1	6e-39	133.3	0.2	1.7	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
GlutR_N	PF05201.15	gi|410671691|ref|YP_006924062.1|	-	8.8e-37	126.1	0.1	1.8e-36	125.1	0.1	1.6	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	N-terminal	domain
GlutR_dimer	PF00745.20	gi|410671691|ref|YP_006924062.1|	-	9.1e-19	67.7	1.3	2.2e-18	66.5	1.3	1.7	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
F420_oxidored	PF03807.17	gi|410671691|ref|YP_006924062.1|	-	1.7e-07	31.7	0.0	5.2e-07	30.1	0.0	1.9	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Glu_dehyd_C	PF16912.5	gi|410671691|ref|YP_006924062.1|	-	1.5e-06	27.9	0.1	2.8e-06	27.0	0.1	1.4	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
2-Hacid_dh_C	PF02826.19	gi|410671691|ref|YP_006924062.1|	-	2.1e-05	24.0	0.2	5.6e-05	22.6	0.2	1.7	1	1	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|410671691|ref|YP_006924062.1|	-	2.2e-05	24.7	0.1	6.9e-05	23.1	0.1	1.8	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Semialdhyde_dh	PF01118.24	gi|410671691|ref|YP_006924062.1|	-	8.2e-05	23.0	0.0	0.00021	21.7	0.0	1.7	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|410671691|ref|YP_006924062.1|	-	9.6e-05	22.8	0.1	0.00025	21.4	0.1	1.7	1	0	0	1	1	1	1	Putative	NAD(P)-binding
GFO_IDH_MocA	PF01408.22	gi|410671691|ref|YP_006924062.1|	-	0.00043	21.1	0.1	0.0028	18.5	0.1	2.2	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
THF_DHG_CYH_C	PF02882.19	gi|410671691|ref|YP_006924062.1|	-	0.00071	18.9	0.7	0.012	15.0	0.3	2.6	2	1	0	2	2	2	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
TrkA_N	PF02254.18	gi|410671691|ref|YP_006924062.1|	-	0.0027	18.0	0.1	0.01	16.1	0.1	2.1	1	0	0	1	1	1	1	TrkA-N	domain
OCD_Mu_crystall	PF02423.15	gi|410671691|ref|YP_006924062.1|	-	0.0062	15.5	0.0	0.011	14.7	0.0	1.3	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
NAD_binding_10	PF13460.6	gi|410671691|ref|YP_006924062.1|	-	0.01	15.7	0.0	0.021	14.7	0.0	1.5	1	0	0	1	1	1	0	NAD(P)H-binding
AlaDh_PNT_C	PF01262.21	gi|410671691|ref|YP_006924062.1|	-	0.011	15.0	0.1	0.021	14.1	0.1	1.5	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
IlvN	PF07991.12	gi|410671691|ref|YP_006924062.1|	-	0.016	14.8	0.0	0.04	13.5	0.0	1.7	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|410671691|ref|YP_006924062.1|	-	0.026	14.8	0.1	0.068	13.4	0.1	1.9	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
DUF2325	PF10087.9	gi|410671691|ref|YP_006924062.1|	-	0.07	13.2	2.0	0.19	11.9	0.1	2.7	3	1	1	4	4	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2325)
NAD_binding_7	PF13241.6	gi|410671692|ref|YP_006924063.1|	-	1e-10	42.0	0.1	2.3e-10	40.8	0.0	1.6	2	0	0	2	2	2	1	Putative	NAD(P)-binding
Sirohm_synth_M	PF14824.6	gi|410671692|ref|YP_006924063.1|	-	5.3e-07	29.0	0.1	8.9e-07	28.3	0.1	1.3	1	0	0	1	1	1	1	Sirohaem	biosynthesis	protein	central
AsnC_trans_reg2	PF17805.1	gi|410671694|ref|YP_006924065.1|	-	1.3e-32	111.8	0.0	2.2e-32	111.0	0.0	1.4	1	0	0	1	1	1	1	AsnC-like	ligand	binding	domain
HTH_AsnC-type	PF13404.6	gi|410671694|ref|YP_006924065.1|	-	5.8e-08	32.4	0.3	1.6e-07	31.1	0.1	1.9	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.7	gi|410671694|ref|YP_006924065.1|	-	0.0058	16.5	0.0	0.0091	15.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|410671694|ref|YP_006924065.1|	-	0.0084	15.6	1.9	0.043	13.4	1.9	2.1	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|410671694|ref|YP_006924065.1|	-	0.0085	16.0	0.1	0.015	15.3	0.1	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|410671694|ref|YP_006924065.1|	-	0.047	13.5	0.0	0.07	12.9	0.0	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_Tnp_ISL3	PF13542.6	gi|410671694|ref|YP_006924065.1|	-	0.055	12.9	0.0	0.12	11.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
DUF4423	PF14394.6	gi|410671694|ref|YP_006924065.1|	-	0.056	13.2	0.0	0.14	11.8	0.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
AsnC_trans_reg2	PF17805.1	gi|410671695|ref|YP_006924066.1|	-	2.6e-24	85.2	0.0	5.7e-24	84.1	0.0	1.5	2	0	0	2	2	2	1	AsnC-like	ligand	binding	domain
HTH_AsnC-type	PF13404.6	gi|410671695|ref|YP_006924066.1|	-	1e-08	34.8	0.0	2e-08	33.9	0.0	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|410671695|ref|YP_006924066.1|	-	0.00096	18.7	2.5	0.097	12.3	0.0	2.6	3	0	0	3	3	3	2	Winged	helix-turn-helix	DNA-binding
IF2_N	PF04760.15	gi|410671695|ref|YP_006924066.1|	-	0.038	13.8	0.8	0.87	9.4	0.1	2.4	2	0	0	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
HTH_11	PF08279.12	gi|410671695|ref|YP_006924066.1|	-	0.053	13.5	0.4	0.26	11.3	0.0	2.0	2	0	0	2	2	2	0	HTH	domain
HTH_Crp_2	PF13545.6	gi|410671695|ref|YP_006924066.1|	-	0.074	13.0	0.0	0.38	10.8	0.0	1.9	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
CoA_binding_3	PF13727.6	gi|410671695|ref|YP_006924066.1|	-	0.11	12.5	0.0	0.17	11.9	0.0	1.3	1	0	0	1	1	1	0	CoA-binding	domain
PKD	PF00801.20	gi|410671695|ref|YP_006924066.1|	-	0.18	11.7	0.0	0.27	11.1	0.0	1.3	1	0	0	1	1	1	0	PKD	domain
TraF_2	PF13729.6	gi|410671695|ref|YP_006924066.1|	-	0.18	11.1	0.0	0.23	10.8	0.0	1.1	1	0	0	1	1	1	0	F	plasmid	transfer	operon,	TraF,	protein
TENA_THI-4	PF03070.16	gi|410671695|ref|YP_006924066.1|	-	0.19	11.5	0.0	0.28	10.9	0.0	1.4	1	1	0	1	1	1	0	TENA/THI-4/PQQC	family
Radical_SAM	PF04055.21	gi|410671696|ref|YP_006924067.1|	-	6.8e-22	78.6	0.3	4.2e-21	76.0	0.0	2.2	1	1	2	3	3	3	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|410671696|ref|YP_006924067.1|	-	4.6e-10	39.9	0.0	2.5e-09	37.5	0.0	2.1	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|410671696|ref|YP_006924067.1|	-	1.2e-09	38.3	0.0	3e-09	37.0	0.0	1.7	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|410671696|ref|YP_006924067.1|	-	2.1e-08	34.5	2.2	5.2e-08	33.3	2.2	1.7	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
CcmE	PF03100.15	gi|410671697|ref|YP_006924068.1|	-	1.9e-16	60.2	0.0	2.1e-16	60.1	0.0	1.0	1	0	0	1	1	1	1	CcmE
polyprenyl_synt	PF00348.17	gi|410671698|ref|YP_006924069.1|	-	6.3e-48	163.1	0.0	7.5e-48	162.8	0.0	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
Radical_SAM	PF04055.21	gi|410671699|ref|YP_006924070.1|	-	2e-15	57.6	0.0	3.2e-15	56.9	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
SPASM	PF13186.6	gi|410671699|ref|YP_006924070.1|	-	2e-06	28.2	0.0	5.6e-06	26.8	0.0	1.8	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
OrfB_IS605	PF01385.19	gi|410671700|ref|YP_006924071.1|	-	3.1e-24	85.5	0.2	6.7e-24	84.4	0.1	1.6	2	0	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|410671700|ref|YP_006924071.1|	-	1.1e-20	73.3	0.1	2.1e-20	72.4	0.1	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
RuvC_1	PF18516.1	gi|410671700|ref|YP_006924071.1|	-	0.028	13.6	0.1	0.055	12.6	0.1	1.6	1	0	0	1	1	1	0	RuvC	nuclease	domain
TF_Zn_Ribbon	PF08271.12	gi|410671700|ref|YP_006924071.1|	-	0.063	12.8	0.6	1.4	8.5	0.0	2.4	1	1	1	2	2	2	0	TFIIB	zinc-binding
DZR	PF12773.7	gi|410671700|ref|YP_006924071.1|	-	0.073	13.1	0.3	0.12	12.4	0.3	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
FYVE	PF01363.21	gi|410671700|ref|YP_006924071.1|	-	0.079	13.1	0.2	0.18	12.0	0.2	1.6	1	0	0	1	1	1	0	FYVE	zinc	finger
AP1AR	PF15745.5	gi|410671700|ref|YP_006924071.1|	-	0.12	12.0	0.3	0.2	11.3	0.3	1.3	1	0	0	1	1	1	0	AP-1	complex-associated	regulatory	protein
FeoB_Cyto	PF17910.1	gi|410671700|ref|YP_006924071.1|	-	0.2	12.2	1.6	0.63	10.6	0.5	2.4	2	1	0	2	2	2	0	FeoB	cytosolic	helical	domain
V-ATPase_G_2	PF16999.5	gi|410671701|ref|YP_006924072.1|	-	6.3e-09	36.2	14.5	7.3e-09	36.0	14.5	1.0	1	0	0	1	1	1	1	Vacuolar	(H+)-ATPase	G	subunit
ATP-synt_B	PF00430.18	gi|410671701|ref|YP_006924072.1|	-	7.4e-05	22.8	12.7	7.4e-05	22.8	12.7	2.0	1	1	1	2	2	2	1	ATP	synthase	B/B'	CF(0)
V-ATPase_G	PF03179.15	gi|410671701|ref|YP_006924072.1|	-	0.01	16.3	12.3	0.013	16.0	12.3	1.2	1	0	0	1	1	1	0	Vacuolar	(H+)-ATPase	G	subunit
DUF2992	PF11208.8	gi|410671701|ref|YP_006924072.1|	-	0.094	13.0	3.7	0.11	12.8	3.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2992)
DUF883	PF05957.13	gi|410671701|ref|YP_006924072.1|	-	0.098	13.3	5.6	0.11	13.1	5.0	1.4	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF883)
SCAB_CC	PF16712.5	gi|410671701|ref|YP_006924072.1|	-	0.2	11.5	8.1	0.32	10.8	8.0	1.4	1	1	0	1	1	1	0	Coiled-coil	regions	of	plant-specific	actin-binding	protein
Plasmid_parti	PF01672.16	gi|410671701|ref|YP_006924072.1|	-	1.2	9.8	3.8	3.3	8.4	2.6	2.1	1	1	1	2	2	2	0	Putative	plasmid	partition	protein
V_ATPase_I	PF01496.19	gi|410671702|ref|YP_006924073.1|	-	8.6e-29	100.0	2.8	2.5e-17	62.1	0.0	3.9	4	0	0	4	4	4	2	V-type	ATPase	116kDa	subunit	family
APG6_N	PF17675.1	gi|410671702|ref|YP_006924073.1|	-	0.11	13.0	5.2	4.5	7.8	0.5	2.2	2	0	0	2	2	2	0	Apg6	coiled-coil	region
CLZ	PF16526.5	gi|410671702|ref|YP_006924073.1|	-	0.16	12.4	1.5	12	6.3	0.1	2.5	2	0	0	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
Spc24	PF08286.11	gi|410671702|ref|YP_006924073.1|	-	0.16	12.2	1.7	3.1	8.1	0.1	2.3	2	0	0	2	2	2	0	Spc24	subunit	of	Ndc80
Prefoldin_2	PF01920.20	gi|410671702|ref|YP_006924073.1|	-	5.5	7.0	6.1	2.4	8.2	0.7	2.3	2	0	0	2	2	2	0	Prefoldin	subunit
ATP-synt_C	PF00137.21	gi|410671703|ref|YP_006924074.1|	-	5.3e-17	61.9	9.3	6.4e-17	61.7	9.3	1.1	1	0	0	1	1	1	1	ATP	synthase	subunit	C
CinA	PF02464.17	gi|410671703|ref|YP_006924074.1|	-	0.024	14.2	0.5	0.024	14.2	0.5	1.1	1	0	0	1	1	1	0	Competence-damaged	protein
vATP-synt_E	PF01991.18	gi|410671704|ref|YP_006924075.1|	-	3.8e-23	81.9	16.1	4.1e-21	75.3	16.1	2.0	1	1	0	1	1	1	1	ATP	synthase	(E/31	kDa)	subunit
ATP-synt_B	PF00430.18	gi|410671704|ref|YP_006924075.1|	-	0.0042	17.2	11.7	0.0042	17.2	11.7	1.7	1	1	0	1	1	1	1	ATP	synthase	B/B'	CF(0)
DivIVA	PF05103.13	gi|410671704|ref|YP_006924075.1|	-	0.0051	16.9	5.2	0.0051	16.9	5.2	2.1	1	1	1	2	2	2	1	DivIVA	protein
Cytochrom_C552	PF02335.15	gi|410671704|ref|YP_006924075.1|	-	0.031	13.2	0.5	0.038	12.9	0.5	1.1	1	0	0	1	1	1	0	Cytochrome	c552
V-ATPase_G_2	PF16999.5	gi|410671704|ref|YP_006924075.1|	-	0.25	11.8	13.8	0.17	12.3	9.6	2.3	1	1	1	2	2	2	0	Vacuolar	(H+)-ATPase	G	subunit
DUF4230	PF14014.6	gi|410671704|ref|YP_006924075.1|	-	3.4	7.9	7.5	3.9	7.7	3.2	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4230)
vATP-synt_AC39	PF01992.16	gi|410671705|ref|YP_006924076.1|	-	1.7e-74	251.4	2.1	1.9e-74	251.2	2.1	1.0	1	0	0	1	1	1	1	ATP	synthase	(C/AC39)	subunit
ATP-synt_F	PF01990.17	gi|410671706|ref|YP_006924077.1|	-	1.8e-14	53.8	0.0	2.1e-14	53.6	0.0	1.0	1	0	0	1	1	1	1	ATP	synthase	(F/14-kDa)	subunit
YcgL	PF05166.13	gi|410671706|ref|YP_006924077.1|	-	0.074	13.4	0.0	3.3	8.1	0.0	2.1	1	1	1	2	2	2	0	YcgL	domain
ATP-synt_ab	PF00006.25	gi|410671707|ref|YP_006924078.1|	-	4.5e-96	320.6	0.0	6.5e-96	320.1	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_Xtn	PF16886.5	gi|410671707|ref|YP_006924078.1|	-	7.9e-45	151.6	0.1	1.4e-44	150.9	0.1	1.4	1	0	0	1	1	1	1	ATPsynthase	alpha/beta	subunit	N-term	extension
ATP-synt_ab_N	PF02874.23	gi|410671707|ref|YP_006924078.1|	-	8e-15	55.1	2.2	2.1e-14	53.8	1.5	2.2	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
AAA_22	PF13401.6	gi|410671707|ref|YP_006924078.1|	-	0.023	15.0	0.0	0.046	14.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
RnfC_N	PF13375.6	gi|410671707|ref|YP_006924078.1|	-	0.041	13.8	0.4	0.19	11.7	0.0	2.1	2	0	0	2	2	2	0	RnfC	Barrel	sandwich	hybrid	domain
Peptidase_M23	PF01551.22	gi|410671707|ref|YP_006924078.1|	-	0.16	12.2	0.2	12	6.2	0.0	2.7	2	0	0	2	2	2	0	Peptidase	family	M23
ATP-synt_ab	PF00006.25	gi|410671708|ref|YP_006924079.1|	-	2.3e-65	220.2	0.0	3.1e-65	219.8	0.0	1.1	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_N	PF02874.23	gi|410671708|ref|YP_006924079.1|	-	1.1e-10	41.9	0.8	1.1e-10	41.9	0.8	1.8	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.10	gi|410671708|ref|YP_006924079.1|	-	6.3e-05	23.1	0.6	0.00021	21.4	0.3	2.1	3	0	0	3	3	3	1	HAS	barrel	domain
ATP-synt_D	PF01813.17	gi|410671709|ref|YP_006924080.1|	-	2.3e-55	187.5	6.9	2.6e-55	187.3	6.9	1.0	1	0	0	1	1	1	1	ATP	synthase	subunit	D
PMT_2	PF13231.6	gi|410671710|ref|YP_006924081.1|	-	3.4e-20	72.9	16.4	3.4e-20	72.9	16.4	2.4	2	0	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
SieB	PF14163.6	gi|410671710|ref|YP_006924081.1|	-	4.9	6.6	15.2	1.3	8.5	2.0	4.0	4	0	0	4	4	4	0	Super-infection	exclusion	protein	B
GDP_Man_Dehyd	PF16363.5	gi|410671712|ref|YP_006924083.1|	-	6e-64	216.5	0.0	1.4e-63	215.3	0.0	1.6	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|410671712|ref|YP_006924083.1|	-	4.8e-56	189.9	0.0	7.5e-56	189.3	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|410671712|ref|YP_006924083.1|	-	6.7e-22	77.8	0.0	9.8e-22	77.3	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|410671712|ref|YP_006924083.1|	-	2.8e-13	49.7	0.0	2.4e-12	46.6	0.0	2.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|410671712|ref|YP_006924083.1|	-	1.8e-12	47.0	0.1	3e-08	33.2	0.0	3.0	1	1	1	2	2	2	2	Male	sterility	protein
RmlD_sub_bind	PF04321.17	gi|410671712|ref|YP_006924083.1|	-	5.7e-12	45.3	0.0	8e-12	44.8	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
KR	PF08659.10	gi|410671712|ref|YP_006924083.1|	-	0.0028	17.6	0.1	0.13	12.2	0.1	3.1	2	1	0	2	2	2	1	KR	domain
adh_short	PF00106.25	gi|410671712|ref|YP_006924083.1|	-	0.0068	15.9	0.4	0.12	11.9	0.1	2.5	2	1	0	2	2	2	1	short	chain	dehydrogenase
Glycos_transf_2	PF00535.26	gi|410671713|ref|YP_006924084.1|	-	1.3e-39	135.8	1.5	7.4e-38	130.0	0.4	2.2	2	0	0	2	2	2	2	Glycosyl	transferase	family	2
Glyco_tranf_2_2	PF10111.9	gi|410671713|ref|YP_006924084.1|	-	2.8e-09	36.9	0.3	4e-09	36.4	0.3	1.4	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_3	PF13641.6	gi|410671713|ref|YP_006924084.1|	-	3.2e-08	33.7	0.0	7.4e-08	32.5	0.0	1.5	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|410671713|ref|YP_006924084.1|	-	0.00031	21.2	0.1	0.0012	19.4	0.0	1.9	1	1	1	2	2	2	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.6	gi|410671713|ref|YP_006924084.1|	-	0.0071	15.8	0.0	0.013	15.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glycos_transf_1	PF00534.20	gi|410671714|ref|YP_006924085.1|	-	1.3e-43	148.5	0.2	2.4e-43	147.6	0.2	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|410671714|ref|YP_006924085.1|	-	2e-30	105.9	0.0	3.8e-30	105.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|410671714|ref|YP_006924085.1|	-	1e-18	67.9	0.0	2.1e-18	66.9	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_2	PF13477.6	gi|410671714|ref|YP_006924085.1|	-	1.1e-14	54.7	1.1	3.1e-14	53.2	0.3	2.0	2	0	0	2	2	2	1	Glycosyl	transferase	4-like
Glyco_trans_4_4	PF13579.6	gi|410671714|ref|YP_006924085.1|	-	5.4e-13	49.7	0.0	7.6e-13	49.2	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|410671714|ref|YP_006924085.1|	-	0.00084	19.7	0.0	0.0025	18.1	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_5	PF08323.11	gi|410671714|ref|YP_006924085.1|	-	0.07	12.8	0.1	0.2	11.3	0.1	1.8	1	1	0	2	2	2	0	Starch	synthase	catalytic	domain
Methyltransf_23	PF13489.6	gi|410671715|ref|YP_006924086.1|	-	7.2e-13	48.7	0.0	9.9e-13	48.2	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|410671715|ref|YP_006924086.1|	-	7.1e-11	42.7	0.0	1.2e-10	41.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|410671715|ref|YP_006924086.1|	-	1.9e-10	40.7	0.1	2.5e-10	40.4	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410671715|ref|YP_006924086.1|	-	2.2e-10	41.1	0.0	4.1e-10	40.2	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|410671715|ref|YP_006924086.1|	-	7e-10	39.5	0.1	1.5e-09	38.5	0.1	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|410671715|ref|YP_006924086.1|	-	4.5e-09	36.2	0.0	6e-09	35.8	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
CMAS	PF02353.20	gi|410671715|ref|YP_006924086.1|	-	4e-06	26.3	0.0	5.7e-06	25.8	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_32	PF13679.6	gi|410671715|ref|YP_006924086.1|	-	0.00025	21.1	0.2	0.00046	20.2	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_2	PF00891.18	gi|410671715|ref|YP_006924086.1|	-	0.0012	18.2	0.0	0.0025	17.1	0.0	1.5	1	1	0	1	1	1	1	O-methyltransferase	domain
Methyltransf_9	PF08003.11	gi|410671715|ref|YP_006924086.1|	-	0.0018	17.3	0.0	0.0023	16.9	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
MTS	PF05175.14	gi|410671715|ref|YP_006924086.1|	-	0.0048	16.5	0.0	0.012	15.2	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	small	domain
CheR	PF01739.18	gi|410671715|ref|YP_006924086.1|	-	0.0052	16.3	0.1	0.075	12.5	0.2	2.2	1	1	1	2	2	2	1	CheR	methyltransferase,	SAM	binding	domain
Methyltransf_4	PF02390.17	gi|410671715|ref|YP_006924086.1|	-	0.0066	15.9	0.2	0.013	15.0	0.2	1.6	1	0	0	1	1	1	1	Putative	methyltransferase
AdoMet_MTase	PF07757.13	gi|410671715|ref|YP_006924086.1|	-	0.011	16.0	0.2	0.1	12.9	0.1	2.3	2	0	0	2	2	2	0	Predicted	AdoMet-dependent	methyltransferase
Methyltransf_18	PF12847.7	gi|410671715|ref|YP_006924086.1|	-	0.02	14.8	0.1	0.14	12.1	0.0	2.3	1	1	0	2	2	2	0	Methyltransferase	domain
ERF	PF04404.12	gi|410671715|ref|YP_006924086.1|	-	0.05	13.5	0.1	0.086	12.7	0.1	1.5	1	1	0	1	1	1	0	ERF	superfamily
Glycos_transf_1	PF00534.20	gi|410671716|ref|YP_006924087.1|	-	1e-17	64.2	0.1	1.8e-17	63.4	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|410671716|ref|YP_006924087.1|	-	2.3e-11	44.3	0.0	3.2e-11	43.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|410671716|ref|YP_006924087.1|	-	1.2e-05	25.6	0.0	0.00089	19.6	0.0	2.9	3	0	0	3	3	3	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|410671716|ref|YP_006924087.1|	-	0.00042	20.3	0.0	0.00067	19.7	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_2	PF13477.6	gi|410671716|ref|YP_006924087.1|	-	0.0021	18.1	0.5	0.0058	16.7	0.5	1.8	1	1	0	1	1	1	1	Glycosyl	transferase	4-like
CDC24	PF06395.11	gi|410671716|ref|YP_006924087.1|	-	0.067	13.5	1.6	0.88	9.9	0.1	3.0	3	0	0	3	3	3	0	CDC24	Calponin
Glycos_transf_1	PF00534.20	gi|410671717|ref|YP_006924088.1|	-	1e-34	119.6	0.0	2.3e-34	118.4	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|410671717|ref|YP_006924088.1|	-	2.4e-27	96.0	0.0	5.6e-27	94.8	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|410671717|ref|YP_006924088.1|	-	2.1e-17	63.7	0.0	3.3e-17	63.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|410671717|ref|YP_006924088.1|	-	1.3e-07	31.9	0.0	2.3e-07	31.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|410671717|ref|YP_006924088.1|	-	4.6e-06	26.7	2.7	8.4e-06	25.9	2.7	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
DUF4459	PF14673.6	gi|410671717|ref|YP_006924088.1|	-	0.27	11.1	2.3	19	5.1	0.0	2.6	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4459)
Polysacc_synt	PF01943.17	gi|410671718|ref|YP_006924089.1|	-	1.3e-27	96.9	34.9	1.3e-27	96.9	34.9	2.1	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.6	gi|410671718|ref|YP_006924089.1|	-	1.7e-16	60.3	20.5	1.7e-16	60.3	20.5	2.1	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
MatE	PF01554.18	gi|410671718|ref|YP_006924089.1|	-	7.9e-06	25.6	12.1	7.9e-06	25.6	12.1	3.8	2	2	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|410671718|ref|YP_006924089.1|	-	0.00018	21.6	64.6	0.0054	16.8	27.2	4.9	2	1	1	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
Glycos_transf_2	PF00535.26	gi|410671719|ref|YP_006924090.1|	-	3e-33	115.0	0.1	4.9e-33	114.3	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_2	PF10111.9	gi|410671719|ref|YP_006924090.1|	-	1.7e-11	44.1	2.6	2.9e-11	43.4	2.3	1.7	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_3	PF13641.6	gi|410671719|ref|YP_006924090.1|	-	1.6e-08	34.7	0.0	2.2e-08	34.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|410671719|ref|YP_006924090.1|	-	0.0013	19.2	0.3	0.0051	17.3	0.0	2.1	2	1	0	2	2	2	1	Glycosyl	transferase	family	2
DUF5001	PF16392.5	gi|410671719|ref|YP_006924090.1|	-	0.022	14.7	0.2	0.26	11.2	0.0	2.6	2	0	0	2	2	2	0	Ig-like	domain
YwiC	PF14256.6	gi|410671720|ref|YP_006924091.1|	-	0.00014	22.2	1.2	0.00014	22.2	1.2	4.0	4	2	0	5	5	5	1	YwiC-like	protein
Laminin_G_3	PF13385.6	gi|410671721|ref|YP_006924092.1|	-	3.7e-25	88.8	1.3	2.3e-24	86.3	0.4	2.8	2	0	0	2	2	2	1	Concanavalin	A-like	lectin/glucanases	superfamily
CBM_4_9	PF02018.17	gi|410671721|ref|YP_006924092.1|	-	5.1e-08	33.3	0.3	0.0065	16.7	0.0	2.8	2	0	0	2	2	2	2	Carbohydrate	binding	domain
CARDB	PF07705.11	gi|410671721|ref|YP_006924092.1|	-	8.2e-06	26.0	0.0	3.1e-05	24.2	0.0	2.0	1	0	0	1	1	1	1	CARDB
TRAP_beta	PF05753.14	gi|410671721|ref|YP_006924092.1|	-	0.07	12.5	0.2	0.3	10.5	0.0	2.0	3	0	0	3	3	3	0	Translocon-associated	protein	beta	(TRAPB)
ZU5	PF00791.20	gi|410671722|ref|YP_006924093.1|	-	0.045	14.1	0.0	0.1	12.9	0.0	1.5	1	0	0	1	1	1	0	ZU5	domain
Serglycin	PF04360.12	gi|410671722|ref|YP_006924093.1|	-	0.13	12.2	0.7	0.32	10.9	0.7	1.6	1	0	0	1	1	1	0	Serglycin
DUF4766	PF15973.5	gi|410671722|ref|YP_006924093.1|	-	5.4	7.6	11.1	25	5.5	0.3	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4766)
AhpC-TSA	PF00578.21	gi|410671723|ref|YP_006924094.1|	-	2.7e-19	69.3	0.0	3.1e-19	69.1	0.0	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|410671723|ref|YP_006924094.1|	-	2.6e-08	33.7	0.0	2.9e-08	33.5	0.0	1.0	1	0	0	1	1	1	1	Redoxin
SCO1-SenC	PF02630.14	gi|410671723|ref|YP_006924094.1|	-	0.027	14.4	0.0	0.032	14.1	0.0	1.1	1	0	0	1	1	1	0	SCO1/SenC
ABC_tran	PF00005.27	gi|410671724|ref|YP_006924095.1|	-	1.1e-22	81.0	0.0	1.5e-22	80.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|410671724|ref|YP_006924095.1|	-	2.3e-07	31.0	1.0	0.00011	22.1	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|410671724|ref|YP_006924095.1|	-	4.3e-05	23.0	0.1	6.9e-05	22.4	0.0	1.3	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|410671724|ref|YP_006924095.1|	-	0.0063	16.9	0.1	0.011	16.2	0.1	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|410671724|ref|YP_006924095.1|	-	0.024	14.5	0.1	0.064	13.2	0.0	1.7	2	0	0	2	2	2	0	RsgA	GTPase
SbcCD_C	PF13558.6	gi|410671724|ref|YP_006924095.1|	-	0.031	14.5	0.2	0.58	10.4	0.2	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
NB-ARC	PF00931.22	gi|410671724|ref|YP_006924095.1|	-	0.16	11.1	2.9	2.6	7.2	0.2	2.2	2	0	0	2	2	2	0	NB-ARC	domain
AAA_14	PF13173.6	gi|410671724|ref|YP_006924095.1|	-	0.18	11.9	0.6	4.5	7.3	0.0	2.2	1	1	0	2	2	2	0	AAA	domain
UPF0014	PF03649.13	gi|410671725|ref|YP_006924096.1|	-	4e-73	245.7	18.3	4.6e-73	245.5	18.3	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0014)
ABC2_membrane_5	PF13346.6	gi|410671725|ref|YP_006924096.1|	-	1.3	8.6	27.8	0.029	13.9	15.4	2.3	2	0	0	2	2	2	0	ABC-2	family	transporter	protein
DUF1638	PF07796.11	gi|410671726|ref|YP_006924097.1|	-	8.2e-41	139.8	0.0	9.9e-41	139.5	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1638)
DUF1328	PF07043.13	gi|410671727|ref|YP_006924098.1|	-	6.3e-15	55.1	15.5	8.2e-15	54.7	15.5	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1328)
SecG	PF03840.14	gi|410671727|ref|YP_006924098.1|	-	0.19	11.8	12.7	0.11	12.6	3.6	2.0	1	1	1	2	2	2	0	Preprotein	translocase	SecG	subunit
TraG_N	PF07916.11	gi|410671727|ref|YP_006924098.1|	-	3.2	6.5	8.7	3	6.6	8.7	1.0	1	0	0	1	1	1	0	TraG-like	protein,	N-terminal	region
DUF131	PF01998.17	gi|410671727|ref|YP_006924098.1|	-	7.2	6.3	17.4	1.4	8.6	5.4	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF131
Cupin_2	PF07883.11	gi|410671728|ref|YP_006924099.1|	-	2.5e-12	46.3	0.0	3e-12	46.0	0.0	1.1	1	0	0	1	1	1	1	Cupin	domain
Cupin_1	PF00190.22	gi|410671728|ref|YP_006924099.1|	-	0.0035	17.0	0.0	0.0042	16.7	0.0	1.1	1	0	0	1	1	1	1	Cupin
3-HAO	PF06052.12	gi|410671728|ref|YP_006924099.1|	-	0.0044	16.7	0.0	0.0056	16.3	0.0	1.2	1	1	0	1	1	1	1	3-hydroxyanthranilic	acid	dioxygenase
PCO_ADO	PF07847.12	gi|410671728|ref|YP_006924099.1|	-	0.062	12.7	0.0	0.062	12.7	0.0	1.1	1	0	0	1	1	1	0	PCO_ADO
AraC_binding	PF02311.19	gi|410671728|ref|YP_006924099.1|	-	0.082	12.8	0.0	0.092	12.6	0.0	1.1	1	0	0	1	1	1	0	AraC-like	ligand	binding	domain
GyrI-like	PF06445.15	gi|410671731|ref|YP_006924102.1|	-	7.1e-13	49.1	0.0	7.4e-13	49.1	0.0	1.0	1	0	0	1	1	1	1	GyrI-like	small	molecule	binding	domain
Na_H_Exchanger	PF00999.21	gi|410671732|ref|YP_006924103.1|	-	2.5e-67	227.4	52.2	3.1e-67	227.0	52.2	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
TrkA_N	PF02254.18	gi|410671732|ref|YP_006924103.1|	-	1.2e-23	83.5	1.4	1.7e-23	83.1	0.7	1.7	2	0	0	2	2	2	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|410671732|ref|YP_006924103.1|	-	5.9e-13	48.4	0.2	2.4e-12	46.5	0.0	2.3	3	0	0	3	3	3	1	TrkA-C	domain
DUF2842	PF11003.8	gi|410671732|ref|YP_006924103.1|	-	9.1	6.6	9.2	0.67	10.3	2.2	2.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2842)
MTH865	PF07747.11	gi|410671734|ref|YP_006924104.1|	-	1.5e-28	98.4	0.2	1.7e-28	98.2	0.2	1.0	1	0	0	1	1	1	1	MTH865-like	family
HTH_20	PF12840.7	gi|410671735|ref|YP_006924106.1|	-	1.1e-06	28.6	0.1	2.4e-06	27.5	0.1	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|410671735|ref|YP_006924106.1|	-	3.2e-05	23.7	0.1	6.4e-05	22.7	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|410671735|ref|YP_006924106.1|	-	0.013	15.0	0.0	0.028	14.0	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_34	PF13601.6	gi|410671735|ref|YP_006924106.1|	-	0.017	15.3	0.0	0.05	13.8	0.0	1.8	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|410671735|ref|YP_006924106.1|	-	0.019	14.9	0.0	0.045	13.7	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix
LppC	PF04348.13	gi|410671735|ref|YP_006924106.1|	-	0.022	13.6	0.1	0.039	12.8	0.1	1.3	1	0	0	1	1	1	0	LppC	putative	lipoprotein
PriX	PF18689.1	gi|410671735|ref|YP_006924106.1|	-	0.024	15.0	0.7	0.047	14.0	0.7	1.5	1	0	0	1	1	1	0	Primase	X
HEM4	PF02602.15	gi|410671736|ref|YP_006924107.1|	-	1.5e-26	93.2	0.0	1.7e-26	93.0	0.0	1.0	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
Peripla_BP_6	PF13458.6	gi|410671736|ref|YP_006924107.1|	-	0.0011	18.6	0.1	0.002	17.8	0.1	1.4	1	0	0	1	1	1	1	Periplasmic	binding	protein
RhlB	PF12300.8	gi|410671737|ref|YP_006924108.1|	-	0.0059	16.8	4.2	0.0066	16.6	4.2	1.0	1	0	0	1	1	1	1	ATP-dependent	RNA	helicase	RhlB
zinc_ribbon_6	PF14599.6	gi|410671737|ref|YP_006924108.1|	-	0.008	16.2	0.7	0.014	15.4	0.7	1.4	1	1	0	1	1	1	1	Zinc-ribbon
MS_channel	PF00924.18	gi|410671738|ref|YP_006924109.1|	-	5.5e-33	114.3	5.8	1.5e-32	112.9	5.8	1.7	1	1	0	1	1	1	1	Mechanosensitive	ion	channel
COX8	PF02285.15	gi|410671738|ref|YP_006924109.1|	-	0.015	15.2	0.1	0.038	13.9	0.1	1.6	1	0	0	1	1	1	0	Cytochrome	oxidase	c	subunit	VIII
Ceramidase	PF05875.12	gi|410671738|ref|YP_006924109.1|	-	0.53	9.7	6.7	0.96	8.8	6.7	1.4	1	0	0	1	1	1	0	Ceramidase
HAD_2	PF13419.6	gi|410671739|ref|YP_006924110.1|	-	1.7e-19	70.6	0.0	2.7e-19	69.9	0.0	1.5	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|410671739|ref|YP_006924110.1|	-	2.1e-10	40.5	0.0	3.3e-10	39.9	0.0	1.3	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.26	gi|410671739|ref|YP_006924110.1|	-	2.5e-10	41.0	0.0	6e-10	39.8	0.0	1.8	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Tnp_P_element	PF12017.8	gi|410671739|ref|YP_006924110.1|	-	0.036	13.5	0.0	0.046	13.2	0.0	1.2	1	0	0	1	1	1	0	Transposase	protein
Put_Phosphatase	PF06888.12	gi|410671739|ref|YP_006924110.1|	-	0.09	12.2	0.1	2.8	7.3	0.0	2.3	2	1	1	3	3	3	0	Putative	Phosphatase
APH	PF01636.23	gi|410671740|ref|YP_006924111.1|	-	7.1e-08	32.7	0.0	1.1e-07	32.1	0.0	1.2	1	0	0	1	1	1	1	Phosphotransferase	enzyme	family
RIO1	PF01163.22	gi|410671740|ref|YP_006924111.1|	-	0.00091	18.9	0.4	1.1	8.8	0.0	2.3	1	1	0	2	2	2	2	RIO1	family
Pkinase_Tyr	PF07714.17	gi|410671740|ref|YP_006924111.1|	-	0.01	15.2	0.9	0.018	14.3	0.1	1.8	2	1	1	3	3	3	1	Protein	tyrosine	kinase
EF1_GNE	PF00736.19	gi|410671742|ref|YP_006924113.1|	-	7.2e-19	67.8	0.1	8.2e-19	67.6	0.1	1.0	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
HMA	PF00403.26	gi|410671742|ref|YP_006924113.1|	-	0.015	15.8	0.5	0.057	13.9	0.1	1.9	2	0	0	2	2	2	0	Heavy-metal-associated	domain
AA_kinase	PF00696.28	gi|410671744|ref|YP_006924115.1|	-	6e-14	52.2	0.1	5.8e-07	29.3	0.0	2.1	1	1	0	2	2	2	2	Amino	acid	kinase	family
Hydantoinase_A	PF01968.18	gi|410671745|ref|YP_006924116.1|	-	3.7e-32	111.8	0.2	3.1e-31	108.7	0.0	1.9	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase
HAD	PF12710.7	gi|410671745|ref|YP_006924116.1|	-	9.5e-05	22.9	0.1	0.024	15.1	0.1	2.2	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
MutL	PF13941.6	gi|410671745|ref|YP_006924116.1|	-	0.0053	15.4	0.0	0.52	8.8	0.0	2.2	2	0	0	2	2	2	2	MutL	protein
FtsA	PF14450.6	gi|410671745|ref|YP_006924116.1|	-	0.18	12.2	0.7	19	5.8	0.1	2.8	2	2	0	2	2	2	0	Cell	division	protein	FtsA
Hydant_A_N	PF05378.13	gi|410671745|ref|YP_006924116.1|	-	0.35	10.6	3.0	17	5.1	0.4	3.1	2	2	0	2	2	2	0	Hydantoinase/oxoprolinase	N-terminal	region
ATP-grasp_3	PF02655.14	gi|410671746|ref|YP_006924117.1|	-	1e-39	136.2	0.0	1.3e-39	135.8	0.0	1.1	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.6	gi|410671746|ref|YP_006924117.1|	-	5.7e-06	26.1	0.0	1e-05	25.3	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
preATP-grasp_3	PF18301.1	gi|410671746|ref|YP_006924117.1|	-	0.00069	19.8	0.0	0.0018	18.5	0.0	1.7	1	0	0	1	1	1	1	pre	ATP-grasp	3	domain
ATPgrasp_ST	PF14397.6	gi|410671746|ref|YP_006924117.1|	-	0.0018	17.5	0.0	0.11	11.7	0.0	2.3	2	1	0	2	2	2	1	Sugar-transfer	associated	ATP-grasp
RimK	PF08443.11	gi|410671746|ref|YP_006924117.1|	-	0.003	17.2	0.0	0.026	14.1	0.0	2.1	2	0	0	2	2	2	1	RimK-like	ATP-grasp	domain
OST3_OST6	PF04756.13	gi|410671748|ref|YP_006924119.1|	-	0.051	12.9	5.3	0.083	12.2	5.3	1.5	1	1	0	1	1	1	0	OST3	/	OST6	family,	transporter	family
BCHF	PF07284.11	gi|410671748|ref|YP_006924119.1|	-	0.22	11.5	9.8	0.73	9.8	9.8	1.8	1	1	0	1	1	1	0	2-vinyl	bacteriochlorophyllide	hydratase	(BCHF)
Keratin_assoc	PF09775.9	gi|410671748|ref|YP_006924119.1|	-	0.83	9.3	9.0	0.21	11.3	5.8	1.6	1	1	1	2	2	2	0	Keratinocyte-associated	protein	2
SPT_ssu-like	PF11779.8	gi|410671748|ref|YP_006924119.1|	-	2.7	7.7	11.6	2.9	7.6	0.5	2.8	2	1	0	2	2	2	0	Small	subunit	of	serine	palmitoyltransferase-like
DUF2070	PF09843.9	gi|410671748|ref|YP_006924119.1|	-	5.9	5.1	9.8	7.5	4.7	9.8	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
DUF3169	PF11368.8	gi|410671748|ref|YP_006924119.1|	-	8.3	5.8	13.3	6.6	6.2	4.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3169)
GrpE	PF01025.19	gi|410671749|ref|YP_006924120.1|	-	2e-57	193.5	2.4	2.3e-57	193.2	2.4	1.0	1	0	0	1	1	1	1	GrpE
DUF148	PF02520.17	gi|410671749|ref|YP_006924120.1|	-	0.00022	21.3	2.2	0.0022	18.1	2.2	2.0	1	1	1	2	2	2	1	Domain	of	unknown	function	DUF148
GCIP	PF13324.6	gi|410671749|ref|YP_006924120.1|	-	0.095	12.3	1.2	0.13	11.9	1.2	1.2	1	0	0	1	1	1	0	Grap2	and	cyclin-D-interacting
GPAT_N	PF14829.6	gi|410671749|ref|YP_006924120.1|	-	0.1	12.6	0.0	0.2	11.7	0.0	1.5	1	0	0	1	1	1	0	Glycerol-3-phosphate	acyltransferase	N-terminal
EF-hand_2	PF09068.11	gi|410671749|ref|YP_006924120.1|	-	0.11	12.7	0.2	0.16	12.1	0.2	1.4	1	1	0	1	1	1	0	EF	hand
HSP70	PF00012.20	gi|410671750|ref|YP_006924121.1|	-	1.5e-246	819.4	14.8	1.2e-218	727.2	8.9	2.0	1	1	1	2	2	2	2	Hsp70	protein
MreB_Mbl	PF06723.13	gi|410671750|ref|YP_006924121.1|	-	6.4e-19	67.9	2.0	2.8e-18	65.8	2.0	2.1	1	1	0	1	1	1	1	MreB/Mbl	protein
FtsA	PF14450.6	gi|410671750|ref|YP_006924121.1|	-	7.6e-05	23.1	6.5	0.03	14.7	0.0	3.7	3	1	0	3	3	3	2	Cell	division	protein	FtsA
FGGY_C	PF02782.16	gi|410671750|ref|YP_006924121.1|	-	0.0085	15.8	0.0	0.02	14.6	0.0	1.7	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
HepII_C	PF18675.1	gi|410671750|ref|YP_006924121.1|	-	0.055	13.6	0.3	4.4	7.5	0.0	3.5	4	0	0	4	4	4	0	Heparinase	II	C-terminal	domain
DDE_Tnp_1_6	PF13751.6	gi|410671750|ref|YP_006924121.1|	-	1.1	9.5	2.5	1.3	9.3	1.1	1.8	2	0	0	2	2	2	0	Transposase	DDE	domain
Phage_connect_1	PF05135.13	gi|410671750|ref|YP_006924121.1|	-	1.6	9.3	5.6	16	6.0	1.0	3.4	3	1	0	3	3	3	0	Phage	gp6-like	head-tail	connector	protein
DnaJ_C	PF01556.18	gi|410671751|ref|YP_006924122.1|	-	1.3e-39	135.6	0.0	2e-39	135.0	0.0	1.3	1	0	0	1	1	1	1	DnaJ	C	terminal	domain
DnaJ	PF00226.31	gi|410671751|ref|YP_006924122.1|	-	7.3e-29	99.7	5.5	7.3e-29	99.7	5.5	1.9	3	0	0	3	3	3	1	DnaJ	domain
DnaJ_CXXCXGXG	PF00684.19	gi|410671751|ref|YP_006924122.1|	-	1.3e-15	57.5	14.2	2.5e-15	56.6	14.2	1.5	1	0	0	1	1	1	1	DnaJ	central	domain
Anti-TRAP	PF15777.5	gi|410671751|ref|YP_006924122.1|	-	0.0027	17.6	19.4	0.27	11.2	4.6	3.0	2	2	1	3	3	3	3	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
DUF5351	PF17302.2	gi|410671751|ref|YP_006924122.1|	-	0.073	13.3	22.2	1.1	9.5	2.8	4.5	4	0	0	4	4	4	0	Family	of	unknown	function	(DUF5351)
Octopine_DH	PF02317.17	gi|410671751|ref|YP_006924122.1|	-	0.13	12.3	0.2	0.26	11.4	0.2	1.4	1	0	0	1	1	1	0	NAD/NADP	octopine/nopaline	dehydrogenase,	alpha-helical	domain
TackOD1	PF18551.1	gi|410671751|ref|YP_006924122.1|	-	0.77	9.4	3.8	6.2	6.5	0.4	2.2	2	0	0	2	2	2	0	Thaumarchaeal	output	domain	1
TrkA_N	PF02254.18	gi|410671752|ref|YP_006924123.1|	-	2.2e-53	179.4	8.7	7.6e-28	97.1	0.4	2.5	2	0	0	2	2	2	2	TrkA-N	domain
TrkA_C	PF02080.21	gi|410671752|ref|YP_006924123.1|	-	2.8e-32	110.3	0.6	1.6e-15	56.7	0.0	3.3	3	0	0	3	3	3	2	TrkA-C	domain
Shikimate_DH	PF01488.20	gi|410671752|ref|YP_006924123.1|	-	1.3e-13	51.2	5.3	4.3e-07	30.1	1.2	2.5	2	0	0	2	2	2	2	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.17	gi|410671752|ref|YP_006924123.1|	-	1.9e-09	38.0	5.2	0.00089	19.8	0.5	3.5	3	1	0	3	3	3	2	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_7	PF13241.6	gi|410671752|ref|YP_006924123.1|	-	4.3e-09	36.8	6.4	0.0003	21.2	0.8	2.8	3	0	0	3	3	2	2	Putative	NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|410671752|ref|YP_006924123.1|	-	4e-08	32.8	6.3	0.00038	19.8	0.3	2.2	2	0	0	2	2	2	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
Sacchrp_dh_NADP	PF03435.18	gi|410671752|ref|YP_006924123.1|	-	4.3e-07	30.3	5.0	0.00043	20.6	0.8	2.8	2	1	0	2	2	2	2	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|410671752|ref|YP_006924123.1|	-	1e-05	25.6	0.7	0.15	12.0	0.0	2.6	2	0	0	2	2	2	2	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox_2	PF07992.14	gi|410671752|ref|YP_006924123.1|	-	1.2e-05	24.7	2.1	0.043	13.0	0.2	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|410671752|ref|YP_006924123.1|	-	2.9e-05	24.0	3.7	0.059	13.2	0.5	2.4	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Rossmann-like	PF10727.9	gi|410671752|ref|YP_006924123.1|	-	3e-05	23.9	0.8	0.021	14.7	0.4	2.6	2	0	0	2	2	2	2	Rossmann-like	domain
DAO	PF01266.24	gi|410671752|ref|YP_006924123.1|	-	6e-05	22.8	0.8	0.012	15.3	0.1	2.4	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
UDPG_MGDP_dh_N	PF03721.14	gi|410671752|ref|YP_006924123.1|	-	6.6e-05	22.6	2.8	0.032	13.8	0.3	2.7	2	0	0	2	2	2	2	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NmrA	PF05368.13	gi|410671752|ref|YP_006924123.1|	-	9.3e-05	22.1	4.8	0.039	13.5	1.0	2.4	2	0	0	2	2	2	2	NmrA-like	family
NAD_binding_2	PF03446.15	gi|410671752|ref|YP_006924123.1|	-	9.7e-05	22.6	0.9	0.56	10.4	0.1	2.7	2	0	0	2	2	2	2	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
XdhC_C	PF13478.6	gi|410671752|ref|YP_006924123.1|	-	9.9e-05	22.8	0.2	0.38	11.3	0.0	2.3	2	0	0	2	2	2	2	XdhC	Rossmann	domain
Pyr_redox	PF00070.27	gi|410671752|ref|YP_006924123.1|	-	0.0003	21.3	3.9	0.59	10.7	0.6	3.1	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|410671752|ref|YP_006924123.1|	-	0.00032	20.4	1.5	0.17	11.5	0.1	2.8	3	0	0	3	3	3	2	Ketopantoate	reductase	PanE/ApbA
NAD_binding_8	PF13450.6	gi|410671752|ref|YP_006924123.1|	-	0.00042	20.5	0.2	0.11	12.7	0.0	2.6	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_10	PF13460.6	gi|410671752|ref|YP_006924123.1|	-	0.00058	19.8	2.8	0.095	12.6	0.7	2.3	2	0	0	2	2	2	2	NAD(P)H-binding
FAD_binding_3	PF01494.19	gi|410671752|ref|YP_006924123.1|	-	0.0018	17.6	0.1	0.26	10.5	0.0	2.4	2	0	0	2	2	2	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|410671752|ref|YP_006924123.1|	-	0.0019	17.0	0.7	0.56	8.8	0.1	2.5	2	0	0	2	2	2	2	HI0933-like	protein
GFO_IDH_MocA	PF01408.22	gi|410671752|ref|YP_006924123.1|	-	0.0021	18.9	0.2	2.8	8.8	0.0	2.6	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
2-Hacid_dh_C	PF02826.19	gi|410671752|ref|YP_006924123.1|	-	0.0023	17.3	1.8	1.5	8.2	0.1	2.7	2	1	1	3	3	3	2	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DUF1188	PF06690.11	gi|410671752|ref|YP_006924123.1|	-	0.0028	17.2	7.2	0.27	10.7	0.1	3.0	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF1188)
PglD_N	PF17836.1	gi|410671752|ref|YP_006924123.1|	-	0.0053	17.4	6.4	0.48	11.1	0.4	2.8	2	0	0	2	2	2	2	PglD	N-terminal	domain
ADH_zinc_N	PF00107.26	gi|410671752|ref|YP_006924123.1|	-	0.0059	16.6	1.9	0.5	10.3	0.0	2.8	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
Trp_halogenase	PF04820.14	gi|410671752|ref|YP_006924123.1|	-	0.01	14.7	0.2	3	6.6	0.1	2.2	2	0	0	2	2	2	0	Tryptophan	halogenase
OCD_Mu_crystall	PF02423.15	gi|410671752|ref|YP_006924123.1|	-	0.03	13.2	1.1	0.9	8.4	0.0	2.2	2	0	0	2	2	2	0	Ornithine	cyclodeaminase/mu-crystallin	family
NAD_binding_9	PF13454.6	gi|410671752|ref|YP_006924123.1|	-	0.04	13.9	0.0	3.6	7.6	0.0	2.3	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Castor_Poll_mid	PF06241.12	gi|410671752|ref|YP_006924123.1|	-	0.092	12.7	0.1	12	6.0	0.0	2.6	2	0	0	2	2	2	0	Castor	and	Pollux,	part	of	voltage-gated	ion	channel
ThiF	PF00899.21	gi|410671752|ref|YP_006924123.1|	-	0.12	11.7	0.3	2.6	7.3	0.0	2.4	2	0	0	2	2	2	0	ThiF	family
TrkH	PF02386.16	gi|410671753|ref|YP_006924124.1|	-	6.8e-62	209.5	20.1	1.5e-61	208.4	20.1	1.5	1	1	0	1	1	1	1	Cation	transport	protein
Bac_export_2	PF01312.19	gi|410671753|ref|YP_006924124.1|	-	0.083	12.1	13.3	0.027	13.7	0.6	2.7	1	1	1	2	2	2	0	FlhB	HrpN	YscU	SpaS	Family
DUF5554	PF17709.1	gi|410671753|ref|YP_006924124.1|	-	0.15	12.2	0.0	0.44	10.7	0.0	1.7	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5554)
PufQ	PF05398.11	gi|410671753|ref|YP_006924124.1|	-	0.29	11.3	1.7	0.4	10.8	0.1	2.1	2	0	0	2	2	2	0	PufQ	cytochrome	subunit
FAD_binding_3	PF01494.19	gi|410671754|ref|YP_006924125.1|	-	5.5e-15	55.5	1.5	1.3e-05	24.6	0.0	3.0	3	0	0	3	3	3	2	FAD	binding	domain
FAD_binding_2	PF00890.24	gi|410671754|ref|YP_006924125.1|	-	3.6e-11	42.8	2.9	3.5e-08	32.9	0.4	2.2	1	1	0	2	2	2	2	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|410671754|ref|YP_006924125.1|	-	5.7e-10	39.1	3.5	2e-09	37.3	3.5	1.8	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|410671754|ref|YP_006924125.1|	-	6.9e-07	28.8	2.4	4.6e-06	26.1	2.5	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|410671754|ref|YP_006924125.1|	-	1.5e-06	27.5	0.2	0.00047	19.3	0.3	2.1	2	0	0	2	2	2	2	Lycopene	cyclase	protein
NAD_binding_8	PF13450.6	gi|410671754|ref|YP_006924125.1|	-	2.1e-06	27.9	0.0	7.4e-06	26.1	0.0	2.0	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|410671754|ref|YP_006924125.1|	-	2.3e-06	27.5	1.1	0.0013	18.4	0.4	2.2	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|410671754|ref|YP_006924125.1|	-	2.3e-06	26.6	0.5	4.2e-06	25.7	0.5	1.4	1	0	0	1	1	1	1	HI0933-like	protein
GIDA	PF01134.22	gi|410671754|ref|YP_006924125.1|	-	5.3e-06	25.8	0.2	2e-05	23.9	0.2	1.8	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|410671754|ref|YP_006924125.1|	-	1.1e-05	24.9	0.5	0.00015	21.1	0.1	2.1	2	0	0	2	2	2	1	Thi4	family
Trp_halogenase	PF04820.14	gi|410671754|ref|YP_006924125.1|	-	0.0016	17.4	0.3	0.39	9.5	0.0	2.2	1	1	1	2	2	2	2	Tryptophan	halogenase
Pyr_redox_3	PF13738.6	gi|410671754|ref|YP_006924125.1|	-	0.002	17.4	1.4	0.0026	17.1	0.5	1.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|410671754|ref|YP_006924125.1|	-	0.014	15.3	0.1	0.039	13.8	0.1	1.8	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|410671754|ref|YP_006924125.1|	-	0.038	13.3	0.0	0.073	12.3	0.0	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox	PF00070.27	gi|410671754|ref|YP_006924125.1|	-	0.081	13.5	0.1	0.081	13.5	0.1	2.7	3	0	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
SE	PF08491.10	gi|410671754|ref|YP_006924125.1|	-	0.19	10.8	0.2	0.44	9.6	0.1	1.6	2	0	0	2	2	2	0	Squalene	epoxidase
Fer4	PF00037.27	gi|410671755|ref|YP_006924126.1|	-	7.3e-15	54.1	16.6	2.3e-07	30.3	3.4	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|410671755|ref|YP_006924126.1|	-	3.7e-10	40.6	10.7	4.8e-05	24.2	0.7	2.1	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_7	PF12838.7	gi|410671755|ref|YP_006924126.1|	-	7.5e-10	39.3	25.2	1.8e-07	31.6	13.9	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410671755|ref|YP_006924126.1|	-	3.8e-09	36.2	14.7	2.5e-05	24.2	4.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|410671755|ref|YP_006924126.1|	-	1.3e-08	34.8	22.1	1.4e-06	28.3	12.5	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410671755|ref|YP_006924126.1|	-	3.4e-08	33.1	13.2	0.00032	20.6	2.4	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|410671755|ref|YP_006924126.1|	-	1.3e-07	31.6	13.6	0.00066	19.7	3.2	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410671755|ref|YP_006924126.1|	-	4.7e-07	29.8	13.5	5.4e-06	26.4	13.5	1.9	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|410671755|ref|YP_006924126.1|	-	4.2e-05	24.2	20.8	0.021	15.8	7.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|410671755|ref|YP_006924126.1|	-	8.2e-05	23.0	13.8	0.0058	17.1	1.7	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|410671755|ref|YP_006924126.1|	-	0.00019	21.9	11.4	0.029	14.9	3.1	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_4	PF12800.7	gi|410671755|ref|YP_006924126.1|	-	0.00044	20.6	16.3	0.019	15.5	3.7	2.3	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Desulfoferrod_N	PF06397.12	gi|410671755|ref|YP_006924126.1|	-	0.0016	18.0	1.7	0.0016	18.0	1.7	2.1	2	0	0	2	2	2	1	Desulfoferrodoxin,	N-terminal	domain
Fer4_17	PF13534.6	gi|410671755|ref|YP_006924126.1|	-	0.0048	17.4	13.6	0.18	12.4	3.2	2.1	1	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|410671755|ref|YP_006924126.1|	-	0.0093	16.2	12.4	0.13	12.5	2.6	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|410671755|ref|YP_006924126.1|	-	0.023	15.4	13.0	0.41	11.4	0.4	3.0	2	1	1	3	3	3	0	4Fe-4S	single	cluster	domain
Me-amine-dh_L	PF02975.14	gi|410671755|ref|YP_006924126.1|	-	0.028	14.9	0.7	0.028	14.9	0.7	2.0	1	1	1	2	2	2	0	Methylamine	dehydrogenase,	L	chain
Fer4_22	PF17179.4	gi|410671755|ref|YP_006924126.1|	-	2.6	8.9	15.4	3.5	8.6	3.9	2.1	1	1	2	3	3	2	0	4Fe-4S	dicluster	domain
Fer4_19	PF06902.11	gi|410671755|ref|YP_006924126.1|	-	3.8	7.7	11.6	1.7e+02	2.3	11.6	2.7	1	1	0	1	1	1	0	Divergent	4Fe-4S	mono-cluster
zf-BED	PF02892.15	gi|410671755|ref|YP_006924126.1|	-	7.8	6.6	7.8	3.9	7.6	1.2	2.1	2	0	0	2	2	2	0	BED	zinc	finger
CofC	PF01983.16	gi|410671756|ref|YP_006924127.1|	-	2.3e-50	170.8	0.2	2.7e-50	170.6	0.2	1.0	1	0	0	1	1	1	1	Guanylyl	transferase	CofC	like
NTP_transf_3	PF12804.7	gi|410671756|ref|YP_006924127.1|	-	0.00093	19.6	0.0	0.0011	19.4	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
DUF2064	PF09837.9	gi|410671756|ref|YP_006924127.1|	-	0.14	12.0	0.0	0.23	11.3	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
Radical_SAM	PF04055.21	gi|410671757|ref|YP_006924128.1|	-	1.2e-16	61.5	0.0	1.9e-16	60.9	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Radical_SAM	PF04055.21	gi|410671758|ref|YP_006924129.1|	-	4.3e-19	69.5	0.1	6.5e-19	68.9	0.1	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Radical_SAM	PF04055.21	gi|410671759|ref|YP_006924130.1|	-	3.3e-13	50.3	0.0	6.5e-13	49.4	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
Amino_oxidase	PF01593.24	gi|410671760|ref|YP_006924131.1|	-	3.5e-16	59.5	0.0	4.8e-16	59.1	0.0	1.1	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|410671760|ref|YP_006924131.1|	-	5e-12	45.9	0.1	1.4e-11	44.4	0.1	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|410671760|ref|YP_006924131.1|	-	4.7e-08	32.6	0.7	0.0024	17.2	0.0	3.2	3	0	0	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|410671760|ref|YP_006924131.1|	-	4.8e-05	22.6	1.4	0.0013	17.9	0.1	2.7	3	0	0	3	3	3	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|410671760|ref|YP_006924131.1|	-	0.00016	20.5	1.6	0.0028	16.4	0.1	2.1	2	0	0	2	2	2	1	HI0933-like	protein
DAO	PF01266.24	gi|410671760|ref|YP_006924131.1|	-	0.00033	20.4	0.2	0.14	11.7	0.1	2.1	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|410671760|ref|YP_006924131.1|	-	0.00079	19.9	2.0	0.011	16.3	0.2	3.1	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|410671760|ref|YP_006924131.1|	-	0.0027	17.1	0.1	0.0054	16.1	0.1	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|410671760|ref|YP_006924131.1|	-	0.04	13.0	0.4	0.092	11.8	0.0	1.7	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.19	gi|410671760|ref|YP_006924131.1|	-	0.05	12.8	1.1	0.1	11.8	0.2	2.0	3	0	0	3	3	3	0	FAD	binding	domain
NAD_binding_9	PF13454.6	gi|410671760|ref|YP_006924131.1|	-	0.69	9.9	4.7	1.8	8.5	0.1	2.7	3	0	0	3	3	3	0	FAD-NAD(P)-binding
Fer4	PF00037.27	gi|410671761|ref|YP_006924132.1|	-	8.7e-13	47.5	17.0	2.2e-06	27.2	2.5	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|410671761|ref|YP_006924132.1|	-	2.1e-09	37.2	16.0	0.00015	22.0	3.7	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|410671761|ref|YP_006924132.1|	-	1.2e-08	35.0	24.3	1.4e-06	28.3	13.4	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410671761|ref|YP_006924132.1|	-	2.3e-08	34.0	10.8	3.1e-08	33.6	10.8	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|410671761|ref|YP_006924132.1|	-	3.1e-08	34.1	12.8	0.00078	20.0	1.3	2.0	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410671761|ref|YP_006924132.1|	-	4.8e-07	29.6	15.9	0.0016	18.5	2.8	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|410671761|ref|YP_006924132.1|	-	5.3e-07	30.5	11.6	0.0016	19.4	3.9	2.0	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|410671761|ref|YP_006924132.1|	-	3.1e-06	26.9	13.6	0.0034	17.4	3.8	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|410671761|ref|YP_006924132.1|	-	3.7e-05	24.2	9.9	0.011	16.3	1.2	2.0	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410671761|ref|YP_006924132.1|	-	0.00034	20.7	15.3	0.013	15.6	15.9	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|410671761|ref|YP_006924132.1|	-	0.0011	19.3	15.5	0.024	15.0	4.1	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|410671761|ref|YP_006924132.1|	-	0.0016	19.3	11.7	0.057	14.3	2.2	2.0	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|410671761|ref|YP_006924132.1|	-	0.0089	16.6	14.0	0.21	12.2	1.9	2.4	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_3	PF12798.7	gi|410671761|ref|YP_006924132.1|	-	0.019	15.8	20.2	0.52	11.4	4.8	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
zf-C2H2_11	PF16622.5	gi|410671761|ref|YP_006924132.1|	-	1.8	8.4	8.3	0.57	10.0	0.6	2.2	2	0	0	2	2	2	0	zinc-finger	C2H2-type
Fer4_18	PF13746.6	gi|410671761|ref|YP_006924132.1|	-	1.8	8.8	12.4	12	6.1	12.5	1.8	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|410671761|ref|YP_006924132.1|	-	4.8	8.0	17.5	2	9.2	3.9	2.9	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
HTH_AsnC-type	PF13404.6	gi|410671762|ref|YP_006924133.1|	-	7.1e-12	44.9	0.0	1.1e-11	44.4	0.0	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|410671762|ref|YP_006924133.1|	-	4.5e-11	42.1	0.1	7.4e-11	41.4	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|410671762|ref|YP_006924133.1|	-	6.3e-08	32.5	0.0	1e-07	31.8	0.0	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_11	PF08279.12	gi|410671762|ref|YP_006924133.1|	-	0.00067	19.6	0.0	0.0015	18.5	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
MarR	PF01047.22	gi|410671762|ref|YP_006924133.1|	-	0.0063	16.4	0.0	0.013	15.4	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Fe_dep_repress	PF01325.19	gi|410671762|ref|YP_006924133.1|	-	0.0096	16.1	0.0	0.025	14.8	0.0	1.7	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Tospo_nucleocap	PF01533.16	gi|410671762|ref|YP_006924133.1|	-	0.023	14.2	0.1	0.034	13.6	0.1	1.4	1	1	0	1	1	1	0	Tospovirus	nucleocapsid	protein
HTH_IclR	PF09339.10	gi|410671762|ref|YP_006924133.1|	-	0.025	14.4	0.0	0.041	13.7	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_CodY	PF08222.11	gi|410671762|ref|YP_006924133.1|	-	0.029	13.9	0.0	0.065	12.8	0.0	1.6	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_20	PF12840.7	gi|410671762|ref|YP_006924133.1|	-	0.035	14.2	0.0	0.06	13.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF2250	PF10007.9	gi|410671762|ref|YP_006924133.1|	-	0.043	13.9	0.0	0.1	12.7	0.0	1.6	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_DeoR	PF08220.12	gi|410671762|ref|YP_006924133.1|	-	0.044	13.5	0.0	0.094	12.5	0.0	1.6	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
DUF188	PF02639.14	gi|410671762|ref|YP_006924133.1|	-	0.052	13.2	0.0	0.085	12.5	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	BCR,	YaiI/YqxD	family	COG1671
MarR_2	PF12802.7	gi|410671762|ref|YP_006924133.1|	-	0.084	12.8	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_Crp_2	PF13545.6	gi|410671762|ref|YP_006924133.1|	-	0.09	12.8	0.0	0.17	11.9	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|410671762|ref|YP_006924133.1|	-	0.099	12.5	0.0	0.21	11.5	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_10	PF04967.12	gi|410671762|ref|YP_006924133.1|	-	0.1	12.4	0.0	0.23	11.3	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
DUF22	PF01629.16	gi|410671763|ref|YP_006924134.1|	-	9.7e-38	128.1	0.5	1.4e-37	127.6	0.5	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF22
