# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|294494691|ref|YP_003541184.1| - 4e-28 96.9 0.4 1.2e-27 95.4 0.3 1.9 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|294494691|ref|YP_003541184.1| - 9.8e-14 51.6 0.0 2.9e-13 50.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|294494691|ref|YP_003541184.1| - 4.5e-10 39.8 0.3 1.3e-08 35.0 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|294494691|ref|YP_003541184.1| - 9.7e-10 38.7 0.0 2.2e-09 37.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|294494691|ref|YP_003541184.1| - 3.1e-07 30.3 0.2 7.1e-07 29.1 0.0 1.7 2 0 0 2 2 2 1 Archaeal ATPase DUF2075 PF09848.4 gi|294494691|ref|YP_003541184.1| - 6.7e-05 22.0 0.0 9.9e-05 21.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.21 gi|294494691|ref|YP_003541184.1| - 8.1e-05 22.1 0.0 0.0002 20.8 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.7 gi|294494691|ref|YP_003541184.1| - 0.00026 20.6 0.0 0.00057 19.5 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_25 PF13481.1 gi|294494691|ref|YP_003541184.1| - 0.00044 19.7 0.2 0.0013 18.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain DEAD PF00270.24 gi|294494691|ref|YP_003541184.1| - 0.00057 19.4 4.3 0.26 10.7 0.0 3.1 2 1 0 3 3 3 2 DEAD/DEAH box helicase RuvB_N PF05496.7 gi|294494691|ref|YP_003541184.1| - 0.0036 16.3 0.0 0.06 12.3 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus KAP_NTPase PF07693.9 gi|294494691|ref|YP_003541184.1| - 0.0036 16.3 1.4 0.15 11.0 0.0 2.3 1 1 1 2 2 2 1 KAP family P-loop domain T2SE PF00437.15 gi|294494691|ref|YP_003541184.1| - 0.0058 15.5 0.3 0.028 13.3 0.0 2.0 2 0 0 2 2 2 1 Type II/IV secretion system protein Bac_DnaA PF00308.13 gi|294494691|ref|YP_003541184.1| - 0.0077 15.8 1.0 0.054 13.1 0.7 2.2 1 1 0 1 1 1 1 Bacterial dnaA protein Sigma54_activ_2 PF14532.1 gi|294494691|ref|YP_003541184.1| - 0.01 15.8 0.0 0.022 14.7 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF815 PF05673.8 gi|294494691|ref|YP_003541184.1| - 0.011 14.6 0.2 0.026 13.4 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_24 PF13479.1 gi|294494691|ref|YP_003541184.1| - 0.012 15.1 0.7 0.023 14.3 0.4 1.6 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|294494691|ref|YP_003541184.1| - 0.014 14.6 0.0 0.039 13.1 0.0 1.7 1 0 0 1 1 1 0 PhoH-like protein AAA_17 PF13207.1 gi|294494691|ref|YP_003541184.1| - 0.015 16.0 0.5 0.043 14.6 0.4 2.1 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|294494691|ref|YP_003541184.1| - 0.02 15.1 0.4 0.074 13.3 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_2 PF07724.9 gi|294494691|ref|YP_003541184.1| - 0.023 14.5 0.2 0.17 11.7 0.0 2.4 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) NB-ARC PF00931.17 gi|294494691|ref|YP_003541184.1| - 0.038 12.8 0.1 0.057 12.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain FtsK_SpoIIIE PF01580.13 gi|294494691|ref|YP_003541184.1| - 0.047 13.1 0.0 0.12 11.8 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family Sin3_corepress PF08295.7 gi|294494691|ref|YP_003541184.1| - 0.062 13.0 0.1 0.26 11.0 0.1 2.0 1 0 0 1 1 1 0 Sin3 family co-repressor IstB_IS21 PF01695.12 gi|294494691|ref|YP_003541184.1| - 0.075 12.4 0.1 0.24 10.7 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein ResIII PF04851.10 gi|294494691|ref|YP_003541184.1| - 0.076 12.8 0.0 0.19 11.5 0.0 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_5 PF07728.9 gi|294494691|ref|YP_003541184.1| - 0.092 12.4 0.3 0.42 10.3 0.2 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|294494691|ref|YP_003541184.1| - 0.12 12.6 0.0 0.29 11.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.1 gi|294494691|ref|YP_003541184.1| - 2.9 8.1 4.9 20 5.4 3.4 2.1 1 1 0 1 1 1 0 AAA domain Peptidase_S24 PF00717.18 gi|294494692|ref|YP_003541185.1| - 8.8e-05 22.0 0.1 0.00015 21.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.11 gi|294494693|ref|YP_003541186.1| - 2.8e-15 56.1 0.0 4.3e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|294494693|ref|YP_003541186.1| - 1e-12 48.1 0.1 2.4e-12 46.9 0.0 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|294494693|ref|YP_003541186.1| - 2.3e-06 27.1 3.8 7e-06 25.5 2.6 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|294494693|ref|YP_003541186.1| - 2.5e-05 24.0 0.0 8.7e-05 22.3 0.0 1.9 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.2 gi|294494693|ref|YP_003541186.1| - 0.023 14.1 0.0 0.046 13.1 0.0 1.4 1 0 0 1 1 1 0 tRNA_anti-like Wyosine_form PF08608.7 gi|294494694|ref|YP_003541187.1| - 9.6e-20 70.4 0.0 7.2e-19 67.6 0.0 2.2 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.16 gi|294494694|ref|YP_003541187.1| - 3e-18 66.5 0.8 1.5e-17 64.2 0.5 1.9 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|294494694|ref|YP_003541187.1| - 0.00041 20.3 0.0 0.00079 19.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|294494694|ref|YP_003541187.1| - 0.00068 19.7 0.1 0.0037 17.3 0.0 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain HAD_2 PF13419.1 gi|294494694|ref|YP_003541187.1| - 0.021 15.0 0.0 0.049 13.8 0.0 1.6 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase eRF1_2 PF03464.10 gi|294494695|ref|YP_003541188.1| - 1.8e-34 118.9 0.0 3.1e-34 118.1 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|294494695|ref|YP_003541188.1| - 6.4e-32 110.1 0.1 3.5e-31 107.7 0.0 2.1 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|294494695|ref|YP_003541188.1| - 7.8e-26 90.2 0.0 1.3e-25 89.4 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 zf-TFIIB PF13453.1 gi|294494695|ref|YP_003541188.1| - 0.088 12.0 0.0 0.18 11.0 0.0 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger DNA_ligase_ZBD PF03119.11 gi|294494695|ref|YP_003541188.1| - 0.17 11.5 2.6 0.19 11.4 0.4 2.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.5 gi|294494695|ref|YP_003541188.1| - 0.46 10.4 1.9 1.6 8.7 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain tRNA-synt_1d PF00750.14 gi|294494696|ref|YP_003541189.1| - 1.5e-61 208.2 0.9 2.1e-61 207.7 0.6 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|294494696|ref|YP_003541189.1| - 3.4e-33 114.1 0.0 9.3e-33 112.7 0.0 1.8 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|294494696|ref|YP_003541189.1| - 1.5e-13 51.1 0.2 4.8e-13 49.4 0.1 1.9 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1g PF09334.6 gi|294494696|ref|YP_003541189.1| - 5.4e-06 25.3 0.1 0.0067 15.1 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|294494696|ref|YP_003541189.1| - 1.3e-05 24.0 0.0 0.099 11.2 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|294494696|ref|YP_003541189.1| - 0.0006 19.0 0.4 0.0013 17.8 0.3 1.7 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.17 gi|294494696|ref|YP_003541189.1| - 0.005 14.9 0.0 0.0078 14.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) DUF1294 PF06961.8 gi|294494697|ref|YP_003541190.1| - 4e-21 74.7 0.8 5.2e-21 74.3 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) Na_Ca_ex PF01699.19 gi|294494697|ref|YP_003541190.1| - 0.25 10.9 1.8 0.53 9.8 0.3 1.8 1 1 1 2 2 2 0 Sodium/calcium exchanger protein DUF1049 PF06305.6 gi|294494697|ref|YP_003541190.1| - 3 7.3 4.6 0.82 9.1 0.8 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1049) URO-D PF01208.12 gi|294494698|ref|YP_003541191.1| - 2.3e-68 230.6 0.0 2.8e-68 230.3 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_2 PF01717.13 gi|294494699|ref|YP_003541192.1| - 0.0027 16.7 0.0 0.38 9.6 0.0 2.6 2 1 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|294494699|ref|YP_003541192.1| - 0.049 12.9 0.0 0.072 12.3 0.0 1.3 1 0 0 1 1 1 0 Cobalamin-independent synthase, N-terminal domain DUF95 PF01944.12 gi|294494700|ref|YP_003541193.1| - 9e-11 41.7 12.9 9e-11 41.7 8.9 2.6 2 1 0 2 2 2 2 Integral membrane protein DUF95 KaiC PF06745.8 gi|294494701|ref|YP_003541194.1| - 1.7e-41 141.8 0.0 2.3e-41 141.3 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|294494701|ref|YP_003541194.1| - 7e-11 41.8 0.0 7.3e-06 25.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain PAXNEB PF05625.6 gi|294494701|ref|YP_003541194.1| - 0.00026 19.9 1.3 0.086 11.6 0.3 2.2 2 0 0 2 2 2 2 PAXNEB protein RecA PF00154.16 gi|294494701|ref|YP_003541194.1| - 0.0008 18.5 0.2 0.0012 18.0 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.6 gi|294494701|ref|YP_003541194.1| - 0.0012 17.2 0.0 0.016 13.5 0.0 2.0 2 0 0 2 2 2 1 GvpD gas vesicle protein DnaB_C PF03796.10 gi|294494701|ref|YP_003541194.1| - 0.0034 16.3 0.1 0.0082 15.0 0.0 1.8 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_33 PF13671.1 gi|294494701|ref|YP_003541194.1| - 0.02 14.8 0.1 0.026 14.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|294494701|ref|YP_003541194.1| - 0.02 14.8 0.0 0.033 14.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|294494701|ref|YP_003541194.1| - 0.022 14.5 0.5 0.047 13.4 0.2 1.7 2 0 0 2 2 2 0 Part of AAA domain UPF0079 PF02367.12 gi|294494701|ref|YP_003541194.1| - 0.03 13.9 0.1 0.051 13.1 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|294494701|ref|YP_003541194.1| - 0.074 13.1 0.0 0.16 12.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|294494701|ref|YP_003541194.1| - 0.087 13.6 0.2 0.48 11.2 0.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|294494701|ref|YP_003541194.1| - 0.15 11.5 0.0 0.32 10.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain GTP_EFTU_D2 PF03144.20 gi|294494702|ref|YP_003541195.1| - 3.6e-08 33.4 0.1 7.1e-08 32.4 0.1 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU PF00009.22 gi|294494702|ref|YP_003541195.1| - 4.2e-06 26.3 0.0 1.3e-05 24.6 0.0 1.6 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.1 gi|294494702|ref|YP_003541195.1| - 0.00035 20.1 1.2 0.0011 18.5 0.3 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 4 AAA_17 PF13207.1 gi|294494702|ref|YP_003541195.1| - 0.0039 17.9 0.3 0.038 14.8 0.0 2.5 2 1 0 2 2 2 1 AAA domain PduV-EutP PF10662.4 gi|294494702|ref|YP_003541195.1| - 0.014 14.9 0.2 0.033 13.6 0.1 1.8 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|294494702|ref|YP_003541195.1| - 0.016 15.7 0.8 0.21 12.1 0.0 2.7 3 0 0 3 3 3 0 Miro-like protein PhoU PF01895.14 gi|294494702|ref|YP_003541195.1| - 0.038 14.4 0.0 0.088 13.2 0.0 1.6 1 0 0 1 1 1 0 PhoU domain Ldh_1_N PF00056.18 gi|294494702|ref|YP_003541195.1| - 0.055 13.2 0.1 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain AAA_28 PF13521.1 gi|294494702|ref|YP_003541195.1| - 0.12 12.3 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|294494702|ref|YP_003541195.1| - 0.22 11.8 1.6 0.43 10.8 0.0 2.2 3 0 0 3 3 3 0 AAA domain DNA_ligase_A_M PF01068.16 gi|294494703|ref|YP_003541196.1| - 1.7e-21 76.5 0.0 3.3e-21 75.5 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|294494703|ref|YP_003541196.1| - 3.2e-10 40.1 0.1 1.9e-09 37.5 0.0 2.0 1 1 0 1 1 1 1 RNA ligase CBS PF00571.23 gi|294494704|ref|YP_003541197.1| - 1.8e-42 142.8 9.0 4.1e-12 45.6 0.0 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|294494705|ref|YP_003541198.1| - 2.3e-42 142.5 15.3 4.9e-12 45.4 0.1 4.2 4 0 0 4 4 4 4 CBS domain TTKRSYEDQ PF10212.4 gi|294494705|ref|YP_003541198.1| - 0.011 14.7 0.2 0.015 14.2 0.1 1.1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein CBS PF00571.23 gi|294494706|ref|YP_003541199.1| - 4.4e-51 170.4 3.7 1.5e-12 47.1 0.0 4.3 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|294494707|ref|YP_003541200.1| - 1.5e-48 162.2 3.0 1.6e-16 59.8 0.0 4.1 4 0 0 4 4 4 4 CBS domain PRC PF05239.11 gi|294494707|ref|YP_003541200.1| - 0.061 13.1 0.1 3.7 7.4 0.0 2.6 2 0 0 2 2 2 0 PRC-barrel domain CBS PF00571.23 gi|294494708|ref|YP_003541201.1| - 1.7e-22 78.9 2.9 2.7e-10 39.8 0.1 2.2 2 0 0 2 2 2 2 CBS domain Nudix_N_2 PF14803.1 gi|294494708|ref|YP_003541201.1| - 0.21 11.2 1.4 2.6 7.7 0.1 2.6 3 0 0 3 3 3 0 Nudix N-terminal HATPase_c PF02518.21 gi|294494709|ref|YP_003541202.1| - 6.9e-22 77.2 0.0 1.6e-21 76.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|294494709|ref|YP_003541202.1| - 1.9e-05 24.2 0.3 0.00074 19.1 0.1 3.5 3 0 0 3 3 3 1 GHKL domain HATPase_c_2 PF13581.1 gi|294494709|ref|YP_003541202.1| - 0.00088 19.0 0.0 0.0017 18.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|294494709|ref|YP_003541202.1| - 0.0012 18.5 0.1 0.0026 17.3 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.1 gi|294494709|ref|YP_003541202.1| - 0.0031 17.0 1.2 0.0082 15.6 0.2 2.3 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain URO-D PF01208.12 gi|294494710|ref|YP_003541203.1| - 2e-63 214.3 0.0 2.3e-63 214.2 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) B12-binding_2 PF02607.12 gi|294494711|ref|YP_003541204.1| - 3.8e-12 46.0 0.3 1.2e-11 44.4 0.1 1.9 2 0 0 2 2 2 1 B12 binding domain B12-binding PF02310.14 gi|294494711|ref|YP_003541204.1| - 8.2e-11 41.8 0.0 1.4e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain tRNA_anti-codon PF01336.20 gi|294494712|ref|YP_003541205.1| - 2.2e-30 104.3 7.6 7e-12 45.0 0.5 3.4 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|294494712|ref|YP_003541205.1| - 0.004 16.8 0.0 17 5.0 0.0 3.3 3 0 0 3 3 3 2 Replication factor-A C terminal domain DUF2240 PF09999.4 gi|294494712|ref|YP_003541205.1| - 0.069 12.5 0.1 0.12 11.7 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2240) SHOCT PF09851.4 gi|294494712|ref|YP_003541205.1| - 0.18 11.3 4.5 0.12 11.9 1.0 2.2 2 0 0 2 2 2 0 Short C-terminal domain PTS_2-RNA PF01885.11 gi|294494713|ref|YP_003541206.1| - 9.5e-41 139.1 0.0 1.3e-40 138.7 0.0 1.1 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family Toprim_4 PF13662.1 gi|294494714|ref|YP_003541207.1| - 7.4e-10 38.6 0.2 2e-09 37.3 0.1 1.8 1 1 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|294494714|ref|YP_003541207.1| - 0.0024 17.8 0.1 0.013 15.5 0.1 2.2 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|294494714|ref|YP_003541207.1| - 0.075 13.3 0.0 0.17 12.2 0.0 1.6 1 0 0 1 1 1 0 Toprim-like DUF3347 PF11827.3 gi|294494715|ref|YP_003541208.1| - 0.017 15.1 0.3 0.029 14.3 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3347) DUF948 PF06103.6 gi|294494715|ref|YP_003541208.1| - 0.077 12.8 0.4 0.63 9.9 0.0 2.3 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF1297 PF06973.7 gi|294494716|ref|YP_003541209.1| - 1.6e-65 219.9 0.5 2.1e-65 219.5 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|294494716|ref|YP_003541209.1| - 6.3e-44 148.7 0.0 1.2e-43 147.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.9 gi|294494716|ref|YP_003541209.1| - 2.1e-06 27.6 0.0 1.4e-05 24.9 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|294494716|ref|YP_003541209.1| - 9.7e-05 22.1 0.1 0.009 15.7 0.0 2.4 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|294494716|ref|YP_003541209.1| - 0.0096 15.2 0.0 0.017 14.4 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain HTH_20 PF12840.2 gi|294494717|ref|YP_003541210.1| - 1.5e-08 34.3 0.0 3.3e-08 33.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|294494717|ref|YP_003541210.1| - 3.1e-06 26.7 0.2 5.8e-06 25.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|294494717|ref|YP_003541210.1| - 1.2e-05 24.5 0.3 1.2e-05 24.5 0.2 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF742 PF05331.6 gi|294494717|ref|YP_003541210.1| - 1.7e-05 24.4 0.0 3e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF742) TrmB PF01978.14 gi|294494717|ref|YP_003541210.1| - 3.6e-05 23.3 0.0 6.6e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|294494717|ref|YP_003541210.1| - 0.00059 19.3 0.6 0.0017 17.9 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_38 PF13936.1 gi|294494717|ref|YP_003541210.1| - 0.0025 17.3 0.0 0.0045 16.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|294494717|ref|YP_003541210.1| - 0.013 15.1 0.4 0.084 12.4 0.1 2.0 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2250 PF10007.4 gi|294494717|ref|YP_003541210.1| - 0.038 13.9 0.1 0.058 13.3 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.7 gi|294494717|ref|YP_003541210.1| - 0.058 13.0 0.1 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.1 gi|294494717|ref|YP_003541210.1| - 0.11 12.8 0.1 0.23 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|294494717|ref|YP_003541210.1| - 0.14 11.8 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 MarR family CD24 PF14984.1 gi|294494717|ref|YP_003541210.1| - 0.25 11.1 2.2 0.56 10.0 1.6 1.5 1 0 0 1 1 1 0 CD24 protein PseudoU_synth_1 PF01416.15 gi|294494718|ref|YP_003541211.1| - 4.4e-31 107.4 0.0 1e-18 67.6 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase DUF45 PF01863.12 gi|294494719|ref|YP_003541212.1| - 2.8e-32 112.1 2.6 5.5e-28 98.1 2.7 2.2 1 1 1 2 2 2 2 Protein of unknown function DUF45 WLM PF08325.5 gi|294494719|ref|YP_003541212.1| - 0.0096 15.8 1.2 0.019 14.8 0.4 1.7 1 1 1 2 2 2 1 WLM domain SprT-like PF10263.4 gi|294494719|ref|YP_003541212.1| - 0.056 13.1 0.4 0.079 12.6 0.3 1.2 1 0 0 1 1 1 0 SprT-like family UPF0020 PF01170.13 gi|294494720|ref|YP_003541213.1| - 1.1e-31 109.8 0.0 1.5e-31 109.3 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|294494720|ref|YP_003541213.1| - 5.7e-14 52.1 0.0 1.2e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.12 gi|294494720|ref|YP_003541213.1| - 9e-10 38.6 0.0 1.6e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.1 gi|294494720|ref|YP_003541213.1| - 4.9e-09 35.9 0.0 9.9e-09 34.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|294494720|ref|YP_003541213.1| - 3.3e-07 30.0 0.0 0.022 14.2 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_11 PF08241.7 gi|294494720|ref|YP_003541213.1| - 4.4e-07 30.3 0.0 1.3e-06 28.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|294494720|ref|YP_003541213.1| - 1.7e-06 27.5 0.0 2.8e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|294494720|ref|YP_003541213.1| - 1.2e-05 25.8 0.0 2.7e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|294494720|ref|YP_003541213.1| - 0.00039 19.6 0.0 0.00076 18.6 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.5 gi|294494720|ref|YP_003541213.1| - 0.00091 18.8 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.11 gi|294494720|ref|YP_003541213.1| - 0.027 13.5 0.0 0.042 12.9 0.0 1.3 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_25 PF13649.1 gi|294494720|ref|YP_003541213.1| - 0.078 13.3 0.0 0.17 12.2 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain DUF1805 PF08827.6 gi|294494721|ref|YP_003541214.1| - 1.1e-23 82.7 0.7 1.5e-23 82.2 0.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) TPK_B1_binding PF04265.9 gi|294494721|ref|YP_003541214.1| - 0.11 12.1 0.1 1.4 8.7 0.0 2.1 1 1 1 2 2 2 0 Thiamin pyrophosphokinase, vitamin B1 binding domain Prenyltrans_2 PF13249.1 gi|294494722|ref|YP_003541215.1| - 6.5e-25 87.7 8.9 4.6e-17 62.4 0.6 3.8 2 2 2 4 4 4 3 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|294494722|ref|YP_003541215.1| - 1.4e-20 73.3 7.9 4.1e-07 29.9 0.2 4.6 3 2 1 4 4 4 4 Prenyltransferase-like Prenyltrans PF00432.16 gi|294494722|ref|YP_003541215.1| - 1e-13 50.6 0.5 0.015 14.8 0.0 5.9 6 0 0 6 6 6 3 Prenyltransferase and squalene oxidase repeat A2M_comp PF07678.9 gi|294494722|ref|YP_003541215.1| - 0.0067 15.6 0.1 1.5 8.0 0.0 2.9 3 0 0 3 3 3 2 A-macroglobulin complement component SVA PF05326.6 gi|294494723|ref|YP_003541216.1| - 0.14 11.9 0.4 14 5.4 0.0 2.3 1 1 1 2 2 2 0 Seminal vesicle autoantigen (SVA) Peptidase_M24 PF00557.19 gi|294494724|ref|YP_003541217.1| - 4.5e-44 150.5 0.0 5.2e-44 150.3 0.0 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.19 gi|294494725|ref|YP_003541218.1| - 1.4e-44 152.1 0.8 2.2e-44 151.5 0.5 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF2452 PF10504.4 gi|294494725|ref|YP_003541218.1| - 0.026 13.7 0.1 0.34 10.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2452) NosD PF05048.8 gi|294494726|ref|YP_003541219.1| - 2.1e-77 259.4 182.3 5.6e-32 110.7 29.8 8.0 3 2 4 8 8 8 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|294494726|ref|YP_003541219.1| - 2.3e-48 163.9 237.5 2.3e-16 59.9 39.5 7.8 5 3 3 8 8 8 5 Right handed beta helix region DUF11 PF01345.13 gi|294494726|ref|YP_003541219.1| - 1.2e-06 28.4 47.2 0.016 15.2 3.2 7.7 4 1 2 6 6 6 5 Domain of unknown function DUF11 malic PF00390.14 gi|294494727|ref|YP_003541220.1| - 0.0073 15.9 0.0 0.0073 15.9 0.0 1.0 1 0 0 1 1 1 1 Malic enzyme, N-terminal domain DUF318 PF03773.8 gi|294494728|ref|YP_003541221.1| - 0.0022 17.0 4.2 0.0024 16.9 2.9 1.0 1 0 0 1 1 1 1 Predicted permease CAP PF00188.21 gi|294494729|ref|YP_003541222.1| - 8.3e-18 65.0 0.4 8.3e-18 65.0 0.3 2.3 1 1 0 2 2 2 1 Cysteine-rich secretory protein family BiPBP_C PF06832.7 gi|294494729|ref|YP_003541222.1| - 0.055 13.3 0.0 0.091 12.6 0.0 1.3 1 0 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family Capsid_NCLDV PF04451.7 gi|294494730|ref|YP_003541223.1| - 0.013 14.5 0.0 0.024 13.6 0.0 1.5 1 1 0 1 1 1 0 Large eukaryotic DNA virus major capsid protein SBP_bac_5 PF00496.17 gi|294494732|ref|YP_003541225.1| - 1.9e-86 290.2 1.5 2.3e-86 289.9 1.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Methyltransf_11 PF08241.7 gi|294494733|ref|YP_003541226.1| - 1.6e-24 86.1 0.0 2.6e-24 85.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|294494733|ref|YP_003541226.1| - 2.5e-24 85.5 0.0 3.3e-24 85.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|294494733|ref|YP_003541226.1| - 5.7e-17 61.9 0.0 8.4e-17 61.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|294494733|ref|YP_003541226.1| - 2.3e-14 53.0 0.0 4.1e-14 52.2 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|294494733|ref|YP_003541226.1| - 9.5e-14 51.9 0.0 1.6e-13 51.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|294494733|ref|YP_003541226.1| - 2e-13 50.5 0.0 3.4e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|294494733|ref|YP_003541226.1| - 5.8e-13 49.1 0.0 9.5e-13 48.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|294494733|ref|YP_003541226.1| - 2.2e-10 40.5 0.0 3.9e-10 39.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|294494733|ref|YP_003541226.1| - 1.3e-07 30.9 0.0 2.2e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.9 gi|294494733|ref|YP_003541226.1| - 4.4e-07 29.4 0.0 6.6e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.1 gi|294494733|ref|YP_003541226.1| - 3.4e-06 26.7 0.0 5.2e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|294494733|ref|YP_003541226.1| - 1.4e-05 24.5 0.0 2.1e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW DREV PF05219.7 gi|294494733|ref|YP_003541226.1| - 9.6e-05 21.3 0.0 0.00017 20.5 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase PrmA PF06325.8 gi|294494733|ref|YP_003541226.1| - 0.00012 21.3 0.0 0.00017 20.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.6 gi|294494733|ref|YP_003541226.1| - 0.00055 19.3 0.0 0.00075 18.9 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) PCMT PF01135.14 gi|294494733|ref|YP_003541226.1| - 0.00088 18.8 0.0 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|294494733|ref|YP_003541226.1| - 0.0013 17.8 0.0 0.002 17.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.6 gi|294494733|ref|YP_003541226.1| - 0.0037 16.0 0.0 0.0053 15.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) UPF0020 PF01170.13 gi|294494733|ref|YP_003541226.1| - 0.004 16.7 0.0 0.0061 16.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 GidB PF02527.10 gi|294494733|ref|YP_003541226.1| - 0.011 14.8 0.0 0.018 14.2 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G 3HCDH_N PF02737.13 gi|294494733|ref|YP_003541226.1| - 0.011 15.3 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_4 PF02390.12 gi|294494733|ref|YP_003541226.1| - 0.012 14.7 0.0 0.018 14.0 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase TPMT PF05724.6 gi|294494733|ref|YP_003541226.1| - 0.031 13.7 0.0 0.043 13.2 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) BPD_transp_1 PF00528.17 gi|294494734|ref|YP_003541227.1| - 1.1e-46 158.6 10.0 1.1e-46 158.6 6.9 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|294494735|ref|YP_003541228.1| - 2.3e-25 89.1 11.1 2.3e-25 89.1 7.7 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|294494735|ref|YP_003541228.1| - 1.1e-07 31.1 0.2 1.1e-07 31.1 0.1 2.7 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|294494736|ref|YP_003541229.1| - 1.4e-25 90.1 0.0 2e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|294494736|ref|YP_003541229.1| - 2.4e-13 50.2 2.0 4.7e-13 49.2 1.4 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|294494736|ref|YP_003541229.1| - 3.3e-09 37.1 1.6 1.2e-07 31.9 0.0 2.2 1 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|294494736|ref|YP_003541229.1| - 6.9e-07 28.7 0.0 1.1e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|294494736|ref|YP_003541229.1| - 0.00035 20.7 0.0 0.001 19.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|294494736|ref|YP_003541229.1| - 0.00076 19.5 0.0 0.0018 18.2 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|294494736|ref|YP_003541229.1| - 0.002 17.3 0.0 0.014 14.5 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DUF258 PF03193.11 gi|294494736|ref|YP_003541229.1| - 0.0032 16.6 1.1 0.0064 15.6 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function, DUF258 DUF2075 PF09848.4 gi|294494736|ref|YP_003541229.1| - 0.0098 14.9 0.0 0.013 14.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) MobB PF03205.9 gi|294494736|ref|YP_003541229.1| - 0.049 13.3 0.0 0.074 12.7 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|294494736|ref|YP_003541229.1| - 0.059 12.7 0.0 0.094 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|294494736|ref|YP_003541229.1| - 0.06 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|294494736|ref|YP_003541229.1| - 0.13 12.4 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_29 PF13555.1 gi|294494736|ref|YP_003541229.1| - 0.13 11.7 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|294494736|ref|YP_003541229.1| - 0.14 11.5 0.0 0.77 9.1 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_tran PF00005.22 gi|294494737|ref|YP_003541230.1| - 6.4e-34 117.1 0.0 9.9e-34 116.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|294494737|ref|YP_003541230.1| - 1.5e-10 41.5 1.8 1.4e-06 28.5 1.0 2.3 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|294494737|ref|YP_003541230.1| - 4.1e-10 39.2 0.1 7.2e-10 38.4 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|294494737|ref|YP_003541230.1| - 6.3e-09 36.0 0.4 1.1e-08 35.3 0.3 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|294494737|ref|YP_003541230.1| - 9.8e-08 32.2 1.0 3.8e-07 30.2 0.7 1.8 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|294494737|ref|YP_003541230.1| - 2.9e-06 26.6 0.4 0.00064 18.8 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|294494737|ref|YP_003541230.1| - 1.2e-05 24.8 0.1 0.00033 20.1 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein oligo_HPY PF08352.7 gi|294494737|ref|YP_003541230.1| - 2.9e-05 24.3 0.0 6e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_10 PF12846.2 gi|294494737|ref|YP_003541230.1| - 8e-05 22.2 0.0 0.00052 19.5 0.0 1.8 1 1 1 2 2 2 1 AAA-like domain KaiC PF06745.8 gi|294494737|ref|YP_003541230.1| - 0.00012 21.2 1.5 0.024 13.7 0.0 2.8 2 1 0 3 3 3 1 KaiC AAA PF00004.24 gi|294494737|ref|YP_003541230.1| - 0.00027 21.1 1.7 0.0054 16.9 1.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|294494737|ref|YP_003541230.1| - 0.00043 19.7 1.3 0.039 13.3 0.9 2.4 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|294494737|ref|YP_003541230.1| - 0.00044 19.7 0.1 0.0076 15.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF258 PF03193.11 gi|294494737|ref|YP_003541230.1| - 0.00058 19.0 0.0 0.00094 18.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 NACHT PF05729.7 gi|294494737|ref|YP_003541230.1| - 0.00063 19.4 0.3 0.0015 18.2 0.0 1.7 2 1 0 2 2 2 1 NACHT domain ATP-synt_ab PF00006.20 gi|294494737|ref|YP_003541230.1| - 0.0013 18.2 0.0 0.0014 18.2 0.0 1.3 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.17 gi|294494737|ref|YP_003541230.1| - 0.0021 16.9 0.1 0.0062 15.4 0.0 1.7 2 0 0 2 2 2 1 NB-ARC domain ResIII PF04851.10 gi|294494737|ref|YP_003541230.1| - 0.0022 17.8 0.3 0.02 14.7 0.0 2.2 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit PRK PF00485.13 gi|294494737|ref|YP_003541230.1| - 0.0047 16.5 0.0 0.0066 16.0 0.0 1.4 1 1 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family Sigma54_activ_2 PF14532.1 gi|294494737|ref|YP_003541230.1| - 0.0049 16.9 0.1 0.087 12.8 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|294494737|ref|YP_003541230.1| - 0.0051 16.5 1.1 1.8 8.2 0.0 2.2 2 0 0 2 2 2 1 NTPase T2SE PF00437.15 gi|294494737|ref|YP_003541230.1| - 0.0052 15.7 0.1 0.028 13.3 0.0 2.0 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_23 PF13476.1 gi|294494737|ref|YP_003541230.1| - 0.0053 17.1 0.1 0.013 15.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain HTH_20 PF12840.2 gi|294494737|ref|YP_003541230.1| - 0.0062 16.3 0.3 2.1 8.2 0.1 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain AAA_5 PF07728.9 gi|294494737|ref|YP_003541230.1| - 0.007 16.0 0.2 0.098 12.3 0.0 2.4 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|294494737|ref|YP_003541230.1| - 0.014 14.9 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|294494737|ref|YP_003541230.1| - 0.014 15.6 0.4 0.04 14.2 0.3 2.0 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|294494737|ref|YP_003541230.1| - 0.023 13.9 0.0 0.041 13.1 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein PduV-EutP PF10662.4 gi|294494737|ref|YP_003541230.1| - 0.025 14.0 0.2 0.072 12.5 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|294494737|ref|YP_003541230.1| - 0.028 14.3 0.0 0.07 13.0 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase Arch_ATPase PF01637.13 gi|294494737|ref|YP_003541230.1| - 0.028 14.1 0.5 0.066 12.8 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase AAA_19 PF13245.1 gi|294494737|ref|YP_003541230.1| - 0.039 13.7 0.0 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 Part of AAA domain RNA_helicase PF00910.17 gi|294494737|ref|YP_003541230.1| - 0.048 13.8 0.0 0.1 12.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.1 gi|294494737|ref|YP_003541230.1| - 0.049 13.2 0.1 0.23 11.0 0.0 2.1 3 0 0 3 3 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|294494737|ref|YP_003541230.1| - 0.049 13.1 0.0 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family Mg_chelatase PF01078.16 gi|294494737|ref|YP_003541230.1| - 0.053 12.6 0.0 0.12 11.5 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Miro PF08477.8 gi|294494737|ref|YP_003541230.1| - 0.058 13.8 0.0 0.12 12.9 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_17 PF13207.1 gi|294494737|ref|YP_003541230.1| - 0.064 14.0 1.2 0.096 13.5 0.3 1.9 2 1 0 2 2 1 0 AAA domain MobB PF03205.9 gi|294494737|ref|YP_003541230.1| - 0.079 12.6 0.1 0.21 11.2 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF1523 PF07509.6 gi|294494737|ref|YP_003541230.1| - 0.09 12.0 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1523) AAA_14 PF13173.1 gi|294494737|ref|YP_003541230.1| - 0.13 12.2 0.1 0.35 10.7 0.1 2.1 1 1 0 1 1 1 0 AAA domain Fer4_7 PF12838.2 gi|294494738|ref|YP_003541231.1| - 1.7e-05 25.0 10.1 4e-05 23.9 7.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294494738|ref|YP_003541231.1| - 4.7e-05 24.0 11.1 4.7e-05 24.0 7.7 1.8 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|294494738|ref|YP_003541231.1| - 0.00097 18.8 12.7 0.0035 17.1 8.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|294494738|ref|YP_003541231.1| - 0.0015 18.0 15.9 0.0067 15.9 1.7 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294494738|ref|YP_003541231.1| - 0.0032 17.2 17.7 0.12 12.2 2.3 2.9 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|294494738|ref|YP_003541231.1| - 0.007 16.6 13.6 0.16 12.2 9.5 2.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294494738|ref|YP_003541231.1| - 0.019 14.7 12.1 0.27 11.1 0.4 3.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|294494738|ref|YP_003541231.1| - 0.14 12.7 1.0 0.14 12.7 0.7 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|294494738|ref|YP_003541231.1| - 0.27 11.7 11.7 0.64 10.4 1.8 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294494738|ref|YP_003541231.1| - 0.39 10.7 14.1 0.031 14.3 1.2 2.9 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294494738|ref|YP_003541231.1| - 0.94 9.9 14.5 4.6 7.8 2.0 2.8 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|294494738|ref|YP_003541231.1| - 1.8 8.6 16.2 5.3 7.1 2.2 3.1 2 1 0 2 2 2 0 4Fe-4S binding domain CarboxypepD_reg PF13620.1 gi|294494739|ref|YP_003541232.1| - 2e-07 30.9 2.2 1.1e-06 28.5 0.1 3.1 3 0 0 3 3 3 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|294494739|ref|YP_003541232.1| - 0.0015 18.4 0.1 0.0065 16.4 0.0 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) CARDB PF07705.6 gi|294494739|ref|YP_003541232.1| - 0.24 11.4 12.9 0.13 12.2 1.7 3.3 3 0 0 3 3 3 0 CARDB TRAP_beta PF05753.9 gi|294494739|ref|YP_003541232.1| - 0.3 10.2 3.2 0.46 9.6 0.1 2.3 2 0 0 2 2 2 0 Translocon-associated protein beta (TRAPB) DUF11 PF01345.13 gi|294494739|ref|YP_003541232.1| - 3 7.9 17.4 4.3 7.4 3.7 3.9 3 0 0 3 3 3 0 Domain of unknown function DUF11 Xan_ur_permease PF00860.15 gi|294494740|ref|YP_003541233.1| - 2.6e-38 131.5 47.6 3.4e-38 131.1 33.0 1.2 1 0 0 1 1 1 1 Permease family NTP_transferase PF00483.18 gi|294494741|ref|YP_003541234.1| - 2.7e-42 144.7 0.1 3.3e-42 144.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|294494741|ref|YP_003541234.1| - 7e-25 85.3 19.8 1.6e-09 36.7 0.7 4.9 2 1 4 6 6 6 6 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|294494741|ref|YP_003541234.1| - 4.8e-15 55.9 0.0 6.4e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|294494741|ref|YP_003541234.1| - 3.4e-11 42.5 14.4 5.2e-05 22.7 0.7 4.0 3 1 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|294494741|ref|YP_003541234.1| - 3e-06 26.9 0.1 4.8e-06 26.2 0.1 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glyco_tranf_2_3 PF13641.1 gi|294494741|ref|YP_003541234.1| - 0.01 15.6 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Fucokinase PF07959.7 gi|294494741|ref|YP_003541234.1| - 0.071 11.6 1.2 0.83 8.1 0.1 2.5 2 1 1 3 3 3 0 L-fucokinase SIS PF01380.17 gi|294494742|ref|YP_003541235.1| - 1.8e-59 199.0 1.8 6.2e-30 103.4 0.5 2.5 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|294494742|ref|YP_003541235.1| - 1.2e-22 80.2 0.0 3.5e-22 78.7 0.0 1.9 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|294494742|ref|YP_003541235.1| - 4.5e-21 74.9 0.3 5.1e-17 61.6 0.0 2.7 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|294494742|ref|YP_003541235.1| - 3.5e-17 62.3 0.0 8.7e-17 61.0 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|294494742|ref|YP_003541235.1| - 7.8e-06 24.7 0.1 1.4e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF2795 PF11387.3 gi|294494742|ref|YP_003541235.1| - 0.021 14.6 0.0 0.27 11.1 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2795) PGM_PMM_I PF02878.11 gi|294494743|ref|YP_003541236.1| - 4e-36 123.5 0.1 9.6e-36 122.3 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|294494743|ref|YP_003541236.1| - 7.1e-27 93.7 0.0 1.4e-26 92.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|294494743|ref|YP_003541236.1| - 1.2e-17 63.9 0.0 2.3e-17 63.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|294494743|ref|YP_003541236.1| - 1.4e-13 50.5 0.1 3.2e-13 49.4 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_18 PF12847.2 gi|294494743|ref|YP_003541236.1| - 0.11 13.0 0.0 0.3 11.6 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain NTP_transferase PF00483.18 gi|294494744|ref|YP_003541237.1| - 9e-46 156.1 0.0 1.2e-45 155.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|294494744|ref|YP_003541237.1| - 1e-15 58.2 0.0 1.3e-15 57.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|294494744|ref|YP_003541237.1| - 3e-15 54.9 30.4 2.2e-07 30.0 3.0 4.7 2 1 3 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|294494744|ref|YP_003541237.1| - 1.7e-06 27.4 3.5 1.7e-06 27.4 2.4 5.0 5 1 0 5 5 5 1 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|294494744|ref|YP_003541237.1| - 0.0011 18.5 0.0 0.0037 16.8 0.0 1.8 2 1 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|294494744|ref|YP_003541237.1| - 0.028 14.0 0.0 0.092 12.3 0.0 1.7 2 0 0 2 2 2 0 Cytidylyltransferase Smr PF01713.16 gi|294494744|ref|YP_003541237.1| - 0.04 14.1 0.5 0.36 11.0 0.0 2.3 2 0 0 2 2 2 0 Smr domain TrkH PF02386.11 gi|294494745|ref|YP_003541238.1| - 1.4e-60 204.8 21.3 1.4e-60 204.8 14.8 2.5 3 0 0 3 3 3 2 Cation transport protein DUF433 PF04255.9 gi|294494746|ref|YP_003541239.1| - 3.1e-23 80.9 0.0 3.7e-23 80.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF433) RNase_Zc3h12a PF11977.3 gi|294494747|ref|YP_003541240.1| - 0.031 14.1 0.0 0.04 13.7 0.0 1.2 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain LysE PF01810.13 gi|294494748|ref|YP_003541241.1| - 9.5e-19 67.4 7.9 1.2e-18 67.1 5.5 1.1 1 0 0 1 1 1 1 LysE type translocator DUF443 PF04276.7 gi|294494748|ref|YP_003541241.1| - 0.66 9.3 7.9 1.8 7.9 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF443) DUF4014 PF13198.1 gi|294494748|ref|YP_003541241.1| - 6.6 7.2 6.6 11 6.5 1.1 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF4014) DUF4149 PF13664.1 gi|294494748|ref|YP_003541241.1| - 8.3 6.5 11.6 1.2 9.1 2.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) OrfB_IS605 PF01385.14 gi|294494752|ref|YP_003541245.1| - 1.6e-45 155.3 3.2 1.6e-45 155.3 2.2 1.5 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|294494752|ref|YP_003541245.1| - 9.4e-22 76.4 1.2 1.8e-21 75.5 0.8 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|294494752|ref|YP_003541245.1| - 3.1e-19 68.0 2.4 8.3e-19 66.6 1.7 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HypA PF01155.14 gi|294494752|ref|YP_003541245.1| - 0.04 13.5 0.3 0.093 12.4 0.2 1.7 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-piccolo PF05715.8 gi|294494752|ref|YP_003541245.1| - 0.076 13.0 2.3 0.18 11.8 1.6 1.5 1 0 0 1 1 1 0 Piccolo Zn-finger DZR PF12773.2 gi|294494752|ref|YP_003541245.1| - 0.082 12.7 0.9 0.19 11.5 0.6 1.6 1 0 0 1 1 1 0 Double zinc ribbon DUF1970 PF09301.5 gi|294494752|ref|YP_003541245.1| - 0.087 12.8 0.1 13 5.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1970) Prok-RING_1 PF14446.1 gi|294494752|ref|YP_003541245.1| - 0.1 12.3 0.8 0.25 11.0 0.6 1.6 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|294494752|ref|YP_003541245.1| - 0.34 10.1 2.4 4.5 6.6 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-Sec23_Sec24 PF04810.10 gi|294494752|ref|YP_003541245.1| - 3.5 7.2 6.7 6.5 6.4 0.6 2.6 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger zf-RanBP PF00641.13 gi|294494752|ref|YP_003541245.1| - 7.8 5.7 9.0 4.9 6.3 0.8 2.6 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others TRIQK PF15168.1 gi|294494753|ref|YP_003541246.1| - 0.08 12.8 1.4 0.16 11.9 1.0 1.5 1 0 0 1 1 1 0 Triple QxxK/R motif-containing protein family Glucos_trans_II PF14264.1 gi|294494753|ref|YP_003541246.1| - 0.21 10.5 6.0 0.31 10.0 4.1 1.2 1 0 0 1 1 1 0 Glucosyl transferase GtrII DctQ PF04290.7 gi|294494753|ref|YP_003541246.1| - 0.35 10.6 4.5 0.53 10.0 3.1 1.2 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component Epimerase PF01370.16 gi|294494754|ref|YP_003541247.1| - 0.0084 15.5 0.0 0.0087 15.5 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Rubrerythrin PF02915.12 gi|294494755|ref|YP_003541248.1| - 6.6e-33 113.9 6.5 8.5e-33 113.5 4.5 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|294494755|ref|YP_003541248.1| - 1.5e-07 31.2 3.5 2e-07 30.8 2.4 1.3 1 0 0 1 1 1 1 Ferritin-like domain HypA PF01155.14 gi|294494755|ref|YP_003541248.1| - 0.0078 15.8 0.2 0.017 14.7 0.1 1.6 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family UvrD_C PF13361.1 gi|294494755|ref|YP_003541248.1| - 0.012 15.1 0.8 0.012 15.1 0.5 1.6 2 0 0 2 2 2 0 UvrD-like helicase C-terminal domain Bac_luciferase PF00296.15 gi|294494755|ref|YP_003541248.1| - 0.12 11.4 0.4 0.18 10.9 0.3 1.1 1 0 0 1 1 1 0 Luciferase-like monooxygenase DUF4379 PF14311.1 gi|294494755|ref|YP_003541248.1| - 0.24 11.2 2.9 0.31 10.8 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) DUF2296 PF10058.4 gi|294494755|ref|YP_003541248.1| - 0.31 10.8 0.2 0.31 10.8 0.1 2.3 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) SIMPL PF04402.9 gi|294494756|ref|YP_003541249.1| - 3e-52 177.5 4.5 3.4e-52 177.3 3.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) YbaB_DNA_bd PF02575.11 gi|294494756|ref|YP_003541249.1| - 0.0067 16.2 4.0 0.0078 16.0 0.1 2.7 3 1 0 3 3 3 1 YbaB/EbfC DNA-binding family MacB_PCD PF12704.2 gi|294494756|ref|YP_003541249.1| - 0.067 12.7 2.1 0.1 12.2 1.5 1.4 1 1 0 1 1 1 0 MacB-like periplasmic core domain DUF2238 PF09997.4 gi|294494757|ref|YP_003541250.1| - 0.0002 20.7 24.9 0.00046 19.6 1.5 5.2 1 1 1 3 3 3 2 Predicted membrane protein (DUF2238) Tic20 PF09685.5 gi|294494758|ref|YP_003541251.1| - 1.4e-10 41.1 6.8 1.8e-10 40.7 4.7 1.0 1 0 0 1 1 1 1 Tic20-like protein DUF2269 PF10027.4 gi|294494758|ref|YP_003541251.1| - 0.092 12.5 3.6 0.1 12.3 2.5 1.0 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2269) DUF606 PF04657.8 gi|294494758|ref|YP_003541251.1| - 0.1 12.7 7.1 0.31 11.1 4.8 1.7 1 1 1 2 2 2 0 Protein of unknown function, DUF606 DUF3816 PF12822.2 gi|294494758|ref|YP_003541251.1| - 0.2 11.5 11.6 0.37 10.6 8.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) 5TM-5TMR_LYT PF07694.7 gi|294494758|ref|YP_003541251.1| - 0.26 10.6 9.1 0.52 9.6 6.3 1.5 1 1 0 1 1 1 0 5TMR of 5TMR-LYT Na_Ca_ex PF01699.19 gi|294494758|ref|YP_003541251.1| - 0.32 10.5 8.0 0.41 10.2 5.6 1.1 1 0 0 1 1 1 0 Sodium/calcium exchanger protein DUF4271 PF14093.1 gi|294494758|ref|YP_003541251.1| - 0.39 10.3 7.9 0.52 9.9 5.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4271) Yip1 PF04893.12 gi|294494758|ref|YP_003541251.1| - 0.5 9.8 8.8 0.69 9.3 6.1 1.2 1 0 0 1 1 1 0 Yip1 domain UPF0259 PF06790.6 gi|294494758|ref|YP_003541251.1| - 1.2 8.5 10.9 1.9 7.8 7.6 1.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0259) MNHE PF01899.11 gi|294494758|ref|YP_003541251.1| - 1.8 8.2 5.3 2 8.0 2.7 1.7 1 1 1 2 2 2 0 Na+/H+ ion antiporter subunit DUF2407_C PF13373.1 gi|294494758|ref|YP_003541251.1| - 4.5 7.1 5.6 1.1 9.1 1.9 1.5 1 1 1 2 2 2 0 DUF2407 C-terminal domain DUF1282 PF06930.7 gi|294494758|ref|YP_003541251.1| - 6.9 6.2 11.0 9.4 5.8 7.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) DUF3268 PF11672.3 gi|294494760|ref|YP_003541253.1| - 0.019 15.0 0.4 0.02 14.9 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) Mut7-C PF01927.11 gi|294494760|ref|YP_003541253.1| - 0.043 13.7 0.5 0.044 13.7 0.3 1.0 1 0 0 1 1 1 0 Mut7-C RNAse domain zf-FCS PF06467.9 gi|294494760|ref|YP_003541253.1| - 0.062 12.9 0.2 4.8 6.8 0.0 2.1 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif zf-3CxxC PF13695.1 gi|294494760|ref|YP_003541253.1| - 0.088 13.0 0.7 0.1 12.8 0.5 1.0 1 0 0 1 1 1 0 Zinc-binding domain Lar_restr_allev PF14354.1 gi|294494760|ref|YP_003541253.1| - 0.11 12.7 0.2 0.13 12.5 0.1 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ribonuclease PF00545.15 gi|294494760|ref|YP_003541253.1| - 0.15 12.1 0.0 0.18 11.8 0.0 1.1 1 0 0 1 1 1 0 ribonuclease XPA_N PF01286.13 gi|294494760|ref|YP_003541253.1| - 0.2 11.3 0.6 0.2 11.3 0.4 1.8 2 0 0 2 2 2 0 XPA protein N-terminal zf-C4_ClpX PF06689.8 gi|294494760|ref|YP_003541253.1| - 3.4 7.2 8.7 3.7e+02 0.7 6.0 2.3 1 1 0 1 1 1 0 ClpX C4-type zinc finger DUF457 PF04307.9 gi|294494761|ref|YP_003541254.1| - 1.3e-17 63.5 7.8 1.7e-17 63.2 5.4 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) MscS_TM PF12794.2 gi|294494761|ref|YP_003541254.1| - 0.0067 15.0 1.2 0.011 14.3 0.9 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel inner membrane domain 1 PrsW-protease PF13367.1 gi|294494761|ref|YP_003541254.1| - 7.9 5.6 9.6 0.2 10.8 1.6 1.9 2 1 0 3 3 3 0 Protease prsW family Peptidase_C1 PF00112.18 gi|294494762|ref|YP_003541255.1| - 1.1e-26 94.1 0.1 2.1e-26 93.1 0.1 1.5 1 0 0 1 1 1 1 Papain family cysteine protease fn3 PF00041.16 gi|294494762|ref|YP_003541255.1| - 9.8e-05 22.4 7.4 0.0068 16.5 0.1 3.0 2 1 0 2 2 2 2 Fibronectin type III domain Peptidase_C1_2 PF03051.10 gi|294494762|ref|YP_003541255.1| - 0.0091 14.5 0.2 1.5 7.2 0.0 2.2 2 0 0 2 2 2 2 Peptidase C1-like family Plasmid_stabil PF05016.9 gi|294494763|ref|YP_003541256.1| - 1.6e-07 31.6 0.1 1.7e-07 31.5 0.1 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|294494763|ref|YP_003541256.1| - 0.00091 19.1 0.0 0.0012 18.8 0.0 1.1 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) PCMT PF01135.14 gi|294494764|ref|YP_003541257.1| - 0.075 12.5 0.1 0.081 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF2119 PF09892.4 gi|294494764|ref|YP_003541257.1| - 0.1 11.9 0.1 0.1 11.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2119) DNA_pol_alpha_N PF12254.3 gi|294494764|ref|YP_003541257.1| - 0.1 12.3 0.8 0.13 12.1 0.6 1.2 1 0 0 1 1 1 0 DNA polymerase alpha subunit p180 N terminal DUF3901 PF13040.1 gi|294494764|ref|YP_003541257.1| - 0.27 10.5 2.3 0.47 9.7 1.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3901) BCAS2 PF05700.6 gi|294494765|ref|YP_003541258.1| - 0.014 14.8 0.4 0.016 14.6 0.3 1.0 1 0 0 1 1 1 0 Breast carcinoma amplified sequence 2 (BCAS2) DUF515 PF04415.7 gi|294494765|ref|YP_003541258.1| - 0.039 12.1 0.6 0.04 12.1 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF515) SRP54_N PF02881.14 gi|294494765|ref|YP_003541258.1| - 0.047 13.8 0.2 0.092 12.8 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, helical bundle domain DUF1160 PF06648.6 gi|294494765|ref|YP_003541258.1| - 0.063 13.0 0.2 0.067 12.9 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1160) DUF217 PF02697.9 gi|294494765|ref|YP_003541258.1| - 0.065 13.5 2.1 0.12 12.5 1.4 1.6 1 1 0 1 1 1 0 Uncharacterized ACR, COG1753 DUF919 PF06034.6 gi|294494765|ref|YP_003541258.1| - 0.08 12.5 2.6 1.2 8.7 0.1 2.4 1 1 1 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) FliG_M PF14841.1 gi|294494765|ref|YP_003541258.1| - 0.11 12.5 0.1 0.13 12.2 0.1 1.2 1 0 0 1 1 1 0 FliG middle domain Fe-ADH PF00465.14 gi|294494765|ref|YP_003541258.1| - 0.14 10.7 0.1 0.15 10.6 0.1 1.1 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase Plasmid_stabil PF05016.9 gi|294494766|ref|YP_003541259.1| - 8.9e-07 29.2 0.1 1.1e-06 28.9 0.0 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|294494766|ref|YP_003541259.1| - 0.015 15.3 0.1 0.017 15.1 0.1 1.1 1 0 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) HHH_4 PF14490.1 gi|294494766|ref|YP_003541259.1| - 0.031 14.0 0.0 0.059 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix containing domain DUF2136 PF09907.4 gi|294494766|ref|YP_003541259.1| - 0.037 14.0 0.1 0.058 13.4 0.1 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2136) NosD PF05048.8 gi|294494767|ref|YP_003541260.1| - 1.7e-41 141.9 52.8 5.6e-34 117.3 18.9 5.2 4 2 2 6 6 6 2 Periplasmic copper-binding protein (NosD) Peptidase_C1 PF00112.18 gi|294494767|ref|YP_003541260.1| - 2.3e-26 93.0 0.6 5.7e-26 91.7 0.4 1.7 1 0 0 1 1 1 1 Papain family cysteine protease Beta_helix PF13229.1 gi|294494767|ref|YP_003541260.1| - 4.4e-15 55.7 53.8 4.3e-09 36.3 15.2 5.2 3 2 2 5 5 5 2 Right handed beta helix region PKD PF00801.15 gi|294494767|ref|YP_003541260.1| - 1.3e-14 53.7 1.2 5.9e-14 51.5 0.8 2.1 1 0 0 1 1 1 1 PKD domain Epimerase PF01370.16 gi|294494768|ref|YP_003541261.1| - 4.2e-49 167.1 0.0 4.9e-49 166.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|294494768|ref|YP_003541261.1| - 3.6e-25 88.2 0.0 4.6e-25 87.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|294494768|ref|YP_003541261.1| - 4e-19 68.6 0.0 4.1e-18 65.2 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|294494768|ref|YP_003541261.1| - 1.5e-17 63.4 0.0 1.9e-17 63.0 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|294494768|ref|YP_003541261.1| - 2e-14 53.1 0.2 6.4e-13 48.2 0.1 2.2 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|294494768|ref|YP_003541261.1| - 2.1e-14 53.9 0.0 2.8e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|294494768|ref|YP_003541261.1| - 9.3e-08 31.6 0.0 1.3e-06 27.8 0.0 2.0 2 0 0 2 2 2 1 NmrA-like family adh_short PF00106.20 gi|294494768|ref|YP_003541261.1| - 2e-07 31.0 0.0 9e-07 28.9 0.0 1.9 2 0 0 2 2 2 1 short chain dehydrogenase Saccharop_dh PF03435.13 gi|294494768|ref|YP_003541261.1| - 0.0043 16.0 0.0 0.0061 15.5 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase KR PF08659.5 gi|294494768|ref|YP_003541261.1| - 0.0056 16.3 0.0 0.012 15.3 0.0 1.5 1 1 0 1 1 1 1 KR domain TrkA_N PF02254.13 gi|294494768|ref|YP_003541261.1| - 0.054 13.4 0.0 0.094 12.7 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_2 PF03446.10 gi|294494768|ref|YP_003541261.1| - 0.087 12.6 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase MannoseP_isomer PF01050.13 gi|294494769|ref|YP_003541262.1| - 2.3e-58 196.0 0.7 3.7e-58 195.4 0.5 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.18 gi|294494769|ref|YP_003541262.1| - 5e-56 189.7 0.0 1.8e-55 187.9 0.0 1.8 2 0 0 2 2 2 1 Nucleotidyl transferase Cupin_2 PF07883.6 gi|294494769|ref|YP_003541262.1| - 4.3e-11 42.1 0.3 7.2e-11 41.4 0.2 1.4 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.2 gi|294494769|ref|YP_003541262.1| - 4.9e-07 29.9 0.0 1e-06 28.9 0.0 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain AraC_binding PF02311.14 gi|294494769|ref|YP_003541262.1| - 0.0068 16.1 0.1 0.013 15.1 0.1 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain IspD PF01128.14 gi|294494769|ref|YP_003541262.1| - 0.0094 15.4 0.0 0.018 14.5 0.0 1.5 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF2917 PF11142.3 gi|294494769|ref|YP_003541262.1| - 0.084 12.0 0.0 0.17 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2917) DUF3046 PF11248.3 gi|294494769|ref|YP_003541262.1| - 0.12 12.3 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3046) Epimerase PF01370.16 gi|294494770|ref|YP_003541263.1| - 3.1e-72 242.8 0.0 3.7e-72 242.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|294494770|ref|YP_003541263.1| - 1.2e-07 30.9 0.0 2e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|294494770|ref|YP_003541263.1| - 7.5e-05 21.7 0.0 0.00011 21.2 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase_Csub PF13950.1 gi|294494770|ref|YP_003541263.1| - 0.021 14.7 0.0 0.043 13.7 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit Polysacc_synt PF01943.12 gi|294494771|ref|YP_003541264.1| - 2.5e-35 122.1 28.5 2.5e-35 122.1 19.8 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|294494771|ref|YP_003541264.1| - 5.2e-14 52.2 8.0 5.2e-14 52.2 5.6 4.7 3 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|294494771|ref|YP_003541264.1| - 3.3e-11 43.1 25.0 3.3e-11 43.1 17.3 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Peptidase_U40 PF10464.4 gi|294494771|ref|YP_003541264.1| - 0.093 12.1 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Peptidase U40 Methyltransf_21 PF05050.7 gi|294494772|ref|YP_003541265.1| - 3e-14 53.3 0.0 3.9e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_22 PF13383.1 gi|294494772|ref|YP_003541265.1| - 0.0032 17.0 0.2 0.0049 16.4 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain Polyoma_coat PF00718.15 gi|294494772|ref|YP_003541265.1| - 0.019 13.9 0.1 0.13 11.1 0.0 2.2 2 1 1 3 3 3 0 Polyomavirus coat protein Sulfotransfer_1 PF00685.22 gi|294494773|ref|YP_003541266.1| - 6.8e-21 74.7 0.4 3.4e-20 72.4 0.3 1.9 1 1 0 1 1 1 1 Sulfotransferase domain Sulphotransf PF09037.5 gi|294494773|ref|YP_003541266.1| - 0.037 13.5 0.0 7.3 5.9 0.0 3.0 2 1 1 3 3 3 0 Stf0 sulphotransferase Methyltransf_21 PF05050.7 gi|294494774|ref|YP_003541267.1| - 5.8e-16 58.8 0.3 7.2e-16 58.5 0.2 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_22 PF13383.1 gi|294494774|ref|YP_003541267.1| - 1.7e-15 57.2 1.0 4.2e-15 55.9 0.7 1.5 1 1 0 1 1 1 1 Methyltransferase domain KH_5 PF13184.1 gi|294494774|ref|YP_003541267.1| - 0.034 13.9 0.4 0.083 12.7 0.2 1.7 1 0 0 1 1 1 0 NusA-like KH domain GNT-I PF03071.10 gi|294494775|ref|YP_003541268.1| - 1.9e-07 30.0 1.2 3.1e-07 29.2 0.8 1.4 1 0 0 1 1 1 1 GNT-I family Glycos_transf_2 PF00535.21 gi|294494775|ref|YP_003541268.1| - 1.2e-06 28.3 0.6 1.9e-06 27.6 0.4 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 GPAT_N PF14829.1 gi|294494775|ref|YP_003541268.1| - 0.075 12.7 1.0 20 4.9 0.0 3.2 3 0 0 3 3 3 0 Glycerol-3-phosphate acyltransferase N-terminal Glycos_transf_1 PF00534.15 gi|294494776|ref|YP_003541269.1| - 7e-23 80.8 0.0 1.7e-22 79.6 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|294494776|ref|YP_003541269.1| - 1.5e-14 54.3 0.0 2.7e-14 53.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|294494776|ref|YP_003541269.1| - 1.1e-09 38.4 0.0 1.9e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|294494776|ref|YP_003541269.1| - 1.7e-08 34.4 0.0 3.4e-08 33.4 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|294494776|ref|YP_003541269.1| - 8.6e-06 25.9 0.0 1.4e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|294494776|ref|YP_003541269.1| - 0.0078 16.0 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_20 PF00982.16 gi|294494776|ref|YP_003541269.1| - 0.016 13.7 0.0 0.023 13.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 20 DNA_pol3_delta PF06144.8 gi|294494776|ref|YP_003541269.1| - 0.02 14.3 0.1 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit Epimerase PF01370.16 gi|294494777|ref|YP_003541270.1| - 3e-77 259.2 0.0 3.6e-77 258.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|294494777|ref|YP_003541270.1| - 1e-09 37.7 0.0 3.8e-09 35.8 0.0 1.9 2 1 0 2 2 2 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|294494777|ref|YP_003541270.1| - 1.3e-06 27.5 0.0 0.0001 21.3 0.0 2.3 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NmrA PF05368.8 gi|294494777|ref|YP_003541270.1| - 0.00065 19.0 0.1 0.058 12.6 0.0 2.2 1 1 1 2 2 2 2 NmrA-like family NAD_binding_10 PF13460.1 gi|294494777|ref|YP_003541270.1| - 0.0051 16.8 0.0 0.011 15.7 0.0 1.6 1 1 0 1 1 1 1 NADH(P)-binding ETF PF01012.16 gi|294494777|ref|YP_003541270.1| - 0.11 12.2 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Electron transfer flavoprotein domain Semialdhyde_dh PF01118.19 gi|294494777|ref|YP_003541270.1| - 0.12 12.7 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Glycos_transf_2 PF00535.21 gi|294494778|ref|YP_003541271.1| - 3.1e-33 114.8 2.0 4.8e-33 114.2 1.4 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|294494778|ref|YP_003541271.1| - 8.6e-12 45.3 0.0 1.3e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.15 gi|294494779|ref|YP_003541272.1| - 2.2e-38 131.3 0.3 6.9e-38 129.7 0.1 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|294494779|ref|YP_003541272.1| - 3.4e-16 59.6 0.0 1.3e-15 57.7 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|294494779|ref|YP_003541272.1| - 2e-11 43.9 0.1 3.9e-11 42.9 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|294494779|ref|YP_003541272.1| - 1.4e-10 41.1 1.9 7.7e-10 38.7 1.3 2.3 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|294494779|ref|YP_003541272.1| - 3.3e-10 40.3 0.0 5.3e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|294494779|ref|YP_003541272.1| - 0.00031 20.9 0.0 0.0035 17.5 0.0 2.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 DUF3492 PF11997.3 gi|294494779|ref|YP_003541272.1| - 0.00065 19.3 0.2 0.0016 18.0 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF3492) Glyco_transf_5 PF08323.6 gi|294494779|ref|YP_003541272.1| - 0.0052 16.3 1.5 0.014 14.8 1.0 1.6 1 1 0 1 1 1 1 Starch synthase catalytic domain DDE_Tnp_1_2 PF13586.1 gi|294494780|ref|YP_003541273.1| - 4.9e-08 33.0 6.6 6.7e-06 26.2 2.5 3.0 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|294494780|ref|YP_003541273.1| - 2.6e-06 27.1 0.0 3.1e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain Glycos_transf_2 PF00535.21 gi|294494781|ref|YP_003541274.1| - 1.2e-27 96.6 0.5 2.1e-27 95.8 0.3 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|294494781|ref|YP_003541274.1| - 3.3e-13 49.9 0.0 4.6e-13 49.4 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|294494781|ref|YP_003541274.1| - 0.00027 20.2 2.5 0.026 13.7 0.1 2.3 1 1 1 2 2 2 2 Glycosyltransferase like family DUF4116 PF13475.1 gi|294494781|ref|YP_003541274.1| - 0.0079 15.6 0.4 0.045 13.2 0.0 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4116) PMT_2 PF13231.1 gi|294494782|ref|YP_003541275.1| - 3.7e-09 36.6 25.9 3.7e-09 36.6 18.0 5.4 4 2 1 6 6 6 2 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF354 PF04007.7 gi|294494783|ref|YP_003541276.1| - 3.9e-32 111.4 0.2 4.3e-32 111.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glycos_transf_2 PF00535.21 gi|294494784|ref|YP_003541277.1| - 5.6e-23 81.4 0.0 8.4e-23 80.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|294494784|ref|YP_003541277.1| - 5.5e-07 29.6 0.0 6.7e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Acetyltransf_CG PF14542.1 gi|294494784|ref|YP_003541277.1| - 0.00034 20.4 0.0 0.00079 19.2 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase S1_2 PF13509.1 gi|294494785|ref|YP_003541278.1| - 0.0024 17.7 0.0 0.0034 17.2 0.0 1.2 1 0 0 1 1 1 1 S1 domain Antitoxin-MazE PF04014.13 gi|294494785|ref|YP_003541278.1| - 0.073 12.8 0.0 0.14 11.9 0.0 1.6 1 1 0 1 1 1 0 Antidote-toxin recognition MazE PemK PF02452.12 gi|294494786|ref|YP_003541279.1| - 3e-12 46.6 0.1 3.4e-12 46.5 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein Arg_repressor PF01316.16 gi|294494786|ref|YP_003541279.1| - 0.12 11.9 0.6 0.18 11.3 0.5 1.3 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain TrmB PF01978.14 gi|294494787|ref|YP_003541280.1| - 4.8e-11 42.2 0.2 1.1e-06 28.1 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|294494787|ref|YP_003541280.1| - 2.1e-10 40.2 0.0 2.5e-05 23.9 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|294494787|ref|YP_003541280.1| - 4.6e-10 39.0 0.1 1.2e-06 28.1 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.1 gi|294494787|ref|YP_003541280.1| - 6.1e-10 38.3 0.5 5.6e-05 22.4 0.1 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|294494787|ref|YP_003541280.1| - 5.9e-09 36.1 0.1 2.9e-05 24.3 0.0 2.4 2 0 0 2 2 2 2 Winged helix DNA-binding domain MarR PF01047.17 gi|294494787|ref|YP_003541280.1| - 6.9e-09 35.2 1.0 0.001 18.7 0.1 2.4 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.15 gi|294494787|ref|YP_003541280.1| - 1.8e-08 33.8 1.2 0.00017 21.2 0.4 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_36 PF13730.1 gi|294494787|ref|YP_003541280.1| - 1.7e-07 31.2 1.5 0.011 15.8 0.1 3.4 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_IclR PF09339.5 gi|294494787|ref|YP_003541280.1| - 2.1e-07 30.4 0.0 0.004 16.7 0.0 2.3 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|294494787|ref|YP_003541280.1| - 9e-07 28.6 0.2 0.048 13.4 0.0 2.3 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_45 PF14947.1 gi|294494787|ref|YP_003541280.1| - 2e-06 27.5 0.6 0.045 13.5 0.1 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix HTH_38 PF13936.1 gi|294494787|ref|YP_003541280.1| - 4.2e-06 26.2 0.3 0.011 15.3 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain Rrf2 PF02082.15 gi|294494787|ref|YP_003541280.1| - 1.8e-05 24.7 0.6 0.057 13.5 0.0 2.6 2 0 0 2 2 2 2 Transcriptional regulator GntR PF00392.16 gi|294494787|ref|YP_003541280.1| - 5.5e-05 22.5 0.0 0.0063 15.9 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Rio2_N PF09202.6 gi|294494787|ref|YP_003541280.1| - 0.00022 21.2 0.2 0.38 10.8 0.1 2.5 2 0 0 2 2 2 2 Rio2, N-terminal HTH_11 PF08279.7 gi|294494787|ref|YP_003541280.1| - 0.00031 20.3 0.7 0.93 9.1 0.1 2.7 3 0 0 3 3 2 2 HTH domain HTH_23 PF13384.1 gi|294494787|ref|YP_003541280.1| - 0.00041 19.9 0.0 1.2 8.9 0.0 2.5 2 0 0 2 2 2 2 Homeodomain-like domain Penicillinase_R PF03965.11 gi|294494787|ref|YP_003541280.1| - 0.00051 20.1 0.6 0.14 12.2 0.0 2.5 2 0 0 2 2 2 1 Penicillinase repressor DUF4423 PF14394.1 gi|294494787|ref|YP_003541280.1| - 0.00057 19.4 0.1 0.014 14.9 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.14 gi|294494787|ref|YP_003541280.1| - 0.0013 18.6 0.2 0.034 14.0 0.1 2.6 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_9 PF08221.6 gi|294494787|ref|YP_003541280.1| - 0.0026 17.5 2.1 0.91 9.4 0.3 3.3 2 1 1 3 3 3 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_28 PF13518.1 gi|294494787|ref|YP_003541280.1| - 0.0054 16.7 0.0 0.57 10.2 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|294494787|ref|YP_003541280.1| - 0.0055 16.6 0.3 0.014 15.3 0.0 1.7 2 0 0 2 2 1 1 Sulfolobus plasmid regulatory protein DUF2582 PF10771.4 gi|294494787|ref|YP_003541280.1| - 0.0058 16.4 0.0 0.019 14.7 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2582) HTH_29 PF13551.1 gi|294494787|ref|YP_003541280.1| - 0.006 16.7 0.0 2.7 8.1 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.1 gi|294494787|ref|YP_003541280.1| - 0.006 16.7 0.4 0.99 9.6 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain DUF1803 PF08820.5 gi|294494787|ref|YP_003541280.1| - 0.0062 16.2 1.1 2.9 7.6 0.0 3.3 2 1 1 3 3 3 1 Domain of unknown function (DUF1803) Phage_rep_org_N PF09681.5 gi|294494787|ref|YP_003541280.1| - 0.0097 15.4 0.1 4.7 6.8 0.0 2.5 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_30 PF13556.1 gi|294494787|ref|YP_003541280.1| - 0.015 14.8 0.1 0.046 13.3 0.0 1.8 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain TFIIE_alpha PF02002.12 gi|294494787|ref|YP_003541280.1| - 0.016 14.6 0.5 2.8 7.4 0.0 2.9 3 0 0 3 3 3 0 TFIIE alpha subunit B-block_TFIIIC PF04182.7 gi|294494787|ref|YP_003541280.1| - 0.016 15.0 0.9 0.2 11.5 0.1 2.6 2 1 0 2 2 2 0 B-block binding subunit of TFIIIC HTH_34 PF13601.1 gi|294494787|ref|YP_003541280.1| - 0.018 15.0 0.5 3.6 7.6 0.0 2.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF742 PF05331.6 gi|294494787|ref|YP_003541280.1| - 0.021 14.4 0.0 0.81 9.3 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF742) NUMOD1 PF07453.8 gi|294494787|ref|YP_003541280.1| - 0.03 14.1 3.2 1.8 8.5 0.2 3.2 2 0 0 2 2 2 0 NUMOD1 domain RuvB_C PF05491.8 gi|294494787|ref|YP_003541280.1| - 0.048 13.2 0.2 0.24 11.0 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus Phage_rep_O PF04492.8 gi|294494787|ref|YP_003541280.1| - 0.072 13.3 0.0 19 5.5 0.0 2.4 2 0 0 2 2 2 0 Bacteriophage replication protein O HTH_Tnp_ISL3 PF13542.1 gi|294494787|ref|YP_003541280.1| - 0.084 12.0 0.4 2.3 7.4 0.0 2.7 3 0 0 3 3 2 0 Helix-turn-helix domain of transposase family ISL3 GerE PF00196.14 gi|294494787|ref|YP_003541280.1| - 0.17 11.2 2.0 8.4 5.7 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family DUF2204 PF09970.4 gi|294494788|ref|YP_003541281.1| - 0.0013 18.2 0.2 0.022 14.2 0.1 2.3 1 1 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) ACT_4 PF13291.1 gi|294494788|ref|YP_003541281.1| - 0.035 14.4 0.0 0.07 13.4 0.0 1.5 1 0 0 1 1 1 0 ACT domain Tn7_Tnp_TnsA_C PF08721.6 gi|294494789|ref|YP_003541282.1| - 0.002 18.1 1.2 0.049 13.6 0.2 3.0 3 0 0 3 3 3 1 TnsA endonuclease C terminal HTH_11 PF08279.7 gi|294494789|ref|YP_003541282.1| - 0.016 14.8 0.3 1.4 8.6 0.0 3.3 3 0 0 3 3 3 0 HTH domain DUF4254 PF14063.1 gi|294494789|ref|YP_003541282.1| - 0.054 13.0 0.1 0.095 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4254) Transglut_core PF01841.14 gi|294494793|ref|YP_003541286.1| - 1.2e-16 60.9 0.1 4.2e-16 59.1 0.0 2.0 2 0 0 2 2 1 1 Transglutaminase-like superfamily A2M_N PF01835.14 gi|294494793|ref|YP_003541286.1| - 9.2e-12 45.0 9.4 0.15 12.3 0.0 9.6 10 0 0 10 10 10 2 MG2 domain Arrestin_C PF02752.17 gi|294494793|ref|YP_003541286.1| - 0.00011 22.2 2.1 2.9 7.9 0.0 5.8 6 0 0 6 6 6 1 Arrestin (or S-antigen), C-terminal domain IncA PF04156.9 gi|294494793|ref|YP_003541286.1| - 0.00037 20.1 2.5 0.00037 20.1 1.8 2.3 2 0 0 2 2 2 1 IncA protein DUF11 PF01345.13 gi|294494793|ref|YP_003541286.1| - 0.0053 16.7 0.2 0.0053 16.7 0.1 9.1 12 0 0 12 12 10 3 Domain of unknown function DUF11 DUF4231 PF14015.1 gi|294494793|ref|YP_003541286.1| - 0.022 14.7 0.2 0.23 11.4 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF4231) SseC PF04888.7 gi|294494793|ref|YP_003541286.1| - 0.038 13.3 18.2 0.066 12.5 12.6 1.3 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family CCDC71L PF15374.1 gi|294494793|ref|YP_003541286.1| - 0.18 11.0 3.2 0.29 10.4 2.2 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 71L DUF3007 PF11460.3 gi|294494793|ref|YP_003541286.1| - 0.2 11.7 0.8 0.51 10.4 0.5 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) DUF106 PF01956.11 gi|294494793|ref|YP_003541286.1| - 0.29 10.6 5.0 0.56 9.7 3.4 1.3 1 0 0 1 1 1 0 Integral membrane protein DUF106 Pilt PF15453.1 gi|294494793|ref|YP_003541286.1| - 0.71 9.4 11.0 1.2 8.7 7.6 1.2 1 0 0 1 1 1 0 Protein incorporated later into Tight Junctions OmpH PF03938.9 gi|294494793|ref|YP_003541286.1| - 1.7 8.5 16.5 0.89 9.4 9.7 1.8 2 0 0 2 2 1 0 Outer membrane protein (OmpH-like) Ycf1 PF05758.7 gi|294494793|ref|YP_003541286.1| - 2.7 5.6 14.2 4 5.0 9.9 1.1 1 0 0 1 1 1 0 Ycf1 DUF4407 PF14362.1 gi|294494793|ref|YP_003541286.1| - 9.7 5.0 9.9 18 4.1 6.9 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) OrfB_Zn_ribbon PF07282.6 gi|294494794|ref|YP_003541287.1| - 7.3e-22 76.8 1.3 1.9e-21 75.5 0.9 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|294494794|ref|YP_003541287.1| - 5.3e-15 55.4 2.5 9.8e-15 54.5 1.7 1.5 1 0 0 1 1 1 1 Probable transposase PKD PF00801.15 gi|294494795|ref|YP_003541288.1| - 1.5e-09 37.4 7.1 1.5e-09 37.4 4.9 6.2 6 2 1 7 7 7 2 PKD domain Big_3_4 PF13754.1 gi|294494795|ref|YP_003541288.1| - 0.00032 20.9 105.7 0.00073 19.8 1.5 12.8 12 2 3 15 15 15 7 Bacterial Ig-like domain (group 3) DUF4175 PF13779.1 gi|294494795|ref|YP_003541288.1| - 0.28 8.8 0.3 11 3.5 0.0 2.8 4 0 0 4 4 4 0 Domain of unknown function (DUF4175) NosD PF05048.8 gi|294494796|ref|YP_003541289.1| - 2.2e-86 288.8 130.2 4.8e-46 156.8 43.3 7.7 3 2 3 7 7 7 5 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|294494796|ref|YP_003541289.1| - 2.1e-32 112.0 203.2 4.3e-18 65.5 31.8 8.5 2 2 5 8 8 8 5 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|294494796|ref|YP_003541289.1| - 0.0053 16.9 113.5 0.02 15.0 17.3 7.2 4 3 1 5 5 5 3 Pectate lyase superfamily protein Peptidase_S8 PF00082.17 gi|294494797|ref|YP_003541290.1| - 2.1e-51 174.7 3.8 2.1e-51 174.7 2.7 1.8 2 0 0 2 2 2 1 Subtilase family PKD PF00801.15 gi|294494797|ref|YP_003541290.1| - 5.1e-08 32.5 6.1 2.5e-07 30.3 4.2 2.3 1 0 0 1 1 1 1 PKD domain HATPase_c PF02518.21 gi|294494798|ref|YP_003541291.1| - 5.9e-34 116.1 0.0 1.3e-33 114.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|294494798|ref|YP_003541291.1| - 4.1e-26 90.9 0.9 1.3e-25 89.3 0.6 1.9 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|294494798|ref|YP_003541291.1| - 1.4e-18 66.6 0.1 3e-18 65.5 0.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|294494798|ref|YP_003541291.1| - 1.4e-11 44.6 0.4 0.00025 21.3 0.0 3.4 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|294494798|ref|YP_003541291.1| - 5.1e-05 23.0 0.0 0.036 13.8 0.0 3.3 3 0 0 3 3 3 1 PAS fold HATPase_c_3 PF13589.1 gi|294494798|ref|YP_003541291.1| - 0.00012 21.7 0.0 0.00027 20.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|294494798|ref|YP_003541291.1| - 0.00022 21.2 0.1 0.73 9.8 0.0 3.5 3 1 0 3 3 3 1 PAS fold PAS_8 PF13188.1 gi|294494798|ref|YP_003541291.1| - 0.00024 20.8 0.0 0.0045 16.7 0.0 2.7 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.1 gi|294494798|ref|YP_003541291.1| - 0.00032 20.3 0.0 0.00084 19.0 0.0 1.8 1 0 0 1 1 1 1 GHKL domain PAS_11 PF14598.1 gi|294494798|ref|YP_003541291.1| - 0.00093 19.1 0.1 0.0027 17.6 0.0 1.8 2 0 0 2 2 1 1 PAS domain HATPase_c_2 PF13581.1 gi|294494798|ref|YP_003541291.1| - 0.019 14.7 0.0 0.048 13.4 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|294494798|ref|YP_003541291.1| - 0.11 12.4 0.3 57 3.7 0.0 3.7 4 0 0 4 4 4 0 PAS fold Pigment_DH PF06324.6 gi|294494798|ref|YP_003541291.1| - 0.14 11.4 2.5 0.12 11.6 0.3 2.0 2 0 0 2 2 2 0 Pigment-dispersing hormone (PDH) D5_N PF08706.6 gi|294494798|ref|YP_003541291.1| - 0.14 12.1 1.9 0.25 11.3 0.1 2.4 2 0 0 2 2 2 0 D5 N terminal like PAS_9 PF13426.1 gi|294494799|ref|YP_003541292.1| - 7.1e-24 84.1 0.1 3e-20 72.5 0.0 2.5 2 1 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|294494799|ref|YP_003541292.1| - 3.2e-20 72.2 0.1 2.7e-14 53.1 0.0 3.0 2 1 0 2 2 2 2 PAS fold PAS PF00989.19 gi|294494799|ref|YP_003541292.1| - 4.5e-16 58.6 0.1 8.8e-15 54.4 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_3 PF08447.6 gi|294494799|ref|YP_003541292.1| - 6.9e-08 32.4 0.0 1.5e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_10 PF13596.1 gi|294494799|ref|YP_003541292.1| - 5.2e-06 26.6 0.0 5.3e-05 23.4 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.1 gi|294494799|ref|YP_003541292.1| - 0.00016 21.4 0.0 0.00061 19.5 0.0 2.0 2 0 0 2 2 2 1 PAS domain Methyltransf_4 PF02390.12 gi|294494799|ref|YP_003541292.1| - 0.087 11.8 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Peptidase_C1 PF00112.18 gi|294494800|ref|YP_003541293.1| - 3.9e-25 89.0 0.0 7.7e-25 88.0 0.0 1.5 1 0 0 1 1 1 1 Papain family cysteine protease fn3 PF00041.16 gi|294494800|ref|YP_003541293.1| - 2.9e-06 27.3 7.1 4.4e-05 23.5 0.2 3.2 2 0 0 2 2 2 2 Fibronectin type III domain Epimerase PF01370.16 gi|294494801|ref|YP_003541294.1| - 8.5e-57 192.2 0.0 1e-56 192.0 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|294494801|ref|YP_003541294.1| - 2.2e-20 72.7 0.0 2.8e-20 72.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|294494801|ref|YP_003541294.1| - 8.2e-20 70.6 0.0 1.1e-19 70.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|294494801|ref|YP_003541294.1| - 1.1e-18 67.1 0.0 9.2e-18 64.0 0.0 2.0 1 1 1 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|294494801|ref|YP_003541294.1| - 1.3e-16 60.3 0.0 3.2e-15 55.7 0.0 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|294494801|ref|YP_003541294.1| - 1.3e-09 38.3 0.0 1.9e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|294494801|ref|YP_003541294.1| - 7.9e-08 32.3 0.1 4e-07 30.1 0.0 2.0 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|294494801|ref|YP_003541294.1| - 7.4e-05 22.4 0.1 0.0069 16.0 0.1 2.4 1 1 0 1 1 1 1 KR domain NmrA PF05368.8 gi|294494801|ref|YP_003541294.1| - 0.0002 20.6 0.0 0.0016 17.7 0.0 2.2 1 1 0 1 1 1 1 NmrA-like family TrkA_N PF02254.13 gi|294494801|ref|YP_003541294.1| - 0.0012 18.8 0.0 0.002 18.0 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain Epimerase_Csub PF13950.1 gi|294494801|ref|YP_003541294.1| - 0.0042 16.9 0.0 0.0073 16.2 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit DUF1616 PF07760.6 gi|294494802|ref|YP_003541295.1| - 1e-110 369.4 5.5 1.1e-110 369.2 3.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) UPF0104 PF03706.8 gi|294494802|ref|YP_003541295.1| - 0.0048 16.2 0.8 0.0048 16.2 0.6 2.0 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0104) DUF4064 PF13273.1 gi|294494802|ref|YP_003541295.1| - 0.0085 16.1 0.5 0.0085 16.1 0.3 2.1 3 1 0 3 3 3 1 Protein of unknown function (DUF4064) MFS_1 PF07690.11 gi|294494802|ref|YP_003541295.1| - 0.012 14.3 10.5 0.026 13.2 7.3 1.5 1 1 0 1 1 1 0 Major Facilitator Superfamily DUF1673 PF07895.6 gi|294494802|ref|YP_003541295.1| - 0.11 11.9 1.8 0.17 11.4 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1673) Abi PF02517.11 gi|294494803|ref|YP_003541296.1| - 2.5e-17 62.7 9.8 2.5e-17 62.7 6.8 3.0 2 1 0 2 2 2 1 CAAX protease self-immunity DUF212 PF02681.9 gi|294494804|ref|YP_003541297.1| - 0.011 15.4 0.7 0.016 14.9 0.1 1.5 1 1 0 1 1 1 0 Divergent PAP2 family DUF2069 PF09842.4 gi|294494804|ref|YP_003541297.1| - 0.049 13.5 1.2 0.07 13.0 0.8 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2069) DUF996 PF06195.8 gi|294494804|ref|YP_003541297.1| - 0.074 13.0 3.6 0.11 12.4 2.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF996) ATP1G1_PLM_MAT8 PF02038.11 gi|294494804|ref|YP_003541297.1| - 0.093 11.7 0.3 0.19 10.7 0.2 1.6 1 0 0 1 1 1 0 ATP1G1/PLM/MAT8 family Na_Ca_ex PF01699.19 gi|294494804|ref|YP_003541297.1| - 0.12 11.9 5.5 0.15 11.6 3.8 1.0 1 0 0 1 1 1 0 Sodium/calcium exchanger protein NfeD PF01957.13 gi|294494804|ref|YP_003541297.1| - 0.19 11.8 3.9 0.23 11.6 2.7 1.2 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding Tetraspannin PF00335.15 gi|294494804|ref|YP_003541297.1| - 0.54 9.4 3.0 0.64 9.2 2.1 1.2 1 1 0 1 1 1 0 Tetraspanin family DUF2892 PF11127.3 gi|294494804|ref|YP_003541297.1| - 4 7.3 7.1 3.4 7.5 2.0 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF2892) DUF212 PF02681.9 gi|294494805|ref|YP_003541298.1| - 0.013 15.2 0.7 0.019 14.7 0.1 1.5 1 1 0 1 1 1 0 Divergent PAP2 family DUF996 PF06195.8 gi|294494805|ref|YP_003541298.1| - 0.027 14.4 3.4 0.04 13.9 2.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF996) DUF2069 PF09842.4 gi|294494805|ref|YP_003541298.1| - 0.035 14.0 1.0 0.05 13.5 0.7 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2069) ATP1G1_PLM_MAT8 PF02038.11 gi|294494805|ref|YP_003541298.1| - 0.078 12.0 0.1 0.16 11.0 0.1 1.6 1 0 0 1 1 1 0 ATP1G1/PLM/MAT8 family NfeD PF01957.13 gi|294494805|ref|YP_003541298.1| - 0.22 11.6 4.0 0.27 11.3 2.7 1.2 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding Na_Ca_ex PF01699.19 gi|294494805|ref|YP_003541298.1| - 0.22 11.0 5.3 0.28 10.7 3.7 1.0 1 0 0 1 1 1 0 Sodium/calcium exchanger protein Tetraspannin PF00335.15 gi|294494805|ref|YP_003541298.1| - 0.54 9.4 2.9 0.64 9.2 2.0 1.2 1 1 0 1 1 1 0 Tetraspanin family DUF2892 PF11127.3 gi|294494805|ref|YP_003541298.1| - 3.5 7.5 6.9 3.4 7.5 2.0 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF2892) PKD PF00801.15 gi|294494806|ref|YP_003541299.1| - 2.7e-16 59.0 2.7 8.5e-16 57.4 1.9 1.8 1 0 0 1 1 1 1 PKD domain DUF3244 PF11589.3 gi|294494806|ref|YP_003541299.1| - 0.085 12.5 1.9 1.2 8.8 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF3244) Y_Y_Y PF07495.8 gi|294494807|ref|YP_003541300.1| - 0.00071 19.2 0.2 0.1 12.4 0.0 3.7 2 1 1 3 3 3 1 Y_Y_Y domain FlgD_ig PF13860.1 gi|294494807|ref|YP_003541300.1| - 0.071 12.8 7.0 0.23 11.2 1.9 3.2 1 1 1 2 2 2 0 FlgD Ig-like domain DUF4140 PF13600.1 gi|294494807|ref|YP_003541300.1| - 0.076 13.4 0.0 0.27 11.7 0.0 2.0 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DUF2638 PF10937.3 gi|294494807|ref|YP_003541300.1| - 0.48 11.4 2.3 2.7 9.0 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2638) NTP_transferase PF00483.18 gi|294494808|ref|YP_003541301.1| - 2.7e-29 102.2 0.0 3.6e-29 101.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|294494808|ref|YP_003541301.1| - 5e-08 33.1 0.0 8.2e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.21 gi|294494808|ref|YP_003541301.1| - 3.3e-07 30.1 0.0 5.6e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 CTP_transf_3 PF02348.14 gi|294494808|ref|YP_003541301.1| - 0.057 13.0 0.0 0.095 12.3 0.0 1.4 1 1 0 1 1 1 0 Cytidylyltransferase IspD PF01128.14 gi|294494808|ref|YP_003541301.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF1049 PF06305.6 gi|294494809|ref|YP_003541302.1| - 2.1 7.9 8.5 4.3 6.9 0.5 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) PufQ PF05398.6 gi|294494809|ref|YP_003541302.1| - 3.7 7.6 5.9 1.6 8.8 0.2 2.9 2 1 1 3 3 3 0 PufQ cytochrome subunit Glycos_transf_2 PF00535.21 gi|294494810|ref|YP_003541303.1| - 2.8e-25 88.9 0.1 3.8e-25 88.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|294494810|ref|YP_003541303.1| - 4.9e-22 78.8 0.0 6.9e-22 78.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|294494810|ref|YP_003541303.1| - 1.7e-14 54.0 3.5 1.1e-13 51.2 2.4 2.1 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|294494810|ref|YP_003541303.1| - 1.2e-07 31.1 0.0 1.6e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|294494810|ref|YP_003541303.1| - 1.8e-06 27.3 0.0 3e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.10 gi|294494810|ref|YP_003541303.1| - 5.8e-05 21.6 0.0 5.8e-05 21.6 0.0 2.7 3 0 0 3 3 3 1 Chitin synthase Glyco_tranf_2_4 PF13704.1 gi|294494810|ref|YP_003541303.1| - 0.16 12.3 0.2 0.3 11.4 0.0 1.6 2 0 0 2 2 2 0 Glycosyl transferase family 2 MSP PF01716.13 gi|294494811|ref|YP_003541304.1| - 0.012 14.6 0.3 0.18 10.8 0.2 2.1 2 0 0 2 2 2 0 Manganese-stabilising protein / photosystem II polypeptide 7tm_7 PF08395.7 gi|294494811|ref|YP_003541304.1| - 4.6 6.1 15.7 0.63 8.9 0.4 3.1 3 0 0 3 3 3 0 7tm Chemosensory receptor NfeD PF01957.13 gi|294494811|ref|YP_003541304.1| - 8.6 6.4 11.7 12 6.0 1.5 3.5 2 1 0 3 3 3 0 NfeD-like C-terminal, partner-binding NTP_transf_2 PF01909.18 gi|294494812|ref|YP_003541305.1| - 1.7e-15 57.1 0.0 2.1e-15 56.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|294494812|ref|YP_003541305.1| - 0.0092 15.6 0.0 0.01 15.4 0.0 1.1 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 DNA_pol_B_palm PF14792.1 gi|294494812|ref|YP_003541305.1| - 0.012 15.6 0.0 0.014 15.4 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm Adenyl_cycl_N PF12633.2 gi|294494812|ref|YP_003541305.1| - 0.055 12.9 0.0 0.055 12.9 0.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase NT domain MdcG PF10620.4 gi|294494812|ref|YP_003541305.1| - 0.1 12.1 0.0 0.13 11.8 0.0 1.3 1 1 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG DUF2196 PF09962.4 gi|294494813|ref|YP_003541306.1| - 1.7e-30 104.5 5.1 1.9e-30 104.4 3.5 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) Mis14 PF08641.7 gi|294494814|ref|YP_003541307.1| - 0.0068 16.4 0.0 0.0074 16.3 0.0 1.1 1 0 0 1 1 1 1 Kinetochore protein Mis14 like VAR1 PF05316.7 gi|294494814|ref|YP_003541307.1| - 0.01 14.4 3.3 0.012 14.2 2.3 1.0 1 0 0 1 1 1 0 Mitochondrial ribosomal protein (VAR1) TBPIP PF07106.8 gi|294494814|ref|YP_003541307.1| - 0.019 14.5 0.2 0.028 13.9 0.2 1.4 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF2184 PF09950.4 gi|294494814|ref|YP_003541307.1| - 0.065 12.2 0.6 0.071 12.1 0.4 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2184) dsDNA_bind PF01984.15 gi|294494814|ref|YP_003541307.1| - 0.11 12.4 0.2 0.14 12.1 0.2 1.1 1 0 0 1 1 1 0 Double-stranded DNA-binding domain Aconitase_C PF00694.14 gi|294494815|ref|YP_003541308.1| - 5.2e-20 71.8 0.0 8.7e-20 71.1 0.0 1.5 1 1 0 1 1 1 1 Aconitase C-terminal domain Iso_dh PF00180.15 gi|294494817|ref|YP_003541310.1| - 1.1e-93 313.9 0.0 1.4e-93 313.6 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase AA_kinase PF00696.23 gi|294494818|ref|YP_003541311.1| - 3e-30 105.5 0.8 3.6e-30 105.2 0.5 1.1 1 0 0 1 1 1 1 Amino acid kinase family SKI PF01202.17 gi|294494818|ref|YP_003541311.1| - 0.0071 16.2 0.8 0.019 14.8 0.0 2.1 2 1 1 3 3 3 1 Shikimate kinase AlaDh_PNT_C PF01262.16 gi|294494818|ref|YP_003541311.1| - 0.012 15.2 0.1 0.031 13.8 0.1 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain HAD PF12710.2 gi|294494818|ref|YP_003541311.1| - 0.022 14.9 0.0 0.028 14.6 0.0 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Fer4 PF00037.22 gi|294494819|ref|YP_003541312.1| - 1.3e-18 65.7 21.8 2.5e-09 36.3 5.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|294494819|ref|YP_003541312.1| - 1.5e-14 53.9 26.7 4.4e-11 42.8 10.5 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294494819|ref|YP_003541312.1| - 2e-13 50.4 15.0 2.5e-13 50.1 10.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294494819|ref|YP_003541312.1| - 1.2e-12 47.4 12.0 1.5e-12 47.1 8.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294494819|ref|YP_003541312.1| - 7e-12 45.0 14.7 9.3e-12 44.6 10.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294494819|ref|YP_003541312.1| - 8e-12 44.4 21.0 5.5e-06 26.0 5.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|294494819|ref|YP_003541312.1| - 1.1e-11 43.8 18.9 2.8e-06 26.9 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|294494819|ref|YP_003541312.1| - 2.7e-11 44.0 11.6 9.6e-06 26.2 1.2 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|294494819|ref|YP_003541312.1| - 4.2e-10 39.1 14.5 6.1e-05 23.0 3.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|294494819|ref|YP_003541312.1| - 3.3e-08 33.7 21.3 0.0015 18.8 1.0 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294494819|ref|YP_003541312.1| - 1.3e-07 31.4 13.6 1.1e-06 28.5 9.4 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|294494819|ref|YP_003541312.1| - 2e-06 27.9 22.3 0.0027 18.1 4.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|294494819|ref|YP_003541312.1| - 4.1e-06 27.1 19.0 0.0023 18.2 4.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|294494819|ref|YP_003541312.1| - 6.8e-06 26.5 18.5 4.5e-05 23.9 2.8 2.4 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|294494819|ref|YP_003541312.1| - 0.00011 22.5 19.9 0.026 14.9 3.3 2.5 1 1 2 3 3 3 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|294494819|ref|YP_003541312.1| - 0.00036 20.3 7.2 0.00041 20.1 5.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain DUF1628 PF07790.6 gi|294494820|ref|YP_003541313.1| - 7.2e-14 52.2 0.4 1.3e-13 51.4 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) Helicase_C_2 PF13307.1 gi|294494821|ref|YP_003541314.1| - 1.2e-25 90.3 0.0 3.4e-25 88.9 0.0 1.8 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|294494821|ref|YP_003541314.1| - 1.2e-20 73.6 3.1 8e-20 70.9 2.1 2.0 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|294494821|ref|YP_003541314.1| - 5.9e-05 22.6 0.1 0.0044 16.5 0.0 3.0 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|294494821|ref|YP_003541314.1| - 0.00016 21.5 3.3 0.0037 17.1 2.3 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit KaiC PF06745.8 gi|294494821|ref|YP_003541314.1| - 0.0028 16.8 0.2 0.0061 15.7 0.1 1.5 1 0 0 1 1 1 1 KaiC PhoH PF02562.11 gi|294494821|ref|YP_003541314.1| - 0.012 14.8 0.1 0.038 13.2 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein AAA_34 PF13872.1 gi|294494821|ref|YP_003541314.1| - 0.045 12.5 0.0 0.11 11.2 0.0 1.5 1 1 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 Zot PF05707.7 gi|294494821|ref|YP_003541314.1| - 0.085 12.3 0.1 1.6 8.1 0.0 2.3 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) HYLS1_C PF15311.1 gi|294494821|ref|YP_003541314.1| - 0.095 12.9 0.1 0.23 11.6 0.1 1.6 1 0 0 1 1 1 0 Hydrolethalus syndrome protein 1 C-terminus GHMP_kinases_N PF00288.21 gi|294494822|ref|YP_003541315.1| - 2.9e-10 40.0 0.2 5.5e-10 39.1 0.2 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|294494822|ref|YP_003541315.1| - 7e-09 35.7 0.0 1.5e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal Nop PF01798.13 gi|294494823|ref|YP_003541316.1| - 1.3e-47 160.8 0.7 1.9e-47 160.3 0.5 1.2 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|294494823|ref|YP_003541316.1| - 1.4e-09 37.6 0.0 2.6e-09 36.7 0.0 1.5 1 0 0 1 1 1 1 NOSIC (NUC001) domain Fibrillarin PF01269.12 gi|294494824|ref|YP_003541317.1| - 1e-85 286.3 0.0 1.1e-85 286.1 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Methyltransf_18 PF12847.2 gi|294494824|ref|YP_003541317.1| - 0.011 16.3 0.0 0.018 15.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|294494824|ref|YP_003541317.1| - 0.031 14.7 0.0 0.088 13.3 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|294494824|ref|YP_003541317.1| - 0.032 13.9 0.0 0.12 12.0 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|294494824|ref|YP_003541317.1| - 0.041 13.4 0.0 0.089 12.3 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain DREV PF05219.7 gi|294494824|ref|YP_003541317.1| - 0.062 12.1 0.0 0.089 11.6 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase DUF2769 PF10967.3 gi|294494825|ref|YP_003541318.1| - 5.6e-13 48.9 14.3 7.2e-13 48.6 8.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2769) Cys_rich_CWC PF14375.1 gi|294494825|ref|YP_003541318.1| - 0.024 14.5 5.7 0.57 10.1 0.4 2.2 2 0 0 2 2 2 0 Cysteine-rich CWC Toxin_3 PF00537.13 gi|294494825|ref|YP_003541318.1| - 0.75 9.7 9.2 0.16 11.8 1.2 2.3 2 0 0 2 2 2 0 Scorpion toxin-like domain zf-Paramyx-P PF13008.2 gi|294494825|ref|YP_003541318.1| - 4.1 6.6 11.3 1.7 7.8 1.9 2.4 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein Viral_Beta_CD PF04530.7 gi|294494825|ref|YP_003541318.1| - 4.8 7.3 6.7 10 6.3 0.2 2.1 2 0 0 2 2 2 0 Viral Beta C/D like family Rhodanese PF00581.15 gi|294494826|ref|YP_003541319.1| - 1.7e-18 66.9 0.1 2.9e-18 66.2 0.0 1.4 2 0 0 2 2 2 1 Rhodanese-like domain DUF3153 PF11353.3 gi|294494826|ref|YP_003541319.1| - 0.063 12.7 0.1 0.078 12.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3153) DUF442 PF04273.8 gi|294494826|ref|YP_003541319.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Putative phosphatase (DUF442) NosD PF05048.8 gi|294494827|ref|YP_003541320.1| - 7.8e-59 198.6 100.8 7.9e-42 143.0 31.4 4.0 2 1 2 4 4 4 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|294494827|ref|YP_003541320.1| - 2.7e-24 85.6 85.8 6.4e-14 51.9 25.2 3.3 2 1 1 3 3 3 2 Right handed beta helix region DUF1565 PF07602.6 gi|294494827|ref|YP_003541320.1| - 8.3e-07 28.3 64.6 0.31 10.1 15.2 5.1 2 1 1 3 3 3 2 Protein of unknown function (DUF1565) DUF4625 PF15418.1 gi|294494827|ref|YP_003541320.1| - 0.005 16.9 0.1 0.66 10.1 0.1 2.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4625) Big_3_4 PF13754.1 gi|294494827|ref|YP_003541320.1| - 0.0056 16.9 0.7 0.0056 16.9 0.5 3.6 3 2 1 4 4 4 1 Bacterial Ig-like domain (group 3) Pectate_lyase_3 PF12708.2 gi|294494827|ref|YP_003541320.1| - 4.1 7.4 54.8 0.069 13.2 18.8 3.1 1 1 2 3 3 3 0 Pectate lyase superfamily protein Methyltransf_18 PF12847.2 gi|294494828|ref|YP_003541321.1| - 8.2e-15 55.3 0.0 1.4e-14 54.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|294494828|ref|YP_003541321.1| - 1.8e-11 43.8 0.0 3.4e-11 42.9 0.0 1.6 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|294494828|ref|YP_003541321.1| - 1.3e-10 41.6 0.0 2.4e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|294494828|ref|YP_003541321.1| - 7e-10 38.8 0.0 1.3e-09 37.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|294494828|ref|YP_003541321.1| - 1.3e-09 38.3 0.0 2.4e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|294494828|ref|YP_003541321.1| - 2.9e-07 29.8 0.0 5.6e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_25 PF13649.1 gi|294494828|ref|YP_003541321.1| - 8.2e-07 29.3 0.0 1.8e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|294494828|ref|YP_003541321.1| - 9.5e-07 28.0 0.0 1.4e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|294494828|ref|YP_003541321.1| - 1.6e-06 27.6 0.0 2.5e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|294494828|ref|YP_003541321.1| - 6.7e-06 26.1 0.0 1e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|294494828|ref|YP_003541321.1| - 8.3e-06 25.3 0.0 1.3e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase tRNA_U5-meth_tr PF05958.6 gi|294494828|ref|YP_003541321.1| - 1.9e-05 23.5 0.0 2.8e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Ubie_methyltran PF01209.13 gi|294494828|ref|YP_003541321.1| - 2.5e-05 23.4 0.0 5e-05 22.5 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family DREV PF05219.7 gi|294494828|ref|YP_003541321.1| - 0.00035 19.5 0.0 0.0005 19.0 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Met_10 PF02475.11 gi|294494828|ref|YP_003541321.1| - 0.00042 19.9 0.0 0.00062 19.4 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein DUF938 PF06080.7 gi|294494828|ref|YP_003541321.1| - 0.00064 19.3 0.0 0.00097 18.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF938) TehB PF03848.9 gi|294494828|ref|YP_003541321.1| - 0.0018 17.4 0.0 0.0027 16.8 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Cons_hypoth95 PF03602.10 gi|294494828|ref|YP_003541321.1| - 0.0018 17.6 0.0 0.003 16.9 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_4 PF02390.12 gi|294494828|ref|YP_003541321.1| - 0.0019 17.3 0.0 0.0039 16.2 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.14 gi|294494828|ref|YP_003541321.1| - 0.0029 17.1 0.0 0.0048 16.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.5 gi|294494828|ref|YP_003541321.1| - 0.011 15.2 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase CMAS PF02353.15 gi|294494828|ref|YP_003541321.1| - 0.017 14.2 0.1 0.073 12.1 0.0 1.9 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|294494828|ref|YP_003541321.1| - 0.075 12.1 0.1 0.12 11.4 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.14 gi|294494828|ref|YP_003541321.1| - 0.084 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase AICARFT_IMPCHas PF01808.13 gi|294494829|ref|YP_003541322.1| - 1e-85 287.6 0.0 1.3e-85 287.2 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.17 gi|294494829|ref|YP_003541322.1| - 1.2e-27 95.7 0.0 2.2e-27 94.7 0.0 1.5 1 0 0 1 1 1 1 MGS-like domain Methyltransf_31 PF13847.1 gi|294494830|ref|YP_003541323.1| - 4.6e-18 65.2 0.0 5.3e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|294494830|ref|YP_003541323.1| - 1.4e-15 57.5 0.0 1.9e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|294494830|ref|YP_003541323.1| - 4.6e-14 52.9 0.0 6.6e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|294494830|ref|YP_003541323.1| - 8.2e-14 51.8 0.0 1.1e-13 51.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|294494830|ref|YP_003541323.1| - 5.7e-10 38.8 0.0 7.4e-10 38.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|294494830|ref|YP_003541323.1| - 2e-09 37.3 0.0 2.5e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|294494830|ref|YP_003541323.1| - 3.1e-09 36.2 0.0 4e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.8 gi|294494830|ref|YP_003541323.1| - 4.6e-09 35.8 0.1 6e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|294494830|ref|YP_003541323.1| - 1.3e-07 31.9 0.0 1.6e-07 31.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|294494830|ref|YP_003541323.1| - 1.1e-06 28.6 0.0 2.2e-06 27.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|294494830|ref|YP_003541323.1| - 4.4e-05 22.5 0.0 5.5e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_4 PF02390.12 gi|294494830|ref|YP_003541323.1| - 0.0002 20.5 0.2 0.00043 19.3 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_8 PF05148.10 gi|294494830|ref|YP_003541323.1| - 0.00025 20.7 0.0 0.0073 15.9 0.0 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.15 gi|294494830|ref|YP_003541323.1| - 0.0011 18.1 0.0 0.0014 17.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Met_10 PF02475.11 gi|294494830|ref|YP_003541323.1| - 0.0013 18.3 0.0 0.0015 18.1 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_32 PF13679.1 gi|294494830|ref|YP_003541323.1| - 0.0067 16.1 0.0 0.0095 15.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|294494830|ref|YP_003541323.1| - 0.011 14.4 0.0 0.016 13.9 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase TPMT PF05724.6 gi|294494830|ref|YP_003541323.1| - 0.021 14.2 0.0 0.029 13.8 0.0 1.3 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) MetW PF07021.7 gi|294494830|ref|YP_003541323.1| - 0.03 13.7 0.0 0.041 13.2 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW UPF0020 PF01170.13 gi|294494830|ref|YP_003541323.1| - 0.038 13.5 0.0 0.05 13.1 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.5 gi|294494830|ref|YP_003541323.1| - 0.07 12.6 0.0 0.097 12.2 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PCMT PF01135.14 gi|294494830|ref|YP_003541323.1| - 0.12 11.9 0.1 0.23 10.9 0.0 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF1947 PF09183.5 gi|294494830|ref|YP_003541323.1| - 0.18 11.6 0.7 0.33 10.7 0.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1947) tRNA-Thr_ED PF08915.6 gi|294494831|ref|YP_003541324.1| - 4e-39 133.7 3.7 4.5e-39 133.5 2.5 1.0 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase DUF4441 PF14536.1 gi|294494831|ref|YP_003541324.1| - 0.13 12.2 2.2 0.08 12.9 0.5 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4441) KaiC PF06745.8 gi|294494831|ref|YP_003541324.1| - 0.14 11.2 1.2 0.17 10.9 0.8 1.1 1 0 0 1 1 1 0 KaiC Nucleoporin_C PF03177.9 gi|294494831|ref|YP_003541324.1| - 0.15 10.5 1.5 0.17 10.3 1.0 1.1 1 0 0 1 1 1 0 Non-repetitive/WGA-negative nucleoporin C-terminal FadA PF09403.5 gi|294494831|ref|YP_003541324.1| - 0.4 10.6 0.1 0.4 10.6 0.1 2.3 1 1 1 2 2 2 0 Adhesion protein FadA Lumazine_bd PF12870.2 gi|294494831|ref|YP_003541324.1| - 1.4 8.9 6.9 1.1 9.3 3.7 1.6 1 1 1 2 2 2 0 Lumazine-binding domain TPP_enzyme_N PF02776.13 gi|294494832|ref|YP_003541325.1| - 1.3e-48 164.7 0.0 2.7e-48 163.6 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|294494832|ref|YP_003541325.1| - 2.8e-39 134.1 0.0 1e-37 129.0 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|294494832|ref|YP_003541325.1| - 1.4e-24 86.3 0.0 3.7e-24 85.0 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CCG PF02754.11 gi|294494833|ref|YP_003541326.1| - 9.9e-24 83.1 1.6 2.4e-14 53.1 0.0 2.7 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|294494833|ref|YP_003541326.1| - 7.7e-09 35.4 2.8 7.7e-09 35.4 1.9 2.3 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294494833|ref|YP_003541326.1| - 3e-07 31.0 4.2 3e-07 31.0 2.9 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|294494833|ref|YP_003541326.1| - 7.8e-07 29.3 13.7 2.6e-06 27.6 2.5 2.6 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294494833|ref|YP_003541326.1| - 7.9e-06 26.2 11.2 0.011 16.1 0.9 3.7 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294494833|ref|YP_003541326.1| - 1.1e-05 25.6 6.8 1.1e-05 25.6 4.7 2.9 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294494833|ref|YP_003541326.1| - 2.9e-05 23.7 8.4 2.9e-05 23.7 5.8 3.0 3 2 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294494833|ref|YP_003541326.1| - 3.5e-05 24.0 6.7 3.5e-05 24.0 4.7 2.7 3 1 0 3 3 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|294494833|ref|YP_003541326.1| - 0.00036 19.9 12.9 0.00057 19.3 2.1 3.9 6 0 0 6 6 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|294494833|ref|YP_003541326.1| - 0.00043 20.0 7.7 0.032 14.1 0.6 3.7 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294494833|ref|YP_003541326.1| - 0.0042 16.9 1.7 0.0042 16.9 1.2 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|294494833|ref|YP_003541326.1| - 0.0096 16.1 2.0 0.0096 16.1 1.4 4.4 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294494833|ref|YP_003541326.1| - 0.01 15.6 3.0 0.01 15.6 2.0 3.8 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|294494833|ref|YP_003541326.1| - 0.015 15.7 7.5 0.064 13.6 1.5 3.4 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|294494833|ref|YP_003541326.1| - 0.093 13.3 1.2 0.093 13.3 0.8 4.6 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|294494833|ref|YP_003541326.1| - 6.6 7.3 10.1 1.6e+02 2.9 5.3 3.6 3 1 1 4 4 4 0 4Fe-4S single cluster domain CGGC PF08821.6 gi|294494834|ref|YP_003541327.1| - 1.4e-33 115.1 1.5 1.5e-33 115.0 1.0 1.0 1 0 0 1 1 1 1 CGGC domain DUF2284 PF10050.4 gi|294494836|ref|YP_003541329.1| - 1e-47 161.8 0.1 1.4e-47 161.4 0.0 1.2 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) Dehalogenase PF13486.1 gi|294494836|ref|YP_003541329.1| - 0.061 12.7 0.1 4.9 6.5 0.0 2.1 2 0 0 2 2 2 0 Reductive dehalogenase subunit DUF4239 PF14023.1 gi|294494836|ref|YP_003541329.1| - 0.1 11.9 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4239) T4_deiodinase PF00837.12 gi|294494836|ref|YP_003541329.1| - 0.15 11.0 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 Iodothyronine deiodinase NfeD PF01957.13 gi|294494837|ref|YP_003541330.1| - 0.13 12.3 1.7 0.15 12.2 1.2 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF420 PF04238.7 gi|294494837|ref|YP_003541330.1| - 0.14 12.0 1.8 0.16 11.8 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF420) DUF2892 PF11127.3 gi|294494837|ref|YP_003541330.1| - 1.6 8.6 4.2 2.2 8.1 2.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) MMPL PF03176.10 gi|294494838|ref|YP_003541331.1| - 2.1e-48 164.7 7.0 2.7e-25 88.7 1.8 2.1 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|294494838|ref|YP_003541331.1| - 1.7e-14 53.5 11.7 2e-08 33.8 1.2 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.14 gi|294494838|ref|YP_003541331.1| - 7.2e-09 33.6 23.2 4e-05 21.2 3.9 2.7 2 2 0 2 2 2 2 AcrB/AcrD/AcrF family Patched PF02460.13 gi|294494838|ref|YP_003541331.1| - 9e-07 27.2 21.8 0.00027 19.0 7.8 2.1 2 0 0 2 2 2 2 Patched family SecD_SecF PF02355.11 gi|294494838|ref|YP_003541331.1| - 1.6e-06 27.4 6.0 1.6e-06 27.4 4.2 2.5 3 0 0 3 3 3 1 Protein export membrane protein NPCBM_assoc PF10633.4 gi|294494839|ref|YP_003541332.1| - 0.00022 21.2 0.0 0.53 10.3 0.0 3.2 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|294494839|ref|YP_003541332.1| - 0.0049 16.9 3.6 0.028 14.4 0.1 3.0 2 1 0 2 2 2 1 CARDB Wzt_C PF14524.1 gi|294494839|ref|YP_003541332.1| - 0.048 13.3 0.0 0.99 9.1 0.0 2.4 2 0 0 2 2 2 0 Wzt C-terminal domain DUF4366 PF14283.1 gi|294494840|ref|YP_003541333.1| - 0.049 13.0 0.0 0.086 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) DUF4469 PF14734.1 gi|294494840|ref|YP_003541333.1| - 0.06 13.2 0.3 1.4 8.7 0.0 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4469) with IG-like fold DUF318 PF03773.8 gi|294494841|ref|YP_003541334.1| - 1.5e-07 30.7 17.0 1.5e-07 30.7 11.8 1.7 1 1 0 1 1 1 1 Predicted permease DUF318 PF03773.8 gi|294494842|ref|YP_003541335.1| - 8e-12 44.7 5.0 1.1e-11 44.2 3.5 1.2 1 0 0 1 1 1 1 Predicted permease Pox_A14 PF05767.7 gi|294494842|ref|YP_003541335.1| - 0.0056 16.6 0.5 0.012 15.5 0.4 1.6 1 0 0 1 1 1 1 Poxvirus virion envelope protein A14 Torsin PF06309.6 gi|294494842|ref|YP_003541335.1| - 0.061 13.2 0.0 0.088 12.6 0.0 1.3 1 0 0 1 1 1 0 Torsin DUF1418 PF07214.7 gi|294494842|ref|YP_003541335.1| - 1.8 8.2 4.3 0.94 9.1 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1418) FtsX PF02687.16 gi|294494842|ref|YP_003541335.1| - 5.2 6.8 13.4 15 5.3 6.0 2.8 1 1 1 2 2 2 0 FtsX-like permease family Peripla_BP_2 PF01497.13 gi|294494843|ref|YP_003541336.1| - 4.3e-27 94.7 0.0 5.4e-27 94.4 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Methyltransf_11 PF08241.7 gi|294494844|ref|YP_003541337.1| - 3.9e-20 72.1 0.0 8.5e-20 71.0 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|294494844|ref|YP_003541337.1| - 1.7e-12 47.1 0.0 2.3e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|294494844|ref|YP_003541337.1| - 2.3e-12 46.5 0.0 2.8e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|294494844|ref|YP_003541337.1| - 2.4e-12 47.0 0.0 4.9e-12 46.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|294494844|ref|YP_003541337.1| - 4.4e-11 43.3 0.0 7.3e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|294494844|ref|YP_003541337.1| - 5.5e-09 36.4 0.0 1e-08 35.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|294494844|ref|YP_003541337.1| - 9.6e-08 31.9 0.0 1.6e-07 31.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|294494844|ref|YP_003541337.1| - 1.2e-07 31.5 0.0 1.6e-06 27.9 0.0 2.0 1 1 1 2 2 2 1 Hypothetical methyltransferase Methyltransf_26 PF13659.1 gi|294494844|ref|YP_003541337.1| - 4.8e-05 23.3 0.0 0.0002 21.3 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|294494844|ref|YP_003541337.1| - 0.00011 21.4 0.0 0.00022 20.4 0.0 1.7 1 1 1 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|294494844|ref|YP_003541337.1| - 0.0051 16.2 0.0 0.0071 15.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|294494844|ref|YP_003541337.1| - 0.012 14.7 0.0 0.016 14.2 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.5 gi|294494844|ref|YP_003541337.1| - 0.013 15.1 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PCMT PF01135.14 gi|294494844|ref|YP_003541337.1| - 0.013 15.0 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Met_10 PF02475.11 gi|294494844|ref|YP_003541337.1| - 0.015 14.9 0.0 0.03 13.9 0.0 1.5 2 0 0 2 2 2 0 Met-10+ like-protein Methyltransf_3 PF01596.12 gi|294494844|ref|YP_003541337.1| - 0.047 12.7 0.0 0.067 12.2 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase UPF0020 PF01170.13 gi|294494844|ref|YP_003541337.1| - 0.065 12.8 0.0 0.15 11.6 0.0 1.6 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_5 PF01795.14 gi|294494844|ref|YP_003541337.1| - 0.1 11.8 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 MraW methylase family Fibrillarin PF01269.12 gi|294494844|ref|YP_003541337.1| - 0.11 11.4 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin DOT1 PF08123.8 gi|294494844|ref|YP_003541337.1| - 0.13 11.5 0.0 0.63 9.3 0.0 1.9 2 0 0 2 2 2 0 Histone methylation protein DOT1 GCD14 PF08704.5 gi|294494844|ref|YP_003541337.1| - 0.16 11.4 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Peripla_BP_2 PF01497.13 gi|294494845|ref|YP_003541338.1| - 5.1e-07 29.0 0.0 8e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Radical_SAM PF04055.16 gi|294494845|ref|YP_003541338.1| - 5.7e-06 26.6 0.9 1.3e-05 25.3 0.3 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|294494845|ref|YP_003541338.1| - 0.00065 19.8 1.8 0.0018 18.3 1.3 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|294494845|ref|YP_003541338.1| - 0.016 15.2 1.3 0.055 13.5 0.9 1.9 1 0 0 1 1 1 0 4Fe-4S single cluster domain FecCD PF01032.13 gi|294494846|ref|YP_003541339.1| - 7.2e-91 304.2 33.9 8.8e-91 303.9 23.5 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|294494846|ref|YP_003541339.1| - 0.00017 20.9 18.9 0.00017 20.9 13.1 1.6 2 0 0 2 2 2 1 ABC 3 transport family ABC_tran PF00005.22 gi|294494847|ref|YP_003541340.1| - 4.4e-32 111.2 0.0 6.3e-32 110.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|294494847|ref|YP_003541340.1| - 4.9e-16 59.5 1.8 1.4e-09 38.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|294494847|ref|YP_003541340.1| - 4.7e-08 32.4 0.1 0.00029 20.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|294494847|ref|YP_003541340.1| - 8.4e-08 31.7 0.1 8.7e-06 25.1 0.0 2.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|294494847|ref|YP_003541340.1| - 6e-05 22.2 0.1 9.5e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|294494847|ref|YP_003541340.1| - 0.00051 20.0 0.2 0.0018 18.2 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|294494847|ref|YP_003541340.1| - 0.00099 19.4 0.3 0.0016 18.8 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|294494847|ref|YP_003541340.1| - 0.0018 17.8 0.1 0.091 12.1 0.1 2.1 1 1 0 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|294494847|ref|YP_003541340.1| - 0.0024 17.3 0.1 0.0043 16.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|294494847|ref|YP_003541340.1| - 0.0031 17.7 0.0 0.032 14.4 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|294494847|ref|YP_003541340.1| - 0.0036 17.4 0.0 0.22 11.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|294494847|ref|YP_003541340.1| - 0.0057 16.5 0.0 0.046 13.6 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.1 gi|294494847|ref|YP_003541340.1| - 0.0077 15.8 0.1 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|294494847|ref|YP_003541340.1| - 0.008 15.6 0.0 0.028 13.8 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein NACHT PF05729.7 gi|294494847|ref|YP_003541340.1| - 0.019 14.6 0.4 0.035 13.7 0.1 1.6 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.1 gi|294494847|ref|YP_003541340.1| - 0.031 13.6 0.0 0.061 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|294494847|ref|YP_003541340.1| - 0.032 12.8 0.1 5.8 5.3 0.0 2.4 3 0 0 3 3 3 0 Predicted ATPase of the ABC class Mg_chelatase PF01078.16 gi|294494847|ref|YP_003541340.1| - 0.046 12.8 0.0 0.071 12.2 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.1 gi|294494847|ref|YP_003541340.1| - 0.051 13.4 0.0 0.3 10.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|294494847|ref|YP_003541340.1| - 0.062 12.9 0.0 0.077 12.6 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase ATP-synt_ab PF00006.20 gi|294494847|ref|YP_003541340.1| - 0.086 12.3 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.9 gi|294494847|ref|YP_003541340.1| - 0.09 12.5 0.0 0.66 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_13 PF13166.1 gi|294494847|ref|YP_003541340.1| - 0.16 10.4 0.1 5.9 5.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain PAPS_reduct PF01507.14 gi|294494848|ref|YP_003541341.1| - 2e-41 141.6 0.0 3.3e-41 141.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.15 gi|294494848|ref|YP_003541341.1| - 1.4e-20 72.8 1.1 4.2e-19 68.0 0.1 2.5 2 0 0 2 2 2 1 PUA domain Fer4 PF00037.22 gi|294494848|ref|YP_003541341.1| - 2.2e-09 36.4 19.3 9.9e-05 21.7 3.4 3.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294494848|ref|YP_003541341.1| - 3.3e-08 33.7 12.8 3.3e-08 33.7 8.9 2.5 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294494848|ref|YP_003541341.1| - 2.5e-07 30.8 13.0 2.5e-07 30.8 9.0 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|294494848|ref|YP_003541341.1| - 3.1e-06 27.4 5.8 0.027 14.8 0.1 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294494848|ref|YP_003541341.1| - 4.1e-06 26.4 10.9 4.1e-06 26.4 7.5 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294494848|ref|YP_003541341.1| - 3.9e-05 23.4 13.0 3.9e-05 23.4 9.0 2.8 3 1 0 3 3 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294494848|ref|YP_003541341.1| - 9.5e-05 22.0 3.9 9.5e-05 22.0 2.7 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|294494848|ref|YP_003541341.1| - 0.00052 19.9 11.6 0.00052 19.9 8.0 3.0 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294494848|ref|YP_003541341.1| - 0.00068 19.4 3.3 0.00068 19.4 2.3 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|294494848|ref|YP_003541341.1| - 0.0038 17.9 19.2 0.019 15.6 1.3 3.6 2 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|294494848|ref|YP_003541341.1| - 0.012 15.9 4.3 0.012 15.9 3.0 3.5 3 1 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|294494848|ref|YP_003541341.1| - 0.024 15.0 15.0 0.96 9.9 1.5 3.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Cas_Cas4 PF01930.12 gi|294494849|ref|YP_003541342.1| - 1.4e-12 47.8 2.4 6.5e-11 42.4 0.1 2.6 2 1 0 2 2 2 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|294494849|ref|YP_003541342.1| - 1.2e-06 28.0 2.2 6.4e-06 25.7 1.5 2.2 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF1631 PF07793.6 gi|294494849|ref|YP_003541342.1| - 0.055 11.6 0.2 0.079 11.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) DUF3375 PF11855.3 gi|294494849|ref|YP_003541342.1| - 0.077 11.7 0.6 0.11 11.1 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3375) HTH_3 PF01381.17 gi|294494850|ref|YP_003541343.1| - 8.9e-08 31.8 0.0 3e-07 30.1 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|294494850|ref|YP_003541343.1| - 1.7e-06 27.9 0.0 7.1e-06 25.9 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|294494850|ref|YP_003541343.1| - 0.034 14.3 0.0 0.11 12.