Tenui_NS4	PF03300.13	gi|410671763|ref|YP_006924134.1|	-	0.0048	16.4	0.0	0.0057	16.1	0.0	1.0	1	0	0	1	1	1	1	Tenuivirus	non-structural,	movement	protein	NS4
TF_Zn_Ribbon	PF08271.12	gi|410671764|ref|YP_006924135.1|	-	0.0058	16.1	10.5	0.16	11.5	0.7	3.1	2	1	0	2	2	2	2	TFIIB	zinc-binding
DUF35_N	PF12172.8	gi|410671764|ref|YP_006924135.1|	-	0.0066	16.3	1.6	2.4	8.1	0.1	3.0	3	0	0	3	3	3	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-C4_Topoisom	PF01396.19	gi|410671764|ref|YP_006924135.1|	-	0.0068	16.2	0.5	0.023	14.5	0.5	1.9	1	0	0	1	1	1	1	Topoisomerase	DNA	binding	C4	zinc	finger
DZR	PF12773.7	gi|410671764|ref|YP_006924135.1|	-	0.01	15.8	2.9	0.23	11.5	0.1	2.6	2	1	0	2	2	2	0	Double	zinc	ribbon
zf-piccolo	PF05715.13	gi|410671764|ref|YP_006924135.1|	-	0.016	15.3	4.1	0.66	10.2	0.3	2.4	2	0	0	2	2	2	0	Piccolo	Zn-finger
zf-ACC	PF17848.1	gi|410671764|ref|YP_006924135.1|	-	0.056	13.5	5.2	0.16	12.1	0.1	3.2	3	0	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf-ribbon_3	PF13248.6	gi|410671764|ref|YP_006924135.1|	-	0.86	9.1	12.5	0.89	9.1	0.1	3.6	4	0	0	4	4	4	0	zinc-ribbon	domain
zf-CHY	PF05495.12	gi|410671764|ref|YP_006924135.1|	-	1.2	9.7	7.5	1.7	9.2	1.6	2.6	2	1	0	2	2	2	0	CHY	zinc	finger
Ribosomal_L37ae	PF01780.19	gi|410671764|ref|YP_006924135.1|	-	1.2	9.3	4.6	11	6.2	0.4	2.4	2	0	0	2	2	2	0	Ribosomal	L37ae	protein	family
eIF-5_eIF-2B	PF01873.17	gi|410671764|ref|YP_006924135.1|	-	1.8	8.5	4.4	0.65	9.9	1.0	2.0	2	1	0	2	2	2	0	Domain	found	in	IF2B/IF5
Lar_restr_allev	PF14354.6	gi|410671764|ref|YP_006924135.1|	-	3.6	8.1	5.8	0.39	11.1	0.5	2.1	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
zf-C4	PF00105.18	gi|410671764|ref|YP_006924135.1|	-	8.9	6.9	9.9	0.54	10.8	1.8	2.7	2	2	0	2	2	2	0	Zinc	finger,	C4	type	(two	domains)
Prok-RING_2	PF14445.6	gi|410671764|ref|YP_006924135.1|	-	9.5	6.5	11.4	8.5	6.6	0.7	2.9	3	0	0	3	3	3	0	Prokaryotic	RING	finger	family	2
ABM	PF03992.16	gi|410671765|ref|YP_006924136.1|	-	0.00013	22.0	0.1	0.00018	21.5	0.1	1.4	1	1	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
Oxidored_q4	PF00507.19	gi|410671766|ref|YP_006924137.1|	-	3.6e-30	104.0	4.0	3.6e-30	104.0	4.0	1.4	1	1	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase,	chain	3
Oxidored_q6	PF01058.22	gi|410671767|ref|YP_006924138.1|	-	1.1e-22	80.2	0.0	1.5e-22	79.8	0.0	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Complex1_30kDa	PF00329.19	gi|410671768|ref|YP_006924139.1|	-	2e-34	118.9	0.0	3.2e-34	118.2	0.0	1.3	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
Complex1_49kDa	PF00346.19	gi|410671769|ref|YP_006924140.1|	-	3.7e-90	301.7	0.2	1.9e-88	296.1	0.2	2.1	1	1	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NiFeSe_Hases	PF00374.19	gi|410671769|ref|YP_006924140.1|	-	6.3e-09	35.3	0.0	8.2e-09	34.9	0.0	1.2	1	0	0	1	1	1	1	Nickel-dependent	hydrogenase
NADHdh	PF00146.21	gi|410671770|ref|YP_006924141.1|	-	7.6e-109	363.6	22.3	9e-109	363.4	22.3	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
V_ATPase_I	PF01496.19	gi|410671770|ref|YP_006924141.1|	-	3.1	5.6	4.0	4.5	5.1	4.0	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Fer4	PF00037.27	gi|410671771|ref|YP_006924142.1|	-	2.6e-14	52.4	15.6	3.6e-09	36.1	3.5	2.7	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|410671771|ref|YP_006924142.1|	-	7.7e-12	45.6	7.1	1.5e-11	44.7	7.1	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410671771|ref|YP_006924142.1|	-	2.8e-09	37.0	7.6	3.4e-09	36.7	6.6	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410671771|ref|YP_006924142.1|	-	6.5e-09	36.6	6.7	0.00022	22.1	1.5	2.5	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_10	PF13237.6	gi|410671771|ref|YP_006924142.1|	-	3.6e-08	33.4	9.3	3.6e-08	33.4	9.3	1.8	2	1	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410671771|ref|YP_006924142.1|	-	5.5e-08	32.8	9.3	1.1e-07	31.9	9.3	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410671771|ref|YP_006924142.1|	-	5.8e-07	29.2	8.3	7e-05	22.7	1.6	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|410671771|ref|YP_006924142.1|	-	3.8e-06	26.7	12.9	8.7e-05	22.4	5.0	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|410671771|ref|YP_006924142.1|	-	6e-06	26.6	9.6	3.5e-05	24.2	9.6	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410671771|ref|YP_006924142.1|	-	1.7e-05	25.0	9.4	0.0042	17.5	1.8	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|410671771|ref|YP_006924142.1|	-	3.6e-05	24.5	5.6	0.011	16.5	1.3	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410671771|ref|YP_006924142.1|	-	0.00055	20.4	12.6	0.01	16.3	11.0	2.4	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|410671771|ref|YP_006924142.1|	-	0.001	19.6	10.3	0.0023	18.5	2.5	2.5	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|410671771|ref|YP_006924142.1|	-	0.0023	18.6	8.9	0.0089	16.7	0.4	2.8	2	1	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.6	gi|410671771|ref|YP_006924142.1|	-	0.02	15.1	8.5	2.1	8.6	7.9	2.2	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|410671771|ref|YP_006924142.1|	-	0.18	12.8	3.0	0.18	12.8	3.0	3.0	4	0	0	4	4	2	0	4Fe-4S	binding	domain
Oxidored_q3	PF00499.20	gi|410671772|ref|YP_006924143.1|	-	1.7e-20	73.2	12.9	1.7e-20	73.2	12.9	1.7	1	1	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF3165	PF11364.8	gi|410671772|ref|YP_006924143.1|	-	0.19	12.1	14.8	0.38	11.1	14.8	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3165)
Peptidase_U4	PF03419.13	gi|410671772|ref|YP_006924143.1|	-	0.23	10.7	10.7	0.26	10.5	10.7	1.0	1	0	0	1	1	1	0	Sporulation	factor	SpoIIGA
Oxidored_q3	PF00499.20	gi|410671773|ref|YP_006924144.1|	-	7.7e-13	48.4	4.1	8.8e-13	48.2	4.1	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
Serinc	PF03348.15	gi|410671773|ref|YP_006924144.1|	-	0.29	10.0	1.8	0.32	9.9	1.8	1.1	1	0	0	1	1	1	0	Serine	incorporator	(Serinc)
OppC_N	PF12911.7	gi|410671773|ref|YP_006924144.1|	-	8	6.5	7.0	48	4.0	7.0	2.2	1	1	0	1	1	1	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Oxidored_q2	PF00420.24	gi|410671774|ref|YP_006924145.1|	-	2.4e-22	78.5	7.0	2.6e-22	78.4	7.0	1.0	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
Proton_antipo_M	PF00361.20	gi|410671775|ref|YP_006924146.1|	-	6.1e-76	255.4	28.2	6.1e-76	255.4	28.2	2.4	2	1	0	2	2	2	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|410671775|ref|YP_006924146.1|	-	3.2e-17	62.3	2.6	3.2e-17	62.3	2.6	4.6	6	0	0	6	6	6	2	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Proton_antipo_C	PF01010.19	gi|410671775|ref|YP_006924146.1|	-	0.0095	15.6	0.9	0.03	13.9	0.9	1.8	1	1	0	1	1	1	1	NADH-dehyrogenase	subunit	F,	TMs,	(complex	I)	C-terminus
DUF1290	PF06947.12	gi|410671775|ref|YP_006924146.1|	-	4.7	7.4	13.7	0.63	10.2	0.1	5.0	5	0	0	5	5	5	0	Protein	of	unknown	function	(DUF1290)
Proton_antipo_M	PF00361.20	gi|410671776|ref|YP_006924147.1|	-	7.9e-69	232.1	31.1	7.9e-69	232.1	31.1	2.1	2	1	0	3	3	3	1	Proton-conducting	membrane	transporter
Proton_antipo_M	PF00361.20	gi|410671777|ref|YP_006924148.1|	-	1.5e-69	234.4	31.7	1.5e-69	234.4	31.7	2.3	2	1	1	3	3	3	1	Proton-conducting	membrane	transporter
GET2	PF08690.10	gi|410671777|ref|YP_006924148.1|	-	0.038	13.7	2.9	0.068	12.8	2.9	1.4	1	0	0	1	1	1	0	GET	complex	subunit	GET2
FpoO	PF10621.9	gi|410671778|ref|YP_006924149.1|	-	6.7e-51	171.2	1.7	7.7e-51	171.0	1.7	1.0	1	0	0	1	1	1	1	F420H2	dehydrogenase	subunit	FpoO
DUF3268	PF11672.8	gi|410671778|ref|YP_006924149.1|	-	0.042	14.2	1.2	0.77	10.1	0.1	2.1	1	1	1	2	2	2	0	zinc-finger-containing	domain
DUF4428	PF14471.6	gi|410671778|ref|YP_006924149.1|	-	0.86	9.6	6.1	1.7	8.7	0.0	3.3	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4428)
DUF2795	PF11387.8	gi|410671779|ref|YP_006924150.1|	-	1.1e-11	44.8	0.1	1.8e-11	44.0	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2795)
Spt20	PF12090.8	gi|410671779|ref|YP_006924150.1|	-	0.0023	17.6	0.2	0.0025	17.5	0.2	1.0	1	0	0	1	1	1	1	Spt20	family
DIOX_N	PF14226.6	gi|410671779|ref|YP_006924150.1|	-	0.046	14.5	0.0	0.055	14.2	0.0	1.3	1	1	0	1	1	1	0	non-haem	dioxygenase	in	morphine	synthesis	N-terminal
DUF5615	PF18480.1	gi|410671779|ref|YP_006924150.1|	-	0.072	12.9	0.1	2	8.3	0.0	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5615)
Gp_dh_C	PF02800.20	gi|410671779|ref|YP_006924150.1|	-	0.18	11.4	0.3	0.21	11.2	0.3	1.1	1	0	0	1	1	1	0	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
Ion_trans	PF00520.31	gi|410671780|ref|YP_006924151.1|	-	5.1e-09	35.7	13.3	7.3e-09	35.2	13.3	1.1	1	0	0	1	1	1	1	Ion	transport	protein
Ion_trans_2	PF07885.16	gi|410671780|ref|YP_006924151.1|	-	6.7e-05	22.8	10.0	6.7e-05	22.8	10.0	1.8	2	0	0	2	2	2	1	Ion	channel
Lig_chan	PF00060.26	gi|410671780|ref|YP_006924151.1|	-	0.0036	17.1	0.1	0.008	16.0	0.1	1.6	1	0	0	1	1	1	1	Ligand-gated	ion	channel
HisKA	PF00512.25	gi|410671780|ref|YP_006924151.1|	-	0.15	12.1	0.7	0.48	10.5	0.1	2.0	2	0	0	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
DUF2070	PF09843.9	gi|410671780|ref|YP_006924151.1|	-	4	5.6	7.9	4.6	5.4	7.9	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
PRC	PF05239.16	gi|410671782|ref|YP_006924153.1|	-	2.3e-17	62.9	0.1	5e-17	61.7	0.1	1.6	1	0	0	1	1	1	1	PRC-barrel	domain
Hemerythrin	PF01814.23	gi|410671782|ref|YP_006924153.1|	-	7.3e-13	49.3	4.7	1.1e-12	48.7	4.7	1.3	1	0	0	1	1	1	1	Hemerythrin	HHE	cation	binding	domain
DUF3198	PF11433.8	gi|410671782|ref|YP_006924153.1|	-	0.041	13.8	0.1	0.12	12.2	0.1	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3198)
PRC	PF05239.16	gi|410671783|ref|YP_006924154.1|	-	8.8e-17	61.0	0.4	1.5e-16	60.2	0.4	1.4	1	0	0	1	1	1	1	PRC-barrel	domain
Hemerythrin	PF01814.23	gi|410671783|ref|YP_006924154.1|	-	2.9e-13	50.6	5.8	4.9e-13	49.8	5.8	1.4	1	0	0	1	1	1	1	Hemerythrin	HHE	cation	binding	domain
GntP_permease	PF02447.16	gi|410671784|ref|YP_006924155.1|	-	8.3e-55	186.2	41.1	1.1e-54	185.9	41.1	1.1	1	0	0	1	1	1	1	GntP	family	permease
Pox_G7	PF05503.12	gi|410671784|ref|YP_006924155.1|	-	0.085	11.8	0.2	11	4.8	0.0	2.2	2	0	0	2	2	2	0	Poxvirus	G7-like
GntP_permease	PF02447.16	gi|410671786|ref|YP_006924157.1|	-	3.9e-11	42.3	9.1	4.4e-11	42.1	9.1	1.0	1	0	0	1	1	1	1	GntP	family	permease
Na_H_antiport_2	PF13726.6	gi|410671786|ref|YP_006924157.1|	-	0.17	12.1	5.3	0.25	11.5	5.3	1.4	1	1	0	1	1	1	0	Na+-H+	antiporter	family
OAD_gamma	PF04277.13	gi|410671786|ref|YP_006924157.1|	-	0.45	11.1	0.2	0.45	11.1	0.2	2.2	2	0	0	2	2	2	0	Oxaloacetate	decarboxylase,	gamma	chain
CheC	PF04509.12	gi|410671790|ref|YP_006924161.1|	-	1.4e-15	56.8	0.7	2.4e-08	33.8	0.1	2.3	2	0	0	2	2	2	2	CheC-like	family
CheX	PF13690.6	gi|410671790|ref|YP_006924161.1|	-	1.6e-09	37.8	0.5	1e-07	32.0	0.1	2.3	2	0	0	2	2	2	2	Chemotaxis	phosphatase	CheX
DUF3795	PF12675.7	gi|410671791|ref|YP_006924162.1|	-	0.00018	21.9	17.4	0.0008	19.8	17.4	1.9	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3795)
DUF998	PF06197.13	gi|410671791|ref|YP_006924162.1|	-	0.021	14.4	3.5	0.036	13.6	3.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF998)
CheD	PF03975.13	gi|410671792|ref|YP_006924163.1|	-	4.1e-36	123.4	0.1	4.7e-36	123.2	0.1	1.0	1	0	0	1	1	1	1	CheD	chemotactic	sensory	transduction
CheC	PF04509.12	gi|410671793|ref|YP_006924164.1|	-	2e-18	66.0	1.1	1.9e-08	34.1	0.4	2.3	2	0	0	2	2	2	2	CheC-like	family
CheX	PF13690.6	gi|410671793|ref|YP_006924164.1|	-	3.2e-10	40.0	1.9	5.1e-06	26.6	0.1	2.6	2	1	1	3	3	3	2	Chemotaxis	phosphatase	CheX
CheC	PF04509.12	gi|410671794|ref|YP_006924165.1|	-	2.4e-22	78.6	0.3	5.7e-12	45.3	0.1	2.3	2	0	0	2	2	2	2	CheC-like	family
CheX	PF13690.6	gi|410671794|ref|YP_006924165.1|	-	1.3e-14	54.1	1.6	7.1e-10	38.9	0.2	2.3	2	0	0	2	2	2	2	Chemotaxis	phosphatase	CheX
DUF1874	PF08960.10	gi|410671794|ref|YP_006924165.1|	-	0.084	13.0	0.0	0.32	11.1	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1874)
CheR	PF01739.18	gi|410671795|ref|YP_006924166.1|	-	2.2e-52	177.4	0.0	3.1e-52	176.9	0.0	1.2	1	0	0	1	1	1	1	CheR	methyltransferase,	SAM	binding	domain
CheR_N	PF03705.15	gi|410671795|ref|YP_006924166.1|	-	1.6e-12	46.9	0.4	2.6e-12	46.3	0.4	1.3	1	0	0	1	1	1	1	CheR	methyltransferase,	all-alpha	domain
Methyltransf_12	PF08242.12	gi|410671795|ref|YP_006924166.1|	-	0.00077	20.2	0.1	0.011	16.5	0.1	2.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|410671795|ref|YP_006924166.1|	-	0.013	15.3	0.1	3.9	7.3	0.0	2.2	2	0	0	2	2	2	0	Methyltransferase	domain
PA28_beta	PF02252.18	gi|410671795|ref|YP_006924166.1|	-	0.022	14.4	0.1	0.042	13.5	0.1	1.4	1	0	0	1	1	1	0	Proteasome	activator	pa28	beta	subunit
Methyltransf_25	PF13649.6	gi|410671795|ref|YP_006924166.1|	-	0.032	14.9	0.0	2.7	8.7	0.0	2.6	1	1	0	1	1	1	0	Methyltransferase	domain
STIMATE	PF12400.8	gi|410671795|ref|YP_006924166.1|	-	0.055	14.0	0.0	0.096	13.2	0.0	1.4	1	0	0	1	1	1	0	STIMATE	family
PilM_2	PF11104.8	gi|410671796|ref|YP_006924167.1|	-	6.1e-10	38.6	1.5	0.00068	18.8	0.5	2.9	3	0	0	3	3	3	2	Type	IV	pilus	assembly	protein	PilM;
ThiS	PF02597.20	gi|410671796|ref|YP_006924167.1|	-	1.8e-06	28.5	3.3	0.94	10.2	0.0	6.1	4	2	1	6	6	6	2	ThiS	family
FtsA	PF14450.6	gi|410671796|ref|YP_006924167.1|	-	2.1e-06	28.1	5.1	4.1e-06	27.2	0.6	2.7	2	1	0	2	2	2	1	Cell	division	protein	FtsA
MreB_Mbl	PF06723.13	gi|410671796|ref|YP_006924167.1|	-	4.1e-06	25.8	8.1	0.0011	17.9	6.1	3.3	2	1	0	2	2	2	1	MreB/Mbl	protein
Ub-Mut7C	PF14451.6	gi|410671796|ref|YP_006924167.1|	-	1e-05	25.3	0.8	0.54	10.1	0.0	5.4	4	1	2	6	6	6	1	Mut7-C	ubiquitin
DDR	PF08841.10	gi|410671796|ref|YP_006924167.1|	-	0.00035	19.7	0.6	0.00093	18.3	0.1	2.0	2	0	0	2	2	2	1	Diol	dehydratase	reactivase	ATPase-like	domain
SrfB	PF07520.11	gi|410671796|ref|YP_006924167.1|	-	0.11	10.4	0.1	0.17	9.8	0.1	1.2	1	0	0	1	1	1	0	Virulence	factor	SrfB
Receptor_IA-2	PF11548.8	gi|410671796|ref|YP_006924167.1|	-	0.5	10.4	3.1	4.4	7.3	0.2	3.6	4	0	0	4	4	4	0	Protein-tyrosine	phosphatase	receptor	IA-2
HTH_15	PF12324.8	gi|410671796|ref|YP_006924167.1|	-	1.2	9.2	5.7	1.4	9.0	0.1	3.2	3	0	0	3	3	3	0	Helix-turn-helix	domain	of	alkylmercury	lyase
CheC	PF04509.12	gi|410671797|ref|YP_006924168.1|	-	2.4e-06	27.3	0.0	1.6e-05	24.7	0.1	2.2	2	0	0	2	2	2	1	CheC-like	family
CheX	PF13690.6	gi|410671797|ref|YP_006924168.1|	-	0.011	15.9	0.1	0.027	14.6	0.1	1.7	1	1	1	2	2	2	0	Chemotaxis	phosphatase	CheX
Radical_SAM	PF04055.21	gi|410671797|ref|YP_006924168.1|	-	0.14	12.5	0.0	0.21	11.9	0.0	1.2	1	0	0	1	1	1	0	Radical	SAM	superfamily
CheW	PF01584.19	gi|410671798|ref|YP_006924169.1|	-	9.4e-26	90.1	1.5	1.9e-25	89.1	1.5	1.6	1	0	0	1	1	1	1	CheW-like	domain
P2	PF07194.11	gi|410671798|ref|YP_006924169.1|	-	5e-23	80.9	2.0	1.8e-22	79.2	2.0	2.1	1	0	0	1	1	1	1	P2	response	regulator	binding	domain
Hpt	PF01627.23	gi|410671798|ref|YP_006924169.1|	-	1.5e-18	66.8	0.2	4.6e-18	65.3	0.2	1.9	1	0	0	1	1	1	1	Hpt	domain
H-kinase_dim	PF02895.14	gi|410671798|ref|YP_006924169.1|	-	4e-17	62.4	4.8	4e-17	62.4	4.8	2.3	2	0	0	2	2	2	1	Signal	transducing	histidine	kinase,	homodimeric	domain
HATPase_c	PF02518.26	gi|410671798|ref|YP_006924169.1|	-	1.4e-15	57.8	1.0	5.9e-15	55.7	0.1	2.5	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Snf7	PF03357.21	gi|410671798|ref|YP_006924169.1|	-	0.0013	18.4	2.7	0.0013	18.4	2.7	2.5	2	0	0	2	2	2	1	Snf7
HATPase_c_3	PF13589.6	gi|410671798|ref|YP_006924169.1|	-	0.0033	17.3	0.0	0.008	16.0	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|410671798|ref|YP_006924169.1|	-	0.027	14.4	0.2	0.22	11.5	0.0	2.4	2	0	0	2	2	2	0	Histidine	kinase-like	ATPase	domain
AnfO_nitrog	PF09582.10	gi|410671798|ref|YP_006924169.1|	-	0.057	12.8	0.1	0.16	11.3	0.0	1.7	2	0	0	2	2	2	0	Iron	only	nitrogenase	protein	AnfO	(AnfO_nitrog)
VPS28	PF03997.12	gi|410671798|ref|YP_006924169.1|	-	0.13	11.9	2.7	1.2	8.8	0.3	2.4	2	0	0	2	2	2	0	VPS28	protein
CheB_methylest	PF01339.17	gi|410671799|ref|YP_006924170.1|	-	1.5e-59	200.5	0.3	4.7e-59	198.9	0.2	1.8	2	0	0	2	2	2	1	CheB	methylesterase
Response_reg	PF00072.24	gi|410671799|ref|YP_006924170.1|	-	2.4e-23	82.4	0.1	6.3e-23	81.1	0.1	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Response_reg	PF00072.24	gi|410671800|ref|YP_006924171.1|	-	6.8e-30	103.5	1.5	7.5e-30	103.4	1.5	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
B12-binding	PF02310.19	gi|410671800|ref|YP_006924171.1|	-	0.052	13.6	0.0	0.077	13.0	0.0	1.2	1	0	0	1	1	1	0	B12	binding	domain
Pectate_lyase_2	PF06917.12	gi|410671800|ref|YP_006924171.1|	-	0.091	11.3	0.0	0.11	11.1	0.0	1.1	1	0	0	1	1	1	0	Periplasmic	pectate	lyase
Trm112p	PF03966.16	gi|410671803|ref|YP_006924174.1|	-	4.4e-12	46.4	1.9	8.9e-12	45.4	1.9	1.5	1	1	0	1	1	1	1	Trm112p-like	protein
Cys_rich_KTR	PF14205.6	gi|410671803|ref|YP_006924174.1|	-	0.00072	19.3	3.9	0.003	17.3	3.9	1.8	1	1	0	1	1	1	1	Cysteine-rich	KTR
TF_Zn_Ribbon	PF08271.12	gi|410671803|ref|YP_006924174.1|	-	0.0044	16.5	0.7	1.7	8.2	0.0	2.1	2	0	0	2	2	2	2	TFIIB	zinc-binding
Elf1	PF05129.13	gi|410671803|ref|YP_006924174.1|	-	0.0062	16.6	0.0	0.0066	16.5	0.0	1.1	1	0	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
Lar_restr_allev	PF14354.6	gi|410671803|ref|YP_006924174.1|	-	0.0065	16.8	0.3	0.0075	16.6	0.3	1.1	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
C1_4	PF07975.12	gi|410671803|ref|YP_006924174.1|	-	0.015	15.5	0.1	0.019	15.2	0.1	1.2	1	0	0	1	1	1	0	TFIIH	C1-like	domain
CK_II_beta	PF01214.18	gi|410671803|ref|YP_006924174.1|	-	0.024	14.5	0.2	0.025	14.4	0.2	1.0	1	0	0	1	1	1	0	Casein	kinase	II	regulatory	subunit
zf-RRPl_C4	PF17026.5	gi|410671803|ref|YP_006924174.1|	-	0.025	14.7	0.9	0.056	13.6	0.9	1.6	1	1	0	1	1	1	0	Putative	ribonucleoprotein	zinc-finger	pf	C4	type
zf-TFIIB	PF13453.6	gi|410671803|ref|YP_006924174.1|	-	0.026	13.9	0.5	5.1	6.5	0.0	2.2	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
zf-ribbon_3	PF13248.6	gi|410671803|ref|YP_006924174.1|	-	0.027	13.9	2.1	1.1	8.8	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Anti-TRAP	PF15777.5	gi|410671803|ref|YP_006924174.1|	-	0.041	13.8	2.1	3.5	7.7	0.1	2.1	1	1	1	2	2	2	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
A2L_zn_ribbon	PF08792.10	gi|410671803|ref|YP_006924174.1|	-	0.048	13.4	2.0	0.74	9.6	2.0	2.1	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
zf-UDP	PF14569.6	gi|410671803|ref|YP_006924174.1|	-	0.073	13.2	0.5	0.19	11.9	0.5	1.7	1	1	0	1	1	1	0	Zinc-binding	RING-finger
PADR1	PF08063.12	gi|410671803|ref|YP_006924174.1|	-	0.075	12.8	0.5	5	7.0	0.0	2.1	2	0	0	2	2	2	0	PADR1	(NUC008)	domain
DUF3797	PF12677.7	gi|410671803|ref|YP_006924174.1|	-	0.08	12.8	5.0	0.45	10.4	0.1	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
zf_UBZ	PF18439.1	gi|410671803|ref|YP_006924174.1|	-	0.17	11.5	0.6	0.97	9.1	0.1	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_9	PF14369.6	gi|410671803|ref|YP_006924174.1|	-	0.24	11.7	2.3	6.7	7.1	0.2	2.1	1	1	1	2	2	2	0	zinc-ribbon
zf_C2H2_10	PF18414.1	gi|410671803|ref|YP_006924174.1|	-	0.66	9.6	5.8	2	8.0	2.2	2.4	2	0	0	2	2	2	0	C2H2	type	zinc-finger
Zn-C2H2_12	PF18112.1	gi|410671803|ref|YP_006924174.1|	-	2.9	8.4	7.9	13	6.4	1.9	2.2	2	0	0	2	2	2	0	Autophagy	receptor	zinc	finger-C2H2	domain
CTP_synth_N	PF06418.14	gi|410671805|ref|YP_006924176.1|	-	4.2e-125	416.4	0.3	5.7e-125	416.0	0.3	1.2	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.28	gi|410671805|ref|YP_006924176.1|	-	3.7e-55	186.7	0.0	6.7e-55	185.8	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|410671805|ref|YP_006924176.1|	-	2.2e-05	24.3	0.0	0.00034	20.4	0.0	2.7	1	1	1	2	2	2	1	Peptidase	C26
CbiA	PF01656.23	gi|410671805|ref|YP_006924176.1|	-	6.3e-05	23.0	0.0	0.00048	20.2	0.0	2.3	2	1	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|410671805|ref|YP_006924176.1|	-	0.081	12.8	0.2	0.31	10.9	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
MeaB	PF03308.16	gi|410671805|ref|YP_006924176.1|	-	0.12	11.3	0.2	0.22	10.5	0.2	1.3	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Wyosine_form	PF08608.12	gi|410671805|ref|YP_006924176.1|	-	0.14	12.5	0.1	0.81	10.1	0.0	2.3	2	0	0	2	2	2	0	Wyosine	base	formation
TruD	PF01142.18	gi|410671806|ref|YP_006924177.1|	-	1.6e-163	544.4	0.0	1.8e-163	544.2	0.0	1.0	1	0	0	1	1	1	1	tRNA	pseudouridine	synthase	D	(TruD)
IMS_HHH	PF11798.8	gi|410671806|ref|YP_006924177.1|	-	0.14	12.5	0.0	0.5	10.8	0.0	2.0	1	0	0	1	1	1	0	IMS	family	HHH	motif
Transglut_core	PF01841.19	gi|410671807|ref|YP_006924178.1|	-	0.00027	21.4	0.0	0.00051	20.5	0.0	1.5	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
DUF553	PF04473.12	gi|410671807|ref|YP_006924178.1|	-	0.069	12.7	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	Transglutaminase-like	domain
PTH2	PF01981.16	gi|410671808|ref|YP_006924179.1|	-	7.6e-39	132.6	0.0	8.5e-39	132.5	0.0	1.0	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
RimK	PF08443.11	gi|410671809|ref|YP_006924180.1|	-	6.1e-26	91.2	0.0	1e-25	90.5	0.0	1.3	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|410671809|ref|YP_006924180.1|	-	1.9e-15	56.7	0.0	4.9e-15	55.4	0.0	1.7	1	1	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
Rimk_N	PF18030.1	gi|410671809|ref|YP_006924180.1|	-	9.1e-08	32.4	0.0	1.6e-07	31.6	0.0	1.4	1	0	0	1	1	1	1	RimK	PreATP-grasp	domain
ATPgrasp_YheCD	PF14398.6	gi|410671809|ref|YP_006924180.1|	-	1.1e-05	24.8	0.0	0.00023	20.5	0.0	2.4	1	1	1	2	2	2	1	YheC/D	like	ATP-grasp
ATP-grasp_3	PF02655.14	gi|410671809|ref|YP_006924180.1|	-	9e-05	22.6	0.0	0.00032	20.8	0.0	1.8	1	1	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|410671809|ref|YP_006924180.1|	-	0.0003	20.1	0.0	0.048	12.9	0.0	2.2	2	0	0	2	2	2	2	Sugar-transfer	associated	ATP-grasp
DUF5616	PF18481.1	gi|410671810|ref|YP_006924181.1|	-	2.9e-43	147.6	0.2	3.6e-43	147.3	0.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5616)
DUF434	PF04256.12	gi|410671810|ref|YP_006924181.1|	-	1.9e-19	69.1	0.1	4.9e-19	67.8	0.1	1.8	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF434)
DUF5371	PF17341.2	gi|410671810|ref|YP_006924181.1|	-	0.097	12.9	0.0	9.9	6.5	0.0	2.3	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5371)
DUF835	PF05763.12	gi|410671811|ref|YP_006924182.1|	-	9.3e-43	145.2	0.0	2.2e-42	144.0	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF835)
Response_reg	PF00072.24	gi|410671811|ref|YP_006924182.1|	-	6.6e-28	97.1	0.4	1.6e-27	95.9	0.4	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_9	PF13426.7	gi|410671811|ref|YP_006924182.1|	-	2e-10	40.8	0.1	6.9e-06	26.3	0.0	2.6	2	0	0	2	2	2	2	PAS	domain
PAS_4	PF08448.10	gi|410671811|ref|YP_006924182.1|	-	1.7e-09	37.9	0.0	0.0027	17.9	0.0	3.0	2	1	0	2	2	2	2	PAS	fold
PAS	PF00989.25	gi|410671811|ref|YP_006924182.1|	-	2.3e-08	34.0	0.0	0.0022	18.0	0.0	2.8	2	1	0	2	2	2	2	PAS	fold
PAS_8	PF13188.7	gi|410671811|ref|YP_006924182.1|	-	0.0031	17.5	1.5	0.47	10.5	0.0	3.6	3	1	0	3	3	3	1	PAS	domain
PAS_10	PF13596.6	gi|410671811|ref|YP_006924182.1|	-	0.043	14.4	0.0	0.1	13.2	0.0	1.6	1	0	0	1	1	1	0	PAS	domain
ATPase	PF06745.13	gi|410671812|ref|YP_006924183.1|	-	2.5e-32	112.1	0.0	3.7e-32	111.5	0.0	1.1	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|410671812|ref|YP_006924183.1|	-	3.5e-08	33.2	0.0	6.2e-08	32.4	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AMP-binding	PF00501.28	gi|410671813|ref|YP_006924184.1|	-	1.3e-15	56.9	0.0	1.8e-15	56.5	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
SIS_2	PF13580.6	gi|410671813|ref|YP_006924184.1|	-	0.0045	17.0	0.0	0.013	15.5	0.0	1.7	2	0	0	2	2	2	1	SIS	domain
Thioredox_DsbH	PF03190.15	gi|410671814|ref|YP_006924185.1|	-	1.2e-77	259.5	0.0	2.2e-77	258.6	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.6	gi|410671814|ref|YP_006924185.1|	-	1.2e-11	44.6	0.0	2.7e-11	43.5	0.0	1.6	1	0	0	1	1	1	1	Thioredoxin-like
Glyco_hydro_88	PF07470.13	gi|410671814|ref|YP_006924185.1|	-	1e-05	24.8	0.4	0.0037	16.4	0.1	2.3	2	0	0	2	2	2	2	Glycosyl	Hydrolase	Family	88
GlcNAc_2-epim	PF07221.11	gi|410671814|ref|YP_006924185.1|	-	0.00024	20.5	0.1	0.078	12.2	0.1	2.5	2	0	0	2	2	2	2	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
Glyco_hydro_9	PF00759.19	gi|410671814|ref|YP_006924185.1|	-	0.036	13.5	0.2	0.34	10.3	0.0	2.0	1	1	1	3	3	3	0	Glycosyl	hydrolase	family	9
Thioredoxin_2	PF13098.6	gi|410671814|ref|YP_006924185.1|	-	0.037	14.5	0.0	0.075	13.5	0.0	1.5	1	0	0	1	1	1	0	Thioredoxin-like	domain
LANC_like	PF05147.13	gi|410671814|ref|YP_006924185.1|	-	0.054	12.1	0.3	4.2	5.9	0.0	3.6	4	1	0	4	4	4	0	Lanthionine	synthetase	C-like	protein
Glyco_hydro_76	PF03663.14	gi|410671814|ref|YP_006924185.1|	-	0.093	12.2	0.0	2.8	7.4	0.0	2.4	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	76
Rubrerythrin	PF02915.17	gi|410671816|ref|YP_006924187.1|	-	0.02	15.3	0.7	0.053	13.9	0.7	1.7	1	1	0	1	1	1	0	Rubrerythrin
DUF1827	PF08860.10	gi|410671816|ref|YP_006924187.1|	-	0.1	12.9	0.2	0.22	11.8	0.2	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1827)
UPF0193	PF05250.11	gi|410671816|ref|YP_006924187.1|	-	0.21	11.4	2.8	0.12	12.1	0.5	1.7	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0193)
QueC	PF06508.13	gi|410671817|ref|YP_006924188.1|	-	4e-57	193.1	0.0	4.6e-57	192.9	0.0	1.0	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
ThiI	PF02568.14	gi|410671817|ref|YP_006924188.1|	-	0.00092	18.8	0.2	0.16	11.5	0.1	2.4	2	1	0	2	2	2	2	Thiamine	biosynthesis	protein	(ThiI)
ATP_bind_3	PF01171.20	gi|410671817|ref|YP_006924188.1|	-	0.003	17.3	0.0	0.008	15.9	0.1	1.6	2	0	0	2	2	2	1	PP-loop	family
Fer2	PF00111.27	gi|410671817|ref|YP_006924188.1|	-	0.0031	17.4	0.1	0.0065	16.4	0.1	1.5	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Asn_synthase	PF00733.21	gi|410671817|ref|YP_006924188.1|	-	0.01	15.6	0.1	0.018	14.7	0.1	1.4	1	0	0	1	1	1	1	Asparagine	synthase
NAD_synthase	PF02540.17	gi|410671817|ref|YP_006924188.1|	-	0.014	14.5	0.0	0.02	14.0	0.0	1.2	1	0	0	1	1	1	0	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|410671817|ref|YP_006924188.1|	-	0.12	11.1	0.0	0.2	10.4	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyl	transferase
DUF366	PF04017.12	gi|410671818|ref|YP_006924189.1|	-	1.4e-69	233.3	3.3	1.6e-69	233.1	3.3	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF366)
Radical_SAM	PF04055.21	gi|410671819|ref|YP_006924190.1|	-	3.2e-09	37.4	0.1	4.6e-09	36.9	0.1	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|410671819|ref|YP_006924190.1|	-	3.7e-08	33.5	0.8	1.6e-07	31.4	0.4	2.0	1	1	1	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|410671819|ref|YP_006924190.1|	-	1.3e-05	25.5	0.3	2.8e-05	24.4	0.3	1.5	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
SOAR	PF16533.5	gi|410671819|ref|YP_006924190.1|	-	0.017	15.1	0.2	0.15	12.0	0.0	2.3	2	1	1	3	3	3	0	STIM1	Orai1-activating	region
DUF1088	PF06469.11	gi|410671819|ref|YP_006924190.1|	-	0.19	11.4	0.1	0.32	10.6	0.1	1.3	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF1088)
PTPS	PF01242.19	gi|410671820|ref|YP_006924191.1|	-	3e-28	98.3	0.1	3.6e-28	98.0	0.1	1.0	1	0	0	1	1	1	1	6-pyruvoyl	tetrahydropterin	synthase
Radical_SAM	PF04055.21	gi|410671821|ref|YP_006924192.1|	-	5.8e-27	95.1	0.1	7.8e-27	94.7	0.1	1.2	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|410671821|ref|YP_006924192.1|	-	6.4e-06	26.3	0.0	1.8e-05	24.9	0.0	1.7	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|410671821|ref|YP_006924192.1|	-	0.0015	18.8	0.0	0.0029	17.9	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
AIRS	PF00586.24	gi|410671822|ref|YP_006924193.1|	-	8.8e-17	61.6	0.4	1.9e-16	60.4	0.4	1.6	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.22	gi|410671822|ref|YP_006924193.1|	-	1.1e-14	54.8	0.0	1.8e-14	54.1	0.0	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
DDE_3	PF13358.6	gi|410671825|ref|YP_006924196.1|	-	6.8e-25	87.5	0.6	2.1e-24	86.0	0.1	1.9	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|410671825|ref|YP_006924196.1|	-	2.7e-12	47.1	0.0	6.8e-12	45.8	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|410671825|ref|YP_006924196.1|	-	2.5e-08	33.8	0.0	6.6e-08	32.5	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_33	PF13592.6	gi|410671825|ref|YP_006924196.1|	-	4.6e-08	32.6	0.0	1.7e-07	30.8	0.0	2.0	2	0	0	2	2	2	1	Winged	helix-turn	helix
DDE_1	PF03184.19	gi|410671825|ref|YP_006924196.1|	-	1.1e-06	28.5	1.2	1.4e-06	28.1	0.1	1.8	2	1	0	2	2	2	1	DDE	superfamily	endonuclease
HTH_23	PF13384.6	gi|410671825|ref|YP_006924196.1|	-	4e-06	26.5	0.2	1.6e-05	24.5	0.0	2.1	3	0	0	3	3	3	1	Homeodomain-like	domain
rve	PF00665.26	gi|410671825|ref|YP_006924196.1|	-	5.5e-05	23.3	0.0	0.00011	22.4	0.0	1.5	1	0	0	1	1	1	1	Integrase	core	domain
HTH_28	PF13518.6	gi|410671825|ref|YP_006924196.1|	-	0.0026	17.8	0.0	0.006	16.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_ABP1_N	PF18107.1	gi|410671825|ref|YP_006924196.1|	-	0.0083	15.8	0.1	0.018	14.8	0.1	1.5	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
Radical_SAM	PF04055.21	gi|410671828|ref|YP_006924199.1|	-	1.1e-09	38.9	0.0	1.7e-09	38.3	0.0	1.4	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|410671828|ref|YP_006924199.1|	-	8.4e-06	26.1	0.0	1.4e-05	25.4	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|410671828|ref|YP_006924199.1|	-	0.00015	21.9	0.0	0.00029	20.9	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
META	PF03724.16	gi|410671829|ref|YP_006924200.1|	-	1.3e-19	70.2	0.0	1.7e-19	69.8	0.0	1.2	1	0	0	1	1	1	1	META	domain
DUF5640	PF18692.1	gi|410671829|ref|YP_006924200.1|	-	0.091	12.8	0.3	0.54	10.3	0.1	2.0	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5640)
DUF5611	PF18446.1	gi|410671831|ref|YP_006924202.1|	-	2.6e-34	118.1	0.3	2.9e-34	118.0	0.3	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5611)
DUF98	PF01947.16	gi|410671832|ref|YP_006924203.1|	-	1.9e-18	66.8	0.0	2.5e-18	66.5	0.0	1.1	1	0	0	1	1	1	1	p-hydroxybenzoic	acid	synthase
UTRA	PF07702.13	gi|410671832|ref|YP_006924203.1|	-	0.11	12.3	0.0	0.15	11.9	0.0	1.2	1	0	0	1	1	1	0	UTRA	domain
Chor_lyase	PF04345.13	gi|410671832|ref|YP_006924203.1|	-	0.16	11.6	0.0	0.17	11.5	0.0	1.2	1	0	0	1	1	1	0	Chorismate	lyase
Pentapeptide_4	PF13599.6	gi|410671833|ref|YP_006924204.1|	-	2.5e-25	88.4	35.8	8.6e-12	45.1	8.0	2.9	1	1	1	3	3	3	3	Pentapeptide	repeats	(9	copies)
Pentapeptide	PF00805.22	gi|410671833|ref|YP_006924204.1|	-	9e-24	82.7	38.5	8.1e-10	38.2	5.8	4.1	2	2	2	4	4	4	4	Pentapeptide	repeats	(8	copies)
Pentapeptide_3	PF13576.6	gi|410671833|ref|YP_006924204.1|	-	1e-13	51.2	19.5	6.7e-08	32.6	4.1	3.8	2	2	0	2	2	2	2	Pentapeptide	repeats	(9	copies)
Glyco_hydro_28	PF00295.17	gi|410671833|ref|YP_006924204.1|	-	0.36	9.8	3.7	0.67	8.9	0.3	2.3	1	1	0	2	2	2	0	Glycosyl	hydrolases	family	28
CfAFP	PF05264.11	gi|410671833|ref|YP_006924204.1|	-	1	9.4	4.9	17	5.4	1.3	2.1	1	1	1	2	2	2	0	Choristoneura	fumiferana	antifreeze	protein	(CfAFP)
Novirhabdo_Nv	PF05554.11	gi|410671833|ref|YP_006924204.1|	-	1.3	8.8	4.2	5.1	6.9	0.2	2.3	2	1	0	2	2	2	0	Viral	hemorrhagic	septicemia	virus	non-virion	protein
DUF1189	PF06691.11	gi|410671834|ref|YP_006924205.1|	-	2.3e-23	83.0	20.9	3.1e-23	82.6	20.9	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1189)
Yip1	PF04893.17	gi|410671834|ref|YP_006924205.1|	-	1.4e-06	28.2	8.9	2.2e-06	27.5	7.4	1.9	2	0	0	2	2	2	1	Yip1	domain
DUF2207	PF09972.9	gi|410671834|ref|YP_006924205.1|	-	2.5	6.8	7.4	11	4.7	7.4	2.0	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
HTH_42	PF06224.12	gi|410671835|ref|YP_006924206.1|	-	1.9e-61	208.4	0.0	2.1e-61	208.3	0.0	1.0	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DJ-1_PfpI	PF01965.24	gi|410671837|ref|YP_006924208.1|	-	8.8e-32	110.2	0.0	1.1e-31	109.9	0.0	1.1	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase_3	PF07685.14	gi|410671837|ref|YP_006924208.1|	-	0.027	14.1	0.0	0.035	13.7	0.0	1.2	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
HATPase_c	PF02518.26	gi|410671838|ref|YP_006924209.1|	-	3.2e-29	101.7	0.3	5e-28	97.8	0.0	2.7	3	0	0	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|410671838|ref|YP_006924209.1|	-	2.3e-23	82.3	0.6	1.5e-05	25.2	0.0	4.5	4	0	0	4	4	4	4	PAS	fold
PAS_4	PF08448.10	gi|410671838|ref|YP_006924209.1|	-	2.7e-23	82.3	0.0	3.1e-08	33.8	0.0	4.1	4	0	0	4	4	4	3	PAS	fold
HisKA	PF00512.25	gi|410671838|ref|YP_006924209.1|	-	1.6e-21	76.1	0.0	4.6e-21	74.6	0.0	1.9	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.7	gi|410671838|ref|YP_006924209.1|	-	1.4e-19	70.3	0.1	1.2e-09	38.4	0.0	4.2	4	0	0	4	4	4	3	PAS	domain
PAS	PF00989.25	gi|410671838|ref|YP_006924209.1|	-	4e-19	68.7	0.1	9.2e-12	45.0	0.1	4.1	4	0	0	4	4	4	2	PAS	fold
PAS_8	PF13188.7	gi|410671838|ref|YP_006924209.1|	-	1.9e-14	53.3	0.0	5.2e-08	32.7	0.0	2.8	2	0	0	2	2	2	2	PAS	domain
PAS_7	PF12860.7	gi|410671838|ref|YP_006924209.1|	-	3.6e-07	30.3	0.3	0.00014	22.0	0.0	4.2	4	1	0	4	4	4	1	PAS	fold
HATPase_c_3	PF13589.6	gi|410671838|ref|YP_006924209.1|	-	0.035	13.9	0.0	0.11	12.3	0.0	1.9	2	0	0	2	2	2	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF389	PF04087.14	gi|410671839|ref|YP_006924210.1|	-	1.3e-29	103.0	18.5	1.3e-29	103.0	18.5	1.6	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF389)
DUF3671	PF12420.8	gi|410671839|ref|YP_006924210.1|	-	2.2	8.4	7.8	9.3	6.4	0.7	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function
Acetyltransf_1	PF00583.25	gi|410671840|ref|YP_006924211.1|	-	5.6e-17	62.0	0.0	8e-17	61.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|410671840|ref|YP_006924211.1|	-	6e-11	42.4	0.1	9.2e-11	41.8	0.1	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|410671840|ref|YP_006924211.1|	-	1e-09	38.7	0.1	1.7e-09	37.9	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|410671840|ref|YP_006924211.1|	-	2.5e-07	30.6	0.0	4.8e-07	29.7	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|410671840|ref|YP_006924211.1|	-	0.00019	21.6	0.4	0.00026	21.2	0.4	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_15	PF17013.5	gi|410671840|ref|YP_006924211.1|	-	0.0027	17.2	0.3	0.0044	16.5	0.3	1.4	1	1	0	1	1	1	1	Putative	acetyl-transferase
Acetyltransf_9	PF13527.7	gi|410671840|ref|YP_006924211.1|	-	0.0035	17.4	0.1	0.0051	16.9	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|410671840|ref|YP_006924211.1|	-	0.01	15.5	0.0	0.017	14.8	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|410671840|ref|YP_006924211.1|	-	0.016	15.9	0.0	0.024	15.3	0.0	1.5	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|410671840|ref|YP_006924211.1|	-	0.12	12.5	0.0	0.22	11.7	0.0	1.4	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Na_H_Exchanger	PF00999.21	gi|410671843|ref|YP_006924214.1|	-	5.9e-47	160.3	44.8	7.5e-47	159.9	44.8	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
Usp	PF00582.26	gi|410671843|ref|YP_006924214.1|	-	2e-07	31.6	0.2	3.3e-07	30.9	0.2	1.3	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF2238	PF09997.9	gi|410671844|ref|YP_006924215.1|	-	0.00076	19.3	0.8	0.00076	19.3	0.8	3.5	2	2	1	3	3	3	2	Predicted	membrane	protein	(DUF2238)
Multi_Drug_Res	PF00893.19	gi|410671845|ref|YP_006924216.1|	-	1.4e-27	96.2	7.1	1.9e-27	95.7	7.1	1.2	1	0	0	1	1	1	1	Small	Multidrug	Resistance	protein
EamA	PF00892.20	gi|410671845|ref|YP_006924216.1|	-	0.14	12.3	10.8	1.4	9.1	10.6	2.0	1	1	0	1	1	1	0	EamA-like	transporter	family
TMEM100	PF16311.5	gi|410671845|ref|YP_006924216.1|	-	1.6	8.3	5.2	0.41	10.2	1.9	1.6	1	1	1	2	2	2	0	Transmembrane	protein	100
DUF2530	PF10745.9	gi|410671845|ref|YP_006924216.1|	-	9.9	6.5	9.1	6.3	7.1	4.9	2.4	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2530)
Tex_N	PF09371.10	gi|410671846|ref|YP_006924217.1|	-	0.0085	15.8	1.0	0.012	15.3	1.0	1.2	1	0	0	1	1	1	1	Tex-like	protein	N-terminal	domain
HTH_24	PF13412.6	gi|410671846|ref|YP_006924217.1|	-	0.023	14.3	0.0	0.041	13.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DprA_WH	PF17782.1	gi|410671846|ref|YP_006924217.1|	-	0.25	11.5	0.0	0.48	10.6	0.0	1.4	1	0	0	1	1	1	0	DprA	winged	helix	domain
Acetyltransf_18	PF18014.1	gi|410671849|ref|YP_006924220.1|	-	6.4e-26	90.6	0.0	8.2e-26	90.3	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|410671849|ref|YP_006924220.1|	-	8.2e-11	42.2	0.0	1.5e-10	41.4	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|410671849|ref|YP_006924220.1|	-	3.2e-09	37.0	0.0	7.6e-09	35.8	0.0	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|410671849|ref|YP_006924220.1|	-	2.5e-08	33.9	0.0	4.1e-08	33.2	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|410671849|ref|YP_006924220.1|	-	0.061	13.5	0.0	0.12	12.5	0.0	1.4	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
DJ-1_PfpI	PF01965.24	gi|410671850|ref|YP_006924221.1|	-	1.3e-58	197.4	0.0	1.5e-58	197.3	0.0	1.0	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase	PF00117.28	gi|410671850|ref|YP_006924221.1|	-	1.2e-05	25.2	0.0	1.3e-05	25.1	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Catalase_C	PF18011.1	gi|410671850|ref|YP_006924221.1|	-	3.7e-05	23.4	0.0	5.2e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	C-terminal	domain	found	in	long	catalases
ThiJ_like	PF17124.5	gi|410671850|ref|YP_006924221.1|	-	0.00011	21.9	0.0	0.0074	16.0	0.0	2.3	1	1	1	2	2	2	1	ThiJ/PfpI	family-like
Peptidase_C26	PF07722.13	gi|410671850|ref|YP_006924221.1|	-	0.0037	17.1	0.0	0.005	16.6	0.0	1.3	1	0	0	1	1	1	1	Peptidase	C26
GATase_5	PF13507.6	gi|410671850|ref|YP_006924221.1|	-	0.087	11.9	0.0	0.12	11.4	0.0	1.2	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase_3	PF07685.14	gi|410671850|ref|YP_006924221.1|	-	0.11	12.1	0.0	0.13	11.8	0.0	1.2	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
DUF1059	PF06348.11	gi|410671851|ref|YP_006924222.1|	-	2.4e-09	37.3	0.6	3.1e-09	36.9	0.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1059)
DUF327	PF03885.13	gi|410671851|ref|YP_006924222.1|	-	0.007	16.3	0.0	0.008	16.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF327)
RPAP1_N	PF08621.10	gi|410671851|ref|YP_006924222.1|	-	0.046	13.5	0.2	0.066	13.0	0.2	1.2	1	0	0	1	1	1	0	RPAP1-like,	N-terminal
Zn_protease	PF05618.11	gi|410671852|ref|YP_006924223.1|	-	1.7e-06	28.0	0.1	7.9e-06	25.8	0.1	1.9	1	1	0	1	1	1	1	Putative	ATP-dependant	zinc	protease
Pep_deformylase	PF01327.21	gi|410671852|ref|YP_006924223.1|	-	0.022	14.4	1.1	0.16	11.6	1.1	2.0	1	1	0	1	1	1	0	Polypeptide	deformylase
FRB_dom	PF08771.11	gi|410671853|ref|YP_006924224.1|	-	0.042	14.3	0.8	0.07	13.5	0.4	1.6	1	1	0	1	1	1	0	FKBP12-rapamycin	binding	domain
DUF1353	PF07087.11	gi|410671853|ref|YP_006924224.1|	-	0.11	12.2	0.4	15	5.4	0.1	2.8	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1353)
TPR_8	PF13181.6	gi|410671854|ref|YP_006924225.1|	-	9.9e-11	41.0	0.1	1.5e-08	34.2	0.0	2.9	2	1	1	3	3	3	1	Tetratricopeptide	repeat
TPR_1	PF00515.28	gi|410671854|ref|YP_006924225.1|	-	2.1e-10	40.0	0.1	7.6e-09	35.0	0.0	2.3	2	0	0	2	2	2	1	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|410671854|ref|YP_006924225.1|	-	6.9e-10	38.3	0.1	9.1e-09	34.8	0.0	2.3	2	0	0	2	2	2	1	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|410671854|ref|YP_006924225.1|	-	6.4e-07	29.8	0.0	2.1e-06	28.1	0.0	1.9	1	1	0	1	1	1	1	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|410671854|ref|YP_006924225.1|	-	1.2e-06	28.4	1.1	2.9e-06	27.3	0.1	2.2	2	0	0	2	2	2	1	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|410671854|ref|YP_006924225.1|	-	2.5e-05	24.7	0.1	0.0043	17.8	0.0	3.0	2	1	1	3	3	3	2	Tetratricopeptide	repeat
NARP1	PF12569.8	gi|410671854|ref|YP_006924225.1|	-	0.00095	18.2	0.0	0.0014	17.6	0.0	1.2	1	0	0	1	1	1	1	NMDA	receptor-regulated	protein	1
TPR_9	PF13371.6	gi|410671854|ref|YP_006924225.1|	-	0.002	18.2	0.0	0.0042	17.2	0.0	1.4	1	0	0	1	1	1	1	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|410671854|ref|YP_006924225.1|	-	0.02	14.9	0.0	0.32	11.1	0.0	2.4	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|410671854|ref|YP_006924225.1|	-	0.051	14.2	0.0	0.14	12.9	0.0	1.8	1	0	0	1	1	1	0	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|410671854|ref|YP_006924225.1|	-	0.066	13.5	0.0	0.21	11.9	0.0	1.8	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|410671854|ref|YP_006924225.1|	-	0.076	12.7	0.3	3.3	7.5	0.0	2.7	2	1	1	3	3	3	0	TPR	repeat
Fis1_TPR_C	PF14853.6	gi|410671854|ref|YP_006924225.1|	-	0.092	12.8	0.0	0.26	11.4	0.0	1.7	2	0	0	2	2	1	0	Fis1	C-terminal	tetratricopeptide	repeat
CitMHS	PF03600.16	gi|410671855|ref|YP_006924226.1|	-	7e-32	110.8	36.5	7e-32	110.8	36.5	1.7	1	1	1	2	2	2	1	Citrate	transporter
Na_sulph_symp	PF00939.19	gi|410671855|ref|YP_006924226.1|	-	0.00012	21.3	38.5	0.013	14.5	38.5	2.8	1	1	0	1	1	1	1	Sodium:sulfate	symporter	transmembrane	region
DUF2140	PF09911.9	gi|410671855|ref|YP_006924226.1|	-	0.18	11.3	3.3	5	6.6	0.1	2.6	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2140)
FAA_hydrolase	PF01557.18	gi|410671857|ref|YP_006924228.1|	-	1.6e-70	237.2	0.0	1.9e-70	236.9	0.0	1.0	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
HTH_24	PF13412.6	gi|410671858|ref|YP_006924229.1|	-	0.0017	17.8	0.1	0.0031	17.0	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|410671858|ref|YP_006924229.1|	-	0.0022	17.8	0.0	0.0035	17.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|410671858|ref|YP_006924229.1|	-	0.0031	17.8	0.0	0.0037	17.6	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_5	PF01022.20	gi|410671858|ref|YP_006924229.1|	-	0.014	15.3	0.1	0.03	14.2	0.1	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
RNA_pol_Rpc34	PF05158.12	gi|410671858|ref|YP_006924229.1|	-	0.03	13.7	0.0	0.041	13.3	0.0	1.1	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
HTH_47	PF16221.5	gi|410671858|ref|YP_006924229.1|	-	0.036	13.6	0.0	0.051	13.1	0.0	1.3	1	0	0	1	1	1	0	winged	helix-turn-helix
HTH_IclR	PF09339.10	gi|410671858|ref|YP_006924229.1|	-	0.037	13.8	0.2	0.057	13.2	0.2	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_12	PF08461.10	gi|410671858|ref|YP_006924229.1|	-	0.061	13.3	0.1	0.12	12.4	0.1	1.7	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
MerR	PF00376.23	gi|410671858|ref|YP_006924229.1|	-	0.089	12.6	0.1	3.5	7.5	0.0	2.4	2	0	0	2	2	2	0	MerR	family	regulatory	protein
FaeA	PF04703.12	gi|410671858|ref|YP_006924229.1|	-	0.11	12.9	0.0	0.34	11.3	0.0	1.8	1	1	1	2	2	2	0	FaeA-like	protein
tRNA-synt_1c	PF00749.21	gi|410671859|ref|YP_006924230.1|	-	3.9e-61	206.7	0.0	5e-61	206.3	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.18	gi|410671859|ref|YP_006924230.1|	-	3.1e-30	105.3	0.0	5e-30	104.7	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
DUF1722	PF08349.11	gi|410671860|ref|YP_006924231.1|	-	6.5e-35	119.9	0.0	1.1e-34	119.2	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1722)
DUF523	PF04463.12	gi|410671860|ref|YP_006924231.1|	-	5e-31	107.6	0.0	8e-31	106.9	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF523)
Zn_Tnp_IS1595	PF12760.7	gi|410671861|ref|YP_006924232.1|	-	7.9e-06	25.8	0.2	1.2e-05	25.2	0.2	1.3	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|410671861|ref|YP_006924232.1|	-	0.00029	21.1	0.2	0.00038	20.8	0.2	1.2	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
zf-RRN7	PF11781.8	gi|410671861|ref|YP_006924232.1|	-	0.0008	19.0	6.6	0.01	15.5	6.6	2.1	1	1	0	1	1	1	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Zn-ribbon_8	PF09723.10	gi|410671861|ref|YP_006924232.1|	-	0.0034	17.5	0.3	1.1	9.4	0.0	2.2	2	0	0	2	2	2	2	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|410671861|ref|YP_006924232.1|	-	0.0042	17.0	0.1	0.0062	16.4	0.1	1.3	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
RecR	PF02132.15	gi|410671861|ref|YP_006924232.1|	-	0.0068	15.9	0.3	1.3	8.7	0.0	2.3	2	0	0	2	2	2	1	RecR	protein
zinc_ribbon_2	PF13240.6	gi|410671861|ref|YP_006924232.1|	-	0.011	15.5	2.4	0.56	10.0	0.0	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ACC	PF17848.1	gi|410671861|ref|YP_006924232.1|	-	0.028	14.5	3.8	0.041	14.0	0.5	2.3	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
TackOD1	PF18551.1	gi|410671861|ref|YP_006924232.1|	-	0.031	14.0	0.1	0.039	13.6	0.1	1.3	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
RNA_POL_M_15KD	PF02150.16	gi|410671861|ref|YP_006924232.1|	-	0.034	14.0	0.4	0.076	12.9	0.3	1.6	1	1	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
Nudix_N_2	PF14803.6	gi|410671861|ref|YP_006924232.1|	-	0.044	13.7	4.7	4.6	7.2	0.0	3.0	2	1	0	3	3	3	0	Nudix	N-terminal
zf-ribbon_3	PF13248.6	gi|410671861|ref|YP_006924232.1|	-	0.17	11.4	6.1	1.5	8.3	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|410671861|ref|YP_006924232.1|	-	0.19	11.2	4.1	0.27	10.8	2.4	2.2	1	1	0	1	1	1	0	TFIIB	zinc-binding
Prim_Zn_Ribbon	PF08273.12	gi|410671861|ref|YP_006924232.1|	-	0.22	11.8	2.8	0.7	10.2	2.8	1.8	1	1	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
Rubredoxin_2	PF18073.1	gi|410671861|ref|YP_006924232.1|	-	0.34	10.7	5.6	1.4	8.7	1.7	2.1	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Desulfoferrod_N	PF06397.12	gi|410671861|ref|YP_006924232.1|	-	1.4	8.6	7.0	3.8	7.2	2.1	2.3	1	1	1	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
UPF0547	PF10571.9	gi|410671861|ref|YP_006924232.1|	-	2.6	8.2	7.1	14	5.8	0.1	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Ribosomal_S3Ae	PF01015.18	gi|410671862|ref|YP_006924233.1|	-	1.8e-66	223.6	4.4	2.1e-66	223.4	4.4	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
NosD	PF05048.13	gi|410671863|ref|YP_006924234.1|	-	1.7e-52	178.1	139.5	3.6e-15	55.9	25.3	6.2	1	1	4	6	6	6	6	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.6	gi|410671863|ref|YP_006924234.1|	-	9.1e-47	158.8	151.9	1.3e-13	51.2	39.3	6.4	2	2	4	6	6	6	6	Right	handed	beta	helix	region
Pectate_lyase_3	PF12708.7	gi|410671863|ref|YP_006924234.1|	-	0.00097	19.0	86.5	0.0021	17.9	0.9	6.4	3	2	2	5	5	5	3	Pectate	lyase	superfamily	protein
Mucin_bdg	PF03272.13	gi|410671863|ref|YP_006924234.1|	-	0.059	13.4	10.4	1.2	9.2	0.6	4.2	4	0	0	4	4	4	0	Putative	mucin	or	carbohydrate-binding	module
FlpD	PF02662.16	gi|410671863|ref|YP_006924234.1|	-	0.11	12.4	0.0	0.4	10.7	0.0	1.9	1	0	0	1	1	1	0	Methyl-viologen-reducing	hydrogenase,	delta	subunit
TrmB	PF01978.19	gi|410671864|ref|YP_006924235.1|	-	0.00045	20.0	0.0	0.0015	18.4	0.0	1.8	1	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_37	PF13744.6	gi|410671864|ref|YP_006924235.1|	-	0.0099	15.8	0.0	0.02	14.9	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|410671864|ref|YP_006924235.1|	-	0.014	15.7	0.0	0.035	14.4	0.0	1.7	1	1	1	2	2	2	0	Transcriptional	regulator
TFIIE_alpha	PF02002.17	gi|410671864|ref|YP_006924235.1|	-	0.018	14.9	0.2	0.031	14.1	0.1	1.5	1	1	0	1	1	1	0	TFIIE	alpha	subunit
MarR_2	PF12802.7	gi|410671864|ref|YP_006924235.1|	-	0.11	12.4	0.0	0.28	11.1	0.0	1.6	2	0	0	2	2	2	0	MarR	family
Nuc_deoxyrib_tr	PF05014.15	gi|410671865|ref|YP_006924236.1|	-	8.6e-21	74.3	0.0	9.5e-21	74.2	0.0	1.1	1	0	0	1	1	1	1	Nucleoside	2-deoxyribosyltransferase
Nuc_deoxyri_tr2	PF15891.5	gi|410671865|ref|YP_006924236.1|	-	1.3e-12	48.0	0.0	1.5e-12	47.8	0.0	1.1	1	0	0	1	1	1	1	Nucleoside	2-deoxyribosyltransferase	like
DUF4406	PF14359.6	gi|410671865|ref|YP_006924236.1|	-	0.0023	18.4	0.0	0.0035	17.8	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4406)
RNB	PF00773.19	gi|410671865|ref|YP_006924236.1|	-	0.074	12.4	0.0	0.096	12.0	0.0	1.1	1	0	0	1	1	1	0	RNB	domain
TPR_1	PF00515.28	gi|410671866|ref|YP_006924237.1|	-	4.6e-78	254.1	39.8	7e-12	44.6	1.0	9.5	10	0	0	10	10	10	9	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|410671866|ref|YP_006924237.1|	-	7.9e-67	216.1	32.6	1.6e-09	37.1	0.5	9.6	10	0	0	10	10	10	9	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|410671866|ref|YP_006924237.1|	-	9e-61	201.3	36.3	3.3e-11	42.7	3.7	9.5	2	2	7	9	9	9	8	TPR	repeat
TPR_8	PF13181.6	gi|410671866|ref|YP_006924237.1|	-	1.6e-53	174.5	32.9	3e-07	30.1	0.1	9.3	9	0	0	9	9	9	9	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|410671866|ref|YP_006924237.1|	-	2.7e-52	171.5	15.7	3.4e-06	27.1	0.2	9.5	9	1	0	9	9	9	8	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|410671866|ref|YP_006924237.1|	-	1.4e-42	144.1	0.0	1.9e-10	41.2	0.0	6.9	2	2	4	7	7	7	6	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|410671866|ref|YP_006924237.1|	-	4.4e-38	126.7	0.9	5.7e-06	26.7	0.1	8.9	1	1	9	10	10	9	7	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|410671866|ref|YP_006924237.1|	-	2.2e-36	124.0	7.6	1.2e-07	31.9	0.6	7.1	2	1	4	6	6	6	5	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|410671866|ref|YP_006924237.1|	-	7.3e-30	103.3	4.5	1.5e-09	38.2	0.0	6.2	2	2	6	8	8	8	7	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|410671866|ref|YP_006924237.1|	-	1.8e-23	82.5	0.0	2.5e-07	30.7	0.0	4.4	4	0	0	4	4	4	3	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|410671866|ref|YP_006924237.1|	-	1e-20	72.9	8.1	0.057	14.1	0.1	8.8	10	0	0	10	10	8	4	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|410671866|ref|YP_006924237.1|	-	2.7e-19	67.7	20.3	0.13	12.3	0.1	9.2	8	1	1	9	9	9	6	Tetratricopeptide	repeat
ANAPC3	PF12895.7	gi|410671866|ref|YP_006924237.1|	-	1e-18	67.3	11.6	7.5e-06	26.1	0.5	4.2	3	1	1	4	4	4	3	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_10	PF13374.6	gi|410671866|ref|YP_006924237.1|	-	7.3e-14	51.1	15.0	0.12	12.3	0.1	9.0	9	0	0	9	9	9	3	Tetratricopeptide	repeat
DUF3856	PF12968.7	gi|410671866|ref|YP_006924237.1|	-	7e-13	48.9	0.8	1	9.4	0.0	6.9	1	1	6	7	7	7	4	Domain	of	Unknown	Function	(DUF3856)
NARP1	PF12569.8	gi|410671866|ref|YP_006924237.1|	-	3.6e-11	42.7	3.6	0.098	11.5	0.1	5.2	1	1	2	5	5	5	3	NMDA	receptor-regulated	protein	1
Fis1_TPR_C	PF14853.6	gi|410671866|ref|YP_006924237.1|	-	4.5e-11	42.6	14.3	0.013	15.5	0.1	7.0	8	0	0	8	8	6	2	Fis1	C-terminal	tetratricopeptide	repeat
SRP_TPR_like	PF17004.5	gi|410671866|ref|YP_006924237.1|	-	4.1e-09	36.5	11.0	4.9e-05	23.3	0.1	4.0	3	1	1	4	4	4	2	Putative	TPR-like	repeat
TPR_3	PF07720.12	gi|410671866|ref|YP_006924237.1|	-	4.3e-07	29.8	9.7	0.13	12.3	0.0	6.6	6	1	1	7	7	6	1	Tetratricopeptide	repeat
NRBF2_MIT	PF17169.4	gi|410671866|ref|YP_006924237.1|	-	1e-06	28.9	11.7	8.4	6.7	0.0	7.6	4	3	4	8	8	8	0	MIT	domain	of	nuclear	receptor-binding	factor	2
BTAD	PF03704.17	gi|410671866|ref|YP_006924237.1|	-	4.5e-06	27.2	0.3	0.023	15.1	0.0	4.0	1	1	2	4	4	4	1	Bacterial	transcriptional	activator	domain
DUF5113	PF17140.4	gi|410671866|ref|YP_006924237.1|	-	4.4e-05	23.3	7.5	1.1	9.1	0.0	5.6	2	1	3	5	5	5	1	Domain	of	unknown	function	(DUF5113)
TPR_21	PF09976.9	gi|410671866|ref|YP_006924237.1|	-	6.4e-05	22.7	5.1	0.23	11.1	0.3	5.1	2	2	4	6	6	6	1	Tetratricopeptide	repeat-like	domain
PPR	PF01535.20	gi|410671866|ref|YP_006924237.1|	-	0.00011	22.3	6.8	25	5.4	0.0	7.4	8	0	0	8	8	7	0	PPR	repeat
MIT	PF04212.18	gi|410671866|ref|YP_006924237.1|	-	0.00011	22.1	23.1	1.1	9.4	0.2	8.1	8	1	1	9	9	9	2	MIT	(microtubule	interacting	and	transport)	domain
Wzy_C_2	PF11846.8	gi|410671866|ref|YP_006924237.1|	-	0.00013	22.0	1.3	7.9	6.4	0.0	4.9	5	2	2	7	7	6	0	Virulence	factor	membrane-bound	polymerase,	C-terminal
TPR_15	PF13429.6	gi|410671866|ref|YP_006924237.1|	-	0.00016	21.0	0.0	0.12	11.6	0.0	2.6	1	1	1	2	2	2	2	Tetratricopeptide	repeat
HTH_Bact	PF18768.1	gi|410671866|ref|YP_006924237.1|	-	0.00032	20.2	6.0	11	5.7	0.0	6.5	7	0	0	7	7	6	0	Helix-turn-helix	bacterial	domain
Ribosomal_S16	PF00886.19	gi|410671866|ref|YP_006924237.1|	-	0.0004	20.4	3.4	13	5.9	0.0	4.7	3	2	0	3	3	3	0	Ribosomal	protein	S16
TPR_4	PF07721.14	gi|410671866|ref|YP_006924237.1|	-	0.004	17.6	0.3	63	4.6	0.1	4.2	4	0	0	4	4	3	0	Tetratricopeptide	repeat
TruB_N	PF01509.18	gi|410671866|ref|YP_006924237.1|	-	0.0062	16.9	0.0	3.4	8.0	0.0	3.2	2	1	2	4	4	4	1	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
ANAPC5	PF12862.7	gi|410671866|ref|YP_006924237.1|	-	0.0069	16.4	0.0	4.8	7.3	0.0	4.0	3	1	0	3	3	3	0	Anaphase-promoting	complex	subunit	5
FAT	PF02259.23	gi|410671866|ref|YP_006924237.1|	-	0.017	14.3	8.0	13	4.8	0.1	5.4	1	1	4	6	6	6	0	FAT	domain
SGTA_dimer	PF16546.5	gi|410671866|ref|YP_006924237.1|	-	0.028	14.2	1.6	22	4.9	0.0	4.6	5	0	0	5	5	5	0	Homodimerisation	domain	of	SGTA
RPN6_N	PF18055.1	gi|410671866|ref|YP_006924237.1|	-	0.035	14.4	0.3	17	5.8	0.0	4.0	4	1	1	5	5	5	0	26S	proteasome	regulatory	subunit	RPN6	N-terminal	domain
Alkyl_sulf_dimr	PF14863.6	gi|410671866|ref|YP_006924237.1|	-	0.041	14.3	0.0	5.1	7.6	0.0	3.2	3	1	1	4	4	4	0	Alkyl	sulfatase	dimerisation
DUF5588	PF17826.1	gi|410671866|ref|YP_006924237.1|	-	0.072	12.0	0.1	8.5	5.1	0.0	2.8	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5588)
Rubredoxin_C	PF18267.1	gi|410671866|ref|YP_006924237.1|	-	0.099	12.6	0.2	1.2	9.1	0.0	2.7	2	0	0	2	2	2	0	Rubredoxin	NAD+	reductase	C-terminal	domain
RPN7	PF10602.9	gi|410671866|ref|YP_006924237.1|	-	0.33	10.6	8.2	22	4.7	0.1	5.3	4	3	2	6	6	5	0	26S	proteasome	subunit	RPN7
PPTA	PF01239.22	gi|410671866|ref|YP_006924237.1|	-	4.6	7.1	12.4	4	7.3	0.1	5.5	6	0	0	6	6	6	0	Protein	prenyltransferase	alpha	subunit	repeat
RVT_N	PF13655.6	gi|410671867|ref|YP_006924238.1|	-	0.0011	19.2	0.4	0.0017	18.6	0.4	1.3	1	0	0	1	1	1	1	N-terminal	domain	of	reverse	transcriptase
DDE_Tnp_1	PF01609.21	gi|410671868|ref|YP_006924239.1|	-	8.4e-10	38.6	1.2	1.7e-09	37.7	1.2	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|410671868|ref|YP_006924239.1|	-	0.042	13.9	0.1	0.092	12.8	0.1	1.5	1	0	0	1	1	1	0	Transposase	domain	(DUF772)
GST_N_3	PF13417.6	gi|410671868|ref|YP_006924239.1|	-	0.065	13.7	0.0	0.95	9.9	0.0	2.3	2	0	0	2	2	2	0	Glutathione	S-transferase,	N-terminal	domain
RVT_1	PF00078.27	gi|410671869|ref|YP_006924240.1|	-	6.1e-42	143.6	1.0	9.8e-42	143.0	0.1	1.8	2	0	0	2	2	2	1	Reverse	transcriptase	(RNA-dependent	DNA	polymerase)
RVT_N	PF13655.6	gi|410671869|ref|YP_006924240.1|	-	4.8e-31	106.8	4.2	1.2e-30	105.6	4.2	1.8	1	0	0	1	1	1	1	N-terminal	domain	of	reverse	transcriptase
GIIM	PF08388.11	gi|410671869|ref|YP_006924240.1|	-	6e-26	90.3	6.2	2.1e-25	88.6	6.2	2.0	1	0	0	1	1	1	1	Group	II	intron,	maturase-specific	domain
HNH_3	PF13392.6	gi|410671869|ref|YP_006924240.1|	-	0.00045	19.9	0.8	0.0013	18.4	0.8	1.7	1	0	0	1	1	1	1	HNH	endonuclease
RVT_2	PF07727.14	gi|410671869|ref|YP_006924240.1|	-	0.021	14.5	0.1	0.037	13.7	0.1	1.3	1	0	0	1	1	1	0	Reverse	transcriptase	(RNA-dependent	DNA	polymerase)
HNH	PF01844.23	gi|410671869|ref|YP_006924240.1|	-	0.29	11.4	6.1	0.69	10.1	6.1	1.7	1	0	0	1	1	1	0	HNH	endonuclease
HK	PF02110.15	gi|410671873|ref|YP_006924244.1|	-	2.3e-67	227.0	5.7	2.6e-67	226.8	5.7	1.0	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
Phos_pyr_kin	PF08543.12	gi|410671873|ref|YP_006924244.1|	-	3.8e-11	42.8	0.7	5e-11	42.5	0.7	1.1	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
Carb_kinase	PF01256.17	gi|410671873|ref|YP_006924244.1|	-	3.3e-06	26.8	0.5	4e-06	26.5	0.5	1.1	1	0	0	1	1	1	1	Carbohydrate	kinase
PfkB	PF00294.24	gi|410671873|ref|YP_006924244.1|	-	0.0034	16.7	0.5	0.0044	16.4	0.5	1.1	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Hyphal_reg_CWP	PF11765.8	gi|410671873|ref|YP_006924244.1|	-	0.089	11.7	0.0	0.13	11.2	0.0	1.3	1	0	0	1	1	1	0	Hyphally	regulated	cell	wall	protein	N-terminal
TMP-TENI	PF02581.17	gi|410671874|ref|YP_006924245.1|	-	9e-61	204.4	0.6	1.1e-60	204.1	0.6	1.0	1	0	0	1	1	1	1	Thiamine	monophosphate	synthase
NMO	PF03060.15	gi|410671874|ref|YP_006924245.1|	-	0.016	14.6	1.3	0.043	13.2	1.3	1.7	1	1	0	1	1	1	0	Nitronate	monooxygenase
Ribul_P_3_epim	PF00834.19	gi|410671874|ref|YP_006924245.1|	-	0.046	13.1	0.3	0.085	12.2	0.3	1.4	1	0	0	1	1	1	0	Ribulose-phosphate	3	epimerase	family
Peptidase_M48	PF01435.18	gi|410671875|ref|YP_006924246.1|	-	1.1e-08	35.1	3.8	2.8e-08	33.8	0.0	2.6	2	1	1	3	3	3	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|410671875|ref|YP_006924246.1|	-	0.0029	16.9	0.4	0.0043	16.3	0.4	1.3	1	1	0	1	1	1	1	BlaR1	peptidase	M56
DUF4157	PF13699.6	gi|410671875|ref|YP_006924246.1|	-	0.0037	17.5	0.0	0.0061	16.8	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4157)
Ni_hydr_CYTB	PF01292.20	gi|410671875|ref|YP_006924246.1|	-	0.0072	15.9	0.5	0.014	15.0	0.5	1.4	2	0	0	2	2	2	1	Prokaryotic	cytochrome	b561
DUF2268	PF10026.9	gi|410671875|ref|YP_006924246.1|	-	0.012	15.2	0.1	0.024	14.2	0.1	1.5	1	1	0	1	1	1	0	Predicted	Zn-dependent	protease	(DUF2268)
DUF4131	PF13567.6	gi|410671875|ref|YP_006924246.1|	-	1.6	8.4	10.5	31	4.2	10.5	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
Penicillinase_R	PF03965.16	gi|410671876|ref|YP_006924247.1|	-	1.5e-09	38.2	0.0	1.8e-09	37.9	0.0	1.1	1	0	0	1	1	1	1	Penicillinase	repressor
TrmB	PF01978.19	gi|410671876|ref|YP_006924247.1|	-	8.2e-08	32.0	0.0	1.7e-07	31.0	0.0	1.4	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|410671876|ref|YP_006924247.1|	-	4.2e-07	29.4	0.0	1e-06	28.2	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|410671876|ref|YP_006924247.1|	-	4.3e-07	29.7	0.0	6.1e-07	29.2	0.0	1.2	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|410671876|ref|YP_006924247.1|	-	5.1e-07	29.5	0.0	1e-06	28.6	0.0	1.5	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|410671876|ref|YP_006924247.1|	-	0.00015	21.5	0.0	0.00024	20.9	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_9	PF08221.11	gi|410671876|ref|YP_006924247.1|	-	0.00057	19.9	0.0	0.0022	18.0	0.0	1.9	2	1	1	3	3	3	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_20	PF12840.7	gi|410671876|ref|YP_006924247.1|	-	0.0011	19.0	0.0	0.0027	17.7	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|410671876|ref|YP_006924247.1|	-	0.0021	18.5	0.0	0.0029	18.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TFIIE_alpha	PF02002.17	gi|410671876|ref|YP_006924247.1|	-	0.0021	17.9	0.0	0.0028	17.5	0.0	1.3	1	1	0	1	1	1	1	TFIIE	alpha	subunit
HTH_34	PF13601.6	gi|410671876|ref|YP_006924247.1|	-	0.011	15.9	0.0	0.017	15.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|410671876|ref|YP_006924247.1|	-	0.016	15.1	0.0	0.024	14.5	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Fe_dep_repress	PF01325.19	gi|410671876|ref|YP_006924247.1|	-	0.03	14.5	0.0	0.074	13.3	0.0	1.7	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF4423	PF14394.6	gi|410671876|ref|YP_006924247.1|	-	0.04	13.6	0.0	0.044	13.5	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
Rrf2	PF02082.20	gi|410671876|ref|YP_006924247.1|	-	0.042	14.2	0.0	0.085	13.2	0.0	1.6	2	0	0	2	2	2	0	Transcriptional	regulator
FtsX	PF02687.21	gi|410671877|ref|YP_006924248.1|	-	7.3e-11	42.4	5.8	7.3e-11	42.4	5.8	2.7	3	0	0	3	3	3	1	FtsX-like	permease	family
MacB_PCD	PF12704.7	gi|410671877|ref|YP_006924248.1|	-	3.1e-10	40.8	0.2	3.1e-10	40.8	0.2	2.0	2	0	0	2	2	2	1	MacB-like	periplasmic	core	domain
ABC_tran	PF00005.27	gi|410671878|ref|YP_006924249.1|	-	8.4e-35	120.3	0.0	1.2e-34	119.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|410671878|ref|YP_006924249.1|	-	1.3e-06	28.0	0.3	0.00088	18.8	0.0	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|410671878|ref|YP_006924249.1|	-	0.0027	17.6	0.2	0.0054	16.7	0.2	1.5	1	0	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|410671878|ref|YP_006924249.1|	-	0.0041	16.8	0.2	0.0089	15.7	0.2	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|410671878|ref|YP_006924249.1|	-	0.0056	17.1	0.1	0.0068	16.8	0.1	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
PhoH	PF02562.16	gi|410671878|ref|YP_006924249.1|	-	0.0071	15.8	0.1	2	7.8	0.0	2.1	2	0	0	2	2	2	2	PhoH-like	protein
AAA_22	PF13401.6	gi|410671878|ref|YP_006924249.1|	-	0.0088	16.3	0.0	0.017	15.4	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
NTPase_1	PF03266.15	gi|410671878|ref|YP_006924249.1|	-	0.011	15.7	0.3	2.5	8.0	0.1	2.2	2	0	0	2	2	2	0	NTPase
NB-ARC	PF00931.22	gi|410671878|ref|YP_006924249.1|	-	0.074	12.2	0.1	0.11	11.6	0.1	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_13	PF13166.6	gi|410671878|ref|YP_006924249.1|	-	0.081	11.6	0.0	8	5.0	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_21	PF13304.6	gi|410671878|ref|YP_006924249.1|	-	0.12	12.2	0.3	0.85	9.4	0.1	2.0	1	1	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Zeta_toxin	PF06414.12	gi|410671878|ref|YP_006924249.1|	-	0.13	11.6	0.0	0.21	10.8	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
NACHT	PF05729.12	gi|410671878|ref|YP_006924249.1|	-	0.15	12.0	0.0	0.25	11.3	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
DUF2318	PF10080.9	gi|410671879|ref|YP_006924250.1|	-	4.7e-09	36.3	0.1	8.2e-09	35.5	0.1	1.4	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2318)
OrfB_Zn_ribbon	PF07282.11	gi|410671879|ref|YP_006924250.1|	-	0.0051	16.7	0.3	0.0086	16.0	0.3	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|410671879|ref|YP_006924250.1|	-	0.22	11.1	1.7	0.42	10.2	1.7	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
ADH_zinc_N_2	PF13602.6	gi|410671880|ref|YP_006924251.1|	-	1.3e-27	97.4	0.2	2.9e-27	96.3	0.2	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N	PF00107.26	gi|410671880|ref|YP_006924251.1|	-	6.6e-18	64.9	0.1	1.9e-17	63.5	0.1	1.8	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|410671880|ref|YP_006924251.1|	-	9.4e-10	38.3	0.0	3.1e-09	36.7	0.0	1.8	1	1	1	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
AlaDh_PNT_C	PF01262.21	gi|410671880|ref|YP_006924251.1|	-	0.00031	20.1	0.1	0.00066	19.0	0.1	1.5	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
CMAS	PF02353.20	gi|410671880|ref|YP_006924251.1|	-	0.0067	15.8	0.2	0.013	14.8	0.1	1.5	1	1	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
NmrA	PF05368.13	gi|410671880|ref|YP_006924251.1|	-	0.075	12.6	0.2	1.2	8.6	0.0	2.5	3	0	0	3	3	3	0	NmrA-like	family
SHOCT	PF09851.9	gi|410671880|ref|YP_006924251.1|	-	0.09	12.5	0.0	0.24	11.2	0.0	1.8	1	0	0	1	1	1	0	Short	C-terminal	domain
tRNA_bind_4	PF18490.1	gi|410671881|ref|YP_006924252.1|	-	6.6e-60	201.5	0.0	1e-59	200.9	0.0	1.3	1	0	0	1	1	1	1	tRNA-binding	domain
tRNA-synt_2b	PF00587.25	gi|410671881|ref|YP_006924252.1|	-	1.1e-06	28.7	0.0	2e-06	27.9	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
UDG	PF03167.19	gi|410671882|ref|YP_006924253.1|	-	4.3e-38	130.7	0.0	5.8e-38	130.3	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
DHHA1	PF02272.19	gi|410671884|ref|YP_006924255.1|	-	1.4e-15	57.9	0.5	3.9e-15	56.5	0.1	1.9	1	1	1	2	2	2	1	DHHA1	domain
DHH	PF01368.20	gi|410671884|ref|YP_006924255.1|	-	0.029	14.6	0.6	0.063	13.5	0.3	1.7	2	0	0	2	2	2	0	DHH	family
NTP_transferase	PF00483.23	gi|410671885|ref|YP_006924256.1|	-	1.3e-47	162.5	0.0	1.8e-47	162.0	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.24	gi|410671885|ref|YP_006924256.1|	-	3.8e-14	51.8	20.6	5.8e-10	38.5	2.4	5.2	3	1	3	6	6	6	3	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.7	gi|410671885|ref|YP_006924256.1|	-	1.8e-13	51.2	0.0	2.5e-13	50.7	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|410671885|ref|YP_006924256.1|	-	1.7e-06	28.0	0.0	3.7e-06	26.9	0.0	1.5	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Hexapep_2	PF14602.6	gi|410671885|ref|YP_006924256.1|	-	7.8e-06	25.5	3.8	7.8e-06	25.5	3.8	4.1	4	0	0	4	4	4	1	Hexapeptide	repeat	of	succinyl-transferase
CTP_transf_3	PF02348.19	gi|410671885|ref|YP_006924256.1|	-	0.00045	20.2	0.0	0.00073	19.5	0.0	1.2	1	0	0	1	1	1	1	Cytidylyltransferase
DUF4954	PF16314.5	gi|410671885|ref|YP_006924256.1|	-	0.0065	14.7	1.5	0.01	14.0	1.5	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4954)
NAD_binding_10	PF13460.6	gi|410671885|ref|YP_006924256.1|	-	0.13	12.2	0.0	0.21	11.5	0.0	1.3	1	0	0	1	1	1	0	NAD(P)H-binding
PGM_PMM_I	PF02878.16	gi|410671886|ref|YP_006924257.1|	-	3.6e-38	130.4	0.0	6.2e-38	129.6	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|410671886|ref|YP_006924257.1|	-	1.5e-25	89.8	0.1	3.4e-25	88.6	0.1	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.16	gi|410671886|ref|YP_006924257.1|	-	6.6e-21	74.6	0.0	1.2e-20	73.9	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.20	gi|410671886|ref|YP_006924257.1|	-	1.2e-09	38.2	0.0	3.4e-09	36.7	0.0	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
SIS	PF01380.22	gi|410671887|ref|YP_006924258.1|	-	3.6e-60	201.6	2.4	1.2e-31	109.3	0.1	2.9	3	0	0	3	3	3	2	SIS	domain
GATase_6	PF13522.6	gi|410671887|ref|YP_006924258.1|	-	8.5e-21	74.6	0.3	4.1e-20	72.3	0.0	2.2	3	0	0	3	3	3	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|410671887|ref|YP_006924258.1|	-	5e-14	52.3	0.0	1e-13	51.3	0.0	1.6	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
DUF5124	PF17160.4	gi|410671887|ref|YP_006924258.1|	-	0.00079	20.1	0.0	0.0019	18.9	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5124)
GATase_4	PF13230.6	gi|410671887|ref|YP_006924258.1|	-	0.0062	15.5	0.0	0.011	14.6	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
UTP15_C	PF09384.10	gi|410671887|ref|YP_006924258.1|	-	0.052	13.2	0.2	0.097	12.4	0.2	1.4	1	0	0	1	1	1	0	UTP15	C	terminal
DUF1725	PF08333.11	gi|410671887|ref|YP_006924258.1|	-	2.2	8.1	4.0	1.3	8.7	0.1	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1725)
NTP_transferase	PF00483.23	gi|410671888|ref|YP_006924259.1|	-	1.1e-31	110.3	0.0	1.5e-31	109.9	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.24	gi|410671888|ref|YP_006924259.1|	-	1.1e-16	59.8	27.8	7.3e-10	38.2	4.8	5.7	3	1	3	7	7	7	5	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.7	gi|410671888|ref|YP_006924259.1|	-	4.1e-09	37.0	0.0	5.2e-09	36.7	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep_2	PF14602.6	gi|410671888|ref|YP_006924259.1|	-	8.4e-09	35.0	26.4	7.2e-07	28.9	2.5	4.8	4	1	0	4	4	4	3	Hexapeptide	repeat	of	succinyl-transferase
Fucokinase	PF07959.12	gi|410671888|ref|YP_006924259.1|	-	0.0021	17.1	7.1	1.4	7.7	3.0	3.1	1	1	1	3	3	3	2	L-fucokinase
Glyco_tranf_2_3	PF13641.6	gi|410671888|ref|YP_006924259.1|	-	0.095	12.6	0.0	0.24	11.2	0.0	1.6	2	0	0	2	2	2	0	Glycosyltransferase	like	family	2
DUF4954	PF16314.5	gi|410671888|ref|YP_006924259.1|	-	0.98	7.5	8.1	0.2	9.8	4.7	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4954)
Ribosomal_S15	PF00312.22	gi|410671889|ref|YP_006924260.1|	-	1.7e-14	53.8	1.2	2.2e-14	53.4	1.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S15
Ribosomal_S13_N	PF08069.12	gi|410671889|ref|YP_006924260.1|	-	1.6e-10	40.9	0.1	3.6e-10	39.7	0.1	1.6	1	0	0	1	1	1	1	Ribosomal	S13/S15	N-terminal	domain
Antigen_Bd37	PF11641.8	gi|410671889|ref|YP_006924260.1|	-	0.036	13.6	0.1	0.047	13.2	0.1	1.2	1	0	0	1	1	1	0	Glycosylphosphatidylinositol-anchored	merozoite	surface	protein
DUF772	PF05598.11	gi|410671892|ref|YP_006924263.1|	-	3.9e-22	78.1	0.1	1e-21	76.7	0.0	1.7	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|410671892|ref|YP_006924263.1|	-	1.5e-14	54.2	0.1	2.9e-14	53.2	0.1	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_4	PF13359.6	gi|410671892|ref|YP_006924263.1|	-	0.00025	20.8	0.1	0.00045	19.9	0.1	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1_3	PF13612.6	gi|410671892|ref|YP_006924263.1|	-	0.00048	20.2	0.1	0.001	19.1	0.1	1.6	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|410671892|ref|YP_006924263.1|	-	0.036	14.3	0.2	0.069	13.4	0.2	1.4	1	0	0	1	1	1	0	Transposase	DDE	domain
tRNA-synt_His	PF13393.6	gi|410671897|ref|YP_006924268.1|	-	7.1e-63	212.7	0.0	8.8e-63	212.4	0.0	1.1	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
tRNA-synt_2b	PF00587.25	gi|410671897|ref|YP_006924268.1|	-	7e-17	62.0	0.0	1e-16	61.4	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|410671897|ref|YP_006924268.1|	-	1.5e-09	37.9	0.0	2.8e-09	37.0	0.0	1.5	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2	PF00152.20	gi|410671897|ref|YP_006924268.1|	-	1.8e-07	30.6	0.8	0.0028	16.8	0.1	2.8	2	1	0	2	2	2	2	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA-synt_2d	PF01409.20	gi|410671897|ref|YP_006924268.1|	-	0.00019	21.0	0.1	0.0015	18.0	0.0	2.2	2	1	0	2	2	2	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA_synthFbeta	PF17759.1	gi|410671897|ref|YP_006924268.1|	-	0.00029	20.3	0.1	0.00059	19.3	0.1	1.5	1	0	0	1	1	1	1	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
PALP	PF00291.25	gi|410671898|ref|YP_006924269.1|	-	1.1e-41	143.2	0.0	1.3e-41	142.9	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Glyco_hydro_15	PF00723.21	gi|410671899|ref|YP_006924270.1|	-	0.0031	16.3	0.2	0.077	11.8	0.5	2.3	1	1	1	2	2	2	2	Glycosyl	hydrolases	family	15
Prenyltrans	PF00432.21	gi|410671899|ref|YP_006924270.1|	-	0.033	13.9	0.0	25	4.7	0.0	3.4	3	0	0	3	3	3	0	Prenyltransferase	and	squalene	oxidase	repeat
Hydrolase_3	PF08282.12	gi|410671901|ref|YP_006924272.1|	-	5.5e-19	68.9	0.0	7.7e-19	68.4	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|410671901|ref|YP_006924272.1|	-	1.1e-06	28.4	0.0	0.014	14.9	0.0	2.1	2	0	0	2	2	2	2	Sucrose-6F-phosphate	phosphohydrolase
Hydrolase_6	PF13344.6	gi|410671901|ref|YP_006924272.1|	-	1.8e-06	28.0	0.0	3.9e-06	26.9	0.0	1.5	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|410671901|ref|YP_006924272.1|	-	9.5e-05	22.9	1.9	0.057	13.8	0.0	2.7	2	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|410671901|ref|YP_006924272.1|	-	0.0012	19.1	1.3	2.9	8.1	0.1	3.1	2	1	1	3	3	3	2	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|410671901|ref|YP_006924272.1|	-	0.0039	17.3	1.0	0.078	13.1	0.3	2.8	3	1	0	3	3	3	1	Haloacid	dehalogenase-like	hydrolase
DEAD	PF00270.29	gi|410671902|ref|YP_006924273.1|	-	3.1e-25	88.9	0.0	8.7e-25	87.5	0.0	1.7	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|410671902|ref|YP_006924273.1|	-	1.5e-09	38.1	0.0	2.7e-09	37.3	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|410671902|ref|YP_006924273.1|	-	6.6e-08	32.9	0.0	1.8e-06	28.3	0.0	3.0	2	1	0	2	2	2	1	Helicase	conserved	C-terminal	domain
HHH_5	PF14520.6	gi|410671902|ref|YP_006924273.1|	-	3e-07	30.9	0.1	1.9e-06	28.4	0.1	2.4	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.9	gi|410671902|ref|YP_006924273.1|	-	4.8e-06	26.3	0.0	1.5e-05	24.7	0.0	1.9	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
HHH_2	PF12826.7	gi|410671902|ref|YP_006924273.1|	-	0.089	12.9	0.3	0.76	9.9	0.0	2.7	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
Cdd1	PF11731.8	gi|410671902|ref|YP_006924273.1|	-	0.095	13.0	0.0	0.19	12.0	0.0	1.5	1	0	0	1	1	1	0	Pathogenicity	locus
Sec63	PF02889.16	gi|410671902|ref|YP_006924273.1|	-	0.13	11.4	0.0	0.19	10.8	0.0	1.2	1	0	0	1	1	1	0	Sec63	Brl	domain
Histidinol_dh	PF00815.20	gi|410671903|ref|YP_006924274.1|	-	5.9e-169	562.4	1.9	7.1e-169	562.1	1.9	1.0	1	0	0	1	1	1	1	Histidinol	dehydrogenase
DUF2587	PF10759.9	gi|410671903|ref|YP_006924274.1|	-	2.2	7.8	4.4	1.3	8.5	0.1	2.5	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF2587)
DUF1699	PF08004.11	gi|410671904|ref|YP_006924275.1|	-	2.4e-63	211.6	1.4	2.7e-63	211.4	1.4	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1699)
Img2	PF05046.14	gi|410671904|ref|YP_006924275.1|	-	0.027	14.8	0.1	0.067	13.5	0.1	1.6	1	1	1	2	2	2	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
GCR1_C	PF12550.8	gi|410671904|ref|YP_006924275.1|	-	0.034	14.5	0.0	0.077	13.3	0.0	1.6	1	1	0	1	1	1	0	Transcriptional	activator	of	glycolytic	enzymes
Col_cuticle_N	PF01484.17	gi|410671905|ref|YP_006924276.1|	-	1.1	9.4	3.2	10	6.3	0.5	3.4	3	1	0	3	3	3	0	Nematode	cuticle	collagen	N-terminal	domain
TP_methylase	PF00590.20	gi|410671906|ref|YP_006924277.1|	-	2.9e-55	187.5	0.1	3.4e-55	187.3	0.1	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Radical_SAM	PF04055.21	gi|410671906|ref|YP_006924277.1|	-	0.0043	17.5	0.0	0.0078	16.6	0.0	1.5	1	1	0	1	1	1	1	Radical	SAM	superfamily
HEM4	PF02602.15	gi|410671907|ref|YP_006924278.1|	-	1.4e-38	132.6	0.0	1.6e-38	132.4	0.0	1.0	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
Aa_trans	PF01490.18	gi|410671907|ref|YP_006924278.1|	-	0.014	14.2	0.0	0.018	13.7	0.0	1.1	1	0	0	1	1	1	0	Transmembrane	amino	acid	transporter	protein
Nitro_FeMo-Co	PF02579.17	gi|410671907|ref|YP_006924278.1|	-	0.016	15.5	0.1	1.1	9.6	0.0	2.4	2	0	0	2	2	2	0	Dinitrogenase	iron-molybdenum	cofactor
DUF5010	PF16402.5	gi|410671907|ref|YP_006924278.1|	-	0.12	11.2	0.0	0.33	9.7	0.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5010)
Radical_SAM	PF04055.21	gi|410671908|ref|YP_006924279.1|	-	1.5e-23	84.0	0.2	7.3e-23	81.8	0.1	2.1	1	1	1	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|410671908|ref|YP_006924279.1|	-	9.2e-13	48.6	0.0	1.8e-12	47.7	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|410671908|ref|YP_006924279.1|	-	3.1e-07	30.5	0.1	8e-07	29.2	0.0	1.8	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|410671908|ref|YP_006924279.1|	-	1.1e-05	25.8	0.1	1.1e-05	25.8	0.1	2.1	2	0	0	2	2	2	1	Iron-sulfur	cluster-binding	domain
AP_endonuc_2	PF01261.24	gi|410671908|ref|YP_006924279.1|	-	0.083	12.3	0.0	3.6	7.0	0.0	2.4	1	1	1	2	2	2	0	Xylose	isomerase-like	TIM	barrel
B	PF02216.16	gi|410671908|ref|YP_006924279.1|	-	0.17	11.9	0.0	0.34	10.9	0.0	1.5	1	0	0	1	1	1	0	B	domain
YgbA_NO	PF11756.8	gi|410671908|ref|YP_006924279.1|	-	0.52	10.7	2.9	0.33	11.3	0.6	1.9	2	0	0	2	2	2	0	Nitrous	oxide-stimulated	promoter
Desulfoferrodox	PF01880.18	gi|410671909|ref|YP_006924280.1|	-	5.4e-25	87.8	1.2	6.2e-25	87.6	1.2	1.0	1	0	0	1	1	1	1	Desulfoferrodoxin
tRNA-synt_1	PF00133.22	gi|410671911|ref|YP_006924282.1|	-	3.6e-127	425.1	1.0	5.3e-126	421.3	1.0	2.0	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|410671911|ref|YP_006924282.1|	-	5.6e-38	130.3	0.0	9.7e-38	129.5	0.0	1.3	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|410671911|ref|YP_006924282.1|	-	2.4e-23	82.5	0.0	7.7e-12	44.7	0.0	3.5	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.19	gi|410671911|ref|YP_006924282.1|	-	2.8e-07	30.2	0.0	0.00032	20.2	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1_2	PF13603.6	gi|410671911|ref|YP_006924282.1|	-	0.0016	18.0	0.0	0.018	14.6	0.0	2.2	1	1	1	2	2	2	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1f	PF01921.18	gi|410671911|ref|YP_006924282.1|	-	0.0064	15.5	0.0	0.034	13.0	0.0	2.1	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
PUA	PF01472.20	gi|410671912|ref|YP_006924283.1|	-	8.3e-19	67.3	0.8	1.5e-18	66.5	0.8	1.4	1	0	0	1	1	1	1	PUA	domain
Pre-PUA	PF17832.1	gi|410671912|ref|YP_006924283.1|	-	0.00061	20.4	0.4	0.0015	19.1	0.1	1.8	2	1	0	2	2	2	1	Pre-PUA-like	domain
UPF0113	PF03657.13	gi|410671912|ref|YP_006924283.1|	-	0.014	15.6	0.0	0.024	14.9	0.0	1.4	1	0	0	1	1	1	0	UPF0113	PUA	domain
DUF1947	PF09183.10	gi|410671912|ref|YP_006924283.1|	-	0.05	13.9	0.2	0.085	13.2	0.2	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1947)
A2L_zn_ribbon	PF08792.10	gi|410671913|ref|YP_006924284.1|	-	0.017	14.8	0.2	0.025	14.3	0.2	1.3	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
SepF	PF04472.12	gi|410671914|ref|YP_006924285.1|	-	3.5e-12	46.4	1.1	5.1e-12	45.9	1.1	1.2	1	0	0	1	1	1	1	Cell	division	protein	SepF
Coatamer_beta_C	PF07718.12	gi|410671914|ref|YP_006924285.1|	-	0.0066	16.4	0.7	0.0076	16.2	0.7	1.1	1	0	0	1	1	1	1	Coatomer	beta	C-terminal	region
Transposase_31	PF04754.12	gi|410671914|ref|YP_006924285.1|	-	0.024	14.2	0.1	0.032	13.8	0.1	1.2	1	0	0	1	1	1	0	Putative	transposase,	YhgA-like
zf-ZPR1	PF03367.13	gi|410671915|ref|YP_006924286.1|	-	1.1e-34	119.6	0.0	1.4e-34	119.2	0.0	1.2	1	0	0	1	1	1	1	ZPR1	zinc-finger	domain
DUF3943	PF13084.6	gi|410671915|ref|YP_006924286.1|	-	0.056	13.3	0.0	0.42	10.5	0.0	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3943)
AhpC-TSA	PF00578.21	gi|410671916|ref|YP_006924287.1|	-	1.6e-28	99.1	0.0	2e-28	98.8	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|410671916|ref|YP_006924287.1|	-	1.4e-10	41.1	0.0	5.9e-10	39.0	0.0	1.9	1	1	0	1	1	1	1	Redoxin
1-cysPrx_C	PF10417.9	gi|410671916|ref|YP_006924287.1|	-	3.3e-10	39.7	0.7	5.7e-10	38.9	0.7	1.4	1	0	0	1	1	1	1	C-terminal	domain	of	1-Cys	peroxiredoxin
HipA_C	PF07804.12	gi|410671916|ref|YP_006924287.1|	-	0.054	13.2	0.0	0.068	12.8	0.0	1.1	1	0	0	1	1	1	0	HipA-like	C-terminal	domain
P_C10	PF14974.6	gi|410671916|ref|YP_006924287.1|	-	0.19	11.8	0.0	0.71	10.0	0.0	1.9	1	1	1	2	2	2	0	Protein	C10
tRNA-synt_2b	PF00587.25	gi|410671917|ref|YP_006924288.1|	-	1.6e-26	93.4	0.0	2.3e-26	92.8	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|410671917|ref|YP_006924288.1|	-	1.3e-19	70.1	0.0	2.6e-19	69.1	0.0	1.4	1	0	0	1	1	1	1	Anticodon	binding	domain
ProRS-C_1	PF09180.11	gi|410671917|ref|YP_006924288.1|	-	4.5e-14	52.4	0.5	1e-13	51.3	0.5	1.6	1	0	0	1	1	1	1	Prolyl-tRNA	synthetase,	C-terminal
Response_reg	PF00072.24	gi|410671919|ref|YP_006924290.1|	-	1.1e-29	102.9	0.5	3.3e-29	101.3	0.1	1.8	1	1	1	2	2	2	1	Response	regulator	receiver	domain
PAS	PF00989.25	gi|410671919|ref|YP_006924290.1|	-	2.5e-08	33.9	0.0	4.7e-08	33.0	0.0	1.4	1	0	0	1	1	1	1	PAS	fold
PAS_3	PF08447.12	gi|410671919|ref|YP_006924290.1|	-	1.5e-06	28.4	0.0	3.9e-06	27.1	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.10	gi|410671919|ref|YP_006924290.1|	-	2.2e-06	27.9	0.0	5e-06	26.7	0.0	1.6	2	0	0	2	2	2	1	PAS	fold
PAS_9	PF13426.7	gi|410671919|ref|YP_006924290.1|	-	3e-05	24.2	0.0	8.3e-05	22.8	0.0	1.7	2	0	0	2	2	2	1	PAS	domain
DUF2101	PF09874.9	gi|410671919|ref|YP_006924290.1|	-	0.046	13.4	0.1	0.075	12.7	0.1	1.3	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2101)
Ribosomal_L15e	PF00827.17	gi|410671920|ref|YP_006924291.1|	-	1.6e-84	282.4	7.7	1.9e-84	282.2	7.7	1.0	1	0	0	1	1	1	1	Ribosomal	L15
DUF5490	PF17593.2	gi|410671920|ref|YP_006924291.1|	-	0.08	13.0	0.0	2.7	8.1	0.0	2.3	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5490)
RNA_binding	PF01877.17	gi|410671921|ref|YP_006924292.1|	-	4.8e-35	120.4	0.0	5.6e-35	120.2	0.0	1.0	1	0	0	1	1	1	1	RNA	binding
RNase_P_p30	PF01876.16	gi|410671922|ref|YP_006924293.1|	-	2.9e-37	128.2	0.0	4.3e-37	127.7	0.0	1.2	1	0	0	1	1	1	1	RNase	P	subunit	p30
PHP	PF02811.19	gi|410671922|ref|YP_006924293.1|	-	0.049	13.9	0.0	0.053	13.8	0.0	1.3	1	1	0	1	1	1	0	PHP	domain
RNase_P_Rpp14	PF01900.19	gi|410671923|ref|YP_006924294.1|	-	1.2e-16	60.8	0.0	1.5e-16	60.5	0.0	1.1	1	0	0	1	1	1	1	Rpp14/Pop5	family
Proteasome	PF00227.26	gi|410671924|ref|YP_006924295.1|	-	1.3e-59	200.9	0.4	1.8e-59	200.4	0.4	1.2	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.9	gi|410671924|ref|YP_006924295.1|	-	8.4e-15	54.1	0.2	4.4e-14	51.8	0.1	2.1	2	0	0	2	2	2	1	Proteasome	subunit	A	N-terminal	signature
SBDS	PF01172.18	gi|410671925|ref|YP_006924296.1|	-	1.1e-25	89.5	0.2	1.9e-25	88.7	0.2	1.4	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
SBDS_C	PF09377.10	gi|410671925|ref|YP_006924296.1|	-	8.6e-22	77.3	0.8	1.4e-21	76.7	0.8	1.3	1	0	0	1	1	1	1	SBDS	protein	C-terminal	domain
KH_6	PF15985.5	gi|410671926|ref|YP_006924297.1|	-	6e-10	39.3	1.2	8.3e-10	38.9	0.3	1.7	2	0	0	2	2	2	1	KH	domain
ECR1_N	PF14382.6	gi|410671926|ref|YP_006924297.1|	-	2.6e-08	33.5	0.1	6.1e-08	32.3	0.1	1.6	1	0	0	1	1	1	1	Exosome	complex	exonuclease	RRP4	N-terminal	region
KH_1	PF00013.29	gi|410671926|ref|YP_006924297.1|	-	5.4e-06	26.1	0.1	1.4e-05	24.8	0.1	1.8	1	0	0	1	1	1	1	KH	domain
KH_2	PF07650.17	gi|410671926|ref|YP_006924297.1|	-	0.00026	20.7	0.1	0.00065	19.5	0.1	1.6	1	0	0	1	1	1	1	KH	domain
S1	PF00575.23	gi|410671926|ref|YP_006924297.1|	-	0.0016	18.7	0.0	0.0059	16.9	0.0	2.0	2	0	0	2	2	2	1	S1	RNA	binding	domain
HTH_10	PF04967.12	gi|410671926|ref|YP_006924297.1|	-	0.13	12.1	0.0	0.35	10.7	0.0	1.7	1	0	0	1	1	1	0	HTH	DNA	binding	domain
RNase_PH	PF01138.21	gi|410671927|ref|YP_006924298.1|	-	1.2e-32	113.2	0.3	2.5e-32	112.2	0.0	1.7	2	0	0	2	2	2	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.15	gi|410671927|ref|YP_006924298.1|	-	2e-18	66.2	0.1	5.8e-18	64.7	0.2	1.8	2	0	0	2	2	2	1	3'	exoribonuclease	family,	domain	2
RNase_PH	PF01138.21	gi|410671928|ref|YP_006924299.1|	-	1.4e-26	93.6	0.0	2.2e-26	92.9	0.0	1.3	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.15	gi|410671928|ref|YP_006924299.1|	-	8.7e-09	35.3	0.8	1.6e-08	34.4	0.4	1.7	2	0	0	2	2	2	1	3'	exoribonuclease	family,	domain	2
Ribosomal_L37ae	PF01780.19	gi|410671929|ref|YP_006924300.1|	-	1.5e-30	105.1	4.8	1.9e-30	104.8	4.8	1.1	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
C1_1	PF00130.22	gi|410671929|ref|YP_006924300.1|	-	0.034	14.0	2.1	0.052	13.5	2.1	1.2	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Rep_fac-A_C	PF08646.10	gi|410671929|ref|YP_006924300.1|	-	0.046	13.5	0.3	0.057	13.2	0.3	1.1	1	0	0	1	1	1	0	Replication	factor-A	C	terminal	domain
Zn_Tnp_IS1595	PF12760.7	gi|410671929|ref|YP_006924300.1|	-	0.13	12.3	4.5	0.2	11.7	4.5	1.3	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-H2C2_2	PF13465.6	gi|410671929|ref|YP_006924300.1|	-	0.3	11.6	0.5	0.3	11.6	0.5	1.9	2	0	0	2	2	2	0	Zinc-finger	double	domain
DNA_RNApol_7kD	PF03604.13	gi|410671930|ref|YP_006924301.1|	-	2.2e-08	33.6	8.7	3.3e-08	33.1	8.7	1.3	1	0	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf_UBZ	PF18439.1	gi|410671930|ref|YP_006924301.1|	-	0.00011	21.6	1.6	0.25	11.0	0.0	2.1	1	1	1	2	2	2	2	Ubiquitin-Binding	Zinc	Finger
TF_Zn_Ribbon	PF08271.12	gi|410671930|ref|YP_006924301.1|	-	0.00077	18.9	1.5	0.00092	18.7	1.5	1.2	1	0	0	1	1	1	1	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|410671930|ref|YP_006924301.1|	-	0.00098	18.4	0.8	0.0079	15.6	0.1	2.0	2	0	0	2	2	2	1	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|410671930|ref|YP_006924301.1|	-	0.0013	18.6	1.9	0.0019	18.1	1.9	1.4	1	1	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HypA	PF01155.19	gi|410671930|ref|YP_006924301.1|	-	0.0017	18.3	0.4	0.0017	18.3	0.4	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_2	PF13240.6	gi|410671930|ref|YP_006924301.1|	-	0.005	16.5	2.7	0.0093	15.7	2.7	1.4	1	1	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_9	PF14369.6	gi|410671930|ref|YP_006924301.1|	-	0.0066	16.7	1.1	0.0092	16.2	1.1	1.2	1	0	0	1	1	1	1	zinc-ribbon
DUF951	PF06107.11	gi|410671930|ref|YP_006924301.1|	-	0.0071	16.2	2.8	0.1	12.5	0.1	2.0	1	1	1	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF951)
A2L_zn_ribbon	PF08792.10	gi|410671930|ref|YP_006924301.1|	-	0.0092	15.7	2.0	0.51	10.1	0.4	2.1	2	0	0	2	2	2	1	A2L	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|410671930|ref|YP_006924301.1|	-	0.011	15.9	4.6	0.022	14.9	4.6	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
Cys_rich_CPXG	PF14255.6	gi|410671930|ref|YP_006924301.1|	-	0.011	15.6	1.8	0.048	13.6	0.2	2.0	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
Anti-TRAP	PF15777.5	gi|410671930|ref|YP_006924301.1|	-	0.015	15.3	0.1	0.015	15.2	0.1	1.1	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
DZR	PF12773.7	gi|410671930|ref|YP_006924301.1|	-	0.028	14.4	1.1	0.15	12.1	1.4	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.7	gi|410671930|ref|YP_006924301.1|	-	0.036	14.0	5.3	0.14	12.2	0.1	2.1	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
RNHCP	PF12647.7	gi|410671930|ref|YP_006924301.1|	-	0.041	13.9	0.2	0.045	13.7	0.2	1.1	1	0	0	1	1	1	0	RNHCP	domain
DUF2072	PF09845.9	gi|410671930|ref|YP_006924301.1|	-	0.055	13.7	0.3	0.055	13.7	0.3	1.1	1	0	0	1	1	1	0	Zn-ribbon	containing	protein
Sgf11	PF08209.11	gi|410671930|ref|YP_006924301.1|	-	0.068	12.7	2.7	2.3	7.8	0.5	2.1	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
TFIIS_C	PF01096.18	gi|410671930|ref|YP_006924301.1|	-	0.071	13.0	2.4	4.2	7.3	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
CpXC	PF14353.6	gi|410671930|ref|YP_006924301.1|	-	0.076	13.1	1.3	0.5	10.4	0.1	2.0	1	1	1	2	2	2	0	CpXC	protein
zinc_ribbon_6	PF14599.6	gi|410671930|ref|YP_006924301.1|	-	0.078	13.0	1.6	0.097	12.7	1.6	1.2	1	0	0	1	1	1	0	Zinc-ribbon
zinc_ribbon_4	PF13717.6	gi|410671930|ref|YP_006924301.1|	-	0.082	12.8	4.0	1.9	8.5	4.0	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
DiS_P_DiS	PF06750.13	gi|410671930|ref|YP_006924301.1|	-	0.39	10.9	2.3	11	6.2	0.1	2.0	1	1	1	2	2	2	0	Bacterial	Peptidase	A24	N-terminal	domain
Zn_ribbon_SprT	PF17283.2	gi|410671930|ref|YP_006924301.1|	-	0.52	10.3	9.5	9.9	6.2	8.7	2.4	1	1	1	2	2	2	0	SprT-like	zinc	ribbon	domain
DUF2584	PF10763.9	gi|410671932|ref|YP_006924303.1|	-	0.14	12.3	0.0	0.15	12.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2584)
Prefoldin_2	PF01920.20	gi|410671933|ref|YP_006924304.1|	-	1.4e-19	70.0	23.3	1.6e-19	69.8	23.3	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
SRP54	PF00448.22	gi|410671933|ref|YP_006924304.1|	-	0.049	13.3	5.3	0.058	13.0	5.3	1.1	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
DivIC	PF04977.15	gi|410671933|ref|YP_006924304.1|	-	0.25	11.1	17.1	0.21	11.4	7.0	2.4	2	0	0	2	2	2	0	Septum	formation	initiator
Nup54	PF13874.6	gi|410671933|ref|YP_006924304.1|	-	0.55	10.3	19.0	6	7.0	19.0	2.0	1	1	0	1	1	1	0	Nucleoporin	complex	subunit	54
Sec34	PF04136.15	gi|410671933|ref|YP_006924304.1|	-	0.83	9.5	13.4	0.94	9.3	3.4	2.2	2	0	0	2	2	2	0	Sec34-like	family
DASH_Dam1	PF08653.10	gi|410671933|ref|YP_006924304.1|	-	1.1	9.1	4.5	1.2	9.0	0.1	2.7	2	2	0	2	2	2	0	DASH	complex	subunit	Dam1
FlaC_arch	PF05377.11	gi|410671933|ref|YP_006924304.1|	-	1.2	9.6	11.6	0.55	10.7	1.0	2.7	2	1	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DUF4795	PF16043.5	gi|410671933|ref|YP_006924304.1|	-	4.4	6.8	16.8	0.36	10.4	2.8	2.1	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4795)
DHR10	PF18595.1	gi|410671933|ref|YP_006924304.1|	-	5	7.2	25.6	0.33	11.0	7.3	2.2	1	1	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
DHH	PF01368.20	gi|410671934|ref|YP_006924305.1|	-	9.6e-11	41.8	1.6	1.4e-10	41.3	0.2	1.9	2	1	0	2	2	2	1	DHH	family
DHHA1	PF02272.19	gi|410671934|ref|YP_006924305.1|	-	3.2e-09	37.3	1.9	6.3e-09	36.4	1.9	1.4	1	0	0	1	1	1	1	DHHA1	domain
Phage_sheath_1N	PF17481.2	gi|410671934|ref|YP_006924305.1|	-	0.022	15.2	0.1	0.41	11.1	0.0	2.3	2	0	0	2	2	2	0	Phage	tail	sheath	protein	beta-sandwich	domain
AMP-binding_C_2	PF14535.6	gi|410671935|ref|YP_006924306.1|	-	6.5e-33	112.9	0.8	1.5e-32	111.8	0.8	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
AMP-binding	PF00501.28	gi|410671935|ref|YP_006924306.1|	-	1.7e-14	53.3	0.9	1.9e-14	53.1	0.1	1.5	2	0	0	2	2	2	1	AMP-binding	enzyme
LuxE	PF04443.12	gi|410671935|ref|YP_006924306.1|	-	0.00022	20.4	0.0	0.15	11.1	0.0	2.2	2	0	0	2	2	2	2	Acyl-protein	synthetase,	LuxE
GH3	PF03321.13	gi|410671935|ref|YP_006924306.1|	-	0.001	18.1	0.0	0.32	9.8	0.0	2.2	2	0	0	2	2	2	2	GH3	auxin-responsive	promoter
ACT	PF01842.25	gi|410671936|ref|YP_006924307.1|	-	8.5e-17	60.6	0.5	2.2e-08	33.7	0.0	2.1	2	0	0	2	2	2	2	ACT	domain
ACT_4	PF13291.6	gi|410671936|ref|YP_006924307.1|	-	1.6e-07	31.8	0.2	0.0084	16.7	0.0	2.2	2	0	0	2	2	2	2	ACT	domain
ACT_7	PF13840.6	gi|410671936|ref|YP_006924307.1|	-	0.018	14.8	0.1	4.9	7.0	0.0	2.6	2	1	0	2	2	2	0	ACT	domain
DUF2103	PF09876.9	gi|410671937|ref|YP_006924308.1|	-	2.2e-38	130.2	0.9	2.5e-38	130.0	0.9	1.0	1	0	0	1	1	1	1	Predicted	metal-binding	protein	(DUF2103)
DUF1464	PF07318.12	gi|410671938|ref|YP_006924309.1|	-	0.015	14.5	1.2	0.06	12.5	1.2	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1464)
TPP_enzyme_C	PF02775.21	gi|410671939|ref|YP_006924310.1|	-	5.3e-11	42.5	0.1	1.2e-10	41.4	0.1	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR_N	PF01855.19	gi|410671939|ref|YP_006924310.1|	-	2.2e-07	30.9	0.0	3.5e-07	30.2	0.0	1.2	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
TPP_enzyme_N	PF02776.18	gi|410671939|ref|YP_006924310.1|	-	0.00015	21.4	0.0	0.028	14.0	0.0	2.3	2	0	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Transket_pyr	PF02779.24	gi|410671939|ref|YP_006924310.1|	-	0.0011	18.7	0.0	0.0024	17.6	0.0	1.5	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Laminin_G_3	PF13385.6	gi|410671939|ref|YP_006924310.1|	-	0.15	12.2	0.0	0.3	11.2	0.0	1.4	1	0	0	1	1	1	0	Concanavalin	A-like	lectin/glucanases	superfamily
DUF1743	PF08489.11	gi|410671940|ref|YP_006924311.1|	-	9.2e-11	41.8	0.0	5.6e-06	26.4	0.0	3.5	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF1743)
RadC	PF04002.15	gi|410671941|ref|YP_006924312.1|	-	1.4e-44	150.9	0.0	2.1e-44	150.4	0.0	1.2	1	0	0	1	1	1	1	RadC-like	JAB	domain
HHH_2	PF12826.7	gi|410671941|ref|YP_006924312.1|	-	0.00071	19.6	0.1	0.0014	18.7	0.1	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|410671941|ref|YP_006924312.1|	-	0.0021	18.6	0.0	0.0049	17.4	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
Prok-JAB	PF14464.6	gi|410671941|ref|YP_006924312.1|	-	0.003	17.3	0.0	0.005	16.6	0.0	1.4	1	0	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
HhH-GPD	PF00730.25	gi|410671941|ref|YP_006924312.1|	-	0.021	15.2	0.1	0.03	14.8	0.1	1.4	1	1	0	1	1	1	0	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|410671941|ref|YP_006924312.1|	-	0.089	12.7	0.1	0.29	11.1	0.0	2.0	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
MoaE	PF02391.17	gi|410671942|ref|YP_006924313.1|	-	2.4e-25	89.0	0.1	4.2e-25	88.2	0.1	1.4	1	0	0	1	1	1	1	MoaE	protein
MobB	PF03205.14	gi|410671942|ref|YP_006924313.1|	-	3.3e-16	59.4	0.5	6e-16	58.6	0.1	1.7	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NACHT	PF05729.12	gi|410671942|ref|YP_006924313.1|	-	0.03	14.3	0.1	0.17	11.8	0.0	2.0	2	0	0	2	2	2	0	NACHT	domain
HTH_5	PF01022.20	gi|410671943|ref|YP_006924314.1|	-	1.8e-06	27.7	0.2	3.8e-06	26.7	0.2	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|410671943|ref|YP_006924314.1|	-	1.2e-05	24.8	0.2	3.4e-05	23.3	0.1	1.9	2	0	0	2	2	1	1	Winged	helix-turn-helix	DNA-binding
Put_DNA-bind_N	PF06971.13	gi|410671943|ref|YP_006924314.1|	-	0.0001	22.2	0.2	0.00032	20.6	0.1	1.9	2	0	0	2	2	1	1	Putative	DNA-binding	protein	N-terminus
MarR_2	PF12802.7	gi|410671943|ref|YP_006924314.1|	-	0.00011	22.0	0.3	0.0002	21.2	0.3	1.5	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|410671943|ref|YP_006924314.1|	-	0.00027	20.9	0.4	0.00064	19.7	0.2	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|410671943|ref|YP_006924314.1|	-	0.00042	20.2	1.3	0.00048	20.0	0.2	1.7	2	0	0	2	2	2	1	HTH	domain
Rrf2	PF02082.20	gi|410671943|ref|YP_006924314.1|	-	0.0005	20.4	0.1	0.001	19.4	0.1	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|410671943|ref|YP_006924314.1|	-	0.0006	19.5	0.1	0.0012	18.6	0.1	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|410671943|ref|YP_006924314.1|	-	0.00079	19.3	0.5	0.0016	18.3	0.1	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.21	gi|410671943|ref|YP_006924314.1|	-	0.00079	19.0	0.4	0.002	17.7	0.4	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
PCI	PF01399.27	gi|410671943|ref|YP_006924314.1|	-	0.0016	19.0	0.1	0.0034	17.9	0.0	1.6	2	0	0	2	2	1	1	PCI	domain
MarR	PF01047.22	gi|410671943|ref|YP_006924314.1|	-	0.0019	18.1	0.1	0.0037	17.1	0.1	1.5	1	0	0	1	1	1	1	MarR	family
RPA_C	PF08784.11	gi|410671943|ref|YP_006924314.1|	-	0.0027	18.3	0.0	0.0041	17.7	0.0	1.3	1	0	0	1	1	1	1	Replication	protein	A	C	terminal
HTH_40	PF14493.6	gi|410671943|ref|YP_006924314.1|	-	0.0047	17.3	0.2	0.013	16.0	0.2	1.7	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_CodY	PF08222.11	gi|410671943|ref|YP_006924314.1|	-	0.011	15.3	0.0	0.022	14.3	0.0	1.6	1	1	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_10	PF04967.12	gi|410671943|ref|YP_006924314.1|	-	0.012	15.4	0.5	0.046	13.5	0.1	2.1	2	0	0	2	2	2	0	HTH	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|410671943|ref|YP_006924314.1|	-	0.018	15.0	0.1	0.028	14.4	0.1	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
EAP30	PF04157.16	gi|410671943|ref|YP_006924314.1|	-	0.036	13.4	0.0	0.052	12.8	0.0	1.3	1	0	0	1	1	1	0	EAP30/Vps36	family
Fe_dep_repress	PF01325.19	gi|410671943|ref|YP_006924314.1|	-	0.048	13.9	0.0	0.093	12.9	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Mnd1	PF03962.15	gi|410671943|ref|YP_006924314.1|	-	0.072	13.4	0.0	0.59	10.5	0.1	2.2	1	1	1	2	2	2	0	Mnd1	HTH	domain
Spo0A_C	PF08769.11	gi|410671943|ref|YP_006924314.1|	-	0.096	12.8	0.0	0.22	11.6	0.0	1.7	1	1	0	1	1	1	0	Sporulation	initiation	factor	Spo0A	C	terminal
CtsR	PF05848.11	gi|410671943|ref|YP_006924314.1|	-	0.1	12.5	0.0	0.19	11.7	0.0	1.4	1	0	0	1	1	1	0	CtsR	N-terminal	HTH	domain
HrcA_DNA-bdg	PF03444.15	gi|410671943|ref|YP_006924314.1|	-	0.13	11.9	0.7	1.3	8.8	0.2	2.1	2	0	0	2	2	2	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
GerE	PF00196.19	gi|410671943|ref|YP_006924314.1|	-	0.15	11.6	1.0	0.52	9.9	0.1	2.3	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4_2	PF08281.12	gi|410671943|ref|YP_006924314.1|	-	0.52	10.0	2.9	0.75	9.5	0.0	2.5	3	0	0	3	3	3	0	Sigma-70,	region	4
Cpn10	PF00166.21	gi|410671944|ref|YP_006924315.1|	-	6.7e-23	80.6	0.1	7.4e-23	80.4	0.1	1.0	1	0	0	1	1	1	1	Chaperonin	10	Kd	subunit
Cpn60_TCP1	PF00118.24	gi|410671945|ref|YP_006924316.1|	-	8.8e-101	337.9	21.1	2.2e-100	336.6	21.1	1.6	1	1	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
DEAD	PF00270.29	gi|410671946|ref|YP_006924317.1|	-	6.8e-50	169.2	0.1	1.5e-49	168.1	0.0	1.6	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|410671946|ref|YP_006924317.1|	-	5.3e-31	107.2	0.2	1.3e-30	106.0	0.2	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|410671946|ref|YP_006924317.1|	-	1.4e-08	35.0	0.0	3.2e-08	33.8	0.0	1.6	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
UTP25	PF06862.12	gi|410671946|ref|YP_006924317.1|	-	7.6e-06	25.0	0.1	0.005	15.7	0.0	3.5	2	1	1	3	3	3	1	Utp25,	U3	small	nucleolar	RNA-associated	SSU	processome	protein	25
AAA_30	PF13604.6	gi|410671946|ref|YP_006924317.1|	-	0.00035	20.3	0.0	0.00084	19.1	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|410671946|ref|YP_006924317.1|	-	0.022	15.0	0.1	0.13	12.5	0.1	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|410671946|ref|YP_006924317.1|	-	0.028	14.8	0.9	0.31	11.4	1.0	2.2	1	1	0	1	1	1	0	AAA	domain
ERCC3_RAD25_C	PF16203.5	gi|410671946|ref|YP_006924317.1|	-	0.046	12.9	0.0	0.07	12.3	0.0	1.3	1	0	0	1	1	1	0	ERCC3/RAD25/XPB	C-terminal	helicase
Phage_endo_I	PF05367.11	gi|410671946|ref|YP_006924317.1|	-	0.047	13.3	0.0	5.9	6.5	0.0	2.2	2	0	0	2	2	2	0	Phage	endonuclease	I
Sacchrp_dh_NADP	PF03435.18	gi|410671946|ref|YP_006924317.1|	-	0.15	12.3	0.4	6.1	7.1	0.1	2.4	2	0	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
AAA_2	PF07724.14	gi|410671947|ref|YP_006924318.1|	-	3.4e-57	193.3	0.0	4.3e-52	176.7	0.0	3.0	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_lid_9	PF17871.1	gi|410671947|ref|YP_006924318.1|	-	9.8e-35	118.6	5.1	9.8e-35	118.6	5.1	3.0	3	0	0	3	3	2	1	AAA	lid	domain
ClpB_D2-small	PF10431.9	gi|410671947|ref|YP_006924318.1|	-	7.2e-25	86.9	3.4	1.9e-24	85.5	0.3	3.0	2	0	0	2	2	2	1	C-terminal,	D2-small	domain,	of	ClpB	protein
AAA	PF00004.29	gi|410671947|ref|YP_006924318.1|	-	3.5e-23	82.5	0.1	1.4e-11	45.0	0.0	2.8	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Clp_N	PF02861.20	gi|410671947|ref|YP_006924318.1|	-	5.6e-23	80.8	0.9	4.2e-10	39.6	0.1	3.0	2	0	0	2	2	2	2	Clp	amino	terminal	domain,	pathogenicity	island	component
AAA_5	PF07728.14	gi|410671947|ref|YP_006924318.1|	-	1.2e-17	64.2	0.2	1.3e-12	47.9	0.0	3.4	3	0	0	3	3	3	2	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.6	gi|410671947|ref|YP_006924318.1|	-	7.4e-10	39.5	5.9	2.6e-05	24.7	0.2	4.4	3	2	0	3	3	3	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|410671947|ref|YP_006924318.1|	-	5.9e-09	36.7	4.7	0.019	15.5	0.0	3.6	3	0	0	3	3	3	2	AAA	domain
AAA_22	PF13401.6	gi|410671947|ref|YP_006924318.1|	-	1.2e-08	35.3	0.1	0.014	15.6	0.0	3.9	2	2	0	2	2	2	2	AAA	domain
AAA_14	PF13173.6	gi|410671947|ref|YP_006924318.1|	-	1.9e-08	34.4	0.0	0.0054	16.8	0.0	2.9	2	0	0	2	2	2	2	AAA	domain
Sigma54_activat	PF00158.26	gi|410671947|ref|YP_006924318.1|	-	1.9e-07	30.9	0.0	0.00053	19.7	0.0	2.8	2	1	0	2	2	2	2	Sigma-54	interaction	domain
AAA_7	PF12775.7	gi|410671947|ref|YP_006924318.1|	-	2.3e-07	30.5	0.0	0.0031	17.0	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
TniB	PF05621.11	gi|410671947|ref|YP_006924318.1|	-	1.3e-06	27.9	0.0	0.0012	18.3	0.0	3.7	2	1	0	2	2	2	1	Bacterial	TniB	protein
IstB_IS21	PF01695.17	gi|410671947|ref|YP_006924318.1|	-	1.5e-06	28.1	0.0	0.023	14.4	0.0	2.6	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
Roc	PF08477.13	gi|410671947|ref|YP_006924318.1|	-	8.2e-06	26.0	0.0	0.051	13.8	0.0	2.8	2	0	0	2	2	2	2	Ras	of	Complex,	Roc,	domain	of	DAPkinase
NACHT	PF05729.12	gi|410671947|ref|YP_006924318.1|	-	1.3e-05	25.2	0.0	0.013	15.5	0.0	2.7	2	0	0	2	2	2	1	NACHT	domain
ATPase_2	PF01637.18	gi|410671947|ref|YP_006924318.1|	-	1.8e-05	24.7	6.6	0.45	10.4	0.3	4.3	3	1	0	3	3	2	2	ATPase	domain	predominantly	from	Archaea
RsgA_GTPase	PF03193.16	gi|410671947|ref|YP_006924318.1|	-	1.9e-05	24.7	0.0	0.19	11.6	0.0	2.9	2	0	0	2	2	2	2	RsgA	GTPase
DUF815	PF05673.13	gi|410671947|ref|YP_006924318.1|	-	4.4e-05	22.8	0.3	0.51	9.4	0.1	3.4	3	1	0	3	3	3	2	Protein	of	unknown	function	(DUF815)
AAA_28	PF13521.6	gi|410671947|ref|YP_006924318.1|	-	8e-05	22.9	0.6	0.75	10.0	0.0	3.8	3	0	0	3	3	3	1	AAA	domain
RNA_helicase	PF00910.22	gi|410671947|ref|YP_006924318.1|	-	0.00016	22.0	0.0	0.41	11.1	0.0	2.7	2	0	0	2	2	2	1	RNA	helicase
ABC_tran	PF00005.27	gi|410671947|ref|YP_006924318.1|	-	0.00029	21.3	0.1	0.16	12.5	0.0	3.4	3	0	0	3	3	3	1	ABC	transporter
AAA_18	PF13238.6	gi|410671947|ref|YP_006924318.1|	-	0.00033	21.2	0.6	0.22	12.1	0.0	3.5	3	0	0	3	3	3	1	AAA	domain
TsaE	PF02367.17	gi|410671947|ref|YP_006924318.1|	-	0.00034	20.6	0.0	1.3	9.0	0.0	2.6	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
RuvB_N	PF05496.12	gi|410671947|ref|YP_006924318.1|	-	0.00051	19.8	1.7	1	9.1	0.0	4.1	3	1	0	3	3	3	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
ResIII	PF04851.15	gi|410671947|ref|YP_006924318.1|	-	0.00094	19.2	0.0	0.54	10.2	0.0	3.4	2	1	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
Bac_DnaA	PF00308.18	gi|410671947|ref|YP_006924318.1|	-	0.0024	17.8	0.0	2	8.2	0.0	3.1	2	0	0	2	2	2	1	Bacterial	dnaA	protein
AAA_33	PF13671.6	gi|410671947|ref|YP_006924318.1|	-	0.0034	17.6	0.1	0.47	10.6	0.0	2.9	3	0	0	3	3	2	1	AAA	domain
AAA_19	PF13245.6	gi|410671947|ref|YP_006924318.1|	-	0.0041	17.5	0.0	0.58	10.5	0.1	3.0	2	1	0	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.12	gi|410671947|ref|YP_006924318.1|	-	0.0041	16.4	0.0	0.14	11.4	0.0	2.6	2	0	0	2	2	2	1	Zeta	toxin
AAA_25	PF13481.6	gi|410671947|ref|YP_006924318.1|	-	0.0043	16.7	0.0	0.58	9.7	0.0	2.9	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|410671947|ref|YP_006924318.1|	-	0.0051	16.6	0.4	1.7	8.3	0.1	3.2	2	2	0	2	2	2	1	AAA	domain
T2SSE	PF00437.20	gi|410671947|ref|YP_006924318.1|	-	0.0052	15.9	0.1	0.082	11.9	0.0	2.8	3	0	0	3	3	3	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.6	gi|410671947|ref|YP_006924318.1|	-	0.0064	16.2	0.0	3.3	7.5	0.0	2.5	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_3	PF07726.11	gi|410671947|ref|YP_006924318.1|	-	0.0085	15.9	0.1	0.61	9.9	0.0	3.2	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF87	PF01935.17	gi|410671947|ref|YP_006924318.1|	-	0.0096	16.0	10.5	0.44	10.6	0.0	4.7	5	0	0	5	5	5	1	Helicase	HerA,	central	domain
Mg_chelatase	PF01078.21	gi|410671947|ref|YP_006924318.1|	-	0.01	15.2	0.6	7.9	5.8	0.0	3.4	3	1	0	3	3	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_24	PF13479.6	gi|410671947|ref|YP_006924318.1|	-	0.01	15.6	0.0	3.2	7.4	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
Ras	PF00071.22	gi|410671947|ref|YP_006924318.1|	-	0.011	15.3	0.1	5.1	6.7	0.0	3.1	3	0	0	3	3	2	0	Ras	family