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain ACP_syn_III_C PF08541.5 gi|294494851|ref|YP_003541344.1| - 7.1e-12 45.1 0.0 1.9e-11 43.8 0.0 1.8 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|294494851|ref|YP_003541344.1| - 2e-06 27.5 0.0 4.4e-05 23.1 0.0 2.3 2 1 1 3 3 3 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.5 gi|294494851|ref|YP_003541344.1| - 0.0026 17.3 1.4 0.0026 17.3 1.0 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_N PF01154.12 gi|294494851|ref|YP_003541344.1| - 0.0029 17.2 0.1 0.004 16.7 0.1 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_N PF00108.18 gi|294494852|ref|YP_003541345.1| - 3.6e-13 49.0 3.1 6.2e-12 45.0 1.2 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|294494852|ref|YP_003541345.1| - 5.1e-13 48.5 3.4 5.9e-12 45.0 0.1 2.6 1 1 1 2 2 2 2 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|294494852|ref|YP_003541345.1| - 1.3e-06 28.1 9.0 2.4e-06 27.2 4.8 2.4 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|294494852|ref|YP_003541345.1| - 0.028 14.2 0.5 0.45 10.3 0.0 2.8 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain DUF35 PF01796.12 gi|294494853|ref|YP_003541346.1| - 2e-19 69.5 0.0 2.6e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|294494853|ref|YP_003541346.1| - 8.8e-09 35.0 2.1 1.3e-08 34.4 1.4 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C3HC4_3 PF13920.1 gi|294494853|ref|YP_003541346.1| - 0.014 15.0 1.4 0.019 14.6 0.9 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) FdhE PF04216.7 gi|294494853|ref|YP_003541346.1| - 0.15 11.7 0.4 0.18 11.5 0.3 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation CYTH PF01928.16 gi|294494854|ref|YP_003541347.1| - 5.3e-36 124.0 4.6 5.8e-36 123.9 3.2 1.0 1 0 0 1 1 1 1 CYTH domain Glt_symporter PF03616.9 gi|294494855|ref|YP_003541348.1| - 1.7e-12 46.5 18.6 3e-11 42.4 12.9 2.2 1 1 0 1 1 1 1 Sodium/glutamate symporter tRNA-synt_1g PF09334.6 gi|294494856|ref|YP_003541349.1| - 4.5e-143 476.6 0.0 6.1e-143 476.1 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|294494856|ref|YP_003541349.1| - 9.1e-27 92.7 0.7 1.8e-26 91.7 0.5 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|294494856|ref|YP_003541349.1| - 1.7e-20 72.5 0.4 2e-09 36.0 0.1 4.2 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|294494856|ref|YP_003541349.1| - 7.9e-15 54.7 0.1 3.7e-10 39.4 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|294494856|ref|YP_003541349.1| - 2.4e-12 46.8 0.5 4e-12 46.1 0.3 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1d PF00750.14 gi|294494856|ref|YP_003541349.1| - 0.00027 19.8 0.6 0.25 10.1 0.0 3.0 2 1 1 3 3 3 2 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|294494856|ref|YP_003541349.1| - 0.0003 19.5 0.1 0.019 13.6 0.0 2.6 2 0 0 2 2 2 1 tRNA synthetases class I (K) NinF PF05810.7 gi|294494856|ref|YP_003541349.1| - 0.5 10.1 4.6 12 5.7 0.2 2.5 1 1 1 2 2 2 0 NinF protein Peptidase_S49 PF01343.13 gi|294494857|ref|YP_003541350.1| - 4.2e-42 143.5 0.8 6.1e-42 143.0 0.6 1.2 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|294494857|ref|YP_003541350.1| - 0.033 13.8 2.1 0.17 11.5 0.4 2.1 2 0 0 2 2 2 0 Clp protease Asparaginase PF00710.15 gi|294494857|ref|YP_003541350.1| - 0.034 13.0 0.3 0.054 12.3 0.2 1.2 1 0 0 1 1 1 0 Asparaginase ECH PF00378.15 gi|294494857|ref|YP_003541350.1| - 0.22 10.5 0.9 5.6 6.0 0.3 2.5 2 1 0 2 2 2 0 Enoyl-CoA hydratase/isomerase family Nitroreductase PF00881.19 gi|294494858|ref|YP_003541351.1| - 1.1e-25 90.3 0.0 1.3e-25 90.0 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family IF-2B PF01008.12 gi|294494859|ref|YP_003541352.1| - 6.1e-89 297.7 1.1 7e-89 297.5 0.8 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF1246 PF06849.7 gi|294494859|ref|YP_003541352.1| - 0.016 15.0 0.1 0.041 13.6 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1246) PyrI PF01948.13 gi|294494859|ref|YP_003541352.1| - 0.048 13.6 0.6 1.2 9.2 0.1 2.4 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, allosteric domain Aldedh PF00171.17 gi|294494861|ref|YP_003541354.1| - 7.6e-133 443.2 0.0 8.4e-133 443.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF427 PF04248.7 gi|294494862|ref|YP_003541355.1| - 6.4e-28 96.2 0.1 8.4e-28 95.8 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF427) Met_10 PF02475.11 gi|294494863|ref|YP_003541356.1| - 6.7e-48 162.9 0.0 8.2e-48 162.6 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|294494863|ref|YP_003541356.1| - 1.4e-08 34.8 0.0 2.1e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|294494863|ref|YP_003541356.1| - 1.1e-05 24.9 0.0 1.6e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.13 gi|294494863|ref|YP_003541356.1| - 0.0022 17.5 0.0 0.0035 16.9 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|294494863|ref|YP_003541356.1| - 0.013 16.0 0.0 0.024 15.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain PRMT5 PF05185.11 gi|294494863|ref|YP_003541356.1| - 0.029 13.2 0.0 0.042 12.7 0.0 1.1 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase Methyltransf_15 PF09445.5 gi|294494863|ref|YP_003541356.1| - 0.069 12.6 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase tRNA_deacylase PF04414.7 gi|294494864|ref|YP_003541357.1| - 3.4e-60 202.8 0.0 4.9e-60 202.2 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase OTCace_N PF02729.16 gi|294494864|ref|YP_003541357.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Tubulin PF00091.20 gi|294494865|ref|YP_003541358.1| - 4.4e-35 121.4 1.4 1.3e-34 119.8 1.0 1.7 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|294494865|ref|YP_003541358.1| - 4.9e-35 119.4 0.8 1.6e-34 117.8 0.6 1.9 1 0 0 1 1 1 1 FtsZ family, C-terminal domain Tubulin_2 PF13809.1 gi|294494865|ref|YP_003541358.1| - 0.08 11.8 0.1 0.08 11.8 0.1 1.6 2 0 0 2 2 2 0 Tubulin like Eno-Rase_NADH_b PF12242.3 gi|294494865|ref|YP_003541358.1| - 0.98 9.2 4.0 0.88 9.4 1.1 2.1 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DUF4064 PF13273.1 gi|294494866|ref|YP_003541359.1| - 0.014 15.4 0.1 0.014 15.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) SecE PF00584.15 gi|294494866|ref|YP_003541359.1| - 0.027 14.0 0.4 0.027 14.0 0.2 1.1 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex PsbX PF06596.6 gi|294494866|ref|YP_003541359.1| - 4.5 7.0 5.6 7.3 6.3 3.9 1.3 1 0 0 1 1 1 0 Photosystem II reaction centre X protein (PsbX) Spt5-NGN PF03439.8 gi|294494867|ref|YP_003541360.1| - 1.3e-22 79.3 0.1 1.8e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|294494867|ref|YP_003541360.1| - 6.9e-07 28.7 1.3 1.5e-05 24.4 0.2 2.8 3 0 0 3 3 3 1 KOW motif NusG PF02357.14 gi|294494867|ref|YP_003541360.1| - 0.0038 17.4 0.0 0.014 15.5 0.0 2.0 1 1 0 1 1 1 1 Transcription termination factor nusG Ribosomal_L11_N PF03946.9 gi|294494868|ref|YP_003541361.1| - 1.1e-26 92.0 1.2 1.7e-26 91.4 0.9 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|294494868|ref|YP_003541361.1| - 1.1e-18 67.1 0.4 1.1e-18 67.1 0.3 1.8 2 0 0 2 2 2 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.16 gi|294494869|ref|YP_003541362.1| - 1.5e-47 161.7 0.1 1.8e-47 161.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|294494870|ref|YP_003541363.1| - 4.6e-25 87.4 0.0 1e-24 86.3 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|294494870|ref|YP_003541363.1| - 2.3e-08 34.3 20.2 9.3e-08 32.3 14.0 2.1 1 1 0 1 1 1 1 60s Acidic ribosomal protein DUF2383 PF09537.5 gi|294494870|ref|YP_003541363.1| - 0.096 12.9 0.2 0.096 12.9 0.1 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF2383) Ribosomal_60s PF00428.14 gi|294494871|ref|YP_003541364.1| - 2.5e-17 63.0 24.7 3e-17 62.7 17.1 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein HD PF01966.17 gi|294494871|ref|YP_003541364.1| - 0.096 12.7 1.1 0.13 12.2 0.7 1.5 1 1 0 1 1 1 0 HD domain PepSY_2 PF13670.1 gi|294494871|ref|YP_003541364.1| - 0.14 12.1 10.2 1.3 8.9 0.0 2.2 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF1631 PF07793.6 gi|294494871|ref|YP_003541364.1| - 0.24 9.4 4.6 0.26 9.3 3.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) Sigma70_ner PF04546.8 gi|294494871|ref|YP_003541364.1| - 0.79 9.3 6.5 0.93 9.0 4.5 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region ISG65-75 PF11727.3 gi|294494871|ref|YP_003541364.1| - 1.2 8.1 4.9 1.6 7.7 3.4 1.1 1 0 0 1 1 1 0 Invariant surface glycoprotein Penicil_amidase PF01804.13 gi|294494871|ref|YP_003541364.1| - 1.6 7.6 5.1 1.8 7.5 3.5 1.0 1 0 0 1 1 1 0 Penicillin amidase Radical_SAM PF04055.16 gi|294494872|ref|YP_003541365.1| - 4.3e-13 49.7 0.0 6.6e-13 49.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|294494872|ref|YP_003541365.1| - 0.00085 19.4 0.0 0.0017 18.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|294494872|ref|YP_003541365.1| - 0.05 13.6 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain SAM_adeno_trans PF01887.11 gi|294494873|ref|YP_003541366.1| - 6.9e-83 277.6 0.0 7.7e-83 277.4 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase SSF PF00474.12 gi|294494874|ref|YP_003541367.1| - 1.2e-35 122.9 33.5 1.2e-35 122.9 23.3 1.5 2 0 0 2 2 2 1 Sodium:solute symporter family Spore_permease PF03845.8 gi|294494874|ref|YP_003541367.1| - 0.00012 20.8 11.5 0.00012 20.8 8.0 2.6 3 0 0 3 3 3 1 Spore germination protein Chordopox_A13L PF05961.6 gi|294494874|ref|YP_003541367.1| - 0.68 9.9 4.3 42 4.1 0.0 3.9 4 0 0 4 4 4 0 Chordopoxvirus A13L protein Sucrose_synth PF00862.14 gi|294494875|ref|YP_003541368.1| - 0.053 11.4 0.0 0.073 11.0 0.0 1.2 1 0 0 1 1 1 0 Sucrose synthase Lactamase_B_2 PF12706.2 gi|294494876|ref|YP_003541369.1| - 2.8e-28 98.7 0.8 3.4e-28 98.5 0.6 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|294494876|ref|YP_003541369.1| - 2.1e-21 76.5 0.7 2.8e-21 76.0 0.5 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|294494876|ref|YP_003541369.1| - 7e-13 48.5 0.2 9.7e-13 48.1 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AAA PF00004.24 gi|294494877|ref|YP_003541370.1| - 2.4e-38 131.3 0.0 5.3e-38 130.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|294494877|ref|YP_003541370.1| - 3.8e-08 34.1 0.5 4e-07 30.8 0.0 2.9 2 2 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|294494877|ref|YP_003541370.1| - 1.1e-07 31.6 0.1 4.7e-07 29.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|294494877|ref|YP_003541370.1| - 7.1e-07 29.5 0.0 2.7e-06 27.7 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|294494877|ref|YP_003541370.1| - 2.4e-05 24.2 0.0 0.00017 21.4 0.0 2.3 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|294494877|ref|YP_003541370.1| - 2.9e-05 23.1 0.2 8.2e-05 21.6 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_16 PF13191.1 gi|294494877|ref|YP_003541370.1| - 4.1e-05 23.6 0.5 0.0087 16.0 0.1 2.6 1 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|294494877|ref|YP_003541370.1| - 8e-05 22.7 0.5 0.0083 16.2 0.1 3.1 2 1 0 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|294494877|ref|YP_003541370.1| - 0.00018 21.5 0.0 0.00074 19.4 0.0 2.1 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_28 PF13521.1 gi|294494877|ref|YP_003541370.1| - 0.0003 20.7 0.0 0.0014 18.5 0.0 2.1 1 1 1 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|294494877|ref|YP_003541370.1| - 0.00041 19.4 0.1 0.00097 18.2 0.1 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|294494877|ref|YP_003541370.1| - 0.00084 18.1 0.0 0.0017 17.1 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus MMR_HSR1 PF01926.18 gi|294494877|ref|YP_003541370.1| - 0.0017 18.3 0.0 0.004 17.0 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Mg_chelatase PF01078.16 gi|294494877|ref|YP_003541370.1| - 0.0017 17.5 0.0 0.0044 16.2 0.0 1.7 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|294494877|ref|YP_003541370.1| - 0.0023 17.6 0.3 0.0075 15.9 0.0 1.9 2 0 0 2 2 2 1 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|294494877|ref|YP_003541370.1| - 0.0029 17.6 0.0 0.01 15.8 0.0 2.0 2 0 0 2 2 1 1 Sigma-54 interaction domain CPT PF07931.7 gi|294494877|ref|YP_003541370.1| - 0.005 16.4 0.0 0.0088 15.6 0.0 1.4 1 0 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein SKI PF01202.17 gi|294494877|ref|YP_003541370.1| - 0.0051 16.6 0.0 0.014 15.3 0.0 1.8 1 0 0 1 1 1 1 Shikimate kinase Zeta_toxin PF06414.7 gi|294494877|ref|YP_003541370.1| - 0.0076 15.3 0.0 0.017 14.2 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_24 PF13479.1 gi|294494877|ref|YP_003541370.1| - 0.0089 15.6 0.1 0.02 14.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|294494877|ref|YP_003541370.1| - 0.0095 15.3 0.0 0.021 14.2 0.0 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|294494877|ref|YP_003541370.1| - 0.0096 15.3 0.4 0.22 10.9 0.0 2.4 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|294494877|ref|YP_003541370.1| - 0.0098 15.7 0.0 0.028 14.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|294494877|ref|YP_003541370.1| - 0.015 15.1 0.0 0.043 13.7 0.0 1.7 1 0 0 1 1 1 0 Cytidylate kinase-like family Sigma54_activat PF00158.21 gi|294494877|ref|YP_003541370.1| - 0.02 14.3 0.0 0.049 13.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|294494877|ref|YP_003541370.1| - 0.023 14.9 0.0 0.069 13.4 0.0 1.8 1 1 1 2 2 1 0 ABC transporter AAA_3 PF07726.6 gi|294494877|ref|YP_003541370.1| - 0.025 14.1 0.0 0.049 13.2 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.1 gi|294494877|ref|YP_003541370.1| - 0.028 14.3 0.3 0.13 12.2 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|294494877|ref|YP_003541370.1| - 0.028 13.9 0.0 0.14 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.1 gi|294494877|ref|YP_003541370.1| - 0.045 13.3 0.0 0.1 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|294494877|ref|YP_003541370.1| - 0.069 12.3 0.0 0.17 11.1 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NACHT PF05729.7 gi|294494877|ref|YP_003541370.1| - 0.077 12.6 0.1 3.5 7.2 0.0 2.4 2 0 0 2 2 2 0 NACHT domain FtsK_SpoIIIE PF01580.13 gi|294494877|ref|YP_003541370.1| - 0.077 12.4 0.1 10 5.5 0.0 2.4 1 1 1 2 2 2 0 FtsK/SpoIIIE family RNA_helicase PF00910.17 gi|294494877|ref|YP_003541370.1| - 0.11 12.6 0.0 0.26 11.4 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.1 gi|294494877|ref|YP_003541370.1| - 0.65 10.2 4.9 15 5.7 3.4 2.7 1 1 0 1 1 1 0 AAA domain DUF977 PF06163.6 gi|294494878|ref|YP_003541371.1| - 0.016 14.9 0.0 0.031 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) DUF1922 PF09082.5 gi|294494878|ref|YP_003541371.1| - 0.18 11.9 6.0 0.046 13.7 2.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1922) Ribosomal_S27e PF01667.12 gi|294494878|ref|YP_003541371.1| - 0.2 11.2 4.6 0.35 10.4 3.2 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 Elf1 PF05129.8 gi|294494878|ref|YP_003541371.1| - 0.37 10.5 5.2 1.2 8.8 3.6 1.8 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_5 PF13719.1 gi|294494878|ref|YP_003541371.1| - 0.4 10.2 5.9 0.85 9.2 4.1 1.6 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|294494878|ref|YP_003541371.1| - 1.1 9.0 6.3 2.8 7.7 4.4 1.8 1 0 0 1 1 1 0 zinc-ribbon domain Prenyltransf PF01255.14 gi|294494879|ref|YP_003541372.1| - 6.9e-32 110.3 0.0 9.2e-31 106.6 0.0 2.1 1 1 1 2 2 2 2 Putative undecaprenyl diphosphate synthase MMR_HSR1_C PF08438.5 gi|294494880|ref|YP_003541373.1| - 2.2e-31 108.3 0.1 6.7e-31 106.7 0.0 1.8 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|294494880|ref|YP_003541373.1| - 3.6e-16 59.1 0.0 7.6e-16 58.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|294494880|ref|YP_003541373.1| - 3.5e-13 49.1 0.0 8.6e-13 47.9 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|294494880|ref|YP_003541373.1| - 3.8e-09 36.0 0.6 2.2e-07 30.2 0.0 2.8 3 0 0 3 3 3 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.8 gi|294494880|ref|YP_003541373.1| - 0.0041 16.8 0.1 1 9.2 0.0 2.7 1 1 1 2 2 2 1 Protein of unknown function (DUF933) ThiS PF02597.15 gi|294494880|ref|YP_003541373.1| - 0.08 13.3 0.0 0.39 11.1 0.0 2.1 2 0 0 2 2 2 0 ThiS family Cupin_2 PF07883.6 gi|294494880|ref|YP_003541373.1| - 0.14 11.6 0.0 0.3 10.6 0.0 1.5 1 0 0 1 1 1 0 Cupin domain HATPase_c PF02518.21 gi|294494881|ref|YP_003541374.1| - 2e-34 117.6 0.0 4.6e-34 116.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|294494881|ref|YP_003541374.1| - 4.4e-18 65.0 0.0 1.3e-17 63.5 0.0 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|294494881|ref|YP_003541374.1| - 8.4e-16 58.7 0.0 8e-07 29.6 0.0 2.6 2 0 0 2 2 2 2 GAF domain GAF PF01590.21 gi|294494881|ref|YP_003541374.1| - 7.9e-13 48.7 0.0 6.1e-08 32.9 0.0 2.5 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|294494881|ref|YP_003541374.1| - 7.4e-12 45.4 0.0 3.7e-05 23.8 0.0 3.1 3 0 0 3 3 3 2 GAF domain NOD PF06816.8 gi|294494881|ref|YP_003541374.1| - 0.0086 15.1 0.4 6.3 5.9 0.0 3.1 3 0 0 3 3 3 2 NOTCH protein HATPase_c_2 PF13581.1 gi|294494881|ref|YP_003541374.1| - 0.06 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF4473 PF14747.1 gi|294494881|ref|YP_003541374.1| - 0.5 10.6 5.5 0.52 10.5 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4473) Cytochrome_cB PF11783.3 gi|294494883|ref|YP_003541376.1| - 6e-54 182.0 0.7 6e-54 182.0 0.5 5.0 7 0 0 7 7 7 1 Cytochrome c bacterial Cytochrome_C554 PF13435.1 gi|294494883|ref|YP_003541376.1| - 8e-25 87.3 28.9 6.6e-22 77.9 5.8 4.2 3 1 2 5 5 5 3 Cytochrome c554 and c-prime Cytochrome_C7 PF14522.1 gi|294494883|ref|YP_003541376.1| - 1.2e-07 31.2 34.7 0.0037 16.8 8.7 5.1 2 1 2 5 5 5 4 Cytochrome c7 Cytochrom_c3_2 PF14537.1 gi|294494883|ref|YP_003541376.1| - 1.3e-05 25.4 32.7 0.025 14.9 1.4 4.7 3 2 1 4 4 4 3 Cytochrome c3 Paired_CXXCH_1 PF09699.5 gi|294494883|ref|YP_003541376.1| - 7.8e-05 22.1 34.6 0.041 13.4 0.9 6.0 5 2 1 6 6 6 3 Doubled CXXCH motif (Paired_CXXCH_1) Multi-haem_cyto PF13447.1 gi|294494883|ref|YP_003541376.1| - 0.0021 17.1 1.0 0.0021 17.1 0.7 4.8 4 1 0 4 4 4 1 Seven times multi-haem cytochrome CxxCH zf-CHY PF05495.7 gi|294494883|ref|YP_003541376.1| - 5.5 7.2 29.7 10 6.3 0.6 4.6 3 2 1 4 4 4 0 CHY zinc finger Cpn60_TCP1 PF00118.19 gi|294494884|ref|YP_003541377.1| - 4.9e-165 549.8 12.9 5.5e-165 549.6 8.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family BioY PF02632.9 gi|294494885|ref|YP_003541378.1| - 1.5e-46 157.7 25.2 2.2e-46 157.1 17.5 1.2 1 0 0 1 1 1 1 BioY family Pox_A9 PF04835.7 gi|294494885|ref|YP_003541378.1| - 0.0074 16.1 5.9 1.1 9.1 0.6 2.7 2 0 0 2 2 2 2 A9 protein conserved region DUF3816 PF12822.2 gi|294494885|ref|YP_003541378.1| - 0.02 14.7 32.5 0.046 13.6 22.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) DUF2269 PF10027.4 gi|294494885|ref|YP_003541378.1| - 1.7 8.3 12.1 0.16 11.7 2.3 2.4 2 1 0 2 2 2 0 Predicted integral membrane protein (DUF2269) Vps55 PF04133.9 gi|294494885|ref|YP_003541378.1| - 3.9 7.2 9.2 0.13 12.0 0.7 2.3 2 1 0 2 2 2 0 Vacuolar protein sorting 55 5TM-5TMR_LYT PF07694.7 gi|294494885|ref|YP_003541378.1| - 8.3 5.7 25.8 1.8e+02 1.3 17.9 2.2 1 1 0 1 1 1 0 5TMR of 5TMR-LYT ABC_tran PF00005.22 gi|294494886|ref|YP_003541379.1| - 1.2e-24 87.1 0.0 2.5e-24 86.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|294494886|ref|YP_003541379.1| - 1.5e-09 37.4 2.6 5.6e-08 32.2 1.8 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|294494886|ref|YP_003541379.1| - 2.5e-08 34.2 1.4 0.004 17.1 0.0 2.8 2 1 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|294494886|ref|YP_003541379.1| - 2.5e-05 23.7 0.0 5.3e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|294494886|ref|YP_003541379.1| - 0.00031 20.7 0.0 0.00054 20.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|294494886|ref|YP_003541379.1| - 0.0017 18.4 0.2 0.032 14.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|294494886|ref|YP_003541379.1| - 0.0019 17.6 0.0 0.01 15.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|294494886|ref|YP_003541379.1| - 0.0029 17.3 0.4 0.72 9.5 0.1 2.2 2 0 0 2 2 2 1 NTPase AAA_33 PF13671.1 gi|294494886|ref|YP_003541379.1| - 0.0047 16.8 0.0 0.023 14.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|294494886|ref|YP_003541379.1| - 0.016 15.1 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|294494886|ref|YP_003541379.1| - 0.019 14.1 0.0 0.038 13.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|294494886|ref|YP_003541379.1| - 0.019 15.3 0.1 0.034 14.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|294494886|ref|YP_003541379.1| - 0.04 13.3 1.7 0.6 9.4 0.3 2.1 1 1 0 2 2 2 0 AAA-like domain NACHT PF05729.7 gi|294494886|ref|YP_003541379.1| - 0.041 13.5 0.0 0.082 12.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain MutS_V PF00488.16 gi|294494886|ref|YP_003541379.1| - 0.05 13.0 0.1 0.14 11.5 0.0 1.7 2 0 0 2 2 2 0 MutS domain V AAA_5 PF07728.9 gi|294494886|ref|YP_003541379.1| - 0.057 13.1 0.3 0.28 10.9 0.0 2.1 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|294494886|ref|YP_003541379.1| - 0.064 13.1 0.0 4.9 7.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|294494886|ref|YP_003541379.1| - 0.088 12.4 0.1 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Mg_chelatase PF01078.16 gi|294494886|ref|YP_003541379.1| - 0.093 11.8 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI T2SE PF00437.15 gi|294494886|ref|YP_003541379.1| - 0.1 11.4 0.0 0.19 10.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|294494886|ref|YP_003541379.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Miro PF08477.8 gi|294494886|ref|YP_003541379.1| - 0.12 12.8 0.0 0.29 11.6 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_24 PF13479.1 gi|294494886|ref|YP_003541379.1| - 0.14 11.7 0.0 0.63 9.5 0.0 1.9 1 1 1 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|294494886|ref|YP_003541379.1| - 0.17 11.4 0.0 0.42 10.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|294494887|ref|YP_003541380.1| - 5.2e-27 94.8 0.0 9.5e-27 93.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|294494887|ref|YP_003541380.1| - 1.4e-09 38.3 0.1 0.00051 20.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|294494887|ref|YP_003541380.1| - 0.00014 21.1 0.0 0.0012 18.1 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|294494887|ref|YP_003541380.1| - 0.00025 20.5 0.2 0.31 10.4 0.1 2.2 1 1 1 2 2 2 2 AAA-like domain UPF0079 PF02367.12 gi|294494887|ref|YP_003541380.1| - 0.00091 18.8 0.1 0.002 17.7 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_29 PF13555.1 gi|294494887|ref|YP_003541380.1| - 0.0047 16.4 0.0 0.0086 15.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|294494887|ref|YP_003541380.1| - 0.0049 17.6 0.1 0.014 16.1 0.1 1.9 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|294494887|ref|YP_003541380.1| - 0.01 15.4 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|294494887|ref|YP_003541380.1| - 0.019 13.7 0.0 0.032 13.0 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_19 PF13245.1 gi|294494887|ref|YP_003541380.1| - 0.037 13.7 0.0 0.092 12.5 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain SbcCD_C PF13558.1 gi|294494887|ref|YP_003541380.1| - 0.043 13.7 0.1 0.37 10.7 0.0 2.3 1 1 1 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|294494887|ref|YP_003541380.1| - 0.044 13.9 0.0 0.12 12.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|294494887|ref|YP_003541380.1| - 0.057 13.4 0.0 0.096 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.1 gi|294494887|ref|YP_003541380.1| - 0.066 13.1 0.0 0.22 11.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain PRK PF00485.13 gi|294494887|ref|YP_003541380.1| - 0.071 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family CoaE PF01121.15 gi|294494887|ref|YP_003541380.1| - 0.076 12.4 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Dephospho-CoA kinase AAA_18 PF13238.1 gi|294494887|ref|YP_003541380.1| - 0.09 13.0 0.0 0.45 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|294494887|ref|YP_003541380.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 NTPase DUF258 PF03193.11 gi|294494887|ref|YP_003541380.1| - 0.17 11.0 0.0 0.25 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 CbiQ PF02361.11 gi|294494888|ref|YP_003541381.1| - 4.5e-33 114.7 10.1 4.5e-33 114.7 7.0 1.6 2 0 0 2 2 2 1 Cobalt transport protein DUF1385 PF07136.6 gi|294494888|ref|YP_003541381.1| - 0.74 8.8 0.0 0.74 8.8 0.0 2.7 3 1 1 4 4 4 0 Protein of unknown function (DUF1385) PalH PF08733.5 gi|294494888|ref|YP_003541381.1| - 1.4 7.6 8.2 0.42 9.3 3.7 1.6 2 0 0 2 2 2 0 PalH/RIM21 MotB_plug PF13677.1 gi|294494888|ref|YP_003541381.1| - 6.4 6.1 14.2 0.061 12.6 1.1 2.5 2 0 0 2 2 2 0 Membrane MotB of proton-channel complex MotA/MotB Hydantoinase_A PF01968.13 gi|294494889|ref|YP_003541382.1| - 1.2e-74 251.0 3.1 1.4e-74 250.8 0.0 2.4 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|294494889|ref|YP_003541382.1| - 6.3e-45 152.8 0.3 7.8e-41 139.5 0.0 2.5 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|294494889|ref|YP_003541382.1| - 6.1e-06 24.8 0.9 0.028 12.7 0.0 2.1 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|294494889|ref|YP_003541382.1| - 0.017 14.4 0.0 0.56 9.4 0.0 2.4 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family StbA PF06406.6 gi|294494889|ref|YP_003541382.1| - 0.095 11.6 0.1 0.18 10.7 0.1 1.4 1 0 0 1 1 1 0 StbA protein FtsA PF14450.1 gi|294494889|ref|YP_003541382.1| - 1.2 8.9 3.8 0.44 10.3 0.2 2.1 2 0 0 2 2 2 0 Cell division protein FtsA Sigma54_AID PF00309.15 gi|294494890|ref|YP_003541383.1| - 0.17 11.4 0.4 0.35 10.3 0.3 1.6 1 1 0 1 1 1 0 Sigma-54 factor, Activator interacting domain (AID) F_bP_aldolase PF01116.15 gi|294494891|ref|YP_003541384.1| - 2.5e-23 82.6 0.0 3.1e-23 82.3 0.0 1.1 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II Tagatose_6_P_K PF08013.6 gi|294494891|ref|YP_003541384.1| - 6.6e-10 37.9 0.0 9.3e-10 37.5 0.0 1.1 1 0 0 1 1 1 1 Tagatose 6 phosphate kinase DrsE_2 PF13686.1 gi|294494892|ref|YP_003541385.1| - 4.6e-07 29.7 0.2 5e-07 29.6 0.1 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|294494892|ref|YP_003541385.1| - 1.3e-06 28.4 0.0 1.4e-06 28.4 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DUF167 PF02594.11 gi|294494893|ref|YP_003541386.1| - 9.5e-16 57.5 0.2 1.1e-15 57.2 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 DUF2805 PF10985.3 gi|294494893|ref|YP_003541386.1| - 0.026 14.4 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2805) F420_oxidored PF03807.12 gi|294494894|ref|YP_003541387.1| - 3.6e-21 75.3 0.2 6.4e-21 74.5 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|294494894|ref|YP_003541387.1| - 0.0014 18.0 0.1 0.0028 17.1 0.0 1.5 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA adh_short PF00106.20 gi|294494894|ref|YP_003541387.1| - 0.0016 18.3 0.1 0.035 14.0 0.1 2.1 2 0 0 2 2 2 1 short chain dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|294494894|ref|YP_003541387.1| - 0.0019 17.9 1.0 0.004 16.9 0.7 1.7 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Semialdhyde_dh PF01118.19 gi|294494894|ref|YP_003541387.1| - 0.011 16.0 0.1 0.023 15.0 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain PDH PF02153.12 gi|294494894|ref|YP_003541387.1| - 0.08 11.8 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase IlvN PF07991.7 gi|294494894|ref|YP_003541387.1| - 0.1 11.9 0.3 0.26 10.6 0.2 1.6 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Glu_synthase PF01645.12 gi|294494895|ref|YP_003541388.1| - 1.8e-12 46.9 0.0 4.1e-09 35.8 0.0 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase P-II PF00543.17 gi|294494897|ref|YP_003541390.1| - 2.2e-39 134.0 0.5 2.5e-39 133.8 0.3 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II FRD2 PF03197.8 gi|294494897|ref|YP_003541390.1| - 0.061 13.8 0.3 0.12 12.9 0.1 1.6 1 1 0 1 1 1 0 Bacteriophage FRD2 protein Ammonium_transp PF00909.16 gi|294494898|ref|YP_003541391.1| - 3.9e-117 391.1 39.0 4.9e-117 390.7 27.1 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family DUF2178 PF09946.4 gi|294494899|ref|YP_003541392.1| - 4.4e-20 71.4 2.5 5.2e-20 71.2 1.7 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) 7TMR-DISM_7TM PF07695.6 gi|294494899|ref|YP_003541392.1| - 0.0069 16.0 8.2 0.013 15.2 5.7 1.4 1 1 0 1 1 1 1 7TM diverse intracellular signalling DUF3796 PF12676.2 gi|294494899|ref|YP_003541392.1| - 0.04 14.1 0.9 0.04 14.1 0.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3796) DUF2975 PF11188.3 gi|294494899|ref|YP_003541392.1| - 1.9 8.2 6.4 2.3 7.9 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) DUF1469 PF07332.6 gi|294494899|ref|YP_003541392.1| - 2.1 8.1 7.4 0.32 10.7 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) HTH_3 PF01381.17 gi|294494900|ref|YP_003541393.1| - 4.5e-17 61.6 0.0 4.9e-17 61.5 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|294494900|ref|YP_003541393.1| - 1.8e-11 43.9 0.2 1.9e-11 43.8 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|294494900|ref|YP_003541393.1| - 9.2e-10 38.5 0.0 1.1e-09 38.3 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.1 gi|294494900|ref|YP_003541393.1| - 8.9e-07 29.0 0.0 9.2e-07 28.9 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|294494900|ref|YP_003541393.1| - 7.4e-05 22.2 0.1 8.9e-05 22.0 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|294494900|ref|YP_003541393.1| - 0.00014 21.3 0.1 0.00024 20.7 0.1 1.3 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.11 gi|294494900|ref|YP_003541393.1| - 0.00099 18.3 0.2 0.0016 17.7 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.1 gi|294494900|ref|YP_003541393.1| - 0.0012 18.6 0.1 0.0016 18.2 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|294494900|ref|YP_003541393.1| - 0.0056 16.3 0.0 0.0081 15.8 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|294494900|ref|YP_003541393.1| - 0.01 15.6 0.0 0.014 15.1 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_38 PF13936.1 gi|294494900|ref|YP_003541393.1| - 0.045 13.3 0.1 0.064 12.8 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|294494900|ref|YP_003541393.1| - 0.046 13.1 0.1 2.8 7.4 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 GntR PF00392.16 gi|294494900|ref|YP_003541393.1| - 0.082 12.3 0.1 0.14 11.6 0.0 1.4 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_24 PF13412.1 gi|294494900|ref|YP_003541393.1| - 0.1 12.0 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|294494900|ref|YP_003541393.1| - 0.13 11.9 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Gln-synt_C PF00120.19 gi|294494901|ref|YP_003541394.1| - 9.9e-97 323.1 0.0 1.2e-96 322.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|294494901|ref|YP_003541394.1| - 5.8e-30 102.7 0.1 1.1e-29 101.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain PKD PF00801.15 gi|294494902|ref|YP_003541395.1| - 1.4e-35 120.8 32.5 1.8e-19 69.2 3.6 4.1 3 0 0 3 3 3 3 PKD domain DUF1628 PF07790.6 gi|294494902|ref|YP_003541395.1| - 2.3e-13 50.6 0.1 2.3e-13 50.6 0.1 4.3 5 1 0 5 5 5 1 Protein of unknown function (DUF1628) Big_3_4 PF13754.1 gi|294494902|ref|YP_003541395.1| - 2.6e-05 24.4 11.0 2.6e-05 24.4 7.6 5.4 3 2 0 3 3 3 2 Bacterial Ig-like domain (group 3) BiPBP_C PF06832.7 gi|294494902|ref|YP_003541395.1| - 5e-05 23.1 0.0 0.49 10.3 0.0 4.3 5 0 0 5 5 5 1 Penicillin-Binding Protein C-terminus Family DUF4625 PF15418.1 gi|294494902|ref|YP_003541395.1| - 0.00069 19.7 7.3 0.48 10.5 0.1 4.1 3 1 1 4 4 4 2 Domain of unknown function (DUF4625) ChitinaseA_N PF08329.5 gi|294494902|ref|YP_003541395.1| - 0.017 14.9 5.2 2.2 8.0 0.1 4.2 4 0 0 4 4 4 0 Chitinase A, N-terminal domain Y_Y_Y PF07495.8 gi|294494902|ref|YP_003541395.1| - 0.09 12.5 14.9 0.59 9.9 1.8 4.3 4 0 0 4 4 4 0 Y_Y_Y domain SoxZ PF08770.6 gi|294494902|ref|YP_003541395.1| - 0.091 12.1 0.6 1.1 8.7 0.1 2.7 2 0 0 2 2 2 0 Sulphur oxidation protein SoxZ He_PIG PF05345.7 gi|294494902|ref|YP_003541395.1| - 0.67 10.0 18.9 0.22 11.5 1.3 4.4 3 0 0 3 3 3 0 Putative Ig domain DUF1894 PF08979.6 gi|294494904|ref|YP_003541397.1| - 6.2e-31 106.2 0.1 7e-31 106.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) DUF295 PF03478.13 gi|294494904|ref|YP_003541397.1| - 0.13 11.6 0.1 0.32 10.3 0.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF295) AIRS_C PF02769.17 gi|294494905|ref|YP_003541398.1| - 8.2e-21 74.6 0.0 1.4e-20 73.8 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|294494905|ref|YP_003541398.1| - 1.9e-14 53.6 0.5 3.4e-14 52.8 0.3 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AA_kinase PF00696.23 gi|294494906|ref|YP_003541399.1| - 2.2e-51 174.7 1.3 3e-51 174.3 0.1 1.7 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|294494906|ref|YP_003541399.1| - 1.2e-25 88.7 4.3 6.1e-12 44.8 0.0 2.9 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|294494906|ref|YP_003541399.1| - 9.1e-23 79.3 6.3 1.3e-11 43.6 0.1 3.0 3 0 0 3 3 3 2 ACT domain Hydrolase_6 PF13344.1 gi|294494906|ref|YP_003541399.1| - 0.0024 17.7 0.0 7.3 6.5 0.0 3.6 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase ACT_6 PF13740.1 gi|294494906|ref|YP_003541399.1| - 0.014 15.0 2.1 0.052 13.2 0.1 2.7 3 0 0 3 3 3 0 ACT domain LytR_C PF13399.1 gi|294494906|ref|YP_003541399.1| - 0.09 13.1 0.0 17 5.8 0.0 2.5 1 1 1 2 2 2 0 LytR cell envelope-related transcriptional attenuator S-layer PF07752.6 gi|294494907|ref|YP_003541400.1| - 7.1e-13 48.3 15.8 5.3e-07 29.0 1.7 2.5 2 1 1 3 3 3 2 S-layer protein ChitinaseA_N PF08329.5 gi|294494907|ref|YP_003541400.1| - 0.022 14.5 0.5 0.086 12.6 0.0 2.2 3 0 0 3 3 3 0 Chitinase A, N-terminal domain DUF4397 PF14344.1 gi|294494907|ref|YP_003541400.1| - 0.056 13.7 1.0 0.15 12.4 0.1 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4397) PhosphMutase PF10143.4 gi|294494908|ref|YP_003541401.1| - 3.9e-54 182.8 0.0 5.8e-54 182.3 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|294494908|ref|YP_003541401.1| - 1.6e-46 158.7 0.1 1.9e-46 158.5 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|294494908|ref|YP_003541401.1| - 0.045 13.0 0.0 0.11 11.8 0.0 1.6 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase HSP20 PF00011.16 gi|294494909|ref|YP_003541402.1| - 4.2e-22 77.9 1.4 5.1e-22 77.6 1.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|294494909|ref|YP_003541402.1| - 0.00039 20.8 0.1 0.00075 19.9 0.1 1.4 1 1 0 1 1 1 1 CS domain GvpH PF05455.6 gi|294494909|ref|YP_003541402.1| - 0.0068 16.0 0.2 0.01 15.4 0.1 1.4 1 0 0 1 1 1 1 GvpH F420_ligase PF01996.11 gi|294494910|ref|YP_003541403.1| - 1e-59 201.3 0.7 1.2e-59 201.2 0.5 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase dCMP_cyt_deam_1 PF00383.17 gi|294494911|ref|YP_003541404.1| - 1e-29 102.1 1.9 1.4e-29 101.7 1.3 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region APOBEC_N PF08210.6 gi|294494911|ref|YP_003541404.1| - 0.00026 20.6 0.6 0.00032 20.3 0.4 1.2 1 0 0 1 1 1 1 APOBEC-like N-terminal domain XOO_2897-deam PF14440.1 gi|294494911|ref|YP_003541404.1| - 0.0026 17.4 0.1 0.0029 17.2 0.1 1.2 1 0 0 1 1 1 1 Xanthomonas XOO_2897-like deaminase Bd3614-deam PF14439.1 gi|294494911|ref|YP_003541404.1| - 0.0057 16.5 1.0 0.014 15.2 0.3 1.8 1 1 1 2 2 2 1 Bd3614-like deaminase MafB19-deam PF14437.1 gi|294494911|ref|YP_003541404.1| - 0.0094 15.5 1.6 0.012 15.2 1.1 1.2 1 0 0 1 1 1 1 MafB19-like deaminase zf-C3HC4 PF00097.20 gi|294494911|ref|YP_003541404.1| - 0.53 9.9 6.9 0.057 13.0 1.2 2.1 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) SecD_SecF PF02355.11 gi|294494912|ref|YP_003541405.1| - 1.4e-34 118.9 14.6 1.4e-34 118.9 10.1 1.7 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|294494912|ref|YP_003541405.1| - 3.8e-06 25.7 0.2 1e-05 24.4 0.0 1.9 2 0 0 2 2 2 1 SecD/SecF GG Motif Patched PF02460.13 gi|294494912|ref|YP_003541405.1| - 2.8e-05 22.2 13.2 4.2e-05 21.6 9.2 1.2 1 0 0 1 1 1 1 Patched family Oleosin PF01277.12 gi|294494912|ref|YP_003541405.1| - 0.053 13.0 0.5 0.053 13.0 0.4 3.2 3 0 0 3 3 3 0 Oleosin DUF4097 PF13349.1 gi|294494912|ref|YP_003541405.1| - 0.83 9.1 3.1 4.7 6.7 0.8 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4097) SecD_SecF PF02355.11 gi|294494913|ref|YP_003541406.1| - 1.6e-16 60.0 9.0 2.8e-16 59.2 6.2 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|294494913|ref|YP_003541406.1| - 0.0003 19.8 0.1 0.00098 18.2 0.1 1.9 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.10 gi|294494913|ref|YP_003541406.1| - 0.00079 18.2 12.6 0.0014 17.4 8.7 1.3 1 0 0 1 1 1 1 MMPL family DNA_pol3_delta2 PF13177.1 gi|294494914|ref|YP_003541407.1| - 2.9e-13 49.7 0.0 4e-13 49.3 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|294494914|ref|YP_003541407.1| - 1.4e-12 47.4 0.0 3.1e-12 46.3 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|294494914|ref|YP_003541407.1| - 8.6e-08 32.4 0.0 1.7e-07 31.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|294494914|ref|YP_003541407.1| - 1.7e-07 30.5 0.0 0.016 14.2 0.0 3.0 2 1 1 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus DNA_pol3_delta PF06144.8 gi|294494914|ref|YP_003541407.1| - 0.00022 20.8 0.0 0.00036 20.0 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_22 PF13401.1 gi|294494914|ref|YP_003541407.1| - 0.00036 20.6 0.0 0.001 19.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|294494914|ref|YP_003541407.1| - 0.0016 17.1 0.0 0.0027 16.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|294494914|ref|YP_003541407.1| - 0.0023 17.9 0.0 0.027 14.4 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|294494914|ref|YP_003541407.1| - 0.004 17.0 0.0 0.014 15.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|294494914|ref|YP_003541407.1| - 0.0071 15.1 0.0 0.016 13.9 0.0 1.5 1 1 0 1 1 1 1 TIP49 C-terminus Sigma54_activ_2 PF14532.1 gi|294494914|ref|YP_003541407.1| - 0.0078 16.2 0.1 0.31 11.0 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|294494914|ref|YP_003541407.1| - 0.033 15.0 0.0 0.087 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|294494914|ref|YP_003541407.1| - 0.039 14.2 0.0 0.088 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|294494914|ref|YP_003541407.1| - 0.085 12.5 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.1 gi|294494914|ref|YP_003541407.1| - 0.088 12.3 0.0 3.1 7.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|294494914|ref|YP_003541407.1| - 0.1 12.0 0.0 0.28 10.6 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family Radical_SAM PF04055.16 gi|294494915|ref|YP_003541408.1| - 2.7e-17 63.4 0.0 1.3e-16 61.1 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|294494915|ref|YP_003541408.1| - 1.5e-10 40.9 0.2 4.4e-10 39.4 0.1 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|294494915|ref|YP_003541408.1| - 0.015 15.4 0.0 0.041 14.0 0.0 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain TrmB PF01978.14 gi|294494916|ref|YP_003541409.1| - 0.00043 19.9 0.1 0.00083 19.0 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FeoC PF09012.5 gi|294494916|ref|YP_003541409.1| - 0.01 15.4 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator RuvB_C PF05491.8 gi|294494916|ref|YP_003541409.1| - 0.043 13.4 0.1 0.12 11.9 0.1 1.7 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus HTH_5 PF01022.15 gi|294494916|ref|YP_003541409.1| - 0.13 11.9 0.1 0.29 10.8 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family CbiA PF01656.18 gi|294494917|ref|YP_003541410.1| - 4.5e-23 81.6 0.0 5.3e-23 81.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|294494917|ref|YP_003541410.1| - 2.5e-20 72.9 0.0 3.4e-20 72.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain VirC1 PF07015.6 gi|294494917|ref|YP_003541410.1| - 1.1e-07 31.2 0.1 0.0024 16.9 0.0 2.1 2 0 0 2 2 2 2 VirC1 protein SRP54 PF00448.17 gi|294494917|ref|YP_003541410.1| - 8.3e-07 28.6 0.0 0.0084 15.5 0.0 2.2 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain YhjQ PF06564.7 gi|294494917|ref|YP_003541410.1| - 2.9e-06 26.8 0.0 1.3e-05 24.6 0.0 1.8 1 1 0 1 1 1 1 YhjQ protein MipZ PF09140.6 gi|294494917|ref|YP_003541410.1| - 4.4e-06 25.9 0.0 0.00021 20.4 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|294494917|ref|YP_003541410.1| - 4.8e-05 22.5 0.0 0.00014 21.0 0.0 1.7 1 1 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.4 gi|294494917|ref|YP_003541410.1| - 0.0015 18.3 0.6 0.0054 16.5 0.4 1.9 1 1 0 1 1 1 1 ParA/MinD ATPase like AAA_19 PF13245.1 gi|294494917|ref|YP_003541410.1| - 0.015 15.0 0.0 0.053 13.2 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain AAA_25 PF13481.1 gi|294494917|ref|YP_003541410.1| - 0.02 14.3 0.3 0.099 12.0 0.2 2.1 1 1 0 1 1 1 0 AAA domain Fer4_NifH PF00142.13 gi|294494917|ref|YP_003541410.1| - 0.058 12.5 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Zot PF05707.7 gi|294494917|ref|YP_003541410.1| - 0.059 12.8 0.0 1 8.7 0.0 2.3 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) ArgK PF03308.11 gi|294494917|ref|YP_003541410.1| - 0.067 11.9 0.0 7 5.3 0.0 2.2 2 0 0 2 2 2 0 ArgK protein DUF3391 PF11871.3 gi|294494917|ref|YP_003541410.1| - 0.068 13.3 0.0 0.26 11.4 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3391) DUF1273 PF06908.6 gi|294494917|ref|YP_003541410.1| - 0.096 12.3 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1273) LpxK PF02606.9 gi|294494917|ref|YP_003541410.1| - 0.16 10.8 0.0 0.29 10.0 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase Fae PF08714.6 gi|294494919|ref|YP_003541412.1| - 7.3e-73 243.5 1.2 1.3e-72 242.7 0.1 1.8 2 0 0 2 2 2 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.19 gi|294494919|ref|YP_003541412.1| - 4.3e-26 91.7 0.7 7.1e-26 90.9 0.2 1.6 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|294494919|ref|YP_003541412.1| - 1.1e-05 24.6 0.9 0.0001 21.5 0.6 2.3 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.12 gi|294494919|ref|YP_003541412.1| - 0.0023 17.2 0.4 0.021 14.0 0.1 2.2 2 0 0 2 2 2 1 PcrB family QRPTase_C PF01729.14 gi|294494919|ref|YP_003541412.1| - 0.0056 16.2 0.3 0.038 13.5 0.0 2.3 2 1 1 3 3 3 1 Quinolinate phosphoribosyl transferase, C-terminal domain Cas_csx3 PF09620.5 gi|294494919|ref|YP_003541412.1| - 0.026 14.3 0.2 1.4 8.7 0.0 3.0 2 1 1 3 3 3 0 CRISPR-associated protein (Cas_csx3) TIM PF00121.13 gi|294494920|ref|YP_003541413.1| - 1.8e-28 99.2 0.3 3.5e-26 91.7 0.2 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|294494920|ref|YP_003541413.1| - 1.8e-05 23.9 0.3 5.1e-05 22.4 0.2 1.7 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.13 gi|294494920|ref|YP_003541413.1| - 0.0092 14.8 1.9 0.01 14.7 0.3 1.7 2 0 0 2 2 2 1 FMN-dependent dehydrogenase IGPS PF00218.16 gi|294494920|ref|YP_003541413.1| - 0.14 11.1 0.0 0.24 10.4 0.0 1.4 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase PDH PF02153.12 gi|294494922|ref|YP_003541415.1| - 4e-54 183.2 0.0 5e-54 182.8 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.12 gi|294494922|ref|YP_003541415.1| - 3.7e-07 30.4 0.0 7.9e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|294494922|ref|YP_003541415.1| - 3.3e-06 27.0 0.0 7e-06 25.9 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|294494922|ref|YP_003541415.1| - 2.4e-05 23.5 0.0 4.5e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NmrA PF05368.8 gi|294494922|ref|YP_003541415.1| - 0.0019 17.5 0.0 0.0035 16.6 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family NAD_Gly3P_dh_N PF01210.18 gi|294494922|ref|YP_003541415.1| - 0.057 13.1 1.5 0.87 9.2 1.0 2.2 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|294494922|ref|YP_003541415.1| - 0.076 12.6 0.1 1.9 8.0 0.0 2.4 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|294494922|ref|YP_003541415.1| - 0.079 12.3 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|294494922|ref|YP_003541415.1| - 0.12 12.3 0.0 0.3 11.0 0.0 1.7 1 0 0 1 1 1 0 NADH(P)-binding Shikimate_dh_N PF08501.6 gi|294494923|ref|YP_003541416.1| - 3.3e-26 91.1 0.0 6.6e-26 90.1 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|294494923|ref|YP_003541416.1| - 1.9e-17 63.6 0.1 3.1e-17 62.9 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|294494923|ref|YP_003541416.1| - 2.9e-06 27.6 0.2 5.9e-06 26.6 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|294494923|ref|YP_003541416.1| - 0.0001 22.3 0.2 0.00015 21.8 0.1 1.2 1 0 0 1 1 1 1 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|294494923|ref|YP_003541416.1| - 0.00013 21.1 0.1 0.0002 20.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|294494923|ref|YP_003541416.1| - 0.00058 19.7 0.0 0.0009 19.1 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.17 gi|294494923|ref|YP_003541416.1| - 0.003 18.0 0.1 0.005 17.3 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold THF_DHG_CYH_C PF02882.14 gi|294494923|ref|YP_003541416.1| - 0.0041 16.1 0.0 0.34 9.9 0.0 2.2 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Saccharop_dh PF03435.13 gi|294494923|ref|YP_003541416.1| - 0.0045 16.0 0.1 0.0059 15.6 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|294494923|ref|YP_003541416.1| - 0.0084 15.7 0.1 0.015 14.9 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|294494923|ref|YP_003541416.1| - 0.014 15.0 0.5 0.052 13.2 0.2 2.1 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.1 gi|294494923|ref|YP_003541416.1| - 0.024 14.8 0.1 0.038 14.2 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding IlvN PF07991.7 gi|294494923|ref|YP_003541416.1| - 0.063 12.6 0.0 0.095 12.0 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain DUF1118 PF06549.7 gi|294494923|ref|YP_003541416.1| - 0.099 12.7 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1118) DHquinase_I PF01487.10 gi|294494924|ref|YP_003541417.1| - 3.1e-56 190.5 0.0 3.4e-56 190.4 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase DHQS PF01959.11 gi|294494925|ref|YP_003541418.1| - 6.4e-154 511.9 6.8 7.2e-154 511.7 4.7 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) DUF2577 PF10844.3 gi|294494925|ref|YP_003541418.1| - 0.0051 16.8 0.2 2.2 8.3 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF2577) OapA PF04225.7 gi|294494925|ref|YP_003541418.1| - 0.0056 16.5 0.2 1 9.3 0.0 2.5 1 1 1 2 2 2 1 Opacity-associated protein A LysM-like domain UPF0086 PF01868.11 gi|294494925|ref|YP_003541418.1| - 0.0074 15.9 0.5 0.048 13.2 0.3 2.1 2 0 0 2 2 2 1 Domain of unknown function UPF0086 Borrelia_P83 PF05262.6 gi|294494925|ref|YP_003541418.1| - 0.0084 14.4 0.1 0.017 13.4 0.1 1.4 1 0 0 1 1 1 1 Borrelia P83/100 protein QRPTase_C PF01729.14 gi|294494925|ref|YP_003541418.1| - 0.018 14.5 0.4 0.049 13.1 0.0 1.9 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain DUF137 PF02006.11 gi|294494925|ref|YP_003541418.1| - 0.15 11.3 3.1 4.7 6.5 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function DUF137 DeoC PF01791.4 gi|294494926|ref|YP_003541419.1| - 1.9e-58 197.5 0.0 2.3e-58 197.2 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase Peptidase_M20 PF01546.23 gi|294494926|ref|YP_003541419.1| - 0.00038 20.0 0.2 0.00052 19.5 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Dus PF01207.12 gi|294494926|ref|YP_003541419.1| - 0.00092 18.1 1.4 0.1 11.4 0.1 2.9 2 1 1 3 3 3 2 Dihydrouridine synthase (Dus) PucR PF07905.6 gi|294494926|ref|YP_003541419.1| - 0.11 12.0 0.0 0.69 9.4 0.0 2.1 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family DUF2875 PF11394.3 gi|294494926|ref|YP_003541419.1| - 0.12 10.9 0.0 4.4 5.7 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2875) GATase PF00117.23 gi|294494927|ref|YP_003541420.1| - 2.4e-36 125.0 0.0 2.7e-36 124.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|294494927|ref|YP_003541420.1| - 2.3e-13 50.1 0.0 1.7e-12 47.2 0.0 2.2 2 1 0 2 2 2 1 Peptidase C26 AP_endonuc_2 PF01261.19 gi|294494928|ref|YP_003541421.1| - 5.4e-16 58.5 0.0 6.6e-16 58.2 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel YdjC PF04794.7 gi|294494928|ref|YP_003541421.1| - 0.02 14.3 0.0 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 YdjC-like protein RHH_1 PF01402.16 gi|294494928|ref|YP_003541421.1| - 0.13 12.1 0.2 0.65 9.9 0.0 2.3 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family DUF4351 PF14261.1 gi|294494929|ref|YP_003541422.1| - 0.089 12.6 0.1 1.5 8.7 0.0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4351) MarR PF01047.17 gi|294494930|ref|YP_003541423.1| - 1.2e-16 60.1 0.0 2.3e-16 59.2 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|294494930|ref|YP_003541423.1| - 1.9e-16 59.4 0.1 3.3e-16 58.7 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|294494930|ref|YP_003541423.1| - 1.1e-10 41.6 0.0 2.1e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|294494930|ref|YP_003541423.1| - 2.8e-07 30.1 0.1 6.4e-06 25.7 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|294494930|ref|YP_003541423.1| - 3.5e-06 26.8 0.0 7.2e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|294494930|ref|YP_003541423.1| - 7.5e-06 25.8 0.0 1.2e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|294494930|ref|YP_003541423.1| - 2.7e-05 23.6 0.6 6e-05 22.5 0.1 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|294494930|ref|YP_003541423.1| - 4.8e-05 23.0 0.2 0.00012 21.7 0.0 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HxlR PF01638.12 gi|294494930|ref|YP_003541423.1| - 0.00011 21.6 0.1 0.00019 21.0 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_24 PF13412.1 gi|294494930|ref|YP_003541423.1| - 0.00015 21.0 0.0 0.0003 20.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|294494930|ref|YP_003541423.1| - 0.0002 20.9 0.1 0.00052 19.6 0.0 1.8 2 0 0 2 2 1 1 HTH domain GntR PF00392.16 gi|294494930|ref|YP_003541423.1| - 0.00026 20.3 0.1 0.0005 19.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.1 gi|294494930|ref|YP_003541423.1| - 0.0003 20.8 0.3 0.00041 20.4 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn helix Replic_Relax PF13814.1 gi|294494930|ref|YP_003541423.1| - 0.00057 19.7 0.2 0.00069 19.5 0.1 1.1 1 0 0 1 1 1 1 Replication-relaxation HTH_23 PF13384.1 gi|294494930|ref|YP_003541423.1| - 0.00065 19.2 0.2 0.0056 16.2 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_20 PF12840.2 gi|294494930|ref|YP_003541423.1| - 0.00099 18.8 0.1 0.0023 17.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain PAX PF00292.13 gi|294494930|ref|YP_003541423.1| - 0.0028 17.3 0.0 0.041 13.5 0.0 2.1 1 1 1 2 2 2 1 'Paired box' domain HTH_5 PF01022.15 gi|294494930|ref|YP_003541423.1| - 0.012 15.2 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|294494930|ref|YP_003541423.1| - 0.02 14.8 0.3 0.044 13.7 0.0 1.8 2 1 0 2 2 1 0 Helix-turn-helix domain PadR PF03551.9 gi|294494930|ref|YP_003541423.1| - 0.041 13.6 0.1 0.071 12.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF4423 PF14394.1 gi|294494930|ref|YP_003541423.1| - 0.07 12.6 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Rrf2 PF02082.15 gi|294494930|ref|YP_003541423.1| - 0.084 12.9 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_36 PF13730.1 gi|294494930|ref|YP_003541423.1| - 0.09 12.9 0.0 0.2 11.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|294494930|ref|YP_003541423.1| - 0.1 12.7 0.1 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor MatE PF01554.13 gi|294494931|ref|YP_003541424.1| - 6.9e-56 188.3 35.1 1.7e-28 99.2 7.3 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|294494931|ref|YP_003541424.1| - 1.1e-14 54.5 15.7 4.7e-11 42.6 3.7 4.8 3 2 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Rad51 PF08423.6 gi|294494932|ref|YP_003541425.1| - 6.9e-91 303.6 0.0 8.4e-91 303.4 0.0 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.1 gi|294494932|ref|YP_003541425.1| - 4.9e-12 45.8 0.3 1.2e-11 44.5 0.2 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|294494932|ref|YP_003541425.1| - 1.7e-11 43.9 0.0 2.5e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|294494932|ref|YP_003541425.1| - 4.2e-10 39.1 0.1 1.2e-07 31.1 0.1 2.3 1 1 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|294494932|ref|YP_003541425.1| - 2.4e-09 36.6 0.1 3.4e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 KaiC HHH_2 PF12826.2 gi|294494932|ref|YP_003541425.1| - 2.8e-06 27.1 0.3 7.6e-06 25.7 0.2 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|294494932|ref|YP_003541425.1| - 0.00065 19.5 0.0 0.0019 18.1 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus HHH PF00633.18 gi|294494932|ref|YP_003541425.1| - 0.001 18.6 0.6 0.067 12.9 0.3 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif CobU PF02283.11 gi|294494932|ref|YP_003541425.1| - 0.0084 15.5 0.1 0.084 12.2 0.1 2.2 1 1 0 1 1 1 1 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA PF00004.24 gi|294494932|ref|YP_003541425.1| - 0.0096 16.1 0.1 0.047 13.8 0.1 2.2 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|294494932|ref|YP_003541425.1| - 0.028 13.9 0.0 0.084 12.3 0.0 1.7 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.1 gi|294494932|ref|YP_003541425.1| - 0.034 14.3 0.1 0.086 12.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|294494932|ref|YP_003541425.1| - 0.057 13.1 0.0 0.08 12.6 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase DNA_pol_lambd_f PF10391.4 gi|294494932|ref|YP_003541425.1| - 0.076 12.5 0.0 0.3 10.6 0.0 2.0 1 1 0 1 1 1 0 Fingers domain of DNA polymerase lambda PhoH PF02562.11 gi|294494932|ref|YP_003541425.1| - 0.1 11.7 0.1 0.3 10.3 0.0 1.7 1 1 1 2 2 2 0 PhoH-like protein DUF2075 PF09848.4 gi|294494932|ref|YP_003541425.1| - 0.11 11.4 0.1 0.14 11.0 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.7 gi|294494932|ref|YP_003541425.1| - 0.16 11.0 0.4 4.4 6.3 0.1 2.7 2 1 0 2 2 2 0 Zeta toxin Hydrolase_3 PF08282.7 gi|294494933|ref|YP_003541426.1| - 6.9e-30 104.4 1.7 1.7e-20 73.6 0.3 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|294494933|ref|YP_003541426.1| - 1.2e-07 32.1 0.7 2.5e-06 27.8 0.0 2.2 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|294494933|ref|YP_003541426.1| - 5.4e-07 29.1 0.0 3.5e-06 26.4 0.0 1.9 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|294494933|ref|YP_003541426.1| - 9.8e-06 26.1 1.0 0.013 15.9 0.1 2.9 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|294494933|ref|YP_003541426.1| - 0.0051 15.7 0.1 0.009 14.9 0.0 1.4 1 0 0 1 1 1 1 Trehalose-phosphatase PRC PF05239.11 gi|294494934|ref|YP_003541427.1| - 3.1e-11 42.9 0.8 4.1e-11 42.6 0.6 1.1 1 0 0 1 1 1 1 PRC-barrel domain AAA PF00004.24 gi|294494935|ref|YP_003541428.1| - 1.1e-100 333.0 0.0 3.5e-49 166.3 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|294494935|ref|YP_003541428.1| - 6.8e-27 93.2 0.1 2.7e-26 91.3 0.0 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|294494935|ref|YP_003541428.1| - 1.6e-14 54.1 0.0 4e-06 26.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.12 gi|294494935|ref|YP_003541428.1| - 6e-14 51.4 0.3 5.5e-13 48.3 0.2 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|294494935|ref|YP_003541428.1| - 1.1e-13 50.7 0.0 1.7e-05 24.0 0.0 2.6 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|294494935|ref|YP_003541428.1| - 3.9e-13 49.6 0.3 0.00026 21.1 0.1 4.1 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|294494935|ref|YP_003541428.1| - 4.4e-13 49.6 0.2 8e-05 22.7 0.0 3.5 3 2 0 3 3 3 2 AAA ATPase domain AAA_5 PF07728.9 gi|294494935|ref|YP_003541428.1| - 8.2e-13 48.2 1.1 4.6e-05 23.1 0.1 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|294494935|ref|YP_003541428.1| - 3.8e-12 47.0 0.0 0.00018 22.3 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|294494935|ref|YP_003541428.1| - 5.3e-10 39.2 0.0 0.0011 18.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|294494935|ref|YP_003541428.1| - 5.1e-09 35.7 0.1 0.0012 18.2 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_33 PF13671.1 gi|294494935|ref|YP_003541428.1| - 7e-09 35.6 0.0 0.0045 16.8 0.0 2.7 2 1 0 3 3 2 2 AAA domain AAA_19 PF13245.1 gi|294494935|ref|YP_003541428.1| - 8.7e-09 35.0 1.3 0.0059 16.3 0.0 3.2 3 0 0 3 3 3 2 Part of AAA domain TIP49 PF06068.8 gi|294494935|ref|YP_003541428.1| - 9.3e-09 34.4 0.0 0.00045 19.0 0.0 2.7 2 0 0 2 2 2 2 TIP49 C-terminus AAA_18 PF13238.1 gi|294494935|ref|YP_003541428.1| - 1.9e-08 34.6 0.0 0.0038 17.5 0.0 2.9 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|294494935|ref|YP_003541428.1| - 4.9e-08 32.3 0.1 0.0066 15.5 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_28 PF13521.1 gi|294494935|ref|YP_003541428.1| - 2.8e-07 30.6 0.0 0.024 14.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|294494935|ref|YP_003541428.1| - 3e-07 30.5 0.0 0.0039 17.3 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Sigma54_activat PF00158.21 gi|294494935|ref|YP_003541428.1| - 7.1e-07 28.8 0.1 0.054 12.9 0.0 3.8 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_25 PF13481.1 gi|294494935|ref|YP_003541428.1| - 9.1e-07 28.4 1.3 0.085 12.2 0.0 3.6 2 1 1 3 3 3 2 AAA domain Arch_ATPase PF01637.13 gi|294494935|ref|YP_003541428.1| - 9.5e-07 28.7 0.2 0.43 10.2 0.0 4.1 2 2 2 4 4 4 2 Archaeal ATPase Mg_chelatase PF01078.16 gi|294494935|ref|YP_003541428.1| - 1.2e-06 27.8 0.2 0.032 13.3 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|294494935|ref|YP_003541428.1| - 1.3e-05 24.9 0.2 0.1 12.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain PhoH PF02562.11 gi|294494935|ref|YP_003541428.1| - 1.6e-05 24.2 0.0 0.18 10.9 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein KaiC PF06745.8 gi|294494935|ref|YP_003541428.1| - 1.6e-05 24.1 0.6 0.035 13.2 0.0 3.3 2 1 1 3 3 3 1 KaiC Sigma54_activ_2 PF14532.1 gi|294494935|ref|YP_003541428.1| - 2e-05 24.6 0.0 0.1 12.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain Bac_DnaA PF00308.13 gi|294494935|ref|YP_003541428.1| - 2e-05 24.3 0.0 0.16 11.6 0.0 2.8 2 1 0 2 2 2 2 Bacterial dnaA protein AAA_3 PF07726.6 gi|294494935|ref|YP_003541428.1| - 3.3e-05 23.5 0.0 0.12 11.9 0.0 2.9 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.12 gi|294494935|ref|YP_003541428.1| - 4e-05 22.6 0.1 0.18 10.6 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NACHT PF05729.7 gi|294494935|ref|YP_003541428.1| - 5.4e-05 22.9 0.0 0.28 10.8 0.0 3.4 3 0 0 3 3 3 1 NACHT domain DUF2075 PF09848.4 gi|294494935|ref|YP_003541428.1| - 6.5e-05 22.0 0.0 0.14 11.1 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.22 gi|294494935|ref|YP_003541428.1| - 0.00015 22.0 0.0 0.73 10.1 0.0 2.7 2 0 0 2 2 2 2 ABC transporter ATP-synt_ab PF00006.20 gi|294494935|ref|YP_003541428.1| - 0.00019 21.0 0.0 0.094 12.2 0.0 2.5 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain NTPase_1 PF03266.10 gi|294494935|ref|YP_003541428.1| - 0.0002 21.1 1.3 0.59 9.8 0.0 4.1 3 1 1 4 4 4 1 NTPase NB-ARC PF00931.17 gi|294494935|ref|YP_003541428.1| - 0.00023 20.1 0.0 0.24 10.2 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain DUF815 PF05673.8 gi|294494935|ref|YP_003541428.1| - 0.00089 18.2 0.0 0.83 8.5 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Vps4_C PF09336.5 gi|294494935|ref|YP_003541428.1| - 0.00099 18.9 0.4 0.099 12.5 0.0 2.7 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_11 PF13086.1 gi|294494935|ref|YP_003541428.1| - 0.0014 18.2 0.0 1.8 8.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain T2SE PF00437.15 gi|294494935|ref|YP_003541428.1| - 0.002 17.1 0.0 1.8 7.4 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_30 PF13604.1 gi|294494935|ref|YP_003541428.1| - 0.0023 17.5 0.0 2.9 7.4 0.0 2.7 2 0 0 2 2 2 1 AAA domain KAP_NTPase PF07693.9 gi|294494935|ref|YP_003541428.1| - 0.0038 16.2 0.1 1.3 7.9 0.0 2.7 2 1 0 3 3 3 1 KAP family P-loop domain SKI PF01202.17 gi|294494935|ref|YP_003541428.1| - 0.0059 16.4 0.0 3.4 7.5 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase UPF0079 PF02367.12 gi|294494935|ref|YP_003541428.1| - 0.0078 15.8 0.1 3.6 7.2 0.0 2.8 3 0 0 3 3 2 0 Uncharacterised P-loop hydrolase UPF0079 DAP3 PF10236.4 gi|294494935|ref|YP_003541428.1| - 0.022 13.7 0.0 3.1 6.6 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 ResIII PF04851.10 gi|294494935|ref|YP_003541428.1| - 0.023 14.5 0.0 5.9 6.6 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit IPT PF01745.11 gi|294494935|ref|YP_003541428.1| - 0.039 13.1 0.1 2.1 7.4 0.0 2.7 2 0 0 2 2 2 0 Isopentenyl transferase AAA_23 PF13476.1 gi|294494935|ref|YP_003541428.1| - 0.057 13.7 0.2 13 6.0 0.0 3.0 3 0 0 3 3 3 0 AAA domain KTI12 PF08433.5 gi|294494935|ref|YP_003541428.1| - 0.058 12.5 0.0 8.1 5.5 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Guanylate_kin PF00625.16 gi|294494935|ref|YP_003541428.1| - 0.067 12.6 0.2 26 4.2 0.0 3.9 2 2 2 4 4 4 0 Guanylate kinase CPT PF07931.7 gi|294494935|ref|YP_003541428.1| - 0.084 12.4 0.0 11 5.6 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein TRAM PF01938.15 gi|294494936|ref|YP_003541429.1| - 4.7e-16 58.3 1.5 5.2e-16 58.1 1.0 1.0 1 0 0 1 1 1 1 TRAM domain Spore_coat_CotO PF14153.1 gi|294494937|ref|YP_003541430.1| - 0.059 12.8 0.0 0.074 12.4 0.0 1.1 1 0 0 1 1 1 0 Spore coat protein CotO PAP2 PF01569.16 gi|294494938|ref|YP_003541431.1| - 2.3e-13 49.9 12.5 2.3e-13 49.9 8.7 2.8 2 2 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|294494938|ref|YP_003541431.1| - 1e-08 34.9 12.2 1e-08 34.9 8.4 2.2 1 1 0 2 2 2 1 PAP2 superfamily NinF PF05810.7 gi|294494938|ref|YP_003541431.1| - 0.013 15.3 0.1 0.024 14.4 0.1 1.4 1 0 0 1 1 1 0 NinF protein Prok-RING_1 PF14446.1 gi|294494938|ref|YP_003541431.1| - 0.076 12.7 0.6 0.13 12.0 0.4 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 UPF0104 PF03706.8 gi|294494939|ref|YP_003541432.1| - 5.4e-40 137.5 24.8 6.8e-40 137.1 17.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Pox_A14 PF05767.7 gi|294494939|ref|YP_003541432.1| - 1.4 8.9 9.1 3.4 7.6 0.1 3.2 3 0 0 3 3 3 0 Poxvirus virion envelope protein A14 Glyco_trans_1_3 PF13528.1 gi|294494940|ref|YP_003541433.1| - 2.8e-33 115.4 0.0 3.3e-32 111.9 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.11 gi|294494940|ref|YP_003541433.1| - 4.3e-13 49.2 0.0 6.6e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain UDPGT PF00201.13 gi|294494940|ref|YP_003541433.1| - 1e-06 27.6 0.0 2.5e-06 26.3 0.0 1.6 2 0 0 2 2 2 1 UDP-glucoronosyl and UDP-glucosyl transferase Glyco_trans_1_4 PF13692.1 gi|294494940|ref|YP_003541433.1| - 1e-06 28.9 0.0 2.2e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_28 PF03033.15 gi|294494940|ref|YP_003541433.1| - 1.2e-05 25.1 0.0 4.7e-05 23.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_4_2 PF13477.1 gi|294494940|ref|YP_003541433.1| - 9.4e-05 22.2 0.0 0.0002 21.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|294494940|ref|YP_003541433.1| - 0.00027 21.0 0.0 0.00057 20.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|294494940|ref|YP_003541433.1| - 0.0028 17.4 0.0 0.37 10.4 0.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase Family 4 YjeF_N PF03853.10 gi|294494940|ref|YP_003541433.1| - 0.051 13.1 0.1 0.096 12.2 0.1 1.4 1 0 0 1 1 1 0 YjeF-related protein N-terminus NikR_C PF08753.6 gi|294494941|ref|YP_003541434.1| - 4.8e-08 32.7 0.0 5.1e-08 32.7 0.0 1.0 1 0 0 1 1 1 1 NikR C terminal nickel binding domain NikR_C PF08753.6 gi|294494942|ref|YP_003541435.1| - 2.8e-10 39.9 0.1 4.7e-10 39.2 0.1 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|294494942|ref|YP_003541435.1| - 1.1e-07 31.3 0.0 1.7e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family SAICAR_synt PF01259.13 gi|294494943|ref|YP_003541436.1| - 2.4e-55 187.3 0.1 2.8e-55 187.1 0.1 1.0 1 0 0 1 1 1 1 SAICAR synthetase IMP_cyclohyd PF07826.6 gi|294494943|ref|YP_003541436.1| - 0.0033 16.7 0.0 0.0062 15.9 0.0 1.4 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein DUF650 PF04894.7 gi|294494944|ref|YP_003541437.1| - 1.5e-99 332.9 0.0 1.8e-99 332.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|294494944|ref|YP_003541437.1| - 4.9e-39 132.3 0.0 8.3e-39 131.6 0.0 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) HTH_3 PF01381.17 gi|294494945|ref|YP_003541438.1| - 1.9e-05 24.3 0.1 3.1e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|294494945|ref|YP_003541438.1| - 0.00012 22.1 0.0 0.00018 21.6 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|294494945|ref|YP_003541438.1| - 0.00071 19.7 0.0 0.0012 18.9 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.11 gi|294494945|ref|YP_003541438.1| - 0.00083 18.6 0.1 0.0017 17.6 0.0 1.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_37 PF13744.1 gi|294494945|ref|YP_003541438.1| - 0.0011 18.7 0.0 0.0017 18.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|294494945|ref|YP_003541438.1| - 0.0037 16.8 0.1 0.011 15.3 0.0 1.8 2 1 0 2 2 2 1 Homeodomain-like domain HTH_19 PF12844.2 gi|294494945|ref|YP_003541438.1| - 0.0047 16.9 0.0 0.012 15.6 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|294494945|ref|YP_003541438.1| - 0.0051 16.1 0.1 0.0099 15.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_17 PF12728.2 gi|294494945|ref|YP_003541438.1| - 0.006 16.8 0.0 0.011 16.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|294494945|ref|YP_003541438.1| - 0.0081 15.9 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|294494945|ref|YP_003541438.1| - 0.0081 15.8 0.1 0.014 15.0 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_Tnp_1_2 PF13022.1 gi|294494945|ref|YP_003541438.1| - 0.015 15.0 0.1 0.027 14.2 0.1 1.4 1 1 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_5 PF01022.15 gi|294494945|ref|YP_003541438.1| - 0.033 13.8 0.3 0.45 10.2 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|294494945|ref|YP_003541438.1| - 0.058 13.4 0.2 0.15 12.0 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_8 PF02954.14 gi|294494945|ref|YP_003541438.1| - 0.071 12.6 0.1 0.12 11.8 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family SUI1 PF01253.17 gi|294494946|ref|YP_003541439.1| - 3.6e-23 81.1 0.1 4.4e-23 80.8 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.10 gi|294494946|ref|YP_003541439.1| - 0.49 9.5 1.9 0.65 9.1 1.3 1.1 1 0 0 1 1 1 0 DTW domain DUF192 PF02643.10 gi|294494947|ref|YP_003541440.1| - 3.2e-21 75.0 0.0 3.6e-21 74.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 AIRS_C PF02769.17 gi|294494948|ref|YP_003541441.1| - 4.1e-44 150.2 5.1 5.1e-28 98.0 0.3 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|294494948|ref|YP_003541441.1| - 3.9e-40 136.0 1.2 1.8e-23 82.5 0.0 3.5 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain Aminotran_5 PF00266.14 gi|294494949|ref|YP_003541442.1| - 6.9e-122 406.7 0.0 7.9e-122 406.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|294494949|ref|YP_003541442.1| - 3.6e-07 29.5 0.0 5.4e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|294494949|ref|YP_003541442.1| - 6e-06 24.7 0.0 8.3e-06 24.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|294494949|ref|YP_003541442.1| - 0.0004 19.6 0.0 0.00061 19.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase YcaO PF02624.11 gi|294494951|ref|YP_003541444.1| - 1.7e-81 274.3 0.1 2e-81 274.0 0.1 1.1 1 0 0 1 1 1 1 YcaO-like family DUF1877 PF08974.5 gi|294494951|ref|YP_003541444.1| - 0.099 12.2 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1877) TfuA PF07812.7 gi|294494952|ref|YP_003541445.1| - 1e-44 150.8 0.1 2.4e-44 149.5 0.0 1.7 2 0 0 2 2 2 1 TfuA-like protein Fe_dep_repress PF01325.14 gi|294494953|ref|YP_003541446.1| - 2.1e-12 46.8 0.2 3e-12 46.2 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|294494953|ref|YP_003541446.1| - 8.1e-12 44.6 0.0 1.6e-11 43.7 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.2 gi|294494953|ref|YP_003541446.1| - 3.4e-07 29.8 0.0 7.1e-07 28.8 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|294494953|ref|YP_003541446.1| - 8.8e-06 25.3 0.0 1.3e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|294494953|ref|YP_003541446.1| - 0.00016 21.9 0.0 0.00023 21.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|294494953|ref|YP_003541446.1| - 0.0002 20.6 0.1 0.011 15.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Topoisom_bac PF01131.15 gi|294494953|ref|YP_003541446.1| - 0.00085 18.2 0.1 0.00096 18.0 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Rrf2 PF02082.15 gi|294494953|ref|YP_003541446.1| - 0.0012 18.9 0.0 0.0016 18.4 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.5 gi|294494953|ref|YP_003541446.1| - 0.0012 18.3 0.0 0.0021 17.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|294494953|ref|YP_003541446.1| - 0.0022 17.5 0.0 1.3 8.7 0.0 2.2 2 0 0 2 2 2 2 Homeodomain-like domain TrmB PF01978.14 gi|294494953|ref|YP_003541446.1| - 0.0043 16.7 0.2 0.012 15.2 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|294494953|ref|YP_003541446.1| - 0.006 16.0 0.1 0.014 14.8 0.0 1.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain FeoC PF09012.5 gi|294494953|ref|YP_003541446.1| - 0.013 15.2 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator GntR PF00392.16 gi|294494953|ref|YP_003541446.1| - 0.013 14.9 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|294494953|ref|YP_003541446.1| - 0.014 15.1 0.0 0.039 13.7 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Rio2_N PF09202.6 gi|294494953|ref|YP_003541446.1| - 0.017 15.1 0.1 0.042 13.9 0.1 1.7 2 0 0 2 2 2 0 Rio2, N-terminal HTH_45 PF14947.1 gi|294494953|ref|YP_003541446.1| - 0.017 14.8 0.1 0.027 14.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DDRGK PF09756.4 gi|294494953|ref|YP_003541446.1| - 0.02 14.3 0.0 0.029 13.7 0.0 1.2 1 0 0 1 1 1 0 DDRGK domain HTH_Crp_2 PF13545.1 gi|294494953|ref|YP_003541446.1| - 0.025 14.3 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|294494953|ref|YP_003541446.1| - 0.041 13.5 0.1 0.087 12.4 0.0 1.6 2 0 0 2 2 2 0 HTH domain HTH_5 PF01022.15 gi|294494953|ref|YP_003541446.1| - 0.064 12.9 0.1 0.24 11.0 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_12 PF08461.5 gi|294494953|ref|YP_003541446.1| - 0.068 12.9 0.1 0.28 10.9 0.1 2.0 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain DUF4010 PF13194.1 gi|294494954|ref|YP_003541447.1| - 1.1e-45 155.5 19.6 1.1e-45 155.5 13.6 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|294494954|ref|YP_003541447.1| - 7.4e-15 54.9 9.3 7.4e-15 54.9 6.4 3.2 3 0 0 3 3 3 1 MgtC family Rubrerythrin PF02915.12 gi|294494955|ref|YP_003541448.1| - 2.4e-07 31.1 2.5 2.7e-07 31.0 1.7 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|294494955|ref|YP_003541448.1| - 5.8e-06 26.5 0.3 7.4e-06 26.1 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin_2 PF13668.1 gi|294494955|ref|YP_003541448.1| - 0.0074 16.2 0.1 0.0087 16.0 0.1 1.1 1 0 0 1 1 1 1 Ferritin-like domain COQ7 PF03232.8 gi|294494955|ref|YP_003541448.1| - 0.0076 15.7 0.2 0.0098 15.3 0.2 1.2 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 DUF2202 PF09968.4 gi|294494955|ref|YP_003541448.1| - 0.019 14.6 0.2 0.028 14.0 0.1 1.4 1 1 0 1 1 1 0 Uncharacterized protein domain (DUF2202) DUF3231 PF11553.3 gi|294494955|ref|YP_003541448.1| - 0.034 13.6 0.1 0.038 13.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) DUF305 PF03713.8 gi|294494955|ref|YP_003541448.1| - 0.043 13.6 0.1 0.054 13.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF305) DUF4142 PF13628.1 gi|294494955|ref|YP_003541448.1| - 0.073 13.0 0.0 0.099 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4142) Lactamase_B PF00753.22 gi|294494956|ref|YP_003541449.1| - 8.3e-15 54.9 0.1 9.7e-15 54.7 0.0 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|294494956|ref|YP_003541449.1| - 5.2e-10 39.1 0.1 5.6e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|294494956|ref|YP_003541449.1| - 0.015 15.0 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain DUF1847 PF08901.6 gi|294494957|ref|YP_003541450.1| - 1.2e-55 187.3 3.6 1.3e-55 187.1 2.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1847) CbiA PF01656.18 gi|294494958|ref|YP_003541451.1| - 1.3e-31 109.5 0.0 1.6e-31 109.2 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|294494958|ref|YP_003541451.1| - 7.3e-14 50.6 16.6 6.9e-08 31.7 2.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294494958|ref|YP_003541451.1| - 4.9e-10 39.6 19.4 1.9e-07 31.3 7.8 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294494958|ref|YP_003541451.1| - 2.8e-09 36.4 14.5 3.6e-05 23.4 1.6 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|294494958|ref|YP_003541451.1| - 2e-08 33.6 13.7 6e-05 22.7 2.5 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|294494958|ref|YP_003541451.1| - 2.4e-08 33.6 8.8 7.4e-08 32.0 6.1 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294494958|ref|YP_003541451.1| - 3.2e-08 33.6 7.0 0.0017 18.5 1.0 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294494958|ref|YP_003541451.1| - 1.6e-07 31.9 6.9 0.0037 17.9 0.7 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain ParA PF10609.4 gi|294494958|ref|YP_003541451.1| - 6.2e-07 29.2 0.5 2e-06 27.5 0.3 2.0 1 1 0 1 1 1 1 ParA/MinD ATPase like AAA_19 PF13245.1 gi|294494958|ref|YP_003541451.1| - 6.2e-06 25.8 0.6 0.04 13.6 0.0 2.4 2 0 0 2 2 2 2 Part of AAA domain Fer4_4 PF12800.2 gi|294494958|ref|YP_003541451.1| - 1.3e-05 25.1 12.0 0.024 14.9 1.6 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_NifH PF00142.13 gi|294494958|ref|YP_003541451.1| - 6.5e-05 22.2 3.1 0.015 14.5 0.1 2.6 2 1 1 3 3 3 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_21 PF14697.1 gi|294494958|ref|YP_003541451.1| - 0.00012 21.8 12.3 0.002 17.9 8.7 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain GTP_EFTU PF00009.22 gi|294494958|ref|YP_003541451.1| - 0.0003 20.2 0.9 0.0037 16.7 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Fer4_3 PF12798.2 gi|294494958|ref|YP_003541451.1| - 0.0005 20.4 19.6 0.12 13.0 4.9 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_25 PF13481.1 gi|294494958|ref|YP_003541451.1| - 0.0012 18.2 1.1 0.011 15.1 0.1 2.4 2 1 1 3 3 3 1 AAA domain Fer4_8 PF13183.1 gi|294494958|ref|YP_003541451.1| - 0.0012 18.7 11.9 0.089 12.8 0.6 2.6 2 1 2 4 4 3 3 4Fe-4S dicluster domain PhoH PF02562.11 gi|294494958|ref|YP_003541451.1| - 0.0014 17.9 0.6 0.42 9.8 0.2 2.2 2 0 0 2 2 2 1 PhoH-like protein AAA_22 PF13401.1 gi|294494958|ref|YP_003541451.1| - 0.0031 17.6 0.0 0.1 12.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|294494958|ref|YP_003541451.1| - 0.004 16.1 0.6 0.31 9.9 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) GFO_IDH_MocA PF01408.17 gi|294494958|ref|YP_003541451.1| - 0.0056 17.2 0.0 0.06 13.8 0.0 2.1 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold IstB_IS21 PF01695.12 gi|294494958|ref|YP_003541451.1| - 0.013 14.8 0.1 2.8 7.3 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.1 gi|294494958|ref|YP_003541451.1| - 0.016 14.7 0.2 0.23 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|294494958|ref|YP_003541451.1| - 0.018 15.8 2.7 1.3 9.8 0.0 2.7 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|294494958|ref|YP_003541451.1| - 0.019 14.9 0.1 0.085 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain FTHFS PF01268.14 gi|294494958|ref|YP_003541451.1| - 0.019 12.9 0.0 0.027 12.4 0.0 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase ArsA_ATPase PF02374.10 gi|294494958|ref|YP_003541451.1| - 0.02 13.9 3.2 0.038 13.0 0.6 2.2 2 1 1 3 3 3 0 Anion-transporting ATPase Fer4_17 PF13534.1 gi|294494958|ref|YP_003541451.1| - 0.035 14.4 12.7 0.47 10.8 1.5 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain ABC_tran PF00005.22 gi|294494958|ref|YP_003541451.1| - 0.04 14.2 0.4 0.47 10.7 0.0 2.2 2 1 0 2 2 2 0 ABC transporter ATP_bind_1 PF03029.12 gi|294494958|ref|YP_003541451.1| - 0.043 13.3 0.1 2.3 7.6 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.1 gi|294494958|ref|YP_003541451.1| - 0.044 13.3 1.0 0.22 11.1 0.1 2.2 2 1 1 3 3 3 0 AAA domain Fer4_15 PF13459.1 gi|294494958|ref|YP_003541451.1| - 0.047 14.2 15.8 0.14 12.7 1.9 3.1 2 1 1 3 3 2 0 4Fe-4S single cluster domain NB-ARC PF00931.17 gi|294494958|ref|YP_003541451.1| - 0.05 12.4 0.5 1.2 7.9 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.7 gi|294494958|ref|YP_003541451.1| - 0.072 12.7 0.0 0.29 10.7 0.0 1.9 2 0 0 2 2 2 0 NACHT domain Fer4_18 PF13746.1 gi|294494958|ref|YP_003541451.1| - 0.081 13.3 12.1 1.7 9.1 1.9 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain AAA_13 PF13166.1 gi|294494958|ref|YP_003541451.1| - 0.089 11.2 0.0 0.12 10.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|294494958|ref|YP_003541451.1| - 0.096 11.7 0.9 0.36 9.9 0.2 2.1 2 0 0 2 2 2 0 KaiC AAA_18 PF13238.1 gi|294494958|ref|YP_003541451.1| - 0.15 12.3 1.1 4.2 7.6 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|294494958|ref|YP_003541451.1| - 0.23 11.7 1.1 0.46 10.7 0.8 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|294494958|ref|YP_003541451.1| - 0.24 11.3 1.8 0.37 10.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|294494958|ref|YP_003541451.1| - 0.25 11.5 1.2 3.7 7.7 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|294494958|ref|YP_003541451.1| - 0.6 9.6 2.0 1.1 8.8 0.6 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain T2SE PF00437.15 gi|294494958|ref|YP_003541451.1| - 0.65 8.8 2.5 0.53 9.1 0.2 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein CbiA PF01656.18 gi|294494959|ref|YP_003541452.1| - 2.7e-24 85.6 0.0 3.4e-24 85.3 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|294494959|ref|YP_003541452.1| - 5.4e-12 44.7 15.1 2.8e-07 29.8 1.0 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294494959|ref|YP_003541452.1| - 9.1e-11 41.1 16.6 6.6e-06 25.7 2.4 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294494959|ref|YP_003541452.1| - 1.4e-08 34.9 22.0 9.4e-07 29.1 8.0 2.5 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294494959|ref|YP_003541452.1| - 3.3e-08 33.2 8.1 7.7e-08 32.0 5.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294494959|ref|YP_003541452.1| - 1.1e-07 31.5 7.5 1.1e-07 31.5 5.2 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294494959|ref|YP_003541452.1| - 3.1e-07 31.0 6.8 0.0012 19.5 0.2 2.5 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|294494959|ref|YP_003541452.1| - 1.6e-06 28.2 11.0 0.0017 18.5 0.6 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain ParA PF10609.4 gi|294494959|ref|YP_003541452.1| - 6.6e-06 25.9 1.0 1.3e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 ParA/MinD ATPase like Fer4_2 PF12797.2 gi|294494959|ref|YP_003541452.1| - 4.1e-05 23.2 15.5 0.00071 19.3 0.9 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|294494959|ref|YP_003541452.1| - 0.00073 19.6 17.2 0.0045 17.2 2.6 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_NifH PF00142.13 gi|294494959|ref|YP_003541452.1| - 0.00077 18.7 0.0 0.071 12.2 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_15 PF13459.1 gi|294494959|ref|YP_003541452.1| - 0.00092 19.7 6.0 0.23 12.0 0.1 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain AAA_26 PF13500.1 gi|294494959|ref|YP_003541452.1| - 0.001 18.6 0.0 0.001 18.6 0.0 1.5 2 0 0 2 2 1 1 AAA domain Fer4_3 PF12798.2 gi|294494959|ref|YP_003541452.1| - 0.0022 18.4 22.4 0.0032 17.9 4.8 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|294494959|ref|YP_003541452.1| - 0.0057 16.6 12.0 0.28 11.2 2.6 2.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|294494959|ref|YP_003541452.1| - 0.013 15.7 12.2 0.13 12.6 1.4 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain AAA_25 PF13481.1 gi|294494959|ref|YP_003541452.1| - 0.014 14.8 0.0 0.024 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_31 PF13614.1 gi|294494959|ref|YP_003541452.1| - 0.024 14.5 0.0 2.7 7.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain MipZ PF09140.6 gi|294494959|ref|YP_003541452.1| - 0.026 13.5 0.0 0.041 12.9 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ AAA_19 PF13245.1 gi|294494959|ref|YP_003541452.1| - 0.043 13.5 1.2 1.7 8.4 0.5 2.5 2 0 0 2 2 2 0 Part of AAA domain DUF2075 PF09848.4 gi|294494959|ref|YP_003541452.1| - 0.069 12.1 0.0 0.089 11.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|294494959|ref|YP_003541452.1| - 0.087 12.3 0.1 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain Fer4_11 PF13247.1 gi|294494959|ref|YP_003541452.1| - 0.12 12.2 5.4 0.34 10.8 3.8 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain AAA_22 PF13401.1 gi|294494959|ref|YP_003541452.1| - 0.16 12.1 0.0 0.3 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.10 gi|294494959|ref|YP_003541452.1| - 0.18 10.8 1.3 0.4 9.6 0.9 1.6 1 0 0 1 1 1 0 Anion-transporting ATPase Fer4_18 PF13746.1 gi|294494959|ref|YP_003541452.1| - 9.5 6.7 14.3 3.1 8.2 0.4 2.6 3 0 0 3 3 2 0 4Fe-4S dicluster domain FrhB_FdhB_C PF04432.8 gi|294494960|ref|YP_003541453.1| - 6.1e-42 142.7 0.2 1.5e-41 141.4 0.2 1.7 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus NIR_SIR PF01077.17 gi|294494960|ref|YP_003541453.1| - 5.2e-26 90.8 0.3 1e-25 89.9 0.2 1.5 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain FrhB_FdhB_N PF04422.8 gi|294494960|ref|YP_003541453.1| - 6e-21 74.0 0.1 1.1e-20 73.2 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.22 gi|294494960|ref|YP_003541453.1| - 7.8e-16 56.9 37.7 1.2e-07 30.9 1.2 5.6 6 0 0 6 6 6 3 4Fe-4S binding domain NIR_SIR_ferr PF03460.12 gi|294494960|ref|YP_003541453.1| - 6.4e-13 48.1 0.0 1.5e-12 46.9 0.0 1.7 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_7 PF12838.2 gi|294494960|ref|YP_003541453.1| - 7.5e-10 39.0 34.0 6.3e-07 29.6 6.9 4.4 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294494960|ref|YP_003541453.1| - 1.1e-08 34.5 19.9 5.4e-05 22.8 1.1 5.5 6 0 0 6 6 5 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|294494960|ref|YP_003541453.1| - 2.9e-08 33.4 34.8 2.4e-06 27.2 8.1 4.0 4 1 1 5 5 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294494960|ref|YP_003541453.1| - 2.6e-07 30.7 37.0 3.2e-06 27.2 7.1 3.8 4 1 0 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294494960|ref|YP_003541453.1| - 2.2e-06 27.4 25.7 8.7e-06 25.5 5.2 3.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294494960|ref|YP_003541453.1| - 1.4e-05 25.6 26.0 0.11 13.2 0.9 5.4 5 1 0 5 5 5 3 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|294494960|ref|YP_003541453.1| - 5.5e-05 23.6 30.2 0.034 14.7 1.7 5.5 4 2 1 5 5 5 3 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|294494960|ref|YP_003541453.1| - 0.00026 20.7 2.0 0.00026 20.7 1.4 5.8 7 0 0 7 7 6 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|294494960|ref|YP_003541453.1| - 0.00063 19.7 31.4 0.0022 17.9 7.1 4.3 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294494960|ref|YP_003541453.1| - 0.073 13.5 0.5 0.073 13.5 0.4 4.9 5 1 0 5 5 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|294494960|ref|YP_003541453.1| - 0.1 12.9 0.3 0.1 12.9 0.2 5.0 4 1 3 7 7 6 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|294494960|ref|YP_003541453.1| - 0.88 9.4 17.6 0.97 9.3 0.6 3.3 3 1 0 3 3 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294494960|ref|YP_003541453.1| - 1.1 9.7 45.5 0.04 14.2 1.8 6.3 7 0 0 7 7 6 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|294494960|ref|YP_003541453.1| - 1.8 9.0 26.2 3.4 8.1 1.3 4.9 5 1 0 5 5 5 0 4Fe-4S single cluster domain Nitro_FeMo-Co PF02579.12 gi|294494961|ref|YP_003541454.1| - 7.7e-19 67.5 0.0 9.8e-19 67.2 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor IpgD PF05925.7 gi|294494961|ref|YP_003541454.1| - 0.057 11.6 0.2 0.065 11.4 0.1 1.0 1 0 0 1 1 1 0 Enterobacterial virulence protein IpgD Nitro_FeMo-Co PF02579.12 gi|294494962|ref|YP_003541455.1| - 8.3e-24 83.4 0.3 1.1e-23 83.1 0.2 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor NIF3 PF01784.13 gi|294494962|ref|YP_003541455.1| - 0.0044 16.6 0.1 0.0048 16.5 0.0 1.1 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Ribosomal_60s PF00428.14 gi|294494962|ref|YP_003541455.1| - 0.11 12.8 1.2 9 6.7 0.2 2.2 2 0 0 2 2 2 0 60s Acidic ribosomal protein URO-D PF01208.12 gi|294494963|ref|YP_003541456.1| - 1.9e-82 276.9 0.1 2.1e-82 276.8 0.1 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) NAD_binding_2 PF03446.10 gi|294494964|ref|YP_003541457.1| - 3.1e-05 23.8 0.0 5.1e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|294494964|ref|YP_003541457.1| - 4.2e-05 22.7 0.0 9.9e-05 21.5 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|294494964|ref|YP_003541457.1| - 5.2e-05 22.9 0.0 8.9e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|294494964|ref|YP_003541457.1| - 9.2e-05 22.4 0.0 0.00019 21.3 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|294494964|ref|YP_003541457.1| - 0.00035 20.7 0.0 0.00091 19.4 0.0 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|294494964|ref|YP_003541457.1| - 0.0055 17.1 0.0 0.018 15.4 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|294494964|ref|YP_003541457.1| - 0.046 13.4 0.0 0.34 10.6 0.0 2.1 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|294494964|ref|YP_003541457.1| - 0.053 12.9 0.0 0.098 12.0 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|294494964|ref|YP_003541457.1| - 0.084 12.4 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ATP-grasp_4 PF13535.1 gi|294494965|ref|YP_003541458.1| - 4e-14 52.7 0.0 7.3e-14 51.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|294494965|ref|YP_003541458.1| - 7.7e-09 35.6 0.0 1.2e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|294494965|ref|YP_003541458.1| - 1.1e-05 24.3 0.0 6.7e-05 21.7 0.0 2.1 1 1 1 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon GARS_A PF01071.14 gi|294494965|ref|YP_003541458.1| - 0.0012 18.4 0.1 0.82 9.1 0.0 2.9 2 1 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Pyr_redox PF00070.22 gi|294494965|ref|YP_003541458.1| - 0.0017 18.7 0.0 0.0033 17.8 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Dala_Dala_lig_C PF07478.8 gi|294494965|ref|YP_003541458.1| - 0.094 12.0 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus Radical_SAM PF04055.16 gi|294494966|ref|YP_003541459.1| - 5e-13 49.5 0.6 1.1e-12 48.4 0.4 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|294494966|ref|YP_003541459.1| - 6.5e-07 29.5 0.1 1.1e-06 28.7 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain His_biosynth PF00977.16 gi|294494966|ref|YP_003541459.1| - 0.00049 19.4 0.0 0.00089 18.5 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein BATS PF06968.8 gi|294494966|ref|YP_003541459.1| - 0.00052 19.8 0.0 0.0027 17.5 0.0 2.2 1 1 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Fer4_14 PF13394.1 gi|294494966|ref|YP_003541459.1| - 0.00093 19.2 0.0 0.0018 18.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF4168 PF13767.1 gi|294494966|ref|YP_003541459.1| - 0.054 14.1 0.0 0.29 11.8 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4168) Frankia_peptide PF14407.1 gi|294494966|ref|YP_003541459.1| - 0.08 12.7 1.0 4.9 6.9 0.0 2.9 3 0 0 3 3 3 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. tRNA-synt_2b PF00587.20 gi|294494967|ref|YP_003541460.1| - 7.8e-13 48.3 0.0 1.3e-12 47.6 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.15 gi|294494967|ref|YP_003541460.1| - 2.6e-12 46.4 0.0 8.6e-09 34.9 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|294494967|ref|YP_003541460.1| - 9.1e-10 37.8 0.4 1.3e-07 30.7 0.4 3.0 2 1 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA-synt_His PF13393.1 gi|294494967|ref|YP_003541460.1| - 0.045 12.8 0.0 0.27 10.2 0.0 2.0 2 0 0 2 2 2 0 Histidyl-tRNA synthetase Aminotran_1_2 PF00155.16 gi|294494968|ref|YP_003541461.1| - 5e-47 160.5 0.0 7e-47 160.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II zf-like PF04071.7 gi|294494968|ref|YP_003541461.1| - 1.5e-29 101.5 7.5 3.2e-29 100.4 5.2 1.5 1 0 0 1 1 1 1 Cysteine-rich small domain Cys_Met_Meta_PP PF01053.15 gi|294494968|ref|YP_003541461.1| - 0.025 12.8 0.0 0.032 12.5 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_MocR PF12897.2 gi|294494968|ref|YP_003541461.1| - 0.17 10.4 0.0 0.33 9.4 0.0 1.4 2 0 0 2 2 2 0 Alanine-glyoxylate amino-transferase PAS_9 PF13426.1 gi|294494969|ref|YP_003541462.1| - 2.9e-47 159.3 0.2 6.9e-20 71.3 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|294494969|ref|YP_003541462.1| - 1.3e-31 108.7 0.0 2.9e-15 56.0 0.0 3.7 3 1 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|294494969|ref|YP_003541462.1| - 9.9e-31 105.7 0.1 3.9e-30 103.8 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|294494969|ref|YP_003541462.1| - 1.2e-28 99.3 0.0 4.1e-11 42.8 0.0 3.4 3 0 0 3 3 3 3 PAS fold HisKA PF00512.20 gi|294494969|ref|YP_003541462.1| - 2.5e-21 75.4 0.1 8.8e-21 73.6 0.0 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|294494969|ref|YP_003541462.1| - 1.1e-20 72.7 0.0 2.3e-06 27.2 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|294494969|ref|YP_003541462.1| - 9e-16 57.7 0.1 1.1e-06 28.6 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_10 PF13596.1 gi|294494969|ref|YP_003541462.1| - 1.1e-06 28.8 0.0 0.0058 16.8 0.0 2.9 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.2 gi|294494969|ref|YP_003541462.1| - 0.0005 20.0 0.1 20 5.2 0.0 5.2 4 2 0 4 4 4 0 PAS fold HATPase_c_3 PF13589.1 gi|294494969|ref|YP_003541462.1| - 0.00096 18.8 0.0 0.0027 17.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1864 PF08933.6 gi|294494969|ref|YP_003541462.1| - 0.06 11.8 0.1 0.11 11.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1864) Citrate_ly_lig PF08218.6 gi|294494970|ref|YP_003541463.1| - 0.00096 18.6 0.1 0.073 12.5 0.0 2.2 1 1 1 2 2 2 2 Citrate lyase ligase C-terminal domain TrmB PF01978.14 gi|294494971|ref|YP_003541464.1| - 8.9e-18 63.7 0.1 1.4e-17 63.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|294494971|ref|YP_003541464.1| - 4.9e-05 22.8 0.0 7.7e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|294494971|ref|YP_003541464.1| - 9.7e-05 21.8 0.0 0.00099 18.6 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.17 gi|294494971|ref|YP_003541464.1| - 0.00039 20.0 0.0 0.00074 19.1 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|294494971|ref|YP_003541464.1| - 0.0015 18.1 0.0 0.0028 17.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|294494971|ref|YP_003541464.1| - 0.0071 15.9 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|294494971|ref|YP_003541464.1| - 0.017 14.4 0.1 0.031 13.6 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|294494971|ref|YP_003541464.1| - 0.08 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|294494971|ref|YP_003541464.1| - 0.095 12.2 0.1 0.13 11.7 0.1 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit MAP1B_neuraxin PF00414.12 gi|294494971|ref|YP_003541464.1| - 0.096 12.0 0.3 0.2 11.0 0.2 1.5 1 0 0 1 1 1 0 Neuraxin and MAP1B repeat HTH_27 PF13463.1 gi|294494971|ref|YP_003541464.1| - 0.1 12.9 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MFS_1 PF07690.11 gi|294494972|ref|YP_003541465.1| - 6.5e-58 196.1 63.6 6.3e-50 169.8 26.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|294494972|ref|YP_003541465.1| - 4.5e-14 51.4 24.7 5.7e-14 51.1 17.1 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.19 gi|294494972|ref|YP_003541465.1| - 7.5e-08 31.3 12.7 7.5e-08 31.3 8.8 2.4 1 1 1 2 2 2 1 Sugar (and other) transporter OATP PF03137.15 gi|294494972|ref|YP_003541465.1| - 0.18 9.8 22.3 0.057 11.4 0.7 3.1 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family NYN PF01936.13 gi|294494973|ref|YP_003541466.1| - 2.4e-30 105.7 0.0 4.6e-30 104.8 0.0 1.4 1 0 0 1 1 1 1 NYN domain OST-HTH PF12872.2 gi|294494973|ref|YP_003541466.1| - 2.3e-18 65.7 0.0 4.3e-18 64.9 0.0 1.5 1 0 0 1 1 1 1 OST-HTH/LOTUS domain Aminotran_1_2 PF00155.16 gi|294494974|ref|YP_003541467.1| - 1.7e-63 214.7 0.0 1.9e-63 214.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|294494974|ref|YP_003541467.1| - 1.2e-14 54.1 0.0 1.9e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|294494974|ref|YP_003541467.1| - 6e-09 35.1 0.0 1.4e-08 33.9 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|294494974|ref|YP_003541467.1| - 2.4e-08 33.4 0.0 4.5e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|294494974|ref|YP_003541467.1| - 7.5e-08 31.0 0.0 1.2e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme AsnC_trans_reg PF01037.16 gi|294494975|ref|YP_003541468.1| - 8.1e-15 54.2 0.1 1.7e-14 53.2 0.0 1.5 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|294494975|ref|YP_003541468.1| - 2.8e-10 39.4 0.4 9.8e-10 37.6 0.3 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|294494975|ref|YP_003541468.1| - 1.1e-09 37.6 0.4 2.1e-09 36.7 0.3 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|294494975|ref|YP_003541468.1| - 6e-05 22.7 0.1 0.00013 21.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|294494975|ref|YP_003541468.1| - 0.00012 21.5 1.5 0.00021 20.7 1.0 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_Crp_2 PF13545.1 gi|294494975|ref|YP_003541468.1| - 0.0023 17.6 0.0 0.013 15.3 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|294494975|ref|YP_003541468.1| - 0.014 15.0 0.0 0.14 11.8 0.0 2.1 2 0 0 2 2 2 0 MarR family DUF2513 PF10711.4 gi|294494975|ref|YP_003541468.1| - 0.024 14.6 1.1 0.16 12.0 0.3 2.0 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) Rrf2 PF02082.15 gi|294494975|ref|YP_003541468.1| - 0.027 14.5 0.4 0.2 11.8 0.1 2.2 2 0 0 2 2 2 0 Transcriptional regulator MarR PF01047.17 gi|294494975|ref|YP_003541468.1| - 0.043 13.5 0.1 0.23 11.2 0.1 2.0 2 0 0 2 2 2 0 MarR family DUF4423 PF14394.1 gi|294494975|ref|YP_003541468.1| - 0.054 13.0 0.2 0.12 11.9 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Phage_rep_org_N PF09681.5 gi|294494975|ref|YP_003541468.1| - 0.07 12.7 0.5 0.92 9.0 0.1 2.1 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_34 PF13601.1 gi|294494975|ref|YP_003541468.1| - 0.096 12.7 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r3 PF04539.11 gi|294494975|ref|YP_003541468.1| - 0.11 12.3 0.2 0.25 11.2 0.2 1.6 1 0 0 1 1 1 0 Sigma-70 region 3 Rio2_N PF09202.6 gi|294494975|ref|YP_003541468.1| - 0.14 12.2 0.3 1.3 9.0 0.0 2.1 2 0 0 2 2 2 0 Rio2, N-terminal HTH_11 PF08279.7 gi|294494975|ref|YP_003541468.1| - 0.31 10.7 1.8 0.61 9.7 0.4 1.9 2 0 0 2 2 2 0 HTH domain Ribosomal_S8e PF01201.17 gi|294494976|ref|YP_003541469.1| - 6.2e-36 123.4 7.5 6.7e-36 123.3 5.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e K167R PF08065.7 gi|294494976|ref|YP_003541469.1| - 0.44 10.6 3.9 0.65 10.1 2.7 1.4 1 1 0 1 1 1 0 K167R (NUC007) repeat Lactamase_B_2 PF12706.2 gi|294494977|ref|YP_003541470.1| - 1.3e-29 103.1 0.0 1.7e-29 102.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|294494977|ref|YP_003541470.1| - 4.1e-16 59.2 0.0 1.9e-15 57.0 0.0 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|294494977|ref|YP_003541470.1| - 0.00074 18.9 0.0 0.0017 17.7 0.0 1.6 1 0 0 1 1 1 1 tRNase Z endonuclease NmrA PF05368.8 gi|294494977|ref|YP_003541470.1| - 0.021 14.1 0.0 0.03 13.5 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family NAD_binding_10 PF13460.1 gi|294494977|ref|YP_003541470.1| - 0.1 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding AAA PF00004.24 gi|294494979|ref|YP_003541472.1| - 4.1e-36 124.0 0.1 9.3e-36 122.9 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|294494979|ref|YP_003541472.1| - 5.4e-08 32.9 0.2 1.6e-07 31.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|294494979|ref|YP_003541472.1| - 1.1e-06 27.7 0.0 3.7e-06 25.9 0.0 1.9 1 1 1 2 2 2 1 TIP49 C-terminus AAA_17 PF13207.1 gi|294494979|ref|YP_003541472.1| - 1.2e-06 29.3 0.6 3.8e-06 27.7 0.1 2.2 2 1 0 2 2 1 1 AAA domain RuvB_N PF05496.7 gi|294494979|ref|YP_003541472.1| - 8.3e-06 25.0 0.0 0.00012 21.2 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|294494979|ref|YP_003541472.1| - 1.2e-05 25.4 0.1 0.00086 19.4 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|294494979|ref|YP_003541472.1| - 4.6e-05 23.4 0.0 0.00014 21.8 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|294494979|ref|YP_003541472.1| - 8.7e-05 22.8 0.0 0.00021 21.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|294494979|ref|YP_003541472.1| - 0.00016 21.5 0.0 0.00034 20.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|294494979|ref|YP_003541472.1| - 0.00023 20.8 0.1 0.0039 16.9 0.0 2.9 3 1 0 3 3 2 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|294494979|ref|YP_003541472.1| - 0.00052 19.4 0.0 0.00091 18.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|294494979|ref|YP_003541472.1| - 0.0039 16.3 0.0 0.0088 15.2 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|294494979|ref|YP_003541472.1| - 0.0075 16.2 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|294494979|ref|YP_003541472.1| - 0.0081 15.6 0.0 0.023 14.2 0.0 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain Torsin PF06309.6 gi|294494979|ref|YP_003541472.1| - 0.0093 15.8 0.0 0.033 14.0 0.0 1.8 2 0 0 2 2 2 1 Torsin DUF815 PF05673.8 gi|294494979|ref|YP_003541472.1| - 0.012 14.5 0.0 0.026 13.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|294494979|ref|YP_003541472.1| - 0.02 15.0 0.0 0.072 13.2 0.0 2.0 2 0 0 2 2 1 0 RNA helicase AAA_14 PF13173.1 gi|294494979|ref|YP_003541472.1| - 0.023 14.5 0.3 0.18 11.7 0.0 2.3 2 1 0 3 3 2 0 AAA domain AAA_25 PF13481.1 gi|294494979|ref|YP_003541472.1| - 0.035 13.5 0.5 0.6 9.4 0.1 2.1 1 1 1 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|294494979|ref|YP_003541472.1| - 0.046 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain ResIII PF04851.10 gi|294494979|ref|YP_003541472.1| - 0.052 13.3 0.2 0.2 11.4 0.0 2.0 1 1 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_3 PF07726.6 gi|294494979|ref|YP_003541472.1| - 0.057 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|294494979|ref|YP_003541472.1| - 0.085 12.5 0.0 0.22 11.1 0.0 1.7 2 0 0 2 2 2 0 NACHT domain Parvo_NS1 PF01057.12 gi|294494979|ref|YP_003541472.1| - 0.13 11.0 0.0 0.23 10.2 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Response_reg PF00072.19 gi|294494981|ref|YP_003541474.1| - 9.1e-30 102.9 0.3 1e-29 102.8 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain GutM PF06923.6 gi|294494981|ref|YP_003541474.1| - 0.092 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Glucitol operon activator protein (GutM) Thi4 PF01946.12 gi|294494982|ref|YP_003541475.1| - 1.7e-86 289.0 0.9 1.9e-86 288.8 0.6 1.0 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|294494982|ref|YP_003541475.1| - 6.9e-06 25.4 0.2 1e-05 24.8 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|294494982|ref|YP_003541475.1| - 2.1e-05 24.4 0.1 4.9e-05 23.2 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|294494982|ref|YP_003541475.1| - 3.3e-05 23.8 0.1 4e-05 23.5 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|294494982|ref|YP_003541475.1| - 4.1e-05 22.6 2.2 0.00037 19.5 0.3 2.1 1 1 1 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|294494982|ref|YP_003541475.1| - 8e-05 21.6 1.3 0.0003 19.7 0.4 1.9 1 1 1 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|294494982|ref|YP_003541475.1| - 0.00016 20.8 0.1 0.00024 20.2 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|294494982|ref|YP_003541475.1| - 0.0021 16.5 1.5 0.0031 16.0 1.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|294494982|ref|YP_003541475.1| - 0.016 14.1 0.3 0.12 11.2 0.1 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein GIDA PF01134.17 gi|294494982|ref|YP_003541475.1| - 0.017 13.9 0.3 0.024 13.5 0.2 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A K_oxygenase PF13434.1 gi|294494982|ref|YP_003541475.1| - 0.076 11.9 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) DUF356 PF04009.7 gi|294494983|ref|YP_003541476.1| - 8.9e-41 138.2 0.0 1e-40 138.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF356) tRNA_m1G_MT PF01746.16 gi|294494983|ref|YP_003541476.1| - 0.14 11.6 0.0 0.24 10.9 0.0 1.3 1 1 0 1 1 1 0 tRNA (Guanine-1)-methyltransferase P5CR_dimer PF14748.1 gi|294494984|ref|YP_003541477.1| - 9.9e-45 150.9 1.0 2e-44 149.9 0.7 1.5 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|294494984|ref|YP_003541477.1| - 4.4e-22 78.3 0.3 4.4e-22 78.3 0.2 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|294494984|ref|YP_003541477.1| - 1.2e-08 34.9 0.6 2.5e-08 33.9 0.4 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|294494984|ref|YP_003541477.1| - 1e-06 28.5 4.1 9.3e-06 25.4 2.8 2.2 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.12 gi|294494984|ref|YP_003541477.1| - 0.00012 21.0 0.4 0.0002 20.3 0.3 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|294494984|ref|YP_003541477.1| - 0.00095 18.3 0.3 0.0022 17.1 0.0 1.8 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.4 gi|294494984|ref|YP_003541477.1| - 0.0011 18.6 2.3 0.0053 16.4 0.0 2.6 2 1 0 3 3 3 1 Rossmann-like domain GFO_IDH_MocA PF01408.17 gi|294494984|ref|YP_003541477.1| - 0.0026 18.2 0.1 0.011 16.2 0.0 2.0 1 1 1 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_7 PF13241.1 gi|294494984|ref|YP_003541477.1| - 0.0068 16.6 0.1 0.013 15.7 0.0 1.6 1 1 0 1 1 1 1 Putative NAD(P)-binding HARE-HTH PF05066.8 gi|294494984|ref|YP_003541477.1| - 0.016 15.5 0.1 0.33 11.3 0.0 2.3 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain ApbA PF02558.11 gi|294494984|ref|YP_003541477.1| - 0.017 14.5 2.5 0.029 13.7 0.8 2.1 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|294494984|ref|YP_003541477.1| - 0.08 13.0 1.9 0.31 11.1 1.3 2.1 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase HTH_19 PF12844.2 gi|294494985|ref|YP_003541478.1| - 4.7e-10 39.3 0.9 8.2e-10 38.5 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|294494985|ref|YP_003541478.1| - 4.4e-09 36.0 1.6 7.1e-09 35.3 1.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|294494985|ref|YP_003541478.1| - 1.6e-08 34.6 0.0 2.4e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|294494985|ref|YP_003541478.1| - 9.4e-06 25.1 0.3 1.5e-05 24.5 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain ASD2 PF08687.6 gi|294494985|ref|YP_003541478.1| - 0.027 13.7 1.5 0.031 13.5 1.0 1.1 1 0 0 1 1 1 0 Apx/Shroom domain ASD2 V_ATPase_I PF01496.14 gi|294494985|ref|YP_003541478.1| - 0.046 11.5 1.1 0.052 11.4 0.8 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF1217 PF06748.7 gi|294494985|ref|YP_003541478.1| - 0.097 12.7 0.0 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1217) HTH_37 PF13744.1 gi|294494985|ref|YP_003541478.1| - 0.1 12.4 0.3 0.21 11.3 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain AAA PF00004.24 gi|294494986|ref|YP_003541479.1| - 3.1e-44 150.3 1.0 1.1e-43 148.6 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|294494986|ref|YP_003541479.1| - 5.4e-08 32.6 0.1 1.9e-07 30.8 0.1 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|294494986|ref|YP_003541479.1| - 5.2e-07 29.7 0.0 1.5e-06 28.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|294494986|ref|YP_003541479.1| - 5.3e-06 26.5 0.0 1.5e-05 25.0 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|294494986|ref|YP_003541479.1| - 2.7e-05 24.9 0.1 0.00022 22.0 0.0 2.4 3 0 0 3 3 2 1 AAA domain AAA_22 PF13401.1 gi|294494986|ref|YP_003541479.1| - 2.8e-05 24.2 1.2 0.0013 18.8 0.2 2.6 2 1 0 2 2 1 1 AAA domain DUF815 PF05673.8 gi|294494986|ref|YP_003541479.1| - 0.00017 20.6 0.0 0.00036 19.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_19 PF13245.1 gi|294494986|ref|YP_003541479.1| - 0.00017 21.2 0.1 0.00038 20.1 0.1 1.5 1 0 0 1 1 1 1 Part of AAA domain RuvB_N PF05496.7 gi|294494986|ref|YP_003541479.1| - 0.00023 20.2 0.0 0.00049 19.2 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|294494986|ref|YP_003541479.1| - 0.00096 19.4 0.1 0.0057 16.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain Filament PF00038.16 gi|294494986|ref|YP_003541479.1| - 0.0011 18.5 3.0 0.0018 17.7 2.1 1.3 1 0 0 1 1 1 1 Intermediate filament protein Zeta_toxin PF06414.7 gi|294494986|ref|YP_003541479.1| - 0.0015 17.6 0.1 0.0041 16.2 0.1 1.6 1 1 0 1 1 1 1 Zeta toxin IstB_IS21 PF01695.12 gi|294494986|ref|YP_003541479.1| - 0.0017 17.7 0.0 0.0042 16.5 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|294494986|ref|YP_003541479.1| - 0.0021 17.9 0.0 0.0038 17.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.6 gi|294494986|ref|YP_003541479.1| - 0.0024 17.5 0.0 0.0056 16.2 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|294494986|ref|YP_003541479.1| - 0.0024 16.6 0.0 0.0045 15.7 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus AAA_28 PF13521.1 gi|294494986|ref|YP_003541479.1| - 0.0026 17.7 0.0 0.0046 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|294494986|ref|YP_003541479.1| - 0.004 16.3 0.1 0.0084 15.2 0.1 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|294494986|ref|YP_003541479.1| - 0.0074 15.8 0.0 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain Troponin PF00992.15 gi|294494986|ref|YP_003541479.1| - 0.0082 16.2 1.8 0.016 15.2 1.3 1.4 1 0 0 1 1 1 1 Troponin KaiC PF06745.8 gi|294494986|ref|YP_003541479.1| - 0.0085 15.2 1.6 0.4 9.7 0.0 3.0 3 0 0 3 3 3 1 KaiC AAA_11 PF13086.1 gi|294494986|ref|YP_003541479.1| - 0.009 15.6 0.4 0.2 11.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|294494986|ref|YP_003541479.1| - 0.0091 15.4 0.0 0.11 12.0 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|294494986|ref|YP_003541479.1| - 0.011 15.8 0.0 0.033 14.3 0.0 1.9 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.1 gi|294494986|ref|YP_003541479.1| - 0.013 15.4 0.0 0.038 13.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_tran_2 PF12848.2 gi|294494986|ref|YP_003541479.1| - 0.018 14.8 0.9 0.043 13.6 0.6 1.5 1 0 0 1 1 1 0 ABC transporter TPR_MLP1_2 PF07926.7 gi|294494986|ref|YP_003541479.1| - 0.022 14.4 1.4 0.041 13.6 1.0 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein NACHT PF05729.7 gi|294494986|ref|YP_003541479.1| - 0.023 14.3 0.6 0.2 11.2 0.0 2.6 2 1 1 3 3 3 0 NACHT domain NTPase_1 PF03266.10 gi|294494986|ref|YP_003541479.1| - 0.028 14.1 0.0 0.13 12.0 0.0 2.2 2 0 0 2 2 1 0 NTPase Torsin PF06309.6 gi|294494986|ref|YP_003541479.1| - 0.062 13.1 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 Torsin Tektin PF03148.9 gi|294494986|ref|YP_003541479.1| - 0.064 11.7 3.4 0.039 12.5 0.9 1.6 2 0 0 2 2 2 0 Tektin family ResIII PF04851.10 gi|294494986|ref|YP_003541479.1| - 0.07 12.9 0.3 0.22 11.3 0.0 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Sigma54_activ_2 PF14532.1 gi|294494986|ref|YP_003541479.1| - 0.074 13.1 0.0 0.4 10.7 0.0 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain DUF2681 PF10883.3 gi|294494986|ref|YP_003541479.1| - 0.084 13.0 2.0 0.16 12.1 1.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) AAA_25 PF13481.1 gi|294494986|ref|YP_003541479.1| - 0.084 12.2 4.8 0.37 10.1 1.8 3.0 2 1 0 2 2 2 0 AAA domain ADIP PF11559.3 gi|294494986|ref|YP_003541479.1| - 0.11 12.4 5.9 0.21 11.4 4.1 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Parvo_NS1 PF01057.12 gi|294494986|ref|YP_003541479.1| - 0.11 11.3 0.0 0.22 10.3 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Guanylate_kin PF00625.16 gi|294494986|ref|YP_003541479.1| - 0.13 11.6 1.6 2.7 7.4 0.0 3.0 4 0 0 4 4 3 0 Guanylate kinase AAA_24 PF13479.1 gi|294494986|ref|YP_003541479.1| - 0.15 11.6 1.2 0.73 9.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|294494986|ref|YP_003541479.1| - 0.16 12.2 3.6 20 5.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain IncA PF04156.9 gi|294494986|ref|YP_003541479.1| - 0.33 10.5 2.5 0.62 9.6 1.7 1.4 1 0 0 1 1 1 0 IncA protein bZIP_2 PF07716.10 gi|294494986|ref|YP_003541479.1| - 0.75 9.6 6.8 0.48 10.2 0.9 2.4 1 1 1 2 2 2 0 Basic region leucine zipper DUF904 PF06005.7 gi|294494986|ref|YP_003541479.1| - 1.4 9.2 6.0 2.4 8.5 3.5 1.9 2 0 0 2 2 1 0 Protein of unknown function (DUF904) DUF99 PF01949.11 gi|294494987|ref|YP_003541480.1| - 2.3e-51 173.5 0.1 2.6e-51 173.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 PGM_PMM_I PF02878.11 gi|294494988|ref|YP_003541481.1| - 2.4e-42 143.6 0.1 7.5e-42 142.0 0.1 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|294494988|ref|YP_003541481.1| - 1.2e-25 89.7 0.0 2.5e-25 88.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|294494988|ref|YP_003541481.1| - 2.2e-21 76.0 0.0 4.9e-21 74.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|294494988|ref|YP_003541481.1| - 1.8e-12 47.0 0.0 5.6e-12 45.4 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_18 PF12847.2 gi|294494988|ref|YP_003541481.1| - 0.0021 18.5 0.0 0.0071 16.9 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_29 PF03141.11 gi|294494988|ref|YP_003541481.1| - 0.039 12.2 0.0 0.058 11.7 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase SRP19 PF01922.12 gi|294494989|ref|YP_003541482.1| - 3.2e-25 88.5 0.3 3.7e-25 88.3 0.2 1.0 1 0 0 1 1 1 1 SRP19 protein Sec61_beta PF03911.11 gi|294494990|ref|YP_003541483.1| - 1.2e-09 37.8 0.0 1.8e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 Sec61beta family IF-2B PF01008.12 gi|294494991|ref|YP_003541484.1| - 4.2e-84 281.8 0.0 5e-84 281.6 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family HD PF01966.17 gi|294494992|ref|YP_003541485.1| - 4e-11 42.9 0.0 9.1e-11 41.8 0.0 1.7 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|294494992|ref|YP_003541485.1| - 0.0057 15.9 0.0 0.012 14.9 0.0 1.4 1 0 0 1 1 1 1 HDOD domain GCD14 PF08704.5 gi|294494993|ref|YP_003541486.1| - 6.6e-16 58.5 0.1 1.6e-12 47.4 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_18 PF12847.2 gi|294494993|ref|YP_003541486.1| - 3e-11 43.8 0.1 5.1e-11 43.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|294494993|ref|YP_003541486.1| - 2e-10 40.4 0.1 2.7e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|294494993|ref|YP_003541486.1| - 1.9e-08 34.3 0.1 3.4e-08 33.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|294494993|ref|YP_003541486.1| - 2.7e-08 33.1 0.0 4e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.14 gi|294494993|ref|YP_003541486.1| - 8e-08 32.0 0.0 1.2e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|294494993|ref|YP_003541486.1| - 2.5e-06 27.0 0.1 4.1e-06 26.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|294494993|ref|YP_003541486.1| - 0.00032 19.9 0.1 0.00038 19.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.7 gi|294494993|ref|YP_003541486.1| - 0.00083 19.8 0.1 0.0015 19.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|294494993|ref|YP_003541486.1| - 0.00099 19.9 0.1 0.0029 18.4 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|294494993|ref|YP_003541486.1| - 0.0033 17.7 0.0 0.0059 16.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.11 gi|294494993|ref|YP_003541486.1| - 0.015 14.2 0.0 0.018 13.9 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase UPF0020 PF01170.13 gi|294494993|ref|YP_003541486.1| - 0.016 14.8 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.1 gi|294494993|ref|YP_003541486.1| - 0.033 13.9 0.0 0.058 13.1 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.12 gi|294494993|ref|YP_003541486.1| - 0.058 12.4 0.0 0.093 11.7 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_12 PF08242.7 gi|294494993|ref|YP_003541486.1| - 0.13 12.7 0.0 0.21 12.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain zf-like PF04071.7 gi|294494994|ref|YP_003541487.1| - 1.1e-29 101.9 5.0 2.5e-29 100.8 3.5 1.6 1 0 0 1 1 1 1 Cysteine-rich small domain Aminotran_1_2 PF00155.16 gi|294494994|ref|YP_003541487.1| - 1.4e-25 90.0 0.0 2.3e-25 89.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II CobD_Cbib PF03186.8 gi|294494995|ref|YP_003541488.1| - 1.3e-93 313.3 0.1 1.6e-93 313.0 0.1 1.0 1 0 0 1 1 1 1 CobD/Cbib protein PgpA PF04608.8 gi|294494996|ref|YP_003541489.1| - 8.3e-07 28.9 0.0 1.1e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A CobS PF02654.10 gi|294494997|ref|YP_003541490.1| - 9e-45 153.0 16.9 1.2e-43 149.3 11.7 1.9 1 1 0 1 1 1 1 Cobalamin-5-phosphate synthase DUF1469 PF07332.6 gi|294494997|ref|YP_003541490.1| - 0.2 11.3 0.0 0.2 11.3 0.0 3.7 3 1 0 3 3 3 0 Protein of unknown function (DUF1469) DUF4131 PF13567.1 gi|294494997|ref|YP_003541490.1| - 6.2 6.1 10.5 0.92 8.8 0.1 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) Form-deh_trans PF09163.6 gi|294494997|ref|YP_003541490.1| - 8.7 5.9 9.3 3.2 7.3 0.5 3.2 1 1 1 2 2 2 0 Formate dehydrogenase N, transmembrane NTP_transf_3 PF12804.2 gi|294494998|ref|YP_003541491.1| - 6.1e-16 58.9 0.0 8.1e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|294494998|ref|YP_003541491.1| - 4.1e-05 23.2 0.0 8.7e-05 22.1 0.0 1.6 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|294494998|ref|YP_003541491.1| - 5.6e-05 22.8 0.0 9.8e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase CofC PF01983.11 gi|294494998|ref|YP_003541491.1| - 0.00052 19.0 0.1 0.0011 18.0 0.0 1.5 2 0 0 2 2 2 1 Guanylyl transferase CofC like NTP_transferase PF00483.18 gi|294494998|ref|YP_003541491.1| - 0.05 12.8 0.0 0.073 12.3 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyl transferase KaiC PF06745.8 gi|294495000|ref|YP_003541493.1| - 1.5e-49 168.1 1.0 1.7e-49 167.9 0.7 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|294495000|ref|YP_003541493.1| - 3.4e-07 28.9 0.3 4.3e-07 28.6 0.2 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.1 gi|294495000|ref|YP_003541493.1| - 0.00012 21.5 0.0 0.00016 21.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|294495000|ref|YP_003541493.1| - 0.00054 18.9 0.0 0.00088 18.2 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA PF00004.24 gi|294495000|ref|YP_003541493.1| - 0.0065 16.6 0.9 0.02 15.0 0.6 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|294495000|ref|YP_003541493.1| - 0.0073 15.3 0.0 0.011 14.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|294495000|ref|YP_003541493.1| - 0.047 13.8 0.0 0.08 13.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|294495000|ref|YP_003541493.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Rad51 PF08423.6 gi|294495001|ref|YP_003541494.1| - 4.2e-33 114.3 0.2 5e-33 114.0 0.1 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|294495001|ref|YP_003541494.1| - 4.2e-13 49.1 0.0 6.8e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|294495001|ref|YP_003541494.1| - 3e-12 46.1 0.9 8e-12 44.7 0.6 1.6 1 1 0 1 1 1 1 KaiC RecA PF00154.16 gi|294495001|ref|YP_003541494.1| - 3.6e-11 42.7 0.0 4.6e-11 42.3 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Zot PF05707.7 gi|294495001|ref|YP_003541494.1| - 1.3e-06 28.0 0.1 1.6e-06 27.7 0.1 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) SRP54 PF00448.17 gi|294495001|ref|YP_003541494.1| - 1.5e-06 27.7 0.0 2.1e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain CbiA PF01656.18 gi|294495001|ref|YP_003541494.1| - 9.7e-05 21.8 0.0 0.00012 21.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.1 gi|294495001|ref|YP_003541494.1| - 0.00011 21.8 0.0 0.00025 20.7 0.0 1.5 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|294495001|ref|YP_003541494.1| - 0.00048 19.2 0.0 0.00059 18.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_10 PF12846.2 gi|294495001|ref|YP_003541494.1| - 0.0013 18.1 0.0 0.33 10.3 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|294495001|ref|YP_003541494.1| - 0.002 18.2 0.1 0.0038 17.3 0.1 1.5 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|294495001|ref|YP_003541494.1| - 0.0033 17.1 0.0 0.0067 16.1 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|294495001|ref|YP_003541494.1| - 0.0034 17.6 0.1 0.0055 16.9 0.0 1.4 1 1 0 1 1 1 1 ABC transporter DnaB_C PF03796.10 gi|294495001|ref|YP_003541494.1| - 0.0043 15.9 0.0 2.1 7.1 0.0 2.2 1 1 1 2 2 2 2 DnaB-like helicase C terminal domain TrwB_AAD_bind PF10412.4 gi|294495001|ref|YP_003541494.1| - 0.0075 14.9 0.0 0.027 13.1 0.0 1.9 2 1 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain Arch_ATPase PF01637.13 gi|294495001|ref|YP_003541494.1| - 0.0097 15.6 0.1 0.014 15.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|294495001|ref|YP_003541494.1| - 0.012 15.5 0.1 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|294495001|ref|YP_003541494.1| - 0.022 14.9 0.0 0.043 14.0 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_31 PF13614.1 gi|294495001|ref|YP_003541494.1| - 0.027 14.4 0.0 0.04 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|294495001|ref|YP_003541494.1| - 0.038 13.8 0.0 0.056 13.2 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|294495001|ref|YP_003541494.1| - 0.041 13.1 0.0 0.092 11.9 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein DEAD PF00270.24 gi|294495001|ref|YP_003541494.1| - 0.075 12.5 0.1 0.4 10.1 0.0 2.1 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|294495001|ref|YP_003541494.1| - 0.078 12.7 0.0 0.19 11.4 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain KAP_NTPase PF07693.9 gi|294495001|ref|YP_003541494.1| - 0.11 11.4 0.0 0.22 10.4 0.0 1.5 2 0 0 2 2 2 0 KAP family P-loop domain IstB_IS21 PF01695.12 gi|294495001|ref|YP_003541494.1| - 0.13 11.6 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Glutaredoxin PF00462.19 gi|294495002|ref|YP_003541495.1| - 4.7e-09 36.1 0.1 8.3e-09 35.3 0.0 1.5 2 0 0 2 2 2 1 Glutaredoxin DUF836 PF05768.9 gi|294495002|ref|YP_003541495.1| - 4.9e-05 23.5 0.0 5.6e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N_3 PF13417.1 gi|294495002|ref|YP_003541495.1| - 0.0044 17.2 0.0 0.0051 16.9 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.1 gi|294495002|ref|YP_003541495.1| - 0.016 15.3 0.2 0.032 14.4 0.1 1.4 1 1 0 1 1 1 0 Thioredoxin-like domain GST_N PF02798.15 gi|294495002|ref|YP_003541495.1| - 0.018 15.1 0.0 0.022 14.9 0.0 1.1 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain TFIIIC_sub6 PF10419.4 gi|294495002|ref|YP_003541495.1| - 0.092 12.2 0.0 0.26 10.7 0.0 1.7 2 0 0 2 2 2 0 TFIIIC subunit NRDD PF13597.1 gi|294495003|ref|YP_003541496.1| - 3e-149 497.6 0.0 3.5e-149 497.3 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase DUF2953 PF11167.3 gi|294495003|ref|YP_003541496.1| - 0.11 12.4 0.2 0.28 11.1 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2953) Radical_SAM PF04055.16 gi|294495004|ref|YP_003541497.1| - 3.8e-13 49.9 0.0 5.4e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|294495004|ref|YP_003541497.1| - 2.2e-11 44.0 0.0 3.7e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|294495004|ref|YP_003541497.1| - 1.2e-08 34.9 0.0 2.1e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain TatD_DNase PF01026.16 gi|294495004|ref|YP_003541497.1| - 0.011 14.9 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 TatD related DNase AIRS PF00586.19 gi|294495005|ref|YP_003541498.1| - 8.3e-20 70.8 0.3 1.9e-19 69.6 0.2 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|294495005|ref|YP_003541498.1| - 4.1e-09 36.6 0.1 6.3e-09 36.0 0.1 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain S-layer PF07752.6 gi|294495006|ref|YP_003541499.1| - 8.6e-157 520.0 44.7 3.7e-81 272.1 12.2 3.1 3 0 0 3 3 3 2 S-layer protein fn3 PF00041.16 gi|294495006|ref|YP_003541499.1| - 3e-09 36.8 21.6 0.047 13.8 0.4 5.8 5 0 0 5 5 5 4 Fibronectin type III domain DUF4198 PF10670.4 gi|294495006|ref|YP_003541499.1| - 5.6e-05 23.2 5.5 0.0081 16.1 0.1 3.6 4 0 0 4 4 4 2 Domain of unknown function (DUF4198) PEGA PF08308.6 gi|294495006|ref|YP_003541499.1| - 7.1e-05 22.5 0.4 0.0057 16.4 0.0 3.9 4 0 0 4 4 4 1 PEGA domain Filamin PF00630.14 gi|294495006|ref|YP_003541499.1| - 0.00069 20.1 0.8 0.14 12.7 0.3 3.7 2 1 0 2 2 2 1 Filamin/ABP280 repeat tRNA-synt_1c_C PF03950.13 gi|294495006|ref|YP_003541499.1| - 0.0054 16.4 6.5 0.87 9.2 0.1 3.6 3 1 1 4 4 4 2 tRNA synthetases class I (E and Q), anti-codon binding domain BiPBP_C PF06832.7 gi|294495006|ref|YP_003541499.1| - 0.016 15.1 0.0 0.054 13.4 0.0 1.9 1 0 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family Cupredoxin_1 PF13473.1 gi|294495006|ref|YP_003541499.1| - 0.045 13.6 0.1 1.1 9.2 0.0 3.3 3 0 0 3 3 3 0 Cupredoxin-like domain DUF3707 PF12499.3 gi|294495006|ref|YP_003541499.1| - 0.33 11.2 10.8 5 7.4 0.6 3.7 1 1 2 3 3 3 0 Pherophorin DUF2369 PF10179.4 gi|294495006|ref|YP_003541499.1| - 7.9 5.4 6.1 38 3.2 0.0 3.6 4 0 0 4 4 4 0 Uncharacterised conserved protein (DUF2369) HTH_3 PF01381.17 gi|294495007|ref|YP_003541500.1| - 2.8e-06 27.0 0.6 1.1e-05 25.1 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|294495007|ref|YP_003541500.1| - 0.00072 19.5 0.0 0.002 18.1 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain CoA_trans PF01144.18 gi|294495007|ref|YP_003541500.1| - 0.03 13.5 0.0 0.039 13.1 0.0 1.2 1 0 0 1 1 1 0 Coenzyme A transferase HTH_26 PF13443.1 gi|294495007|ref|YP_003541500.1| - 0.04 14.1 0.0 0.085 13.0 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_psq PF05225.11 gi|294495007|ref|YP_003541500.1| - 1.6 8.3 4.4 9.2 5.9 0.0 3.1 3 0 0 3 3 3 0 helix-turn-helix, Psq domain NMT1_2 PF13379.1 gi|294495008|ref|YP_003541501.1| - 1.3e-46 159.0 0.0 1.7e-46 158.6 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|294495008|ref|YP_003541501.1| - 3e-19 69.4 0.0 6.4e-19 68.4 0.0 1.5 1 1 1 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|294495008|ref|YP_003541501.1| - 7.8e-10 38.5 0.0 1.1e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|294495008|ref|YP_003541501.1| - 0.00021 20.6 0.0 0.0058 15.9 0.0 2.7 2 1 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 LysR_substrate PF03466.15 gi|294495008|ref|YP_003541501.1| - 0.0037 16.3 0.0 0.083 11.9 0.0 2.1 1 1 1 2 2 2 1 LysR substrate binding domain CBF PF03914.12 gi|294495008|ref|YP_003541501.1| - 0.015 14.7 0.0 2.2 7.7 0.0 2.1 2 0 0 2 2 2 0 CBF/Mak21 family LPAM_1 PF08139.7 gi|294495008|ref|YP_003541501.1| - 0.069 13.4 2.8 0.17 12.1 1.9 1.7 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DUF1255 PF06865.6 gi|294495008|ref|YP_003541501.1| - 0.087 13.1 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1255) BPD_transp_1 PF00528.17 gi|294495009|ref|YP_003541502.1| - 1.5e-18 66.9 11.8 1.5e-18 66.9 8.2 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|294495010|ref|YP_003541503.1| - 2.8e-32 111.8 0.0 4.4e-32 111.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|294495010|ref|YP_003541503.1| - 2.4e-13 50.6 0.0 2.6e-06 27.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|294495010|ref|YP_003541503.1| - 3.1e-07 29.8 0.0 0.00029 20.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|294495010|ref|YP_003541503.1| - 8.5e-07 29.1 0.0 1.2e-06 28.6 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|294495010|ref|YP_003541503.1| - 1.5e-06 28.4 0.1 1.3e-05 25.3 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|294495010|ref|YP_003541503.1| - 1.5e-05 25.0 0.1 6.9e-05 23.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|294495010|ref|YP_003541503.1| - 2e-05 25.4 0.1 0.001 19.8 0.0 2.4 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|294495010|ref|YP_003541503.1| - 0.00038 19.6 0.0 0.00065 18.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|294495010|ref|YP_003541503.1| - 0.00091 18.9 0.0 0.025 14.2 0.0 2.1 2 0 0 2 2 2 1 Archaeal ATPase AAA_28 PF13521.1 gi|294495010|ref|YP_003541503.1| - 0.001 19.0 0.0 0.0052 16.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|294495010|ref|YP_003541503.1| - 0.0014 19.0 0.0 0.0028 18.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|294495010|ref|YP_003541503.1| - 0.0021 17.9 0.0 0.0049 16.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|294495010|ref|YP_003541503.1| - 0.003 16.9 0.0 0.03 13.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|294495010|ref|YP_003541503.1| - 0.004 17.4 0.0 0.013 15.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|294495010|ref|YP_003541503.1| - 0.0048 16.5 0.0 0.013 15.1 0.0 1.7 1 0 0 1 1 1 1 NACHT domain AAA_19 PF13245.1 gi|294495010|ref|YP_003541503.1| - 0.0074 16.0 0.0 0.035 13.8 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_29 PF13555.1 gi|294495010|ref|YP_003541503.1| - 0.0077 15.7 0.0 0.019 14.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|294495010|ref|YP_003541503.1| - 0.01 15.5 0.1 3.1 7.4 0.0 2.2 2 0 0 2 2 2 0 NTPase ATP-synt_ab PF00006.20 gi|294495010|ref|YP_003541503.1| - 0.014 14.9 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.9 gi|294495010|ref|YP_003541503.1| - 0.015 14.9 0.0 0.059 13.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SMC_N PF02463.14 gi|294495010|ref|YP_003541503.1| - 0.017 14.3 0.0 1.5 7.9 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_14 PF13173.1 gi|294495010|ref|YP_003541503.1| - 0.017 14.9 0.0 0.04 13.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|294495010|ref|YP_003541503.1| - 0.018 13.7 0.0 0.027 13.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein PduV-EutP PF10662.4 gi|294495010|ref|YP_003541503.1| - 0.028 13.9 0.0 0.14 11.6 0.0 2.0 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.17 gi|294495010|ref|YP_003541503.1| - 0.029 13.2 0.1 0.07 11.9 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.1 gi|294495010|ref|YP_003541503.1| - 0.033 13.7 0.0 0.077 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|294495010|ref|YP_003541503.1| - 0.039 13.4 0.0 0.068 12.6 0.0 1.3 1 1 0 1 1 1 0 DEAD/DEAH box helicase MobB PF03205.9 gi|294495010|ref|YP_003541503.1| - 0.044 13.4 0.0 0.079 12.6 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|294495010|ref|YP_003541503.1| - 0.055 13.6 0.0 0.51 10.5 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA_10 PF12846.2 gi|294495010|ref|YP_003541503.1| - 0.056 12.8 0.2 0.22 10.9 0.0 1.8 1 1 1 2 2 2 0 AAA-like domain Miro PF08477.8 gi|294495010|ref|YP_003541503.1| - 0.059 13.8 0.0 0.15 12.5 0.0 1.6 2 0 0 2 2 1 0 Miro-like protein AAA_24 PF13479.1 gi|294495010|ref|YP_003541503.1| - 0.066 12.7 0.1 0.21 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|294495010|ref|YP_003541503.1| - 0.071 12.5 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein PhoH PF02562.11 gi|294495010|ref|YP_003541503.1| - 0.1 11.8 0.0 0.26 10.4 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein SbcCD_C PF13558.1 gi|294495010|ref|YP_003541503.1| - 0.12 12.3 0.0 0.28 11.1 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Hexapep PF00132.19 gi|294495011|ref|YP_003541504.1| - 2.1e-06 26.9 1.0 0.03 13.8 0.0 3.0 3 1 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Bactofilin PF04519.8 gi|294495011|ref|YP_003541504.1| - 4.2e-06 26.7 0.1 1.2e-05 25.2 0.0 1.7 1 1 0 1 1 1 1 Polymer-forming cytoskeletal DUF3494 PF11999.3 gi|294495011|ref|YP_003541504.1| - 0.034 13.7 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3494) Prenyltrans_1 PF13243.1 gi|294495012|ref|YP_003541505.1| - 2.3e-11 43.6 1.1 2.3e-05 24.3 0.0 3.7 3 1 1 4 4 4 2 Prenyltransferase-like Prenyltrans_2 PF13249.1 gi|294495012|ref|YP_003541505.1| - 1.9e-10 41.1 3.5 6.8e-10 39.3 0.6 2.8 2 1 1 3 3 3 1 Prenyltransferase-like Prenyltrans PF00432.16 gi|294495012|ref|YP_003541505.1| - 1.8e-07 30.6 1.1 0.002 17.6 0.0 3.4 4 0 0 4 4 4 2 Prenyltransferase and squalene oxidase repeat A2M_comp PF07678.9 gi|294495012|ref|YP_003541505.1| - 0.00021 20.6 0.4 0.056 12.6 0.0 2.9 2 1 1 3 3 3 2 A-macroglobulin complement component Pec_lyase PF09492.5 gi|294495012|ref|YP_003541505.1| - 0.0011 18.1 0.0 5.7 6.0 0.0 3.1 3 0 0 3 3 3 3 Pectic acid lyase DUF1730 PF08331.5 gi|294495012|ref|YP_003541505.1| - 0.018 14.7 0.0 2.9 7.6 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1730) DUF169 PF02596.10 gi|294495013|ref|YP_003541506.1| - 1.3e-61 207.7 0.1 1.5e-61 207.5 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 ParA PF10609.4 gi|294495014|ref|YP_003541507.1| - 1.1e-33 114.9 0.1 2e-33 114.0 0.1 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|294495014|ref|YP_003541507.1| - 2.5e-24 85.7 0.0 3.5e-24 85.3 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|294495014|ref|YP_003541507.1| - 5e-11 42.7 0.0 3.9e-08 33.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.10 gi|294495014|ref|YP_003541507.1| - 1.1e-09 37.7 0.2 1.6e-08 33.9 0.1 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|294495014|ref|YP_003541507.1| - 2.6e-08 33.3 0.2 7.7e-06 25.2 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|294495014|ref|YP_003541507.1| - 7.9e-07 28.4 0.0 1.3e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.1 gi|294495014|ref|YP_003541507.1| - 1.6e-05 24.6 1.2 0.0024 17.4 0.1 2.5 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|294495014|ref|YP_003541507.1| - 0.00019 21.1 2.4 0.0016 18.1 0.1 2.5 2 1 0 2 2 2 1 Part of AAA domain AAA_25 PF13481.1 gi|294495014|ref|YP_003541507.1| - 0.00024 20.5 0.0 0.00039 19.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|294495014|ref|YP_003541507.1| - 0.00037 19.3 0.5 0.00082 18.2 0.1 1.7 2 0 0 2 2 2 1 ArgK protein VirC1 PF07015.6 gi|294495014|ref|YP_003541507.1| - 0.001 18.1 0.0 0.0017 17.5 0.0 1.2 1 0 0 1 1 1 1 VirC1 protein SRP54 PF00448.17 gi|294495014|ref|YP_003541507.1| - 0.001 18.5 0.1 0.0018 17.7 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain DUF258 PF03193.11 gi|294495014|ref|YP_003541507.1| - 0.0024 17.0 0.2 0.0041 16.3 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 APS_kinase PF01583.15 gi|294495014|ref|YP_003541507.1| - 0.0064 16.1 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase MobB PF03205.9 gi|294495014|ref|YP_003541507.1| - 0.0075 15.9 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B KTI12 PF08433.5 gi|294495014|ref|YP_003541507.1| - 0.019 14.2 0.0 0.03 13.5 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_10 PF12846.2 gi|294495014|ref|YP_003541507.1| - 0.024 14.0 0.1 0.034 13.5 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain YhjQ PF06564.7 gi|294495014|ref|YP_003541507.1| - 0.038 13.3 0.2 0.23 10.7 0.1 1.9 2 0 0 2 2 2 0 YhjQ protein AAA_16 PF13191.1 gi|294495014|ref|YP_003541507.1| - 0.059 13.3 0.0 0.083 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|294495014|ref|YP_003541507.1| - 0.065 12.8 0.2 0.11 12.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|294495014|ref|YP_003541507.1| - 0.086 12.5 0.1 0.32 10.6 0.0 2.0 2 1 0 2 2 2 0 NTPase RNA_helicase PF00910.17 gi|294495014|ref|YP_003541507.1| - 0.1 12.7 0.1 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF4182 PF13790.1 gi|294495014|ref|YP_003541507.1| - 0.12 12.1 0.2 0.21 11.3 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4182) AAA_17 PF13207.1 gi|294495014|ref|YP_003541507.1| - 0.12 13.1 0.3 0.19 12.5 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|294495014|ref|YP_003541507.1| - 0.17 11.7 0.1 0.26 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF134 PF02001.11 gi|294495015|ref|YP_003541508.1| - 1.2e-30 105.4 0.2 1.3e-30 105.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|294495015|ref|YP_003541508.1| - 1.3e-05 24.5 0.1 2e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|294495015|ref|YP_003541508.1| - 0.00015 20.9 0.3 0.00032 19.9 0.2 1.5 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.7 gi|294495015|ref|YP_003541508.1| - 0.00098 18.6 0.1 0.0032 17.0 0.0 1.9 2 0 0 2 2 2 1 HTH DNA binding domain HTH_23 PF13384.1 gi|294495015|ref|YP_003541508.1| - 0.0026 17.3 0.0 0.0046 16.5 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.6 gi|294495015|ref|YP_003541508.1| - 0.007 16.0 1.2 0.0083 15.8 0.9 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_28 PF13518.1 gi|294495015|ref|YP_003541508.1| - 0.017 15.0 0.1 0.017 15.0 0.1 1.9 2 1 0 2 2 2 0 Helix-turn-helix domain AAA_16 PF13191.1 gi|294495016|ref|YP_003541509.1| - 6.3e-13 49.1 0.0 1e-11 45.2 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain Cdc6_C PF09079.6 gi|294495016|ref|YP_003541509.1| - 8.3e-08 31.8 0.0 2.7e-07 30.2 0.0 2.0 1 1 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|294495016|ref|YP_003541509.1| - 9.6e-07 28.9 0.0 1.8e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|294495016|ref|YP_003541509.1| - 2.4e-06 27.7 0.0 7.6e-06 26.1 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|294495016|ref|YP_003541509.1| - 4.9e-05 23.1 0.0 0.0001 22.1 0.0 1.6 1 0 0 1 1 1 1 Archaeal ATPase AAA_11 PF13086.1 gi|294495016|ref|YP_003541509.1| - 0.0011 18.6 0.0 0.0013 18.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|294495016|ref|YP_003541509.1| - 0.0013 18.4 0.0 0.0028 17.3 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain DUF815 PF05673.8 gi|294495016|ref|YP_003541509.1| - 0.0016 17.3 0.0 0.0044 15.9 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_35 PF14516.1 gi|294495016|ref|YP_003541509.1| - 0.0019 16.9 0.0 0.069 11.7 0.0 2.2 1 1 0 1 1 1 1 AAA-like domain AAA_24 PF13479.1 gi|294495016|ref|YP_003541509.1| - 0.0029 17.2 0.0 0.0047 16.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|294495016|ref|YP_003541509.1| - 0.0029 16.5 0.0 0.0065 15.3 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain DUF2075 PF09848.4 gi|294495016|ref|YP_003541509.1| - 0.0052 15.8 0.0 0.0091 15.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.21 gi|294495016|ref|YP_003541509.1| - 0.015 14.7 0.0 0.025 14.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_25 PF13481.1 gi|294495016|ref|YP_003541509.1| - 0.035 13.5 0.0 0.14 11.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain KAP_NTPase PF07693.9 gi|294495016|ref|YP_003541509.1| - 0.049 12.6 0.0 0.12 11.2 0.0 1.5 1 1 0 1 1 1 0 KAP family P-loop domain AAA_32 PF13654.1 gi|294495016|ref|YP_003541509.1| - 0.059 12.0 0.0 0.96 8.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|294495016|ref|YP_003541509.1| - 0.085 12.2 0.0 2.3 7.6 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein T2SE PF00437.15 gi|294495016|ref|YP_003541509.1| - 0.092 11.6 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Penicillinase_R PF03965.11 gi|294495016|ref|YP_003541509.1| - 0.13 12.3 0.0 0.32 11.0 0.0 1.7 1 0 0 1 1 1 0 Penicillinase repressor AAA_17 PF13207.1 gi|294495016|ref|YP_003541509.1| - 0.74 10.6 3.3 0.52 11.1 0.1 2.3 2 2 0 2 2 2 0 AAA domain HTH_1 PF00126.22 gi|294495017|ref|YP_003541510.1| - 3.5e-06 26.6 0.0 5.4e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family TOBE PF03459.12 gi|294495017|ref|YP_003541510.1| - 5.2e-06 26.4 0.1 7.9e-06 25.8 0.1 1.3 1 0 0 1 1 1 1 TOBE domain HTH_28 PF13518.1 gi|294495017|ref|YP_003541510.1| - 0.0052 16.7 0.2 0.011 15.7 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain CTP_transf_2 PF01467.21 gi|294495017|ref|YP_003541510.1| - 0.0095 15.9 0.1 0.013 15.5 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase HTH_23 PF13384.1 gi|294495017|ref|YP_003541510.1| - 0.014 15.0 0.2 0.032 13.9 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain Exo_endo_phos PF03372.18 gi|294495018|ref|YP_003541511.1| - 1.2e-26 94.1 0.1 1.4e-26 93.9 0.1 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|294495018|ref|YP_003541511.1| - 5.8e-12 45.2 0.0 8.2e-12 44.7 0.0 1.2 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase DUF3800 PF12686.2 gi|294495018|ref|YP_003541511.1| - 0.056 13.0 0.1 0.067 12.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3800) Cpn60_TCP1 PF00118.19 gi|294495019|ref|YP_003541512.1| - 1.9e-166 554.4 15.9 2.2e-166 554.2 11.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family OpuAC PF04069.7 gi|294495021|ref|YP_003541514.1| - 1.8e-62 211.0 0.2 2e-62 210.8 0.2 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system TFIIA_gamma_N PF02268.11 gi|294495021|ref|YP_003541514.1| - 0.055 13.0 0.1 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 Transcription initiation factor IIA, gamma subunit, helical domain DUF4367 PF14285.1 gi|294495021|ref|YP_003541514.1| - 0.96 8.7 3.8 8.5 5.6 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4367) OpuAC PF04069.7 gi|294495022|ref|YP_003541515.1| - 3.8e-64 216.5 5.2 4.4e-64 216.2 3.6 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system BPD_transp_1 PF00528.17 gi|294495023|ref|YP_003541516.1| - 3e-27 95.3 26.5 1.3e-26 93.2 8.4 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|294495024|ref|YP_003541517.1| - 2.5e-34 118.5 0.0 6e-34 117.2 0.0 1.7 1 0 0 1 1 1 1 ABC transporter CBS PF00571.23 gi|294495024|ref|YP_003541517.1| - 7.9e-12 44.7 0.2 3.9e-07 29.7 0.0 3.0 3 0 0 3 3 2 2 CBS domain AAA_21 PF13304.1 gi|294495024|ref|YP_003541517.1| - 1.8e-09 37.9 0.2 0.00086 19.3 0.0 2.3 1 1 0 2 2 2 2 AAA domain ABC_ATPase PF09818.4 gi|294495024|ref|YP_003541517.1| - 4.9e-07 28.6 0.1 0.043 12.3 0.0 3.1 3 0 0 3 3 3 2 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|294495024|ref|YP_003541517.1| - 0.00016 21.7 0.9 0.00051 20.0 0.6 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|294495024|ref|YP_003541517.1| - 0.00056 19.3 0.0 0.0011 18.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|294495024|ref|YP_003541517.1| - 0.00095 18.3 0.0 0.0017 17.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 cobW PF02492.14 gi|294495024|ref|YP_003541517.1| - 0.0015 18.0 0.0 0.0033 16.9 0.0 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|294495024|ref|YP_003541517.1| - 0.0021 18.1 1.1 0.039 14.0 0.4 2.7 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|294495024|ref|YP_003541517.1| - 0.0026 17.2 1.1 0.2 11.0 0.1 2.2 1 1 1 2 2 2 1 AAA-like domain AAA_18 PF13238.1 gi|294495024|ref|YP_003541517.1| - 0.0067 16.7 0.0 0.27 11.5 0.0 2.6 3 0 0 3 3 3 1 AAA domain SMC_N PF02463.14 gi|294495024|ref|YP_003541517.1| - 0.0078 15.4 1.2 0.19 10.9 0.8 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|294495024|ref|YP_003541517.1| - 0.0094 15.0 0.1 2.5 7.0 0.0 2.2 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|294495024|ref|YP_003541517.1| - 0.011 16.1 0.9 0.019 15.3 0.6 2.0 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|294495024|ref|YP_003541517.1| - 0.011 15.6 0.0 0.029 14.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|294495024|ref|YP_003541517.1| - 0.014 15.2 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|294495024|ref|YP_003541517.1| - 0.083 12.8 0.0 0.24 11.3 0.0 1.8 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|294495024|ref|YP_003541517.1| - 0.092 12.7 0.2 0.29 11.0 0.0 2.1 2 1 0 2 2 2 0 50S ribosome-binding GTPase G-alpha PF00503.15 gi|294495024|ref|YP_003541517.1| - 0.1 11.2 0.3 0.31 9.6 0.1 1.7 1 1 1 2 2 2 0 G-protein alpha subunit Arch_ATPase PF01637.13 gi|294495024|ref|YP_003541517.1| - 0.15 11.7 1.8 1.5 8.4 0.1 2.6 2 1 0 2 2 2 0 Archaeal ATPase NurA PF09376.5 gi|294495025|ref|YP_003541518.1| - 3.2e-24 85.7 0.0 4.1e-24 85.4 0.0 1.1 1 0 0 1 1 1 1 NurA domain AAA_10 PF12846.2 gi|294495026|ref|YP_003541519.1| - 2e-26 93.1 0.1 9e-26 91.0 0.1 1.8 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|294495026|ref|YP_003541519.1| - 3e-13 50.1 0.0 1e-12 48.3 0.0 1.8 1 1 1 2 2 2 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|294495026|ref|YP_003541519.1| - 2.2e-10 39.5 0.0 6.7e-07 28.0 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|294495026|ref|YP_003541519.1| - 1.5e-05 24.5 0.0 0.015 14.7 0.0 2.2 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|294495026|ref|YP_003541519.1| - 1.7e-05 24.9 0.0 0.0037 17.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|294495026|ref|YP_003541519.1| - 5.8e-05 23.3 0.1 0.41 10.8 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DEAD PF00270.24 gi|294495026|ref|YP_003541519.1| - 0.00019 20.9 0.0 0.27 10.7 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase TrwB_AAD_bind PF10412.4 gi|294495026|ref|YP_003541519.1| - 0.00071 18.3 0.0 0.0011 17.6 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.1 gi|294495026|ref|YP_003541519.1| - 0.0014 18.6 0.0 0.011 15.7 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain T2SE PF00437.15 gi|294495026|ref|YP_003541519.1| - 0.027 13.3 0.0 0.051 12.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein ResIII PF04851.10 gi|294495026|ref|YP_003541519.1| - 0.05 13.4 0.0 0.86 9.3 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DUF2075 PF09848.4 gi|294495026|ref|YP_003541519.1| - 0.062 12.2 0.0 1 8.2 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.17 gi|294495026|ref|YP_003541519.1| - 0.063 13.4 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Zot PF05707.7 gi|294495026|ref|YP_003541519.1| - 0.092 12.2 0.0 0.27 10.6 0.0 1.7 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_25 PF13481.1 gi|294495026|ref|YP_003541519.1| - 0.096 12.0 0.1 0.71 9.2 0.0 2.3 2 1 0 2 2 2 0 AAA domain PIF1 PF05970.9 gi|294495026|ref|YP_003541519.1| - 0.12 11.3 0.0 0.22 10.4 0.0 1.4 1 0 0 1 1 1 0 PIF1-like helicase AAA_17 PF13207.1 gi|294495026|ref|YP_003541519.1| - 0.12 13.1 0.0 0.44 11.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain HATPase_c PF02518.21 gi|294495027|ref|YP_003541520.1| - 1.4e-23 82.7 0.8 3.2e-23 81.5 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|294495027|ref|YP_003541520.1| - 2.1e-13 50.5 0.1 1.4e-12 47.8 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.6 gi|294495027|ref|YP_003541520.1| - 6.3e-09 35.8 0.0 1.6e-08 34.5 0.0 1.7 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|294495027|ref|YP_003541520.1| - 4.8e-08 32.8 0.0 1e-07 31.8 0.0 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|294495027|ref|YP_003541520.1| - 8.7e-07 28.9 0.0 1.6e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|294495027|ref|YP_003541520.1| - 9.8e-07 28.4 0.0 2.5e-06 27.1 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|294495027|ref|YP_003541520.1| - 1e-05 25.2 0.0 4.3e-05 23.2 0.0 2.2 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|294495027|ref|YP_003541520.1| - 0.00028 20.6 0.0 0.00055 19.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|294495027|ref|YP_003541520.1| - 0.0023 17.5 1.1 0.0079 15.8 0.0 2.4 2 1 0 2 2 2 1 GHKL domain DUF3303 PF11746.3 gi|294495028|ref|YP_003541521.1| - 1.5e-09 38.1 0.0 1.5e-09 38.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3303) RHH_1 PF01402.16 gi|294495030|ref|YP_003541523.1| - 0.016 15.1 0.0 0.023 14.5 0.0 1.4 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family AP_endonuc_2 PF01261.19 gi|294495031|ref|YP_003541524.1| - 1.6e-32 112.5 0.0 1.9e-32 112.2 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel RNA_binding PF01877.12 gi|294495032|ref|YP_003541525.1| - 8.2e-19 67.7 0.0 3.7e-17 62.4 0.0 2.1 1 1 0 1 1 1 1 RNA binding AAA_18 PF13238.1 gi|294495033|ref|YP_003541526.1| - 5.3e-15 55.8 0.6 7e-15 55.4 0.4 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|294495033|ref|YP_003541526.1| - 1.1e-11 45.5 0.2 1.4e-11 45.2 0.1 1.2 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|294495033|ref|YP_003541526.1| - 2.6e-06 27.3 0.1 5.1e-06 26.4 0.0 1.5 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|294495033|ref|YP_003541526.1| - 0.00036 19.6 0.3 0.00043 19.4 0.2 1.1 1 0 0 1 1 1 1 Zeta toxin ADK PF00406.17 gi|294495033|ref|YP_003541526.1| - 0.00096 19.0 0.3 0.0011 18.8 0.2 1.2 1 0 0 1 1 1 1 Adenylate kinase CoaE PF01121.15 gi|294495033|ref|YP_003541526.1| - 0.0044 16.4 0.3 0.21 11.0 0.0 2.2 2 0 0 2 2 2 1 Dephospho-CoA kinase GatB_Yqey PF02637.13 gi|294495033|ref|YP_003541526.1| - 0.053 13.2 0.2 1.2 8.7 0.0 2.1 1 1 0 2 2 2 0 GatB domain ABC_tran PF00005.22 gi|294495033|ref|YP_003541526.1| - 0.067 13.4 0.0 0.091 13.0 0.0 1.3 1 1 0 1 1 1 0 ABC transporter KTI12 PF08433.5 gi|294495033|ref|YP_003541526.1| - 0.092 11.9 0.3 0.16 11.1 0.1 1.8 1 1 0 1 1 1 0 Chromatin associated protein KTI12 T4-Gluco-transf PF09198.5 gi|294495033|ref|YP_003541526.1| - 0.15 11.3 1.0 0.4 10.0 0.1 1.9 1 1 1 2 2 2 0 Bacteriophage T4 beta-glucosyltransferase Dus PF01207.12 gi|294495034|ref|YP_003541527.1| - 2.7e-77 259.6 0.0 3.3e-77 259.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|294495034|ref|YP_003541527.1| - 6.3e-05 22.3 0.0 0.00022 20.5 0.0 1.7 1 1 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|294495034|ref|YP_003541527.1| - 9.6e-05 21.5 0.1 0.00037 19.6 0.0 1.9 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG Oxidored_FMN PF00724.15 gi|294495034|ref|YP_003541527.1| - 0.00058 18.9 0.0 0.00092 18.2 0.0 1.3 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family SOR_SNZ PF01680.12 gi|294495034|ref|YP_003541527.1| - 0.013 15.1 0.4 4.2 6.9 0.3 2.2 1 1 1 2 2 2 0 SOR/SNZ family PEP_mutase PF13714.1 gi|294495034|ref|YP_003541527.1| - 0.08 12.1 0.3 0.41 9.8 0.2 2.3 2 1 0 2 2 2 0 Phosphoenolpyruvate phosphomutase DHO_dh PF01180.16 gi|294495034|ref|YP_003541527.1| - 0.087 11.7 0.4 0.7 8.7 0.1 2.1 1 1 0 2 2 2 0 Dihydroorotate dehydrogenase NAGLU_N PF12971.2 gi|294495034|ref|YP_003541527.1| - 0.12 12.0 0.2 2.4 7.8 0.0 2.3 2 0 0 2 2 2 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain FMN_dh PF01070.13 gi|294495034|ref|YP_003541527.1| - 0.14 10.9 0.4 0.55 9.0 0.3 1.7 1 1 0 1 1 1 0 FMN-dependent dehydrogenase POR PF01558.13 gi|294495035|ref|YP_003541528.1| - 1.3e-34 119.5 0.3 1.6e-34 119.3 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|294495036|ref|YP_003541529.1| - 1.4e-15 56.1 13.3 9.8e-09 34.4 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294495036|ref|YP_003541529.1| - 2.9e-13 49.9 30.0 1.8e-07 31.4 7.7 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294495036|ref|YP_003541529.1| - 2.2e-12 46.5 20.8 2.6e-09 36.7 7.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294495036|ref|YP_003541529.1| - 5e-12 45.1 11.2 9.5e-07 28.4 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|294495036|ref|YP_003541529.1| - 1.7e-10 40.1 10.4 2.8e-05 23.7 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|294495036|ref|YP_003541529.1| - 1.2e-09 37.8 7.8 2e-09 37.1 5.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294495036|ref|YP_003541529.1| - 1.1e-08 35.1 9.0 1.7e-08 34.5 6.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294495036|ref|YP_003541529.1| - 3.7e-06 27.5 11.1 0.0002 22.0 1.6 2.3 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|294495036|ref|YP_003541529.1| - 2.6e-05 24.4 6.3 0.02 15.1 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|294495036|ref|YP_003541529.1| - 7.1e-05 23.2 11.8 0.0099 16.4 1.0 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|294495036|ref|YP_003541529.1| - 0.00012 22.0 11.8 0.0041 17.1 8.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294495036|ref|YP_003541529.1| - 0.0003 20.8 14.0 0.02 15.1 0.5 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|294495036|ref|YP_003541529.1| - 0.00064 20.0 8.4 0.043 14.2 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|294495036|ref|YP_003541529.1| - 0.00075 19.8 11.5 0.0045 17.3 0.4 2.5 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|294495036|ref|YP_003541529.1| - 0.015 15.2 3.1 0.019 14.8 2.1 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|294495036|ref|YP_003541529.1| - 0.018 15.5 16.8 0.18 12.4 4.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.14 gi|294495037|ref|YP_003541530.1| - 1.2e-66 224.4 0.8 1.7e-66 224.0 0.5 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|294495037|ref|YP_003541530.1| - 1.4e-08 34.7 0.1 2.7e-08 33.7 0.1 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|294495038|ref|YP_003541531.1| - 7.1e-27 93.8 0.1 1.2e-26 93.1 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HhH-GPD PF00730.20 gi|294495039|ref|YP_003541532.1| - 1.6e-21 76.6 0.0 2e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|294495039|ref|YP_003541532.1| - 6.1e-06 25.6 0.3 1.5e-05 24.3 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|294495039|ref|YP_003541532.1| - 0.0001 22.3 3.0 0.00017 21.6 2.1 1.3 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|294495039|ref|YP_003541532.1| - 0.034 14.3 0.0 0.42 10.8 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain IMS PF00817.15 gi|294495040|ref|YP_003541533.1| - 3.3e-42 143.7 0.1 5.2e-42 143.1 0.0 1.3 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|294495040|ref|YP_003541533.1| - 1.6e-13 50.7 0.7 3.5e-13 49.6 0.5 1.5 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|294495040|ref|YP_003541533.1| - 0.0024 17.8 0.0 0.0067 16.4 0.0 1.8 1 0 0 1 1 1 1 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|294495040|ref|YP_003541533.1| - 0.0087 15.5 0.0 0.02 14.4 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|294495040|ref|YP_003541533.1| - 0.014 15.3 0.0 0.029 14.2 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus DUF1805 PF08827.6 gi|294495040|ref|YP_003541533.1| - 0.014 15.1 0.0 1.4 8.7 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1805) DNase-RNase PF02577.9 gi|294495041|ref|YP_003541534.1| - 5.2e-40 135.8 0.1 6.2e-40 135.5 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease DUF2738 PF10927.3 gi|294495041|ref|YP_003541534.1| - 0.098 11.6 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2738) Peptidase_M23 PF01551.17 gi|294495042|ref|YP_003541535.1| - 7e-17 61.2 0.0 1e-16 60.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M23 Hydantoinase_B PF02538.9 gi|294495043|ref|YP_003541536.1| - 1e-204 680.6 0.1 1.5e-204 680.1 0.1 1.2 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|294495043|ref|YP_003541536.1| - 9.1e-107 356.4 1.1 1.4e-106 355.8 0.0 1.9 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|294495043|ref|YP_003541536.1| - 2.1e-62 209.7 0.2 2.2e-60 203.1 0.0 2.9 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region Skp1 PF01466.14 gi|294495043|ref|YP_003541536.1| - 0.016 15.2 0.2 0.75 9.8 0.0 2.7 2 0 0 2 2 2 0 Skp1 family, dimerisation domain DUF3231 PF11553.3 gi|294495043|ref|YP_003541536.1| - 0.13 11.7 0.3 0.37 10.2 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) PAP2 PF01569.16 gi|294495044|ref|YP_003541537.1| - 4.2e-19 68.4 14.2 1.4e-18 66.7 9.8 1.7 1 1 0 1 1 1 1 PAP2 superfamily PAP2_3 PF14378.1 gi|294495044|ref|YP_003541537.1| - 9.3e-07 28.5 1.8 9.3e-07 28.5 1.3 1.5 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.1 gi|294495044|ref|YP_003541537.1| - 0.00045 20.4 0.6 0.00045 20.4 0.4 2.1 2 1 0 2 2 2 1 PAP2 superfamily C-terminal Bax1-I PF01027.15 gi|294495044|ref|YP_003541537.1| - 0.034 13.7 16.7 0.01 15.4 7.1 2.0 1 1 1 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 DUF212 PF02681.9 gi|294495044|ref|YP_003541537.1| - 0.15 11.7 3.6 1.1 8.9 0.9 2.1 1 1 1 2 2 2 0 Divergent PAP2 family Glucos_trans_II PF14264.1 gi|294495044|ref|YP_003541537.1| - 0.24 10.3 14.0 0.045 12.7 1.3 2.1 1 1 0 2 2 2 0 Glucosyl transferase GtrII GATase_7 PF13537.1 gi|294495045|ref|YP_003541538.1| - 7.5e-26 90.2 0.0 1.3e-25 89.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|294495045|ref|YP_003541538.1| - 1.5e-25 89.6 0.0 3.1e-25 88.6 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|294495045|ref|YP_003541538.1| - 4.2e-24 84.9 0.0 2.2e-17 62.8 0.0 3.0 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|294495045|ref|YP_003541538.1| - 1.4e-11 44.2 0.3 2.9e-11 43.1 0.2 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|294495045|ref|YP_003541538.1| - 1.2e-08 33.9 0.0 1.3e-07 30.6 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferases class-II LSM PF01423.17 gi|294495046|ref|YP_003541539.1| - 1.2e-21 76.0 0.5 1.3e-21 75.9 0.3 1.0 1 0 0 1 1 1 1 LSM domain Phos_pyr_kin PF08543.7 gi|294495047|ref|YP_003541540.1| - 1.4e-79 266.7 0.3 1.9e-79 266.3 0.2 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|294495047|ref|YP_003541540.1| - 2.7e-63 212.3 0.0 4.3e-63 211.7 0.0 1.3 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|294495047|ref|YP_003541540.1| - 9.4e-11 41.3 0.1 1.4e-10 40.7 0.1 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|294495047|ref|YP_003541540.1| - 0.045 13.0 0.0 0.083 12.1 0.0 1.5 1 0 0 1 1 1 0 Carbohydrate kinase MS_channel PF00924.13 gi|294495048|ref|YP_003541541.1| - 7.6e-21 74.3 2.6 7.6e-21 74.3 1.8 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel Allexi_40kDa PF05549.6 gi|294495048|ref|YP_003541541.1| - 0.1 11.9 0.8 0.19 11.0 0.6 1.4 1 0 0 1 1 1 0 Allexivirus 40kDa protein Sec34 PF04136.10 gi|294495048|ref|YP_003541541.1| - 0.59 9.8 4.7 2.3 7.9 0.8 2.4 2 0 0 2 2 2 0 Sec34-like family PRA1 PF03208.14 gi|294495048|ref|YP_003541541.1| - 5.5 6.3 8.3 9.5 5.5 5.8 1.3 1 0 0 1 1 1 0 PRA1 family protein MarC PF01914.12 gi|294495049|ref|YP_003541542.1| - 1.5e-60 203.8 9.9 1.7e-60 203.6 6.8 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein DUF1772 PF08592.6 gi|294495049|ref|YP_003541542.1| - 0.16 11.6 5.9 1.2 8.8 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1772) DUF3810 PF12725.2 gi|294495049|ref|YP_003541542.1| - 7 5.4 8.6 1 8.1 1.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3810) Usp PF00582.21 gi|294495050|ref|YP_003541543.1| - 3.5e-28 98.5 0.1 9.4e-27 93.9 0.1 2.0 1 1 0 1 1 1 1 Universal stress protein family tRNA-synt_1 PF00133.17 gi|294495051|ref|YP_003541544.1| - 4.6e-130 434.4 4.6 2.9e-129 431.7 3.2 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|294495051|ref|YP_003541544.1| - 6.6e-40 136.3 0.3 1.2e-39 135.4 0.2 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|294495051|ref|YP_003541544.1| - 2.6e-23 82.3 0.8 9.9e-12 44.1 0.0 3.5 3 1 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|294495051|ref|YP_003541544.1| - 5.3e-05 22.6 0.1 0.0013 18.0 0.0 2.6 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|294495051|ref|YP_003541544.1| - 0.00021 20.5 0.0 0.033 13.3 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.14 gi|294495051|ref|YP_003541544.1| - 0.0048 15.7 0.0 2.8 6.6 0.0 3.3 3 0 0 3 3 3 1 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|294495051|ref|YP_003541544.1| - 0.0057 15.3 0.0 0.17 10.5 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) DZR PF12773.2 gi|294495051|ref|YP_003541544.1| - 0.5 10.2 3.4 5.5 6.8 0.2 3.1 3 0 0 3 3 3 0 Double zinc ribbon PRA1 PF03208.14 gi|294495052|ref|YP_003541545.1| - 0.74 9.1 5.7 0.88 8.8 3.9 1.1 1 0 0 1 1 1 0 PRA1 family protein Response_reg PF00072.19 gi|294495053|ref|YP_003541546.1| - 2e-28 98.6 2.2 5e-28 97.3 1.5 1.7 1 0 0 1 1 1 1 Response regulator receiver domain tRNA-synt_2c PF01411.14 gi|294495054|ref|YP_003541547.1| - 5.1e-127 424.4 0.0 7.5e-127 423.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|294495054|ref|YP_003541547.1| - 6.8e-12 45.0 0.8 1.5e-11 43.9 0.6 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|294495054|ref|YP_003541547.1| - 4.8e-08 32.5 4.8 1.3e-07 31.2 3.4 1.7 1 0 0 1 1 1 1 DHHA1 domain P5CR_dimer PF14748.1 gi|294495054|ref|YP_003541547.1| - 0.069 13.1 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 Pyrroline-5-carboxylate reductase dimerisation BCCT PF02028.12 gi|294495056|ref|YP_003541549.1| - 4.7e-190 631.9 47.6 5.3e-190 631.7 33.0 1.0 1 0 0 1 1 1 1 BCCT family transporter SurE PF01975.12 gi|294495058|ref|YP_003541551.1| - 2.4e-58 196.6 0.0 3e-58 196.3 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE AAA_13 PF13166.1 gi|294495060|ref|YP_003541553.1| - 0.00018 20.1 7.0 0.00018 20.1 4.9 3.0 1 1 2 3 3 3 1 AAA domain Baculo_PEP_C PF04513.7 gi|294495060|ref|YP_003541553.1| - 0.0013 18.5 15.2 0.13 12.1 0.2 4.4 3 1 1 5 5 5 2 Baculovirus polyhedron envelope protein, PEP, C terminus GrpE PF01025.14 gi|294495060|ref|YP_003541553.1| - 0.0048 16.4 3.2 0.0048 16.4 2.2 3.9 2 1 1 3 3 3 1 GrpE Bcr-Abl_Oligo PF09036.5 gi|294495060|ref|YP_003541553.1| - 0.0069 16.3 1.4 0.14 12.1 0.0 3.3 4 0 0 4 4 3 1 Bcr-Abl oncoprotein oligomerisation domain IncA PF04156.9 gi|294495060|ref|YP_003541553.1| - 0.007 15.9 5.8 0.007 15.9 4.0 3.2 2 2 0 2 2 2 1 IncA protein DUF4446 PF14584.1 gi|294495060|ref|YP_003541553.1| - 0.15 11.8 14.6 0.41 10.4 0.3 3.6 3 1 1 4 4 4 0 Protein of unknown function (DUF4446) Laminin_II PF06009.7 gi|294495060|ref|YP_003541553.1| - 0.16 11.7 20.8 0.25 11.0 0.6 4.0 3 1 0 4 4 4 0 Laminin Domain II Uds1 PF15456.1 gi|294495060|ref|YP_003541553.1| - 0.2 11.6 17.8 0.31 11.0 5.3 2.9 2 1 1 3 3 3 0 Up-regulated During Septation NPV_P10 PF05531.7 gi|294495060|ref|YP_003541553.1| - 0.25 11.6 18.8 6.1 7.1 3.1 5.1 2 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein Spore_III_AB PF09548.5 gi|294495060|ref|YP_003541553.1| - 0.31 10.7 0.1 0.31 10.7 0.0 3.2 2 1 1 3 3 3 0 Stage III sporulation protein AB (spore_III_AB) Helicase_IV_N PF12462.3 gi|294495060|ref|YP_003541553.1| - 0.49 10.0 3.8 0.69 9.5 0.2 2.5 2 0 0 2 2 2 0 DNA helicase IV / RNA helicase N terminal V_ATPase_I PF01496.14 gi|294495060|ref|YP_003541553.1| - 0.54 8.0 14.6 1.2 6.9 10.1 1.7 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF489 PF04356.7 gi|294495060|ref|YP_003541553.1| - 0.77 9.3 11.7 0.25 10.8 2.9 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF489) DUF342 PF03961.8 gi|294495060|ref|YP_003541553.1| - 0.91 7.8 20.8 0.5 8.7 2.8 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF342) DUF1664 PF07889.7 gi|294495060|ref|YP_003541553.1| - 1.6 8.5 20.8 1.3 8.7 0.5 4.9 3 2 0 5 5 5 0 Protein of unknown function (DUF1664) CENP-H PF05837.7 gi|294495060|ref|YP_003541553.1| - 2.3 8.4 20.8 0.32 11.2 1.5 4.2 2 2 2 4 4 4 0 Centromere protein H (CENP-H) DASH_Dad3 PF08656.5 gi|294495060|ref|YP_003541553.1| - 2.4 7.8 15.9 1.9 8.2 0.0 4.6 5 1 0 5 5 5 0 DASH complex subunit Dad3 Reo_sigmaC PF04582.7 gi|294495060|ref|YP_003541553.1| - 2.9 6.9 11.4 0.25 10.5 1.0 2.8 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Cauli_DNA-bind PF03310.8 gi|294495060|ref|YP_003541553.1| - 3.2 7.6 9.3 1.3 8.9 0.1 3.6 3 0 0 3 3 3 0 Caulimovirus DNA-binding protein FlaC_arch PF05377.6 gi|294495060|ref|YP_003541553.1| - 3.9 7.4 17.7 0.33 10.8 0.4 5.1 3 1 2 5 5 4 0 Flagella accessory protein C (FlaC) Corona_S2 PF01601.11 gi|294495060|ref|YP_003541553.1| - 5.2 5.0 10.6 3.8 5.5 2.2 2.9 2 1 1 3 3 3 0 Coronavirus S2 glycoprotein OmpH PF03938.9 gi|294495060|ref|YP_003541553.1| - 6.1 6.7 16.0 0.77 9.6 0.5 2.7 1 1 0 2 2 2 0 Outer membrane protein (OmpH-like) cwf21 PF08312.7 gi|294495060|ref|YP_003541553.1| - 6.5 6.6 10.6 3.1 7.7 2.2 3.1 2 0 0 2 2 2 0 cwf21 domain Radical_SAM PF04055.16 gi|294495061|ref|YP_003541554.1| - 5.7e-32 111.1 0.2 5.9e-31 107.8 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|294495061|ref|YP_003541554.1| - 4.9e-25 87.6 0.7 6.6e-25 87.2 0.1 1.5 2 0 0 2 2 2 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.1 gi|294495061|ref|YP_003541554.1| - 7.3e-09 35.6 0.0 1.7e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|294495061|ref|YP_003541554.1| - 8.1e-09 35.7 0.0 2.5e-08 34.1 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain HIPIP PF01355.12 gi|294495061|ref|YP_003541554.1| - 0.026 14.6 0.0 0.052 13.6 0.0 1.4 1 0 0 1 1 1 0 High potential iron-sulfur protein CytoC_RC PF02276.13 gi|294495061|ref|YP_003541554.1| - 0.033 13.3 0.1 0.053 12.6 0.1 1.2 1 0 0 1 1 1 0 Photosynthetic reaction centre cytochrome C subunit GATase_3 PF07685.9 gi|294495062|ref|YP_003541555.1| - 6.4e-32 110.3 0.2 9.3e-32 109.8 0.1 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|294495062|ref|YP_003541555.1| - 2.5e-25 89.0 0.0 4.2e-25 88.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|294495062|ref|YP_003541555.1| - 1.4e-21 77.0 0.1 1.1e-12 48.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain DUF4225 PF13988.1 gi|294495062|ref|YP_003541555.1| - 0.0094 15.4 0.2 0.02 14.3 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF4225) DUF1611 PF07755.6 gi|294495062|ref|YP_003541555.1| - 0.044 12.4 0.1 0.069 11.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1611) MipZ PF09140.6 gi|294495062|ref|YP_003541555.1| - 0.056 12.5 0.1 0.084 11.9 0.1 1.2 1 0 0 1 1 1 0 ATPase MipZ CTP_synth_N PF06418.9 gi|294495062|ref|YP_003541555.1| - 0.07 12.2 0.1 0.11 11.6 0.1 1.2 1 0 0 1 1 1 0 CTP synthase N-terminus Peptidase_S51 PF03575.12 gi|294495062|ref|YP_003541555.1| - 0.14 11.8 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S51 Asn_synthase PF00733.16 gi|294495063|ref|YP_003541556.1| - 5.8e-07 29.2 0.0 8.1e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|294495063|ref|YP_003541556.1| - 6.3e-05 22.5 0.0 9.4e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) NAD_synthase PF02540.12 gi|294495063|ref|YP_003541556.1| - 0.00017 20.5 0.0 0.00024 20.0 0.0 1.3 1 0 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.15 gi|294495063|ref|YP_003541556.1| - 0.016 14.6 0.0 0.49 9.8 0.0 2.5 1 1 0 1 1 1 0 PP-loop family QueC PF06508.8 gi|294495063|ref|YP_003541556.1| - 0.069 12.4 0.0 0.43 9.8 0.0 2.1 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC DUF208 PF02677.9 gi|294495063|ref|YP_003541556.1| - 0.12 12.0 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized BCR, COG1636 ThiF PF00899.16 gi|294495064|ref|YP_003541557.1| - 6.9e-48 161.9 0.2 9.3e-48 161.5 0.1 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|294495064|ref|YP_003541557.1| - 6.6e-16 57.6 0.1 1.1e-15 56.9 0.1 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain Saccharop_dh PF03435.13 gi|294495064|ref|YP_003541557.1| - 5.1e-05 22.4 0.1 6.5e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|294495064|ref|YP_003541557.1| - 0.059 12.5 0.0 0.8 8.8 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|294495064|ref|YP_003541557.1| - 0.06 12.9 1.8 0.57 9.7 1.3 2.0 1 1 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_7 PF13241.1 gi|294495064|ref|YP_003541557.1| - 0.067 13.4 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|294495064|ref|YP_003541557.1| - 0.07 13.2 0.2 0.28 11.3 0.1 2.0 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NifU_N PF01592.11 gi|294495065|ref|YP_003541558.1| - 5.2e-52 175.1 0.2 5.8e-52 174.9 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain CO_deh_flav_C PF03450.12 gi|294495065|ref|YP_003541558.1| - 0.017 15.0 0.1 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 CO dehydrogenase flavoprotein C-terminal domain Aminotran_5 PF00266.14 gi|294495066|ref|YP_003541559.1| - 1e-89 300.8 0.1 1.3e-89 300.5 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|294495066|ref|YP_003541559.1| - 8.9e-08 31.6 0.1 1.5e-07 30.9 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|294495066|ref|YP_003541559.1| - 0.00017 20.7 0.0 0.0003 19.9 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|294495066|ref|YP_003541559.1| - 0.00025 20.1 0.0 0.00062 18.8 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II Pyridoxal_deC PF00282.14 gi|294495066|ref|YP_003541559.1| - 0.0036 15.8 0.0 0.0055 15.2 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain HTH_23 PF13384.1 gi|294495067|ref|YP_003541560.1| - 0.0003 20.3 0.0 0.00059 19.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_3 PF01381.17 gi|294495067|ref|YP_003541560.1| - 0.00038 20.2 0.0 0.0006 19.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_38 PF13936.1 gi|294495067|ref|YP_003541560.1| - 0.0005 19.5 0.0 0.00085 18.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|294495067|ref|YP_003541560.1| - 0.00057 19.6 0.0 0.0017 18.1 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|294495067|ref|YP_003541560.1| - 0.00097 19.2 0.0 0.0019 18.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2811 PF10929.3 gi|294495067|ref|YP_003541560.1| - 0.0014 18.5 0.0 0.0051 16.7 0.0 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF2811) HTH_24 PF13412.1 gi|294495067|ref|YP_003541560.1| - 0.0017 17.6 0.0 0.0028 16.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|294495067|ref|YP_003541560.1| - 0.0021 17.6 0.0 0.0044 16.6 0.0 1.5 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|294495067|ref|YP_003541560.1| - 0.0043 16.4 0.0 0.0087 15.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.15 gi|294495067|ref|YP_003541560.1| - 0.012 15.2 0.0 0.28 10.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|294495067|ref|YP_003541560.1| - 0.016 14.9 0.0 0.054 13.2 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|294495067|ref|YP_003541560.1| - 0.018 14.5 0.0 0.054 13.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease HTH_28 PF13518.1 gi|294495067|ref|YP_003541560.1| - 0.022 14.7 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|294495067|ref|YP_003541560.1| - 0.023 13.8 0.0 0.04 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_7 PF02796.10 gi|294495067|ref|YP_003541560.1| - 0.03 14.1 0.0 0.046 13.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_10 PF04967.7 gi|294495067|ref|YP_003541560.1| - 0.047 13.2 0.0 0.16 11.6 0.0 1.9 1 1 1 2 2 2 0 HTH DNA binding domain HTH_20 PF12840.2 gi|294495067|ref|YP_003541560.1| - 0.057 13.2 0.1 2 8.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|294495067|ref|YP_003541560.1| - 0.063 12.8 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Cro PF09048.5 gi|294495067|ref|YP_003541560.1| - 0.07 12.7 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Cro DUF2481 PF10654.4 gi|294495067|ref|YP_003541560.1| - 0.075 12.7 0.0 0.091 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) Sigma70_r4 PF04545.11 gi|294495067|ref|YP_003541560.1| - 0.1 11.8 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 CENP-B_N PF04218.8 gi|294495067|ref|YP_003541560.1| - 0.13 11.7 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain DUF4393 PF14337.1 gi|294495067|ref|YP_003541560.1| - 0.15 11.5 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) SLA_LP_auto_ag PF05889.8 gi|294495068|ref|YP_003541561.1| - 3.8e-22 78.2 0.0 6.6e-22 77.5 0.0 1.4 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|294495068|ref|YP_003541561.1| - 1.2e-17 63.6 0.0 1.8e-17 63.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|294495068|ref|YP_003541561.1| - 8.7e-07 28.3 0.0 1.2e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|294495068|ref|YP_003541561.1| - 3.9e-05 22.7 0.0 9e-05 21.5 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|294495068|ref|YP_003541561.1| - 0.003 16.6 0.0 0.0041 16.2 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|294495068|ref|YP_003541561.1| - 0.015 13.5 0.0 0.037 12.2 0.0 1.6 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme Cys_Met_Meta_PP PF01053.15 gi|294495069|ref|YP_003541562.1| - 5e-142 472.7 0.0 5.7e-142 472.5 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|294495069|ref|YP_003541562.1| - 7e-12 45.0 0.1 1.1e-11 44.4 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|294495069|ref|YP_003541562.1| - 4.4e-05 22.4 0.1 8e-05 21.5 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|294495069|ref|YP_003541562.1| - 0.00049 19.3 0.0 0.0012 18.0 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|294495069|ref|YP_003541562.1| - 0.00079 18.4 0.0 0.0013 17.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II GDC-P PF02347.11 gi|294495069|ref|YP_003541562.1| - 0.041 12.5 0.0 0.059 12.0 0.0 1.1 1 0 0 1 1 1 0 Glycine cleavage system P-protein SLA_LP_auto_ag PF05889.8 gi|294495069|ref|YP_003541562.1| - 0.1 11.0 0.0 0.16 10.4 0.0 1.2 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) CBS PF00571.23 gi|294495070|ref|YP_003541563.1| - 4.4e-21 74.4 0.3 1.3e-09 37.6 0.0 2.4 2 0 0 2 2 2 2 CBS domain Abhydrolase_1 PF00561.15 gi|294495070|ref|YP_003541563.1| - 4.2e-18 65.7 0.0 8.4e-18 64.7 0.0 1.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|294495070|ref|YP_003541563.1| - 2.2e-07 31.0 0.0 3.5e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S29 PF02907.10 gi|294495070|ref|YP_003541563.1| - 0.051 13.0 0.1 0.52 9.8 0.0 2.1 1 1 1 2 2 2 0 Hepatitis C virus NS3 protease Abhydrolase_5 PF12695.2 gi|294495070|ref|YP_003541563.1| - 0.053 13.2 0.0 0.23 11.1 0.0 2.3 1 1 0 1 1 1 0 Alpha/beta hydrolase family DNA_primase_lrg PF04104.9 gi|294495071|ref|YP_003541564.1| - 4.8e-38 130.9 0.7 1.2e-37 129.6 0.5 1.5 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit PCNA_N PF00705.13 gi|294495072|ref|YP_003541565.1| - 9.7e-17 60.6 0.3 4.7e-16 58.4 0.1 1.9 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|294495072|ref|YP_003541565.1| - 3.2e-09 36.7 0.0 1.1e-08 34.9 0.0 2.0 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|294495072|ref|YP_003541565.1| - 2e-05 23.8 0.0 6.7e-05 22.1 0.0 1.7 1 1 1 2 2 2 1 Rad9 TFIIS_C PF01096.13 gi|294495073|ref|YP_003541566.1| - 1.3e-19 69.5 17.4 2.2e-19 68.7 4.3 3.2 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|294495073|ref|YP_003541566.1| - 1.2e-10 40.8 18.1 5.2e-10 38.8 3.3 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|294495073|ref|YP_003541566.1| - 3.5e-06 26.7 6.4 0.0044 16.8 1.0 2.2 2 0 0 2 2 2 2 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|294495073|ref|YP_003541566.1| - 1e-05 25.2 9.4 0.00032 20.4 0.5 2.6 2 1 0 2 2 2 2 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|294495073|ref|YP_003541566.1| - 0.00018 21.1 9.4 0.041 13.5 1.5 2.4 1 1 1 2 2 2 2 Putative transposase DNA-binding domain DUF2387 PF09526.5 gi|294495073|ref|YP_003541566.1| - 0.00038 20.2 12.1 0.017 15.0 0.2 2.7 2 1 0 2 2 2 2 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|294495073|ref|YP_003541566.1| - 0.0013 17.8 12.9 0.0035 16.5 1.1 3.2 3 0 0 3 3 3 2 zinc-ribbon domain DUF3797 PF12677.2 gi|294495073|ref|YP_003541566.1| - 0.0048 16.4 7.5 0.057 13.0 0.1 3.7 4 0 0 4 4 4 1 Domain of unknown function (DUF3797) PhnA_Zn_Ribbon PF08274.7 gi|294495073|ref|YP_003541566.1| - 0.0071 16.0 7.3 0.091 12.5 0.3 3.2 3 0 0 3 3 3 1 PhnA Zinc-Ribbon zinc_ribbon_5 PF13719.1 gi|294495073|ref|YP_003541566.1| - 0.016 14.7 15.3 0.42 10.2 0.3 4.2 3 1 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|294495073|ref|YP_003541566.1| - 0.036 13.7 16.2 0.45 10.2 0.4 4.2 3 1 0 3 3 3 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|294495073|ref|YP_003541566.1| - 0.058 13.7 9.0 0.071 13.4 0.3 2.8 2 1 0 2 2 2 0 Restriction alleviation protein Lar zinc-ribbons_6 PF07191.7 gi|294495073|ref|YP_003541566.1| - 0.069 12.9 0.6 0.069 12.9 0.4 2.7 2 1 1 3 3 3 0 zinc-ribbons HypA PF01155.14 gi|294495073|ref|YP_003541566.1| - 0.12 12.1 10.4 0.16 11.6 0.8 2.9 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family zf-C4pol PF14260.1 gi|294495073|ref|YP_003541566.1| - 0.18 11.8 3.7 1.9 8.5 0.2 2.2 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta Stc1 PF12898.2 gi|294495073|ref|YP_003541566.1| - 0.22 11.6 5.7 1.7 8.7 3.5 2.4 1 1 0 1 1 1 0 Stc1 domain zinc_ribbon_2 PF13240.1 gi|294495073|ref|YP_003541566.1| - 0.22 11.0 18.4 2.4 7.7 0.1 4.0 3 1 0 3 3 3 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|294495073|ref|YP_003541566.1| - 0.24 11.1 7.0 0.87 9.3 0.6 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.5 gi|294495073|ref|YP_003541566.1| - 0.36 10.8 16.8 0.74 9.8 0.0 4.2 3 1 0 4 4 4 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|294495073|ref|YP_003541566.1| - 0.43 10.6 9.7 10 6.2 0.0 3.8 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_RNApol_7kD PF03604.8 gi|294495073|ref|YP_003541566.1| - 0.47 9.9 7.8 2.1 7.8 0.6 3.2 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.7 gi|294495073|ref|YP_003541566.1| - 0.47 9.8 15.7 0.72 9.2 1.0 3.0 3 1 0 3 3 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|294495073|ref|YP_003541566.1| - 0.57 9.9 10.3 2.3 8.0 0.0 3.7 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Baculo_LEF5_C PF11792.3 gi|294495073|ref|YP_003541566.1| - 0.72 9.2 0.0 0.72 9.2 0.0 3.2 4 0 0 4 4 4 0 Baculoviridae late expression factor 5 C-terminal domain IBR PF01485.16 gi|294495073|ref|YP_003541566.1| - 0.87 9.5 12.8 0.95 9.3 1.3 3.1 2 1 0 2 2 2 0 IBR domain DUF2318 PF10080.4 gi|294495073|ref|YP_003541566.1| - 1.4 8.7 5.0 2 8.2 0.3 2.5 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) zf-RING_3 PF14369.1 gi|294495073|ref|YP_003541566.1| - 1.4 8.9 0.1 1.4 8.9 0.0 3.2 3 1 0 3 3 3 0 zinc-finger PolC_DP2 PF03833.8 gi|294495073|ref|YP_003541566.1| - 1.6 6.2 5.9 0.34 8.5 0.6 1.8 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 zf-DNA_Pol PF08996.5 gi|294495073|ref|YP_003541566.1| - 1.9 7.8 8.3 0.22 10.8 0.3 2.4 1 1 0 2 2 2 0 DNA Polymerase alpha zinc finger Ogr_Delta PF04606.7 gi|294495073|ref|YP_003541566.1| - 2.3 7.9 13.0 0.15 11.7 1.1 3.0 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger zf-H2C2_2 PF13465.1 gi|294495073|ref|YP_003541566.1| - 2.6 8.4 15.3 2.9 8.3 0.4 4.0 4 0 0 4 4 4 0 Zinc-finger double domain Ribosomal_S27e PF01667.12 gi|294495073|ref|YP_003541566.1| - 3.1 7.3 8.2 26 4.4 0.1 3.6 3 1 1 4 4 4 0 Ribosomal protein S27 Rubredoxin PF00301.15 gi|294495073|ref|YP_003541566.1| - 4.3 7.2 15.1 9.9 6.1 0.2 4.1 3 1 0 4 4 4 0 Rubredoxin zf-RING_4 PF14570.1 gi|294495073|ref|YP_003541566.1| - 4.7 6.8 12.9 6.5 6.4 0.1 3.6 3 1 0 3 3 3 0 RING/Ubox like zinc-binding domain zf-C4_Topoisom PF01396.14 gi|294495073|ref|YP_003541566.1| - 5 6.7 13.8 3 7.4 0.4 3.9 5 0 0 5 5 4 0 Topoisomerase DNA binding C4 zinc finger DUF2072 PF09845.4 gi|294495073|ref|YP_003541566.1| - 5.1 7.0 10.7 6.4 6.7 1.0 2.7 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) zf-AN1 PF01428.11 gi|294495073|ref|YP_003541566.1| - 5.4 6.9 10.5 11 5.9 1.5 3.1 3 0 0 3 3 3 0 AN1-like Zinc finger GFA PF04828.9 gi|294495073|ref|YP_003541566.1| - 6.9 6.6 10.0 3.2 7.7 0.4 2.9 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme C1_1 PF00130.17 gi|294495073|ref|YP_003541566.1| - 7.4 6.3 10.5 8 6.2 1.4 2.7 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Auto_anti-p27 PF06677.7 gi|294495073|ref|YP_003541566.1| - 8.2 6.2 16.8 0.12 12.1 3.5 2.5 3 0 0 3 3 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) NUDIX PF00293.23 gi|294495074|ref|YP_003541567.1| - 8.2e-19 67.5 0.0 1e-18 67.2 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain Exosortase_EpsH PF09721.5 gi|294495075|ref|YP_003541568.1| - 8e-46 156.3 22.2 9.7e-46 156.1 15.4 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) PS_Dcarbxylase PF02666.10 gi|294495076|ref|YP_003541569.1| - 1.3e-30 106.2 0.7 5.6e-26 91.0 0.0 2.1 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase RnfC_N PF13375.1 gi|294495076|ref|YP_003541569.1| - 1.8e-06 27.5 0.1 0.002 17.8 0.0 3.2 1 1 1 3 3 3 2 RnfC Barrel sandwich hybrid domain Apocytochr_F_C PF01333.14 gi|294495076|ref|YP_003541569.1| - 0.0085 15.9 0.0 1.4 8.8 0.0 2.7 1 1 1 2 2 2 1 Apocytochrome F, C-terminal Peptidase_M23 PF01551.17 gi|294495076|ref|YP_003541569.1| - 0.064 13.3 0.1 3.5 7.7 0.0 3.0 1 1 1 2 2 2 0 Peptidase family M23 PsbT PF01405.12 gi|294495076|ref|YP_003541569.1| - 6.5 6.4 8.2 0.17 11.5 1.1 1.8 2 0 0 2 2 2 0 Photosystem II reaction centre T protein CDP-OH_P_transf PF01066.16 gi|294495077|ref|YP_003541570.1| - 3.1e-11 43.4 23.7 3.7e-09 36.7 16.4 2.8 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase AAA_2 PF07724.9 gi|294495078|ref|YP_003541571.1| - 3.1e-60 202.9 0.3 5.1e-56 189.2 0.0 3.2 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA PF00004.24 gi|294495078|ref|YP_003541571.1| - 1.2e-25 90.2 1.5 5.5e-12 46.0 0.0 3.3 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) Clp_N PF02861.15 gi|294495078|ref|YP_003541571.1| - 2.8e-25 88.0 0.8 1.1e-12 47.6 0.1 3.1 2 0 0 2 2 2 2 Clp amino terminal domain ClpB_D2-small PF10431.4 gi|294495078|ref|YP_003541571.1| - 4.2e-23 81.0 3.2 5.9e-23 80.5 0.5 2.8 2 0 0 2 2 1 1 C-terminal, D2-small domain, of ClpB protein AAA_5 PF07728.9 gi|294495078|ref|YP_003541571.1| - 7.2e-18 64.6 0.6 2.1e-12 46.9 0.0 4.2 4 0 0 4 4 4 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|294495078|ref|YP_003541571.1| - 4.5e-13 49.5 4.8 4.6e-05 23.4 0.0 4.9 4 2 2 6 6 5 2 AAA ATPase domain AAA_22 PF13401.1 gi|294495078|ref|YP_003541571.1| - 2.7e-09 37.2 5.6 0.0017 18.4 0.0 4.5 5 1 0 5 5 3 2 AAA domain IstB_IS21 PF01695.12 gi|294495078|ref|YP_003541571.1| - 1.8e-08 33.9 0.1 0.0023 17.3 0.0 3.3 3 0 0 3 3 3 2 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|294495078|ref|YP_003541571.1| - 5.9e-08 32.3 0.3 7.4e-05 22.2 0.0 2.8 3 0 0 3 3 2 2 Sigma-54 interaction domain AAA_14 PF13173.1 gi|294495078|ref|YP_003541571.1| - 1.2e-07 31.6 0.0 0.0027 17.6 0.0 3.2 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|294495078|ref|YP_003541571.1| - 2.5e-06 27.2 0.0 0.015 15.0 0.0 2.9 3 0 0 3 3 2 2 NACHT domain Mg_chelatase PF01078.16 gi|294495078|ref|YP_003541571.1| - 6.9e-06 25.3 0.2 0.061 12.4 0.0 3.5 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|294495078|ref|YP_003541571.1| - 1.4e-05 25.2 0.0 0.16 12.1 0.0 3.2 3 0 0 3 3 3 2 RNA helicase Arch_ATPase PF01637.13 gi|294495078|ref|YP_003541571.1| - 2.1e-05 24.3 11.3 0.2 11.3 0.1 5.2 3 2 1 4 4 3 2 Archaeal ATPase AAA_17 PF13207.1 gi|294495078|ref|YP_003541571.1| - 2.3e-05 25.2 13.3 0.00085 20.1 0.2 5.2 4 2 0 4 4 3 1 AAA domain DUF258 PF03193.11 gi|294495078|ref|YP_003541571.1| - 0.00013 21.1 0.0 0.45 9.6 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|294495078|ref|YP_003541571.1| - 0.00025 20.7 0.0 0.38 10.5 0.0 2.7 2 0 0 2 2 2 1 Part of AAA domain Miro PF08477.8 gi|294495078|ref|YP_003541571.1| - 0.0003 21.2 0.4 0.37 11.3 0.0 3.8 3 1 0 3 3 3 1 Miro-like protein ABC_tran PF00005.22 gi|294495078|ref|YP_003541571.1| - 0.00052 20.3 3.2 0.13 12.5 0.0 4.1 4 0 0 4 4 4 1 ABC transporter AAA_18 PF13238.1 gi|294495078|ref|YP_003541571.1| - 0.00053 20.2 13.4 0.009 16.3 0.0 4.9 6 0 0 6 6 4 2 AAA domain RuvB_N PF05496.7 gi|294495078|ref|YP_003541571.1| - 0.00063 18.8 1.3 0.04 12.9 0.0 3.3 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus DNA_pol3_delta2 PF13177.1 gi|294495078|ref|YP_003541571.1| - 0.00093 18.8 0.0 0.012 15.2 0.0 2.7 2 0 0 2 2 2 1 DNA polymerase III, delta subunit T2SE PF00437.15 gi|294495078|ref|YP_003541571.1| - 0.0011 17.9 0.0 0.039 12.8 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_25 PF13481.1 gi|294495078|ref|YP_003541571.1| - 0.0012 18.2 3.6 1 8.7 0.0 4.1 3 2 2 5 5 4 1 AAA domain AAA_28 PF13521.1 gi|294495078|ref|YP_003541571.1| - 0.0016 18.4 1.0 1.1 9.1 0.0 3.9 3 1 0 3 3 3 1 AAA domain MMR_HSR1 PF01926.18 gi|294495078|ref|YP_003541571.1| - 0.0017 18.2 0.0 1.9 8.4 0.0 3.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase DUF815 PF05673.8 gi|294495078|ref|YP_003541571.1| - 0.002 17.1 0.1 0.27 10.1 0.1 2.8 2 1 0 2 2 2 1 Protein of unknown function (DUF815) TrwB_AAD_bind PF10412.4 gi|294495078|ref|YP_003541571.1| - 0.002 16.8 0.1 1.4 7.5 0.0 2.5 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain MobB PF03205.9 gi|294495078|ref|YP_003541571.1| - 0.0027 17.4 0.3 3.4 7.3 0.0 3.2 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|294495078|ref|YP_003541571.1| - 0.0036 16.9 0.0 3.7 7.1 0.0 2.9 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_24 PF13479.1 gi|294495078|ref|YP_003541571.1| - 0.0048 16.5 0.0 0.17 11.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|294495078|ref|YP_003541571.1| - 0.006 15.8 0.0 1.6 7.9 0.0 2.7 2 0 0 2 2 2 1 PhoH-like protein Torsin PF06309.6 gi|294495078|ref|YP_003541571.1| - 0.0071 16.2 0.0 0.025 14.4 0.0 1.9 2 0 0 2 2 1 1 Torsin AAA_33 PF13671.1 gi|294495078|ref|YP_003541571.1| - 0.011 15.5 0.3 0.56 10.0 0.0 3.1 4 0 0 4 4 2 0 AAA domain ResIII PF04851.10 gi|294495078|ref|YP_003541571.1| - 0.012 15.4 5.4 4.4 7.1 0.0 4.5 3 1 1 4 4 4 0 Type III restriction enzyme, res subunit AAA_29 PF13555.1 gi|294495078|ref|YP_003541571.1| - 0.015 14.8 0.0 2.8 7.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_3 PF07726.6 gi|294495078|ref|YP_003541571.1| - 0.018 14.6 0.2 1.4 8.5 0.0 3.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|294495078|ref|YP_003541571.1| - 0.019 14.3 0.1 4.1 6.7 0.1 2.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Ras PF00071.17 gi|294495078|ref|YP_003541571.1| - 0.025 13.9 0.2 12 5.2 0.0 3.2 3 0 0 3 3 3 0 Ras family PduV-EutP PF10662.4 gi|294495078|ref|YP_003541571.1| - 0.038 13.4 0.0 3.2 7.2 0.0 2.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_10 PF12846.2 gi|294495078|ref|YP_003541571.1| - 0.042 13.2 0.0 0.042 13.2 0.0 3.4 3 1 0 3 3 3 0 AAA-like domain Atg14 PF10186.4 gi|294495078|ref|YP_003541571.1| - 0.12 11.3 8.3 0.27 10.1 5.7 1.6 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF87 PF01935.12 gi|294495078|ref|YP_003541571.1| - 0.35 10.6 12.1 2.1 8.1 0.0 3.9 4 0 0 4 4 3 0 Domain of unknown function DUF87 DUF4407 PF14362.1 gi|294495078|ref|YP_003541571.1| - 0.39 9.6 10.2 0.8 8.6 7.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) AAA_23 PF13476.1 gi|294495078|ref|YP_003541571.1| - 3.7 7.8 32.4 0.47 10.7 0.0 4.9 4 2 1 5 5 4 0 AAA domain Cpn60_TCP1 PF00118.19 gi|294495079|ref|YP_003541572.1| - 4.9e-128 427.7 17.0 5.6e-128 427.6 11.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Cpn10 PF00166.16 gi|294495080|ref|YP_003541573.1| - 4e-24 84.3 1.4 4.4e-24 84.2 1.0 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit HTH_24 PF13412.1 gi|294495081|ref|YP_003541574.1| - 1.8e-09 36.8 0.1 1.3e-08 34.0 0.1 2.2 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|294495081|ref|YP_003541574.1| - 1.4e-06 27.8 0.1 2.5e-06 27.0 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|294495081|ref|YP_003541574.1| - 6.8e-06 25.6 0.2 1.3e-05 24.8 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|294495081|ref|YP_003541574.1| - 7.5e-06 25.5 0.1 1.7e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|294495081|ref|YP_003541574.1| - 7.5e-06 25.5 0.1 1.2e-05 24.8 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|294495081|ref|YP_003541574.1| - 8.5e-06 25.4 0.1 3.7e-05 23.4 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|294495081|ref|YP_003541574.1| - 5.5e-05 23.2 0.2 9.5e-05 22.4 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator RPA_C PF08784.6 gi|294495081|ref|YP_003541574.1| - 0.00012 22.4 0.1 0.00025 21.4 0.0 1.5 2 0 0 2 2 1 1 Replication protein A C terminal HTH_IclR PF09339.5 gi|294495081|ref|YP_003541574.1| - 0.00042 19.8 0.0 0.00074 19.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|294495081|ref|YP_003541574.1| - 0.0012 18.7 0.0 0.0021 17.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF2250 PF10007.4 gi|294495081|ref|YP_003541574.1| - 0.0022 17.8 0.2 0.0032 17.3 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.1 gi|294495081|ref|YP_003541574.1| - 0.0023 17.6 0.1 0.0056 16.4 0.0 1.7 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain EAP30 PF04157.11 gi|294495081|ref|YP_003541574.1| - 0.004 16.3 0.0 0.0059 15.7 0.0 1.4 1 0 0 1 1 1 1 EAP30/Vps36 family TFIIE_alpha PF02002.12 gi|294495081|ref|YP_003541574.1| - 0.017 14.6 0.2 0.032 13.7 0.1 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit Put_DNA-bind_N PF06971.8 gi|294495081|ref|YP_003541574.1| - 0.018 14.8 0.1 0.05 13.3 0.0 1.8 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus HTH_34 PF13601.1 gi|294495081|ref|YP_003541574.1| - 0.019 15.0 0.1 0.033 14.2 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|294495081|ref|YP_003541574.1| - 0.021 15.1 0.2 0.054 13.8 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain Rio2_N PF09202.6 gi|294495081|ref|YP_003541574.1| - 0.024 14.6 0.1 0.033 14.2 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal ATP-cone PF03477.11 gi|294495081|ref|YP_003541574.1| - 0.029 14.8 0.0 0.052 13.9 0.0 1.4 1 0 0 1 1 1 0 ATP cone domain HTH_45 PF14947.1 gi|294495081|ref|YP_003541574.1| - 0.05 13.4 0.1 0.077 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DUF387 PF04079.11 gi|294495081|ref|YP_003541574.1| - 0.06 12.7 0.2 0.11 11.8 0.1 1.4 1 1 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) HTH_15 PF12324.3 gi|294495081|ref|YP_003541574.1| - 0.061 12.9 0.0 0.097 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase RP-C PF03428.8 gi|294495081|ref|YP_003541574.1| - 0.076 12.4 0.3 0.19 11.1 0.0 1.7 2 0 0 2 2 2 0 Replication protein C N-terminal domain GntR PF00392.16 gi|294495081|ref|YP_003541574.1| - 0.11 11.9 0.3 0.2 11.1 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family ABC_tran PF00005.22 gi|294495082|ref|YP_003541575.1| - 5.6e-23 81.7 0.0 9.7e-23 80.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|294495082|ref|YP_003541575.1| - 2.2e-12 47.5 1.8 2.4e-09 37.5 1.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|294495082|ref|YP_003541575.1| - 3.1e-06 26.8 0.0 0.019 14.4 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_15 PF13175.1 gi|294495082|ref|YP_003541575.1| - 4.3e-05 22.7 0.6 0.022 13.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|294495082|ref|YP_003541575.1| - 0.00014 21.8 0.1 0.037 14.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|294495082|ref|YP_003541575.1| - 0.00052 19.3 0.2 0.024 13.8 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|294495082|ref|YP_003541575.1| - 0.00064 19.2 0.0 0.0014 18.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|294495082|ref|YP_003541575.1| - 0.0026 17.9 0.1 0.011 15.8 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|294495082|ref|YP_003541575.1| - 0.0066 16.0 0.0 0.3 10.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain Miro PF08477.8 gi|294495082|ref|YP_003541575.1| - 0.011 16.2 0.0 0.02 15.3 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_33 PF13671.1 gi|294495082|ref|YP_003541575.1| - 0.011 15.5 0.0 0.068 13.0 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|294495082|ref|YP_003541575.1| - 0.015 15.5 0.9 0.027 14.8 0.6 1.3 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|294495082|ref|YP_003541575.1| - 0.02 14.3 0.0 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF258 PF03193.11 gi|294495082|ref|YP_003541575.1| - 0.021 14.0 0.0 0.031 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF815 PF05673.8 gi|294495082|ref|YP_003541575.1| - 0.023 13.6 0.0 0.12 11.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_13 PF13166.1 gi|294495082|ref|YP_003541575.1| - 0.034 12.6 0.9 1.3 7.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|294495082|ref|YP_003541575.1| - 0.035 14.0 0.0 0.064 13.2 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase NTPase_1 PF03266.10 gi|294495082|ref|YP_003541575.1| - 0.039 13.6 0.1 2.8 7.6 0.0 2.3 2 0 0 2 2 2 0 NTPase IstB_IS21 PF01695.12 gi|294495082|ref|YP_003541575.1| - 0.046 13.1 0.2 0.3 10.4 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein MutS_V PF00488.16 gi|294495082|ref|YP_003541575.1| - 0.077 12.3 0.1 0.12 11.7 0.1 1.2 1 0 0 1 1 1 0 MutS domain V Pyr_redox_2 PF07992.9 gi|294495083|ref|YP_003541576.1| - 8.3e-34 117.2 1.3 1.3e-33 116.5 0.9 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|294495083|ref|YP_003541576.1| - 9.8e-19 67.4 0.0 2.4e-18 66.1 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|294495083|ref|YP_003541576.1| - 4.3e-18 65.5 4.6 8.1e-16 58.2 0.2 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|294495083|ref|YP_003541576.1| - 4.1e-09 35.8 3.3 0.0035 16.2 0.2 3.2 3 0 0 3 3 3 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|294495083|ref|YP_003541576.1| - 4.1e-09 36.7 0.4 6.3e-06 26.3 0.0 2.8 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|294495083|ref|YP_003541576.1| - 3.7e-06 26.0 2.8 8.7e-05 21.5 1.1 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|294495083|ref|YP_003541576.1| - 8.7e-05 21.7 4.1 0.0091 15.0 0.0 3.2 2 1 1 3 3 3 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|294495083|ref|YP_003541576.1| - 9.5e-05 22.0 1.0 0.19 11.3 0.0 2.6 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.2 gi|294495083|ref|YP_003541576.1| - 0.00012 21.3 7.9 0.051 12.6 0.1 2.6 2 1 1 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|294495083|ref|YP_003541576.1| - 0.00018 21.4 2.7 0.0037 17.2 0.2 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|294495083|ref|YP_003541576.1| - 0.00034 19.2 6.4 0.024 13.1 0.7 2.8 2 1 1 3 3 3 2 HI0933-like protein 3HCDH_N PF02737.13 gi|294495083|ref|YP_003541576.1| - 0.00042 20.0 3.6 0.18 11.4 0.1 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.12 gi|294495083|ref|YP_003541576.1| - 0.00078 18.6 0.5 0.018 14.1 0.2 2.5 2 0 0 2 2 2 1 Thi4 family GDI PF00996.13 gi|294495083|ref|YP_003541576.1| - 0.0013 17.1 1.5 0.0041 15.5 0.0 2.3 2 1 1 3 3 3 1 GDP dissociation inhibitor 2-Hacid_dh_C PF02826.14 gi|294495083|ref|YP_003541576.1| - 0.0024 17.0 0.4 0.15 11.1 0.1 2.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|294495083|ref|YP_003541576.1| - 0.0028 16.3 2.1 0.16 10.5 0.1 2.6 2 1 1 3 3 3 1 Tryptophan halogenase F420_oxidored PF03807.12 gi|294495083|ref|YP_003541576.1| - 0.0065 16.8 1.2 2 8.8 0.1 2.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent FAD_binding_2 PF00890.19 gi|294495083|ref|YP_003541576.1| - 0.0073 15.2 2.4 0.0073 15.2 1.7 2.3 2 1 1 3 3 3 1 FAD binding domain XdhC_C PF13478.1 gi|294495083|ref|YP_003541576.1| - 0.018 15.3 0.0 1.5 9.0 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain UDPG_MGDP_dh_N PF03721.9 gi|294495083|ref|YP_003541576.1| - 0.033 13.5 2.1 6.8 6.0 0.6 2.7 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|294495083|ref|YP_003541576.1| - 0.057 13.6 0.2 3.2 8.0 0.0 2.5 2 0 0 2 2 2 0 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|294495083|ref|YP_003541576.1| - 0.28 10.0 5.6 0.53 9.1 0.3 2.7 2 1 1 3 3 3 0 Lycopene cyclase protein Rad17 PF03215.10 gi|294495084|ref|YP_003541577.1| - 1.3e-13 50.5 0.2 4.1e-06 25.7 0.1 2.3 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|294495084|ref|YP_003541577.1| - 2.3e-12 47.2 0.0 7.3e-12 45.6 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|294495084|ref|YP_003541577.1| - 1.3e-07 31.7 3.0 0.00023 21.3 0.1 4.0 2 2 0 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|294495084|ref|YP_003541577.1| - 1.5e-05 25.8 0.3 9.1e-05 23.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|294495084|ref|YP_003541577.1| - 4.2e-05 23.4 0.0 0.00015 21.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|294495084|ref|YP_003541577.1| - 0.00041 19.4 0.0 0.0013 17.7 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|294495084|ref|YP_003541577.1| - 0.0018 17.6 0.1 0.0048 16.3 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|294495084|ref|YP_003541577.1| - 0.0045 16.1 0.2 0.02 14.0 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin AAA_16 PF13191.1 gi|294495084|ref|YP_003541577.1| - 0.0083 16.1 0.0 0.27 11.2 0.0 2.7 1 1 2 3 3 3 1 AAA ATPase domain DNA_pol3_delta2 PF13177.1 gi|294495084|ref|YP_003541577.1| - 0.0091 15.6 3.9 0.07 12.7 0.1 3.6 3 1 1 4 4 4 1 DNA polymerase III, delta subunit DEAD PF00270.24 gi|294495084|ref|YP_003541577.1| - 0.014 14.9 0.0 0.65 9.4 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_25 PF13481.1 gi|294495084|ref|YP_003541577.1| - 0.086 12.2 1.2 2.2 7.6 0.1 2.5 1 1 1 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|294495084|ref|YP_003541577.1| - 0.11 12.7 0.1 0.11 12.7 0.0 2.6 3 0 0 3 3 3 0 AAA domain DUF258 PF03193.11 gi|294495084|ref|YP_003541577.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|294495084|ref|YP_003541577.1| - 0.65 9.5 3.8 0.83 9.1 1.0 2.2 2 1 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|294495084|ref|YP_003541577.1| - 1.8 7.7 4.7 11 5.1 0.2 2.9 2 1 1 3 3 3 0 PhoH-like protein PTA_PTB PF01515.14 gi|294495085|ref|YP_003541578.1| - 2.5e-05 23.5 0.0 0.0016 17.5 0.0 2.1 1 1 1 2 2 2 2 Phosphate acetyl/butaryl transferase MtrA PF04208.9 gi|294495086|ref|YP_003541579.1| - 5.1e-62 208.4 0.0 6.5e-62 208.0 0.0 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrH PF02007.13 gi|294495087|ref|YP_003541580.1| - 1.6e-128 427.9 0.0 1.8e-128 427.7 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit UPF0239 PF06783.6 gi|294495088|ref|YP_003541581.1| - 0.045 13.6 0.6 0.078 12.9 0.4 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0239) ILVD_EDD PF00920.16 gi|294495089|ref|YP_003541582.1| - 1.5e-218 726.5 5.4 1.7e-218 726.3 3.7 1.0 1 0 0 1 1 1 1 Dehydratase family DUF3006 PF11213.3 gi|294495089|ref|YP_003541582.1| - 0.0097 15.6 0.6 0.089 12.5 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3006) TcdB_N PF12918.2 gi|294495089|ref|YP_003541582.1| - 0.059 13.4 0.2 0.14 12.2 0.2 1.5 1 0 0 1 1 1 0 TcdB toxin N-terminal helical domain Radical_SAM PF04055.16 gi|294495090|ref|YP_003541583.1| - 3.9e-11 43.4 0.0 7.7e-11 42.4 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily FKBP_C PF00254.23 gi|294495091|ref|YP_003541584.1| - 8.7e-24 83.3 0.0 2.6e-23 81.8 0.0 1.7 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase NTP_transferase PF00483.18 gi|294495092|ref|YP_003541585.1| - 3.8e-43 147.5 0.0 4.7e-43 147.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|294495092|ref|YP_003541585.1| - 3.4e-24 83.2 27.0 1.9e-08 33.4 1.1 6.2 2 1 4 6 6 6 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|294495092|ref|YP_003541585.1| - 7.6e-12 44.5 25.9 1.7e-05 24.2 4.0 5.0 3 2 1 4 4 4 4 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.2 gi|294495092|ref|YP_003541585.1| - 4e-08 33.4 0.0 4.8e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain tRNA_anti-codon PF01336.20 gi|294495093|ref|YP_003541586.1| - 1.7e-06 27.7 0.1 2.5e-06 27.2 0.1 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.2 gi|294495093|ref|YP_003541586.1| - 0.0018 17.7 1.8 0.0086 15.5 0.1 2.0 1 1 1 2 2 2 1 tRNA_anti-like DUF4131 PF13567.1 gi|294495093|ref|YP_003541586.1| - 0.0049 16.2 0.0 0.013 14.9 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4131) FAD_binding_7 PF03441.9 gi|294495094|ref|YP_003541587.1| - 2.5e-39 135.1 0.8 9.3e-38 130.0 0.5 2.2 1 1 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|294495094|ref|YP_003541587.1| - 9.2e-21 74.2 1.3 1.4e-20 73.7 0.3 1.7 2 0 0 2 2 2 1 DNA photolyase Lactamase_B PF00753.22 gi|294495095|ref|YP_003541588.1| - 5.6e-19 68.5 0.0 7.8e-19 68.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|294495095|ref|YP_003541588.1| - 3.6e-05 23.5 0.0 7.3e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_1 PF00258.20 gi|294495095|ref|YP_003541588.1| - 0.00032 20.7 0.0 0.0011 18.9 0.0 1.9 1 1 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.2 gi|294495095|ref|YP_003541588.1| - 0.052 13.0 0.0 0.09 12.3 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Fer4_13 PF13370.1 gi|294495096|ref|YP_003541589.1| - 7.9e-19 67.8 6.7 9.5e-19 67.5 4.6 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|294495096|ref|YP_003541589.1| - 1.9e-11 44.3 4.6 2.4e-11 44.0 3.2 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|294495096|ref|YP_003541589.1| - 1.5e-05 25.1 3.1 2.4e-05 24.4 2.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294495096|ref|YP_003541589.1| - 0.00086 19.1 11.1 0.0077 16.0 2.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294495096|ref|YP_003541589.1| - 0.0031 17.8 3.4 0.0083 16.4 2.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|294495096|ref|YP_003541589.1| - 0.011 15.5 0.5 0.015 15.1 0.3 1.2 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_16 PF13484.1 gi|294495096|ref|YP_003541589.1| - 0.012 16.3 2.4 0.67 10.7 2.2 2.1 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|294495096|ref|YP_003541589.1| - 0.048 13.2 7.4 0.72 9.5 0.2 2.7 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|294495096|ref|YP_003541589.1| - 0.052 13.4 0.4 0.052 13.4 0.3 2.4 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|294495096|ref|YP_003541589.1| - 0.11 12.4 1.0 0.15 11.9 0.7 1.1 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294495096|ref|YP_003541589.1| - 0.43 10.4 5.4 1.3 8.9 3.9 1.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294495096|ref|YP_003541589.1| - 0.49 10.3 6.7 2.4 8.1 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|294495096|ref|YP_003541589.1| - 3.1 8.3 8.3 0.85 10.1 1.2 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Peptidase_M42 PF05343.9 gi|294495097|ref|YP_003541590.1| - 0.0074 15.0 0.0 0.0092 14.7 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase MarR_2 PF12802.2 gi|294495097|ref|YP_003541590.1| - 0.025 14.2 0.1 0.13 11.9 0.0 2.0 1 1 1 2 2 2 0 MarR family TrmB PF01978.14 gi|294495097|ref|YP_003541590.1| - 0.053 13.2 0.1 0.087 12.5 0.1 1.4 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|294495097|ref|YP_003541590.1| - 0.11 12.1 0.1 0.52 10.0 0.0 2.0 1 1 1 2 2 2 0 MarR family Pyr_redox_2 PF07992.9 gi|294495098|ref|YP_003541591.1| - 1.4e-10 41.3 0.0 2.1e-09 37.5 0.0 2.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_10 PF13237.1 gi|294495098|ref|YP_003541591.1| - 3e-09 36.5 37.0 9.7e-06 25.2 7.9 3.4 4 0 0 4 4 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|294495098|ref|YP_003541591.1| - 5.1e-09 35.3 43.3 0.0011 18.4 1.9 6.0 5 1 0 5 5 5 4 4Fe-4S binding domain DAO PF01266.19 gi|294495098|ref|YP_003541591.1| - 4.1e-08 32.5 1.0 2.8e-06 26.4 0.5 2.4 2 1 1 3 3 3 1 FAD dependent oxidoreductase FlpD PF02662.11 gi|294495098|ref|YP_003541591.1| - 1.2e-07 31.4 1.8 1.3e-06 28.1 0.0 3.1 3 0 0 3 3 3 1 Methyl-viologen-reducing hydrogenase, delta subunit FAD_oxidored PF12831.2 gi|294495098|ref|YP_003541591.1| - 3.4e-07 29.7 0.2 6.9e-07 28.6 0.1 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_7 PF12838.2 gi|294495098|ref|YP_003541591.1| - 4.8e-07 30.0 40.5 0.0013 19.0 7.4 5.2 3 2 4 7 7 7 6 4Fe-4S dicluster domain FAD_binding_2 PF00890.19 gi|294495098|ref|YP_003541591.1| - 3.8e-06 25.9 2.3 6.8e-06 25.1 1.6 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|294495098|ref|YP_003541591.1| - 4.5e-06 26.6 0.1 1.3e-05 25.1 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_2 PF12797.2 gi|294495098|ref|YP_003541591.1| - 6.8e-06 25.6 39.2 0.038 13.9 1.7 5.1 4 0 0 4 4 4 3 4Fe-4S binding domain GIDA PF01134.17 gi|294495098|ref|YP_003541591.1| - 1.5e-05 24.0 1.9 3.6e-05 22.8 1.2 1.7 1 1 1 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|294495098|ref|YP_003541591.1| - 2.9e-05 24.2 0.4 0.0015 18.5 0.1 2.6 2 1 1 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_16 PF13484.1 gi|294495098|ref|YP_003541591.1| - 4.4e-05 24.1 31.4 0.071 13.8 0.0 5.8 6 0 0 6 6 6 4 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|294495098|ref|YP_003541591.1| - 0.00013 21.7 46.5 0.086 12.7 2.6 5.2 5 0 0 5 5 4 4 4Fe-4S binding domain Thi4 PF01946.12 gi|294495098|ref|YP_003541591.1| - 0.00018 20.6 0.0 0.00036 19.6 0.0 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|294495098|ref|YP_003541591.1| - 0.00089 18.4 0.2 0.0015 17.6 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_21 PF14697.1 gi|294495098|ref|YP_003541591.1| - 0.0015 18.3 41.3 0.004 16.9 3.1 4.5 5 0 0 5 5 4 3 4Fe-4S dicluster domain Pyr_redox PF00070.22 gi|294495098|ref|YP_003541591.1| - 0.0015 18.8 0.3 0.0082 16.5 0.2 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|294495098|ref|YP_003541591.1| - 0.0038 15.7 0.6 0.0087 14.5 0.6 1.5 2 0 0 2 2 2 1 HI0933-like protein Fer4_9 PF13187.1 gi|294495098|ref|YP_003541591.1| - 0.0052 17.0 34.4 0.0077 16.4 7.2 4.7 5 2 2 7 7 5 4 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294495098|ref|YP_003541591.1| - 0.098 12.7 40.7 0.14 12.2 10.3 4.9 5 1 2 7 7 6 0 4Fe-4S dicluster domain Lycopene_cycl PF05834.7 gi|294495098|ref|YP_003541591.1| - 1 8.2 2.4 1.2 7.9 0.3 2.1 3 0 0 3 3 3 0 Lycopene cyclase protein Fer4_8 PF13183.1 gi|294495099|ref|YP_003541592.1| - 2.6e-10 40.1 9.4 4.3e-10 39.4 6.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|294495099|ref|YP_003541592.1| - 5.2e-09 36.3 11.1 8.8e-09 35.5 7.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294495099|ref|YP_003541592.1| - 7.7e-06 26.0 10.7 1.9e-05 24.8 7.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294495099|ref|YP_003541592.1| - 1.1e-05 25.7 9.6 1.8e-05 24.9 6.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294495099|ref|YP_003541592.1| - 7.4e-05 22.4 12.3 0.0002 21.0 8.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294495099|ref|YP_003541592.1| - 0.00027 20.6 11.6 0.00044 20.0 3.0 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|294495099|ref|YP_003541592.1| - 0.00037 20.2 5.4 0.00068 19.4 3.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294495099|ref|YP_003541592.1| - 0.001 19.2 2.6 0.001 19.2 1.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4 PF00037.22 gi|294495099|ref|YP_003541592.1| - 0.0039 16.7 12.6 0.0041 16.6 2.3 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|294495099|ref|YP_003541592.1| - 0.0084 16.8 12.1 0.018 15.7 8.4 1.6 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|294495099|ref|YP_003541592.1| - 0.014 15.7 11.0 0.19 12.1 2.2 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294495099|ref|YP_003541592.1| - 0.033 14.0 3.4 0.033 14.0 2.3 2.0 2 0 0 2 2 1 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|294495099|ref|YP_003541592.1| - 1.2 9.5 7.0 0.31 11.4 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain CCG PF02754.11 gi|294495100|ref|YP_003541593.1| - 9e-19 67.2 3.1 7.4e-11 41.9 0.1 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Aconitase PF00330.15 gi|294495101|ref|YP_003541594.1| - 2.2e-90 303.3 0.9 1e-59 202.2 0.0 2.4 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) AntA PF08346.7 gi|294495102|ref|YP_003541595.1| - 0.025 14.7 0.1 0.042 14.0 0.0 1.4 1 1 0 1 1 1 0 AntA/AntB antirepressor Usp PF00582.21 gi|294495103|ref|YP_003541596.1| - 1.6e-35 122.3 0.1 1.9e-35 122.1 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family Toprim_4 PF13662.1 gi|294495103|ref|YP_003541596.1| - 0.019 14.9 0.0 0.52 10.3 0.0 2.3 2 0 0 2 2 2 0 Toprim domain PAC2 PF09754.4 gi|294495103|ref|YP_003541596.1| - 0.077 12.8 0.0 8.6 6.1 0.0 2.1 2 0 0 2 2 2 0 PAC2 family DUF3579 PF12112.3 gi|294495103|ref|YP_003541596.1| - 0.086 12.7 0.0 3.6 7.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3579) Pyr_redox_2 PF07992.9 gi|294495105|ref|YP_003541598.1| - 7.3e-13 48.8 0.0 1.5e-12 47.8 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|294495105|ref|YP_003541598.1| - 9.2e-05 21.4 0.1 0.03 13.2 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|294495105|ref|YP_003541598.1| - 0.00012 21.8 0.0 0.092 12.5 0.1 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|294495105|ref|YP_003541598.1| - 0.00032 21.0 0.2 0.87 10.0 0.0 2.7 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|294495105|ref|YP_003541598.1| - 0.01 15.8 0.1 0.22 11.5 0.0 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|294495105|ref|YP_003541598.1| - 0.011 15.7 0.1 0.025 14.6 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Saccharop_dh PF03435.13 gi|294495105|ref|YP_003541598.1| - 0.078 11.9 0.1 0.12 11.2 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Trp_halogenase PF04820.9 gi|294495105|ref|YP_003541598.1| - 0.1 11.1 0.0 0.2 10.2 0.0 1.5 1 0 0 1 1 1 0 Tryptophan halogenase DUF1641 PF07849.6 gi|294495106|ref|YP_003541599.1| - 1.9e-11 43.3 0.6 3.3e-11 42.5 0.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) Acetyltransf_1 PF00583.19 gi|294495107|ref|YP_003541600.1| - 0.00036 20.5 0.6 0.00055 19.9 0.4 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|294495107|ref|YP_003541600.1| - 0.00095 19.2 0.8 0.0016 18.5 0.6 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|294495107|ref|YP_003541600.1| - 0.018 15.1 0.1 0.032 14.3 0.1 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|294495107|ref|YP_003541600.1| - 0.13 11.9 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein VWA_2 PF13519.1 gi|294495108|ref|YP_003541601.1| - 4.2e-10 40.0 0.0 3.1e-09 37.1 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|294495108|ref|YP_003541601.1| - 2.2e-08 34.0 0.1 6.1e-08 32.5 0.1 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF4350 PF14258.1 gi|294495108|ref|YP_003541601.1| - 0.0007 19.7 0.2 0.0055 16.8 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) K1377 PF15352.1 gi|294495108|ref|YP_003541601.1| - 0.18 9.7 0.1 0.31 8.9 0.1 1.3 1 0 0 1 1 1 0 Susceptibility to monomelic amyotrophy CbbQ_C PF08406.5 gi|294495109|ref|YP_003541602.1| - 2.9e-33 113.7 0.2 2.5e-32 110.7 0.0 2.1 2 0 0 2 2 2 1 CbbQ/NirQ/NorQ C-terminal AAA_5 PF07728.9 gi|294495109|ref|YP_003541602.1| - 5.8e-29 100.5 0.0 7.9e-29 100.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|294495109|ref|YP_003541602.1| - 0.0017 18.2 0.0 0.0038 17.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_3 PF07726.6 gi|294495109|ref|YP_003541602.1| - 0.0025 17.4 0.0 0.0039 16.7 0.0 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|294495109|ref|YP_003541602.1| - 0.0035 17.4 0.0 0.0065 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|294495109|ref|YP_003541602.1| - 0.0056 16.8 0.0 0.0086 16.2 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|294495109|ref|YP_003541602.1| - 0.0064 15.3 0.0 0.0088 14.8 0.0 1.1 1 0 0 1 1 1 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|294495109|ref|YP_003541602.1| - 0.0068 15.8 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|294495109|ref|YP_003541602.1| - 0.025 14.7 0.0 0.044 13.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ResIII PF04851.10 gi|294495109|ref|YP_003541602.1| - 0.084 12.6 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Cupin_5 PF06172.6 gi|294495110|ref|YP_003541603.1| - 4.5e-48 162.7 0.0 5.2e-48 162.4 0.0 1.0 1 0 0 1 1 1 1 Cupin superfamily (DUF985) PAS_4 PF08448.5 gi|294495111|ref|YP_003541604.1| - 5.5e-31 106.8 0.0 2.5e-18 66.1 0.0 3.5 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|294495111|ref|YP_003541604.1| - 3.2e-30 104.0 0.2 5.6e-30 103.3 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|294495111|ref|YP_003541604.1| - 1.6e-27 95.5 0.0 2.2e-15 56.4 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|294495111|ref|YP_003541604.1| - 1.4e-23 83.2 0.0 2.4e-10 40.7 0.0 3.5 3 0 0 3 3 3 3 PAS domain HisKA PF00512.20 gi|294495111|ref|YP_003541604.1| - 2.8e-20 72.0 0.0 6.9e-20 70.8 0.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|294495111|ref|YP_003541604.1| - 4.3e-18 65.1 0.0 4.9e-15 55.3 0.0 3.5 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.1 gi|294495111|ref|YP_003541604.1| - 3e-12 45.9 0.0 0.0031 17.3 0.0 3.9 4 0 0 4 4 4 3 PAS domain GAF_2 PF13185.1 gi|294495111|ref|YP_003541604.1| - 9.7e-09 35.8 0.0 2.3e-08 34.6 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|294495111|ref|YP_003541604.1| - 2.3e-07 30.9 0.0 4.3e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c_3 PF13589.1 gi|294495111|ref|YP_003541604.1| - 0.0001 21.9 0.1 0.00019 21.0 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.21 gi|294495111|ref|YP_003541604.1| - 0.0064 16.6 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 GAF domain FKBP_C PF00254.23 gi|294495113|ref|YP_003541606.1| - 1e-15 57.4 0.6 1.5e-15 56.9 0.4 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF3153 PF11353.3 gi|294495113|ref|YP_003541606.1| - 0.1 12.0 0.1 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3153) PAS_9 PF13426.1 gi|294495114|ref|YP_003541607.1| - 9.5e-47 157.6 2.5 3.2e-13 49.9 0.0 6.6 6 1 1 7 7 6 5 PAS domain PAS_3 PF08447.6 gi|294495114|ref|YP_003541607.1| - 1.7e-45 153.0 4.0 2.6e-15 56.3 0.0 6.3 7 0 0 7 7 7 3 PAS fold PAS_4 PF08448.5 gi|294495114|ref|YP_003541607.1| - 8e-45 151.3 0.0 4.9e-11 42.6 0.0 5.9 6 0 0 6 6 6 5 PAS fold PAS PF00989.19 gi|294495114|ref|YP_003541607.1| - 6e-39 132.3 0.1 6.2e-16 58.1 0.0 5.6 5 1 0 5 5 5 4 PAS fold HATPase_c PF02518.21 gi|294495114|ref|YP_003541607.1| - 1.1e-31 108.8 0.2 3.1e-31 107.3 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|294495114|ref|YP_003541607.1| - 4e-21 74.7 0.0 1.1e-20 73.4 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|294495114|ref|YP_003541607.1| - 9.3e-14 50.7 0.0 0.096 12.5 0.0 5.7 5 0 0 5 5 5 4 PAS domain PAS_11 PF14598.1 gi|294495114|ref|YP_003541607.1| - 4.8e-12 45.8 0.0 2.1e-07 30.8 0.0 3.6 3 0 0 3 3 3 2 PAS domain PAS_10 PF13596.1 gi|294495114|ref|YP_003541607.1| - 4.4e-07 30.1 5.3 0.04 14.1 0.1 4.7 5 0 0 5 5 5 2 PAS domain GAF_2 PF13185.1 gi|294495114|ref|YP_003541607.1| - 1.7e-05 25.3 0.0 8.8e-05 23.0 0.0 2.2 2 0 0 2 2 2 1 GAF domain HATPase_c_3 PF13589.1 gi|294495114|ref|YP_003541607.1| - 0.00024 20.7 0.1 0.0007 19.2 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|294495114|ref|YP_003541607.1| - 0.00094 19.2 0.0 0.0021 18.1 0.0 1.6 1 0 0 1 1 1 1 GAF domain DUF1048 PF06304.6 gi|294495114|ref|YP_003541607.1| - 0.026 14.8 0.4 0.5 10.7 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1048) SIMPL PF04402.9 gi|294495115|ref|YP_003541608.1| - 2.7e-49 167.8 6.0 3.2e-49 167.6 4.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) YbaB_DNA_bd PF02575.11 gi|294495115|ref|YP_003541608.1| - 0.094 12.6 0.1 0.094 12.6 0.1 2.4 3 0 0 3 3 3 0 YbaB/EbfC DNA-binding family Ground-like PF04155.13 gi|294495116|ref|YP_003541609.1| - 0.13 12.5 0.1 0.15 12.4 0.0 1.0 1 0 0 1 1 1 0 Ground-like domain Aldolase_II PF00596.16 gi|294495117|ref|YP_003541610.1| - 6.1e-37 127.0 0.4 6.9e-37 126.8 0.3 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain CDP-OH_P_transf PF01066.16 gi|294495118|ref|YP_003541611.1| - 4.5e-13 49.3 7.3 4.5e-13 49.3 5.0 1.9 1 1 1 2 2 2 1 CDP-alcohol phosphatidyltransferase Archease PF01951.11 gi|294495119|ref|YP_003541612.1| - 1.9e-39 134.7 0.6 2.1e-39 134.6 0.4 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) RtcB PF01139.12 gi|294495120|ref|YP_003541613.1| - 3.8e-151 503.8 0.2 4.3e-151 503.6 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB TGT_C2 PF14810.1 gi|294495121|ref|YP_003541614.1| - 5.7e-32 109.3 0.0 8.8e-32 108.7 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|294495121|ref|YP_003541614.1| - 1.2e-11 44.1 0.1 1.7e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 PUA domain Bactofilin PF04519.8 gi|294495122|ref|YP_003541615.1| - 2.5e-10 40.2 12.8 1.6e-05 24.8 2.2 3.8 2 2 2 4 4 4 4 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|294495122|ref|YP_003541615.1| - 0.0023 17.3 30.2 0.23 11.0 0.5 6.4 5 1 1 6 6 6 5 Bacterial transferase hexapeptide (six repeats) DUF3494 PF11999.3 gi|294495122|ref|YP_003541615.1| - 0.026 14.1 0.6 0.41 10.2 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF3494) Aminotran_3 PF00202.16 gi|294495123|ref|YP_003541616.1| - 3.5e-109 364.7 0.5 4.1e-109 364.5 0.4 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|294495123|ref|YP_003541616.1| - 1.1e-05 24.5 0.0 1.5e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|294495123|ref|YP_003541616.1| - 1.7e-05 24.1 0.1 2.9e-05 23.3 0.1 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|294495123|ref|YP_003541616.1| - 0.00041 19.1 0.0 0.0013 17.5 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|294495123|ref|YP_003541616.1| - 0.0023 16.2 0.0 0.0032 15.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|294495124|ref|YP_003541617.1| - 2.8e-61 207.4 0.0 3.2e-61 207.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|294495124|ref|YP_003541617.1| - 9.1e-09 34.8 0.3 1.2e-08 34.3 0.2 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|294495124|ref|YP_003541617.1| - 3.8e-07 29.1 0.0 1.2e-06 27.5 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|294495124|ref|YP_003541617.1| - 1.5e-06 26.7 0.2 6.1e-06 24.7 0.0 1.9 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.8 gi|294495124|ref|YP_003541617.1| - 2.2e-05 23.3 0.0 6e-05 21.8 0.0 1.6 2 0 0 2 2 2 1 Allinase HEM4 PF02602.10 gi|294495124|ref|YP_003541617.1| - 0.088 12.0 0.0 0.87 8.7 0.0 2.4 2 1 0 2 2 2 0 Uroporphyrinogen-III synthase HemD DUF381 PF04038.7 gi|294495125|ref|YP_003541618.1| - 4.9e-23 80.9 0.3 6.8e-23 80.4 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|294495125|ref|YP_003541618.1| - 2.6e-20 71.5 0.1 3.6e-20 71.1 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF372) DnaI_N PF07319.6 gi|294495125|ref|YP_003541618.1| - 0.078 13.2 0.0 0.1 12.8 0.0 1.2 1 0 0 1 1 1 0 Primosomal protein DnaI N-terminus Rubrerythrin PF02915.12 gi|294495126|ref|YP_003541619.1| - 8.8e-27 94.0 9.6 6.8e-26 91.2 6.7 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|294495126|ref|YP_003541619.1| - 3.5e-06 26.8 2.0 4.3e-06 26.5 1.4 1.1 1 0 0 1 1 1 1 Ferritin-like domain DZR PF12773.2 gi|294495126|ref|YP_003541619.1| - 0.0091 15.7 0.4 0.014 15.1 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|294495126|ref|YP_003541619.1| - 0.022 14.4 2.3 0.036 13.8 1.6 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C3HC4_3 PF13920.1 gi|294495126|ref|YP_003541619.1| - 0.023 14.3 0.2 0.034 13.8 0.1 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Rubredoxin PF00301.15 gi|294495126|ref|YP_003541619.1| - 0.038 13.8 4.5 1.1 9.2 3.1 2.4 1 1 0 1 1 1 0 Rubredoxin DUF2492 PF10678.4 gi|294495126|ref|YP_003541619.1| - 0.04 13.9 0.3 0.15 12.1 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2492) RecR PF02132.10 gi|294495126|ref|YP_003541619.1| - 0.051 13.0 0.8 0.11 11.9 0.6 1.5 1 0 0 1 1 1 0 RecR protein zinc_ribbon_2 PF13240.1 gi|294495126|ref|YP_003541619.1| - 0.061 12.8 2.1 0.13 11.7 1.5 1.6 1 0 0 1 1 1 0 zinc-ribbon domain zf-RING_5 PF14634.1 gi|294495126|ref|YP_003541619.1| - 0.16 11.7 0.7 0.25 11.0 0.5 1.3 1 0 0 1 1 1 0 zinc-RING finger domain Enterotoxin_ST PF02048.11 gi|294495126|ref|YP_003541619.1| - 0.2 11.9 3.7 0.95 9.7 2.5 2.2 1 1 0 1 1 1 0 Heat-stable enterotoxin ST zf-FPG_IleRS PF06827.9 gi|294495126|ref|YP_003541619.1| - 0.31 10.7 1.8 11 5.7 2.2 2.3 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.5 gi|294495126|ref|YP_003541619.1| - 0.49 10.3 2.4 5.1 7.1 1.6 2.3 1 1 0 1 1 1 0 Zinc ribbon domain Desulfoferrod_N PF06397.7 gi|294495126|ref|YP_003541619.1| - 0.92 8.9 8.0 4.1 6.8 5.6 2.0 1 1 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain zf-ribbon_3 PF13248.1 gi|294495126|ref|YP_003541619.1| - 3.3 7.0 6.1 7.1 5.9 0.4 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Peptidase_MA_2 PF13485.1 gi|294495127|ref|YP_003541620.1| - 8.3e-08 32.3 0.2 2.3e-07 30.9 0.1 1.7 1 0 0 1 1 1 1 Peptidase MA superfamily Peptidase_M1 PF01433.15 gi|294495127|ref|YP_003541620.1| - 1.4e-05 24.4 0.6 0.0018 17.4 0.2 2.6 2 1 0 2 2 2 2 Peptidase family M1 Fe_dep_repr_C PF02742.10 gi|294495128|ref|YP_003541621.1| - 5.3e-24 83.6 0.1 1.1e-23 82.6 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain FeoA PF04023.9 gi|294495128|ref|YP_003541621.1| - 1.5e-07 31.3 0.0 3e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 FeoA domain zf-ribbon_3 PF13248.1 gi|294495129|ref|YP_003541622.1| - 1e-05 24.5 11.1 0.005 16.0 4.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|294495129|ref|YP_003541622.1| - 0.0007 19.0 15.3 0.014 14.8 0.7 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|294495129|ref|YP_003541622.1| - 0.0068 16.2 11.0 0.024 14.4 7.6 1.7 1 1 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|294495129|ref|YP_003541622.1| - 0.014 15.0 16.6 0.026 14.2 0.7 2.8 2 1 1 3 3 3 0 Uncharacterised protein family UPF0547 Fer4_2 PF12797.2 gi|294495129|ref|YP_003541622.1| - 0.056 13.3 0.9 0.056 13.3 0.6 1.9 2 0 0 2 2 1 0 4Fe-4S binding domain TF_Zn_Ribbon PF08271.7 gi|294495129|ref|YP_003541622.1| - 0.083 12.2 11.3 0.26 10.6 2.8 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|294495129|ref|YP_003541622.1| - 0.084 12.6 6.7 2 8.2 2.3 2.8 2 1 0 2 2 2 0 PhnA Zinc-Ribbon zf-H2C2_5 PF13909.1 gi|294495129|ref|YP_003541622.1| - 0.12 12.6 2.7 7.2 7.0 0.1 2.6 2 0 0 2 2 2 0 C2H2-type zinc-finger domain zinc-ribbons_6 PF07191.7 gi|294495129|ref|YP_003541622.1| - 0.13 12.1 8.0 0.19 11.5 5.5 1.4 1 1 0 1 1 1 0 zinc-ribbons Rad50_zn_hook PF04423.9 gi|294495129|ref|YP_003541622.1| - 0.13 11.7 11.5 1 8.8 2.0 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif TerY-C PF15616.1 gi|294495129|ref|YP_003541622.1| - 0.15 11.9 6.1 0.17 11.8 4.2 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain zf-C3HC4_3 PF13920.1 gi|294495129|ref|YP_003541622.1| - 0.24 11.1 9.5 0.86 9.3 4.0 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Rubredoxin PF00301.15 gi|294495129|ref|YP_003541622.1| - 0.26 11.1 7.4 2 8.3 1.1 2.7 2 1 0 2 2 2 0 Rubredoxin zf-DNA_Pol PF08996.5 gi|294495129|ref|YP_003541622.1| - 0.29 10.4 3.6 0.32 10.3 2.5 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger Zn_Tnp_IS1595 PF12760.2 gi|294495129|ref|YP_003541622.1| - 0.55 10.0 9.9 8.9 6.2 2.6 2.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|294495129|ref|YP_003541622.1| - 1.3 8.6 10.3 13 5.5 4.0 2.4 2 1 0 2 2 2 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|294495129|ref|YP_003541622.1| - 3.2 7.5 10.3 0.27 11.0 3.2 1.9 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2HC5 PF06221.8 gi|294495129|ref|YP_003541622.1| - 5 6.9 11.9 0.87 9.3 3.4 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type A2L_zn_ribbon PF08792.5 gi|294495129|ref|YP_003541622.1| - 6.7 6.2 10.5 2.2 7.8 0.3 3.2 3 1 0 3 3 3 0 A2L zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|294495129|ref|YP_003541622.1| - 6.9 6.2 9.2 9.1 5.8 6.4 1.5 1 1 0 1 1 1 0 Transposase zinc-binding domain zf-Di19 PF05605.7 gi|294495129|ref|YP_003541622.1| - 7.1 6.8 11.7 23 5.1 8.1 2.0 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-C2HC_2 PF13913.1 gi|294495129|ref|YP_003541622.1| - 7.7 6.3 10.9 5.4 6.8 0.4 3.1 3 0 0 3 3 3 0 zinc-finger of a C2HC-type zf-RING_2 PF13639.1 gi|294495129|ref|YP_003541622.1| - 9.1 6.2 11.6 3.7 7.4 2.1 2.1 1 1 1 2 2 2 0 Ring finger domain FeoB_N PF02421.13 gi|294495130|ref|YP_003541623.1| - 5.1e-56 188.2 0.2 8.5e-56 187.5 0.2 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|294495130|ref|YP_003541623.1| - 5.1e-25 87.4 20.2 1.8e-13 50.3 4.3 2.8 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|294495130|ref|YP_003541623.1| - 7.9e-19 67.7 0.0 1.7e-18 66.6 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|294495130|ref|YP_003541623.1| - 6.2e-12 44.7 1.2 6.2e-12 44.7 0.9 3.2 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus Ras PF00071.17 gi|294495130|ref|YP_003541623.1| - 1.3e-06 27.9 0.0 4e-06 26.3 0.0 1.8 1 1 0 1 1 1 1 Ras family AIG1 PF04548.11 gi|294495130|ref|YP_003541623.1| - 4e-06 26.0 0.0 1.5e-05 24.2 0.0 1.8 2 0 0 2 2 2 1 AIG1 family PduV-EutP PF10662.4 gi|294495130|ref|YP_003541623.1| - 0.0022 17.4 0.0 0.0061 16.0 0.0 1.8 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|294495130|ref|YP_003541623.1| - 0.014 15.9 0.0 0.033 14.6 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein SRPRB PF09439.5 gi|294495130|ref|YP_003541623.1| - 0.023 13.9 0.0 0.047 12.9 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Dynamin_N PF00350.18 gi|294495130|ref|YP_003541623.1| - 0.036 13.8 2.5 0.26 11.1 0.0 2.7 2 1 1 3 3 3 0 Dynamin family DUF258 PF03193.11 gi|294495130|ref|YP_003541623.1| - 0.057 12.6 0.1 0.29 10.2 0.1 2.1 1 1 0 1 1 1 0 Protein of unknown function, DUF258 IFT46_B_C PF12317.3 gi|294495130|ref|YP_003541623.1| - 0.12 11.7 1.6 0.25 10.6 0.8 1.6 2 0 0 2 2 2 0 Intraflagellar transport complex B protein 46 C terminal ArgK PF03308.11 gi|294495130|ref|YP_003541623.1| - 0.71 8.6 3.9 1.2 7.7 0.0 3.0 4 0 0 4 4 4 0 ArgK protein AAA PF00004.24 gi|294495131|ref|YP_003541624.1| - 2.9e-43 147.2 0.8 9.8e-43 145.5 0.0 2.3 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|294495131|ref|YP_003541624.1| - 3.7e-06 26.7 0.0 1.5e-05 24.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|294495131|ref|YP_003541624.1| - 9.1e-05 22.5 0.0 0.0018 18.3 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|294495131|ref|YP_003541624.1| - 0.00012 22.2 0.0 0.0065 16.6 0.0 2.8 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|294495131|ref|YP_003541624.1| - 0.00014 21.8 0.1 0.0011 18.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|294495131|ref|YP_003541624.1| - 0.00066 18.7 0.0 0.002 17.2 0.0 1.8 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus DUF3450 PF11932.3 gi|294495131|ref|YP_003541624.1| - 0.0029 16.9 1.3 0.0045 16.2 0.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) KaiC PF06745.8 gi|294495131|ref|YP_003541624.1| - 0.0035 16.4 1.1 0.047 12.7 0.0 2.6 2 0 0 2 2 2 1 KaiC GrpE PF01025.14 gi|294495131|ref|YP_003541624.1| - 0.0037 16.8 3.1 0.0085 15.6 2.2 1.6 1 0 0 1 1 1 1 GrpE AAA_19 PF13245.1 gi|294495131|ref|YP_003541624.1| - 0.0038 16.9 0.0 0.008 15.9 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain Leu_zip PF15294.1 gi|294495131|ref|YP_003541624.1| - 0.0055 15.8 3.4 0.0096 15.0 2.3 1.3 1 0 0 1 1 1 1 Leucine zipper DUF4201 PF13870.1 gi|294495131|ref|YP_003541624.1| - 0.0074 15.7 2.3 0.015 14.7 1.