NTPase_1	PF03266.15	gi|410671947|ref|YP_006924318.1|	-	0.013	15.5	0.1	8.9	6.2	0.0	3.0	3	0	0	3	3	2	0	NTPase
SRP54	PF00448.22	gi|410671947|ref|YP_006924318.1|	-	0.023	14.3	0.0	6.4	6.3	0.0	2.4	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_6	PF12774.7	gi|410671947|ref|YP_006924318.1|	-	0.032	13.2	0.0	0.62	9.0	0.0	2.3	2	0	0	2	2	2	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
PhoH	PF02562.16	gi|410671947|ref|YP_006924318.1|	-	0.04	13.4	0.0	8.2	5.8	0.0	2.6	2	0	0	2	2	2	0	PhoH-like	protein
PduV-EutP	PF10662.9	gi|410671947|ref|YP_006924318.1|	-	0.086	12.6	0.0	3.3	7.4	0.0	2.6	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
ATP_bind_1	PF03029.17	gi|410671947|ref|YP_006924318.1|	-	0.13	12.0	0.0	21	4.8	0.0	2.6	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_15	PF13175.6	gi|410671947|ref|YP_006924318.1|	-	0.25	11.0	5.6	28	4.3	0.0	3.3	2	1	0	2	2	2	0	AAA	ATPase	domain
DUF1359	PF07097.11	gi|410671947|ref|YP_006924318.1|	-	0.26	11.6	0.1	0.26	11.6	0.1	2.9	4	0	0	4	4	1	0	Protein	of	unknown	function	(DUF1359)
DUF4407	PF14362.6	gi|410671947|ref|YP_006924318.1|	-	6.8	5.9	10.2	3.4	6.9	6.9	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
Cep57_CLD_2	PF14197.6	gi|410671947|ref|YP_006924318.1|	-	7.1	6.8	14.2	11	6.2	8.2	3.9	2	1	1	3	3	2	0	Centrosome	localisation	domain	of	PPC89
Lysine_decarbox	PF03641.14	gi|410671948|ref|YP_006924319.1|	-	0.064	13.3	0.0	14	5.8	0.0	3.0	2	0	0	2	2	2	0	Possible	lysine	decarboxylase
ECH_2	PF16113.5	gi|410671948|ref|YP_006924319.1|	-	0.11	11.9	3.1	0.8	9.1	0.2	2.5	2	1	0	2	2	2	0	Enoyl-CoA	hydratase/isomerase
Baculo_PEP_C	PF04513.12	gi|410671948|ref|YP_006924319.1|	-	1.6	8.8	24.7	0.079	13.0	6.5	4.9	3	2	2	5	5	5	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF948	PF06103.11	gi|410671948|ref|YP_006924319.1|	-	1.8	8.9	12.9	11	6.4	4.0	4.9	3	1	0	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF169	PF02596.15	gi|410671949|ref|YP_006924320.1|	-	4.1e-63	213.0	0.0	4.6e-63	212.9	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	ArCR,	COG2043
cobW	PF02492.19	gi|410671951|ref|YP_006924322.1|	-	1.1e-39	135.9	0.9	1.7e-39	135.2	0.9	1.3	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
CbiA	PF01656.23	gi|410671951|ref|YP_006924322.1|	-	0.00011	22.3	1.2	0.0011	19.0	1.4	2.6	2	2	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MeaB	PF03308.16	gi|410671951|ref|YP_006924322.1|	-	0.0026	16.8	3.3	0.01	14.9	0.6	2.2	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_31	PF13614.6	gi|410671951|ref|YP_006924322.1|	-	0.019	14.9	0.6	0.041	13.8	0.6	1.6	1	1	0	1	1	1	0	AAA	domain
MobB	PF03205.14	gi|410671951|ref|YP_006924322.1|	-	0.063	13.2	2.2	0.21	11.5	0.1	2.5	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SRP54	PF00448.22	gi|410671951|ref|YP_006924322.1|	-	0.077	12.6	0.6	0.16	11.6	0.2	1.7	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
Zeta_toxin	PF06414.12	gi|410671951|ref|YP_006924322.1|	-	0.12	11.6	0.2	0.24	10.6	0.2	1.5	1	0	0	1	1	1	0	Zeta	toxin
Glyco_trans_4_2	PF13477.6	gi|410671951|ref|YP_006924322.1|	-	0.13	12.2	0.0	0.33	11.0	0.0	1.6	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
ATP_bind_1	PF03029.17	gi|410671951|ref|YP_006924322.1|	-	0.51	10.1	5.9	2.1	8.1	0.4	2.5	3	0	0	3	3	3	0	Conserved	hypothetical	ATP	binding	protein
SelP_N	PF04592.14	gi|410671951|ref|YP_006924322.1|	-	7	6.0	13.5	12	5.2	13.5	1.3	1	0	0	1	1	1	0	Selenoprotein	P,	N	terminal	region
DUF5372	PF17342.2	gi|410671952|ref|YP_006924323.1|	-	0.13	12.7	0.1	0.14	12.6	0.1	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5372)
CbiX	PF01903.17	gi|410671953|ref|YP_006924324.1|	-	2.9e-32	111.2	0.0	3.3e-32	111.0	0.0	1.0	1	0	0	1	1	1	1	CbiX
CbiK	PF06180.11	gi|410671953|ref|YP_006924324.1|	-	1.9e-07	30.7	0.0	2e-07	30.6	0.0	1.0	1	0	0	1	1	1	1	Cobalt	chelatase	(CbiK)
Ferrochelatase	PF00762.19	gi|410671953|ref|YP_006924324.1|	-	0.08	12.0	0.0	0.091	11.8	0.0	1.1	1	0	0	1	1	1	0	Ferrochelatase
FdhD-NarQ	PF02634.15	gi|410671954|ref|YP_006924325.1|	-	4.6e-60	203.3	0.3	5.4e-60	203.0	0.3	1.0	1	0	0	1	1	1	1	FdhD/NarQ	family
Molybdopterin	PF00384.22	gi|410671955|ref|YP_006924326.1|	-	3.4e-20	72.4	0.0	6.6e-20	71.5	0.0	1.5	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase
TPP_enzyme_M	PF00205.22	gi|410671955|ref|YP_006924326.1|	-	0.00068	19.4	0.1	0.32	10.7	0.0	3.0	2	1	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	central	domain
CO_dh	PF02552.16	gi|410671955|ref|YP_006924326.1|	-	0.037	13.8	0.1	0.17	11.6	0.0	2.0	2	0	0	2	2	2	0	CO	dehydrogenase	beta	subunit/acetyl-CoA	synthase	epsilon	subunit
Molydop_binding	PF01568.21	gi|410671956|ref|YP_006924327.1|	-	1.2e-09	38.2	0.0	1.4e-09	38.0	0.0	1.1	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
MDH	PF02315.16	gi|410671956|ref|YP_006924327.1|	-	0.031	14.3	0.1	0.045	13.8	0.1	1.2	1	0	0	1	1	1	0	Methanol	dehydrogenase	beta	subunit
ADH_N	PF08240.12	gi|410671956|ref|YP_006924327.1|	-	0.057	13.3	0.4	0.096	12.6	0.4	1.4	1	0	0	1	1	1	0	Alcohol	dehydrogenase	GroES-like	domain
GXGXG	PF01493.19	gi|410671957|ref|YP_006924328.1|	-	3.7e-12	46.2	21.9	7.9e-12	45.2	21.9	1.5	1	1	0	1	1	1	1	GXGXG	motif
Amidohydro_3	PF07969.11	gi|410671958|ref|YP_006924329.1|	-	1.6e-88	298.2	0.0	2e-88	298.0	0.0	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|410671958|ref|YP_006924329.1|	-	2.4e-06	27.1	0.2	0.0031	16.9	0.0	2.5	3	0	0	3	3	3	2	Amidohydrolase	family
Fer4	PF00037.27	gi|410671959|ref|YP_006924330.1|	-	4.6e-46	152.9	83.2	7e-08	32.0	7.1	7.7	8	0	0	8	8	8	7	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|410671959|ref|YP_006924330.1|	-	2e-41	140.4	122.6	2.6e-11	43.9	9.3	4.8	1	1	5	6	6	6	6	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410671959|ref|YP_006924330.1|	-	3.4e-29	101.6	56.2	6.6e-10	39.8	5.5	6.3	5	1	1	6	6	6	6	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|410671959|ref|YP_006924330.1|	-	6.2e-27	93.5	54.6	1.7e-07	31.3	6.5	5.5	3	1	4	7	7	7	7	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410671959|ref|YP_006924330.1|	-	2.2e-26	90.8	82.9	1.6e-05	24.8	2.7	7.6	8	0	0	8	8	8	7	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|410671959|ref|YP_006924330.1|	-	4.6e-24	84.3	67.4	3.8e-07	30.1	9.5	6.8	2	2	5	7	7	7	7	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410671959|ref|YP_006924330.1|	-	2.8e-22	78.6	70.5	1.4e-06	28.3	20.3	5.5	2	2	4	6	6	6	6	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410671959|ref|YP_006924330.1|	-	5.9e-21	73.2	72.1	0.00052	19.9	2.8	7.5	7	0	0	7	7	7	7	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|410671959|ref|YP_006924330.1|	-	3.4e-16	59.4	57.3	1.2e-07	32.0	3.1	5.4	3	1	2	5	5	5	4	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410671959|ref|YP_006924330.1|	-	7e-14	52.1	54.2	8.5e-06	26.2	2.2	5.7	3	2	3	6	6	6	5	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410671959|ref|YP_006924330.1|	-	8.5e-10	38.4	76.8	0.011	16.2	2.2	7.6	8	0	0	8	8	7	5	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|410671959|ref|YP_006924330.1|	-	1.3e-08	35.2	101.2	0.0033	18.2	6.1	8.2	8	0	0	8	8	8	5	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|410671959|ref|YP_006924330.1|	-	0.00043	20.7	77.1	0.4	11.3	5.1	8.0	7	1	1	8	8	8	5	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_22	PF17179.4	gi|410671959|ref|YP_006924330.1|	-	0.001	19.8	66.6	0.23	12.3	2.9	7.1	3	2	3	7	7	7	5	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|410671959|ref|YP_006924330.1|	-	0.0049	17.0	62.8	0.21	11.8	1.6	7.0	3	2	3	6	6	6	3	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|410671959|ref|YP_006924330.1|	-	0.53	11.0	67.0	1.3	9.8	10.8	7.9	5	3	2	7	7	7	0	4Fe-4S	single	cluster	domain
DUF1638	PF07796.11	gi|410671960|ref|YP_006924331.1|	-	0.14	12.2	0.0	0.22	11.6	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1638)
Desulfoferrod_N	PF06397.12	gi|410671961|ref|YP_006924332.1|	-	0.073	12.7	11.6	0.44	10.2	11.6	2.1	1	1	0	1	1	1	0	Desulfoferrodoxin,	N-terminal	domain
GHMP_kinases_N	PF00288.26	gi|410671962|ref|YP_006924333.1|	-	4.6e-12	46.0	1.1	1.7e-11	44.2	1.2	1.9	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|410671962|ref|YP_006924333.1|	-	0.0004	20.7	0.2	0.0015	18.9	0.1	2.0	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
CM_2	PF01817.21	gi|410671963|ref|YP_006924334.1|	-	3.7e-13	49.6	5.8	4.2e-13	49.4	5.8	1.0	1	0	0	1	1	1	1	Chorismate	mutase	type	II
CENP-H	PF05837.12	gi|410671963|ref|YP_006924334.1|	-	0.0071	16.7	2.2	0.0088	16.4	2.2	1.1	1	0	0	1	1	1	1	Centromere	protein	H	(CENP-H)
AIRC	PF00731.20	gi|410671964|ref|YP_006924335.1|	-	4e-44	149.8	4.0	4.6e-44	149.6	4.0	1.0	1	0	0	1	1	1	1	AIR	carboxylase
Fe-ADH_2	PF13685.6	gi|410671964|ref|YP_006924335.1|	-	0.002	17.8	0.4	0.0024	17.6	0.4	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
MetOD1	PF18546.1	gi|410671965|ref|YP_006924336.1|	-	3.6e-49	166.7	0.2	4.8e-49	166.3	0.2	1.1	1	0	0	1	1	1	1	Metanogen	output	domain	1
Response_reg	PF00072.24	gi|410671965|ref|YP_006924336.1|	-	4.9e-24	84.7	0.1	8.8e-24	83.8	0.1	1.5	1	0	0	1	1	1	1	Response	regulator	receiver	domain
V4R	PF02830.18	gi|410671965|ref|YP_006924336.1|	-	0.022	14.8	0.0	0.043	13.8	0.0	1.5	1	0	0	1	1	1	0	V4R	domain
ATPase	PF06745.13	gi|410671966|ref|YP_006924337.1|	-	1.1e-44	152.6	0.8	1.1e-43	149.3	0.8	1.9	1	1	0	1	1	1	1	KaiC
DnaB_C	PF03796.15	gi|410671966|ref|YP_006924337.1|	-	1.1e-05	24.9	0.0	2.1e-05	24.0	0.0	1.6	1	1	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
GvpD	PF07088.11	gi|410671966|ref|YP_006924337.1|	-	1.4e-05	24.0	0.1	0.00019	20.2	0.1	2.3	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
RecA	PF00154.21	gi|410671966|ref|YP_006924337.1|	-	1.5e-05	24.6	0.0	2.6e-05	23.8	0.0	1.4	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
AAA_25	PF13481.6	gi|410671966|ref|YP_006924337.1|	-	0.00068	19.3	0.0	0.0013	18.4	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
DUF2075	PF09848.9	gi|410671966|ref|YP_006924337.1|	-	0.0019	17.5	0.1	0.0036	16.6	0.0	1.5	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
NTPase_1	PF03266.15	gi|410671966|ref|YP_006924337.1|	-	0.0045	16.9	0.4	1.3	8.9	0.1	2.2	2	0	0	2	2	2	2	NTPase
IstB_IS21	PF01695.17	gi|410671966|ref|YP_006924337.1|	-	0.0052	16.5	0.2	0.15	11.7	0.0	2.4	2	1	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_22	PF13401.6	gi|410671966|ref|YP_006924337.1|	-	0.011	16.0	0.2	0.22	11.8	0.2	2.2	1	1	0	1	1	1	0	AAA	domain
MEDS	PF14417.6	gi|410671966|ref|YP_006924337.1|	-	0.015	15.1	0.0	0.028	14.3	0.0	1.3	1	0	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
AAA_24	PF13479.6	gi|410671966|ref|YP_006924337.1|	-	0.026	14.3	0.2	0.078	12.7	0.1	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|410671966|ref|YP_006924337.1|	-	0.086	12.9	0.1	1.3	9.1	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|410671966|ref|YP_006924337.1|	-	0.088	13.2	0.0	0.14	12.6	0.0	1.3	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|410671966|ref|YP_006924337.1|	-	0.091	12.5	0.0	1.6	8.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
ResIII	PF04851.15	gi|410671966|ref|YP_006924337.1|	-	0.092	12.7	0.0	0.17	11.9	0.0	1.4	1	1	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
Viral_helicase1	PF01443.18	gi|410671966|ref|YP_006924337.1|	-	0.21	11.3	0.1	0.65	9.7	0.0	1.9	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
POR_N	PF01855.19	gi|410671967|ref|YP_006924338.1|	-	2.8e-59	200.7	0.0	5e-59	199.8	0.0	1.4	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.18	gi|410671967|ref|YP_006924338.1|	-	1e-31	110.4	0.0	2.2e-31	109.3	0.0	1.6	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_N	PF02776.18	gi|410671967|ref|YP_006924338.1|	-	1.6e-07	31.1	0.9	2.9e-07	30.3	0.9	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
PFOR_II	PF17147.4	gi|410671967|ref|YP_006924338.1|	-	1.3e-06	28.7	0.0	3.8e-06	27.1	0.0	1.9	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|410671967|ref|YP_006924338.1|	-	2.4e-06	27.4	0.0	5.4e-06	26.3	0.0	1.6	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_C	PF02775.21	gi|410671968|ref|YP_006924339.1|	-	1.3e-26	93.2	0.0	2.1e-26	92.6	0.0	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.8	gi|410671968|ref|YP_006924339.1|	-	9.4e-26	89.7	0.1	1.5e-25	89.1	0.1	1.4	1	0	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
Exonuc_VII_S	PF02609.16	gi|410671968|ref|YP_006924339.1|	-	0.16	12.1	0.0	0.35	11.0	0.0	1.5	1	0	0	1	1	1	0	Exonuclease	VII	small	subunit
MTS	PF05175.14	gi|410671969|ref|YP_006924340.1|	-	1.6e-09	37.6	0.0	1.4e-07	31.2	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_23	PF13489.6	gi|410671969|ref|YP_006924340.1|	-	2.6e-07	30.6	0.0	2.9e-06	27.2	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|410671969|ref|YP_006924340.1|	-	6.5e-07	29.3	0.0	8.8e-07	28.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|410671969|ref|YP_006924340.1|	-	1.6e-06	27.8	0.0	4.2e-06	26.5	0.0	1.6	2	0	0	2	2	2	1	Methionine	biosynthesis	protein	MetW
Methyltransf_25	PF13649.6	gi|410671969|ref|YP_006924340.1|	-	3.9e-06	27.5	0.0	6.8e-05	23.5	0.0	2.5	3	0	0	3	3	3	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410671969|ref|YP_006924340.1|	-	0.00081	20.0	0.0	0.008	16.8	0.0	2.5	2	1	0	2	2	2	1	Methyltransferase	domain
UPF0146	PF03686.13	gi|410671969|ref|YP_006924340.1|	-	0.0016	18.3	0.1	0.0028	17.5	0.1	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0146)
Methyltransf_24	PF13578.6	gi|410671969|ref|YP_006924340.1|	-	0.0018	19.3	0.0	0.011	16.7	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|410671969|ref|YP_006924340.1|	-	0.0024	18.6	0.0	0.016	15.9	0.0	2.2	2	1	0	2	2	2	1	Methyltransferase	domain
PCMT	PF01135.19	gi|410671969|ref|YP_006924340.1|	-	0.0065	16.2	0.0	0.013	15.2	0.0	1.6	2	0	0	2	2	2	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
RrnaAD	PF00398.20	gi|410671969|ref|YP_006924340.1|	-	0.017	14.2	0.0	0.032	13.3	0.0	1.4	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_18	PF12847.7	gi|410671969|ref|YP_006924340.1|	-	0.017	15.0	0.0	0.28	11.1	0.0	2.1	2	0	0	2	2	2	0	Methyltransferase	domain
UPF0020	PF01170.18	gi|410671969|ref|YP_006924340.1|	-	0.12	12.0	0.0	0.23	11.1	0.0	1.5	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_16	PF10294.9	gi|410671969|ref|YP_006924340.1|	-	0.13	12.0	0.0	0.19	11.5	0.0	1.2	1	0	0	1	1	1	0	Lysine	methyltransferase
PrmA	PF06325.13	gi|410671969|ref|YP_006924340.1|	-	0.15	11.5	0.2	0.25	10.7	0.2	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
RrnaAD	PF00398.20	gi|410671970|ref|YP_006924341.1|	-	1.7e-55	187.9	0.0	2.2e-55	187.6	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_25	PF13649.6	gi|410671970|ref|YP_006924341.1|	-	1.5e-07	32.0	0.0	3.3e-07	30.9	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410671970|ref|YP_006924341.1|	-	2.5e-05	24.8	0.0	5.6e-05	23.7	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|410671970|ref|YP_006924341.1|	-	0.0045	16.8	0.0	0.009	15.8	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|410671970|ref|YP_006924341.1|	-	0.0068	16.2	0.0	0.012	15.4	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
CMAS	PF02353.20	gi|410671970|ref|YP_006924341.1|	-	0.018	14.4	0.0	0.03	13.6	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
MTS	PF05175.14	gi|410671970|ref|YP_006924341.1|	-	0.019	14.5	0.0	0.033	13.8	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_PK	PF05891.12	gi|410671970|ref|YP_006924341.1|	-	0.049	13.2	0.0	0.077	12.5	0.0	1.3	1	0	0	1	1	1	0	AdoMet	dependent	proline	di-methyltransferase
Methyltransf_23	PF13489.6	gi|410671970|ref|YP_006924341.1|	-	0.16	11.8	0.0	0.28	11.0	0.0	1.4	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_32	PF13679.6	gi|410671970|ref|YP_006924341.1|	-	0.21	11.5	0.0	0.37	10.8	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
DUF655	PF04919.12	gi|410671971|ref|YP_006924342.1|	-	2.3e-65	220.0	0.1	2.6e-65	219.8	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_6	PF14579.6	gi|410671971|ref|YP_006924342.1|	-	0.00034	20.8	0.0	0.00056	20.1	0.0	1.3	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_3	PF12836.7	gi|410671971|ref|YP_006924342.1|	-	0.00054	20.2	0.1	0.0015	18.8	0.0	1.8	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|410671971|ref|YP_006924342.1|	-	0.069	13.8	0.2	2	9.1	0.1	2.4	2	1	0	2	2	2	0	Helix-hairpin-helix	domain
RNA_pol_Rpb4	PF03874.16	gi|410671972|ref|YP_006924343.1|	-	3.3e-11	43.6	1.2	5.2e-11	43.0	1.2	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb4
Lzipper-MIP1	PF14389.6	gi|410671972|ref|YP_006924343.1|	-	0.0055	17.0	1.0	0.0097	16.2	1.0	1.5	1	0	0	1	1	1	1	Leucine-zipper	of	ternary	complex	factor	MIP1
DUF1515	PF07439.11	gi|410671972|ref|YP_006924343.1|	-	0.051	13.6	0.1	0.072	13.1	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1515)
Ribosomal_L21e	PF01157.18	gi|410671973|ref|YP_006924344.1|	-	5.3e-35	119.3	0.1	5.7e-35	119.2	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L21e
THUMP	PF02926.17	gi|410671974|ref|YP_006924345.1|	-	1.7e-10	41.1	0.1	1.2e-09	38.5	0.0	2.1	2	0	0	2	2	2	1	THUMP	domain
FYVE	PF01363.21	gi|410671974|ref|YP_006924345.1|	-	0.014	15.6	0.1	0.065	13.4	0.0	2.0	2	0	0	2	2	2	0	FYVE	zinc	finger
ATP-cone	PF03477.16	gi|410671974|ref|YP_006924345.1|	-	0.11	13.1	0.4	6	7.5	0.1	2.5	2	0	0	2	2	2	0	ATP	cone	domain
Methyltrn_RNA_2	PF04013.12	gi|410671975|ref|YP_006924346.1|	-	1.8e-64	217.1	0.0	2e-64	217.0	0.0	1.0	1	0	0	1	1	1	1	Putative	SAM-dependent	RNA	methyltransferase
SAMP	PF05924.11	gi|410671975|ref|YP_006924346.1|	-	0.28	10.5	1.2	0.63	9.4	1.2	1.6	1	0	0	1	1	1	0	SAMP	Motif
DEAD	PF00270.29	gi|410671976|ref|YP_006924347.1|	-	2.5e-50	170.7	0.9	2.5e-50	170.7	0.9	1.6	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|410671976|ref|YP_006924347.1|	-	5.1e-30	104.1	0.6	1.1e-27	96.6	0.4	2.8	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|410671976|ref|YP_006924347.1|	-	1.8e-05	24.8	0.0	3.7e-05	23.8	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_RecD	PF05127.14	gi|410671976|ref|YP_006924347.1|	-	0.0086	15.9	0.0	0.018	14.9	0.0	1.5	1	0	0	1	1	1	1	Helicase
CMS1	PF14617.6	gi|410671976|ref|YP_006924347.1|	-	0.015	14.7	0.0	0.034	13.5	0.0	1.6	1	0	0	1	1	1	0	U3-containing	90S	pre-ribosomal	complex	subunit
PyrI	PF01948.18	gi|410671976|ref|YP_006924347.1|	-	0.097	12.9	2.7	1.6	9.1	0.3	3.7	3	1	0	3	3	3	0	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
Phos_pyr_kin	PF08543.12	gi|410671977|ref|YP_006924348.1|	-	4.5e-79	265.3	6.1	6.1e-79	264.9	6.1	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
ThiP_synth	PF10120.9	gi|410671977|ref|YP_006924348.1|	-	5e-63	211.6	1.0	1.1e-62	210.5	0.3	1.9	2	0	0	2	2	2	1	Thiamine-phosphate	synthase
PfkB	PF00294.24	gi|410671977|ref|YP_006924348.1|	-	8.3e-12	45.0	0.8	1.3e-11	44.4	0.8	1.2	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Big_4	PF07532.11	gi|410671977|ref|YP_006924348.1|	-	0.11	12.2	0.0	0.26	11.0	0.0	1.6	1	0	0	1	1	1	0	Bacterial	Ig-like	domain	(group	4)
LSM	PF01423.22	gi|410671979|ref|YP_006924350.1|	-	1.4e-23	82.4	0.2	1.5e-23	82.3	0.2	1.0	1	0	0	1	1	1	1	LSM	domain
GATase_7	PF13537.6	gi|410671980|ref|YP_006924351.1|	-	8.4e-24	83.8	0.0	3.2e-23	82.0	0.0	1.9	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.6	gi|410671980|ref|YP_006924351.1|	-	7.8e-23	81.1	0.0	1e-21	77.6	0.0	2.6	3	0	0	3	3	3	1	Glutamine	amidotransferase	domain
GATase_4	PF13230.6	gi|410671980|ref|YP_006924351.1|	-	9.8e-11	41.1	0.0	1.1e-08	34.3	0.0	2.1	2	0	0	2	2	2	2	Glutamine	amidotransferases	class-II
Pribosyltran	PF00156.27	gi|410671980|ref|YP_006924351.1|	-	6.3e-06	25.8	0.1	1.2e-05	24.9	0.1	1.4	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
PAS_3	PF08447.12	gi|410671981|ref|YP_006924352.1|	-	5.5e-23	81.1	0.0	2.6e-20	72.5	0.0	2.8	2	0	0	2	2	2	1	PAS	fold
HATPase_c	PF02518.26	gi|410671981|ref|YP_006924352.1|	-	7.8e-21	74.7	0.1	2.8e-19	69.7	0.1	2.7	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|410671981|ref|YP_006924352.1|	-	6.1e-12	45.7	0.8	1e-07	32.2	0.9	3.8	3	0	0	3	3	3	2	PAS	domain
PAS	PF00989.25	gi|410671981|ref|YP_006924352.1|	-	1.1e-09	38.2	0.4	7.5e-05	22.7	0.1	4.1	3	1	0	3	3	3	2	PAS	fold
PAS_8	PF13188.7	gi|410671981|ref|YP_006924352.1|	-	3e-09	36.7	0.1	8.6e-06	25.6	0.0	2.8	2	0	0	2	2	2	2	PAS	domain
PAS_4	PF08448.10	gi|410671981|ref|YP_006924352.1|	-	1.4e-05	25.3	0.0	0.041	14.1	0.0	2.5	2	0	0	2	2	2	2	PAS	fold
HisKA	PF00512.25	gi|410671981|ref|YP_006924352.1|	-	0.00031	20.7	0.3	0.00095	19.2	0.0	2.0	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_3	PF13492.6	gi|410671981|ref|YP_006924352.1|	-	0.002	18.5	0.0	0.0052	17.1	0.0	1.7	1	1	0	1	1	1	1	GAF	domain
PAS_12	PF18095.1	gi|410671981|ref|YP_006924352.1|	-	0.02	14.5	0.6	0.081	12.6	0.1	2.2	2	0	0	2	2	2	0	UPF0242	C-terminal	PAS-like	domain
Rootletin	PF15035.6	gi|410671981|ref|YP_006924352.1|	-	0.067	13.2	2.5	0.076	13.0	0.4	2.0	2	0	0	2	2	2	0	Ciliary	rootlet	component,	centrosome	cohesion
HATPase_c_3	PF13589.6	gi|410671981|ref|YP_006924352.1|	-	0.51	10.2	0.0	0.51	10.2	0.0	2.3	3	0	0	3	3	3	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF1664	PF07889.12	gi|410671981|ref|YP_006924352.1|	-	3.2	7.8	5.2	8.7	6.4	0.2	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Phage_integrase	PF00589.22	gi|410671983|ref|YP_006924354.1|	-	2.4e-15	56.7	0.6	4.8e-15	55.8	0.1	1.7	2	0	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.6	gi|410671983|ref|YP_006924354.1|	-	0.001	19.5	8.2	0.0021	18.5	3.0	3.2	2	2	1	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
DZR	PF12773.7	gi|410671983|ref|YP_006924354.1|	-	0.0084	16.1	1.3	0.0097	15.9	0.2	1.6	2	0	0	2	2	2	1	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|410671983|ref|YP_006924354.1|	-	0.0087	16.8	0.2	0.022	15.5	0.2	1.7	1	0	0	1	1	1	1	zinc-ribbon	family
CagZ	PF09053.10	gi|410671983|ref|YP_006924354.1|	-	0.048	13.3	0.1	0.14	11.8	0.1	1.7	1	0	0	1	1	1	0	CagZ
DegQ	PF08181.11	gi|410671983|ref|YP_006924354.1|	-	0.078	13.1	1.8	1.4	9.0	0.2	3.3	3	0	0	3	3	3	0	DegQ	(SacQ)	family
Mnd1	PF03962.15	gi|410671983|ref|YP_006924354.1|	-	0.1	12.9	2.3	0.4	11.0	0.2	3.1	3	1	0	3	3	3	0	Mnd1	HTH	domain
FixO	PF02433.15	gi|410671983|ref|YP_006924354.1|	-	0.18	11.2	1.5	0.37	10.2	0.4	2.0	2	0	0	2	2	2	0	Cytochrome	C	oxidase,	mono-heme	subunit/FixO
DUF3987	PF13148.6	gi|410671986|ref|YP_006924357.1|	-	5.8e-24	84.8	0.1	6.4e-20	71.5	0.0	2.8	2	1	1	3	3	3	2	Protein	of	unknown	function	(DUF3987)
D5_N	PF08706.11	gi|410671986|ref|YP_006924357.1|	-	0.055	13.7	0.0	0.12	12.6	0.0	1.5	1	0	0	1	1	1	0	D5	N	terminal	like
UDG	PF03167.19	gi|410671987|ref|YP_006924358.1|	-	1.2e-12	48.1	0.0	2e-12	47.4	0.0	1.3	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
DUF4357	PF14267.6	gi|410671988|ref|YP_006924359.1|	-	9e-22	76.8	0.1	1.8e-21	75.8	0.1	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4357)
RAMA	PF18755.1	gi|410671988|ref|YP_006924359.1|	-	0.00011	22.6	0.0	0.00017	22.0	0.0	1.4	1	0	0	1	1	1	1	Restriction	Enzyme	Adenine	Methylase	Associated
GIY-YIG	PF01541.24	gi|410671988|ref|YP_006924359.1|	-	0.00076	19.7	0.1	0.0016	18.6	0.1	1.6	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
TFIIS_C	PF01096.18	gi|410671989|ref|YP_006924360.1|	-	0.016	15.1	7.9	0.076	12.9	3.2	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_4	PF13717.6	gi|410671989|ref|YP_006924360.1|	-	0.53	10.3	7.8	3.7	7.5	1.5	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-Dof	PF02701.15	gi|410671989|ref|YP_006924360.1|	-	0.65	10.2	6.0	4	7.7	6.0	1.9	1	1	0	1	1	1	0	Dof	domain,	zinc	finger
TrmB	PF01978.19	gi|410671991|ref|YP_006924362.1|	-	0.0038	17.1	0.2	0.0061	16.4	0.2	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_34	PF13601.6	gi|410671991|ref|YP_006924362.1|	-	0.11	12.7	0.0	0.17	12.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF5343	PF17278.2	gi|410671993|ref|YP_006924364.1|	-	0.04	14.0	0.0	0.078	13.1	0.0	1.5	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5343)
Citrus_P18	PF05520.11	gi|410671993|ref|YP_006924364.1|	-	0.11	12.2	0.0	0.26	11.0	0.0	1.6	1	0	0	1	1	1	0	Citrus	tristeza	virus	P18	protein
N6_Mtase	PF02384.16	gi|410671994|ref|YP_006924365.1|	-	3.9e-53	180.8	0.1	6.6e-53	180.0	0.1	1.3	1	0	0	1	1	1	1	N-6	DNA	Methylase
HsdM_N	PF12161.8	gi|410671994|ref|YP_006924365.1|	-	5.5e-12	46.5	0.8	5.5e-12	46.5	0.8	2.3	2	0	0	2	2	2	1	HsdM	N-terminal	domain
AAA_22	PF13401.6	gi|410671994|ref|YP_006924365.1|	-	0.0017	18.7	0.0	0.14	12.4	0.0	3.0	2	1	1	3	3	3	1	AAA	domain
UPF0020	PF01170.18	gi|410671994|ref|YP_006924365.1|	-	0.0027	17.4	0.0	0.0056	16.4	0.0	1.4	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
MTS	PF05175.14	gi|410671994|ref|YP_006924365.1|	-	0.0054	16.3	0.0	0.019	14.5	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	small	domain
DUF416	PF04222.12	gi|410671994|ref|YP_006924365.1|	-	0.077	12.4	1.8	0.32	10.4	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF416)
AviRa	PF11599.8	gi|410671994|ref|YP_006924365.1|	-	0.08	12.4	0.0	0.24	10.8	0.0	1.8	2	0	0	2	2	2	0	RRNA	methyltransferase	AviRa
Methylase_S	PF01420.19	gi|410671995|ref|YP_006924366.1|	-	5.4e-31	108.1	2.4	6.4e-31	107.8	2.4	1.1	1	0	0	1	1	1	1	Type	I	restriction	modification	DNA	specificity	domain
ResIII	PF04851.15	gi|410671996|ref|YP_006924367.1|	-	5e-31	108.0	0.0	9.4e-31	107.1	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
SWI2_SNF2	PF18766.1	gi|410671996|ref|YP_006924367.1|	-	6.3e-13	48.9	0.0	1.6e-12	47.6	0.0	1.7	1	0	0	1	1	1	1	SWI2/SNF2	ATPase
EcoEI_R_C	PF08463.10	gi|410671996|ref|YP_006924367.1|	-	1e-10	42.0	0.3	1.7e-09	38.0	0.0	2.3	2	0	0	2	2	2	1	EcoEI	R	protein	C-terminal
Helicase_C	PF00271.31	gi|410671996|ref|YP_006924367.1|	-	1.4e-07	31.8	0.0	3.8e-07	30.4	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
HSDR_N	PF04313.14	gi|410671996|ref|YP_006924367.1|	-	2e-06	27.9	0.8	0.0051	16.8	0.1	3.2	2	1	1	3	3	3	2	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
HSDR_N_2	PF13588.6	gi|410671996|ref|YP_006924367.1|	-	2.4e-06	27.5	0.0	4.4e-06	26.6	0.0	1.5	1	0	0	1	1	1	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
DEAD	PF00270.29	gi|410671996|ref|YP_006924367.1|	-	0.00033	20.5	0.0	0.00099	18.9	0.0	1.8	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
AAA_16	PF13191.6	gi|410671996|ref|YP_006924367.1|	-	0.038	14.4	0.0	0.083	13.3	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
N6_Mtase	PF02384.16	gi|410671997|ref|YP_006924368.1|	-	3.4e-29	102.1	0.0	6.4e-28	97.9	0.0	2.4	1	1	0	1	1	1	1	N-6	DNA	Methylase
Methyltransf_31	PF13847.6	gi|410671997|ref|YP_006924368.1|	-	0.0026	17.6	0.0	0.0063	16.3	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.18	gi|410671997|ref|YP_006924368.1|	-	0.022	14.5	0.9	0.092	12.4	0.1	2.3	2	1	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
AAA	PF00004.29	gi|410672000|ref|YP_006924371.1|	-	3.2e-39	134.4	0.3	1.3e-38	132.4	0.0	1.9	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|410672000|ref|YP_006924371.1|	-	2e-11	43.5	0.2	3.9e-11	42.6	0.2	1.5	1	0	0	1	1	1	1	AAA+	lid	domain
AAA_2	PF07724.14	gi|410672000|ref|YP_006924371.1|	-	1.4e-07	31.8	0.1	7.2e-07	29.5	0.0	2.0	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
TIP49	PF06068.13	gi|410672000|ref|YP_006924371.1|	-	1.4e-06	27.8	0.0	4.8e-06	26.0	0.0	1.7	1	1	1	2	2	2	1	TIP49	P-loop	domain
RuvB_N	PF05496.12	gi|410672000|ref|YP_006924371.1|	-	9.6e-05	22.2	0.0	0.00085	19.1	0.0	2.2	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|410672000|ref|YP_006924371.1|	-	0.00013	22.4	0.1	0.022	15.2	0.0	2.5	1	1	1	2	2	2	1	AAA	ATPase	domain
IstB_IS21	PF01695.17	gi|410672000|ref|YP_006924371.1|	-	0.00015	21.6	0.0	0.00023	20.9	0.0	1.3	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_22	PF13401.6	gi|410672000|ref|YP_006924371.1|	-	0.0002	21.7	2.4	0.0097	16.2	0.0	3.0	2	1	0	3	3	3	1	AAA	domain
AAA_5	PF07728.14	gi|410672000|ref|YP_006924371.1|	-	0.0003	20.8	0.0	0.0022	18.0	0.0	2.4	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Bac_DnaA	PF00308.18	gi|410672000|ref|YP_006924371.1|	-	0.0018	18.1	0.0	0.0027	17.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	dnaA	protein
AAA_24	PF13479.6	gi|410672000|ref|YP_006924371.1|	-	0.0029	17.4	0.0	0.0076	16.0	0.0	1.7	2	0	0	2	2	1	1	AAA	domain
AAA_7	PF12775.7	gi|410672000|ref|YP_006924371.1|	-	0.0044	16.5	0.0	0.053	13.0	0.0	2.2	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_28	PF13521.6	gi|410672000|ref|YP_006924371.1|	-	0.005	17.1	0.0	0.014	15.6	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.13	gi|410672000|ref|YP_006924371.1|	-	0.0057	15.9	0.0	0.013	14.7	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
Sigma54_activat	PF00158.26	gi|410672000|ref|YP_006924371.1|	-	0.0057	16.4	0.0	0.013	15.2	0.0	1.7	1	1	0	1	1	1	1	Sigma-54	interaction	domain
TsaE	PF02367.17	gi|410672000|ref|YP_006924371.1|	-	0.0081	16.2	0.0	0.017	15.1	0.0	1.5	1	0	0	1	1	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Mg_chelatase	PF01078.21	gi|410672000|ref|YP_006924371.1|	-	0.009	15.4	0.0	0.017	14.5	0.0	1.4	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_33	PF13671.6	gi|410672000|ref|YP_006924371.1|	-	0.01	16.0	0.0	0.022	14.9	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|410672000|ref|YP_006924371.1|	-	0.01	16.2	0.0	0.025	15.0	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
NACHT	PF05729.12	gi|410672000|ref|YP_006924371.1|	-	0.017	15.0	0.0	0.042	13.8	0.0	1.7	2	0	0	2	2	1	0	NACHT	domain
Parvo_NS1	PF01057.17	gi|410672000|ref|YP_006924371.1|	-	0.037	13.1	0.1	0.067	12.3	0.1	1.3	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
AAA_18	PF13238.6	gi|410672000|ref|YP_006924371.1|	-	0.039	14.5	0.0	0.092	13.3	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
TniB	PF05621.11	gi|410672000|ref|YP_006924371.1|	-	0.047	13.1	0.0	0.39	10.1	0.0	2.2	2	0	0	2	2	2	0	Bacterial	TniB	protein
AAA_25	PF13481.6	gi|410672000|ref|YP_006924371.1|	-	0.063	12.9	0.8	2	8.0	0.0	2.6	3	0	0	3	3	3	0	AAA	domain
ATPase	PF06745.13	gi|410672000|ref|YP_006924371.1|	-	0.07	12.5	0.2	1.7	7.9	0.0	2.4	3	0	0	3	3	3	0	KaiC
IPT	PF01745.16	gi|410672000|ref|YP_006924371.1|	-	0.082	12.3	0.0	0.17	11.3	0.0	1.5	1	0	0	1	1	1	0	Isopentenyl	transferase
ATPase_2	PF01637.18	gi|410672000|ref|YP_006924371.1|	-	0.13	12.2	0.3	0.89	9.4	0.1	2.3	2	1	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
PPV_E1_C	PF00519.17	gi|410672000|ref|YP_006924371.1|	-	0.22	10.3	0.0	0.32	9.8	0.0	1.1	1	0	0	1	1	1	0	Papillomavirus	helicase
Lactamase_B_2	PF12706.7	gi|410672002|ref|YP_006924373.1|	-	6e-24	84.7	0.0	2.6e-22	79.3	0.0	2.1	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|410672002|ref|YP_006924373.1|	-	3.2e-11	43.6	0.3	5.1e-10	39.7	0.0	2.5	1	1	1	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_4	PF13691.6	gi|410672002|ref|YP_006924373.1|	-	5e-05	22.9	0.0	9.5e-05	22.0	0.0	1.4	1	0	0	1	1	1	1	tRNase	Z	endonuclease
Nbs1_C	PF08599.10	gi|410672002|ref|YP_006924373.1|	-	0.054	13.7	0.0	0.1	12.7	0.0	1.4	1	0	0	1	1	1	0	DNA	damage	repair	protein	Nbs1
Ribosomal_S8e	PF01201.22	gi|410672003|ref|YP_006924374.1|	-	3.9e-31	108.1	7.6	4.4e-31	107.9	7.6	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S8e
AsnC_trans_reg	PF01037.21	gi|410672004|ref|YP_006924375.1|	-	4e-14	52.3	0.1	6.9e-14	51.6	0.1	1.4	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|410672004|ref|YP_006924375.1|	-	3.3e-10	39.4	0.3	1.4e-09	37.3	0.4	2.0	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|410672004|ref|YP_006924375.1|	-	2.8e-09	36.6	0.5	6e-09	35.6	0.5	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.7	gi|410672004|ref|YP_006924375.1|	-	0.0011	19.0	0.1	0.0017	18.4	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|410672004|ref|YP_006924375.1|	-	0.0014	18.5	1.6	0.0022	17.8	0.7	1.7	2	0	0	2	2	2	1	TFIIE	alpha	subunit
HTH_Crp_2	PF13545.6	gi|410672004|ref|YP_006924375.1|	-	0.0026	17.7	0.2	0.01	15.8	0.1	1.9	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|410672004|ref|YP_006924375.1|	-	0.0068	16.1	0.3	0.014	15.2	0.3	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
DprA_WH	PF17782.1	gi|410672004|ref|YP_006924375.1|	-	0.0077	16.3	0.0	0.015	15.4	0.0	1.5	1	0	0	1	1	1	1	DprA	winged	helix	domain
HTH_IclR	PF09339.10	gi|410672004|ref|YP_006924375.1|	-	0.034	13.9	0.0	0.062	13.1	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_9	PF08221.11	gi|410672004|ref|YP_006924375.1|	-	0.05	13.7	0.0	0.11	12.5	0.0	1.6	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_11	PF08279.12	gi|410672004|ref|YP_006924375.1|	-	0.058	13.4	0.4	0.11	12.5	0.1	1.6	2	0	0	2	2	2	0	HTH	domain
Sigma70_r4	PF04545.16	gi|410672004|ref|YP_006924375.1|	-	0.071	12.6	0.2	0.19	11.3	0.2	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
Replic_Relax	PF13814.6	gi|410672004|ref|YP_006924375.1|	-	0.086	12.9	0.0	0.19	11.8	0.0	1.6	2	0	0	2	2	2	0	Replication-relaxation
HTH_39	PF14090.6	gi|410672004|ref|YP_006924375.1|	-	0.09	12.5	0.0	0.18	11.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR	PF01047.22	gi|410672004|ref|YP_006924375.1|	-	0.09	12.7	0.1	0.17	11.9	0.1	1.4	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.20	gi|410672004|ref|YP_006924375.1|	-	0.11	12.8	0.1	0.32	11.4	0.1	1.7	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_12	PF08461.10	gi|410672004|ref|YP_006924375.1|	-	0.15	12.0	1.4	0.27	11.2	0.5	1.9	2	1	0	2	2	2	0	Ribonuclease	R	winged-helix	domain
Aminotran_1_2	PF00155.21	gi|410672005|ref|YP_006924376.1|	-	2.6e-68	230.8	0.0	2.9e-68	230.7	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|410672005|ref|YP_006924376.1|	-	1.4e-11	44.3	0.0	2.1e-11	43.8	0.0	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.19	gi|410672005|ref|YP_006924376.1|	-	1.8e-07	30.5	0.0	3e-07	29.8	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|410672005|ref|YP_006924376.1|	-	2.9e-06	26.1	0.0	4.4e-06	25.5	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.21	gi|410672005|ref|YP_006924376.1|	-	0.002	17.4	0.0	0.0038	16.6	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_3	PF00202.21	gi|410672005|ref|YP_006924376.1|	-	0.078	11.6	0.0	0.11	11.1	0.0	1.4	1	0	0	1	1	1	0	Aminotransferase	class-III
HATPase_c	PF02518.26	gi|410672006|ref|YP_006924377.1|	-	5.2e-32	110.7	0.1	1.3e-31	109.4	0.1	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|410672006|ref|YP_006924377.1|	-	1.9e-30	105.1	0.5	6.1e-17	61.8	0.0	3.6	3	0	0	3	3	3	3	PAS	domain
PAS	PF00989.25	gi|410672006|ref|YP_006924377.1|	-	1.7e-25	89.2	0.0	2.3e-14	53.4	0.0	3.7	3	0	0	3	3	3	3	PAS	fold
PAS_4	PF08448.10	gi|410672006|ref|YP_006924377.1|	-	9.3e-19	67.7	0.0	1.2e-08	35.1	0.0	3.7	3	0	0	3	3	3	3	PAS	fold
HisKA	PF00512.25	gi|410672006|ref|YP_006924377.1|	-	2e-17	63.0	0.1	5.4e-17	61.6	0.1	1.8	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.7	gi|410672006|ref|YP_006924377.1|	-	1.7e-15	56.6	0.0	2.7e-05	24.1	0.0	3.8	3	1	0	3	3	3	3	PAS	domain
PAS_3	PF08447.12	gi|410672006|ref|YP_006924377.1|	-	3.4e-11	43.3	0.0	6.9e-08	32.7	0.0	2.9	2	0	0	2	2	2	2	PAS	fold
HATPase_c_5	PF14501.6	gi|410672006|ref|YP_006924377.1|	-	1.4e-05	24.9	0.6	9.3e-05	22.3	0.0	2.8	4	0	0	4	4	4	1	GHKL	domain
HATPase_c_2	PF13581.6	gi|410672006|ref|YP_006924377.1|	-	0.0078	16.2	0.0	0.019	14.9	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|410672006|ref|YP_006924377.1|	-	0.019	14.8	0.0	0.047	13.5	0.0	1.7	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
SBP_bac_3	PF00497.20	gi|410672007|ref|YP_006924378.1|	-	5.4e-46	156.8	0.4	3.1e-24	85.7	0.1	2.1	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	3
sCache_2	PF17200.4	gi|410672007|ref|YP_006924378.1|	-	8.4e-09	35.5	0.1	2.2e-08	34.1	0.1	1.6	1	0	0	1	1	1	1	Single	Cache	domain	2
dCache_2	PF08269.11	gi|410672007|ref|YP_006924378.1|	-	9.3e-07	28.3	0.1	1.7e-06	27.4	0.1	1.4	1	0	0	1	1	1	1	Cache	domain
SPDY	PF03771.16	gi|410672007|ref|YP_006924378.1|	-	0.028	14.3	0.0	6.6	6.8	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF317)
SNARE_assoc	PF09335.11	gi|410672008|ref|YP_006924379.1|	-	3.7e-05	24.2	5.8	3.7e-05	24.2	5.8	2.1	1	1	1	2	2	2	1	SNARE	associated	Golgi	protein
LRV_FeS	PF05484.11	gi|410672008|ref|YP_006924379.1|	-	0.081	12.9	0.0	0.13	12.3	0.0	1.2	1	0	0	1	1	1	0	LRV	protein	FeS4	cluster
AI-2E_transport	PF01594.16	gi|410672009|ref|YP_006924380.1|	-	1.1e-38	133.2	45.7	1.4e-38	132.9	45.7	1.0	1	0	0	1	1	1	1	AI-2E	family	transporter
AI-2E_transport	PF01594.16	gi|410672010|ref|YP_006924381.1|	-	1.7e-45	155.6	49.4	2.1e-45	155.3	49.4	1.0	1	0	0	1	1	1	1	AI-2E	family	transporter
Pam17	PF08566.10	gi|410672010|ref|YP_006924381.1|	-	5.7	6.8	5.7	11	5.9	0.1	3.0	2	1	0	3	3	3	0	Mitochondrial	import	protein	Pam17
RDD	PF06271.12	gi|410672012|ref|YP_006924383.1|	-	8.6e-29	100.5	12.0	1e-28	100.3	12.0	1.1	1	0	0	1	1	1	1	RDD	family
zinc_ribbon_2	PF13240.6	gi|410672012|ref|YP_006924383.1|	-	0.00015	21.3	3.0	0.00022	20.8	3.0	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|410672012|ref|YP_006924383.1|	-	0.002	18.1	0.2	0.0028	17.6	0.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
Pex2_Pex12	PF04757.14	gi|410672012|ref|YP_006924383.1|	-	0.018	14.7	0.1	0.025	14.1	0.1	1.3	1	0	0	1	1	1	0	Pex2	/	Pex12	amino	terminal	region
zf-tcix	PF14952.6	gi|410672012|ref|YP_006924383.1|	-	0.029	14.0	2.4	0.094	12.3	2.2	1.9	1	1	1	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-RanBP	PF00641.18	gi|410672012|ref|YP_006924383.1|	-	0.031	13.6	2.4	0.062	12.6	0.5	2.1	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
zf-ribbon_3	PF13248.6	gi|410672012|ref|YP_006924383.1|	-	0.08	12.4	1.8	0.12	11.9	1.8	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
Viral_Beta_CD	PF04530.12	gi|410672012|ref|YP_006924383.1|	-	0.14	12.5	0.5	3	8.2	0.0	2.2	1	1	1	2	2	2	0	Viral	Beta	C/D	like	family
DUF35_N	PF12172.8	gi|410672012|ref|YP_006924383.1|	-	0.16	11.9	0.3	0.29	11.0	0.3	1.5	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
FtsX	PF02687.21	gi|410672012|ref|YP_006924383.1|	-	1.4	9.5	9.6	2.4	8.7	9.6	1.4	1	0	0	1	1	1	0	FtsX-like	permease	family
zf_UBZ	PF18439.1	gi|410672012|ref|YP_006924383.1|	-	1.7	8.3	4.6	9.4	5.9	0.0	3.0	2	1	1	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
DHHC	PF01529.20	gi|410672012|ref|YP_006924383.1|	-	2.8	8.1	11.9	5.4	7.1	1.2	2.6	1	1	1	2	2	2	0	DHHC	palmitoyltransferase
TrmB	PF01978.19	gi|410672013|ref|YP_006924384.1|	-	3.6e-18	65.2	0.2	5e-18	64.7	0.2	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|410672013|ref|YP_006924384.1|	-	6.5e-05	22.6	0.4	9.7e-05	22.1	0.4	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|410672013|ref|YP_006924384.1|	-	0.00014	21.7	0.1	0.00021	21.1	0.1	1.3	1	0	0	1	1	1	1	HTH	domain
TFIIE_alpha	PF02002.17	gi|410672013|ref|YP_006924384.1|	-	0.0002	21.2	0.0	0.00025	20.9	0.0	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
MarR_2	PF12802.7	gi|410672013|ref|YP_006924384.1|	-	0.00028	20.7	0.1	0.00042	20.1	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|410672013|ref|YP_006924384.1|	-	0.00029	20.8	0.1	0.00045	20.2	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|410672013|ref|YP_006924384.1|	-	0.00045	20.1	0.0	0.00065	19.6	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR	PF01047.22	gi|410672013|ref|YP_006924384.1|	-	0.0012	18.8	0.1	0.0018	18.1	0.1	1.3	1	0	0	1	1	1	1	MarR	family
Replic_Relax	PF13814.6	gi|410672013|ref|YP_006924384.1|	-	0.0015	18.6	0.0	0.0019	18.3	0.0	1.1	1	0	0	1	1	1	1	Replication-relaxation
HTH_5	PF01022.20	gi|410672013|ref|YP_006924384.1|	-	0.0053	16.6	0.0	0.0092	15.8	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.6	gi|410672013|ref|YP_006924384.1|	-	0.01	16.3	0.0	0.022	15.2	0.0	1.5	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
GntR	PF00392.21	gi|410672013|ref|YP_006924384.1|	-	0.016	14.9	0.1	0.027	14.1	0.1	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_24	PF13412.6	gi|410672013|ref|YP_006924384.1|	-	0.016	14.7	0.1	0.025	14.1	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_38	PF13936.6	gi|410672013|ref|YP_006924384.1|	-	0.066	13.0	0.0	0.14	11.9	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF5591	PF17884.1	gi|410672014|ref|YP_006924385.1|	-	1.9e-19	70.0	0.2	2.6e-19	69.6	0.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5591)
ATPase	PF06745.13	gi|410672015|ref|YP_006924386.1|	-	3.2e-49	167.4	2.6	3.7e-49	167.2	2.6	1.0	1	0	0	1	1	1	1	KaiC
GvpD	PF07088.11	gi|410672015|ref|YP_006924386.1|	-	3.8e-08	32.4	0.2	4.9e-08	32.0	0.2	1.0	1	0	0	1	1	1	1	GvpD	gas	vesicle	protein
Rad51	PF08423.11	gi|410672015|ref|YP_006924386.1|	-	9.3e-06	25.1	3.6	0.0013	18.1	3.6	2.7	1	1	0	1	1	1	1	Rad51
AAA_25	PF13481.6	gi|410672015|ref|YP_006924386.1|	-	0.00015	21.4	0.0	0.00021	20.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|410672015|ref|YP_006924386.1|	-	0.00015	22.2	2.2	0.00076	19.9	2.2	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DnaB_C	PF03796.15	gi|410672015|ref|YP_006924386.1|	-	0.00097	18.5	0.1	0.0025	17.2	0.0	1.6	2	1	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
MEDS	PF14417.6	gi|410672015|ref|YP_006924386.1|	-	0.005	16.7	0.0	0.0081	16.0	0.0	1.3	1	1	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
PAXNEB	PF05625.11	gi|410672015|ref|YP_006924386.1|	-	0.033	13.3	0.9	0.33	10.1	0.1	2.0	1	1	1	2	2	2	0	PAXNEB	protein
DUF2075	PF09848.9	gi|410672015|ref|YP_006924386.1|	-	0.062	12.5	0.0	0.08	12.2	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
DUF5449	PF17528.2	gi|410672015|ref|YP_006924386.1|	-	0.087	12.6	0.3	0.15	11.9	0.3	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5449)
AAA_24	PF13479.6	gi|410672015|ref|YP_006924386.1|	-	0.12	12.1	0.3	0.25	11.1	0.2	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|410672015|ref|YP_006924386.1|	-	0.14	12.4	0.2	0.31	11.3	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|410672015|ref|YP_006924386.1|	-	0.15	11.8	0.0	0.25	11.0	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
HMG-CoA_red	PF00368.18	gi|410672016|ref|YP_006924387.1|	-	3.7e-135	450.6	1.0	4.2e-135	450.5	1.0	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
Acyl_transf_2	PF02273.15	gi|410672016|ref|YP_006924387.1|	-	0.065	12.5	0.0	0.1	11.8	0.0	1.2	1	0	0	1	1	1	0	Acyl	transferase
SprT-like	PF10263.9	gi|410672017|ref|YP_006924388.1|	-	0.017	15.0	0.3	0.022	14.6	0.3	1.3	1	1	0	1	1	1	0	SprT-like	family
Aconitase	PF00330.20	gi|410672018|ref|YP_006924389.1|	-	3.4e-102	342.8	2.6	3.6e-100	336.2	2.6	2.2	1	1	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
DUF521	PF04412.13	gi|410672018|ref|YP_006924389.1|	-	0.086	11.5	0.0	0.14	10.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF521)
TrmB	PF01978.19	gi|410672019|ref|YP_006924390.1|	-	0.00088	19.1	0.1	0.0017	18.2	0.0	1.6	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
SMC_ScpB	PF04079.16	gi|410672019|ref|YP_006924390.1|	-	0.0058	16.3	0.1	0.0073	15.9	0.1	1.2	1	0	0	1	1	1	1	Segregation	and	condensation	complex	subunit	ScpB
HTH_34	PF13601.6	gi|410672019|ref|YP_006924390.1|	-	0.049	13.8	0.0	0.078	13.2	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|410672019|ref|YP_006924390.1|	-	0.086	12.7	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	MarR	family
PAS_4	PF08448.10	gi|410672020|ref|YP_006924391.1|	-	3e-61	204.5	0.0	2.2e-11	44.0	0.0	8.3	8	1	0	8	8	8	7	PAS	fold
PAS_9	PF13426.7	gi|410672020|ref|YP_006924391.1|	-	1.1e-56	189.4	0.2	5.2e-13	49.1	0.0	8.1	7	1	0	7	7	7	7	PAS	domain
PAS_3	PF08447.12	gi|410672020|ref|YP_006924391.1|	-	4.5e-53	177.5	0.1	6.5e-22	77.6	0.1	6.8	7	0	0	7	7	7	4	PAS	fold
PAS	PF00989.25	gi|410672020|ref|YP_006924391.1|	-	1e-51	173.7	0.0	6.2e-12	45.5	0.0	7.9	7	0	0	7	7	7	7	PAS	fold
Response_reg	PF00072.24	gi|410672020|ref|YP_006924391.1|	-	4.8e-45	152.3	1.2	2.6e-25	88.8	0.6	2.9	2	0	0	2	2	2	2	Response	regulator	receiver	domain
PAS_8	PF13188.7	gi|410672020|ref|YP_006924391.1|	-	2.1e-31	107.4	0.0	2.6e-06	27.3	0.0	7.8	7	0	0	7	7	7	6	PAS	domain
HATPase_c	PF02518.26	gi|410672020|ref|YP_006924391.1|	-	1.8e-30	105.7	0.2	4.6e-30	104.4	0.2	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_2	PF13185.6	gi|410672020|ref|YP_006924391.1|	-	3.3e-23	82.5	0.0	8.2e-23	81.2	0.0	1.7	1	0	0	1	1	1	1	GAF	domain
HisKA	PF00512.25	gi|410672020|ref|YP_006924391.1|	-	2.9e-21	75.3	1.1	2e-20	72.6	0.1	2.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_7	PF12860.7	gi|410672020|ref|YP_006924391.1|	-	1.3e-18	67.2	2.0	2.2e-09	37.5	0.0	5.8	5	0	0	5	5	5	3	PAS	fold
Hpt	PF01627.23	gi|410672020|ref|YP_006924391.1|	-	1.9e-09	37.6	0.0	8.2e-09	35.6	0.0	2.2	1	0	0	1	1	1	1	Hpt	domain
PAS_10	PF13596.6	gi|410672020|ref|YP_006924391.1|	-	0.0012	19.4	0.0	19	5.9	0.0	4.8	4	0	0	4	4	4	0	PAS	domain
GAF	PF01590.26	gi|410672020|ref|YP_006924391.1|	-	0.0037	17.9	0.0	0.01	16.4	0.0	1.8	1	0	0	1	1	1	1	GAF	domain
FKBP_C	PF00254.28	gi|410672021|ref|YP_006924392.1|	-	6.1e-24	84.2	0.0	7.9e-24	83.8	0.0	1.2	1	0	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
tRNA_anti-codon	PF01336.25	gi|410672022|ref|YP_006924393.1|	-	1.4e-07	31.4	0.3	2.2e-07	30.8	0.3	1.3	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
NTP_transferase	PF00483.23	gi|410672023|ref|YP_006924394.1|	-	1.2e-47	162.6	0.0	1.6e-47	162.2	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.24	gi|410672023|ref|YP_006924394.1|	-	4.8e-17	60.9	29.0	2.6e-07	30.1	1.5	5.2	1	1	4	5	5	5	5	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|410672023|ref|YP_006924394.1|	-	1.9e-08	33.9	23.5	8.2e-05	22.3	2.9	4.5	4	0	0	4	4	4	4	Hexapeptide	repeat	of	succinyl-transferase
NTP_transf_3	PF12804.7	gi|410672023|ref|YP_006924394.1|	-	1.1e-07	32.3	0.0	1.6e-07	31.8	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Fucokinase	PF07959.12	gi|410672023|ref|YP_006924394.1|	-	0.0019	17.2	5.8	0.0045	16.0	2.6	2.2	1	1	1	2	2	2	1	L-fucokinase
DUF4954	PF16314.5	gi|410672023|ref|YP_006924394.1|	-	0.012	13.8	9.5	0.017	13.3	9.5	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4954)
LPG_synthase_TM	PF03706.13	gi|410672024|ref|YP_006924395.1|	-	2e-47	162.2	25.2	2.5e-47	161.9	25.2	1.1	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
DUF5080	PF16883.5	gi|410672024|ref|YP_006924395.1|	-	0.028	14.5	0.2	0.028	14.5	0.2	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF5080)
Radical_SAM	PF04055.21	gi|410672025|ref|YP_006924396.1|	-	1.8e-15	57.7	0.0	3.5e-15	56.8	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
HHH_3	PF12836.7	gi|410672025|ref|YP_006924396.1|	-	0.00025	21.2	0.0	0.0011	19.2	0.0	2.0	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
ILVD_EDD	PF00920.21	gi|410672027|ref|YP_006924398.1|	-	4.7e-218	725.0	2.8	5.3e-218	724.8	2.8	1.0	1	0	0	1	1	1	1	Dehydratase	family
Thymidylat_synt	PF00303.19	gi|410672030|ref|YP_006924401.1|	-	3.3e-09	36.3	0.1	6.8e-09	35.2	0.1	1.6	1	1	0	1	1	1	1	Thymidylate	synthase
DUF1577	PF07614.11	gi|410672030|ref|YP_006924401.1|	-	0.017	14.2	1.2	0.026	13.6	1.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1577)
Rad50_zn_hook	PF04423.14	gi|410672030|ref|YP_006924401.1|	-	0.43	10.5	4.8	16	5.4	0.0	3.5	3	0	0	3	3	3	0	Rad50	zinc	hook	motif
PTA_PTB	PF01515.19	gi|410672032|ref|YP_006924403.1|	-	5.1e-05	22.7	0.0	0.042	13.2	0.1	2.3	1	1	1	2	2	2	2	Phosphate	acetyl/butaryl	transferase
AAA	PF00004.29	gi|410672033|ref|YP_006924404.1|	-	8.4e-10	39.2	0.0	2e-09	38.0	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.15	gi|410672033|ref|YP_006924404.1|	-	1.2e-05	25.4	0.0	4.2e-05	23.6	0.0	1.9	1	1	1	2	2	2	1	Rad17	P-loop	domain
AAA_22	PF13401.6	gi|410672033|ref|YP_006924404.1|	-	3.2e-05	24.2	0.5	0.19	12.0	0.0	3.5	3	1	1	4	4	4	2	AAA	domain
AAA_16	PF13191.6	gi|410672033|ref|YP_006924404.1|	-	0.0011	19.4	0.0	0.0032	17.9	0.0	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
RuvB_N	PF05496.12	gi|410672033|ref|YP_006924404.1|	-	0.0011	18.7	0.0	0.0054	16.5	0.0	2.0	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_14	PF13173.6	gi|410672033|ref|YP_006924404.1|	-	0.0024	17.9	0.0	0.0064	16.5	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|410672033|ref|YP_006924404.1|	-	0.006	16.3	0.5	0.012	15.3	0.5	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_assoc_2	PF16193.5	gi|410672033|ref|YP_006924404.1|	-	0.0062	16.8	0.0	0.024	15.0	0.0	2.0	1	0	0	1	1	1	1	AAA	C-terminal	domain
DUF815	PF05673.13	gi|410672033|ref|YP_006924404.1|	-	0.0096	15.1	0.0	0.024	13.8	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
RFC1	PF08519.12	gi|410672033|ref|YP_006924404.1|	-	0.024	14.8	0.1	0.041	14.0	0.1	1.4	1	0	0	1	1	1	0	Replication	factor	RFC1	C	terminal	domain
IstB_IS21	PF01695.17	gi|410672033|ref|YP_006924404.1|	-	0.037	13.8	0.1	0.11	12.3	0.0	1.8	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
NACHT	PF05729.12	gi|410672033|ref|YP_006924404.1|	-	0.037	13.9	0.1	0.48	10.3	0.1	2.3	1	1	1	2	2	2	0	NACHT	domain
DUF4092	PF13322.6	gi|410672033|ref|YP_006924404.1|	-	0.043	13.7	0.0	0.16	11.9	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4092)
DEAD	PF00270.29	gi|410672033|ref|YP_006924404.1|	-	0.1	12.4	0.1	1.9	8.2	0.0	2.3	1	1	1	2	2	2	0	DEAD/DEAH	box	helicase
AAA_5	PF07728.14	gi|410672033|ref|YP_006924404.1|	-	0.12	12.4	0.0	0.34	10.9	0.0	1.8	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_7	PF12775.7	gi|410672033|ref|YP_006924404.1|	-	0.15	11.5	0.0	0.34	10.4	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AsnC_trans_reg	PF01037.21	gi|410672034|ref|YP_006924405.1|	-	4.7e-10	39.3	0.1	4.9e-10	39.2	0.1	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