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) Sigma54_activat PF00158.21 gi|294495131|ref|YP_003541624.1| - 0.0077 15.7 0.0 0.053 12.9 0.0 2.3 3 0 0 3 3 3 1 Sigma-54 interaction domain Zeta_toxin PF06414.7 gi|294495131|ref|YP_003541624.1| - 0.01 14.9 0.0 0.023 13.7 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin TIP49 PF06068.8 gi|294495131|ref|YP_003541624.1| - 0.012 14.3 0.1 0.061 12.0 0.0 2.0 2 0 0 2 2 2 0 TIP49 C-terminus DUF815 PF05673.8 gi|294495131|ref|YP_003541624.1| - 0.015 14.2 0.0 0.036 13.0 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|294495131|ref|YP_003541624.1| - 0.017 14.0 0.5 0.051 12.5 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) HALZ PF02183.13 gi|294495131|ref|YP_003541624.1| - 0.018 14.7 2.7 0.018 14.7 1.9 2.2 2 0 0 2 2 2 0 Homeobox associated leucine zipper IstB_IS21 PF01695.12 gi|294495131|ref|YP_003541624.1| - 0.021 14.2 0.0 0.052 12.9 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|294495131|ref|YP_003541624.1| - 0.024 15.4 0.3 0.068 13.9 0.0 2.0 2 1 0 2 2 1 0 AAA domain AAA_14 PF13173.1 gi|294495131|ref|YP_003541624.1| - 0.024 14.5 0.0 0.067 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|294495131|ref|YP_003541624.1| - 0.032 14.5 0.7 0.36 11.1 0.0 2.5 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|294495131|ref|YP_003541624.1| - 0.033 13.3 0.1 0.075 12.1 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|294495131|ref|YP_003541624.1| - 0.033 14.3 0.0 0.084 13.0 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_3 PF07726.6 gi|294495131|ref|YP_003541624.1| - 0.034 13.7 0.0 0.087 12.4 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|294495131|ref|YP_003541624.1| - 0.046 13.3 0.0 0.092 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|294495131|ref|YP_003541624.1| - 0.1 12.4 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain TBPIP PF07106.8 gi|294495131|ref|YP_003541624.1| - 1.7 8.1 7.7 3.8 7.0 5.4 1.5 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF972 PF06156.8 gi|294495131|ref|YP_003541624.1| - 2.2 8.6 8.1 11 6.3 5.6 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF972) Penicillinase_R PF03965.11 gi|294495132|ref|YP_003541625.1| - 0.00023 21.2 0.0 0.00039 20.5 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor PAT1 PF09770.4 gi|294495132|ref|YP_003541625.1| - 0.098 10.8 22.6 0.11 10.6 15.7 1.0 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 DUF131 PF01998.12 gi|294495133|ref|YP_003541626.1| - 1.4e-10 40.3 10.4 1.4e-10 40.3 7.2 1.7 1 1 1 2 2 2 1 Protein of unknown function DUF131 Bax1-I PF01027.15 gi|294495133|ref|YP_003541626.1| - 0.027 14.0 6.1 0.03 13.9 4.2 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 SUR7 PF06687.7 gi|294495133|ref|YP_003541626.1| - 0.05 13.1 2.9 0.056 12.9 2.0 1.1 1 0 0 1 1 1 0 SUR7/PalI family DUF485 PF04341.7 gi|294495133|ref|YP_003541626.1| - 0.39 10.4 2.3 4.1 7.1 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF485 PQ-loop PF04193.9 gi|294495133|ref|YP_003541626.1| - 1.9 8.0 6.6 5.8 6.5 0.8 2.2 2 0 0 2 2 2 0 PQ loop repeat DUF3955 PF13127.1 gi|294495133|ref|YP_003541626.1| - 3.3 7.3 14.6 0.31 10.6 2.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3955) DUF4282 PF14110.1 gi|294495133|ref|YP_003541626.1| - 5 7.3 10.9 29 4.9 7.5 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4282) DUF872 PF05915.7 gi|294495133|ref|YP_003541626.1| - 6.7 6.6 8.5 0.79 9.6 1.5 2.0 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF3040 PF11239.3 gi|294495133|ref|YP_003541626.1| - 8.9 6.4 6.0 1.2e+02 2.7 4.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) DUF131 PF01998.12 gi|294495134|ref|YP_003541627.1| - 2.1e-20 71.8 1.1 2.1e-20 71.8 0.7 1.6 1 1 0 1 1 1 1 Protein of unknown function DUF131 DUF3592 PF12158.3 gi|294495134|ref|YP_003541627.1| - 0.82 9.4 0.0 0.82 9.4 0.0 1.9 1 1 0 2 2 2 0 Protein of unknown function (DUF3592) DUF1980 PF09323.5 gi|294495134|ref|YP_003541627.1| - 1.4 8.6 3.6 0.93 9.2 0.0 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF1980) SdpI PF13630.1 gi|294495134|ref|YP_003541627.1| - 2 8.1 8.6 2.5 7.8 1.0 2.1 2 0 0 2 2 2 0 SdpI/YhfL protein family UvrB PF12344.3 gi|294495135|ref|YP_003541628.1| - 3e-20 71.4 3.4 6.9e-20 70.3 2.4 1.7 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|294495135|ref|YP_003541628.1| - 1.9e-15 56.5 0.0 4.7e-15 55.2 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|294495135|ref|YP_003541628.1| - 8e-15 55.1 0.0 3.9e-13 49.6 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.14 gi|294495135|ref|YP_003541628.1| - 9.9e-10 37.6 6.0 3.5e-09 35.8 3.6 2.5 2 0 0 2 2 2 1 UvrB/uvrC motif DEAD PF00270.24 gi|294495135|ref|YP_003541628.1| - 0.0001 21.8 0.0 0.002 17.6 0.0 2.9 3 0 0 3 3 3 1 DEAD/DEAH box helicase DUF87 PF01935.12 gi|294495135|ref|YP_003541628.1| - 0.005 16.6 0.4 0.07 12.9 0.0 2.6 2 1 1 3 3 3 1 Domain of unknown function DUF87 Kinesin PF00225.18 gi|294495135|ref|YP_003541628.1| - 0.0095 14.6 0.0 0.016 13.9 0.0 1.3 1 0 0 1 1 1 1 Kinesin motor domain AAA_30 PF13604.1 gi|294495135|ref|YP_003541628.1| - 0.034 13.7 0.0 2.1 7.8 0.0 2.6 2 0 0 2 2 2 0 AAA domain Flavi_DEAD PF07652.9 gi|294495135|ref|YP_003541628.1| - 0.043 13.5 0.6 1.1 9.0 0.0 3.1 4 0 0 4 4 4 0 Flavivirus DEAD domain AAA_19 PF13245.1 gi|294495135|ref|YP_003541628.1| - 0.064 13.0 0.0 0.17 11.6 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain DNA_alkylation PF08713.6 gi|294495136|ref|YP_003541629.1| - 1.6e-29 102.9 1.0 2e-29 102.6 0.7 1.2 1 0 0 1 1 1 1 DNA alkylation repair enzyme SOUL PF04832.7 gi|294495137|ref|YP_003541630.1| - 4.7e-42 143.4 0.0 5.2e-42 143.3 0.0 1.0 1 0 0 1 1 1 1 SOUL heme-binding protein Cadherin-like PF12733.2 gi|294495138|ref|YP_003541631.1| - 0.0026 17.9 0.6 0.0038 17.4 0.3 1.4 1 1 0 1 1 1 1 Cadherin-like beta sandwich domain CARDB PF07705.6 gi|294495138|ref|YP_003541631.1| - 0.0039 17.2 0.5 0.005 16.8 0.3 1.1 1 0 0 1 1 1 1 CARDB DDE_Tnp_1 PF01609.16 gi|294495139|ref|YP_003541632.1| - 1.6e-10 40.8 0.2 2.8e-10 40.0 0.1 1.3 1 0 0 1 1 1 1 Transposase DDE domain CAP PF00188.21 gi|294495140|ref|YP_003541633.1| - 2.1e-07 31.4 0.0 4.9e-07 30.2 0.0 1.7 1 1 0 1 1 1 1 Cysteine-rich secretory protein family DUF4234 PF14018.1 gi|294495141|ref|YP_003541634.1| - 3.6e-06 26.6 10.8 1.7e-05 24.4 7.5 2.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4234) TRAM_LAG1_CLN8 PF03798.11 gi|294495141|ref|YP_003541634.1| - 4.2 6.8 13.2 8.3 5.9 3.1 2.8 1 1 0 2 2 2 0 TLC domain Phage_integrase PF00589.17 gi|294495142|ref|YP_003541635.1| - 4e-25 88.4 0.0 4.4e-25 88.3 0.0 1.0 1 0 0 1 1 1 1 Phage integrase family Pox_D5 PF03288.11 gi|294495142|ref|YP_003541635.1| - 0.014 15.6 0.1 0.023 14.9 0.0 1.4 1 0 0 1 1 1 0 Poxvirus D5 protein-like LEDGF PF11467.3 gi|294495142|ref|YP_003541635.1| - 0.049 13.3 0.3 0.19 11.4 0.0 2.0 2 0 0 2 2 2 0 Lens epithelium-derived growth factor (LEDGF) DND1_DSRM PF14709.1 gi|294495142|ref|YP_003541635.1| - 0.071 13.4 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 double strand RNA binding domain from DEAD END PROTEIN 1 Sex_peptide PF08138.6 gi|294495143|ref|YP_003541636.1| - 0.063 13.1 0.0 0.066 13.0 0.0 1.1 1 0 0 1 1 1 0 Sex peptide (SP) family S-layer PF07752.6 gi|294495144|ref|YP_003541637.1| - 2.1e-116 387.6 38.6 6.4e-60 202.5 13.1 2.2 2 0 0 2 2 2 2 S-layer protein OpuAC PF04069.7 gi|294495144|ref|YP_003541637.1| - 6.9e-68 228.7 5.6 1.4e-67 227.7 3.9 1.5 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system DapB_N PF01113.15 gi|294495145|ref|YP_003541638.1| - 0.11 12.4 0.1 0.22 11.4 0.1 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Regulator_TrmB PF11495.3 gi|294495147|ref|YP_003541640.1| - 0.042 12.8 0.0 1.7 7.5 0.0 2.7 2 1 0 3 3 3 0 Archaeal transcriptional regulator TrmB Flavodoxin_3 PF12641.2 gi|294495148|ref|YP_003541641.1| - 1e-22 80.2 0.0 1.2e-22 80.0 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|294495148|ref|YP_003541641.1| - 7.4e-13 48.7 0.0 1.1e-12 48.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|294495148|ref|YP_003541641.1| - 5.9e-11 41.9 0.4 1e-06 28.1 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin Flavodoxin_1 PF00258.20 gi|294495148|ref|YP_003541641.1| - 2.5e-06 27.5 0.3 4.1e-06 26.8 0.0 1.6 2 0 0 2 2 2 1 Flavodoxin Fer4 PF00037.22 gi|294495149|ref|YP_003541642.1| - 1.3e-08 34.0 12.5 5.7e-06 25.7 1.9 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294495149|ref|YP_003541642.1| - 6.6e-08 32.0 10.7 9.3e-05 22.1 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294495149|ref|YP_003541642.1| - 2.3e-07 31.0 19.3 7e-06 26.3 5.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294495149|ref|YP_003541642.1| - 9.7e-07 28.4 7.2 1.9e-06 27.5 5.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294495149|ref|YP_003541642.1| - 1.3e-06 28.3 1.9 0.0005 20.0 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294495149|ref|YP_003541642.1| - 2.4e-06 27.2 6.5 0.00015 21.5 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294495149|ref|YP_003541642.1| - 2.7e-06 28.0 10.2 0.00016 22.3 7.1 2.4 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|294495149|ref|YP_003541642.1| - 6.2e-06 26.3 20.5 0.00019 21.6 7.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294495149|ref|YP_003541642.1| - 1.4e-05 25.4 2.3 0.0081 16.5 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|294495149|ref|YP_003541642.1| - 2.2e-05 24.7 11.9 0.019 15.4 3.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|294495149|ref|YP_003541642.1| - 9.3e-05 22.7 1.8 0.062 13.6 0.1 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294495149|ref|YP_003541642.1| - 0.00016 21.7 11.2 0.086 13.2 2.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|294495149|ref|YP_003541642.1| - 0.00053 19.7 10.0 0.15 12.0 0.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain DUF498 PF04430.9 gi|294495150|ref|YP_003541643.1| - 1.1e-12 47.5 0.0 1.2e-12 47.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) DUF4299 PF14132.1 gi|294495150|ref|YP_003541643.1| - 0.044 12.9 0.3 0.079 12.0 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4299) CBS PF00571.23 gi|294495151|ref|YP_003541644.1| - 6.8e-24 83.3 2.6 4.2e-13 48.8 0.1 2.1 2 0 0 2 2 2 2 CBS domain CMD PF02627.15 gi|294495152|ref|YP_003541645.1| - 2.7e-18 65.6 0.3 3.5e-18 65.2 0.2 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PA26 PF04636.8 gi|294495152|ref|YP_003541645.1| - 0.022 13.4 0.0 0.024 13.3 0.0 1.0 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) SapB_1 PF05184.10 gi|294495152|ref|YP_003541645.1| - 0.2 11.4 1.6 0.37 10.6 0.5 2.0 2 1 0 2 2 2 0 Saposin-like type B, region 1 DJ-1_PfpI PF01965.19 gi|294495153|ref|YP_003541646.1| - 2.2e-38 130.9 0.0 2.6e-38 130.7 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|294495153|ref|YP_003541646.1| - 2.5e-13 49.6 0.0 3.2e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|294495153|ref|YP_003541646.1| - 0.00041 19.8 0.0 0.00049 19.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|294495153|ref|YP_003541646.1| - 0.021 14.2 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 GATase_5 PF13507.1 gi|294495153|ref|YP_003541646.1| - 0.029 13.2 0.0 0.039 12.8 0.0 1.1 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.9 gi|294495153|ref|YP_003541646.1| - 0.049 13.2 0.0 0.074 12.6 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Radical_SAM PF04055.16 gi|294495154|ref|YP_003541647.1| - 1.7e-12 47.7 0.6 6.6e-12 45.9 0.1 2.0 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|294495154|ref|YP_003541647.1| - 3.9e-05 23.7 0.0 9.1e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|294495154|ref|YP_003541647.1| - 0.015 15.3 0.0 0.015 15.3 0.0 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain VRR_NUC PF08774.6 gi|294495155|ref|YP_003541648.1| - 0.0026 17.7 0.0 0.0048 16.8 0.0 1.5 1 0 0 1 1 1 1 VRR-NUC domain NIR_SIR PF01077.17 gi|294495156|ref|YP_003541649.1| - 4.7e-32 110.5 0.3 1.5e-31 108.8 0.1 1.8 2 1 0 2 2 2 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|294495156|ref|YP_003541649.1| - 3.4e-13 49.0 0.0 6.1e-13 48.1 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.22 gi|294495156|ref|YP_003541649.1| - 1.4e-10 40.3 12.6 2.6e-05 23.6 2.8 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|294495156|ref|YP_003541649.1| - 5.8e-07 29.2 11.6 5.8e-07 29.2 8.0 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294495156|ref|YP_003541649.1| - 9.3e-07 29.1 9.5 9.3e-07 29.1 6.6 3.3 3 1 1 4 4 4 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294495156|ref|YP_003541649.1| - 9e-06 25.4 16.6 0.002 17.9 0.9 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294495156|ref|YP_003541649.1| - 1.1e-05 25.6 10.8 1.1e-05 25.6 7.5 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294495156|ref|YP_003541649.1| - 6.6e-05 22.5 12.8 0.00018 21.2 2.0 3.8 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|294495156|ref|YP_003541649.1| - 0.0026 17.5 19.6 0.017 15.0 1.7 3.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|294495156|ref|YP_003541649.1| - 0.042 14.6 17.2 0.14 12.9 0.9 3.4 3 1 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|294495156|ref|YP_003541649.1| - 0.048 13.7 15.3 0.49 10.4 8.1 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|294495156|ref|YP_003541649.1| - 0.33 11.3 15.2 2.8 8.3 0.1 3.6 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|294495156|ref|YP_003541649.1| - 1.1 9.7 15.8 2.6 8.5 2.9 2.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294495156|ref|YP_003541649.1| - 2 8.9 24.5 0.13 12.6 2.3 3.5 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|294495156|ref|YP_003541649.1| - 2 8.8 19.2 2.7 8.4 1.6 3.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|294495156|ref|YP_003541649.1| - 2.3 8.8 23.6 0.15 12.6 0.6 4.3 3 2 1 4 4 4 0 4Fe-4S single cluster domain Malic_M PF03949.10 gi|294495157|ref|YP_003541650.1| - 3.6e-71 239.6 6.2 5.4e-71 239.1 4.3 1.2 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|294495157|ref|YP_003541650.1| - 3.5e-33 114.6 0.6 1e-30 106.6 0.4 2.5 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Pyr_redox_3 PF13738.1 gi|294495157|ref|YP_003541650.1| - 0.00017 21.6 0.0 0.0016 18.5 0.0 2.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|294495157|ref|YP_003541650.1| - 0.00091 19.3 0.3 0.002 18.2 0.2 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.16 gi|294495157|ref|YP_003541650.1| - 0.0013 18.3 1.1 0.0082 15.7 0.7 2.1 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ELFV_dehydrog PF00208.16 gi|294495157|ref|YP_003541650.1| - 0.0019 17.8 0.8 0.0061 16.1 0.1 2.0 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|294495157|ref|YP_003541650.1| - 0.0026 17.5 0.4 0.012 15.3 0.0 2.2 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|294495157|ref|YP_003541650.1| - 0.028 13.5 1.2 0.25 10.4 0.3 2.6 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|294495157|ref|YP_003541650.1| - 0.032 14.6 5.8 0.057 13.8 0.4 3.3 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ThiF PF00899.16 gi|294495157|ref|YP_003541650.1| - 0.038 13.8 0.4 0.038 13.8 0.3 2.4 3 1 0 3 3 3 0 ThiF family Pyr_redox_2 PF07992.9 gi|294495157|ref|YP_003541650.1| - 0.054 13.3 0.2 0.13 12.1 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|294495157|ref|YP_003541650.1| - 0.054 12.5 0.0 0.084 11.9 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain PGM_PMM_II PF02879.11 gi|294495157|ref|YP_003541650.1| - 0.13 12.6 0.1 2.6 8.4 0.0 2.8 2 1 1 3 3 3 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FKBP_C PF00254.23 gi|294495158|ref|YP_003541651.1| - 1.8e-25 88.7 1.3 3.1e-25 87.9 0.9 1.5 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Aconitase PF00330.15 gi|294495159|ref|YP_003541652.1| - 7.5e-138 459.8 0.0 1.7e-96 323.5 0.0 2.1 2 0 0 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|294495159|ref|YP_003541652.1| - 6.2e-43 146.0 0.0 1.1e-42 145.1 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain zf-CDGSH PF09360.5 gi|294495160|ref|YP_003541653.1| - 2.6e-28 97.5 5.8 1.2e-13 50.5 1.7 2.3 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.6 gi|294495160|ref|YP_003541653.1| - 1.7e-25 88.6 0.0 3.2e-25 87.7 0.0 1.5 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster CoA_binding_2 PF13380.1 gi|294495161|ref|YP_003541654.1| - 0.0037 17.4 0.0 0.0045 17.1 0.0 1.1 1 0 0 1 1 1 1 CoA binding domain Rhamnogal_lyase PF06045.6 gi|294495161|ref|YP_003541654.1| - 0.036 13.3 0.1 1.4 8.1 0.0 2.1 1 1 1 2 2 2 0 Rhamnogalacturonate lyase family eIF-1a PF01176.14 gi|294495162|ref|YP_003541655.1| - 3.7e-15 55.0 0.7 4.4e-15 54.8 0.5 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 LAM_C PF12544.3 gi|294495163|ref|YP_003541656.1| - 1.2e-09 38.3 0.1 3.8e-09 36.6 0.0 1.9 2 0 0 2 2 2 1 Lysine-2,3-aminomutase Fer4_14 PF13394.1 gi|294495163|ref|YP_003541656.1| - 2.6e-07 30.6 0.3 2e-06 27.7 0.0 2.5 2 1 1 3 3 3 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|294495163|ref|YP_003541656.1| - 4.1e-07 30.3 0.7 1.1e-06 28.8 0.1 2.0 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|294495163|ref|YP_003541656.1| - 0.00044 20.3 0.2 0.001 19.1 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain MarR PF01047.17 gi|294495164|ref|YP_003541657.1| - 2.2e-12 46.4 0.2 4.3e-12 45.5 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|294495164|ref|YP_003541657.1| - 5.4e-09 36.2 0.0 1.1e-08 35.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|294495164|ref|YP_003541657.1| - 5.3e-08 32.4 0.0 8.5e-08 31.7 0.0 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|294495164|ref|YP_003541657.1| - 3.5e-06 26.8 1.5 5.4e-06 26.2 0.1 2.0 2 1 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|294495164|ref|YP_003541657.1| - 0.00081 19.0 0.1 0.0019 17.8 0.0 1.7 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|294495164|ref|YP_003541657.1| - 0.0022 17.7 0.0 0.0054 16.5 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|294495164|ref|YP_003541657.1| - 0.0027 17.2 0.0 0.0041 16.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|294495164|ref|YP_003541657.1| - 0.003 17.3 0.0 0.0044 16.8 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_34 PF13601.1 gi|294495164|ref|YP_003541657.1| - 0.0035 17.3 0.0 0.0051 16.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|294495164|ref|YP_003541657.1| - 0.0065 16.2 0.2 0.015 15.1 0.0 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix HxlR PF01638.12 gi|294495164|ref|YP_003541657.1| - 0.0086 15.6 0.1 0.05 13.2 0.0 2.1 2 0 0 2 2 2 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|294495164|ref|YP_003541657.1| - 0.0092 15.7 0.0 0.02 14.6 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.1 gi|294495164|ref|YP_003541657.1| - 0.0097 15.2 1.5 0.014 14.8 0.0 2.1 3 0 0 3 3 2 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.11 gi|294495164|ref|YP_003541657.1| - 0.012 15.6 0.1 0.02 14.9 0.1 1.4 1 1 0 1 1 1 0 Penicillinase repressor DUF2513 PF10711.4 gi|294495164|ref|YP_003541657.1| - 0.014 15.5 0.0 0.029 14.4 0.0 1.5 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) DUF4423 PF14394.1 gi|294495164|ref|YP_003541657.1| - 0.019 14.4 0.4 0.054 13.0 0.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) DnaJ-X PF14308.1 gi|294495164|ref|YP_003541657.1| - 0.029 13.6 0.0 0.38 9.9 0.0 2.0 1 1 1 2 2 2 0 X-domain of DnaJ-containing DUF2250 PF10007.4 gi|294495164|ref|YP_003541657.1| - 0.046 13.6 2.3 0.058 13.3 0.0 2.2 3 0 0 3 3 2 0 Uncharacterized protein conserved in archaea (DUF2250) UTP15_C PF09384.5 gi|294495164|ref|YP_003541657.1| - 0.049 13.3 0.4 0.095 12.3 0.3 1.5 1 0 0 1 1 1 0 UTP15 C terminal Retro_M PF02813.9 gi|294495164|ref|YP_003541657.1| - 0.058 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Retroviral M domain DUF1730 PF08331.5 gi|294495164|ref|YP_003541657.1| - 0.064 12.9 0.0 0.24 11.0 0.0 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF1730) HTH_36 PF13730.1 gi|294495164|ref|YP_003541657.1| - 0.078 13.1 0.4 0.2 11.8 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain FeoC PF09012.5 gi|294495164|ref|YP_003541657.1| - 0.083 12.6 0.9 0.29 10.8 0.0 2.1 2 0 0 2 2 2 0 FeoC like transcriptional regulator DUF387 PF04079.11 gi|294495164|ref|YP_003541657.1| - 0.086 12.1 0.1 0.4 10.0 0.0 2.0 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) Rio2_N PF09202.6 gi|294495164|ref|YP_003541657.1| - 0.12 12.4 0.1 0.46 10.5 0.0 2.0 1 1 1 2 2 2 0 Rio2, N-terminal DUF3231 PF11553.3 gi|294495164|ref|YP_003541657.1| - 0.13 11.7 2.2 0.39 10.2 0.2 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3231) MMPL PF03176.10 gi|294495165|ref|YP_003541658.1| - 1.4e-58 198.2 7.6 3.3e-30 104.9 0.0 2.1 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|294495165|ref|YP_003541658.1| - 6.4e-16 58.1 15.9 1.2e-09 37.7 2.4 2.7 2 1 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.14 gi|294495165|ref|YP_003541658.1| - 3.3e-13 48.0 23.3 1.2e-11 42.8 3.6 2.3 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family SecD_SecF PF02355.11 gi|294495165|ref|YP_003541658.1| - 1.9e-12 46.7 9.1 1.9e-12 46.7 6.3 2.4 2 0 0 2 2 2 1 Protein export membrane protein Patched PF02460.13 gi|294495165|ref|YP_003541658.1| - 2e-10 39.3 18.0 9.2e-07 27.1 1.9 2.1 2 0 0 2 2 2 2 Patched family Fzo_mitofusin PF04799.8 gi|294495165|ref|YP_003541658.1| - 0.064 12.6 1.9 0.23 10.8 1.3 1.9 1 0 0 1 1 1 0 fzo-like conserved region NPCBM_assoc PF10633.4 gi|294495166|ref|YP_003541659.1| - 8.3e-05 22.5 0.1 0.4 10.7 0.0 2.8 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|294495166|ref|YP_003541659.1| - 0.0017 18.3 0.1 0.031 14.3 0.0 2.4 2 0 0 2 2 2 1 CARDB Fn3-like PF14310.1 gi|294495166|ref|YP_003541659.1| - 0.0067 16.3 0.0 0.036 14.0 0.0 2.2 2 0 0 2 2 2 1 Fibronectin type III-like domain NPCBM_assoc PF10633.4 gi|294495167|ref|YP_003541660.1| - 2.7e-09 36.9 0.2 0.00056 19.9 0.0 3.0 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|294495167|ref|YP_003541660.1| - 0.0055 16.7 1.4 0.34 10.9 0.1 2.9 2 1 2 4 4 4 1 CARDB DUF824 PF05688.6 gi|294495167|ref|YP_003541660.1| - 0.12 11.9 2.4 0.35 10.5 0.1 2.8 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) YtkA PF13115.1 gi|294495167|ref|YP_003541660.1| - 0.27 11.6 0.2 0.27 11.6 0.1 2.4 3 0 0 3 3 3 0 YtkA-like GTP_EFTU PF00009.22 gi|294495168|ref|YP_003541661.1| - 1.2e-43 148.7 0.2 1.7e-43 148.2 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|294495168|ref|YP_003541661.1| - 6.2e-27 93.4 0.1 1.4e-26 92.3 0.1 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|294495168|ref|YP_003541661.1| - 1.6e-06 28.1 1.6 2.8e-06 27.3 0.3 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|294495168|ref|YP_003541661.1| - 0.00082 18.8 2.8 1.4 8.4 0.6 3.0 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|294495168|ref|YP_003541661.1| - 0.0013 18.6 0.0 0.0026 17.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase PhnA_Zn_Ribbon PF08274.7 gi|294495168|ref|YP_003541661.1| - 0.057 13.2 0.8 1.7 8.4 0.1 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon PolC_DP2 PF03833.8 gi|294495168|ref|YP_003541661.1| - 0.079 10.6 0.4 0.12 10.0 0.2 1.2 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 FeoB_N PF02421.13 gi|294495168|ref|YP_003541661.1| - 0.12 11.6 1.2 6.7 5.9 0.3 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B zf-Mss51 PF13824.1 gi|294495168|ref|YP_003541661.1| - 0.15 11.9 3.2 0.33 10.8 2.2 1.6 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Nop10p PF04135.7 gi|294495168|ref|YP_003541661.1| - 0.36 10.6 2.0 0.68 9.7 1.4 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family Fcf1 PF04900.7 gi|294495169|ref|YP_003541662.1| - 5.1e-08 32.9 0.0 6.7e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Fcf1 DUF188 PF02639.9 gi|294495169|ref|YP_003541662.1| - 0.013 14.9 0.1 0.018 14.5 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 SHS2_Rpb7-N PF03876.12 gi|294495170|ref|YP_003541663.1| - 7.2e-20 70.8 0.2 1.4e-19 70.0 0.1 1.5 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|294495170|ref|YP_003541663.1| - 6.2e-13 48.6 0.6 1.5e-12 47.4 0.4 1.7 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|294495170|ref|YP_003541663.1| - 0.022 14.9 0.0 0.05 13.8 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 Spt4 PF06093.8 gi|294495171|ref|YP_003541664.1| - 1.4e-14 53.6 0.1 1.7e-14 53.4 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger TF_Zn_Ribbon PF08271.7 gi|294495171|ref|YP_003541664.1| - 0.0079 15.4 0.4 0.061 12.6 0.0 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding zf-C3HC4_3 PF13920.1 gi|294495171|ref|YP_003541664.1| - 0.082 12.5 1.5 0.11 12.1 1.0 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-ribbon_3 PF13248.1 gi|294495171|ref|YP_003541664.1| - 0.14 11.3 1.5 0.18 11.0 0.1 1.8 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|294495171|ref|YP_003541664.1| - 0.18 11.7 1.8 1.8 8.5 1.3 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|294495171|ref|YP_003541664.1| - 0.5 10.6 2.1 0.7 10.2 0.0 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF359 PF04019.7 gi|294495172|ref|YP_003541665.1| - 8.9e-39 131.6 0.0 1.2e-38 131.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Ribosomal_S24e PF01282.14 gi|294495173|ref|YP_003541666.1| - 1.5e-27 95.2 0.1 1.9e-27 94.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.14 gi|294495174|ref|YP_003541667.1| - 4.2e-23 80.9 3.3 4.5e-23 80.8 2.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a DZR PF12773.2 gi|294495174|ref|YP_003541667.1| - 6.9e-05 22.5 0.7 8.1e-05 22.3 0.5 1.1 1 0 0 1 1 1 1 Double zinc ribbon Ribosomal_L37e PF01907.14 gi|294495174|ref|YP_003541667.1| - 0.00011 21.9 0.7 0.00013 21.7 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e IBR PF01485.16 gi|294495174|ref|YP_003541667.1| - 0.00048 19.9 0.2 0.00049 19.9 0.2 1.1 1 0 0 1 1 1 1 IBR domain Nudix_N_2 PF14803.1 gi|294495174|ref|YP_003541667.1| - 0.00059 19.4 7.7 0.0089 15.6 3.3 2.7 1 1 1 2 2 2 2 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|294495174|ref|YP_003541667.1| - 0.00067 19.1 4.9 0.0034 16.8 0.4 2.1 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|294495174|ref|YP_003541667.1| - 0.00099 18.5 2.1 0.068 12.6 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|294495174|ref|YP_003541667.1| - 0.0016 18.0 0.3 0.0017 17.9 0.2 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain GFA PF04828.9 gi|294495174|ref|YP_003541667.1| - 0.0019 18.0 1.5 0.0064 16.4 0.2 1.9 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.1 gi|294495174|ref|YP_003541667.1| - 0.0023 17.0 13.2 0.025 13.7 4.1 2.0 1 1 1 2 2 2 2 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|294495174|ref|YP_003541667.1| - 0.005 16.4 2.7 0.013 15.1 1.9 1.6 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit DNA_RNApol_7kD PF03604.8 gi|294495174|ref|YP_003541667.1| - 0.0094 15.4 1.0 0.015 14.7 0.7 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit A2L_zn_ribbon PF08792.5 gi|294495174|ref|YP_003541667.1| - 0.014 14.8 4.0 0.11 12.0 1.8 2.5 1 1 1 2 2 2 0 A2L zinc ribbon domain HypA PF01155.14 gi|294495174|ref|YP_003541667.1| - 0.019 14.6 0.5 0.021 14.5 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family C1_1 PF00130.17 gi|294495174|ref|YP_003541667.1| - 0.02 14.6 0.5 0.024 14.3 0.3 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF1936 PF09151.5 gi|294495174|ref|YP_003541667.1| - 0.022 14.2 0.8 0.23 11.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) Zn_Tnp_IS1595 PF12760.2 gi|294495174|ref|YP_003541667.1| - 0.023 14.4 3.1 0.035 13.9 2.0 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|294495174|ref|YP_003541667.1| - 0.028 14.2 0.5 0.028 14.2 0.3 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like GCC2_GCC3 PF07699.8 gi|294495174|ref|YP_003541667.1| - 0.049 13.2 1.1 0.056 13.0 0.7 1.2 1 0 0 1 1 1 0 GCC2 and GCC3 Prok-RING_1 PF14446.1 gi|294495174|ref|YP_003541667.1| - 0.072 12.8 0.4 0.1 12.3 0.3 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF2082 PF09855.4 gi|294495174|ref|YP_003541667.1| - 0.079 12.8 5.3 0.13 12.1 0.4 2.5 2 1 1 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) NCD3G PF07562.9 gi|294495174|ref|YP_003541667.1| - 0.095 12.4 0.3 0.12 12.0 0.2 1.2 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR DUF1451 PF07295.6 gi|294495174|ref|YP_003541667.1| - 0.14 11.9 0.7 0.14 11.9 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) zf-RING_3 PF14369.1 gi|294495174|ref|YP_003541667.1| - 0.2 11.6 2.4 0.58 10.1 0.3 1.9 1 1 1 2 2 2 0 zinc-finger zinc_ribbon_5 PF13719.1 gi|294495174|ref|YP_003541667.1| - 0.3 10.6 3.6 11 5.7 2.1 2.4 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|294495174|ref|YP_003541667.1| - 0.37 10.5 3.6 2.6 7.8 0.2 2.3 1 1 1 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|294495174|ref|YP_003541667.1| - 0.56 9.9 3.8 0.81 9.4 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|294495174|ref|YP_003541667.1| - 0.65 9.3 5.8 1.3 8.3 3.5 1.9 1 1 1 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|294495174|ref|YP_003541667.1| - 0.69 9.9 3.7 7.5 6.5 0.3 2.1 1 1 1 2 2 2 0 Zinc ribbon domain ADK_lid PF05191.9 gi|294495174|ref|YP_003541667.1| - 1 9.0 5.7 7.8 6.2 0.2 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-ISL3 PF14690.1 gi|294495174|ref|YP_003541667.1| - 5.6 7.0 6.3 4.7 7.3 0.4 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Response_reg PF00072.19 gi|294495175|ref|YP_003541668.1| - 1.8e-19 69.7 0.1 2.1e-19 69.5 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain HisKA_2 PF07568.7 gi|294495176|ref|YP_003541669.1| - 7.4e-30 102.6 1.8 2.8e-29 100.7 1.3 2.1 1 0 0 1 1 1 1 Histidine kinase PAS_3 PF08447.6 gi|294495176|ref|YP_003541669.1| - 3.7e-17 62.1 0.2 1.4e-16 60.3 0.0 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.21 gi|294495176|ref|YP_003541669.1| - 6.9e-12 45.0 0.3 1.8e-11 43.7 0.2 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cache_1 PF02743.13 gi|294495176|ref|YP_003541669.1| - 2.8e-11 42.8 1.0 6.9e-09 35.1 0.3 2.7 1 1 1 2 2 2 2 Cache domain HAMP PF00672.20 gi|294495176|ref|YP_003541669.1| - 0.00015 21.8 0.1 0.00015 21.8 0.1 2.0 2 0 0 2 2 1 1 HAMP domain PAS_9 PF13426.1 gi|294495176|ref|YP_003541669.1| - 0.00037 20.8 0.0 0.0016 18.8 0.0 2.2 1 0 0 1 1 1 1 PAS domain HWE_HK PF07536.9 gi|294495176|ref|YP_003541669.1| - 0.00063 20.1 0.1 0.0018 18.6 0.0 1.8 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|294495176|ref|YP_003541669.1| - 0.0014 18.4 0.0 0.003 17.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF2140 PF09911.4 gi|294495176|ref|YP_003541669.1| - 0.0029 16.7 0.5 0.0029 16.7 0.3 2.7 3 0 0 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2140) PAS PF00989.19 gi|294495176|ref|YP_003541669.1| - 0.02 14.6 0.0 0.14 11.9 0.0 2.4 2 0 0 2 2 2 0 PAS fold UPF0118 PF01594.11 gi|294495176|ref|YP_003541669.1| - 0.18 10.7 3.0 0.36 9.7 0.7 2.2 2 0 0 2 2 2 0 Domain of unknown function DUF20 RBD-FIP PF09457.5 gi|294495176|ref|YP_003541669.1| - 2.1 8.2 5.9 2.8 7.7 0.1 3.0 3 0 0 3 3 2 0 FIP domain DUF1724 PF08350.5 gi|294495177|ref|YP_003541670.1| - 1.6e-23 82.0 0.6 4.4e-23 80.5 0.2 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|294495177|ref|YP_003541670.1| - 0.0028 17.2 0.3 0.0056 16.3 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|294495177|ref|YP_003541670.1| - 0.023 14.3 0.5 0.047 13.3 0.3 1.5 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.2 gi|294495177|ref|YP_003541670.1| - 0.091 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HxlR PF01638.12 gi|294495177|ref|YP_003541670.1| - 0.18 11.4 0.9 0.57 9.8 0.3 2.2 2 2 0 2 2 2 0 HxlR-like helix-turn-helix B12-binding PF02310.14 gi|294495178|ref|YP_003541671.1| - 1.1e-25 89.7 0.3 1.8e-25 89.1 0.2 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|294495178|ref|YP_003541671.1| - 1.1e-18 67.0 0.3 1.1e-18 67.0 0.2 2.0 3 0 0 3 3 3 1 B12 binding domain UPF0180 PF03698.8 gi|294495178|ref|YP_003541671.1| - 0.041 13.7 0.1 0.096 12.5 0.1 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) AA_permease_2 PF13520.1 gi|294495179|ref|YP_003541672.1| - 2.4e-62 210.8 48.1 3e-62 210.5 33.3 1.0 1 0 0 1 1 1 1 Amino acid permease DUF4225 PF13988.1 gi|294495180|ref|YP_003541673.1| - 0.023 14.1 0.1 0.025 14.0 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) TrbC PF04956.8 gi|294495180|ref|YP_003541673.1| - 0.025 14.6 0.3 0.027 14.4 0.2 1.1 1 0 0 1 1 1 0 TrbC/VIRB2 family PetL PF05115.9 gi|294495180|ref|YP_003541673.1| - 0.1 12.5 3.7 0.1 12.5 2.6 1.5 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit VI (PetL) Peptidase_U32 PF01136.14 gi|294495181|ref|YP_003541674.1| - 4.5e-78 261.3 0.1 8.1e-78 260.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase family U32 Peripla_BP_6 PF13458.1 gi|294495181|ref|YP_003541674.1| - 0.014 14.7 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein IL13 PF03487.8 gi|294495181|ref|YP_003541674.1| - 0.06 13.0 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Interleukin-13 dCMP_cyt_deam_1 PF00383.17 gi|294495182|ref|YP_003541675.1| - 7.7e-21 73.6 0.0 9.5e-21 73.3 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Bd3614-deam PF14439.1 gi|294495182|ref|YP_003541675.1| - 0.0011 18.8 0.2 0.0024 17.7 0.2 1.5 1 1 1 2 2 2 1 Bd3614-like deaminase XOO_2897-deam PF14440.1 gi|294495182|ref|YP_003541675.1| - 0.056 13.1 0.0 0.074 12.7 0.0 1.3 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase Topo-VIb_trans PF09239.6 gi|294495183|ref|YP_003541676.1| - 2.6e-70 235.0 0.0 4.3e-70 234.3 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|294495183|ref|YP_003541676.1| - 2.5e-12 46.4 0.0 5.7e-12 45.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|294495183|ref|YP_003541676.1| - 7.9e-10 38.5 0.0 1.5e-09 37.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|294495183|ref|YP_003541676.1| - 0.0033 16.0 0.7 0.0051 15.4 0.0 1.6 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) TP6A_N PF04406.9 gi|294495184|ref|YP_003541677.1| - 1.2e-18 66.5 0.1 2e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Peptidase_M22 PF00814.20 gi|294495186|ref|YP_003541679.1| - 8.4e-88 294.3 0.0 9.7e-88 294.1 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family RIO1 PF01163.17 gi|294495187|ref|YP_003541680.1| - 6.3e-10 38.7 0.0 1.1e-09 37.9 0.0 1.5 1 1 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|294495187|ref|YP_003541680.1| - 5.7e-09 35.3 0.1 7.6e-07 28.3 0.0 2.1 1 1 1 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|294495187|ref|YP_003541680.1| - 1.4e-08 34.8 0.7 0.00015 21.6 0.1 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|294495187|ref|YP_003541680.1| - 5.4e-06 25.7 0.0 5.8e-06 25.6 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|294495187|ref|YP_003541680.1| - 7.7e-05 22.0 0.0 0.00012 21.4 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.12 gi|294495187|ref|YP_003541680.1| - 0.022 13.8 0.0 0.023 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein tyrosine kinase Ham1p_like PF01725.11 gi|294495188|ref|YP_003541681.1| - 1.5e-53 181.0 0.0 1.6e-53 180.8 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Cyclase PF04199.8 gi|294495189|ref|YP_003541682.1| - 0.00017 21.3 0.0 0.00029 20.5 0.0 1.4 1 1 0 1 1 1 1 Putative cyclase PHP PF02811.14 gi|294495190|ref|YP_003541683.1| - 5e-15 55.7 0.2 6.3e-15 55.4 0.2 1.2 1 0 0 1 1 1 1 PHP domain DUF211 PF02680.9 gi|294495191|ref|YP_003541684.1| - 3.9e-39 132.3 2.4 4.5e-39 132.1 1.7 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 FtsJ PF01728.14 gi|294495192|ref|YP_003541685.1| - 1.5e-57 194.4 0.0 2.1e-57 194.0 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|294495192|ref|YP_003541685.1| - 9.7e-11 41.2 1.0 2.2e-10 40.1 0.7 1.6 1 0 0 1 1 1 1 TRAM domain Methyltransf_23 PF13489.1 gi|294495192|ref|YP_003541685.1| - 1.8e-06 27.7 0.0 4.9e-06 26.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|294495192|ref|YP_003541685.1| - 7e-05 23.3 0.0 0.0065 17.0 0.1 2.6 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|294495192|ref|YP_003541685.1| - 0.00027 20.5 0.0 0.0086 15.6 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain CmcI PF04989.7 gi|294495192|ref|YP_003541685.1| - 0.09 12.0 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Cephalosporin hydroxylase Methyltransf_11 PF08241.7 gi|294495192|ref|YP_003541685.1| - 0.11 13.0 0.0 0.86 10.1 0.0 2.3 1 1 0 1 1 1 0 Methyltransferase domain Methyltrans_Mon PF14314.1 gi|294495192|ref|YP_003541685.1| - 0.14 9.9 0.0 0.21 9.3 0.0 1.1 1 0 0 1 1 1 0 Virus-capping methyltransferase EzrA PF06160.7 gi|294495193|ref|YP_003541686.1| - 0.027 12.6 0.3 0.034 12.3 0.2 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Peptidase_M26_N PF05342.9 gi|294495193|ref|YP_003541686.1| - 0.032 13.2 0.1 0.049 12.5 0.0 1.2 1 0 0 1 1 1 0 M26 IgA1-specific Metallo-endopeptidase N-terminal region DFP PF04127.10 gi|294495194|ref|YP_003541687.1| - 1.6e-48 164.7 0.4 3.6e-47 160.3 0.0 2.1 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|294495194|ref|YP_003541687.1| - 1.9e-27 95.4 1.5 3.7e-27 94.5 1.0 1.5 1 0 0 1 1 1 1 Flavoprotein NAD_binding_10 PF13460.1 gi|294495194|ref|YP_003541687.1| - 0.00023 21.2 0.2 0.0017 18.4 0.0 2.2 2 0 0 2 2 2 1 NADH(P)-binding CPSase_L_chain PF00289.17 gi|294495194|ref|YP_003541687.1| - 0.075 13.1 0.3 1.2 9.2 0.1 2.7 3 0 0 3 3 3 0 Carbamoyl-phosphate synthase L chain, N-terminal domain GHMP_kinases_N PF00288.21 gi|294495195|ref|YP_003541688.1| - 2.5e-11 43.4 1.9 5.4e-11 42.3 1.3 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|294495195|ref|YP_003541688.1| - 0.0014 18.8 0.1 0.0014 18.8 0.1 2.1 2 1 0 2 2 2 1 GHMP kinases C terminal EamA PF00892.15 gi|294495196|ref|YP_003541689.1| - 3.7e-14 52.8 34.4 3.7e-08 33.4 9.6 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|294495196|ref|YP_003541689.1| - 0.00019 21.5 8.3 0.00019 21.5 5.7 3.9 2 2 2 4 4 4 1 Multidrug resistance efflux transporter URO-D PF01208.12 gi|294495197|ref|YP_003541690.1| - 3.7e-81 272.7 0.0 4.2e-81 272.5 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DUF137 PF02006.11 gi|294495198|ref|YP_003541691.1| - 4.7e-71 237.8 0.2 6e-71 237.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 HD PF01966.17 gi|294495199|ref|YP_003541692.1| - 9.8e-14 51.4 0.3 1.6e-13 50.7 0.2 1.3 1 0 0 1 1 1 1 HD domain Amidohydro_1 PF01979.15 gi|294495200|ref|YP_003541693.1| - 8e-55 186.7 1.2 1e-54 186.4 0.9 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|294495200|ref|YP_003541693.1| - 1.3e-13 50.5 0.0 1.8e-12 46.8 0.0 3.0 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|294495200|ref|YP_003541693.1| - 5.9e-12 45.5 2.4 9.4e-11 41.5 0.1 2.2 1 1 0 2 2 2 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|294495200|ref|YP_003541693.1| - 1.3e-10 41.8 0.1 1e-05 25.7 0.0 2.4 2 1 0 2 2 2 2 Amidohydrolase A_deaminase PF00962.17 gi|294495200|ref|YP_003541693.1| - 0.00081 18.4 0.1 0.0028 16.6 0.0 1.7 2 0 0 2 2 2 1 Adenosine/AMP deaminase CTP_synth_N PF06418.9 gi|294495200|ref|YP_003541693.1| - 0.057 12.5 0.0 0.091 11.8 0.0 1.2 1 0 0 1 1 1 0 CTP synthase N-terminus S-AdoMet_synt_C PF02773.11 gi|294495201|ref|YP_003541694.1| - 4e-62 207.9 0.2 6.8e-62 207.2 0.2 1.4 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, C-terminal domain S-AdoMet_synt_M PF02772.11 gi|294495201|ref|YP_003541694.1| - 3.4e-41 139.9 0.0 7.7e-41 138.8 0.0 1.6 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, central domain S-AdoMet_synt_N PF00438.15 gi|294495201|ref|YP_003541694.1| - 1.3e-35 121.6 0.6 2.3e-35 120.7 0.1 1.7 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, N-terminal domain AdoMet_Synthase PF01941.14 gi|294495201|ref|YP_003541694.1| - 0.028 12.9 0.0 0.15 10.5 0.0 1.9 2 0 0 2 2 2 0 S-adenosylmethionine synthetase (AdoMet synthetase) Phage_int_SAM_2 PF12834.2 gi|294495201|ref|YP_003541694.1| - 0.18 12.1 0.0 0.36 11.2 0.0 1.4 1 0 0 1 1 1 0 Phage integrase, N-terminal AdoHcyase PF05221.12 gi|294495202|ref|YP_003541695.1| - 5.6e-132 438.6 0.1 6.9e-132 438.3 0.0 1.1 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|294495202|ref|YP_003541695.1| - 7e-78 260.0 3.1 1e-77 259.5 2.2 1.2 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|294495202|ref|YP_003541695.1| - 0.00035 19.7 0.1 0.00062 18.9 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|294495202|ref|YP_003541695.1| - 0.00059 19.2 0.3 0.0011 18.3 0.2 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|294495202|ref|YP_003541695.1| - 0.0014 18.5 0.1 0.0033 17.4 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain 3HCDH_N PF02737.13 gi|294495202|ref|YP_003541695.1| - 0.059 13.0 0.2 0.16 11.6 0.2 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_18 PF12847.2 gi|294495203|ref|YP_003541696.1| - 1.3e-15 57.8 0.4 6.8e-15 55.6 0.3 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|294495203|ref|YP_003541696.1| - 4.4e-11 42.7 0.1 5.1e-11 42.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|294495203|ref|YP_003541696.1| - 1.3e-10 41.0 0.0 1.8e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|294495203|ref|YP_003541696.1| - 3e-10 40.3 0.1 5.4e-10 39.5 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|294495203|ref|YP_003541696.1| - 2.2e-09 37.6 0.1 4.2e-09 36.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|294495203|ref|YP_003541696.1| - 7.8e-09 35.9 0.1 1.4e-08 35.0 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|294495203|ref|YP_003541696.1| - 9.7e-06 24.8 0.0 1.1e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|294495203|ref|YP_003541696.1| - 0.00033 20.0 0.1 0.0006 19.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|294495203|ref|YP_003541696.1| - 0.0023 17.1 0.0 0.004 16.3 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_26 PF13659.1 gi|294495203|ref|YP_003541696.1| - 0.011 15.8 0.1 0.021 14.8 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|294495203|ref|YP_003541696.1| - 0.052 13.0 0.0 0.081 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CheR PF01739.13 gi|294495203|ref|YP_003541696.1| - 0.066 12.4 0.0 0.15 11.3 0.0 1.5 1 1 0 1 1 1 0 CheR methyltransferase, SAM binding domain Bin3 PF06859.7 gi|294495203|ref|YP_003541696.1| - 0.12 12.3 0.0 0.78 9.7 0.0 2.1 1 1 1 2 2 2 0 Bicoid-interacting protein 3 (Bin3) Methyltransf_11 PF08241.7 gi|294495204|ref|YP_003541697.1| - 4e-21 75.3 0.0 7.1e-21 74.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|294495204|ref|YP_003541697.1| - 9.2e-15 54.4 0.3 1.4e-14 53.8 0.2 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.1 gi|294495204|ref|YP_003541697.1| - 1.1e-14 54.3 0.0 5.7e-14 51.9 0.0 1.8 1 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|294495204|ref|YP_003541697.1| - 2.4e-14 53.3 0.0 3.5e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|294495204|ref|YP_003541697.1| - 1.4e-10 41.7 0.0 2.7e-10 40.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|294495204|ref|YP_003541697.1| - 7.4e-09 35.9 0.1 2.1e-08 34.5 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|294495204|ref|YP_003541697.1| - 7.7e-08 31.7 0.0 1.1e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|294495204|ref|YP_003541697.1| - 4.1e-07 30.2 0.1 1e-06 29.0 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_29 PF03141.11 gi|294495204|ref|YP_003541697.1| - 7.4e-07 27.8 0.0 1e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_26 PF13659.1 gi|294495204|ref|YP_003541697.1| - 8.7e-06 25.7 0.0 1.7e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|294495204|ref|YP_003541697.1| - 6.6e-05 22.3 0.0 0.00011 21.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.6 gi|294495204|ref|YP_003541697.1| - 0.00038 19.2 0.0 0.00078 18.2 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) MTS PF05175.9 gi|294495204|ref|YP_003541697.1| - 0.0078 15.5 0.0 0.016 14.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|294495204|ref|YP_003541697.1| - 0.013 14.5 0.0 0.019 14.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.1 gi|294495204|ref|YP_003541697.1| - 0.015 14.9 0.1 0.041 13.5 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain TehB PF03848.9 gi|294495204|ref|YP_003541697.1| - 0.015 14.4 0.0 0.028 13.5 0.0 1.4 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_8 PF05148.10 gi|294495204|ref|YP_003541697.1| - 0.024 14.2 0.0 0.17 11.5 0.0 2.0 1 1 0 1 1 1 0 Hypothetical methyltransferase FtsJ PF01728.14 gi|294495204|ref|YP_003541697.1| - 0.025 14.5 0.0 0.063 13.2 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase PCMT PF01135.14 gi|294495204|ref|YP_003541697.1| - 0.036 13.5 0.0 0.064 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_2 PF00891.13 gi|294495204|ref|YP_003541697.1| - 0.094 11.8 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Pox_MCEL PF03291.11 gi|294495204|ref|YP_003541697.1| - 0.12 11.2 0.1 8.3 5.1 0.0 2.5 3 0 0 3 3 3 0 mRNA capping enzyme PfkB PF00294.19 gi|294495205|ref|YP_003541698.1| - 3.1e-41 141.4 0.0 4e-41 141.1 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase AdoHcyase PF05221.12 gi|294495206|ref|YP_003541699.1| - 2e-59 200.7 0.0 2.4e-59 200.4 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|294495206|ref|YP_003541699.1| - 1.5e-48 164.6 0.6 1.5e-48 164.6 0.4 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|294495206|ref|YP_003541699.1| - 6e-09 35.2 0.0 1.1e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|294495206|ref|YP_003541699.1| - 4.5e-06 26.1 0.0 8.4e-06 25.2 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|294495206|ref|YP_003541699.1| - 0.0022 17.5 0.3 0.0054 16.3 0.2 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain RNA_pol_Rpb5_C PF01191.14 gi|294495207|ref|YP_003541700.1| - 9.4e-31 105.2 0.4 1e-30 105.1 0.3 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.10 gi|294495208|ref|YP_003541701.1| - 2.3e-62 209.5 0.0 2.8e-62 209.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|294495208|ref|YP_003541701.1| - 2.6e-26 92.2 0.0 3.8e-26 91.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|294495208|ref|YP_003541701.1| - 2.2e-24 84.9 0.0 4.2e-24 84.0 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_6 PF00562.23 gi|294495209|ref|YP_003541702.1| - 8.9e-125 416.4 0.0 1.1e-124 416.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|294495209|ref|YP_003541702.1| - 1.3e-29 102.2 0.1 2.6e-29 101.2 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|294495209|ref|YP_003541702.1| - 9.3e-20 70.2 0.9 2.1e-19 69.1 0.6 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|294495209|ref|YP_003541702.1| - 1.6e-15 56.8 1.4 3.5e-15 55.6 1.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 Nudix_N_2 PF14803.1 gi|294495209|ref|YP_003541702.1| - 0.0045 16.6 1.0 1.1 9.0 0.0 2.9 3 0 0 3 3 3 1 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|294495209|ref|YP_003541702.1| - 0.0056 15.8 1.5 0.012 14.7 1.0 1.6 1 1 0 1 1 1 1 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|294495209|ref|YP_003541702.1| - 0.011 15.2 1.3 0.048 13.1 0.0 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF1451 PF07295.6 gi|294495209|ref|YP_003541702.1| - 0.096 12.4 0.5 0.18 11.5 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) zinc_ribbon_2 PF13240.1 gi|294495209|ref|YP_003541702.1| - 0.12 11.8 1.0 1.6 8.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|294495209|ref|YP_003541702.1| - 0.16 11.8 0.2 0.35 10.7 0.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|294495209|ref|YP_003541702.1| - 0.3 10.4 4.5 1.4 8.2 3.1 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding RNA_pol_Rpb1_1 PF04997.7 gi|294495210|ref|YP_003541703.1| - 1.6e-87 293.9 0.0 6.2e-85 285.4 0.0 2.2 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|294495210|ref|YP_003541703.1| - 3.2e-65 219.1 0.1 5.3e-65 218.4 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|294495210|ref|YP_003541703.1| - 2.3e-34 118.4 0.0 4.1e-34 117.5 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.12 gi|294495210|ref|YP_003541703.1| - 2.9e-31 107.4 0.0 6.7e-31 106.2 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|294495210|ref|YP_003541703.1| - 2.1e-30 105.9 0.1 3.8e-30 105.0 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_5 PF04998.12 gi|294495211|ref|YP_003541704.1| - 2e-51 174.8 1.1 2.8e-51 174.3 0.7 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 NAC PF01849.13 gi|294495211|ref|YP_003541704.1| - 0.076 12.5 0.1 0.24 10.9 0.1 1.8 1 0 0 1 1 1 0 NAC domain Ribosomal_L7Ae PF01248.21 gi|294495212|ref|YP_003541705.1| - 1.7e-11 43.4 0.1 2.4e-11 42.9 0.1 1.2 1 1 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.12 gi|294495213|ref|YP_003541706.1| - 2.4e-21 75.0 1.5 4.6e-14 51.7 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|294495213|ref|YP_003541706.1| - 1e-10 41.2 3.5 2.2e-09 36.9 0.1 2.5 1 1 0 2 2 2 2 NusA-like KH domain KH_4 PF13083.1 gi|294495213|ref|YP_003541706.1| - 3.1e-08 33.1 2.0 0.00019 21.0 0.0 2.4 2 1 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|294495213|ref|YP_003541706.1| - 1.6e-05 24.4 5.0 0.045 13.3 0.2 2.4 1 1 1 2 2 2 2 KH domain KH_3 PF13014.1 gi|294495213|ref|YP_003541706.1| - 0.087 12.4 4.4 6.1 6.6 0.1 2.8 2 0 0 2 2 2 0 KH domain Ribosom_S12_S23 PF00164.20 gi|294495214|ref|YP_003541707.1| - 3.3e-37 126.6 0.3 4e-37 126.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.16 gi|294495215|ref|YP_003541708.1| - 5.6e-36 123.3 0.4 6.4e-36 123.1 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Baculo_VP39 PF04501.7 gi|294495215|ref|YP_003541708.1| - 0.099 11.6 0.1 0.18 10.7 0.0 1.4 2 0 0 2 2 2 0 Baculovirus major capsid protein VP39 GTP_EFTU PF00009.22 gi|294495216|ref|YP_003541709.1| - 2.6e-60 203.1 0.1 4.3e-60 202.3 0.1 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|294495216|ref|YP_003541709.1| - 2.8e-32 110.7 0.0 8.1e-32 109.3 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|294495216|ref|YP_003541709.1| - 3.7e-24 84.3 2.3 6.3e-24 83.6 0.4 2.1 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|294495216|ref|YP_003541709.1| - 2.2e-23 81.9 0.0 5.9e-23 80.5 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|294495216|ref|YP_003541709.1| - 4.4e-14 52.3 1.6 1.6e-13 50.5 1.1 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|294495216|ref|YP_003541709.1| - 5.3e-05 23.1 0.0 0.00012 21.9 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|294495216|ref|YP_003541709.1| - 0.011 15.2 0.0 0.033 13.6 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain DUF4473 PF14747.1 gi|294495216|ref|YP_003541709.1| - 0.086 13.0 0.0 0.3 11.3 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4473) Ras PF00071.17 gi|294495216|ref|YP_003541709.1| - 0.11 11.8 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 Ras family GTP_EFTU PF00009.22 gi|294495217|ref|YP_003541710.1| - 4.3e-58 195.8 0.0 5.4e-58 195.5 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|294495217|ref|YP_003541710.1| - 3.3e-29 100.9 1.7 4.4e-29 100.5 0.2 2.0 3 0 0 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|294495217|ref|YP_003541710.1| - 3e-17 62.4 0.7 7.5e-17 61.2 0.5 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 Miro PF08477.8 gi|294495217|ref|YP_003541710.1| - 1.3e-08 35.3 0.0 3.3e-06 27.5 0.0 2.7 2 1 0 2 2 2 1 Miro-like protein MMR_HSR1 PF01926.18 gi|294495217|ref|YP_003541710.1| - 5.2e-08 32.8 0.0 1.3e-07 31.5 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|294495217|ref|YP_003541710.1| - 0.00012 21.6 0.1 0.00032 20.2 0.1 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Dynamin_N PF00350.18 gi|294495217|ref|YP_003541710.1| - 0.00024 20.9 0.0 0.19 11.5 0.0 2.4 1 1 1 2 2 2 2 Dynamin family Ras PF00071.17 gi|294495217|ref|YP_003541710.1| - 0.00035 19.9 0.5 0.0024 17.2 0.1 2.1 2 0 0 2 2 2 1 Ras family Gtr1_RagA PF04670.7 gi|294495217|ref|YP_003541710.1| - 0.0021 17.2 0.0 0.0092 15.1 0.0 1.9 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region FGGY_C PF02782.11 gi|294495217|ref|YP_003541710.1| - 0.0076 15.8 0.0 0.019 14.5 0.0 1.6 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain FeoB_N PF02421.13 gi|294495217|ref|YP_003541710.1| - 0.014 14.7 0.1 0.37 10.0 0.1 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B SRPRB PF09439.5 gi|294495217|ref|YP_003541710.1| - 0.057 12.6 0.1 0.37 9.9 0.0 2.3 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit Ribosomal_S10 PF00338.17 gi|294495218|ref|YP_003541711.1| - 5.2e-29 99.9 0.0 5.7e-29 99.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e TrmB PF01978.14 gi|294495219|ref|YP_003541712.1| - 7e-07 28.8 0.1 8.2e-07 28.6 0.1 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|294495219|ref|YP_003541712.1| - 1.5e-06 28.2 0.0 1.9e-06 27.9 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.2 gi|294495219|ref|YP_003541712.1| - 1.5e-05 24.5 0.0 1.6e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|294495219|ref|YP_003541712.1| - 2e-05 24.4 0.1 2.3e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|294495219|ref|YP_003541712.1| - 3.6e-05 24.0 0.0 3.6e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|294495219|ref|YP_003541712.1| - 0.00038 19.7 0.0 0.00046 19.5 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|294495219|ref|YP_003541712.1| - 0.00046 19.9 0.0 0.00054 19.7 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|294495219|ref|YP_003541712.1| - 0.0016 18.0 0.0 0.0019 17.8 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|294495219|ref|YP_003541712.1| - 0.0037 16.8 0.0 0.0043 16.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family z-alpha PF02295.12 gi|294495219|ref|YP_003541712.1| - 0.021 14.6 0.0 0.025 14.3 0.0 1.1 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain TBPIP PF07106.8 gi|294495219|ref|YP_003541712.1| - 0.027 14.0 0.1 0.032 13.7 0.1 1.0 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Ribosomal_S13_N PF08069.7 gi|294495219|ref|YP_003541712.1| - 0.043 13.6 0.1 0.057 13.2 0.1 1.3 1 1 0 1 1 1 0 Ribosomal S13/S15 N-terminal domain HTH_11 PF08279.7 gi|294495219|ref|YP_003541712.1| - 0.055 13.1 0.0 0.065 12.8 0.0 1.1 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.1 gi|294495219|ref|YP_003541712.1| - 0.077 13.1 0.3 0.16 12.1 0.1 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|294495219|ref|YP_003541712.1| - 0.085 12.3 0.0 0.093 12.1 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_45 PF14947.1 gi|294495219|ref|YP_003541712.1| - 0.095 12.5 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix POR_N PF01855.14 gi|294495222|ref|YP_003541715.1| - 5.3e-61 206.0 0.7 1.1e-60 204.9 0.1 1.9 3 0 0 3 3 3 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|294495222|ref|YP_003541715.1| - 3.3e-40 137.8 0.0 7.5e-40 136.6 0.0 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|294495222|ref|YP_003541715.1| - 1.2e-05 24.8 0.6 2e-05 24.1 0.4 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|294495222|ref|YP_003541715.1| - 0.042 13.7 0.0 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|294495223|ref|YP_003541716.1| - 7.5e-30 103.5 0.0 1.1e-29 102.9 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|294495223|ref|YP_003541716.1| - 6.6e-27 93.2 0.5 9.8e-27 92.6 0.0 1.5 2 0 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Fer4_5 PF12801.2 gi|294495224|ref|YP_003541717.1| - 5.1e-13 48.5 3.7 1.1e-10 41.1 0.1 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4 PF00037.22 gi|294495224|ref|YP_003541717.1| - 2.8e-10 39.3 20.7 1.2e-06 27.8 2.5 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294495224|ref|YP_003541717.1| - 9.1e-09 35.5 14.2 0.00037 20.8 1.6 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294495224|ref|YP_003541717.1| - 2.9e-08 33.2 19.9 0.00017 21.3 3.1 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|294495224|ref|YP_003541717.1| - 3.8e-08 33.4 28.8 7e-07 29.4 10.5 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294495224|ref|YP_003541717.1| - 1.9e-07 31.0 13.6 0.0016 18.4 3.1 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294495224|ref|YP_003541717.1| - 2.8e-07 30.2 20.0 0.0034 17.1 4.6 3.1 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294495224|ref|YP_003541717.1| - 6.6e-07 29.0 14.3 0.00048 19.9 2.2 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|294495224|ref|YP_003541717.1| - 2.3e-06 27.8 16.4 0.0061 16.8 4.0 3.3 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294495224|ref|YP_003541717.1| - 4.8e-06 26.9 21.2 0.001 19.4 2.7 3.3 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294495224|ref|YP_003541717.1| - 5.1e-06 26.0 20.0 0.0016 18.2 2.7 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|294495224|ref|YP_003541717.1| - 0.00013 22.0 14.9 0.00039 20.5 2.1 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|294495224|ref|YP_003541717.1| - 0.00019 21.7 26.2 0.00051 20.4 3.7 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|294495224|ref|YP_003541717.1| - 0.00074 20.2 19.4 0.0024 18.5 1.7 3.0 4 0 0 4 4 3 2 4Fe-4S double cluster binding domain Polysacc_synt PF01943.12 gi|294495224|ref|YP_003541717.1| - 0.17 11.1 12.4 0.14 11.3 3.9 2.0 1 1 1 2 2 2 0 Polysaccharide biosynthesis protein Fer4_13 PF13370.1 gi|294495224|ref|YP_003541717.1| - 0.4 11.1 18.0 0.58 10.5 2.9 2.7 2 1 1 3 3 2 0 4Fe-4S single cluster domain DUF1700 PF08006.6 gi|294495224|ref|YP_003541717.1| - 1.4 8.1 9.8 0.056 12.7 2.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) Fer4_15 PF13459.1 gi|294495224|ref|YP_003541717.1| - 2.9 8.5 14.4 2.7 8.6 2.7 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain TrmB PF01978.14 gi|294495225|ref|YP_003541718.1| - 8e-05 22.2 0.1 0.00012 21.7 0.1 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|294495225|ref|YP_003541718.1| - 0.00015 21.3 0.0 0.0002 20.9 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|294495225|ref|YP_003541718.1| - 0.00053 20.2 0.0 0.00084 19.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|294495225|ref|YP_003541718.1| - 0.0012 18.2 0.0 0.0024 17.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|294495225|ref|YP_003541718.1| - 0.0029 17.0 4.3 0.004 16.6 2.6 1.4 1 1 1 2 2 2 1 TFIIE alpha subunit Fe_dep_repress PF01325.14 gi|294495225|ref|YP_003541718.1| - 0.012 15.5 0.1 0.029 14.3 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|294495225|ref|YP_003541718.1| - 0.015 14.8 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rio2_N PF09202.6 gi|294495225|ref|YP_003541718.1| - 0.022 14.8 0.1 0.045 13.8 0.0 1.5 1 1 0 1 1 1 0 Rio2, N-terminal HTH_Crp_2 PF13545.1 gi|294495225|ref|YP_003541718.1| - 0.031 14.0 0.0 0.079 12.7 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_36 PF13730.1 gi|294495225|ref|YP_003541718.1| - 0.034 14.2 0.2 0.089 12.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.17 gi|294495225|ref|YP_003541718.1| - 0.05 13.3 0.2 0.099 12.3 0.1 1.4 1 0 0 1 1 1 0 MarR family Phage_rep_O PF04492.8 gi|294495225|ref|YP_003541718.1| - 0.057 13.6 0.1 0.12 12.6 0.0 1.5 1 1 0 1 1 1 0 Bacteriophage replication protein O Penicillinase_R PF03965.11 gi|294495225|ref|YP_003541718.1| - 0.082 13.0 0.1 0.11 12.6 0.1 1.3 1 0 0 1 1 1 0 Penicillinase repressor Swi5 PF07061.6 gi|294495225|ref|YP_003541718.1| - 0.67 9.7 3.0 2.8 7.7 2.1 1.9 1 1 1 2 2 2 0 Swi5 TPP_enzyme_C PF02775.16 gi|294495226|ref|YP_003541719.1| - 1.4e-28 99.3 2.3 2.3e-28 98.6 0.3 2.3 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|294495226|ref|YP_003541719.1| - 2.2e-15 56.8 0.0 3.7e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|294495226|ref|YP_003541719.1| - 8.1e-06 25.4 0.5 4.8e-05 22.8 0.1 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_10 PF13237.1 gi|294495226|ref|YP_003541719.1| - 8.2e-06 25.5 8.6 2.4e-05 24.0 5.9 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|294495226|ref|YP_003541719.1| - 1e-05 24.9 10.1 0.00085 18.8 1.9 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|294495226|ref|YP_003541719.1| - 7.9e-05 22.4 8.1 7.9e-05 22.4 5.6 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Transket_pyr PF02779.19 gi|294495226|ref|YP_003541719.1| - 9.6e-05 21.9 1.4 0.28 10.6 0.2 2.7 2 1 0 2 2 2 2 Transketolase, pyrimidine binding domain Fer4_2 PF12797.2 gi|294495226|ref|YP_003541719.1| - 0.0001 22.0 10.8 0.023 14.5 1.1 3.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|294495226|ref|YP_003541719.1| - 0.00034 20.8 9.2 0.0011 19.1 6.4 2.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294495226|ref|YP_003541719.1| - 0.00034 20.9 8.4 0.00034 20.9 5.8 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294495226|ref|YP_003541719.1| - 0.0025 18.0 10.8 0.19 12.1 1.5 3.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294495226|ref|YP_003541719.1| - 0.0032 17.2 17.2 0.032 14.1 1.8 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain DXP_synthase_N PF13292.1 gi|294495226|ref|YP_003541719.1| - 0.018 14.0 0.2 4.3 6.2 0.1 2.2 1 1 1 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_17 PF13534.1 gi|294495226|ref|YP_003541719.1| - 1.8 9.0 10.7 3.1 8.2 1.4 2.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|294495226|ref|YP_003541719.1| - 2.4 8.7 13.1 5.8 7.5 0.8 3.4 2 1 1 3 3 3 0 4Fe-4S single cluster domain POR PF01558.13 gi|294495227|ref|YP_003541720.1| - 2e-33 115.7 0.0 2.4e-33 115.5 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase OGG_N PF07934.7 gi|294495228|ref|YP_003541721.1| - 5.5e-22 77.9 0.1 1.3e-21 76.7 0.1 1.6 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|294495228|ref|YP_003541721.1| - 8.9e-07 29.1 0.0 1.3e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|294495228|ref|YP_003541721.1| - 0.00089 18.8 0.0 0.002 17.6 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Mso1_Sec1_bdg PF14475.1 gi|294495228|ref|YP_003541721.1| - 0.019 14.3 2.4 0.066 12.6 0.0 2.8 3 0 0 3 3 3 0 Sec1-binding region of Mso1 HHH_2 PF12826.2 gi|294495228|ref|YP_003541721.1| - 0.022 14.6 0.0 0.25 11.2 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif tRNA_NucTransf2 PF09249.6 gi|294495229|ref|YP_003541722.1| - 1.4e-43 147.4 0.0 2.7e-43 146.4 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|294495229|ref|YP_003541722.1| - 2.2e-09 37.5 0.0 1.4e-08 34.9 0.0 2.4 1 1 1 2 2 2 1 Nucleotidyltransferase domain Ferritin PF00210.19 gi|294495230|ref|YP_003541723.1| - 2.2e-39 134.4 3.5 2.5e-39 134.2 2.4 1.0 1 0 0 1 1 1 1 Ferritin-like domain Apc4 PF12896.2 gi|294495230|ref|YP_003541723.1| - 0.00043 19.6 0.9 0.0016 17.7 0.1 1.9 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 4 Apc5 PF12862.2 gi|294495230|ref|YP_003541723.1| - 0.0011 18.7 0.2 0.0031 17.3 0.1 1.7 1 1 0 1 1 1 1 Anaphase-promoting complex subunit 5 Lipoprotein_10 PF03202.8 gi|294495230|ref|YP_003541723.1| - 0.086 12.8 0.8 0.2 11.6 0.2 1.8 2 0 0 2 2 2 0 Putative mycoplasma lipoprotein, C-terminal region Desulfoferrodox PF01880.13 gi|294495231|ref|YP_003541724.1| - 2.1e-22 79.2 0.1 2.7e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 Desulfoferrodoxin CMD PF02627.15 gi|294495232|ref|YP_003541725.1| - 4.7e-11 42.3 0.0 5.5e-11 42.1 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PPR_2 PF13041.1 gi|294495232|ref|YP_003541725.1| - 0.017 15.0 0.0 0.037 13.9 0.0 1.5 1 0 0 1 1 1 0 PPR repeat family PPR PF01535.15 gi|294495232|ref|YP_003541725.1| - 0.08 12.9 0.0 1.2 9.2 0.0 2.6 2 0 0 2 2 2 0 PPR repeat DUF3541 PF12060.3 gi|294495232|ref|YP_003541725.1| - 0.13 11.4 0.1 0.33 10.2 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3541) AhpC-TSA PF00578.16 gi|294495233|ref|YP_003541726.1| - 6.5e-35 119.5 0.1 8.5e-35 119.1 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|294495233|ref|YP_003541726.1| - 4.7e-15 55.3 0.0 6.9e-15 54.8 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|294495233|ref|YP_003541726.1| - 9.3e-15 53.9 0.5 2.2e-14 52.8 0.4 1.7 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin DUF4511 PF14974.1 gi|294495233|ref|YP_003541726.1| - 0.027 14.1 0.1 0.051 13.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4511) DUF2892 PF11127.3 gi|294495234|ref|YP_003541727.1| - 1.6e-14 53.5 0.2 1.8e-14 53.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Radical_SAM PF04055.16 gi|294495235|ref|YP_003541728.1| - 2.4e-22 79.8 0.1 2.9e-21 76.3 0.0 2.3 2 1 1 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|294495235|ref|YP_003541728.1| - 6.7e-12 45.7 0.0 1.3e-11 44.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|294495235|ref|YP_003541728.1| - 3e-09 36.9 0.0 6.1e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Pterin_bind PF00809.17 gi|294495235|ref|YP_003541728.1| - 3.8e-05 23.1 0.0 0.074 12.4 0.0 2.3 1 1 1 2 2 2 2 Pterin binding enzyme PDDEXK_1 PF12705.2 gi|294495235|ref|YP_003541728.1| - 0.06 12.7 0.0 1.4 8.2 0.0 2.4 1 1 0 1 1 1 0 PD-(D/E)XK nuclease superfamily HEM4 PF02602.10 gi|294495236|ref|YP_003541729.1| - 6.7e-43 146.5 0.0 7.5e-43 146.4 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TP_methylase PF00590.15 gi|294495237|ref|YP_003541730.1| - 2.9e-53 180.6 0.0 3.4e-53 180.4 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|294495237|ref|YP_003541730.1| - 0.048 13.8 0.2 0.29 11.3 0.1 2.2 1 1 0 1 1 1 0 Radical SAM superfamily DUF1699 PF08004.6 gi|294495238|ref|YP_003541731.1| - 3.6e-63 210.9 2.6 4e-63 210.7 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Img2 PF05046.9 gi|294495238|ref|YP_003541731.1| - 0.026 14.7 0.1 0.038 14.1 0.0 1.4 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) Arc_PepC PF06819.6 gi|294495238|ref|YP_003541731.1| - 0.68 9.8 4.6 3.3 7.6 0.4 2.2 1 1 0 2 2 2 0 Archaeal Peptidase A24 C-terminal Domain Histidinol_dh PF00815.15 gi|294495239|ref|YP_003541732.1| - 8.7e-168 558.2 0.3 1.1e-167 557.9 0.2 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DEAD PF00270.24 gi|294495240|ref|YP_003541733.1| - 4.4e-28 97.8 0.0 1e-27 96.6 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|294495240|ref|YP_003541733.1| - 7.6e-10 38.5 0.0 2.8e-09 36.7 0.0 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.1 gi|294495240|ref|YP_003541733.1| - 2.6e-09 37.1 0.1 2e-08 34.2 0.1 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain ResIII PF04851.10 gi|294495240|ref|YP_003541733.1| - 1.5e-06 28.1 0.0 8.3e-06 25.7 0.0 2.2 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Sec63 PF02889.11 gi|294495240|ref|YP_003541733.1| - 2.2e-06 27.1 0.1 3.5e-06 26.4 0.1 1.2 1 0 0 1 1 1 1 Sec63 Brl domain HHH_2 PF12826.2 gi|294495240|ref|YP_003541733.1| - 5.4e-06 26.1 0.0 2e-05 24.4 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|294495240|ref|YP_003541733.1| - 0.0071 15.9 0.1 2.3 8.0 0.0 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|294495240|ref|YP_003541733.1| - 0.055 13.0 0.0 0.18 11.3 0.0 1.9 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda HemN_C PF06969.11 gi|294495240|ref|YP_003541733.1| - 0.063 13.3 0.5 0.18 11.8 0.1 2.0 2 0 0 2 2 2 0 HemN C-terminal domain Cdd1 PF11731.3 gi|294495240|ref|YP_003541733.1| - 0.064 13.1 0.0 0.18 11.7 0.0 1.8 1 0 0 1 1 1 0 Pathogenicity locus MS_channel PF00924.13 gi|294495241|ref|YP_003541734.1| - 1.9e-40 138.4 0.3 1.9e-40 138.4 0.2 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel UPF0182 PF03699.8 gi|294495241|ref|YP_003541734.1| - 0.00075 17.5 1.2 0.00092 17.2 0.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0182) PALP PF00291.20 gi|294495242|ref|YP_003541735.1| - 4.8e-36 124.5 0.0 6e-36 124.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Pyr_excise PF03013.9 gi|294495243|ref|YP_003541736.1| - 0.014 15.1 2.0 0.023 14.4 1.3 1.5 1 1 0 1 1 1 0 Pyrimidine dimer DNA glycosylase YkyA PF10368.4 gi|294495243|ref|YP_003541736.1| - 9.3 5.5 9.5 1.9 7.8 4.2 1.6 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein HMG-CoA_red PF00368.13 gi|294495244|ref|YP_003541737.1| - 1.4e-142 474.7 3.6 1.7e-142 474.5 2.5 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DNA_ligase_A_M PF01068.16 gi|294495245|ref|YP_003541738.1| - 1.7e-56 190.7 0.1 2.5e-56 190.2 0.1 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|294495245|ref|YP_003541738.1| - 3.4e-43 147.5 0.0 3.7e-42 144.1 0.0 2.4 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|294495245|ref|YP_003541738.1| - 4.1e-18 65.5 0.0 1.2e-17 64.1 0.0 1.8 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.14 gi|294495245|ref|YP_003541738.1| - 0.0017 18.0 0.1 0.42 10.2 0.1 3.1 2 1 0 2 2 2 1 mRNA capping enzyme, catalytic domain Homoserine_dh PF00742.14 gi|294495246|ref|YP_003541739.1| - 5e-59 198.9 1.2 6e-58 195.4 0.2 2.1 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|294495246|ref|YP_003541739.1| - 2.6e-11 43.9 0.2 5.2e-11 42.9 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|294495246|ref|YP_003541739.1| - 0.00027 20.5 1.3 0.00059 19.4 0.8 1.8 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFO_IDH_MocA PF01408.17 gi|294495246|ref|YP_003541739.1| - 0.042 14.3 0.1 0.1 13.1 0.0 1.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold 3HCDH_N PF02737.13 gi|294495246|ref|YP_003541739.1| - 0.07 12.7 0.5 0.12 12.0 0.3 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ACT PF01842.20 gi|294495247|ref|YP_003541740.1| - 0.017 14.5 0.1 0.065 12.7 0.0 1.9 2 0 0 2 2 2 0 ACT domain Glyoxalase_2 PF12681.2 gi|294495247|ref|YP_003541740.1| - 0.11 13.1 0.0 0.14 12.7 0.0 1.4 1 0 0 1 1 1 0 Glyoxalase-like domain Sigma70_r1_1 PF03979.9 gi|294495247|ref|YP_003541740.1| - 0.12 12.3 0.5 0.33 10.9 0.3 1.7 1 1 0 1 1 1 0 Sigma-70 factor, region 1.1 HTH_24 PF13412.1 gi|294495248|ref|YP_003541741.1| - 3.1e-06 26.4 0.8 5.9e-06 25.5 0.6 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|294495248|ref|YP_003541741.1| - 9.9e-05 21.9 0.0 0.0002 20.9 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|294495248|ref|YP_003541741.1| - 0.00021 20.9 0.1 0.00053 19.6 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|294495248|ref|YP_003541741.1| - 0.0031 17.7 0.1 0.0082 16.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain TMEM154 PF15102.1 gi|294495248|ref|YP_003541741.1| - 0.0051 16.5 3.2 0.42 10.3 0.2 2.4 1 1 1 2 2 2 2 TMEM154 protein family FeoC PF09012.5 gi|294495248|ref|YP_003541741.1| - 0.0076 15.9 0.1 0.013 15.1 0.1 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_11 PF08279.7 gi|294495248|ref|YP_003541741.1| - 0.022 14.3 0.1 0.044 13.4 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.1 gi|294495248|ref|YP_003541741.1| - 0.035 13.8 0.2 0.075 12.8 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain SID-1_RNA_chan PF13965.1 gi|294495248|ref|YP_003541741.1| - 0.068 11.3 1.0 0.08 11.1 0.7 1.1 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 Viral_Beta_CD PF04530.7 gi|294495248|ref|YP_003541741.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Viral Beta C/D like family phage_tail_N PF08400.5 gi|294495248|ref|YP_003541741.1| - 0.12 12.1 0.1 0.23 11.1 0.1 1.6 1 1 0 1 1 1 0 Prophage tail fibre N-terminal Snf7 PF03357.16 gi|294495249|ref|YP_003541742.1| - 0.00079 18.8 3.8 0.00079 18.8 2.6 4.1 3 2 1 5 5 5 1 Snf7 SusE PF14292.1 gi|294495249|ref|YP_003541742.1| - 0.014 15.2 3.9 0.81 9.5 0.3 2.8 2 0 0 2 2 2 0 SusE outer membrane protein Glycos_trans_3N PF02885.12 gi|294495249|ref|YP_003541742.1| - 0.04 13.5 0.3 2.7 7.6 0.0 3.3 3 0 0 3 3 3 0 Glycosyl transferase family, helical bundle domain PilJ PF13675.1 gi|294495249|ref|YP_003541742.1| - 3.1 8.1 10.3 1.4 9.2 1.0 3.2 1 1 2 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF2700 PF10912.3 gi|294495250|ref|YP_003541743.1| - 0.038 13.9 0.0 0.047 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2700) IncA PF04156.9 gi|294495250|ref|YP_003541743.1| - 0.1 12.2 0.1 0.12 11.9 0.0 1.0 1 0 0 1 1 1 0 IncA protein FCD PF07729.7 gi|294495251|ref|YP_003541744.1| - 0.15 12.3 11.3 2.3 8.5 4.9 2.6 2 1 0 2 2 2 0 FCD domain DUF1677 PF07911.8 gi|294495251|ref|YP_003541744.1| - 0.32 11.1 3.0 3.1 8.0 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1677) DUF664 PF04978.7 gi|294495251|ref|YP_003541744.1| - 0.85 9.8 6.7 0.13 12.4 0.8 2.2 1 1 2 3 3 3 0 Protein of unknown function (DUF664) Prominin PF05478.6 gi|294495252|ref|YP_003541745.1| - 0.0014 16.3 0.2 0.0014 16.3 0.2 1.0 1 0 0 1 1 1 1 Prominin OppC_N PF12911.2 gi|294495252|ref|YP_003541745.1| - 4.6 6.6 5.8 5.6 6.4 4.0 1.2 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C Peptidase_M48 PF01435.13 gi|294495253|ref|YP_003541746.1| - 2.5e-38 131.9 0.1 3.2e-38 131.5 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|294495253|ref|YP_003541746.1| - 3.3e-05 23.0 0.0 8.8e-05 21.6 0.0 1.8 2 0 0 2 2 2 1 BlaR1 peptidase M56 BSP PF04450.7 gi|294495253|ref|YP_003541746.1| - 0.0069 15.8 0.1 0.01 15.3 0.1 1.2 1 0 0 1 1 1 1 Peptidase of plants and bacteria DUF4157 PF13699.1 gi|294495253|ref|YP_003541746.1| - 0.018 15.1 0.7 0.063 13.4 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) DUF1282 PF06930.7 gi|294495253|ref|YP_003541746.1| - 0.23 11.1 4.6 0.13 11.9 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1282) DUF488 PF04343.8 gi|294495254|ref|YP_003541747.1| - 3.9e-20 72.4 0.4 6.7e-19 68.4 0.3 2.1 1 1 0 1 1 1 1 Protein of unknown function, DUF488 Thymidylat_synt PF00303.14 gi|294495255|ref|YP_003541748.1| - 4.4e-35 120.9 0.4 1.2e-33 116.2 0.2 2.0 1 1 1 2 2 2 2 Thymidylate synthase DUF1823 PF08853.6 gi|294495255|ref|YP_003541748.1| - 0.053 13.2 0.2 0.17 11.6 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1823) EPSP_synthase PF00275.15 gi|294495256|ref|YP_003541749.1| - 4.6e-112 374.5 0.2 5.6e-112 374.2 0.2 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FAD_binding_3 PF01494.14 gi|294495257|ref|YP_003541750.1| - 5.2e-17 61.9 0.3 5.9e-10 38.7 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|294495257|ref|YP_003541750.1| - 1.4e-10 40.8 1.7 2e-10 40.3 1.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|294495257|ref|YP_003541750.1| - 3.2e-10 39.4 0.1 1.8e-09 37.0 0.1 2.0 1 1 0 1 1 1 1 Lycopene cyclase protein DAO PF01266.19 gi|294495257|ref|YP_003541750.1| - 6.3e-10 38.4 3.3 8.2e-06 24.9 0.9 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|294495257|ref|YP_003541750.1| - 2.8e-07 30.6 0.6 6.4e-07 29.4 0.4 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|294495257|ref|YP_003541750.1| - 1.6e-06 26.8 1.0 2.3e-05 23.0 0.3 2.2 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|294495257|ref|YP_003541750.1| - 1.9e-05 23.9 0.2 3.8e-05 22.9 0.1 1.5 1 0 0 1 1 1 1 Thi4 family Trp_halogenase PF04820.9 gi|294495257|ref|YP_003541750.1| - 3.4e-05 22.6 0.9 0.006 15.2 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_8 PF13450.1 gi|294495257|ref|YP_003541750.1| - 0.00012 22.0 0.9 0.00042 20.2 0.6 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|294495257|ref|YP_003541750.1| - 0.0012 17.7 0.9 0.0024 16.8 0.7 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|294495257|ref|YP_003541750.1| - 0.0013 19.1 1.1 0.63 10.4 0.3 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|294495257|ref|YP_003541750.1| - 0.0018 18.4 0.4 0.0052 16.8 0.3 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|294495257|ref|YP_003541750.1| - 0.0045 15.8 6.3 0.021 13.6 2.6 2.1 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.13 gi|294495257|ref|YP_003541750.1| - 0.014 15.0 1.6 0.017 14.8 0.4 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|294495257|ref|YP_003541750.1| - 0.047 13.5 0.1 2.7 7.8 0.1 3.0 3 0 0 3 3 3 0 ThiF family ACT PF01842.20 gi|294495258|ref|YP_003541751.1| - 3.2e-05 23.3 0.3 0.00011 21.5 0.2 1.9 1 1 0 1 1 1 1 ACT domain HMGL-like PF00682.14 gi|294495259|ref|YP_003541752.1| - 1.3e-31 110.1 0.0 2.1e-31 109.4 0.0 1.3 1 0 0 1 1 1 1 HMGL-like Sigma54_DBD PF04552.8 gi|294495259|ref|YP_003541752.1| - 0.029 13.8 0.1 3.2 7.2 0.1 2.2 2 0 0 2 2 2 0 Sigma-54, DNA binding domain Iso_dh PF00180.15 gi|294495260|ref|YP_003541753.1| - 3.3e-85 286.1 0.0 4e-85 285.8 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Acetyltransf_CG PF14542.1 gi|294495260|ref|YP_003541753.1| - 0.035 13.9 0.0 0.19 11.6 0.0 2.1 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase TatD_DNase PF01026.16 gi|294495261|ref|YP_003541754.1| - 1.6e-22 79.9 0.0 1.9e-22 79.6 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase CMD PF02627.15 gi|294495262|ref|YP_003541755.1| - 1.2e-22 79.5 0.1 1.3e-22 79.3 0.1 1.0 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Desulfoferrodox PF01880.13 gi|294495263|ref|YP_003541756.1| - 4.4e-11 42.9 0.2 5.2e-11 42.6 0.2 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin DUF21 PF01595.15 gi|294495264|ref|YP_003541757.1| - 3.4e-33 114.4 3.8 4.9e-33 113.9 2.6 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 DUF378 PF04070.7 gi|294495265|ref|YP_003541758.1| - 3.6e-19 68.1 7.7 4e-19 67.9 5.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF378) DUF981 PF06168.6 gi|294495265|ref|YP_003541758.1| - 1.1 8.9 6.6 7.8 6.2 0.4 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF981) PsbT PF01405.12 gi|294495265|ref|YP_003541758.1| - 5.5 6.6 6.3 1.2 8.7 1.5 1.9 2 0 0 2 2 2 0 Photosystem II reaction centre T protein ABC_tran PF00005.22 gi|294495266|ref|YP_003541759.1| - 1.9e-19 70.3 0.1 2e-08 34.5 0.0 4.3 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|294495266|ref|YP_003541759.1| - 4.6e-12 45.6 0.0 0.043 13.0 0.0 4.4 4 1 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|294495266|ref|YP_003541759.1| - 5.8e-08 33.0 12.3 0.00052 20.0 0.0 4.3 4 0 0 4 4 4 2 AAA domain AAA_16 PF13191.1 gi|294495266|ref|YP_003541759.1| - 3.2e-07 30.5 0.0 0.002 18.1 0.0 3.0 3 0 0 3 3 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|294495266|ref|YP_003541759.1| - 4.6e-07 29.2 0.0 0.013 14.9 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain DnaJ_CXXCXGXG PF00684.14 gi|294495266|ref|YP_003541759.1| - 9.4e-07 28.7 4.2 0.017 15.1 0.2 3.6 3 0 0 3 3 3 2 DnaJ central domain DUF258 PF03193.11 gi|294495266|ref|YP_003541759.1| - 1.8e-06 27.2 0.3 0.053 12.6 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|294495266|ref|YP_003541759.1| - 3.2e-06 27.4 0.1 0.035 14.4 0.0 3.2 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|294495266|ref|YP_003541759.1| - 4.3e-06 27.5 5.5 0.017 15.9 0.0 3.8 4 0 0 4 4 2 2 AAA domain AAA_22 PF13401.1 gi|294495266|ref|YP_003541759.1| - 4.5e-06 26.8 2.9 0.11 12.6 0.0 4.7 5 0 0 5 5 5 2 AAA domain AAA_14 PF13173.1 gi|294495266|ref|YP_003541759.1| - 1.9e-05 24.5 0.1 0.47 10.3 0.0 3.3 3 0 0 3 3 3 2 AAA domain AAA_33 PF13671.1 gi|294495266|ref|YP_003541759.1| - 3.2e-05 23.8 0.0 0.22 11.3 0.0 3.2 4 0 0 4 4 2 2 AAA domain AAA_23 PF13476.1 gi|294495266|ref|YP_003541759.1| - 3.5e-05 24.2 0.4 0.069 13.4 0.1 2.6 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|294495266|ref|YP_003541759.1| - 7.2e-05 22.5 0.4 0.33 10.6 0.0 3.0 3 0 0 3 3 3 2 Archaeal ATPase Viral_helicase1 PF01443.13 gi|294495266|ref|YP_003541759.1| - 7.8e-05 22.3 0.1 0.0029 17.1 0.0 2.7 3 0 0 3 3 2 1 Viral (Superfamily 1) RNA helicase AAA_10 PF12846.2 gi|294495266|ref|YP_003541759.1| - 0.00011 21.7 0.2 0.068 12.5 0.0 2.9 3 0 0 3 3 3 1 AAA-like domain APS_kinase PF01583.15 gi|294495266|ref|YP_003541759.1| - 0.00012 21.7 0.6 0.5 10.0 0.0 2.9 3 0 0 3 3 2 2 Adenylylsulphate kinase AAA_25 PF13481.1 gi|294495266|ref|YP_003541759.1| - 0.00013 21.4 0.1 0.036 13.4 0.0 2.8 3 0 0 3 3 2 1 AAA domain MobB PF03205.9 gi|294495266|ref|YP_003541759.1| - 0.00016 21.4 0.5 0.012 15.2 0.1 2.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|294495266|ref|YP_003541759.1| - 0.0002 20.3 0.2 0.097 11.5 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|294495266|ref|YP_003541759.1| - 0.00071 19.5 0.5 0.12 12.3 0.0 3.1 3 0 0 3 3 2 1 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|294495266|ref|YP_003541759.1| - 0.00073 18.6 3.2 0.79 8.6 0.0 4.1 4 0 0 4 4 4 1 AAA ATPase domain PRK PF00485.13 gi|294495266|ref|YP_003541759.1| - 0.0014 18.2 0.1 0.28 10.7 0.0 2.5 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family DUF2075 PF09848.4 gi|294495266|ref|YP_003541759.1| - 0.0014 17.7 0.0 0.56 9.1 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) cobW PF02492.14 gi|294495266|ref|YP_003541759.1| - 0.0017 17.8 0.3 0.083 12.3 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|294495266|ref|YP_003541759.1| - 0.0038 16.9 0.0 0.58 9.8 0.0 2.5 2 0 0 2 2 2 1 NACHT domain AAA_19 PF13245.1 gi|294495266|ref|YP_003541759.1| - 0.0051 16.5 0.0 3.9 7.2 0.0 2.7 2 0 0 2 2 2 0 Part of AAA domain Zeta_toxin PF06414.7 gi|294495266|ref|YP_003541759.1| - 0.0096 15.0 0.0 4.6 6.2 0.0 2.5 2 0 0 2 2 2 0 Zeta toxin ArgK PF03308.11 gi|294495266|ref|YP_003541759.1| - 0.01 14.6 0.1 0.27 9.9 0.0 2.6 3 0 0 3 3 2 0 ArgK protein NTPase_1 PF03266.10 gi|294495266|ref|YP_003541759.1| - 0.019 14.6 1.7 0.38 10.4 0.1 3.2 3 0 0 3 3 3 0 NTPase KaiC PF06745.8 gi|294495266|ref|YP_003541759.1| - 0.024 13.7 0.0 4.4 6.3 0.0 2.5 2 0 0 2 2 2 0 KaiC RNA_helicase PF00910.17 gi|294495266|ref|YP_003541759.1| - 0.027 14.6 0.1 1.8 8.7 0.0 2.4 2 0 0 2 2 2 0 RNA helicase Miro PF08477.8 gi|294495266|ref|YP_003541759.1| - 0.033 14.6 0.1 10 6.6 0.0 2.8 2 0 0 2 2 2 0 Miro-like protein AAA_28 PF13521.1 gi|294495266|ref|YP_003541759.1| - 0.034 14.1 0.1 4.6 7.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain BCA_ABC_TP_C PF12399.3 gi|294495266|ref|YP_003541759.1| - 0.035 13.8 0.2 0.18 11.5 0.0 2.2 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter Sigma54_activat PF00158.21 gi|294495266|ref|YP_003541759.1| - 0.049 13.0 0.1 2.2 7.7 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain Septin PF00735.13 gi|294495266|ref|YP_003541759.1| - 0.061 12.3 0.2 0.13 11.3 0.0 1.6 2 0 0 2 2 1 0 Septin RNA12 PF10443.4 gi|294495266|ref|YP_003541759.1| - 0.075 11.5 0.0 5.8 5.3 0.0 2.2 2 0 0 2 2 2 0 RNA12 protein AAA_24 PF13479.1 gi|294495266|ref|YP_003541759.1| - 0.088 12.3 0.1 5.7 6.4 0.0 3.0 3 0 0 3 3 3 0 AAA domain IIGP PF05049.8 gi|294495266|ref|YP_003541759.1| - 0.096 11.4 0.1 0.51 9.1 0.0 1.9 2 0 0 2 2 2 0 Interferon-inducible GTPase (IIGP) AAA_30 PF13604.1 gi|294495266|ref|YP_003541759.1| - 0.11 12.0 0.1 17 4.9 0.0 2.7 3 0 0 3 3 2 0 AAA domain KAP_NTPase PF07693.9 gi|294495266|ref|YP_003541759.1| - 0.13 11.1 0.2 11 4.8 0.0 3.2 4 0 0 4 4 4 0 KAP family P-loop domain NB-ARC PF00931.17 gi|294495266|ref|YP_003541759.1| - 0.14 10.9 0.1 3 6.6 0.0 2.7 3 0 0 3 3 3 0 NB-ARC domain SbcCD_C PF13558.1 gi|294495266|ref|YP_003541759.1| - 0.2 11.6 0.3 37 4.3 0.0 3.0 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit zf-ribbon_3 PF13248.1 gi|294495266|ref|YP_003541759.1| - 0.35 10.1 8.1 3.5 6.9 0.2 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Herpes_Helicase PF02689.9 gi|294495266|ref|YP_003541759.1| - 0.38 8.4 0.0 1.4 6.6 0.0 1.7 2 0 0 2 2 2 0 Helicase Lar_restr_allev PF14354.1 gi|294495266|ref|YP_003541759.1| - 0.43 10.9 12.8 12 6.3 0.1 4.5 4 1 0 4 4 4 0 Restriction alleviation protein Lar zf-RING_3 PF14369.1 gi|294495266|ref|YP_003541759.1| - 0.98 9.4 6.1 0.95 9.5 0.2 3.1 3 0 0 3 3 3 0 zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|294495266|ref|YP_003541759.1| - 3.3 7.5 8.1 29 4.5 0.0 4.2 4 1 1 5 5 3 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|294495266|ref|YP_003541759.1| - 5.7 6.8 9.9 11 5.9 0.3 3.7 4 0 0 4 4 4 0 Double zinc ribbon FmdE PF02663.9 gi|294495268|ref|YP_003541761.1| - 5.8e-43 145.9 0.1 7.1e-43 145.6 0.1 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|294495268|ref|YP_003541761.1| - 1.9e-07 30.6 0.3 4.5e-07 29.4 0.2 1.6 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.17 gi|294495268|ref|YP_003541761.1| - 0.014 15.4 0.9 0.035 14.1 0.6 1.7 1 0 0 1 1 1 0 LIM domain Lyase_1 PF00206.15 gi|294495269|ref|YP_003541762.1| - 3e-57 194.1 0.8 5.3e-57 193.3 0.5 1.3 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|294495269|ref|YP_003541762.1| - 1.3e-26 92.4 0.7 3.7e-26 90.9 0.1 2.0 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C2 PF14698.1 gi|294495269|ref|YP_003541762.1| - 6.7e-05 22.8 0.7 0.048 13.7 0.0 3.5 3 0 0 3 3 3 1 Argininosuccinate lyase C-terminal FumaraseC_C PF10415.4 gi|294495269|ref|YP_003541762.1| - 0.0013 18.7 0.0 0.0055 16.7 0.0 2.2 1 0 0 1 1 1 1 Fumarase C C-terminus cwf21 PF08312.7 gi|294495269|ref|YP_003541762.1| - 0.022 14.6 0.7 0.92 9.4 0.0 2.9 1 1 1 2 2 2 0 cwf21 domain FTR1 PF03239.9 gi|294495270|ref|YP_003541763.1| - 1.3e-43 149.0 16.7 1.6e-43 148.8 11.6 1.1 1 0 0 1 1 1 1 Iron permease FTR1 family T4_tail_cap PF11091.3 gi|294495270|ref|YP_003541763.1| - 0.092 11.4 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 Tail-tube assembly protein Claudin_2 PF13903.1 gi|294495270|ref|YP_003541763.1| - 1.3 8.6 15.3 0.087 12.5 1.9 2.2 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction MARVEL PF01284.18 gi|294495270|ref|YP_003541763.1| - 2.3 8.0 9.2 9.8 5.9 0.2 2.2 2 0 0 2 2 2 0 Membrane-associating domain Pox_A14 PF05767.7 gi|294495270|ref|YP_003541763.1| - 2.5 8.1 13.0 0.51 10.3 0.3 3.6 2 1 2 4 4 4 0 Poxvirus virion envelope protein A14 DUF4131 PF13567.1 gi|294495270|ref|YP_003541763.1| - 8.8 5.7 8.2 18 4.7 0.2 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) HATPase_c PF02518.21 gi|294495271|ref|YP_003541764.1| - 1.1e-31 108.8 0.1 2.3e-31 107.7 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|294495271|ref|YP_003541764.1| - 3.9e-22 78.6 0.3 1.5e-09 38.1 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|294495271|ref|YP_003541764.1| - 5.5e-20 71.2 0.1 1.2e-09 37.9 0.0 2.5 2 0 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|294495271|ref|YP_003541764.1| - 1.4e-18 66.5 0.0 3.8e-18 65.2 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|294495271|ref|YP_003541764.1| - 4.3e-16 58.9 0.0 2e-08 34.2 0.0 2.8 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|294495271|ref|YP_003541764.1| - 1.3e-15 56.6 0.0 5.9e-07 29.1 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|294495271|ref|YP_003541764.1| - 2.2e-10 40.4 0.0 1.1e-09 38.1 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_10 PF13596.1 gi|294495271|ref|YP_003541764.1| - 1.9e-05 24.8 0.2 0.00016 21.8 0.0 2.4 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|294495271|ref|YP_003541764.1| - 0.0008 19.0 0.1 0.0018 17.9 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|294495271|ref|YP_003541764.1| - 0.0012 18.4 1.4 0.0023 17.5 0.1 2.0 2 0 0 2 2 2 1 GHKL domain PAS_7 PF12860.2 gi|294495271|ref|YP_003541764.1| - 0.0034 17.3 0.2 0.028 14.4 0.0 2.4 2 1 0 2 2 2 1 PAS fold ABC_tran PF00005.22 gi|294495272|ref|YP_003541765.1| - 6.8e-31 107.3 0.0 9.1e-31 106.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|294495272|ref|YP_003541765.1| - 2.2e-09 37.7 0.3 0.00079 19.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|294495272|ref|YP_003541765.1| - 1.6e-06 27.4 0.0 0.017 14.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|294495272|ref|YP_003541765.1| - 7.8e-06 26.3 0.1 1.6e-05 25.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|294495272|ref|YP_003541765.1| - 2e-05 24.0 0.0 4.3e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|294495272|ref|YP_003541765.1| - 4.5e-05 22.7 0.2 0.0026 17.0 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|294495272|ref|YP_003541765.1| - 0.00051 19.2 0.0 0.00082 18.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|294495272|ref|YP_003541765.1| - 0.00077 19.5 0.0 0.0019 18.1 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|294495272|ref|YP_003541765.1| - 0.0061 15.7 0.0 0.0099 15.0 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Arch_ATPase PF01637.13 gi|294495272|ref|YP_003541765.1| - 0.0071 16.0 0.2 0.01 15.5 0.1 1.6 1 1 0 1 1 1 1 Archaeal ATPase SbcCD_C PF13558.1 gi|294495272|ref|YP_003541765.1| - 0.0082 16.0 0.0 0.062 13.2 0.0 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit UPF0079 PF02367.12 gi|294495272|ref|YP_003541765.1| - 0.011 15.3 0.0 0.053 13.1 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|294495272|ref|YP_003541765.1| - 0.012 15.0 0.2 0.79 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_13 PF13166.1 gi|294495272|ref|YP_003541765.1| - 0.013 13.9 0.1 2.8 6.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|294495272|ref|YP_003541765.1| - 0.016 14.9 0.5 2 8.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|294495272|ref|YP_003541765.1| - 0.019 14.6 0.0 0.039 13.7 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|294495272|ref|YP_003541765.1| - 0.019 14.8 0.1 0.11 12.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|294495272|ref|YP_003541765.1| - 0.019 14.6 0.0 0.039 13.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.1 gi|294495272|ref|YP_003541765.1| - 0.02 15.0 0.6 0.094 12.8 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|294495272|ref|YP_003541765.1| - 0.032 13.6 0.1 0.051 12.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|294495272|ref|YP_003541765.1| - 0.034 14.3 0.1 0.12 12.6 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|294495272|ref|YP_003541765.1| - 0.044 12.6 0.1 0.23 10.2 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain ABC_ATPase PF09818.4 gi|294495272|ref|YP_003541765.1| - 0.051 12.1 0.1 2.1 6.8 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class MobB PF03205.9 gi|294495272|ref|YP_003541765.1| - 0.12 12.0 0.1 0.3 10.7 0.1 1.7 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B FecCD PF01032.13 gi|294495273|ref|YP_003541766.1| - 2.2e-92 309.2 29.1 2.7e-92 308.9 20.2 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|294495273|ref|YP_003541766.1| - 5.7e-08 32.3 15.1 5.7e-08 32.3 10.5 1.6 2 0 0 2 2 2 1 ABC 3 transport family Peptidase_M50 PF02163.17 gi|294495273|ref|YP_003541766.1| - 3.7 6.4 5.6 4.2 6.2 2.5 2.2 1 1 2 3 3 3 0 Peptidase family M50 Peripla_BP_2 PF01497.13 gi|294495274|ref|YP_003541767.1| - 1.6e-15 56.8 0.0 3.2e-15 55.9 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein FAD_binding_4 PF01565.18 gi|294495275|ref|YP_003541768.1| - 3.4e-34 117.3 0.3 1.8e-33 114.9 0.0 2.3 3 0 0 3 3 3 1 FAD binding domain CCG PF02754.11 gi|294495275|ref|YP_003541768.1| - 2.3e-33 114.0 3.9 1.9e-16 59.8 0.3 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_17 PF13534.1 gi|294495275|ref|YP_003541768.1| - 1.3e-08 35.0 6.0 1.3e-08 35.0 4.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294495275|ref|YP_003541768.1| - 2.8e-06 27.2 6.2 8.9e-06 25.6 4.3 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294495275|ref|YP_003541768.1| - 0.013 15.8 6.1 0.042 14.2 4.2 1.9 1 0 0 1 1 1 0 4Fe-4S dicluster domain FAD-oxidase_C PF02913.14 gi|294495275|ref|YP_003541768.1| - 0.016 14.5 0.0 0.12 11.6 0.0 2.3 1 1 0 1 1 1 0 FAD linked oxidases, C-terminal domain Fer4_9 PF13187.1 gi|294495275|ref|YP_003541768.1| - 0.049 13.8 9.7 0.054 13.7 5.1 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Nucleic_acid_bd PF13820.1 gi|294495275|ref|YP_003541768.1| - 0.096 12.2 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 Putative nucleic acid-binding region Fer4_10 PF13237.1 gi|294495275|ref|YP_003541768.1| - 0.56 10.0 10.7 1.1 9.1 6.4 2.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294495275|ref|YP_003541768.1| - 7.3 7.0 10.7 20 5.7 0.2 3.9 4 0 0 4 4 4 0 4Fe-4S dicluster domain Rubrerythrin PF02915.12 gi|294495276|ref|YP_003541769.1| - 6.1e-09 36.3 1.4 7.4e-09 36.0 0.9 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|294495276|ref|YP_003541769.1| - 0.00026 21.2 0.3 0.00035 20.7 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin_2 PF13668.1 gi|294495276|ref|YP_003541769.1| - 0.00054 19.9 0.1 0.00072 19.5 0.0 1.2 1 0 0 1 1 1 1 Ferritin-like domain COQ7 PF03232.8 gi|294495276|ref|YP_003541769.1| - 0.0013 18.2 0.1 0.0016 17.9 0.1 1.1 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 DUF4142 PF13628.1 gi|294495276|ref|YP_003541769.1| - 0.064 13.2 0.6 0.099 12.6 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4142) Ferritin PF00210.19 gi|294495276|ref|YP_003541769.1| - 0.065 12.9 0.6 0.15 11.8 0.3 1.4 1 1 0 1 1 1 0 Ferritin-like domain Orthopox_A47 PF06334.6 gi|294495276|ref|YP_003541769.1| - 0.12 11.4 0.3 0.12 11.4 0.2 1.1 1 0 0 1 1 1 0 Orthopoxvirus A47 protein SecE PF00584.15 gi|294495277|ref|YP_003541770.1| - 0.39 10.3 3.4 0.74 9.4 2.4 1.4 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex UPF0047 PF01894.12 gi|294495278|ref|YP_003541771.1| - 4.1e-43 145.9 0.1 4.7e-43 145.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Ribosomal_S3Ae PF01015.13 gi|294495279|ref|YP_003541772.1| - 0.018 14.3 0.1 0.021 14.1 0.1 1.2 1 0 0 1 1 1 0 Ribosomal S3Ae family IcmF-related PF06761.7 gi|294495279|ref|YP_003541772.1| - 0.12 11.6 0.0 0.14 11.4 0.0 1.1 1 0 0 1 1 1 0 Intracellular multiplication and human macrophage-killing Nnf1 PF03980.9 gi|294495279|ref|YP_003541772.1| - 0.17 11.8 1.1 0.31 11.0 0.7 1.5 1 1 0 1 1 1 0 Nnf1 PP2C_C PF07830.8 gi|294495279|ref|YP_003541772.1| - 0.21 11.7 1.2 1.9 8.6 0.4 2.1 1 1 1 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain DUF2758 PF10957.3 gi|294495279|ref|YP_003541772.1| - 0.53 10.1 2.4 1.1 9.1 1.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2758) OTCace PF00185.19 gi|294495280|ref|YP_003541773.1| - 8.8e-54 181.6 0.0 1.6e-53 180.7 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|294495280|ref|YP_003541773.1| - 8.4e-53 177.8 0.5 1.4e-52 177.1 0.4 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GARS_A PF01071.14 gi|294495281|ref|YP_003541774.1| - 7.5e-55 185.5 0.1 4.4e-54 182.9 0.0 2.1 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|294495281|ref|YP_003541774.1| - 5.8e-32 110.1 0.1 1.1e-31 109.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|294495281|ref|YP_003541774.1| - 4.3e-19 68.4 0.1 1.3e-18 66.9 0.0 1.8 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|294495281|ref|YP_003541774.1| - 5.3e-14 52.3 0.0 1.5e-13 50.8 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|294495281|ref|YP_003541774.1| - 0.00029 20.7 0.0 0.00055 19.8 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|294495281|ref|YP_003541774.1| - 0.0074 15.5 0.0 0.023 13.9 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GFO_IDH_MocA PF01408.17 gi|294495281|ref|YP_003541774.1| - 0.013 16.0 0.2 0.066 13.7 0.0 2.2 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold GSH-S_ATP PF02955.11 gi|294495281|ref|YP_003541774.1| - 0.072 12.2 0.0 0.15 11.2 0.0 1.5 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain Pribosyltran PF00156.22 gi|294495282|ref|YP_003541775.1| - 2.4e-15 56.3 2.9 1.2e-14 54.0 2.0 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|294495282|ref|YP_003541775.1| - 0.0045 16.2 0.0 0.0071 15.5 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF46 PF01864.12 gi|294495283|ref|YP_003541776.1| - 1.4e-46 158.5 3.9 1.6e-46 158.4 2.7 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|294495283|ref|YP_003541776.1| - 5.3e-06 26.2 3.7 5.3e-06 26.2 2.6 2.0 1 1 1 2 2 2 1 Cytidylyltransferase family ResB PF05140.9 gi|294495284|ref|YP_003541777.1| - 0.00099 17.7 2.2 0.0012 17.4 0.1 2.0 2 0 0 2 2 2 1 ResB-like family DUF3488 PF11992.3 gi|294495284|ref|YP_003541777.1| - 3.4 6.1 6.0 5 5.6 4.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) Cytochrom_C_asm PF01578.15 gi|294495285|ref|YP_003541778.1| - 1.9e-34 119.0 24.4 1.9e-34 119.0 16.9 2.1 2 0 0 2 2 2 1 Cytochrome C assembly protein HATPase_c PF02518.21 gi|294495286|ref|YP_003541779.1| - 6.1e-31 106.4 0.3 1.2e-30 105.5 0.2 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|294495286|ref|YP_003541779.1| - 1.6e-14 53.8 0.0 4e-14 52.5 0.0 1.7 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|294495286|ref|YP_003541779.1| - 6.4e-12 45.2 0.0 1.9e-11 43.7 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|294495286|ref|YP_003541779.1| - 2.4e-09 37.4 0.0 7.7e-09 35.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain Response_reg PF00072.19 gi|294495286|ref|YP_003541779.1| - 4.2e-08 33.1 0.1 1.4e-07 31.5 0.1 1.9 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.19 gi|294495286|ref|YP_003541779.1| - 1.2e-05 25.0 0.0 5e-05 23.0 0.0 2.0 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|294495286|ref|YP_003541779.1| - 3.9e-05 23.3 1.5 4.1e-05 23.2 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|294495286|ref|YP_003541779.1| - 0.0045 16.6 1.7 0.0058 16.3 0.1 2.1 2 0 0 2 2 2 1 GHKL domain PAS_7 PF12860.2 gi|294495286|ref|YP_003541779.1| - 0.0048 16.9 0.1 0.29 11.1 0.0 2.8 3 0 0 3 3 3 1 PAS fold PAS_3 PF08447.6 gi|294495286|ref|YP_003541779.1| - 0.017 15.2 0.0 0.049 13.7 0.0 1.8 1 0 0 1 1 1 0 PAS fold PAS_8 PF13188.1 gi|294495286|ref|YP_003541779.1| - 0.053 13.4 0.0 0.18 11.7 0.0 1.9 1 0 0 1 1 1 0 PAS domain IncA PF04156.9 gi|294495286|ref|YP_003541779.1| - 0.061 12.9 1.6 0.14 11.7 0.8 1.7 1 1 0 1 1 1 0 IncA protein AA_kinase PF00696.23 gi|294495287|ref|YP_003541780.1| - 2.1e-40 138.8 0.3 3.5e-40 138.0 0.2 1.4 1 0 0 1 1 1 1 Amino acid kinase family PUA PF01472.15 gi|294495287|ref|YP_003541780.1| - 7.5e-20 70.4 0.1 1.7e-19 69.2 0.1 1.7 1 0 0 1 1 1 1 PUA domain Aldedh PF00171.17 gi|294495288|ref|YP_003541781.1| - 3.1e-13 48.8 0.1 1.4e-10 40.1 0.0 2.2 2 0 0 2 2 2 2 Aldehyde dehydrogenase family MCR_alpha_N PF02745.10 gi|294495289|ref|YP_003541782.1| - 1.4e-135 450.6 0.3 1.9e-135 450.2 0.2 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|294495289|ref|YP_003541782.1| - 1.1e-63 212.8 2.6 1.1e-63 212.8 1.8 1.8 2 0 0 2 2 2 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MCR_gamma PF02240.11 gi|294495290|ref|YP_003541783.1| - 3e-122 406.4 0.4 3.4e-122 406.3 0.3 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_C PF04609.7 gi|294495291|ref|YP_003541784.1| - 6.2e-39 133.4 6.3 8.8e-34 116.5 2.7 3.0 1 1 1 2 2 2 2 Methyl-coenzyme M reductase operon protein C MCR_D PF02505.9 gi|294495292|ref|YP_003541785.1| - 1.9e-46 157.3 0.0 2.2e-46 157.1 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.13 gi|294495293|ref|YP_003541786.1| - 7.7e-133 441.4 5.6 1.2e-132 440.8 3.9 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|294495293|ref|YP_003541786.1| - 1.4e-80 269.0 2.5 2.5e-80 268.2 1.7 1.4 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain DUF1338 PF07063.8 gi|294495293|ref|YP_003541786.1| - 0.14 11.2 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1338) DUF512 PF04459.7 gi|294495294|ref|YP_003541787.1| - 1.1e-20 73.5 0.0 1.9e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF512) Radical_SAM PF04055.16 gi|294495294|ref|YP_003541787.1| - 3.7e-12 46.7 5.1 1.5e-10 41.4 2.7 3.1 2 1 0 2 2 2 1 Radical SAM superfamily YedD PF13987.1 gi|294495294|ref|YP_003541787.1| - 0.016 14.8 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 YedD-like protein PolC_DP2 PF03833.8 gi|294495295|ref|YP_003541788.1| - 0 1221.0 0.1 0 1221.0 0.1 1.5 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 TerY-C PF15616.1 gi|294495295|ref|YP_003541788.1| - 0.011 15.6 8.0 0.011 15.6 5.5 2.9 2 1 1 3 3 3 0 TerY-C metal binding domain zf-ribbon_3 PF13248.1 gi|294495295|ref|YP_003541788.1| - 8.9 5.6 23.3 1.4 8.1 4.4 4.4 3 1 2 5 5 5 0 zinc-ribbon domain AAA PF00004.24 gi|294495296|ref|YP_003541789.1| - 6.8e-45 152.5 0.0 1.6e-44 151.3 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|294495296|ref|YP_003541789.1| - 5.8e-07 28.7 0.0 1.1e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|294495296|ref|YP_003541789.1| - 1.2e-06 29.3 0.0 4.1e-06 27.6 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|294495296|ref|YP_003541789.1| - 1.6e-06 28.2 0.1 0.0023 18.0 0.0 2.6 1 1 1 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|294495296|ref|YP_003541789.1| - 5.6e-06 26.3 0.0 1.5e-05 24.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_14 PF13173.1 gi|294495296|ref|YP_003541789.1| - 1.2e-05 25.2 0.0 3.8e-05 23.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|294495296|ref|YP_003541789.1| - 2.6e-05 23.9 0.0 0.00011 21.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|294495296|ref|YP_003541789.1| - 3.7e-05 22.6 0.0 0.00011 21.0 0.0 1.8 1 1 1 2 2 2 1 TIP49 C-terminus AAA_16 PF13191.1 gi|294495296|ref|YP_003541789.1| - 4.7e-05 23.4 0.0 0.00023 21.1 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|294495296|ref|YP_003541789.1| - 0.00018 21.2 0.2 0.00069 19.3 0.0 1.9 2 0 0 2 2 2 1 Archaeal ATPase AAA_18 PF13238.1 gi|294495296|ref|YP_003541789.1| - 0.00034 20.9 0.0 0.001 19.3 0.0 1.9 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|294495296|ref|YP_003541789.1| - 0.00037 19.6 0.0 0.00095 18.3 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|294495296|ref|YP_003541789.1| - 0.00061 19.6 0.0 0.0011 18.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|294495296|ref|YP_003541789.1| - 0.0031 16.9 0.3 0.16 11.3 0.1 2.3 1 1 1 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|294495296|ref|YP_003541789.1| - 0.0066 16.1 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain KaiC PF06745.8 gi|294495296|ref|YP_003541789.1| - 0.0089 15.1 0.6 1.9 7.5 0.1 2.5 1 1 1 2 2 2 1 KaiC Mg_chelatase PF01078.16 gi|294495296|ref|YP_003541789.1| - 0.01 14.9 0.0 0.023 13.8 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|294495296|ref|YP_003541789.1| - 0.015 14.8 0.0 0.034 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.6 gi|294495296|ref|YP_003541789.1| - 0.021 14.4 0.0 0.061 12.9 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|294495296|ref|YP_003541789.1| - 0.023 14.8 0.0 0.05 13.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase IstB_IS21 PF01695.12 gi|294495296|ref|YP_003541789.1| - 0.031 13.6 0.0 0.069 12.5 0.0 1.5 1 1 0 1 1 1 0 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|294495296|ref|YP_003541789.1| - 0.038 13.7 0.0 0.62 9.7 0.0 2.3 2 0 0 2 2 2 0 NTPase T2SE PF00437.15 gi|294495296|ref|YP_003541789.1| - 0.083 11.7 0.0 0.61 8.9 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein ABC_tran PF00005.22 gi|294495296|ref|YP_003541789.1| - 0.088 13.1 0.0 0.22 11.8 0.0 1.7 1 0 0 1 1 1 0 ABC transporter ResIII PF04851.10 gi|294495296|ref|YP_003541789.1| - 0.093 12.5 0.1 0.31 10.8 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Sigma54_activat PF00158.21 gi|294495296|ref|YP_003541789.1| - 0.14 11.6 0.0 0.94 8.9 0.0 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain SpoOE-like PF09388.5 gi|294495296|ref|YP_003541789.1| - 0.81 9.2 5.1 2.3 7.7 0.0 3.2 3 0 0 3 3 3 0 Spo0E like sporulation regulatory protein MF_alpha_N PF05436.6 gi|294495297|ref|YP_003541790.1| - 0.015 14.9 0.6 0.023 14.3 0.4 1.3 1 0 0 1 1 1 0 Mating factor alpha precursor N-terminus SPRY PF00622.23 gi|294495297|ref|YP_003541790.1| - 0.12 12.5 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 SPRY domain PYC_OADA PF02436.13 gi|294495298|ref|YP_003541791.1| - 3.4e-64 215.8 0.1 5.7e-64 215.1 0.1 1.3 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|294495298|ref|YP_003541791.1| - 2.9e-42 144.9 0.0 4e-42 144.5 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.17 gi|294495298|ref|YP_003541791.1| - 3.7e-16 58.5 5.6 7.1e-16 57.6 3.2 2.0 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|294495298|ref|YP_003541791.1| - 2.1e-06 27.3 1.7 0.0016 18.0 0.2 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.1 gi|294495298|ref|YP_003541791.1| - 0.0056 16.3 3.4 0.017 14.8 1.4 2.6 2 1 0 2 2 2 1 RnfC Barrel sandwich hybrid domain HlyD_2 PF12700.2 gi|294495298|ref|YP_003541791.1| - 0.067 12.3 1.4 0.73 8.9 0.2 2.3 1 1 1 2 2 2 0 HlyD family secretion protein Peptidase_M23 PF01551.17 gi|294495298|ref|YP_003541791.1| - 0.079 13.0 0.3 0.55 10.3 0.1 2.3 1 1 1 2 2 2 0 Peptidase family M23 HlyD PF00529.15 gi|294495298|ref|YP_003541791.1| - 0.27 10.4 0.8 0.66 9.2 0.1 1.9 2 0 0 2 2 2 0 HlyD family secretion protein CPSase_L_D2 PF02786.12 gi|294495299|ref|YP_003541792.1| - 7.9e-77 257.2 0.0 1.3e-76 256.5 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|294495299|ref|YP_003541792.1| - 5.7e-47 158.3 0.1 1.7e-46 156.8 0.0 1.9 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|294495299|ref|YP_003541792.1| - 2.7e-41 139.8 0.0 6.2e-41 138.7 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATP-grasp_4 PF13535.1 gi|294495299|ref|YP_003541792.1| - 2.4e-16 60.0 0.0 5.7e-16 58.7 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|294495299|ref|YP_003541792.1| - 8e-15 54.3 0.0 1.2e-14 53.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|294495299|ref|YP_003541792.1| - 6.9e-11 41.9 0.0 1.7e-10 40.6 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|294495299|ref|YP_003541792.1| - 1.5e-06 27.8 0.0 0.014 14.8 0.0 2.4 2 0 0 2 2 2 2 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|294495299|ref|YP_003541792.1| - 1.4e-05 25.0 0.0 2.2e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|294495299|ref|YP_003541792.1| - 1.9e-05 24.0 0.0 4.4e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|294495299|ref|YP_003541792.1| - 0.022 14.3 0.0 0.038 13.5 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Archease PF01951.11 gi|294495299|ref|YP_003541792.1| - 0.055 13.4 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Archease protein family (MTH1598/TM1083) BPL_LplA_LipB PF03099.14 gi|294495300|ref|YP_003541793.1| - 3.5e-22 78.7 0.1 1.1e-21 77.1 0.0 1.7 1 1 1 2 2 2 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|294495300|ref|YP_003541793.1| - 4.9e-16 58.1 0.5 9.7e-16 57.1 0.3 1.5 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|294495300|ref|YP_003541793.1| - 4.7e-07 29.3 0.0 1e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.1 gi|294495300|ref|YP_003541793.1| - 7.6e-05 22.0 0.1 0.00019 20.7 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|294495300|ref|YP_003541793.1| - 0.0028 17.7 0.0 0.0068 16.4 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_28 PF13518.1 gi|294495300|ref|YP_003541793.1| - 0.031 14.2 0.1 0.075 13.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|294495300|ref|YP_003541793.1| - 0.082 12.5 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain TrmB PF01978.14 gi|294495300|ref|YP_003541793.1| - 0.1 12.2 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB S-layer PF07752.6 gi|294495301|ref|YP_003541794.1| - 1.7e-10 40.5 0.6 2.3e-10 40.1 0.4 1.1 1 0 0 1 1 1 1 S-layer protein MCPsignal PF00015.16 gi|294495302|ref|YP_003541795.1| - 1e-05 25.1 10.4 0.00019 21.0 0.7 2.5 2 0 0 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Reo_sigmaC PF04582.7 gi|294495302|ref|YP_003541795.1| - 1.5e-05 24.4 5.1 0.0032 16.6 0.2 2.2 2 0 0 2 2 2 2 Reovirus sigma C capsid protein Laminin_II PF06009.7 gi|294495302|ref|YP_003541795.1| - 0.00011 21.9 25.9 0.0032 17.2 2.3 3.7 1 1 3 4 4 4 3 Laminin Domain II DUF3450 PF11932.3 gi|294495302|ref|YP_003541795.1| - 0.00028 20.2 24.4 0.00087 18.6 7.2 3.0 1 1 1 2 2 2 2 Protein of unknown function (DUF3450) ALIX_LYPXL_bnd PF13949.1 gi|294495302|ref|YP_003541795.1| - 0.00049 19.1 30.2 0.016 14.1 13.5 2.8 1 1 2 3 3 3 2 ALIX V-shaped domain binding to HIV Laminin_I PF06008.9 gi|294495302|ref|YP_003541795.1| - 0.00059 19.2 31.6 0.096 11.9 5.3 2.4 1 1 1 2 2 2 2 Laminin Domain I MbeB_N PF04837.7 gi|294495302|ref|YP_003541795.1| - 0.00075 19.5 2.5 0.22 11.6 0.1 3.3 2 0 0 2 2 2 1 MbeB-like, N-term conserved region CENP-F_leu_zip PF10473.4 gi|294495302|ref|YP_003541795.1| - 0.0011 18.8 18.4 0.0011 18.8 12.8 3.2 2 1 1 3 3 3 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF948 PF06103.6 gi|294495302|ref|YP_003541795.1| - 0.0028 17.4 16.8 0.42 10.4 0.4 4.4 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) AAA_13 PF13166.1 gi|294495302|ref|YP_003541795.1| - 0.0056 15.2 11.3 0.0056 15.2 7.8 2.3 1 1 1 2 2 2 1 AAA domain DUF1079 PF06435.6 gi|294495302|ref|YP_003541795.1| - 0.013 15.4 2.4 0.4 10.6 0.3 3.1 2 0 0 2 2 2 0 Repeat of unknown function (DUF1079) DUF1664 PF07889.7 gi|294495302|ref|YP_003541795.1| - 0.014 15.1 25.9 0.03 14.1 2.1 4.1 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) APG6 PF04111.7 gi|294495302|ref|YP_003541795.1| - 0.018 14.1 43.6 0.02 13.9 12.1 2.9 1 1 1 2 2 2 0 Autophagy protein Apg6 DUF972 PF06156.8 gi|294495302|ref|YP_003541795.1| - 0.018 15.3 36.7 0.14 12.5 2.1 4.2 2 2 1 3 3 3 0 Protein of unknown function (DUF972) Myosin_tail_1 PF01576.14 gi|294495302|ref|YP_003541795.1| - 0.022 12.5 44.7 0.0052 14.5 14.9 2.2 1 1 1 2 2 2 0 Myosin tail TBPIP PF07106.8 gi|294495302|ref|YP_003541795.1| - 0.031 13.8 43.9 1 8.8 8.2 4.6 1 1 4 5 5 5 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) PspA_IM30 PF04012.7 gi|294495302|ref|YP_003541795.1| - 0.044 13.1 29.2 0.16 11.2 1.4 4.1 1 1 3 4 4 3 0 PspA/IM30 family ERM PF00769.14 gi|294495302|ref|YP_003541795.1| - 0.053 13.0 38.5 0.11 11.9 11.6 2.5 1 1 1 2 2 2 0 Ezrin/radixin/moesin family Baculo_PEP_C PF04513.7 gi|294495302|ref|YP_003541795.1| - 0.062 13.1 9.0 0.69 9.7 1.1 3.1 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Sec8_exocyst PF04048.9 gi|294495302|ref|YP_003541795.1| - 0.071 12.7 23.9 1.5 8.4 2.7 3.7 1 1 2 3 3 3 0 Sec8 exocyst complex component specific domain Rsa3 PF14615.1 gi|294495302|ref|YP_003541795.1| - 0.15 11.4 2.6 0.65 9.3 0.1 3.2 2 1 1 3 3 3 0 Ribosome-assembly protein 3 Spc7 PF08317.6 gi|294495302|ref|YP_003541795.1| - 0.24 10.0 41.2 0.79 8.3 11.8 2.7 1 1 2 3 3 3 0 Spc7 kinetochore protein IL5 PF02025.10 gi|294495302|ref|YP_003541795.1| - 0.25 11.3 8.0 3.2 7.8 0.2 2.9 2 2 1 3 3 3 0 Interleukin 5 Filament PF00038.16 gi|294495302|ref|YP_003541795.1| - 0.25 10.7 38.1 1.5 8.2 22.7 2.3 1 1 1 2 2 2 0 Intermediate filament protein Fib_alpha PF08702.5 gi|294495302|ref|YP_003541795.1| - 0.38 10.8 32.5 0.026 14.6 6.1 3.3 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family Spc24 PF08286.6 gi|294495302|ref|YP_003541795.1| - 0.43 10.2 36.6 0.56 9.9 0.9 4.3 2 2 2 4 4 4 0 Spc24 subunit of Ndc80 CCDC155 PF14662.1 gi|294495302|ref|YP_003541795.1| - 0.43 10.1 34.8 1.3 8.5 8.0 2.5 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 DUF4201 PF13870.1 gi|294495302|ref|YP_003541795.1| - 0.49 9.8 42.6 0.31 10.4 4.2 3.4 1 1 1 3 3 3 0 Domain of unknown function (DUF4201) GAS PF13851.1 gi|294495302|ref|YP_003541795.1| - 0.58 9.3 47.8 0.49 9.5 14.1 3.3 1 1 3 4 4 4 0 Growth-arrest specific micro-tubule binding Prenyltransf PF01255.14 gi|294495302|ref|YP_003541795.1| - 0.95 8.5 13.2 0.76 8.8 1.6 2.3 2 0 0 2 2 2 0 Putative undecaprenyl diphosphate synthase IncA PF04156.9 gi|294495302|ref|YP_003541795.1| - 1 8.9 35.9 0.15 11.6 6.4 3.4 1 1 1 2 2 1 0 IncA protein DUF836 PF05768.9 gi|294495302|ref|YP_003541795.1| - 1.5 9.1 5.9 0.37 11.0 0.6 2.5 2 1 0 2 2 2 0 Glutaredoxin-like domain (DUF836) Mnd1 PF03962.10 gi|294495302|ref|YP_003541795.1| - 2.2 7.8 38.6 0.96 9.0 9.3 3.8 1 1 3 4 4 4 0 Mnd1 family Transposase_22 PF02994.9 gi|294495302|ref|YP_003541795.1| - 3 6.2 38.4 1.9 6.8 11.3 2.6 1 1 1 2 2 2 0 L1 transposable element V_ATPase_I PF01496.14 gi|294495302|ref|YP_003541795.1| - 3.6 5.3 30.9 10 3.7 21.4 1.7 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Atg14 PF10186.4 gi|294495302|ref|YP_003541795.1| - 3.7 6.4 37.4 1.3 7.9 7.0 2.5 1 1 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 TPR_MLP1_2 PF07926.7 gi|294495302|ref|YP_003541795.1| - 3.7 7.2 41.9 0.33 10.7 8.6 4.1 1 1 2 3 3 2 0 TPR/MLP1/MLP2-like protein Adeno_PIX PF03955.9 gi|294495302|ref|YP_003541795.1| - 5.3 7.6 7.0 7.9 7.0 0.0 3.6 1 1 2 3 3 3 0 Adenovirus hexon-associated protein (IX) ThiS PF02597.15 gi|294495302|ref|YP_003541795.1| - 5.3 7.5 7.8 10 6.6 0.5 3.2 3 0 0 3 3 2 0 ThiS family ADIP PF11559.3 gi|294495302|ref|YP_003541795.1| - 5.7 6.8 38.9 0.094 12.6 12.6 3.1 2 1 0 2 2 2 0 Afadin- and alpha -actinin-Binding Mod_r PF07200.8 gi|294495302|ref|YP_003541795.1| - 5.9 6.7 36.8 0.28 11.0 6.6 3.9 1 1 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein UPF0184 PF03670.8 gi|294495302|ref|YP_003541795.1| - 8.2 6.6 12.3 2 8.6 1.4 4.1 2 2 2 4 4 4 0 Uncharacterised protein family (UPF0184) BLOC1_2 PF10046.4 gi|294495302|ref|YP_003541795.1| - 9 6.5 29.0 0.32 11.1 1.8 5.1 1 1 5 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4200 PF13863.1 gi|294495302|ref|YP_003541795.1| - 9.5 6.1 45.1 0.73 9.7 6.1 3.