GYD	PF08734.11	gi|410672034|ref|YP_006924405.1|	-	5e-06	26.4	0.0	5.6e-06	26.2	0.0	1.1	1	0	0	1	1	1	1	GYD	domain
ACT_4	PF13291.6	gi|410672034|ref|YP_006924405.1|	-	0.027	15.1	0.0	0.17	12.5	0.0	1.9	2	0	0	2	2	2	0	ACT	domain
Topo-VIb_trans	PF09239.11	gi|410672035|ref|YP_006924406.1|	-	5.7e-67	224.5	0.0	1.1e-66	223.6	0.0	1.4	1	0	0	1	1	1	1	Topoisomerase	VI	B	subunit,	transducer
Top6b_C	PF18000.1	gi|410672035|ref|YP_006924406.1|	-	1.4e-44	150.9	0.1	2.7e-44	150.0	0.1	1.5	1	0	0	1	1	1	1	Type	2	DNA	topoisomerase	6	subunit	B	C-terminal	domain
HATPase_c	PF02518.26	gi|410672035|ref|YP_006924406.1|	-	6.9e-11	42.6	0.0	1.4e-10	41.6	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_3	PF13589.6	gi|410672035|ref|YP_006924406.1|	-	5e-07	29.6	0.0	1e-06	28.6	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
FbpA	PF05833.11	gi|410672035|ref|YP_006924406.1|	-	0.0037	16.1	0.0	0.015	14.1	0.0	1.9	2	0	0	2	2	2	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
HATPase_c_5	PF14501.6	gi|410672035|ref|YP_006924406.1|	-	0.056	13.4	0.0	0.14	12.1	0.0	1.6	1	0	0	1	1	1	0	GHKL	domain
TP6A_N	PF04406.14	gi|410672036|ref|YP_006924407.1|	-	9.7e-14	51.1	0.2	1.9e-13	50.2	0.2	1.4	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
cpYpsA	PF12694.7	gi|410672036|ref|YP_006924407.1|	-	0.12	12.1	0.0	0.21	11.3	0.0	1.3	1	0	0	1	1	1	0	Circularly	permutated	YpsA	SLOG	family
TPR_1	PF00515.28	gi|410672037|ref|YP_006924408.1|	-	7.4e-12	44.6	3.5	8.8e-06	25.3	0.1	3.5	3	0	0	3	3	3	2	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|410672037|ref|YP_006924408.1|	-	2e-11	43.1	1.5	0.0012	18.8	0.0	3.4	3	0	0	3	3	3	2	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|410672037|ref|YP_006924408.1|	-	8.3e-09	35.0	0.4	0.0039	17.3	0.0	3.5	3	0	0	3	3	3	2	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|410672037|ref|YP_006924408.1|	-	6e-06	26.3	0.3	0.0011	19.2	0.0	3.5	3	0	0	3	3	3	1	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|410672037|ref|YP_006924408.1|	-	8.8e-06	25.9	0.0	1.9e-05	24.8	0.0	1.6	1	1	0	1	1	1	1	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|410672037|ref|YP_006924408.1|	-	1.3e-05	24.8	0.2	0.0069	16.3	0.0	2.8	3	0	0	3	3	3	1	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|410672037|ref|YP_006924408.1|	-	8.9e-05	22.1	0.3	0.19	11.5	0.0	3.2	2	1	1	3	3	3	3	TPR	repeat
Fis1_TPR_C	PF14853.6	gi|410672037|ref|YP_006924408.1|	-	0.00015	21.8	0.9	0.0027	17.7	0.3	2.4	2	0	0	2	2	2	1	Fis1	C-terminal	tetratricopeptide	repeat
TPR_19	PF14559.6	gi|410672037|ref|YP_006924408.1|	-	0.00035	21.0	0.3	0.68	10.5	0.0	2.4	2	0	0	2	2	2	2	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|410672037|ref|YP_006924408.1|	-	0.00056	20.0	0.0	0.04	14.1	0.0	2.2	1	1	1	2	2	2	1	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|410672037|ref|YP_006924408.1|	-	0.0024	18.5	0.0	2.8	9.0	0.0	3.2	2	1	1	3	3	3	1	Tetratricopeptide	repeat
TPR_10	PF13374.6	gi|410672037|ref|YP_006924408.1|	-	0.066	13.1	0.1	7.2	6.6	0.0	2.5	2	0	0	2	2	2	0	Tetratricopeptide	repeat
DnaJ	PF00226.31	gi|410672038|ref|YP_006924409.1|	-	1.8e-23	82.4	0.5	2.5e-23	82.0	0.5	1.2	1	0	0	1	1	1	1	DnaJ	domain
Ctr	PF04145.15	gi|410672038|ref|YP_006924409.1|	-	0.013	16.1	1.0	0.019	15.6	1.0	1.3	1	1	0	1	1	1	0	Ctr	copper	transporter	family
Orf78	PF06024.12	gi|410672038|ref|YP_006924409.1|	-	0.11	12.8	0.1	0.11	12.8	0.1	2.2	2	1	1	3	3	3	0	Orf78	(ac78)
CutA1	PF03091.15	gi|410672039|ref|YP_006924410.1|	-	1.7e-32	111.2	0.8	1.9e-32	111.0	0.8	1.0	1	0	0	1	1	1	1	CutA1	divalent	ion	tolerance	protein
DUF4873	PF16170.5	gi|410672039|ref|YP_006924410.1|	-	0.037	14.2	0.0	0.041	14.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4873)
CTP_transf_like	PF01467.26	gi|410672042|ref|YP_006924413.1|	-	4.4e-05	23.7	0.0	0.00028	21.1	0.0	2.2	1	1	0	1	1	1	1	Cytidylyltransferase-like
p47_phox_C	PF08944.11	gi|410672042|ref|YP_006924413.1|	-	0.28	10.6	0.9	0.55	9.7	0.1	1.9	2	0	0	2	2	2	0	NADPH	oxidase	subunit	p47Phox,	C	terminal	domain
PTS_IIA	PF02255.16	gi|410672042|ref|YP_006924413.1|	-	0.58	10.2	2.6	0.75	9.9	0.1	2.4	3	0	0	3	3	3	0	PTS	system,	Lactose/Cellobiose	specific	IIA	subunit
Response_reg	PF00072.24	gi|410672043|ref|YP_006924414.1|	-	1e-27	96.5	0.1	1.2e-27	96.3	0.1	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Flavodoxin_2	PF02525.17	gi|410672045|ref|YP_006924416.1|	-	3.8e-53	180.2	0.1	4.2e-53	180.0	0.1	1.0	1	0	0	1	1	1	1	Flavodoxin-like	fold
FMN_red	PF03358.15	gi|410672045|ref|YP_006924416.1|	-	2.9e-15	56.3	0.0	1.1e-14	54.4	0.0	1.8	1	1	0	1	1	1	1	NADPH-dependent	FMN	reductase
Nuc_deoxyri_tr2	PF15891.5	gi|410672045|ref|YP_006924416.1|	-	0.15	12.4	0.1	1	9.7	0.1	2.2	1	1	0	1	1	1	0	Nucleoside	2-deoxyribosyltransferase	like
OCD_Mu_crystall	PF02423.15	gi|410672046|ref|YP_006924417.1|	-	9.1e-110	366.5	0.5	1.1e-109	366.2	0.5	1.0	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Shikimate_DH	PF01488.20	gi|410672046|ref|YP_006924417.1|	-	8.5e-05	22.6	0.0	0.00015	21.9	0.0	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
THF_DHG_CYH_C	PF02882.19	gi|410672046|ref|YP_006924417.1|	-	0.095	12.0	0.6	0.25	10.6	0.1	2.0	2	0	0	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
DNA_gyraseB	PF00204.25	gi|410672047|ref|YP_006924418.1|	-	9.1e-64	214.1	1.1	1.4e-63	213.5	1.1	1.3	1	0	0	1	1	1	1	DNA	gyrase	B
DNA_gyraseB_C	PF00986.21	gi|410672047|ref|YP_006924418.1|	-	3.6e-32	110.3	0.2	6.8e-32	109.5	0.2	1.5	1	0	0	1	1	1	1	DNA	gyrase	B	subunit,	carboxyl	terminus
HATPase_c	PF02518.26	gi|410672047|ref|YP_006924418.1|	-	5.1e-23	81.7	0.1	1.6e-22	80.2	0.1	1.9	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Toprim	PF01751.22	gi|410672047|ref|YP_006924418.1|	-	2.7e-16	59.7	0.0	6.4e-16	58.5	0.0	1.7	1	0	0	1	1	1	1	Toprim	domain
HATPase_c_3	PF13589.6	gi|410672047|ref|YP_006924418.1|	-	0.00045	20.0	0.0	0.00091	19.1	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Raf1_N	PF18578.1	gi|410672047|ref|YP_006924418.1|	-	0.12	12.9	0.2	0.26	11.8	0.2	1.6	1	0	0	1	1	1	0	Rubisco	accumulation	factor	1	alpha	helical	domain
MHB	PF16525.5	gi|410672047|ref|YP_006924418.1|	-	0.18	12.1	0.1	0.61	10.4	0.1	1.9	1	0	0	1	1	1	0	Haemophore,	haem-binding
DNA_topoisoIV	PF00521.20	gi|410672048|ref|YP_006924419.1|	-	7.3e-158	525.9	1.7	1.1e-157	525.3	1.7	1.3	1	0	0	1	1	1	1	DNA	gyrase/topoisomerase	IV,	subunit	A
DNA_gyraseA_C	PF03989.13	gi|410672048|ref|YP_006924419.1|	-	1.3e-78	258.2	13.7	2.5e-14	52.5	0.1	6.5	6	0	0	6	6	6	6	DNA	gyrase	C-terminal	domain,	beta-propeller
BLYB	PF05289.11	gi|410672048|ref|YP_006924419.1|	-	5.9	7.1	10.3	10	6.3	3.5	3.0	2	1	1	3	3	3	0	Borrelia	hemolysin	accessory	protein
SOR_SNZ	PF01680.17	gi|410672049|ref|YP_006924420.1|	-	4.5e-105	350.0	10.8	6.7e-105	349.4	10.8	1.2	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.14	gi|410672049|ref|YP_006924420.1|	-	2.8e-10	39.9	8.1	1.9e-06	27.4	1.8	2.4	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
NanE	PF04131.14	gi|410672049|ref|YP_006924420.1|	-	0.0016	17.6	5.2	0.018	14.3	0.2	3.0	2	1	0	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
Dus	PF01207.17	gi|410672049|ref|YP_006924420.1|	-	0.0051	16.0	2.2	0.51	9.4	0.2	2.5	2	1	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
NMO	PF03060.15	gi|410672049|ref|YP_006924420.1|	-	0.011	15.1	0.7	0.011	15.1	0.7	2.3	2	0	0	2	2	2	0	Nitronate	monooxygenase
IGPS	PF00218.21	gi|410672049|ref|YP_006924420.1|	-	0.031	13.5	0.2	0.99	8.5	0.0	2.3	2	0	0	2	2	2	0	Indole-3-glycerol	phosphate	synthase
SNO	PF01174.19	gi|410672050|ref|YP_006924421.1|	-	3.5e-54	183.5	0.0	3.9e-54	183.3	0.0	1.0	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.14	gi|410672050|ref|YP_006924421.1|	-	3.3e-12	46.4	0.2	8.7e-12	45.0	0.2	1.7	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.28	gi|410672050|ref|YP_006924421.1|	-	3.1e-07	30.4	0.0	1.4e-06	28.2	0.0	1.8	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
DJ-1_PfpI	PF01965.24	gi|410672050|ref|YP_006924421.1|	-	0.00019	21.3	0.0	0.00029	20.7	0.0	1.3	1	0	0	1	1	1	1	DJ-1/PfpI	family
Peptidase_S51	PF03575.17	gi|410672050|ref|YP_006924421.1|	-	0.00024	20.8	0.0	0.00032	20.4	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	S51
DUF1421	PF07223.11	gi|410672050|ref|YP_006924421.1|	-	0.056	13.3	0.0	0.13	12.1	0.0	1.6	1	0	0	1	1	1	0	UBA-like	domain	(DUF1421)
Putative_PNPOx	PF01243.20	gi|410672051|ref|YP_006924422.1|	-	2.7e-15	56.3	0.0	3.3e-15	56.0	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
S-layer	PF07752.11	gi|410672051|ref|YP_006924422.1|	-	0.16	11.0	0.0	0.22	10.5	0.0	1.2	1	0	0	1	1	1	0	S-layer	protein
Ribosomal_S6e	PF01092.19	gi|410672054|ref|YP_006924425.1|	-	1.8e-40	137.8	0.1	2.1e-40	137.6	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S6e
GTP_EFTU	PF00009.27	gi|410672055|ref|YP_006924426.1|	-	2.1e-32	112.3	0.4	4.3e-31	108.0	0.1	2.7	2	1	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D4	PF14578.6	gi|410672055|ref|YP_006924426.1|	-	1.7e-27	95.2	1.9	1.7e-27	95.2	1.9	2.2	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	4
IF-2	PF11987.8	gi|410672055|ref|YP_006924426.1|	-	1.3e-22	79.9	5.4	1.4e-22	79.7	3.0	2.3	2	0	0	2	2	2	1	Translation-initiation	factor	2
GTP_EFTU_D2	PF03144.25	gi|410672055|ref|YP_006924426.1|	-	1.2e-13	51.2	11.4	3.3e-11	43.4	0.1	3.3	3	0	0	3	3	3	2	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|410672055|ref|YP_006924426.1|	-	2.8e-08	33.8	0.9	1.1e-07	31.9	0.0	2.4	2	1	0	2	2	2	1	50S	ribosome-binding	GTPase
PduV-EutP	PF10662.9	gi|410672055|ref|YP_006924426.1|	-	0.036	13.8	0.6	1.3	8.8	0.0	3.2	4	0	0	4	4	4	0	Ethanolamine	utilisation	-	propanediol	utilisation
cobW	PF02492.19	gi|410672055|ref|YP_006924426.1|	-	0.046	13.3	0.0	13	5.4	0.0	2.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
ATP_bind_1	PF03029.17	gi|410672055|ref|YP_006924426.1|	-	0.077	12.8	0.0	0.23	11.2	0.0	1.8	1	1	1	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
DprA_WH	PF17782.1	gi|410672055|ref|YP_006924426.1|	-	0.13	12.4	0.1	0.4	10.8	0.0	1.9	2	0	0	2	2	2	0	DprA	winged	helix	domain
NDK	PF00334.19	gi|410672056|ref|YP_006924427.1|	-	2.2e-55	186.4	0.1	2.5e-55	186.2	0.1	1.0	1	0	0	1	1	1	1	Nucleoside	diphosphate	kinase
Ribosomal_L24e	PF01246.20	gi|410672057|ref|YP_006924428.1|	-	5.4e-22	77.8	0.2	5.8e-22	77.7	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L24e
YHS	PF04945.13	gi|410672057|ref|YP_006924428.1|	-	8.3e-07	29.0	0.2	1.2e-06	28.5	0.2	1.2	1	0	0	1	1	1	1	YHS	domain
zf-FCS	PF06467.14	gi|410672057|ref|YP_006924428.1|	-	3.6e-06	26.8	2.0	4.9e-06	26.4	2.0	1.2	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
VATC	PF18716.1	gi|410672057|ref|YP_006924428.1|	-	0.019	14.8	3.2	0.038	13.8	3.2	1.5	1	1	0	1	1	1	0	Vms1-associating	treble	clef	domain
DUF2116	PF09889.9	gi|410672057|ref|YP_006924428.1|	-	0.067	13.2	0.2	0.51	10.4	0.0	2.0	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
ICAM_N	PF03921.14	gi|410672057|ref|YP_006924428.1|	-	0.12	12.0	0.0	0.13	11.9	0.0	1.2	1	0	0	1	1	1	0	Intercellular	adhesion	molecule	(ICAM),	N-terminal	domain
Ribosomal_S28e	PF01200.18	gi|410672058|ref|YP_006924429.1|	-	1.1e-28	99.0	0.4	1.2e-28	98.8	0.4	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S28e
Ribosomal_L7Ae	PF01248.26	gi|410672059|ref|YP_006924430.1|	-	4.6e-25	87.2	1.0	5.4e-25	87.0	1.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.6	gi|410672059|ref|YP_006924430.1|	-	0.053	13.4	0.0	0.074	13.0	0.0	1.3	1	0	0	1	1	1	0	PELOTA	RNA	binding	domain
UPF0051	PF01458.17	gi|410672061|ref|YP_006924432.1|	-	8.3e-56	189.1	0.5	1.2e-55	188.6	0.5	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
DUF3618	PF12277.8	gi|410672061|ref|YP_006924432.1|	-	0.087	13.1	0.4	10	6.5	0.2	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3618)
ABC_tran	PF00005.27	gi|410672062|ref|YP_006924433.1|	-	2.4e-18	67.0	0.0	3.3e-18	66.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|410672062|ref|YP_006924433.1|	-	3.8e-08	33.5	0.3	0.0011	18.8	0.1	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|410672062|ref|YP_006924433.1|	-	0.0099	15.6	0.1	0.023	14.4	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|410672062|ref|YP_006924433.1|	-	0.037	14.5	0.0	0.072	13.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|410672062|ref|YP_006924433.1|	-	0.078	12.4	0.5	0.45	9.9	0.2	2.0	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_13	PF13166.6	gi|410672062|ref|YP_006924433.1|	-	0.11	11.2	0.0	0.14	10.7	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|410672062|ref|YP_006924433.1|	-	0.11	12.7	0.0	0.16	12.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|410672062|ref|YP_006924433.1|	-	0.12	11.9	0.1	0.21	11.1	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|410672062|ref|YP_006924433.1|	-	0.14	12.1	0.1	0.22	11.4	0.1	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_15	PF13175.6	gi|410672062|ref|YP_006924433.1|	-	0.22	11.2	0.0	0.72	9.5	0.0	1.7	2	0	0	2	2	2	0	AAA	ATPase	domain
HTH_45	PF14947.6	gi|410672063|ref|YP_006924434.1|	-	7e-19	67.6	0.9	7.6e-19	67.5	0.9	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_24	PF13412.6	gi|410672063|ref|YP_006924434.1|	-	0.0022	17.5	0.2	0.06	12.9	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
Crp	PF00325.20	gi|410672063|ref|YP_006924434.1|	-	0.0028	17.3	0.3	0.015	14.9	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	crp	family
DUF4364	PF14277.6	gi|410672063|ref|YP_006924434.1|	-	0.0044	16.8	0.3	0.0046	16.7	0.3	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
DUF2774	PF11242.8	gi|410672063|ref|YP_006924434.1|	-	0.0045	17.2	0.3	0.041	14.1	0.0	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2774)
HTH_Crp_2	PF13545.6	gi|410672063|ref|YP_006924434.1|	-	0.021	14.8	0.0	0.041	13.9	0.0	1.6	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
RNA_pol_Rpc34	PF05158.12	gi|410672063|ref|YP_006924434.1|	-	0.03	13.7	0.1	0.032	13.6	0.1	1.1	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
DUF2250	PF10007.9	gi|410672063|ref|YP_006924434.1|	-	0.033	14.3	0.2	0.038	14.1	0.2	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
TrmB	PF01978.19	gi|410672063|ref|YP_006924434.1|	-	0.044	13.7	0.1	0.1	12.5	0.1	1.6	1	1	1	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|410672063|ref|YP_006924434.1|	-	0.098	12.6	0.1	0.15	12.0	0.0	1.4	2	0	0	2	2	2	0	MarR	family
HTH_27	PF13463.6	gi|410672063|ref|YP_006924434.1|	-	0.12	12.9	0.1	0.15	12.6	0.1	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|410672063|ref|YP_006924434.1|	-	0.15	11.9	0.0	3	7.7	0.0	2.1	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
Sua5_yciO_yrdC	PF01300.18	gi|410672067|ref|YP_006924438.1|	-	5.7e-56	188.8	0.0	1.1e-55	187.9	0.0	1.4	1	0	0	1	1	1	1	Telomere	recombination
SUA5	PF03481.13	gi|410672067|ref|YP_006924438.1|	-	1.1e-32	113.4	0.0	1.6e-32	112.9	0.0	1.2	1	0	0	1	1	1	1	Putative	GTP-binding	controlling	metal-binding
NurA	PF09376.10	gi|410672067|ref|YP_006924438.1|	-	0.035	13.8	0.0	0.049	13.3	0.0	1.2	1	0	0	1	1	1	0	NurA	domain
PhaG_MnhG_YufB	PF03334.14	gi|410672068|ref|YP_006924439.1|	-	5.6e-26	90.6	13.5	6.8e-26	90.3	13.5	1.1	1	0	0	1	1	1	1	Na+/H+	antiporter	subunit
Nitrate_red_gam	PF02665.14	gi|410672068|ref|YP_006924439.1|	-	0.21	11.1	5.4	0.31	10.6	5.4	1.3	1	1	0	1	1	1	0	Nitrate	reductase	gamma	subunit
Tetraspanin	PF00335.20	gi|410672068|ref|YP_006924439.1|	-	0.29	10.8	2.3	1	9.0	2.3	1.8	1	1	0	1	1	1	0	Tetraspanin	family
DUF3899	PF13038.6	gi|410672068|ref|YP_006924439.1|	-	1.6	9.2	7.6	18	5.9	0.0	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3899)
MrpF_PhaF	PF04066.13	gi|410672069|ref|YP_006924440.1|	-	6.7e-20	71.2	9.2	7e-20	71.2	4.0	2.1	2	0	0	2	2	2	1	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
DUF2157	PF09925.9	gi|410672069|ref|YP_006924440.1|	-	0.13	12.0	1.6	0.15	11.8	1.6	1.2	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
Deltameth_res	PF16020.5	gi|410672069|ref|YP_006924440.1|	-	0.15	12.0	1.2	0.54	10.2	0.1	2.2	3	0	0	3	3	3	0	Deltamethrin	resistance
MNHE	PF01899.16	gi|410672070|ref|YP_006924441.1|	-	6.6e-40	136.2	1.1	7.4e-40	136.1	1.1	1.0	1	0	0	1	1	1	1	Na+/H+	ion	antiporter	subunit
Proton_antipo_M	PF00361.20	gi|410672071|ref|YP_006924442.1|	-	2e-63	214.4	28.8	2e-63	214.4	28.8	1.9	2	1	0	2	2	2	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|410672071|ref|YP_006924442.1|	-	0.00033	20.7	0.5	0.00033	20.7	0.5	3.5	4	0	0	4	4	4	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q2	PF00420.24	gi|410672072|ref|YP_006924443.1|	-	1.5e-33	114.6	3.9	2e-33	114.1	3.9	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF5527	PF17665.1	gi|410672072|ref|YP_006924443.1|	-	1.5	8.3	3.2	0.59	9.7	0.1	1.8	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5527)
MnhB	PF04039.13	gi|410672073|ref|YP_006924444.1|	-	6.3e-33	113.7	10.3	7.2e-33	113.5	10.3	1.0	1	0	0	1	1	1	1	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
Proton_antipo_M	PF00361.20	gi|410672074|ref|YP_006924445.1|	-	2.5e-69	233.7	21.8	2.5e-69	233.7	21.8	2.6	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
DUF4040	PF13244.6	gi|410672074|ref|YP_006924445.1|	-	3.1e-18	65.7	9.1	3.1e-18	65.7	9.1	4.3	5	0	0	5	5	5	1	Domain	of	unknown	function	(DUF4040)
Proton_antipo_N	PF00662.20	gi|410672074|ref|YP_006924445.1|	-	2.6e-12	46.6	3.0	1.1e-10	41.4	0.1	3.5	2	0	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
HAD_2	PF13419.6	gi|410672075|ref|YP_006924446.1|	-	5.2e-32	111.3	0.0	6.3e-32	111.1	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|410672075|ref|YP_006924446.1|	-	3.2e-14	53.7	0.0	5.7e-14	52.9	0.0	1.4	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|410672075|ref|YP_006924446.1|	-	0.011	15.8	0.2	0.033	14.3	0.0	1.9	2	0	0	2	2	2	0	HAD-hyrolase-like
KH_7	PF17214.3	gi|410672076|ref|YP_006924447.1|	-	2.9e-30	104.0	2.7	1.4e-28	98.6	0.4	3.0	2	0	0	2	2	2	1	KH	domain
Beta-Casp	PF10996.8	gi|410672076|ref|YP_006924447.1|	-	2e-26	92.4	0.0	5.1e-26	91.1	0.0	1.7	1	0	0	1	1	1	1	Beta-Casp	domain
RMMBL	PF07521.12	gi|410672076|ref|YP_006924447.1|	-	6.3e-18	64.5	0.3	2.6e-17	62.5	0.0	2.3	2	0	0	2	2	2	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B	PF00753.27	gi|410672076|ref|YP_006924447.1|	-	3.6e-16	59.8	1.0	2.8e-15	56.9	0.5	2.6	2	1	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_6	PF16661.5	gi|410672076|ref|YP_006924447.1|	-	3.7e-15	55.9	0.0	6e-15	55.2	0.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|410672076|ref|YP_006924447.1|	-	4.5e-10	39.4	0.1	9.5e-10	38.3	0.1	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
KH_2	PF07650.17	gi|410672076|ref|YP_006924447.1|	-	2.7e-06	27.1	0.6	2e-05	24.4	0.2	2.5	2	0	0	2	2	2	1	KH	domain
Lactamase_B_3	PF13483.6	gi|410672076|ref|YP_006924447.1|	-	0.00031	20.7	0.0	0.00065	19.6	0.0	1.7	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
KH_4	PF13083.6	gi|410672076|ref|YP_006924447.1|	-	0.0034	17.2	0.0	0.0075	16.1	0.0	1.6	1	0	0	1	1	1	1	KH	domain
KH_1	PF00013.29	gi|410672076|ref|YP_006924447.1|	-	0.015	15.1	1.6	0.045	13.6	0.4	2.3	2	1	0	2	2	2	0	KH	domain
DUF3489	PF11994.8	gi|410672076|ref|YP_006924447.1|	-	0.074	13.1	0.0	0.15	12.1	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3489)
Proteasome	PF00227.26	gi|410672077|ref|YP_006924448.1|	-	6.9e-57	192.0	2.3	8e-57	191.8	2.3	1.0	1	0	0	1	1	1	1	Proteasome	subunit
Pyrophosphatase	PF00719.19	gi|410672077|ref|YP_006924448.1|	-	0.058	13.2	0.0	0.097	12.5	0.0	1.3	1	0	0	1	1	1	0	Inorganic	pyrophosphatase
HD	PF01966.22	gi|410672078|ref|YP_006924449.1|	-	1.4e-14	54.3	1.9	2e-14	53.8	1.9	1.3	1	0	0	1	1	1	1	HD	domain
HDOD	PF08668.12	gi|410672078|ref|YP_006924449.1|	-	0.0069	15.9	0.1	0.047	13.2	0.0	1.9	1	1	1	2	2	2	1	HDOD	domain
NAD_binding_11	PF14833.6	gi|410672078|ref|YP_006924449.1|	-	0.12	12.6	0.0	1.8	8.8	0.0	2.4	3	0	0	3	3	3	0	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
TFIIE_alpha	PF02002.17	gi|410672079|ref|YP_006924450.1|	-	4.3e-17	61.9	0.1	5.8e-17	61.5	0.1	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
ATP-grasp_3	PF02655.14	gi|410672080|ref|YP_006924451.1|	-	1.8e-37	128.9	0.0	2.7e-37	128.3	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|410672080|ref|YP_006924451.1|	-	4.3e-08	32.9	0.0	2.3e-07	30.5	0.0	2.0	1	1	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATPgrasp_Ter	PF15632.6	gi|410672080|ref|YP_006924451.1|	-	5.5e-08	32.6	0.0	2.2e-07	30.7	0.0	1.9	1	1	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATPgrasp_ST	PF14397.6	gi|410672080|ref|YP_006924451.1|	-	3e-06	26.7	0.0	0.00015	21.1	0.0	2.2	2	0	0	2	2	2	1	Sugar-transfer	associated	ATP-grasp
Dala_Dala_lig_C	PF07478.13	gi|410672080|ref|YP_006924451.1|	-	0.031	13.8	0.0	0.24	10.9	0.0	2.0	1	1	0	1	1	1	0	D-ala	D-ala	ligase	C-terminus
NMD3	PF04981.13	gi|410672081|ref|YP_006924452.1|	-	5e-52	176.8	0.2	6.8e-52	176.4	0.2	1.2	1	0	0	1	1	1	1	NMD3	family
zf-ribbon_3	PF13248.6	gi|410672081|ref|YP_006924452.1|	-	0.001	18.4	3.2	0.36	10.3	0.1	2.8	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|410672081|ref|YP_006924452.1|	-	0.027	14.2	1.9	2.9	7.7	0.0	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|410672081|ref|YP_006924452.1|	-	0.061	13.1	3.2	6.6	6.6	0.2	2.7	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-NADH-PPase	PF09297.11	gi|410672081|ref|YP_006924452.1|	-	0.14	11.8	2.2	4.5	7.0	0.5	2.4	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-IS66	PF13005.7	gi|410672081|ref|YP_006924452.1|	-	0.27	11.7	2.4	25	5.4	0.3	2.9	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Zn-ribbon_8	PF09723.10	gi|410672081|ref|YP_006924452.1|	-	0.33	11.1	5.8	8.4	6.6	0.1	3.3	3	1	0	3	3	3	0	Zinc	ribbon	domain
Nudix_N_2	PF14803.6	gi|410672081|ref|YP_006924452.1|	-	1.3	9.0	8.4	6.8	6.7	0.1	4.1	4	0	0	4	4	4	0	Nudix	N-terminal
DZR	PF12773.7	gi|410672081|ref|YP_006924452.1|	-	3.4	7.8	9.4	1.5e+02	2.5	9.4	3.1	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF362	PF04015.12	gi|410672082|ref|YP_006924453.1|	-	7.7e-37	127.5	0.1	9.3e-37	127.2	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF362)
Fer4	PF00037.27	gi|410672082|ref|YP_006924453.1|	-	2.2e-08	33.6	5.7	0.00019	21.1	1.9	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|410672082|ref|YP_006924453.1|	-	4.5e-06	26.5	5.0	0.00048	20.1	1.8	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|410672082|ref|YP_006924453.1|	-	1.6e-05	25.4	2.0	0.00064	20.3	0.5	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410672082|ref|YP_006924453.1|	-	0.00085	19.4	4.3	0.0017	18.4	4.3	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410672082|ref|YP_006924453.1|	-	0.0024	17.9	7.0	0.0057	16.7	7.0	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410672082|ref|YP_006924453.1|	-	0.0029	17.6	2.5	0.0029	17.6	2.5	2.6	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Lar_N	PF09861.9	gi|410672082|ref|YP_006924453.1|	-	0.019	14.2	0.2	0.11	11.7	0.3	1.9	1	1	1	2	2	2	0	Lactate	racemase	N-terminal	domain
Fer4_9	PF13187.6	gi|410672082|ref|YP_006924453.1|	-	0.059	13.5	7.0	0.27	11.4	7.4	1.9	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|410672082|ref|YP_006924453.1|	-	0.48	11.5	7.0	5.5	8.2	1.9	2.8	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|410672082|ref|YP_006924453.1|	-	2.4	8.9	10.6	2.4	8.9	3.9	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
HTH_32	PF13565.6	gi|410672085|ref|YP_006924456.1|	-	0.058	14.0	0.0	3.1	8.5	0.0	2.1	2	0	0	2	2	2	0	Homeodomain-like	domain
CdhD	PF03599.16	gi|410672086|ref|YP_006924457.1|	-	2e-156	520.6	0.1	2.3e-156	520.3	0.1	1.0	1	0	0	1	1	1	1	CO	dehydrogenase/acetyl-CoA	synthase	delta	subunit
FeS	PF04060.13	gi|410672086|ref|YP_006924457.1|	-	1.5e-12	46.9	0.7	2.8e-12	46.1	0.7	1.5	1	0	0	1	1	1	1	Putative	Fe-S	cluster
Pterin_bind	PF00809.22	gi|410672086|ref|YP_006924457.1|	-	0.0083	15.8	0.1	0.54	9.9	0.1	2.2	1	1	0	1	1	1	1	Pterin	binding	enzyme
DUF5608	PF18356.1	gi|410672086|ref|YP_006924457.1|	-	0.039	14.0	0.2	0.37	10.8	0.1	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5608)
CdhD	PF03599.16	gi|410672087|ref|YP_006924458.1|	-	3.4e-88	296.0	1.8	2.5e-80	270.0	0.2	3.1	1	1	2	3	3	3	3	CO	dehydrogenase/acetyl-CoA	synthase	delta	subunit
CbiA	PF01656.23	gi|410672088|ref|YP_006924459.1|	-	3.2e-19	69.3	0.1	4.3e-19	68.8	0.1	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|410672088|ref|YP_006924459.1|	-	1.1e-16	61.3	0.0	2.1e-16	60.4	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
Fer4_NifH	PF00142.18	gi|410672088|ref|YP_006924459.1|	-	6.2e-14	52.1	0.6	1.4e-13	50.9	0.6	1.5	1	1	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ParA	PF10609.9	gi|410672088|ref|YP_006924459.1|	-	3.2e-09	36.6	0.5	2.3e-08	33.8	0.5	2.0	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|410672088|ref|YP_006924459.1|	-	6.9e-09	35.3	1.4	2.1e-08	33.7	1.4	2.0	1	1	0	1	1	1	1	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|410672088|ref|YP_006924459.1|	-	1.2e-05	24.9	0.1	0.00021	20.9	0.1	2.6	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
Toprim_4	PF13662.6	gi|410672088|ref|YP_006924459.1|	-	8.9e-05	22.9	0.1	0.005	17.3	0.0	2.5	2	0	0	2	2	2	1	Toprim	domain
Toprim	PF01751.22	gi|410672088|ref|YP_006924459.1|	-	0.00012	22.3	0.2	0.025	14.8	0.0	2.4	1	1	0	2	2	2	1	Toprim	domain
AAA_22	PF13401.6	gi|410672088|ref|YP_006924459.1|	-	0.0025	18.1	0.2	0.0072	16.6	0.2	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_26	PF13500.6	gi|410672088|ref|YP_006924459.1|	-	0.0033	17.3	1.3	0.63	9.8	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
DUF87	PF01935.17	gi|410672088|ref|YP_006924459.1|	-	0.0048	17.0	2.8	0.0063	16.6	0.2	2.2	2	1	0	2	2	2	1	Helicase	HerA,	central	domain
DUF3798	PF12683.7	gi|410672088|ref|YP_006924459.1|	-	0.0062	16.0	0.0	0.32	10.4	0.0	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3798)
AAA_24	PF13479.6	gi|410672088|ref|YP_006924459.1|	-	0.0094	15.7	1.2	0.14	11.9	1.2	2.5	1	1	0	1	1	1	1	AAA	domain
Toprim_2	PF13155.6	gi|410672088|ref|YP_006924459.1|	-	0.017	15.5	0.1	5.8	7.4	0.0	2.3	2	0	0	2	2	2	0	Toprim-like
PDDEXK_10	PF07788.11	gi|410672088|ref|YP_006924459.1|	-	0.019	14.9	0.7	0.21	11.5	0.5	2.5	1	1	1	2	2	2	0	PD-(D/E)XK	nuclease	superfamily
ATPase	PF06745.13	gi|410672088|ref|YP_006924459.1|	-	0.02	14.3	0.3	0.044	13.1	0.1	1.8	1	1	1	2	2	2	0	KaiC
ResIII	PF04851.15	gi|410672088|ref|YP_006924459.1|	-	0.027	14.5	0.0	0.06	13.3	0.0	1.6	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
MipZ	PF09140.11	gi|410672088|ref|YP_006924459.1|	-	0.032	13.5	0.4	1.4	8.1	0.2	2.3	2	0	0	2	2	2	0	ATPase	MipZ
CoA_binding_3	PF13727.6	gi|410672088|ref|YP_006924459.1|	-	0.035	14.1	0.0	1	9.3	0.0	2.2	2	0	0	2	2	2	0	CoA-binding	domain
AAA_16	PF13191.6	gi|410672088|ref|YP_006924459.1|	-	0.065	13.6	0.0	0.089	13.2	0.0	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
DUF3929	PF13066.6	gi|410672088|ref|YP_006924459.1|	-	0.065	13.3	0.1	7.3	6.7	0.0	2.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3929)
AAA_30	PF13604.6	gi|410672088|ref|YP_006924459.1|	-	0.075	12.7	0.0	0.11	12.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|410672088|ref|YP_006924459.1|	-	0.085	12.8	3.8	2.8	7.8	0.1	2.2	2	0	0	2	2	2	0	NTPase
PP2C_2	PF13672.6	gi|410672088|ref|YP_006924459.1|	-	0.088	12.4	0.0	0.13	11.9	0.0	1.2	1	0	0	1	1	1	0	Protein	phosphatase	2C
Zeta_toxin	PF06414.12	gi|410672088|ref|YP_006924459.1|	-	0.17	11.1	0.2	0.33	10.2	0.2	1.4	1	0	0	1	1	1	0	Zeta	toxin
SRP54	PF00448.22	gi|410672088|ref|YP_006924459.1|	-	0.19	11.3	2.9	0.58	9.7	0.4	2.3	2	1	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_25	PF13481.6	gi|410672088|ref|YP_006924459.1|	-	1	8.9	3.1	3.5	7.2	0.6	2.7	2	2	0	2	2	2	0	AAA	domain
AAA_19	PF13245.6	gi|410672088|ref|YP_006924459.1|	-	6.3	7.1	6.2	2.3	8.6	1.1	2.5	2	2	1	3	3	3	0	AAA	domain
CdhC	PF03598.15	gi|410672089|ref|YP_006924460.1|	-	1.7e-64	216.4	0.4	2.5e-64	215.8	0.4	1.3	1	0	0	1	1	1	1	CO	dehydrogenase/acetyl-CoA	synthase	complex	beta	subunit
DUF4795	PF16043.5	gi|410672089|ref|YP_006924460.1|	-	1.7	8.2	6.5	0.29	10.7	2.0	1.8	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4795)
CO_dh	PF02552.16	gi|410672090|ref|YP_006924461.1|	-	2.7e-30	105.3	0.1	3.3e-30	105.0	0.1	1.0	1	0	0	1	1	1	1	CO	dehydrogenase	beta	subunit/acetyl-CoA	synthase	epsilon	subunit
TPP_enzyme_M	PF00205.22	gi|410672090|ref|YP_006924461.1|	-	0.0016	18.1	0.3	0.0031	17.3	0.3	1.7	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
Mfa2	PF08842.10	gi|410672090|ref|YP_006924461.1|	-	0.035	13.7	0.0	0.05	13.2	0.0	1.2	1	0	0	1	1	1	0	Fimbrillin-A	associated	anchor	proteins	Mfa1	and	Mfa2
Prismane	PF03063.20	gi|410672091|ref|YP_006924462.1|	-	4e-110	368.9	5.9	1.4e-94	317.7	0.1	2.2	1	1	1	2	2	2	2	Prismane/CO	dehydrogenase	family
Fer4_7	PF12838.7	gi|410672091|ref|YP_006924462.1|	-	2.8e-06	27.8	9.0	2.8e-06	27.8	9.0	2.5	2	0	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410672091|ref|YP_006924462.1|	-	3.3e-06	27.9	5.6	0.014	16.3	0.2	3.8	3	0	0	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|410672091|ref|YP_006924462.1|	-	7.3e-06	26.0	12.2	7.3e-06	26.0	12.2	2.6	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410672091|ref|YP_006924462.1|	-	8.9e-05	23.0	19.4	0.0019	18.7	0.2	3.7	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|410672091|ref|YP_006924462.1|	-	0.00027	20.6	3.7	0.00027	20.6	3.7	3.5	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|410672091|ref|YP_006924462.1|	-	0.00043	20.4	10.9	0.00043	20.4	10.9	2.7	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410672091|ref|YP_006924462.1|	-	0.0035	17.3	2.7	0.0035	17.3	2.7	3.2	3	0	0	3	3	2	1	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|410672091|ref|YP_006924462.1|	-	0.0037	17.6	1.3	0.0037	17.6	1.3	3.6	3	0	0	3	3	2	1	4Fe-4S	binding	domain
CODH_A_N	PF18537.1	gi|410672091|ref|YP_006924462.1|	-	0.0039	17.2	0.0	0.01	15.8	0.0	1.7	1	0	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	alpha	N-terminal	domain
Fer4_8	PF13183.6	gi|410672091|ref|YP_006924462.1|	-	0.0073	16.7	13.7	0.0073	16.7	13.7	3.1	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410672091|ref|YP_006924462.1|	-	0.0089	16.1	2.1	0.0089	16.1	2.1	3.9	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|410672091|ref|YP_006924462.1|	-	0.038	14.2	10.1	0.1	12.8	0.8	3.0	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410672091|ref|YP_006924462.1|	-	2.4	8.3	26.3	0.058	13.5	1.3	3.3	2	1	1	3	3	2	0	4Fe-4S	dicluster	domain
Rhomboid	PF01694.22	gi|410672092|ref|YP_006924463.1|	-	2.8e-35	121.5	15.2	4.6e-35	120.8	15.2	1.3	1	0	0	1	1	1	1	Rhomboid	family
zf-AN1	PF01428.16	gi|410672092|ref|YP_006924463.1|	-	9.7e-13	48.0	7.0	1.4e-12	47.5	7.0	1.2	1	0	0	1	1	1	1	AN1-like	Zinc	finger
DUF1751	PF08551.10	gi|410672092|ref|YP_006924463.1|	-	0.00014	22.4	1.1	0.00014	22.4	1.1	2.4	1	1	1	2	2	2	1	Eukaryotic	integral	membrane	protein	(DUF1751)
FYVE	PF01363.21	gi|410672092|ref|YP_006924463.1|	-	0.33	11.1	7.0	0.67	10.1	7.0	1.4	1	1	0	1	1	1	0	FYVE	zinc	finger
zf-C2H2_4	PF13894.6	gi|410672092|ref|YP_006924463.1|	-	0.35	11.8	5.7	0.19	12.7	2.9	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-CCHC	PF00098.23	gi|410672092|ref|YP_006924463.1|	-	1.2	9.3	4.2	2	8.7	0.2	2.2	2	0	0	2	2	2	0	Zinc	knuckle
NYN	PF01936.18	gi|410672094|ref|YP_006924465.1|	-	6.1e-25	88.4	0.0	8.2e-25	88.0	0.0	1.1	1	0	0	1	1	1	1	NYN	domain
DUF4479	PF14794.6	gi|410672094|ref|YP_006924465.1|	-	0.098	12.5	0.0	0.23	11.4	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4479)
Peptidase_C70	PF12385.8	gi|410672094|ref|YP_006924465.1|	-	0.18	11.8	0.0	0.29	11.1	0.0	1.2	1	0	0	1	1	1	0	Papain-like	cysteine	protease	AvrRpt2
HMGL-like	PF00682.19	gi|410672095|ref|YP_006924466.1|	-	1.1e-79	267.7	3.7	1.5e-79	267.3	3.7	1.1	1	0	0	1	1	1	1	HMGL-like
DUF561	PF04481.12	gi|410672095|ref|YP_006924466.1|	-	0.0011	18.2	0.5	1.4	8.0	0.1	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF561)
NAD_kinase	PF01513.21	gi|410672096|ref|YP_006924467.1|	-	3.4e-56	190.6	0.7	5.1e-56	190.0	0.7	1.2	1	0	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|410672096|ref|YP_006924467.1|	-	0.026	14.1	0.0	0.041	13.5	0.0	1.4	1	0	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
PK_C	PF02887.16	gi|410672096|ref|YP_006924467.1|	-	0.068	13.4	0.4	5.8	7.2	0.0	3.3	3	1	1	4	4	4	0	Pyruvate	kinase,	alpha/beta	domain
Inositol_P	PF00459.25	gi|410672097|ref|YP_006924468.1|	-	4.4e-38	131.3	0.0	5.2e-38	131.1	0.0	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
FBPase	PF00316.20	gi|410672097|ref|YP_006924468.1|	-	0.00096	18.7	0.0	0.0015	18.1	0.0	1.3	1	0	0	1	1	1	1	Fructose-1-6-bisphosphatase,	N-terminal	domain
Peptidase_S55	PF05580.12	gi|410672097|ref|YP_006924468.1|	-	0.14	12.1	0.1	0.24	11.3	0.1	1.3	1	0	0	1	1	1	0	SpoIVB	peptidase	S55
Gp_dh_C	PF02800.20	gi|410672098|ref|YP_006924469.1|	-	1.7e-27	95.9	0.0	2.6e-27	95.4	0.0	1.3	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
DapB_N	PF01113.20	gi|410672098|ref|YP_006924469.1|	-	6.9e-11	42.4	0.2	1.2e-10	41.6	0.2	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Gp_dh_N	PF00044.24	gi|410672098|ref|YP_006924469.1|	-	1.5e-06	28.5	0.7	1.7e-05	25.1	0.7	2.4	1	1	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|410672098|ref|YP_006924469.1|	-	0.00018	20.9	0.0	0.0021	17.4	0.0	2.2	1	1	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|410672098|ref|YP_006924469.1|	-	0.00073	19.1	0.3	0.012	15.2	0.1	2.5	2	1	1	3	3	3	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
GFO_IDH_MocA	PF01408.22	gi|410672098|ref|YP_006924469.1|	-	0.0037	18.1	0.0	0.0085	16.9	0.0	1.7	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_3	PF03447.16	gi|410672098|ref|YP_006924469.1|	-	0.006	17.2	0.0	0.013	16.2	0.0	1.6	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
PglD_N	PF17836.1	gi|410672098|ref|YP_006924469.1|	-	0.012	16.2	0.1	0.044	14.4	0.1	2.0	1	0	0	1	1	1	0	PglD	N-terminal	domain
TrkA_N	PF02254.18	gi|410672098|ref|YP_006924469.1|	-	0.014	15.6	0.0	0.033	14.5	0.0	1.6	1	0	0	1	1	1	0	TrkA-N	domain
Sacchrp_dh_NADP	PF03435.18	gi|410672098|ref|YP_006924469.1|	-	0.055	13.7	0.0	0.14	12.5	0.0	1.7	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
Semialdhyde_dh	PF01118.24	gi|410672098|ref|YP_006924469.1|	-	0.063	13.7	0.0	0.13	12.8	0.0	1.5	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
CooT	PF10133.9	gi|410672099|ref|YP_006924470.1|	-	3.7e-19	68.8	2.5	4e-19	68.6	2.5	1.0	1	0	0	1	1	1	1	CO	dehydrogenase	accessory	protein	CooT
DUF89	PF01937.19	gi|410672100|ref|YP_006924471.1|	-	7e-52	176.5	0.0	8.4e-52	176.3	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF89
Na_Ca_ex	PF01699.24	gi|410672101|ref|YP_006924472.1|	-	8.7e-57	191.3	30.4	8.6e-29	100.5	11.1	2.0	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
DUF3332	PF11810.8	gi|410672102|ref|YP_006924473.1|	-	0.00097	18.8	3.9	0.11	12.2	2.3	2.1	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3332)
MORN_2	PF07661.13	gi|410672102|ref|YP_006924473.1|	-	0.0077	16.3	0.0	0.052	13.8	0.0	2.4	1	1	1	2	2	2	1	MORN	repeat	variant
LolA_like	PF17131.4	gi|410672102|ref|YP_006924473.1|	-	0.016	14.9	0.1	0.023	14.4	0.1	1.2	1	0	0	1	1	1	0	Outer	membrane	lipoprotein-sorting	protein
SBP_bac_5	PF00496.22	gi|410672105|ref|YP_006924476.1|	-	7.7e-67	225.9	3.2	9.6e-67	225.6	3.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
FSAP_sig_propep	PF03032.15	gi|410672105|ref|YP_006924476.1|	-	0.016	15.2	0.3	0.028	14.4	0.3	1.4	1	0	0	1	1	1	0	Frog	skin	active	peptide	family	signal	and	propeptide
BPD_transp_1	PF00528.22	gi|410672106|ref|YP_006924477.1|	-	3.4e-41	141.0	12.1	3.4e-41	141.0	12.1	1.6	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|410672107|ref|YP_006924478.1|	-	5e-22	78.5	8.3	5e-22	78.5	8.3	1.8	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|410672108|ref|YP_006924479.1|	-	5.8e-22	78.7	0.1	8.8e-22	78.1	0.1	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|410672108|ref|YP_006924479.1|	-	3.7e-12	46.6	0.1	8.2e-12	45.5	0.1	1.7	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|410672108|ref|YP_006924479.1|	-	9.5e-07	28.9	0.0	0.0011	18.8	0.0	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Mg_chelatase	PF01078.21	gi|410672108|ref|YP_006924479.1|	-	0.00087	18.7	0.0	0.0013	18.1	0.0	1.3	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
SMC_N	PF02463.19	gi|410672108|ref|YP_006924479.1|	-	0.00098	18.6	0.3	0.0082	15.6	0.3	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|410672108|ref|YP_006924479.1|	-	0.0015	18.8	0.1	0.0082	16.4	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|410672108|ref|YP_006924479.1|	-	0.0055	17.1	0.1	0.0092	16.4	0.1	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|410672108|ref|YP_006924479.1|	-	0.036	13.8	0.1	0.065	13.0	0.1	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.6	gi|410672108|ref|YP_006924479.1|	-	0.068	13.3	0.0	0.16	12.1	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
DUF2075	PF09848.9	gi|410672108|ref|YP_006924479.1|	-	0.12	11.6	0.0	0.15	11.3	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA	PF00004.29	gi|410672108|ref|YP_006924479.1|	-	0.16	12.4	0.0	0.59	10.6	0.0	1.9	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF87	PF01935.17	gi|410672108|ref|YP_006924479.1|	-	0.85	9.7	2.7	0.84	9.7	1.0	1.8	2	1	1	3	3	3	0	Helicase	HerA,	central	domain
ABC_tran	PF00005.27	gi|410672109|ref|YP_006924480.1|	-	3.9e-25	88.9	0.0	5.6e-25	88.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|410672109|ref|YP_006924480.1|	-	0.00098	18.6	1.1	0.043	13.2	1.1	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|410672109|ref|YP_006924480.1|	-	0.0011	19.3	0.3	0.0039	17.5	0.3	1.8	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|410672109|ref|YP_006924480.1|	-	0.0019	18.1	0.7	0.008	16.1	0.2	1.9	2	0	0	2	2	2	1	RsgA	GTPase
AAA_29	PF13555.6	gi|410672109|ref|YP_006924480.1|	-	0.0021	17.7	1.1	0.011	15.4	0.3	2.2	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.6	gi|410672109|ref|YP_006924480.1|	-	0.0021	18.6	0.0	0.0051	17.4	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|410672109|ref|YP_006924480.1|	-	0.012	16.0	0.0	0.016	15.6	0.0	1.3	1	1	0	1	1	1	0	AAA	ATPase	domain
PduV-EutP	PF10662.9	gi|410672109|ref|YP_006924480.1|	-	0.021	14.6	0.3	0.057	13.2	0.1	1.7	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
TIP49	PF06068.13	gi|410672109|ref|YP_006924480.1|	-	0.037	13.2	0.0	0.056	12.6	0.0	1.2	1	0	0	1	1	1	0	TIP49	P-loop	domain
AAA_30	PF13604.6	gi|410672109|ref|YP_006924480.1|	-	0.045	13.5	0.1	0.25	11.0	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|410672109|ref|YP_006924480.1|	-	0.052	14.0	0.0	0.11	12.9	0.0	1.7	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
TniB	PF05621.11	gi|410672109|ref|YP_006924480.1|	-	0.056	12.9	0.2	6.8	6.1	0.1	2.2	2	0	0	2	2	2	0	Bacterial	TniB	protein
G-alpha	PF00503.20	gi|410672109|ref|YP_006924480.1|	-	0.063	12.4	0.0	0.069	12.3	0.0	1.2	1	0	0	1	1	1	0	G-protein	alpha	subunit
CLP1_P	PF16575.5	gi|410672109|ref|YP_006924480.1|	-	0.076	12.8	0.4	0.14	12.0	0.1	1.6	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
DLIC	PF05783.11	gi|410672109|ref|YP_006924480.1|	-	0.08	11.8	0.7	1.1	7.9	0.1	2.0	2	0	0	2	2	2	0	Dynein	light	intermediate	chain	(DLIC)
KAP_NTPase	PF07693.14	gi|410672109|ref|YP_006924480.1|	-	0.084	12.1	0.0	0.084	12.1	0.0	1.2	1	0	0	1	1	1	0	KAP	family	P-loop	domain
AAA_21	PF13304.6	gi|410672109|ref|YP_006924480.1|	-	0.087	12.6	1.6	0.14	11.9	0.2	1.9	1	1	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
MeaB	PF03308.16	gi|410672109|ref|YP_006924480.1|	-	0.12	11.4	0.0	0.19	10.7	0.0	1.3	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_23	PF13476.6	gi|410672109|ref|YP_006924480.1|	-	0.13	12.8	0.1	0.3	11.5	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|410672109|ref|YP_006924480.1|	-	0.19	11.0	0.0	0.31	10.3	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
CBS	PF00571.28	gi|410672110|ref|YP_006924481.1|	-	1.9e-17	63.5	7.1	4e-09	36.8	0.3	2.9	3	1	1	4	4	3	2	CBS	domain
HTH_3	PF01381.22	gi|410672110|ref|YP_006924481.1|	-	1.3e-13	50.8	0.1	2.5e-13	49.9	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|410672110|ref|YP_006924481.1|	-	2.9e-08	33.9	0.0	4.9e-08	33.2	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|410672110|ref|YP_006924481.1|	-	1.5e-06	28.1	0.1	2.9e-06	27.2	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|410672110|ref|YP_006924481.1|	-	0.00062	19.7	0.0	0.0021	18.0	0.0	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|410672110|ref|YP_006924481.1|	-	0.0018	18.1	0.0	0.0032	17.3	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Pou	PF00157.17	gi|410672110|ref|YP_006924481.1|	-	0.0018	18.2	0.1	0.032	14.2	0.0	2.5	2	1	0	2	2	2	1	Pou	domain	-	N-terminal	to	homeobox	domain
HTH_26	PF13443.6	gi|410672110|ref|YP_006924481.1|	-	0.004	17.6	0.0	0.0075	16.7	0.0	1.4	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
AIRS_C	PF02769.22	gi|410672110|ref|YP_006924481.1|	-	0.036	14.2	0.1	0.082	13.0	0.0	1.6	2	0	0	2	2	2	0	AIR	synthase	related	protein,	C-terminal	domain
MqsA_antitoxin	PF15731.5	gi|410672110|ref|YP_006924481.1|	-	0.041	14.0	0.0	0.08	13.1	0.0	1.5	1	0	0	1	1	1	0	Antitoxin	component	of	bacterial	toxin-antitoxin	system,	MqsA
HTH_Crp_2	PF13545.6	gi|410672110|ref|YP_006924481.1|	-	0.052	13.5	0.0	0.099	12.6	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Aminotran_5	PF00266.19	gi|410672111|ref|YP_006924482.1|	-	8.9e-43	146.6	0.0	1.1e-42	146.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|410672111|ref|YP_006924482.1|	-	0.0014	18.0	0.0	0.0025	17.1	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
DMRL_synthase	PF00885.19	gi|410672112|ref|YP_006924483.1|	-	3.3e-18	65.9	0.5	4.3e-18	65.5	0.5	1.1	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
DMRL_synthase	PF00885.19	gi|410672113|ref|YP_006924484.1|	-	2.9e-31	108.2	0.3	3.2e-31	108.0	0.3	1.0	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
Aminotran_1_2	PF00155.21	gi|410672114|ref|YP_006924485.1|	-	2.5e-65	221.0	0.0	2.8e-65	220.8	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|410672114|ref|YP_006924485.1|	-	4.4e-07	29.2	0.0	1.5e-06	27.5	0.0	1.8	2	0	0	2	2	2	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|410672114|ref|YP_006924485.1|	-	1.2e-05	24.1	0.0	2.3e-05	23.1	0.0	1.4	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|410672114|ref|YP_006924485.1|	-	0.0021	17.4	0.5	0.0054	16.1	0.1	1.8	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|410672114|ref|YP_006924485.1|	-	0.019	14.3	0.0	0.046	13.0	0.0	1.7	1	1	0	1	1	1	0	Beta-eliminating	lyase
CTP_transf_like	PF01467.26	gi|410672115|ref|YP_006924486.1|	-	4.9e-17	62.5	0.0	5.7e-17	62.2	0.0	1.0	1	0	0	1	1	1	1	Cytidylyltransferase-like
FAD_syn	PF06574.12	gi|410672115|ref|YP_006924486.1|	-	0.057	13.3	0.1	0.16	11.8	0.0	1.7	1	1	1	2	2	2	0	FAD	synthetase
Urm1	PF09138.11	gi|410672115|ref|YP_006924486.1|	-	0.15	12.5	0.1	0.22	11.9	0.1	1.4	1	0	0	1	1	1	0	Urm1	(Ubiquitin	related	modifier)
Cyt-b5	PF00173.28	gi|410672116|ref|YP_006924487.1|	-	2e-10	40.6	0.2	2.4e-10	40.4	0.2	1.1	1	0	0	1	1	1	1	Cytochrome	b5-like	Heme/Steroid	binding	domain
PMSR	PF01625.21	gi|410672117|ref|YP_006924488.1|	-	1.4e-63	213.7	0.6	1.6e-63	213.5	0.6	1.0	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
DUF1638	PF07796.11	gi|410672119|ref|YP_006924490.1|	-	2e-36	125.5	0.1	2.6e-36	125.2	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1638)
mRNA_decap_C	PF16741.5	gi|410672119|ref|YP_006924490.1|	-	0.026	13.8	0.1	0.044	13.1	0.1	1.4	1	0	0	1	1	1	0	mRNA-decapping	enzyme	C-terminus
Acetyltransf_1	PF00583.25	gi|410672121|ref|YP_006924492.1|	-	5.1e-19	68.6	0.1	6.3e-19	68.3	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|410672121|ref|YP_006924492.1|	-	2.5e-11	43.8	0.0	3.7e-11	43.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|410672121|ref|YP_006924492.1|	-	2.4e-09	37.2	0.0	3e-09	36.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|410672121|ref|YP_006924492.1|	-	0.00018	21.4	0.0	0.00038	20.4	0.0	1.5	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_CG	PF14542.6	gi|410672121|ref|YP_006924492.1|	-	0.0066	16.6	0.0	0.013	15.6	0.0	1.5	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_9	PF13527.7	gi|410672121|ref|YP_006924492.1|	-	0.015	15.4	0.0	0.02	15.0	0.0	1.5	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.6	gi|410672121|ref|YP_006924492.1|	-	0.08	12.9	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
AAA_21	PF13304.6	gi|410672122|ref|YP_006924493.1|	-	0.049	13.4	0.0	0.055	13.3	0.0	1.2	1	1	0	1	1	1	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Fes1	PF08609.10	gi|410672122|ref|YP_006924493.1|	-	0.18	12.7	0.1	0.22	12.4	0.1	1.1	1	0	0	1	1	1	0	Nucleotide	exchange	factor	Fes1
TPR_12	PF13424.6	gi|410672123|ref|YP_006924494.1|	-	1.2e-44	150.5	0.2	1.9e-17	63.3	0.0	3.1	2	1	1	3	3	3	3	Tetratricopeptide	repeat
TPR_10	PF13374.6	gi|410672123|ref|YP_006924494.1|	-	5.8e-43	143.6	0.0	5.4e-13	48.4	0.0	5.2	5	0	0	5	5	5	4	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|410672123|ref|YP_006924494.1|	-	3.2e-23	80.0	1.9	2.2e-07	30.4	0.1	5.0	5	0	0	5	5	5	4	Tetratricopeptide	repeat
TPR_1	PF00515.28	gi|410672123|ref|YP_006924494.1|	-	1.4e-19	69.0	4.5	1.3e-05	24.8	0.1	5.2	5	0	0	5	5	5	3	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|410672123|ref|YP_006924494.1|	-	2.2e-15	55.5	5.9	0.0026	17.7	0.0	5.2	5	0	0	5	5	5	3	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|410672123|ref|YP_006924494.1|	-	6.5e-12	45.0	2.4	0.013	15.8	0.0	6.0	5	3	0	5	5	5	3	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|410672123|ref|YP_006924494.1|	-	1.1e-11	44.0	9.9	0.039	14.2	0.1	5.1	5	0	0	5	5	5	3	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|410672123|ref|YP_006924494.1|	-	2.8e-09	37.5	2.0	0.015	16.0	0.0	4.0	2	1	2	4	4	3	2	Tetratricopeptide	repeat
TPR_MalT	PF17874.1	gi|410672123|ref|YP_006924494.1|	-	4.9e-06	26.1	0.0	2.1e-05	24.0	0.0	1.7	1	1	0	1	1	1	1	MalT-like	TPR	region
TPR_14	PF13428.6	gi|410672123|ref|YP_006924494.1|	-	7.2e-06	26.4	1.6	2.5	9.2	0.0	4.6	3	2	2	5	5	5	2	Tetratricopeptide	repeat
TPR_3	PF07720.12	gi|410672123|ref|YP_006924494.1|	-	1.5e-05	24.9	3.6	0.024	14.6	0.0	3.9	4	0	0	4	4	4	1	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|410672123|ref|YP_006924494.1|	-	0.00052	20.5	2.3	0.41	11.2	0.0	3.7	3	2	2	5	5	5	1	Tetratricopeptide	repeat
TPR_5	PF12688.7	gi|410672123|ref|YP_006924494.1|	-	0.0022	18.2	0.1	0.5	10.6	0.0	3.5	2	1	0	3	3	3	1	Tetratrico	peptide	repeat
ANAPC3	PF12895.7	gi|410672123|ref|YP_006924494.1|	-	0.0035	17.5	2.1	2	8.7	0.1	3.3	2	1	1	3	3	3	1	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_11	PF13414.6	gi|410672123|ref|YP_006924494.1|	-	0.01	15.5	3.2	4.4	7.1	0.0	4.3	4	1	1	5	5	5	0	TPR	repeat
SNAP	PF14938.6	gi|410672123|ref|YP_006924494.1|	-	0.019	14.4	0.0	3.9	6.8	0.0	2.4	1	1	0	2	2	2	0	Soluble	NSF	attachment	protein,	SNAP
TPR_6	PF13174.6	gi|410672123|ref|YP_006924494.1|	-	0.11	13.2	1.7	1.5e+02	3.3	0.0	4.3	4	0	0	4	4	4	0	Tetratricopeptide	repeat
RibD_C	PF01872.17	gi|410672124|ref|YP_006924495.1|	-	5.3e-26	91.7	0.0	1.5e-24	86.9	0.0	2.0	1	1	0	1	1	1	1	RibD	C-terminal	domain
DHFR_1	PF00186.19	gi|410672124|ref|YP_006924495.1|	-	9.5e-06	25.4	0.0	1.2e-05	25.1	0.0	1.2	1	0	0	1	1	1	1	Dihydrofolate	reductase
SBP_bac_11	PF13531.6	gi|410672124|ref|YP_006924495.1|	-	0.1	12.3	0.0	0.13	12.0	0.0	1.2	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
ATPase_2	PF01637.18	gi|410672125|ref|YP_006924496.1|	-	2.5e-07	30.9	0.0	2.7e-07	30.7	0.0	1.0	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_16	PF13191.6	gi|410672125|ref|YP_006924496.1|	-	0.00019	21.8	0.0	0.00021	21.7	0.0	1.0	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_14	PF13173.6	gi|410672125|ref|YP_006924496.1|	-	0.0069	16.4	0.6	0.012	15.7	0.4	1.5	1	1	0	1	1	1	1	AAA	domain
Roc	PF08477.13	gi|410672125|ref|YP_006924496.1|	-	0.16	12.2	0.1	1.5	9.0	0.1	1.9	1	1	1	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Pentapeptide	PF00805.22	gi|410672126|ref|YP_006924497.1|	-	8.7e-46	153.1	29.4	4.7e-12	45.3	2.9	6.1	2	2	3	6	6	6	6	Pentapeptide	repeats	(8	copies)
Pentapeptide_4	PF13599.6	gi|410672126|ref|YP_006924497.1|	-	1.4e-22	79.6	0.0	9.3e-09	35.3	0.0	3.6	1	1	2	3	3	3	3	Pentapeptide	repeats	(9	copies)
Pentapeptide_3	PF13576.6	gi|410672126|ref|YP_006924497.1|	-	4.8e-13	49.0	0.0	0.0029	17.7	0.0	4.8	1	1	2	4	4	4	4	Pentapeptide	repeats	(9	copies)
KAP_NTPase	PF07693.14	gi|410672126|ref|YP_006924497.1|	-	0.0017	17.6	0.2	0.0047	16.2	0.2	1.8	1	0	0	1	1	1	1	KAP	family	P-loop	domain
DDE_Tnp_IS1	PF03400.13	gi|410672127|ref|YP_006924498.1|	-	1.2e-08	35.4	0.1	1.3e-08	35.3	0.1	1.0	1	0	0	1	1	1	1	IS1	transposase
TERT_thumb	PF17984.1	gi|410672127|ref|YP_006924498.1|	-	0.022	14.6	0.1	0.022	14.6	0.1	1.1	1	0	0	1	1	1	0	Telomerase	reverse	transcriptase	thumb	DNA	binding	domain
EPO_TPO	PF00758.18	gi|410672127|ref|YP_006924498.1|	-	0.068	13.2	0.0	0.084	12.9	0.0	1.1	1	0	0	1	1	1	0	Erythropoietin/thrombopoietin
TraG-D_C	PF12696.7	gi|410672128|ref|YP_006924499.1|	-	0.11	12.5	0.0	4.6	7.2	0.0	2.0	2	0	0	2	2	2	0	TraM	recognition	site	of	TraD	and	TraG
Arginosuc_synth	PF00764.19	gi|410672129|ref|YP_006924500.1|	-	3.3e-176	586.3	0.1	3.8e-176	586.1	0.1	1.0	1	0	0	1	1	1	1	Arginosuccinate	synthase
NAD_synthase	PF02540.17	gi|410672129|ref|YP_006924500.1|	-	5.1e-05	22.5	0.0	7.7e-05	21.9	0.0	1.4	1	1	0	1	1	1	1	NAD	synthase
QueC	PF06508.13	gi|410672129|ref|YP_006924500.1|	-	0.00028	20.5	0.1	0.0016	18.0	0.0	2.0	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.16	gi|410672129|ref|YP_006924500.1|	-	0.0062	15.4	0.0	0.013	14.3	0.0	1.6	2	0	0	2	2	2	1	tRNA	methyl	transferase
CPSase_L_D2	PF02786.17	gi|410672130|ref|YP_006924501.1|	-	5.6e-107	356.0	0.4	6.3e-72	241.5	0.0	2.3	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_D3	PF02787.19	gi|410672130|ref|YP_006924501.1|	-	1.8e-40	138.1	0.1	4.2e-40	136.9	0.1	1.7	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
MGS	PF02142.22	gi|410672130|ref|YP_006924501.1|	-	9.8e-23	80.2	0.5	5.5e-21	74.6	0.1	3.9	4	0	0	4	4	4	1	MGS-like	domain
ATP-grasp	PF02222.22	gi|410672130|ref|YP_006924501.1|	-	2.9e-16	59.5	0.0	2.1e-07	30.7	0.0	2.3	2	0	0	2	2	2	2	ATP-grasp	domain
ATPgrasp_Ter	PF15632.6	gi|410672130|ref|YP_006924501.1|	-	3.6e-16	59.1	0.0	9.1e-07	28.7	0.0	3.0	2	1	0	2	2	2	2	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
Dala_Dala_lig_C	PF07478.13	gi|410672130|ref|YP_006924501.1|	-	3.5e-15	56.1	0.0	8.9e-07	28.6	0.0	2.5	2	0	0	2	2	2	2	D-ala	D-ala	ligase	C-terminus
ATP-grasp_3	PF02655.14	gi|410672130|ref|YP_006924501.1|	-	4.1e-13	49.7	0.1	1.2e-05	25.4	0.0	2.5	2	0	0	2	2	2	2	ATP-grasp	domain
GARS_A	PF01071.19	gi|410672130|ref|YP_006924501.1|	-	2.6e-07	30.6	0.0	0.016	15.0	0.0	2.5	2	0	0	2	2	2	2	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
RimK	PF08443.11	gi|410672130|ref|YP_006924501.1|	-	1.6e-06	27.8	0.1	0.0072	15.9	0.1	3.6	5	0	0	5	5	5	2	RimK-like	ATP-grasp	domain
ATP-grasp_5	PF13549.6	gi|410672130|ref|YP_006924501.1|	-	5e-05	22.9	0.0	0.01	15.3	0.0	2.9	2	1	0	2	2	2	1	ATP-grasp	domain
ATP-grasp_2	PF08442.10	gi|410672130|ref|YP_006924501.1|	-	0.017	14.7	0.0	6.5	6.3	0.0	3.0	3	0	0	3	3	3	0	ATP-grasp	domain
Epimerase	PF01370.21	gi|410672130|ref|YP_006924501.1|	-	0.058	12.8	0.0	0.25	10.8	0.0	1.9	1	1	1	2	2	2	0	NAD	dependent	epimerase/dehydratase	family
CPSase_sm_chain	PF00988.22	gi|410672131|ref|YP_006924502.1|	-	1.9e-44	150.6	0.0	2.9e-44	150.0	0.0	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
GATase	PF00117.28	gi|410672131|ref|YP_006924502.1|	-	1.3e-41	142.5	0.0	1.8e-41	142.0	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|410672131|ref|YP_006924502.1|	-	7.7e-08	32.4	1.1	0.0002	21.2	0.2	2.2	1	1	0	2	2	2	2	Peptidase	C26
PD40	PF07676.12	gi|410672132|ref|YP_006924503.1|	-	9.2e-44	146.6	16.3	2e-09	37.2	0.2	6.3	5	1	1	6	6	6	6	WD40-like	Beta	Propeller	Repeat
DPPIV_N	PF00930.21	gi|410672132|ref|YP_006924503.1|	-	1.4e-17	63.5	1.6	1.5e-07	30.5	0.1	4.4	1	1	2	4	4	4	4	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
DUF5050	PF16472.5	gi|410672132|ref|YP_006924503.1|	-	5.3e-09	35.7	0.2	1.1e-08	34.7	0.2	1.6	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF5050)
Pectate_lyase22	PF14583.6	gi|410672132|ref|YP_006924503.1|	-	1.6e-07	30.3	0.4	0.086	11.5	0.0	3.9	1	1	1	4	4	4	3	Oligogalacturonate	lyase
Gmad1	PF10647.9	gi|410672132|ref|YP_006924503.1|	-	5.8e-07	29.5	0.0	0.019	14.7	0.1	3.7	2	1	2	4	4	4	2	Lipoprotein	LpqB	beta-propeller	domain
Peptidase_S9_N	PF02897.15	gi|410672132|ref|YP_006924503.1|	-	0.0092	14.8	1.1	0.16	10.7	0.2	2.5	1	1	1	2	2	2	1	Prolyl	oligopeptidase,	N-terminal	beta-propeller	domain
ANAPC4_WD40	PF12894.7	gi|410672132|ref|YP_006924503.1|	-	0.021	15.1	0.0	3.9	7.9	0.0	3.1	3	0	0	3	3	3	0	Anaphase-promoting	complex	subunit	4	WD40	domain
DUF3748	PF12566.8	gi|410672132|ref|YP_006924503.1|	-	0.046	13.7	0.1	14	5.6	0.0	3.6	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF3748)
KNTase_C	PF07827.11	gi|410672132|ref|YP_006924503.1|	-	0.1	12.4	0.0	0.19	11.5	0.0	1.3	1	0	0	1	1	1	0	KNTase	C-terminal	domain
DUF2841	PF11001.8	gi|410672132|ref|YP_006924503.1|	-	0.1	12.6	0.0	0.49	10.5	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2841)
GatB_N	PF02934.15	gi|410672133|ref|YP_006924504.1|	-	8.4e-65	218.9	0.0	1.5e-64	218.1	0.0	1.4	2	0	0	2	2	2	1	GatB/GatE	catalytic	domain
GAD	PF02938.14	gi|410672133|ref|YP_006924504.1|	-	6.7e-16	58.3	0.0	1.5e-15	57.2	0.0	1.6	1	0	0	1	1	1	1	GAD	domain
GatB_Yqey	PF02637.18	gi|410672133|ref|YP_006924504.1|	-	2.7e-14	53.3	0.0	4.6e-14	52.5	0.0	1.3	1	0	0	1	1	1	1	GatB	domain
YqeY	PF09424.10	gi|410672133|ref|YP_006924504.1|	-	0.0011	19.0	0.1	0.0022	18.0	0.1	1.5	1	0	0	1	1	1	1	Yqey-like	protein
Fer4_10	PF13237.6	gi|410672134|ref|YP_006924505.1|	-	1.7e-10	40.8	3.5	4.9e-05	23.4	0.6	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|410672134|ref|YP_006924505.1|	-	3.1e-09	37.1	7.7	5.7e-09	36.3	7.7	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410672134|ref|YP_006924505.1|	-	1.1e-07	32.3	25.1	1.2e-06	29.0	12.3	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|410672134|ref|YP_006924505.1|	-	2e-06	28.3	12.2	4.8e-06	27.1	12.2	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410672134|ref|YP_006924505.1|	-	8.3e-06	25.9	14.5	0.00011	22.3	15.6	2.0	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410672134|ref|YP_006924505.1|	-	1.7e-05	24.9	14.9	0.00061	20.1	3.0	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|410672134|ref|YP_006924505.1|	-	0.00012	21.8	12.8	0.0054	16.5	2.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|410672134|ref|YP_006924505.1|	-	0.00032	20.6	12.2	0.0063	16.5	1.7	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|410672134|ref|YP_006924505.1|	-	0.00054	19.9	15.7	0.019	15.0	3.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|410672134|ref|YP_006924505.1|	-	0.0042	17.8	3.9	0.85	10.4	0.2	2.5	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.6	gi|410672134|ref|YP_006924505.1|	-	0.0071	17.2	16.5	0.12	13.3	16.9	2.2	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.6	gi|410672134|ref|YP_006924505.1|	-	0.024	14.8	7.9	0.32	11.2	1.1	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|410672134|ref|YP_006924505.1|	-	0.077	13.5	7.1	0.29	11.7	0.8	2.3	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_20	PF14691.6	gi|410672134|ref|YP_006924505.1|	-	0.099	12.4	9.4	1.5	8.6	0.4	2.2	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_21	PF14697.6	gi|410672134|ref|YP_006924505.1|	-	0.14	12.3	12.9	1.5	9.0	12.9	2.1	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|410672134|ref|YP_006924505.1|	-	0.33	12.0	19.4	3.2	8.9	5.0	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|410672134|ref|YP_006924505.1|	-	1.4	9.8	12.7	4.4	8.2	4.3	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|410672135|ref|YP_006924506.1|	-	4.1e-35	119.9	0.4	1.5e-17	63.5	0.4	2.4	2	0	0	2	2	2	2	Cysteine-rich	domain
zinc_ribbon_9	PF14369.6	gi|410672135|ref|YP_006924506.1|	-	0.25	11.6	1.9	23	5.3	0.0	2.7	2	0	0	2	2	2	0	zinc-ribbon
Fer4	PF00037.27	gi|410672136|ref|YP_006924507.1|	-	5.4e-23	79.8	38.6	1.2e-07	31.2	4.3	4.7	4	0	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|410672136|ref|YP_006924507.1|	-	9.8e-18	63.4	34.8	1.5e-05	24.9	3.9	4.8	4	0	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|410672136|ref|YP_006924507.1|	-	3.9e-15	55.8	23.5	1.9e-07	31.1	8.2	3.6	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|410672136|ref|YP_006924507.1|	-	2.1e-13	50.6	34.9	3.1e-06	27.7	12.2	4.9	3	2	4	7	7	6	6	4Fe-4S	dicluster	domain
Pyr_redox_2	PF07992.14	gi|410672136|ref|YP_006924507.1|	-	6.8e-13	48.5	0.0	1.3e-08	34.5	0.0	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Fer4_16	PF13484.6	gi|410672136|ref|YP_006924507.1|	-	1.5e-12	48.2	21.5	0.0012	19.7	0.9	4.8	4	0	0	4	4	4	4	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|410672136|ref|YP_006924507.1|	-	3.3e-12	45.7	41.8	0.00043	20.2	3.1	5.2	5	0	0	5	5	4	4	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|410672136|ref|YP_006924507.1|	-	3.6e-12	46.2	29.4	0.00075	19.6	13.0	5.2	4	1	1	5	5	5	4	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410672136|ref|YP_006924507.1|	-	5.6e-12	45.6	34.5	1.8e-05	24.8	11.9	4.9	4	1	2	6	6	6	5	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410672136|ref|YP_006924507.1|	-	9e-10	39.0	24.5	0.0064	17.0	0.9	5.1	5	0	0	5	5	4	4	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410672136|ref|YP_006924507.1|	-	2e-08	34.1	31.8	0.03	14.8	1.5	5.0	4	0	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|410672136|ref|YP_006924507.1|	-	2.7e-08	34.5	18.5	0.082	13.8	0.7	5.0	4	0	0	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|410672136|ref|YP_006924507.1|	-	9.9e-08	32.3	26.1	0.03	14.8	1.1	4.9	3	1	1	4	4	4	3	4Fe-4S	dicluster	domain
FAD_oxidored	PF12831.7	gi|410672136|ref|YP_006924507.1|	-	2.6e-07	30.3	0.0	4.2e-07	29.7	0.0	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|410672136|ref|YP_006924507.1|	-	5.9e-07	28.9	0.3	8.8e-07	28.3	0.3	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox	PF00070.27	gi|410672136|ref|YP_006924507.1|	-	1e-06	29.2	0.9	8.9e-05	23.0	0.5	3.4	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|410672136|ref|YP_006924507.1|	-	1.3e-06	28.6	0.2	4.7e-06	26.7	0.0	2.1	2	0	0	2	2	1	1	NAD(P)-binding	Rossmann-like	domain
GIDA	PF01134.22	gi|410672136|ref|YP_006924507.1|	-	5.1e-06	25.8	0.1	1.5e-05	24.3	0.0	1.8	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Fer4_15	PF13459.6	gi|410672136|ref|YP_006924507.1|	-	6.8e-06	26.7	27.2	0.084	13.6	2.6	4.7	3	1	1	4	4	4	3	4Fe-4S	single	cluster	domain
HI0933_like	PF03486.14	gi|410672136|ref|YP_006924507.1|	-	8.6e-06	24.7	1.1	1.7e-05	23.8	1.0	1.6	1	1	0	1	1	1	1	HI0933-like	protein
AlaDh_PNT_C	PF01262.21	gi|410672136|ref|YP_006924507.1|	-	1.1e-05	24.9	0.2	3.6e-05	23.2	0.0	1.9	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
DAO	PF01266.24	gi|410672136|ref|YP_006924507.1|	-	9.7e-05	22.1	0.1	0.0057	16.3	0.1	2.4	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|410672136|ref|YP_006924507.1|	-	0.0039	16.5	0.0	0.0085	15.4	0.0	1.5	1	0	0	1	1	1	1	Thi4	family
Fer4_13	PF13370.6	gi|410672136|ref|YP_006924507.1|	-	0.0083	16.6	33.2	0.29	11.7	2.8	4.6	4	0	0	4	4	4	3	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Pyr_redox_3	PF13738.6	gi|410672136|ref|YP_006924507.1|	-	0.012	14.9	0.0	0.027	13.7	0.0	1.5	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|410672136|ref|YP_006924507.1|	-	0.11	12.4	0.2	0.2	11.5	0.2	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_3	PF01494.19	gi|410672136|ref|YP_006924507.1|	-	0.18	11.0	0.1	0.29	10.3	0.1	1.2	1	0	0	1	1	1	0	FAD	binding	domain
Fer4_18	PF13746.6	gi|410672136|ref|YP_006924507.1|	-	0.37	11.0	28.5	4.5	7.5	8.2	4.0	2	2	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|410672136|ref|YP_006924507.1|	-	4.1	8.6	56.8	0.63	11.1	7.9	5.4	5	0	0	5	5	4	0	4Fe-4S	binding	domain
FlpD	PF02662.16	gi|410672137|ref|YP_006924508.1|	-	9.1e-07	28.9	0.0	1e-06	28.8	0.0	1.1	1	0	0	1	1	1	1	Methyl-viologen-reducing	hydrogenase,	delta	subunit
FlpD	PF02662.16	gi|410672138|ref|YP_006924509.1|	-	2.1e-29	102.0	0.0	2.4e-29	101.8	0.0	1.0	1	0	0	1	1	1	1	Methyl-viologen-reducing	hydrogenase,	delta	subunit
FrhB_FdhB_C	PF04432.13	gi|410672139|ref|YP_006924510.1|	-	9.1e-34	116.5	1.1	1.3e-33	116.0	0.1	1.7	1	1	1	2	2	2	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	C	terminus
FrhB_FdhB_N	PF04422.13	gi|410672139|ref|YP_006924510.1|	-	1.5e-17	63.5	0.1	3.2e-17	62.4	0.1	1.5	1	0	0	1	1	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	N-term
Fer4	PF00037.27	gi|410672139|ref|YP_006924510.1|	-	6.2e-09	35.3	21.2	3.1e-06	26.8	3.3	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|410672139|ref|YP_006924510.1|	-	1.1e-07	31.8	13.4	0.00013	22.0	0.2	3.2	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410672139|ref|YP_006924510.1|	-	3.7e-07	29.8	16.3	0.00039	20.4	1.5	3.5	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|410672139|ref|YP_006924510.1|	-	2.3e-06	28.0	14.7	2.3e-06	28.0	14.7	2.2	2	1	1	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410672139|ref|YP_006924510.1|	-	3.9e-06	26.9	16.8	2e-05	24.6	15.4	2.7	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|410672139|ref|YP_006924510.1|	-	4.5e-06	27.1	14.8	4.5e-06	27.1	14.8	2.0	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|410672139|ref|YP_006924510.1|	-	8e-06	26.3	18.9	5.8e-05	23.6	16.7	3.0	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410672139|ref|YP_006924510.1|	-	0.0001	22.4	22.1	0.0025	17.9	5.9	3.2	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|410672139|ref|YP_006924510.1|	-	0.00013	22.6	19.6	0.0045	17.8	4.0	3.0	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|410672139|ref|YP_006924510.1|	-	0.00028	21.8	17.7	0.00064	20.6	14.5	2.7	2	1	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.7	gi|410672139|ref|YP_006924510.1|	-	0.00046	20.5	1.9	0.00046	20.5	1.9	3.2	3	1	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|410672139|ref|YP_006924510.1|	-	0.00097	19.3	17.0	0.089	13.0	2.7	3.2	2	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410672139|ref|YP_006924510.1|	-	0.00097	19.1	3.6	0.00097	19.1	3.6	2.9	3	0	0	3	3	2	1	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|410672139|ref|YP_006924510.1|	-	0.023	15.5	1.4	0.023	15.5	1.4	2.7	2	1	1	3	3	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|410672139|ref|YP_006924510.1|	-	0.16	12.6	18.6	1	10.0	3.2	3.1	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Molybdop_Fe4S4	PF04879.16	gi|410672140|ref|YP_006924511.1|	-	4.5e-07	29.8	0.1	9.3e-07	28.7	0.1	1.5	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Molybdopterin	PF00384.22	gi|410672140|ref|YP_006924511.1|	-	2.1e-06	27.0	0.0	0.017	14.1	0.0	2.2	2	0	0	2	2	2	2	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|410672140|ref|YP_006924511.1|	-	0.00037	20.5	0.0	0.00085	19.3	0.0	1.6	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Linker_histone	PF00538.19	gi|410672141|ref|YP_006924512.1|	-	0.006	16.9	0.1	0.0072	16.7	0.1	1.1	1	0	0	1	1	1	1	linker	histone	H1	and	H5	family
Rhodanese	PF00581.20	gi|410672142|ref|YP_006924513.1|	-	1.2e-37	128.7	1.1	7.7e-13	48.9	0.0	3.7	3	1	0	3	3	3	3	Rhodanese-like	domain
Methyltransf_33	PF10017.9	gi|410672143|ref|YP_006924514.1|	-	2.6e-101	338.8	0.0	3e-101	338.6	0.0	1.0	1	0	0	1	1	1	1	Histidine-specific	methyltransferase,	SAM-dependent
Aminotran_5	PF00266.19	gi|410672144|ref|YP_006924515.1|	-	9.5e-130	432.8	0.1	1.1e-129	432.7	0.1	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.21	gi|410672144|ref|YP_006924515.1|	-	5.8e-11	42.2	0.0	9.4e-11	41.5	0.0	1.3	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|410672144|ref|YP_006924515.1|	-	3.8e-08	33.1	0.2	6.2e-08	32.3	0.2	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|410672144|ref|YP_006924515.1|	-	2e-05	24.0	0.1	2.3e-05	23.9	0.1	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
SepSecS	PF05889.13	gi|410672144|ref|YP_006924515.1|	-	3.1e-05	22.9	0.3	6.9e-05	21.7	0.3	1.6	1	1	0	1	1	1	1	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
Cys_Met_Meta_PP	PF01053.20	gi|410672144|ref|YP_006924515.1|	-	0.0029	16.2	0.1	0.0052	15.4	0.1	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Pyridoxal_deC	PF00282.19	gi|410672144|ref|YP_006924515.1|	-	0.089	11.5	0.1	0.14	10.9	0.1	1.3	1	0	0	1	1	1	0	Pyridoxal-dependent	decarboxylase	conserved	domain
SufE	PF02657.15	gi|410672145|ref|YP_006924516.1|	-	2.8e-39	133.8	0.0	3.1e-39	133.6	0.0	1.0	1	0	0	1	1	1	1	Fe-S	metabolism	associated	domain
Fer4	PF00037.27	gi|410672146|ref|YP_006924517.1|	-	2.9e-37	125.0	71.8	9.2e-08	31.6	1.5	8.3	8	0	0	8	8	8	7	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|410672146|ref|YP_006924517.1|	-	1.5e-33	115.2	56.3	2.6e-11	43.9	6.0	4.5	4	0	0	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|410672146|ref|YP_006924517.1|	-	1.9e-26	91.9	60.4	1.6e-05	24.9	10.9	6.9	4	3	3	7	7	7	7	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410672146|ref|YP_006924517.1|	-	3.3e-24	84.8	57.1	1.5e-06	28.2	8.8	5.6	2	2	6	8	8	8	8	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410672146|ref|YP_006924517.1|	-	1.4e-22	80.4	52.1	0.00053	20.9	8.6	7.3	6	1	1	7	7	7	5	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|410672146|ref|YP_006924517.1|	-	2.1e-22	79.0	59.5	1.4e-06	28.4	8.3	6.3	4	3	4	8	8	8	8	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410672146|ref|YP_006924517.1|	-	3.1e-18	65.0	77.0	5.7e-05	23.0	2.2	8.2	8	0	0	8	8	8	8	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|410672146|ref|YP_006924517.1|	-	3.2e-16	59.5	46.6	0.0015	18.9	7.6	6.0	5	2	0	5	5	5	4	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|410672146|ref|YP_006924517.1|	-	4.4e-15	54.8	70.5	7.7e-05	22.6	1.1	8.3	8	0	0	8	8	8	6	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|410672146|ref|YP_006924517.1|	-	1.5e-07	32.0	57.6	0.041	14.6	0.5	8.2	7	1	0	7	7	7	4	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.6	gi|410672146|ref|YP_006924517.1|	-	2.8e-07	31.0	65.7	0.1	13.2	11.1	7.5	2	2	6	8	8	8	4	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|410672146|ref|YP_006924517.1|	-	8.6e-07	29.4	70.9	0.14	12.7	1.3	8.3	7	1	1	8	8	8	5	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_4	PF12800.7	gi|410672146|ref|YP_006924517.1|	-	0.00088	19.6	74.4	0.0067	16.9	3.0	8.3	8	0	0	8	8	8	4	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|410672146|ref|YP_006924517.1|	-	0.0017	19.2	91.2	0.027	15.4	4.8	8.3	8	0	0	8	8	8	4	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|410672146|ref|YP_006924517.1|	-	0.067	14.0	0.8	0.067	14.0	0.8	7.9	4	2	4	10	10	10	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|410672146|ref|YP_006924517.1|	-	0.068	13.4	53.0	0.043	14.0	5.8	7.1	4	2	2	7	7	7	0	4Fe-4S	dicluster	domain
FlpD	PF02662.16	gi|410672147|ref|YP_006924518.1|	-	3.3e-53	178.9	4.4	8.1e-50	167.9	0.1	4.6	4	1	0	4	4	4	1	Methyl-viologen-reducing	hydrogenase,	delta	subunit
Pyr_redox_2	PF07992.14	gi|410672147|ref|YP_006924518.1|	-	8.2e-18	64.6	0.0	1.9e-17	63.5	0.0	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Fer4_7	PF12838.7	gi|410672147|ref|YP_006924518.1|	-	5e-14	52.6	35.0	0.00025	21.6	0.5	5.5	5	1	1	6	6	6	4	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|410672147|ref|YP_006924518.1|	-	4.3e-13	48.5	54.8	4.3e-07	29.5	4.0	5.8	6	1	0	6	6	4	3	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|410672147|ref|YP_006924518.1|	-	3e-11	43.3	35.8	1.1e-05	25.4	0.1	4.7	4	1	1	5	5	4	4	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|410672147|ref|YP_006924518.1|	-	7.1e-11	42.9	25.3	0.0028	18.5	0.1	5.0	5	0	0	5	5	4	3	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|410672147|ref|YP_006924518.1|	-	1.5e-10	40.5	44.0	0.00023	21.1	2.4	6.0	6	0	0	6	6	6	4	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|410672147|ref|YP_006924518.1|	-	2.3e-09	36.9	49.7	0.00057	19.9	3.4	5.5	6	0	0	6	6	4	4	4Fe-4S	binding	domain
FAD_oxidored	PF12831.7	gi|410672147|ref|YP_006924518.1|	-	1.4e-08	34.6	0.2	2.2e-08	33.9	0.2	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Fer4_21	PF14697.6	gi|410672147|ref|YP_006924518.1|	-	2e-08	34.2	54.4	4.3e-07	30.0	12.7	6.0	5	1	1	6	6	6	3	4Fe-4S	dicluster	domain
FAD_binding_2	PF00890.24	gi|410672147|ref|YP_006924518.1|	-	3.4e-08	33.0	1.0	5.4e-08	32.3	1.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_8	PF13183.6	gi|410672147|ref|YP_006924518.1|	-	4.5e-07	30.2	26.0	0.0077	16.7	0.3	5.1	4	2	0	4	4	4	3	4Fe-4S	dicluster	domain
DAO	PF01266.24	gi|410672147|ref|YP_006924518.1|	-	7.7e-07	29.0	1.4	0.00035	20.3	1.3	2.9	2	1	1	3	3	3	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|410672147|ref|YP_006924518.1|	-	9.7e-07	28.2	0.6	2.3e-06	26.9	0.2	1.8	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Pyr_redox	PF00070.27	gi|410672147|ref|YP_006924518.1|	-	5.5e-06	26.8	1.7	8.3e-05	23.1	0.7	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|410672147|ref|YP_006924518.1|	-	7.7e-06	26.0	0.0	1.7e-05	25.0	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Fer4_9	PF13187.6	gi|410672147|ref|YP_006924518.1|	-	9.2e-06	25.7	20.4	2.9e-05	24.1	10.3	5.0	3	2	3	6	6	5	4	4Fe-4S	dicluster	domain
HI0933_like	PF03486.14	gi|410672147|ref|YP_006924518.1|	-	2e-05	23.5	0.8	3.3e-05	22.8	0.8	1.3	1	0	0	1	1	1	1	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|410672147|ref|YP_006924518.1|	-	4.9e-05	22.7	0.1	0.00039	19.8	0.0	2.3	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Fer4_4	PF12800.7	gi|410672147|ref|YP_006924518.1|	-	8.2e-05	22.8	34.2	0.07	13.7	2.2	5.4	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Thi4	PF01946.17	gi|410672147|ref|YP_006924518.1|	-	0.00043	19.6	0.1	0.0012	18.1	0.1	1.7	1	0	0	1	1	1	1	Thi4	family
FAD_binding_3	PF01494.19	gi|410672147|ref|YP_006924518.1|	-	0.00067	19.0	0.8	0.0012	18.1	0.8	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.6	gi|410672147|ref|YP_006924518.1|	-	0.001	19.6	36.8	0.045	14.3	4.4	4.9	4	1	1	5	5	4	2	4Fe-4S	dicluster	domain
AlaDh_PNT_C	PF01262.21	gi|410672147|ref|YP_006924518.1|	-	0.0013	18.0	0.1	0.0028	17.0	0.1	1.5	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
K_oxygenase	PF13434.6	gi|410672147|ref|YP_006924518.1|	-	0.003	16.7	0.3	0.3	10.2	0.0	3.0	3	0	0	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
Fer4_22	PF17179.4	gi|410672147|ref|YP_006924518.1|	-	0.0036	18.1	31.1	0.062	14.1	0.4	5.0	4	1	1	5	5	4	3	4Fe-4S	dicluster	domain
SCIFF	PF13165.6	gi|410672147|ref|YP_006924518.1|	-	0.0097	15.8	1.3	0.0097	15.8	1.3	4.0	4	0	0	4	4	3	1	Six-cysteine	peptide	SCIFF
NAD_binding_7	PF13241.6	gi|410672147|ref|YP_006924518.1|	-	0.024	15.0	0.4	0.15	12.5	0.1	2.5	2	1	0	2	2	2	0	Putative	NAD(P)-binding
Lycopene_cycl	PF05834.12	gi|410672147|ref|YP_006924518.1|	-	0.03	13.4	0.6	0.072	12.1	0.6	1.6	1	0	0	1	1	1	0	Lycopene	cyclase	protein
Amino_oxidase	PF01593.24	gi|410672147|ref|YP_006924518.1|	-	0.19	11.0	0.0	0.49	9.6	0.0	1.7	1	0	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
NAD_binding_9	PF13454.6	gi|410672147|ref|YP_006924518.1|	-	0.2	11.6	0.2	25	4.8	0.3	2.7	3	0	0	3	3	2	0	FAD-NAD(P)-binding
Fer4_15	PF13459.6	gi|410672147|ref|YP_006924518.1|	-	0.89	10.3	28.1	0.47	11.2	0.9	4.8	3	1	1	4	4	4	0	4Fe-4S	single	cluster	domain
Prismane	PF03063.20	gi|410672148|ref|YP_006924519.1|	-	2.1e-05	23.4	1.1	2.1e-05	23.4	1.1	1.0	1	0	0	1	1	1	1	Prismane/CO	dehydrogenase	family
Prismane	PF03063.20	gi|410672149|ref|YP_006924520.1|	-	2.8e-169	564.1	0.0	3.4e-169	563.8	0.0	1.0	1	0	0	1	1	1	1	Prismane/CO	dehydrogenase	family
Cupin_2	PF07883.11	gi|410672150|ref|YP_006924521.1|	-	1.1e-15	57.1	0.0	1.5e-15	56.6	0.0	1.2	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|410672150|ref|YP_006924521.1|	-	0.00082	19.3	0.0	0.00096	19.1	0.0	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Pirin_C	PF05726.13	gi|410672150|ref|YP_006924521.1|	-	0.0071	16.7	0.0	0.0094	16.3	0.0	1.1	1	0	0	1	1	1	1	Pirin	C-terminal	cupin	domain
Intein_splicing	PF14890.6	gi|410672150|ref|YP_006924521.1|	-	0.043	13.7	0.1	0.045	13.7	0.1	1.1	1	0	0	1	1	1	0	Intein	splicing	domain
DUF4601	PF15373.6	gi|410672150|ref|YP_006924521.1|	-	0.1	11.6	0.0	0.1	11.6	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4601)
DUF4585	PF15232.6	gi|410672150|ref|YP_006924521.1|	-	0.1	12.7	0.0	0.9	9.6	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4585)
FeThRed_B	PF02943.15	gi|410672151|ref|YP_006924522.1|	-	3.3e-28	97.8	1.3	3.6e-28	97.7	1.3	1.0	1	0	0	1	1	1	1	Ferredoxin	thioredoxin	reductase	catalytic	beta	chain
FeS	PF04060.13	gi|410672152|ref|YP_006924523.1|	-	1.5e-13	50.1	1.2	1.5e-13	50.1	1.2	2.6	3	0	0	3	3	2	1	Putative	Fe-S	cluster
Fer4	PF00037.27	gi|410672152|ref|YP_006924523.1|	-	3.1e-08	33.1	22.3	6.5e-08	32.1	5.4	3.3	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|410672152|ref|YP_006924523.1|	-	5.5e-07	29.6	11.1	5.5e-07	29.6	11.1	2.7	2	2	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|410672152|ref|YP_006924523.1|	-	1.9e-06	28.4	33.3	0.00013	22.4	14.1	3.0	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|410672152|ref|YP_006924523.1|	-	4.6e-06	26.5	4.8	4.6e-06	26.5	4.8	3.5	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|410672152|ref|YP_006924523.1|	-	2.6e-05	24.1	17.4	3.8e-05	23.5	3.1	3.6	3	0	0	3	3	3	1	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|410672152|ref|YP_006924523.1|	-	5.5e-05	23.6	8.9	7.4e-05	23.2	2.8	2.6	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|410672152|ref|YP_006924523.1|	-	9.6e-05	22.5	30.3	0.00093	19.3	12.6	3.1	1	1	2	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|410672152|ref|YP_006924523.1|	-	0.00012	22.1	1.5	0.00012	22.1	1.5	3.1	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|410672152|ref|YP_006924523.1|	-	0.0004	20.7	2.3	0.0004	20.7	2.3	3.7	3	1	0	3	3	3	1	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|410672152|ref|YP_006924523.1|	-	0.0008	20.3	18.4	0.004	18.0	13.1	3.1	2	1	1	3	3	3	2	4Fe-4S	double	cluster	binding	domain
YhfH	PF14149.6	gi|410672152|ref|YP_006924523.1|	-	0.0017	18.3	0.9	0.0017	18.3	0.9	2.4	2	0	0	2	2	2	1	YhfH-like	protein
Fer4_8	PF13183.6	gi|410672152|ref|YP_006924523.1|	-	0.0018	18.7	27.3	0.01	16.3	8.2	2.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|410672152|ref|YP_006924523.1|	-	0.0039	18.0	24.2	0.012	16.5	7.3	3.7	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|410672152|ref|YP_006924523.1|	-	0.016	16.0	0.3	0.016	16.0	0.3	3.0	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|410672152|ref|YP_006924523.1|	-	0.018	15.8	9.0	0.16	12.7	9.0	2.4	1	1	0	1	1	1	0	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.6	gi|410672152|ref|YP_006924523.1|	-	0.062	13.5	0.2	0.062	13.5	0.2	2.6	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|410672152|ref|YP_006924523.1|	-	0.092	13.3	16.5	0.41	11.2	11.3	3.0	2	1	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
TPP_enzyme_M	PF00205.22	gi|410672153|ref|YP_006924524.1|	-	4.3e-06	26.5	0.3	0.014	15.1	0.1	3.1	3	1	0	3	3	3	2	Thiamine	pyrophosphate	enzyme,	central	domain
Molydop_binding	PF01568.21	gi|410672154|ref|YP_006924525.1|	-	8.4e-11	41.9	0.0	1e-10	41.6	0.0	1.1	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
CDC48_N	PF02359.18	gi|410672154|ref|YP_006924525.1|	-	0.03	14.5	0.0	0.04	14.1	0.0	1.3	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
DUF818	PF05677.12	gi|410672155|ref|YP_006924526.1|	-	0.5	9.3	3.1	0.48	9.3	3.1	1.1	1	0	0	1	1	1	0	Chlamydia	CHLPS	protein	(DUF818)
TM2	PF05154.16	gi|410672155|ref|YP_006924526.1|	-	1.3	9.4	13.6	1.1e+02	3.3	13.6	2.3	1	1	0	1	1	1	0	TM2	domain
ChaB	PF06150.12	gi|410672156|ref|YP_006924527.1|	-	8.8e-29	99.9	3.0	1e-28	99.7	3.0	1.1	1	0	0	1	1	1	1	ChaB
YozE_SAM_like	PF06855.12	gi|410672156|ref|YP_006924527.1|	-	0.054	13.7	0.1	0.11	12.7	0.1	1.5	1	0	0	1	1	1	0	YozE	SAM-like	fold
PepSY	PF03413.19	gi|410672157|ref|YP_006924528.1|	-	0.024	15.2	1.1	0.36	11.4	1.1	2.3	1	1	0	1	1	1	0	Peptidase	propeptide	and	YPEB	domain
LPAM_1	PF08139.12	gi|410672157|ref|YP_006924528.1|	-	2.5	8.8	3.8	4.1	8.1	3.8	1.4	1	0	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
DUF4577	PF15145.6	gi|410672158|ref|YP_006924529.1|	-	0.0055	16.7	0.8	0.0056	16.7	0.8	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4577)
Phage_holin_3_6	PF07332.11	gi|410672158|ref|YP_006924529.1|	-	0.017	15.2	0.0	0.02	14.9	0.0	1.2	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Trimer_CC	PF08954.11	gi|410672158|ref|YP_006924529.1|	-	0.019	14.5	0.2	0.022	14.3	0.2	1.1	1	0	0	1	1	1	0	Trimerisation	motif
THOC7	PF05615.13	gi|410672158|ref|YP_006924529.1|	-	0.021	15.1	0.0	0.023	15.0	0.0	1.0	1	0	0	1	1	1	0	Tho	complex	subunit	7
DUF948	PF06103.11	gi|410672158|ref|YP_006924529.1|	-	0.024	14.9	0.2	0.031	14.5	0.2	1.2	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
TssO	PF17561.2	gi|410672158|ref|YP_006924529.1|	-	0.033	14.3	0.1	0.039	14.1	0.1	1.1	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssO
Pox_LP_H2	PF03356.15	gi|410672158|ref|YP_006924529.1|	-	0.049	13.5	0.2	0.056	13.3	0.2	1.0	1	0	0	1	1	1	0	Viral	late	protein	H2
ODV-E18	PF10717.9	gi|410672158|ref|YP_006924529.1|	-	0.053	13.4	0.4	0.067	13.1	0.4	1.2	1	0	0	1	1	1	0	Occlusion-derived	virus	envelope	protein	ODV-E18
DUF5305	PF17231.2	gi|410672158|ref|YP_006924529.1|	-	0.056	12.8	0.1	0.061	12.7	0.1	1.0	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5305)
DUF4083	PF13314.6	gi|410672158|ref|YP_006924529.1|	-	0.55	10.2	6.3	1.1	9.2	1.8	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4083)
HTH_5	PF01022.20	gi|410672159|ref|YP_006924530.1|	-	2.9e-13	49.4	0.4	6.8e-13	48.3	0.3	1.6	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|410672159|ref|YP_006924530.1|	-	3e-10	40.0	0.1	4.4e-10	39.5	0.1	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|410672159|ref|YP_006924530.1|	-	1.1e-06	28.4	0.0	1.4e-06	28.0	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|410672159|ref|YP_006924530.1|	-	9.5e-06	25.4	0.1	1.2e-05	25.1	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|410672159|ref|YP_006924530.1|	-	2.6e-05	24.1	0.2	4.1e-05	23.4	0.2	1.3	1	0	0	1	1	1	1	HTH	domain
MarR	PF01047.22	gi|410672159|ref|YP_006924530.1|	-	8.6e-05	22.4	0.0	0.00014	21.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|410672159|ref|YP_006924530.1|	-	9.3e-05	21.9	0.1	0.0002	20.9	0.0	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
PadR	PF03551.14	gi|410672159|ref|YP_006924530.1|	-	0.00022	21.1	0.1	0.0034	17.3	0.1	2.1	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_41	PF14502.6	gi|410672159|ref|YP_006924530.1|	-	0.0032	17.1	0.0	0.0051	16.5	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|410672159|ref|YP_006924530.1|	-	0.005	17.0	0.2	0.007	16.5	0.2	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_36	PF13730.6	gi|410672159|ref|YP_006924530.1|	-	0.011	15.7	0.0	0.017	15.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|410672159|ref|YP_006924530.1|	-	0.012	16.0	0.0	0.017	15.5	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|410672159|ref|YP_006924530.1|	-	0.013	15.6	0.1	0.021	15.0	0.1	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
LexA_DNA_bind	PF01726.16	gi|410672159|ref|YP_006924530.1|	-	0.037	13.8	0.0	0.058	13.2	0.0	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_29	PF13551.6	gi|410672159|ref|YP_006924530.1|	-	0.046	13.7	0.0	0.07	13.2	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_Crp_2	PF13545.6	gi|410672159|ref|YP_006924530.1|	-	0.052	13.5	0.0	0.068	13.1	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|410672159|ref|YP_006924530.1|	-	0.11	12.2	0.1	0.17	11.5	0.1	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_10	PF04967.12	gi|410672159|ref|YP_006924530.1|	-	0.12	12.2	0.0	0.18	11.6	0.0	1.3	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HxlR	PF01638.17	gi|410672159|ref|YP_006924530.1|	-	0.13	12.1	0.2	0.21	11.4	0.1	1.3	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
Methyltransf_11	PF08241.12	gi|410672160|ref|YP_006924531.1|	-	6.2e-22	78.1	0.0	7.1e-21	74.7	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|410672160|ref|YP_006924531.1|	-	1.6e-19	70.3	0.0	3.3e-18	66.2	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|410672160|ref|YP_006924531.1|	-	5.8e-18	65.3	0.0	8.5e-18	64.7	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|410672160|ref|YP_006924531.1|	-	3.6e-17	62.6	0.1	1.4e-16	60.7	0.0	1.7	1	1	1	2	2	2	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|410672160|ref|YP_006924531.1|	-	1.6e-16	60.3	0.0	2.7e-16	59.6	0.0	1.4	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|410672160|ref|YP_006924531.1|	-	4.4e-13	49.8	0.0	1.2e-12	48.5	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
MetW	PF07021.12	gi|410672160|ref|YP_006924531.1|	-	0.00021	20.9	0.0	0.0004	20.0	0.0	1.4	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
NodS	PF05401.11	gi|410672160|ref|YP_006924531.1|	-	0.0067	16.1	0.0	0.026	14.2	0.0	1.7	1	1	1	2	2	2	1	Nodulation	protein	S	(NodS)
PCMT	PF01135.19	gi|410672160|ref|YP_006924531.1|	-	0.16	11.7	0.0	0.7	9.6	0.0	1.8	1	1	1	2	2	2	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
CoA_binding_2	PF13380.6	gi|410672161|ref|YP_006924532.1|	-	0.0074	16.8	0.0	0.0087	16.5	0.0	1.1	1	0	0	1	1	1	1	CoA	binding	domain
YdjM	PF04307.14	gi|410672162|ref|YP_006924533.1|	-	1.2e-18	67.0	5.5	1.7e-18	66.5	5.5	1.2	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
HTH_45	PF14947.6	gi|410672164|ref|YP_006924535.1|	-	9.4e-07	28.7	0.1	1.3e-06	28.3	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF2201_N	PF13203.6	gi|410672164|ref|YP_006924535.1|	-	0.036	13.7	0.0	0.044	13.4	0.0	1.1	1	0	0	1	1	1	0	Putative	metallopeptidase	domain
HTH_20	PF12840.7	gi|410672164|ref|YP_006924535.1|	-	0.095	12.8	0.0	0.19	11.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
DDE_Tnp_IS1	PF03400.13	gi|410672166|ref|YP_006924537.1|	-	1.2e-08	35.4	0.1	1.3e-08	35.3	0.1	1.0	1	0	0	1	1	1	1	IS1	transposase
TERT_thumb	PF17984.1	gi|410672166|ref|YP_006924537.1|	-	0.022	14.6	0.1	0.022	14.6	0.1	1.1	1	0	0	1	1	1	0	Telomerase	reverse	transcriptase	thumb	DNA	binding	domain
EPO_TPO	PF00758.18	gi|410672166|ref|YP_006924537.1|	-	0.068	13.2	0.0	0.084	12.9	0.0	1.1	1	0	0	1	1	1	0	Erythropoietin/thrombopoietin
DDE_3	PF13358.6	gi|410672167|ref|YP_006924538.1|	-	2.2e-25	89.1	0.6	7.9e-25	87.3	0.1	2.0	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|410672167|ref|YP_006924538.1|	-	4.5e-10	40.0	0.0	1.3e-09	38.5	0.0	1.8	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_33	PF13592.6	gi|410672167|ref|YP_006924538.1|	-	3.3e-08	33.0	0.0	1.3e-07	31.1	0.0	2.0	2	0	0	2	2	2	1	Winged	helix-turn	helix
DDE_1	PF03184.19	gi|410672167|ref|YP_006924538.1|	-	3.1e-07	30.2	1.5	3.3e-07	30.1	0.2	1.8	2	1	0	2	2	2	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|410672167|ref|YP_006924538.1|	-	4.1e-05	23.7	0.0	7.7e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	Integrase	core	domain
HTH_ABP1_N	PF18107.1	gi|410672167|ref|YP_006924538.1|	-	0.0062	16.2	0.1	0.014	15.1	0.1	1.5	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
DDE_Tnp_ISAZ013	PF07592.11	gi|410672167|ref|YP_006924538.1|	-	0.017	14.2	0.4	0.04	12.9	0.1	1.7	2	0	0	2	2	2	0	Rhodopirellula	transposase	DDE	domain
HTH_29	PF13551.6	gi|410672167|ref|YP_006924538.1|	-	0.12	12.4	0.0	0.37	10.9	0.0	1.8	1	0	0	1	1	1	0	Winged	helix-turn	helix
DUF1724	PF08350.10	gi|410672168|ref|YP_006924539.1|	-	1.9e-21	76.0	0.1	4.3e-21	74.8	0.1	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
DUF3452	PF11934.8	gi|410672168|ref|YP_006924539.1|	-	0.056	13.0	0.1	0.089	12.4	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3452)
DUF2795	PF11387.8	gi|410672169|ref|YP_006924540.1|	-	5.7e-15	55.2	0.3	6.9e-15	55.0	0.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2795)
DUF1799	PF08809.11	gi|410672169|ref|YP_006924540.1|	-	0.16	12.1	0.0	0.2	11.9	0.0	1.1	1	0	0	1	1	1	0	Phage	related	hypothetical	protein	(DUF1799)
DDE_Tnp_1	PF01609.21	gi|410672171|ref|YP_006924542.1|	-	4.3e-09	36.3	5.9	1.2e-08	34.9	5.9	1.7	1	1	0	1	1	1	1	Transposase	DDE	domain
Methyltransf_31	PF13847.6	gi|410672171|ref|YP_006924542.1|	-	0.078	12.8	0.2	1.5	8.6	0.0	2.5	1	1	0	2	2	2	0	Methyltransferase	domain
Kelch_4	PF13418.6	gi|410672172|ref|YP_006924543.1|	-	0.0036	17.3	0.0	91	3.2	0.0	6.1	8	0	0	8	8	8	1	Galactose	oxidase,	central	domain
Lactamase_B	PF00753.27	gi|410672174|ref|YP_006924545.1|	-	1.5e-10	41.4	0.1	3.4e-10	40.3	0.1	1.5	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|410672174|ref|YP_006924545.1|	-	7.7e-05	22.3	0.1	0.00011	21.8	0.1	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
DUF498	PF04430.14	gi|410672174|ref|YP_006924545.1|	-	0.047	13.8	0.0	0.072	13.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF498/DUF598)
DUF3006	PF11213.8	gi|410672175|ref|YP_006924546.1|	-	1.4e-18	66.9	1.8	1.5e-18	66.8	1.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3006)
CHS5_N	PF16892.5	gi|410672175|ref|YP_006924546.1|	-	2.2e-05	24.3	0.1	2.9e-05	23.9	0.1	1.2	1	0	0	1	1	1	1	Chitin	biosynthesis	protein	CHS5	N-terminus
PAS_4	PF08448.10	gi|410672176|ref|YP_006924547.1|	-	4.8e-65	216.7	0.0	5.8e-17	61.9	0.0	7.8	7	1	0	7	7	7	7	PAS	fold
PAS_9	PF13426.7	gi|410672176|ref|YP_006924547.1|	-	3.8e-53	178.1	2.1	7.6e-09	35.8	0.0	8.1	8	0	0	8	8	8	6	PAS	domain
PAS_3	PF08447.12	gi|410672176|ref|YP_006924547.1|	-	2.3e-52	175.2	0.0	9.7e-23	80.3	0.0	6.7	6	0	0	6	6	6	3	PAS	fold
PAS	PF00989.25	gi|410672176|ref|YP_006924547.1|	-	1.6e-51	173.1	0.0	9.6e-13	48.1	0.0	7.7	7	0	0	7	7	7	6	PAS	fold
Response_reg	PF00072.24	gi|410672176|ref|YP_006924547.1|	-	4.6e-45	152.4	4.4	1.1e-26	93.2	0.5	3.4	3	0	0	3	3	3	2	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|410672176|ref|YP_006924547.1|	-	1.5e-32	112.4	0.2	3.7e-32	111.2	0.2	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_2	PF13185.6	gi|410672176|ref|YP_006924547.1|	-	1.7e-25	90.0	0.0	3.3e-23	82.5	0.0	2.8	2	0	0	2	2	2	1	GAF	domain
PAS_8	PF13188.7	gi|410672176|ref|YP_006924547.1|	-	8.6e-23	79.9	0.7	0.00012	21.9	0.0	6.4	7	0	0	7	7	6	5	PAS	domain
HisKA	PF00512.25	gi|410672176|ref|YP_006924547.1|	-	3e-21	75.2	0.9	2e-20	72.6	0.1	2.8	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
Hpt	PF01627.23	gi|410672176|ref|YP_006924547.1|	-	3.3e-11	43.3	0.0	1.6e-10	41.1	0.0	2.3	1	0	0	1	1	1	1	Hpt	domain
GAF	PF01590.26	gi|410672176|ref|YP_006924547.1|	-	0.0004	21.0	0.0	0.0086	16.7	0.0	2.6	2	0	0	2	2	2	1	GAF	domain
HATPase_c_3	PF13589.6	gi|410672176|ref|YP_006924547.1|	-	0.0037	17.1	0.0	0.0093	15.8	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF1722	PF08349.11	gi|410672176|ref|YP_006924547.1|	-	0.074	13.3	0.1	30	4.9	0.0	3.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1722)
DivIC	PF04977.15	gi|410672176|ref|YP_006924547.1|	-	0.13	12.0	0.8	1.2	9.0	0.0	2.9	2	0	0	2	2	2	0	Septum	formation	initiator
APG6_N	PF17675.1	gi|410672176|ref|YP_006924547.1|	-	0.28	11.7	5.5	8.9	6.9	0.0	3.5	2	0	0	2	2	2	0	Apg6	coiled-coil	region
PAS_3	PF08447.12	gi|410672177|ref|YP_006924548.1|	-	2.7e-94	309.6	7.3	4e-21	75.1	0.0	9.6	9	0	0	9	9	9	9	PAS	fold
PAS	PF00989.25	gi|410672177|ref|YP_006924548.1|	-	1e-80	267.1	0.3	4.4e-13	49.2	0.0	10.9	11	0	0	11	11	11	7	PAS	fold
PAS_9	PF13426.7	gi|410672177|ref|YP_006924548.1|	-	7.1e-75	247.9	8.5	2.1e-10	40.8	0.1	10.5	10	0	0	10	10	10	8	PAS	domain
PAS_4	PF08448.10	gi|410672177|ref|YP_006924548.1|	-	6e-72	238.9	0.0	1.5e-12	47.7	0.0	10.3	10	0	0	10	10	10	8	PAS	fold
PAS_8	PF13188.7	gi|410672177|ref|YP_006924548.1|	-	6.3e-38	128.2	0.0	3.3e-07	30.2	0.0	9.5	10	0	0	10	10	9	6	PAS	domain
HATPase_c	PF02518.26	gi|410672177|ref|YP_006924548.1|	-	5.8e-30	104.1	0.1	1.8e-29	102.5	0.1	1.9	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_2	PF13185.6	gi|410672177|ref|YP_006924548.1|	-	3.2e-17	63.1	0.0	2.3e-08	34.4	0.0	3.8	4	0	0	4	4	4	2	GAF	domain
HisKA	PF00512.25	gi|410672177|ref|YP_006924548.1|	-	1.4e-14	53.8	2.7	2.5e-14	53.0	0.0	3.0	4	0	0	4	4	2	1	His	Kinase	A	(phospho-acceptor)	domain
GAF	PF01590.26	gi|410672177|ref|YP_006924548.1|	-	1.1e-10	42.3	0.0	0.0006	20.5	0.0	3.5	4	0	0	4	4	3	2	GAF	domain
PAS_7	PF12860.7	gi|410672177|ref|YP_006924548.1|	-	1.3e-10	41.5	0.9	0.0062	16.7	0.0	6.0	5	1	0	5	5	4	2	PAS	fold
PAS_6	PF08348.11	gi|410672177|ref|YP_006924548.1|	-	6.4e-06	26.0	0.0	3.6	7.5	0.0	5.3	5	0	0	5	5	5	2	YheO-like	PAS	domain
GAF_3	PF13492.6	gi|410672177|ref|YP_006924548.1|	-	1.5e-05	25.4	0.0	0.0092	16.3	0.0	2.8	2	0	0	2	2	2	1	GAF	domain
HATPase_c_5	PF14501.6	gi|410672177|ref|YP_006924548.1|	-	4.6e-05	23.3	0.1	0.00033	20.5	0.0	2.5	3	0	0	3	3	2	1	GHKL	domain
dCache_1	PF02743.18	gi|410672177|ref|YP_006924548.1|	-	0.00016	21.5	0.3	2.1	8.1	0.1	4.1	4	0	0	4	4	3	2	Cache	domain
PAS_11	PF14598.6	gi|410672177|ref|YP_006924548.1|	-	0.00076	19.6	0.0	0.61	10.2	0.0	4.9	6	0	0	6	6	6	1	PAS	domain
PAS_10	PF13596.6	gi|410672177|ref|YP_006924548.1|	-	0.0051	17.4	0.7	6	7.5	0.0	5.6	5	1	0	5	5	4	1	PAS	domain
NOGCT	PF08155.11	gi|410672177|ref|YP_006924548.1|	-	0.0061	16.5	0.2	0.049	13.6	0.0	2.5	2	0	0	2	2	2	1	NOGCT	(NUC087)	domain
sCache_3_3	PF17202.4	gi|410672177|ref|YP_006924548.1|	-	0.0064	16.9	0.1	49	4.4	0.0	4.3	4	0	0	4	4	4	0	Single	cache	domain	3
HATPase_c_3	PF13589.6	gi|410672177|ref|YP_006924548.1|	-	0.035	13.9	0.0	0.08	12.8	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF4776	PF16003.5	gi|410672177|ref|YP_006924548.1|	-	0.26	10.2	0.3	0.43	9.5	0.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4776)
CheW	PF01584.19	gi|410672178|ref|YP_006924549.1|	-	3.5e-39	133.6	2.5	4.1e-39	133.4	2.5	1.0	1	0	0	1	1	1	1	CheW-like	domain
CheX	PF13690.6	gi|410672178|ref|YP_006924549.1|	-	0.02	15.0	0.1	0.031	14.4	0.1	1.3	1	0	0	1	1	1	0	Chemotaxis	phosphatase	CheX
MCPsignal	PF00015.21	gi|410672179|ref|YP_006924550.1|	-	4e-45	153.7	23.9	4e-45	153.7	23.9	8.0	7	2	2	10	10	10	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP_N3	PF18575.1	gi|410672179|ref|YP_006924550.1|	-	7.2e-27	92.7	0.2	3.6e-23	80.9	0.4	3.5	2	0	0	2	2	2	2	HAMP	N-terminal	domain	3
HAMP	PF00672.25	gi|410672179|ref|YP_006924550.1|	-	8.6e-14	51.7	0.1	0.002	18.5	0.0	9.3	7	2	1	8	8	8	2	HAMP	domain
HBM	PF16591.5	gi|410672179|ref|YP_006924550.1|	-	4.2e-07	29.7	15.3	3.8e-05	23.3	7.3	6.8	5	2	2	7	7	7	2	Helical	bimodular	sensor	domain
DUF948	PF06103.11	gi|410672179|ref|YP_006924550.1|	-	0.0027	17.9	54.4	0.1	12.9	4.1	10.9	10	4	2	12	12	10	3	Bacterial	protein	of	unknown	function	(DUF948)
DUF2610	PF11020.8	gi|410672179|ref|YP_006924550.1|	-	0.016	15.1	0.0	60	3.6	0.0	4.7	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF2610)
Med2	PF11214.8	gi|410672179|ref|YP_006924550.1|	-	0.037	14.2	7.0	8.3	6.6	0.0	6.9	7	1	1	8	8	7	0	Mediator	complex	subunit	2
MRP-S28	PF10213.9	gi|410672179|ref|YP_006924550.1|	-	0.18	12.2	13.8	5.7	7.4	0.1	5.4	5	1	0	5	5	5	0	Mitochondrial	ribosomal	subunit	protein
RPW8	PF05659.11	gi|410672179|ref|YP_006924550.1|	-	0.46	10.2	10.3	8.5	6.1	0.0	6.5	8	1	1	9	9	9	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Tetradecapep	PF08187.11	gi|410672179|ref|YP_006924550.1|	-	0.48	10.6	7.5	17	5.8	0.1	4.0	4	0	0	4	4	4	0	Myoactive	tetradecapeptides	family
DUF1664	PF07889.12	gi|410672179|ref|YP_006924550.1|	-	0.71	9.9	38.4	0.17	11.9	4.0	8.4	8	1	1	9	9	9	0	Protein	of	unknown	function	(DUF1664)
COG2	PF06148.11	gi|410672179|ref|YP_006924550.1|	-	2.1	8.4	31.4	4.6	7.3	2.2	8.1	8	1	0	9	9	9	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
APG6_N	PF17675.1	gi|410672179|ref|YP_006924550.1|	-	7	7.2	25.7	0.23	12.0	3.7	4.9	4	0	0	4	4	4	0	Apg6	coiled-coil	region
C1_1	PF00130.22	gi|410672181|ref|YP_006924552.1|	-	2.2e-05	24.2	4.4	0.00046	20.0	1.6	2.1	2	0	0	2	2	2	1	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-ribbon_3	PF13248.6	gi|410672181|ref|YP_006924552.1|	-	0.0013	18.1	6.6	1.2	8.6	0.0	3.2	3	0	0	3	3	3	2	zinc-ribbon	domain
DZR	PF12773.7	gi|410672181|ref|YP_006924552.1|	-	0.0028	17.6	6.7	0.11	12.5	6.9	2.1	1	1	0	1	1	1	1	Double	zinc	ribbon
Prok-RING_1	PF14446.6	gi|410672181|ref|YP_006924552.1|	-	0.0079	16.1	3.9	0.28	11.1	1.0	2.2	2	0	0	2	2	2	1	Prokaryotic	RING	finger	family	1
FAM150	PF15129.6	gi|410672181|ref|YP_006924552.1|	-	0.013	15.7	2.5	0.033	14.3	0.7	1.9	2	0	0	2	2	2	0	FAM150	family
DNA_RNApol_7kD	PF03604.13	gi|410672181|ref|YP_006924552.1|	-	0.028	14.1	5.1	0.13	12.0	1.9	2.2	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-AD	PF07776.15	gi|410672181|ref|YP_006924552.1|	-	0.031	14.5	5.4	1.7	8.9	0.2	2.3	1	1	0	2	2	2	0	Zinc-finger	associated	domain	(zf-AD)
TackOD1	PF18551.1	gi|410672181|ref|YP_006924552.1|	-	0.042	13.5	6.6	1.1	8.9	6.6	2.1	1	1	0	1	1	1	0	Thaumarchaeal	output	domain	1
Opiods_neuropep	PF01160.18	gi|410672181|ref|YP_006924552.1|	-	0.048	13.8	3.5	0.35	11.0	0.0	2.7	2	1	1	3	3	3	0	Vertebrate	endogenous	opioids	neuropeptide
zf-TFIIB	PF13453.6	gi|410672181|ref|YP_006924552.1|	-	0.055	12.8	4.6	2.5	7.5	3.3	2.6	2	1	0	2	2	2	0	Transcription	factor	zinc-finger
zinc-ribbons_6	PF07191.12	gi|410672181|ref|YP_006924552.1|	-	0.062	13.3	6.4	0.25	11.4	2.1	2.1	1	1	1	2	2	2	0	zinc-ribbons
Prim_Zn_Ribbon	PF08273.12	gi|410672181|ref|YP_006924552.1|	-	0.12	12.6	2.8	1.9	8.8	0.1	2.9	3	0	0	3	3	3	0	Zinc-binding	domain	of	primase-helicase
HypA	PF01155.19	gi|410672181|ref|YP_006924552.1|	-	0.15	12.1	3.9	0.49	10.4	0.5	2.0	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
RecR	PF02132.15	gi|410672181|ref|YP_006924552.1|	-	0.17	11.4	0.2	0.17	11.4	0.2	2.9	2	1	1	3	3	3	0	RecR	protein
FYDLN_acid	PF09538.10	gi|410672181|ref|YP_006924552.1|	-	0.18	12.5	5.2	0.26	12.0	0.3	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(FYDLN_acid)
IBR	PF01485.21	gi|410672181|ref|YP_006924552.1|	-	0.27	11.5	8.6	26	5.1	8.6	2.2	1	1	0	1	1	1	0	IBR	domain,	a	half	RING-finger	domain
ADD_DNMT3	PF17980.1	gi|410672181|ref|YP_006924552.1|	-	0.28	11.2	3.9	0.56	10.2	0.1	2.6	2	1	1	3	3	3	0	Cysteine	rich	ADD	domain	in	DNMT3
TF_Zn_Ribbon	PF08271.12	gi|410672181|ref|YP_006924552.1|	-	0.49	10.0	4.5	3.3	7.3	2.2	2.3	2	1	0	2	2	2	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|410672181|ref|YP_006924552.1|	-	0.72	10.0	8.6	3.2	7.9	0.4	3.0	1	1	2	3	3	3	0	Zinc	ribbon	domain
zf-UDP	PF14569.6	gi|410672181|ref|YP_006924552.1|	-	0.94	9.6	6.3	24	5.1	0.3	3.0	2	1	1	3	3	3	0	Zinc-binding	RING-finger
OrfB_Zn_ribbon	PF07282.11	gi|410672181|ref|YP_006924552.1|	-	1.3	9.0	5.7	1.7	8.6	2.6	2.2	2	1	0	2	2	2	0	Putative	transposase	DNA-binding	domain
zf_UBZ	PF18439.1	gi|410672181|ref|YP_006924552.1|	-	1.4	8.6	7.0	5.6	6.7	0.1	2.9	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
zf-C2H2	PF00096.26	gi|410672181|ref|YP_006924552.1|	-	1.8	9.2	8.3	16	6.1	0.3	3.1	2	1	1	3	3	3	0	Zinc	finger,	C2H2	type
RNA_POL_M_15KD	PF02150.16	gi|410672181|ref|YP_006924552.1|	-	3.3	7.7	9.0	40	4.2	0.2	3.0	2	1	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-RING_4	PF14570.6	gi|410672181|ref|YP_006924552.1|	-	3.8	7.4	10.3	15	5.5	1.2	2.9	2	1	1	3	3	3	0	RING/Ubox	like	zinc-binding	domain
UPF0547	PF10571.9	gi|410672181|ref|YP_006924552.1|	-	4.3	7.5	14.0	0.75	9.9	7.2	2.6	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DDE_Tnp_1_2	PF13586.6	gi|410672182|ref|YP_006924553.1|	-	2.6e-16	59.8	1.0	5.4e-15	55.5	0.1	2.1	2	0	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|410672182|ref|YP_006924553.1|	-	1.3e-11	44.5	3.4	3.4e-11	43.2	3.4	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_4	PF13359.6	gi|410672182|ref|YP_006924553.1|	-	0.054	13.2	0.0	0.062	13.0	0.0	1.1	1	0	0	1	1	1	0	DDE	superfamily	endonuclease
RNA_pol_L_2	PF13656.6	gi|410672182|ref|YP_006924553.1|	-	0.13	12.0	0.0	0.18	11.6	0.0	1.3	1	0	0	1	1	1	0	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Acetyltransf_1	PF00583.25	gi|410672184|ref|YP_006924555.1|	-	1.2e-15	57.8	0.1	1.5e-15	57.4	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|410672184|ref|YP_006924555.1|	-	2.1e-12	47.1	0.1	2.7e-12	46.7	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|410672184|ref|YP_006924555.1|	-	8.1e-12	45.4	0.1	1.4e-11	44.6	0.1	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|410672184|ref|YP_006924555.1|	-	1.3e-07	31.4	0.0	2.3e-07	30.7	0.0	1.5	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_15	PF17013.5	gi|410672184|ref|YP_006924555.1|	-	9.2e-06	25.3	0.5	1.1e-05	25.1	0.5	1.2	1	0	0	1	1	1	1	Putative	acetyl-transferase
Acetyltransf_9	PF13527.7	gi|410672184|ref|YP_006924555.1|	-	1.7e-05	24.9	0.1	2e-05	24.6	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|410672184|ref|YP_006924555.1|	-	0.00022	21.4	0.2	0.00027	21.1	0.2	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|410672184|ref|YP_006924555.1|	-	0.00036	21.2	0.0	0.00044	20.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|410672184|ref|YP_006924555.1|	-	0.012	15.3	0.0	0.019	14.7	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|410672184|ref|YP_006924555.1|	-	0.057	13.6	0.0	0.11	12.6	0.0	1.5	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Baculo_PP31	PF05311.11	gi|410672184|ref|YP_006924555.1|	-	0.11	11.9	0.3	0.18	11.3	0.3	1.3	1	0	0	1	1	1	0	Baculovirus	33KDa	late	protein	(PP31)
Saf_2TM	PF18303.1	gi|410672185|ref|YP_006924556.1|	-	0.22	11.1	1.7	0.27	10.8	1.7	1.1	1	0	0	1	1	1	0	SAVED-fused	2TM	effector	domain
Phage_Mu_F	PF04233.14	gi|410672187|ref|YP_006924558.1|	-	7.3e-05	23.5	0.6	0.00015	22.5	0.2	1.6	1	1	1	2	2	2	1	Phage	Mu	protein	F	like	protein
Spike_NTD	PF16451.5	gi|410672187|ref|YP_006924558.1|	-	0.052	12.9	0.0	0.056	12.8	0.0	1.1	1	0	0	1	1	1	0	Spike	glycoprotein	N-terminal	domain
DDE_3	PF13358.6	gi|410672188|ref|YP_006924559.1|	-	6.8e-25	87.5	0.6	2.1e-24	86.0	0.1	1.9	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|410672188|ref|YP_006924559.1|	-	2.7e-12	47.1	0.0	6.8e-12	45.8	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|410672188|ref|YP_006924559.1|	-	2.5e-08	33.8	0.0	6.6e-08	32.5	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_33	PF13592.6	gi|410672188|ref|YP_006924559.1|	-	4.6e-08	32.6	0.0	1.7e-07	30.8	0.0	2.0	2	0	0	2	2	2	1	Winged	helix-turn	helix
DDE_1	PF03184.19	gi|410672188|ref|YP_006924559.1|	-	1.1e-06	28.4	1.3	1.3e-06	28.2	0.2	1.8	2	1	0	2	2	2	1	DDE	superfamily	endonuclease
HTH_23	PF13384.6	gi|410672188|ref|YP_006924559.1|	-	4.1e-06	26.4	0.2	1.6e-05	24.5	0.0	2.1	3	0	0	3	3	3	1	Homeodomain-like	domain
rve	PF00665.26	gi|410672188|ref|YP_006924559.1|	-	5.5e-05	23.3	0.0	0.00011	22.4	0.0	1.5	1	0	0	1	1	1	1	Integrase	core	domain
HTH_28	PF13518.6	gi|410672188|ref|YP_006924559.1|	-	0.0026	17.8	0.0	0.006	16.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_ABP1_N	PF18107.1	gi|410672188|ref|YP_006924559.1|	-	0.0084	15.8	0.1	0.018	14.8	0.1	1.5	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