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) IncA PF04156.9 gi|294495303|ref|YP_003541796.1| - 0.0053 16.3 23.6 0.0089 15.6 2.4 2.1 2 0 0 2 2 2 2 IncA protein Cep57_MT_bd PF06657.8 gi|294495303|ref|YP_003541796.1| - 0.0062 16.4 2.3 0.0062 16.4 1.6 3.6 2 1 1 3 3 3 1 Centrosome microtubule-binding domain of Cep57 TPR_MLP1_2 PF07926.7 gi|294495303|ref|YP_003541796.1| - 0.0077 15.9 7.1 0.0077 15.9 4.9 2.5 2 1 0 2 2 2 1 TPR/MLP1/MLP2-like protein EzrA PF06160.7 gi|294495303|ref|YP_003541796.1| - 0.032 12.4 22.6 0.024 12.8 1.8 2.7 2 1 0 2 2 2 0 Septation ring formation regulator, EzrA DUF3510 PF12022.3 gi|294495303|ref|YP_003541796.1| - 0.045 13.8 1.2 0.045 13.8 0.8 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF3510) LXG PF04740.7 gi|294495303|ref|YP_003541796.1| - 0.094 12.4 18.9 15 5.3 12.8 2.9 1 1 0 1 1 1 0 LXG domain of WXG superfamily Mnd1 PF03962.10 gi|294495303|ref|YP_003541796.1| - 0.13 11.9 29.6 0.029 14.0 7.5 2.5 1 1 1 2 2 2 0 Mnd1 family Cluap1 PF10234.4 gi|294495303|ref|YP_003541796.1| - 0.34 10.0 25.1 0.14 11.3 3.5 2.1 1 1 1 2 2 2 0 Clusterin-associated protein-1 Spc7 PF08317.6 gi|294495303|ref|YP_003541796.1| - 0.37 9.4 31.8 0.75 8.3 11.1 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein Sec8_exocyst PF04048.9 gi|294495303|ref|YP_003541796.1| - 0.44 10.1 18.1 0.095 12.3 1.9 2.4 2 1 0 2 2 2 0 Sec8 exocyst complex component specific domain DUF883 PF05957.8 gi|294495303|ref|YP_003541796.1| - 0.45 10.9 10.5 2.9 8.3 1.5 2.6 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) FlaC_arch PF05377.6 gi|294495303|ref|YP_003541796.1| - 0.96 9.3 21.4 0.16 11.8 2.6 3.6 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) Cauli_AT PF03233.8 gi|294495303|ref|YP_003541796.1| - 1.8 8.2 24.4 0.13 12.0 1.2 3.1 1 1 1 3 3 3 0 Aphid transmission protein DivIVA PF05103.8 gi|294495303|ref|YP_003541796.1| - 2 8.4 29.0 2.6 8.0 0.3 3.3 1 1 2 3 3 3 0 DivIVA protein Med9 PF07544.8 gi|294495303|ref|YP_003541796.1| - 2.8 7.7 23.7 2.3 8.0 7.6 3.6 3 1 0 3 3 2 0 RNA polymerase II transcription mediator complex subunit 9 CENP-H PF05837.7 gi|294495303|ref|YP_003541796.1| - 2.9 8.0 26.2 1.3 9.2 6.9 2.9 1 1 1 2 2 2 0 Centromere protein H (CENP-H) ADIP PF11559.3 gi|294495303|ref|YP_003541796.1| - 3.4 7.5 30.4 0.033 14.0 4.4 2.9 2 1 1 3 3 3 0 Afadin- and alpha -actinin-Binding GIDA PF01134.17 gi|294495303|ref|YP_003541796.1| - 4.6 6.0 11.2 1.6 7.4 1.6 2.0 1 1 1 2 2 2 0 Glucose inhibited division protein A DUF424 PF04242.8 gi|294495304|ref|YP_003541797.1| - 1.3e-27 95.6 0.0 1.5e-27 95.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) MCM PF00493.18 gi|294495305|ref|YP_003541798.1| - 6.2e-131 436.1 0.1 1e-130 435.4 0.0 1.3 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|294495305|ref|YP_003541798.1| - 1.2e-18 67.7 1.3 3.5e-18 66.2 0.2 2.4 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|294495305|ref|YP_003541798.1| - 2.2e-07 30.2 0.1 5.5e-05 22.4 0.0 2.3 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|294495305|ref|YP_003541798.1| - 1.5e-06 27.9 0.0 3.8e-06 26.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|294495305|ref|YP_003541798.1| - 0.005 16.4 0.0 0.024 14.2 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Ima1_N PF09779.4 gi|294495305|ref|YP_003541798.1| - 0.046 14.2 0.3 2 8.9 0.0 2.9 3 0 0 3 3 3 0 Ima1 N-terminal domain SSB PF00436.20 gi|294495305|ref|YP_003541798.1| - 0.14 12.0 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 Single-strand binding protein family SpoU_methylase PF00588.14 gi|294495306|ref|YP_003541799.1| - 1.6e-33 115.5 0.0 2.4e-33 115.0 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|294495306|ref|YP_003541799.1| - 0.00023 20.7 0.0 0.00046 19.7 0.0 1.6 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase OTCace PF00185.19 gi|294495306|ref|YP_003541799.1| - 0.025 14.4 0.0 0.041 13.7 0.0 1.4 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Fe_hyd_lg_C PF02906.9 gi|294495306|ref|YP_003541799.1| - 0.091 12.0 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Iron only hydrogenase large subunit, C-terminal domain Malic_M PF03949.10 gi|294495306|ref|YP_003541799.1| - 0.12 11.8 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain DUF2122 PF09895.4 gi|294495306|ref|YP_003541799.1| - 0.14 12.3 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 RecB-family nuclease (DUF2122) Rubrerythrin PF02915.12 gi|294495307|ref|YP_003541800.1| - 3.1e-13 50.2 1.4 2.8e-12 47.1 1.0 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|294495307|ref|YP_003541800.1| - 0.0012 18.5 1.5 0.018 14.7 1.1 2.0 1 1 0 1 1 1 1 Ferritin-like domain FA_desaturase_2 PF03405.9 gi|294495307|ref|YP_003541800.1| - 0.067 11.9 0.1 3.4 6.3 0.0 2.0 1 1 1 2 2 2 0 Fatty acid desaturase NIR_SIR PF01077.17 gi|294495308|ref|YP_003541801.1| - 8e-38 129.2 0.1 1.1e-37 128.8 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|294495308|ref|YP_003541801.1| - 6.6e-14 51.2 0.0 1.4e-13 50.2 0.0 1.6 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain GcpE PF04551.9 gi|294495308|ref|YP_003541801.1| - 0.017 13.9 0.2 0.027 13.2 0.1 1.4 1 1 0 1 1 1 0 GcpE protein Nitrate_red_gam PF02665.9 gi|294495309|ref|YP_003541802.1| - 0.093 12.0 21.6 0.019 14.3 4.0 3.0 2 1 2 4 4 4 0 Nitrate reductase gamma subunit CCG PF02754.11 gi|294495310|ref|YP_003541803.1| - 2.1e-32 110.9 6.3 1.1e-17 63.7 0.0 2.9 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|294495310|ref|YP_003541803.1| - 1.3e-09 37.9 4.0 1.3e-09 37.9 2.8 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294495310|ref|YP_003541803.1| - 2.6e-07 30.3 7.6 2.6e-07 30.3 5.2 2.9 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|294495310|ref|YP_003541803.1| - 4.6e-07 30.0 17.1 1.4e-06 28.5 5.0 2.9 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294495310|ref|YP_003541803.1| - 4.9e-07 30.0 7.6 4.9e-07 30.0 5.2 2.5 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294495310|ref|YP_003541803.1| - 4e-05 23.7 14.3 0.003 17.7 0.6 3.7 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294495310|ref|YP_003541803.1| - 4.9e-05 23.6 14.3 0.014 15.7 0.7 4.1 5 0 0 5 5 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294495310|ref|YP_003541803.1| - 0.0015 18.3 9.0 0.071 12.9 0.6 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294495310|ref|YP_003541803.1| - 0.0031 18.2 9.5 0.0031 18.2 6.6 2.6 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|294495310|ref|YP_003541803.1| - 0.0048 17.3 3.8 0.0048 17.3 2.6 3.6 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|294495310|ref|YP_003541803.1| - 0.025 14.5 2.5 0.025 14.5 1.8 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294495310|ref|YP_003541803.1| - 0.034 14.0 2.7 0.034 14.0 1.9 3.3 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|294495310|ref|YP_003541803.1| - 0.081 13.5 6.4 0.85 10.2 0.0 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4 PF00037.22 gi|294495310|ref|YP_003541803.1| - 2.1 8.1 20.9 0.066 12.8 2.4 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain DUF116 PF01976.12 gi|294495311|ref|YP_003541804.1| - 6.3e-46 155.7 1.7 7.8e-46 155.4 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 Tme5_EGF_like PF09064.5 gi|294495311|ref|YP_003541804.1| - 0.16 11.6 4.7 0.38 10.4 3.3 1.7 1 0 0 1 1 1 0 Thrombomodulin like fifth domain, EGF-like DUF116 PF01976.12 gi|294495312|ref|YP_003541805.1| - 4.4e-41 140.0 0.0 5.6e-41 139.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 SelR PF01641.13 gi|294495313|ref|YP_003541806.1| - 3.3e-50 168.9 0.0 3.8e-50 168.7 0.0 1.0 1 0 0 1 1 1 1 SelR domain DUF2296 PF10058.4 gi|294495313|ref|YP_003541806.1| - 0.017 14.8 1.0 0.54 10.0 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) HNH_5 PF14279.1 gi|294495313|ref|YP_003541806.1| - 0.048 13.6 0.6 0.068 13.1 0.0 1.6 2 0 0 2 2 2 0 HNH endonuclease DUF3650 PF12368.3 gi|294495313|ref|YP_003541806.1| - 0.098 12.1 0.4 0.18 11.3 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3650) TF_Zn_Ribbon PF08271.7 gi|294495313|ref|YP_003541806.1| - 0.25 10.6 6.1 5 6.5 0.2 2.9 2 1 0 2 2 2 0 TFIIB zinc-binding Ribosomal_L37e PF01907.14 gi|294495313|ref|YP_003541806.1| - 0.54 10.1 2.5 11 5.9 0.1 2.3 2 0 0 2 2 2 0 Ribosomal protein L37e zf-ribbon_3 PF13248.1 gi|294495313|ref|YP_003541806.1| - 1.5 8.1 4.4 13 5.1 1.0 2.6 2 1 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|294495313|ref|YP_003541806.1| - 5.6 6.5 9.1 8 6.0 0.3 2.8 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Usp PF00582.21 gi|294495314|ref|YP_003541807.1| - 4.1e-35 121.0 0.8 4.6e-35 120.8 0.5 1.0 1 0 0 1 1 1 1 Universal stress protein family ABC_tran PF00005.22 gi|294495315|ref|YP_003541808.1| - 1.2e-32 113.0 0.0 1.6e-32 112.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|294495315|ref|YP_003541808.1| - 4.2e-13 49.9 0.4 4.3e-10 40.0 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|294495315|ref|YP_003541808.1| - 4.1e-06 26.2 0.1 7.5e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|294495315|ref|YP_003541808.1| - 9.6e-06 26.0 0.0 1.3e-05 25.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|294495315|ref|YP_003541808.1| - 0.0002 20.6 0.3 0.016 14.4 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|294495315|ref|YP_003541808.1| - 0.00061 19.9 0.0 0.0013 18.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|294495315|ref|YP_003541808.1| - 0.00091 19.2 0.0 0.0011 19.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|294495315|ref|YP_003541808.1| - 0.002 17.8 0.0 0.0035 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|294495315|ref|YP_003541808.1| - 0.0021 18.9 0.1 0.0031 18.3 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|294495315|ref|YP_003541808.1| - 0.0054 16.6 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|294495315|ref|YP_003541808.1| - 0.0055 16.3 0.1 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 NACHT domain Arch_ATPase PF01637.13 gi|294495315|ref|YP_003541808.1| - 0.0071 16.0 0.0 0.009 15.7 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_10 PF12846.2 gi|294495315|ref|YP_003541808.1| - 0.014 14.8 0.0 0.018 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain MutS_V PF00488.16 gi|294495315|ref|YP_003541808.1| - 0.015 14.7 0.0 0.035 13.5 0.0 1.5 2 0 0 2 2 2 0 MutS domain V DUF258 PF03193.11 gi|294495315|ref|YP_003541808.1| - 0.017 14.3 0.0 0.025 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 KaiC PF06745.8 gi|294495315|ref|YP_003541808.1| - 0.019 14.1 0.0 0.028 13.5 0.0 1.3 1 0 0 1 1 1 0 KaiC AAA_30 PF13604.1 gi|294495315|ref|YP_003541808.1| - 0.021 14.4 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|294495315|ref|YP_003541808.1| - 0.023 14.1 0.0 0.037 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|294495315|ref|YP_003541808.1| - 0.027 14.4 0.0 0.049 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|294495315|ref|YP_003541808.1| - 0.034 13.8 0.0 0.056 13.1 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|294495315|ref|YP_003541808.1| - 0.057 13.2 0.0 0.086 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|294495315|ref|YP_003541808.1| - 0.058 11.8 0.0 0.073 11.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|294495315|ref|YP_003541808.1| - 0.063 12.4 0.0 0.11 11.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|294495315|ref|YP_003541808.1| - 0.09 12.3 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|294495315|ref|YP_003541808.1| - 0.095 11.7 0.0 0.19 10.7 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.1 gi|294495315|ref|YP_003541808.1| - 0.1 12.9 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|294495315|ref|YP_003541808.1| - 0.11 13.0 0.0 0.19 12.2 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein NTPase_1 PF03266.10 gi|294495315|ref|YP_003541808.1| - 0.11 12.2 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 NTPase PRK PF00485.13 gi|294495315|ref|YP_003541808.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family CcmB PF03379.8 gi|294495316|ref|YP_003541809.1| - 1.5e-31 109.3 21.1 1.8e-31 109.0 14.6 1.0 1 0 0 1 1 1 1 CcmB protein ABC2_membrane_3 PF12698.2 gi|294495316|ref|YP_003541809.1| - 9.9e-11 41.2 20.1 9.9e-11 41.2 13.9 2.2 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|294495316|ref|YP_003541809.1| - 6.6e-09 35.2 20.5 6.6e-09 35.2 14.2 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|294495316|ref|YP_003541809.1| - 0.00026 20.3 26.1 0.00036 19.9 18.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|294495316|ref|YP_003541809.1| - 0.0054 15.9 33.5 0.012 14.8 23.3 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|294495316|ref|YP_003541809.1| - 0.0067 15.3 28.8 0.2 10.4 19.9 2.5 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF3810 PF12725.2 gi|294495316|ref|YP_003541809.1| - 0.36 9.6 1.7 0.87 8.4 1.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Cytochrom_C_asm PF01578.15 gi|294495317|ref|YP_003541810.1| - 5.1e-26 91.5 17.7 5.1e-26 91.5 12.3 1.9 2 0 0 2 2 2 1 Cytochrome C assembly protein Bac_Ubq_Cox PF01654.12 gi|294495317|ref|YP_003541810.1| - 0.0055 15.1 2.7 0.0055 15.1 1.9 1.9 1 1 1 2 2 2 1 Bacterial Cytochrome Ubiquinol Oxidase BCHF PF07284.6 gi|294495317|ref|YP_003541810.1| - 0.51 10.1 12.0 0.026 14.3 4.5 1.7 2 0 0 2 2 2 0 2-vinyl bacteriochlorophyllide hydratase (BCHF) Oxidored_FMN PF00724.15 gi|294495318|ref|YP_003541811.1| - 8.3e-78 261.7 0.0 9.9e-78 261.5 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.16 gi|294495318|ref|YP_003541811.1| - 3.2e-05 23.3 0.0 7.6e-05 22.0 0.0 1.6 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|294495318|ref|YP_003541811.1| - 0.0001 21.2 0.2 0.0003 19.7 0.0 1.8 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|294495318|ref|YP_003541811.1| - 0.067 12.3 0.1 0.12 11.4 0.0 1.5 2 0 0 2 2 2 0 Nitronate monooxygenase HMGL-like PF00682.14 gi|294495318|ref|YP_003541811.1| - 0.12 11.9 0.1 0.27 10.8 0.0 1.6 2 0 0 2 2 2 0 HMGL-like S4 PF01479.20 gi|294495319|ref|YP_003541812.1| - 8.9e-13 47.4 0.0 1.5e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 S4 domain FtsJ PF01728.14 gi|294495319|ref|YP_003541812.1| - 8.2e-10 38.9 0.0 1.5e-09 38.1 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_18 PF12847.2 gi|294495319|ref|YP_003541812.1| - 1e-06 29.2 0.0 1.8e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|294495319|ref|YP_003541812.1| - 2.1e-06 27.4 0.0 3.5e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|294495319|ref|YP_003541812.1| - 5e-06 26.5 0.0 8.7e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|294495319|ref|YP_003541812.1| - 8.1e-05 22.3 0.0 0.00011 21.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|294495319|ref|YP_003541812.1| - 0.00038 21.2 0.0 0.00065 20.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain S4_2 PF13275.1 gi|294495319|ref|YP_003541812.1| - 0.00045 19.7 0.0 0.00094 18.7 0.0 1.6 1 0 0 1 1 1 1 S4 domain Fibrillarin PF01269.12 gi|294495319|ref|YP_003541812.1| - 0.0027 16.6 0.0 0.0035 16.2 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin CMAS PF02353.15 gi|294495319|ref|YP_003541812.1| - 0.072 12.1 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF2119 PF09892.4 gi|294495320|ref|YP_003541813.1| - 8.2e-62 207.9 0.0 9.5e-62 207.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2119) Mic1 PF07035.7 gi|294495320|ref|YP_003541813.1| - 0.12 11.7 0.0 0.16 11.2 0.0 1.1 1 0 0 1 1 1 0 Colon cancer-associated protein Mic1-like Cpn60_TCP1 PF00118.19 gi|294495321|ref|YP_003541814.1| - 1.2e-154 515.6 15.4 1.3e-154 515.4 10.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Nitro_FeMo-Co PF02579.12 gi|294495321|ref|YP_003541814.1| - 0.015 15.3 0.2 0.23 11.5 0.0 2.8 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor TP_methylase PF00590.15 gi|294495322|ref|YP_003541815.1| - 1.2e-15 57.7 0.0 1.5e-15 57.5 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF87 PF01935.12 gi|294495323|ref|YP_003541816.1| - 6.3e-39 134.1 0.0 1.2e-38 133.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|294495323|ref|YP_003541816.1| - 3.6e-26 92.3 0.0 5e-26 91.8 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain HAS-barrel PF09378.5 gi|294495323|ref|YP_003541816.1| - 1.5e-05 24.8 0.1 3.4e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 HAS barrel domain FtsK_SpoIIIE PF01580.13 gi|294495323|ref|YP_003541816.1| - 3.2e-05 23.4 0.1 0.017 14.6 0.0 2.2 2 0 0 2 2 2 2 FtsK/SpoIIIE family DUF853 PF05872.7 gi|294495323|ref|YP_003541816.1| - 0.00053 18.4 0.0 0.63 8.3 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|294495323|ref|YP_003541816.1| - 0.0025 17.2 0.0 0.016 14.6 0.0 2.0 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_22 PF13401.1 gi|294495323|ref|YP_003541816.1| - 0.0042 17.2 0.3 0.75 9.9 0.0 2.7 2 1 1 3 3 3 1 AAA domain TrwB_AAD_bind PF10412.4 gi|294495323|ref|YP_003541816.1| - 0.006 15.2 0.0 0.17 10.4 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|294495323|ref|YP_003541816.1| - 0.16 10.8 0.0 0.32 9.8 0.0 1.5 1 1 0 1 1 1 0 Type II/IV secretion system protein DUF357 PF04010.8 gi|294495324|ref|YP_003541817.1| - 1.5e-28 98.3 0.1 1.7e-28 98.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) TPR_1 PF00515.23 gi|294495324|ref|YP_003541817.1| - 0.065 12.8 0.6 0.97 9.1 0.0 2.5 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_12 PF13424.1 gi|294495324|ref|YP_003541817.1| - 0.14 12.1 0.1 0.21 11.5 0.1 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat DUF555 PF04475.7 gi|294495325|ref|YP_003541818.1| - 7.4e-50 167.1 0.0 8.6e-50 166.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) Dodecin PF07311.7 gi|294495325|ref|YP_003541818.1| - 0.048 13.7 0.1 0.18 11.8 0.0 1.9 3 0 0 3 3 3 0 Dodecin zinc_ribbon_2 PF13240.1 gi|294495325|ref|YP_003541818.1| - 0.11 11.9 0.2 0.16 11.5 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbon domain PfkB PF00294.19 gi|294495326|ref|YP_003541819.1| - 1e-43 149.6 0.0 1.4e-43 149.2 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PEP-utilizers_C PF02896.13 gi|294495327|ref|YP_003541820.1| - 7.1e-101 336.9 0.0 1.2e-100 336.1 0.0 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.14 gi|294495327|ref|YP_003541820.1| - 7.4e-63 212.5 0.0 1.7e-62 211.3 0.0 1.5 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|294495327|ref|YP_003541820.1| - 9.9e-24 82.7 1.0 2.7e-23 81.3 0.7 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Gar1 PF04410.9 gi|294495328|ref|YP_003541821.1| - 1.7e-07 30.8 0.1 1.7e-07 30.8 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.14 gi|294495329|ref|YP_003541822.1| - 6.9e-47 157.1 1.6 2.6e-24 84.7 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|294495329|ref|YP_003541822.1| - 9.5e-18 63.2 1.9 1.7e-17 62.4 0.9 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|294495329|ref|YP_003541822.1| - 2.2e-05 23.6 0.5 0.017 14.4 0.1 3.3 2 0 0 2 2 2 2 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.6 gi|294495329|ref|YP_003541822.1| - 2.2e-05 23.9 0.7 5.6e-05 22.7 0.5 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|294495329|ref|YP_003541822.1| - 0.0058 15.8 0.3 0.0058 15.8 0.2 1.9 2 0 0 2 2 1 1 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|294495329|ref|YP_003541822.1| - 0.012 15.8 0.9 0.098 12.9 0.3 2.4 2 0 0 2 2 2 0 Restriction alleviation protein Lar Elf1 PF05129.8 gi|294495329|ref|YP_003541822.1| - 0.017 14.7 1.5 0.033 13.8 0.3 2.0 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like HTH_AsnC-type PF13404.1 gi|294495329|ref|YP_003541822.1| - 0.024 14.1 0.7 0.084 12.4 0.1 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain A2L_zn_ribbon PF08792.5 gi|294495329|ref|YP_003541822.1| - 0.031 13.7 0.4 0.072 12.5 0.3 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain RPA_interact_C PF14768.1 gi|294495329|ref|YP_003541822.1| - 0.044 14.1 0.2 3.7 8.0 0.0 2.4 2 0 0 2 2 2 0 Replication protein A interacting C-terminal DZR PF12773.2 gi|294495329|ref|YP_003541822.1| - 0.058 13.2 2.0 0.15 11.8 0.3 2.2 2 0 0 2 2 2 0 Double zinc ribbon Cyclin_C PF02984.14 gi|294495329|ref|YP_003541822.1| - 0.16 11.8 0.0 7.7 6.4 0.0 2.4 2 0 0 2 2 2 0 Cyclin, C-terminal domain Trm112p PF03966.11 gi|294495329|ref|YP_003541822.1| - 0.43 10.9 2.2 15 6.0 1.5 2.6 1 1 0 1 1 1 0 Trm112p-like protein HTH_31 PF13560.1 gi|294495329|ref|YP_003541822.1| - 0.57 10.4 4.3 3.3 7.9 0.0 3.3 2 1 0 2 2 2 0 Helix-turn-helix domain zf-Mss51 PF13824.1 gi|294495329|ref|YP_003541822.1| - 1.1 9.1 3.7 5.1 7.0 1.0 2.9 3 1 1 4 4 4 0 Zinc-finger of mitochondrial splicing suppressor 51 DNA_RNApol_7kD PF03604.8 gi|294495329|ref|YP_003541822.1| - 1.4 8.4 4.1 3.3 7.2 0.0 2.9 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|294495329|ref|YP_003541822.1| - 1.9 8.2 4.9 2.1 8.0 0.2 2.9 2 2 2 4 4 4 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|294495329|ref|YP_003541822.1| - 7.8 6.5 7.3 1.2 9.1 0.3 2.9 2 1 1 3 3 3 0 Zinc ribbon domain LysE PF01810.13 gi|294495330|ref|YP_003541823.1| - 1.5e-24 86.3 16.3 2e-24 85.9 11.3 1.1 1 0 0 1 1 1 1 LysE type translocator BCLP PF12304.3 gi|294495330|ref|YP_003541823.1| - 0.41 10.0 6.1 0.056 12.8 0.9 2.0 2 0 0 2 2 2 0 Beta-casein like protein Met_10 PF02475.11 gi|294495331|ref|YP_003541824.1| - 1.6e-63 213.8 0.0 2.1e-63 213.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.1 gi|294495331|ref|YP_003541824.1| - 6.3e-09 35.5 0.0 1e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|294495331|ref|YP_003541824.1| - 4.2e-08 33.2 0.1 1.8e-07 31.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|294495331|ref|YP_003541824.1| - 7.1e-08 32.0 0.0 1.2e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|294495331|ref|YP_003541824.1| - 5.2e-07 30.2 0.0 1.1e-06 29.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|294495331|ref|YP_003541824.1| - 1.2e-06 28.0 0.0 2.2e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.8 gi|294495331|ref|YP_003541824.1| - 1.7e-06 27.3 0.0 2.7e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|294495331|ref|YP_003541824.1| - 3.7e-06 26.5 0.0 6.3e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.1 gi|294495331|ref|YP_003541824.1| - 1.6e-05 25.2 0.0 3.2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|294495331|ref|YP_003541824.1| - 0.00075 18.6 0.0 0.0011 18.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|294495331|ref|YP_003541824.1| - 0.0013 19.1 0.0 0.0033 17.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|294495331|ref|YP_003541824.1| - 0.0015 17.3 0.0 0.0022 16.7 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase TRM PF02005.11 gi|294495331|ref|YP_003541824.1| - 0.0026 16.7 0.0 0.0039 16.1 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase UPF0020 PF01170.13 gi|294495331|ref|YP_003541824.1| - 0.0099 15.4 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PRMT5 PF05185.11 gi|294495331|ref|YP_003541824.1| - 0.057 12.3 0.0 0.08 11.8 0.0 1.1 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase PsbU PF06514.6 gi|294495331|ref|YP_003541824.1| - 0.077 12.8 0.1 0.26 11.1 0.0 1.8 2 0 0 2 2 2 0 Photosystem II 12 kDa extrinsic protein (PsbU) ADH_zinc_N PF00107.21 gi|294495331|ref|YP_003541824.1| - 0.078 12.5 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_23 PF13489.1 gi|294495331|ref|YP_003541824.1| - 0.12 12.0 0.0 0.38 10.4 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain DNA_methylase PF00145.12 gi|294495331|ref|YP_003541824.1| - 0.18 10.9 0.0 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Zip PF02535.17 gi|294495333|ref|YP_003541826.1| - 3.2e-24 85.5 16.5 5.1e-20 71.7 5.9 2.2 1 1 1 2 2 2 2 ZIP Zinc transporter DUF3206 PF11472.3 gi|294495333|ref|YP_003541826.1| - 0.023 14.4 0.0 0.042 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3206) URO-D PF01208.12 gi|294495334|ref|YP_003541827.1| - 3.4e-62 210.3 0.0 3.8e-62 210.1 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) EamA PF00892.15 gi|294495335|ref|YP_003541828.1| - 1.3e-15 57.4 31.8 2.4e-11 43.7 7.8 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|294495335|ref|YP_003541828.1| - 8.2e-06 26.0 3.9 8.2e-06 26.0 2.7 4.1 2 2 2 4 4 4 1 Multidrug resistance efflux transporter TPT PF03151.11 gi|294495335|ref|YP_003541828.1| - 0.011 15.3 10.6 0.34 10.5 0.1 3.1 3 1 0 3 3 3 0 Triose-phosphate Transporter family Nuc_sug_transp PF04142.10 gi|294495335|ref|YP_003541828.1| - 0.52 9.3 5.6 0.065 12.3 0.4 2.0 2 1 0 2 2 2 0 Nucleotide-sugar transporter bPH_1 PF08000.6 gi|294495336|ref|YP_003541829.1| - 9.3e-48 160.9 0.0 1e-47 160.8 0.0 1.0 1 0 0 1 1 1 1 Bacterial PH domain bPH_3 PF14470.1 gi|294495336|ref|YP_003541829.1| - 2.3e-06 27.7 0.3 3.8e-06 27.0 0.2 1.5 1 1 0 1 1 1 1 Bacterial PH domain PI31_Prot_N PF11566.3 gi|294495336|ref|YP_003541829.1| - 0.13 11.8 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 PI31 proteasome regulator N-terminal UPF0150 PF03681.10 gi|294495337|ref|YP_003541830.1| - 2.8e-12 46.0 1.4 3.6e-12 45.7 1.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF3387 PF11867.3 gi|294495338|ref|YP_003541831.1| - 2.5e-18 66.1 0.6 2.8e-18 65.9 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) DUF2920 PF11144.3 gi|294495338|ref|YP_003541831.1| - 0.0082 15.2 0.0 0.0091 15.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2920) DUF3217 PF11506.3 gi|294495338|ref|YP_003541831.1| - 0.067 12.9 0.0 0.074 12.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3217) SSF PF00474.12 gi|294495339|ref|YP_003541832.1| - 1.8e-72 244.2 26.6 2.3e-72 243.8 18.4 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family DUF523 PF04463.7 gi|294495340|ref|YP_003541833.1| - 1.5e-36 125.2 0.0 2.3e-36 124.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF1722 PF08349.6 gi|294495340|ref|YP_003541833.1| - 4.8e-11 42.5 0.0 7.6e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) Toxin_41 PF15521.1 gi|294495340|ref|YP_003541833.1| - 0.02 14.0 0.0 0.033 13.3 0.0 1.2 1 0 0 1 1 1 0 Putative toxin 41 DPRP PF04244.8 gi|294495341|ref|YP_003541834.1| - 1.5e-46 158.7 0.1 3.1e-46 157.7 0.0 1.6 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.9 gi|294495341|ref|YP_003541834.1| - 1.6e-09 37.4 0.1 2.3e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase YbjQ_1 PF01906.12 gi|294495342|ref|YP_003541835.1| - 9.9e-32 109.4 2.1 1.1e-31 109.3 1.4 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.3 gi|294495342|ref|YP_003541835.1| - 0.0082 16.2 0.4 0.013 15.5 0.2 1.5 1 1 0 1 1 1 1 Selenium binding protein DUF4156 PF13698.1 gi|294495342|ref|YP_003541835.1| - 0.11 12.4 0.2 0.15 11.9 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4156) MS_channel PF00924.13 gi|294495343|ref|YP_003541836.1| - 1.9e-48 164.5 1.5 2.5e-48 164.1 1.0 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|294495343|ref|YP_003541836.1| - 0.016 14.8 2.0 0.016 14.8 1.4 2.4 2 1 1 3 3 3 0 Conserved TM helix FtsX PF02687.16 gi|294495343|ref|YP_003541836.1| - 1.1 9.0 9.7 2.6 7.8 3.1 2.2 2 0 0 2 2 2 0 FtsX-like permease family DUF1284 PF06935.6 gi|294495344|ref|YP_003541837.1| - 8.2e-22 77.3 2.4 5e-21 74.8 1.7 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1284) dTMP_synthase PF02593.9 gi|294495344|ref|YP_003541837.1| - 0.0053 16.1 0.1 0.0061 15.9 0.0 1.2 1 0 0 1 1 1 1 Thymidylate synthase Fasciclin PF02469.17 gi|294495345|ref|YP_003541838.1| - 4e-28 97.9 0.0 4.8e-28 97.7 0.0 1.0 1 0 0 1 1 1 1 Fasciclin domain KH_1 PF00013.24 gi|294495346|ref|YP_003541839.1| - 5.5e-15 54.7 10.1 2.8e-09 36.4 0.7 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|294495346|ref|YP_003541839.1| - 1.2e-06 27.9 10.3 7.9e-05 22.2 0.4 2.7 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|294495346|ref|YP_003541839.1| - 3.3e-05 23.3 6.5 0.056 12.9 0.5 2.8 3 0 0 3 3 3 2 KH domain KH_4 PF13083.1 gi|294495346|ref|YP_003541839.1| - 0.11 12.0 5.3 5 6.8 0.7 2.9 2 1 0 2 2 2 0 KH domain RIO1 PF01163.17 gi|294495347|ref|YP_003541840.1| - 4e-60 202.4 0.1 5.6e-60 201.9 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|294495347|ref|YP_003541840.1| - 4.7e-10 39.0 0.0 7.8e-10 38.3 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|294495347|ref|YP_003541840.1| - 3.6e-05 22.9 0.0 0.00059 18.9 0.0 2.2 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|294495347|ref|YP_003541840.1| - 0.00023 20.9 0.0 0.044 13.5 0.0 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family HTH_5 PF01022.15 gi|294495349|ref|YP_003541842.1| - 5.8e-14 51.4 0.8 8.1e-14 51.0 0.6 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|294495349|ref|YP_003541842.1| - 6.5e-11 41.8 0.0 8.2e-11 41.5 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|294495349|ref|YP_003541842.1| - 0.00011 22.2 0.0 0.00034 20.5 0.0 1.8 2 1 0 2 2 2 1 Winged helix DNA-binding domain TGT PF01702.13 gi|294495350|ref|YP_003541843.1| - 1.6e-55 188.0 0.0 2e-55 187.6 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase UbiA PF01040.13 gi|294495351|ref|YP_003541844.1| - 2.9e-31 108.6 18.8 3.8e-31 108.2 13.1 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DAO PF01266.19 gi|294495352|ref|YP_003541845.1| - 3.1e-12 46.0 0.0 9.9e-06 24.6 0.0 2.6 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|294495352|ref|YP_003541845.1| - 2.8e-08 33.2 0.0 8e-06 25.1 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|294495352|ref|YP_003541845.1| - 8.9e-07 27.7 0.2 5.2e-05 21.8 0.0 2.3 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|294495352|ref|YP_003541845.1| - 2.5e-06 26.5 0.0 6.3e-06 25.2 0.0 1.7 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|294495352|ref|YP_003541845.1| - 2.1e-05 23.8 0.0 3.3e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|294495352|ref|YP_003541845.1| - 2.3e-05 23.6 0.0 4e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|294495352|ref|YP_003541845.1| - 4.2e-05 23.5 0.0 0.00012 21.9 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|294495352|ref|YP_003541845.1| - 4.8e-05 22.4 0.0 0.0001 21.3 0.0 1.5 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|294495352|ref|YP_003541845.1| - 0.00048 20.0 0.0 0.00088 19.2 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|294495352|ref|YP_003541845.1| - 0.0088 16.1 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|294495352|ref|YP_003541845.1| - 0.023 13.5 0.0 0.04 12.7 0.0 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A Radical_SAM PF04055.16 gi|294495353|ref|YP_003541846.1| - 5.1e-18 65.7 0.0 8.4e-18 65.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|294495353|ref|YP_003541846.1| - 5.7e-07 29.7 0.3 1.5e-06 28.4 0.2 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|294495353|ref|YP_003541846.1| - 1.1e-05 25.5 0.0 2.1e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|294495353|ref|YP_003541846.1| - 0.0054 16.7 0.0 0.0097 15.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TBPIP PF07106.8 gi|294495354|ref|YP_003541847.1| - 0.00045 19.8 38.8 0.04 13.4 6.7 3.6 1 1 3 4 4 4 3 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ERM PF00769.14 gi|294495354|ref|YP_003541847.1| - 0.2 11.1 40.8 1.5 8.3 14.1 2.2 1 1 1 2 2 2 0 Ezrin/radixin/moesin family Fez1 PF06818.10 gi|294495354|ref|YP_003541847.1| - 0.3 11.1 31.1 0.21 11.5 9.8 2.3 1 1 1 2 2 2 0 Fez1 DUF1771 PF08590.5 gi|294495354|ref|YP_003541847.1| - 0.83 9.7 14.7 0.72 9.9 2.8 4.2 4 1 0 4 4 4 0 Domain of unknown function (DUF1771) Dppa2_A PF14049.1 gi|294495354|ref|YP_003541847.1| - 1.1 9.1 4.5 0.24 11.2 0.4 1.9 2 0 0 2 2 2 0 Dppa2/4 conserved region in higher vertebrates DUF848 PF05852.6 gi|294495354|ref|YP_003541847.1| - 1.6 8.5 30.5 0.14 11.9 5.4 3.4 1 1 1 3 3 3 0 Gammaherpesvirus protein of unknown function (DUF848) AAA_13 PF13166.1 gi|294495354|ref|YP_003541847.1| - 1.8 6.9 41.9 0.62 8.4 13.0 2.1 1 1 1 2 2 2 0 AAA domain GAS PF13851.1 gi|294495354|ref|YP_003541847.1| - 3.7 6.7 43.3 0.26 10.4 11.0 3.0 2 1 1 3 3 3 0 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.17 gi|294495354|ref|YP_003541847.1| - 4.2 7.4 47.8 4.4 7.3 9.0 4.0 1 1 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain YkyA PF10368.4 gi|294495354|ref|YP_003541847.1| - 5.6 6.2 41.2 0.2 10.9 12.7 2.8 2 1 0 2 2 2 0 Putative cell-wall binding lipoprotein HAD PF12710.2 gi|294495355|ref|YP_003541848.1| - 3.1e-17 63.3 0.1 3.7e-17 63.1 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|294495355|ref|YP_003541848.1| - 8.3e-13 49.2 0.2 6.8e-11 42.9 0.0 2.1 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|294495355|ref|YP_003541848.1| - 8.9e-11 41.8 0.1 7.8e-09 35.4 0.0 2.5 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|294495355|ref|YP_003541848.1| - 1.3e-08 35.2 0.1 6e-08 33.0 0.0 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|294495355|ref|YP_003541848.1| - 1.7e-08 33.9 0.1 3e-07 29.8 0.0 2.0 1 1 0 1 1 1 1 Putative Phosphatase S6PP PF05116.8 gi|294495355|ref|YP_003541848.1| - 0.038 13.2 0.1 1.1 8.5 0.0 2.1 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Acid_PPase PF12689.2 gi|294495355|ref|YP_003541848.1| - 0.079 12.5 0.1 0.52 9.9 0.1 2.1 1 1 0 1 1 1 0 Acid Phosphatase MTD PF01993.13 gi|294495356|ref|YP_003541849.1| - 3.8e-93 311.5 0.5 4.3e-93 311.3 0.4 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase DUF768 PF05589.6 gi|294495356|ref|YP_003541849.1| - 0.068 13.1 0.1 0.23 11.4 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF768) Baculo_11_kDa PF06143.6 gi|294495357|ref|YP_003541850.1| - 0.0072 15.6 1.0 0.0075 15.6 0.7 1.1 1 0 0 1 1 1 1 Baculovirus 11 kDa family DUF3753 PF12575.3 gi|294495357|ref|YP_003541850.1| - 0.015 15.1 3.0 0.022 14.5 2.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3753) OSTMP1 PF09777.4 gi|294495357|ref|YP_003541850.1| - 0.085 12.0 0.3 0.089 11.9 0.2 1.0 1 0 0 1 1 1 0 Osteopetrosis-associated transmembrane protein 1 precursor TRP PF06011.7 gi|294495357|ref|YP_003541850.1| - 0.089 11.3 0.4 0.08 11.4 0.3 1.0 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel DUF2681 PF10883.3 gi|294495357|ref|YP_003541850.1| - 0.11 12.7 0.6 0.11 12.6 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) Ly49 PF08391.5 gi|294495357|ref|YP_003541850.1| - 0.14 12.3 0.7 0.14 12.2 0.5 1.0 1 0 0 1 1 1 0 Ly49-like protein, N-terminal region DUF4492 PF14899.1 gi|294495357|ref|YP_003541850.1| - 0.16 11.4 2.8 0.16 11.4 1.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4492) Gemini_mov PF01708.11 gi|294495357|ref|YP_003541850.1| - 0.17 11.4 0.6 0.19 11.3 0.4 1.0 1 0 0 1 1 1 0 Geminivirus putative movement protein Holin_BlyA PF05102.7 gi|294495357|ref|YP_003541850.1| - 2.2 8.0 5.5 3.2 7.5 3.8 1.3 1 1 0 1 1 1 0 holin, BlyA family Sec61_beta PF03911.11 gi|294495357|ref|YP_003541850.1| - 2.7 7.8 6.0 3.5 7.5 4.2 1.2 1 0 0 1 1 1 0 Sec61beta family PAC2 PF09754.4 gi|294495358|ref|YP_003541851.1| - 7.4e-54 182.9 0.4 8.7e-54 182.6 0.2 1.0 1 0 0 1 1 1 1 PAC2 family DUF473 PF04322.7 gi|294495359|ref|YP_003541852.1| - 1.7e-41 140.6 2.3 1.9e-41 140.4 1.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) MerR_2 PF13591.1 gi|294495359|ref|YP_003541852.1| - 0.013 15.1 0.0 0.035 13.7 0.0 1.8 1 1 1 2 2 2 0 MerR HTH family regulatory protein gp37_C PF12604.3 gi|294495359|ref|YP_003541852.1| - 0.033 13.9 0.0 0.048 13.4 0.0 1.3 1 0 0 1 1 1 0 Tail fiber protein gp37 C terminal PRE_C2HC PF07530.6 gi|294495359|ref|YP_003541852.1| - 0.091 12.6 0.5 6.3 6.7 0.0 2.1 2 0 0 2 2 2 0 Associated with zinc fingers DUF169 PF02596.10 gi|294495360|ref|YP_003541853.1| - 3.2e-47 160.7 0.1 3.8e-47 160.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Endonuclease_5 PF04493.9 gi|294495361|ref|YP_003541854.1| - 7.3e-41 139.7 0.0 8e-41 139.6 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|294495361|ref|YP_003541854.1| - 0.012 14.7 0.0 0.018 14.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF99 DUF179 PF02622.10 gi|294495361|ref|YP_003541854.1| - 0.064 12.8 0.0 0.087 12.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized ACR, COG1678 tRNA-synt_2d PF01409.15 gi|294495362|ref|YP_003541855.1| - 7.6e-55 185.7 0.0 9.6e-50 169.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|294495362|ref|YP_003541855.1| - 1.1e-05 25.1 0.2 3.8e-05 23.3 0.2 1.9 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) DUF4440 PF14534.1 gi|294495362|ref|YP_003541855.1| - 0.11 12.7 0.0 0.31 11.2 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) Translin PF01997.11 gi|294495363|ref|YP_003541856.1| - 2.3e-30 105.7 0.4 2.8e-30 105.4 0.3 1.1 1 0 0 1 1 1 1 Translin family UPF0147 PF03685.8 gi|294495364|ref|YP_003541857.1| - 3.1e-37 126.3 2.1 3.4e-37 126.1 1.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|294495364|ref|YP_003541857.1| - 0.0015 18.5 0.1 0.2 11.7 0.0 2.1 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0253) YtzH PF14165.1 gi|294495364|ref|YP_003541857.1| - 0.028 14.6 0.3 0.2 11.9 0.1 1.9 1 1 1 2 2 2 0 YtzH-like protein Auto_anti-p27 PF06677.7 gi|294495365|ref|YP_003541858.1| - 4.9e-17 61.4 0.3 1.7e-16 59.7 0.7 1.5 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|294495365|ref|YP_003541858.1| - 0.011 15.5 0.8 0.019 14.7 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF2072 PF09845.4 gi|294495365|ref|YP_003541858.1| - 0.021 14.7 3.0 0.043 13.7 2.1 1.7 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) DUF2513 PF10711.4 gi|294495365|ref|YP_003541858.1| - 0.11 12.5 0.1 0.19 11.8 0.1 1.6 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) ERCC4 PF02732.10 gi|294495366|ref|YP_003541859.1| - 6.1e-26 90.8 0.0 1.7e-25 89.4 0.0 1.7 1 0 0 1 1 1 1 ERCC4 domain Helicase_C PF00271.26 gi|294495366|ref|YP_003541859.1| - 1.6e-19 69.4 0.0 8.9e-19 67.1 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|294495366|ref|YP_003541859.1| - 4.3e-19 68.6 0.4 1.9e-18 66.5 0.0 2.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|294495366|ref|YP_003541859.1| - 1.5e-13 50.9 0.0 4.6e-13 49.3 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|294495366|ref|YP_003541859.1| - 5.8e-11 42.1 0.1 4.9e-10 39.1 0.0 2.6 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|294495366|ref|YP_003541859.1| - 3.4e-10 39.9 0.0 3.4e-09 36.7 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|294495366|ref|YP_003541859.1| - 0.00091 18.7 0.1 0.0051 16.4 0.1 2.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif DUF1870 PF08965.5 gi|294495366|ref|YP_003541859.1| - 0.0036 16.9 0.0 0.014 15.0 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1870) 5_3_exonuc PF01367.15 gi|294495366|ref|YP_003541859.1| - 0.0091 16.2 0.0 0.082 13.1 0.0 2.5 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold SecA_DEAD PF07517.9 gi|294495366|ref|YP_003541859.1| - 0.011 15.0 0.2 0.051 12.8 0.0 2.0 2 0 0 2 2 2 0 SecA DEAD-like domain tRNA-synt_2b PF00587.20 gi|294495367|ref|YP_003541860.1| - 1.9e-59 200.0 0.3 3e-59 199.4 0.2 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|294495367|ref|YP_003541860.1| - 4.7e-22 77.7 0.7 3.3e-21 75.0 0.0 2.7 3 0 0 3 3 3 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|294495367|ref|YP_003541860.1| - 0.0058 15.4 0.5 0.89 8.2 0.1 2.5 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) DUF2072 PF09845.4 gi|294495367|ref|YP_003541860.1| - 0.053 13.4 0.0 0.2 11.5 0.0 2.1 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) Baculo_ME53 PF06061.6 gi|294495367|ref|YP_003541860.1| - 0.11 11.5 1.8 0.18 10.7 1.2 1.2 1 0 0 1 1 1 0 Baculoviridae ME53 DeoC PF01791.4 gi|294495368|ref|YP_003541861.1| - 1.1e-56 191.7 0.0 1.3e-56 191.5 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.19 gi|294495368|ref|YP_003541861.1| - 0.00018 21.0 0.2 0.00048 19.5 0.1 1.7 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.12 gi|294495368|ref|YP_003541861.1| - 0.0031 16.6 0.0 0.72 8.9 0.0 2.3 1 1 1 2 2 2 2 Thiamine monophosphate synthase/TENI dUTPase PF00692.14 gi|294495369|ref|YP_003541862.1| - 5.5e-11 42.0 0.0 7.4e-11 41.6 0.0 1.2 1 0 0 1 1 1 1 dUTPase DUF420 PF04238.7 gi|294495370|ref|YP_003541863.1| - 2.1e-05 24.4 16.6 2.6e-05 24.1 11.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF420) Nucleos_tra2_N PF01773.15 gi|294495370|ref|YP_003541863.1| - 0.027 14.7 2.0 0.027 14.7 1.4 2.3 1 1 2 3 3 3 0 Na+ dependent nucleoside transporter N-terminus DUF2306 PF10067.4 gi|294495370|ref|YP_003541863.1| - 7.7 6.6 12.3 1.5 9.0 1.6 2.2 1 1 0 2 2 2 0 Predicted membrane protein (DUF2306) Prok-JAB PF14464.1 gi|294495371|ref|YP_003541864.1| - 2.7e-19 68.6 0.0 3.2e-19 68.4 0.0 1.0 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|294495371|ref|YP_003541864.1| - 7.3e-09 35.3 0.0 9.4e-09 35.0 0.0 1.1 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease DUF4329 PF14220.1 gi|294495371|ref|YP_003541864.1| - 0.014 15.3 0.1 0.032 14.1 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4329) Toxin-JAB1 PF15659.1 gi|294495371|ref|YP_003541864.1| - 0.061 13.2 0.0 0.078 12.8 0.0 1.1 1 0 0 1 1 1 0 JAB-like toxin 1 Radical_SAM PF04055.16 gi|294495372|ref|YP_003541865.1| - 5.8e-12 46.0 0.1 1.2e-11 45.0 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily TusA PF01206.12 gi|294495373|ref|YP_003541866.1| - 1.4e-19 69.4 0.0 1.6e-19 69.2 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|294495373|ref|YP_003541866.1| - 0.058 12.9 0.0 0.15 11.6 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) DUF169 PF02596.10 gi|294495374|ref|YP_003541867.1| - 4.1e-36 124.4 0.1 1.5e-24 86.6 0.1 2.3 1 1 1 2 2 2 2 Uncharacterised ArCR, COG2043 SLA_LP_auto_ag PF05889.8 gi|294495375|ref|YP_003541868.1| - 8.3e-20 70.6 0.0 1.6e-19 69.6 0.0 1.4 1 1 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|294495375|ref|YP_003541868.1| - 1.2e-17 63.6 0.0 1.8e-17 63.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|294495375|ref|YP_003541868.1| - 1.3e-08 34.2 0.0 8.4e-08 31.5 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|294495375|ref|YP_003541868.1| - 1.1e-06 27.9 0.1 1.8e-05 23.9 0.0 2.1 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|294495375|ref|YP_003541868.1| - 9.3e-06 24.9 0.0 2.6e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase OMS28_porin PF03532.8 gi|294495377|ref|YP_003541870.1| - 0.046 12.7 0.9 0.054 12.5 0.6 1.1 1 0 0 1 1 1 0 OMS28 porin BRCA-2_OB3 PF09104.5 gi|294495377|ref|YP_003541870.1| - 0.059 13.1 0.1 0.061 13.1 0.1 1.2 1 0 0 1 1 1 0 BRCA2, oligonucleotide/oligosaccharide-binding, domain 3 Toxin_52 PF15605.1 gi|294495377|ref|YP_003541870.1| - 0.064 13.1 0.3 0.1 12.4 0.1 1.4 1 1 0 1 1 1 0 Putative toxin 52 DUF1484 PF07363.6 gi|294495377|ref|YP_003541870.1| - 0.12 12.7 0.0 0.14 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1484) DUF592 PF04574.8 gi|294495377|ref|YP_003541870.1| - 0.34 10.4 2.6 0.39 10.2 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF592) Synaptobrevin PF00957.16 gi|294495377|ref|YP_003541870.1| - 0.5 9.9 4.7 0.91 9.1 1.2 2.0 1 1 1 2 2 2 0 Synaptobrevin PHO4 PF01384.15 gi|294495378|ref|YP_003541871.1| - 5.9e-61 205.9 35.3 8e-61 205.4 24.4 1.2 1 0 0 1 1 1 1 Phosphate transporter family FUSC-like PF12805.2 gi|294495378|ref|YP_003541871.1| - 0.77 8.6 2.9 1.2 7.9 1.8 1.6 1 1 0 1 1 1 0 FUSC-like inner membrane protein yccS DUF1628 PF07790.6 gi|294495378|ref|YP_003541871.1| - 0.93 10.2 10.1 11 6.8 2.5 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1628) NIR_SIR PF01077.17 gi|294495379|ref|YP_003541872.1| - 5.9e-35 119.9 0.1 8e-35 119.5 0.1 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|294495379|ref|YP_003541872.1| - 2.1e-20 72.0 0.0 3.7e-20 71.3 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.22 gi|294495379|ref|YP_003541872.1| - 7.1e-16 57.0 11.5 5.5e-08 32.0 2.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294495379|ref|YP_003541872.1| - 9.9e-14 50.5 15.3 2.8e-08 33.2 0.5 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294495379|ref|YP_003541872.1| - 1.8e-12 47.3 25.0 4.7e-10 39.6 7.4 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294495379|ref|YP_003541872.1| - 9.2e-12 44.5 19.3 5.2e-09 35.7 7.9 2.0 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294495379|ref|YP_003541872.1| - 3.4e-08 33.6 11.2 3.4e-08 33.6 7.8 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294495379|ref|YP_003541872.1| - 3.4e-08 32.9 17.3 8.8e-05 22.1 1.1 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|294495379|ref|YP_003541872.1| - 6.4e-08 32.3 22.4 1.2e-05 25.0 7.4 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294495379|ref|YP_003541872.1| - 6.1e-06 26.8 11.2 0.0049 17.5 0.9 3.1 3 1 1 4 4 3 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|294495379|ref|YP_003541872.1| - 7.4e-05 23.2 18.1 0.1 13.1 0.9 4.1 2 2 1 3 3 3 3 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|294495379|ref|YP_003541872.1| - 0.00013 21.9 15.0 0.0014 18.6 8.8 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|294495379|ref|YP_003541872.1| - 0.001 19.4 22.5 0.031 14.8 3.3 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|294495379|ref|YP_003541872.1| - 0.02 15.1 4.0 0.02 15.1 2.8 3.6 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|294495379|ref|YP_003541872.1| - 0.16 12.3 14.6 1.4 9.3 1.6 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|294495379|ref|YP_003541872.1| - 0.17 11.7 4.4 0.19 11.6 2.0 1.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|294495379|ref|YP_003541872.1| - 0.2 12.0 17.1 1.6 9.1 3.3 4.0 4 1 0 4 4 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|294495379|ref|YP_003541872.1| - 0.21 11.9 19.5 0.49 10.7 3.5 2.9 2 1 1 3 3 2 0 4Fe-4S dicluster domain PAPS_reduct PF01507.14 gi|294495380|ref|YP_003541873.1| - 3.4e-49 167.0 0.0 4.2e-49 166.7 0.0 1.1 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP-sulfurylase PF01747.12 gi|294495381|ref|YP_003541874.1| - 1.8e-87 292.1 0.0 2.5e-87 291.6 0.0 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.1 gi|294495381|ref|YP_003541874.1| - 2.1e-51 173.5 0.0 2.9e-51 173.0 0.0 1.2 1 0 0 1 1 1 1 PUA-like domain NMT1_2 PF13379.1 gi|294495382|ref|YP_003541875.1| - 9.1e-28 97.3 0.0 1.2e-27 96.9 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|294495382|ref|YP_003541875.1| - 4e-12 46.1 0.0 8.3e-12 45.1 0.0 1.5 1 1 0 1 1 1 1 NMT1/THI5 like DUF3834 PF12916.2 gi|294495382|ref|YP_003541875.1| - 3.8e-05 22.7 0.0 0.00044 19.3 0.0 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF3834) OpuAC PF04069.7 gi|294495382|ref|YP_003541875.1| - 0.0057 16.0 0.0 0.027 13.8 0.0 1.9 1 1 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system Phosphonate-bd PF12974.2 gi|294495382|ref|YP_003541875.1| - 0.16 11.3 0.0 8 5.7 0.0 2.2 2 0 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein ThiS PF02597.15 gi|294495383|ref|YP_003541876.1| - 4.4e-17 62.2 0.0 4.8e-17 62.1 0.0 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|294495383|ref|YP_003541876.1| - 0.0012 18.9 0.0 0.0013 18.7 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) PALP PF00291.20 gi|294495384|ref|YP_003541877.1| - 2.6e-58 197.6 0.1 3.2e-58 197.3 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zinc_ribbon_2 PF13240.1 gi|294495384|ref|YP_003541877.1| - 1.1 8.8 6.1 2 8.0 4.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain ThiF PF00899.16 gi|294495385|ref|YP_003541878.1| - 5.3e-42 142.8 0.0 7.8e-42 142.3 0.0 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|294495385|ref|YP_003541878.1| - 3.1e-33 113.1 0.0 5e-33 112.5 0.0 1.3 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|294495385|ref|YP_003541878.1| - 9.7e-05 22.4 0.0 0.00021 21.4 0.0 1.5 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|294495385|ref|YP_003541878.1| - 0.0022 17.0 0.1 0.0032 16.5 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Rad50_zn_hook PF04423.9 gi|294495385|ref|YP_003541878.1| - 0.054 12.9 0.0 0.13 11.7 0.0 1.6 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-ISL3 PF14690.1 gi|294495385|ref|YP_003541878.1| - 0.12 12.4 0.4 0.23 11.5 0.3 1.5 1 0 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 UDPG_MGDP_dh_N PF03721.9 gi|294495385|ref|YP_003541878.1| - 0.45 9.8 2.0 1.1 8.5 0.6 1.9 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TusA PF01206.12 gi|294495386|ref|YP_003541879.1| - 1.8e-21 75.4 0.0 2.1e-21 75.3 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|294495386|ref|YP_003541879.1| - 0.031 13.8 0.0 0.054 13.0 0.0 1.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) Prefoldin_2 PF01920.15 gi|294495387|ref|YP_003541880.1| - 3.2e-23 81.5 19.6 3.6e-23 81.3 13.6 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF948 PF06103.6 gi|294495387|ref|YP_003541880.1| - 0.027 14.3 11.2 0.28 11.0 0.6 2.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF4559 PF15112.1 gi|294495387|ref|YP_003541880.1| - 0.031 13.4 7.0 0.031 13.4 4.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) GAS PF13851.1 gi|294495387|ref|YP_003541880.1| - 0.038 13.1 18.5 0.49 9.5 12.9 1.9 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding CENP-F_leu_zip PF10473.4 gi|294495387|ref|YP_003541880.1| - 0.041 13.7 15.4 0.27 11.0 2.0 2.0 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3418 PF11898.3 gi|294495387|ref|YP_003541880.1| - 0.053 11.9 6.3 0.065 11.6 4.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3418) GspL_C PF12693.2 gi|294495387|ref|YP_003541880.1| - 0.069 12.9 11.5 0.16 11.7 7.8 1.7 1 1 0 1 1 1 0 GspL periplasmic domain BLOC1_2 PF10046.4 gi|294495387|ref|YP_003541880.1| - 0.072 13.2 8.1 0.87 9.7 1.6 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1978 PF09321.5 gi|294495387|ref|YP_003541880.1| - 0.077 12.4 7.7 0.099 12.0 5.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1978) UPF0147 PF03685.8 gi|294495387|ref|YP_003541880.1| - 0.08 12.8 0.8 0.16 11.8 0.2 1.8 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0147) Seryl_tRNA_N PF02403.17 gi|294495387|ref|YP_003541880.1| - 0.083 12.9 10.1 1.3 9.1 1.7 2.3 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain PsiA PF06952.6 gi|294495387|ref|YP_003541880.1| - 0.1 11.6 7.0 0.13 11.2 4.8 1.1 1 0 0 1 1 1 0 PsiA protein DUF3584 PF12128.3 gi|294495387|ref|YP_003541880.1| - 0.11 9.7 12.0 0.13 9.5 8.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ADIP PF11559.3 gi|294495387|ref|YP_003541880.1| - 0.16 11.8 13.3 0.18 11.6 0.6 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Enkurin PF13864.1 gi|294495387|ref|YP_003541880.1| - 0.18 12.0 9.8 0.46 10.7 1.1 2.2 2 0 0 2 2 2 0 Calmodulin-binding SRP54 PF00448.17 gi|294495387|ref|YP_003541880.1| - 0.19 11.1 5.7 0.24 10.8 4.0 1.1 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Leu_zip PF15294.1 gi|294495387|ref|YP_003541880.1| - 0.23 10.5 15.9 0.12 11.4 2.3 2.0 1 1 1 2 2 2 0 Leucine zipper eIF3_subunit PF08597.5 gi|294495387|ref|YP_003541880.1| - 0.29 10.6 5.5 0.4 10.2 3.9 1.3 1 1 0 1 1 1 0 Translation initiation factor eIF3 subunit WASH-7_mid PF14744.1 gi|294495387|ref|YP_003541880.1| - 0.31 9.8 4.5 0.37 9.5 3.1 1.0 1 0 0 1 1 1 0 WASH complex subunit 7 Prefoldin PF02996.12 gi|294495387|ref|YP_003541880.1| - 0.34 10.5 15.5 1.2 8.7 2.0 2.4 1 1 1 2 2 2 0 Prefoldin subunit DUF87 PF01935.12 gi|294495387|ref|YP_003541880.1| - 0.45 10.2 4.1 0.53 10.0 2.8 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF87 MCC-bdg_PDZ PF10506.4 gi|294495387|ref|YP_003541880.1| - 0.48 10.2 7.2 0.47 10.3 0.4 2.4 2 0 0 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome DegS PF05384.6 gi|294495387|ref|YP_003541880.1| - 0.73 9.0 13.7 1.5 8.0 4.5 2.1 1 1 1 2 2 2 0 Sensor protein DegS Gp-FAR-1 PF05823.7 gi|294495387|ref|YP_003541880.1| - 0.74 9.7 6.1 0.34 10.8 1.4 1.9 1 1 1 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Snf7 PF03357.16 gi|294495387|ref|YP_003541880.1| - 0.77 9.1 17.1 1.6 8.1 11.9 1.5 1 1 0 1 1 1 0 Snf7 FtsQ PF03799.10 gi|294495387|ref|YP_003541880.1| - 0.99 9.6 4.0 3.5 7.8 2.8 2.0 1 1 0 1 1 1 0 Cell division protein FtsQ Laminin_II PF06009.7 gi|294495387|ref|YP_003541880.1| - 1.1 9.0 15.2 10 5.9 10.5 1.9 1 1 0 1 1 1 0 Laminin Domain II AATF-Che1 PF13339.1 gi|294495387|ref|YP_003541880.1| - 1.2 9.2 9.0 1.7 8.7 6.3 1.2 1 0 0 1 1 1 0 Apoptosis antagonizing transcription factor Syntaxin_2 PF14523.1 gi|294495387|ref|YP_003541880.1| - 1.3 9.0 13.4 5.2 7.1 9.4 1.8 1 1 0 1 1 1 0 Syntaxin-like protein Cortex-I_coil PF09304.5 gi|294495387|ref|YP_003541880.1| - 1.4 9.0 18.9 0.73 9.9 3.7 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil Med4 PF10018.4 gi|294495387|ref|YP_003541880.1| - 1.9 7.8 16.1 0.075 12.4 4.3 2.1 1 1 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DivIC PF04977.10 gi|294495387|ref|YP_003541880.1| - 2 7.9 19.6 1.7 8.1 4.6 2.8 2 1 1 3 3 3 0 Septum formation initiator Nsp1_C PF05064.8 gi|294495387|ref|YP_003541880.1| - 2.1 8.0 14.6 1.3 8.6 1.1 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region Lebercilin PF15619.1 gi|294495387|ref|YP_003541880.1| - 2.1 7.7 17.5 7.4 5.9 12.1 1.7 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease DUF4509 PF14970.1 gi|294495387|ref|YP_003541880.1| - 2.2 7.8 9.0 0.97 9.0 0.8 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4509) WXG100 PF06013.7 gi|294495387|ref|YP_003541880.1| - 2.2 8.3 13.3 2.3 8.2 4.3 2.5 2 1 1 3 3 3 0 Proteins of 100 residues with WXG FlxA PF14282.1 gi|294495387|ref|YP_003541880.1| - 2.2 8.2 21.3 2.4 8.1 2.3 2.3 2 0 0 2 2 2 0 FlxA-like protein DivIVA PF05103.8 gi|294495387|ref|YP_003541880.1| - 2.7 8.0 14.7 6.1 6.8 2.7 2.1 1 1 1 2 2 2 0 DivIVA protein DUF4337 PF14235.1 gi|294495387|ref|YP_003541880.1| - 2.9 7.7 8.8 6 6.6 0.8 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) Phage_GPO PF05929.6 gi|294495387|ref|YP_003541880.1| - 3.2 6.9 15.8 0.44 9.7 1.7 2.0 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase FAST_2 PF08368.7 gi|294495387|ref|YP_003541880.1| - 3.2 8.1 5.4 14 6.1 0.2 2.1 2 0 0 2 2 2 0 FAST kinase-like protein, subdomain 2 TBPIP PF07106.8 gi|294495387|ref|YP_003541880.1| - 3.8 7.0 16.1 2.1 7.8 1.4 2.0 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Viral_P18 PF04521.8 gi|294495387|ref|YP_003541880.1| - 4 6.9 9.2 2.1 7.8 0.5 2.4 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein V_ATPase_I PF01496.14 gi|294495387|ref|YP_003541880.1| - 4 5.1 14.1 0.91 7.2 2.1 1.8 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF4164 PF13747.1 gi|294495387|ref|YP_003541880.1| - 4.1 7.6 12.4 1.2 9.3 2.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) DUF4239 PF14023.1 gi|294495387|ref|YP_003541880.1| - 4.1 6.6 5.4 2 7.7 2.4 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF4239) Nup54 PF13874.1 gi|294495387|ref|YP_003541880.1| - 4.2 7.0 14.6 23 4.6 10.1 2.1 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Phage_GP20 PF06810.6 gi|294495387|ref|YP_003541880.1| - 4.5 6.6 16.0 4 6.8 2.6 2.1 1 1 0 2 2 2 0 Phage minor structural protein GP20 APG6 PF04111.7 gi|294495387|ref|YP_003541880.1| - 4.7 6.1 18.2 30 3.5 12.7 1.8 1 1 0 1 1 1 0 Autophagy protein Apg6 DUF3552 PF12072.3 gi|294495387|ref|YP_003541880.1| - 5 6.2 21.1 1.7 7.7 4.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) Mnd1 PF03962.10 gi|294495387|ref|YP_003541880.1| - 5.7 6.5 15.6 35 4.0 10.9 1.9 1 1 0 1 1 1 0 Mnd1 family DUF4140 PF13600.1 gi|294495387|ref|YP_003541880.1| - 5.9 7.3 14.2 2.3 8.6 1.6 2.3 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) MRP-L28 PF09812.4 gi|294495387|ref|YP_003541880.1| - 6 6.6 11.2 0.13 12.0 1.7 2.1 2 1 0 2 2 2 0 Mitochondrial ribosomal protein L28 DUF342 PF03961.8 gi|294495387|ref|YP_003541880.1| - 7.2 4.8 10.9 13 4.0 7.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF342) Herpes_UL6 PF01763.11 gi|294495387|ref|YP_003541880.1| - 8.4 4.4 14.0 1.8 6.6 1.6 2.0 1 1 1 2 2 2 0 Herpesvirus UL6 like DUF2203 PF09969.4 gi|294495387|ref|YP_003541880.1| - 8.9 6.5 11.6 4.9e+02 0.9 8.0 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Syntaxin-6_N PF09177.6 gi|294495387|ref|YP_003541880.1| - 9.7 6.6 11.9 1.6 9.1 3.1 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DHH PF01368.15 gi|294495388|ref|YP_003541881.1| - 3e-11 43.1 0.8 6.5e-11 42.0 0.6 1.5 1 1 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|294495388|ref|YP_003541881.1| - 8.9e-10 38.1 1.9 1.3e-09 37.6 0.8 1.7 2 0 0 2 2 2 1 DHHA1 domain AMP-binding_C_2 PF14535.1 gi|294495389|ref|YP_003541882.1| - 1.5e-30 105.0 0.3 3.8e-30 103.7 0.2 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|294495389|ref|YP_003541882.1| - 2e-19 69.2 0.6 4.7e-19 68.0 0.4 1.6 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|294495389|ref|YP_003541882.1| - 2e-05 23.4 0.0 0.0049 15.5 0.0 2.6 2 1 0 2 2 2 2 Acyl-protein synthetase, LuxE ACT PF01842.20 gi|294495390|ref|YP_003541883.1| - 1.6e-15 56.1 0.1 1.3e-08 34.1 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|294495390|ref|YP_003541883.1| - 3.5e-08 33.6 0.1 0.0014 18.8 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|294495390|ref|YP_003541883.1| - 4e-06 26.2 0.2 0.0035 16.8 0.0 2.7 2 1 0 2 2 2 2 ACT domain DUF2103 PF09876.4 gi|294495391|ref|YP_003541884.1| - 1.1e-38 131.1 0.8 1.2e-38 131.0 0.5 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) DUF1464 PF07318.7 gi|294495392|ref|YP_003541885.1| - 5.4e-09 35.3 0.9 1.3e-07 30.7 0.6 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF1464) SpoIIAA-like PF11964.3 gi|294495392|ref|YP_003541885.1| - 0.055 13.7 0.0 1.2 9.4 0.0 2.4 2 0 0 2 2 2 0 SpoIIAA-like FGGY_N PF00370.16 gi|294495392|ref|YP_003541885.1| - 0.081 12.2 0.0 0.28 10.4 0.0 1.9 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain CN_hydrolase PF00795.17 gi|294495393|ref|YP_003541886.1| - 1.1e-25 90.1 0.0 1.3e-25 89.8 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Pox_M2 PF04887.7 gi|294495393|ref|YP_003541886.1| - 0.016 14.5 0.8 0.22 10.8 0.0 2.1 1 1 0 2 2 2 0 Poxvirus M2 protein TPP_enzyme_C PF02775.16 gi|294495394|ref|YP_003541887.1| - 5.3e-10 39.0 0.1 1.2e-09 37.9 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|294495394|ref|YP_003541887.1| - 0.00029 20.4 0.0 0.00051 19.6 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transket_pyr PF02779.19 gi|294495394|ref|YP_003541887.1| - 0.0036 16.8 0.0 0.0062 16.0 0.0 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain DUF1743 PF08489.6 gi|294495395|ref|YP_003541888.1| - 1.5e-22 79.5 0.1 1.6e-21 76.2 0.0 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF1743) RadC PF04002.10 gi|294495396|ref|YP_003541889.1| - 1.9e-45 153.5 0.0 2.8e-45 152.9 0.0 1.3 1 0 0 1 1 1 1 RadC-like JAB domain HHH_2 PF12826.2 gi|294495396|ref|YP_003541889.1| - 0.0027 17.5 0.0 0.0053 16.6 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif Prok-JAB PF14464.1 gi|294495396|ref|YP_003541889.1| - 0.0077 15.7 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain HhH-GPD PF00730.20 gi|294495396|ref|YP_003541889.1| - 0.013 15.7 0.0 0.016 15.5 0.0 1.3 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein Toxin-JAB1 PF15659.1 gi|294495396|ref|YP_003541889.1| - 0.013 15.3 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 JAB-like toxin 1 HHH PF00633.18 gi|294495396|ref|YP_003541889.1| - 0.031 13.9 0.0 0.11 12.1 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif MoaE PF02391.12 gi|294495397|ref|YP_003541890.1| - 3.4e-26 91.3 0.9 5.5e-26 90.6 0.6 1.3 1 0 0 1 1 1 1 MoaE protein MobB PF03205.9 gi|294495397|ref|YP_003541890.1| - 5.4e-18 65.0 1.7 1.3e-17 63.7 0.3 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|294495397|ref|YP_003541890.1| - 0.011 15.6 0.2 0.03 14.2 0.0 2.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|294495397|ref|YP_003541890.1| - 0.012 16.3 0.4 0.098 13.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain CbiA PF01656.18 gi|294495397|ref|YP_003541890.1| - 0.018 14.4 3.3 0.22 10.8 2.3 2.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Miro PF08477.8 gi|294495397|ref|YP_003541890.1| - 0.026 15.0 0.1 0.26 11.8 0.0 2.3 2 0 0 2 2 2 0 Miro-like protein AAA_25 PF13481.1 gi|294495397|ref|YP_003541890.1| - 0.061 12.7 0.1 0.44 9.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|294495397|ref|YP_003541890.1| - 0.11 12.4 0.0 0.26 11.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF2088 PF09861.4 gi|294495398|ref|YP_003541891.1| - 8.3e-71 237.2 0.1 1.4e-70 236.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) DUF362 PF04015.7 gi|294495398|ref|YP_003541891.1| - 0.019 14.4 0.1 0.029 13.8 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF362) DUF2117 PF09890.4 gi|294495399|ref|YP_003541892.1| - 5e-65 218.6 0.1 6.5e-65 218.3 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) NAD_kinase PF01513.16 gi|294495399|ref|YP_003541892.1| - 0.021 13.6 0.0 0.034 12.9 0.0 1.3 1 0 0 1 1 1 0 ATP-NAD kinase Lyase_1 PF00206.15 gi|294495400|ref|YP_003541893.1| - 8.9e-102 340.4 0.0 1.1e-101 340.1 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|294495400|ref|YP_003541893.1| - 1.5e-14 53.7 0.0 4.2e-14 52.3 0.0 1.8 1 0 0 1 1 1 1 Fumarase C C-terminus DUF684 PF05075.9 gi|294495400|ref|YP_003541893.1| - 0.036 12.6 0.0 0.057 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF684) FAD_binding_2 PF00890.19 gi|294495401|ref|YP_003541894.1| - 5.5e-116 387.8 0.0 7e-116 387.4 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|294495401|ref|YP_003541894.1| - 5.8e-41 139.3 0.6 8.9e-41 138.7 0.4 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|294495401|ref|YP_003541894.1| - 4e-13 49.0 0.3 1.4e-10 40.6 0.2 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|294495401|ref|YP_003541894.1| - 2.8e-11 43.6 0.2 5.8e-09 36.1 0.1 3.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|294495401|ref|YP_003541894.1| - 1e-08 34.1 0.3 0.00031 19.3 0.4 2.4 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.2 gi|294495401|ref|YP_003541894.1| - 1.2e-07 31.1 0.4 1e-05 24.8 0.5 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|294495401|ref|YP_003541894.1| - 1.1e-06 27.7 0.8 1.5e-05 24.0 0.6 2.2 1 1 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|294495401|ref|YP_003541894.1| - 0.00023 21.0 0.4 0.00086 19.2 0.1 2.2 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|294495401|ref|YP_003541894.1| - 0.00081 18.5 0.5 0.02 13.9 0.1 2.7 3 0 0 3 3 3 1 Thi4 family Pyr_redox PF00070.22 gi|294495401|ref|YP_003541894.1| - 0.0023 18.3 0.9 0.006 16.9 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|294495401|ref|YP_003541894.1| - 0.016 14.3 0.4 0.04 12.9 0.2 1.7 2 0 0 2 2 2 0 FAD binding domain AlaDh_PNT_C PF01262.16 gi|294495401|ref|YP_003541894.1| - 0.045 13.3 0.0 0.079 12.5 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF374 PF04028.8 gi|294495401|ref|YP_003541894.1| - 0.064 12.5 0.0 7.8 5.8 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF374) Lycopene_cycl PF05834.7 gi|294495401|ref|YP_003541894.1| - 0.068 12.0 0.2 0.1 11.4 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|294495401|ref|YP_003541894.1| - 0.071 13.3 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Fer2_3 PF13085.1 gi|294495402|ref|YP_003541895.1| - 9.1e-31 105.9 0.0 1.7e-30 105.0 0.0 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|294495402|ref|YP_003541895.1| - 3.1e-08 33.4 4.6 3.1e-08 33.4 3.2 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|294495402|ref|YP_003541895.1| - 6.1e-05 23.2 3.2 6.1e-05 23.2 2.2 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294495402|ref|YP_003541895.1| - 0.00024 20.8 5.4 0.00024 20.8 3.7 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294495402|ref|YP_003541895.1| - 0.00034 20.9 2.5 0.00034 20.9 1.7 2.6 2 1 1 3 3 2 1 4Fe-4S dicluster domain Fer2 PF00111.22 gi|294495402|ref|YP_003541895.1| - 0.00035 20.2 4.3 0.00053 19.6 0.4 2.4 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_9 PF13187.1 gi|294495402|ref|YP_003541895.1| - 0.0031 17.7 14.4 0.12 12.7 0.0 3.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294495402|ref|YP_003541895.1| - 0.076 13.4 13.1 0.22 11.9 6.9 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Peptidase_S58 PF03576.9 gi|294495402|ref|YP_003541895.1| - 0.18 10.9 0.0 0.25 10.5 0.0 1.1 1 0 0 1 1 1 0 Peptidase family S58 Fer4_15 PF13459.1 gi|294495402|ref|YP_003541895.1| - 4.4 7.9 8.8 4 8.0 0.5 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|294495402|ref|YP_003541895.1| - 5.2 7.0 12.6 1.6e+02 2.2 8.8 2.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Cytochrome_C554 PF13435.1 gi|294495403|ref|YP_003541896.1| - 2e-15 56.9 28.1 1.1e-06 28.7 4.0 4.4 2 2 1 3 3 3 3 Cytochrome c554 and c-prime Cytochrome_C7 PF14522.1 gi|294495403|ref|YP_003541896.1| - 4.8e-12 45.3 34.6 0.00018 21.0 3.3 5.1 1 1 2 3 3 3 3 Cytochrome c7 Cytochrom_C552 PF02335.10 gi|294495403|ref|YP_003541896.1| - 1.8e-11 43.3 1.4 1.8e-11 43.3 1.0 4.5 1 1 2 4 4 4 2 Cytochrome c552 Cytochrom_c3_2 PF14537.1 gi|294495403|ref|YP_003541896.1| - 2.7e-11 43.6 28.8 0.00065 19.9 6.4 4.5 2 2 1 3 3 3 3 Cytochrome c3 Cytochrom_NNT PF03264.9 gi|294495403|ref|YP_003541896.1| - 5.5e-10 38.9 26.2 0.00052 19.4 7.5 4.2 2 2 1 3 3 3 3 NapC/NirT cytochrome c family, N-terminal region Paired_CXXCH_1 PF09699.5 gi|294495403|ref|YP_003541896.1| - 5.6e-06 25.7 44.4 0.0068 15.8 0.5 6.7 5 3 2 7 7 7 4 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_CIII PF02085.11 gi|294495403|ref|YP_003541896.1| - 0.0092 16.0 36.4 0.14 12.2 3.1 4.8 2 2 2 5 5 5 4 Class III cytochrome C family zinc_ribbon_6 PF14599.1 gi|294495403|ref|YP_003541896.1| - 0.046 13.5 0.3 0.046 13.5 0.2 5.3 7 1 0 7 7 7 0 Zinc-ribbon Gin PF10764.4 gi|294495403|ref|YP_003541896.1| - 0.58 9.9 0.1 0.58 9.9 0.0 2.9 4 0 0 4 4 4 0 Inhibitor of sigma-G Gin DDE_Tnp_IS1 PF03400.8 gi|294495404|ref|YP_003541897.1| - 3.3e-13 49.8 0.1 5.1e-13 49.2 0.1 1.3 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.1 gi|294495404|ref|YP_003541897.1| - 1.8e-07 30.5 0.2 9.3e-07 28.3 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|294495404|ref|YP_003541897.1| - 8e-07 28.5 0.0 1.7e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|294495404|ref|YP_003541897.1| - 2.8e-06 27.2 0.0 6.1e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|294495404|ref|YP_003541897.1| - 0.00042 20.4 0.0 0.00079 19.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix Zn_Tnp_IS1 PF03811.8 gi|294495404|ref|YP_003541897.1| - 0.0013 18.1 7.1 0.0027 17.1 4.9 1.6 1 0 0 1 1 1 1 InsA N-terminal domain HTH_Tnp_1 PF01527.15 gi|294495404|ref|YP_003541897.1| - 0.0017 18.2 0.0 0.0042 16.9 0.0 1.6 1 0 0 1 1 1 1 Transposase HTH_38 PF13936.1 gi|294495404|ref|YP_003541897.1| - 0.0021 17.5 0.0 0.0043 16.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2387 PF09526.5 gi|294495404|ref|YP_003541897.1| - 0.0021 17.9 0.4 0.0057 16.5 0.3 1.7 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|294495404|ref|YP_003541897.1| - 0.0052 16.5 5.1 0.0052 16.5 3.5 1.7 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Sigma70_r4_2 PF08281.7 gi|294495404|ref|YP_003541897.1| - 0.016 14.6 0.0 0.031 13.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_IS630 PF01710.11 gi|294495404|ref|YP_003541897.1| - 0.056 13.1 0.1 0.19 11.3 0.0 1.9 2 0 0 2 2 2 0 Transposase Elf1 PF05129.8 gi|294495404|ref|YP_003541897.1| - 0.071 12.8 0.8 0.24 11.0 0.6 1.9 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf-Mss51 PF13824.1 gi|294495404|ref|YP_003541897.1| - 0.095 12.5 1.3 0.25 11.2 0.9 1.7 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.5 gi|294495404|ref|YP_003541897.1| - 0.19 11.6 3.5 1.9 8.5 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|294495404|ref|YP_003541897.1| - 0.28 10.9 2.1 0.38 10.5 0.8 1.7 2 0 0 2 2 1 0 zinc-ribbons OrfB_Zn_ribbon PF07282.6 gi|294495404|ref|YP_003541897.1| - 0.37 10.4 5.8 0.86 9.2 2.1 2.5 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Rubredoxin PF00301.15 gi|294495404|ref|YP_003541897.1| - 1.4 8.8 3.8 2 8.3 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin DUF1638 PF07796.6 gi|294495405|ref|YP_003541898.1| - 1.1e-35 122.7 0.0 1.5e-35 122.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) B12-binding PF02310.14 gi|294495406|ref|YP_003541899.1| - 6.2e-20 71.2 0.2 8.9e-20 70.7 0.1 1.2 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|294495406|ref|YP_003541899.1| - 0.00017 21.5 0.1 0.00032 20.6 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain Surf_Ag_VNR PF07244.10 gi|294495406|ref|YP_003541899.1| - 0.065 13.6 0.3 5 7.6 0.0 2.6 3 0 0 3 3 3 0 Surface antigen variable number repeat Helicase_C PF00271.26 gi|294495406|ref|YP_003541899.1| - 0.066 13.0 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Helicase conserved C-terminal domain MgtE PF01769.11 gi|294495407|ref|YP_003541900.1| - 3e-22 79.3 9.1 5e-22 78.6 6.3 1.3 1 0 0 1 1 1 1 Divalent cation transporter DUF2975 PF11188.3 gi|294495407|ref|YP_003541900.1| - 0.53 9.9 8.0 0.37 10.5 4.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2975) MgtE PF01769.11 gi|294495408|ref|YP_003541901.1| - 2.2e-17 63.6 11.9 2.2e-17 63.6 8.2 1.5 2 0 0 2 2 2 1 Divalent cation transporter TrkA_C PF02080.16 gi|294495409|ref|YP_003541902.1| - 1.1e-23 82.6 0.1 4e-11 42.3 0.0 2.6 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|294495409|ref|YP_003541902.1| - 3.6e-15 56.1 17.2 2.7e-09 37.3 4.7 2.6 2 1 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|294495409|ref|YP_003541902.1| - 0.00086 18.5 9.4 0.049 12.8 1.2 2.2 2 0 0 2 2 2 2 Protein of unknown function DUF47 Sua5_yciO_yrdC PF01300.13 gi|294495411|ref|YP_003541904.1| - 4.8e-60 201.8 0.1 7.5e-60 201.2 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.8 gi|294495411|ref|YP_003541904.1| - 4.7e-27 94.5 0.0 7.9e-27 93.8 0.0 1.4 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding PhaG_MnhG_YufB PF03334.9 gi|294495412|ref|YP_003541905.1| - 3.1e-24 84.7 6.9 3.8e-24 84.5 4.8 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.8 gi|294495413|ref|YP_003541906.1| - 2.6e-18 66.0 13.1 2.5e-17 62.8 4.6 2.0 2 0 0 2 2 2 2 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2149 PF09919.4 gi|294495413|ref|YP_003541906.1| - 0.057 13.5 3.0 0.55 10.3 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2149) Clc-like PF07062.7 gi|294495413|ref|YP_003541906.1| - 8.9 5.5 8.2 41 3.3 5.5 1.8 1 1 0 1 1 1 0 Clc-like MNHE PF01899.11 gi|294495414|ref|YP_003541907.1| - 2.5e-44 150.6 0.2 2.8e-44 150.4 0.1 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Oxidored_q1 PF00361.15 gi|294495415|ref|YP_003541908.1| - 2.6e-60 204.0 26.7 2.6e-60 204.0 18.5 3.2 4 0 0 4 4 4 2 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|294495415|ref|YP_003541908.1| - 0.00023 20.4 8.1 0.00023 20.4 5.6 3.4 2 2 1 3 3 3 2 NADH dehydrogenase I, subunit N related protein Ninjurin PF04923.7 gi|294495415|ref|YP_003541908.1| - 0.2 11.3 9.5 0.23 11.1 0.5 3.0 2 0 0 2 2 2 0 Ninjurin Oxidored_q2 PF00420.19 gi|294495416|ref|YP_003541909.1| - 1.7e-30 104.4 2.1 2e-30 104.2 1.5 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.4 gi|294495416|ref|YP_003541909.1| - 0.018 14.8 2.5 0.018 14.8 1.7 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2108) MarC PF01914.12 gi|294495416|ref|YP_003541909.1| - 0.12 11.5 0.1 0.12 11.5 0.1 2.1 2 0 0 2 2 2 0 MarC family integral membrane protein MnhB PF04039.8 gi|294495417|ref|YP_003541910.1| - 7.1e-26 90.6 12.9 7.9e-26 90.5 8.9 1.0 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q1 PF00361.15 gi|294495418|ref|YP_003541911.1| - 5.2e-71 239.0 19.8 5.2e-71 239.0 13.7 3.0 4 0 0 4 4 4 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4040 PF13244.1 gi|294495418|ref|YP_003541911.1| - 6.5e-19 67.6 12.0 6.5e-19 67.6 8.3 4.3 4 0 0 4 4 4 1 Domain of unknown function (DUF4040) Oxidored_q1_N PF00662.15 gi|294495418|ref|YP_003541911.1| - 5.6e-09 35.4 0.3 5.6e-09 35.4 0.2 3.9 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF3357 PF11837.3 gi|294495419|ref|YP_003541912.1| - 0.0095 15.7 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3357) Cupredoxin_1 PF13473.1 gi|294495419|ref|YP_003541912.1| - 0.1 12.4 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Cupredoxin-like domain DEAD PF00270.24 gi|294495420|ref|YP_003541913.1| - 7.2e-26 90.6 0.0 1.4e-25 89.7 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|294495420|ref|YP_003541913.1| - 8.2e-18 64.7 0.0 2.4e-17 63.2 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) TPR_11 PF13414.1 gi|294495420|ref|YP_003541913.1| - 1.5e-11 43.7 0.5 5.6e-07 29.1 0.1 2.8 2 0 0 2 2 2 2 TPR repeat Helicase_C PF00271.26 gi|294495420|ref|YP_003541913.1| - 4e-11 42.6 0.0 3.3e-10 39.6 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain TPR_1 PF00515.23 gi|294495420|ref|YP_003541913.1| - 1e-10 40.7 0.5 0.024 14.2 0.0 4.0 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|294495420|ref|YP_003541913.1| - 3.6e-09 35.8 0.0 0.026 14.4 0.0 4.1 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|294495420|ref|YP_003541913.1| - 1.6e-07 31.5 0.0 6e-05 23.2 0.0 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|294495420|ref|YP_003541913.1| - 2.3e-05 24.1 0.2 1.8 8.4 0.0 3.5 2 1 1 3 3 3 2 Fis1 C-terminal tetratricopeptide repeat TPR_8 PF13181.1 gi|294495420|ref|YP_003541913.1| - 3.5e-05 23.2 0.2 3.4 7.6 0.0 3.9 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|294495420|ref|YP_003541913.1| - 0.00029 21.3 0.0 0.0021 18.6 0.0 2.4 1 1 1 2 2 2 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|294495420|ref|YP_003541913.1| - 0.001 19.1 0.6 0.0082 16.2 0.3 2.5 2 1 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.1 gi|294495420|ref|YP_003541913.1| - 0.001 19.4 0.0 3.2 8.6 0.0 3.6 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|294495420|ref|YP_003541913.1| - 0.002 18.0 0.2 0.25 11.3 0.0 3.2 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|294495420|ref|YP_003541913.1| - 0.0031 17.5 1.1 0.038 14.1 0.0 3.2 3 0 0 3 3 2 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|294495420|ref|YP_003541913.1| - 0.012 15.3 0.1 20 5.2 0.0 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|294495420|ref|YP_003541913.1| - 0.08 13.4 0.1 1.9 9.1 0.0 3.1 3 1 0 3 3 3 0 Tetratricopeptide repeat Hydantoinase_A PF01968.13 gi|294495421|ref|YP_003541914.1| - 1.1e-76 257.7 1.3 1.5e-75 253.9 0.1 2.6 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|294495421|ref|YP_003541914.1| - 3.2e-40 137.4 0.7 7.6e-38 129.7 0.0 2.7 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|294495421|ref|YP_003541914.1| - 8.7e-07 27.6 0.4 0.009 14.3 0.0 2.4 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|294495421|ref|YP_003541914.1| - 0.007 15.6 0.0 0.048 12.9 0.0 2.4 2 1 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family LigD_N PF13298.1 gi|294495422|ref|YP_003541915.1| - 4.4e-40 136.0 0.0 5.6e-40 135.6 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) PPK2 PF03976.9 gi|294495423|ref|YP_003541916.1| - 5.5e-139 460.9 15.8 3.3e-85 285.0 6.5 2.0 2 0 0 2 2 2 2 Polyphosphate kinase 2 (PPK2) NurA PF09376.5 gi|294495423|ref|YP_003541916.1| - 0.025 14.0 0.0 0.059 12.8 0.0 1.6 1 0 0 1 1 1 0 NurA domain Herpes_pp85 PF04637.7 gi|294495423|ref|YP_003541916.1| - 0.041 12.1 0.1 0.062 11.5 0.1 1.2 1 0 0 1 1 1 0 Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25) AAA_33 PF13671.1 gi|294495423|ref|YP_003541916.1| - 0.12 12.2 0.7 0.82 9.5 0.3 2.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|294495423|ref|YP_003541916.1| - 0.16 12.2 6.6 1.9 8.7 0.6 3.7 3 1 0 3 3 3 0 AAA domain PMC2NT PF08066.7 gi|294495423|ref|YP_003541916.1| - 0.18 12.1 3.0 1.1 9.6 0.1 3.1 3 0 0 3 3 3 0 PMC2NT (NUC016) domain DUF4363 PF14276.1 gi|294495423|ref|YP_003541916.1| - 0.23 11.1 3.0 0.44 10.2 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4363) Ppx-GppA PF02541.11 gi|294495424|ref|YP_003541917.1| - 1.2e-33 116.5 0.0 7.5e-33 113.9 0.0 1.8 1 1 0 1 1 1 1 Ppx/GppA phosphatase family EutA PF06277.6 gi|294495424|ref|YP_003541917.1| - 0.0095 14.5 0.2 0.086 11.4 0.0 2.3 2 1 0 2 2 2 1 Ethanolamine utilisation protein EutA DUF3114 PF11311.3 gi|294495424|ref|YP_003541917.1| - 0.018 14.3 0.3 0.027 13.8 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3114) FtsA PF14450.1 gi|294495424|ref|YP_003541917.1| - 0.15 11.8 1.1 1.4 8.7 0.1 2.8 3 1 0 3 3 3 0 Cell division protein FtsA PP_kinase_C PF13090.1 gi|294495425|ref|YP_003541918.1| - 3.5e-143 476.4 6.0 5.3e-143 475.8 4.1 1.3 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|294495425|ref|YP_003541918.1| - 2.1e-49 167.8 2.6 2.1e-49 167.8 1.8 1.8 2 0 0 2 2 2 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|294495425|ref|YP_003541918.1| - 9.6e-36 122.1 1.2 2.3e-35 120.9 0.1 2.3 2 0 0 2 2 2 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|294495425|ref|YP_003541918.1| - 7.5e-13 48.3 2.6 6.5e-06 25.9 0.1 3.2 3 0 0 3 3 3 2 PLD-like domain Toxin_51 PF15531.1 gi|294495425|ref|YP_003541918.1| - 0.13 12.0 0.0 0.42 10.4 0.0 1.8 2 0 0 2 2 2 0 Putative toxin 51 CHAD PF05235.9 gi|294495426|ref|YP_003541919.1| - 3.3e-45 154.4 0.0 4.3e-45 154.1 0.0 1.1 1 0 0 1 1 1 1 CHAD domain Mem_trans PF03547.13 gi|294495426|ref|YP_003541919.1| - 2.3 6.4 13.7 0.21 9.8 3.1 2.1 1 1 1 2 2 2 0 Membrane transport protein PhoU PF01895.14 gi|294495428|ref|YP_003541921.1| - 4.2e-25 87.9 8.3 1.4e-18 67.0 2.2 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|294495428|ref|YP_003541921.1| - 5.8e-07 29.0 0.0 1.4e-06 27.8 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF86 PF01934.12 gi|294495428|ref|YP_003541921.1| - 0.065 12.8 0.7 0.59 9.7 0.0 2.6 2 1 1 3 3 3 0 Protein of unknown function DUF86 T2SF PF00482.18 gi|294495428|ref|YP_003541921.1| - 0.079 12.8 0.2 0.61 9.9 0.0 2.1 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F Proteasome PF00227.21 gi|294495429|ref|YP_003541922.1| - 3.7e-54 182.9 1.1 4.2e-54 182.7 0.7 1.0 1 0 0 1 1 1 1 Proteasome subunit Beta-Casp PF10996.3 gi|294495430|ref|YP_003541923.1| - 1.6e-34 118.5 0.0 7.7e-34 116.3 0.0 2.2 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.22 gi|294495430|ref|YP_003541923.1| - 1.6e-22 80.1 0.7 2.7e-22 79.3 0.5 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|294495430|ref|YP_003541923.1| - 8.3e-11 41.5 0.1 6e-10 38.7 0.0 2.5 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|294495430|ref|YP_003541923.1| - 2e-09 37.2 0.2 6.8e-09 35.5 0.2 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|294495430|ref|YP_003541923.1| - 6.7e-06 25.5 3.0 6.2e-05 22.4 0.1 3.5 3 1 0 3 3 3 1 KH domain Lactamase_B_3 PF13483.1 gi|294495430|ref|YP_003541923.1| - 3.6e-05 23.5 0.0 8.1e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.24 gi|294495430|ref|YP_003541923.1| - 0.0001 21.8 1.3 0.00087 18.8 0.5 2.7 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|294495430|ref|YP_003541923.1| - 0.00075 19.0 0.1 0.0024 17.4 0.0 1.9 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|294495430|ref|YP_003541923.1| - 0.012 15.3 0.2 0.067 12.8 0.2 2.4 1 0 0 1 1 1 0 KH domain HAD_2 PF13419.1 gi|294495431|ref|YP_003541924.1| - 9.6e-23 81.2 0.0 1.1e-22 81.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|294495431|ref|YP_003541924.1| - 2.8e-07 30.1 0.0 5.8e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|294495431|ref|YP_003541924.1| - 2.5e-06 28.0 0.3 1.6e-05 25.4 0.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|294495431|ref|YP_003541924.1| - 0.0044 17.2 0.0 0.0054 16.9 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NT5C PF06941.7 gi|294495431|ref|YP_003541924.1| - 0.082 12.4 0.1 0.14 11.6 0.1 1.4 1 0 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) HTH_34 PF13601.1 gi|294495433|ref|YP_003541926.1| - 0.0043 17.0 0.0 0.0068 16.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|294495433|ref|YP_003541926.1| - 0.068 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|294495433|ref|YP_003541926.1| - 0.084 12.5 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB P-II PF00543.17 gi|294495434|ref|YP_003541927.1| - 8.1e-05 23.0 0.3 9.3e-05 22.8 0.2 1.1 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Kinetocho_Slk19 PF12709.2 gi|294495434|ref|YP_003541927.1| - 0.078 13.0 0.4 0.11 12.6 0.2 1.3 1 1 0 1 1 1 0 Central kinetochore-associated UPF0029 PF01205.14 gi|294495435|ref|YP_003541928.1| - 4.7e-37 126.0 0.0 8e-37 125.2 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|294495435|ref|YP_003541928.1| - 2.2e-10 39.9 0.4 4.5e-10 38.9 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) MatE PF01554.13 gi|294495436|ref|YP_003541929.1| - 4.7e-50 169.3 45.2 1.4e-26 93.0 11.4 2.8 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|294495436|ref|YP_003541929.1| - 2.3e-09 37.2 28.9 3e-07 30.3 12.5 5.3 3 2 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain DUF1352 PF07086.7 gi|294495436|ref|YP_003541929.1| - 0.031 13.8 2.4 0.069 12.7 1.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1352) Aldo_ket_red PF00248.16 gi|294495437|ref|YP_003541930.1| - 1.4e-44 152.0 0.0 1.8e-44 151.7 0.0 1.2 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|294495437|ref|YP_003541930.1| - 2.4e-11 43.7 8.3 5.7e-11 42.6 5.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294495437|ref|YP_003541930.1| - 1.8e-10 40.8 7.8 3.5e-10 39.9 5.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294495437|ref|YP_003541930.1| - 1.3e-09 38.3 4.4 1.1e-06 28.9 0.4 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294495437|ref|YP_003541930.1| - 9.1e-09 35.2 6.5 1.9e-08 34.1 4.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294495437|ref|YP_003541930.1| - 1.2e-06 28.2 7.0 2.5e-06 27.1 4.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294495437|ref|YP_003541930.1| - 0.00032 21.0 8.2 0.00081 19.7 5.7 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|294495437|ref|YP_003541930.1| - 0.00039 19.8 10.9 0.00064 19.2 2.1 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_20 PF14691.1 gi|294495437|ref|YP_003541930.1| - 0.0079 15.8 1.5 0.0079 15.8 1.1 2.2 1 1 1 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|294495437|ref|YP_003541930.1| - 0.0085 16.8 7.7 0.076 13.7 1.3 2.7 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|294495437|ref|YP_003541930.1| - 0.015 15.1 9.2 0.25 11.2 0.7 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294495437|ref|YP_003541930.1| - 0.054 13.8 15.1 0.13 12.6 3.2 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|294495437|ref|YP_003541930.1| - 0.59 10.1 16.6 0.32 11.0 2.3 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|294495437|ref|YP_003541930.1| - 5.7 7.5 9.4 0.56 10.8 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|294495437|ref|YP_003541930.1| - 7.1 6.6 14.3 0.15 11.9 2.2 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain HTH_45 PF14947.1 gi|294495438|ref|YP_003541931.1| - 3e-25 87.8 1.3 3.3e-25 87.6 0.9 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix MotA_activ PF09114.5 gi|294495438|ref|YP_003541931.1| - 0.0029 17.3 0.1 0.0035 17.0 0.1 1.1 1 0 0 1 1 1 1 Transcription factor MotA, activation domain DUF2250 PF10007.4 gi|294495438|ref|YP_003541931.1| - 0.01 15.7 0.1 0.012 15.5 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF1803 PF08820.5 gi|294495438|ref|YP_003541931.1| - 0.023 14.4 0.1 0.038 13.6 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1803) TrmB PF01978.14 gi|294495438|ref|YP_003541931.1| - 0.025 14.2 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Ftsk_gamma PF09397.5 gi|294495438|ref|YP_003541931.1| - 0.035 13.8 0.1 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 Ftsk gamma domain DUF3116 PF11313.3 gi|294495438|ref|YP_003541931.1| - 0.065 12.8 0.3 5.4 6.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3116) Lysine_decarbox PF03641.9 gi|294495438|ref|YP_003541931.1| - 0.1 12.4 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Possible lysine decarboxylase DUF1699 PF08004.6 gi|294495439|ref|YP_003541932.1| - 4.2e-27 94.2 0.1 4.4e-27 94.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) GDE_C PF06202.9 gi|294495440|ref|YP_003541933.1| - 2e-138 461.1 0.0 2.7e-138 460.7 0.0 1.1 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.3 gi|294495440|ref|YP_003541933.1| - 3.2e-73 245.6 0.2 4.5e-73 245.1 0.2 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal DUF608 PF04685.8 gi|294495440|ref|YP_003541933.1| - 8.9e-08 31.2 3.4 9.3e-08 31.1 0.1 2.5 3 0 0 3 3 3 1 Protein of unknown function, DUF608 Glyco_hydro_100 PF12899.2 gi|294495440|ref|YP_003541933.1| - 0.00046 18.6 0.3 0.19 10.1 0.0 2.4 2 1 0 2 2 2 2 Alkaline and neutral invertase Bac_rhamnosid PF05592.6 gi|294495440|ref|YP_003541933.1| - 0.00064 18.0 0.1 0.00085 17.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase Glyco_hydro_15 PF00723.16 gi|294495441|ref|YP_003541934.1| - 1.5e-11 43.5 0.0 1.2e-05 24.0 0.2 3.5 1 1 2 3 3 3 3 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|294495441|ref|YP_003541934.1| - 0.00026 19.8 0.1 0.00045 19.0 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF608 Prenyltrans_2 PF13249.1 gi|294495441|ref|YP_003541934.1| - 0.02 15.3 0.0 2.7 8.4 0.0 3.0 2 1 1 3 3 3 0 Prenyltransferase-like Glyco_hydro_57 PF03065.10 gi|294495442|ref|YP_003541935.1| - 4.4e-66 223.2 0.4 4.1e-65 220.0 0.0 2.3 2 1 0 2 2 2 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|294495442|ref|YP_003541935.1| - 0.019 14.5 0.0 0.034 13.7 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide deacetylase Glyco_hydro_57 PF03065.10 gi|294495443|ref|YP_003541936.1| - 5.6e-35 120.9 0.0 1.2e-33 116.5 0.0 2.0 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 RUN PF02759.14 gi|294495443|ref|YP_003541936.1| - 0.063 13.0 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 RUN domain Glycos_transf_1 PF00534.15 gi|294495444|ref|YP_003541937.1| - 1.5e-26 92.8 0.0 3.6e-26 91.5 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|294495444|ref|YP_003541937.1| - 2.6e-17 63.4 0.0 4.1e-17 62.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.6 gi|294495444|ref|YP_003541937.1| - 3.3e-17 62.7 0.8 1.4e-15 57.4 0.6 2.3 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_transf_4 PF13439.1 gi|294495444|ref|YP_003541937.1| - 2.2e-14 53.5 0.1 5.3e-14 52.3 0.1 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|294495444|ref|YP_003541937.1| - 1.6e-11 44.4 0.0 3.2e-11 43.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|294495444|ref|YP_003541937.1| - 1.9e-08 34.2 0.0 3.9e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|294495444|ref|YP_003541937.1| - 0.0062 16.7 0.0 0.011 15.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 GalP_UDP_transf PF01087.17 gi|294495445|ref|YP_003541938.1| - 1.8e-16 60.7 0.0 1.1e-15 58.1 0.0 2.1 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain DcpS_C PF11969.3 gi|294495445|ref|YP_003541938.1| - 5.4e-07 29.8 0.1 6.4e-05 23.1 0.0 2.4 2 0 0 2 2 2 2 Scavenger mRNA decapping enzyme C-term binding HIT PF01230.18 gi|294495445|ref|YP_003541938.1| - 1.6e-05 25.3 0.1 0.036 14.6 0.0 2.3 2 0 0 2 2 2 2 HIT domain GalP_UDP_tr_C PF02744.12 gi|294495445|ref|YP_003541938.1| - 0.0011 18.4 0.0 0.002 17.6 0.0 1.4 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain Glycogen_syn PF05693.8 gi|294495446|ref|YP_003541939.1| - 1.8e-15 56.2 0.0 2.4e-08 32.7 0.0 2.4 2 1 0 2 2 2 2 Glycogen synthase Glycos_transf_1 PF00534.15 gi|294495446|ref|YP_003541939.1| - 0.00078 18.9 0.1 0.0035 16.7 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 DUF2582 PF10771.4 gi|294495447|ref|YP_003541940.1| - 0.067 13.0 0.3 0.089 12.6 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2582) DUF4218 PF13960.1 gi|294495447|ref|YP_003541940.1| - 0.14 11.6 0.1 0.17 11.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4218) RIO1 PF01163.17 gi|294495448|ref|YP_003541941.1| - 0.014 14.7 0.0 5.1 6.4 0.0 2.2 1 1 1 2 2 2 0 RIO1 family L_protein_N PF15518.1 gi|294495448|ref|YP_003541941.1| - 0.035 13.4 0.0 0.072 12.4 0.0 1.4 1 0 0 1 1 1 0 L protein N-terminus HAD_2 PF13419.1 gi|294495449|ref|YP_003541942.1| - 7.2e-26 91.4 0.0 9.5e-26 91.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|294495449|ref|YP_003541942.1| - 3.1e-07 31.0 0.0 8.1e-07 29.6 0.0 1.6 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|294495449|ref|YP_003541942.1| - 5.3e-06 26.0 0.0 9.9e-06 25.1 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like B-block_TFIIIC PF04182.7 gi|294495450|ref|YP_003541943.1| - 0.001 18.9 0.0 0.0014 18.4 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.17 gi|294495450|ref|YP_003541943.1| - 0.023 14.3 0.0 0.057 13.1 0.0 1.6 2 0 0 2 2 2 0 MarR family TrmB PF01978.14 gi|294495450|ref|YP_003541943.1| - 0.085 12.5 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB LSM PF01423.17 gi|294495451|ref|YP_003541944.1| - 4.7e-18 64.4 0.4 5.4e-18 64.3 0.3 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|294495451|ref|YP_003541944.1| - 0.1 12.5 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain DUF3467 PF11950.3 gi|294495452|ref|YP_003541945.1| - 8.2e-14 51.3 0.0 1.1e-13 51.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) DEAD PF00270.24 gi|294495453|ref|YP_003541946.1| - 1.5e-27 96.1 0.0 3.9e-27 94.8 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|294495453|ref|YP_003541946.1| - 7.9e-13 48.0 0.0 2.3e-12 46.5 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|294495453|ref|YP_003541946.1| - 1.9e-07 31.1 0.0 4.6e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|294495453|ref|YP_003541946.1| - 0.0019 17.0 0.0 0.0029 16.4 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain KaiC PF06745.8 gi|294495454|ref|YP_003541947.1| - 0.00014 21.0 0.0 0.00021 20.4 0.0 1.3 1 0 0 1 1 1 1 KaiC PNP_UDP_1 PF01048.15 gi|294495455|ref|YP_003541948.1| - 3e-39 134.3 0.0 3.4e-39 134.2 0.0 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily DUF373 PF04123.8 gi|294495456|ref|YP_003541949.1| - 4.3e-121 404.1 2.4 4.9e-121 403.9 1.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) MAF_flag10 PF01973.13 gi|294495457|ref|YP_003541950.1| - 2.8e-33 114.7 0.1 3.4e-33 114.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|294495457|ref|YP_003541950.1| - 5.1e-05 22.8 0.1 0.0062 16.1 0.0 2.2 2 0 0 2 2 2 2 Thiamin pyrophosphokinase, catalytic domain DUF2100 PF09873.4 gi|294495457|ref|YP_003541950.1| - 0.12 11.8 0.8 0.45 9.9 0.2 2.1 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2100) tRNA-synt_1 PF00133.17 gi|294495458|ref|YP_003541951.1| - 6.5e-213 708.0 5.6 8.7e-213 707.6 3.9 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|294495458|ref|YP_003541951.1| - 2e-35 121.8 0.7 4.5e-35 120.6 0.5 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|294495458|ref|YP_003541951.1| - 1.2e-27 96.5 7.4 1e-12 47.4 0.4 4.3 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|294495458|ref|YP_003541951.1| - 6.7e-07 28.7 0.0 1.9e-06 27.2 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|294495458|ref|YP_003541951.1| - 0.00032 19.4 1.2 0.001 17.8 0.0 2.3 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.1 gi|294495458|ref|YP_003541951.1| - 0.00033 20.0 0.2 0.00084 18.6 0.1 1.7 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 Thioredoxin PF00085.15 gi|294495458|ref|YP_003541951.1| - 0.053 13.2 0.9 8.8 6.0 0.0 3.1 3 0 0 3 3 3 0 Thioredoxin PUA PF01472.15 gi|294495459|ref|YP_003541952.1| - 8.9e-18 63.7 1.6 1.4e-17 63.1 1.1 1.3 1 0 0 1 1 1 1 PUA domain DUF552 PF04472.7 gi|294495460|ref|YP_003541953.1| - 3.7e-17 61.9 1.1 5.3e-17 61.4 0.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF552) Transposase_31 PF04754.7 gi|294495460|ref|YP_003541953.1| - 0.12 11.6 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Putative transposase, YhgA-like zf-ZPR1 PF03367.8 gi|294495461|ref|YP_003541954.1| - 2.9e-43 146.8 0.3 3.8e-43 146.4 0.2 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain YdjO PF14169.1 gi|294495461|ref|YP_003541954.1| - 0.083 12.3 0.1 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Cold-inducible protein YdjO HGTP_anticodon PF03129.15 gi|294495462|ref|YP_003541955.1| - 3e-21 75.1 0.0 6.1e-21 74.1 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|294495462|ref|YP_003541955.1| - 2.3e-20 72.8 0.3 1.8e-19 69.9 0.2 2.1 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.6 gi|294495462|ref|YP_003541955.1| - 4e-15 55.4 0.5 8.1e-15 54.4 0.3 1.5 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal SBP_bac_5 PF00496.17 gi|294495462|ref|YP_003541955.1| - 0.067 12.0 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle DBI_PRT PF02277.12 gi|294495463|ref|YP_003541956.1| - 1.1e-23 83.8 2.0 1.6e-23 83.3 1.4 1.2 1 0 0 1 1 1 1 Phosphoribosyltransferase Ribosomal_L15e PF00827.12 gi|294495464|ref|YP_003541957.1| - 1.4e-83 279.1 11.1 1.6e-83 278.9 7.7 1.0 1 0 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.12 gi|294495465|ref|YP_003541958.1| - 4.2e-28 97.7 0.3 6e-28 97.2 0.2 1.2 1 0 0 1 1 1 1 RNA binding DUF615 PF04751.9 gi|294495465|ref|YP_003541958.1| - 0.016 14.8 1.7 0.016 14.8 1.2 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF615) RPAP1_N PF08621.5 gi|294495465|ref|YP_003541958.1| - 0.15 11.6 2.0 0.26 10.9 1.4 1.4 1 0 0 1 1 1 0 RPAP1-like, N-terminal DUF4254 PF14063.1 gi|294495465|ref|YP_003541958.1| - 0.19 11.3 1.7 5 6.7 0.0 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF4254) RNase_P_p30 PF01876.11 gi|294495466|ref|YP_003541959.1| - 7.8e-37 125.8 0.0 9.9e-37 125.4 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 PHP PF02811.14 gi|294495466|ref|YP_003541959.1| - 0.0073 16.1 0.0 0.01 15.6 0.0 1.3 1 1 0 1 1 1 1 PHP domain RNase_P_Rpp14 PF01900.14 gi|294495467|ref|YP_003541960.1| - 2.5e-20 72.3 0.0 2.9e-20 72.1 0.0 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.21 gi|294495468|ref|YP_003541961.1| - 7.3e-62 208.0 0.5 7.3e-62 208.0 0.3 1.4 2 0 0 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|294495468|ref|YP_003541961.1| - 9.8e-15 53.5 0.4 3.2e-14 51.9 0.1 2.0 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature SBDS PF01172.13 gi|294495469|ref|YP_003541962.1| - 6.4e-26 89.9 0.1 1e-25 89.3 0.1 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|294495469|ref|YP_003541962.1| - 4.2e-24 84.6 0.0 5.5e-24 84.2 0.0 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain KH_1 PF00013.24 gi|294495470|ref|YP_003541963.1| - 1.1e-08 34.5 0.4 2.4e-08 33.4 0.3 1.6 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.1 gi|294495470|ref|YP_003541963.1| - 7.7e-07 28.2 0.0 1.3e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_2 PF07650.12 gi|294495470|ref|YP_003541963.1| - 5.5e-05 22.6 0.2 0.00013 21.4 0.1 1.7 1 1 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|294495470|ref|YP_003541963.1| - 7.7e-05 22.2 0.2 0.00015 21.3 0.1 1.6 1 0 0 1 1 1 1 KH domain S1 PF00575.18 gi|294495470|ref|YP_003541963.1| - 0.094 12.8 0.0 0.29 11.2 0.0 2.0 2 1 0 2 2 2 0 S1 RNA binding domain RNase_PH PF01138.16 gi|294495471|ref|YP_003541964.1| - 8.3e-33 113.5 0.0 1.3e-32 112.8 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|294495471|ref|YP_003541964.1| - 1.8e-18 66.2 0.2 3.3e-18 65.3 0.1 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|294495472|ref|YP_003541965.1| - 6.7e-30 104.0 0.1 1.3e-29 103.1 0.0 1.5 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|294495472|ref|YP_003541965.1| - 8.1e-13 48.1 0.2 1.5e-12 47.2 0.1 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.14 gi|294495473|ref|YP_003541966.1| - 5.4e-31 106.3 6.2 6e-31 106.1 4.3 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family C1_1 PF00130.17 gi|294495473|ref|YP_003541966.1| - 0.015 15.0 1.0 0.022 14.5 0.7 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.2 gi|294495473|ref|YP_003541966.1| - 0.019 14.7 3.3 0.028 14.2 2.3 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF4379 PF14311.1 gi|294495473|ref|YP_003541966.1| - 0.037 13.8 2.2 0.22 11.3 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) Rep_fac-A_C PF08646.5 gi|294495473|ref|YP_003541966.1| - 0.043 13.5 0.1 0.054 13.1 0.1 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain Zn-ribbon_8 PF09723.5 gi|294495473|ref|YP_003541966.1| - 0.11 12.5 2.8 3.3 7.7 0.3 2.3 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|294495473|ref|YP_003541966.1| - 0.11 12.1 2.4 0.18 11.4 1.6 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.1 gi|294495473|ref|YP_003541966.1| - 1.1 9.7 6.1 11 6.4 0.2 2.4 1 1 1 2 2 2 0 Zinc-finger double domain DNA_RNApol_7kD PF03604.8 gi|294495474|ref|YP_003541967.1| - 7.8e-07 28.4 8.0 1e-06 28.0 5.6 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|294495474|ref|YP_003541967.1| - 0.00013 21.3 7.7 0.0075 15.7 1.6 1.9 1 1 1 2 2 2 2 zinc-ribbon domain HypA PF01155.14 gi|294495474|ref|YP_003541967.1| - 0.00048 19.7 0.2 0.00049 19.7 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|294495474|ref|YP_003541967.1| - 0.00072 18.6 0.3 0.051 12.7 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|294495474|ref|YP_003541967.1| - 0.0011 18.1 1.7 0.0014 17.8 1.2 1.1 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|294495474|ref|YP_003541967.1| - 0.0026 17.7 4.1 0.0059 16.6 0.3 2.0 1 1 1 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-RING_3 PF14369.1 gi|294495474|ref|YP_003541967.1| - 0.0072 16.2 0.9 0.011 15.7 0.6 1.2 1 0 0 1 1 1 1 zinc-finger Cys_rich_CPXG PF14255.1 gi|294495474|ref|YP_003541967.1| - 0.01 15.6 0.7 0.097 12.5 0.1 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG OrfB_Zn_ribbon PF07282.6 gi|294495474|ref|YP_003541967.1| - 0.012 15.2 2.1 0.019 14.6 1.4 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|294495474|ref|YP_003541967.1| - 0.014 15.2 3.2 0.37 10.6 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF951 PF06107.6 gi|294495474|ref|YP_003541967.1| - 0.018 14.5 1.5 2.8 7.5 0.1 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zinc_ribbon_5 PF13719.1 gi|294495474|ref|YP_003541967.1| - 0.024 14.2 1.3 2.3 7.8 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|294495474|ref|YP_003541967.1| - 0.043 13.3 0.7 0.44 10.1 0.4 1.9 1 1 0 1 1 1 0 Ribosomal protein S27 CpXC PF14353.1 gi|294495474|ref|YP_003541967.1| - 0.048 13.6 1.7 2 8.4 0.0 2.0 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_6 PF14599.1 gi|294495474|ref|YP_003541967.1| - 0.053 13.3 1.0 0.062 13.1 0.7 1.1 1 0 0 1 1 1 0 Zinc-ribbon Cys_rich_KTR PF14205.1 gi|294495474|ref|YP_003541967.1| - 0.055 12.9 4.0 0.089 12.2 0.4 2.0 1 1 1 2 2 2 0 Cysteine-rich KTR DUF2072 PF09845.4 gi|294495474|ref|YP_003541967.1| - 0.056 13.3 0.5 0.056 13.3 0.3 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) Prok-RING_1 PF14446.1 gi|294495474|ref|YP_003541967.1| - 0.067 12.9 1.4 1.2 8.9 0.0 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 TFIIS_C PF01096.13 gi|294495474|ref|YP_003541967.1| - 0.071 12.7 1.9 5 6.8 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_4 PF13717.1 gi|294495474|ref|YP_003541967.1| - 0.075 12.7 3.2 3.1 7.5 2.2 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|294495474|ref|YP_003541967.1| - 0.078 12.8 1.0 0.16 11.7 0.7 1.5 1 1 0 1 1 1 0 Double zinc ribbon DUF329 PF03884.9 gi|294495474|ref|YP_003541967.1| - 0.085 12.4 1.7 2.4 7.8 1.6 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF329) IBR PF01485.16 gi|294495474|ref|YP_003541967.1| - 0.088 12.6 0.6 0.095 12.5 0.4 1.2 1 0 0 1 1 1 0 IBR domain zf-CHCC PF10276.4 gi|294495474|ref|YP_003541967.1| - 0.097 12.5 0.5 0.15 11.9 0.3 1.4 1 0 0 1 1 1 0 Zinc-finger domain DUF2752 PF10825.3 gi|294495474|ref|YP_003541967.1| - 0.099 12.6 0.1 0.15 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2752) NOB1_Zn_bind PF08772.6 gi|294495474|ref|YP_003541967.1| - 0.12 12.2 0.4 0.14 11.9 0.3 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.5 gi|294495474|ref|YP_003541967.1| - 0.22 11.5 5.2 0.75 9.7 3.6 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|294495474|ref|YP_003541967.1| - 0.22 11.2 4.0 4.9 6.8 0.2 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Sgf11 PF08209.6 gi|294495474|ref|YP_003541967.1| - 0.22 10.8 2.4 4.7 6.6 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Desulfoferrod_N PF06397.7 gi|294495474|ref|YP_003541967.1| - 0.24 10.8 4.5 5.2 6.5 0.2 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-AN1 PF01428.11 gi|294495474|ref|YP_003541967.1| - 0.24 11.3 1.9 0.78 9.6 1.4 1.7 1 1 0 1 1 1 0 AN1-like Zinc finger C1_1 PF00130.17 gi|294495474|ref|YP_003541967.1| - 0.24 11.1 1.1 0.63 9.8 0.9 1.6 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_4 PF13894.1 gi|294495474|ref|YP_003541967.1| - 0.25 11.7 1.0 8.1 7.0 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2HC_2 PF13913.1 gi|294495474|ref|YP_003541967.1| - 0.31 10.7 3.3 2.6 7.8 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Mu-like_Com PF10122.4 gi|294495474|ref|YP_003541967.1| - 0.31 10.1 5.6 2.7 7.1 3.9 2.0 1 1 0 1 1 1 0 Mu-like prophage protein Com zf-C2H2 PF00096.21 gi|294495474|ref|YP_003541967.1| - 0.45 10.9 2.5 10 6.6 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-BED PF02892.10 gi|294495474|ref|YP_003541967.1| - 0.61 9.8 2.8 0.94 9.2 1.9 1.5 1 1 0 1 1 1 0 BED zinc finger DUF3797 PF12677.2 gi|294495474|ref|YP_003541967.1| - 1.1 8.9 3.7 0.84 9.3 1.1 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Brix PF04427.13 gi|294495475|ref|YP_003541968.1| - 1e-06 28.5 0.0 2.2e-06 27.4 0.0 1.7 1 1 1 2 2 2 1 Brix domain Pcc1 PF09341.5 gi|294495476|ref|YP_003541969.1| - 1e-12 47.8 0.3 1.2e-12 47.6 0.2 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DUF111 PF01969.12 gi|294495478|ref|YP_003541971.1| - 5.2e-128 427.0 0.1 6e-128 426.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 AIRC PF00731.15 gi|294495479|ref|YP_003541972.1| - 9.6e-21 73.6 3.6 1.3e-20 73.1 1.7 1.7 2 0 0 2 2 2 1 AIR carboxylase YopH_N PF09013.5 gi|294495479|ref|YP_003541972.1| - 0.2 11.3 1.0 2.1 8.0 0.1 2.6 3 0 0 3 3 3 0 YopH, N-terminal Hexapep PF00132.19 gi|294495480|ref|YP_003541973.1| - 6e-19 66.6 12.0 1e-06 27.9 0.0 4.2 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|294495480|ref|YP_003541973.1| - 5.3e-06 25.8 11.7 0.0043 16.5 1.7 3.4 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.7 gi|294495480|ref|YP_003541973.1| - 0.046 12.2 2.3 1.9 6.9 0.3 2.1 1 1 1 2 2 2 0 L-fucokinase Thioredoxin_3 PF13192.1 gi|294495481|ref|YP_003541974.1| - 3.4e-27 94.0 3.1 3.7e-27 93.9 2.1 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|294495481|ref|YP_003541974.1| - 0.0052 16.7 0.2 0.0074 16.2 0.1 1.3 1 0 0 1 1 1 1 Glutaredoxin DUF1525 PF07511.6 gi|294495481|ref|YP_003541974.1| - 0.032 14.2 0.1 0.034 14.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1525) zinc_ribbon_5 PF13719.1 gi|294495481|ref|YP_003541974.1| - 0.032 13.8 0.1 0.057 13.0 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain ArsD PF06953.6 gi|294495481|ref|YP_003541974.1| - 0.037 14.2 0.0 0.045 13.9 0.0 1.3 1 1 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD Thioredoxin_4 PF13462.1 gi|294495481|ref|YP_003541974.1| - 0.054 13.4 0.9 0.32 10.9 0.1 1.8 1 1 1 2 2 2 0 Thioredoxin zinc_ribbon_4 PF13717.1 gi|294495481|ref|YP_003541974.1| - 0.11 12.1 0.2 0.21 11.2 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Metallophos_2 PF12850.2 gi|294495482|ref|YP_003541975.1| - 2.9e-32 111.6 0.0 3.6e-32 111.3 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|294495482|ref|YP_003541975.1| - 3.4e-15 55.9 0.1 5.4e-15 55.3 0.1 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|294495482|ref|YP_003541975.1| - 0.0083 15.3 0.0 0.39 9.8 0.0 2.2 2 0 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily FBPase_2 PF06874.6 gi|294495482|ref|YP_003541975.1| - 0.053 11.5 0.1 0.11 10.5 0.0 1.5 1 1 1 2 2 2 0 Firmicute fructose-1,6-bisphosphatase Peptidase_C8 PF03569.8 gi|294495482|ref|YP_003541975.1| - 0.1 11.9 0.0 0.37 10.0 0.0 1.8 2 0 0 2 2 2 0 Peptidase family C8 DUF318 PF03773.8 gi|294495483|ref|YP_003541976.1| - 4.1e-84 282.1 28.4 4.8e-84 281.9 19.7 1.0 1 0 0 1 1 1 1 Predicted permease Peptidase_U32 PF01136.14 gi|294495484|ref|YP_003541977.1| - 9.5e-92 306.1 0.0 6.5e-71 237.9 0.0 2.4 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|294495484|ref|YP_003541977.1| - 1.9e-24 86.0 1.1 2.9e-24 85.4 0.1 1.9 2 0 0 2 2 2 1 Collagenase PEP_mutase PF13714.1 gi|294495484|ref|YP_003541977.1| - 0.11 11.6 0.0 17 4.5 0.0 3.1 3 0 0 3 3 3 0 Phosphoenolpyruvate phosphomutase Cas_VVA1548 PF09652.5 gi|294495484|ref|YP_003541977.1| - 0.13 12.3 0.0 0.5 10.4 0.0 2.0 1 0 0 1 1 1 0 Putative CRISPR-associated protein (Cas_VVA1548) NAPRTase PF04095.11 gi|294495486|ref|YP_003541979.1| - 8.6e-55 185.6 0.0 1.1e-54 185.2 0.0 1.1 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family HTH_20 PF12840.2 gi|294495487|ref|YP_003541980.1| - 1.1e-12 47.4 0.2 1.6e-12 46.9 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|294495487|ref|YP_003541980.1| - 7e-11 41.6 0.1 1.1e-10 40.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|294495487|ref|YP_003541980.1| - 2e-05 24.1 0.4 4.3e-05 23.0 0.1 1.7 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|294495487|ref|YP_003541980.1| - 8.1e-05 22.2 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|294495487|ref|YP_003541980.1| - 0.00015 21.4 0.1 0.00032 20.3 0.1 1.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|294495487|ref|YP_003541980.1| - 0.00033 20.6 0.1 0.0005 20.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|294495487|ref|YP_003541980.1| - 0.0037 16.8 0.1 0.0056 16.2 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|294495487|ref|YP_003541980.1| - 0.0038 16.8 0.1 0.0048 16.5 0.1 1.2 1 0 0 1 1 1 1 MarR family HxlR PF01638.12 gi|294495487|ref|YP_003541980.1| - 0.0053 16.3 0.1 0.0068 16.0 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.17 gi|294495487|ref|YP_003541980.1| - 0.013 15.1 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|294495487|ref|YP_003541980.1| - 0.015 15.3 0.0 0.022 14.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.1 gi|294495487|ref|YP_003541980.1| - 0.017 14.5 0.1 0.029 13.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Mga PF05043.8 gi|294495487|ref|YP_003541980.1| - 0.017 15.3 0.1 0.05 13.8 0.0 1.7 1 1 1 2 2 2 0 Mga helix-turn-helix domain GntR PF00392.16 gi|294495487|ref|YP_003541980.1| - 0.022 14.2 0.1 0.046 13.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_28 PF13518.1 gi|294495487|ref|YP_003541980.1| - 0.024 14.6 0.1 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|294495487|ref|YP_003541980.1| - 0.028 13.9 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_29 PF13551.1 gi|294495487|ref|YP_003541980.1| - 0.046 13.8 0.1 0.061 13.