Peptidase_M23	PF01551.22	gi|410672189|ref|YP_006924560.1|	-	5.1e-18	65.1	0.0	2.2e-16	59.9	0.0	2.1	1	1	0	1	1	1	1	Peptidase	family	M23
RnfC_N	PF13375.6	gi|410672189|ref|YP_006924560.1|	-	0.018	15.0	0.0	0.43	10.6	0.0	2.2	2	0	0	2	2	2	0	RnfC	Barrel	sandwich	hybrid	domain
DUF4968	PF16338.5	gi|410672190|ref|YP_006924561.1|	-	0.095	13.0	5.3	2.7	8.4	0.9	3.0	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4968)
DUF4177	PF13783.6	gi|410672191|ref|YP_006924562.1|	-	2.4e-05	24.6	0.8	3.1e-05	24.2	0.8	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4177)
DUF2812	PF11193.8	gi|410672191|ref|YP_006924562.1|	-	0.017	15.3	0.2	0.017	15.3	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2812)
HicA_toxin	PF07927.12	gi|410672192|ref|YP_006924563.1|	-	7.2e-16	58.0	0.0	8.2e-16	57.8	0.0	1.1	1	0	0	1	1	1	1	HicA	toxin	of	bacterial	toxin-antitoxin,
HicB_lk_antitox	PF15919.5	gi|410672193|ref|YP_006924564.1|	-	1.5e-08	34.8	0.1	1.6e-08	34.7	0.1	1.0	1	0	0	1	1	1	1	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
DUF1902	PF08972.11	gi|410672193|ref|YP_006924564.1|	-	2.6e-05	24.1	0.0	2.8e-05	24.0	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1902)
TrmB	PF01978.19	gi|410672194|ref|YP_006924565.1|	-	0.00044	20.1	0.0	0.0014	18.4	0.0	1.8	1	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_37	PF13744.6	gi|410672194|ref|YP_006924565.1|	-	0.0057	16.6	0.0	0.0086	16.0	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|410672194|ref|YP_006924565.1|	-	0.0082	16.5	0.0	0.016	15.6	0.0	1.5	1	1	0	1	1	1	1	Transcriptional	regulator
WHAMM-JMY_N	PF15920.5	gi|410672194|ref|YP_006924565.1|	-	0.026	14.4	0.0	0.049	13.5	0.0	1.5	1	0	0	1	1	1	0	N-terminal	of	Junction-mediating	and	WASP	homolog-associated
DUF961	PF06125.11	gi|410672194|ref|YP_006924565.1|	-	0.056	13.8	0.2	0.064	13.6	0.2	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF961)
MarR_2	PF12802.7	gi|410672194|ref|YP_006924565.1|	-	0.091	12.7	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	MarR	family
MarR	PF01047.22	gi|410672194|ref|YP_006924565.1|	-	0.098	12.6	0.0	0.2	11.6	0.0	1.5	1	1	0	1	1	1	0	MarR	family
NosD	PF05048.13	gi|410672195|ref|YP_006924566.1|	-	2.1e-31	109.0	67.8	3.4e-23	82.2	37.9	3.3	2	1	1	3	3	3	3	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.6	gi|410672195|ref|YP_006924566.1|	-	5.7e-26	91.3	84.5	1.5e-15	57.4	33.2	4.4	2	2	1	3	3	3	3	Right	handed	beta	helix	region
Pectate_lyase_3	PF12708.7	gi|410672195|ref|YP_006924566.1|	-	0.015	15.2	46.3	0.36	10.6	3.6	4.5	1	1	3	4	4	4	0	Pectate	lyase	superfamily	protein
Neocarzinostat	PF00960.18	gi|410672195|ref|YP_006924566.1|	-	0.022	14.8	0.1	0.16	12.0	0.2	2.5	2	0	0	2	2	2	0	Neocarzinostatin	family
WW_like	PF17890.1	gi|410672195|ref|YP_006924566.1|	-	0.049	13.7	0.0	0.19	11.8	0.0	2.1	1	0	0	1	1	1	0	Peptidoglycan	hydrolase	LytB	WW-like	domain
Ribonucleas_3_3	PF14622.6	gi|410672196|ref|YP_006924567.1|	-	2.1e-05	24.7	0.0	3.5e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	Ribonuclease-III-like
Ribonuclease_3	PF00636.26	gi|410672196|ref|YP_006924567.1|	-	0.0023	18.5	0.1	0.01	16.5	0.1	2.0	1	1	0	1	1	1	1	Ribonuclease	III	domain
dsrm	PF00035.26	gi|410672196|ref|YP_006924567.1|	-	0.012	16.3	0.0	1.2	9.9	0.0	2.7	2	0	0	2	2	2	0	Double-stranded	RNA	binding	motif
AbiJ_NTD4	PF18863.1	gi|410672196|ref|YP_006924567.1|	-	0.12	12.8	0.0	0.19	12.2	0.0	1.3	1	0	0	1	1	1	0	AbiJ	N-terminal	domain	4
HTH_20	PF12840.7	gi|410672198|ref|YP_006924569.1|	-	0.029	14.4	0.0	0.078	13.1	0.1	1.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_45	PF14947.6	gi|410672198|ref|YP_006924569.1|	-	0.066	13.2	0.0	0.09	12.8	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
DDE_Tnp_1	PF01609.21	gi|410672199|ref|YP_006924570.1|	-	9.5e-06	25.4	0.4	1.4e-05	24.9	0.4	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
Peptidase_C25_C	PF03785.14	gi|410672199|ref|YP_006924570.1|	-	0.071	13.0	0.5	2.7	7.9	0.0	3.1	3	1	1	4	4	4	0	Peptidase	family	C25,	C	terminal	ig-like	domain
DDE_Tnp_IS1	PF03400.13	gi|410672200|ref|YP_006924571.1|	-	1.2e-08	35.4	0.1	1.3e-08	35.3	0.1	1.0	1	0	0	1	1	1	1	IS1	transposase
TERT_thumb	PF17984.1	gi|410672200|ref|YP_006924571.1|	-	0.022	14.6	0.1	0.022	14.6	0.1	1.1	1	0	0	1	1	1	0	Telomerase	reverse	transcriptase	thumb	DNA	binding	domain
EPO_TPO	PF00758.18	gi|410672200|ref|YP_006924571.1|	-	0.068	13.2	0.0	0.084	12.9	0.0	1.1	1	0	0	1	1	1	0	Erythropoietin/thrombopoietin
betaPIX_CC	PF16523.5	gi|410672201|ref|YP_006924572.1|	-	1.1	9.2	4.9	0.57	10.0	1.5	2.3	2	1	0	2	2	2	0	betaPIX	coiled	coil
DDE_3	PF13358.6	gi|410672202|ref|YP_006924573.1|	-	6.9e-23	81.0	0.1	1e-22	80.4	0.1	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_1	PF03184.19	gi|410672202|ref|YP_006924573.1|	-	1.7e-07	31.1	0.1	2.1e-07	30.8	0.1	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|410672202|ref|YP_006924573.1|	-	1.1e-05	25.6	0.0	1.8e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	Integrase	core	domain
Ribosomal_S2	PF00318.20	gi|410672202|ref|YP_006924573.1|	-	0.0074	15.5	1.6	1	8.5	0.1	2.1	2	0	0	2	2	2	2	Ribosomal	protein	S2
DDE_Tnp_ISAZ013	PF07592.11	gi|410672202|ref|YP_006924573.1|	-	0.031	13.2	0.1	0.042	12.8	0.1	1.2	1	0	0	1	1	1	0	Rhodopirellula	transposase	DDE	domain
HTH_32	PF13565.6	gi|410672203|ref|YP_006924574.1|	-	3.3e-12	46.8	0.0	5.2e-12	46.2	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_33	PF13592.6	gi|410672203|ref|YP_006924574.1|	-	2.1e-08	33.7	0.0	4.7e-08	32.6	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_29	PF13551.6	gi|410672203|ref|YP_006924574.1|	-	1.5e-07	31.3	0.0	3e-07	30.4	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|410672203|ref|YP_006924574.1|	-	2.2e-06	27.3	0.1	1.1e-05	25.1	0.0	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_ABP1_N	PF18107.1	gi|410672203|ref|YP_006924574.1|	-	0.0033	17.1	0.1	0.0053	16.4	0.1	1.3	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
HTH_28	PF13518.6	gi|410672203|ref|YP_006924574.1|	-	0.0041	17.2	0.0	0.0094	16.1	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Tnp_1_2	PF13022.6	gi|410672203|ref|YP_006924574.1|	-	0.07	13.3	0.2	2.7	8.1	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	of	insertion	element	transposase
Tubulin_2	PF13809.6	gi|410672205|ref|YP_006924576.1|	-	8.8e-15	54.7	0.1	5.8e-13	48.7	0.0	2.7	2	0	0	2	2	2	1	Tubulin	like
Tubulin	PF00091.25	gi|410672205|ref|YP_006924576.1|	-	2e-06	28.1	2.4	0.00016	21.9	0.1	3.6	4	0	0	4	4	4	1	Tubulin/FtsZ	family,	GTPase	domain
Lzipper-MIP1	PF14389.6	gi|410672205|ref|YP_006924576.1|	-	0.037	14.3	3.2	0.073	13.4	0.9	2.8	2	0	0	2	2	2	0	Leucine-zipper	of	ternary	complex	factor	MIP1
FlxA	PF14282.6	gi|410672205|ref|YP_006924576.1|	-	4.2	7.4	14.2	0.53	10.3	4.7	3.7	2	1	1	3	3	3	0	FlxA-like	protein
YqgF	PF14639.6	gi|410672205|ref|YP_006924576.1|	-	9.1	6.1	7.3	23	4.7	0.6	3.3	2	2	1	3	3	3	0	Holliday-junction	resolvase-like	of	SPT6
AAA_22	PF13401.6	gi|410672206|ref|YP_006924577.1|	-	0.0062	16.8	0.2	0.17	12.1	0.2	2.5	1	1	0	1	1	1	1	AAA	domain
ATPase_2	PF01637.18	gi|410672206|ref|YP_006924577.1|	-	0.014	15.3	5.6	0.19	11.6	5.5	2.4	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
PduV-EutP	PF10662.9	gi|410672206|ref|YP_006924577.1|	-	0.038	13.7	0.2	0.97	9.2	0.0	2.9	3	1	0	3	3	3	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_16	PF13191.6	gi|410672206|ref|YP_006924577.1|	-	0.074	13.4	0.0	0.58	10.5	0.0	2.2	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|410672206|ref|YP_006924577.1|	-	0.11	12.9	0.1	1.2	9.6	0.0	2.4	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_24	PF13479.6	gi|410672206|ref|YP_006924577.1|	-	0.16	11.7	0.5	1.6	8.4	0.0	2.7	3	0	0	3	3	3	0	AAA	domain
DUF805	PF05656.14	gi|410672206|ref|YP_006924577.1|	-	0.88	10.0	7.4	0.53	10.7	0.6	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF805)
Yip1	PF04893.17	gi|410672206|ref|YP_006924577.1|	-	1.4	8.6	24.3	46	3.7	24.3	2.2	1	1	0	1	1	1	0	Yip1	domain
DUF3671	PF12420.8	gi|410672206|ref|YP_006924577.1|	-	4.4	7.4	13.3	16	5.6	6.2	4.0	2	1	0	2	2	2	0	Protein	of	unknown	function
PIG-F	PF06699.11	gi|410672206|ref|YP_006924577.1|	-	8.9	6.4	7.6	1.2	9.3	0.8	2.4	2	0	0	2	2	2	0	GPI	biosynthesis	protein	family	Pig-F
PKD	PF00801.20	gi|410672207|ref|YP_006924578.1|	-	7.5e-07	28.9	2.1	1.8e-06	27.7	2.1	1.7	1	1	0	1	1	1	1	PKD	domain
UNC45-central	PF11701.8	gi|410672207|ref|YP_006924578.1|	-	0.015	15.3	0.2	0.13	12.2	0.0	2.3	2	0	0	2	2	2	0	Myosin-binding	striated	muscle	assembly	central
AAA_6	PF12774.7	gi|410672207|ref|YP_006924578.1|	-	0.041	12.9	1.2	0.072	12.0	1.2	1.3	1	0	0	1	1	1	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
MCH	PF02289.16	gi|410672208|ref|YP_006924579.1|	-	2.4e-134	447.5	0.0	2.7e-134	447.4	0.0	1.0	1	0	0	1	1	1	1	Cyclohydrolase	(MCH)
Response_reg	PF00072.24	gi|410672209|ref|YP_006924580.1|	-	3.4e-27	94.8	0.6	7e-27	93.8	0.6	1.6	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|410672209|ref|YP_006924580.1|	-	6.1e-21	75.0	0.0	1.2e-20	74.1	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|410672209|ref|YP_006924580.1|	-	1.3e-10	41.4	0.0	2.1e-10	40.8	0.0	1.3	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|410672209|ref|YP_006924580.1|	-	3.3e-07	30.5	0.0	8.2e-07	29.2	0.0	1.7	1	0	0	1	1	1	1	PAS	domain
PAS_3	PF08447.12	gi|410672209|ref|YP_006924580.1|	-	7e-05	23.0	0.0	0.00015	22.0	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
PAS	PF00989.25	gi|410672209|ref|YP_006924580.1|	-	0.00011	22.2	0.0	0.00026	21.0	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
HisKA	PF00512.25	gi|410672209|ref|YP_006924580.1|	-	0.0024	17.8	0.2	0.0085	16.1	0.2	2.0	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|410672209|ref|YP_006924580.1|	-	0.013	15.4	0.0	0.023	14.6	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|410672209|ref|YP_006924580.1|	-	0.014	15.3	0.0	0.057	13.3	0.0	1.9	2	0	0	2	2	2	0	GHKL	domain
HATPase_c_3	PF13589.6	gi|410672209|ref|YP_006924580.1|	-	0.015	15.1	0.0	0.032	14.1	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Cyt-b5	PF00173.28	gi|410672212|ref|YP_006924583.1|	-	2.7e-10	40.3	0.4	3.7e-10	39.8	0.4	1.2	1	0	0	1	1	1	1	Cytochrome	b5-like	Heme/Steroid	binding	domain
HTH_19	PF12844.7	gi|410672212|ref|YP_006924583.1|	-	0.012	15.6	0.1	0.015	15.3	0.1	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
RseA_N	PF03872.13	gi|410672212|ref|YP_006924583.1|	-	0.024	15.1	0.2	0.042	14.3	0.2	1.3	1	0	0	1	1	1	0	Anti	sigma-E	protein	RseA,	N-terminal	domain
Inhibitor_I42	PF09394.10	gi|410672214|ref|YP_006924585.1|	-	2e-27	95.4	0.2	3.6e-27	94.6	0.2	1.4	1	0	0	1	1	1	1	Chagasin	family	peptidase	inhibitor	I42
EstA_Ig_like	PF18435.1	gi|410672214|ref|YP_006924585.1|	-	0.00071	19.7	0.0	0.0012	19.1	0.0	1.4	1	1	0	1	1	1	1	Esterase	Ig-like	N-terminal	domain
LPAM_1	PF08139.12	gi|410672214|ref|YP_006924585.1|	-	0.24	12.0	0.6	0.53	10.9	0.6	1.6	1	0	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
E1-E2_ATPase	PF00122.20	gi|410672215|ref|YP_006924586.1|	-	1.2e-52	178.1	2.4	1.2e-52	178.1	2.4	2.6	3	0	0	3	3	3	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|410672215|ref|YP_006924586.1|	-	3.7e-42	145.0	0.2	7.3e-42	144.0	0.2	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|410672215|ref|YP_006924586.1|	-	2.2e-05	24.3	4.4	0.003	17.4	0.9	2.6	2	1	0	3	3	3	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|410672215|ref|YP_006924586.1|	-	0.00014	22.4	0.0	0.00034	21.1	0.0	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|410672215|ref|YP_006924586.1|	-	0.05	13.7	0.4	0.16	12.1	0.0	1.9	2	0	0	2	2	2	0	Haloacid	dehalogenase-like	hydrolase
EMC3_TMCO1	PF01956.16	gi|410672215|ref|YP_006924586.1|	-	0.086	12.6	0.1	0.25	11.1	0.1	1.8	1	0	0	1	1	1	0	Integral	membrane	protein	EMC3/TMCO1-like
ADK_lid	PF05191.14	gi|410672216|ref|YP_006924587.1|	-	0.0012	18.7	2.3	0.002	18.1	2.3	1.4	1	1	0	1	1	1	1	Adenylate	kinase,	active	site	lid
zf-FPG_IleRS	PF06827.14	gi|410672216|ref|YP_006924587.1|	-	0.003	17.4	1.1	0.17	11.8	0.1	2.1	2	0	0	2	2	2	1	Zinc	finger	found	in	FPG	and	IleRS
DZR	PF12773.7	gi|410672216|ref|YP_006924587.1|	-	0.0072	16.3	1.2	0.009	16.0	1.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|410672216|ref|YP_006924587.1|	-	0.029	14.5	1.8	0.039	14.1	1.8	1.2	1	0	0	1	1	1	0	Zinc	ribbon	domain
HypA	PF01155.19	gi|410672216|ref|YP_006924587.1|	-	0.031	14.3	2.6	0.031	14.3	2.6	1.0	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc-ribbons_6	PF07191.12	gi|410672216|ref|YP_006924587.1|	-	0.037	14.0	1.2	0.056	13.4	1.2	1.3	1	1	0	1	1	1	0	zinc-ribbons
OrfB_Zn_ribbon	PF07282.11	gi|410672216|ref|YP_006924587.1|	-	0.12	12.4	2.4	0.15	12.0	2.4	1.1	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DNA_RNApol_7kD	PF03604.13	gi|410672216|ref|YP_006924587.1|	-	0.15	11.8	3.3	0.45	10.2	3.3	1.7	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf_UBZ	PF18439.1	gi|410672216|ref|YP_006924587.1|	-	0.26	10.9	2.6	0.32	10.6	0.2	1.9	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
DiS_P_DiS	PF06750.13	gi|410672216|ref|YP_006924587.1|	-	0.32	11.2	1.2	1.1	9.4	1.2	1.8	1	1	0	1	1	1	0	Bacterial	Peptidase	A24	N-terminal	domain
DUF983	PF06170.12	gi|410672216|ref|YP_006924587.1|	-	0.78	10.2	2.9	5.9	7.4	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF983)
Glyco_hydro_130	PF04041.13	gi|410672217|ref|YP_006924588.1|	-	3.8e-58	196.9	0.0	4.6e-58	196.7	0.0	1.0	1	0	0	1	1	1	1	beta-1,4-mannooligosaccharide	phosphorylase
Glyco_hydro_43	PF04616.14	gi|410672217|ref|YP_006924588.1|	-	0.019	14.3	0.6	0.41	9.9	0.0	2.3	2	1	0	2	2	2	0	Glycosyl	hydrolases	family	43
Polysacc_synt	PF01943.17	gi|410672218|ref|YP_006924589.1|	-	6.3e-25	88.1	26.0	6.3e-25	88.1	26.0	2.8	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.6	gi|410672218|ref|YP_006924589.1|	-	4.2e-20	72.1	15.6	4.2e-20	72.1	15.6	2.5	1	1	2	3	3	3	1	Polysaccharide	biosynthesis	protein
MatE	PF01554.18	gi|410672218|ref|YP_006924589.1|	-	5.2e-20	71.7	40.3	2.2e-14	53.4	15.4	3.3	3	0	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|410672218|ref|YP_006924589.1|	-	4.8e-15	55.9	20.4	4.8e-15	55.9	20.4	4.1	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	C-terminal	domain
MurJ	PF03023.14	gi|410672218|ref|YP_006924589.1|	-	2.1e-07	29.9	36.4	3.6e-07	29.1	36.4	1.4	1	0	0	1	1	1	1	Lipid	II	flippase	MurJ
Glycos_transf_1	PF00534.20	gi|410672219|ref|YP_006924590.1|	-	7.3e-16	58.2	0.0	1.3e-15	57.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|410672219|ref|YP_006924590.1|	-	1.5e-12	48.1	0.0	3.1e-12	47.1	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|410672219|ref|YP_006924590.1|	-	3.1e-11	43.6	0.0	5.5e-11	42.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_hydro_127	PF07944.12	gi|410672219|ref|YP_006924590.1|	-	1.5e-06	27.0	0.9	1.6e-05	23.6	0.9	2.3	1	1	0	1	1	1	1	Beta-L-arabinofuranosidase,	GH127
Glyco_hydro_88	PF07470.13	gi|410672219|ref|YP_006924590.1|	-	2.5e-06	26.8	1.0	7.9e-06	25.2	0.8	1.9	2	0	0	2	2	2	1	Glycosyl	Hydrolase	Family	88
C5-epim_C	PF06662.13	gi|410672219|ref|YP_006924590.1|	-	3.8e-06	26.5	0.8	0.0067	15.9	0.2	2.4	2	0	0	2	2	2	2	D-glucuronyl	C5-epimerase	C-terminus
Glyco_hydro_76	PF03663.14	gi|410672219|ref|YP_006924590.1|	-	0.00051	19.7	1.5	0.00095	18.8	1.5	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	76
GlcNAc_2-epim	PF07221.11	gi|410672219|ref|YP_006924590.1|	-	0.0041	16.4	0.1	0.041	13.1	0.1	2.1	1	1	0	1	1	1	1	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
Glyco_hydro_47	PF01532.20	gi|410672219|ref|YP_006924590.1|	-	0.018	13.9	0.1	1.2	8.0	0.0	2.3	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	47
Pec_lyase	PF09492.10	gi|410672219|ref|YP_006924590.1|	-	0.1	11.9	0.6	1.4	8.2	0.0	2.4	1	1	0	2	2	2	0	Pectic	acid	lyase
Glyco_trans_1_2	PF13524.6	gi|410672219|ref|YP_006924590.1|	-	0.14	12.6	0.0	0.36	11.2	0.0	1.7	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
DUF4518	PF15008.6	gi|410672219|ref|YP_006924590.1|	-	0.17	11.0	0.0	0.3	10.2	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4518)
Glyco_hydro_130	PF04041.13	gi|410672220|ref|YP_006924591.1|	-	6e-57	193.0	0.0	7.3e-57	192.7	0.0	1.0	1	0	0	1	1	1	1	beta-1,4-mannooligosaccharide	phosphorylase
Imm35	PF15567.6	gi|410672220|ref|YP_006924591.1|	-	0.14	12.3	0.4	8	6.7	0.0	2.8	3	1	1	4	4	4	0	Immunity	protein	35
MannoseP_isomer	PF01050.18	gi|410672221|ref|YP_006924592.1|	-	3.5e-34	117.9	0.5	8.3e-34	116.7	0.5	1.7	1	1	0	1	1	1	1	Mannose-6-phosphate	isomerase
Glycos_transf_1	PF00534.20	gi|410672221|ref|YP_006924592.1|	-	3.8e-26	91.7	0.1	7.4e-26	90.7	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|410672221|ref|YP_006924592.1|	-	1e-17	64.8	0.0	2.8e-17	63.4	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Cupin_2	PF07883.11	gi|410672221|ref|YP_006924592.1|	-	1.1e-14	53.9	0.1	2.2e-14	52.9	0.1	1.5	1	0	0	1	1	1	1	Cupin	domain
Glyco_transf_4	PF13439.6	gi|410672221|ref|YP_006924592.1|	-	9.7e-10	38.7	0.0	1.3e-08	35.0	0.0	2.2	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|410672221|ref|YP_006924592.1|	-	5.8e-07	29.8	0.0	1.7e-06	28.4	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Cupin_1	PF00190.22	gi|410672221|ref|YP_006924592.1|	-	0.005	16.5	0.0	0.011	15.4	0.0	1.5	1	0	0	1	1	1	1	Cupin
Auxin_BP	PF02041.16	gi|410672221|ref|YP_006924592.1|	-	0.022	14.4	0.2	0.1	12.2	0.1	2.1	2	1	0	2	2	2	0	Auxin	binding	protein
DUF2671	PF10877.8	gi|410672221|ref|YP_006924592.1|	-	0.084	12.7	0.0	0.22	11.3	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2671)
S_4TM	PF18159.1	gi|410672221|ref|YP_006924592.1|	-	0.25	10.6	0.5	0.62	9.3	0.2	1.7	2	0	0	2	2	2	0	SMODS-associating	4TM	effector	domain
CMD	PF02627.20	gi|410672223|ref|YP_006924594.1|	-	0.0024	17.9	0.0	0.0038	17.2	0.0	1.3	1	1	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
EamA	PF00892.20	gi|410672224|ref|YP_006924595.1|	-	7.5e-34	116.8	38.6	3.7e-18	66.0	16.4	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
MinC_N	PF05209.13	gi|410672224|ref|YP_006924595.1|	-	0.058	13.4	0.0	0.11	12.5	0.0	1.4	1	0	0	1	1	1	0	Septum	formation	inhibitor	MinC,	N-terminal	domain
Rsm22	PF09243.10	gi|410672227|ref|YP_006924598.1|	-	2.7e-11	43.2	0.0	9.3e-11	41.5	0.0	1.6	1	1	0	2	2	2	1	Mitochondrial	small	ribosomal	subunit	Rsm22
Methyltransf_31	PF13847.6	gi|410672227|ref|YP_006924598.1|	-	3.4e-07	30.2	0.0	7.5e-07	29.1	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|410672227|ref|YP_006924598.1|	-	7e-06	26.0	0.0	1.3e-05	25.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410672227|ref|YP_006924598.1|	-	0.0036	17.9	0.0	0.0071	17.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|410672227|ref|YP_006924598.1|	-	0.0099	16.6	0.0	0.023	15.4	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|410672227|ref|YP_006924598.1|	-	0.02	15.6	0.0	0.12	13.1	0.0	2.2	2	0	0	2	2	2	0	Methyltransferase	domain
CheR	PF01739.18	gi|410672227|ref|YP_006924598.1|	-	0.082	12.4	0.2	0.71	9.3	0.1	2.3	2	1	0	2	2	2	0	CheR	methyltransferase,	SAM	binding	domain
MTS	PF05175.14	gi|410672227|ref|YP_006924598.1|	-	0.14	11.7	0.0	0.32	10.5	0.0	1.6	1	1	0	1	1	1	0	Methyltransferase	small	domain
B12-binding	PF02310.19	gi|410672228|ref|YP_006924599.1|	-	6.5e-18	64.9	0.1	1.2e-17	64.1	0.1	1.4	1	0	0	1	1	1	1	B12	binding	domain
B12-binding_2	PF02607.17	gi|410672228|ref|YP_006924599.1|	-	2e-16	60.2	1.0	6.3e-16	58.6	0.6	2.1	2	1	0	2	2	2	1	B12	binding	domain
DNA_pol3_gamma3	PF12169.8	gi|410672228|ref|YP_006924599.1|	-	0.01	15.8	0.5	0.021	14.8	0.5	1.5	1	0	0	1	1	1	0	DNA	polymerase	III	subunits	gamma	and	tau	domain	III
PAS_9	PF13426.7	gi|410672229|ref|YP_006924600.1|	-	1.5e-51	173.0	3.1	1.7e-10	41.1	0.0	6.3	6	0	0	6	6	6	6	PAS	domain
PAS	PF00989.25	gi|410672229|ref|YP_006924600.1|	-	2.5e-50	169.2	0.3	1.3e-08	34.8	0.0	6.3	6	0	0	6	6	6	6	PAS	fold
PAS_3	PF08447.12	gi|410672229|ref|YP_006924600.1|	-	2.1e-38	130.5	0.0	8.4e-16	58.0	0.2	5.9	6	0	0	6	6	6	4	PAS	fold
PAS_4	PF08448.10	gi|410672229|ref|YP_006924600.1|	-	4.7e-36	123.4	0.0	2.4e-06	27.8	0.0	6.2	6	0	0	6	6	6	6	PAS	fold
PAS_8	PF13188.7	gi|410672229|ref|YP_006924600.1|	-	9.3e-35	118.1	0.5	2.1e-07	30.8	0.0	5.8	6	0	0	6	6	6	5	PAS	domain
GAF_2	PF13185.6	gi|410672229|ref|YP_006924600.1|	-	5.5e-08	33.2	0.0	2.3e-07	31.2	0.0	2.0	2	0	0	2	2	2	1	GAF	domain
GAF_3	PF13492.6	gi|410672229|ref|YP_006924600.1|	-	4.4e-07	30.3	0.0	7.7e-07	29.5	0.0	1.4	1	0	0	1	1	1	1	GAF	domain
PAS_7	PF12860.7	gi|410672229|ref|YP_006924600.1|	-	5e-06	26.7	0.4	2.6	8.3	0.0	5.8	5	0	0	5	5	5	1	PAS	fold
PAS_12	PF18095.1	gi|410672229|ref|YP_006924600.1|	-	4.6e-05	23.1	1.4	2.5	7.7	0.1	4.3	4	0	0	4	4	4	3	UPF0242	C-terminal	PAS-like	domain
B12-binding	PF02310.19	gi|410672231|ref|YP_006924602.1|	-	9.1e-18	64.4	0.2	1.6e-17	63.6	0.2	1.4	1	0	0	1	1	1	1	B12	binding	domain
B12-binding_2	PF02607.17	gi|410672231|ref|YP_006924602.1|	-	9.4e-16	58.0	0.7	2.1e-15	56.9	0.3	1.9	2	0	0	2	2	2	1	B12	binding	domain
UPF0180	PF03698.13	gi|410672231|ref|YP_006924602.1|	-	0.019	15.1	0.0	0.043	14.0	0.0	1.6	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0180)
MtaB	PF12176.8	gi|410672232|ref|YP_006924603.1|	-	1e-227	756.4	5.4	1.2e-227	756.2	5.4	1.0	1	0	0	1	1	1	1	Methanol-cobalamin	methyltransferase	B	subunit
Lon_C	PF05362.13	gi|410672233|ref|YP_006924604.1|	-	2.6e-13	50.0	4.5	3.3e-13	49.7	2.7	1.8	1	1	1	2	2	2	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
Sec2p	PF06428.11	gi|410672233|ref|YP_006924604.1|	-	0.011	15.7	1.7	0.019	14.9	0.7	1.9	2	0	0	2	2	2	0	GDP/GTP	exchange	factor	Sec2p
3-HAO	PF06052.12	gi|410672233|ref|YP_006924604.1|	-	0.063	12.9	0.2	0.21	11.2	0.0	1.9	3	0	0	3	3	3	0	3-hydroxyanthranilic	acid	dioxygenase
Methyltransf_25	PF13649.6	gi|410672234|ref|YP_006924605.1|	-	9.8e-18	64.7	0.0	2.8e-17	63.2	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|410672234|ref|YP_006924605.1|	-	3.7e-16	59.6	0.0	7.8e-16	58.5	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|410672234|ref|YP_006924605.1|	-	1.3e-11	44.6	0.0	1.8e-11	44.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|410672234|ref|YP_006924605.1|	-	8.9e-11	41.6	0.0	2.5e-10	40.1	0.0	1.6	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|410672234|ref|YP_006924605.1|	-	1.3e-06	29.0	0.0	2.1e-06	28.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|410672234|ref|YP_006924605.1|	-	2.7e-05	24.1	0.0	4.8e-05	23.2	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|410672234|ref|YP_006924605.1|	-	3.9e-05	23.3	0.0	6e-05	22.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
PCMT	PF01135.19	gi|410672234|ref|YP_006924605.1|	-	0.00019	21.2	0.0	0.0003	20.6	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_18	PF12847.7	gi|410672234|ref|YP_006924605.1|	-	0.00032	20.6	0.0	0.00058	19.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.17	gi|410672234|ref|YP_006924605.1|	-	0.00056	19.4	0.0	0.0012	18.4	0.0	1.5	2	0	0	2	2	2	1	Putative	methyltransferase
Methyltransf_24	PF13578.6	gi|410672234|ref|YP_006924605.1|	-	0.0011	19.9	0.0	0.002	19.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|410672234|ref|YP_006924605.1|	-	0.0047	16.2	0.0	0.0052	16.1	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_16	PF10294.9	gi|410672234|ref|YP_006924605.1|	-	0.014	15.1	0.0	0.023	14.4	0.0	1.3	1	0	0	1	1	1	0	Lysine	methyltransferase
Methyltransf_PK	PF05891.12	gi|410672234|ref|YP_006924605.1|	-	0.015	14.8	0.0	0.021	14.4	0.0	1.2	1	0	0	1	1	1	0	AdoMet	dependent	proline	di-methyltransferase
RrnaAD	PF00398.20	gi|410672234|ref|YP_006924605.1|	-	0.033	13.2	0.0	0.045	12.8	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltr_RsmB-F	PF01189.17	gi|410672234|ref|YP_006924605.1|	-	0.034	13.8	0.0	0.053	13.2	0.0	1.2	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
DUF938	PF06080.12	gi|410672234|ref|YP_006924605.1|	-	0.035	13.9	0.0	0.051	13.3	0.0	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
TehB	PF03848.14	gi|410672234|ref|YP_006924605.1|	-	0.057	12.8	0.0	0.079	12.4	0.0	1.3	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
Rieske	PF00355.26	gi|410672235|ref|YP_006924606.1|	-	3e-18	65.5	0.0	3.6e-18	65.3	0.0	1.2	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|410672235|ref|YP_006924606.1|	-	5.8e-10	39.1	0.0	8.6e-10	38.5	0.0	1.3	1	1	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
DEAD	PF00270.29	gi|410672237|ref|YP_006924608.1|	-	5e-55	186.0	0.1	1.1e-54	184.8	0.1	1.6	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|410672237|ref|YP_006924608.1|	-	2.4e-33	114.8	0.2	1.6e-30	105.7	0.0	3.0	4	0	0	4	4	4	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|410672237|ref|YP_006924608.1|	-	6.3e-08	32.8	0.0	1.2e-07	32.0	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.6	gi|410672237|ref|YP_006924608.1|	-	0.00041	20.7	0.7	0.18	12.1	0.1	2.9	2	1	0	3	3	3	2	AAA	domain
Helicase_RecD	PF05127.14	gi|410672237|ref|YP_006924608.1|	-	0.00077	19.4	0.0	0.0065	16.3	0.0	2.2	2	1	0	2	2	2	1	Helicase
AAA_30	PF13604.6	gi|410672237|ref|YP_006924608.1|	-	0.00081	19.2	0.0	0.0017	18.1	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
CMS1	PF14617.6	gi|410672237|ref|YP_006924608.1|	-	0.0037	16.6	0.1	0.01	15.2	0.1	1.7	2	0	0	2	2	2	1	U3-containing	90S	pre-ribosomal	complex	subunit
SNF2_N	PF00176.23	gi|410672237|ref|YP_006924608.1|	-	0.0059	15.4	0.0	0.0086	14.8	0.0	1.3	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
UTP25	PF06862.12	gi|410672237|ref|YP_006924608.1|	-	0.013	14.3	0.1	0.051	12.3	0.0	2.0	2	1	1	3	3	3	0	Utp25,	U3	small	nucleolar	RNA-associated	SSU	processome	protein	25
SWI2_SNF2	PF18766.1	gi|410672237|ref|YP_006924608.1|	-	0.03	14.0	0.0	0.077	12.7	0.0	1.7	1	0	0	1	1	1	0	SWI2/SNF2	ATPase
ERCC3_RAD25_C	PF16203.5	gi|410672237|ref|YP_006924608.1|	-	0.069	12.3	0.1	0.1	11.8	0.1	1.4	1	0	0	1	1	1	0	ERCC3/RAD25/XPB	C-terminal	helicase
eIF-1a	PF01176.19	gi|410672238|ref|YP_006924609.1|	-	1.1e-15	57.1	0.2	1.3e-15	56.9	0.2	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
TRAM	PF01938.20	gi|410672239|ref|YP_006924610.1|	-	1.7e-16	59.9	0.9	2e-16	59.7	0.9	1.1	1	0	0	1	1	1	1	TRAM	domain
LT-IIB	PF06453.11	gi|410672239|ref|YP_006924610.1|	-	0.064	13.1	0.0	0.065	13.1	0.0	1.0	1	0	0	1	1	1	0	Type	II	heat-labile	enterotoxin	,	B	subunit	(LT-IIB)
NAPRTase	PF04095.16	gi|410672240|ref|YP_006924611.1|	-	3.3e-60	203.7	0.0	4.4e-60	203.3	0.0	1.1	1	0	0	1	1	1	1	Nicotinate	phosphoribosyltransferase	(NAPRTase)	family
NAPRTase_N	PF17767.1	gi|410672240|ref|YP_006924611.1|	-	1.2e-30	106.5	0.0	2.1e-30	105.7	0.0	1.4	1	0	0	1	1	1	1	Nicotinate	phosphoribosyltransferase	(NAPRTase)	N-terminal	domain
DUF2448	PF10476.9	gi|410672240|ref|YP_006924611.1|	-	0.2	11.5	0.1	0.33	10.8	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	C-terminus	(DUF2448)
HTH_5	PF01022.20	gi|410672241|ref|YP_006924612.1|	-	2.3e-06	27.3	0.2	5.1e-06	26.3	0.2	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|410672241|ref|YP_006924612.1|	-	1.7e-05	24.8	0.0	3.8e-05	23.7	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HxlR	PF01638.17	gi|410672241|ref|YP_006924612.1|	-	0.0031	17.3	0.3	0.016	15.1	0.1	2.2	2	0	0	2	2	2	1	HxlR-like	helix-turn-helix
HTH_45	PF14947.6	gi|410672241|ref|YP_006924612.1|	-	0.0093	15.9	0.3	0.026	14.5	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix
GED	PF02212.18	gi|410672241|ref|YP_006924612.1|	-	0.0094	16.1	3.2	0.019	15.1	3.2	1.5	1	0	0	1	1	1	1	Dynamin	GTPase	effector	domain
Rio2_N	PF09202.11	gi|410672241|ref|YP_006924612.1|	-	0.031	14.5	0.0	0.081	13.2	0.0	1.7	1	0	0	1	1	1	0	Rio2,	N-terminal
FHIPEP	PF00771.20	gi|410672241|ref|YP_006924612.1|	-	0.099	11.1	0.9	0.13	10.7	0.9	1.1	1	0	0	1	1	1	0	FHIPEP	family
Peripla_BP_2	PF01497.18	gi|410672241|ref|YP_006924612.1|	-	0.14	11.7	0.3	3.9	7.0	0.0	2.1	1	1	1	2	2	2	0	Periplasmic	binding	protein
DUF1664	PF07889.12	gi|410672243|ref|YP_006924614.1|	-	0.027	14.5	2.4	0.027	14.5	2.4	4.0	1	1	2	4	4	4	0	Protein	of	unknown	function	(DUF1664)
Lipoprotein_2	PF00921.17	gi|410672243|ref|YP_006924614.1|	-	0.24	10.9	0.1	0.24	10.9	0.1	2.7	2	1	1	3	3	3	0	Borrelia	lipoprotein
Fez1	PF06818.15	gi|410672243|ref|YP_006924614.1|	-	0.31	11.5	37.3	0.4	11.1	17.3	2.2	1	1	1	2	2	2	0	Fez1
HrpB7	PF09486.10	gi|410672243|ref|YP_006924614.1|	-	0.52	10.7	29.4	0.082	13.3	13.7	3.7	1	1	1	3	3	3	0	Bacterial	type	III	secretion	protein	(HrpB7)
Spc7	PF08317.11	gi|410672243|ref|YP_006924614.1|	-	2.8	6.7	45.9	1.4	7.7	14.4	3.1	1	1	2	3	3	3	0	Spc7	kinetochore	protein
SlyX	PF04102.12	gi|410672243|ref|YP_006924614.1|	-	3	8.5	26.4	1.9	9.2	0.7	4.7	3	1	1	4	4	4	0	SlyX
Securin	PF04856.13	gi|410672243|ref|YP_006924614.1|	-	8.8	6.2	11.0	3.3	7.6	1.9	2.5	1	1	0	2	2	2	0	Securin	sister-chromatid	separation	inhibitor
SHE3	PF17078.5	gi|410672243|ref|YP_006924614.1|	-	9.1	5.9	39.2	5.9	6.5	20.9	2.7	1	1	0	2	2	2	0	SWI5-dependent	HO	expression	protein	3
HAMP	PF00672.25	gi|410672244|ref|YP_006924615.1|	-	9.5e-07	29.1	0.0	1.7e-06	28.3	0.0	1.4	1	0	0	1	1	1	1	HAMP	domain
dCache_1	PF02743.18	gi|410672244|ref|YP_006924615.1|	-	3.1e-05	23.9	1.3	5.4e-05	23.1	1.3	1.3	1	0	0	1	1	1	1	Cache	domain
sCache_3_3	PF17202.4	gi|410672244|ref|YP_006924615.1|	-	0.00023	21.5	0.7	0.004	17.6	0.0	2.4	2	1	0	2	2	2	1	Single	cache	domain	3
Cache_3-Cache_2	PF17201.4	gi|410672244|ref|YP_006924615.1|	-	0.0048	16.2	0.0	0.012	14.9	0.0	1.7	1	0	0	1	1	1	1	Cache	3/Cache	2	fusion	domain
sCache_2	PF17200.4	gi|410672248|ref|YP_006924619.1|	-	2.2e-60	203.0	7.3	7.1e-24	84.4	0.5	3.5	2	1	1	3	3	3	3	Single	Cache	domain	2
dCache_2	PF08269.11	gi|410672248|ref|YP_006924619.1|	-	2.2e-45	155.1	1.1	9.4e-29	100.5	0.4	2.3	2	0	0	2	2	2	2	Cache	domain
sCache_3_2	PF17203.4	gi|410672248|ref|YP_006924619.1|	-	2.3e-06	27.8	0.0	0.95	9.6	0.0	3.4	3	1	0	3	3	3	3	Single	cache	domain	3
dCache_1	PF02743.18	gi|410672248|ref|YP_006924619.1|	-	0.00033	20.5	0.6	1.6	8.5	0.0	3.2	3	0	0	3	3	3	2	Cache	domain
LytB_WW	PF18342.1	gi|410672248|ref|YP_006924619.1|	-	0.025	14.7	0.5	32	4.7	0.0	3.6	3	0	0	3	3	3	0	Endo-beta-N-acetylglucosaminidase	LytB	WW	domain
Hexapep_2	PF14602.6	gi|410672249|ref|YP_006924620.1|	-	7.6e-15	54.4	10.7	1.1e-10	41.0	0.7	3.8	3	1	0	3	3	3	3	Hexapeptide	repeat	of	succinyl-transferase
Hexapep	PF00132.24	gi|410672249|ref|YP_006924620.1|	-	1.3e-13	50.1	12.1	4.6e-11	42.0	1.4	4.2	4	1	0	4	4	4	2	Bacterial	transferase	hexapeptide	(six	repeats)
TackOD1	PF18551.1	gi|410672251|ref|YP_006924622.1|	-	0.0096	15.6	1.7	0.0096	15.6	1.7	1.0	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
RecR	PF02132.15	gi|410672251|ref|YP_006924622.1|	-	0.016	14.7	5.5	0.058	13.0	0.6	2.1	1	1	1	2	2	2	0	RecR	protein
Flavodoxin_3	PF12641.7	gi|410672251|ref|YP_006924622.1|	-	0.025	14.3	0.0	0.025	14.3	0.0	1.0	1	0	0	1	1	1	0	Flavodoxin	domain
UPF0547	PF10571.9	gi|410672251|ref|YP_006924622.1|	-	6.9	6.8	10.7	1e+02	3.1	10.7	2.1	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
DZR	PF12773.7	gi|410672252|ref|YP_006924623.1|	-	0.0015	18.5	2.1	0.0025	17.8	2.1	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
RNA_POL_M_15KD	PF02150.16	gi|410672252|ref|YP_006924623.1|	-	0.01	15.7	2.4	0.31	11.0	0.1	2.2	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zinc-ribbons_6	PF07191.12	gi|410672252|ref|YP_006924623.1|	-	0.028	14.4	2.2	0.044	13.8	2.2	1.4	1	1	0	1	1	1	0	zinc-ribbons
zf_UBZ	PF18439.1	gi|410672252|ref|YP_006924623.1|	-	0.12	12.0	3.5	3.3	7.4	0.4	2.4	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
GFA	PF04828.14	gi|410672252|ref|YP_006924623.1|	-	0.27	11.6	4.2	1.7	9.1	0.3	2.1	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
Nudix_N_2	PF14803.6	gi|410672252|ref|YP_006924623.1|	-	0.54	10.2	5.0	4.1	7.4	1.4	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
RNA_pol_inhib	PF16857.5	gi|410672253|ref|YP_006924624.1|	-	0.045	13.5	0.0	0.051	13.4	0.0	1.2	1	0	0	1	1	1	0	RNA	polymerase	inhibitor
RRM_3	PF08777.11	gi|410672254|ref|YP_006924625.1|	-	0.08	13.0	0.0	0.08	13.0	0.0	1.1	1	0	0	1	1	1	0	RNA	binding	motif
DDE_Tnp_IS1	PF03400.13	gi|410672255|ref|YP_006924626.1|	-	1.2e-08	35.4	0.1	1.3e-08	35.3	0.1	1.0	1	0	0	1	1	1	1	IS1	transposase
TERT_thumb	PF17984.1	gi|410672255|ref|YP_006924626.1|	-	0.022	14.6	0.1	0.022	14.6	0.1	1.1	1	0	0	1	1	1	0	Telomerase	reverse	transcriptase	thumb	DNA	binding	domain
EPO_TPO	PF00758.18	gi|410672255|ref|YP_006924626.1|	-	0.068	13.2	0.0	0.084	12.9	0.0	1.1	1	0	0	1	1	1	0	Erythropoietin/thrombopoietin
DUF1724	PF08350.10	gi|410672256|ref|YP_006924627.1|	-	3.4e-18	65.5	1.9	3.5e-18	65.5	0.5	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1724)
Cas_Cas1	PF01867.16	gi|410672257|ref|YP_006924628.1|	-	1.3e-29	103.3	0.5	2.2e-29	102.5	0.1	1.5	2	0	0	2	2	2	1	CRISPR	associated	protein	Cas1
CPBP	PF02517.16	gi|410672258|ref|YP_006924629.1|	-	1e-09	38.6	6.4	1e-09	38.6	6.4	2.6	2	1	0	2	2	2	1	CPBP	intramembrane	metalloprotease
Epiglycanin_C	PF14654.6	gi|410672258|ref|YP_006924629.1|	-	0.24	11.5	1.6	1.5	8.9	0.1	2.3	2	0	0	2	2	2	0	Mucin,	catalytic,	TM	and	cytoplasmic	tail	region
Pox_P21	PF05313.12	gi|410672258|ref|YP_006924629.1|	-	2.8	7.5	5.6	0.79	9.3	0.2	2.2	2	1	0	2	2	2	0	Poxvirus	P21	membrane	protein
Kelch_4	PF13418.6	gi|410672259|ref|YP_006924630.1|	-	7.4e-05	22.7	0.5	3.4	7.8	0.0	5.6	5	1	2	7	7	7	1	Galactose	oxidase,	central	domain
DPPIV_N	PF00930.21	gi|410672259|ref|YP_006924630.1|	-	0.0024	16.7	12.5	0.68	8.6	0.4	4.6	2	2	3	5	5	5	4	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Pepsin-I3	PF06394.13	gi|410672259|ref|YP_006924630.1|	-	0.069	13.3	0.0	4.9	7.4	0.0	2.7	2	0	0	2	2	2	0	Pepsin	inhibitor-3-like	repeated	domain
PQQ	PF01011.21	gi|410672260|ref|YP_006924631.1|	-	0.0077	16.1	2.9	0.21	11.6	0.5	3.9	4	0	0	4	4	4	1	PQQ	enzyme	repeat
ArAE_1_C	PF11728.8	gi|410672260|ref|YP_006924631.1|	-	0.059	13.4	0.3	0.17	11.9	0.3	1.8	1	0	0	1	1	1	0	Putative	aromatic	acid	exporter	C-terminal	domain
TRAM	PF01938.20	gi|410672262|ref|YP_006924633.1|	-	8.7e-17	60.9	1.2	9.3e-17	60.8	1.2	1.0	1	0	0	1	1	1	1	TRAM	domain
Hexapep	PF00132.24	gi|410672262|ref|YP_006924633.1|	-	0.045	13.5	0.1	0.053	13.3	0.1	1.3	1	1	0	1	1	1	0	Bacterial	transferase	hexapeptide	(six	repeats)
PEMT	PF04191.13	gi|410672263|ref|YP_006924634.1|	-	1.6e-09	38.1	1.6	1.6e-09	38.1	1.6	2.4	2	1	2	4	4	4	1	Phospholipid	methyltransferase
PAS_4	PF08448.10	gi|410672264|ref|YP_006924635.1|	-	8.3e-35	119.4	0.0	7.5e-13	48.7	0.1	4.5	4	0	0	4	4	4	3	PAS	fold
HATPase_c	PF02518.26	gi|410672264|ref|YP_006924635.1|	-	5.1e-31	107.5	0.3	1.1e-30	106.4	0.3	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.24	gi|410672264|ref|YP_006924635.1|	-	1.4e-25	89.6	1.2	4.7e-25	87.9	1.2	2.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_9	PF13426.7	gi|410672264|ref|YP_006924635.1|	-	3e-18	66.0	0.9	2.9e-11	43.5	0.1	4.6	4	0	0	4	4	4	2	PAS	domain
HisKA	PF00512.25	gi|410672264|ref|YP_006924635.1|	-	2.7e-17	62.6	2.6	1.3e-16	60.4	0.1	3.2	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.7	gi|410672264|ref|YP_006924635.1|	-	3.3e-11	42.9	0.0	0.016	15.2	0.0	3.9	3	1	0	3	3	3	3	PAS	domain
PAS	PF00989.25	gi|410672264|ref|YP_006924635.1|	-	2.6e-10	40.3	0.0	4.3e-05	23.5	0.0	4.1	3	1	0	3	3	3	2	PAS	fold
PAS_3	PF08447.12	gi|410672264|ref|YP_006924635.1|	-	2.3e-09	37.4	2.4	0.00097	19.4	0.0	4.3	3	1	0	3	3	3	3	PAS	fold
PAS_10	PF13596.6	gi|410672264|ref|YP_006924635.1|	-	1.3e-08	35.3	0.0	0.0001	22.8	0.0	3.7	3	0	0	3	3	3	2	PAS	domain
GAF_2	PF13185.6	gi|410672264|ref|YP_006924635.1|	-	0.0011	19.2	0.0	0.23	11.7	0.0	2.6	2	0	0	2	2	2	1	GAF	domain
dCache_1	PF02743.18	gi|410672264|ref|YP_006924635.1|	-	0.0071	16.2	0.0	1.4	8.6	0.0	3.2	2	1	1	3	3	3	1	Cache	domain
CPL	PF08144.11	gi|410672264|ref|YP_006924635.1|	-	0.0077	16.6	1.3	0.019	15.3	0.1	2.3	2	0	0	2	2	2	1	CPL	(NUC119)	domain
PAS_7	PF12860.7	gi|410672264|ref|YP_006924635.1|	-	0.011	15.9	2.8	2	8.6	0.0	5.0	4	2	0	4	4	4	0	PAS	fold
HATPase_c_3	PF13589.6	gi|410672264|ref|YP_006924635.1|	-	0.012	15.5	0.2	0.027	14.3	0.2	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF	PF01590.26	gi|410672264|ref|YP_006924635.1|	-	0.042	14.5	0.0	1.7	9.2	0.0	2.6	2	0	0	2	2	2	0	GAF	domain
Cache_3-Cache_2	PF17201.4	gi|410672265|ref|YP_006924636.1|	-	2.8e-68	230.3	1.1	3.9e-68	229.9	1.1	1.2	1	0	0	1	1	1	1	Cache	3/Cache	2	fusion	domain
sCache_3_3	PF17202.4	gi|410672265|ref|YP_006924636.1|	-	2.2e-36	124.5	0.9	2.2e-36	124.5	0.9	2.4	2	0	0	2	2	2	1	Single	cache	domain	3
dCache_1	PF02743.18	gi|410672265|ref|YP_006924636.1|	-	5.8e-16	59.0	4.0	9.4e-16	58.3	4.0	1.5	1	0	0	1	1	1	1	Cache	domain
sCache_3_2	PF17203.4	gi|410672265|ref|YP_006924636.1|	-	6.4e-15	55.5	0.1	5.6e-12	46.0	0.1	2.4	1	1	1	2	2	2	2	Single	cache	domain	3
dCache_2	PF08269.11	gi|410672265|ref|YP_006924636.1|	-	1.5e-12	47.3	0.9	2.9e-12	46.4	0.9	1.4	1	0	0	1	1	1	1	Cache	domain
sCache_2	PF17200.4	gi|410672265|ref|YP_006924636.1|	-	1.3e-10	41.4	0.8	2.8e-10	40.3	0.8	1.5	1	0	0	1	1	1	1	Single	Cache	domain	2
DUF1430	PF07242.11	gi|410672265|ref|YP_006924636.1|	-	0.0082	16.4	2.6	0.01	16.0	0.1	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1430)
DUF4307	PF14155.6	gi|410672265|ref|YP_006924636.1|	-	0.11	12.4	0.3	4.4	7.2	0.0	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4307)
EzrA	PF06160.12	gi|410672265|ref|YP_006924636.1|	-	0.18	9.9	0.1	0.3	9.2	0.1	1.3	1	1	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
HTH_32	PF13565.6	gi|410672266|ref|YP_006924637.1|	-	1.1e-12	48.4	0.0	1.7e-12	47.8	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|410672266|ref|YP_006924637.1|	-	1.1e-08	35.0	0.0	2e-08	34.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_33	PF13592.6	gi|410672266|ref|YP_006924637.1|	-	1.8e-08	33.9	0.1	4e-08	32.8	0.1	1.7	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|410672266|ref|YP_006924637.1|	-	1.1e-06	28.2	0.1	4.9e-06	26.2	0.0	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|410672266|ref|YP_006924637.1|	-	0.00084	19.4	0.0	0.0019	18.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_ABP1_N	PF18107.1	gi|410672266|ref|YP_006924637.1|	-	0.003	17.2	0.1	0.0053	16.4	0.1	1.4	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
DDE_3	PF13358.6	gi|410672267|ref|YP_006924638.1|	-	6.1e-23	81.2	0.1	6.1e-23	81.2	0.1	1.4	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
DDE_1	PF03184.19	gi|410672267|ref|YP_006924638.1|	-	5.8e-08	32.6	0.3	7.7e-08	32.2	0.3	1.3	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|410672267|ref|YP_006924638.1|	-	1.2e-05	25.5	0.0	1.8e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	Integrase	core	domain
DDE_Tnp_ISAZ013	PF07592.11	gi|410672267|ref|YP_006924638.1|	-	0.0075	15.3	0.1	0.01	14.9	0.1	1.2	1	0	0	1	1	1	1	Rhodopirellula	transposase	DDE	domain
PAS_9	PF13426.7	gi|410672268|ref|YP_006924639.1|	-	0.0022	18.2	0.0	0.0023	18.1	0.0	1.1	1	0	0	1	1	1	1	PAS	domain
HATPase_c	PF02518.26	gi|410672269|ref|YP_006924640.1|	-	5.8e-31	107.3	0.2	1.1e-30	106.4	0.2	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|410672269|ref|YP_006924640.1|	-	1.3e-21	76.3	0.1	2.6e-21	75.4	0.1	1.5	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|410672269|ref|YP_006924640.1|	-	2.9e-10	40.4	0.0	6.2e-10	39.3	0.0	1.6	1	1	0	1	1	1	1	PAS	fold
HATPase_c_3	PF13589.6	gi|410672269|ref|YP_006924640.1|	-	0.00012	21.9	0.1	0.0004	20.2	0.0	1.9	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.6	gi|410672269|ref|YP_006924640.1|	-	0.00076	19.4	0.1	0.0018	18.1	0.1	1.6	1	0	0	1	1	1	1	GHKL	domain
PAS_10	PF13596.6	gi|410672269|ref|YP_006924640.1|	-	0.01	16.4	0.1	0.028	15.0	0.1	1.8	1	0	0	1	1	1	0	PAS	domain
sCache_3_3	PF17202.4	gi|410672269|ref|YP_006924640.1|	-	0.04	14.3	0.0	0.098	13.1	0.0	1.6	1	0	0	1	1	1	0	Single	cache	domain	3
PAS_9	PF13426.7	gi|410672269|ref|YP_006924640.1|	-	0.085	13.1	0.0	0.24	11.7	0.0	1.8	1	0	0	1	1	1	0	PAS	domain
DUF772	PF05598.11	gi|410672270|ref|YP_006924641.1|	-	3.9e-22	78.1	0.1	1e-21	76.7	0.0	1.7	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|410672270|ref|YP_006924641.1|	-	1.5e-14	54.2	0.1	2.9e-14	53.2	0.1	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_4	PF13359.6	gi|410672270|ref|YP_006924641.1|	-	0.00025	20.8	0.1	0.00045	19.9	0.1	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1_3	PF13612.6	gi|410672270|ref|YP_006924641.1|	-	0.00048	20.2	0.1	0.001	19.1	0.1	1.6	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|410672270|ref|YP_006924641.1|	-	0.036	14.3	0.2	0.069	13.4	0.2	1.4	1	0	0	1	1	1	0	Transposase	DDE	domain
Ribonuc_L-PSP	PF01042.21	gi|410672271|ref|YP_006924642.1|	-	3.7e-10	39.9	0.0	4.8e-10	39.5	0.0	1.2	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
TetR_N	PF00440.23	gi|410672272|ref|YP_006924643.1|	-	1e-08	34.9	0.0	1.6e-08	34.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
Terminase_5	PF06056.12	gi|410672272|ref|YP_006924643.1|	-	0.001	18.9	0.1	0.0039	17.1	0.1	2.0	1	1	0	1	1	1	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
Sigma70_r4_2	PF08281.12	gi|410672272|ref|YP_006924643.1|	-	0.003	17.2	0.1	0.0088	15.7	0.0	1.8	2	0	0	2	2	2	1	Sigma-70,	region	4
HDC	PF02329.16	gi|410672272|ref|YP_006924643.1|	-	0.0041	16.2	0.0	0.0048	16.0	0.0	1.1	1	0	0	1	1	1	1	Histidine	carboxylase	PI	chain
GerE	PF00196.19	gi|410672272|ref|YP_006924643.1|	-	0.1	12.1	0.0	0.2	11.2	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_23	PF13384.6	gi|410672273|ref|YP_006924644.1|	-	0.06	13.2	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF1638	PF07796.11	gi|410672274|ref|YP_006924645.1|	-	7.5e-39	133.4	0.0	1.1e-38	132.9	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1638)
SEFIR	PF08357.11	gi|410672274|ref|YP_006924645.1|	-	0.07	13.4	0.0	0.12	12.6	0.0	1.5	1	0	0	1	1	1	0	SEFIR	domain
AHJR-like	PF18743.1	gi|410672276|ref|YP_006924647.1|	-	0.019	14.5	0.0	0.065	12.8	0.0	1.8	1	1	0	1	1	1	0	REase_AHJR-like
HTH_24	PF13412.6	gi|410672276|ref|YP_006924647.1|	-	0.12	12.0	0.2	0.97	9.0	0.1	2.4	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
DUF2292	PF10055.9	gi|410672278|ref|YP_006924649.1|	-	0.12	12.0	1.2	0.19	11.4	0.1	1.8	2	0	0	2	2	2	0	Uncharacterized	small	protein	(DUF2292)
SPC12	PF06645.13	gi|410672278|ref|YP_006924649.1|	-	0.21	11.7	4.2	0.37	10.9	4.2	1.3	1	0	0	1	1	1	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
Herpes_BLLF1	PF05109.13	gi|410672279|ref|YP_006924650.1|	-	0.091	10.7	14.0	0.11	10.5	14.0	1.0	1	0	0	1	1	1	0	Herpes	virus	major	outer	envelope	glycoprotein	(BLLF1)
Apolipoprotein	PF01442.18	gi|410672279|ref|YP_006924650.1|	-	0.2	11.5	0.0	0.25	11.2	0.0	1.2	1	0	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
Tape_meas_lam_C	PF09718.10	gi|410672279|ref|YP_006924650.1|	-	0.57	10.3	11.5	4.6	7.4	11.0	2.3	1	1	0	1	1	1	0	Lambda	phage	tail	tape-measure	protein	(Tape_meas_lam_C)
Synuclein	PF01387.17	gi|410672279|ref|YP_006924650.1|	-	1.6	9.0	9.5	2	8.7	5.6	2.1	1	1	1	2	2	2	0	Synuclein
BES1_N	PF05687.13	gi|410672279|ref|YP_006924650.1|	-	9.5	6.6	11.3	17	5.8	11.3	1.4	1	0	0	1	1	1	0	BES1/BZR1	plant	transcription	factor,	N-terminal
HTH_32	PF13565.6	gi|410672280|ref|YP_006924651.1|	-	1e-12	48.4	0.0	1.7e-12	47.8	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_33	PF13592.6	gi|410672280|ref|YP_006924651.1|	-	2.2e-08	33.6	0.0	4.7e-08	32.6	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_29	PF13551.6	gi|410672280|ref|YP_006924651.1|	-	3.5e-08	33.4	0.0	6.8e-08	32.4	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|410672280|ref|YP_006924651.1|	-	2.7e-06	27.0	0.1	1.2e-05	24.9	0.0	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|410672280|ref|YP_006924651.1|	-	0.0016	18.5	0.0	0.0038	17.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_ABP1_N	PF18107.1	gi|410672280|ref|YP_006924651.1|	-	0.0031	17.2	0.1	0.0053	16.4	0.1	1.3	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
DDE_3	PF13358.6	gi|410672281|ref|YP_006924652.1|	-	6.1e-23	81.2	0.1	6.1e-23	81.2	0.1	1.4	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
DDE_1	PF03184.19	gi|410672281|ref|YP_006924652.1|	-	6e-08	32.5	0.2	7.4e-08	32.2	0.2	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|410672281|ref|YP_006924652.1|	-	1.2e-05	25.5	0.0	1.8e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	Integrase	core	domain
DDE_Tnp_ISAZ013	PF07592.11	gi|410672281|ref|YP_006924652.1|	-	0.0076	15.3	0.1	0.01	14.9	0.1	1.2	1	0	0	1	1	1	1	Rhodopirellula	transposase	DDE	domain
DUF3458_C	PF17432.2	gi|410672282|ref|YP_006924653.1|	-	2.6e-34	119.1	0.8	4.9e-34	118.2	0.8	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3458_C)	ARM	repeats
Peptidase_M1	PF01433.20	gi|410672282|ref|YP_006924653.1|	-	3.3e-25	88.9	0.2	2.8e-24	85.9	0.1	2.2	2	0	0	2	2	2	1	Peptidase	family	M1	domain
DUF3458	PF11940.8	gi|410672282|ref|YP_006924653.1|	-	2.5e-11	43.9	0.0	1e-10	41.9	0.0	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3458)	Ig-like	fold
Peptidase_M1_N	PF17900.1	gi|410672282|ref|YP_006924653.1|	-	3.5e-11	43.6	0.7	1.2e-10	41.9	0.1	2.1	2	0	0	2	2	2	1	Peptidase	M1	N-terminal	domain
Lectin_like	PF18560.1	gi|410672283|ref|YP_006924654.1|	-	4.5e-55	186.1	0.7	9.3e-55	185.1	0.7	1.6	1	0	0	1	1	1	1	Lectin	like	domain
NosD	PF05048.13	gi|410672283|ref|YP_006924654.1|	-	4.7e-30	104.6	25.0	1.3e-29	103.2	25.0	1.7	1	0	0	1	1	1	1	Periplasmic	copper-binding	protein	(NosD)
Peptidase_C1	PF00112.23	gi|410672283|ref|YP_006924654.1|	-	6.8e-25	88.4	0.1	1.3e-24	87.5	0.1	1.4	1	0	0	1	1	1	1	Papain	family	cysteine	protease
Beta_helix	PF13229.6	gi|410672283|ref|YP_006924654.1|	-	6.6e-10	39.1	27.4	6.6e-10	39.1	27.4	3.6	4	1	0	4	4	4	1	Right	handed	beta	helix	region
PKD	PF00801.20	gi|410672283|ref|YP_006924654.1|	-	5.8e-09	35.7	0.5	1.7e-08	34.2	0.5	1.9	1	0	0	1	1	1	1	PKD	domain
TIM	PF00121.18	gi|410672283|ref|YP_006924654.1|	-	0.018	14.4	0.1	0.03	13.7	0.1	1.2	1	0	0	1	1	1	0	Triosephosphate	isomerase
Peptidase_C1_2	PF03051.15	gi|410672283|ref|YP_006924654.1|	-	0.069	11.9	0.6	0.25	10.1	0.1	1.8	2	0	0	2	2	2	0	Peptidase	C1-like	family
DUF1565	PF07602.11	gi|410672283|ref|YP_006924654.1|	-	0.082	12.2	8.9	0.83	8.9	7.0	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1565)
Gly_reductase	PF09338.11	gi|410672283|ref|YP_006924654.1|	-	0.099	11.0	0.1	0.16	10.3	0.1	1.2	1	0	0	1	1	1	0	Glycine/sarcosine/betaine	reductase	component	B	subunits
Acetyltransf_1	PF00583.25	gi|410672284|ref|YP_006924655.1|	-	3.7e-16	59.4	0.0	4.8e-16	59.0	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|410672284|ref|YP_006924655.1|	-	2.3e-11	43.7	0.2	3.4e-11	43.2	0.2	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|410672284|ref|YP_006924655.1|	-	1.8e-10	41.1	0.0	3e-10	40.4	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|410672284|ref|YP_006924655.1|	-	6.4e-07	29.3	0.0	1.1e-06	28.5	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|410672284|ref|YP_006924655.1|	-	2.3e-05	24.5	0.0	3e-05	24.1	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|410672284|ref|YP_006924655.1|	-	3.9e-05	23.8	0.6	4.8e-05	23.5	0.6	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_15	PF17013.5	gi|410672284|ref|YP_006924655.1|	-	0.0021	17.6	0.9	0.0028	17.2	0.9	1.2	1	0	0	1	1	1	1	Putative	acetyl-transferase
Acetyltransf_3	PF13302.7	gi|410672284|ref|YP_006924655.1|	-	0.014	16.0	0.0	0.016	15.8	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_18	PF18014.1	gi|410672284|ref|YP_006924655.1|	-	0.05	13.4	0.0	11	5.9	0.0	2.2	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|410672284|ref|YP_006924655.1|	-	0.083	12.6	0.0	0.13	11.9	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
S-layer	PF07752.11	gi|410672285|ref|YP_006924656.1|	-	5.4e-202	668.0	27.4	2e-72	243.3	0.1	6.4	3	1	3	6	6	6	6	S-layer	protein
Peptidase_C25_C	PF03785.14	gi|410672285|ref|YP_006924656.1|	-	9.1	6.2	10.3	10	6.0	0.1	5.0	5	0	0	5	5	5	0	Peptidase	family	C25,	C	terminal	ig-like	domain
DUF2124	PF09897.9	gi|410672286|ref|YP_006924657.1|	-	4.7e-54	182.1	0.0	5.4e-54	181.9	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2124)
Met_10	PF02475.16	gi|410672287|ref|YP_006924658.1|	-	7.5e-63	211.9	0.1	1e-62	211.5	0.1	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
Trm5_N	PF18093.1	gi|410672287|ref|YP_006924658.1|	-	6.6e-11	41.9	0.1	1.4e-10	40.8	0.1	1.6	1	0	0	1	1	1	1	tRNA	methyltransferase	5	N-terminal	domain
TRM	PF02005.16	gi|410672287|ref|YP_006924658.1|	-	2.4e-05	23.7	0.0	3.3e-05	23.2	0.0	1.1	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
MTS	PF05175.14	gi|410672287|ref|YP_006924658.1|	-	0.00028	20.5	0.0	0.00042	19.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_18	PF12847.7	gi|410672287|ref|YP_006924658.1|	-	0.00068	19.6	0.0	0.032	14.1	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|410672287|ref|YP_006924658.1|	-	0.0014	18.2	0.0	0.0021	17.7	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Cons_hypoth95	PF03602.15	gi|410672287|ref|YP_006924658.1|	-	0.0091	15.6	0.0	0.015	15.0	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
GidB	PF02527.15	gi|410672287|ref|YP_006924658.1|	-	0.01	15.2	0.0	0.015	14.6	0.0	1.2	1	0	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
Methyltransf_25	PF13649.6	gi|410672287|ref|YP_006924658.1|	-	0.02	15.6	0.0	0.037	14.7	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
PrmA	PF06325.13	gi|410672287|ref|YP_006924658.1|	-	0.032	13.6	0.0	0.046	13.1	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
tRNA_U5-meth_tr	PF05958.11	gi|410672287|ref|YP_006924658.1|	-	0.035	13.1	0.0	0.05	12.6	0.0	1.1	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
Methyltransf_32	PF13679.6	gi|410672287|ref|YP_006924658.1|	-	0.11	12.5	0.0	0.21	11.6	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
HTH_5	PF01022.20	gi|410672288|ref|YP_006924659.1|	-	2.6e-10	40.0	0.0	4.4e-10	39.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|410672288|ref|YP_006924659.1|	-	7.1e-05	22.6	0.0	0.00011	22.0	0.0	1.2	1	0	0	1	1	1	1	MarR	family
V4R	PF02830.18	gi|410672288|ref|YP_006924659.1|	-	0.002	18.1	0.8	0.0036	17.3	0.8	1.5	1	0	0	1	1	1	1	V4R	domain
HTH_IclR	PF09339.10	gi|410672288|ref|YP_006924659.1|	-	0.006	16.4	0.0	0.011	15.6	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|410672288|ref|YP_006924659.1|	-	0.068	13.1	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_20	PF12840.7	gi|410672288|ref|YP_006924659.1|	-	0.083	13.0	0.0	0.18	11.9	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
DprA_WH	PF17782.1	gi|410672288|ref|YP_006924659.1|	-	0.25	11.5	0.0	0.42	10.8	0.0	1.3	1	0	0	1	1	1	0	DprA	winged	helix	domain
DUF2110	PF09883.9	gi|410672289|ref|YP_006924660.1|	-	1.3e-85	286.5	0.5	1.5e-85	286.4	0.5	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2110)
S1	PF00575.23	gi|410672289|ref|YP_006924660.1|	-	0.0041	17.4	0.1	0.012	16.0	0.1	1.8	1	0	0	1	1	1	1	S1	RNA	binding	domain
DUF3606	PF12244.8	gi|410672289|ref|YP_006924660.1|	-	0.14	12.1	0.0	0.76	9.7	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3606)
DUF3567	PF12091.8	gi|410672290|ref|YP_006924661.1|	-	0.00025	21.1	0.7	0.0077	16.3	0.1	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3567)
DUF4364	PF14277.6	gi|410672290|ref|YP_006924661.1|	-	0.0017	18.1	1.1	0.0029	17.4	1.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.6	gi|410672290|ref|YP_006924661.1|	-	0.0018	18.8	0.0	0.0031	18.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|410672290|ref|YP_006924661.1|	-	0.0035	17.3	0.1	0.0075	16.2	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix
CENP-F_leu_zip	PF10473.9	gi|410672290|ref|YP_006924661.1|	-	0.012	15.6	0.2	0.05	13.6	0.0	2.0	1	1	1	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
MarR	PF01047.22	gi|410672290|ref|YP_006924661.1|	-	0.059	13.3	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	MarR	family
TRM	PF02005.16	gi|410672291|ref|YP_006924662.1|	-	1.1e-101	340.8	0.0	1.3e-101	340.6	0.0	1.0	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
Cons_hypoth95	PF03602.15	gi|410672291|ref|YP_006924662.1|	-	0.0083	15.8	0.0	0.013	15.2	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Copper-bind	PF00127.20	gi|410672292|ref|YP_006924663.1|	-	0.001	19.4	0.4	0.011	16.1	0.1	2.4	1	1	1	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
Metallophos	PF00149.28	gi|410672293|ref|YP_006924664.1|	-	1.3e-20	74.8	0.0	1.7e-20	74.4	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|410672293|ref|YP_006924664.1|	-	1.1e-19	71.2	0.0	1.7e-19	70.6	0.0	1.3	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos_3	PF14582.6	gi|410672293|ref|YP_006924664.1|	-	2.3e-09	37.0	0.3	8.6e-07	28.5	0.1	2.9	1	1	1	2	2	2	2	Metallophosphoesterase,	calcineurin	superfamily
AIM24	PF01987.17	gi|410672294|ref|YP_006924665.1|	-	1.2e-69	234.2	0.3	1.4e-69	234.0	0.3	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
Aminotran_1_2	PF00155.21	gi|410672295|ref|YP_006924666.1|	-	5.6e-33	114.6	0.0	7.5e-33	114.2	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
zf-like	PF04071.12	gi|410672295|ref|YP_006924666.1|	-	1.1e-24	86.2	3.1	2.2e-24	85.2	3.1	1.4	1	0	0	1	1	1	1	Cysteine-rich	small	domain
Cys_Met_Meta_PP	PF01053.20	gi|410672295|ref|YP_006924666.1|	-	0.15	10.6	0.0	0.24	9.9	0.0	1.2	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
Fer4_10	PF13237.6	gi|410672295|ref|YP_006924666.1|	-	0.2	11.8	4.7	0.55	10.4	4.7	1.7	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Aminotran_1_2	PF00155.21	gi|410672296|ref|YP_006924667.1|	-	2.7e-49	168.3	0.0	3.4e-49	167.9	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
zf-like	PF04071.12	gi|410672296|ref|YP_006924667.1|	-	1.9e-24	85.4	7.0	5.4e-24	83.9	7.0	1.7	1	0	0	1	1	1	1	Cysteine-rich	small	domain
Cys_Met_Meta_PP	PF01053.20	gi|410672296|ref|YP_006924667.1|	-	0.022	13.3	0.0	0.034	12.7	0.0	1.2	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
CobD_Cbib	PF03186.13	gi|410672297|ref|YP_006924668.1|	-	5.5e-88	294.8	1.5	6.7e-88	294.5	1.5	1.1	1	0	0	1	1	1	1	CobD/Cbib	protein
PgpA	PF04608.13	gi|410672298|ref|YP_006924669.1|	-	4.3e-08	33.3	0.1	6.4e-08	32.7	0.1	1.3	1	0	0	1	1	1	1	Phosphatidylglycerophosphatase	A
CobS	PF02654.15	gi|410672299|ref|YP_006924670.1|	-	2.8e-37	128.9	18.1	3.3e-37	128.7	18.1	1.0	1	0	0	1	1	1	1	Cobalamin-5-phosphate	synthase
ThrE	PF06738.12	gi|410672299|ref|YP_006924670.1|	-	0.0075	15.7	1.5	0.0075	15.7	1.5	3.1	2	1	1	3	3	3	1	Putative	threonine/serine	exporter
Cellulose_synt	PF03552.14	gi|410672299|ref|YP_006924670.1|	-	0.048	12.2	0.1	0.076	11.5	0.1	1.2	1	0	0	1	1	1	0	Cellulose	synthase
PetG	PF02529.15	gi|410672299|ref|YP_006924670.1|	-	0.28	11.0	4.5	6.9	6.6	3.0	2.8	2	0	0	2	2	2	0	Cytochrome	B6-F	complex	subunit	5
DUF2085	PF09858.9	gi|410672299|ref|YP_006924670.1|	-	2.2	8.8	11.2	6.4	7.3	2.8	2.7	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2085)
NTP_transf_3	PF12804.7	gi|410672300|ref|YP_006924671.1|	-	1.1e-13	51.9	0.0	1.5e-13	51.4	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|410672300|ref|YP_006924671.1|	-	7.3e-09	35.7	0.0	1.1e-08	35.1	0.0	1.3	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CTP_transf_3	PF02348.19	gi|410672300|ref|YP_006924671.1|	-	0.0012	18.8	0.0	0.0019	18.1	0.0	1.3	1	1	0	1	1	1	1	Cytidylyltransferase
DUF2064	PF09837.9	gi|410672300|ref|YP_006924671.1|	-	0.097	12.5	0.0	0.14	12.0	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
NTP_transferase	PF00483.23	gi|410672300|ref|YP_006924671.1|	-	0.13	11.8	0.1	0.21	11.2	0.1	1.5	1	1	0	1	1	1	0	Nucleotidyl	transferase
Acetyltransf_1	PF00583.25	gi|410672302|ref|YP_006924673.1|	-	1.3e-17	64.1	0.0	1.7e-17	63.7	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|410672302|ref|YP_006924673.1|	-	1.1e-13	51.3	0.1	1.6e-13	50.8	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|410672302|ref|YP_006924673.1|	-	2.7e-10	40.3	0.0	4.1e-10	39.7	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|410672302|ref|YP_006924673.1|	-	2.9e-08	33.8	0.1	4e-08	33.4	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|410672302|ref|YP_006924673.1|	-	1.2e-07	31.6	0.0	2.2e-07	30.7	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_15	PF17013.5	gi|410672302|ref|YP_006924673.1|	-	8.6e-05	22.1	0.5	0.00026	20.5	0.5	1.5	1	1	1	2	2	2	1	Putative	acetyl-transferase
Acetyltransf_4	PF13420.7	gi|410672302|ref|YP_006924673.1|	-	0.00047	20.3	0.1	0.00061	20.0	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|410672302|ref|YP_006924673.1|	-	0.045	14.4	0.0	0.055	14.2	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|410672302|ref|YP_006924673.1|	-	0.051	13.7	0.0	0.091	12.9	0.0	1.4	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
DUF1801	PF08818.11	gi|410672303|ref|YP_006924674.1|	-	1.8e-07	31.5	0.0	2.2e-07	31.3	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DU1801)
DUF4096	PF13340.6	gi|410672304|ref|YP_006924675.1|	-	1.2e-05	25.4	0.1	1.9e-05	24.8	0.1	1.4	1	0	0	1	1	1	1	Putative	transposase	of	IS4/5	family	(DUF4096)
DUF1005	PF06219.12	gi|410672304|ref|YP_006924675.1|	-	0.038	13.0	0.1	0.042	12.9	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1005)
Na_H_Exchanger	PF00999.21	gi|410672305|ref|YP_006924676.1|	-	1.7e-52	178.5	50.6	2.2e-52	178.2	50.6	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
Usp	PF00582.26	gi|410672305|ref|YP_006924676.1|	-	3.4e-10	40.6	0.1	7.6e-10	39.5	0.0	1.5	2	0	0	2	2	2	1	Universal	stress	protein	family
MAGP	PF05507.11	gi|410672306|ref|YP_006924677.1|	-	0.023	15.1	0.6	0.025	15.0	0.6	1.1	1	0	0	1	1	1	0	Microfibril-associated	glycoprotein	(MAGP)
TRAP_alpha	PF03896.16	gi|410672306|ref|YP_006924677.1|	-	0.039	13.2	1.4	0.044	13.0	1.4	1.0	1	0	0	1	1	1	0	Translocon-associated	protein	(TRAP),	alpha	subunit
InvH	PF04741.12	gi|410672306|ref|YP_006924677.1|	-	0.044	13.7	0.0	0.046	13.6	0.0	1.1	1	0	0	1	1	1	0	InvH	outer	membrane	lipoprotein
FSAP_sig_propep	PF03032.15	gi|410672306|ref|YP_006924677.1|	-	0.046	13.8	0.5	0.095	12.8	0.5	1.7	1	1	0	1	1	1	0	Frog	skin	active	peptide	family	signal	and	propeptide
LPAM_1	PF08139.12	gi|410672306|ref|YP_006924677.1|	-	7.1	7.3	6.3	62	4.4	6.3	2.1	1	1	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
PvlArgDC	PF01862.16	gi|410672307|ref|YP_006924678.1|	-	3.3e-62	209.1	0.2	3.7e-62	208.9	0.2	1.0	1	0	0	1	1	1	1	Pyruvoyl-dependent	arginine	decarboxylase	(PvlArgDC)
IF3_N	PF05198.16	gi|410672307|ref|YP_006924678.1|	-	0.16	12.3	0.0	0.3	11.4	0.0	1.4	1	0	0	1	1	1	0	Translation	initiation	factor	IF-3,	N-terminal	domain
VWA_2	PF13519.6	gi|410672308|ref|YP_006924679.1|	-	1.9e-06	28.5	0.1	4.9e-06	27.2	0.1	1.8	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.28	gi|410672308|ref|YP_006924679.1|	-	4.9e-06	26.9	0.0	1e-05	25.8	0.0	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
CobT_C	PF11775.8	gi|410672308|ref|YP_006924679.1|	-	0.02	14.5	0.0	0.091	12.4	0.0	2.0	2	0	0	2	2	2	0	Cobalamin	biosynthesis	protein	CobT	VWA	domain
CbbQ_C	PF08406.10	gi|410672309|ref|YP_006924680.1|	-	1.8e-31	108.2	0.0	3.9e-31	107.2	0.0	1.6	1	0	0	1	1	1	1	CbbQ/NirQ/NorQ	C-terminal
AAA_5	PF07728.14	gi|410672309|ref|YP_006924680.1|	-	8.5e-31	106.8	0.0	1.3e-30	106.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|410672309|ref|YP_006924680.1|	-	0.0036	17.7	0.0	0.0056	17.1	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|410672309|ref|YP_006924680.1|	-	0.0036	17.6	0.0	0.0066	16.7	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_6	PF12774.7	gi|410672309|ref|YP_006924680.1|	-	0.0046	16.0	0.1	0.041	12.8	0.0	2.0	2	0	0	2	2	2	1	Hydrolytic	ATP	binding	site	of	dynein	motor	region
AAA_3	PF07726.11	gi|410672309|ref|YP_006924680.1|	-	0.01	15.7	0.0	0.016	15.1	0.0	1.3	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.22	gi|410672309|ref|YP_006924680.1|	-	0.039	14.3	0.0	0.068	13.6	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
AAA_14	PF13173.6	gi|410672309|ref|YP_006924680.1|	-	0.049	13.7	0.0	0.087	12.9	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
Sigma54_activat	PF00158.26	gi|410672309|ref|YP_006924680.1|	-	0.079	12.7	0.0	0.18	11.5	0.0	1.5	1	1	0	1	1	1	0	Sigma-54	interaction	domain
TsaE	PF02367.17	gi|410672309|ref|YP_006924680.1|	-	0.079	13.0	0.0	0.29	11.1	0.0	1.9	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NACHT	PF05729.12	gi|410672309|ref|YP_006924680.1|	-	0.18	11.7	0.0	0.38	10.7	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
PD40	PF07676.12	gi|410672310|ref|YP_006924681.1|	-	1e-07	31.7	9.0	0.95	9.5	0.0	7.2	7	1	0	7	7	7	4	WD40-like	Beta	Propeller	Repeat
FAINT	PF04385.15	gi|410672310|ref|YP_006924681.1|	-	0.00024	21.1	3.3	3.9	7.6	0.0	4.6	4	0	0	4	4	4	2	Domain	of	unknown	function,	DUF529
DPPIV_N	PF00930.21	gi|410672310|ref|YP_006924681.1|	-	0.00031	19.6	9.8	0.46	9.2	0.7	4.7	2	1	2	5	5	5	4	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Kelch_4	PF13418.6	gi|410672310|ref|YP_006924681.1|	-	0.05	13.6	0.1	1.5e+02	2.5	0.0	4.6	5	0	0	5	5	5	0	Galactose	oxidase,	central	domain
Kelch_3	PF13415.6	gi|410672310|ref|YP_006924681.1|	-	0.22	11.9	9.3	9	6.7	0.1	5.1	5	1	1	6	6	6	0	Galactose	oxidase,	central	domain
Cupin_2	PF07883.11	gi|410672311|ref|YP_006924682.1|	-	2.9e-07	30.1	0.0	3.8e-07	29.7	0.0	1.2	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|410672311|ref|YP_006924682.1|	-	4.8e-05	23.3	0.0	6.4e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
PIN_5	PF08745.11	gi|410672312|ref|YP_006924683.1|	-	0.082	12.3	0.2	0.17	11.3	0.2	1.5	1	0	0	1	1	1	0	PINc	domain	ribonuclease
DUF1027	PF06265.11	gi|410672312|ref|YP_006924683.1|	-	0.15	12.1	2.7	1.8	8.6	0.0	3.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1027)
AlbA_2	PF04326.14	gi|410672314|ref|YP_006924685.1|	-	2.9e-20	72.8	0.2	5.5e-20	71.9	0.2	1.5	1	0	0	1	1	1	1	Putative	DNA-binding	domain
DAGK_acc	PF00609.19	gi|410672314|ref|YP_006924685.1|	-	0.018	15.4	0.0	0.037	14.3	0.0	1.5	1	0	0	1	1	1	0	Diacylglycerol	kinase	accessory	domain
GSDH	PF07995.11	gi|410672315|ref|YP_006924686.1|	-	4.8e-92	308.8	0.1	6.4e-92	308.4	0.1	1.1	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
Reg_prop	PF07494.11	gi|410672315|ref|YP_006924686.1|	-	0.011	15.9	0.6	18	6.0	0.0	3.8	3	0	0	3	3	3	0	Two	component	regulator	propeller
NHL	PF01436.21	gi|410672315|ref|YP_006924686.1|	-	0.014	15.4	0.0	81	3.5	0.0	4.4	5	0	0	5	5	5	0	NHL	repeat
DEAD	PF00270.29	gi|410672316|ref|YP_006924687.1|	-	4.5e-26	91.7	0.0	8.9e-26	90.7	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
DUF1998	PF09369.10	gi|410672316|ref|YP_006924687.1|	-	8.6e-18	64.9	0.0	2.9e-17	63.2	0.0	2.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1998)
TPR_1	PF00515.28	gi|410672316|ref|YP_006924687.1|	-	1.1e-16	59.8	7.5	2.1e-08	33.6	0.1	3.7	3	0	0	3	3	3	3	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|410672316|ref|YP_006924687.1|	-	3.3e-16	58.0	3.3	1.6e-07	30.9	0.1	3.9	3	0	0	3	3	3	3	Tetratricopeptide	repeat
Helicase_C	PF00271.31	gi|410672316|ref|YP_006924687.1|	-	2.9e-12	46.9	0.1	1.1e-11	45.0	0.0	2.0	2	0	0	2	2	1	1	Helicase	conserved	C-terminal	domain
TPR_8	PF13181.6	gi|410672316|ref|YP_006924687.1|	-	2.1e-10	40.0	2.9	2.1e-05	24.4	0.1	4.0	3	0	0	3	3	3	2	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|410672316|ref|YP_006924687.1|	-	2.7e-08	33.8	0.2	0.00028	21.0	0.1	2.6	1	1	1	2	2	2	2	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|410672316|ref|YP_006924687.1|	-	8.1e-08	32.7	0.3	0.0018	18.7	0.0	2.6	2	0	0	2	2	2	2	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|410672316|ref|YP_006924687.1|	-	3.3e-07	30.6	0.5	0.012	16.3	0.0	3.9	1	1	2	3	3	3	2	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|410672316|ref|YP_006924687.1|	-	4e-07	29.6	4.2	0.00016	21.3	1.4	2.7	2	0	0	2	2	2	2	TPR	repeat
TPR_16	PF13432.6	gi|410672316|ref|YP_006924687.1|	-	8e-07	29.6	1.2	0.0099	16.5	0.1	3.1	2	1	1	3	3	3	2	Tetratricopeptide	repeat
ResIII	PF04851.15	gi|410672316|ref|YP_006924687.1|	-	4.5e-06	26.8	0.0	2e-05	24.6	0.0	2.0	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
TPR_12	PF13424.6	gi|410672316|ref|YP_006924687.1|	-	0.00016	21.9	3.0	0.00069	19.9	0.7	2.7	1	1	1	2	2	2	2	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|410672316|ref|YP_006924687.1|	-	0.00085	19.8	0.8	0.98	10.2	0.0	3.6	3	0	0	3	3	3	1	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|410672316|ref|YP_006924687.1|	-	0.00096	19.4	2.0	0.13	12.7	0.1	3.7	3	0	0	3	3	3	1	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|410672316|ref|YP_006924687.1|	-	0.031	14.3	5.2	2.5	8.3	0.1	4.4	3	1	1	4	4	4	0	Tetratricopeptide	repeat
TPR_15	PF13429.6	gi|410672316|ref|YP_006924687.1|	-	0.063	12.5	0.1	0.1	11.8	0.1	1.2	1	0	0	1	1	1	0	Tetratricopeptide	repeat
Fis1_TPR_C	PF14853.6	gi|410672316|ref|YP_006924687.1|	-	0.1	12.7	2.6	1.8	8.7	0.2	2.9	3	0	0	3	3	3	0	Fis1	C-terminal	tetratricopeptide	repeat
ANAPC3	PF12895.7	gi|410672316|ref|YP_006924687.1|	-	0.11	12.7	0.6	0.26	11.6	0.6	1.6	1	0	0	1	1	1	0	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_10	PF13374.6	gi|410672316|ref|YP_006924687.1|	-	0.54	10.2	7.2	2.7	8.0	0.3	3.4	3	0	0	3	3	3	0	Tetratricopeptide	repeat
FKBP_C	PF00254.28	gi|410672317|ref|YP_006924688.1|	-	0.0078	16.5	0.0	0.01	16.2	0.0	1.2	1	0	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
TrkA_C	PF02080.21	gi|410672317|ref|YP_006924688.1|	-	0.1	12.5	0.0	3.6	7.5	0.0	2.2	2	0	0	2	2	2	0	TrkA-C	domain
Phage_integrase	PF00589.22	gi|410672318|ref|YP_006924689.1|	-	6.5e-06	26.0	0.9	1.3e-05	25.1	0.1	1.9	2	1	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.6	gi|410672318|ref|YP_006924689.1|	-	0.032	14.7	0.3	3.5	8.1	0.0	3.3	3	0	0	3	3	3	0	Phage	integrase,	N-terminal	SAM-like	domain
Cons_hypoth95	PF03602.15	gi|410672318|ref|YP_006924689.1|	-	0.36	10.4	2.1	5.2	6.7	0.4	2.6	2	1	0	2	2	2	0	Conserved	hypothetical	protein	95
DUF3606	PF12244.8	gi|410672321|ref|YP_006924692.1|	-	0.049	13.6	0.1	0.062	13.2	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3606)
APG5	PF04106.12	gi|410672321|ref|YP_006924692.1|	-	0.12	11.9	0.1	0.13	11.8	0.1	1.0	1	0	0	1	1	1	0	Autophagy	protein	Apg5
Frankia_peptide	PF14407.6	gi|410672322|ref|YP_006924693.1|	-	0.0062	16.5	0.1	0.012	15.6	0.1	1.4	1	0	0	1	1	1	1	Ribosomally	synthesized	peptide	prototyped	by	Frankia	Franean1_4349.
D5_N	PF08706.11	gi|410672323|ref|YP_006924694.1|	-	1.6e-09	38.2	0.0	5.1e-09	36.6	0.0	1.9	1	1	0	1	1	1	1	D5	N	terminal	like
AAA_5	PF07728.14	gi|410672323|ref|YP_006924694.1|	-	3.2e-05	24.0	0.2	0.0045	17.0	0.0	3.1	3	0	0	3	3	3	1	AAA	domain	(dynein-related	subfamily)
ABC_tran	PF00005.27	gi|410672323|ref|YP_006924694.1|	-	0.00028	21.4	0.0	0.0024	18.4	0.0	2.2	2	0	0	2	2	2	1	ABC	transporter
AAA_22	PF13401.6	gi|410672323|ref|YP_006924694.1|	-	0.00072	19.8	0.0	0.0017	18.7	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|410672323|ref|YP_006924694.1|	-	0.0014	19.0	0.0	0.0029	18.0	0.0	1.6	1	0	0	1	1	1	1	AAA	ATPase	domain
Pox_D5	PF03288.16	gi|410672323|ref|YP_006924694.1|	-	0.002	18.6	0.1	0.0097	16.4	0.0	2.2	2	0	0	2	2	2	1	Poxvirus	D5	protein-like
AAA_33	PF13671.6	gi|410672323|ref|YP_006924694.1|	-	0.0046	17.1	0.0	0.0084	16.3	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|410672323|ref|YP_006924694.1|	-	0.0048	17.3	0.0	0.0093	16.4	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.6	gi|410672323|ref|YP_006924694.1|	-	0.014	15.9	0.1	0.057	14.0	0.0	2.0	2	1	1	3	3	2	0	AAA	domain
NACHT	PF05729.12	gi|410672323|ref|YP_006924694.1|	-	0.019	14.9	0.0	0.031	14.2	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
RNA_helicase	PF00910.22	gi|410672323|ref|YP_006924694.1|	-	0.02	15.3	0.0	0.055	13.9	0.0	1.8	1	0	0	1	1	1	0	RNA	helicase
Rad17	PF03215.15	gi|410672323|ref|YP_006924694.1|	-	0.022	14.7	0.0	0.038	13.9	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_29	PF13555.6	gi|410672323|ref|YP_006924694.1|	-	0.027	14.2	0.0	0.067	12.9	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|410672323|ref|YP_006924694.1|	-	0.034	13.8	0.0	0.078	12.7	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_17	PF13207.6	gi|410672323|ref|YP_006924694.1|	-	0.041	14.3	0.2	0.14	12.6	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.12	gi|410672323|ref|YP_006924694.1|	-	0.044	13.0	0.0	0.085	12.1	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
RsgA_GTPase	PF03193.16	gi|410672323|ref|YP_006924694.1|	-	0.066	13.1	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
Mg_chelatase	PF01078.21	gi|410672323|ref|YP_006924694.1|	-	0.073	12.4	0.1	0.13	11.6	0.1	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
MMR_HSR1	PF01926.23	gi|410672323|ref|YP_006924694.1|	-	0.085	12.9	0.0	0.17	12.0	0.0	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
T3SS_HrpK1	PF16937.5	gi|410672323|ref|YP_006924694.1|	-	0.11	12.1	0.0	0.19	11.4	0.0	1.2	1	0	0	1	1	1	0	Type	III	secretion	system	translocator	protein,	HrpF
Ploopntkinase3	PF18751.1	gi|410672323|ref|YP_006924694.1|	-	0.12	12.3	0.0	0.2	11.6	0.0	1.2	1	0	0	1	1	1	0	P-loop	Nucleotide	Kinase3
Viral_helicase1	PF01443.18	gi|410672323|ref|YP_006924694.1|	-	0.15	11.7	0.0	0.25	11.1	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
DUF494	PF04361.13	gi|410672325|ref|YP_006924696.1|	-	0.019	14.9	0.0	0.021	14.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF494)
Band_7_1	PF13421.6	gi|410672325|ref|YP_006924696.1|	-	0.095	12.4	0.0	0.1	12.3	0.0	1.1	1	0	0	1	1	1	0	SPFH	domain-Band	7	family
Glug	PF07581.12	gi|410672330|ref|YP_006924701.1|	-	3	8.4	9.5	3.1	8.4	0.6	3.6	3	0	0	3	3	3	0	The	GLUG	motif
DUF668	PF05003.12	gi|410672331|ref|YP_006924702.1|	-	0.03	14.8	0.2	0.079	13.4	0.1	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF668)
Spo7_2_N	PF15407.6	gi|410672331|ref|YP_006924702.1|	-	0.18	11.4	0.0	0.27	10.9	0.0	1.2	1	0	0	1	1	1	0	Sporulation	protein	family	7
DUF5367	PF17329.2	gi|410672332|ref|YP_006924703.1|	-	0.013	15.6	0.3	0.014	15.5	0.3	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5367)
DDE_3	PF13358.6	gi|410672334|ref|YP_006924705.1|	-	4.1e-25	88.3	0.7	1.2e-24	86.7	0.1	2.0	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|410672334|ref|YP_006924705.1|	-	2.6e-12	47.2	0.0	6.8e-12	45.8	0.0	1.8	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|410672334|ref|YP_006924705.1|	-	2.6e-08	33.8	0.0	6.6e-08	32.5	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_33	PF13592.6	gi|410672334|ref|YP_006924705.1|	-	4.4e-08	32.7	0.0	1.7e-07	30.8	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn	helix
DDE_1	PF03184.19	gi|410672334|ref|YP_006924705.1|	-	4.9e-07	29.6	1.5	5e-07	29.5	0.2	1.8	2	1	0	2	2	2	1	DDE	superfamily	endonuclease
HTH_23	PF13384.6	gi|410672334|ref|YP_006924705.1|	-	3.9e-06	26.5	0.2	1.6e-05	24.5	0.0	2.2	3	0	0	3	3	3	1	Homeodomain-like	domain
rve	PF00665.26	gi|410672334|ref|YP_006924705.1|	-	5.6e-05	23.3	0.0	0.00011	22.4	0.0	1.4	1	0	0	1	1	1	1	Integrase	core	domain
HTH_28	PF13518.6	gi|410672334|ref|YP_006924705.1|	-	0.0027	17.8	0.0	0.006	16.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_ABP1_N	PF18107.1	gi|410672334|ref|YP_006924705.1|	-	0.0084	15.8	0.1	0.018	14.8	0.1	1.5	1	0	0	1	1	1	1	Fission	yeast	centromere	protein	N-terminal	domain
DDE_Tnp_ISAZ013	PF07592.11	gi|410672334|ref|YP_006924705.1|	-	0.022	13.7	0.4	0.053	12.5	0.1	1.7	2	0	0	2	2	2	0	Rhodopirellula	transposase	DDE	domain
Lactamase_B	PF00753.27	gi|410672335|ref|YP_006924706.1|	-	3e-12	47.0	0.2	4.2e-12	46.5	0.2	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|410672335|ref|YP_006924706.1|	-	1.2e-07	31.5	0.2	1.6e-07	31.1	0.2	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|410672335|ref|YP_006924706.1|	-	0.0067	15.9	0.0	0.011	15.2	0.0	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|410672335|ref|YP_006924706.1|	-	0.018	14.9	1.1	0.053	13.4	1.1	1.7	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
DUF3006	PF11213.8	gi|410672336|ref|YP_006924707.1|	-	2.7e-19	69.2	1.0	3e-19	69.0	1.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3006)
CHS5_N	PF16892.5	gi|410672336|ref|YP_006924707.1|	-	0.00041	20.2	0.1	0.00054	19.9	0.1	1.2	1	0	0	1	1	1	1	Chitin	biosynthesis	protein	CHS5	N-terminus
Hypoth_Ymh	PF09509.10	gi|410672337|ref|YP_006924708.1|	-	5.2e-18	65.1	0.0	5.6e-18	65.0	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(Hypoth_ymh)
DUF1724	PF08350.10	gi|410672338|ref|YP_006924709.1|	-	2e-19	69.4	0.8	4.1e-19	68.5	0.8	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
MCRA	PF06100.11	gi|410672339|ref|YP_006924710.1|	-	1.1e-09	37.6	0.0	1.2e-09	37.5	0.0	1.0	1	0	0	1	1	1	1	MCRA	family
DUF1269	PF06897.12	gi|410672340|ref|YP_006924711.1|	-	5.3e-13	49.1	1.3	8.8e-13	48.4	0.7	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1269)
Gly-zipper_YMGG	PF13441.6	gi|410672340|ref|YP_006924711.1|	-	0.0039	16.9	9.1	0.0078	15.9	9.1	1.4	1	0	0	1	1	1	1	YMGG-like	Gly-zipper
Apolipoprotein	PF01442.18	gi|410672340|ref|YP_006924711.1|	-	0.0084	16.0	17.9	0.014	15.2	17.9	1.4	1	0	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
Bacteriocin_IIc	PF10439.9	gi|410672340|ref|YP_006924711.1|	-	0.013	15.5	9.3	0.023	14.8	9.3	1.4	1	0	0	1	1	1	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
DUF456	PF04306.13	gi|410672340|ref|YP_006924711.1|	-	0.025	14.9	3.8	0.04	14.2	3.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF456)
Gly-zipper_Omp	PF13488.6	gi|410672340|ref|YP_006924711.1|	-	0.088	12.8	12.3	0.17	11.9	12.3	1.4	1	0	0	1	1	1	0	Glycine	zipper
Gly-zipper_OmpA	PF13436.6	gi|410672340|ref|YP_006924711.1|	-	0.14	12.0	10.2	0.24	11.2	10.2	1.4	1	0	0	1	1	1	0	Glycine-zipper	domain
Sds3	PF08598.11	gi|410672340|ref|YP_006924711.1|	-	0.14	12.1	10.1	0.19	11.7	10.1	1.2	1	0	0	1	1	1	0	Sds3-like
DASH_Hsk3	PF08227.11	gi|410672340|ref|YP_006924711.1|	-	0.17	12.3	0.9	0.46	10.9	0.8	1.8	2	1	0	2	2	1	0	DASH	complex	subunit	Hsk3	like
Baculo_PEP_C	PF04513.12	gi|410672340|ref|YP_006924711.1|	-	0.26	11.3	4.5	0.31	11.1	2.1	2.0	2	0	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
GvpG	PF05120.12	gi|410672340|ref|YP_006924711.1|	-	0.32	11.0	6.3	0.62	10.1	6.3	1.6	1	0	0	1	1	1	0	Gas	vesicle	protein	G
DUF1664	PF07889.12	gi|410672340|ref|YP_006924711.1|	-	0.45	10.6	11.7	3	7.9	9.5	2.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF1640	PF07798.11	gi|410672340|ref|YP_006924711.1|	-	0.52	10.3	11.3	0.82	9.7	11.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1640)
PRKG1_interact	PF15898.5	gi|410672340|ref|YP_006924711.1|	-	0.86	10.5	15.6	5.6	7.9	11.6	2.2	1	1	1	2	2	2	0	cGMP-dependent	protein	kinase	interacting	domain
BshC	PF10079.9	gi|410672340|ref|YP_006924711.1|	-	0.99	8.1	12.0	1.3	7.7	12.0	1.1	1	0	0	1	1	1	0	Bacillithiol	biosynthesis	BshC
OmpH	PF03938.14	gi|410672340|ref|YP_006924711.1|	-	1.9	8.9	23.7	2.8	8.3	23.7	1.3	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
DUF4407	PF14362.6	gi|410672340|ref|YP_006924711.1|	-	1.9	7.8	18.7	2.7	7.2	18.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
YabA	PF06156.13	gi|410672340|ref|YP_006924711.1|	-	3.5	8.3	7.8	2.3	8.9	5.7	1.7	1	1	1	2	2	2	0	Initiation	control	protein	YabA
FUSC	PF04632.12	gi|410672340|ref|YP_006924711.1|	-	9.8	4.6	5.1	13	4.1	5.1	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF1724	PF08350.10	gi|410672343|ref|YP_006924714.1|	-	1.8e-17	63.2	1.6	4e-17	62.1	1.6	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
DUF5481	PF17578.2	gi|410672344|ref|YP_006924715.1|	-	0.043	14.2	0.2	0.15	12.5	0.2	1.8	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5481)
DpnII-MboI	PF18742.1	gi|410672345|ref|YP_006924716.1|	-	2.7e-55	186.1	0.5	5.4e-55	185.1	0.5	1.5	1	0	0	1	1	1	1	REase_DpnII-MboI
AbiTii	PF18864.1	gi|410672345|ref|YP_006924716.1|	-	1e-09	38.8	1.1	3.3e-09	37.1	0.9	2.0	1	1	1	2	2	2	1	AbiTii
SfsA	PF03749.13	gi|410672345|ref|YP_006924716.1|	-	0.033	14.1	0.0	0.062	13.2	0.0	1.4	1	0	0	1	1	1	0	Sugar	fermentation	stimulation	protein	RE	domain
Casein_kappa	PF00997.18	gi|410672345|ref|YP_006924716.1|	-	0.05	13.7	0.9	0.085	12.9	0.4	1.7	2	0	0	2	2	2	0	Kappa	casein
LAGLIDADG_WhiA	PF14527.6	gi|410672345|ref|YP_006924716.1|	-	0.088	12.9	0.6	0.27	11.3	0.6	1.8	1	0	0	1	1	1	0	WhiA	LAGLIDADG-like	domain
MazE_antitoxin	PF04014.18	gi|410672346|ref|YP_006924717.1|	-	0.07	13.1	0.0	0.072	13.1	0.0	1.2	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
RicinB_lectin_2	PF14200.6	gi|410672347|ref|YP_006924718.1|	-	1.8e-25	89.5	4.0	2.9e-18	66.4	0.3	4.2	2	1	1	3	3	3	2	Ricin-type	beta-trefoil	lectin	domain-like
Fascin	PF06268.13	gi|410672347|ref|YP_006924718.1|	-	6.8e-11	42.4	0.4	0.0018	18.4	0.0	4.5	2	2	2	4	4	4	4	Fascin	domain
FRG1	PF06229.12	gi|410672347|ref|YP_006924718.1|	-	2.9e-09	36.9	0.4	8.1e-06	25.7	0.1	2.4	1	1	1	2	2	2	2	FRG1-like	domain
Ricin_B_lectin	PF00652.22	gi|410672347|ref|YP_006924718.1|	-	1.9e-06	28.2	0.2	7.5e-06	26.2	0.2	1.8	1	1	0	1	1	1	1	Ricin-type	beta-trefoil	lectin	domain
FidL_like	PF15941.5	gi|410672348|ref|YP_006924719.1|	-	0.15	12.6	2.1	9	6.8	0.5	2.4	2	0	0	2	2	2	0	FidL-like	putative	membrane	protein
MS_channel	PF00924.18	gi|410672349|ref|YP_006924720.1|	-	1.2e-37	129.5	0.3	2e-37	128.8	0.3	1.3	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
Aa_trans	PF01490.18	gi|410672349|ref|YP_006924720.1|	-	0.023	13.4	6.2	0.031	13.0	6.2	1.1	1	0	0	1	1	1	0	Transmembrane	amino	acid	transporter	protein
ECSCR	PF15820.5	gi|410672349|ref|YP_006924720.1|	-	0.072	12.9	2.2	0.16	11.8	2.2	1.6	1	0	0	1	1	1	0	Endothelial	cell-specific	chemotaxis	regulator
SNARE_assoc	PF09335.11	gi|410672351|ref|YP_006924722.1|	-	0.0026	18.2	0.1	0.0029	18.1	0.1	1.0	1	0	0	1	1	1	1	SNARE	associated	Golgi	protein
DUF1724	PF08350.10	gi|410672352|ref|YP_006924723.1|	-	3.8e-21	75.0	1.2	9.3e-21	73.7	0.3	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1724)
Radical_SAM	PF04055.21	gi|410672353|ref|YP_006924724.1|	-	3.5e-22	79.6	0.0	8.6e-22	78.3	0.0	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
zf-ribbon_3	PF13248.6	gi|410672353|ref|YP_006924724.1|	-	0.012	15.0	6.9	0.87	9.1	0.0	3.1	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|410672353|ref|YP_006924724.1|	-	0.024	14.4	2.8	2.9	7.7	0.1	2.8	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Fer4_12	PF13353.6	gi|410672353|ref|YP_006924724.1|	-	0.038	14.2	0.0	0.038	14.2	0.0	2.0	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
zinc_ribbon_2	PF13240.6	gi|410672353|ref|YP_006924724.1|	-	0.88	9.4	9.2	3.8	7.4	0.1	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
Laminin_G_3	PF13385.6	gi|410672355|ref|YP_006924726.1|	-	1.3e-28	100.1	4.2	1.3e-28	100.1	4.2	2.9	2	1	0	2	2	2	1	Concanavalin	A-like	lectin/glucanases	superfamily
PKD	PF00801.20	gi|410672355|ref|YP_006924726.1|	-	3.2e-17	62.1	5.2	6.5e-17	61.1	2.7	2.7	2	0	0	2	2	2	1	PKD	domain
Pilin_N	PF07790.11	gi|410672355|ref|YP_006924726.1|	-	7.9e-17	62.0	3.8	9.1e-17	61.8	1.0	2.5	2	0	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
DUF5011	PF16403.5	gi|410672355|ref|YP_006924726.1|	-	1.4e-05	25.1	0.9	5.3e-05	23.3	0.1	2.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF5011)
ChitinaseA_N	PF08329.10	gi|410672355|ref|YP_006924726.1|	-	0.00089	18.9	0.0	0.0022	17.6	0.0	1.6	1	0	0	1	1	1	1	Chitinase	A,	N-terminal	domain
Y_Y_Y	PF07495.13	gi|410672355|ref|YP_006924726.1|	-	0.017	15.0	0.4	0.096	12.7	0.0	2.5	2	0	0	2	2	2	0	Y_Y_Y	domain
DUF4625	PF15418.6	gi|410672355|ref|YP_006924726.1|	-	0.071	13.4	1.0	0.16	12.2	0.0	2.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4625)
DUF4453	PF14627.6	gi|410672355|ref|YP_006924726.1|	-	0.084	13.0	1.8	1.7	8.8	0.1	3.3	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4453)
Rib	PF08428.10	gi|410672355|ref|YP_006924726.1|	-	0.11	12.5	4.4	0.17	11.9	2.4	2.3	2	0	0	2	2	2	0	Rib/alpha-like	repeat
Laminin_G_2	PF02210.24	gi|410672355|ref|YP_006924726.1|	-	0.2	12.3	3.1	1.4	9.5	0.1	3.2	4	0	0	4	4	3	0	Laminin	G	domain
DUF4307	PF14155.6	gi|410672355|ref|YP_006924726.1|	-	0.28	11.0	1.3	7.4	6.5	0.5	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4307)
BACON	PF13004.7	gi|410672355|ref|YP_006924726.1|	-	0.4	10.7	5.0	0.1	12.6	0.5	2.5	2	0	0	2	2	2	0	Putative	binding	domain,	N-terminal
He_PIG	PF05345.12	gi|410672355|ref|YP_006924726.1|	-	0.46	10.7	7.4	0.12	12.6	0.9	3.2	3	0	0	3	3	2	0	Putative	Ig	domain
Cadherin_4	PF17803.1	gi|410672355|ref|YP_006924726.1|	-	4.3	8.0	13.8	0.3	11.7	4.9	3.5	3	1	0	3	3	3	0	Bacterial	cadherin-like	domain
T2SSF	PF00482.23	gi|410672356|ref|YP_006924727.1|	-	2e-31	108.6	11.6	6.4e-17	61.7	0.0	3.2	3	0	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
DUF2207	PF09972.9	gi|410672356|ref|YP_006924727.1|	-	0.97	8.1	18.6	0.083	11.6	0.5	3.4	4	0	0	4	4	4	0	Predicted	membrane	protein	(DUF2207)
T2SSE	PF00437.20	gi|410672357|ref|YP_006924728.1|	-	9.7e-44	149.5	0.0	1.4e-43	148.9	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
Arginosuc_synth	PF00764.19	gi|410672357|ref|YP_006924728.1|	-	0.13	11.5	0.0	0.2	10.9	0.0	1.1	1	0	0	1	1	1	0	Arginosuccinate	synthase
AAA_23	PF13476.6	gi|410672357|ref|YP_006924728.1|	-	0.34	11.4	1.0	0.51	10.8	0.2	1.7	2	0	0	2	2	2	0	AAA	domain
PfkB	PF00294.24	gi|410672358|ref|YP_006924729.1|	-	2.6e-51	174.7	0.0	3.4e-51	174.4	0.0	1.1	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
DUF555	PF04475.12	gi|410672359|ref|YP_006924730.1|	-	6.1e-48	161.3	0.0	7.2e-48	161.1	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF555)
RuvX	PF03652.15	gi|410672359|ref|YP_006924730.1|	-	0.082	13.3	0.0	0.2	12.0	0.0	1.5	1	1	0	1	1	1	0	Holliday	junction	resolvase
DUF357	PF04010.13	gi|410672360|ref|YP_006924731.1|	-	7.9e-30	102.8	0.3	9.2e-30	102.5	0.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF357)
DUF87	PF01935.17	gi|410672361|ref|YP_006924732.1|	-	3.3e-38	132.0	0.0	6.2e-38	131.1	0.0	1.5	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
HAS-barrel	PF09378.10	gi|410672361|ref|YP_006924732.1|	-	4.9e-05	23.4	0.1	0.00016	21.7	0.1	1.9	1	0	0	1	1	1	1	HAS	barrel	domain
TrwB_AAD_bind	PF10412.9	gi|410672361|ref|YP_006924732.1|	-	0.0027	16.7	0.0	0.12	11.2	0.0	2.2	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF853	PF05872.12	gi|410672361|ref|YP_006924732.1|	-	0.0028	16.3	0.0	0.23	10.0	0.0	2.1	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
AAA_10	PF12846.7	gi|410672361|ref|YP_006924732.1|	-	0.0047	15.9	0.0	0.02	13.9	0.0	1.9	2	0	0	2	2	2	1	AAA-like	domain
ResIII	PF04851.15	gi|410672361|ref|YP_006924732.1|	-	0.055	13.5	0.0	0.17	11.9	0.0	1.8	2	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_22	PF13401.6	gi|410672361|ref|YP_006924732.1|	-	0.061	13.6	0.1	2.9	8.2	0.0	2.8	3	0	0	3	3	3	0	AAA	domain
TP_methylase	PF00590.20	gi|410672362|ref|YP_006924733.1|	-	1.2e-17	64.6	0.0	1.6e-17	64.2	0.0	1.2	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Cpn60_TCP1	PF00118.24	gi|410672363|ref|YP_006924734.1|	-	5.8e-165	549.6	17.1	6.7e-165	549.4	17.1	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Alba	PF01918.21	gi|410672363|ref|YP_006924734.1|	-	0.13	12.1	0.1	0.76	9.6	0.0	2.2	2	0	0	2	2	2	0	Alba
Kelch_4	PF13418.6	gi|410672364|ref|YP_006924735.1|	-	3.5e-21	74.9	14.4	3.5e-05	23.7	0.0	4.5	4	0	0	4	4	4	4	Galactose	oxidase,	central	domain
Kelch_5	PF13854.6	gi|410672364|ref|YP_006924735.1|	-	3.4e-17	62.0	1.7	0.0051	16.8	0.0	4.5	4	0	0	4	4	4	4	Kelch	motif
Kelch_6	PF13964.6	gi|410672364|ref|YP_006924735.1|	-	1.2e-15	57.1	8.3	0.0052	17.0	0.2	4.7	5	0	0	5	5	5	4	Kelch	motif
PKD	PF00801.20	gi|410672364|ref|YP_006924735.1|	-	1e-10	41.3	5.5	1.3e-05	25.0	0.0	3.8	3	0	0	3	3	3	3	PKD	domain
Kelch_2	PF07646.15	gi|410672364|ref|YP_006924735.1|	-	1.2e-10	40.9	17.1	0.032	14.2	0.2	5.0	5	0	0	5	5	5	4	Kelch	motif
Glyoxal_oxid_N	PF07250.11	gi|410672364|ref|YP_006924735.1|	-	6.5e-09	35.3	2.1	0.00085	18.6	0.3	2.6	1	1	0	2	2	2	2	Glyoxal	oxidase	N-terminus
BNR_2	PF13088.6	gi|410672364|ref|YP_006924735.1|	-	5.9e-07	29.1	3.8	8.6e-07	28.5	3.8	1.2	1	0	0	1	1	1	1	BNR	repeat-like	domain
Kelch_3	PF13415.6	gi|410672364|ref|YP_006924735.1|	-	1.6e-06	28.2	25.2	0.0017	18.6	1.4	5.2	5	0	0	5	5	5	3	Galactose	oxidase,	central	domain
Kelch_1	PF01344.25	gi|410672364|ref|YP_006924735.1|	-	2.1e-05	24.0	5.5	1.2	8.7	0.0	4.9	4	1	0	4	4	4	2	Kelch	motif
Sortilin-Vps10	PF15902.5	gi|410672364|ref|YP_006924735.1|	-	4e-05	22.6	2.0	0.00015	20.7	1.9	1.8	1	1	0	1	1	1	1	Sortilin,	neurotensin	receptor	3,
BNR	PF02012.20	gi|410672364|ref|YP_006924735.1|	-	0.0051	16.6	13.7	0.28	11.4	0.7	3.9	3	0	0	3	3	3	2	BNR/Asp-box	repeat
DUF5122	PF17164.4	gi|410672364|ref|YP_006924735.1|	-	0.016	15.5	7.0	24	5.3	0.0	4.8	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF5122)	beta-propeller
MobB	PF03205.14	gi|410672364|ref|YP_006924735.1|	-	0.1	12.5	0.3	25	4.7	0.0	3.5	4	0	0	4	4	4	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Kelch_4	PF13418.6	gi|410672365|ref|YP_006924736.1|	-	9.2e-31	105.6	13.9	3.6e-06	26.9	0.5	6.3	6	0	0	6	6	6	5	Galactose	oxidase,	central	domain
Kelch_6	PF13964.6	gi|410672365|ref|YP_006924736.1|	-	1.4e-30	104.5	11.2	0.00017	21.7	0.0	6.1	6	0	0	6	6	6	5	Kelch	motif
Kelch_5	PF13854.6	gi|410672365|ref|YP_006924736.1|	-	3.3e-17	62.1	3.0	0.0061	16.5	0.0	5.4	5	0	0	5	5	5	5	Kelch	motif
Kelch_2	PF07646.15	gi|410672365|ref|YP_006924736.1|	-	8.6e-16	57.2	16.0	0.015	15.3	0.0	6.1	6	0	0	6	6	6	5	Kelch	motif
Kelch_3	PF13415.6	gi|410672365|ref|YP_006924736.1|	-	5.2e-14	52.1	37.5	0.014	15.7	1.9	6.1	6	0	0	6	6	6	5	Galactose	oxidase,	central	domain
BNR_2	PF13088.6	gi|410672365|ref|YP_006924736.1|	-	2.3e-12	46.8	20.5	4.1e-05	23.0	4.8	3.6	1	1	3	4	4	4	4	BNR	repeat-like	domain
Kelch_1	PF01344.25	gi|410672365|ref|YP_006924736.1|	-	1.5e-11	43.6	18.2	0.26	10.9	0.1	6.9	6	0	0	6	6	6	5	Kelch	motif
Sortilin-Vps10	PF15902.5	gi|410672365|ref|YP_006924736.1|	-	3.9e-11	42.4	10.6	4.7e-06	25.7	2.3	2.6	1	1	0	2	2	2	2	Sortilin,	neurotensin	receptor	3,
Glyoxal_oxid_N	PF07250.11	gi|410672365|ref|YP_006924736.1|	-	4.6e-11	42.4	5.4	0.00032	20.0	0.2	3.6	1	1	4	5	5	5	5	Glyoxal	oxidase	N-terminus
Secretin	PF00263.21	gi|410672365|ref|YP_006924736.1|	-	3.9e-10	39.6	0.0	2.3	7.8	0.0	5.0	1	1	4	5	5	5	3	Bacterial	type	II	and	III	secretion	system	protein
BNR_6	PF15899.5	gi|410672365|ref|YP_006924736.1|	-	5e-10	38.5	9.0	3	8.2	0.0	6.0	6	0	0	6	6	6	4	BNR-Asp	box	repeat
DUF4185	PF13810.6	gi|410672365|ref|YP_006924736.1|	-	5.6e-09	35.7	24.5	0.18	11.0	0.3	5.1	1	1	4	5	5	5	5	Domain	of	unknown	function	(DUF4185)
DUF5122	PF17164.4	gi|410672365|ref|YP_006924736.1|	-	3.9e-06	27.1	0.7	11	6.4	0.2	5.6	5	0	0	5	5	5	0	Domain	of	unknown	function	(DUF5122)	beta-propeller
BNR	PF02012.20	gi|410672365|ref|YP_006924736.1|	-	2.4e-05	23.7	27.7	0.27	11.4	1.0	6.4	6	0	0	6	6	5	5	BNR/Asp-box	repeat
MobB	PF03205.14	gi|410672365|ref|YP_006924736.1|	-	9.9e-05	22.2	5.5	40	4.1	0.0	5.3	5	1	0	5	5	5	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
YjbF	PF11102.8	gi|410672365|ref|YP_006924736.1|	-	0.00079	19.3	3.6	41	3.9	0.0	5.4	6	0	0	6	6	6	0	Group	4	capsule	polysaccharide	lipoprotein	gfcB,	YjbF
HNOB	PF07700.15	gi|410672365|ref|YP_006924736.1|	-	0.0064	16.5	0.0	14	5.6	0.0	3.3	1	1	3	4	4	4	0	Haem-NO-binding
B3R	PF17057.5	gi|410672365|ref|YP_006924736.1|	-	0.011	16.0	1.1	1.8e+02	2.3	0.0	4.7	5	0	0	5	5	5	0	Poxviridae	B3	protein
Nuc_N	PF14448.6	gi|410672365|ref|YP_006924736.1|	-	0.013	15.3	2.0	1e+02	2.9	0.0	4.6	5	0	0	5	5	5	0	Nuclease	N	terminal
Endomucin	PF07010.12	gi|410672365|ref|YP_006924736.1|	-	0.21	11.5	7.5	7.7	6.4	0.9	3.2	1	1	2	3	3	3	0	Endomucin
DUF588	PF04535.12	gi|410672365|ref|YP_006924736.1|	-	0.29	10.9	1.9	1.5e+02	2.1	0.0	3.9	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF588)
Mso1_C	PF14477.6	gi|410672365|ref|YP_006924736.1|	-	1	9.8	19.1	27	5.2	0.5	4.8	5	0	0	5	5	5	0	Membrane-polarising	domain	of	Mso1
Kelch_4	PF13418.6	gi|410672366|ref|YP_006924737.1|	-	2.3e-59	197.2	77.2	4.8e-05	23.3	0.6	15.4	15	0	0	15	15	15	15	Galactose	oxidase,	central	domain
Kelch_6	PF13964.6	gi|410672366|ref|YP_006924737.1|	-	4.2e-56	185.5	55.2	0.0013	19.0	0.2	15.4	15	0	0	15	15	15	15	Kelch	motif
Sortilin-Vps10	PF15902.5	gi|410672366|ref|YP_006924737.1|	-	6.4e-52	176.8	59.6	7.6e-09	34.9	0.4	6.5	1	1	8	9	9	9	9	Sortilin,	neurotensin	receptor	3,
Kelch_5	PF13854.6	gi|410672366|ref|YP_006924737.1|	-	1.1e-41	140.2	56.4	0.0072	16.3	0.3	15.5	16	0	0	16	16	16	10	Kelch	motif
Glyoxal_oxid_N	PF07250.11	gi|410672366|ref|YP_006924737.1|	-	1.1e-30	106.7	39.0	0.00049	19.4	0.4	8.1	1	1	6	8	8	8	7	Glyoxal	oxidase	N-terminus
BNR_2	PF13088.6	gi|410672366|ref|YP_006924737.1|	-	7e-30	104.3	54.4	2e-07	30.6	10.1	5.5	1	1	5	6	6	6	6	BNR	repeat-like	domain
Kelch_2	PF07646.15	gi|410672366|ref|YP_006924737.1|	-	1.5e-28	97.7	67.2	0.027	14.5	0.5	15.7	15	0	0	15	15	15	14	Kelch	motif
Secretin	PF00263.21	gi|410672366|ref|YP_006924737.1|	-	1.1e-23	83.7	2.8	4.9	6.8	0.0	14.5	1	1	14	15	15	15	6	Bacterial	type	II	and	III	secretion	system	protein
BNR_6	PF15899.5	gi|410672366|ref|YP_006924737.1|	-	3.2e-21	73.2	20.3	9.7	6.6	0.0	14.3	14	0	0	14	14	14	1	BNR-Asp	box	repeat
DUF4185	PF13810.6	gi|410672366|ref|YP_006924737.1|	-	7.1e-21	74.8	72.9	0.14	11.3	0.4	14.2	1	1	13	14	14	14	14	Domain	of	unknown	function	(DUF4185)
BNR	PF02012.20	gi|410672366|ref|YP_006924737.1|	-	2.8e-18	62.9	100.3	0.88	9.8	1.0	15.5	14	0	0	14	14	14	13	BNR/Asp-box	repeat
Kelch_1	PF01344.25	gi|410672366|ref|YP_006924737.1|	-	8.5e-16	57.3	69.0	0.26	10.9	0.2	16.2	15	0	0	15	15	15	9	Kelch	motif
Lgl_C	PF08596.10	gi|410672366|ref|YP_006924737.1|	-	7.8e-09	34.7	1.0	45	2.6	0.0	10.8	1	1	14	15	15	15	0	Lethal	giant	larvae(Lgl)	like,	C-terminal
PKD	PF00801.20	gi|410672366|ref|YP_006924737.1|	-	2.1e-07	30.7	6.9	5.6e-05	22.9	0.3	4.0	2	0	0	2	2	2	2	PKD	domain
PKD	PF00801.20	gi|410672367|ref|YP_006924738.1|	-	6.2e-55	183.0	60.3	2.6e-12	46.4	6.2	6.2	6	0	0	6	6	6	6	PKD	domain
PKD_3	PF16820.5	gi|410672367|ref|YP_006924738.1|	-	0.00018	21.2	21.3	0.54	10.0	0.3	5.9	7	0	0	7	7	7	4	PKD-like	domain
HA1	PF18239.1	gi|410672367|ref|YP_006924738.1|	-	0.00069	19.4	5.1	9.9	6.1	0.0	5.0	1	1	3	5	5	5	2	Hemagglutinin	I
Chitin_synth_1	PF01644.17	gi|410672367|ref|YP_006924738.1|	-	0.0012	18.9	0.1	1.5	8.8	0.0	3.1	2	1	1	3	3	3	2	Chitin	synthase
MG2	PF01835.19	gi|410672367|ref|YP_006924738.1|	-	0.89	10.1	10.3	7.2	7.1	0.1	4.6	2	2	3	5	5	5	0	MG2	domain
vWF_A	PF12450.8	gi|410672367|ref|YP_006924738.1|	-	1.4	8.9	9.9	41	4.2	0.1	4.3	4	0	0	4	4	4	0	von	Willebrand	factor
MBG	PF17883.1	gi|410672367|ref|YP_006924738.1|	-	3.9	8.1	45.1	1.8	9.2	5.5	5.7	2	1	3	5	5	5	0	MBG	domain
DUF4605	PF15378.6	gi|410672368|ref|YP_006924739.1|	-	0.074	12.9	0.3	0.12	12.2	0.3	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4605)
DUF2119	PF09892.9	gi|410672369|ref|YP_006924740.1|	-	2.5e-69	232.4	0.0	3e-69	232.2	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2119)
YgaB	PF14182.6	gi|410672369|ref|YP_006924740.1|	-	0.013	15.9	0.1	0.024	15.0	0.1	1.4	1	0	0	1	1	1	0	YgaB-like	protein
S4	PF01479.25	gi|410672370|ref|YP_006924741.1|	-	3.8e-11	42.5	0.0	8.3e-11	41.4	0.0	1.6	1	0	0	1	1	1	1	S4	domain
FtsJ	PF01728.19	gi|410672370|ref|YP_006924741.1|	-	1.6e-07	31.6	0.0	4e-07	30.3	0.0	1.7	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
Fibrillarin	PF01269.17	gi|410672370|ref|YP_006924741.1|	-	1.1e-06	28.0	0.0	1.4e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	Fibrillarin
Methyltransf_11	PF08241.12	gi|410672370|ref|YP_006924741.1|	-	3.9e-06	27.4	0.0	5.8e-06	26.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|410672370|ref|YP_006924741.1|	-	1.8e-05	25.4	0.0	2.5e-05	24.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|410672370|ref|YP_006924741.1|	-	4e-05	23.5	0.0	5.5e-05	23.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|410672370|ref|YP_006924741.1|	-	0.0012	19.5	0.0	0.0017	19.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.6	gi|410672370|ref|YP_006924741.1|	-	0.0022	19.0	0.0	0.0073	17.3	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|410672370|ref|YP_006924741.1|	-	0.0081	16.0	0.0	0.011	15.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
S4_2	PF13275.6	gi|410672370|ref|YP_006924741.1|	-	0.01	15.6	0.1	0.019	14.8	0.1	1.5	1	0	0	1	1	1	0	S4	domain
Methyltransf_8	PF05148.15	gi|410672370|ref|YP_006924741.1|	-	0.068	13.0	0.0	0.091	12.6	0.0	1.2	1	0	0	1	1	1	0	Hypothetical	methyltransferase
Na_H_Exchanger	PF00999.21	gi|410672371|ref|YP_006924742.1|	-	8.8e-37	126.8	25.7	1e-36	126.5	25.7	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
HAD_2	PF13419.6	gi|410672372|ref|YP_006924743.1|	-	4.3e-28	98.6	0.1	5.1e-28	98.4	0.1	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|410672372|ref|YP_006924743.1|	-	3.6e-16	60.1	0.1	6.3e-16	59.3	0.1	1.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|410672372|ref|YP_006924743.1|	-	0.0016	18.9	0.0	0.0075	16.7	0.0	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
NT5C	PF06941.12	gi|410672372|ref|YP_006924743.1|	-	0.044	13.6	0.1	0.25	11.2	0.1	2.0	1	1	0	1	1	1	0	5'	nucleotidase,	deoxy	(Pyrimidine),	cytosolic	type	C	protein	(NT5C)
Hydrolase_like	PF13242.6	gi|410672372|ref|YP_006924743.1|	-	0.077	13.1	0.0	0.14	12.2	0.0	1.5	1	0	0	1	1	1	0	HAD-hyrolase-like
Oxidored_FMN	PF00724.20	gi|410672373|ref|YP_006924744.1|	-	2.2e-56	191.6	0.0	2.5e-56	191.4	0.0	1.0	1	0	0	1	1	1	1	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
His_biosynth	PF00977.21	gi|410672373|ref|YP_006924744.1|	-	0.0028	17.2	0.0	0.014	14.9	0.0	2.0	2	1	0	2	2	2	1	Histidine	biosynthesis	protein
Dus	PF01207.17	gi|410672373|ref|YP_006924744.1|	-	0.0052	15.9	0.2	0.033	13.3	0.0	1.9	2	0	0	2	2	2	1	Dihydrouridine	synthase	(Dus)
HMGL-like	PF00682.19	gi|410672373|ref|YP_006924744.1|	-	0.15	11.6	0.0	1.6	8.2	0.0	2.0	2	0	0	2	2	2	0	HMGL-like
BKACE	PF05853.12	gi|410672373|ref|YP_006924744.1|	-	0.19	11.0	0.2	3.6	6.8	0.0	2.0	1	1	0	1	1	1	0	beta-keto	acid	cleavage	enzyme
Cytochrom_C_asm	PF01578.20	gi|410672374|ref|YP_006924745.1|	-	1.2e-26	93.8	17.7	1.2e-26	93.8	17.7	1.9	2	0	0	2	2	2	1	Cytochrome	C	assembly	protein
Holin_BhlA	PF10960.8	gi|410672374|ref|YP_006924745.1|	-	0.081	12.9	0.0	0.081	12.9	0.0	2.2	3	0	0	3	3	3	0	BhlA	holin	family
CcmB	PF03379.13	gi|410672375|ref|YP_006924746.1|	-	1.8e-37	128.9	15.1	2.1e-37	128.7	15.1	1.0	1	0	0	1	1	1	1	CcmB	protein
ABC2_membrane	PF01061.24	gi|410672375|ref|YP_006924746.1|	-	1.5e-12	47.4	11.3	1.5e-12	47.4	11.3	1.5	1	1	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|410672375|ref|YP_006924746.1|	-	1.5e-08	34.2	18.2	6.9e-08	32.0	17.8	1.9	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|410672375|ref|YP_006924746.1|	-	2.6e-06	26.9	19.5	2.6e-05	23.7	17.9	2.4	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|410672375|ref|YP_006924746.1|	-	0.0012	18.8	13.7	0.0021	18.0	12.3	2.1	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|410672376|ref|YP_006924747.1|	-	3.1e-34	118.4	0.0	4.2e-34	118.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|410672376|ref|YP_006924747.1|	-	4.7e-08	33.2	0.9	0.00082	19.3	0.2	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|410672376|ref|YP_006924747.1|	-	3.9e-05	23.3	0.2	7.6e-05	22.4	0.2	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|410672376|ref|YP_006924747.1|	-	4.2e-05	24.1	0.0	6e-05	23.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|410672376|ref|YP_006924747.1|	-	0.00023	21.6	0.2	0.0013	19.1	0.2	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.15	gi|410672376|ref|YP_006924747.1|	-	0.00073	19.5	0.0	0.00085	19.3	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
SMC_N	PF02463.19	gi|410672376|ref|YP_006924747.1|	-	0.00095	18.7	0.7	0.064	12.7	0.1	2.1	1	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
SRP54	PF00448.22	gi|410672376|ref|YP_006924747.1|	-	0.001	18.7	0.0	0.009	15.7	0.0	2.0	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
AAA_30	PF13604.6	gi|410672376|ref|YP_006924747.1|	-	0.0018	18.0	0.0	0.0029	17.4	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_27	PF13514.6	gi|410672376|ref|YP_006924747.1|	-	0.0019	17.8	0.1	0.015	14.9	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
cobW	PF02492.19	gi|410672376|ref|YP_006924747.1|	-	0.0041	16.7	0.7	0.006	16.2	0.1	1.6	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_22	PF13401.6	gi|410672376|ref|YP_006924747.1|	-	0.0094	16.2	0.4	0.07	13.4	0.1	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.6	gi|410672376|ref|YP_006924747.1|	-	0.013	15.2	0.0	0.024	14.3	0.0	1.5	2	0	0	2	2	2	0	AAA	ATPase	domain
ATPase_2	PF01637.18	gi|410672376|ref|YP_006924747.1|	-	0.016	15.2	0.0	0.028	14.3	0.0	1.4	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_13	PF13166.6	gi|410672376|ref|YP_006924747.1|	-	0.021	13.5	0.0	0.032	12.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|410672376|ref|YP_006924747.1|	-	0.036	14.4	0.1	0.052	13.9	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
RecA	PF00154.21	gi|410672376|ref|YP_006924747.1|	-	0.036	13.5	0.0	0.062	12.8	0.0	1.4	1	0	0	1	1	1	0	recA	bacterial	DNA	recombination	protein
RsgA_GTPase	PF03193.16	gi|410672376|ref|YP_006924747.1|	-	0.048	13.6	0.0	0.1	12.5	0.0	1.7	1	0	0	1	1	1	0	RsgA	GTPase
ATP-synt_ab	PF00006.25	gi|410672376|ref|YP_006924747.1|	-	0.077	12.6	0.1	0.1	12.2	0.1	1.4	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
PIF1	PF05970.14	gi|410672376|ref|YP_006924747.1|	-	0.077	12.2	0.1	0.19	10.9	0.1	1.6	1	0	0	1	1	1	0	PIF1-like	helicase
AAA_25	PF13481.6	gi|410672376|ref|YP_006924747.1|	-	0.079	12.5	0.0	0.11	12.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|410672376|ref|YP_006924747.1|	-	0.088	12.1	0.0	0.15	11.3	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
NB-ARC	PF00931.22	gi|410672376|ref|YP_006924747.1|	-	0.091	11.9	0.3	0.42	9.8	0.0	2.1	2	1	0	2	2	2	0	NB-ARC	domain
Mg_chelatase	PF01078.21	gi|410672376|ref|YP_006924747.1|	-	0.098	12.0	0.1	0.58	9.5	0.0	2.1	3	0	0	3	3	3	0	Magnesium	chelatase,	subunit	ChlI
AAA_24	PF13479.6	gi|410672376|ref|YP_006924747.1|	-	0.11	12.2	0.1	0.2	11.4	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|410672376|ref|YP_006924747.1|	-	0.13	12.5	0.1	0.26	11.5	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|410672376|ref|YP_006924747.1|	-	0.16	12.4	0.0	0.44	10.9	0.0	1.8	1	1	0	1	1	1	0	RNA	helicase
AAA_18	PF13238.6	gi|410672376|ref|YP_006924747.1|	-	0.16	12.5	0.1	0.51	10.9	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
DUF1724	PF08350.10	gi|410672377|ref|YP_006924748.1|	-	7.1e-22	77.3	0.1	1.4e-21	76.3	0.1	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
DUF3452	PF11934.8	gi|410672377|ref|YP_006924748.1|	-	0.028	14.0	0.7	0.035	13.7	0.7	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3452)
DUF2891	PF11199.8	gi|410672377|ref|YP_006924748.1|	-	0.08	11.9	0.0	0.1	11.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2891)
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanolobus_psychrophilus_R15_uid177925/NC_018876.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanolobus_psychrophilus_R15_uid177925/NC_018876.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanolobus_psychrophilus_R15_uid177925/NC_018876.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanolobus_psychrophilus_R15_uid177925/NC_018876.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 16:10:08 2019
# [ok]