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix DegQ PF08181.6 gi|294495488|ref|YP_003541981.1| - 0.027 14.1 1.0 0.034 13.8 0.7 1.2 1 0 0 1 1 1 0 DegQ (SacQ) family DUF2031 PF09592.5 gi|294495488|ref|YP_003541981.1| - 0.049 12.7 0.1 0.049 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2031) EphA2_TM PF14575.1 gi|294495488|ref|YP_003541981.1| - 0.063 13.6 0.0 0.071 13.5 0.0 1.1 1 0 0 1 1 1 0 Ephrin type-A receptor 2 transmembrane domain ODV-E18 PF10717.4 gi|294495488|ref|YP_003541981.1| - 0.094 12.1 0.2 0.11 11.9 0.1 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 DUF4330 PF14221.1 gi|294495488|ref|YP_003541981.1| - 0.1 12.4 0.0 0.11 12.3 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) DUF4446 PF14584.1 gi|294495488|ref|YP_003541981.1| - 0.1 12.3 0.2 0.14 11.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF4381 PF14316.1 gi|294495488|ref|YP_003541981.1| - 0.12 12.4 0.1 0.13 12.3 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) HN PF00423.14 gi|294495488|ref|YP_003541981.1| - 0.14 10.4 0.1 0.14 10.4 0.1 1.0 1 0 0 1 1 1 0 Haemagglutinin-neuraminidase IncA PF04156.9 gi|294495488|ref|YP_003541981.1| - 0.37 10.3 4.5 0.58 9.7 3.1 1.3 1 1 0 1 1 1 0 IncA protein DUF4083 PF13314.1 gi|294495488|ref|YP_003541981.1| - 2.6 7.9 5.9 13 5.7 0.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4083) Tropomyosin PF00261.15 gi|294495489|ref|YP_003541982.1| - 0.0051 15.9 2.1 0.0058 15.7 1.4 1.0 1 0 0 1 1 1 1 Tropomyosin NYD-SP28 PF14772.1 gi|294495489|ref|YP_003541982.1| - 0.012 15.7 1.8 0.014 15.4 1.3 1.1 1 0 0 1 1 1 0 Sperm tail Vps5 PF09325.5 gi|294495489|ref|YP_003541982.1| - 0.017 14.3 1.4 0.019 14.1 1.0 1.0 1 0 0 1 1 1 0 Vps5 C terminal like YgaB PF14182.1 gi|294495489|ref|YP_003541982.1| - 0.017 15.3 1.0 0.021 15.0 0.7 1.1 1 0 0 1 1 1 0 YgaB-like protein IncA PF04156.9 gi|294495489|ref|YP_003541982.1| - 0.025 14.1 0.0 0.031 13.8 0.0 1.1 1 0 0 1 1 1 0 IncA protein Bap31 PF05529.7 gi|294495489|ref|YP_003541982.1| - 0.045 13.2 0.0 0.057 12.8 0.0 1.2 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like DUF3007 PF11460.3 gi|294495489|ref|YP_003541982.1| - 0.088 12.8 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) DUF4446 PF14584.1 gi|294495489|ref|YP_003541982.1| - 0.11 12.3 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF169 PF02596.10 gi|294495491|ref|YP_003541984.1| - 1.2e-67 227.4 0.0 1.5e-67 227.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Class_IIIsignal PF04021.7 gi|294495492|ref|YP_003541985.1| - 2.2 8.1 7.1 4.5 7.1 4.9 1.5 1 0 0 1 1 1 0 Class III signal peptide Rhomboid PF01694.17 gi|294495493|ref|YP_003541986.1| - 0.00037 20.5 18.8 0.0019 18.2 7.2 2.6 3 0 0 3 3 3 2 Rhomboid family Yip1 PF04893.12 gi|294495494|ref|YP_003541987.1| - 1e-29 103.2 15.7 1.3e-29 102.9 10.9 1.0 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|294495494|ref|YP_003541987.1| - 5.3e-06 26.2 6.4 7.7e-06 25.6 4.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) Lumazine_bd PF12870.2 gi|294495495|ref|YP_003541988.1| - 0.024 14.6 0.1 0.045 13.8 0.1 1.5 1 1 0 1 1 1 0 Lumazine-binding domain LPAM_1 PF08139.7 gi|294495495|ref|YP_003541988.1| - 0.033 14.4 1.0 0.033 14.4 0.7 1.8 2 0 0 2 2 2 0 Prokaryotic membrane lipoprotein lipid attachment site HATPase_c PF02518.21 gi|294495496|ref|YP_003541989.1| - 4.6e-30 103.5 0.4 1.1e-29 102.3 0.3 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|294495496|ref|YP_003541989.1| - 4.3e-19 68.2 0.8 2.8e-18 65.6 0.4 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|294495496|ref|YP_003541989.1| - 9.5e-07 28.4 0.0 2.8e-06 26.9 0.0 1.8 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|294495496|ref|YP_003541989.1| - 0.00023 20.8 1.5 0.00042 19.9 0.1 2.1 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHASE PF03924.8 gi|294495496|ref|YP_003541989.1| - 0.00059 19.1 0.0 0.0015 17.8 0.0 1.6 2 0 0 2 2 2 1 CHASE domain DUF3278 PF11683.3 gi|294495496|ref|YP_003541989.1| - 0.006 16.5 6.1 0.55 10.2 0.3 2.7 3 0 0 3 3 3 2 Protein of unknown function (DUF3278) Cache_1 PF02743.13 gi|294495496|ref|YP_003541989.1| - 0.01 15.3 0.0 0.023 14.2 0.0 1.5 1 0 0 1 1 1 0 Cache domain MFS_Mycoplasma PF07672.8 gi|294495496|ref|YP_003541989.1| - 0.018 14.2 6.6 0.043 12.9 1.6 2.1 2 0 0 2 2 2 0 Mycoplasma MFS transporter HATPase_c_2 PF13581.1 gi|294495496|ref|YP_003541989.1| - 0.022 14.5 0.0 0.058 13.1 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF3139 PF11337.3 gi|294495496|ref|YP_003541989.1| - 0.036 14.3 1.6 0.61 10.4 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) DUF3793 PF12672.2 gi|294495496|ref|YP_003541989.1| - 0.13 11.8 0.7 0.26 10.8 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3793) Neur_chan_memb PF02932.11 gi|294495496|ref|YP_003541989.1| - 0.76 9.6 4.0 0.64 9.8 0.1 2.0 1 1 1 2 2 2 0 Neurotransmitter-gated ion-channel transmembrane region Response_reg PF00072.19 gi|294495497|ref|YP_003541990.1| - 4.6e-35 120.0 0.4 6e-35 119.6 0.3 1.2 1 0 0 1 1 1 1 Response regulator receiver domain HTH_24 PF13412.1 gi|294495497|ref|YP_003541990.1| - 1.2e-08 34.1 0.2 2.5e-08 33.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|294495497|ref|YP_003541990.1| - 7.3e-08 31.8 0.1 1.5e-07 30.8 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|294495497|ref|YP_003541990.1| - 1.2e-05 24.8 0.4 3.6e-05 23.3 0.2 2.0 1 1 1 2 2 2 1 HTH domain HTH_Mga PF08280.6 gi|294495497|ref|YP_003541990.1| - 2.2e-05 24.1 0.2 0.00011 21.9 0.1 2.0 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_20 PF12840.2 gi|294495497|ref|YP_003541990.1| - 0.0013 18.5 0.0 0.0047 16.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.13 gi|294495497|ref|YP_003541990.1| - 0.0026 17.7 0.5 0.0049 16.8 0.0 1.8 2 0 0 2 2 1 1 Transposase HTH_5 PF01022.15 gi|294495497|ref|YP_003541990.1| - 0.0056 16.3 0.6 0.01 15.5 0.1 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.7 gi|294495497|ref|YP_003541990.1| - 0.012 15.1 0.0 0.022 14.2 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Methyltransf_31 PF13847.1 gi|294495497|ref|YP_003541990.1| - 0.047 13.2 0.1 0.055 13.0 0.1 1.2 1 0 0 1 1 1 0 Methyltransferase domain EAP30 PF04157.11 gi|294495497|ref|YP_003541990.1| - 0.062 12.4 0.1 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family TusA PF01206.12 gi|294495497|ref|YP_003541990.1| - 0.075 12.6 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Sulfurtransferase TusA GerE PF00196.14 gi|294495497|ref|YP_003541990.1| - 0.077 12.3 0.0 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family MarR_2 PF12802.2 gi|294495498|ref|YP_003541991.1| - 4.2e-06 26.3 0.0 6e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|294495498|ref|YP_003541991.1| - 1.6e-05 24.4 0.0 2.2e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|294495498|ref|YP_003541991.1| - 0.00043 19.6 0.0 0.00081 18.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|294495498|ref|YP_003541991.1| - 0.0011 19.0 0.0 0.0016 18.5 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.14 gi|294495498|ref|YP_003541991.1| - 0.0016 18.0 0.0 0.0023 17.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.6 gi|294495498|ref|YP_003541991.1| - 0.002 17.9 0.0 0.0033 17.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_20 PF12840.2 gi|294495498|ref|YP_003541991.1| - 0.0087 15.8 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|294495498|ref|YP_003541991.1| - 0.017 14.7 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 HTH domain FUR PF01475.14 gi|294495498|ref|YP_003541991.1| - 0.021 14.7 0.0 0.023 14.6 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family MarR PF01047.17 gi|294495498|ref|YP_003541991.1| - 0.027 14.1 0.0 0.037 13.7 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF1495 PF07381.6 gi|294495498|ref|YP_003541991.1| - 0.035 13.7 0.0 0.65 9.7 0.0 2.1 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_5 PF01022.15 gi|294495498|ref|YP_003541991.1| - 0.05 13.2 0.1 0.07 12.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Mga PF05043.8 gi|294495498|ref|YP_003541991.1| - 0.057 13.6 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_27 PF13463.1 gi|294495498|ref|YP_003541991.1| - 0.066 13.5 0.0 0.085 13.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4423 PF14394.1 gi|294495498|ref|YP_003541991.1| - 0.084 12.4 0.0 0.1 12.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) RP-C PF03428.8 gi|294495498|ref|YP_003541991.1| - 0.1 12.0 0.0 0.17 11.3 0.0 1.5 1 1 0 1 1 1 0 Replication protein C N-terminal domain Sensor PF13796.1 gi|294495499|ref|YP_003541992.1| - 2.1e-36 125.2 8.5 2.5e-36 124.9 5.9 1.0 1 0 0 1 1 1 1 Putative sensor DUF1700 PF08006.6 gi|294495499|ref|YP_003541992.1| - 4 6.7 17.6 0.067 12.4 4.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) PLDc_N PF13396.1 gi|294495500|ref|YP_003541993.1| - 2.3e-14 52.7 3.0 2.3e-14 52.7 2.1 1.9 1 1 1 2 2 2 1 Phospholipase_D-nuclease N-terminal DUF4184 PF13803.1 gi|294495500|ref|YP_003541993.1| - 0.0031 16.8 0.3 0.0031 16.8 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4184) EBP PF05241.7 gi|294495500|ref|YP_003541993.1| - 0.036 13.0 0.2 0.043 12.8 0.1 1.2 1 0 0 1 1 1 0 Emopamil binding protein Adeno_E3_14_5 PF04834.7 gi|294495500|ref|YP_003541993.1| - 0.067 13.6 0.9 0.08 13.3 0.4 1.3 1 1 0 1 1 1 0 Early E3 14.5 kDa protein PspC PF04024.7 gi|294495500|ref|YP_003541993.1| - 0.069 12.6 0.4 0.069 12.6 0.3 2.1 2 0 0 2 2 2 0 PspC domain Cation_efflux PF01545.16 gi|294495500|ref|YP_003541993.1| - 0.073 12.1 1.0 0.083 11.9 0.7 1.0 1 0 0 1 1 1 0 Cation efflux family Tetraspannin PF00335.15 gi|294495500|ref|YP_003541993.1| - 0.16 11.1 3.0 0.19 10.9 2.1 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF2975 PF11188.3 gi|294495500|ref|YP_003541993.1| - 1.2 8.8 5.6 1.5 8.5 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) Oxidored_q2 PF00420.19 gi|294495500|ref|YP_003541993.1| - 3.1 7.4 7.7 1.7 8.2 1.9 2.0 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABC2_membrane_3 PF12698.2 gi|294495500|ref|YP_003541993.1| - 5 6.0 7.7 6.8 5.6 5.4 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein MacB_PCD PF12704.2 gi|294495501|ref|YP_003541994.1| - 5.6e-42 143.9 2.2 5.6e-42 143.9 1.5 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|294495501|ref|YP_003541994.1| - 2.8e-23 81.9 16.6 1.6e-22 79.5 8.0 2.2 2 0 0 2 2 2 2 FtsX-like permease family YonK PF09642.5 gi|294495501|ref|YP_003541994.1| - 0.026 14.1 2.2 0.69 9.6 0.0 3.2 3 0 0 3 3 3 0 YonK protein CARDB PF07705.6 gi|294495502|ref|YP_003541995.1| - 1.2e-05 25.2 1.4 0.043 13.8 0.0 3.1 3 0 0 3 3 3 2 CARDB DUF11 PF01345.13 gi|294495502|ref|YP_003541995.1| - 0.0054 16.7 0.0 0.79 9.8 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function DUF11 Cadherin-like PF12733.2 gi|294495502|ref|YP_003541995.1| - 0.15 12.3 7.1 9.4 6.6 0.3 3.6 1 1 2 3 3 3 0 Cadherin-like beta sandwich domain ABC_tran PF00005.22 gi|294495503|ref|YP_003541996.1| - 2.9e-32 111.8 0.0 3.9e-32 111.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|294495503|ref|YP_003541996.1| - 1e-14 55.2 0.2 6.7e-09 36.1 0.1 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|294495503|ref|YP_003541996.1| - 1.9e-08 33.8 0.0 2.7e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|294495503|ref|YP_003541996.1| - 4.1e-05 23.0 0.0 0.00011 21.6 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|294495503|ref|YP_003541996.1| - 7.3e-05 22.0 0.0 0.00013 21.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|294495503|ref|YP_003541996.1| - 0.00059 19.9 0.1 0.0036 17.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|294495503|ref|YP_003541996.1| - 0.00078 18.9 0.2 0.0019 17.6 0.1 1.7 2 0 0 2 2 2 1 AAA-like domain AAA_15 PF13175.1 gi|294495503|ref|YP_003541996.1| - 0.00099 18.2 1.1 0.2 10.6 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|294495503|ref|YP_003541996.1| - 0.0021 18.8 0.0 0.0034 18.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|294495503|ref|YP_003541996.1| - 0.0039 17.1 0.0 0.0082 16.1 0.0 1.5 2 0 0 2 2 1 1 AAA ATPase domain MMR_HSR1 PF01926.18 gi|294495503|ref|YP_003541996.1| - 0.0046 16.9 0.0 0.0064 16.4 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|294495503|ref|YP_003541996.1| - 0.0054 16.1 0.0 0.0089 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|294495503|ref|YP_003541996.1| - 0.0085 16.4 0.1 0.021 15.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|294495503|ref|YP_003541996.1| - 0.0092 16.2 0.1 0.034 14.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|294495503|ref|YP_003541996.1| - 0.01 15.7 0.1 0.017 14.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|294495503|ref|YP_003541996.1| - 0.026 13.6 0.1 3.9 6.5 0.0 2.2 2 0 0 2 2 2 0 KaiC AAA_28 PF13521.1 gi|294495503|ref|YP_003541996.1| - 0.029 14.3 0.0 0.042 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|294495503|ref|YP_003541996.1| - 0.033 13.9 0.1 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|294495503|ref|YP_003541996.1| - 0.046 13.4 0.0 0.49 10.0 0.0 2.0 2 0 0 2 2 2 0 Archaeal ATPase AAA_30 PF13604.1 gi|294495503|ref|YP_003541996.1| - 0.063 12.8 0.0 0.22 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|294495503|ref|YP_003541996.1| - 0.069 11.9 0.0 0.37 9.5 0.0 1.9 2 0 0 2 2 2 0 ArgK protein NACHT PF05729.7 gi|294495503|ref|YP_003541996.1| - 0.082 12.5 0.1 0.22 11.1 0.0 1.7 2 0 0 2 2 2 0 NACHT domain IstB_IS21 PF01695.12 gi|294495503|ref|YP_003541996.1| - 0.12 11.7 0.0 0.28 10.5 0.0 1.5 2 0 0 2 2 2 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|294495503|ref|YP_003541996.1| - 0.13 12.4 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Lactamase_B PF00753.22 gi|294495504|ref|YP_003541997.1| - 1.2e-14 54.3 0.0 3.1e-14 53.0 0.0 1.6 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|294495504|ref|YP_003541997.1| - 4.5e-06 26.3 0.2 5.7e-06 26.0 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|294495504|ref|YP_003541997.1| - 0.0032 17.1 0.0 0.0052 16.4 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain ThiC PF01964.13 gi|294495505|ref|YP_003541998.1| - 1.7e-186 619.8 0.8 1.9e-186 619.6 0.6 1.0 1 0 0 1 1 1 1 ThiC family GARS_C PF02843.11 gi|294495505|ref|YP_003541998.1| - 0.052 13.7 1.2 0.11 12.7 0.0 2.1 3 0 0 3 3 3 0 Phosphoribosylglycinamide synthetase, C domain PAS_9 PF13426.1 gi|294495506|ref|YP_003541999.1| - 7.8e-66 218.9 6.4 5e-16 58.9 0.1 5.8 6 0 0 6 6 6 5 PAS domain PAS PF00989.19 gi|294495506|ref|YP_003541999.1| - 8.7e-55 183.3 0.0 7.8e-17 61.0 0.0 5.5 5 0 0 5 5 5 5 PAS fold PAS_4 PF08448.5 gi|294495506|ref|YP_003541999.1| - 6.7e-53 177.4 0.0 4.3e-11 42.8 0.0 6.0 6 0 0 6 6 6 5 PAS fold PAS_8 PF13188.1 gi|294495506|ref|YP_003541999.1| - 1.3e-22 78.8 0.0 8e-07 28.7 0.0 5.5 5 0 0 5 5 5 4 PAS domain PAS_3 PF08447.6 gi|294495506|ref|YP_003541999.1| - 1.5e-22 79.4 3.2 1.3e-09 37.9 0.0 4.6 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.21 gi|294495506|ref|YP_003541999.1| - 5.6e-20 71.1 0.0 1.2e-19 70.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|294495506|ref|YP_003541999.1| - 9.8e-15 54.7 1.5 0.04 14.1 0.0 5.7 6 1 0 6 6 5 4 PAS domain HisKA PF00512.20 gi|294495506|ref|YP_003541999.1| - 2.2e-13 50.0 0.1 6.1e-13 48.5 0.1 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|294495506|ref|YP_003541999.1| - 5.3e-08 32.8 1.4 0.76 9.7 0.0 5.8 5 1 0 5 5 5 2 PAS fold PAS_11 PF14598.1 gi|294495506|ref|YP_003541999.1| - 2.2e-05 24.3 0.0 3.2 7.7 0.0 4.5 5 0 0 5 5 5 2 PAS domain HATPase_c_3 PF13589.1 gi|294495506|ref|YP_003541999.1| - 0.0024 17.5 0.0 0.0066 16.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|294495506|ref|YP_003541999.1| - 0.011 15.8 0.0 0.099 12.7 0.0 2.5 2 0 0 2 2 2 0 GAF domain GAF_2 PF13185.1 gi|294495506|ref|YP_003541999.1| - 0.096 13.1 0.0 0.27 11.7 0.0 1.8 1 0 0 1 1 1 0 GAF domain Topoisom_bac PF01131.15 gi|294495508|ref|YP_003542001.1| - 4.7e-107 358.3 0.0 6.1e-107 357.9 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|294495508|ref|YP_003542001.1| - 1.3e-15 56.6 25.1 7.6e-12 44.5 1.7 3.7 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|294495508|ref|YP_003542001.1| - 1.1e-13 51.0 0.0 2.8e-13 49.7 0.0 1.7 1 0 0 1 1 1 1 Toprim domain RP-C_C PF11800.3 gi|294495508|ref|YP_003542001.1| - 0.15 11.7 0.0 0.78 9.4 0.0 2.1 3 0 0 3 3 3 0 Replication protein C C-terminal region ADK_lid PF05191.9 gi|294495508|ref|YP_003542001.1| - 1.4 8.6 16.3 6.4 6.5 0.2 4.5 4 0 0 4 4 4 0 Adenylate kinase, active site lid DUF123 PF01986.11 gi|294495509|ref|YP_003542002.1| - 1.7e-29 101.8 0.0 2.2e-29 101.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 Nitroreductase PF00881.19 gi|294495510|ref|YP_003542003.1| - 1.1e-33 116.4 0.0 1.3e-33 116.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|294495510|ref|YP_003542003.1| - 0.0023 17.1 0.0 0.0074 15.4 0.0 1.9 3 0 0 3 3 3 1 Putative TM nitroreductase IlvN PF07991.7 gi|294495511|ref|YP_003542004.1| - 1.9e-74 248.5 0.4 2.6e-74 248.0 0.3 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|294495511|ref|YP_003542004.1| - 2.4e-56 189.6 0.0 3.4e-56 189.1 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|294495511|ref|YP_003542004.1| - 3.8e-07 30.4 0.0 7.4e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|294495511|ref|YP_003542004.1| - 1e-05 25.4 0.0 1.7e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|294495511|ref|YP_003542004.1| - 2.1e-05 23.7 0.0 4.9e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|294495511|ref|YP_003542004.1| - 0.00017 21.4 0.0 0.0003 20.6 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.11 gi|294495511|ref|YP_003542004.1| - 0.017 14.5 0.0 0.03 13.7 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA CoA_binding PF02629.14 gi|294495511|ref|YP_003542004.1| - 0.13 12.7 0.0 0.39 11.2 0.0 1.9 1 0 0 1 1 1 0 CoA binding domain ALS_ss_C PF10369.4 gi|294495512|ref|YP_003542005.1| - 3.1e-33 113.3 3.1 3.1e-33 113.3 2.1 1.7 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|294495512|ref|YP_003542005.1| - 1.4e-20 72.8 1.0 8.8e-20 70.2 0.1 2.3 2 1 0 2 2 2 1 ACT domain ACT PF01842.20 gi|294495512|ref|YP_003542005.1| - 4.2e-15 54.8 4.1 9e-15 53.8 0.1 2.7 1 1 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|294495512|ref|YP_003542005.1| - 0.0014 18.8 0.4 0.0014 18.8 0.2 1.9 2 0 0 2 2 2 1 ACT domain Saccharop_dh_N PF04455.7 gi|294495512|ref|YP_003542005.1| - 0.055 13.5 0.1 0.11 12.6 0.1 1.5 1 0 0 1 1 1 0 LOR/SDH bifunctional enzyme conserved region ACT_6 PF13740.1 gi|294495512|ref|YP_003542005.1| - 0.062 13.0 0.7 8.2 6.2 0.1 3.0 2 2 0 2 2 2 0 ACT domain SLS PF14611.1 gi|294495512|ref|YP_003542005.1| - 0.19 11.1 2.5 4.7 6.5 2.1 2.3 1 1 1 2 2 2 0 Mitochondrial inner-membrane-bound regulator TPP_enzyme_N PF02776.13 gi|294495513|ref|YP_003542006.1| - 1e-62 210.6 0.1 6e-61 204.8 0.1 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|294495513|ref|YP_003542006.1| - 1.3e-56 190.4 0.2 2.3e-55 186.3 0.1 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|294495513|ref|YP_003542006.1| - 2e-47 160.4 0.1 4.6e-47 159.2 0.0 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.14 gi|294495513|ref|YP_003542006.1| - 0.0071 15.8 0.7 0.018 14.5 0.4 1.9 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Ribosomal_S5 PF00333.15 gi|294495513|ref|YP_003542006.1| - 0.019 14.7 0.4 0.089 12.5 0.0 2.4 2 0 0 2 2 2 0 Ribosomal protein S5, N-terminal domain Abhydrolase_9 PF10081.4 gi|294495513|ref|YP_003542006.1| - 0.05 12.2 0.0 0.1 11.2 0.0 1.4 1 0 0 1 1 1 0 Alpha/beta-hydrolase family XFP_N PF09364.5 gi|294495513|ref|YP_003542006.1| - 0.072 11.6 0.0 0.16 10.5 0.0 1.5 1 0 0 1 1 1 0 XFP N-terminal domain E1_dh PF00676.15 gi|294495513|ref|YP_003542006.1| - 1.2 7.8 4.1 0.76 8.4 0.7 2.3 2 1 0 2 2 2 0 Dehydrogenase E1 component HMGL-like PF00682.14 gi|294495514|ref|YP_003542007.1| - 5e-59 199.8 0.4 8.6e-59 199.0 0.3 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|294495514|ref|YP_003542007.1| - 1.2e-37 128.7 3.0 1.9e-37 128.0 2.1 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Peptidase_M42 PF05343.9 gi|294495515|ref|YP_003542008.1| - 2.7e-112 374.2 2.9 3.6e-112 373.9 2.0 1.1 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|294495515|ref|YP_003542008.1| - 8e-13 48.3 0.1 1.3e-12 47.5 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|294495515|ref|YP_003542008.1| - 0.008 15.9 0.0 0.063 13.0 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 IMS PF00817.15 gi|294495516|ref|YP_003542009.1| - 5e-50 169.1 0.0 9.4e-50 168.2 0.0 1.5 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|294495516|ref|YP_003542009.1| - 4.1e-22 78.4 0.2 8.4e-22 77.4 0.2 1.5 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|294495516|ref|YP_003542009.1| - 6.8e-07 28.9 0.0 1.9e-06 27.5 0.0 1.8 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.1 gi|294495516|ref|YP_003542009.1| - 0.0022 18.1 0.1 0.016 15.3 0.0 2.3 2 2 0 2 2 2 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|294495516|ref|YP_003542009.1| - 0.063 13.2 0.1 0.42 10.5 0.0 2.3 2 0 0 2 2 2 0 Pathogenicity locus DUF4332 PF14229.1 gi|294495516|ref|YP_003542009.1| - 0.11 12.4 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) DUF1624 PF07786.7 gi|294495517|ref|YP_003542010.1| - 3.6e-64 216.1 12.4 4.2e-64 215.9 8.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.17 gi|294495517|ref|YP_003542010.1| - 6.1e-10 38.4 21.3 6.2e-07 28.5 4.9 2.1 1 1 1 2 2 2 2 Acyltransferase family OpgC_C PF10129.4 gi|294495517|ref|YP_003542010.1| - 0.0011 17.7 8.9 0.0023 16.7 1.1 2.5 1 1 1 2 2 2 2 OpgC protein DUF418 PF04235.7 gi|294495517|ref|YP_003542010.1| - 0.28 10.8 10.5 0.022 14.4 2.2 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF418) LAB_N PF07578.6 gi|294495517|ref|YP_003542010.1| - 0.38 10.7 5.2 0.86 9.5 1.0 2.8 2 1 0 2 2 2 0 Lipid A Biosynthesis N-terminal domain DUF4199 PF13858.1 gi|294495517|ref|YP_003542010.1| - 3.8 7.4 12.5 0.061 13.2 1.7 3.0 1 1 0 2 2 2 0 Protein of unknown function (DUF4199) DUF2072 PF09845.4 gi|294495518|ref|YP_003542011.1| - 2.9e-42 143.7 1.8 3.6e-42 143.3 1.2 1.1 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) NinG PF05766.7 gi|294495518|ref|YP_003542011.1| - 0.014 15.1 0.1 0.018 14.7 0.1 1.1 1 0 0 1 1 1 0 Bacteriophage Lambda NinG protein Spt4 PF06093.8 gi|294495518|ref|YP_003542011.1| - 0.063 13.1 1.0 0.2 11.5 0.3 2.1 2 1 0 2 2 2 0 Spt4/RpoE2 zinc finger zf-ribbon_3 PF13248.1 gi|294495518|ref|YP_003542011.1| - 0.13 11.5 3.6 1.6 7.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|294495518|ref|YP_003542011.1| - 0.15 11.5 3.4 0.33 10.5 2.4 1.6 1 0 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|294495518|ref|YP_003542011.1| - 0.22 10.8 2.8 10 5.5 0.1 2.8 2 0 0 2 2 2 0 TFIIB zinc-binding PNP_UDP_1 PF01048.15 gi|294495519|ref|YP_003542012.1| - 1.1e-43 148.9 0.0 1.2e-43 148.7 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily RICTOR_M PF14666.1 gi|294495519|ref|YP_003542012.1| - 0.086 11.8 0.1 0.12 11.3 0.1 1.2 1 0 0 1 1 1 0 Rapamycin-insensitive companion of mTOR, middle domain Pribosyltran PF00156.22 gi|294495520|ref|YP_003542013.1| - 5.6e-21 74.5 0.0 7.6e-21 74.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain EamA PF00892.15 gi|294495521|ref|YP_003542014.1| - 3.4e-19 69.1 36.7 7.5e-10 38.9 11.2 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|294495521|ref|YP_003542014.1| - 1.7e-06 28.1 7.1 1.7e-06 28.1 5.0 3.6 2 2 2 4 4 4 2 Multidrug resistance efflux transporter Nuc_sug_transp PF04142.10 gi|294495521|ref|YP_003542014.1| - 0.026 13.6 3.6 0.029 13.4 0.8 2.2 1 1 1 2 2 2 0 Nucleotide-sugar transporter UPF0546 PF10639.4 gi|294495521|ref|YP_003542014.1| - 0.078 12.7 8.4 0.094 12.5 0.3 2.8 2 1 1 3 3 3 0 Uncharacterised protein family UPF0546 SRP54 PF00448.17 gi|294495522|ref|YP_003542015.1| - 1.9e-68 229.7 0.1 3.1e-68 229.1 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|294495522|ref|YP_003542015.1| - 2.8e-28 98.2 7.9 2.8e-28 98.2 5.5 3.0 4 0 0 4 4 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|294495522|ref|YP_003542015.1| - 3.6e-17 62.2 0.5 3.6e-17 62.2 0.3 2.3 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|294495522|ref|YP_003542015.1| - 5.1e-08 32.5 1.0 6.8e-07 28.8 0.7 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|294495522|ref|YP_003542015.1| - 4.3e-05 23.2 0.1 9.8e-05 22.0 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B 6PF2K PF01591.13 gi|294495522|ref|YP_003542015.1| - 0.0007 18.7 0.0 0.0016 17.5 0.0 1.6 1 0 0 1 1 1 1 6-phosphofructo-2-kinase AAA_33 PF13671.1 gi|294495522|ref|YP_003542015.1| - 0.0013 18.6 0.0 0.0024 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|294495522|ref|YP_003542015.1| - 0.0017 19.1 0.1 0.0042 17.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|294495522|ref|YP_003542015.1| - 0.0037 17.2 0.0 0.0082 16.1 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|294495522|ref|YP_003542015.1| - 0.0052 16.9 0.0 0.021 14.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.12 gi|294495522|ref|YP_003542015.1| - 0.0061 15.9 0.1 0.019 14.3 0.0 1.8 2 0 0 2 2 1 1 Thymidylate kinase cobW PF02492.14 gi|294495522|ref|YP_003542015.1| - 0.0082 15.6 0.1 0.055 12.9 0.1 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|294495522|ref|YP_003542015.1| - 0.0095 15.0 0.0 0.02 14.0 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin ATP_bind_1 PF03029.12 gi|294495522|ref|YP_003542015.1| - 0.0097 15.4 0.0 0.034 13.6 0.0 1.9 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein APS_kinase PF01583.15 gi|294495522|ref|YP_003542015.1| - 0.011 15.3 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_19 PF13245.1 gi|294495522|ref|YP_003542015.1| - 0.013 15.2 0.0 0.055 13.2 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain LpxK PF02606.9 gi|294495522|ref|YP_003542015.1| - 0.015 14.2 0.1 0.027 13.4 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase ArgK PF03308.11 gi|294495522|ref|YP_003542015.1| - 0.015 14.0 0.0 0.075 11.7 0.0 2.1 2 0 0 2 2 2 0 ArgK protein AAA_30 PF13604.1 gi|294495522|ref|YP_003542015.1| - 0.019 14.5 0.0 0.07 12.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|294495522|ref|YP_003542015.1| - 0.02 14.4 0.0 0.06 12.8 0.0 1.9 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation KTI12 PF08433.5 gi|294495522|ref|YP_003542015.1| - 0.025 13.8 0.0 0.055 12.6 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 TrwB_AAD_bind PF10412.4 gi|294495522|ref|YP_003542015.1| - 0.033 12.8 0.0 0.065 11.8 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.2 gi|294495522|ref|YP_003542015.1| - 0.041 13.3 0.1 0.072 12.5 0.1 1.7 1 1 0 1 1 1 0 AAA-like domain AAA_5 PF07728.9 gi|294495522|ref|YP_003542015.1| - 0.045 13.4 0.9 1 9.0 0.1 3.0 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|294495522|ref|YP_003542015.1| - 0.067 13.1 0.0 0.18 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|294495522|ref|YP_003542015.1| - 0.087 13.1 0.2 0.27 11.5 0.1 1.9 1 1 0 1 1 1 0 AAA domain Rib_5-P_isom_A PF06026.9 gi|294495523|ref|YP_003542016.1| - 1.6e-58 196.8 0.4 2e-58 196.5 0.3 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|294495523|ref|YP_003542016.1| - 1.2e-07 31.5 1.1 6.9e-06 25.7 0.1 2.2 1 1 0 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|294495523|ref|YP_003542016.1| - 0.012 14.4 0.1 0.019 13.8 0.0 1.3 1 0 0 1 1 1 0 Putative sugar-binding domain DsrD PF08679.6 gi|294495523|ref|YP_003542016.1| - 0.032 14.2 0.0 0.063 13.2 0.0 1.4 1 0 0 1 1 1 0 Dissimilatory sulfite reductase D (DsrD) tRNA-synt_2 PF00152.15 gi|294495524|ref|YP_003542017.1| - 1.7e-96 322.9 0.3 2.1e-96 322.6 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|294495524|ref|YP_003542017.1| - 4.4e-14 52.0 0.1 7.7e-14 51.3 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|294495524|ref|YP_003542017.1| - 9.9e-05 21.6 0.4 0.0071 15.5 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) DNA_gyraseB PF00204.20 gi|294495525|ref|YP_003542018.1| - 2.8e-62 208.9 0.1 4.1e-62 208.4 0.1 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|294495525|ref|YP_003542018.1| - 7e-32 108.9 0.1 1.5e-31 107.9 0.1 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|294495525|ref|YP_003542018.1| - 1.3e-21 76.4 0.0 3.2e-21 75.1 0.0 1.7 1 0 0 1 1 1 1 Toprim domain HATPase_c PF02518.21 gi|294495525|ref|YP_003542018.1| - 1.5e-18 66.4 0.1 3e-18 65.5 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|294495525|ref|YP_003542018.1| - 2.5e-05 23.9 0.1 6.8e-05 22.5 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GMC_oxred_C PF05199.8 gi|294495525|ref|YP_003542018.1| - 0.061 13.6 0.0 0.27 11.5 0.0 2.0 2 0 0 2 2 2 0 GMC oxidoreductase DNA_topoisoIV PF00521.15 gi|294495526|ref|YP_003542019.1| - 3e-153 510.6 0.3 4e-153 510.2 0.2 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|294495526|ref|YP_003542019.1| - 1.8e-67 222.4 16.1 1.1e-15 56.6 0.2 6.5 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller SSF PF00474.12 gi|294495527|ref|YP_003542020.1| - 2.9e-59 200.7 38.9 2.9e-59 200.7 27.0 1.8 3 0 0 3 3 3 1 Sodium:solute symporter family DUF2973 PF11189.3 gi|294495527|ref|YP_003542020.1| - 4.5 7.1 0.0 4.5 7.1 0.0 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF2973) SOR_SNZ PF01680.12 gi|294495529|ref|YP_003542022.1| - 1.3e-105 351.5 8.7 1.9e-105 351.0 6.0 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|294495529|ref|YP_003542022.1| - 3.9e-12 45.7 6.3 3.4e-08 32.8 0.4 2.4 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|294495529|ref|YP_003542022.1| - 0.00032 19.6 0.8 0.069 11.9 0.1 2.4 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.9 gi|294495529|ref|YP_003542022.1| - 0.0017 17.3 1.7 0.035 13.0 0.0 2.8 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|294495529|ref|YP_003542022.1| - 0.0054 16.0 0.8 0.011 14.9 0.0 1.9 2 1 0 2 2 2 1 PcrB family IGPS PF00218.16 gi|294495529|ref|YP_003542022.1| - 0.007 15.4 0.1 0.049 12.6 0.0 2.1 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase NMO PF03060.10 gi|294495529|ref|YP_003542022.1| - 0.0095 15.1 0.3 0.0095 15.1 0.2 2.3 2 0 0 2 2 2 1 Nitronate monooxygenase MttA_Hcf106 PF02416.11 gi|294495529|ref|YP_003542022.1| - 0.032 13.3 0.5 0.9 8.6 0.0 2.4 2 0 0 2 2 2 0 mttA/Hcf106 family His_biosynth PF00977.16 gi|294495529|ref|YP_003542022.1| - 0.041 13.1 0.2 0.35 10.1 0.0 2.2 2 0 0 2 2 2 0 Histidine biosynthesis protein DUF561 PF04481.7 gi|294495529|ref|YP_003542022.1| - 0.093 11.6 0.4 1.6 7.6 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF561) SNO PF01174.14 gi|294495530|ref|YP_003542023.1| - 4.2e-53 179.7 0.0 4.7e-53 179.6 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|294495530|ref|YP_003542023.1| - 2.8e-10 40.0 0.0 4.2e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|294495530|ref|YP_003542023.1| - 4.6e-08 32.7 0.1 2e-07 30.6 0.1 1.8 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.12 gi|294495530|ref|YP_003542023.1| - 4e-06 26.6 0.0 4.9e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 Peptidase_C26 PF07722.8 gi|294495530|ref|YP_003542023.1| - 0.0005 19.5 0.1 0.0066 15.9 0.1 2.4 2 1 0 2 2 2 1 Peptidase C26 DUF4066 PF13278.1 gi|294495530|ref|YP_003542023.1| - 0.007 15.6 0.0 0.013 14.7 0.0 1.4 1 0 0 1 1 1 1 Putative amidotransferase Pyridox_oxidase PF01243.15 gi|294495531|ref|YP_003542024.1| - 2.7e-15 56.1 0.0 3.3e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF1724 PF08350.5 gi|294495532|ref|YP_003542025.1| - 1.3e-14 53.4 0.3 3e-14 52.2 0.2 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|294495532|ref|YP_003542025.1| - 0.00016 21.2 0.2 0.00026 20.5 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|294495532|ref|YP_003542025.1| - 0.00032 20.4 0.1 0.0011 18.7 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|294495532|ref|YP_003542025.1| - 0.0052 17.0 0.0 0.0091 16.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HemN_C PF06969.11 gi|294495532|ref|YP_003542025.1| - 0.03 14.3 0.0 0.061 13.3 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain HxlR PF01638.12 gi|294495532|ref|YP_003542025.1| - 0.059 13.0 0.3 0.18 11.4 0.2 1.8 1 1 0 1 1 1 0 HxlR-like helix-turn-helix Phage_rep_org_N PF09681.5 gi|294495532|ref|YP_003542025.1| - 0.063 12.8 0.3 0.12 11.9 0.2 1.4 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF4389 PF14333.1 gi|294495533|ref|YP_003542026.1| - 8.5e-21 73.4 0.8 1.1e-20 73.1 0.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4389) GIIM PF08388.6 gi|294495533|ref|YP_003542026.1| - 0.0033 17.1 0.3 0.0064 16.2 0.1 1.5 2 0 0 2 2 2 1 Group II intron, maturase-specific domain Ribosomal_S6e PF01092.14 gi|294495534|ref|YP_003542027.1| - 1e-33 115.6 1.4 1.2e-33 115.4 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e GTP_EFTU PF00009.22 gi|294495535|ref|YP_003542028.1| - 6.6e-35 120.2 0.0 3.9e-34 117.7 0.0 2.2 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|294495535|ref|YP_003542028.1| - 3.1e-24 84.9 2.0 7.7e-24 83.6 1.4 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|294495535|ref|YP_003542028.1| - 8.1e-15 54.7 13.8 2.4e-11 43.5 0.1 3.4 3 0 0 3 3 3 2 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|294495535|ref|YP_003542028.1| - 5.8e-11 41.8 2.6 6.9e-11 41.6 0.5 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|294495535|ref|YP_003542028.1| - 3.5e-07 30.1 0.1 1.4e-06 28.2 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|294495535|ref|YP_003542028.1| - 0.0006 19.3 0.0 0.022 14.2 0.0 3.0 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.12 gi|294495535|ref|YP_003542028.1| - 0.0019 17.8 0.0 0.0075 15.8 0.0 2.0 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|294495535|ref|YP_003542028.1| - 0.0039 17.6 0.0 0.022 15.2 0.0 2.1 2 0 0 2 2 2 1 Miro-like protein cobW PF02492.14 gi|294495535|ref|YP_003542028.1| - 0.0042 16.5 0.3 4.9 6.5 0.0 3.3 2 1 1 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.18 gi|294495535|ref|YP_003542028.1| - 0.027 14.2 0.1 1.1 9.0 0.0 2.8 3 0 0 3 3 3 0 Dynamin family NDK PF00334.14 gi|294495536|ref|YP_003542029.1| - 1.4e-55 186.7 0.1 1.6e-55 186.6 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_S28e PF01200.13 gi|294495537|ref|YP_003542030.1| - 3.8e-29 100.2 0.3 4e-29 100.1 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.21 gi|294495538|ref|YP_003542031.1| - 1.6e-24 85.2 2.0 1.9e-24 84.9 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|294495538|ref|YP_003542031.1| - 0.019 14.7 0.1 0.029 14.1 0.0 1.2 1 0 0 1 1 1 0 PELOTA RNA binding domain YtxH PF12732.2 gi|294495538|ref|YP_003542031.1| - 0.2 12.0 4.2 0.83 10.0 0.5 2.1 2 0 0 2 2 2 0 YtxH-like protein ETRAMP PF09716.5 gi|294495539|ref|YP_003542032.1| - 0.034 14.0 0.0 0.036 13.9 0.0 1.2 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) DDE_Tnp_1 PF01609.16 gi|294495540|ref|YP_003542033.1| - 1.7e-15 57.1 3.6 2.7e-15 56.4 2.5 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|294495540|ref|YP_003542033.1| - 4e-05 23.7 3.5 4.2e-05 23.6 1.4 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|294495540|ref|YP_003542033.1| - 0.00077 19.0 0.5 0.0012 18.4 0.4 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|294495540|ref|YP_003542033.1| - 0.021 14.5 0.8 0.042 13.5 0.6 1.5 1 0 0 1 1 1 0 Transposase DDE domain DUF772 PF05598.6 gi|294495540|ref|YP_003542033.1| - 0.031 14.1 0.1 0.085 12.7 0.1 1.7 1 0 0 1 1 1 0 Transposase domain (DUF772) ZYG-11_interact PF05884.7 gi|294495541|ref|YP_003542034.1| - 0.0061 15.6 0.0 0.007 15.4 0.0 1.0 1 0 0 1 1 1 1 Interactor of ZYG-11 Cas1_AcylT PF07779.7 gi|294495541|ref|YP_003542034.1| - 0.02 13.3 0.1 0.02 13.3 0.1 1.0 1 0 0 1 1 1 0 10 TM Acyl Transferase domain found in Cas1p Apo-CII PF05355.6 gi|294495541|ref|YP_003542034.1| - 0.062 13.1 0.1 0.077 12.8 0.1 1.1 1 0 0 1 1 1 0 Apolipoprotein C-II TarH PF02203.10 gi|294495542|ref|YP_003542035.1| - 0.06 13.1 0.2 0.17 11.6 0.1 1.7 1 0 0 1 1 1 0 Tar ligand binding domain homologue DUF3784 PF12650.2 gi|294495542|ref|YP_003542035.1| - 0.061 13.2 0.3 1 9.3 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF3784) PAS_3 PF08447.6 gi|294495543|ref|YP_003542036.1| - 2.8e-52 174.7 10.2 9.7e-18 64.0 0.2 4.6 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.1 gi|294495543|ref|YP_003542036.1| - 1e-31 109.3 7.2 3.4e-10 40.2 0.0 4.9 5 0 0 5 5 5 4 PAS domain GAF_2 PF13185.1 gi|294495543|ref|YP_003542036.1| - 2.7e-29 102.5 0.0 3.9e-14 53.3 0.0 2.3 2 0 0 2 2 2 2 GAF domain PAS PF00989.19 gi|294495543|ref|YP_003542036.1| - 6.9e-25 87.0 2.6 5.5e-06 26.1 0.1 4.5 4 0 0 4 4 4 4 PAS fold PAS_4 PF08448.5 gi|294495543|ref|YP_003542036.1| - 2.1e-22 79.2 0.0 8.7e-06 25.7 0.0 5.4 6 0 0 6 6 6 4 PAS fold GAF_3 PF13492.1 gi|294495543|ref|YP_003542036.1| - 4e-19 68.9 0.0 2.5e-10 40.5 0.0 2.6 2 0 0 2 2 2 2 GAF domain GAF PF01590.21 gi|294495543|ref|YP_003542036.1| - 1.9e-09 37.8 0.0 2.6e-05 24.3 0.0 2.4 2 0 0 2 2 2 2 GAF domain PAS_11 PF14598.1 gi|294495543|ref|YP_003542036.1| - 2.6e-09 37.0 0.3 1 9.3 0.0 5.2 4 0 0 4 4 4 3 PAS domain PAS_7 PF12860.2 gi|294495543|ref|YP_003542036.1| - 0.016 15.2 0.5 1.2 9.1 0.0 3.3 3 0 0 3 3 3 0 PAS fold PAS_8 PF13188.1 gi|294495543|ref|YP_003542036.1| - 0.019 14.8 0.0 0.15 11.9 0.0 2.6 2 0 0 2 2 2 0 PAS domain FliH PF02108.11 gi|294495543|ref|YP_003542036.1| - 0.047 13.5 1.7 28 4.5 0.0 4.6 5 0 0 5 5 5 0 Flagellar assembly protein FliH UDG PF03167.14 gi|294495544|ref|YP_003542037.1| - 5.9e-10 38.8 0.0 7.2e-10 38.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily TPR_11 PF13414.1 gi|294495545|ref|YP_003542038.1| - 5.7e-38 128.4 7.6 1.7e-14 53.1 0.1 3.6 3 1 0 3 3 3 3 TPR repeat TPR_2 PF07719.12 gi|294495545|ref|YP_003542038.1| - 1.5e-34 115.1 8.3 8.7e-06 25.2 0.0 6.4 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_1 PF00515.23 gi|294495545|ref|YP_003542038.1| - 2.4e-32 109.1 12.1 9.5e-07 28.1 0.0 6.5 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|294495545|ref|YP_003542038.1| - 1.8e-25 88.9 0.0 1.8e-10 41.2 0.0 4.3 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|294495545|ref|YP_003542038.1| - 7.5e-22 75.8 0.1 0.0018 18.7 0.0 6.2 3 2 3 6 6 6 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|294495545|ref|YP_003542038.1| - 1.2e-21 76.7 5.8 1.7e-11 44.2 0.2 4.0 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|294495545|ref|YP_003542038.1| - 9e-21 73.6 2.6 2.8e-08 33.5 0.0 4.5 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|294495545|ref|YP_003542038.1| - 7.9e-18 63.1 2.4 0.00027 20.8 0.0 7.0 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|294495545|ref|YP_003542038.1| - 1e-17 62.4 5.7 0.0009 18.8 0.0 6.1 5 1 1 6 6 6 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|294495545|ref|YP_003542038.1| - 2.4e-14 52.9 0.7 1.4e-05 24.8 0.0 4.8 3 2 2 5 5 5 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|294495545|ref|YP_003542038.1| - 3.8e-14 52.0 0.3 0.38 11.3 0.0 6.3 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|294495545|ref|YP_003542038.1| - 1.3e-12 46.4 2.5 0.022 14.5 0.0 6.1 6 0 0 6 6 6 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|294495545|ref|YP_003542038.1| - 4.1e-11 42.8 9.1 8.1e-05 22.6 1.1 4.8 2 2 1 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.1 gi|294495545|ref|YP_003542038.1| - 5.1e-11 42.2 3.1 0.0047 16.7 0.1 5.3 5 1 1 6 6 6 2 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.3 gi|294495545|ref|YP_003542038.1| - 7e-09 34.9 0.7 0.0097 14.7 0.0 4.3 2 2 2 4 4 4 3 NMDA receptor-regulated protein 1 TPR_15 PF13429.1 gi|294495545|ref|YP_003542038.1| - 1.3e-07 30.9 0.5 0.055 12.5 0.0 4.1 1 1 2 4 4 4 2 Tetratricopeptide repeat TPR_3 PF07720.7 gi|294495545|ref|YP_003542038.1| - 1.9e-06 27.5 10.9 0.096 12.5 0.3 5.7 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|294495545|ref|YP_003542038.1| - 2.1e-06 27.4 1.4 0.049 13.5 0.0 5.1 6 0 0 6 6 6 1 Tetratricopeptide repeat BTAD PF03704.12 gi|294495545|ref|YP_003542038.1| - 1.9e-05 25.0 0.0 0.11 12.7 0.0 3.1 3 0 0 3 3 3 1 Bacterial transcriptional activator domain Coatomer_E PF04733.9 gi|294495545|ref|YP_003542038.1| - 0.00088 18.5 0.1 1.1 8.4 0.0 2.8 2 1 0 2 2 2 2 Coatomer epsilon subunit MIT PF04212.13 gi|294495545|ref|YP_003542038.1| - 0.0079 16.0 5.0 0.93 9.4 0.3 4.3 5 0 0 5 5 5 1 MIT (microtubule interacting and transport) domain PPR PF01535.15 gi|294495545|ref|YP_003542038.1| - 0.0089 15.9 2.2 5.9 7.1 0.0 4.7 5 0 0 5 5 4 0 PPR repeat TPR_20 PF14561.1 gi|294495545|ref|YP_003542038.1| - 0.011 15.7 0.5 4.3 7.5 0.0 3.6 3 1 1 4 4 4 0 Tetratricopeptide repeat ALIX_LYPXL_bnd PF13949.1 gi|294495545|ref|YP_003542038.1| - 0.016 14.1 0.3 0.032 13.1 0.2 1.5 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV RPN7 PF10602.4 gi|294495545|ref|YP_003542038.1| - 0.12 11.6 1.4 8 5.8 0.0 3.6 3 1 1 4 4 4 0 26S proteasome subunit RPN7 Exonuc_VII_S PF02609.11 gi|294495545|ref|YP_003542038.1| - 6 6.7 5.9 1.4 8.7 0.2 2.8 3 0 0 3 3 3 0 Exonuclease VII small subunit dCMP_cyt_deam_1 PF00383.17 gi|294495546|ref|YP_003542039.1| - 4.2e-21 74.5 0.0 6.9e-21 73.8 0.0 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.1 gi|294495546|ref|YP_003542039.1| - 0.0019 17.8 0.1 0.0096 15.5 0.0 1.8 2 0 0 2 2 2 1 MafB19-like deaminase APOBEC_N PF08210.6 gi|294495546|ref|YP_003542039.1| - 0.045 13.3 0.2 0.05 13.2 0.1 1.3 1 1 0 1 1 1 0 APOBEC-like N-terminal domain DUF447 PF04289.7 gi|294495547|ref|YP_003542040.1| - 1.4e-49 168.0 0.1 1.7e-49 167.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) CitG PF01874.11 gi|294495548|ref|YP_003542041.1| - 1.7e-78 263.5 0.0 2e-78 263.4 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Dus PF01207.12 gi|294495549|ref|YP_003542042.1| - 7e-14 51.3 0.2 1.2e-13 50.5 0.1 1.4 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|294495549|ref|YP_003542042.1| - 1.1e-09 37.8 0.2 5.6e-09 35.6 0.1 1.8 1 1 1 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.20 gi|294495549|ref|YP_003542042.1| - 6.9e-05 21.8 0.3 9.9e-05 21.3 0.2 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|294495549|ref|YP_003542042.1| - 0.0041 16.1 0.1 0.0063 15.4 0.1 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|294495549|ref|YP_003542042.1| - 0.051 12.5 0.3 0.88 8.4 0.0 2.6 2 1 0 3 3 3 0 Dihydroorotate dehydrogenase PhoU PF01895.14 gi|294495550|ref|YP_003542043.1| - 8.9e-34 115.8 14.7 8.7e-19 67.7 3.6 2.1 2 0 0 2 2 2 2 PhoU domain Baculo_PEP_C PF04513.7 gi|294495550|ref|YP_003542043.1| - 0.029 14.1 2.1 0.057 13.2 0.4 2.1 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus NOSIC PF08060.8 gi|294495550|ref|YP_003542043.1| - 0.031 14.0 0.5 30 4.5 0.0 3.6 3 0 0 3 3 3 0 NOSIC (NUC001) domain Sec8_exocyst PF04048.9 gi|294495550|ref|YP_003542043.1| - 0.042 13.4 1.4 0.31 10.6 0.0 2.5 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain FliD_C PF07195.7 gi|294495550|ref|YP_003542043.1| - 0.062 12.5 1.6 0.11 11.7 0.5 1.7 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Tho2 PF11262.3 gi|294495550|ref|YP_003542043.1| - 0.083 11.9 2.2 0.17 10.9 0.4 1.9 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 Picorna_P3A PF06363.6 gi|294495550|ref|YP_003542043.1| - 0.11 12.4 2.4 0.34 10.9 0.3 2.4 1 1 0 2 2 2 0 Picornaviridae P3A protein RPA_interact_M PF14767.1 gi|294495550|ref|YP_003542043.1| - 0.19 12.5 7.3 0.088 13.5 1.7 2.3 2 0 0 2 2 2 0 Replication protein A interacting middle DUF1789 PF08748.6 gi|294495550|ref|YP_003542043.1| - 0.34 11.0 4.2 1.2 9.2 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1789) IncA PF04156.9 gi|294495550|ref|YP_003542043.1| - 0.42 10.1 6.9 0.69 9.4 2.5 2.1 1 1 1 2 2 2 0 IncA protein Reo_sigmaC PF04582.7 gi|294495550|ref|YP_003542043.1| - 0.85 8.7 3.7 1.4 8.0 1.4 2.0 1 1 2 3 3 3 0 Reovirus sigma C capsid protein Lipoprotein_6 PF01441.14 gi|294495550|ref|YP_003542043.1| - 2 8.2 6.7 4.2 7.1 0.1 2.9 1 1 2 3 3 3 0 Lipoprotein Snapin_Pallidin PF14712.1 gi|294495550|ref|YP_003542043.1| - 3.7 7.9 6.3 40 4.6 0.0 3.0 3 1 0 3 3 2 0 Snapin/Pallidin DUF1664 PF07889.7 gi|294495550|ref|YP_003542043.1| - 5 6.9 7.5 4.7 7.0 2.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) SNARE PF05739.14 gi|294495550|ref|YP_003542043.1| - 6.8 6.4 8.2 1.5 8.5 1.4 2.9 2 1 1 3 3 3 0 SNARE domain DUF4200 PF13863.1 gi|294495550|ref|YP_003542043.1| - 7.1 6.5 9.0 5.2 7.0 3.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) ABC_tran PF00005.22 gi|294495551|ref|YP_003542044.1| - 1.9e-30 105.9 0.0 2.6e-30 105.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|294495551|ref|YP_003542044.1| - 1.9e-13 51.0 0.1 1.2e-06 28.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|294495551|ref|YP_003542044.1| - 4.7e-08 32.5 0.5 3.2e-06 26.5 0.4 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|294495551|ref|YP_003542044.1| - 8.6e-06 25.0 0.6 0.023 13.7 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|294495551|ref|YP_003542044.1| - 0.00013 22.3 0.1 0.0005 20.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|294495551|ref|YP_003542044.1| - 0.00015 20.9 0.0 0.00024 20.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|294495551|ref|YP_003542044.1| - 0.00029 20.2 0.0 0.00056 19.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|294495551|ref|YP_003542044.1| - 0.00035 20.7 0.0 0.00066 19.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|294495551|ref|YP_003542044.1| - 0.0013 18.7 0.0 0.011 15.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_13 PF13166.1 gi|294495551|ref|YP_003542044.1| - 0.0052 15.3 0.1 0.59 8.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|294495551|ref|YP_003542044.1| - 0.01 16.6 0.1 0.027 15.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|294495551|ref|YP_003542044.1| - 0.014 15.1 0.0 1.2 8.9 0.0 2.2 2 0 0 2 2 2 0 Part of AAA domain AAA_33 PF13671.1 gi|294495551|ref|YP_003542044.1| - 0.022 14.6 0.0 0.036 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|294495551|ref|YP_003542044.1| - 0.023 14.3 0.1 0.066 12.9 0.1 1.9 1 1 0 1 1 1 0 Archaeal ATPase AAA PF00004.24 gi|294495551|ref|YP_003542044.1| - 0.025 14.7 0.0 0.44 10.7 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|294495551|ref|YP_003542044.1| - 0.032 14.1 0.1 0.1 12.4 0.0 1.9 1 1 1 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|294495551|ref|YP_003542044.1| - 0.041 13.2 0.0 0.082 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|294495551|ref|YP_003542044.1| - 0.053 12.9 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_18 PF13238.1 gi|294495551|ref|YP_003542044.1| - 0.072 13.4 0.0 0.14 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|294495551|ref|YP_003542044.1| - 0.074 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Rad17 PF03215.10 gi|294495551|ref|YP_003542044.1| - 0.089 11.4 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Adeno_IVa2 PF02456.10 gi|294495551|ref|YP_003542044.1| - 0.091 11.4 0.0 0.32 9.5 0.0 1.7 2 0 0 2 2 2 0 Adenovirus IVa2 protein PRK PF00485.13 gi|294495551|ref|YP_003542044.1| - 0.091 12.3 0.0 0.21 11.1 0.0 1.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.7 gi|294495551|ref|YP_003542044.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain BPD_transp_1 PF00528.17 gi|294495552|ref|YP_003542045.1| - 2.4e-26 92.3 11.3 2.4e-26 92.3 7.8 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3566 PF12089.3 gi|294495552|ref|YP_003542045.1| - 0.032 14.2 0.7 0.089 12.8 0.5 1.8 1 0 0 1 1 1 0 Transmembrane domain of unknown function (DUF3566) FtsL PF04999.8 gi|294495552|ref|YP_003542045.1| - 0.04 13.6 0.5 6.4 6.5 0.0 2.6 2 0 0 2 2 2 0 Cell division protein FtsL BPD_transp_1 PF00528.17 gi|294495553|ref|YP_003542046.1| - 2.6e-22 79.2 14.3 2.6e-22 79.2 9.9 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF1295 PF06966.7 gi|294495553|ref|YP_003542046.1| - 0.024 13.9 0.2 0.11 11.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1295) PBP_like_2 PF12849.2 gi|294495554|ref|YP_003542047.1| - 1.6e-49 168.9 5.0 2.1e-49 168.4 3.4 1.2 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|294495554|ref|YP_003542047.1| - 9.9e-25 86.6 0.1 1.3e-24 86.2 0.1 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|294495554|ref|YP_003542047.1| - 4.2e-13 49.4 0.0 4.9e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|294495554|ref|YP_003542047.1| - 0.069 12.2 0.0 0.19 10.7 0.0 1.7 2 0 0 2 2 2 0 LysR substrate binding domain PBP_like_2 PF12849.2 gi|294495555|ref|YP_003542048.1| - 3.4e-45 154.6 1.6 6.1e-45 153.8 1.1 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|294495555|ref|YP_003542048.1| - 1.7e-20 72.7 0.0 2.4e-20 72.2 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|294495555|ref|YP_003542048.1| - 1.6e-06 27.9 0.0 2e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|294495555|ref|YP_003542048.1| - 0.0095 15.0 0.0 0.046 12.8 0.0 1.9 2 0 0 2 2 2 1 LysR substrate binding domain Amidohydro_4 PF13147.1 gi|294495557|ref|YP_003542050.1| - 2.1e-28 100.1 0.0 2.6e-28 99.8 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|294495557|ref|YP_003542050.1| - 4.3e-21 75.9 0.0 5.1e-20 72.3 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|294495557|ref|YP_003542050.1| - 5.6e-10 38.8 0.9 1.3e-09 37.7 0.6 1.6 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|294495557|ref|YP_003542050.1| - 6.5e-05 22.3 0.0 0.0068 15.6 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family KaiC PF06745.8 gi|294495558|ref|YP_003542051.1| - 2e-42 144.8 0.2 5.3e-42 143.4 0.1 1.6 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|294495558|ref|YP_003542051.1| - 1.5e-11 44.1 0.0 2.5e-11 43.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|294495558|ref|YP_003542051.1| - 3.5e-07 29.6 0.0 5.2e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_14 PF13173.1 gi|294495558|ref|YP_003542051.1| - 4.1e-06 26.7 0.0 1.1e-05 25.3 0.0 1.7 1 1 1 2 2 2 1 AAA domain DnaB_C PF03796.10 gi|294495558|ref|YP_003542051.1| - 3.1e-05 23.0 0.0 4.4e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_19 PF13245.1 gi|294495558|ref|YP_003542051.1| - 6.3e-05 22.6 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|294495558|ref|YP_003542051.1| - 0.00026 21.1 0.1 0.0006 19.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|294495558|ref|YP_003542051.1| - 0.00049 20.8 0.6 0.0011 19.8 0.4 1.9 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|294495558|ref|YP_003542051.1| - 0.00084 17.7 0.1 0.4 8.9 0.0 2.2 2 0 0 2 2 2 2 GvpD gas vesicle protein IstB_IS21 PF01695.12 gi|294495558|ref|YP_003542051.1| - 0.0014 18.1 0.0 0.0023 17.3 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein PAXNEB PF05625.6 gi|294495558|ref|YP_003542051.1| - 0.0015 17.4 0.1 0.0025 16.7 0.0 1.2 1 0 0 1 1 1 1 PAXNEB protein DAP3 PF10236.4 gi|294495558|ref|YP_003542051.1| - 0.0017 17.3 0.0 0.11 11.4 0.0 2.2 1 1 1 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 AAA PF00004.24 gi|294495558|ref|YP_003542051.1| - 0.0018 18.4 0.0 0.0031 17.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|294495558|ref|YP_003542051.1| - 0.002 18.4 0.0 0.0033 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|294495558|ref|YP_003542051.1| - 0.0043 16.0 0.0 0.0082 15.0 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|294495558|ref|YP_003542051.1| - 0.0044 16.7 0.0 0.0082 15.8 0.0 1.5 1 0 0 1 1 1 1 NTPase AAA_24 PF13479.1 gi|294495558|ref|YP_003542051.1| - 0.0051 16.4 0.0 0.0081 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|294495558|ref|YP_003542051.1| - 0.0084 15.9 0.0 0.017 14.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.6 gi|294495558|ref|YP_003542051.1| - 0.0085 15.0 0.1 0.013 14.3 0.1 1.3 1 0 0 1 1 1 1 Rad51 AAA_16 PF13191.1 gi|294495558|ref|YP_003542051.1| - 0.0093 15.9 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain MobB PF03205.9 gi|294495558|ref|YP_003542051.1| - 0.015 14.9 0.1 0.049 13.3 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_11 PF13086.1 gi|294495558|ref|YP_003542051.1| - 0.018 14.6 0.0 0.03 13.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|294495558|ref|YP_003542051.1| - 0.02 14.5 0.0 0.032 13.8 0.0 1.4 1 1 0 1 1 1 0 NACHT domain AAA_5 PF07728.9 gi|294495558|ref|YP_003542051.1| - 0.021 14.5 0.1 0.042 13.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|294495558|ref|YP_003542051.1| - 0.025 14.5 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|294495558|ref|YP_003542051.1| - 0.026 13.9 0.0 0.037 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain DUF2075 PF09848.4 gi|294495558|ref|YP_003542051.1| - 0.03 13.3 0.0 0.047 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MEDS PF14417.1 gi|294495558|ref|YP_003542051.1| - 0.047 12.7 0.0 0.071 12.1 0.0 1.3 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain cobW PF02492.14 gi|294495558|ref|YP_003542051.1| - 0.061 12.7 0.4 0.13 11.6 0.1 1.7 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_32 PF13654.1 gi|294495558|ref|YP_003542051.1| - 0.099 11.2 0.0 0.19 10.3 0.0 1.4 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|294495558|ref|YP_003542051.1| - 0.11 11.3 0.0 0.17 10.6 0.0 1.2 1 0 0 1 1 1 0 ArgK protein RNA_helicase PF00910.17 gi|294495558|ref|YP_003542051.1| - 0.11 12.6 0.0 0.28 11.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.1 gi|294495558|ref|YP_003542051.1| - 0.18 11.3 0.0 0.39 10.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF1614 PF07758.6 gi|294495559|ref|YP_003542052.1| - 1.9e-26 92.8 12.8 2.6e-26 92.4 8.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) PAS_3 PF08447.6 gi|294495560|ref|YP_003542053.1| - 5.6e-33 112.9 4.8 4.6e-16 58.6 0.3 2.1 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|294495560|ref|YP_003542053.1| - 1.6e-13 50.9 1.1 3.6e-06 27.2 0.1 2.2 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|294495560|ref|YP_003542053.1| - 3.8e-07 29.8 0.3 0.0033 17.2 0.1 2.1 2 0 0 2 2 2 2 PAS fold PAS_11 PF14598.1 gi|294495560|ref|YP_003542053.1| - 0.00099 19.0 0.0 0.19 11.6 0.0 2.1 2 0 0 2 2 2 2 PAS domain Phage_T4_gp19 PF06841.7 gi|294495560|ref|YP_003542053.1| - 0.0016 18.0 0.4 0.0074 15.9 0.0 2.0 2 0 0 2 2 2 1 T4-like virus tail tube protein gp19 Rsbr_N PF08678.5 gi|294495560|ref|YP_003542053.1| - 0.034 14.0 0.0 5.5 6.8 0.0 2.3 2 0 0 2 2 2 0 Rsbr N terminal RhodobacterPufX PF11511.3 gi|294495562|ref|YP_003542055.1| - 0.034 13.5 2.3 0.034 13.5 1.6 1.5 1 1 1 2 2 2 0 Intrinsic membrane protein PufX CoxIIa PF08113.6 gi|294495563|ref|YP_003542056.1| - 0.048 13.3 0.7 0.054 13.2 0.5 1.1 1 0 0 1 1 1 0 Cytochrome c oxidase subunit IIa family Prok-JAB PF14464.1 gi|294495564|ref|YP_003542057.1| - 3.6e-11 42.5 0.0 4.8e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|294495564|ref|YP_003542057.1| - 0.031 14.0 0.0 0.067 12.9 0.0 1.6 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease DUF92 PF01940.11 gi|294495565|ref|YP_003542058.1| - 1.5e-66 223.8 18.1 1.5e-66 223.8 12.5 2.5 2 1 0 2 2 2 1 Integral membrane protein DUF92 DUF939 PF06081.6 gi|294495565|ref|YP_003542058.1| - 0.0068 16.2 25.1 0.025 14.4 8.7 3.0 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF939) Shisa PF13908.1 gi|294495565|ref|YP_003542058.1| - 0.061 13.5 1.0 0.2 11.8 0.4 2.0 1 1 0 1 1 1 0 Wnt and FGF inhibitory regulator TPR_1 PF00515.23 gi|294495566|ref|YP_003542059.1| - 1.7e-121 391.4 71.8 1.7e-10 40.0 0.0 21.8 23 0 0 23 23 23 19 Tetratricopeptide repeat TPR_11 PF13414.1 gi|294495566|ref|YP_003542059.1| - 9.1e-115 374.4 113.2 2.3e-13 49.5 1.3 14.4 5 4 12 18 18 18 18 TPR repeat TPR_2 PF07719.12 gi|294495566|ref|YP_003542059.1| - 1.8e-111 355.3 60.2 7.5e-09 34.8 0.0 22.9 22 1 1 23 23 23 18 Tetratricopeptide repeat TPR_16 PF13432.1 gi|294495566|ref|YP_003542059.1| - 6.7e-83 271.9 20.8 3.3e-08 33.9 0.0 14.9 6 4 8 16 16 16 14 Tetratricopeptide repeat TPR_8 PF13181.1 gi|294495566|ref|YP_003542059.1| - 2.4e-73 236.5 85.0 2.7e-07 29.8 0.0 22.0 17 4 5 22 22 22 16 Tetratricopeptide repeat TPR_17 PF13431.1 gi|294495566|ref|YP_003542059.1| - 3.3e-71 229.6 67.2 8.5e-06 25.5 0.0 23.6 24 0 0 24 24 23 15 Tetratricopeptide repeat TPR_14 PF13428.1 gi|294495566|ref|YP_003542059.1| - 1.9e-68 220.6 13.7 0.00066 20.0 0.0 19.8 6 6 16 22 22 21 16 Tetratricopeptide repeat TPR_12 PF13424.1 gi|294495566|ref|YP_003542059.1| - 3.7e-63 209.4 64.9 1.5e-09 37.6 0.1 14.5 5 4 13 18 18 18 17 Tetratricopeptide repeat TPR_6 PF13174.1 gi|294495566|ref|YP_003542059.1| - 4.8e-55 180.3 43.5 0.00025 21.3 0.0 22.0 23 0 0 23 23 22 11 Tetratricopeptide repeat TPR_9 PF13371.1 gi|294495566|ref|YP_003542059.1| - 2.5e-50 168.2 7.8 4.3e-06 26.4 0.1 12.2 7 2 6 13 13 13 10 Tetratricopeptide repeat TPR_19 PF14559.1 gi|294495566|ref|YP_003542059.1| - 2.2e-48 162.4 43.9 4.8e-07 30.0 0.3 13.3 7 2 7 15 15 15 12 Tetratricopeptide repeat TPR_7 PF13176.1 gi|294495566|ref|YP_003542059.1| - 1.2e-43 143.4 34.1 0.00015 21.3 0.0 17.0 17 0 0 17 17 17 10 Tetratricopeptide repeat Apc3 PF12895.2 gi|294495566|ref|YP_003542059.1| - 3.1e-37 126.5 48.2 1.2e-06 28.5 0.2 11.9 4 3 9 14 14 14 14 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.1 gi|294495566|ref|YP_003542059.1| - 6.4e-19 67.5 44.8 0.023 14.5 0.2 17.9 13 4 7 20 20 20 5 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.3 gi|294495566|ref|YP_003542059.1| - 1e-18 67.4 31.7 0.0038 16.0 0.0 9.6 3 2 7 10 10 10 8 NMDA receptor-regulated protein 1 TPR_15 PF13429.1 gi|294495566|ref|YP_003542059.1| - 7.2e-15 54.7 24.9 0.028 13.4 0.8 10.2 5 3 2 9 9 9 5 Tetratricopeptide repeat MIT PF04212.13 gi|294495566|ref|YP_003542059.1| - 5.6e-12 45.3 48.0 0.16 11.8 0.1 13.6 11 3 1 14 14 14 5 MIT (microtubule interacting and transport) domain TPR_5 PF12688.2 gi|294495566|ref|YP_003542059.1| - 2.6e-09 37.1 8.9 0.74 9.8 0.0 9.1 8 1 0 9 9 9 2 Tetratrico peptide repeat TPR_10 PF13374.1 gi|294495566|ref|YP_003542059.1| - 9.2e-08 31.7 21.1 5.3 7.1 0.1 12.1 14 0 0 14 14 12 0 Tetratricopeptide repeat DUF3856 PF12968.2 gi|294495566|ref|YP_003542059.1| - 4.2e-06 26.6 11.8 0.11 12.3 0.3 9.9 8 3 3 11 11 11 1 Domain of Unknown Function (DUF3856) Coatomer_E PF04733.9 gi|294495566|ref|YP_003542059.1| - 8.1e-06 25.2 14.9 1 8.5 0.0 7.1 4 2 4 8 8 8 2 Coatomer epsilon subunit BTAD PF03704.12 gi|294495566|ref|YP_003542059.1| - 1.1e-05 25.7 5.7 1.9 8.8 0.0 7.2 7 1 0 7 7 7 1 Bacterial transcriptional activator domain TOM20_plant PF06552.7 gi|294495566|ref|YP_003542059.1| - 0.00017 21.2 6.5 0.22 11.1 0.0 6.6 6 1 0 7 7 7 1 Plant specific mitochondrial import receptor subunit TOM20 Aida_N PF08910.5 gi|294495566|ref|YP_003542059.1| - 0.00021 21.4 6.8 8.9 6.5 0.0 5.7 6 0 0 6 6 5 0 Aida N-terminus TPR_20 PF14561.1 gi|294495566|ref|YP_003542059.1| - 0.00033 20.7 16.4 7.4 6.7 0.1 7.7 6 1 2 8 8 8 0 Tetratricopeptide repeat RPN7 PF10602.4 gi|294495566|ref|YP_003542059.1| - 0.00035 20.0 17.2 3.4 7.0 0.0 8.7 7 2 1 8 8 8 1 26S proteasome subunit RPN7 Alkyl_sulf_dimr PF14863.1 gi|294495566|ref|YP_003542059.1| - 0.0043 17.2 19.8 1.2 9.4 0.0 8.0 7 2 4 11 11 11 1 Alkyl sulfatase dimerisation TPR_3 PF07720.7 gi|294495566|ref|YP_003542059.1| - 0.017 14.8 30.3 9 6.2 0.0 12.1 14 0 0 14 14 12 0 Tetratricopeptide repeat ChAPs PF09295.5 gi|294495566|ref|YP_003542059.1| - 0.026 13.3 4.6 6.6 5.3 0.1 3.8 3 1 1 4 4 4 0 ChAPs (Chs5p-Arf1p-binding proteins) NRDE-2 PF08424.5 gi|294495566|ref|YP_003542059.1| - 0.097 11.5 8.0 1.1 8.1 0.2 4.3 3 1 0 3 3 3 0 NRDE-2, necessary for RNA interference SHNi-TPR PF10516.4 gi|294495566|ref|YP_003542059.1| - 4.3 6.6 8.9 41 3.5 0.1 5.6 6 0 0 6 6 4 0 SHNi-TPR Orn_Arg_deC_N PF02784.11 gi|294495567|ref|YP_003542060.1| - 1.5e-38 132.4 0.0 1.8e-38 132.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|294495567|ref|YP_003542060.1| - 1.2e-14 54.0 0.0 1.7e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|294495567|ref|YP_003542060.1| - 0.036 13.6 0.0 0.13 11.8 0.0 1.8 1 1 0 1 1 1 0 Alanine racemase, N-terminal domain FMN_red PF03358.10 gi|294495568|ref|YP_003542061.1| - 1.4e-17 63.6 0.0 1.8e-17 63.2 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|294495568|ref|YP_003542061.1| - 7.9e-09 35.3 0.0 8.8e-09 35.1 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold NifU_N PF01592.11 gi|294495569|ref|YP_003542062.1| - 5e-44 149.3 0.0 8.7e-44 148.5 0.0 1.4 1 0 0 1 1 1 1 NifU-like N terminal domain DUF59 PF01883.14 gi|294495569|ref|YP_003542062.1| - 4.2e-11 42.6 0.8 1.1e-10 41.3 0.2 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF59 DUF515 PF04415.7 gi|294495569|ref|YP_003542062.1| - 0.036 12.3 0.0 3.8 5.6 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF515) Aminotran_5 PF00266.14 gi|294495570|ref|YP_003542063.1| - 5.4e-76 255.7 0.1 6.8e-76 255.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|294495570|ref|YP_003542063.1| - 8.8e-07 28.2 0.1 1.5e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|294495570|ref|YP_003542063.1| - 0.00023 20.3 0.1 0.00037 19.7 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|294495570|ref|YP_003542063.1| - 0.017 14.1 0.0 0.055 12.4 0.0 1.8 2 0 0 2 2 2 0 Aminotransferase class I and II Pyridoxal_deC PF00282.14 gi|294495570|ref|YP_003542063.1| - 0.08 11.3 0.0 0.17 10.3 0.0 1.5 2 0 0 2 2 2 0 Pyridoxal-dependent decarboxylase conserved domain Defensin_3 PF08131.6 gi|294495570|ref|YP_003542063.1| - 0.095 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Defensin-like peptide family DrsE_2 PF13686.1 gi|294495571|ref|YP_003542064.1| - 2.6e-33 114.9 1.0 8.9e-33 113.1 0.7 1.7 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|294495571|ref|YP_003542064.1| - 2.4e-05 24.3 0.0 4.1e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 DsrE/DsrF-like family Fer4_NifH PF00142.13 gi|294495571|ref|YP_003542064.1| - 0.1 11.7 0.1 1.2 8.2 0.0 2.0 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family TusA PF01206.12 gi|294495572|ref|YP_003542065.1| - 6.5e-23 80.1 0.1 7.1e-23 80.0 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Gly-zipper_OmpA PF13436.1 gi|294495573|ref|YP_003542066.1| - 0.0072 15.9 1.6 0.0097 15.5 1.1 1.2 1 0 0 1 1 1 1 Glycine-zipper containing OmpA-like membrane domain Gly-zipper_Omp PF13488.1 gi|294495573|ref|YP_003542066.1| - 0.031 13.9 8.5 0.067 12.8 5.9 1.6 1 1 0 1 1 1 0 Glycine zipper DUF202 PF02656.10 gi|294495573|ref|YP_003542066.1| - 0.094 12.9 0.3 0.17 12.1 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF202) cobW PF02492.14 gi|294495574|ref|YP_003542067.1| - 3.1e-39 134.2 2.1 5.9e-39 133.3 1.4 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.17 gi|294495574|ref|YP_003542067.1| - 0.00021 20.8 0.5 0.00051 19.5 0.4 1.7 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain ArgK PF03308.11 gi|294495574|ref|YP_003542067.1| - 0.0019 17.0 7.6 0.042 12.6 0.4 2.8 3 0 0 3 3 3 2 ArgK protein MobB PF03205.9 gi|294495574|ref|YP_003542067.1| - 0.003 17.2 2.5 0.0038 16.9 0.5 2.1 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|294495574|ref|YP_003542067.1| - 0.0065 15.4 0.5 0.014 14.3 0.4 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|294495574|ref|YP_003542067.1| - 0.032 14.5 3.9 0.25 11.6 0.2 2.8 2 1 0 2 2 2 0 AAA domain DUF4371 PF14291.1 gi|294495574|ref|YP_003542067.1| - 0.043 13.3 1.3 0.065 12.7 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4371) DUF3855 PF12967.2 gi|294495574|ref|YP_003542067.1| - 0.067 12.7 0.3 0.21 11.1 0.0 1.9 2 0 0 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3855) Ras PF00071.17 gi|294495574|ref|YP_003542067.1| - 0.075 12.4 0.1 0.075 12.4 0.1 2.4 3 0 0 3 3 3 0 Ras family AAA_19 PF13245.1 gi|294495574|ref|YP_003542067.1| - 0.14 11.8 0.1 0.35 10.6 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain ATP_bind_1 PF03029.12 gi|294495574|ref|YP_003542067.1| - 0.36 10.3 3.6 1.3 8.5 0.1 2.6 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_17 PF13207.1 gi|294495574|ref|YP_003542067.1| - 0.86 10.4 3.0 2.2 9.1 2.1 2.1 1 1 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|294495574|ref|YP_003542067.1| - 1.8 7.9 5.3 0.42 10.0 0.5 2.2 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain URO-D PF01208.12 gi|294495575|ref|YP_003542068.1| - 2.3e-71 240.5 0.4 2.6e-71 240.3 0.3 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) NSP11 PF06471.7 gi|294495575|ref|YP_003542068.1| - 0.12 10.5 0.0 0.19 9.8 0.0 1.2 1 0 0 1 1 1 0 NSP11 AA_permease_2 PF13520.1 gi|294495576|ref|YP_003542069.1| - 1.2e-47 162.4 54.8 1.9e-47 161.7 38.0 1.3 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|294495576|ref|YP_003542069.1| - 1.8e-45 155.2 46.6 2.5e-45 154.7 32.3 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|294495576|ref|YP_003542069.1| - 4.1e-30 104.7 0.1 5.5e-20 71.9 0.0 2.6 2 1 0 2 2 2 2 Universal stress protein family AA_permease_C PF13906.1 gi|294495576|ref|YP_003542069.1| - 1.1e-05 25.1 5.2 1.1e-05 25.1 3.6 3.4 4 0 0 4 4 4 1 C-terminus of AA_permease S1FA PF04689.8 gi|294495576|ref|YP_003542069.1| - 0.15 11.9 0.1 0.15 11.9 0.1 2.8 3 0 0 3 3 3 0 DNA binding protein S1FA YfhO PF09586.5 gi|294495576|ref|YP_003542069.1| - 5 5.0 13.8 0.0078 14.2 1.4 1.9 2 0 0 2 2 2 0 Bacterial membrane protein YfhO GP41 PF00517.12 gi|294495577|ref|YP_003542070.1| - 0.0015 18.1 0.1 0.0042 16.6 0.0 1.7 1 0 0 1 1 1 1 Retroviral envelope protein PE PF00934.15 gi|294495577|ref|YP_003542070.1| - 0.013 15.5 0.0 0.068 13.2 0.0 2.2 1 0 0 1 1 1 0 PE family Fusion_gly PF00523.13 gi|294495577|ref|YP_003542070.1| - 0.022 12.8 0.1 0.047 11.7 0.1 1.5 1 0 0 1 1 1 0 Fusion glycoprotein F0 ApoLp-III PF07464.6 gi|294495577|ref|YP_003542070.1| - 0.022 14.7 0.6 0.022 14.7 0.4 3.0 3 1 0 3 3 3 0 Apolipophorin-III precursor (apoLp-III) XhlA PF10779.4 gi|294495577|ref|YP_003542070.1| - 0.068 13.0 0.0 0.068 13.0 0.0 3.1 4 1 0 4 4 4 0 Haemolysin XhlA DUF1664 PF07889.7 gi|294495577|ref|YP_003542070.1| - 0.2 11.4 0.1 0.2 11.4 0.1 2.9 3 2 0 3 3 3 0 Protein of unknown function (DUF1664) DUF883 PF05957.8 gi|294495577|ref|YP_003542070.1| - 0.25 11.7 0.1 0.25 11.7 0.1 3.1 4 0 0 4 4 3 0 Bacterial protein of unknown function (DUF883) NYD-SP28 PF14772.1 gi|294495577|ref|YP_003542070.1| - 0.28 11.2 5.4 0.21 11.6 0.1 3.2 3 0 0 3 3 3 0 Sperm tail Muted PF14942.1 gi|294495577|ref|YP_003542070.1| - 0.55 10.0 8.8 0.7 9.7 0.3 3.4 3 0 0 3 3 3 0 Organelle biogenesis, Muted-like protein DUF1395 PF07160.7 gi|294495577|ref|YP_003542070.1| - 3.3 7.1 8.0 6.2 6.2 0.2 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1395) FliT PF05400.8 gi|294495577|ref|YP_003542070.1| - 3.9 7.9 11.2 0.22 11.9 0.2 3.6 3 1 1 4 4 4 0 Flagellar protein FliT Pox_A14 PF05767.7 gi|294495579|ref|YP_003542072.1| - 0.12 12.3 0.6 0.24 11.4 0.4 1.5 1 0 0 1 1 1 0 Poxvirus virion envelope protein A14 Colicin_V PF02674.11 gi|294495579|ref|YP_003542072.1| - 0.14 11.9 3.1 0.93 9.3 2.1 2.1 1 1 0 1 1 1 0 Colicin V production protein MFS_1 PF07690.11 gi|294495580|ref|YP_003542073.1| - 1.2e-54 185.4 53.6 3.6e-53 180.5 30.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|294495580|ref|YP_003542073.1| - 5.3e-16 58.2 35.9 8.2e-11 41.1 11.5 3.2 2 1 1 3 3 3 3 Sugar (and other) transporter MFS_2 PF13347.1 gi|294495580|ref|YP_003542073.1| - 1e-09 37.3 36.0 2.6e-08 32.6 11.9 2.1 1 1 1 2 2 2 2 MFS/sugar transport protein TRI12 PF06609.8 gi|294495580|ref|YP_003542073.1| - 0.00011 20.5 6.7 0.00011 20.5 4.6 2.1 1 1 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) BT1 PF03092.11 gi|294495580|ref|YP_003542073.1| - 0.00068 18.4 5.1 0.00068 18.4 3.5 2.6 2 1 1 3 3 3 1 BT1 family OATP PF03137.15 gi|294495580|ref|YP_003542073.1| - 0.66 7.9 26.0 0.018 13.0 2.3 3.9 3 1 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family HATPase_c PF02518.21 gi|294495581|ref|YP_003542074.1| - 2.4e-26 91.6 0.2 5.2e-26 90.5 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|294495581|ref|YP_003542074.1| - 2.8e-08 33.6 0.0 6.2e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|294495581|ref|YP_003542074.1| - 4.1e-08 33.5 0.2 1.3e-07 31.8 0.1 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.1 gi|294495581|ref|YP_003542074.1| - 5.6e-07 29.2 0.5 5.6e-07 29.2 0.3 2.1 2 0 0 2 2 2 1 GHKL domain PAS PF00989.19 gi|294495581|ref|YP_003542074.1| - 8.7e-07 28.7 0.2 4.5e-06 26.4 0.1 2.3 2 1 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|294495581|ref|YP_003542074.1| - 0.00017 21.2 0.1 0.00038 20.1 0.1 1.6 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|294495581|ref|YP_003542074.1| - 0.0007 19.6 0.0 0.0025 17.8 0.0 1.9 1 1 0 1 1 1 1 PAS fold SPOB_a PF14689.1 gi|294495581|ref|YP_003542074.1| - 0.0035 16.8 2.0 0.0059 16.1 0.6 2.1 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_7 PF12860.2 gi|294495581|ref|YP_003542074.1| - 0.024 14.6 0.8 0.039 13.9 0.0 1.8 2 0 0 2 2 2 0 PAS fold FTA4 PF13093.1 gi|294495581|ref|YP_003542074.1| - 0.16 11.3 2.7 0.17 11.2 0.4 2.0 2 0 0 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DUF3964 PF13107.1 gi|294495582|ref|YP_003542075.1| - 0.11 12.7 1.7 0.12 12.6 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3964) B12-binding PF02310.14 gi|294495583|ref|YP_003542076.1| - 1.9e-18 66.4 0.0 3e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|294495583|ref|YP_003542076.1| - 1.6e-14 53.6 0.0 3.4e-14 52.6 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain PAS_9 PF13426.1 gi|294495584|ref|YP_003542077.1| - 2.9e-26 91.8 0.0 2.6e-12 47.0 0.0 4.4 4 0 0 4 4 4 4 PAS domain PAS_4 PF08448.5 gi|294495584|ref|YP_003542077.1| - 1.7e-23 82.7 0.0 1.1e-07 31.8 0.0 5.3 5 1 0 5 5 5 4 PAS fold PAS PF00989.19 gi|294495584|ref|YP_003542077.1| - 2.4e-22 78.8 0.1 5.1e-14 52.0 0.0 4.7 5 0 0 5 5 5 2 PAS fold PAS_8 PF13188.1 gi|294495584|ref|YP_003542077.1| - 1.6e-16 59.4 0.0 1e-09 37.8 0.0 4.0 4 0 0 4 4 4 2 PAS domain PAS_3 PF08447.6 gi|294495584|ref|YP_003542077.1| - 7.9e-13 48.3 0.0 6.1e-05 23.0 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_7 PF12860.2 gi|294495584|ref|YP_003542077.1| - 0.0068 16.3 0.5 3.3 7.7 0.0 4.2 4 1 0 5 5 5 1 PAS fold RNaseH_C PF09293.5 gi|294495584|ref|YP_003542077.1| - 0.062 13.2 0.4 0.88 9.4 0.0 2.3 2 0 0 2 2 2 0 T4 RNase H, C terminal HATPase_c PF02518.21 gi|294495585|ref|YP_003542078.1| - 1.4e-33 114.9 0.0 2.8e-33 113.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|294495585|ref|YP_003542078.1| - 4.8e-21 74.5 0.4 7.2e-20 70.7 0.0 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|294495585|ref|YP_003542078.1| - 1.8e-19 70.6 0.0 8.9e-16 58.7 0.0 2.3 2 0 0 2 2 2 2 GAF domain PAS_9 PF13426.1 gi|294495585|ref|YP_003542078.1| - 1.7e-14 54.0 0.1 1.3e-13 51.2 0.0 2.6 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.1 gi|294495585|ref|YP_003542078.1| - 8.4e-14 51.7 0.0 3.9e-09 36.6 0.0 2.4 2 0 0 2 2 2 2 GAF domain PAS_3 PF08447.6 gi|294495585|ref|YP_003542078.1| - 3.7e-08 33.3 0.0 1.3e-07 31.5 0.0 2.0 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|294495585|ref|YP_003542078.1| - 5.4e-08 32.6 0.0 1.4e-07 31.2 0.0 1.8 1 0 0 1 1 1 1 PAS fold GAF PF01590.21 gi|294495585|ref|YP_003542078.1| - 2.2e-05 24.6 0.0 0.00011 22.4 0.0 2.2 3 1 0 3 3 3 1 GAF domain PAS_8 PF13188.1 gi|294495585|ref|YP_003542078.1| - 4.1e-05 23.2 0.0 0.00013 21.6 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|294495585|ref|YP_003542078.1| - 0.00071 19.2 0.0 0.002 17.8 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|294495585|ref|YP_003542078.1| - 0.0011 18.6 0.2 0.0089 15.7 0.0 2.6 2 1 1 3 3 2 1 GHKL domain PAS_4 PF08448.5 gi|294495585|ref|YP_003542078.1| - 0.012 15.6 0.0 0.058 13.4 0.0 2.2 2 0 0 2 2 2 0 PAS fold Cofilin_ADF PF00241.15 gi|294495585|ref|YP_003542078.1| - 0.018 14.8 0.5 0.075 12.9 0.0 2.4 2 0 0 2 2 2 0 Cofilin/tropomyosin-type actin-binding protein HATPase_c_2 PF13581.1 gi|294495585|ref|YP_003542078.1| - 0.076 12.8 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Methyltransf_31 PF13847.1 gi|294495588|ref|YP_003542081.1| - 7.4e-20 71.0 0.0 8.8e-20 70.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|294495588|ref|YP_003542081.1| - 1.8e-16 60.3 0.0 2.4e-16 59.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|294495588|ref|YP_003542081.1| - 2e-15 57.0 0.1 2.6e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|294495588|ref|YP_003542081.1| - 3.9e-11 42.5 0.0 4.7e-11 42.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|294495588|ref|YP_003542081.1| - 1.9e-10 40.6 0.0 2.5e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|294495588|ref|YP_003542081.1| - 2.2e-10 41.0 0.1 2.9e-10 40.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|294495588|ref|YP_003542081.1| - 2.4e-08 34.2 0.0 3.3e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|294495588|ref|YP_003542081.1| - 6.3e-07 28.5 0.0 7.4e-07 28.3 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin MTS PF05175.9 gi|294495588|ref|YP_003542081.1| - 1.4e-05 24.5 0.0 1.8e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|294495588|ref|YP_003542081.1| - 4.5e-05 23.4 0.0 5.9e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.13 gi|294495588|ref|YP_003542081.1| - 6.3e-05 22.2 0.0 8e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|294495588|ref|YP_003542081.1| - 6.4e-05 23.7 0.0 0.00011 22.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|294495588|ref|YP_003542081.1| - 0.00011 21.7 0.0 0.00013 21.3 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_5 PF01795.14 gi|294495588|ref|YP_003542081.1| - 0.00027 20.3 0.0 0.00032 20.0 0.0 1.2 1 0 0 1 1 1 1 MraW methylase family PCMT PF01135.14 gi|294495588|ref|YP_003542081.1| - 0.00042 19.9 0.0 0.00062 19.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CheR PF01739.13 gi|294495588|ref|YP_003542081.1| - 0.00059 19.1 0.6 0.002 17.4 0.2 1.8 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain Methyltransf_PK PF05891.7 gi|294495588|ref|YP_003542081.1| - 0.0016 17.7 0.0 0.0021 17.3 0.0 1.1 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase Rsm22 PF09243.5 gi|294495588|ref|YP_003542081.1| - 0.0029 16.7 0.0 0.0036 16.3 0.0 1.1 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 CMAS PF02353.15 gi|294495588|ref|YP_003542081.1| - 0.0033 16.5 0.0 0.004 16.2 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|294495588|ref|YP_003542081.1| - 0.0068 16.0 0.0 0.009 15.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|294495588|ref|YP_003542081.1| - 0.0092 15.0 0.0 0.096 11.7 0.0 2.0 1 1 0 1 1 1 1 Putative methyltransferase DUF3052 PF11253.3 gi|294495588|ref|YP_003542081.1| - 0.015 14.9 0.0 0.02 14.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3052) GidB PF02527.10 gi|294495588|ref|YP_003542081.1| - 0.058 12.5 0.0 0.086 11.9 0.0 1.4 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G RrnaAD PF00398.15 gi|294495588|ref|YP_003542081.1| - 0.06 12.3 0.0 0.074 12.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase FMN_red PF03358.10 gi|294495589|ref|YP_003542082.1| - 5.1e-23 81.2 0.0 6.4e-23 80.9 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|294495589|ref|YP_003542082.1| - 6e-12 45.4 0.0 7.2e-12 45.2 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|294495589|ref|YP_003542082.1| - 0.001 19.0 0.0 0.0019 18.2 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain Erythro-docking PF09277.6 gi|294495589|ref|YP_003542082.1| - 0.11 12.2 0.1 0.21 11.3 0.1 1.4 1 0 0 1 1 1 0 Erythronolide synthase, docking Spore_YtfJ PF09579.5 gi|294495590|ref|YP_003542083.1| - 8.6e-30 102.4 3.6 1.3e-29 101.8 2.5 1.3 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) DUF3740 PF12548.3 gi|294495590|ref|YP_003542083.1| - 0.0071 16.6 0.2 0.011 15.9 0.1 1.3 1 0 0 1 1 1 1 Sulfatase protein DUF2953 PF11167.3 gi|294495591|ref|YP_003542084.1| - 5e-08 32.7 0.0 8.8e-08 31.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2953) Cupredoxin_1 PF13473.1 gi|294495592|ref|YP_003542085.1| - 2e-12 46.9 0.1 2.4e-12 46.6 0.1 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|294495592|ref|YP_003542085.1| - 1.5e-11 44.3 1.3 2.4e-09 37.2 0.9 2.2 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family PKD PF00801.15 gi|294495592|ref|YP_003542085.1| - 0.0059 16.3 6.2 0.27 11.0 1.0 2.3 1 1 1 2 2 2 2 PKD domain DUF4097 PF13349.1 gi|294495592|ref|YP_003542085.1| - 0.038 13.5 0.2 0.049 13.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4097) DUF3290 PF11694.3 gi|294495592|ref|YP_003542085.1| - 0.072 12.8 0.1 0.085 12.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3290) CCG PF02754.11 gi|294495593|ref|YP_003542086.1| - 1.3e-20 73.1 2.1 1.9e-11 43.8 0.0 2.7 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|294495593|ref|YP_003542086.1| - 5.1e-11 42.4 2.6 5.1e-11 42.4 1.8 2.3 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294495593|ref|YP_003542086.1| - 4.4e-09 36.9 3.5 4.4e-09 36.9 2.4 2.2 3 0 0 3 3 1 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|294495593|ref|YP_003542086.1| - 9.4e-09 35.5 2.1 9.4e-09 35.5 1.5 2.5 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294495593|ref|YP_003542086.1| - 1.3e-07 31.8 3.7 1.3e-07 31.8 2.5 2.5 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294495593|ref|YP_003542086.1| - 6e-07 29.1 5.6 6e-07 29.1 3.9 2.8 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294495593|ref|YP_003542086.1| - 2.3e-06 27.7 19.3 8.3e-06 25.9 5.8 3.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294495593|ref|YP_003542086.1| - 2.6e-05 24.5 11.5 0.021 15.2 0.1 3.4 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294495593|ref|YP_003542086.1| - 0.00059 19.6 10.8 0.0034 17.2 1.3 3.2 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294495593|ref|YP_003542086.1| - 0.002 17.9 2.5 0.002 17.9 1.7 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|294495593|ref|YP_003542086.1| - 0.0021 18.2 2.4 0.0021 18.2 1.6 4.6 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294495593|ref|YP_003542086.1| - 0.0025 17.5 3.3 0.0025 17.5 2.3 3.6 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4 PF00037.22 gi|294495593|ref|YP_003542086.1| - 0.0033 16.9 13.4 0.0052 16.3 2.4 3.7 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|294495593|ref|YP_003542086.1| - 0.091 13.3 1.2 0.091 13.3 0.8 4.5 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|294495593|ref|YP_003542086.1| - 0.42 10.2 4.5 7.9 6.1 0.1 2.6 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PK PF00224.16 gi|294495594|ref|YP_003542087.1| - 3.2e-120 400.8 0.0 4.3e-120 400.5 0.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|294495594|ref|YP_003542087.1| - 7e-23 80.4 0.0 1.5e-22 79.3 0.0 1.6 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|294495594|ref|YP_003542087.1| - 5.3e-06 25.4 0.3 2.7e-05 23.1 0.1 2.0 1 1 1 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family IF2_N PF04760.10 gi|294495594|ref|YP_003542087.1| - 0.022 14.4 0.5 7.5 6.3 0.0 3.8 4 0 0 4 4 4 0 Translation initiation factor IF-2, N-terminal region Sex_peptide PF08138.6 gi|294495595|ref|YP_003542088.1| - 0.19 11.5 1.9 7.4 6.5 0.1 2.1 1 1 1 2 2 2 0 Sex peptide (SP) family ATP_bind_4 PF01902.12 gi|294495596|ref|YP_003542089.1| - 3.4e-66 222.7 1.5 4.5e-64 215.8 0.2 2.3 2 0 0 2 2 2 2 ATP-binding region Asn_synthase PF00733.16 gi|294495596|ref|YP_003542089.1| - 4.1e-42 144.4 0.0 1.9e-39 135.6 0.0 2.9 2 1 0 2 2 2 2 Asparagine synthase NAD_synthase PF02540.12 gi|294495596|ref|YP_003542089.1| - 2.3e-06 26.6 0.0 5.2e-06 25.5 0.0 1.6 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|294495596|ref|YP_003542089.1| - 1.7e-05 23.5 0.0 0.0014 17.2 0.0 2.9 3 0 0 3 3 3 1 tRNA methyl transferase GATase_7 PF13537.1 gi|294495596|ref|YP_003542089.1| - 0.00012 21.8 0.0 0.00027 20.6 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain QueC PF06508.8 gi|294495596|ref|YP_003542089.1| - 0.0012 18.1 0.0 0.033 13.4 0.0 2.8 3 0 0 3 3 3 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|294495596|ref|YP_003542089.1| - 0.033 13.7 0.1 0.099 12.1 0.0 1.9 2 0 0 2 2 2 0 PP-loop family Hydrolase_3 PF08282.7 gi|294495597|ref|YP_003542090.1| - 3.7e-17 62.7 0.0 7.8e-17 61.6 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|294495597|ref|YP_003542090.1| - 1.4e-05 24.5 0.0 0.0022 17.3 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|294495597|ref|YP_003542090.1| - 2.6e-05 24.4 1.5 0.0036 17.4 1.1 2.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|294495597|ref|YP_003542090.1| - 0.00014 21.7 0.0 0.00024 20.9 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|294495597|ref|YP_003542090.1| - 0.037 14.2 0.1 2.5 8.2 0.1 2.4 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase Pec_lyase PF09492.5 gi|294495599|ref|YP_003542092.1| - 0.0019 17.4 0.2 0.017 14.2 0.0 2.1 1 1 1 2 2 2 1 Pectic acid lyase Glyco_hydro_15 PF00723.16 gi|294495599|ref|YP_003542092.1| - 0.02 13.4 0.1 0.041 12.4 0.1 1.6 1 1 0 1 1 1 0 Glycosyl hydrolases family 15 Prenyltrans_1 PF13243.1 gi|294495599|ref|YP_003542092.1| - 0.024 14.6 0.0 0.18 11.8 0.0 2.6 2 1 0 2 2 2 0 Prenyltransferase-like Prenyltrans_2 PF13249.1 gi|294495599|ref|YP_003542092.1| - 0.046 14.1 0.1 3.8 7.9 0.0 3.0 1 1 2 3 3 3 0 Prenyltransferase-like RuBisCO_large PF00016.15 gi|294495600|ref|YP_003542093.1| - 3.5e-78 262.5 0.0 1.1e-59 201.8 0.0 2.1 1 1 1 2 2 2 2 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|294495600|ref|YP_003542093.1| - 3.6e-23 81.6 0.0 6.8e-23 80.7 0.0 1.4 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain DEAD_assoc PF08494.6 gi|294495601|ref|YP_003542094.1| - 5.4e-41 140.3 0.0 1e-40 139.5 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|294495601|ref|YP_003542094.1| - 1.3e-34 119.1 0.0 4.1e-34 117.4 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|294495601|ref|YP_003542094.1| - 3.9e-18 65.0 0.4 3e-16 59.0 0.0 3.0 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|294495601|ref|YP_003542094.1| - 1.4e-08 34.7 0.0 2.8e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|294495601|ref|YP_003542094.1| - 1.9e-07 30.2 0.1 1.7e-06 27.0 0.0 2.2 2 0 0 2 2 2 1 SNF2 family N-terminal domain CcmH PF03918.9 gi|294495601|ref|YP_003542094.1| - 0.12 11.3 0.2 0.58 9.1 0.0 2.2 2 0 0 2 2 2 0 Cytochrome C biogenesis protein Metallophos PF00149.23 gi|294495602|ref|YP_003542095.1| - 1.6e-05 24.3 1.9 2.2e-05 23.9 1.3 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|294495602|ref|YP_003542095.1| - 0.00027 20.8 0.0 0.0003 20.6 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF95 PF01944.12 gi|294495603|ref|YP_003542096.1| - 0.00016 21.3 0.4 0.0002 21.0 0.3 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 Ndc1_Nup PF09531.5 gi|294495603|ref|YP_003542096.1| - 0.00034 19.1 1.9 0.00041 18.9 1.3 1.1 1 0 0 1 1 1 1 Nucleoporin protein Ndc1-Nup Pex24p PF06398.6 gi|294495603|ref|YP_003542096.1| - 0.0028 16.5 0.0 0.004 16.0 0.0 1.2 1 0 0 1 1 1 1 Integral peroxisomal membrane peroxin Matrilin_ccoil PF10393.4 gi|294495603|ref|YP_003542096.1| - 0.053 12.8 0.2 0.083 12.2 0.1 1.3 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin Vps51 PF08700.6 gi|294495603|ref|YP_003542096.1| - 0.079 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Vps51/Vps67 Tetraspannin PF00335.15 gi|294495603|ref|YP_003542096.1| - 0.085 12.1 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 Tetraspanin family ABC2_membrane_4 PF12730.2 gi|294495603|ref|YP_003542096.1| - 0.089 11.9 5.4 0.11 11.6 3.7 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3096 PF11295.3 gi|294495603|ref|YP_003542096.1| - 0.27 10.7 0.1 0.27 10.7 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3096) Fig1 PF12351.3 gi|294495603|ref|YP_003542096.1| - 0.38 10.6 2.4 0.33 10.7 0.9 1.3 1 1 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 ANF_receptor PF01094.23 gi|294495604|ref|YP_003542097.1| - 6.1e-27 94.3 0.1 1e-26 93.5 0.1 1.4 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_6 PF13458.1 gi|294495604|ref|YP_003542097.1| - 5.8e-25 88.3 0.5 3e-24 86.0 0.3 1.8 1 1 0 1 1 1 1 Periplasmic binding protein Peripla_BP_4 PF13407.1 gi|294495604|ref|YP_003542097.1| - 0.031 13.6 1.3 0.075 12.3 0.9 1.5 1 1 0 1 1 1 0 Periplasmic binding protein domain Amidohydro_4 PF13147.1 gi|294495604|ref|YP_003542097.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase CoA_binding_2 PF13380.1 gi|294495604|ref|YP_003542097.1| - 0.13 12.3 0.0 0.42 10.7 0.0 1.8 1 0 0 1 1 1 0 CoA binding domain Ala_racemase_N PF01168.15 gi|294495605|ref|YP_003542098.1| - 1.3e-44 152.4 0.0 1.5e-44 152.2 0.0 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Orn_Arg_deC_N PF02784.11 gi|294495605|ref|YP_003542098.1| - 0.055 12.6 0.0 0.086 12.0 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PPR PF01535.15 gi|294495605|ref|YP_003542098.1| - 0.058 13.4 0.0 16 5.7 0.2 3.3 3 0 0 3 3 3 0 PPR repeat TPP_enzyme_N PF02776.13 gi|294495606|ref|YP_003542099.1| - 5.9e-47 159.3 0.0 6.8e-46 155.8 0.0 2.3 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|294495606|ref|YP_003542099.1| - 1.9e-34 118.4 0.0 4.8e-34 117.1 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|294495606|ref|YP_003542099.1| - 6.7e-26 90.6 0.2 1.6e-25 89.4 0.1 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Rubredoxin PF00301.15 gi|294495606|ref|YP_003542099.1| - 1.7e-12 46.9 4.1 3.4e-12 46.0 2.9 1.5 1 0 0 1 1 1 1 Rubredoxin XFP_N PF09364.5 gi|294495606|ref|YP_003542099.1| - 0.069 11.6 0.0 0.12 10.9 0.0 1.2 1 0 0 1 1 1 0 XFP N-terminal domain zf-HIT PF04438.11 gi|294495606|ref|YP_003542099.1| - 0.67 9.6 3.5 14 5.4 0.1 2.3 2 0 0 2 2 2 0 HIT zinc finger HK PF02110.10 gi|294495608|ref|YP_003542101.1| - 8.9e-83 277.2 4.6 1e-82 277.0 3.2 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|294495608|ref|YP_003542101.1| - 4.3e-10 39.1 1.5 5.2e-10 38.9 1.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|294495608|ref|YP_003542101.1| - 8.7e-06 25.1 0.8 1.1e-05 24.8 0.5 1.1 1 0 0 1 1 1 1 Carbohydrate kinase PfkB PF00294.19 gi|294495608|ref|YP_003542101.1| - 0.0011 18.1 0.0 0.0014 17.7 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase UPF0004 PF00919.15 gi|294495608|ref|YP_003542101.1| - 0.078 12.8 0.1 0.2 11.4 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein family UPF0004 TMP-TENI PF02581.12 gi|294495609|ref|YP_003542102.1| - 1.9e-62 209.5 1.3 2.3e-62 209.3 0.9 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI Ribul_P_3_epim PF00834.14 gi|294495609|ref|YP_003542102.1| - 0.0013 17.8 0.3 0.0031 16.6 0.2 1.6 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family DUF377 PF04041.8 gi|294495609|ref|YP_003542102.1| - 0.014 14.1 0.0 0.021 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF377) NMO PF03060.10 gi|294495609|ref|YP_003542102.1| - 0.024 13.7 0.9 0.95 8.5 0.1 2.1 2 0 0 2 2 2 0 Nitronate monooxygenase Oxidored_FMN PF00724.15 gi|294495609|ref|YP_003542102.1| - 0.026 13.5 0.6 0.13 11.1 0.1 1.9 1 1 1 2 2 2 0 NADH:flavin oxidoreductase / NADH oxidase family ATP_bind_3 PF01171.15 gi|294495611|ref|YP_003542104.1| - 1.8e-15 56.8 0.0 2.5e-15 56.4 0.0 1.2 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|294495611|ref|YP_003542104.1| - 7.8e-09 34.5 0.0 1.2e-08 33.9 0.0 1.4 1 1 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|294495611|ref|YP_003542104.1| - 5.9e-06 25.9 0.0 8e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.14 gi|294495611|ref|YP_003542104.1| - 1e-05 25.4 0.0 1.8e-05 24.6 0.0 1.4 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.8 gi|294495611|ref|YP_003542104.1| - 0.0032 16.7 0.0 0.0057 15.9 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|294495611|ref|YP_003542104.1| - 0.031 13.1 0.0 0.048 12.5 0.0 1.3 1 1 0 1 1 1 0 NAD synthase NYN PF01936.13 gi|294495612|ref|YP_003542105.1| - 6.5e-35 120.5 0.1 7.7e-35 120.3 0.1 1.0 1 0 0 1 1 1 1 NYN domain TPP_enzyme_C PF02775.16 gi|294495612|ref|YP_003542105.1| - 0.028 13.9 0.1 0.071 12.6 0.0 1.7 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NosD PF05048.8 gi|294495613|ref|YP_003542106.1| - 5.2e-42 143.6 31.2 5.2e-42 143.6 21.6 1.9 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|294495613|ref|YP_003542106.1| - 3e-07 30.3 37.1 4.1e-06 26.6 21.7 2.5 2 1 0 2 2 2 2 Right handed beta helix region Pectinesterase PF01095.14 gi|294495613|ref|YP_003542106.1| - 1.5e-05 23.7 1.4 2.3e-05 23.1 0.9 1.3 1 0 0 1 1 1 1 Pectinesterase DUF1565 PF07602.6 gi|294495613|ref|YP_003542106.1| - 9.5e-05 21.6 15.8 0.04 13.0 10.9 3.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1565) DUF4380 PF14315.1 gi|294495613|ref|YP_003542106.1| - 0.024 13.8 0.0 0.13 11.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4380) DUF11 PF01345.13 gi|294495613|ref|YP_003542106.1| - 0.16 12.0 4.6 0.52 10.3 0.5 3.0 2 0 0 2 2 2 0 Domain of unknown function DUF11 Virul_fac_BrkB PF03631.10 gi|294495615|ref|YP_003542108.1| - 6.4e-44 150.2 24.7 7.6e-44 150.0 17.1 1.0 1 0 0 1 1 1 1 Virulence factor BrkB Phi-29_GP4 PF05464.6 gi|294495616|ref|YP_003542109.1| - 0.063 13.1 0.2 0.073 12.9 0.1 1.1 1 0 0 1 1 1 0 Phi-29-like late genes activator (early protein GP4) PLDc_N PF13396.1 gi|294495617|ref|YP_003542110.1| - 2.5e-12 46.2 5.3 2.5e-12 46.2 3.7 1.3 1 1 0 1 1 1 1 Phospholipase_D-nuclease N-terminal DUF2878 PF11086.3 gi|294495617|ref|YP_003542110.1| - 0.0074 16.2 2.3 0.0083 16.1 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2878) Arif-1 PF06770.6 gi|294495617|ref|YP_003542110.1| - 0.022 14.1 1.4 0.024 14.0 1.0 1.0 1 0 0 1 1 1 0 Actin-rearrangement-inducing factor (Arif-1) Polysacc_synt PF01943.12 gi|294495617|ref|YP_003542110.1| - 0.022 14.0 0.8 0.023 13.9 0.5 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Apq12 PF12716.2 gi|294495617|ref|YP_003542110.1| - 0.031 13.9 8.3 0.037 13.7 5.8 1.1 1 0 0 1 1 1 0 Nuclear pore assembly and biogenesis YbjM PF11045.3 gi|294495617|ref|YP_003542110.1| - 0.04 13.6 1.3 0.045 13.5 0.9 1.1 1 0 0 1 1 1 0 Putative inner membrane protein of Enterobacteriaceae DUF2568 PF10823.3 gi|294495617|ref|YP_003542110.1| - 0.053 13.7 1.3 0.059 13.6 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2568) DUF2569 PF10754.4 gi|294495617|ref|YP_003542110.1| - 0.062 13.5 2.4 0.064 13.4 1.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2569) DUF2074 PF09847.4 gi|294495617|ref|YP_003542110.1| - 0.085 11.6 1.9 0.09 11.5 1.3 1.0 1 0 0 1 1 1 0 Predicted permease (DUF2074) Arteri_Gl PF00951.13 gi|294495617|ref|YP_003542110.1| - 0.16 11.5 2.2 0.4 10.2 0.1 1.9 1 1 1 2 2 2 0 Arterivirus GL envelope glycoprotein COX15-CtaA PF02628.10 gi|294495617|ref|YP_003542110.1| - 0.29 9.9 3.2 0.3 9.9 2.2 1.0 1 0 0 1 1 1 0 Cytochrome oxidase assembly protein BCD PF15461.1 gi|294495617|ref|YP_003542110.1| - 0.31 10.4 3.4 0.34 10.2 2.3 1.0 1 0 0 1 1 1 0 Beta-carotene 15,15'-dioxygenase UPF0182 PF03699.8 gi|294495617|ref|YP_003542110.1| - 1.2 7.0 3.5 1.2 6.9 2.4 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) DUF1056 PF06341.6 gi|294495617|ref|YP_003542110.1| - 2.3 8.2 6.6 9.1 6.3 0.7 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1056) MFS_1 PF07690.11 gi|294495618|ref|YP_003542111.1| - 1.2e-54 185.3 37.1 2.6e-29 102.0 12.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|294495618|ref|YP_003542111.1| - 7.2e-09 34.5 19.3 3.8e-06 25.5 3.8 2.2 1 1 1 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|294495618|ref|YP_003542111.1| - 4.4e-06 25.5 34.9 0.00019 20.1 7.8 3.2 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|294495618|ref|YP_003542111.1| - 0.00051 18.2 23.6 0.0023 16.1 14.9 2.0 1 1 1 2 2 2 2 Transmembrane secretion effector DUF4131 PF13567.1 gi|294495618|ref|YP_003542111.1| - 0.66 9.3 6.7 0.7 9.2 0.0 3.4 3 1 1 4 4 4 0 Domain of unknown function (DUF4131) UbiA PF01040.13 gi|294495619|ref|YP_003542112.1| - 1.8e-17 63.4 14.5 2.4e-17 63.0 10.0 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family AMP-binding_C_2 PF14535.1 gi|294495620|ref|YP_003542113.1| - 3e-30 104.1 0.7 6.5e-30 103.0 0.5 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|294495620|ref|YP_003542113.1| - 2e-21 75.8 0.0 4.3e-21 74.7 0.0 1.5 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|294495620|ref|YP_003542113.1| - 0.00017 20.3 0.0 0.0014 17.4 0.0 2.0 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE DUF2099 PF09872.4 gi|294495621|ref|YP_003542114.1| - 6.1e-113 376.1 0.5 6.9e-113 375.9 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) Thr_synth_N PF14821.1 gi|294495621|ref|YP_003542114.1| - 0.13 12.3 0.0 0.59 10.1 0.0 1.9 2 0 0 2 2 2 0 Threonine synthase N terminus Molydop_binding PF01568.16 gi|294495622|ref|YP_003542115.1| - 3.4e-14 52.5 0.0 4.1e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|294495622|ref|YP_003542115.1| - 8.4e-06 25.6 0.0 1.3e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain DUF1967 PF09269.6 gi|294495622|ref|YP_003542115.1| - 0.0095 15.5 0.1 0.16 11.6 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1967) TPP_enzyme_M PF00205.17 gi|294495623|ref|YP_003542116.1| - 5.2e-05 23.0 0.0 0.001 18.8 0.0 2.7 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain FeS PF04060.8 gi|294495624|ref|YP_003542117.1| - 1e-15 56.9 2.7 1e-15 56.9 1.9 2.6 3 0 0 3 3 2 1 Putative Fe-S cluster Fer4_9 PF13187.1 gi|294495624|ref|YP_003542117.1| - 5.9e-09 36.0 26.6 4.4e-07 30.0 5.7 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|294495624|ref|YP_003542117.1| - 5.5e-08 32.0 5.0 5.5e-08 32.0 3.5 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294495624|ref|YP_003542117.1| - 5.5e-07 29.1 20.4 6.8e-06 25.7 2.9 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294495624|ref|YP_003542117.1| - 6.3e-07 29.6 17.1 0.00072 19.8 8.1 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294495624|ref|YP_003542117.1| - 1.6e-06 27.7 3.8 1.6e-06 27.7 2.6 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|294495624|ref|YP_003542117.1| - 1.5e-05 24.7 16.5 0.00063 19.5 7.8 3.3 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294495624|ref|YP_003542117.1| - 2.1e-05 24.2 13.4 4.7e-05 23.1 0.7 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294495624|ref|YP_003542117.1| - 8.1e-05 22.5 13.7 0.00024 21.0 6.2 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294495624|ref|YP_003542117.1| - 9.5e-05 23.0 15.5 0.01 16.5 5.9 2.6 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|294495624|ref|YP_003542117.1| - 0.00028 21.4 1.0 0.00028 21.4 0.7 3.0 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|294495624|ref|YP_003542117.1| - 0.00043 20.3 3.0 0.00043 20.3 2.1 3.5 3 0 0 3 3 3 1 4Fe-4S binding domain YhfH PF14149.1 gi|294495624|ref|YP_003542117.1| - 0.0022 17.7 0.7 0.0022 17.7 0.5 2.5 2 0 0 2 2 2 1 YhfH-like protein Fer4_3 PF12798.2 gi|294495624|ref|YP_003542117.1| - 0.004 17.6 24.2 0.03 14.8 5.7 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|294495624|ref|YP_003542117.1| - 0.0051 16.6 12.2 0.38 10.6 8.5 3.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294495624|ref|YP_003542117.1| - 0.015 15.7 4.7 0.015 15.7 3.3 2.7 2 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|294495624|ref|YP_003542117.1| - 0.016 15.5 9.3 0.016 15.5 6.4 2.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain Flu_C_NS2 PF03555.9 gi|294495624|ref|YP_003542117.1| - 0.072 13.0 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Influenza C non-structural protein (NS2) Fer4_13 PF13370.1 gi|294495624|ref|YP_003542117.1| - 0.38 11.1 15.3 0.067 13.5 5.4 2.9 2 1 0 2 2 2 0 4Fe-4S single cluster domain FeThRed_B PF02943.10 gi|294495625|ref|YP_003542118.1| - 5.9e-28 96.7 2.8 6.7e-28 96.5 1.9 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain Thioredoxin PF00085.15 gi|294495626|ref|YP_003542119.1| - 1.9e-30 104.5 1.5 2.3e-30 104.3 1.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|294495626|ref|YP_003542119.1| - 2.4e-09 37.3 1.0 8.8e-09 35.5 0.7 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|294495626|ref|YP_003542119.1| - 1.9e-08 34.3 0.3 5.8e-06 26.3 0.1 2.3 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|294495626|ref|YP_003542119.1| - 6.9e-07 29.0 0.3 1.2e-06 28.2 0.2 1.5 1 1 0 1 1 1 1 Thioredoxin domain Thioredoxin_6 PF13848.1 gi|294495626|ref|YP_003542119.1| - 1.3e-06 28.3 0.1 1.9e-06 27.8 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain AhpC-TSA PF00578.16 gi|294495626|ref|YP_003542119.1| - 7.7e-06 25.5 0.5 2e-05 24.2 0.4 1.6 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_7 PF13899.1 gi|294495626|ref|YP_003542119.1| - 1.6e-05 24.8 0.1 2.3e-05 24.3 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin-like HyaE PF07449.6 gi|294495626|ref|YP_003542119.1| - 0.00011 22.0 0.0 0.00014 21.6 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_9 PF14595.1 gi|294495626|ref|YP_003542119.1| - 0.0012 18.4 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.1 gi|294495626|ref|YP_003542119.1| - 0.0013 18.7 1.0 0.012 15.5 0.3 2.0 1 1 1 2 2 2 1 Thioredoxin Redoxin PF08534.5 gi|294495626|ref|YP_003542119.1| - 0.0023 17.4 1.3 0.013 15.0 0.4 1.8 1 1 1 2 2 2 1 Redoxin TraF PF13728.1 gi|294495626|ref|YP_003542119.1| - 0.0063 16.0 0.0 0.0068 15.9 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein DUF953 PF06110.6 gi|294495626|ref|YP_003542119.1| - 0.032 13.6 0.3 0.11 11.9 0.2 1.8 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) DIM1 PF02966.11 gi|294495626|ref|YP_003542119.1| - 0.05 13.1 0.1 0.063 12.7 0.1 1.1 1 0 0 1 1 1 0 Mitosis protein DIM1 DUF2847 PF11009.3 gi|294495626|ref|YP_003542119.1| - 0.06 12.9 0.0 0.08 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2847) DSBA PF01323.15 gi|294495626|ref|YP_003542119.1| - 0.063 12.8 0.0 0.54 9.7 0.0 1.9 1 1 1 2 2 2 0 DSBA-like thioredoxin domain DUF836 PF05768.9 gi|294495626|ref|YP_003542119.1| - 0.078 13.2 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) KaiB PF07689.7 gi|294495626|ref|YP_003542119.1| - 0.1 12.0 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 KaiB domain FlpD PF02662.11 gi|294495627|ref|YP_003542120.1| - 5.7e-53 177.8 2.5 1.3e-50 170.2 0.0 4.1 4 0 0 4 4 4 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.22 gi|294495627|ref|YP_003542120.1| - 7.2e-18 63.3 47.6 5.6e-07 28.8 3.5 5.6 5 1 0 5 5 4 3 4Fe-4S binding domain Pyr_redox_2 PF07992.9 gi|294495627|ref|YP_003542120.1| - 5.6e-15 55.7 2.0 1.2e-11 44.9 1.3 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer4_10 PF13237.1 gi|294495627|ref|YP_003542120.1| - 6.8e-15 54.6 24.5 1.3e-08 34.4 5.3 4.2 4 0 0 4 4 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294495627|ref|YP_003542120.1| - 1.1e-13 51.3 56.7 2.8e-08 34.0 8.7 4.9 3 2 3 6 6 6 5 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294495627|ref|YP_003542120.1| - 1.1e-12 47.5 42.9 7.7e-09 35.2 7.3 5.3 6 0 0 6 6 5 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294495627|ref|YP_003542120.1| - 1.5e-12 47.5 35.9 1.2e-07 31.9 8.7 4.5 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294495627|ref|YP_003542120.1| - 3.6e-12 45.4 43.6 0.00017 21.2 2.3 5.5 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294495627|ref|YP_003542120.1| - 1.2e-11 43.9 52.7 0.00015 21.4 2.6 5.8 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_16 PF13484.1 gi|294495627|ref|YP_003542120.1| - 4.7e-09 36.8 31.6 0.00054 20.6 1.5 5.1 5 1 0 5 5 4 3 4Fe-4S double cluster binding domain DAO PF01266.19 gi|294495627|ref|YP_003542120.1| - 6.6e-09 35.1 0.4 4e-05 22.6 0.3 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|294495627|ref|YP_003542120.1| - 5.3e-08 33.1 0.9 0.00038 20.5 0.1 3.3 2 1 2 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Fer4_8 PF13183.1 gi|294495627|ref|YP_003542120.1| - 6e-08 32.5 34.3 4.4e-05 23.4 7.6 4.6 2 2 4 6 6 6 4 4Fe-4S dicluster domain GIDA PF01134.17 gi|294495627|ref|YP_003542120.1| - 7.4e-08 31.6 1.3 3.5e-06 26.1 0.1 2.6 3 0 0 3 3 3 1 Glucose inhibited division protein A Fer4_15 PF13459.1 gi|294495627|ref|YP_003542120.1| - 1.2e-07 32.2 27.7 0.0057 17.1 0.3 4.9 3 1 1 4 4 4 3 4Fe-4S single cluster domain FAD_binding_2 PF00890.19 gi|294495627|ref|YP_003542120.1| - 4.3e-07 29.1 0.5 7e-07 28.4 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|294495627|ref|YP_003542120.1| - 4.7e-07 30.0 26.6 0.032 14.5 1.3 4.8 4 1 1 5 5 5 3 4Fe-4S dicluster domain NAD_binding_8 PF13450.1 gi|294495627|ref|YP_003542120.1| - 5.3e-07 29.5 0.0 1.3e-06 28.2 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|294495627|ref|YP_003542120.1| - 7.6e-07 29.4 2.0 4.7e-06 26.9 0.3 2.7 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|294495627|ref|YP_003542120.1| - 2.4e-06 26.9 0.0 4.8e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|294495627|ref|YP_003542120.1| - 1.3e-05 23.8 0.8 2.4e-05 23.0 0.6 1.4 1 0 0 1 1 1 1 HI0933-like protein K_oxygenase PF13434.1 gi|294495627|ref|YP_003542120.1| - 3.5e-05 22.8 0.6 0.24 10.2 0.1 3.2 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Fer4_18 PF13746.1 gi|294495627|ref|YP_003542120.1| - 0.00012 22.4 39.4 0.018 15.4 1.1 5.6 5 1 1 6 6 5 3 4Fe-4S dicluster domain Thi4 PF01946.12 gi|294495627|ref|YP_003542120.1| - 0.00029 19.9 0.0 0.00063 18.8 0.0 1.5 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|294495627|ref|YP_003542120.1| - 0.00053 19.1 0.4 0.00093 18.3 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.1 gi|294495627|ref|YP_003542120.1| - 0.0011 19.1 0.5 0.029 14.6 0.0 3.1 3 2 0 3 3 3 1 Putative NAD(P)-binding Fer4_4 PF12800.2 gi|294495627|ref|YP_003542120.1| - 0.0082 16.4 3.5 0.0082 16.4 2.4 5.9 6 0 0 6 6 4 3 4Fe-4S binding domain Fer4_13 PF13370.1 gi|294495627|ref|YP_003542120.1| - 0.018 15.4 31.8 0.42 11.0 1.2 4.4 4 0 0 4 4 4 0 4Fe-4S single cluster domain NAD_binding_9 PF13454.1 gi|294495627|ref|YP_003542120.1| - 0.02 14.6 0.2 5.4 6.7 0.1 2.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|294495627|ref|YP_003542120.1| - 0.031 13.1 0.8 0.066 12.1 0.2 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|294495627|ref|YP_003542120.1| - 0.038 13.5 0.0 0.098 12.2 0.0 1.7 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|294495627|ref|YP_003542120.1| - 0.048 13.3 1.0 0.12 12.0 0.3 1.9 2 0 0 2 2 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|294495627|ref|YP_003542120.1| - 0.077 11.6 0.5 0.72 8.4 0.2 2.0 2 0 0 2 2 2 0 Tryptophan halogenase Fer4_11 PF13247.1 gi|294495627|ref|YP_003542120.1| - 0.24 11.3 21.9 0.35 10.7 3.1 3.9 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|294495628|ref|YP_003542121.1| - 2e-40 134.8 73.6 1.2e-08 34.1 1.2 8.4 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294495628|ref|YP_003542121.1| - 4e-33 113.5 55.2 2.3e-11 43.8 3.6 4.7 4 0 0 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294495628|ref|YP_003542121.1| - 6e-28 96.4 62.6 5.6e-10 38.8 5.1 5.8 4 4 1 5 5 5 5 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294495628|ref|YP_003542121.1| - 2.5e-27 93.5 78.9 7.4e-07 28.7 1.0 8.4 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_21 PF14697.1 gi|294495628|ref|YP_003542121.1| - 4.3e-26 90.5 56.4 2.4e-07 30.5 6.0 6.0 4 3 2 6 6 6 6 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294495628|ref|YP_003542121.1| - 1.8e-24 85.7 61.6 1.2e-07 31.8 6.1 6.0 2 1 5 7 7 7 7 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294495628|ref|YP_003542121.1| - 1.2e-20 72.0 72.3 7e-06 25.6 1.4 8.4 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_8 PF13183.1 gi|294495628|ref|YP_003542121.1| - 7.1e-19 67.5 55.5 1.4e-06 28.2 5.4 5.3 2 2 4 6 6 6 6 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294495628|ref|YP_003542121.1| - 7.7e-19 68.2 60.4 0.00017 22.2 6.8 7.1 5 2 3 8 8 7 7 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|294495628|ref|YP_003542121.1| - 1.7e-12 47.6 58.7 0.0023 18.4 0.5 8.5 7 1 1 8 8 8 5 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|294495628|ref|YP_003542121.1| - 1.8e-11 43.4 75.4 0.00017 21.6 1.8 8.5 8 1 0 8 8 8 6 4Fe-4S binding domain Fer4_17 PF13534.1 gi|294495628|ref|YP_003542121.1| - 1.1e-10 41.6 61.0 0.013 15.8 0.8 7.5 2 2 5 7 7 7 6 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294495628|ref|YP_003542121.1| - 5.1e-09 36.4 56.0 0.00037 20.8 1.4 8.3 8 0 0 8 8 8 6 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|294495628|ref|YP_003542121.1| - 4e-05 23.9 71.3 0.079 13.3 1.0 8.6 7 1 1 8 8 8 4 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|294495628|ref|YP_003542121.1| - 5e-05 23.1 35.5 0.0024 17.7 5.5 5.0 3 3 1 4 4 4 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|294495628|ref|YP_003542121.1| - 0.00042 20.6 92.5 0.0032 17.8 3.5 8.3 8 0 0 8 8 8 3 4Fe-4S binding domain TA0956 PF11513.3 gi|294495628|ref|YP_003542121.1| - 0.026 14.5 0.7 0.074 13.1 0.0 1.9 2 0 0 2 2 2 0 Thermoplasma acidophilum protein TA0956 GvpH PF05455.6 gi|294495628|ref|YP_003542121.1| - 0.061 12.9 0.0 0.15 11.6 0.0 1.6 2 0 0 2 2 1 0 GvpH GatB_N PF02934.10 gi|294495629|ref|YP_003542122.1| - 2.6e-74 249.7 0.2 3.7e-74 249.1 0.1 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|294495629|ref|YP_003542122.1| - 5.8e-17 61.7 0.0 1e-16 60.9 0.0 1.4 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|294495629|ref|YP_003542122.1| - 1.9e-16 59.9 0.0 5e-16 58.6 0.0 1.7 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|294495629|ref|YP_003542122.1| - 0.0015 18.4 0.1 0.004 17.0 0.1 1.7 1 0 0 1 1 1 1 Yqey-like protein PD40 PF07676.7 gi|294495630|ref|YP_003542123.1| - 6.7e-34 115.0 12.7 2.3e-07 30.3 0.0 6.3 6 0 0 6 6 6 6 WD40-like Beta Propeller Repeat DPPIV_N PF00930.16 gi|294495630|ref|YP_003542123.1| - 1.1e-19 70.2 0.3 3.2e-07 29.2 0.0 4.2 2 1 2 4 4 4 4 Dipeptidyl peptidase IV (DPP IV) N-terminal region Pectate_lyase22 PF14583.1 gi|294495630|ref|YP_003542123.1| - 9.8e-08 30.8 0.1 0.00023 19.7 0.0 3.5 1 1 3 4 4 4 3 Oligogalacturonate lyase Peptidase_S9_N PF02897.10 gi|294495630|ref|YP_003542123.1| - 0.08 11.5 0.1 0.16 10.5 0.0 1.4 1 0 0 1 1 1 0 Prolyl oligopeptidase, N-terminal beta-propeller domain CPSase_sm_chain PF00988.17 gi|294495631|ref|YP_003542124.1| - 6.7e-47 158.2 0.0 1e-46 157.6 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|294495631|ref|YP_003542124.1| - 6.8e-36 123.5 0.0 1e-35 122.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|294495631|ref|YP_003542124.1| - 5.9e-07 29.1 0.0 6.5e-05 22.4 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 DUF1929 PF09118.6 gi|294495631|ref|YP_003542124.1| - 0.054 13.5 0.2 0.47 10.5 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1929) D-ser_dehydrat PF14031.1 gi|294495631|ref|YP_003542124.1| - 0.073 13.2 0.1 0.78 9.9 0.0 2.2 2 0 0 2 2 2 0 Putative serine dehydratase domain DnaJ PF00226.26 gi|294495631|ref|YP_003542124.1| - 0.12 12.1 0.0 0.29 10.9 0.0 1.6 1 0 0 1 1 1 0 DnaJ domain CPSase_L_D2 PF02786.12 gi|294495632|ref|YP_003542125.1| - 2.7e-106 353.5 1.7 5.8e-71 238.1 0.2 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|294495632|ref|YP_003542125.1| - 1.2e-46 157.3 0.0 5.9e-22 77.8 0.0 3.3 3 0 0 3 3 3 2 Carbamoyl-phosphate synthase L chain, N-terminal domain CPSase_L_D3 PF02787.14 gi|294495632|ref|YP_003542125.1| - 7.2e-43 145.2 0.5 1.9e-42 143.8 0.4 1.8 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp_4 PF13535.1 gi|294495632|ref|YP_003542125.1| - 1.7e-41 141.9 0.1 1.8e-19 70.1 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|294495632|ref|YP_003542125.1| - 2.9e-24 85.4 0.0 2.3e-11 43.0 0.0 4.1 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon MGS PF02142.17 gi|294495632|ref|YP_003542125.1| - 1.7e-22 79.1 0.1 4.2e-21 74.6 0.0 3.3 3 0 0 3 3 3 1 MGS-like domain ATP-grasp PF02222.17 gi|294495632|ref|YP_003542125.1| - 1.3e-18 66.9 0.1 5.2e-08 32.4 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|294495632|ref|YP_003542125.1| - 1.4e-17 63.8 2.7 1.5e-07 30.9 0.0 3.5 4 0 0 4 4 4 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|294495632|ref|YP_003542125.1| - 1.2e-16 60.9 2.0 7.1e-08 32.4 0.0 2.7 3 0 0 3 3 3 2 ATP-grasp domain RimK PF08443.6 gi|294495632|ref|YP_003542125.1| - 1.2e-11 44.4 0.1 1.8e-06 27.5 0.0 3.2 2 1 0 2 2 2 2 RimK-like ATP-grasp domain GARS_A PF01071.14 gi|294495632|ref|YP_003542125.1| - 7.6e-08 32.1 0.2 0.0052 16.3 0.0 2.5 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|294495632|ref|YP_003542125.1| - 0.004 16.3 0.0 0.2 10.8 0.0 2.9 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|294495632|ref|YP_003542125.1| - 0.0051 16.2 0.1 1.1 8.6 0.1 2.9 2 1 0 2 2 2 1 ATP-grasp domain Arginosuc_synth PF00764.14 gi|294495633|ref|YP_003542126.1| - 4.9e-175 582.1 0.0 5.6e-175 582.0 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.8 gi|294495633|ref|YP_003542126.1| - 0.00024 20.4 0.0 0.002 17.4 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|294495633|ref|YP_003542126.1| - 0.003 16.5 0.0 0.0075 15.1 0.0 1.6 2 0 0 2 2 2 1 NAD synthase Asn_synthase PF00733.16 gi|294495633|ref|YP_003542126.1| - 0.0048 16.4 0.0 0.008 15.7 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase Multi_Drug_Res PF00893.14 gi|294495634|ref|YP_003542127.1| - 9e-29 99.7 10.7 1.2e-28 99.3 7.4 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein EmrE PF13536.1 gi|294495634|ref|YP_003542127.1| - 0.0014 18.7 10.8 0.0014 18.7 7.5 1.3 1 1 0 1 1 1 1 Multidrug resistance efflux transporter EamA PF00892.15 gi|294495634|ref|YP_003542127.1| - 0.0015 18.5 14.7 0.0018 18.3 10.2 1.1 1 0 0 1 1 1 1 EamA-like transporter family DUF4040 PF13244.1 gi|294495634|ref|YP_003542127.1| - 0.39 10.7 6.6 0.48 10.4 0.5 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF4040) DUF2721 PF11026.3 gi|294495634|ref|YP_003542127.1| - 0.72 9.4 3.8 1.1 8.8 2.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) TPT PF03151.11 gi|294495634|ref|YP_003542127.1| - 2.8 7.5 10.3 5.7 6.5 7.2 1.6 1 1 0 1 1 1 0 Triose-phosphate Transporter family DUF3980 PF13140.1 gi|294495634|ref|YP_003542127.1| - 7 6.9 8.1 35 4.7 5.6 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3980) VWA_2 PF13519.1 gi|294495635|ref|YP_003542128.1| - 1.1e-17 64.6 3.2 4.3e-13 49.7 0.0 3.1 2 1 1 3 3 3 2 von Willebrand factor type A domain DUF1355 PF07090.6 gi|294495635|ref|YP_003542128.1| - 2.4e-09 36.8 0.0 6.1e-09 35.4 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1355) VWA PF00092.23 gi|294495635|ref|YP_003542128.1| - 1.7e-07 31.1 1.1 0.0026 17.4 0.0 2.6 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA_3 PF13768.1 gi|294495635|ref|YP_003542128.1| - 0.00026 20.7 0.0 0.0066 16.1 0.0 2.3 2 0 0 2 2 2 1 von Willebrand factor type A domain ThuA PF06283.6 gi|294495635|ref|YP_003542128.1| - 0.0027 17.4 0.0 0.016 14.9 0.0 2.0 2 0 0 2 2 2 1 Trehalose utilisation YibE_F PF07907.6 gi|294495635|ref|YP_003542128.1| - 0.055 12.6 0.5 0.94 8.6 0.0 2.2 2 0 0 2 2 2 0 YibE/F-like protein DUF4350 PF14258.1 gi|294495635|ref|YP_003542128.1| - 0.12 12.6 1.1 5.4 7.2 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4350) BatA PF07584.6 gi|294495636|ref|YP_003542129.1| - 2.5e-14 53.2 8.4 2.5e-14 53.2 5.9 2.2 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_2 PF13519.1 gi|294495636|ref|YP_003542129.1| - 1.6e-06 28.3 4.8 3.7e-06 27.1 3.0 2.0 1 1 0 1 1 1 1 von Willebrand factor type A domain ABC_transp_aux PF09822.4 gi|294495636|ref|YP_003542129.1| - 0.00013 21.5 0.0 0.00045 19.7 0.0 1.8 1 1 0 1 1 1 1 ABC-type uncharacterized transport system DUF2194 PF09960.4 gi|294495636|ref|YP_003542129.1| - 0.00028 19.0 0.0 0.00051 18.2 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2194) DUF4350 PF14258.1 gi|294495636|ref|YP_003542129.1| - 0.001 19.1 0.2 0.034 14.3 0.0 3.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4350) Glyco_hydro_42M PF08532.5 gi|294495636|ref|YP_003542129.1| - 0.0019 17.3 0.0 0.0041 16.2 0.0 1.5 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain DUF4159 PF13709.1 gi|294495636|ref|YP_003542129.1| - 0.043 12.9 0.0 0.11 11.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4159) Closter_coat PF01785.12 gi|294495636|ref|YP_003542129.1| - 0.091 11.7 0.1 0.22 10.5 0.1 1.5 1 0 0 1 1 1 0 Closterovirus coat protein Viral_Beta_CD PF04530.7 gi|294495636|ref|YP_003542129.1| - 0.096 12.8 0.0 2.4 8.3 0.0 2.4 2 0 0 2 2 2 0 Viral Beta C/D like family SPATIAL PF15256.1 gi|294495636|ref|YP_003542129.1| - 0.13 12.3 0.1 0.49 10.4 0.0 1.9 2 0 0 2 2 2 0 SPATIAL DUF58 PF01882.13 gi|294495637|ref|YP_003542130.1| - 4.1e-21 74.8 0.0 2.6e-20 72.3 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function DUF58 VWA_CoxE PF05762.9 gi|294495637|ref|YP_003542130.1| - 3.5e-07 29.5 0.0 5.9e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|294495637|ref|YP_003542130.1| - 5.5e-05 23.3 0.0 7.9e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_3 PF07726.6 gi|294495638|ref|YP_003542131.1| - 2.3e-62 208.4 0.1 4.8e-62 207.3 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|294495638|ref|YP_003542131.1| - 2.6e-11 43.4 0.0 5.2e-11 42.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|294495638|ref|YP_003542131.1| - 2.7e-06 26.4 0.1 1.1e-05 24.4 0.1 2.0 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|294495638|ref|YP_003542131.1| - 1.6e-05 25.1 0.0 3.3e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|294495638|ref|YP_003542131.1| - 0.00097 18.2 0.5 0.019 14.0 0.3 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|294495638|ref|YP_003542131.1| - 0.0019 17.7 0.1 0.011 15.1 0.1 2.2 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_2 PF07724.9 gi|294495638|ref|YP_003542131.1| - 0.035 14.0 0.0 0.11 12.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_11 PF13086.1 gi|294495638|ref|YP_003542131.1| - 0.084 12.4 0.0 0.13 11.7 0.0 1.3 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|294495638|ref|YP_003542131.1| - 0.1 11.7 0.0 1.1 8.4 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Fig1 PF12351.3 gi|294495639|ref|YP_003542132.1| - 0.3 10.9 2.8 0.57 10.0 1.9 1.3 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 PDT PF00800.13 gi|294495640|ref|YP_003542133.1| - 2.1e-58 196.8 0.0 2.8e-58 196.4 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|294495640|ref|YP_003542133.1| - 1.3e-08 34.1 0.0 9.1e-08 31.4 0.0 2.3 2 0 0 2 2 2 1 ACT domain DUF77 PF01910.12 gi|294495640|ref|YP_003542133.1| - 0.12 12.1 0.1 0.41 10.3 0.0 2.0 1 1 0 1 1 1 0 Domain of unknown function DUF77 Metalloenzyme PF01676.13 gi|294495641|ref|YP_003542134.1| - 1.4e-12 47.6 0.2 4.2e-12 45.9 0.1 1.8 1 1 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.18 gi|294495641|ref|YP_003542134.1| - 8.8e-10 38.2 0.0 5.4e-09 35.6 0.0 2.0 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|294495641|ref|YP_003542134.1| - 4.5e-05 22.9 0.0 0.00032 20.1 0.0 2.0 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase URO-D PF01208.12 gi|294495642|ref|YP_003542135.1| - 8.8e-88 294.5 0.2 9.8e-88 294.3 0.1 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DUF4445 PF14574.1 gi|294495643|ref|YP_003542136.1| - 1.1e-95 320.3 9.0 2.4e-95 319.2 6.3 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4_10 PF13237.1 gi|294495643|ref|YP_003542136.1| - 2.3e-06 27.3 9.2 5.1e-06 26.1 6.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294495643|ref|YP_003542136.1| - 3e-06 27.3 6.5 7.2e-06 26.1 4.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294495643|ref|YP_003542136.1| - 4e-06 27.1 11.0 8.3e-06 26.0 7.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294495643|ref|YP_003542136.1| - 1.9e-05 25.3 10.3 0.00066 20.3 1.8 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|294495643|ref|YP_003542136.1| - 3.6e-05 23.1 11.2 0.00078 18.9 2.5 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|294495643|ref|YP_003542136.1| - 0.00021 21.1 5.3 0.00045 20.0 3.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294495643|ref|YP_003542136.1| - 0.00032 20.4 12.7 0.011 15.6 0.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|294495643|ref|YP_003542136.1| - 0.00057 19.8 1.9 0.073 13.1 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294495643|ref|YP_003542136.1| - 0.0032 17.6 9.8 0.3 11.5 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|294495643|ref|YP_003542136.1| - 0.0035 17.1 12.6 0.0094 15.7 2.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294495643|ref|YP_003542136.1| - 0.0049 16.7 11.3 0.072 13.0 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|294495643|ref|YP_003542136.1| - 0.011 16.1 5.6 0.14 12.6 0.1 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|294495643|ref|YP_003542136.1| - 0.022 15.2 19.5 0.36 11.5 4.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|294495643|ref|YP_003542136.1| - 1.2 9.5 12.5 0.84 10.0 1.5 2.6 1 1 0 2 2 2 0 4Fe-4S dicluster domain cobW PF02492.14 gi|294495644|ref|YP_003542137.1| - 1.5e-37 128.7 0.2 2.3e-37 128.1 0.2 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.17 gi|294495644|ref|YP_003542137.1| - 0.0012 18.3 2.4 0.012 15.0 0.6 2.5 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|294495644|ref|YP_003542137.1| - 0.0018 18.0 3.4 0.016 14.8 0.8 3.0 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|294495644|ref|YP_003542137.1| - 0.021 14.5 0.1 0.13 12.0 0.1 2.1 2 0 0 2 2 2 0 Part of AAA domain Herpes_ori_bp PF02399.10 gi|294495644|ref|YP_003542137.1| - 0.044 11.7 1.6 0.46 8.3 0.1 2.1 2 0 0 2 2 2 0 Origin of replication binding protein ArgK PF03308.11 gi|294495644|ref|YP_003542137.1| - 2.3 6.9 5.4 0.3 9.8 0.5 2.0 3 0 0 3 3 3 0 ArgK protein PAS_9 PF13426.1 gi|294495646|ref|YP_003542139.1| - 6.9e-39 132.4 5.6 1.5e-07 31.7 0.0 6.4 6 0 0 6 6 6 6 PAS domain PAS PF00989.19 gi|294495646|ref|YP_003542139.1| - 1.4e-36 124.6 0.5 1.4e-05 24.8 0.0 6.5 6 0 0 6 6 6 6 PAS fold PAS_3 PF08447.6 gi|294495646|ref|YP_003542139.1| - 2.7e-27 94.6 2.2 9.7e-20 70.4 0.2 4.6 4 0 0 4 4 4 2 PAS fold PAS_4 PF08448.5 gi|294495646|ref|YP_003542139.1| - 4.3e-22 78.2 0.0 0.013 15.4 0.0 6.3 6 0 0 6 6 6 6 PAS fold PAS_8 PF13188.1 gi|294495646|ref|YP_003542139.1| - 2.1e-19 68.6 0.0 0.00017 21.3 0.0 5.6 5 0 0 5 5 5 5 PAS domain GAF_2 PF13185.1 gi|294495646|ref|YP_003542139.1| - 2.9e-11 44.0 0.0 3.4e-08 34.1 0.0 2.8 2 1 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|294495646|ref|YP_003542139.1| - 3e-09 37.0 0.0 8.2e-08 32.4 0.0 2.8 2 0 0 2 2 2 1 GAF domain PAS_10 PF13596.1 gi|294495646|ref|YP_003542139.1| - 2.1e-08 34.3 0.1 0.082 13.1 0.0 4.2 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.2 gi|294495646|ref|YP_003542139.1| - 3.8e-07 30.1 0.4 2.2 8.2 0.0 6.2 5 2 0 5 5 5 1 PAS fold GAF PF01590.21 gi|294495646|ref|YP_003542139.1| - 0.02 14.9 0.0 0.31 11.1 0.0 3.0 4 1 0 4 4 4 0 GAF domain B12-binding PF02310.14 gi|294495647|ref|YP_003542140.1| - 5.9e-18 64.8 0.2 1.2e-17 63.9 0.1 1.5 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|294495647|ref|YP_003542140.1| - 1.1e-11 44.5 0.0 3.1e-11 43.1 0.0 1.8 2 0 0 2 2 2 1 B12 binding domain DNA_pol3_gamma3 PF12169.3 gi|294495647|ref|YP_003542140.1| - 0.024 14.3 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III subunits gamma and tau domain III DUF1296 PF06972.6 gi|294495647|ref|YP_003542140.1| - 0.095 12.6 0.0 0.34 10.9 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1296) MtaB PF12176.3 gi|294495648|ref|YP_003542141.1| - 5.6e-224 743.7 1.6 6.3e-224 743.5 1.1 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit B12-binding PF02310.14 gi|294495649|ref|YP_003542142.1| - 2.8e-19 69.1 0.2 4.7e-19 68.4 0.2 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|294495649|ref|YP_003542142.1| - 1.4e-13 50.6 0.0 3.3e-13 49.4 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain MtaB PF12176.3 gi|294495650|ref|YP_003542143.1| - 4.5e-248 823.2 2.9 5.1e-248 823.0 2.0 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit Grp1_Fun34_YaaH PF01184.14 gi|294495651|ref|YP_003542144.1| - 1.3e-40 138.9 21.8 1.7e-40 138.5 15.1 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family Cation_efflux PF01545.16 gi|294495652|ref|YP_003542145.1| - 2.6e-28 98.8 6.7 3.5e-28 98.4 4.7 1.2 1 0 0 1 1 1 1 Cation efflux family FYRC PF05965.9 gi|294495652|ref|YP_003542145.1| - 0.029 14.1 0.0 0.072 12.9 0.0 1.7 1 0 0 1 1 1 0 F/Y rich C-terminus MscS_TM PF12794.2 gi|294495652|ref|YP_003542145.1| - 6.6 5.2 14.3 0.13 10.8 1.1 2.3 1 1 0 2 2 2 0 Mechanosensitive ion channel inner membrane domain 1 Hydantoinase_A PF01968.13 gi|294495653|ref|YP_003542146.1| - 1.8e-76 257.0 0.4 4e-74 249.3 0.0 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|294495653|ref|YP_003542146.1| - 2e-41 141.4 4.2 6.6e-39 133.2 0.3 2.8 3 1 0 3 3 3 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|294495653|ref|YP_003542146.1| - 2.7e-07 29.3 2.3 0.0029 16.0 0.1 2.1 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|294495653|ref|YP_003542146.1| - 0.068 12.4 0.0 0.19 10.9 0.0 1.7 1 1 1 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Ppx-GppA PF02541.11 gi|294495653|ref|YP_003542146.1| - 1.2 8.2 3.9 1.2 8.3 0.5 2.1 2 0 0 2 2 2 0 Ppx/GppA phosphatase family MFS_1 PF07690.11 gi|294495654|ref|YP_003542147.1| - 4.1e-06 25.7 3.9 4.1e-06 25.7 2.7 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|294495654|ref|YP_003542147.1| - 0.026 12.6 0.5 0.029 12.4 0.4 1.0 1 0 0 1 1 1 0 Transmembrane secretion effector Rab5ip PF07019.7 gi|294495654|ref|YP_003542147.1| - 1.3 9.1 5.8 1.7 8.8 4.0 1.4 1 1 0 1 1 1 0 Rab5-interacting protein (Rab5ip) MFS_1 PF07690.11 gi|294495655|ref|YP_003542148.1| - 5.7e-23 81.1 32.5 6.5e-23 81.0 22.5 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily FixQ PF05545.6 gi|294495655|ref|YP_003542148.1| - 0.19 11.4 0.0 0.19 11.4 0.0 3.1 4 0 0 4 4 4 0 Cbb3-type cytochrome oxidase component FixQ PepSY_TM_3 PF13706.1 gi|294495655|ref|YP_003542148.1| - 0.5 9.8 6.5 0.14 11.6 0.8 3.0 2 0 0 2 2 2 0 PepSY-associated TM helix DUF3487 PF11990.3 gi|294495655|ref|YP_003542148.1| - 7.3 6.0 14.6 5.8 6.3 1.2 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3487) PGDYG PF14083.1 gi|294495656|ref|YP_003542149.1| - 0.095 13.0 0.0 0.11 12.9 0.0 1.1 1 0 0 1 1 1 0 PGDYG protein SKI PF01202.17 gi|294495657|ref|YP_003542150.1| - 7.8e-36 123.3 0.1 8.9e-36 123.1 0.0 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_17 PF13207.1 gi|294495657|ref|YP_003542150.1| - 8.1e-12 46.0 0.7 1.7e-11 44.9 0.5 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|294495657|ref|YP_003542150.1| - 2e-07 31.3 1.2 3.7e-07 30.4 0.8 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|294495657|ref|YP_003542150.1| - 2.5e-05 24.1 0.0 3.7e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|294495657|ref|YP_003542150.1| - 8.7e-05 22.5 0.5 0.00056 19.8 0.0 2.2 1 1 1 2 2 2 1 Cytidylate kinase-like family AAA PF00004.24 gi|294495657|ref|YP_003542150.1| - 0.0045 17.1 0.2 0.0072 16.5 0.2 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CoaE PF01121.15 gi|294495657|ref|YP_003542150.1| - 0.0083 15.5 0.8 0.015 14.6 0.1 1.7 2 1 0 2 2 2 1 Dephospho-CoA kinase AAA_14 PF13173.1 gi|294495657|ref|YP_003542150.1| - 0.015 15.1 1.2 0.083 12.7 0.9 2.3 1 1 0 1 1 1 0 AAA domain MazG-like PF12643.2 gi|294495657|ref|YP_003542150.1| - 0.019 14.8 0.4 0.033 14.1 0.0 1.6 2 0 0 2 2 2 0 MazG-like family DUF258 PF03193.11 gi|294495657|ref|YP_003542150.1| - 0.055 12.6 0.2 0.13 11.4 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|294495657|ref|YP_003542150.1| - 0.096 12.4 0.1 0.37 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|294495657|ref|YP_003542150.1| - 0.11 12.6 0.4 0.17 12.0 0.3 1.7 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|294495657|ref|YP_003542150.1| - 0.33 11.2 1.8 0.59 10.4 1.2 1.7 1 1 0 1 1 1 0 ABC transporter NB-ARC PF00931.17 gi|294495657|ref|YP_003542150.1| - 0.64 8.8 8.4 0.25 10.1 3.0 2.2 2 1 0 2 2 2 0 NB-ARC domain DUF711 PF05167.7 gi|294495658|ref|YP_003542151.1| - 1.9e-178 593.2 8.5 2.4e-178 592.9 5.9 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) ACT_6 PF13740.1 gi|294495659|ref|YP_003542152.1| - 8.8e-16 57.4 0.8 1e-15 57.2 0.5 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|294495659|ref|YP_003542152.1| - 1.4e-09 37.2 0.6 1.7e-09 36.9 0.4 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|294495659|ref|YP_003542152.1| - 8.9e-05 22.7 0.8 0.00015 21.9 0.6 1.4 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|294495659|ref|YP_003542152.1| - 0.0076 15.7 0.4 0.011 15.1 0.2 1.3 1 0 0 1 1 1 1 ACT domain DUF3921 PF13060.1 gi|294495659|ref|YP_003542152.1| - 0.044 13.6 0.0 0.085 12.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3921) Flagellin_IN PF07196.8 gi|294495659|ref|YP_003542152.1| - 0.1 12.5 0.1 0.27 11.2 0.0 1.7 2 1 0 2 2 2 0 Flagellin hook IN motif DUF4177 PF13783.1 gi|294495660|ref|YP_003542153.1| - 2.9e-11 42.8 0.0 3.4e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) DUF2115 PF09888.4 gi|294495661|ref|YP_003542154.1| - 7.5e-47 159.4 2.3 8.5e-47 159.2 1.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) AvrPtoB-E3_ubiq PF09046.5 gi|294495661|ref|YP_003542154.1| - 0.02 14.8 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 AvrPtoB E3 ubiquitin ligase PMSR PF01625.16 gi|294495662|ref|YP_003542155.1| - 1.2e-66 223.3 0.4 1.4e-66 223.1 0.3 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase CS PF04969.11 gi|294495663|ref|YP_003542156.1| - 0.0001 22.7 0.2 0.00016 22.1 0.1 1.4 1 0 0 1 1 1 1 CS domain HSP20 PF00011.16 gi|294495663|ref|YP_003542156.1| - 0.0011 18.8 0.1 0.0016 18.2 0.1 1.3 1 0 0 1 1 1 1 Hsp20/alpha crystallin family HlyD_2 PF12700.2 gi|294495663|ref|YP_003542156.1| - 0.0063 15.7 0.4 0.0069 15.5 0.3 1.1 1 0 0 1 1 1 1 HlyD family secretion protein zf-CSL PF05207.8 gi|294495664|ref|YP_003542157.1| - 0.0054 16.2 1.6 0.01 15.3 1.1 1.5 1 0 0 1 1 1 1 CSL zinc finger DUF2362 PF10154.4 gi|294495664|ref|YP_003542157.1| - 0.01 14.5 0.1 0.014 14.1 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2362) DUF2551 PF10826.3 gi|294495665|ref|YP_003542158.1| - 4.8e-32 109.7 0.8 5.7e-32 109.4 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.11 gi|294495665|ref|YP_003542158.1| - 0.00089 19.3 0.1 0.0013 18.8 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.14 gi|294495666|ref|YP_003542159.1| - 0.05 13.3 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HisKA_2 PF07568.7 gi|294495667|ref|YP_003542160.1| - 9.5e-28 95.8 0.8 9.5e-28 95.8 0.6 2.4 3 0 0 3 3 3 1 Histidine kinase HATPase_c PF02518.21 gi|294495667|ref|YP_003542160.1| - 9.2e-09 35.0 0.1 2.2e-08 33.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|294495667|ref|YP_003542160.1| - 5.4e-05 22.9 0.0 0.00013 21.7 0.0 1.7 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|294495667|ref|YP_003542160.1| - 0.00032 21.0 0.0 0.0012 19.1 0.0 2.1 2 0 0 2 2 2 1 HWE histidine kinase DUF964 PF06133.6 gi|294495667|ref|YP_003542160.1| - 0.42 10.6 10.4 15 5.6 0.0 3.7 2 1 2 4 4 4 0 Protein of unknown function (DUF964) PPDK_N PF01326.14 gi|294495668|ref|YP_003542161.1| - 2.8e-93 312.5 0.0 6.4e-93 311.3 0.0 1.5 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|294495668|ref|YP_003542161.1| - 5e-62 209.4 0.0 8e-62 208.7 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|294495668|ref|YP_003542161.1| - 3.1e-23 81.1 0.6 8.9e-23 79.6 0.3 1.9 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain Jacalin PF01419.12 gi|294495668|ref|YP_003542161.1| - 0.054 13.3 0.3 0.22 11.4 0.0 2.1 3 0 0 3 3 3 0 Jacalin-like lectin domain Peptidase_S15 PF02129.13 gi|294495669|ref|YP_003542162.1| - 8e-62 209.1 0.5 1.1e-61 208.6 0.4 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) PepX_C PF08530.5 gi|294495669|ref|YP_003542162.1| - 7.6e-44 150.1 0.0 1.2e-43 149.5 0.0 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Abhydrolase_6 PF12697.2 gi|294495669|ref|YP_003542162.1| - 3.2e-14 53.3 0.0 6e-14 52.4 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|294495669|ref|YP_003542162.1| - 4.9e-10 39.3 0.0 1.1e-09 38.1 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|294495669|ref|YP_003542162.1| - 3.6e-06 26.3 0.1 0.00014 21.1 0.0 2.2 2 0 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.15 gi|294495669|ref|YP_003542162.1| - 0.00043 19.9 0.0 0.00093 18.8 0.0 1.6 1 0 0 1 1 1 1 alpha/beta hydrolase fold AXE1 PF05448.7 gi|294495669|ref|YP_003542162.1| - 0.00048 18.7 0.0 0.0018 16.8 0.0 1.8 1 1 1 2 2 2 1 Acetyl xylan esterase (AXE1) DLH PF01738.13 gi|294495669|ref|YP_003542162.1| - 0.0013 18.0 0.0 0.0032 16.7 0.0 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family BAAT_C PF08840.6 gi|294495669|ref|YP_003542162.1| - 0.0089 15.7 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Hydrolase_4 PF12146.3 gi|294495669|ref|YP_003542162.1| - 0.031 14.1 0.1 0.089 12.6 0.1 1.8 1 1 0 1 1 1 0 Putative lysophospholipase NAM PF02365.10 gi|294495669|ref|YP_003542162.1| - 0.06 13.5 0.2 0.12 12.5 0.1 1.4 1 0 0 1 1 1 0 No apical meristem (NAM) protein ATP-grasp_4 PF13535.1 gi|294495670|ref|YP_003542163.1| - 8.8e-20 71.2 0.0 1.4e-19 70.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|294495670|ref|YP_003542163.1| - 2e-09 37.0 0.0 3.6e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_Ter PF15632.1 gi|294495670|ref|YP_003542163.1| - 5.1e-05 22.1 0.0 8e-05 21.5 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Biotin_lipoyl_2 PF13533.1 gi|294495670|ref|YP_003542163.1| - 0.12 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Biotin-lipoyl like ABC_tran PF00005.22 gi|294495671|ref|YP_003542164.1| - 1.1e-20 74.2 0.0 3.6e-20 72.6 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|294495671|ref|YP_003542164.1| - 8.4e-09 35.7 0.4 0.00032 20.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|294495671|ref|YP_003542164.1| - 6.9e-05 22.1 0.2 0.02 14.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|294495671|ref|YP_003542164.1| - 0.0013 17.8 0.3 0.0026 16.9 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|294495671|ref|YP_003542164.1| - 0.002 18.4 1.3 0.0023 18.2 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|294495671|ref|YP_003542164.1| - 0.003 17.0 0.2 0.016 14.7 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|294495671|ref|YP_003542164.1| - 0.029 13.4 0.3 0.3 10.0 0.1 2.0 2 0 0 2 2 2 0 AAA ATPase domain AgrD PF05931.6 gi|294495671|ref|YP_003542164.1| - 0.06 12.9 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 Staphylococcal AgrD protein AAA_13 PF13166.1 gi|294495671|ref|YP_003542164.1| - 0.097 11.1 0.1 0.67 8.3 0.1 1.9 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|294495671|ref|YP_003542164.1| - 0.13 11.6 0.0 0.36 10.2 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family UPF0051 PF01458.12 gi|294495672|ref|YP_003542165.1| - 6.8e-55 186.0 0.3 8.6e-55 185.6 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) FMN_red PF03358.10 gi|294495673|ref|YP_003542166.1| - 1e-17 64.0 0.0 1.3e-17 63.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|294495673|ref|YP_003542166.1| - 1.4e-05 24.6 0.0 2.4e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold NadA PF02445.11 gi|294495674|ref|YP_003542167.1| - 8.9e-121 402.2 8.5 1e-120 402.0 5.9 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein DUF1246 PF06849.7 gi|294495674|ref|YP_003542167.1| - 0.1 12.4 0.2 0.35 10.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1246) Phytochelatin PF05023.9 gi|294495674|ref|YP_003542167.1| - 0.11 11.4 0.4 0.21 10.5 0.0 1.6 2 0 0 2 2 2 0 Phytochelatin synthase HMA PF00403.21 gi|294495675|ref|YP_003542168.1| - 1.1e-16 60.6 4.4 1.2e-16 60.5 3.1 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Thioredoxin_3 PF13192.1 gi|294495675|ref|YP_003542168.1| - 0.037 13.8 2.5 0.05 13.4 1.7 1.3 1 1 0 1 1 1 0 Thioredoxin domain Thioredoxin PF00085.15 gi|294495675|ref|YP_003542168.1| - 0.046 13.3 0.5 0.05 13.2 0.3 1.2 1 0 0 1 1 1 0 Thioredoxin E1-E2_ATPase PF00122.15 gi|294495676|ref|YP_003542169.1| - 3.7e-64 215.9 2.8 7.3e-64 214.9 1.3 1.9 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|294495676|ref|YP_003542169.1| - 4.2e-50 171.1 5.0 4.7e-50 170.9 2.7 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|294495676|ref|YP_003542169.1| - 2e-46 155.9 1.2 1.5e-15 57.0 0.0 3.8 3 0 0 3 3 3 3 Heavy-metal-associated domain HAD PF12710.2 gi|294495676|ref|YP_003542169.1| - 1e-16 61.6 0.0 3.3e-16 60.0 0.0 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|294495676|ref|YP_003542169.1| - 7.8e-07 28.9 4.9 1.1e-05 25.1 1.0 2.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DEK_C PF08766.6 gi|294495676|ref|YP_003542169.1| - 0.0011 18.6 0.0 0.0029 17.3 0.0 1.6 1 0 0 1 1 1 1 DEK C terminal domain TusA PF01206.12 gi|294495676|ref|YP_003542169.1| - 0.013 15.0 0.1 3.2 7.4 0.0 3.3 2 1 0 2 2 2 0 Sulfurtransferase TusA Hydrolase_6 PF13344.1 gi|294495676|ref|YP_003542169.1| - 0.024 14.5 0.0 0.22 11.4 0.0 2.6 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase MafB19-deam PF14437.1 gi|294495676|ref|YP_003542169.1| - 0.13 11.8 1.4 1.6 8.3 0.0 3.0 3 0 0 3 3 3 0 MafB19-like deaminase DUF3149 PF11346.3 gi|294495676|ref|YP_003542169.1| - 2.4 7.8 10.5 5.9 6.5 7.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) Cytochrom_B_N PF00033.14 gi|294495677|ref|YP_003542170.1| - 0.11 11.8 1.3 0.13 11.5 0.9 1.1 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB Cupin_2 PF07883.6 gi|294495678|ref|YP_003542171.1| - 9.2e-17 60.3 0.0 1.4e-16 59.7 0.0 1.3 1 0 0 1 1 1 1 Cupin domain HTH_19 PF12844.2 gi|294495678|ref|YP_003542171.1| - 5.5e-10 39.1 0.0 9.1e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|294495678|ref|YP_003542171.1| - 2.1e-07 30.6 0.1 3.1e-07 30.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|294495678|ref|YP_003542171.1| - 6e-06 26.3 0.0 8.4e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.14 gi|294495678|ref|YP_003542171.1| - 0.00027 20.6 0.0 0.00038 20.1 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|294495678|ref|YP_003542171.1| - 0.00099 18.7 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase EutQ PF06249.7 gi|294495678|ref|YP_003542171.1| - 0.0034 16.9 0.0 0.006 16.1 0.0 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Cupin_3 PF05899.7 gi|294495678|ref|YP_003542171.1| - 0.0088 15.4 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.3 gi|294495678|ref|YP_003542171.1| - 0.034 14.1 0.1 0.066 13.2 0.0 1.5 1 0 0 1 1 1 0 Mif2/CENP-C like AMP-binding PF00501.23 gi|294495679|ref|YP_003542172.1| - 2.4e-76 256.7 0.0 2.8e-76 256.5 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|294495679|ref|YP_003542172.1| - 0.00015 22.6 0.1 0.00035 21.4 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Fer4_7 PF12838.2 gi|294495680|ref|YP_003542173.1| - 3.2e-11 43.4 11.3 4.3e-11 43.0 7.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294495680|ref|YP_003542173.1| - 2.2e-08 33.8 20.0 4.5e-07 29.6 6.2 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294495680|ref|YP_003542173.1| - 5.6e-07 29.2 24.2 3.1e-06 26.8 8.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294495680|ref|YP_003542173.1| - 6.2e-07 29.0 11.4 0.001 18.8 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|294495680|ref|YP_003542173.1| - 2.3e-06 27.5 9.3 3.6e-06 26.8 6.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294495680|ref|YP_003542173.1| - 4.7e-06 26.7 13.7 6.5e-06 26.3 8.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|294495680|ref|YP_003542173.1| - 1.5e-05 25.4 5.0 0.02 15.4 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|294495680|ref|YP_003542173.1| - 2.7e-05 23.7 13.2 0.011 15.6 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|294495680|ref|YP_003542173.1| - 7.7e-05 22.9 12.2 0.027 14.8 9.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|294495680|ref|YP_003542173.1| - 0.0001 21.7 17.4 0.00081 18.8 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|294495680|ref|YP_003542173.1| - 0.00016 22.3 13.7 0.004 17.8 9.6 2.1 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|294495680|ref|YP_003542173.1| - 0.00022 21.5 13.8 0.03 14.7 1.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294495680|ref|YP_003542173.1| - 0.0005 20.1 14.5 0.065 13.6 2.2 2.4 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|294495680|ref|YP_003542173.1| - 0.00086 19.6 17.8 0.014 15.9 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|294495680|ref|YP_003542173.1| - 0.0013 19.0 8.1 0.26 11.7 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain P12 PF12669.2 gi|294495680|ref|YP_003542173.1| - 0.05 13.8 5.9 0.22 11.7 0.8 2.1 2 0 0 2 2 2 0 Virus attachment protein p12 family POR_N PF01855.14 gi|294495681|ref|YP_003542174.1| - 1.4e-61 207.9 0.0 1.7e-61 207.6 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|294495681|ref|YP_003542174.1| - 8.1e-05 22.5 0.0 0.00017 21.5 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|294495681|ref|YP_003542174.1| - 0.00017 21.1 0.1 0.00027 20.4 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IMPDH PF00478.20 gi|294495681|ref|YP_003542174.1| - 0.01 14.7 0.0 0.021 13.7 0.0 1.5 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain POR PF01558.13 gi|294495682|ref|YP_003542175.1| - 2.5e-37 128.4 0.1 4e-37 127.7 0.1 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|294495682|ref|YP_003542175.1| - 2.4e-22 79.1 0.1 4.2e-22 78.3 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FAD_binding_1 PF00667.15 gi|294495682|ref|YP_003542175.1| - 0.17 11.3 0.0 0.27 10.6 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain DUF4401 PF14351.1 gi|294495683|ref|YP_003542176.1| - 0.006 15.6 18.4 0.18 10.7 4.7 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF4401) YtpI PF14007.1 gi|294495683|ref|YP_003542176.1| - 0.017 15.0 1.8 0.017 15.0 1.2 2.7 3 0 0 3 3 3 0 YtpI-like protein Spo7_2_N PF15407.1 gi|294495684|ref|YP_003542177.1| - 0.017 14.5 0.0 0.024 14.0 0.0 1.1 1 0 0 1 1 1 0 Sporulation protein family 7 Acetyltransf_5 PF13444.1 gi|294495684|ref|YP_003542177.1| - 0.055 14.0 0.0 0.078 13.5 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Peptidase_S8 PF00082.17 gi|294495685|ref|YP_003542178.1| - 2e-48 164.9 6.6 2e-48 164.9 4.6 2.6 2 1 0 2 2 2 1 Subtilase family fn3 PF00041.16 gi|294495685|ref|YP_003542178.1| - 0.00042 20.3 0.8 0.0016 18.5 0.5 2.0 1 0 0 1 1 1 1 Fibronectin type III domain Big_3_4 PF13754.1 gi|294495685|ref|YP_003542178.1| - 0.0019 18.4 17.3 0.0043 17.3 3.4 7.1 6 1 1 7 7 7 2 Bacterial Ig-like domain (group 3) Response_reg PF00072.19 gi|294495686|ref|YP_003542179.1| - 2.1e-16 59.9 0.2 3.4e-16 59.2 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.19 gi|294495686|ref|YP_003542179.1| - 2.2e-14 53.2 0.0 3.3e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|294495686|ref|YP_003542179.1| - 3.2e-14 53.1 0.0 5e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|294495686|ref|YP_003542179.1| - 4.6e-12 45.9 0.0 6.2e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|294495686|ref|YP_003542179.1| - 2.7e-05 23.8 0.0 6.4e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_10 PF13596.1 gi|294495686|ref|YP_003542179.1| - 0.069 13.4 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 PAS domain PmbA_TldD PF01523.11 gi|294495687|ref|YP_003542180.1| - 3.5e-63 213.6 0.7 4.6e-63 213.2 0.5 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|294495688|ref|YP_003542181.1| - 1.1e-76 257.9 0.1 1.5e-76 257.5 0.0 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Lon_C PF05362.8 gi|294495689|ref|YP_003542182.1| - 1.4e-32 112.6 4.4 2.3e-32 111.9 3.1 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|294495689|ref|YP_003542182.1| - 1.3e-25 90.0 0.1 2e-16 59.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|294495689|ref|YP_003542182.1| - 4.7e-17 61.8 0.2 3.6e-11 42.6 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|294495689|ref|YP_003542182.1| - 2.3e-14 53.2 0.0 1.8e-07 30.8 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.9 gi|294495689|ref|YP_003542182.1| - 6.8e-11 42.0 0.0 0.00037 20.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|294495689|ref|YP_003542182.1| - 1.1e-09 37.8 0.2 2.6e-09 36.6 0.1 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.18 gi|294495689|ref|YP_003542182.1| - 1e-07 31.1 2.2 0.027 13.3 0.0 3.5 4 0 0 4 4 3 3 MCM2/3/5 family AAA PF00004.24 gi|294495689|ref|YP_003542182.1| - 3.2e-07 30.6 0.0 0.0061 16.7 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|294495689|ref|YP_003542182.1| - 9.2e-06 25.8 0.0 0.0018 18.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|294495689|ref|YP_003542182.1| - 3.5e-05 22.9 0.0 0.0066 15.5 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activ_2 PF14532.1 gi|294495689|ref|YP_003542182.1| - 4e-05 23.6 0.0 0.069 13.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.6 gi|294495689|ref|YP_003542182.1| - 0.00016 21.3 0.0 0.78 9.3 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|294495689|ref|YP_003542182.1| - 0.00034 19.4 0.0 0.44 9.2 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus AAA_19 PF13245.1 gi|294495689|ref|YP_003542182.1| - 0.00035 20.2 0.0 0.00085 19.0 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|294495689|ref|YP_003542182.1| - 0.00046 20.4 0.0 0.0013 18.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|294495689|ref|YP_003542182.1| - 0.00095 18.7 0.0 0.0031 17.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|294495689|ref|YP_003542182.1| - 0.0026 16.9 0.1 0.0066 15.7 0.0 1.6 2 0 0 2 2 1 1 PhoH-like protein Parvo_NS1 PF01057.12 gi|294495689|ref|YP_003542182.1| - 0.0045 15.8 0.0 0.0083 15.0 0.0 1.3 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_33 PF13671.1 gi|294495689|ref|YP_003542182.1| - 0.0074 16.1 0.0 0.02 14.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|294495689|ref|YP_003542182.1| - 0.0085 16.0 0.0 0.1 12.5 0.0 2.5 3 0 0 3 3 3 1 AAA ATPase domain T2SE PF00437.15 gi|294495689|ref|YP_003542182.1| - 0.0087 14.9 0.0 0.022 13.6 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein TrwB_AAD_bind PF10412.4 gi|294495689|ref|YP_003542182.1| - 0.013 14.1 0.0 0.026 13.1 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|294495689|ref|YP_003542182.1| - 0.015 14.8 0.0 0.044 13.2 0.0 1.8 1 0 0 1 1 1 0 FtsK/SpoIIIE family NACHT PF05729.7 gi|294495689|ref|YP_003542182.1| - 0.018 14.7 0.0 0.06 12.9 0.0 1.9 2 0 0 2 2 1 0 NACHT domain IstB_IS21 PF01695.12 gi|294495689|ref|YP_003542182.1| - 0.02 14.2 0.0 0.06 12.7 0.0 1.8 2 0 0 2 2 1 0 IstB-like ATP binding protein AAA_PrkA PF08298.6 gi|294495689|ref|YP_003542182.1| - 0.023 13.3 0.0 1.5 7.4 0.0 2.3 2 0 0 2 2 2 0 PrkA AAA domain DUF815 PF05673.8 gi|294495689|ref|YP_003542182.1| - 0.028 13.3 0.0 0.055 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|294495689|ref|YP_003542182.1| - 0.03 14.6 0.0 0.077 13.2 0.0 1.7 1 0 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.7 gi|294495689|ref|YP_003542182.1| - 0.033 13.2 0.1 0.084 11.9 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.1 gi|294495689|ref|YP_003542182.1| - 0.035 14.0 0.0 0.096 12.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|294495689|ref|YP_003542182.1| - 0.04 14.7 0.0 0.13 13.0 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|294495689|ref|YP_003542182.1| - 0.064 12.6 0.0 0.17 11.3 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain KaiC PF06745.8 gi|294495690|ref|YP_003542183.1| - 2.6e-47 160.8 0.2 3e-47 160.6 0.1 1.0 1 0 0 1 1 1 1 KaiC DEAD PF00270.24 gi|294495690|ref|YP_003542183.1| - 2.9e-05 23.6 0.4 0.00019 20.9 0.3 1.9 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|294495690|ref|YP_003542183.1| - 3.3e-05 23.5 0.0 6.1e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|294495690|ref|YP_003542183.1| - 3.4e-05 23.9 0.3 0.00021 21.4 0.2 2.0 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|294495690|ref|YP_003542183.1| - 0.00014 20.3 0.0 0.00022 19.6 0.0 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein DUF2075 PF09848.4 gi|294495690|ref|YP_003542183.1| - 0.0002 20.4 0.1 0.0003 19.8 0.0 1.5 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.1 gi|294495690|ref|YP_003542183.1| - 0.0002 20.7 0.0 0.0003 20.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain RecA PF00154.16 gi|294495690|ref|YP_003542183.1| - 0.00028 20.0 0.1 0.00042 19.4 0.1 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein IstB_IS21 PF01695.12 gi|294495690|ref|YP_003542183.1| - 0.00036 20.0 0.1 0.0019 17.6 0.0 2.0 2 1 0 2 2 2 1 IstB-like ATP binding protein DnaB_C PF03796.10 gi|294495690|ref|YP_003542183.1| - 0.00055 18.9 0.0 0.00097 18.0 0.0 1.4 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain NTPase_1 PF03266.10 gi|294495690|ref|YP_003542183.1| - 0.0009 18.9 0.4 0.0022 17.7 0.3 1.7 1 1 0 1 1 1 1 NTPase T2SE PF00437.15 gi|294495690|ref|YP_003542183.1| - 0.001 18.0 0.0 0.0014 17.5 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_30 PF13604.1 gi|294495690|ref|YP_003542183.1| - 0.0017 17.9 0.3 0.0079 15.7 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|294495690|ref|YP_003542183.1| - 0.0027 17.1 0.0 0.032 13.6 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_5 PF07728.9 gi|294495690|ref|YP_003542183.1| - 0.0041 16.8 0.0 0.0083 15.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Viral_helicase1 PF01443.13 gi|294495690|ref|YP_003542183.1| - 0.0046 16.5 0.0 0.0089 15.5 0.0 1.5 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase Sigma54_activ_2 PF14532.1 gi|294495690|ref|YP_003542183.1| - 0.0057 16.6 0.0 0.0084 16.1 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain ResIII PF04851.10 gi|294495690|ref|YP_003542183.1| - 0.0058 16.4 0.2 0.012 15.4 0.1 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Zot PF05707.7 gi|294495690|ref|YP_003542183.1| - 0.006 16.0 0.1 0.017 14.6 0.0 1.6 1 1 0 2 2 2 1 Zonular occludens toxin (Zot) KTI12 PF08433.5 gi|294495690|ref|YP_003542183.1| - 0.0067 15.6 0.0 0.01 15.0 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|294495690|ref|YP_003542183.1| - 0.0074 16.2 0.0 0.011 15.6 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|294495690|ref|YP_003542183.1| - 0.0086 15.9 0.1 0.018 14.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.4 gi|294495690|ref|YP_003542183.1| - 0.011 14.4 0.1 0.017 13.7 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_24 PF13479.1 gi|294495690|ref|YP_003542183.1| - 0.014 14.9 0.2 0.035 13.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|294495690|ref|YP_003542183.1| - 0.016 14.6 0.1 0.033 13.6 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|294495690|ref|YP_003542183.1| - 0.017 15.3 0.1 0.026 14.8 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|294495690|ref|YP_003542183.1| - 0.018 15.8 0.4 0.04 14.7 0.3 1.9 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|294495690|ref|YP_003542183.1| - 0.019 14.1 0.7 0.78 8.9 0.1 2.2 1 1 1 2 2 2 0 PhoH-like protein DAP3 PF10236.4 gi|294495690|ref|YP_003542183.1| - 0.025 13.5 0.0 0.08 11.8 0.0 1.7 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 MobB PF03205.9 gi|294495690|ref|YP_003542183.1| - 0.026 14.2 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|294495690|ref|YP_003542183.1| - 0.026 14.6 0.0 0.15 12.2 0.0 2.1 2 0 0 2 2 2 0 RNA helicase TIP49 PF06068.8 gi|294495690|ref|YP_003542183.1| - 0.031 13.0 0.9 0.14 10.8 0.4 1.9 1 1 1 2 2 2 0 TIP49 C-terminus AAA PF00004.24 gi|294495690|ref|YP_003542183.1| - 0.033 14.3 0.3 0.092 12.9 0.2 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|294495690|ref|YP_003542183.1| - 0.04 13.5 0.1 0.079 12.6 0.0 1.6 1 1 0 1 1 1 0 NACHT domain ArgK PF03308.11 gi|294495690|ref|YP_003542183.1| - 0.042 12.6 0.1 0.26 10.0 0.0 1.8 2 0 0 2 2 2 0 ArgK protein CobU PF02283.11 gi|294495690|ref|YP_003542183.1| - 0.065 12.6 0.0 0.56 9.6 0.0 2.0 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Arch_ATPase PF01637.13 gi|294495690|ref|YP_003542183.1| - 0.065 12.9 0.0 0.088 12.4 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase Mg_chelatase PF01078.16 gi|294495690|ref|YP_003542183.1| - 0.083 12.0 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Helicase_RecD PF05127.9 gi|294495690|ref|YP_003542183.1| - 0.085 12.4 0.1 0.72 9.4 0.0 2.0 1 1 0 1 1 1 0 Helicase ATP-synt_ab PF00006.20 gi|294495690|ref|YP_003542183.1| - 0.092 12.2 0.0 0.092 12.2 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activat PF00158.21 gi|294495690|ref|YP_003542183.1| - 0.1 12.0 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain FtsK_SpoIIIE PF01580.13 gi|294495690|ref|YP_003542183.1| - 0.11 11.9 0.1 0.18 11.2 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Response_reg PF00072.19 gi|294495691|ref|YP_003542184.1| - 2.3e-32 111.2 0.7 4.9e-32 110.2 0.5 1.6 1 0 0 1 1 1 1 Response regulator receiver domain V4R PF02830.13 gi|294495691|ref|YP_003542184.1| - 0.015 15.1 0.2 0.033 14.0 0.1 1.6 1 0 0 1 1 1 0 V4R domain ComFB PF10719.4 gi|294495691|ref|YP_003542184.1| - 0.016 14.9 2.2 0.019 14.6 0.0 2.2 3 0 0 3 3 3 0 Late competence development protein ComFB AIRC PF00731.15 gi|294495692|ref|YP_003542185.1| - 7.5e-43 145.3 1.3 8.3e-43 145.2 0.9 1.0 1 0 0 1 1 1 1 AIR carboxylase CM_2 PF01817.16 gi|294495693|ref|YP_003542186.1| - 8.6e-18 64.2 4.5 9.6e-18 64.0 3.1 1.0 1 0 0 1 1 1 1 Chorismate mutase type II Osmo_CC PF08946.5 gi|294495693|ref|YP_003542186.1| - 0.0026 17.7 1.9 0.0052 16.7 1.3 1.5 1 0 0 1 1 1 1 Osmosensory transporter coiled coil GHMP_kinases_N PF00288.21 gi|294495694|ref|YP_003542187.1| - 3e-12 46.3 1.2 5.2e-12 45.6 0.4 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain PglZ PF08665.7 gi|294495695|ref|YP_003542188.1| - 0.11 12.1 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 PglZ domain Hydantoinase_A PF01968.13 gi|294495696|ref|YP_003542189.1| - 2.7e-78 262.9 1.1 9.5e-78 261.2 0.0 2.1 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|294495696|ref|YP_003542189.1| - 7.3e-41 139.5 4.1 9.8e-38 129.4 0.3 3.0 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|294495696|ref|YP_003542189.1| - 3.3e-10 38.8 1.8 2.8e-05 22.6 0.1 2.1 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|294495696|ref|YP_003542189.1| - 0.003 16.8 0.6 0.12 11.6 0.0 2.8 3 0 0 3 3 3 1 BadF/BadG/BcrA/BcrD ATPase family StbA PF06406.6 gi|294495696|ref|YP_003542189.1| - 0.0077 15.2 0.0 0.016 14.1 0.0 1.4 1 0 0 1 1 1 1 StbA protein Methyltransf_26 PF13659.1 gi|294495697|ref|YP_003542190.1| - 3.7e-13 49.5 0.0 6.5e-13 48.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|294495697|ref|YP_003542190.1| - 6.6e-13 48.3 0.0 9.8e-13 47.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|294495697|ref|YP_003542190.1| - 8.3e-09 35.2 0.0 1.1e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|294495697|ref|YP_003542190.1| - 6.2e-05 22.4 0.0 9.2e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_11 PF08241.7 gi|294495697|ref|YP_003542190.1| - 6.9e-05 23.2 0.0 0.0071 16.8 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|294495697|ref|YP_003542190.1| - 0.00023 20.9 0.0 0.0039 16.9 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|294495697|ref|YP_003542190.1| - 0.00036 21.0 0.0 0.00071 20.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|294495697|ref|YP_003542190.1| - 0.00059 20.2 0.0 0.0057 17.1 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.14 gi|294495697|ref|YP_003542190.1| - 0.0017 17.9 0.0 0.0064 16.0 0.0 1.9 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|294495697|ref|YP_003542190.1| - 0.035 14.4 0.0 0.066 13.5 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain PrmA PF06325.8 gi|294495697|ref|YP_003542190.1| - 0.039 13.0 0.1 0.086 11.9 0.1 1.6 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.15 gi|294495697|ref|YP_003542190.1| - 0.044 12.8 0.0 1.8 7.5 0.0 2.1 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase DUF2431 PF10354.4 gi|294495697|ref|YP_003542190.1| - 0.058 13.3 0.0 0.07 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2431) Eco57I PF07669.6 gi|294495697|ref|YP_003542190.1| - 0.11 12.9 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 Eco57I restriction-modification methylase RrnaAD PF00398.15 gi|294495698|ref|YP_003542191.1| - 4.6e-58 196.3 0.0 6e-58 195.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|294495698|ref|YP_003542191.1| - 6.5e-08 32.6 0.0 8.5e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|294495698|ref|YP_003542191.1| - 4.4e-06 27.2 0.0 6.8e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|294495698|ref|YP_003542191.1| - 0.00082 18.8 0.0 0.0012 18.2 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) PCMT PF01135.14 gi|294495698|ref|YP_003542191.1| - 0.00096 18.7 0.1 0.0014 18.1 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.12 gi|294495698|ref|YP_003542191.1| - 0.006 15.6 0.0 0.0091 15.0 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_31 PF13847.1 gi|294495698|ref|YP_003542191.1| - 0.0066 16.0 0.0 0.0086 15.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PDZ PF00595.19 gi|294495698|ref|YP_003542191.1| - 0.014 15.5 0.2 0.028 14.5 0.1 1.5 1 0 0 1 1 1 0 PDZ domain (Also known as DHR or GLGF) MTS PF05175.9 gi|294495698|ref|YP_003542191.1| - 0.018 14.4 0.0 0.031 13.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|294495698|ref|YP_003542191.1| - 0.021 15.2 0.0 0.034 14.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|294495698|ref|YP_003542191.1| - 0.026 14.8 0.0 0.044 14.1 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|294495698|ref|YP_003542191.1| - 0.033 13.9 0.0 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.13 gi|294495698|ref|YP_003542191.1| - 0.1 12.5 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 TrkA-N domain Spermine_synth PF01564.12 gi|294495698|ref|YP_003542191.1| - 0.11 11.3 0.4 0.16 10.8 0.3 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase DUF655 PF04919.7 gi|294495699|ref|YP_003542192.1| - 1.1e-70 237.0 0.2 1.2e-70 236.8 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|294495699|ref|YP_003542192.1| - 8.9e-05 22.3 0.0 0.0002 21.2 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|294495699|ref|YP_003542192.1| - 0.00037 20.4 0.0 0.00065 19.6 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.11 gi|294495700|ref|YP_003542193.1| - 6.6e-16 58.3 1.8 7.6e-16 58.1 1.3 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 EF-hand_7 PF13499.1 gi|294495700|ref|YP_003542193.1| - 0.22 11.7 1.1 2.5 8.3 0.1 2.3 2 0 0 2 2 2 0 EF-hand domain pair Ribosomal_L21e PF01157.13 gi|294495701|ref|YP_003542194.1| - 2.8e-30 104.0 0.2 3e-30 103.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.12 gi|294495702|ref|YP_003542195.1| - 2e-10 40.6 0.1 4.4e-10 39.6 0.1 1.6 1 0 0 1 1 1 1 THUMP domain TruB_N PF01509.13 gi|294495702|ref|YP_003542195.1| - 0.0022 18.1 0.3 0.051 13.7 0.1 2.5 2 1 0 2 2 2 1 TruB family pseudouridylate synthase (N terminal domain) Methyltrn_RNA_2 PF04013.7 gi|294495703|ref|YP_003542196.1| - 3e-68 229.2 0.0 3.4e-68 229.1 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase SpoU_methylase PF00588.14 gi|294495703|ref|YP_003542196.1| - 0.061 13.2 0.0 0.082 12.7 0.0 1.2 1 0 0 1 1 1 0 SpoU rRNA Methylase family AIM24 PF01987.12 gi|294495704|ref|YP_003542197.1| - 3.3e-70 235.9 0.8 3.8e-70 235.6 0.6 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Metallophos_2 PF12850.2 gi|294495705|ref|YP_003542198.1| - 5.5e-18 65.2 0.0 8.1e-18 64.7 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|294495705|ref|YP_003542198.1| - 4.5e-14 52.3 0.0 7.8e-14 51.5 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|294495705|ref|YP_003542198.1| - 5.9e-09 35.4 0.3 1e-05 24.8 0.1 2.5 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Lactamase_B_2 PF12706.2 gi|294495706|ref|YP_003542199.1| - 5e-23 81.6 0.0 6.1e-23 81.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|294495706|ref|YP_003542199.1| - 2.5e-13 50.1 1.2 9.7e-13 48.2 0.8 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|294495706|ref|YP_003542199.1| - 0.017 14.8 0.0 0.048 13.3 0.0 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Fer2_BFD PF04324.10 gi|294495707|ref|YP_003542200.1| - 1.8e-09 37.4 1.2 2.9e-09 36.8 0.9 1.3 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Zn_ribbon_2 PF12674.2 gi|294495707|ref|YP_003542200.1| - 0.089 13.1 2.7 1.5 9.2 0.1 2.5 2 1 0 2 2 2 0 Putative zinc ribbon domain DUF2283 PF10049.4 gi|294495708|ref|YP_003542201.1| - 1.2e-11 44.2 0.6 2.3e-11 43.3 0.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) N6_Mtase PF02384.11 gi|294495709|ref|YP_003542202.1| - 2.2e-108 362.0 0.0 3.1e-108 361.5 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|294495709|ref|YP_003542202.1| - 4.3e-28 98.4 0.3 4.3e-28 98.4 0.2 2.6 2 1 0 2 2 2 1 HsdM N-terminal domain UPF0020 PF01170.13 gi|294495709|ref|YP_003542202.1| - 9.2e-11 41.6 0.0 2e-10 40.5 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|294495709|ref|YP_003542202.1| - 1.4e-09 38.0 0.0 3.3e-09 36.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|294495709|ref|YP_003542202.1| - 0.0001 22.5 0.0 0.0006 20.1 0.0 2.3 1 1 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_31 PF13847.1 gi|294495709|ref|YP_003542202.1| - 0.00019 21.0 0.0 0.00084 18.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|294495709|ref|YP_003542202.1| - 0.0025 17.2 0.0 0.0059 16.0 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|294495709|ref|YP_003542202.1| - 0.0035 17.9 0.0 0.04 14.5 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|294495709|ref|YP_003542202.1| - 0.0062 15.9 0.0 0.032 13.6 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase small domain Pyrophosphatase PF00719.14 gi|294495709|ref|YP_003542202.1| - 0.0074 15.7 0.1 0.13 11.6 0.0 2.2 2 0 0 2 2 2 1 Inorganic pyrophosphatase Borrelia_orfA PF02414.10 gi|294495709|ref|YP_003542202.1| - 0.02 13.9 5.8 0.04 13.0 4.0 1.4 1 0 0 1 1 1 0 Borrelia ORF-A N6_Mtase PF02384.11 gi|294495710|ref|YP_003542203.1| - 4.7e-94 314.9 0.8 6.9e-94 314.4 0.5 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|294495710|ref|YP_003542203.1| - 1.2e-25 90.5 0.0 3.8e-25 88.8 0.0 1.9 1 0 0 1 1 1 1 HsdM N-terminal domain UPF0020 PF01170.13 gi|294495710|ref|YP_003542203.1| - 2.6e-12 46.6 0.1 7.8e-12 45.1 0.0 1.7 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|294495710|ref|YP_003542203.1| - 2.6e-11 43.5 0.0 6e-11 42.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|294495710|ref|YP_003542203.1| - 1.7e-07 31.5 0.0 5.8e-07 29.8 0.0 2.0 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_31 PF13847.1 gi|294495710|ref|YP_003542203.1| - 5.2e-07 29.3 1.1 7.5e-06 25.6 0.0 2.2 1 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|294495710|ref|YP_003542203.1| - 0.0012 18.2 0.0 0.0097 15.2 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase small domain Methylase_S PF01420.14 gi|294495711|ref|YP_003542204.1| - 1.3e-41 142.3 12.2 1.3e-26 93.5 4.7 2.4 2 1 0 2 2 2 2 Type I restriction modification DNA specificity domain PRP38 PF03371.10 gi|294495711|ref|YP_003542204.1| - 0.098 12.2 1.2 0.13 11.9 0.2 1.6 2 0 0 2 2 2 0 PRP38 family HSDR_N PF04313.9 gi|294495712|ref|YP_003542205.1| - 1.8e-33 115.9 0.1 1.1e-32 113.3 0.0 2.4 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.10 gi|294495712|ref|YP_003542205.1| - 3e-18 66.3 0.0 6.7e-18 65.1 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|294495712|ref|YP_003542205.1| - 0.0037 17.4 0.2 0.096 12.8 0.0 2.9 2 1 0 2 2 2 1 AAA domain Helicase_C PF00271.26 gi|294495712|ref|YP_003542205.1| - 0.0079 16.0 0.0 0.025 14.4 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ABC2_membrane_3 PF12698.2 gi|294495712|ref|YP_003542205.1| - 0.42 9.5 0.0 0.79 8.6 0.0 1.4 1 0 0 1 1 1 0 ABC-2 family transporter protein AAA_15 PF13175.1 gi|294495715|ref|YP_003542208.1| - 4.8e-24 85.1 52.2 1.2e-23 83.8 21.5 3.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.1 gi|294495715|ref|YP_003542208.1| - 9.1e-17 61.9 34.0 1.3e-16 61.4 14.0 3.6 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|294495715|ref|YP_003542208.1| - 1.3e-15 58.3 7.8 1.3e-15 58.3 5.4 3.0 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|294495715|ref|YP_003542208.1| - 3.2e-11 42.8 1.2 3.2e-11 42.8 0.9 2.4 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.3 gi|294495715|ref|YP_003542208.1| - 4.3e-08 32.6 2.8 3.7e-06 26.2 0.3 2.7 3 0 0 3 3 3 2 Protein of unknown function (DUF2813) AAA_29 PF13555.1 gi|294495715|ref|YP_003542208.1| - 0.00015 21.2 0.1 0.0003 20.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|294495715|ref|YP_003542208.1| - 0.0073 16.4 0.8 0.04 14.0 0.0 2.8 3 0 0 3 3 3 1 RNA helicase ABC_tran PF00005.22 gi|294495715|ref|YP_003542208.1| - 0.021 15.1 0.0 0.058 13.6 0.0 1.8 1 0 0 1 1 1 0 ABC transporter MMR_HSR1 PF01926.18 gi|294495715|ref|YP_003542208.1| - 0.063 13.2 1.5 0.21 11.5 0.0 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase Mitofilin PF09731.4 gi|294495715|ref|YP_003542208.1| - 0.11 11.1 3.9 0.15 10.6 2.7 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein SNase PF00565.12 gi|294495716|ref|YP_003542209.1| - 1.9e-08 34.5 0.4 2.9e-08 33.9 0.3 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue UvrD-helicase PF00580.16 gi|294495717|ref|YP_003542210.1| - 1.7e-65 221.4 0.2 1.1e-63 215.3 0.0 3.0 3 0 0 3 3 3 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|294495717|ref|YP_003542210.1| - 3e-51 174.9 3.5 3e-51 174.9 2.4 3.1 3 0 0 3 3 3 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|294495717|ref|YP_003542210.1| - 2.7e-45 154.7 0.2 7e-45 153.4 0.1 1.8 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|294495717|ref|YP_003542210.1| - 2.5e-11 43.1 0.0 9.7e-11 41.2 0.0 2.1 2 0 0 2 2 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|294495717|ref|YP_003542210.1| - 7e-10 38.9 1.2 4.3e-09 36.4 0.3 2.8 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain DUF2800 PF10926.3 gi|294495717|ref|YP_003542210.1| - 2.4e-07 30.2 0.3 9.2e-07 28.2 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2800) AAA_12 PF13087.1 gi|294495717|ref|YP_003542210.1| - 5.4e-05 22.6 1.0 0.0024 17.2 0.0 3.1 2 1 1 3 3 3 1 AAA domain Viral_helicase1 PF01443.13 gi|294495717|ref|YP_003542210.1| - 0.00031 20.3 4.7 1.1 8.7 0.1 4.2 3 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|294495717|ref|YP_003542210.1| - 0.0011 18.5 0.0 0.0037 16.8 0.0 1.9 1 0 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|294495717|ref|YP_003542210.1| - 0.019 14.4 0.0 0.076 12.4 0.0 2.1 1 0 0 1 1 1 0 DEAD/DEAH box helicase Dna2 PF08696.6 gi|294495717|ref|YP_003542210.1| - 0.022 14.1 0.1 0.071 12.4 0.0 1.9 2 0 0 2 2 2 0 DNA replication factor Dna2 UPF0184 PF03670.8 gi|294495717|ref|YP_003542210.1| - 0.058 13.5 3.6 7 6.9 0.1 4.1 4 0 0 4 4 4 0 Uncharacterised protein family (UPF0184) AAA_22 PF13401.1 gi|294495717|ref|YP_003542210.1| - 0.14 12.2 1.2 11 6.1 0.2 3.2 3 0 0 3 3 3 0 AAA domain SBF PF01758.11 gi|294495718|ref|YP_003542211.1| - 5.6e-25 87.8 14.6 5.6e-25 87.8 10.1 2.0 2 1 0 2 2 2 1 Sodium Bile acid symporter family PsiE PF06146.7 gi|294495719|ref|YP_003542212.1| - 5.2e-10 39.4 8.6 5.2e-10 39.4 6.0 2.0 2 0 0 2 2 2 1 Phosphate-starvation-inducible E AhpC-TSA PF00578.16 gi|294495720|ref|YP_003542213.1| - 2.8e-29 101.3 0.0 4.2e-29 100.7 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.4 gi|294495720|ref|YP_003542213.1| - 4.8e-16 58.1 0.4 8.9e-16 57.2 0.3 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.5 gi|294495720|ref|YP_003542213.1| - 1.6e-09 37.4 0.0 4.2e-09 36.0 0.0 1.7 1 1 1 2 2 2 1 Redoxin TM_helix PF05552.7 gi|294495721|ref|YP_003542214.1| - 2.7e-20 71.7 35.2 2.5e-10 39.8 2.9 5.0 5 0 0 5 5 5 3 Conserved TM helix DUF3955 PF13127.1 gi|294495722|ref|YP_003542215.1| - 0.16 11.5 0.1 0.19 11.2 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3955) MVIN PF03023.9 gi|294495723|ref|YP_003542216.1| - 0.00023 19.7 1.8 0.00027 19.4 1.3 1.1 1 0 0 1 1 1 1 MviN-like protein Polysacc_synt_C PF14667.1 gi|294495723|ref|YP_003542216.1| - 0.00035 20.3 5.3 0.00044 20.0 3.7 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis C-terminal domain UPF0060 PF02694.10 gi|294495723|ref|YP_003542216.1| - 0.73 9.8 4.8 0.37 10.8 0.7 1.9 1 1 1 2 2 2 0 Uncharacterised BCR, YnfA/UPF0060 family DUF4149 PF13664.1 gi|294495723|ref|YP_003542216.1| - 1.3 9.1 4.3 0.84 9.7 1.5 1.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4149) PMP22_Claudin PF00822.15 gi|294495723|ref|YP_003542216.1| - 4.5 6.8 8.5 0.39 10.3 1.2 2.0 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin family ABC2_membrane_5 PF13346.1 gi|294495723|ref|YP_003542216.1| - 4.7 6.4 11.3 6.5 5.9 7.8 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein NnrU PF07298.6 gi|294495724|ref|YP_003542217.1| - 4e-07 29.5 7.6 6.7e-07 28.8 5.3 1.4 1 1 0 1 1 1 1 NnrU protein PEMT PF04191.8 gi|294495724|ref|YP_003542217.1| - 0.00032 20.7 1.5 0.00032 20.7 1.0 2.4 2 1 0 2 2 2 1 Phospholipid methyltransferase HATPase_c PF02518.21 gi|294495726|ref|YP_003542219.1| - 7.8e-31 106.0 1.4 1.5e-30 105.1 0.2 2.2 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|294495726|ref|YP_003542219.1| - 4.1e-16 58.7 0.1 2.5e-15 56.2 0.0 2.3 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain Cache_1 PF02743.13 gi|294495726|ref|YP_003542219.1| - 8.1e-12 44.5 1.3 2.1e-11 43.1 0.1 2.2 2 0 0 2 2 2 1 Cache domain HATPase_c_3 PF13589.1 gi|294495726|ref|YP_003542219.1| - 1.2e-05 25.0 0.9 2e-05 24.2 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|294495726|ref|YP_003542219.1| - 0.0001 22.4 0.0 0.0001 22.4 0.0 2.3 2 0 0 2 2 2 1 HAMP domain ArsR PF09824.4 gi|294495726|ref|YP_003542219.1| - 0.023 14.0 0.0 0.063 12.5 0.0 1.7 1 0 0 1 1 1 0 ArsR transcriptional regulator Cache_2 PF08269.6 gi|294495726|ref|YP_003542219.1| - 0.026 14.5 0.0 0.11 12.5 0.0 2.0 1 0 0 1 1 1 0 Cache domain Ly49 PF08391.5 gi|294495726|ref|YP_003542219.1| - 0.21 11.7 5.6 0.16 12.0 0.4 2.4 2 0 0 2 2 2 0 Ly49-like protein, N-terminal region Rho_Binding PF08912.6 gi|294495726|ref|YP_003542219.1| - 0.6 10.4 8.4 0.51 10.6 0.2 2.8 3 0 0 3 3 3 0 Rho Binding TIR_2 PF13676.1 gi|294495728|ref|YP_003542221.1| - 5.3e-13 49.0 0.0 7.9e-13 48.4 0.0 1.3 1 0 0 1 1 1 1 TIR domain DUF866 PF05907.8 gi|294495728|ref|YP_003542221.1| - 0.0066 15.9 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF866) Nuc_deoxyrib_tr PF05014.10 gi|294495728|ref|YP_003542221.1| - 0.012 15.4 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase zinc_ribbon_5 PF13719.1 gi|294495728|ref|YP_003542221.1| - 0.024 14.2 0.2 0.21 11.2 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.1 gi|294495728|ref|YP_003542221.1| - 0.024 14.5 1.1 0.076 12.9 0.8 1.7 1 1 0 1 1 1 0 CpXC protein zf-ribbon_3 PF13248.1 gi|294495728|ref|YP_003542221.1| - 0.027 13.6 0.6 0.088 12.0 0.0 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|294495728|ref|YP_003542221.1| - 0.04 14.2 0.1 0.69 10.2 0.0 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.1 gi|294495728|ref|YP_003542221.1| - 0.041 13.5 0.2 0.49 10.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PyrI_C PF02748.10 gi|294495728|ref|YP_003542221.1| - 0.051 13.0 1.3 1.4 8.3 1.2 2.3 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Mut7-C PF01927.11 gi|294495728|ref|YP_003542221.1| - 0.069 13.1 0.0 0.086 12.8 0.0 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain TF_Zn_Ribbon PF08271.7 gi|294495728|ref|YP_003542221.1| - 0.15 11.4 1.8 0.35 10.2 0.1 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|294495728|ref|YP_003542221.1| - 0.81 9.2 5.0 3.2 7.3 0.7 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF4191 PF13829.1 gi|294495729|ref|YP_003542222.1| - 0.054 12.5 1.9 0.057 12.5 0.8 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) DUF1875 PF08961.5 gi|294495729|ref|YP_003542222.1| - 0.069 12.4 3.5 0.083 12.1 2.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1875) G6PD_N PF00479.17 gi|294495729|ref|YP_003542222.1| - 0.08 13.1 0.1 0.098 12.8 0.1 1.2 1 0 0 1 1 1 0 Glucose-6-phosphate dehydrogenase, NAD binding domain DUF217 PF02697.9 gi|294495729|ref|YP_003542222.1| - 0.57 10.4 4.8 0.21 11.8 0.6 2.1 1 1 1 2 2 2 0 Uncharacterized ACR, COG1753 XhlA PF10779.4 gi|294495729|ref|YP_003542222.1| - 9.2 6.2 7.7 23 5.0 4.6 2.2 1 1 0 1 1 1 0 Haemolysin XhlA HTH_45 PF14947.1 gi|294495730|ref|YP_003542223.1| - 0.00069 19.3 0.1 0.00069 19.3 0.1 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix Fe_dep_repress PF01325.14 gi|294495730|ref|YP_003542223.1| - 0.027 14.3 0.2 0.052 13.4 0.1 1.5 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF4364 PF14277.1 gi|294495730|ref|YP_003542223.1| - 0.13 11.8 0.0 0.14 11.7 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) EIID-AGA PF03613.9 gi|294495731|ref|YP_003542224.1| - 0.18 10.6 0.8 0.17 10.7 0.6 1.0 1 0 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component Cupin_2 PF07883.6 gi|294495732|ref|YP_003542225.1| - 9.1e-10 37.8 0.0 1.1e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|294495732|ref|YP_003542225.1| - 4.5e-07 29.6 0.0 5.7e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain ARD PF03079.9 gi|294495732|ref|YP_003542225.1| - 0.0023 17.8 0.0 0.0026 17.7 0.0 1.2 1 0 0 1 1 1 1 ARD/ARD' family Cupin_1 PF00190.17 gi|294495732|ref|YP_003542225.1| - 0.006 16.0 0.0 0.007 15.8 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.2 gi|294495732|ref|YP_003542225.1| - 0.0071 16.1 0.0 0.0083 15.9 0.0 1.1 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_6 PF12852.2 gi|294495732|ref|YP_003542225.1| - 0.0098 15.5 0.0 0.01 15.4 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|294495732|ref|YP_003542225.1| - 0.041 13.2 0.0 0.051 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Rhodanese PF00581.15 gi|294495733|ref|YP_003542226.1| - 1e-24 87.0 0.3 9e-18 64.6 0.1 2.6 2 1 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.22 gi|294495733|ref|YP_003542226.1| - 2.1e-11 43.8 0.1 6.6e-11 42.2 0.0 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily DUF4097 PF13349.1 gi|294495734|ref|YP_003542227.1| - 0.025 14.1 2.2 0.17 11.3 1.6 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4097) tRNA-synt_1e PF01406.14 gi|294495735|ref|YP_003542228.1| - 1.2e-103 346.4 0.0 1.5e-103 346.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|294495735|ref|YP_003542228.1| - 8.4e-16 57.6 0.1 7.1e-08 31.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.6 gi|294495735|ref|YP_003542228.1| - 9.7e-14 51.3 0.0 2.3e-13 50.2 0.0 1.6 1 0 0 1 1 1 1 DALR domain tRNA-synt_1f PF01921.13 gi|294495735|ref|YP_003542228.1| - 2.9e-10 39.3 0.1 7.8e-06 24.8 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|294495735|ref|YP_003542228.1| - 2.8e-09 35.5 0.0 1.2e-07 30.1 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.14 gi|294495735|ref|YP_003542228.1| - 1.1e-05 24.4 0.2 0.42 9.3 0.0 3.7 3 1 1 4 4 4 3 tRNA synthetases class I (R) tRNA-synt_1c PF00749.16 gi|294495735|ref|YP_003542228.1| - 0.036 12.7 0.0 0.13 10.8 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain DUF768 PF05589.6 gi|294495735|ref|YP_003542228.1| - 0.1 12.5 0.0 0.37 10.7 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF768) RTC PF01137.16 gi|294495736|ref|YP_003542229.1| - 3.4e-76 255.0 0.1 4e-76 254.7 0.1 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|294495736|ref|YP_003542229.1| - 5.1e-19 68.1 0.0 9.5e-19 67.3 0.0 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain DUF4397 PF14344.1 gi|294495736|ref|YP_003542229.1| - 0.099 12.9 0.2 1.3 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4397) AAA PF00004.24 gi|294495737|ref|YP_003542230.1| - 1e-95 316.9 0.0 4e-47 159.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|294495737|ref|YP_003542230.1| - 1.9e-26 91.8 0.0 1.1e-25 89.3 0.1 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|294495737|ref|YP_003542230.1| - 1.5e-16 59.7 0.0 6.2e-16 57.7 0.0 2.1 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.9 gi|294495737|ref|YP_003542230.1| - 4.4e-15 56.0 0.0 1.5e-07 31.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|294495737|ref|YP_003542230.1| - 1.1e-14 54.0 0.0 1.2e-06 27.7 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|294495737|ref|YP_003542230.1| - 1.1e-13 51.4 0.0 4.4e-05 23.6 0.0 3.6 2 1 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|294495737|ref|YP_003542230.1| - 2.5e-13 49.9 0.8 8.3e-05 22.3 0.0 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|294495737|ref|YP_003542230.1| - 2.7e-12 47.0 0.2 3.9e-05 23.7 0.0 3.0 3 1 0 3 3 2 2 AAA ATPase domain Zeta_toxin PF06414.7 gi|294495737|ref|YP_003542230.1| - 8.1e-12 44.6 0.1 4.2e-06 25.9 0.0 2.8 3 0 0 3 3 2 2 Zeta toxin AAA_14 PF13173.1 gi|294495737|ref|YP_003542230.1| - 8.4e-12 45.1 0.0 2.1e-05 24.4 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_17 PF13207.1 gi|294495737|ref|YP_003542230.1| - 4.5e-11 43.6 0.0 0.0003 21.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|294495737|ref|YP_003542230.1| - 6.7e-11 41.5 0.0 0.00037 19.3 0.0 2.6 2 0 0 2 2 2 2 TIP49 C-terminus AAA_33 PF13671.1 gi|294495737|ref|YP_003542230.1| - 2.9e-10 40.1 0.0 8.4e-05 22.4 0.0 2.8 3 0 0 3 3 2 2 AAA domain IstB_IS21 PF01695.12 gi|294495737|ref|YP_003542230.1| - 4.3e-10 39.2 0.0 0.00037 19.9 0.0 3.0 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_19 PF13245.1 gi|294495737|ref|YP_003542230.1| - 4.5e-10 39.1 1.1 0.00081 19.0 0.1 2.8 2 0 0 2 2 2 2 Part of AAA domain NACHT PF05729.7 gi|294495737|ref|YP_003542230.1| - 9.7e-09 35.0 0.2 0.033 13.8 0.0 4.0 3 1 1 4 4 4 2 NACHT domain Sigma54_activat PF00158.21 gi|294495737|ref|YP_003542230.1| - 1.1e-08 34.7 0.0 0.0024 17.3 0.0 3.5 2 1 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|294495737|ref|YP_003542230.1| - 3.6e-08 32.8 0.5 0.0047 16.1 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|294495737|ref|YP_003542230.1| - 1.2e-07 31.3 3.7 0.0035 16.7 0.1 3.7 2 2 1 3 3 3 2 AAA domain AAA_18 PF13238.1 gi|294495737|ref|YP_003542230.1| - 1.7e-07 31.5 0.0 0.027 14.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|294495737|ref|YP_003542230.1| - 2.4e-07 30.8 0.0 0.033 14.1 0.0 2.8 3 0 0 3 3 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|294495737|ref|YP_003542230.1| - 1.3e-06 28.5 0.0 0.091 12.8 0.0 2.8 3 0 0 3 3 2 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|294495737|ref|YP_003542230.1| - 3.2e-06 26.8 0.0 0.0067 16.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.12 gi|294495737|ref|YP_003542230.1| - 6.4e-06 25.2 0.1 0.011 14.6 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 ABC_tran PF00005.22 gi|294495737|ref|YP_003542230.1| - 9.4e-06 25.9 0.0 0.088 13.1 0.0 2.6 2 0 0 2 2 2 2 ABC transporter RNA_helicase PF00910.17 gi|294495737|ref|YP_003542230.1| - 1.9e-05 24.7 0.0 0.088 12.9 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_3 PF07726.6 gi|294495737|ref|YP_003542230.1| - 2.2e-05 24.0 0.0 0.18 11.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|294495737|ref|YP_003542230.1| - 2.7e-05 23.9 0.0 0.29 10.7 0.0 3.2 2 1 0 2 2 2 2 Archaeal ATPase PhoH PF02562.11 gi|294495737|ref|YP_003542230.1| - 4.5e-05 22.7 0.2 0.42 9.8 0.0 3.0 3 0 0 3 3 3 2 PhoH-like protein KaiC PF06745.8 gi|294495737|ref|YP_003542230.1| - 5e-05 22.5 0.2 0.91 8.5 0.0 3.4 2 1 0 3 3 3 2 KaiC NB-ARC PF00931.17 gi|294495737|ref|YP_003542230.1| - 6.2e-05 22.0 0.0 0.17 10.7 0.0 2.8 3 0 0 3 3 3 2 NB-ARC domain AAA_11 PF13086.1 gi|294495737|ref|YP_003542230.1| - 7.6e-05 22.3 0.0 0.18 11.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain UPF0079 PF02367.12 gi|294495737|ref|YP_003542230.1| - 0.0002 20.9 0.0 0.91 9.1 0.0 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 DUF2075 PF09848.4 gi|294495737|ref|YP_003542230.1| - 0.00024 20.2 0.0 0.27 10.1 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|294495737|ref|YP_003542230.1| - 0.00036 20.1 0.0 0.56 9.7 0.0 2.8 3 0 0 3 3 2 1 AAA domain Vps4_C PF09336.5 gi|294495737|ref|YP_003542230.1| - 0.00037 20.3 0.1 1.1 9.1 0.0 3.0 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain DUF815 PF05673.8 gi|294495737|ref|YP_003542230.1| - 0.0011 17.9 0.0 0.65 8.8 0.0 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) ResIII PF04851.10 gi|294495737|ref|YP_003542230.1| - 0.0013 18.5 0.0 1.6 8.5 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SKI PF01202.17 gi|294495737|ref|YP_003542230.1| - 0.0021 17.9 0.0 0.96 9.2 0.0 2.5 2 0 0 2 2 2 1 Shikimate kinase Bac_DnaA PF00308.13 gi|294495737|ref|YP_003542230.1| - 0.0043 16.7 0.0 1.1 8.7 0.0 2.7 2 1 0 2 2 2 1 Bacterial dnaA protein AFG1_ATPase PF03969.11 gi|294495737|ref|YP_003542230.1| - 0.0058 15.4 0.0 1.8 7.2 0.0 2.4 2 0 0 2 2 2 1 AFG1-like ATPase T2SE PF00437.15 gi|294495737|ref|YP_003542230.1| - 0.0063 15.4 0.0 3.3 6.5 0.0 2.8 3 0 0 3 3 2 0 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|294495737|ref|YP_003542230.1| - 0.0088 15.7 0.0 8.3 6.0 0.0 3.2 2 1 1 3 3 3 0 NTPase Cytidylate_kin2 PF13189.1 gi|294495737|ref|YP_003542230.1| - 0.011 15.6 0.1 1.6 8.5 0.0 2.6 3 0 0 3 3 2 0 Cytidylate kinase-like family KAP_NTPase PF07693.9 gi|294495737|ref|YP_003542230.1| - 0.012 14.6 0.2 3.2 6.6 0.0 2.7 2 2 0 3 3 2 0 KAP family P-loop domain AAA_23 PF13476.1 gi|294495737|ref|YP_003542230.1| - 0.013 15.8 0.1 1.1 9.5 0.0 2.9 4 0 0 4 4 2 0 AAA domain Guanylate_kin PF00625.16 gi|294495737|ref|YP_003542230.1| - 0.038 13.4 0.1 14 5.1 0.0 3.5 2 2 2 4 4 4 0 Guanylate kinase CPT PF07931.7 gi|294495737|ref|YP_003542230.1| - 0.038 13.6 0.0 3.8 7.1 0.0 2.6 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein ATP-synt_ab PF00006.20 gi|294495737|ref|YP_003542230.1| - 0.041 13.3 0.0 4.5 6.7 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.1 gi|294495737|ref|YP_003542230.1| - 0.043 13.3 0.0 8.1 6.0 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain cobW PF02492.14 gi|294495737|ref|YP_003542230.1| - 0.044 13.2 0.1 11 5.4 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DEAD PF00270.24 gi|294495737|ref|YP_003542230.1| - 0.055 12.9 0.3 49 3.3 0.0 3.6 2 2 1 3 3 3 0 DEAD/DEAH box helicase AAA_10 PF12846.2 gi|294495737|ref|YP_003542230.1| - 0.063 12.7 0.2 4.7 6.5 0.0 2.7 2 1 0 2 2 2 0 AAA-like domain PduV-EutP PF10662.4 gi|294495737|ref|YP_003542230.1| - 0.074 12.5 0.0 12 5.3 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation GvpD PF07088.6 gi|294495737|ref|YP_003542230.1| - 0.075 11.3 0.0 7.8 4.6 0.0 2.2 2 0 0 2 2 2 0 GvpD gas vesicle protein KTI12 PF08433.5 gi|294495737|ref|YP_003542230.1| - 0.15 11.2 0.0 13 4.8 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 SNARE_assoc PF09335.6 gi|294495738|ref|YP_003542231.1| - 6.3e-07 29.6 5.0 6.3e-07 29.6 3.4 2.2 1 1 1 2 2 2 1 SNARE associated Golgi protein Pex24p PF06398.6 gi|294495738|ref|YP_003542231.1| - 0.18 10.5 4.3 0.32 9.7 2.4 1.9 1 1 0 1 1 1 0 Integral peroxisomal membrane peroxin PPDK_N PF01326.14 gi|294495739|ref|YP_003542232.1| - 1.1e-78 264.5 0.0 9.5e-78 261.5 0.0 2.0 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|294495739|ref|YP_003542232.1| - 1.2e-20 72.8 0.5 3.4e-20 71.3 0.3 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Pyridox_oxidase PF01243.15 gi|294495740|ref|YP_003542233.1| - 8.5e-09 35.3 0.0 1.2e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF1059 PF06348.6 gi|294495741|ref|YP_003542234.1| - 7.4e-09 35.3 1.3 1.1e-08 34.7 0.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) PhosphMutase PF10143.4 gi|294495741|ref|YP_003542234.1| - 0.029 14.0 0.0 0.034 13.7 0.0 1.0 1 0 0 1 1 1 0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase RE_ApaLI PF09499.5 gi|294495741|ref|YP_003542234.1| - 0.13 11.6 0.0 0.15 11.4 0.0 1.0 1 0 0 1 1 1 0 ApaLI-like restriction endonuclease CMD PF02627.15 gi|294495742|ref|YP_003542235.1| - 4.1e-08 32.9 0.0 4.7e-08 32.7 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Cytochrom_C PF00034.16 gi|294495743|ref|YP_003542236.1| - 2.4e-08 34.7 0.0 4.2e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.1 gi|294495743|ref|YP_003542236.1| - 1.1e-06 28.7 0.0 2e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Hexapep PF00132.19 gi|294495744|ref|YP_003542237.1| - 7.1e-24 82.2 12.8 5.8e-12 44.5 1.4 4.2 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|294495744|ref|YP_003542237.1| - 1.3e-10 40.6 8.8 3.4e-08 32.8 2.0 3.6 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase HAS-barrel PF09378.5 gi|294495744|ref|YP_003542237.1| - 0.0027 17.5 0.4 0.0067 16.3 0.1 1.8 2 0 0 2 2 2 1 HAS barrel domain dsDNA_bind PF01984.15 gi|294495745|ref|YP_003542238.1| - 0.052 13.5 1.4 0.082 12.9 0.9 1.3 1 1 0 1 1 1 0 Double-stranded DNA-binding domain Laminin_N PF00055.12 gi|294495745|ref|YP_003542238.1| - 0.13 11.2 1.9 0.14 11.1 1.3 1.2 1 1 0 1 1 1 0 Laminin N-terminal (Domain VI) C_GCAxxG_C_C PF09719.5 gi|294495746|ref|YP_003542239.1| - 2.2e-21 75.8 0.0 2.7e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 Putative redox-active protein (C_GCAxxG_C_C) DUF830 PF05708.7 gi|294495746|ref|YP_003542239.1| - 0.018 15.0 0.0 0.026 14.5 0.0 1.3 1 0 0 1 1 1 0 Orthopoxvirus protein of unknown function (DUF830) Flavodoxin_3 PF12641.2 gi|294495747|ref|YP_003542240.1| - 2.8e-23 82.0 0.0 3.3e-23 81.8 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|294495747|ref|YP_003542240.1| - 1.1e-07 31.3 0.0 0.0006 19.1 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin Flavodoxin_5 PF12724.2 gi|294495747|ref|YP_003542240.1| - 4.3e-07 30.0 0.0 9.7e-07 28.8 0.0 1.6 1 1 1 2 2 2 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|294495747|ref|YP_003542240.1| - 1.6e-05 24.9 0.0 2.8e-05 24.1 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin GSHPx PF00255.14 gi|294495747|ref|YP_003542240.1| - 0.059 12.7 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Glutathione peroxidase Usp PF00582.21 gi|294495748|ref|YP_003542241.1| - 3e-37 127.9 1.2 3.3e-37 127.7 0.8 1.0 1 0 0 1 1 1 1 Universal stress protein family Aldo_ket_red PF00248.16 gi|294495748|ref|YP_003542241.1| - 0.034 12.9 0.0 0.042 12.6 0.0 1.2 1 0 0 1 1 1 0 Aldo/keto reductase family GARS_N PF02844.10 gi|294495748|ref|YP_003542241.1| - 0.094 13.1 0.0 0.2 12.1 0.0 1.7 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain MvaI_BcnI PF15515.1 gi|294495749|ref|YP_003542242.1| - 0.095 12.6 0.6 0.11 12.4 0.4 1.2 1 0 0 1 1 1 0 MvaI/BcnI restriction endonuclease family DNA_pol_B_thumb PF14791.1 gi|294495750|ref|YP_003542243.1| - 9.3e-25 86.1 0.1 3.3e-24 84.3 0.0 2.0 2 0 0 2 2 2 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|294495750|ref|YP_003542243.1| - 2.8e-18 65.8 4.8 4.6e-16 58.7 0.1 3.5 3 0 0 3 3 3 2 Helix-hairpin-helix domain PHP PF02811.14 gi|294495750|ref|YP_003542243.1| - 5.3e-17 62.1 0.1 1.5e-16 60.7 0.0 1.7 1 0 0 1 1 1 1 PHP domain HHH_5 PF14520.1 gi|294495750|ref|YP_003542243.1| - 4.1e-10 39.6 2.2 4.1e-06 26.8 0.3 3.1 2 0 0 2 2 2 2 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|294495750|ref|YP_003542243.1| - 3.2e-07 30.0 0.6 0.11 12.5 0.0 4.1 3 0 0 3 3 3 2 IMS family HHH motif HHH_2 PF12826.2 gi|294495750|ref|YP_003542243.1| - 8.5e-06 25.5 0.1 0.027 14.3 0.0 3.0 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH PF00633.18 gi|294495750|ref|YP_003542243.1| - 5.5e-05 22.6 0.3 0.052 13.2 0.0 3.3 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.1 gi|294495750|ref|YP_003542243.1| - 0.00018 21.5 0.1 0.00072 19.5 0.0 2.0 2 0 0 2 2 2 1 DNA polymerase beta palm HHH_3 PF12836.2 gi|294495750|ref|YP_003542243.1| - 0.00035 20.4 1.9 0.15 12.0 0.0 4.2 4 1 0 4 4 4 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|294495750|ref|YP_003542243.1| - 0.024 14.1 0.0 0.48 10.0 0.0 2.8 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda Ribosomal_S13 PF00416.17 gi|294495750|ref|YP_003542243.1| - 0.044 14.2 0.5 2.5 8.5 0.1 2.9 1 1 1 2 2 2 0 Ribosomal protein S13/S18 HRDC PF00570.18 gi|294495750|ref|YP_003542243.1| - 0.11 12.2 1.0 8.1 6.2 0.1 3.0 3 0 0 3 3 3 0 HRDC domain SIS PF01380.17 gi|294495750|ref|YP_003542243.1| - 0.11 12.1 0.0 4.2 6.9 0.0 2.8 3 0 0 3 3 3 0 SIS domain DNA_ligase_A_M PF01068.16 gi|294495751|ref|YP_003542244.1| - 2.4e-52 177.2 1.8 3.9e-52 176.5 1.2 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|294495751|ref|YP_003542244.1| - 1.5e-40 138.8 0.2 3.1e-40 137.8 0.1 1.5 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|294495751|ref|YP_003542244.1| - 7.4e-23 80.7 0.0 1.7e-22 79.6 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|294495751|ref|YP_003542244.1| - 3.5e-06 26.5 0.3 0.00011 21.8 0.3 2.9 2 1 0 2 2 2 1 DNA ligase OB-like domain mRNA_cap_enzyme PF01331.14 gi|294495751|ref|YP_003542244.1| - 0.0002 21.1 0.5 0.003 17.2 0.3 2.3 1 1 0 1 1 1 1 mRNA capping enzyme, catalytic domain DUF1804 PF08822.6 gi|294495751|ref|YP_003542244.1| - 0.044 13.5 0.0 0.97 9.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) PRC PF05239.11 gi|294495752|ref|YP_003542245.1| - 7e-09 35.4 0.0 8.4e-09 35.1 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain Abhydrolase_5 PF12695.2 gi|294495753|ref|YP_003542246.1| - 2.2e-18 66.3 0.0 2.8e-18 66.0 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|294495753|ref|YP_003542246.1| - 1.4e-09 38.1 0.0 0.00085 19.2 0.0 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|294495753|ref|YP_003542246.1| - 1.6e-07 30.8 0.0 2.1e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_2 PF02230.11 gi|294495753|ref|YP_003542246.1| - 5.1e-05 22.8 0.0 0.092 12.1 0.0 2.1 1 1 0 2 2 2 2 Phospholipase/Carboxylesterase Peptidase_S9 PF00326.16 gi|294495753|ref|YP_003542246.1| - 5.4e-05 22.4 0.3 0.16 11.2 0.1 2.6 2 1 1 3 3 3 2 Prolyl oligopeptidase family BAAT_C PF08840.6 gi|294495753|ref|YP_003542246.1| - 9.9e-05 22.1 0.1 0.00071 19.3 0.0 1.9 1 1 1 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal PAF-AH_p_II PF03403.8 gi|294495753|ref|YP_003542246.1| - 0.038 12.2 0.0 0.39 8.9 0.0 1.9 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II PAS_8 PF13188.1 gi|294495753|ref|YP_003542246.1| - 0.074 12.9 0.0 0.4 10.6 0.0 2.0 2 0 0 2 2 2 0 PAS domain Peptidase_S15 PF02129.13 gi|294495753|ref|YP_003542246.1| - 0.1 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) Pribosyltran PF00156.22 gi|294495754|ref|YP_003542247.1| - 7.8e-30 103.1 0.6 1e-29 102.7 0.4 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|294495754|ref|YP_003542247.1| - 3.3e-06 26.4 0.0 6.8e-06 25.4 0.0 1.5 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|294495754|ref|YP_003542247.1| - 5.4e-06 25.8 0.0 8.5e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase AstE_AspA PF04952.9 gi|294495755|ref|YP_003542248.1| - 2.3e-49 167.8 0.0 2.6e-49 167.6 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF2817 PF10994.3 gi|294495755|ref|YP_003542248.1| - 0.00024 20.3 0.0 0.04 13.0 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF2817) DUF2119 PF09892.4 gi|294495755|ref|YP_003542248.1| - 0.14 11.4 0.0 0.24 10.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2119) RimK PF08443.6 gi|294495756|ref|YP_003542249.1| - 1.7e-64 216.8 0.0 2.3e-64 216.3 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|294495756|ref|YP_003542249.1| - 3.7e-18 65.2 0.4 5.6e-18 64.6 0.3 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|294495756|ref|YP_003542249.1| - 2.2e-13 50.3 0.0 3.5e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|294495756|ref|YP_003542249.1| - 9.6e-10 38.5 0.1 1.8e-09 37.6 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|294495756|ref|YP_003542249.1| - 0.00012 21.5 0.6 0.00073 18.9 0.4 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_ST PF14397.1 gi|294495756|ref|YP_003542249.1| - 0.00063 18.9 0.1 0.36 9.8 0.0 2.5 3 0 0 3 3 3 2 Sugar-transfer associated ATP-grasp ATP-grasp_2 PF08442.5 gi|294495756|ref|YP_003542249.1| - 0.01 15.2 0.2 0.02 14.3 0.1 1.4 1 0 0 1 1 1 0 ATP-grasp domain TTL PF03133.10 gi|294495756|ref|YP_003542249.1| - 0.031 13.2 0.0 2.6 6.8 0.0 2.3 2 0 0 2 2 2 0 Tubulin-tyrosine ligase family GARS_A PF01071.14 gi|294495756|ref|YP_003542249.1| - 0.049 13.1 0.1 0.086 12.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Zn_protease PF05618.6 gi|294495757|ref|YP_003542250.1| - 7.5e-33 113.1 0.0 9.2e-33 112.8 0.0 1.0 1 0 0 1 1 1 1 Putative ATP-dependant zinc protease RVP PF00077.15 gi|294495757|ref|YP_003542250.1| - 0.026 14.4 0.1 0.88 9.5 0.0 2.6 1 1 0 1 1 1 0 Retroviral aspartyl protease TRAM PF01938.15 gi|294495759|ref|YP_003542252.1| - 1e-17 63.6 2.1 1.1e-17 63.5 1.4 1.0 1 0 0 1 1 1 1 TRAM domain EXOSC1 PF10447.4 gi|294495759|ref|YP_003542252.1| - 0.049 13.5 0.1 0.36 10.8 0.0 1.9 2 0 0 2 2 2 0 Exosome component EXOSC1/CSL4 S1 PF00575.18 gi|294495759|ref|YP_003542252.1| - 0.18 11.9 3.6 0.55 10.3 0.4 2.2 1 1 1 2 2 2 0 S1 RNA binding domain DEAD PF00270.24 gi|294495760|ref|YP_003542253.1| - 6.6e-51 172.1 1.0 1.4e-50 171.0 0.1 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|294495760|ref|YP_003542253.1| - 1.9e-26 91.7 0.2 5.5e-26 90.2 0.1 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|294495760|ref|YP_003542253.1| - 6.1e-05 22.9 0.1 0.00024 20.9 0.0 2.0 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit CMS1 PF14617.1 gi|294495760|ref|YP_003542253.1| - 0.00027 20.0 0.1 0.001 18.2 0.1 1.9 2 0 0 2 2 2 1 U3-containing 90S pre-ribosomal complex subunit Helicase_RecD PF05127.9 gi|294495760|ref|YP_003542253.1| - 0.0003 20.4 0.1 0.00088 18.9 0.0 1.9 2 1 0 2 2 2 1 Helicase PhoH PF02562.11 gi|294495760|ref|YP_003542253.1| - 0.0021 17.3 0.9 0.026 13.7 0.6 2.4 1 1 0 1 1 1 1 PhoH-like protein AAA_30 PF13604.1 gi|294495760|ref|YP_003542253.1| - 0.003 17.1 0.1 0.015 14.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|294495760|ref|YP_003542253.1| - 0.004 16.8 0.3 0.12 12.0 0.0 3.1 4 0 0 4 4 4 1 Part of AAA domain DUF1253 PF06862.7 gi|294495760|ref|YP_003542253.1| - 0.0078 14.6 0.6 0.2 10.0 0.0 2.8 2 1 0 2 2 2 1 Protein of unknown function (DUF1253) Helicase_C_2 PF13307.1 gi|294495760|ref|YP_003542253.1| - 0.058 13.3 0.1 3 7.7 0.0 2.5 2 1 1 3 3 3 0 Helicase C-terminal domain Lactamase_B_2 PF12706.2 gi|294495761|ref|YP_003542254.1| - 1.6e-08 34.3 2.9 3.6e-08 33.2 2.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|294495761|ref|YP_003542254.1| - 3.9e-08 33.1 0.0 4.1e-07 29.8 0.0 2.1 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|294495761|ref|YP_003542254.1| - 1.6e-05 24.6 0.0 2.2e-05 24.2 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF4336 PF14234.1 gi|294495761|ref|YP_003542254.1| - 0.093 11.8 0.2 0.2 10.7 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4336) TrkA_C PF02080.16 gi|294495762|ref|YP_003542255.1| - 4.2e-12 45.4 0.1 9.9e-12 44.2 0.1 1.7 2 0 0 2 2 2 1 TrkA-C domain CRT10 PF08728.5 gi|294495763|ref|YP_003542256.1| - 0.094 10.6 0.0 0.094 10.6 0.0 1.0 1 0 0 1 1 1 0 CRT10 DUF2208 PF09973.4 gi|294495763|ref|YP_003542256.1| - 0.11 11.7 0.3 0.1 11.8 0.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) Amidohydro_2 PF04909.9 gi|294495764|ref|YP_003542257.1| - 1.4e-12 47.7 0.0 1.5e-12 47.6 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase WHG PF13305.1 gi|294495764|ref|YP_003542257.1| - 0.0092 16.5 0.0 0.017 15.6 0.0 1.4 1 0 0 1 1 1 1 WHG domain DZR PF12773.2 gi|294495765|ref|YP_003542258.1| - 0.017 14.8 1.5 0.021 14.6 1.0 1.3 1 1 0 1 1 1 0 Double zinc ribbon ASFV_p27 PF06556.6 gi|294495765|ref|YP_003542258.1| - 0.074 12.9 0.7 0.073 12.9 0.5 1.2 1 0 0 1 1 1 0 IAP-like protein p27 C-terminus Tnp_zf-ribbon_2 PF13842.1 gi|294495765|ref|YP_003542258.1| - 1.5 9.3 5.2 2.2 8.7 3.6 1.6 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon DUF2197 PF09963.4 gi|294495765|ref|YP_003542258.1| - 6 6.9 7.3 17 5.4 5.1 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2197) Ldh_1_N PF00056.18 gi|294495766|ref|YP_003542259.1| - 6.4e-41 139.4 1.7 9e-41 138.9 1.2 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|294495766|ref|YP_003542259.1| - 3.3e-32 111.6 0.0 5.2e-32 110.9 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|294495766|ref|YP_003542259.1| - 0.0001 21.7 4.2 0.0012 18.3 2.9 2.1 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glyco_hydro_4 PF02056.11 gi|294495766|ref|YP_003542259.1| - 0.00052 19.3 2.4 0.002 17.4 0.1 2.3 1 1 1 2 2 2 1 Family 4 glycosyl hydrolase ThiF PF00899.16 gi|294495766|ref|YP_003542259.1| - 0.00067 19.4 1.0 0.0012 18.6 0.2 1.8 2 0 0 2 2 2 1 ThiF family F420_oxidored PF03807.12 gi|294495766|ref|YP_003542259.1| - 0.01 16.2 5.3 0.73 10.3 0.5 3.4 2 1 1 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|294495766|ref|YP_003542259.1| - 0.089 12.5 0.1 15 5.2 0.0 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GntP_permease PF02447.11 gi|294495767|ref|YP_003542260.1| - 3.5e-26 91.6 27.6 1.5e-23 83.0 19.2 2.1 1 1 0 1 1 1 1 GntP family permease Macro PF01661.16 gi|294495768|ref|YP_003542261.1| - 8.3e-46 154.7 0.2 1e-45 154.4 0.2 1.1 1 0 0 1 1 1 1 Macro domain GPI2 PF06432.6 gi|294495769|ref|YP_003542262.1| - 0.019 14.3 0.3 0.019 14.2 0.2 1.1 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase DUF3953 PF13129.1 gi|294495769|ref|YP_003542262.1| - 0.051 13.2 1.1 0.051 13.2 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3953) DUF454 PF04304.8 gi|294495769|ref|YP_003542262.1| - 0.1 12.6 0.1 0.1 12.6 0.0 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF454) ABC2_membrane_5 PF13346.1 gi|294495769|ref|YP_003542262.1| - 0.14 11.4 7.7 0.18 11.0 5.3 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein NYN PF01936.13 gi|294495770|ref|YP_003542263.1| - 2e-20 73.5 0.1 3.1e-20 72.9 0.1 1.3 1 0 0 1 1 1 1 NYN domain DUF4649 PF15507.1 gi|294495771|ref|YP_003542264.1| - 1.8 8.4 6.7 8.5 6.2 0.2 3.5 3 1 1 4 4 4 0 Domain of unknown function (DUF4649) DUF4043 PF13252.1 gi|294495772|ref|YP_003542265.1| - 0.11 11.5 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4043) IncA PF04156.9 gi|294495774|ref|YP_003542267.1| - 0.0028 17.2 0.1 0.004 16.7 0.1 1.1 1 0 0 1 1 1 1 IncA protein DUF948 PF06103.6 gi|294495774|ref|YP_003542267.1| - 0.0079 16.0 1.8 0.031 14.1 0.1 2.2 2 1 0 2 2 2 1 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.7 gi|294495774|ref|YP_003542267.1| - 0.02 14.6 0.5 0.043 13.5 0.1 1.8 2 0 0 2 2 2 0 Laminin Domain II Chordopox_A13L PF05961.6 gi|294495774|ref|YP_003542267.1| - 0.038 13.9 0.4 0.072 13.0 0.3 1.5 1 0 0 1 1 1 0 Chordopoxvirus A13L protein Uteroglobin PF01099.12 gi|294495774|ref|YP_003542267.1| - 0.045 13.5 0.1 0.11 12.3 0.1 1.7 1 0 0 1 1 1 0 Uteroglobin family MFS_Mycoplasma PF07672.8 gi|294495774|ref|YP_003542267.1| - 0.054 12.6 0.3 0.067 12.3 0.2 1.1 1 0 0 1 1 1 0 Mycoplasma MFS transporter Apolipoprotein PF01442.13 gi|294495774|ref|YP_003542267.1| - 0.061 12.8 1.4 0.078 12.4 1.0 1.4 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain EphA2_TM PF14575.1 gi|294495774|ref|YP_003542267.1| - 0.064 13.6 0.1 0.1 13.0 0.1 1.3 1 0 0 1 1 1 0 Ephrin type-A receptor 2 transmembrane domain DUF3139 PF11337.3 gi|294495774|ref|YP_003542267.1| - 0.068 13.4 2.2 0.11 12.7 0.9 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) ImcF-related_N PF14331.1 gi|294495774|ref|YP_003542267.1| - 0.099 11.5 0.2 4 6.2 0.0 2.1 2 0 0 2 2 2 0 ImcF-related N-terminal domain IDO PF01231.13 gi|294495774|ref|YP_003542267.1| - 0.12 10.7 1.6 0.24 9.7 0.2 1.8 1 1 1 2 2 2 0 Indoleamine 2,3-dioxygenase KxDL PF10241.4 gi|294495774|ref|YP_003542267.1| - 0.14 12.0 2.5 0.14 12.0 0.4 2.0 2 1 0 2 2 2 0 Uncharacterized conserved protein DltD_C PF04914.7 gi|294495774|ref|YP_003542267.1| - 0.17 11.7 2.9 0.74 9.6 0.4 2.1 2 0 0 2 2 2 0 DltD C-terminal region DivIC PF04977.10 gi|294495774|ref|YP_003542267.1| - 5.9 6.4 6.6 2.6 7.5 0.5 2.5 2 1 0 2 2 2 0 Septum formation initiator Metallophos_2 PF12850.2 gi|294495776|ref|YP_003542269.1| - 4.3e-22 78.6 0.4 5.1e-22 78.3 0.3 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|294495776|ref|YP_003542269.1| - 0.0001 21.5 0.1 0.32 10.0 0.0 2.2 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|294495776|ref|YP_003542269.1| - 0.00025 20.4 3.1 0.21 10.9 2.2 2.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase HCBP_related PF06594.6 gi|294495776|ref|YP_003542269.1| - 0.012 15.2 0.0 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 Haemolysin-type calcium binding protein related domain Rsa3 PF14615.1 gi|294495776|ref|YP_003542269.1| - 0.054 12.7 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Ribosome-assembly protein 3 DUF624 PF04854.9 gi|294495777|ref|YP_003542270.1| - 0.11 12.3 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF624 CcmD PF04995.9 gi|294495777|ref|YP_003542270.1| - 0.73 9.6 3.9 1.3 8.8 2.1 1.7 1 1 1 2 2 2 0 Heme exporter protein D (CcmD) SSF PF00474.12 gi|294495778|ref|YP_003542271.1| - 5.8e-62 209.6 39.4 9.4e-62 208.9 27.3 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family DUF2611 PF11022.3 gi|294495778|ref|YP_003542271.1| - 0.29 11.2 2.2 1.3 9.1 0.3 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2611) RCR PF12273.3 gi|294495778|ref|YP_003542271.1| - 0.55 10.8 7.0 6.3 7.3 0.1 2.7 2 0 0 2 2 2 0 Chitin synthesis regulation, resistance to Congo red DUF1638 PF07796.6 gi|294495779|ref|YP_003542272.1| - 1e-39 135.8 0.0 1.2e-39 135.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) CTP_transf_2 PF01467.21 gi|294495780|ref|YP_003542273.1| - 6.5e-20 71.7 0.0 1.3e-19 70.8 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|294495780|ref|YP_003542273.1| - 0.013 15.1 0.1 0.16 11.5 0.0 2.2 1 1 1 2 2 2 0 FAD synthetase HIGH_NTase1 PF05636.6 gi|294495780|ref|YP_003542273.1| - 0.14 11.2 0.1 3.5 6.5 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase Aminotran_1_2 PF00155.16 gi|294495781|ref|YP_003542274.1| - 1.5e-67 228.1 0.0 1.7e-67 227.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|294495781|ref|YP_003542274.1| - 2.9e-05 22.9 0.0 0.00093 18.0 0.0 2.2 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|294495781|ref|YP_003542274.1| - 0.00075 18.7 0.0 0.0015 17.7 0.0 1.5 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|294495781|ref|YP_003542274.1| - 0.0016 17.5 0.0 0.0025 16.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|294495781|ref|YP_003542274.1| - 0.0035 15.6 0.0 0.0053 15.0 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DMRL_synthase PF00885.14 gi|294495782|ref|YP_003542275.1| - 9.5e-34 116.1 0.1 1e-33 116.0 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DMRL_synthase PF00885.14 gi|294495783|ref|YP_003542276.1| - 2.1e-20 72.8 0.3 2.7e-20 72.5 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DUF3667 PF12412.3 gi|294495783|ref|YP_003542276.1| - 0.13 11.5 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3667) Aminotran_5 PF00266.14 gi|294495784|ref|YP_003542277.1| - 1e-44 152.8 0.0 1.2e-44 152.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|294495784|ref|YP_003542277.1| - 0.00026 20.2 0.1 0.00074 18.7 0.0 1.6 2 1 0 2 2 2 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|294495784|ref|YP_003542277.1| - 0.00086 18.3 0.0 0.002 17.1 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class I and II CBS PF00571.23 gi|294495785|ref|YP_003542278.1| - 5.2e-18 64.5 1.9 1e-11 44.4 0.2 2.3 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.17 gi|294495785|ref|YP_003542278.1| - 2.5e-13 49.6 0.2 6.1e-13 48.4 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|294495785|ref|YP_003542278.1| - 1.1e-10 41.5 0.0 1.6e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|294495785|ref|YP_003542278.1| - 3.8e-09 36.4 0.0 7.4e-09 35.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|294495785|ref|YP_003542278.1| - 0.00081 19.1 0.1 0.0018 18.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|294495785|ref|YP_003542278.1| - 0.0039 16.7 0.0 0.0075 15.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|294495785|ref|YP_003542278.1| - 0.0061 16.7 0.0 0.014 15.5 0.0 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Pou PF00157.12 gi|294495785|ref|YP_003542278.1| - 0.043 13.4 0.2 0.16 11.6 0.1 2.0 2 1 0 2 2 2 0 Pou domain - N-terminal to homeobox domain Glyoxalase PF00903.20 gi|294495785|ref|YP_003542278.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.3 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EF-hand_6 PF13405.1 gi|294495785|ref|YP_003542278.1| - 0.11 12.3 0.1 5.6 7.1 0.0 2.4 2 0 0 2 2 2 0 EF-hand domain Na_Ca_ex PF01699.19 gi|294495786|ref|YP_003542279.1| - 1.6e-50 170.3 24.4 1.7e-28 98.9 4.1 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Usp PF00582.21 gi|294495787|ref|YP_003542280.1| - 1.4e-20 73.8 0.0 1.6e-20 73.7 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family GARS_N PF02844.10 gi|294495787|ref|YP_003542280.1| - 0.026 14.9 0.2 0.055 13.9 0.1 1.6 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain VIT1 PF01988.14 gi|294495788|ref|YP_003542281.1| - 3.2e-26 92.1 15.7 1.7e-23 83.2 10.9 2.0 1 1 0 1 1 1 1 VIT family Response_reg PF00072.19 gi|294495789|ref|YP_003542282.1| - 5.1e-20 71.5 2.2 5.8e-20 71.3 1.5 1.0 1 0 0 1 1 1 1 Response regulator receiver domain SIS PF01380.17 gi|294495789|ref|YP_003542282.1| - 0.04 13.5 0.0 0.054 13.0 0.0 1.2 1 0 0 1 1 1 0 SIS domain Desulfoferrodox PF01880.13 gi|294495790|ref|YP_003542283.1| - 1.5e-29 102.1 0.1 2.2e-29 101.5 0.1 1.3 1 0 0 1 1 1 1 Desulfoferrodoxin PA14 PF07691.7 gi|294495790|ref|YP_003542283.1| - 0.077 12.6 0.0 0.36 10.4 0.0 1.9 2 0 0 2 2 2 0 PA14 domain Cytochrom_C_asm PF01578.15 gi|294495791|ref|YP_003542284.1| - 0.00091 18.8 0.8 0.001 18.6 0.5 1.0 1 0 0 1 1 1 1 Cytochrome C assembly protein FtsX PF02687.16 gi|294495791|ref|YP_003542284.1| - 0.024 14.4 4.7 0.03 14.0 3.2 1.1 1 0 0 1 1 1 0 FtsX-like permease family PalH PF08733.5 gi|294495791|ref|YP_003542284.1| - 0.041 12.7 1.5 0.041 12.7 1.0 1.0 1 0 0 1 1 1 0 PalH/RIM21 DUF2678 PF10856.3 gi|294495791|ref|YP_003542284.1| - 0.11 12.2 2.0 0.13 12.0 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2678) Tic20 PF09685.5 gi|294495791|ref|YP_003542284.1| - 0.22 11.5 3.7 0.25 11.3 2.5 1.1 1 0 0 1 1 1 0 Tic20-like protein DUF2976 PF11190.3 gi|294495791|ref|YP_003542284.1| - 2.1 7.9 6.5 4.1 7.0 4.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2976) APG9 PF04109.11 gi|294495792|ref|YP_003542285.1| - 0.002 17.0 0.7 0.0021 17.0 0.5 1.0 1 0 0 1 1 1 1 Autophagy protein Apg9 DUF2157 PF09925.4 gi|294495792|ref|YP_003542285.1| - 0.083 12.4 0.1 0.085 12.4 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) AA_permease PF00324.16 gi|294495793|ref|YP_003542286.1| - 2.2e-39 135.1 39.3 2.7e-39 134.8 27.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|294495793|ref|YP_003542286.1| - 3.5e-26 91.7 42.7 4.7e-26 91.2 29.6 1.1 1 0 0 1 1 1 1 Amino acid permease Acyl-CoA_dh_C PF12806.2 gi|294495794|ref|YP_003542287.1| - 0.056 13.3 0.1 0.056 13.3 0.1 1.0 1 0 0 1 1 1 0 Acetyl-CoA dehydrogenase C-terminal like B12-binding_2 PF02607.12 gi|294495795|ref|YP_003542288.1| - 4.2e-19 68.3 0.1 7.4e-19 67.5 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.14 gi|294495795|ref|YP_003542288.1| - 1.8e-18 66.5 0.4 2.9e-18 65.8 0.3 1.3 1 0 0 1 1 1 1 B12 binding domain MCH PF02289.11 gi|294495796|ref|YP_003542289.1| - 1.5e-155 516.9 0.7 1.7e-155 516.8 0.5 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) DUF2124 PF09897.4 gi|294495797|ref|YP_003542290.1| - 1.9e-47 160.6 0.0 2.1e-47 160.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) Met_10 PF02475.11 gi|294495798|ref|YP_003542291.1| - 2e-58 197.2 0.0 2.7e-58 196.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|294495798|ref|YP_003542291.1| - 0.00016 21.6 0.0 0.00044 20.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|294495798|ref|YP_003542291.1| - 0.00053 20.5 0.0 0.001 19.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|294495798|ref|YP_003542291.1| - 0.001 18.6 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.9 gi|294495798|ref|YP_003542291.1| - 0.0012 18.2 0.0 0.002 17.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain V4R PF02830.13 gi|294495799|ref|YP_003542292.1| - 7.2e-18 64.1 1.0 7.2e-18 64.1 0.7 1.8 2 0 0 2 2 2 1 V4R domain HTH_5 PF01022.15 gi|294495799|ref|YP_003542292.1| - 1.4e-10 40.6 0.0 2.2e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|294495799|ref|YP_003542292.1| - 4.9e-05 23.0 0.0 8.7e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|294495799|ref|YP_003542292.1| - 0.00012 21.6 0.0 0.00018 21.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|294495799|ref|YP_003542292.1| - 0.0014 18.1 0.0 0.0026 17.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|294495799|ref|YP_003542292.1| - 0.0017 18.2 0.0 0.0029 17.5 0.0 1.3 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_24 PF13412.1 gi|294495799|ref|YP_003542292.1| - 0.0023 17.2 0.0 0.0037 16.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|294495799|ref|YP_003542292.1| - 0.015 14.8 0.0 0.03 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|294495799|ref|YP_003542292.1| - 0.035 14.1 0.1 0.059 13.3 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|294495799|ref|YP_003542292.1| - 0.046 14.0 0.0 0.073 13.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|294495799|ref|YP_003542292.1| - 0.09 12.4 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 MarR family DUF2110 PF09883.4 gi|294495800|ref|YP_003542293.1| - 1.6e-75 253.6 0.4 1.8e-75 253.4 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) Phg_2220_C PF09524.5 gi|294495800|ref|YP_003542293.1| - 0.1 12.6 0.1 0.27 11.2 0.1 1.7 1 0 0 1 1 1 0 Conserved phage C-terminus (Phg_2220_C) HOOK PF05622.7 gi|294495801|ref|YP_003542294.1| - 0.00041 18.3 0.3 0.00052 17.9 0.2 1.1 1 0 0 1 1 1 1 HOOK protein HTH_27 PF13463.1 gi|294495801|ref|YP_003542294.1| - 0.00052 20.2 0.1 0.0014 18.9 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain EzrA PF06160.7 gi|294495801|ref|YP_003542294.1| - 0.0012 17.1 0.4 0.0018 16.5 0.3 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Tropomyosin_1 PF12718.2 gi|294495801|ref|YP_003542294.1| - 0.0049 16.7 0.4 0.0074 16.1 0.3 1.2 1 0 0 1 1 1 1 Tropomyosin like DUF2250 PF10007.4 gi|294495801|ref|YP_003542294.1| - 0.0059 16.4 0.2 0.017 15.0 0.0 1.7 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.1 gi|294495801|ref|YP_003542294.1| - 0.0064 16.2 2.2 0.0076 16.0 0.3 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix CHASE3 PF05227.8 gi|294495801|ref|YP_003542294.1| - 0.0071 16.0 0.3 0.011 15.4 0.2 1.3 1 0 0 1 1 1 1 CHASE3 domain MarR PF01047.17 gi|294495801|ref|YP_003542294.1| - 0.01 15.4 0.1 0.027 14.1 0.1 1.6 1 0 0 1 1 1 0 MarR family Sipho_Gp157 PF05565.6 gi|294495801|ref|YP_003542294.1| - 0.041 13.4 0.7 0.076 12.5 0.2 1.6 1 1 0 1 1 1 0 Siphovirus Gp157 TrmB PF01978.14 gi|294495801|ref|YP_003542294.1| - 0.057 13.1 1.1 5.9 6.6 0.0 3.0 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB DUF2705 PF10920.3 gi|294495801|ref|YP_003542294.1| - 0.09 11.9 0.1 0.13 11.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2705) DUF904 PF06005.7 gi|294495801|ref|YP_003542294.1| - 0.26 11.5 3.9 0.11 12.7 0.5 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF904) TRM PF02005.11 gi|294495802|ref|YP_003542295.1| - 1e-105 353.7 0.0 1.2e-105 353.5 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.10 gi|294495802|ref|YP_003542295.1| - 0.016 14.6 0.0 0.036 13.4 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical protein 95 zf-ribbon_3 PF13248.1 gi|294495802|ref|YP_003542295.1| - 0.051 12.8 0.1 0.051 12.8 0.1 2.5 3 0 0 3 3 3 0 zinc-ribbon domain TPR_5 PF12688.2 gi|294495802|ref|YP_003542295.1| - 0.069 13.1 0.1 0.14 12.2 0.1 1.4 1 0 0 1 1 1 0 Tetratrico peptide repeat Methyltransf_26 PF13659.1 gi|294495802|ref|YP_003542295.1| - 0.076 13.0 0.1 0.18 11.8 0.1 1.6 1 1 0 1 1 1 0 Methyltransferase domain HABP4_PAI-RBP1 PF04774.10 gi|294495803|ref|YP_003542296.1| - 0.0052 17.2 0.9 0.0074 16.7 0.7 1.2 1 0 0 1 1 1 1 Hyaluronan / mRNA binding family DUF2206 PF09971.4 gi|294495803|ref|YP_003542296.1| - 0.11 11.3 0.0 0.12 11.1 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) Cupin_2 PF07883.6 gi|294495804|ref|YP_003542297.1| - 5.3e-16 57.8 0.5 7.5e-16 57.3 0.4 1.2 1 0 0 1 1 1 1 Cupin domain HTH_3 PF01381.17 gi|294495804|ref|YP_003542297.1| - 4.8e-09 35.9 0.0 6.6e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|294495804|ref|YP_003542297.1| - 1.3e-08 34.9 0.0 1.9e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|294495804|ref|YP_003542297.1| - 2e-06 27.7 0.0 2.8e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.14 gi|294495804|ref|YP_003542297.1| - 2.4e-06 27.2 0.2 3.8e-06 26.6 0.1 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|294495804|ref|YP_003542297.1| - 3.6e-05 23.0 0.0 6.2e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) HTH_37 PF13744.1 gi|294495804|ref|YP_003542297.1| - 0.0017 18.1 0.0 0.0027 17.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|294495804|ref|YP_003542297.1| - 0.011 15.9 0.0 0.015 15.4 0.0 1.2 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain 4HBT_2 PF13279.1 gi|294495805|ref|YP_003542298.1| - 7.3e-11 42.5 0.0 8.6e-11 42.3 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|294495805|ref|YP_003542298.1| - 4.7e-07 29.8 0.0 7.3e-07 29.2 0.0 1.4 1 1 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|294495805|ref|YP_003542298.1| - 0.00029 19.8 0.0 0.037 12.9 0.0 2.1 2 0 0 2 2 2 2 Acyl-ACP thioesterase AMP-binding PF00501.23 gi|294495806|ref|YP_003542299.1| - 1.4e-105 353.0 0.1 1.7e-105 352.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|294495806|ref|YP_003542299.1| - 1.5e-14 54.6 0.0 3.7e-14 53.4 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF2249 PF10006.4 gi|294495806|ref|YP_003542299.1| - 0.15 11.6 0.0 0.64 9.6 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) Thioredoxin PF00085.15 gi|294495807|ref|YP_003542300.1| - 3.1e-11 42.8 0.0 4.9e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|294495807|ref|YP_003542300.1| - 0.016 15.3 0.0 0.05 13.8 0.0 1.7 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|294495807|ref|YP_003542300.1| - 0.12 12.5 0.0 0.19 11.8 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin-like Response_reg PF00072.19 gi|294495808|ref|YP_003542301.1| - 4.7e-23 81.3 0.1 5.3e-23 81.1 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain HisKA_2 PF07568.7 gi|294495809|ref|YP_003542302.1| - 6.8e-28 96.3 5.0 6.8e-28 96.3 3.5 2.5 3 0 0 3 3 3 1 Histidine kinase PAS_3 PF08447.6 gi|294495809|ref|YP_003542302.1| - 7.9e-14 51.5 0.0 1.8e-13 50.3 0.0 1.7 1 0 0 1 1 1 1 PAS fold Cache_1 PF02743.13 gi|294495809|ref|YP_003542302.1| - 5.1e-11 41.9 0.1 1.8e-10 40.2 0.1 1.9 1 0 0 1 1 1 1 Cache domain HATPase_c PF02518.21 gi|294495809|ref|YP_003542302.1| - 1.2e-07 31.4 0.0 3e-07 30.1 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|294495809|ref|YP_003542302.1| - 2.1e-05 24.8 0.1 5.2e-05 23.5 0.0 1.8 1 0 0 1 1 1 1 PAS domain HWE_HK PF07536.9 gi|294495809|ref|YP_003542302.1| - 0.00022 21.5 0.5 0.00059 20.2 0.3 1.7 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|294495809|ref|YP_003542302.1| - 0.00064 19.4 0.0 0.0012 18.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HAMP PF00672.20 gi|294495809|ref|YP_003542302.1| - 0.0017 18.4 0.0 0.0017 18.4 0.0 2.1 2 0 0 2 2 2 1 HAMP domain DUF3237 PF11578.3 gi|294495809|ref|YP_003542302.1| - 0.013 14.7 0.0 0.027 13.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3237) DUF1724 PF08350.5 gi|294495810|ref|YP_003542303.1| - 6.2e-15 54.4 0.0 1.7e-14 53.0 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|294495810|ref|YP_003542303.1| - 0.00017 21.2 0.2 0.00032 20.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|294495810|ref|YP_003542303.1| - 0.00017 21.8 0.1 0.00038 20.7 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|294495810|ref|YP_003542303.1| - 0.00053 19.6 0.1 0.0027 17.3 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|294495810|ref|YP_003542303.1| - 0.0034 17.0 0.3 0.015 14.9 0.0 2.2 3 0 0 3 3 3 1 MarR family HTH_45 PF14947.1 gi|294495810|ref|YP_003542303.1| - 0.0037 17.0 0.0 0.009 15.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.7 gi|294495810|ref|YP_003542303.1| - 0.02 14.5 0.2 0.081 12.5 0.1 2.1 2 0 0 2 2 2 0 HTH domain HemN_C PF06969.11 gi|294495810|ref|YP_003542303.1| - 0.021 14.8 0.0 0.042 13.8 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain RICTOR_M PF14666.1 gi|294495810|ref|YP_003542303.1| - 0.026 13.5 0.0 0.04 12.9 0.0 1.3 1 0 0 1 1 1 0 Rapamycin-insensitive companion of mTOR, middle domain HTH_34 PF13601.1 gi|294495810|ref|YP_003542303.1| - 0.053 13.5 0.0 0.27 11.2 0.0 2.2 3 0 0 3 3 3 0 Winged helix DNA-binding domain DIM1 PF02966.11 gi|294495810|ref|YP_003542303.1| - 0.065 12.7 0.2 0.29 10.6 0.1 2.0 1 1 1 2 2 2 0 Mitosis protein DIM1 PadR PF03551.9 gi|294495810|ref|YP_003542303.1| - 0.093 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Fe_dep_repress PF01325.14 gi|294495810|ref|YP_003542303.1| - 0.16 11.8 0.3 1.1 9.1 0.0 2.4 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain DUF1724 PF08350.5 gi|294495811|ref|YP_003542304.1| - 5.3e-22 77.1 0.0 1.8e-21 75.4 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_45 PF14947.1 gi|294495811|ref|YP_003542304.1| - 0.038 13.8 0.6 0.091 12.5 0.4 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix B12-binding_2 PF02607.12 gi|294495812|ref|YP_003542305.1| - 4.2e-19 68.3 0.1 7.4e-19 67.5 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.14 gi|294495812|ref|YP_003542305.1| - 1.8e-18 66.5 0.4 2.9e-18 65.8 0.3 1.3 1 0 0 1 1 1 1 B12 binding domain HTH_29 PF13551.1 gi|294495813|ref|YP_003542306.1| - 1.6e-13 50.7 0.0 2e-13 50.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|294495813|ref|YP_003542306.1| - 1.6e-07 32.0 0.1 2.7e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_23 PF13384.1 gi|294495813|ref|YP_003542306.1| - 2.4e-07 30.1 0.9 3.9e-07 29.5 0.1 1.8 2 1 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|294495813|ref|YP_003542306.1| - 4e-05 23.5 0.5 4e-05 23.5 0.3 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_33 PF13592.1 gi|294495813|ref|YP_003542306.1| - 0.0011 18.4 0.2 0.0038 16.7 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn helix LZ_Tnp_IS481 PF13011.1 gi|294495813|ref|YP_003542306.1| - 0.014 15.7 0.0 0.019 15.2 0.0 1.3 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 DUF89 PF01937.14 gi|294495814|ref|YP_003542307.1| - 3.9e-55 187.0 0.1 4.5e-55 186.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 DUF3760 PF12586.3 gi|294495814|ref|YP_003542307.1| - 0.037 13.8 0.0 0.19 11.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3760) DUF2099 PF09872.4 gi|294495814|ref|YP_003542307.1| - 0.054 12.5 0.1 0.092 11.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2099) RNA_bind_2 PF10133.4 gi|294495815|ref|YP_003542308.1| - 1.4e-17 63.4 1.6 1.5e-17 63.3 1.1 1.0 1 0 0 1 1 1 1 Predicted RNA-binding protein DUF2096 PF09869.4 gi|294495815|ref|YP_003542308.1| - 0.017 14.9 0.5 0.019 14.8 0.4 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2096) Gp_dh_C PF02800.15 gi|294495816|ref|YP_003542309.1| - 3.1e-26 91.7 0.0 4.9e-26 91.0 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|294495816|ref|YP_003542309.1| - 5.3e-22 78.3 0.1 1.3e-21 77.1 0.1 1.7 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|294495816|ref|YP_003542309.1| - 5.7e-11 42.4 0.6 1.2e-10 41.3 0.3 1.5 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|294495816|ref|YP_003542309.1| - 5.9e-05 23.3 0.0 0.00012 22.3 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|294495816|ref|YP_003542309.1| - 6.2e-05 23.3 0.2 0.0002 21.7 0.1 2.0 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|294495816|ref|YP_003542309.1| - 0.0011 18.1 0.2 0.027 13.6 0.1 2.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|294495816|ref|YP_003542309.1| - 0.0065 15.4 0.0 0.015 14.3 0.0 1.5 2 0 0 2 2 2 1 Saccharopine dehydrogenase GFO_IDH_MocA PF01408.17 gi|294495816|ref|YP_003542309.1| - 0.0067 16.9 0.0 0.017 15.6 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Inositol_P PF00459.20 gi|294495817|ref|YP_003542310.1| - 5.6e-37 127.5 0.0 6.6e-37 127.2 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|294495817|ref|YP_003542310.1| - 0.0018 17.1 0.0 0.0029 16.5 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase NAD_kinase PF01513.16 gi|294495818|ref|YP_003542311.1| - 1.8e-54 184.4 0.2 2.1e-54 184.2 0.2 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|294495818|ref|YP_003542311.1| - 0.081 12.3 0.0 0.27 10.6 0.0 1.8 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain HMGL-like PF00682.14 gi|294495819|ref|YP_003542312.1| - 2.3e-71 240.2 1.0 3.1e-71 239.8 0.7 1.2 1 0 0 1 1 1 1 HMGL-like DUF561 PF04481.7 gi|294495819|ref|YP_003542312.1| - 0.0014 17.6 0.3 0.68 8.8 0.0 3.0 3 0 0 3 3 3 2 Protein of unknown function (DUF561) adh_short PF00106.20 gi|294495819|ref|YP_003542312.1| - 0.054 13.4 0.5 0.13 12.1 0.1 1.7 2 0 0 2 2 2 0 short chain dehydrogenase NYN PF01936.13 gi|294495820|ref|YP_003542313.1| - 3.1e-24 85.9 0.0 4.1e-24 85.5 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF460 PF04312.8 gi|294495820|ref|YP_003542313.1| - 0.026 14.0 0.0 0.95 8.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF460) Rhomboid PF01694.17 gi|294495822|ref|YP_003542315.1| - 1.3e-31 109.5 17.4 1.3e-31 109.5 12.1 1.8 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.11 gi|294495822|ref|YP_003542315.1| - 2e-12 46.7 4.5 2.9e-12 46.2 3.1 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|294495822|ref|YP_003542315.1| - 6.7e-06 26.3 0.9 6.7e-06 26.3 0.7 2.4 2 1 1 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) zf-HIT PF04438.11 gi|294495822|ref|YP_003542315.1| - 0.021 14.4 5.5 0.033 13.8 3.8 1.3 1 0 0 1 1 1 0 HIT zinc finger FYVE PF01363.16 gi|294495822|ref|YP_003542315.1| - 0.042 13.7 1.1 0.075 12.9 0.8 1.4 1 0 0 1 1 1 0 FYVE zinc finger PyrI_C PF02748.10 gi|294495822|ref|YP_003542315.1| - 0.77 9.2 3.4 1.4 8.4 2.3 1.3 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-C2HC5 PF06221.8 gi|294495822|ref|YP_003542315.1| - 0.81 9.4 4.6 1.6 8.5 3.2 1.5 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Prismane PF03063.15 gi|294495823|ref|YP_003542316.1| - 9.7e-115 383.8 3.1 2.2e-96 323.2 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_10 PF13237.1 gi|294495823|ref|YP_003542316.1| - 3.1e-09 36.5 19.6 1.3e-06 28.1 7.6 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294495823|ref|YP_003542316.1| - 3.3e-07 30.4 8.0 3.3e-07 30.4 5.5 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|294495823|ref|YP_003542316.1| - 1.1e-06 27.9 11.0 1.7e-05 24.2 2.0 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294495823|ref|YP_003542316.1| - 1.3e-06 28.7 9.5 1.3e-06 28.7 6.6 2.8 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294495823|ref|YP_003542316.1| - 3.3e-06 27.4 8.0 0.0039 17.5 0.6 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294495823|ref|YP_003542316.1| - 5.4e-06 26.3 10.1 5.4e-06 26.3 7.0 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|294495823|ref|YP_003542316.1| - 0.00022 21.4 4.9 0.0095 16.2 0.5 3.8 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294495823|ref|YP_003542316.1| - 0.00026 20.7 9.5 0.00026 20.7 6.6 2.9 3 1 0 3 3 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294495823|ref|YP_003542316.1| - 0.00047 20.8 9.8 0.14 12.9 0.2 4.0 4 0 0 4 4 4 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|294495823|ref|YP_003542316.1| - 0.00052 19.7 11.2 0.00073 19.3 1.7 3.9 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294495823|ref|YP_003542316.1| - 0.0029 17.3 2.2 0.0029 17.3 1.5 3.4 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|294495823|ref|YP_003542316.1| - 0.013 15.8 2.5 0.013 15.8 1.8 4.0 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|294495823|ref|YP_003542316.1| - 2.5 8.7 12.7 0.39 11.3 0.2 3.7 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|294495823|ref|YP_003542316.1| - 9.5 6.6 12.2 4.4 7.7 2.6 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain CO_dh PF02552.11 gi|294495824|ref|YP_003542317.1| - 6.4e-33 113.6 0.0 7.8e-33 113.4 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.17 gi|294495824|ref|YP_003542317.1| - 1.8e-07 30.9 0.0 2.5e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CdhC PF03598.10 gi|294495825|ref|YP_003542318.1| - 1.6e-188 626.3 0.1 2e-188 626.0 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CENP-Q PF13094.1 gi|294495825|ref|YP_003542318.1| - 2.1 8.3 6.2 2.3 8.1 0.3 2.2 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit CbiA PF01656.18 gi|294495826|ref|YP_003542319.1| - 1e-33 116.3 0.3 1.3e-33 116.0 0.2 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|294495826|ref|YP_003542319.1| - 4.2e-13 49.1 1.0 1.2e-12 47.6 0.7 1.6 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|294495826|ref|YP_003542319.1| - 1.4e-08 34.2 1.5 1e-07 31.3 1.0 2.3 1 1 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|294495826|ref|YP_003542319.1| - 9.6e-07 28.8 0.0 0.023 14.6 0.0 2.4 2 1 1 3 3 3 2 AAA domain YhjQ PF06564.7 gi|294495826|ref|YP_003542319.1| - 3.3e-05 23.3 0.0 0.0001 21.7 0.0 1.8 1 1 0 1 1 1 1 YhjQ protein AAA_16 PF13191.1 gi|294495826|ref|YP_003542319.1| - 0.00027 20.9 0.1 0.0019 18.2 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain Toprim PF01751.17 gi|294495826|ref|YP_003542319.1| - 0.00037 20.4 0.2 0.62 10.0 0.0 2.5 2 1 0 2 2 2 2 Toprim domain AAA_17 PF13207.1 gi|294495826|ref|YP_003542319.1| - 0.00085 20.1 1.9 0.0046 17.7 1.0 2.4 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|294495826|ref|YP_003542319.1| - 0.0015 18.8 0.5 0.0062 16.8 0.4 2.0 1 1 0 1 1 1 1 ABC transporter AAA_26 PF13500.1 gi|294495826|ref|YP_003542319.1| - 0.0029 17.2 2.5 0.074 12.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|294495826|ref|YP_003542319.1| - 0.0056 16.3 0.1 0.017 14.8 0.0 1.9 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|294495826|ref|YP_003542319.1| - 0.0069 16.5 0.1 0.051 13.7 0.0 2.2 2 1 0 2 2 2 1 AAA domain Toprim_4 PF13662.1 gi|294495826|ref|YP_003542319.1| - 0.009 15.9 0.0 0.22 11.5 0.0 2.3 2 0 0 2 2 2 1 Toprim domain AAA_18 PF13238.1 gi|294495826|ref|YP_003542319.1| - 0.0091 16.2 1.8 0.0093 16.2 0.4 1.8 2 1 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|294495826|ref|YP_003542319.1| - 0.0096 14.8 0.8 0.039 12.8 0.6 1.9 2 1 0 2 2 2 1 Type II/IV secretion system protein APS_kinase PF01583.15 gi|294495826|ref|YP_003542319.1| - 0.012 15.2 0.3 0.025 14.2 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase PhoH PF02562.11 gi|294495826|ref|YP_003542319.1| - 0.015 14.5 0.0 0.028 13.6 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein DUF2075 PF09848.4 gi|294495826|ref|YP_003542319.1| - 0.021 13.8 0.1 0.031 13.2 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.10 gi|294495826|ref|YP_003542319.1| - 0.022 14.4 6.5 1.1 8.9 0.2 2.2 2 0 0 2 2 2 0 NTPase AAA_14 PF13173.1 gi|294495826|ref|YP_003542319.1| - 0.033 14.0 0.1 0.067 13.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|294495826|ref|YP_003542319.1| - 0.043 14.0 0.0 0.68 10.1 0.0 2.3 2 0 0 2 2 2 0 RNA helicase Usp PF00582.21 gi|294495826|ref|YP_003542319.1| - 0.048 13.8 0.1 0.93 9.6 0.1 2.5 2 1 0 2 2 2 0 Universal stress protein family CoA_binding_3 PF13727.1 gi|294495826|ref|YP_003542319.1| - 0.055 13.2 0.0 3.2 7.5 0.0 2.4 2 0 0 2 2 2 0 CoA-binding domain DUF87 PF01935.12 gi|294495826|ref|YP_003542319.1| - 0.071 12.9 3.5 0.11 12.2 0.3 2.4 2 1 0 2 2 2 0 Domain of unknown function DUF87 Fib_alpha PF08702.5 gi|294495826|ref|YP_003542319.1| - 0.087 12.9 0.2 0.28 11.2 0.0 1.8 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family CNTF PF01110.12 gi|294495826|ref|YP_003542319.1| - 0.13 11.5 0.1 7.2 5.8 0.0 2.4 2 1 0 2 2 2 0 Ciliary neurotrophic factor VWA_2 PF13519.1 gi|294495826|ref|YP_003542319.1| - 0.13 12.3 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 von Willebrand factor type A domain TrwB_AAD_bind PF10412.4 gi|294495826|ref|YP_003542319.1| - 0.17 10.4 0.9 0.37 9.3 0.5 1.6 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain PIF1 PF05970.9 gi|294495826|ref|YP_003542319.1| - 0.2 10.5 1.3 0.23 10.3 0.2 1.5 2 0 0 2 2 2 0 PIF1-like helicase AAA_25 PF13481.1 gi|294495826|ref|YP_003542319.1| - 0.23 10.8 1.9 1.8 7.9 0.1 2.6 2 1 1 3 3 3 0 AAA domain SRP54 PF00448.17 gi|294495826|ref|YP_003542319.1| - 0.7 9.2 5.2 2.5 7.4 0.4 2.5 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain CdhD PF03599.11 gi|294495827|ref|YP_003542320.1| - 5.4e-87 291.7 4.1 6.6e-80 268.4 0.2 3.1 1 1 2 3 3 3 3 CO dehydrogenase/acetyl-CoA synthase delta subunit His_biosynth PF00977.16 gi|294495827|ref|YP_003542320.1| - 0.027 13.7 0.1 0.047 12.9 0.0 1.5 1 1 0 1 1 1 0 Histidine biosynthesis protein GDPD PF03009.12 gi|294495827|ref|YP_003542320.1| - 0.039 13.4 0.1 0.059 12.8 0.0 1.3 1 0 0 1 1 1 0 Glycerophosphoryl diester phosphodiesterase family Pterin_bind PF00809.17 gi|294495827|ref|YP_003542320.1| - 0.08 12.3 0.4 1.2 8.5 0.2 2.3 1 1 1 2 2 2 0 Pterin binding enzyme CdhD PF03599.11 gi|294495828|ref|YP_003542321.1| - 1.1e-149 498.2 0.7 1.2e-149 497.9 0.5 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.8 gi|294495828|ref|YP_003542321.1| - 8.5e-16 57.2 0.6 1.8e-15 56.2 0.4 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster Pterin_bind PF00809.17 gi|294495828|ref|YP_003542321.1| - 0.0034 16.7 0.0 0.021 14.1 0.0 2.0 1 1 0 1 1 1 1 Pterin binding enzyme She2p PF11435.3 gi|294495828|ref|YP_003542321.1| - 0.1 11.9 0.1 0.18 11.1 0.1 1.3 1 0 0 1 1 1 0 RNA binding protein She2p DUF362 PF04015.7 gi|294495829|ref|YP_003542322.1| - 6.9e-26 90.9 0.1 1.3e-25 90.1 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|294495829|ref|YP_003542322.1| - 6.3e-14 50.8 23.3 3.2e-09 35.9 3.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294495829|ref|YP_003542322.1| - 3.2e-13 48.9 21.0 9.3e-09 34.7 3.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|294495829|ref|YP_003542322.1| - 3.4e-11 42.7 28.4 3.7e-07 29.8 12.7 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294495829|ref|YP_003542322.1| - 8.6e-11 41.1 16.6 3.9e-05 23.3 2.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294495829|ref|YP_003542322.1| - 1.9e-09 37.7 16.8 5.4e-09 36.2 11.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294495829|ref|YP_003542322.1| - 2.4e-08 34.1 17.7 5.6e-08 32.9 12.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294495829|ref|YP_003542322.1| - 2e-07 30.7 17.9 1.1e-06 28.3 12.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294495829|ref|YP_003542322.1| - 2.9e-07 31.1 6.4 0.0016 19.1 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|294495829|ref|YP_003542322.1| - 9.4e-07 29.0 5.7 0.0043 17.3 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294495829|ref|YP_003542322.1| - 1.3e-05 25.1 25.4 0.00083 19.3 1.2 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294495829|ref|YP_003542322.1| - 1.8e-05 24.6 14.1 0.0016 18.5 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|294495829|ref|YP_003542322.1| - 0.00017 21.8 26.3 0.012 16.1 4.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|294495829|ref|YP_003542322.1| - 0.00023 21.0 6.8 0.00043 20.1 4.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|294495829|ref|YP_003542322.1| - 0.00097 19.6 18.6 0.021 15.3 2.3 2.8 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|294495829|ref|YP_003542322.1| - 0.0075 16.6 19.3 0.099 13.0 3.7 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain DUF2088 PF09861.4 gi|294495829|ref|YP_003542322.1| - 0.054 12.5 0.6 0.092 11.7 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) Fer4_13 PF13370.1 gi|294495829|ref|YP_003542322.1| - 0.25 11.7 17.2 0.28 11.5 2.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Semialdhyde_dhC PF02774.13 gi|294495830|ref|YP_003542323.1| - 2.4e-45 154.6 0.0 3.1e-45 154.2 0.0 1.1 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|294495830|ref|YP_003542323.1| - 2.5e-32 111.7 0.0 5.6e-32 110.5 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|294495830|ref|YP_003542323.1| - 0.026 14.4 0.0 0.048 13.5 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.1 gi|294495830|ref|YP_003542323.1| - 0.049 13.6 0.0 0.078 12.9 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding NmrA PF05368.8 gi|294495830|ref|YP_003542323.1| - 0.054 12.7 0.0 0.088 12.0 0.0 1.4 1 0 0 1 1 1 0 NmrA-like family F420_oxidored PF03807.12 gi|294495830|ref|YP_003542323.1| - 0.063 13.7 0.1 0.2 12.1 0.0 1.9 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DXP_reductoisom PF02670.11 gi|294495830|ref|YP_003542323.1| - 0.085 13.3 0.0 0.47 10.9 0.0 2.0 1 1 1 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Ldh_1_N PF00056.18 gi|294495830|ref|YP_003542323.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain CobN-Mg_chel PF02514.11 gi|294495831|ref|YP_003542324.1| - 0 1138.6 6.7 0 1138.1 4.7 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase Lipoprotein_Ltp PF07553.6 gi|294495831|ref|YP_003542324.1| - 0.02 14.7 0.7 0.061 13.2 0.5 1.8 1 0 0 1 1 1 0 Host cell surface-exposed lipoprotein YueH PF14166.1 gi|294495831|ref|YP_003542324.1| - 0.026 14.2 0.2 0.069 12.9 0.1 1.7 1 0 0 1 1 1 0 YueH-like protein InvH PF04741.7 gi|294495831|ref|YP_003542324.1| - 4 7.2 6.0 1.2 8.9 0.2 2.8 3 0 0 3 3 3 0 InvH outer membrane lipoprotein CobN-Mg_chel PF02514.11 gi|294495832|ref|YP_003542325.1| - 0 1197.9 5.8 0 1197.7 4.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CarboxypepD_reg PF13620.1 gi|294495832|ref|YP_003542325.1| - 7e-14 51.6 9.5 0.0018 18.3 0.1 4.7 4 0 0 4 4 4 3 Carboxypeptidase regulatory-like domain fn3_3 PF14686.1 gi|294495832|ref|YP_003542325.1| - 1.1e-09 38.3 7.7 0.031 14.3 0.3 4.1 3 0 0 3 3 3 3 Polysaccharide lyase family 4, domain II Cna_B PF05738.8 gi|294495832|ref|YP_003542325.1| - 3.3e-08 33.1 11.5 0.054 13.2 0.0 4.2 4 0 0 4 4 4 3 Cna protein B-type domain DUF2012 PF09430.5 gi|294495832|ref|YP_003542325.1| - 0.00014 21.6 0.1 6.7 6.5 0.0 3.5 3 0 0 3 3 3 2 Protein of unknown function (DUF2012) DUF3479 PF11965.3 gi|294495832|ref|YP_003542325.1| - 0.12 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3479) CobN-Mg_chel PF02514.11 gi|294495833|ref|YP_003542326.1| - 0 1287.9 8.4 0 1280.5 5.1 2.2 2 0 0 2 2 2 2 CobN/Magnesium Chelatase DUF2149 PF09919.4 gi|294495834|ref|YP_003542327.1| - 3.5e-35 119.9 0.2 4.2e-35 119.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) MotA_ExbB PF01618.11 gi|294495835|ref|YP_003542328.1| - 5.4e-13 48.7 0.4 7.9e-13 48.2 0.3 1.3 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family VIT1 PF01988.14 gi|294495835|ref|YP_003542328.1| - 4.3e-05 23.0 1.3 6.7e-05 22.4 0.9 1.3 1 1 0 1 1 1 1 VIT family DUF3169 PF11368.3 gi|294495835|ref|YP_003542328.1| - 0.0029 16.8 3.2 0.031 13.4 0.1 2.4 2 1 0 2 2 2 2 Protein of unknown function (DUF3169) DUF2162 PF09930.4 gi|294495836|ref|YP_003542329.1| - 8.2e-63 211.5 22.7 9.3e-63 211.3 15.7 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) Herpes_UL45 PF05473.7 gi|294495836|ref|YP_003542329.1| - 0.77 9.1 2.7 1.6 8.0 1.9 1.7 1 0 0 1 1 1 0 UL45 protein NMD3 PF04981.8 gi|294495837|ref|YP_003542330.1| - 1.3e-60 204.4 2.8 1.8e-60 203.9 1.9 1.2 1 0 0 1 1 1 1 NMD3 family zf-NADH-PPase PF09297.6 gi|294495837|ref|YP_003542330.1| - 0.13 11.7 6.4 1.1 8.8 0.1 3.1 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|294495837|ref|YP_003542330.1| - 0.43 9.8 10.2 0.14 11.3 1.7 2.8 3 0 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|294495837|ref|YP_003542330.1| - 0.51 9.6 10.7 0.27 10.5 2.7 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|294495837|ref|YP_003542330.1| - 0.67 9.6 7.4 1.7 8.3 0.0 3.0 2 1 1 3 3 3 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.1 gi|294495837|ref|YP_003542330.1| - 0.98 9.1 9.9 1.6 8.4 0.1 3.9 4 0 0 4 4 4 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.2 gi|294495837|ref|YP_003542330.1| - 1.7 8.5 8.2 2.8 7.8 1.0 3.1 3 0 0 3 3 3 0 Transposase zinc-ribbon domain DUF2296 PF10058.4 gi|294495837|ref|YP_003542330.1| - 1.9 8.2 6.9 3 7.6 0.7 2.7 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) DZR PF12773.2 gi|294495837|ref|YP_003542330.1| - 2.1 8.2 14.4 3.8 7.3 5.9 3.2 2 2 1 3 3 3 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|294495837|ref|YP_003542330.1| - 4.4 6.9 7.9 47 3.6 3.6 2.7 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|294495837|ref|YP_003542330.1| - 6.7 6.7 11.2 2.1 8.3 0.4 3.3 4 0 0 4 4 3 0 Zinc ribbon domain ATP-grasp_3 PF02655.9 gi|294495838|ref|YP_003542331.1| - 4.9e-40 137.0 0.0 6.9e-40 136.5 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|294495838|ref|YP_003542331.1| - 1.4e-21 77.0 0.0 2.1e-21 76.5 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|294495838|ref|YP_003542331.1| - 9.6e-17 60.7 0.0 2.2e-16 59.5 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|294495838|ref|YP_003542331.1| - 3.1e-10 39.6 0.0 5.3e-09 35.6 0.0 2.2 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.1 gi|294495838|ref|YP_003542331.1| - 5.8e-07 28.8 0.1 1.6e-05 24.1 0.0 2.4 2 1 1 3 3 3 1 Sugar-transfer associated ATP-grasp RimK PF08443.6 gi|294495838|ref|YP_003542331.1| - 6.3e-06 25.7 0.0 1.2e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|294495838|ref|YP_003542331.1| - 5.2e-05 22.7 0.0 0.00052 19.4 0.0 2.2 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus GARS_A PF01071.14 gi|294495838|ref|YP_003542331.1| - 0.0004 19.9 0.3 0.49 9.9 0.0 3.2 2 1 0 3 3 3 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TFIIE_alpha PF02002.12 gi|294495839|ref|YP_003542332.1| - 4.6e-17 61.4 0.7 7.8e-17 60.7 0.5 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit DUF1610 PF07754.6 gi|294495839|ref|YP_003542332.1| - 0.29 11.2 3.9 0.63 10.2 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Rad50_zn_hook PF04423.9 gi|294495839|ref|YP_003542332.1| - 0.44 10.0 3.7 0.6 9.6 0.2 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif HD PF01966.17 gi|294495840|ref|YP_003542333.1| - 1.5e-14 54.0 0.5 2.2e-14 53.5 0.3 1.3 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|294495840|ref|YP_003542333.1| - 4.1e-05 22.9 0.0 0.0001 21.6 0.0 1.6 1 1 0 1 1 1 1 HDOD domain IF2_N PF04760.10 gi|294495840|ref|YP_003542333.1| - 0.00031 20.3 0.1 0.17 11.5 0.0 4.1 4 1 0 4 4 4 1 Translation initiation factor IF-2, N-terminal region HTH_12 PF08461.5 gi|294495840|ref|YP_003542333.1| - 0.051 13.3 0.3 0.24 11.1 0.2 2.2 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain PHP PF02811.14 gi|294495841|ref|YP_003542334.1| - 1.5e-17 63.8 0.0 4.3e-17 62.4 0.0 1.7 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|294495841|ref|YP_003542334.1| - 0.25 10.8 1.5 0.54 9.7 0.1 2.2 3 0 0 3 3 3 0 PHP-associated UPF0014 PF03649.8 gi|294495843|ref|YP_003542336.1| - 9.8e-44 149.3 16.9 1.2e-43 149.1 11.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) ABC_tran PF00005.22 gi|294495844|ref|YP_003542337.1| - 6.6e-29 100.9 0.0 8.1e-29 100.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|294495844|ref|YP_003542337.1| - 1.4e-09 38.3 3.3 1.4e-07 31.7 2.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|294495844|ref|YP_003542337.1| - 0.0001 21.7 0.0 0.00019 20.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|294495844|ref|YP_003542337.1| - 0.00017 20.9 0.1 0.00074 18.8 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|294495844|ref|YP_003542337.1| - 0.0038 17.1 0.6 0.13 12.1 0.1 2.5 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|294495844|ref|YP_003542337.1| - 0.012 15.6 0.0 0.016 15.2 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|294495844|ref|YP_003542337.1| - 0.016 14.7 0.0 0.23 11.0 0.0 2.0 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|294495844|ref|YP_003542337.1| - 0.019 14.1 0.0 0.024 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 T2SE PF00437.15 gi|294495844|ref|YP_003542337.1| - 0.038 12.9 0.0 0.057 12.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein GvpD PF07088.6 gi|294495844|ref|YP_003542337.1| - 0.041 12.2 0.0 0.046 12.0 0.0 1.1 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_25 PF13481.1 gi|294495844|ref|YP_003542337.1| - 0.041 13.2 0.0 0.062 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|294495844|ref|YP_003542337.1| - 0.046 12.8 0.0 0.061 12.4 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.1 gi|294495844|ref|YP_003542337.1| - 0.046 12.7 0.2 4.6 6.1 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.1 gi|294495844|ref|YP_003542337.1| - 0.054 13.8 0.8 0.092 13.0 0.6 1.5 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|294495844|ref|YP_003542337.1| - 0.082 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_18 PF13238.1 gi|294495844|ref|YP_003542337.1| - 0.2 11.9 1.0 4.9 7.4 0.7 2.3 1 1 0 1 1 1 0 AAA domain SfsA PF03749.8 gi|294495845|ref|YP_003542338.1| - 2.5e-60 203.6 0.0 3.1e-60 203.3 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein DUF4263 PF14082.1 gi|294495845|ref|YP_003542338.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4263) DUF1282 PF06930.7 gi|294495846|ref|YP_003542339.1| - 1.9 8.0 12.4 1.2 8.7 3.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1282) Metallophos PF00149.23 gi|294495847|ref|YP_003542340.1| - 4.1e-32 111.2 0.0 5.6e-32 110.7 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|294495847|ref|YP_003542340.1| - 7.4e-07 29.1 0.0 1.1e-06 28.5 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF367 PF04034.8 gi|294495848|ref|YP_003542341.1| - 4.9e-46 155.4 0.0 6e-46 155.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|294495848|ref|YP_003542341.1| - 1.9e-13 49.7 1.0 3e-13 49.0 0.7 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Lysine_decarbox PF03641.9 gi|294495849|ref|YP_003542342.1| - 4.9e-09 36.1 0.0 6.6e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|294495849|ref|YP_003542342.1| - 1.1e-08 34.3 1.1 2.3e-07 29.9 0.6 2.0 1 1 1 2 2 2 2 DNA recombination-mediator protein A Aminoglyc_resit PF10706.4 gi|294495849|ref|YP_003542342.1| - 0.05 13.2 0.0 0.071 12.7 0.0 1.2 1 0 0 1 1 1 0 Aminoglycoside-2''-adenylyltransferase Topoisom_bac PF01131.15 gi|294495850|ref|YP_003542343.1| - 9.3e-119 396.8 0.1 1.6e-118 396.0 0.1 1.4 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|294495850|ref|YP_003542343.1| - 2.7e-16 59.3 2.2 3.7e-16 58.9 0.2 2.3 3 0 0 3 3 3 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|294495850|ref|YP_003542343.1| - 1.6e-13 49.9 2.8 1.6e-13 49.9 2.0 2.0 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.1 gi|294495850|ref|YP_003542343.1| - 8.6e-08 32.2 0.3 6.6e-07 29.4 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|294495850|ref|YP_003542343.1| - 3.6e-05 23.5 0.1 0.0001 22.1 0.1 1.8 1 0 0 1 1 1 1 IMS family HHH motif Cdd1 PF11731.3 gi|294495850|ref|YP_003542343.1| - 0.0003 20.6 0.1 0.00092 19.0 0.0 1.8 2 0 0 2 2 2 1 Pathogenicity locus TfoX_C PF04994.8 gi|294495850|ref|YP_003542343.1| - 0.00055 19.7 0.0 0.0012 18.6 0.0 1.6 1 0 0 1 1 1 1 TfoX C-terminal domain DUF4332 PF14229.1 gi|294495850|ref|YP_003542343.1| - 0.009 15.9 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) Tex_N PF09371.5 gi|294495850|ref|YP_003542343.1| - 0.029 13.6 0.0 0.06 12.6 0.0 1.4 1 0 0 1 1 1 0 Tex-like protein N-terminal domain DUF2283 PF10049.4 gi|294495850|ref|YP_003542343.1| - 0.044 13.6 0.0 0.63 9.9 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2283) DNA_pol_lambd_f PF10391.4 gi|294495850|ref|YP_003542343.1| - 0.074 12.6 0.0 0.19 11.2 0.0 1.7 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Ogr_Delta PF04606.7 gi|294495850|ref|YP_003542343.1| - 0.5 10.0 1.4 1.2 8.8 0.9 1.7 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger Beta-Casp PF10996.3 gi|294495851|ref|YP_003542344.1| - 1.8e-20 73.1 0.0 3.9e-20 72.0 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_2 PF12706.2 gi|294495851|ref|YP_003542344.1| - 6.2e-11 42.1 0.1 1.1e-10 41.4 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|294495851|ref|YP_003542344.1| - 1.1e-09 38.2 1.8 1.5e-08 34.4 1.1 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|294495851|ref|YP_003542344.1| - 1.6e-07 30.9 0.1 1.6e-06 27.8 0.0 2.3 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|294495851|ref|YP_003542344.1| - 0.0066 16.1 0.0 0.018 14.7 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain NTP_transf_3 PF12804.2 gi|294495852|ref|YP_003542345.1| - 3.5e-31 108.4 0.0 4.5e-31 108.0 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|294495852|ref|YP_003542345.1| - 0.0026 17.3 0.0 0.0038 16.7 0.0 1.1 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF2148 PF09918.4 gi|294495853|ref|YP_003542346.1| - 8.6e-36 121.4 1.0 1.4e-35 120.7 0.3 1.7 2 0 0 2 2 2 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.8 gi|294495853|ref|YP_003542346.1| - 0.00085 18.8 1.1 0.0017 17.8 0.8 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster zf-UDP PF14569.1 gi|294495853|ref|YP_003542346.1| - 0.026 14.2 0.2 0.043 13.5 0.1 1.3 1 0 0 1 1 1 0 Zinc-binding RING-finger DUF460 PF04312.8 gi|294495854|ref|YP_003542347.1| - 6e-47 158.6 0.1 1.7e-46 157.1 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF460) TMF_TATA_bd PF12325.3 gi|294495854|ref|YP_003542347.1| - 0.0017 18.0 14.6 0.015 15.0 5.3 3.0 1 1 1 2 2 2 1 TATA element modulatory factor 1 TATA binding HI0933_like PF03486.9 gi|294495854|ref|YP_003542347.1| - 0.0065 14.9 0.9 0.01 14.3 0.6 1.2 1 0 0 1 1 1 1 HI0933-like protein Snapin_Pallidin PF14712.1 gi|294495854|ref|YP_003542347.1| - 0.12 12.7 14.7 0.093 13.0 8.3 2.2 2 0 0 2 2 2 0 Snapin/Pallidin Acylphosphatase PF00708.13 gi|294495854|ref|YP_003542347.1| - 0.14 12.2 4.1 3.2 7.9 0.0 3.6 4 1 1 5 5 5 0 Acylphosphatase GLE1 PF07817.8 gi|294495854|ref|YP_003542347.1| - 0.25 10.2 3.1 0.59 9.0 2.1 1.6 1 0 0 1 1 1 0 GLE1-like protein DUF4164 PF13747.1 gi|294495854|ref|YP_003542347.1| - 0.3 11.2 11.2 0.66 10.1 6.0 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) Reo_sigmaC PF04582.7 gi|294495854|ref|YP_003542347.1| - 0.42 9.7 1.6 0.69 9.0 1.1 1.3 1 0 0 1 1 1 0 Reovirus sigma C capsid protein APG6 PF04111.7 gi|294495854|ref|YP_003542347.1| - 0.7 8.8 17.3 1.3 7.9 11.7 1.6 1 1 0 1 1 1 0 Autophagy protein Apg6 DUF724 PF05266.9 gi|294495854|ref|YP_003542347.1| - 2.7 7.5 16.9 0.16 11.5 7.7 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF724) DUF1664 PF07889.7 gi|294495854|ref|YP_003542347.1| - 2.9 7.7 11.2 1.1 9.0 2.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Spc7 PF08317.6 gi|294495854|ref|YP_003542347.1| - 5.3 5.6 21.1 5 5.6 12.1 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein RIO1 PF01163.17 gi|294495855|ref|YP_003542348.1| - 4.4e-42 143.5 0.1 5.9e-42 143.1 0.1 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|294495855|ref|YP_003542348.1| - 1e-27 95.9 0.0 1.8e-27 95.1 0.0 1.4 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|294495855|ref|YP_003542348.1| - 0.00049 19.9 0.2 0.0019 18.0 0.0 1.8 2 0 0 2 2 2 1 Phosphotransferase enzyme family HTH_27 PF13463.1 gi|294495855|ref|YP_003542348.1| - 0.00053 20.2 0.0 0.0011 19.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain Pkinase PF00069.20 gi|294495855|ref|YP_003542348.1| - 0.0038 16.4 0.0 0.0059 15.7 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain MarR_2 PF12802.2 gi|294495855|ref|YP_003542348.1| - 0.0096 15.5 0.0 0.024 14.3 0.0 1.7 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|294495855|ref|YP_003542348.1| - 0.051 13.4 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Tbf5 PF06331.7 gi|294495855|ref|YP_003542348.1| - 0.073 12.8 0.4 0.25 11.1 0.1 2.0 2 0 0 2 2 2 0 Transcription factor TFIIH complex subunit Tfb5 Kdo PF06293.9 gi|294495855|ref|YP_003542348.1| - 0.082 11.9 0.3 3.5 6.6 0.1 2.2 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family DUF2111 PF09884.4 gi|294495856|ref|YP_003542349.1| - 7.2e-32 109.0 1.4 9.8e-32 108.6 1.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) Cache_3 PF14827.1 gi|294495856|ref|YP_003542349.1| - 0.067 13.1 0.3 0.089 12.6 0.2 1.4 1 1 0 1 1 1 0 Sensory domain of two-component sensor kinase Pyr_redox_2 PF07992.9 gi|294495857|ref|YP_003542350.1| - 2.5e-34 118.9 0.3 3e-34 118.6 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|294495857|ref|YP_003542350.1| - 1.6e-17 64.2 0.1 2.2e-12 47.4 0.0 2.5 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|294495857|ref|YP_003542350.1| - 2.7e-15 56.5 3.4 2.1e-12 47.2 0.1 3.4 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|294495857|ref|YP_003542350.1| - 1.2e-09 37.1 1.0 0.00022 19.8 0.0 3.1 3 0 0 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.2 gi|294495857|ref|YP_003542350.1| - 2.4e-09 36.8 0.0 7.9e-09 35.0 0.0 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.19 gi|294495857|ref|YP_003542350.1| - 2.8e-08 33.0 0.7 0.00013 20.9 0.1 2.7 3 0 0 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|294495857|ref|YP_003542350.1| - 5.1e-07 28.8 2.4 4.8e-05 22.3 0.2 3.4 3 1 1 4 4 4 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|294495857|ref|YP_003542350.1| - 1.1e-05 24.5 1.1 0.00037 19.4 0.1 3.1 4 0 0 4 4 4 1 FAD binding domain FAD_binding_3 PF01494.14 gi|294495857|ref|YP_003542350.1| - 6.8e-05 22.0 0.0 0.0003 19.9 0.0 1.9 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|294495857|ref|YP_003542350.1| - 7.7e-05 22.6 0.2 0.00025 21.0 0.0 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|294495857|ref|YP_003542350.1| - 0.00034 19.6 0.1 0.011 14.6 0.0 2.3 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.12 gi|294495857|ref|YP_003542350.1| - 0.00076 18.6 0.8 0.027 13.5 0.1 2.5 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.7 gi|294495857|ref|YP_003542350.1| - 0.0012 17.7 0.8 0.78 8.5 0.2 2.7 2 1 1 3 3 3 2 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|294495857|ref|YP_003542350.1| - 0.0013 18.9 0.1 0.11 12.8 0.0 2.5 2 1 0 2 2 2 1 Putative NAD(P)-binding Trp_halogenase PF04820.9 gi|294495857|ref|YP_003542350.1| - 0.064 11.8 0.8 2.4 6.6 0.1 2.9 3 0 0 3 3 3 0 Tryptophan halogenase Thioredoxin_3 PF13192.1 gi|294495858|ref|YP_003542351.1| - 3.3e-16 58.8 0.1 3.6e-16 58.7 0.1 1.0 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin PF00085.15 gi|294495858|ref|YP_003542351.1| - 2.2e-07 30.4 0.1 2.2e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.19 gi|294495858|ref|YP_003542351.1| - 4.5e-07 29.7 0.0 6e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_8 PF13905.1 gi|294495858|ref|YP_003542351.1| - 9e-05 22.5 0.1 0.11 12.5 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like DUF836 PF05768.9 gi|294495858|ref|YP_003542351.1| - 0.00021 21.4 0.0 0.00022 21.4 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.1 gi|294495858|ref|YP_003542351.1| - 0.012 15.8 0.2 0.032 14.4 0.1 1.7 1 1 0 1 1 1 0 Thioredoxin-like domain DSBA PF01323.15 gi|294495858|ref|YP_003542351.1| - 0.017 14.7 0.0 0.017 14.6 0.0 1.1 1 0 0 1 1 1 0 DSBA-like thioredoxin domain TraF PF13728.1 gi|294495858|ref|YP_003542351.1| - 0.055 12.9 0.0 0.072 12.5 0.0 1.1 1 0 0 1 1 1 0 F plasmid transfer operon protein Thioredoxin_7 PF13899.1 gi|294495858|ref|YP_003542351.1| - 0.059 13.4 0.1 0.098 12.6 0.1 1.4 1 1 0 1 1 1 0 Thioredoxin-like Thioredoxin_4 PF13462.1 gi|294495858|ref|YP_003542351.1| - 0.085 12.8 0.3 0.13 12.2 0.2 1.4 1 1 1 2 2 2 0 Thioredoxin Cap_synth_GfcB PF11102.3 gi|294495858|ref|YP_003542351.1| - 0.093 12.2 0.0 0.1 12.1 0.0 1.0 1 0 0 1 1 1 0 Group 4 capsule polysaccharide formation lipoprotein gfcB IGPS PF00218.16 gi|294495859|ref|YP_003542352.1| - 2.4e-61 206.9 0.1 3.2e-61 206.6 0.1 1.1 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase PcrB PF01884.12 gi|294495859|ref|YP_003542352.1| - 1.5e-05 24.3 0.2 3.6e-05 23.1 0.1 1.6 2 0 0 2 2 2 1 PcrB family DHO_dh PF01180.16 gi|294495859|ref|YP_003542352.1| - 0.00066 18.7 0.2 0.0021 17.0 0.1 2.0 2 1 0 2 2 2 1 Dihydroorotate dehydrogenase His_biosynth PF00977.16 gi|294495859|ref|YP_003542352.1| - 0.083 12.1 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein PALP PF00291.20 gi|294495860|ref|YP_003542353.1| - 1e-36 126.7 0.6 1.4e-36 126.2 0.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Phage_min_cap2 PF06152.6 gi|294495860|ref|YP_003542353.1| - 0.12 11.3 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 Phage minor capsid protein 2 Trp_syntA PF00290.15 gi|294495861|ref|YP_003542354.1| - 3.6e-94 314.0 0.1 4.4e-94 313.8 0.1 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|294495861|ref|YP_003542354.1| - 7.1e-05 22.1 0.2 0.00015 21.0 0.1 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|294495861|ref|YP_003542354.1| - 0.0001 21.6 3.5 0.0015 17.7 0.4 2.8 2 1 1 3 3 3 1 PcrB family PucR PF07905.6 gi|294495861|ref|YP_003542354.1| - 0.00071 19.1 0.1 0.007 15.9 0.0 2.4 2 0 0 2 2 2 1 Purine catabolism regulatory protein-like family IMPDH PF00478.20 gi|294495861|ref|YP_003542354.1| - 0.0073 15.2 0.3 1 8.1 0.1 2.2 2 1 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain IGPS PF00218.16 gi|294495861|ref|YP_003542354.1| - 0.01 14.9 0.1 0.022 13.8 0.0 1.5 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase DHO_dh PF01180.16 gi|294495861|ref|YP_003542354.1| - 0.016 14.1 0.2 0.024 13.6 0.1 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase SRP54 PF00448.17 gi|294495862|ref|YP_003542355.1| - 3.1e-72 242.1 0.2 4.8e-72 241.5 0.2 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|294495862|ref|YP_003542355.1| - 4.3e-13 49.1 8.8 1.2e-12 47.7 1.9 2.9 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.7 gi|294495862|ref|YP_003542355.1| - 5.3e-05 22.3 0.0 8.6e-05 21.7 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.1 gi|294495862|ref|YP_003542355.1| - 0.00014 21.5 0.4 0.00025 20.6 0.3 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|294495862|ref|YP_003542355.1| - 0.00046 19.8 0.1 0.0012 18.5 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Thymidylate_kin PF02223.12 gi|294495862|ref|YP_003542355.1| - 0.00056 19.3 0.1 0.02 14.2 0.0 2.6 3 0 0 3 3 3 1 Thymidylate kinase AAA_22 PF13401.1 gi|294495862|ref|YP_003542355.1| - 0.0011 19.1 0.1 0.0037 17.3 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|294495862|ref|YP_003542355.1| - 0.0011 19.1 0.1 0.0054 16.9 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|294495862|ref|YP_003542355.1| - 0.0016 18.1 1.3 0.0045 16.7 0.3 2.1 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|294495862|ref|YP_003542355.1| - 0.0019 18.1 0.3 0.013 15.5 0.2 2.2 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|294495862|ref|YP_003542355.1| - 0.0026 18.0 0.1 0.015 15.6 0.0 2.1 2 0 0 2 2 2 1 ABC transporter cobW PF02492.14 gi|294495862|ref|YP_003542355.1| - 0.004 16.6 0.3 0.007 15.8 0.2 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.15 gi|294495862|ref|YP_003542355.1| - 0.0068 16.0 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase T2SE PF00437.15 gi|294495862|ref|YP_003542355.1| - 0.0078 15.1 0.8 0.011 14.6 0.1 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_33 PF13671.1 gi|294495862|ref|YP_003542355.1| - 0.02 14.7 0.1 0.037 13.8 0.1 1.5 1 1 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|294495862|ref|YP_003542355.1| - 0.022 14.6 0.8 0.029 14.1 0.0 1.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_16 PF13191.1 gi|294495862|ref|YP_003542355.1| - 0.026 14.5 0.1 0.067 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain DUF2075 PF09848.4 gi|294495862|ref|YP_003542355.1| - 0.069 12.1 0.1 0.12 11.3 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Prefoldin PF02996.12 gi|294495863|ref|YP_003542356.1| - 4.5e-29 100.5 5.8 4.5e-29 100.5 4.0 1.4 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|294495863|ref|YP_003542356.1| - 1.6e-09 37.4 14.2 7.4e-06 25.6 3.3 2.1 2 0 0 2 2 2 2 Prefoldin subunit DUF342 PF03961.8 gi|294495863|ref|YP_003542356.1| - 0.0035 15.8 3.3 0.0035 15.8 2.3 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF342) FliD_N PF02465.13 gi|294495863|ref|YP_003542356.1| - 0.0078 16.5 5.5 0.02 15.2 0.0 2.3 1 1 1 2 2 2 1 Flagellar hook-associated protein 2 N-terminus PspB PF06667.7 gi|294495863|ref|YP_003542356.1| - 0.0086 15.9 8.2 0.035 14.0 0.9 2.5 2 1 1 3 3 2 1 Phage shock protein B Syntaxin-6_N PF09177.6 gi|294495863|ref|YP_003542356.1| - 0.018 15.4 5.6 0.4 11.1 0.4 2.2 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Uds1 PF15456.1 gi|294495863|ref|YP_003542356.1| - 0.024 14.6 2.3 0.066 13.2 1.6 1.7 1 1 0 1 1 1 0 Up-regulated During Septation Fib_alpha PF08702.5 gi|294495863|ref|YP_003542356.1| - 0.028 14.5 14.4 0.037 14.1 3.4 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family NEP PF10167.4 gi|294495863|ref|YP_003542356.1| - 0.029 14.0 4.0 2.3 7.9 0.6 2.1 2 0 0 2 2 2 0 Uncharacterised conserved protein Syntaxin PF00804.20 gi|294495863|ref|YP_003542356.1| - 0.047 13.8 16.7 0.64 10.2 11.6 2.0 1 1 0 1 1 1 0 Syntaxin TBPIP PF07106.8 gi|294495863|ref|YP_003542356.1| - 0.055 13.0 9.2 0.066 12.7 1.3 2.1 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF2363 PF10155.4 gi|294495863|ref|YP_003542356.1| - 0.062 13.2 1.5 3.6 7.5 0.7 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2363) SEO_N PF14576.1 gi|294495863|ref|YP_003542356.1| - 0.076 12.2 4.4 0.24 10.6 0.3 2.0 2 0 0 2 2 2 0 Sieve element occlusion N-terminus DUF16 PF01519.11 gi|294495863|ref|YP_003542356.1| - 0.086 13.0 7.2 0.11 12.7 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function DUF16 Laminin_II PF06009.7 gi|294495863|ref|YP_003542356.1| - 0.087 12.5 11.3 0.53 10.0 2.4 2.2 2 0 0 2 2 2 0 Laminin Domain II Vps5 PF09325.5 gi|294495863|ref|YP_003542356.1| - 0.12 11.6 8.9 0.4 9.8 0.3 2.0 2 0 0 2 2 2 0 Vps5 C terminal like DUF972 PF06156.8 gi|294495863|ref|YP_003542356.1| - 0.13 12.6 7.2 3.8 7.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF972) DUF2959 PF11172.3 gi|294495863|ref|YP_003542356.1| - 0.14 11.9 4.1 0.13 12.0 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2959) DUF607 PF04678.8 gi|294495863|ref|YP_003542356.1| - 0.14 12.0 3.7 0.17 11.7 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF607 Rootletin PF15035.1 gi|294495863|ref|YP_003542356.1| - 0.23 11.4 11.4 0.55 10.1 1.7 2.1 2 0 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion RasGAP_C PF03836.10 gi|294495863|ref|YP_003542356.1| - 0.23 11.1 7.7 4 7.1 0.1 2.1 2 0 0 2 2 2 0 RasGAP C-terminus COG2 PF06148.6 gi|294495863|ref|YP_003542356.1| - 0.23 11.3 7.1 1.2 9.0 1.0 2.1 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF725 PF05267.7 gi|294495863|ref|YP_003542356.1| - 0.25 11.2 2.9 0.99 9.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF725) Allexi_40kDa PF05549.6 gi|294495863|ref|YP_003542356.1| - 0.26 10.5 5.4 0.41 9.8 1.2 2.0 2 0 0 2 2 2 0 Allexivirus 40kDa protein Fzo_mitofusin PF04799.8 gi|294495863|ref|YP_003542356.1| - 0.33 10.3 11.3 0.49 9.7 1.7 2.1 2 0 0 2 2 2 0 fzo-like conserved region Spc24 PF08286.6 gi|294495863|ref|YP_003542356.1| - 0.34 10.6 15.0 1.1 8.9 0.8 2.2 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 DUF4200 PF13863.1 gi|294495863|ref|YP_003542356.1| - 0.37 10.7 14.6 0.37 10.7 3.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) DUF948 PF06103.6 gi|294495863|ref|YP_003542356.1| - 0.39 10.6 8.9 0.84 9.5 1.8 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Cortex-I_coil PF09304.5 gi|294495863|ref|YP_003542356.1| - 0.42 10.6 10.6 0.57 10.2 1.4 2.2 2 0 0 2 2 2 0 Cortexillin I, coiled coil zf-C4H2 PF10146.4 gi|294495863|ref|YP_003542356.1| - 0.43 10.5 6.6 0.095 12.7 1.5 1.8 2 0 0 2 2 2 0 Zinc finger-containing protein IncA PF04156.9 gi|294495863|ref|YP_003542356.1| - 0.53 9.8 14.0 1.3 8.6 3.0 2.1 2 0 0 2 2 2 0 IncA protein WXG100 PF06013.7 gi|294495863|ref|YP_003542356.1| - 0.55 10.2 9.6 1.3 9.0 0.8 2.4 2 0 0 2 2 2 0 Proteins of 100 residues with WXG CALCOCO1 PF07888.6 gi|294495863|ref|YP_003542356.1| - 0.55 8.4 9.5 1.2 7.3 6.6 1.5 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like NPV_P10 PF05531.7 gi|294495863|ref|YP_003542356.1| - 0.64 10.2 10.5 0.58 10.4 2.0 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Tropomyosin_1 PF12718.2 gi|294495863|ref|YP_003542356.1| - 0.65 9.8 11.3 1 9.1 2.2 2.1 2 0 0 2 2 2 0 Tropomyosin like CENP-F_leu_zip PF10473.4 gi|294495863|ref|YP_003542356.1| - 0.65 9.8 12.5 1.8 8.4 2.9 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 OmpH PF03938.9 gi|294495863|ref|YP_003542356.1| - 0.82 9.6 14.6 1 9.2 2.0 2.2 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) BLOC1_2 PF10046.4 gi|294495863|ref|YP_003542356.1| - 1 9.5 10.9 0.55 10.3 2.1 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFT46_B_C PF12317.3 gi|294495863|ref|YP_003542356.1| - 1.1 8.5 4.5 0.64 9.3 0.7 1.9 2 0 0 2 2 2 0 Intraflagellar transport complex B protein 46 C terminal Synaptobrevin PF00957.16 gi|294495863|ref|YP_003542356.1| - 1.2 8.8 12.1 1.1 8.8 4.2 2.2 2 0 0 2 2 2 0 Synaptobrevin SMC_Nse1 PF07574.8 gi|294495863|ref|YP_003542356.1| - 1.2 8.7 7.5 0.35 10.4 1.4 2.0 1 1 0 2 2 2 0 Nse1 non-SMC component of SMC5-6 complex DUF2937 PF11157.3 gi|294495863|ref|YP_003542356.1| - 1.3 8.3 5.8 1.9 7.7 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) Med4 PF10018.4 gi|294495863|ref|YP_003542356.1| - 1.5 8.1 8.7 0.85 8.9 0.1 2.1 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Enkurin PF13864.1 gi|294495863|ref|YP_003542356.1| - 1.5 9.0 8.7 1.5 9.0 1.5 2.3 2 0 0 2 2 2 0 Calmodulin-binding DUF1664 PF07889.7 gi|294495863|ref|YP_003542356.1| - 1.5 8.6 8.9 1.2 9.0 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Rho_Binding PF08912.6 gi|294495863|ref|YP_003542356.1| - 1.5 9.1 10.3 2.8 8.3 2.8 2.2 2 0 0 2 2 2 0 Rho Binding DUF3450 PF11932.3 gi|294495863|ref|YP_003542356.1| - 1.8 7.7 15.1 1.9 7.6 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4140 PF13600.1 gi|294495863|ref|YP_003542356.1| - 1.8 9.0 10.6 4.5 7.7 1.2 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Ax_dynein_light PF10211.4 gi|294495863|ref|YP_003542356.1| - 1.8 8.3 12.2 1.9 8.2 3.1 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain MitMem_reg PF13012.1 gi|294495863|ref|YP_003542356.1| - 1.9 8.5 8.2 0.39 10.7 1.7 2.1 1 1 0 2 2 2 0 Maintenance of mitochondrial structure and function CENP-Q PF13094.1 gi|294495863|ref|YP_003542356.1| - 2 8.4 11.8 0.56 10.2 3.2 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Mnd1 PF03962.10 gi|294495863|ref|YP_003542356.1| - 2.1 7.9 14.6 4.5 6.8 4.4 2.1 2 0 0 2 2 2 0 Mnd1 family GP41 PF00517.12 gi|294495863|ref|YP_003542356.1| - 2.3 7.7 13.5 0.72 9.3 3.4 2.1 2 0 0 2 2 2 0 Retroviral envelope protein Muted PF14942.1 gi|294495863|ref|YP_003542356.1| - 2.3 8.0 9.0 0.48 10.3 1.9 2.1 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein YlbD_coat PF14071.1 gi|294495863|ref|YP_003542356.1| - 2.7 8.0 12.4 0.35 10.9 3.2 2.1 2 0 0 2 2 2 0 Putative coat protein DUF3552 PF12072.3 gi|294495863|ref|YP_003542356.1| - 2.9 7.0 15.2 0.42 9.8 4.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) V_ATPase_I PF01496.14 gi|294495863|ref|YP_003542356.1| - 3 5.5 10.2 1.4 6.6 2.5 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Spc7 PF08317.6 gi|294495863|ref|YP_003542356.1| - 3.5 6.1 14.4 24 3.4 10.0 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein AAA_13 PF13166.1 gi|294495863|ref|YP_003542356.1| - 4.1 5.7 13.8 20 3.4 9.5 1.8 1 1 0 1 1 1 0 AAA domain HR1 PF02185.11 gi|294495863|ref|YP_003542356.1| - 4.2 7.1 15.6 7.1 6.4 3.8 2.9 2 1 0 2 2 2 0 Hr1 repeat DUF4446 PF14584.1 gi|294495863|ref|YP_003542356.1| - 4.2 7.1 6.3 2.3 8.0 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) DUF2400 PF09674.5 gi|294495863|ref|YP_003542356.1| - 5.1 6.7 6.9 5.7 6.5 1.2 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF2400) UPF0449 PF15136.1 gi|294495863|ref|YP_003542356.1| - 5.6 7.2 9.4 4.7 7.4 0.8 2.6 2 1 1 3 3 3 0 Uncharacterised protein family UPF0449 HAUS-augmin3 PF14932.1 gi|294495863|ref|YP_003542356.1| - 5.7 6.0 13.3 2.2 7.4 3.1 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 FliD_C PF07195.7 gi|294495863|ref|YP_003542356.1| - 5.9 6.1 13.5 4.4e+02 -0.1 9.3 2.1 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Atg14 PF10186.4 gi|294495863|ref|YP_003542356.1| - 6 5.7 13.1 3.4 6.5 1.9 2.0 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 T2SM PF04612.7 gi|294495863|ref|YP_003542356.1| - 6 6.6 12.3 2.7 7.7 3.2 2.1 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M EAP30 PF04157.11 gi|294495863|ref|YP_003542356.1| - 8.2 5.5 11.0 3.7 6.6 0.9 2.2 2 0 0 2 2 2 0 EAP30/Vps36 family FlaC_arch PF05377.6 gi|294495863|ref|YP_003542356.1| - 8.2 6.4 7.6 15 5.5 1.6 2.6 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Nup54 PF13874.1 gi|294495863|ref|YP_003542356.1| - 9.9 5.8 17.7 1.1 8.9 4.8 2.5 2 1 1 3 3 2 0 Nucleoporin complex subunit 54 Ribosomal_L18ae PF01775.12 gi|294495864|ref|YP_003542357.1| - 6.9e-09 35.6 0.1 7.5e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain eIF-6 PF01912.13 gi|294495865|ref|YP_003542358.1| - 9.7e-65 217.3 4.2 1.3e-64 217.0 2.9 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|294495866|ref|YP_003542359.1| - 2.8e-24 84.5 0.2 3.3e-24 84.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.15 gi|294495867|ref|YP_003542360.1| - 2.8e-18 65.0 9.5 3.7e-18 64.7 6.6 1.2 1 0 0 1 1 1 1 Ribosomal L39 protein DUF4100 PF13352.1 gi|294495867|ref|YP_003542360.1| - 0.12 11.7 0.8 0.13 11.7 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4100) Asn_synthase PF00733.16 gi|294495868|ref|YP_003542361.1| - 0.00076 19.0 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|294495868|ref|YP_003542361.1| - 0.065 12.5 0.0 0.09 12.0 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|294495868|ref|YP_003542361.1| - 0.07 12.4 0.1 0.16 11.3 0.0 1.9 1 1 0 1 1 1 0 ATP-binding region dsDNA_bind PF01984.15 gi|294495869|ref|YP_003542362.1| - 1.5e-27 95.7 17.7 1.7e-27 95.5 12.3 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain BsuBI_PstI_RE PF06616.6 gi|294495869|ref|YP_003542362.1| - 0.14 10.8 3.2 0.15 10.8 2.2 1.1 1 0 0 1 1 1 0 BsuBI/PstI restriction endonuclease C-terminus DUF1018 PF06252.7 gi|294495869|ref|YP_003542362.1| - 0.15 12.5 5.3 0.2 12.1 1.9 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1018) IncFII_repA PF02387.10 gi|294495869|ref|YP_003542362.1| - 0.25 10.4 4.9 0.3 10.1 3.4 1.1 1 0 0 1 1 1 0 IncFII RepA protein family DUF2524 PF10732.4 gi|294495869|ref|YP_003542362.1| - 0.4 10.8 10.8 0.65 10.1 7.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2524) APH PF01636.18 gi|294495869|ref|YP_003542362.1| - 0.53 9.9 2.5 0.56 9.8 1.8 1.1 1 0 0 1 1 1 0 Phosphotransferase enzyme family Caps_synth_GfcC PF06251.6 gi|294495869|ref|YP_003542362.1| - 0.81 8.8 6.3 0.95 8.5 4.4 1.1 1 0 0 1 1 1 0 Capsule biosynthesis GfcC DUF3274 PF11678.3 gi|294495869|ref|YP_003542362.1| - 0.94 8.6 8.1 3.1 6.9 5.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3274) TAF8_C PF10406.4 gi|294495869|ref|YP_003542362.1| - 1.4 9.0 3.6 8.8 6.4 0.1 2.6 2 0 0 2 2 2 0 Transcription factor TFIID complex subunit 8 C-term MCPVI PF02993.9 gi|294495869|ref|YP_003542362.1| - 1.9 8.5 7.0 2.1 8.4 4.9 1.1 1 0 0 1 1 1 0 Minor capsid protein VI DUF2458 PF10454.4 gi|294495869|ref|YP_003542362.1| - 3 7.7 10.2 3.4 7.5 6.4 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2458) DUF702 PF05142.7 gi|294495869|ref|YP_003542362.1| - 3.1 7.9 5.7 3.7 7.6 4.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF702) AAA_13 PF13166.1 gi|294495869|ref|YP_003542362.1| - 6.2 5.1 8.6 7.3 4.9 5.9 1.0 1 0 0 1 1 1 0 AAA domain Ribosomal_S19e PF01090.14 gi|294495870|ref|YP_003542363.1| - 1.1e-57 193.3 0.5 1.3e-57 193.1 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.8 gi|294495870|ref|YP_003542363.1| - 0.029 14.0 0.0 3.9 7.1 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus RP1-2 PF12042.3 gi|294495870|ref|YP_003542363.1| - 0.11 12.1 0.1 0.15 11.7 0.1 1.1 1 0 0 1 1 1 0 Tubuliform egg casing silk strands structural domain Adenylsucc_synt PF00709.16 gi|294495871|ref|YP_003542364.1| - 2.2e-154 514.1 0.0 2.5e-154 514.0 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase TatC PF00902.13 gi|294495872|ref|YP_003542365.1| - 0.21 10.9 1.0 0.27 10.6 0.7 1.2 1 0 0 1 1 1 0 Sec-independent protein translocase protein (TatC) Ribosomal_S17e PF00833.13 gi|294495873|ref|YP_003542366.1| - 8.6e-12 44.8 1.2 8.9e-12 44.8 0.8 1.0 1 0 0 1 1 1 1 Ribosomal S17 DHDPS PF00701.17 gi|294495874|ref|YP_003542367.1| - 1.1e-97 326.1 0.4 1.2e-97 325.9 0.3 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PA PF02225.17 gi|294495874|ref|YP_003542367.1| - 0.021 14.4 2.6 0.056 13.1 0.2 2.5 2 1 1 3 3 3 0 PA domain DapB_C PF05173.9 gi|294495875|ref|YP_003542368.1| - 1.6e-49 167.0 0.4 2.2e-49 166.6 0.3 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|294495875|ref|YP_003542368.1| - 2.2e-31 108.3 1.3 3.4e-31 107.7 0.9 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|294495875|ref|YP_003542368.1| - 0.00018 21.8 0.4 0.00033 20.9 0.3 1.6 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain PyrI PF01948.13 gi|294495876|ref|YP_003542369.1| - 2.2e-31 107.7 0.4 3.2e-31 107.2 0.3 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|294495876|ref|YP_003542369.1| - 2.4e-18 65.2 5.4 4e-18 64.5 3.8 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.16 gi|294495877|ref|YP_003542370.1| - 2.9e-45 153.4 0.0 9.8e-45 151.6 0.0 1.8 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|294495877|ref|YP_003542370.1| - 1e-39 135.9 0.0 1.7e-39 135.2 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Methyltransf_6 PF03737.10 gi|294495878|ref|YP_003542371.1| - 2.5e-38 131.3 1.0 2.5e-38 131.3 0.7 2.0 2 0 0 2 2 2 1 Demethylmenaquinone methyltransferase OMPdecase PF00215.19 gi|294495878|ref|YP_003542371.1| - 1.1e-21 77.2 7.2 2.6e-21 76.0 5.0 1.7 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family HMGL-like PF00682.14 gi|294495878|ref|YP_003542371.1| - 5.2e-07 29.5 4.6 4.8e-05 23.1 0.3 2.8 1 1 1 3 3 3 2 HMGL-like NanE PF04131.9 gi|294495878|ref|YP_003542371.1| - 1.2e-05 24.4 3.2 1.2e-05 24.4 2.2 2.2 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase Aldolase PF01081.14 gi|294495878|ref|YP_003542371.1| - 5.2e-05 22.5 2.6 0.0013 17.8 0.2 2.3 2 0 0 2 2 2 1 KDPG and KHG aldolase PcrB PF01884.12 gi|294495878|ref|YP_003542371.1| - 0.00018 20.8 1.1 0.00018 20.8 0.8 3.1 4 0 0 4 4 4 1 PcrB family IGPS PF00218.16 gi|294495878|ref|YP_003542371.1| - 0.00037 19.6 0.7 0.00058 18.9 0.5 1.3 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase PEP_mutase PF13714.1 gi|294495878|ref|YP_003542371.1| - 0.001 18.3 0.9 0.013 14.7 0.1 2.3 1 1 0 2 2 2 1 Phosphoenolpyruvate phosphomutase Trp_syntA PF00290.15 gi|294495878|ref|YP_003542371.1| - 0.0018 16.8 2.1 0.099 11.1 0.1 3.1 2 1 1 3 3 3 1 Tryptophan synthase alpha chain Ribul_P_3_epim PF00834.14 gi|294495878|ref|YP_003542371.1| - 0.079 12.0 3.5 0.61 9.1 2.1 2.3 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family Glyco_hydro_3 PF00933.16 gi|294495878|ref|YP_003542371.1| - 0.14 11.1 3.1 1.9 7.3 0.1 2.5 2 0 0 2 2 2 0 Glycosyl hydrolase family 3 N terminal domain Mur_ligase PF01225.20 gi|294495878|ref|YP_003542371.1| - 0.36 10.9 2.0 28 4.8 0.0 4.1 4 1 1 5 5 5 0 Mur ligase family, catalytic domain Arc_PepC_II PF06847.6 gi|294495879|ref|YP_003542372.1| - 2.6e-25 88.6 0.0 7.7e-25 87.1 0.0 1.8 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|294495879|ref|YP_003542372.1| - 1.2e-11 44.6 10.1 1.2e-11 44.6 7.0 1.6 2 0 0 2 2 2 1 Type IV leader peptidase family RQC PF09382.5 gi|294495880|ref|YP_003542373.1| - 3e-24 84.7 0.0 8.1e-24 83.3 0.0 1.8 2 0 0 2 2 2 1 RQC domain DEAD PF00270.24 gi|294495880|ref|YP_003542373.1| - 7.6e-21 74.3 0.0 1.8e-19 69.8 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase HRDC PF00570.18 gi|294495880|ref|YP_003542373.1| - 2.3e-20 72.0 0.0 4.4e-20 71.1 0.0 1.4 1 0 0 1 1 1 1 HRDC domain Helicase_C PF00271.26 gi|294495880|ref|YP_003542373.1| - 4.5e-19 68.0 0.0 3.9e-18 65.0 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|294495880|ref|YP_003542373.1| - 0.0008 19.2 0.0 0.012 15.5 0.0 2.5 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit Helicase_Sgs1 PF11408.3 gi|294495880|ref|YP_003542373.1| - 0.0031 17.3 0.0 0.0068 16.2 0.0 1.5 1 0 0 1 1 1 1 Sgs1 RecQ helicase Helicase_C_4 PF13871.1 gi|294495880|ref|YP_003542373.1| - 0.044 13.1 0.0 0.1 11.9 0.0 1.6 1 0 0 1 1 1 0 Helicase_C-like GMP_synt_C PF00958.17 gi|294495881|ref|YP_003542374.1| - 3e-28 97.3 0.0 5.7e-28 96.4 0.0 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|294495881|ref|YP_003542374.1| - 7.6e-12 44.6 0.1 2.4e-06 26.6 0.0 2.1 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|294495881|ref|YP_003542374.1| - 2.3e-05 23.1 0.0 0.0026 16.3 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.8 gi|294495881|ref|YP_003542374.1| - 0.0001 21.6 0.0 0.0009 18.5 0.0 2.0 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|294495881|ref|YP_003542374.1| - 0.00016 21.2 0.1 0.00029 20.4 0.0 1.4 2 0 0 2 2 2 1 Asparagine synthase Arginosuc_synth PF00764.14 gi|294495881|ref|YP_003542374.1| - 0.0002 20.5 0.1 0.00038 19.6 0.0 1.5 2 0 0 2 2 2 1 Arginosuccinate synthase ThiI PF02568.9 gi|294495881|ref|YP_003542374.1| - 0.015 14.7 0.1 0.042 13.3 0.1 1.9 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.14 gi|294495881|ref|YP_003542374.1| - 0.081 12.7 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Radical_SAM PF04055.16 gi|294495882|ref|YP_003542375.1| - 7.8e-06 26.1 0.1 1.5e-05 25.2 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily AA_kinase PF00696.23 gi|294495883|ref|YP_003542376.1| - 1.9e-42 145.4 2.9 2.2e-42 145.2 2.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family MC1 PF05854.6 gi|294495884|ref|YP_003542377.1| - 4.8e-43 145.0 2.2 5.3e-43 144.9 1.5 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 GCHY-1 PF02649.9 gi|294495885|ref|YP_003542378.1| - 8.1e-91 304.0 5.3 9.2e-91 303.8 3.7 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF2098 PF09871.4 gi|294495886|ref|YP_003542379.1| - 1.9e-21 75.8 1.5 2.1e-21 75.6 1.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) NTP_transf_2 PF01909.18 gi|294495887|ref|YP_003542380.1| - 5.4e-05 23.4 0.0 0.00013 22.2 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain Acetyltransf_1 PF00583.19 gi|294495888|ref|YP_003542381.1| - 4.1e-13 49.1 0.0 6.3e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|294495888|ref|YP_003542381.1| - 1.5e-10 41.0 0.0 3.3e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|294495888|ref|YP_003542381.1| - 7.9e-08 32.4 0.0 1.1e-07 32.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|294495888|ref|YP_003542381.1| - 4.5e-05 23.4 0.0 6.3e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|294495888|ref|YP_003542381.1| - 7.7e-05 22.5 0.0 0.00035 20.4 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|294495888|ref|YP_003542381.1| - 0.0033 17.2 0.0 0.0075 16.1 0.0 1.6 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF1699 PF08004.6 gi|294495889|ref|YP_003542382.1| - 2.4e-29 101.5 0.2 2.7e-29 101.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Pox_VP8_L4R PF04498.7 gi|294495889|ref|YP_003542382.1| - 0.089 12.0 0.1 0.1 11.9 0.1 1.1 1 0 0 1 1 1 0 Poxvirus nucleic acid binding protein VP8/L4R TehB PF03848.9 gi|294495889|ref|YP_003542382.1| - 0.12 11.5 0.1 0.14 11.3 0.0 1.0 1 0 0 1 1 1 0 Tellurite resistance protein TehB UPF0066 PF01980.11 gi|294495890|ref|YP_003542383.1| - 3.4e-37 127.0 0.0 4e-37 126.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 Fer4 PF00037.22 gi|294495891|ref|YP_003542384.1| - 1.9e-11 43.0 12.0 2.2e-08 33.3 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294495891|ref|YP_003542384.1| - 1.9e-10 40.1 13.2 7.6e-07 28.7 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294495891|ref|YP_003542384.1| - 2e-07 31.2 16.2 2.6e-07 30.9 11.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294495891|ref|YP_003542384.1| - 2.7e-06 26.9 14.0 3.5e-05 23.4 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|294495891|ref|YP_003542384.1| - 3.9e-06 26.5 13.8 5e-06 26.2 9.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294495891|ref|YP_003542384.1| - 2.7e-05 24.3 15.9 3.8e-05 23.8 11.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294495891|ref|YP_003542384.1| - 2.8e-05 24.0 18.2 0.0008 19.5 3.1 2.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|294495891|ref|YP_003542384.1| - 4.7e-05 24.0 13.6 0.0043 17.7 1.5 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|294495891|ref|YP_003542384.1| - 0.0014 18.3 15.7 0.0039 17.0 10.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|294495891|ref|YP_003542384.1| - 0.0015 19.0 1.3 0.0015 19.0 0.9 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|294495891|ref|YP_003542384.1| - 0.0026 18.1 19.3 0.033 14.7 4.5 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|294495891|ref|YP_003542384.1| - 0.013 15.3 8.3 0.015 15.1 5.8 1.1 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294495891|ref|YP_003542384.1| - 0.014 15.4 17.3 0.054 13.5 12.0 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|294495891|ref|YP_003542384.1| - 0.015 15.7 3.0 0.015 15.7 2.1 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|294495891|ref|YP_003542384.1| - 0.023 15.0 5.2 0.023 15.0 3.6 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294495891|ref|YP_003542384.1| - 4.2 7.8 19.1 2.4 8.6 4.1 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Radical_SAM PF04055.16 gi|294495892|ref|YP_003542385.1| - 6.6e-09 36.1 0.4 2.3e-08 34.3 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|294495892|ref|YP_003542385.1| - 3e-06 27.4 0.3 9.4e-06 25.7 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|294495892|ref|YP_003542385.1| - 5.5e-06 26.3 0.1 1.3e-05 25.2 0.1 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2551 PF10826.3 gi|294495893|ref|YP_003542386.1| - 4.3e-33 113.0 0.9 5.1e-33 112.8 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) FUR PF01475.14 gi|294495893|ref|YP_003542386.1| - 0.027 14.3 0.0 0.035 14.0 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family Prenyltransf PF01255.14 gi|294495894|ref|YP_003542387.1| - 7.6e-75 250.8 0.1 9.7e-75 250.5 0.1 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase N6_N4_Mtase PF01555.13 gi|294495895|ref|YP_003542388.1| - 5.2e-32 111.1 0.9 5.2e-32 111.1 0.6 1.4 2 0 0 2 2 2 1 DNA methylase Methyltransf_26 PF13659.1 gi|294495895|ref|YP_003542388.1| - 2.1e-06 27.7 0.0 8.7e-06 25.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain N6_Mtase PF02384.11 gi|294495895|ref|YP_003542388.1| - 0.00014 21.0 0.0 0.015 14.3 0.0 2.2 2 0 0 2 2 2 2 N-6 DNA Methylase UPF0020 PF01170.13 gi|294495895|ref|YP_003542388.1| - 0.0025 17.4 0.1 0.0075 15.8 0.0 1.7 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|294495895|ref|YP_003542388.1| - 0.006 16.1 0.0 0.18 11.3 0.0 2.3 1 1 1 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|294495895|ref|YP_003542388.1| - 0.011 15.0 0.0 0.023 14.0 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|294495895|ref|YP_003542388.1| - 0.015 15.7 0.0 2.9 8.4 0.0 3.2 3 0 0 3 3 3 0 Methyltransferase domain Met_10 PF02475.11 gi|294495895|ref|YP_003542388.1| - 0.037 13.6 0.0 0.2 11.2 0.0 2.0 1 1 0 1 1 1 0 Met-10+ like-protein RNA_pol_A_bac PF01000.21 gi|294495898|ref|YP_003542391.1| - 3.4e-26 91.6 0.1 1.6e-25 89.3 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|294495898|ref|YP_003542391.1| - 2e-13 49.2 0.0 2.6e-13 48.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_10 PF13237.1 gi|294495898|ref|YP_003542391.1| - 4.6e-06 26.3 9.0 4.6e-06 26.3 6.2 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294495898|ref|YP_003542391.1| - 5.7e-06 26.9 10.1 0.013 16.2 0.6 3.2 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|294495898|ref|YP_003542391.1| - 3.5e-05 24.0 10.5 3.5e-05 24.0 7.3 2.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294495898|ref|YP_003542391.1| - 0.00012 22.2 9.9 0.00012 22.2 6.9 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294495898|ref|YP_003542391.1| - 0.00028 20.8 10.7 0.19 11.7 4.3 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|294495898|ref|YP_003542391.1| - 0.00066 19.1 13.2 0.0022 17.5 2.4 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294495898|ref|YP_003542391.1| - 0.022 14.6 3.2 0.022 14.6 2.2 3.3 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|294495898|ref|YP_003542391.1| - 0.048 13.5 3.8 0.048 13.5 2.6 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|294495898|ref|YP_003542391.1| - 0.067 13.5 24.5 0.068 13.5 1.5 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|294495898|ref|YP_003542391.1| - 0.069 13.5 12.9 1.3 9.4 3.3 3.0 2 1 0 2 2 2 0 4Fe-4S dicluster domain DUF1998 PF09369.5 gi|294495898|ref|YP_003542391.1| - 0.28 11.7 0.1 0.28 11.7 0.0 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1998) Fer4_21 PF14697.1 gi|294495898|ref|YP_003542391.1| - 6.1 6.7 22.4 0.72 9.7 9.6 2.9 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|294495898|ref|YP_003542391.1| - 6.5 7.5 28.7 0.19 12.3 2.3 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Ribosomal_S11 PF00411.14 gi|294495899|ref|YP_003542392.1| - 2e-41 140.6 0.8 2.3e-41 140.3 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.5 gi|294495899|ref|YP_003542392.1| - 0.033 13.6 0.3 0.052 13.0 0.2 1.4 1 1 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) S4 PF01479.20 gi|294495900|ref|YP_003542393.1| - 8.7e-14 50.6 0.0 1.8e-13 49.6 0.0 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|294495900|ref|YP_003542393.1| - 0.038 14.3 2.0 0.1 13.0 0.3 2.2 2 1 0 2 2 2 0 Ribosomal protein S4/S9 N-terminal domain DUF910 PF06014.6 gi|294495900|ref|YP_003542393.1| - 0.12 12.3 0.0 0.29 11.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF910) Ribosomal_S13 PF00416.17 gi|294495901|ref|YP_003542394.1| - 3e-32 111.2 0.6 3.7e-32 110.9 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|294495901|ref|YP_003542394.1| - 0.012 14.1 0.0 0.012 14.1 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) HHH PF00633.18 gi|294495901|ref|YP_003542394.1| - 0.026 14.1 0.1 0.061 13.0 0.1 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|294495901|ref|YP_003542394.1| - 0.027 14.5 0.0 0.05 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|294495901|ref|YP_003542394.1| - 0.032 14.4 0.1 0.32 11.2 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH_5 PF14520.1 gi|294495901|ref|YP_003542394.1| - 0.07 13.3 0.1 0.17 12.0 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain DJ-1_PfpI PF01965.19 gi|294495903|ref|YP_003542396.1| - 4.6e-33 113.7 0.1 5.6e-33 113.4 0.1 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|294495903|ref|YP_003542396.1| - 8.6e-17 60.8 0.0 1.1e-16 60.5 0.0 1.0 1 0 0 1 1 1 1 Putative amidotransferase Exonuc_VII_L PF02601.10 gi|294495903|ref|YP_003542396.1| - 0.014 14.5 0.0 0.022 13.9 0.0 1.4 1 0 0 1 1 1 0 Exonuclease VII, large subunit FKBP_C PF00254.23 gi|294495904|ref|YP_003542397.1| - 1.1e-11 44.5 0.4 4.3e-11 42.6 0.1 2.0 1 1 1 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase HATPase_c PF02518.21 gi|294495905|ref|YP_003542398.1| - 1.1e-31 108.8 0.1 2.6e-31 107.5 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|294495905|ref|YP_003542398.1| - 2.9e-17 62.5 0.0 1e-16 60.8 0.0 1.9 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|294495905|ref|YP_003542398.1| - 2.2e-14 53.1 0.1 5.3e-14 51.9 0.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|294495905|ref|YP_003542398.1| - 1.9e-10 40.9 0.0 3.8e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|294495905|ref|YP_003542398.1| - 2.3e-05 24.9 0.0 6.4e-05 23.4 0.0 1.8 1 1 0 1 1 1 1 GAF domain HATPase_c_3 PF13589.1 gi|294495905|ref|YP_003542398.1| - 4.1e-05 23.2 0.1 7.9e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|294495905|ref|YP_003542398.1| - 0.0021 17.8 0.0 0.0043 16.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.1 gi|294495905|ref|YP_003542398.1| - 0.0035 17.0 0.1 0.012 15.2 0.1 1.9 1 0 0 1 1 1 1 GHKL domain Rep_N PF08724.5 gi|294495905|ref|YP_003542398.1| - 0.12 11.8 0.0 3.8 7.0 0.0 2.7 2 1 1 3 3 3 0 Rep protein catalytic domain like GAF PF01590.21 gi|294495905|ref|YP_003542398.1| - 0.13 12.3 0.0 0.28 11.2 0.0 1.6 1 1 0 1 1 1 0 GAF domain PAS_9 PF13426.1 gi|294495906|ref|YP_003542399.1| - 7.4e-30 103.3 0.4 6.2e-10 39.3 0.0 3.7 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|294495906|ref|YP_003542399.1| - 4.1e-22 77.9 0.0 1.1e-21 76.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|294495906|ref|YP_003542399.1| - 4.6e-21 74.9 0.0 4.8e-07 29.7 0.0 3.6 3 1 0 3 3 3 3 PAS fold PAS PF00989.19 gi|294495906|ref|YP_003542399.1| - 1.4e-19 69.9 0.0 5.6e-07 29.3 0.0 3.9 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|294495906|ref|YP_003542399.1| - 4.4e-11 42.2 0.0 7.7e-06 25.5 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|294495906|ref|YP_003542399.1| - 6.4e-09 35.7 0.0 5.2e-06 26.4 0.0 3.4 3 0 0 3 3 3 1 PAS fold HisKA PF00512.20 gi|294495906|ref|YP_003542399.1| - 1.1e-07 31.7 0.1 2.7e-07 30.4 0.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|294495906|ref|YP_003542399.1| - 1.4e-05 25.2 0.0 2.6e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.1 gi|294495906|ref|YP_003542399.1| - 0.00017 21.2 0.1 0.0014 18.2 0.0 2.6 2 0 0 2 2 2 1 GHKL domain PAS_10 PF13596.1 gi|294495906|ref|YP_003542399.1| - 0.00025 21.2 0.1 0.5 10.6 0.0 4.1 4 0 0 4 4 4 1 PAS domain PAS_7 PF12860.2 gi|294495906|ref|YP_003542399.1| - 0.0006 19.7 0.0 0.21 11.6 0.0 3.4 2 1 0 2 2 2 1 PAS fold GAF_2 PF13185.1 gi|294495906|ref|YP_003542399.1| - 0.0012 19.3 0.0 0.0024 18.3 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|294495906|ref|YP_003542399.1| - 0.0026 17.5 0.0 0.0056 16.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain IF4E PF01652.13 gi|294495906|ref|YP_003542399.1| - 0.024 14.1 0.0 0.067 12.7 0.0 1.7 1 0 0 1 1 1 0 Eukaryotic initiation factor 4E DUF39 PF01837.11 gi|294495907|ref|YP_003542400.1| - 2e-145 483.7 0.2 2.6e-145 483.3 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF39 CBS PF00571.23 gi|294495907|ref|YP_003542400.1| - 3.3e-25 87.5 2.1 4.6e-15 55.1 0.1 2.6 2 0 0 2 2 2 2 CBS domain Fer4 PF00037.22 gi|294495908|ref|YP_003542401.1| - 7e-15 53.9 12.2 1.8e-07 30.4 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|294495908|ref|YP_003542401.1| - 2.1e-12 47.1 22.0 7.5e-09 35.7 8.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294495908|ref|YP_003542401.1| - 6.7e-12 45.6 23.0 6.3e-10 39.2 7.9 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294495908|ref|YP_003542401.1| - 4.1e-11 42.1 14.6 1.3e-05 24.8 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|294495908|ref|YP_003542401.1| - 2.1e-10 40.4 4.8 6.7e-05 22.8 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|294495908|ref|YP_003542401.1| - 2.2e-09 37.5 3.0 0.00086 19.6 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294495908|ref|YP_003542401.1| - 2.2e-09 36.7 14.4 0.00017 21.3 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|294495908|ref|YP_003542401.1| - 4.2e-09 37.0 8.9 0.00045 20.8 1.6 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|294495908|ref|YP_003542401.1| - 5.1e-09 35.7 13.6 2.4e-08 33.6 9.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294495908|ref|YP_003542401.1| - 3e-07 30.2 13.0 0.00074 19.6 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|294495908|ref|YP_003542401.1| - 1.5e-06 28.5 13.4 0.00028 21.2 1.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|294495908|ref|YP_003542401.1| - 2.9e-06 27.5 13.6 0.0011 19.2 1.1 2.6 3 0 0 3 3 2 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|294495908|ref|YP_003542401.1| - 7.9e-06 25.6 14.5 0.0035 17.1 2.0 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain NIL PF09383.5 gi|294495908|ref|YP_003542401.1| - 1.6e-05 24.3 0.1 2e-05 24.0 0.1 1.1 1 0 0 1 1 1 1 NIL domain Fer4_3 PF12798.2 gi|294495908|ref|YP_003542401.1| - 0.0001 22.6 19.2 0.042 14.4 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|294495908|ref|YP_003542401.1| - 0.00046 20.7 16.2 0.0015 19.0 1.9 3.0 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|294495908|ref|YP_003542401.1| - 0.0016 18.3 4.8 0.0029 17.4 3.3 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain UPF0180 PF03698.8 gi|294495908|ref|YP_003542401.1| - 0.077 12.8 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) DUF211 PF02680.9 gi|294495908|ref|YP_003542401.1| - 0.081 12.7 0.1 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized ArCR, COG1888 Fer4_19 PF06902.6 gi|294495908|ref|YP_003542401.1| - 0.095 12.5 4.8 0.16 11.7 3.3 1.5 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster c-SKI_SMAD_bind PF08782.5 gi|294495908|ref|YP_003542401.1| - 0.47 10.5 8.7 2.5 8.2 0.4 2.2 1 1 1 2 2 2 0 c-SKI Smad4 binding domain A2L_zn_ribbon PF08792.5 gi|294495908|ref|YP_003542401.1| - 1.2 8.7 6.6 2.2 7.8 0.4 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain ApbE PF02424.10 gi|294495909|ref|YP_003542402.1| - 9.4e-21 74.2 8.2 3.4e-20 72.4 5.7 1.8 1 1 0 1 1 1 1 ApbE family FtsZ_C PF12327.3 gi|294495911|ref|YP_003542404.1| - 3.9e-34 116.6 0.9 8.1e-34 115.5 0.1 2.0 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|294495911|ref|YP_003542404.1| - 6.9e-32 111.0 0.6 3.1e-31 108.8 0.4 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|294495911|ref|YP_003542404.1| - 0.038 13.8 0.7 0.22 11.3 0.0 2.5 3 0 0 3 3 3 0 ThiF family DUF4346 PF14251.1 gi|294495912|ref|YP_003542405.1| - 1e-10 41.3 0.1 3.9e-08 33.0 0.0 3.4 2 1 1 3 3 3 2 Domain of unknown function (DUF4346) Pterin_bind PF00809.17 gi|294495912|ref|YP_003542405.1| - 2.5e-10 40.0 0.8 4.2e-09 36.0 0.5 2.4 1 1 0 1 1 1 1 Pterin binding enzyme CdhD PF03599.11 gi|294495912|ref|YP_003542405.1| - 6.9e-07 28.0 0.4 1.7e-06 26.8 0.0 1.7 2 0 0 2 2 2 1 CO dehydrogenase/acetyl-CoA synthase delta subunit KCNQ_channel PF03520.9 gi|294495913|ref|YP_003542406.1| - 0.019 14.2 0.0 0.026 13.8 0.0 1.2 1 0 0 1 1 1 0 KCNQ voltage-gated potassium channel PAP_assoc PF03828.14 gi|294495913|ref|YP_003542406.1| - 0.13 12.2 0.3 5.4 7.0 0.1 2.4 2 1 0 2 2 2 0 Cid1 family poly A polymerase DUF4434 PF14488.1 gi|294495913|ref|YP_003542406.1| - 0.28 10.9 2.9 0.33 10.6 1.9 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4434) FAD_binding_3 PF01494.14 gi|294495914|ref|YP_003542407.1| - 1.1e-11 44.4 5.0 0.00013 21.1 0.1 3.1 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.19 gi|294495914|ref|YP_003542407.1| - 6.1e-10 38.5 4.7 5.1e-06 25.6 0.5 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|294495914|ref|YP_003542407.1| - 4e-09 36.6 0.1 9.1e-08 32.2 0.1 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|294495914|ref|YP_003542407.1| - 6.7e-08 32.0 2.8 1.2e-07 31.1 1.9 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|294495914|ref|YP_003542407.1| - 1.1e-07 31.1 0.2 2.7e-07 29.7 0.1 1.7 1 1 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|294495914|ref|YP_003542407.1| - 3.2e-07 29.1 0.6 5.7e-07 28.3 0.4 1.4 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|294495914|ref|YP_003542407.1| - 6.3e-07 29.3 0.4 6.6e-06 26.0 0.2 2.5 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|294495914|ref|YP_003542407.1| - 6.7e-07 28.5 0.0 8e-05 21.7 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|294495914|ref|YP_003542407.1| - 2.7e-06 26.5 0.7 4.9e-06 25.6 0.5 1.4 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|294495914|ref|YP_003542407.1| - 4e-06 26.0 0.1 1.5e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 Thi4 family Trp_halogenase PF04820.9 gi|294495914|ref|YP_003542407.1| - 8.9e-05 21.2 0.2 0.059 11.9 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.22 gi|294495914|ref|YP_003542407.1| - 0.00089 19.6 1.9 0.042 14.2 0.1 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|294495914|ref|YP_003542407.1| - 0.0019 18.3 0.5 0.0051 16.8 0.4 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DUF2274 PF10038.4 gi|294495914|ref|YP_003542407.1| - 0.013 15.6 0.0 0.034 14.2 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2274) 3HCDH_N PF02737.13 gi|294495914|ref|YP_003542407.1| - 0.014 15.1 1.3 0.032 13.8 0.9 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AIG2 PF06094.7 gi|294495915|ref|YP_003542408.1| - 1.1e-15 57.9 0.0 1.3e-15 57.7 0.0 1.1 1 0 0 1 1 1 1 AIG2-like family Radical_SAM PF04055.16 gi|294495916|ref|YP_003542409.1| - 1.8e-15 57.5 0.0 2.1e-15 57.2 0.0 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|294495916|ref|YP_003542409.1| - 2.2e-06 27.6 0.0 5.6e-06 26.3 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|294495916|ref|YP_003542409.1| - 1.4e-05 25.2 0.0 7.6e-05 22.8 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain MMR_HSR1 PF01926.18 gi|294495917|ref|YP_003542410.1| - 2.9e-15 56.2 0.1 4e-15 55.8 0.1 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|294495917|ref|YP_003542410.1| - 2.1e-11 43.3 0.9 2.5e-10 39.8 0.7 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|294495917|ref|YP_003542410.1| - 3.6e-05 23.2 0.1 0.0013 18.2 0.0 2.1 1 1 0 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|294495917|ref|YP_003542410.1| - 0.00062 19.6 0.4 0.0013 18.5 0.3 1.6 1 1 0 1 1 1 1 Dynamin family DUF258 PF03193.11 gi|294495917|ref|YP_003542410.1| - 0.0067 15.6 0.5 0.015 14.4 0.3 1.6 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|294495917|ref|YP_003542410.1| - 0.026 14.8 0.8 0.093 13.0 0.6 2.0 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|294495917|ref|YP_003542410.1| - 0.07 11.8 1.0 6.8 5.3 0.1 2.2 2 0 0 2 2 2 0 ArgK protein Septin PF00735.13 gi|294495917|ref|YP_003542410.1| - 0.078 11.9 0.1 0.14 11.1 0.0 1.4 1 1 0 1 1 1 0 Septin AAA_17 PF13207.1 gi|294495917|ref|YP_003542410.1| - 0.15 12.8 0.6 0.39 11.5 0.4 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|294495917|ref|YP_003542410.1| - 1 9.0 3.8 0.52 10.0 0.4 2.1 2 1 1 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B DHHA1 PF02272.14 gi|294495918|ref|YP_003542411.1| - 6.5e-14 51.3 0.0 1.3e-13 50.3 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|294495918|ref|YP_003542411.1| - 7.1e-08 32.2 0.0 1.3e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 DHH family TRAP_beta PF05753.9 gi|294495920|ref|YP_003542413.1| - 1.4e-11 43.8 5.1 0.00066 18.8 0.0 3.4 2 1 1 3 3 3 3 Translocon-associated protein beta (TRAPB) CARDB PF07705.6 gi|294495920|ref|YP_003542413.1| - 2.6e-10 40.2 8.1 0.012 15.6 1.3 3.9 3 1 0 3 3 3 3 CARDB DUF11 PF01345.13 gi|294495920|ref|YP_003542413.1| - 7.4e-08 32.3 4.1 0.0026 17.7 0.3 4.1 5 0 0 5 5 5 2 Domain of unknown function DUF11 DUF2393 PF09624.5 gi|294495920|ref|YP_003542413.1| - 4.4e-05 23.0 0.6 0.27 10.7 0.0 3.6 3 0 0 3 3 3 1 Protein of unknown function (DUF2393) fn3_3 PF14686.1 gi|294495920|ref|YP_003542413.1| - 0.00025 21.0 0.2 0.0017 18.4 0.1 2.5 2 0 0 2 2 2 1 Polysaccharide lyase family 4, domain II DUF1034 PF06280.7 gi|294495920|ref|YP_003542413.1| - 0.027 14.8 0.5 0.027 14.8 0.3 3.9 3 2 0 4 4 4 0 Fn3-like domain (DUF1034) NPCBM_assoc PF10633.4 gi|294495920|ref|YP_003542413.1| - 0.048 13.7 0.3 1.3 9.0 0.1 3.2 2 1 0 2 2 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF756 PF05506.7 gi|294495920|ref|YP_003542413.1| - 0.072 13.5 0.1 3.3 8.2 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF756) Transglut_C PF00927.17 gi|294495920|ref|YP_003542413.1| - 0.093 12.7 0.1 89 3.1 0.0 3.5 3 1 0 3 3 3 0 Transglutaminase family, C-terminal ig like domain UPF0182 PF03699.8 gi|294495921|ref|YP_003542414.1| - 2e-281 935.4 15.7 2.3e-281 935.2 10.9 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0182) FmdE PF02663.9 gi|294495922|ref|YP_003542415.1| - 1.2e-27 96.4 0.0 1.6e-27 95.9 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon DUF2318 PF10080.4 gi|294495922|ref|YP_003542415.1| - 0.022 14.5 0.9 0.034 13.8 0.6 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) HypA PF01155.14 gi|294495922|ref|YP_003542415.1| - 0.042 13.5 0.5 0.087 12.5 0.4 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|294495922|ref|YP_003542415.1| - 0.057 13.2 2.5 0.091 12.5 1.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF2039 PF10217.4 gi|294495922|ref|YP_003542415.1| - 0.069 13.1 2.4 0.13 12.2 1.7 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) Prok-RING_1 PF14446.1 gi|294495922|ref|YP_003542415.1| - 0.22 11.2 3.1 0.35 10.6 2.2 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 ADK_lid PF05191.9 gi|294495922|ref|YP_003542415.1| - 0.41 10.3 3.3 0.59 9.8 0.1 2.3 1 1 1 2 2 2 0 Adenylate kinase, active site lid Fer4 PF00037.22 gi|294495923|ref|YP_003542416.1| - 4.7e-54 177.9 93.6 9.4e-08 31.3 3.4 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294495923|ref|YP_003542416.1| - 9.2e-41 138.0 69.3 1.8e-11 44.2 8.0 5.7 4 1 2 6 6 6 6 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294495923|ref|YP_003542416.1| - 6.6e-37 123.8 87.3 6.4e-07 28.9 1.7 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_9 PF13187.1 gi|294495923|ref|YP_003542416.1| - 5.5e-36 122.6 68.8 1.7e-10 40.9 9.1 5.7 5 1 1 6 6 6 6 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294495923|ref|YP_003542416.1| - 1.5e-32 112.1 60.2 4.9e-10 39.9 4.2 7.1 6 1 1 7 7 7 7 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|294495923|ref|YP_003542416.1| - 2.6e-32 110.4 73.7 8.9e-09 35.0 8.6 7.1 3 1 5 8 8 8 8 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294495923|ref|YP_003542416.1| - 1.4e-29 101.7 76.0 1.9e-08 34.0 9.8 6.5 5 3 0 5 5 5 5 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294495923|ref|YP_003542416.1| - 6.1e-28 95.0 84.1 7.1e-06 25.6 2.7 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_8 PF13183.1 gi|294495923|ref|YP_003542416.1| - 1.9e-27 95.0 87.0 1.2e-09 38.0 3.7 5.9 2 2 4 6 6 6 6 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|294495923|ref|YP_003542416.1| - 4.8e-21 74.8 60.5 3.8e-07 30.3 6.9 6.3 4 1 2 6 6 6 6 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294495923|ref|YP_003542416.1| - 9.2e-21 72.3 85.2 0.0007 19.7 2.3 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_18 PF13746.1 gi|294495923|ref|YP_003542416.1| - 8.3e-15 54.9 80.8 0.0023 18.3 2.4 8.1 5 2 3 8 8 8 7 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|294495923|ref|YP_003542416.1| - 2.1e-13 49.7 116.4 0.0033 17.8 3.9 8.3 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_15 PF13459.1 gi|294495923|ref|YP_003542416.1| - 1.1e-12 48.3 72.1 0.015 15.8 1.0 8.6 7 2 1 8 8 8 6 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|294495923|ref|YP_003542416.1| - 1.2e-08 35.2 80.5 0.051 13.9 1.8 8.3 7 1 0 7 7 7 5 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|294495923|ref|YP_003542416.1| - 0.0015 18.3 51.8 0.32 10.8 12.2 5.7 1 1 5 6 6 6 3 4Fe-4S dicluster domain FTR PF01913.13 gi|294495923|ref|YP_003542416.1| - 0.24 11.0 2.3 14 5.4 0.1 3.1 3 0 0 3 3 3 0 Formylmethanofuran-tetrahydromethanopterin formyltransferase HCV_NS2 PF01538.13 gi|294495923|ref|YP_003542416.1| - 0.85 9.0 6.0 1.2 8.5 0.3 2.5 2 1 0 2 2 2 0 Hepatitis C virus non-structural protein NS2 Amidohydro_3 PF07969.6 gi|294495924|ref|YP_003542417.1| - 5.9e-70 236.5 0.1 7.4e-70 236.2 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|294495924|ref|YP_003542417.1| - 4.6e-11 42.3 0.3 1.7e-10 40.5 0.0 2.1 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|294495924|ref|YP_003542417.1| - 7.5e-07 29.4 0.2 8.2e-05 22.7 0.1 2.4 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|294495924|ref|YP_003542417.1| - 1e-06 28.6 0.0 0.013 15.1 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family GXGXG PF01493.14 gi|294495925|ref|YP_003542418.1| - 3.3e-39 133.9 20.4 4.7e-39 133.5 14.2 1.1 1 0 0 1 1 1 1 GXGXG motif DUF4098 PF13345.1 gi|294495925|ref|YP_003542418.1| - 1.1 9.2 5.7 0.33 10.9 0.2 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4098) Molydop_binding PF01568.16 gi|294495926|ref|YP_003542419.1| - 2.3e-12 46.6 0.0 2.8e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.17 gi|294495927|ref|YP_003542420.1| - 8.7e-19 67.5 0.0 2.2e-18 66.2 0.0 1.6 1 1 0 1 1 1 1 Molybdopterin oxidoreductase FdhD-NarQ PF02634.10 gi|294495928|ref|YP_003542421.1| - 5.2e-58 196.2 0.0 6.1e-58 196.0 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family DUF364 PF04016.7 gi|294495929|ref|YP_003542422.1| - 1.2e-39 134.9 0.0 2.1e-39 134.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|294495929|ref|YP_003542422.1| - 2.7e-11 43.4 0.0 4.8e-11 42.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4213) QRPTase_C PF01729.14 gi|294495930|ref|YP_003542423.1| - 2.6e-26 92.1 0.0 4.1e-26 91.5 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|294495930|ref|YP_003542423.1| - 2.6e-14 52.7 0.0 4.4e-14 52.0 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain B12-binding PF02310.14 gi|294495930|ref|YP_003542423.1| - 0.032 14.0 0.1 5.7 6.8 0.0 2.5 1 1 0 2 2 2 0 B12 binding domain NIF3 PF01784.13 gi|294495931|ref|YP_003542424.1| - 1.1e-55 188.8 0.9 1.3e-55 188.5 0.6 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) DUF1959 PF09218.5 gi|294495931|ref|YP_003542424.1| - 0.032 13.9 0.2 0.34 10.6 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1959) Ribosomal_L44 PF00935.14 gi|294495932|ref|YP_003542425.1| - 0.034 14.1 0.8 0.034 14.1 0.6 1.1 1 0 0 1 1 1 0 Ribosomal protein L44 Trm56 PF01994.11 gi|294495933|ref|YP_003542426.1| - 2.6e-51 172.4 0.0 3.1e-51 172.1 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Glycos_trans_3N PF02885.12 gi|294495934|ref|YP_003542427.1| - 1.8e-14 53.0 0.2 4.1e-14 51.8 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.16 gi|294495934|ref|YP_003542427.1| - 2.5e-11 43.4 1.7 4.3e-10 39.4 1.2 2.5 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain PYNP_C PF07831.8 gi|294495934|ref|YP_003542427.1| - 7.4e-06 25.3 0.0 2.3e-05 23.7 0.0 1.9 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Molydop_binding PF01568.16 gi|294495934|ref|YP_003542427.1| - 1.2e-05 25.0 0.1 3.7e-05 23.5 0.0 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|294495934|ref|YP_003542427.1| - 0.00071 19.4 0.1 0.0014 18.5 0.0 1.5 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Peptidase_C26 PF07722.8 gi|294495934|ref|YP_003542427.1| - 0.089 12.2 0.1 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 Fumerase_C PF05683.7 gi|294495935|ref|YP_003542428.1| - 2.7e-49 167.0 0.0 3.1e-49 166.9 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.9 gi|294495936|ref|YP_003542429.1| - 9.8e-93 310.1 0.5 1.1e-92 309.9 0.3 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) SBF PF01758.11 gi|294495937|ref|YP_003542430.1| - 2.4e-43 147.7 22.6 2.4e-43 147.7 15.7 2.8 3 0 0 3 3 3 2 Sodium Bile acid symporter family Usp PF00582.21 gi|294495938|ref|YP_003542431.1| - 1.8e-40 138.3 0.0 7.3e-20 71.5 0.0 2.0 2 0 0 2 2 2 2 Universal stress protein family RQC PF09382.5 gi|294495938|ref|YP_003542431.1| - 0.0006 19.5 0.4 0.03 14.0 0.0 2.7 2 2 0 2 2 2 1 RQC domain DUF2325 PF10087.4 gi|294495938|ref|YP_003542431.1| - 0.0074 16.0 0.0 0.29 11.0 0.0 2.6 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2325) DNA_photolyase PF00875.13 gi|294495938|ref|YP_003542431.1| - 0.019 14.7 0.1 0.16 11.7 0.0 2.1 2 0 0 2 2 2 0 DNA photolyase Fasciclin PF02469.17 gi|294495938|ref|YP_003542431.1| - 0.024 14.6 0.7 3.1 7.8 0.4 2.6 2 1 0 2 2 2 0 Fasciclin domain DUF935 PF06074.7 gi|294495938|ref|YP_003542431.1| - 0.044 12.5 0.1 0.082 11.6 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF935) Ribul_P_3_epim PF00834.14 gi|294495938|ref|YP_003542431.1| - 0.078 12.0 3.0 2.7 7.0 0.2 2.6 2 2 0 2 2 2 0 Ribulose-phosphate 3 epimerase family Nit_Regul_Hom PF10126.4 gi|294495938|ref|YP_003542431.1| - 3.5 7.4 7.4 1.2 8.9 0.3 3.0 2 2 1 3 3 3 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII DUF2450 PF10475.4 gi|294495939|ref|YP_003542432.1| - 0.023 13.5 0.0 0.028 13.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function N-terminal domain (DUF2450) DGC PF08859.6 gi|294495940|ref|YP_003542433.1| - 3.9e-35 120.0 1.5 5e-35 119.6 1.0 1.1 1 0 0 1 1 1 1 DGC domain MtrA PF04208.9 gi|294495941|ref|YP_003542434.1| - 1.1e-43 148.7 1.4 7.4e-42 142.7 1.0 2.0 1 1 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A Phage_int_SAM_3 PF14659.1 gi|294495941|ref|YP_003542434.1| - 0.012 15.8 3.7 2.6 8.3 0.3 2.8 2 1 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain FeS PF04060.8 gi|294495942|ref|YP_003542435.1| - 1.8e-11 43.4 0.7 3.6e-11 42.4 0.5 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster HTH_20 PF12840.2 gi|294495942|ref|YP_003542435.1| - 1.2e-06 28.2 0.1 4.8e-06 26.2 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|294495942|ref|YP_003542435.1| - 0.0001 21.8 0.0 0.00023 20.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family ArsR PF09824.4 gi|294495942|ref|YP_003542435.1| - 0.0034 16.7 0.8 0.018 14.3 0.0 2.0 2 0 0 2 2 2 1 ArsR transcriptional regulator HTH_45 PF14947.1 gi|294495942|ref|YP_003542435.1| - 0.0052 16.5 0.1 0.016 15.0 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix TBP PF00352.16 gi|294495942|ref|YP_003542435.1| - 0.01 15.1 0.0 0.027 13.8 0.0 1.7 1 0 0 1 1 1 0 Transcription factor TFIID (or TATA-binding protein, TBP) DUF2513 PF10711.4 gi|294495942|ref|YP_003542435.1| - 0.027 14.5 0.0 0.07 13.2 0.0 1.7 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF2083 PF09856.4 gi|294495942|ref|YP_003542435.1| - 0.15 11.7 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Predicted transcriptional regulator (DUF2083) Pox_A_type_inc PF04508.7 gi|294495942|ref|YP_003542435.1| - 0.27 11.1 2.9 1.7 8.6 0.4 2.6 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat DUF318 PF03773.8 gi|294495943|ref|YP_003542436.1| - 6.9e-11 41.6 11.0 1.1e-10 41.0 7.6 1.2 1 0 0 1 1 1 1 Predicted permease DUF318 PF03773.8 gi|294495944|ref|YP_003542437.1| - 2e-08 33.5 18.0 2.5e-08 33.2 12.5 1.1 1 0 0 1 1 1 1 Predicted permease Otopetrin PF03189.8 gi|294495944|ref|YP_003542437.1| - 0.38 9.6 7.5 0.05 12.5 2.6 1.4 1 1 0 1 1 1 0 Otopetrin DUF2298 PF10060.4 gi|294495944|ref|YP_003542437.1| - 0.79 8.4 10.1 0.86 8.3 7.0 1.0 1 0 0 1 1 1 0 Uncharacterized membrane protein (DUF2298) Yip1 PF04893.12 gi|294495944|ref|YP_003542437.1| - 9.9 5.6 16.9 63 3.0 11.7 2.1 1 1 0 1 1 1 0 Yip1 domain Cupin_2 PF07883.6 gi|294495945|ref|YP_003542438.1| - 0.04 13.4 0.0 0.059 12.8 0.0 1.2 1 0 0 1 1 1 0 Cupin domain PadR PF03551.9 gi|294495946|ref|YP_003542439.1| - 2.8e-22 78.2 0.1 3.6e-22 77.8 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HxlR PF01638.12 gi|294495946|ref|YP_003542439.1| - 0.0023 17.5 0.8 0.0034 16.9 0.5 1.4 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|294495946|ref|YP_003542439.1| - 0.024 14.6 0.0 0.036 14.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|294495946|ref|YP_003542439.1| - 0.11 12.1 0.2 0.23 11.1 0.1 1.7 1 1 0 1 1 1 0 MarR family Cytochrome_C554 PF13435.1 gi|294495947|ref|YP_003542440.1| - 2.5e-12 46.9 27.8 4.3e-06 26.8 4.3 5.4 3 2 1 4 4 4 3 Cytochrome c554 and c-prime Paired_CXXCH_1 PF09699.5 gi|294495947|ref|YP_003542440.1| - 1.3e-10 40.5 27.3 0.00046 19.6 1.8 6.5 6 0 0 6 6 6 2 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_c3_2 PF14537.1 gi|294495947|ref|YP_003542440.1| - 1.5e-10 41.2 26.1 0.00012 22.3 4.4 5.4 4 1 2 6 6 6 3 Cytochrome c3 Cytochrome_C7 PF14522.1 gi|294495947|ref|YP_003542440.1| - 2.7e-10 39.7 30.6 0.0041 16.7 6.2 6.2 4 2 1 5 5 5 4 Cytochrome c7 CarboxypepD_reg PF13620.1 gi|294495947|ref|YP_003542440.1| - 1.7e-09 37.6 2.9 3.7e-09 36.5 2.0 1.6 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|294495947|ref|YP_003542440.1| - 1.2e-07 31.6 0.4 3.9e-07 30.0 0.2 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4480) Cytochrom_NNT PF03264.9 gi|294495947|ref|YP_003542440.1| - 0.0079 15.6 26.0 0.51 9.7 1.1 6.5 5 2 2 7 7 7 3 NapC/NirT cytochrome c family, N-terminal region E6 PF00518.12 gi|294495947|ref|YP_003542440.1| - 0.039 14.2 0.9 0.14 12.4 0.0 2.3 3 0 0 3 3 2 0 Early Protein (E6) DUF4330 PF14221.1 gi|294495947|ref|YP_003542440.1| - 0.056 13.3 0.6 0.13 12.0 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) Cytochrom_CIII PF02085.11 gi|294495947|ref|YP_003542440.1| - 0.063 13.3 30.8 10 6.2 2.4 6.2 4 2 1 5 5 5 0 Class III cytochrome C family DUF2012 PF09430.5 gi|294495947|ref|YP_003542440.1| - 0.11 12.2 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2012) Cytochrome_CBB3 PF13442.1 gi|294495947|ref|YP_003542440.1| - 0.12 12.5 40.9 0.33 11.1 0.4 8.1 5 2 2 7 7 6 0 Cytochrome C oxidase, cbb3-type, subunit III HTH_5 PF01022.15 gi|294495948|ref|YP_003542441.1| - 7e-20 70.4 0.7 1.4e-19 69.4 0.5 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|294495948|ref|YP_003542441.1| - 2.1e-13 49.8 0.1 6.4e-13 48.3 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|294495948|ref|YP_003542441.1| - 0.00025 20.3 0.2 0.0006 19.1 0.1 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|294495948|ref|YP_003542441.1| - 0.0012 18.4 0.0 0.002 17.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|294495948|ref|YP_003542441.1| - 0.007 15.9 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|294495948|ref|YP_003542441.1| - 0.0081 15.8 0.1 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|294495948|ref|YP_003542441.1| - 0.027 14.1 0.0 0.043 13.4 0.0 1.2 1 0 0 1 1 1 0 Homeodomain-like domain HTH_27 PF13463.1 gi|294495948|ref|YP_003542441.1| - 0.1 12.9 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF3505 PF12013.3 gi|294495948|ref|YP_003542441.1| - 0.12 12.6 0.6 0.16 12.1 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3505) DUF169 PF02596.10 gi|294495949|ref|YP_003542442.1| - 1.3e-56 191.4 0.0 1.5e-56 191.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Clathrin-link PF09268.5 gi|294495949|ref|YP_003542442.1| - 0.057 12.4 0.0 0.13 11.3 0.0 1.6 1 0 0 1 1 1 0 Clathrin, heavy-chain linker DUF4428 PF14471.1 gi|294495950|ref|YP_003542443.1| - 0.01 15.5 2.9 0.014 15.0 2.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) zf-C3HC4_2 PF13923.1 gi|294495950|ref|YP_003542443.1| - 0.31 11.1 4.8 0.48 10.5 3.3 1.4 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_3 PF13920.1 gi|294495950|ref|YP_003542443.1| - 0.63 9.7 6.9 1.3 8.7 4.8 1.6 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Methyltransf_31 PF13847.1 gi|294495951|ref|YP_003542444.1| - 3.2e-38 130.7 1.3 3.4e-38 130.6 0.2 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|294495951|ref|YP_003542444.1| - 2.2e-23 82.5 0.0 4.7e-23 81.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|294495951|ref|YP_003542444.1| - 3.4e-18 66.2 0.1 9.5e-18 64.8 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|294495951|ref|YP_003542444.1| - 6.9e-18 64.6 1.7 1.4e-17 63.5 0.2 1.9 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|294495951|ref|YP_003542444.1| - 7e-15 55.2 0.0 1.6e-14 54.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|294495951|ref|YP_003542444.1| - 2.5e-14 53.3 0.0 4.3e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|294495951|ref|YP_003542444.1| - 1.1e-13 51.4 0.0 2.4e-13 50.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|294495951|ref|YP_003542444.1| - 7.7e-12 45.1 0.1 1.5e-11 44.2 0.0 1.5 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.1 gi|294495951|ref|YP_003542444.1| - 1e-11 44.8 0.0 1.6e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain HTH_5 PF01022.15 gi|294495951|ref|YP_003542444.1| - 1.5e-11 43.7 0.1 3e-11 42.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MTS PF05175.9 gi|294495951|ref|YP_003542444.1| - 3.6e-11 42.7 0.0 7.6e-11 41.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase small domain HTH_20 PF12840.2 gi|294495951|ref|YP_003542444.1| - 7.6e-10 38.4 0.0 1.3e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain UPF0020 PF01170.13 gi|294495951|ref|YP_003542444.1| - 8.8e-09 35.1 0.0 1.9e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|294495951|ref|YP_003542444.1| - 1.1e-07 31.2 0.2 1.9e-07 30.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|294495951|ref|YP_003542444.1| - 7.6e-07 28.9 0.1 2.8e-05 23.8 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|294495951|ref|YP_003542444.1| - 1.2e-05 25.0 0.2 4.1e-05 23.3 0.2 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.15 gi|294495951|ref|YP_003542444.1| - 4.2e-05 22.7 0.0 6.8e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.5 gi|294495951|ref|YP_003542444.1| - 0.00012 21.7 0.0 0.00025 20.6 0.0 1.6 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase GCD14 PF08704.5 gi|294495951|ref|YP_003542444.1| - 0.00079 19.0 0.0 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit FtsJ PF01728.14 gi|294495951|ref|YP_003542444.1| - 0.0016 18.4 0.3 0.0047 16.9 0.0 1.8 2 0 0 2 2 2 1 FtsJ-like methyltransferase Methyltransf_4 PF02390.12 gi|294495951|ref|YP_003542444.1| - 0.0041 16.1 0.0 0.011 14.8 0.0 1.7 1 1 0 1 1 1 1 Putative methyltransferase GidB PF02527.10 gi|294495951|ref|YP_003542444.1| - 0.0046 16.1 0.0 0.0075 15.4 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_3 PF01596.12 gi|294495951|ref|YP_003542444.1| - 0.015 14.3 0.0 0.03 13.3 0.0 1.6 1 0 0 1 1 1 0 O-methyltransferase RepL PF05732.6 gi|294495951|ref|YP_003542444.1| - 0.016 14.4 0.0 0.031 13.5 0.0 1.4 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_Crp_2 PF13545.1 gi|294495951|ref|YP_003542444.1| - 0.027 14.2 0.0 0.091 12.5 0.0 1.8 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|294495951|ref|YP_003542444.1| - 0.044 13.1 0.0 0.18 11.2 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.11 gi|294495951|ref|YP_003542444.1| - 0.046 13.7 0.0 0.092 12.8 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_27 PF13463.1 gi|294495951|ref|YP_003542444.1| - 0.082 13.2 0.0 0.2 12.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|294495951|ref|YP_003542444.1| - 0.17 11.4 0.0 0.97 9.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain RrnaAD PF00398.15 gi|294495951|ref|YP_003542444.1| - 0.18 10.8 0.0 0.26 10.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase AhpC-TSA PF00578.16 gi|294495952|ref|YP_003542445.1| - 1.8e-29 101.9 0.0 2.8e-29 101.3 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.4 gi|294495952|ref|YP_003542445.1| - 4.8e-16 58.1 0.4 9.1e-16 57.2 0.3 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.5 gi|294495952|ref|YP_003542445.1| - 1.9e-09 37.2 0.0 3.9e-09 36.1 0.0 1.6 1 1 0 1 1 1 1 Redoxin DUF4511 PF14974.1 gi|294495952|ref|YP_003542445.1| - 0.079 12.7 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4511) Cytochrom_C PF00034.16 gi|294495953|ref|YP_003542446.1| - 7.8e-09 36.2 0.0 1.9e-08 34.9 0.0 1.7 1 1 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.1 gi|294495953|ref|YP_003542446.1| - 8.3e-07 29.0 0.0 1.4e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III SHOCT PF09851.4 gi|294495954|ref|YP_003542447.1| - 1.4e-09 37.0 2.8 2.1e-09 36.5 1.9 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1517 PF07466.6 gi|294495954|ref|YP_003542447.1| - 0.013 14.5 0.0 0.014 14.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1517) GvpG PF05120.7 gi|294495954|ref|YP_003542447.1| - 0.17 11.7 1.3 0.18 11.6 0.7 1.3 1 1 0 1 1 1 0 Gas vesicle protein G Methyltransf_31 PF13847.1 gi|294495955|ref|YP_003542448.1| - 8e-16 57.9 0.1 1e-15 57.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|294495955|ref|YP_003542448.1| - 3.3e-14 52.5 0.0 3.7e-14 52.4 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|294495955|ref|YP_003542448.1| - 3.5e-12 46.6 0.0 5.4e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|294495955|ref|YP_003542448.1| - 8.3e-12 45.6 0.0 1.3e-11 45.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|294495955|ref|YP_003542448.1| - 2.3e-11 43.6 0.0 3.2e-11 43.1 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|294495955|ref|YP_003542448.1| - 4.1e-09 36.8 0.0 6.5e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|294495955|ref|YP_003542448.1| - 8.2e-09 35.7 0.0 1.3e-08 35.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|294495955|ref|YP_003542448.1| - 3e-06 27.2 0.0 4.1e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|294495955|ref|YP_003542448.1| - 5.5e-06 25.8 0.0 7.7e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|294495955|ref|YP_003542448.1| - 1.4e-05 24.8 0.0 1.9e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|294495955|ref|YP_003542448.1| - 3.8e-05 22.8 0.0 4.4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Phage_integrase PF00589.17 gi|294495955|ref|YP_003542448.1| - 0.00013 21.6 0.0 0.00015 21.5 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family Methyltransf_32 PF13679.1 gi|294495955|ref|YP_003542448.1| - 0.00068 19.3 0.0 0.0008 19.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|294495955|ref|YP_003542448.1| - 0.00071 18.6 0.0 0.00086 18.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|294495955|ref|YP_003542448.1| - 0.00071 18.7 0.3 0.00093 18.3 0.0 1.4 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.14 gi|294495955|ref|YP_003542448.1| - 0.001 19.1 0.0 0.0021 18.0 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_3 PF01596.12 gi|294495955|ref|YP_003542448.1| - 0.0013 17.8 0.0 0.0015 17.6 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase GCD14 PF08704.5 gi|294495955|ref|YP_003542448.1| - 0.0021 17.6 0.0 0.0026 17.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PrmA PF06325.8 gi|294495955|ref|YP_003542448.1| - 0.0024 17.0 0.0 0.0028 16.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RIO1 PF01163.17 gi|294495955|ref|YP_003542448.1| - 0.0086 15.4 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Met_10 PF02475.11 gi|294495955|ref|YP_003542448.1| - 0.019 14.5 0.0 0.022 14.3 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_16 PF10294.4 gi|294495955|ref|YP_003542448.1| - 0.029 13.8 0.0 0.038 13.4 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase tRNA_U5-meth_tr PF05958.6 gi|294495955|ref|YP_003542448.1| - 0.033 12.8 0.0 0.049 12.3 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase CmcI PF04989.7 gi|294495955|ref|YP_003542448.1| - 0.055 12.7 0.0 0.074 12.3 0.0 1.3 1 0 0 1 1 1 0 Cephalosporin hydroxylase NNMT_PNMT_TEMT PF01234.12 gi|294495955|ref|YP_003542448.1| - 0.12 11.3 0.1 0.61 9.0 0.0 1.8 1 1 1 2 2 2 0 NNMT/PNMT/TEMT family Cytochrome_C554 PF13435.1 gi|294495956|ref|YP_003542449.1| - 1.1e-15 57.7 21.8 3.4e-05 23.9 0.4 5.2 2 1 2 5 5 5 4 Cytochrome c554 and c-prime Cytochrome_C7 PF14522.1 gi|294495956|ref|YP_003542449.1| - 5.7e-14 51.4 24.4 6.3e-05 22.5 3.8 5.4 3 1 2 5 5 5 4 Cytochrome c7 Cytochrom_c3_2 PF14537.1 gi|294495956|ref|YP_003542449.1| - 4.2e-11 43.0 22.1 0.0002 21.6 6.8 5.1 2 1 3 5 5 5 4 Cytochrome c3 Paired_CXXCH_1 PF09699.5 gi|294495956|ref|YP_003542449.1| - 3.3e-08 32.8 25.5 0.026 14.0 0.4 6.5 6 1 0 6 6 6 3 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_CIII PF02085.11 gi|294495956|ref|YP_003542449.1| - 7.3e-05 22.8 18.8 51 4.0 0.0 4.8 3 1 0 3 3 3 0 Class III cytochrome C family Cytochrom_C552 PF02335.10 gi|294495956|ref|YP_003542449.1| - 0.00015 20.5 0.7 0.00015 20.5 0.5 4.5 2 1 2 5 5 5 1 Cytochrome c552 Cytochrom_NNT PF03264.9 gi|294495956|ref|YP_003542449.1| - 0.055 12.9 33.4 0.15 11.5 5.2 5.5 3 1 1 4 4 4 0 NapC/NirT cytochrome c family, N-terminal region Haem_bd PF14376.1 gi|294495956|ref|YP_003542449.1| - 0.065 12.9 0.0 0.065 12.9 0.0 5.7 5 2 2 7 7 7 0 Haem-binding domain NapB PF03892.9 gi|294495956|ref|YP_003542449.1| - 0.23 11.1 19.7 0.6 9.7 1.1 4.9 3 2 1 4 4 4 0 Nitrate reductase cytochrome c-type subunit (NapB) zf-CHY PF05495.7 gi|294495956|ref|YP_003542449.1| - 6 7.1 27.0 11 6.2 2.6 5.2 3 1 1 4 4 4 0 CHY zinc finger DUF4405 PF14358.1 gi|294495957|ref|YP_003542450.1| - 0.00071 19.6 14.8 0.00071 19.6 10.3 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4405) DUF647 PF04884.9 gi|294495957|ref|YP_003542450.1| - 0.0042 16.3 0.6 0.0054 15.9 0.4 1.2 1 0 0 1 1 1 1 Vitamin B6 photo-protection and homoeostasis Polysacc_synt_3 PF13440.1 gi|294495957|ref|YP_003542450.1| - 0.048 13.1 6.0 0.054 12.9 1.3 1.7 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein 7TM_GPCR_Srh PF10318.4 gi|294495957|ref|YP_003542450.1| - 0.072 11.8 5.5 0.08 11.7 3.8 1.0 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srh Ferric_reduct PF01794.14 gi|294495957|ref|YP_003542450.1| - 0.085 12.9 8.9 0.12 12.4 6.2 1.3 1 0 0 1 1 1 0 Ferric reductase like transmembrane component PepSY_TM_1 PF13172.1 gi|294495957|ref|YP_003542450.1| - 0.089 12.5 1.9 0.089 12.5 1.3 2.7 3 1 0 3 3 2 0 PepSY-associated TM helix Ni_hydr_CYTB PF01292.15 gi|294495957|ref|YP_003542450.1| - 0.12 11.7 10.5 0.52 9.6 7.3 1.8 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 COX15-CtaA PF02628.10 gi|294495957|ref|YP_003542450.1| - 0.17 10.7 3.6 0.19 10.5 2.5 1.1 1 0 0 1 1 1 0 Cytochrome oxidase assembly protein Yip1 PF04893.12 gi|294495957|ref|YP_003542450.1| - 0.17 11.3 4.6 0.21 11.0 3.2 1.2 1 0 0 1 1 1 0 Yip1 domain DUF1673 PF07895.6 gi|294495957|ref|YP_003542450.1| - 0.45 10.0 8.9 0.53 9.7 6.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) DUF4131 PF13567.1 gi|294495957|ref|YP_003542450.1| - 0.77 9.1 2.8 0.9 8.9 1.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) zf-DHHC PF01529.15 gi|294495957|ref|YP_003542450.1| - 1.3 8.3 6.1 2 7.8 4.2 1.4 1 1 0 1 1 1 0 DHHC palmitoyltransferase DUF1049 PF06305.6 gi|294495957|ref|YP_003542450.1| - 1.7 8.1 0.0 1.7 8.1 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1049) Cytochrom_B_N PF00033.14 gi|294495957|ref|YP_003542450.1| - 5 6.4 14.8 16 4.7 10.3 1.8 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB DUF4079 PF13301.1 gi|294495957|ref|YP_003542450.1| - 7.5 6.5 9.0 13 5.7 6.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4079) 2-Hacid_dh_C PF02826.14 gi|294495958|ref|YP_003542451.1| - 5.2e-63 211.4 0.0 8.3e-63 210.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|294495958|ref|YP_003542451.1| - 1.3e-25 89.3 0.0 1.5e-25 89.1 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|294495958|ref|YP_003542451.1| - 3.5e-05 23.7 0.1 6.2e-05 22.9 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|294495958|ref|YP_003542451.1| - 0.0016 18.8 0.2 0.0063 16.9 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.16 gi|294495958|ref|YP_003542451.1| - 0.015 15.1 0.1 0.033 14.0 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain YHS PF04945.8 gi|294495959|ref|YP_003542452.1| - 6.9e-13 48.2 0.5 9.5e-13 47.7 0.3 1.2 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.9 gi|294495959|ref|YP_003542452.1| - 0.023 14.3 0.8 0.039 13.6 0.5 1.4 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DUF581 PF04570.9 gi|294495959|ref|YP_003542452.1| - 0.073 12.3 1.7 0.17 11.2 1.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF581) AA_permease_2 PF13520.1 gi|294495960|ref|YP_003542453.1| - 9.2e-34 116.6 58.9 1.5e-33 116.0 40.8 1.3 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|294495960|ref|YP_003542453.1| - 9.4e-17 60.4 61.6 3.2e-15 55.4 42.7 2.1 1 1 0 1 1 1 1 Amino acid permease SIR2_2 PF13289.1 gi|294495961|ref|YP_003542454.1| - 6.5e-10 39.0 0.1 2.6e-09 37.1 0.0 1.9 1 1 0 1 1 1 1 SIR2-like domain Glug PF07581.7 gi|294495963|ref|YP_003542456.1| - 5.9e-30 101.4 120.9 5.8e-05 23.0 1.8 13.8 13 0 0 13 13 13 11 The GLUG motif PKD PF00801.15 gi|294495963|ref|YP_003542456.1| - 3.3e-16 58.7 5.3 3.3e-16 58.7 3.6 2.8 2 0 0 2 2 2 1 PKD domain CarboxypepD_reg PF13620.1 gi|294495963|ref|YP_003542456.1| - 9.6e-12 44.7 0.2 7.9e-11 41.8 0.0 2.8 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|294495963|ref|YP_003542456.1| - 2.3e-08 33.9 1.4 2.2e-07 30.8 0.2 3.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) DUF2012 PF09430.5 gi|294495963|ref|YP_003542456.1| - 0.0011 18.8 0.0 0.0025 17.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2012) EMP24_GP25L PF01105.19 gi|294495963|ref|YP_003542456.1| - 0.011 15.4 0.0 0.025 14.3 0.0 1.6 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Cohesin PF00963.13 gi|294495964|ref|YP_003542457.1| - 7.7e-07 29.0 3.8 7.7e-07 29.0 2.7 2.1 3 0 0 3 3 3 1 Cohesin domain DUF2393 PF09624.5 gi|294495964|ref|YP_003542457.1| - 0.041 13.3 0.6 0.1 12.1 0.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2393) Cas_Cas1 PF01867.11 gi|294495965|ref|YP_003542458.1| - 3.1e-70 236.4 0.0 4.3e-70 235.9 0.0 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas1 BLUF PF04940.7 gi|294495965|ref|YP_003542458.1| - 0.036 13.7 0.0 0.073 12.8 0.0 1.5 1 0 0 1 1 1 0 Sensors of blue-light using FAD HEAT_2 PF13646.1 gi|294495966|ref|YP_003542459.1| - 0.0011 19.2 0.1 0.057 13.6 0.0 2.6 2 1 0 2 2 2 1 HEAT repeats DUF3837 PF12939.2 gi|294495966|ref|YP_003542459.1| - 0.15 12.1 1.9 1.1 9.2 0.0 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3837) HTH_28 PF13518.1 gi|294495967|ref|YP_003542460.1| - 0.0072 16.3 0.0 0.017 15.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_1 PF00126.22 gi|294495967|ref|YP_003542460.1| - 0.011 15.4 0.1 0.54 10.0 0.0 2.4 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.1 gi|294495967|ref|YP_003542460.1| - 0.084 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HNH PF01844.18 gi|294495968|ref|YP_003542461.1| - 0.002 17.9 2.1 0.0049 16.6 1.5 1.8 1 1 0 1 1 1 1 HNH endonuclease zinc_ribbon_5 PF13719.1 gi|294495968|ref|YP_003542461.1| - 0.082 12.5 0.5 0.17 11.5 0.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|294495968|ref|YP_003542461.1| - 0.15 11.7 0.5 0.15 11.7 0.4 1.5 2 0 0 2 2 2 0 zinc-ribbon domain Prominin PF05478.6 gi|294495969|ref|YP_003542462.1| - 0.0028 15.2 3.0 0.0047 14.5 2.1 1.3 1 0 0 1 1 1 1 Prominin PhnA_Zn_Ribbon PF08274.7 gi|294495969|ref|YP_003542462.1| - 0.0079 15.9 0.4 0.07 12.9 0.0 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon DUF445 PF04286.7 gi|294495969|ref|YP_003542462.1| - 0.0095 15.4 3.8 0.011 15.2 2.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF445) Spectrin PF00435.16 gi|294495969|ref|YP_003542462.1| - 0.016 15.4 3.2 0.12 12.7 0.6 2.3 2 0 0 2 2 2 0 Spectrin repeat FYVE PF01363.16 gi|294495969|ref|YP_003542462.1| - 0.03 14.2 0.0 0.04 13.8 0.0 1.3 1 0 0 1 1 1 0 FYVE zinc finger HypA PF01155.14 gi|294495969|ref|YP_003542462.1| - 0.033 13.8 0.4 0.077 12.6 0.3 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family PLC-beta_C PF08703.5 gi|294495969|ref|YP_003542462.1| - 0.051 13.2 10.5 0.22 11.2 7.3 1.8 1 1 0 1 1 1 0 PLC-beta C terminal DUF4226 PF10774.4 gi|294495969|ref|YP_003542462.1| - 0.1 12.6 1.0 0.51 10.4 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4226) DUF948 PF06103.6 gi|294495969|ref|YP_003542462.1| - 0.13 12.1 5.3 0.088 12.6 1.1 2.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF848 PF05852.6 gi|294495969|ref|YP_003542462.1| - 0.14 12.0 6.2 2 8.2 0.2 2.3 2 0 0 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) FlgN PF05130.7 gi|294495969|ref|YP_003542462.1| - 0.15 12.3 4.9 0.41 10.8 3.4 1.8 1 1 0 1 1 1 0 FlgN protein Mo25 PF08569.6 gi|294495969|ref|YP_003542462.1| - 0.17 10.8 4.9 0.34 9.9 3.4 1.4 1 1 0 1 1 1 0 Mo25-like Rep_fac_C PF08542.6 gi|294495969|ref|YP_003542462.1| - 0.18 11.7 1.3 3.5 7.6 0.1 2.5 2 1 0 2 2 2 0 Replication factor C C-terminal domain RRF_GI PF12614.3 gi|294495969|ref|YP_003542462.1| - 0.21 11.4 2.1 0.47 10.2 0.2 2.1 2 0 0 2 2 2 0 Ribosome recycling factor IncA PF04156.9 gi|294495969|ref|YP_003542462.1| - 0.24 10.9 5.6 0.48 9.9 3.9 1.5 1 1 0 1 1 1 0 IncA protein Laminin_II PF06009.7 gi|294495969|ref|YP_003542462.1| - 0.26 11.0 11.5 1.9 8.2 2.3 2.3 2 0 0 2 2 2 0 Laminin Domain II DUF4164 PF13747.1 gi|294495969|ref|YP_003542462.1| - 0.26 11.4 10.5 9.4 6.4 4.9 3.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) zinc_ribbon_6 PF14599.1 gi|294495969|ref|YP_003542462.1| - 0.3 10.9 2.3 0.65 9.8 1.6 1.6 1 0 0 1 1 1 0 Zinc-ribbon Baculo_PEP_C PF04513.7 gi|294495969|ref|YP_003542462.1| - 0.32 10.8 7.9 2.4 8.0 1.1 2.3 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Muted PF14942.1 gi|294495969|ref|YP_003542462.1| - 0.97 9.2 6.8 1.7 8.5 0.8 2.3 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein DUF1515 PF07439.6 gi|294495969|ref|YP_003542462.1| - 1 9.2 3.8 1.2 8.9 0.6 2.5 2 2 2 4 4 3 0 Protein of unknown function (DUF1515) DASH_Dad1 PF08649.5 gi|294495969|ref|YP_003542462.1| - 1.3 8.7 6.2 0.34 10.6 0.5 2.6 2 2 0 2 2 2 0 DASH complex subunit Dad1 HSCB_C PF07743.8 gi|294495969|ref|YP_003542462.1| - 1.4 9.4 4.7 3.8 8.0 0.1 2.8 2 1 1 3 3 3 0 HSCB C-terminal oligomerisation domain Prefoldin_3 PF13758.1 gi|294495969|ref|YP_003542462.1| - 1.9 8.3 8.3 2.3 8.0 0.5 2.6 1 1 2 3 3 3 0 Prefoldin subunit Matrilin_ccoil PF10393.4 gi|294495969|ref|YP_003542462.1| - 2.2 7.7 5.8 0.99 8.8 0.1 2.7 3 0 0 3 3 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Tup_N PF08581.5 gi|294495969|ref|YP_003542462.1| - 3.9 7.7 9.5 8 6.7 0.4 2.7 2 1 1 3 3 2 0 Tup N-terminal Med21 PF11221.3 gi|294495969|ref|YP_003542462.1| - 4.1 7.3 6.9 3.5 7.5 1.3 2.3 2 0 0 2 2 2 0 Subunit 21 of Mediator complex DUF1451 PF07295.6 gi|294495969|ref|YP_003542462.1| - 5 6.8 10.7 0.35 10.6 1.1 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1451) COG5 PF10392.4 gi|294495969|ref|YP_003542462.1| - 6 6.8 7.3 9.9 6.1 1.2 2.5 1 1 0 2 2 2 0 Golgi transport complex subunit 5 SlyX PF04102.7 gi|294495969|ref|YP_003542462.1| - 8.9 6.7 6.5 6.4 7.2 0.7 2.8 2 2 0 2 2 2 0 SlyX KAP_NTPase PF07693.9 gi|294495970|ref|YP_003542463.1| - 5.4e-42 143.9 5.3 9e-42 143.2 3.7 1.4 1 0 0 1 1 1 1 KAP family P-loop domain AAA_16 PF13191.1 gi|294495970|ref|YP_003542463.1| - 1.9e-10 41.0 0.0 1.4e-09 38.1 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|294495970|ref|YP_003542463.1| - 1.6e-07 31.5 2.5 0.032 14.3 1.3 3.0 2 1 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|294495970|ref|YP_003542463.1| - 0.0015 18.2 0.0 0.95 9.1 0.0 2.4 2 0 0 2 2 2 2 NACHT domain NB-ARC PF00931.17 gi|294495970|ref|YP_003542463.1| - 0.0018 17.2 6.7 0.14 10.9 0.0 2.8 3 0 0 3 3 3 2 NB-ARC domain AAA PF00004.24 gi|294495970|ref|YP_003542463.1| - 0.012 15.7 0.4 2.3 8.4 0.2 3.1 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Viral_helicase1 PF01443.13 gi|294495970|ref|YP_003542463.1| - 0.084 12.3 0.0 0.21 11.1 0.0 1.6 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_17 PF13207.1 gi|294495970|ref|YP_003542463.1| - 4.4 8.1 6.4 24 5.7 0.7 3.6 2 1 0 2 2 2 0 AAA domain Oxidored_molyb PF00174.14 gi|294495971|ref|YP_003542464.1| - 8.3e-41 139.2 0.0 1.3e-40 138.5 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain DUF4135 PF13575.1 gi|294495971|ref|YP_003542464.1| - 0.054 12.4 0.2 0.084 11.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4135) SnoaL PF07366.7 gi|294495972|ref|YP_003542465.1| - 2.1e-30 104.9 0.2 2.5e-30 104.6 0.2 1.1 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.2 gi|294495972|ref|YP_003542465.1| - 7.6e-16 58.3 0.2 9.9e-16 58.0 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain Yqai PF09466.5 gi|294495972|ref|YP_003542465.1| - 0.03 14.3 0.1 0.084 12.8 0.0 1.8 1 1 0 1 1 1 0 Hypothetical protein Yqai DUF2358 PF10184.4 gi|294495972|ref|YP_003542465.1| - 0.034 14.0 0.0 0.05 13.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2358) Peptidase_M50 PF02163.17 gi|294495973|ref|YP_003542466.1| - 6.1e-29 100.3 0.0 6.8e-28 96.9 0.0 2.4 2 2 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|294495973|ref|YP_003542466.1| - 4.7e-17 61.6 3.9 8.2e-09 35.2 1.0 2.3 1 1 1 2 2 2 2 PDZ domain PDZ PF00595.19 gi|294495973|ref|YP_003542466.1| - 1.4e-08 34.7 0.6 7.2e-05 22.8 0.0 2.4 2 0 0 2 2 2 2 PDZ domain (Also known as DHR or GLGF) Tricorn_PDZ PF14685.1 gi|294495973|ref|YP_003542466.1| - 2.1e-05 24.2 0.4 0.067 12.9 0.0 2.4 2 0 0 2 2 2 2 Tricorn protease PDZ domain PDZ_1 PF12812.2 gi|294495973|ref|YP_003542466.1| - 0.00074 19.3 0.3 1.6 8.6 0.0 2.4 2 0 0 2 2 2 2 PDZ-like domain TrkA_N PF02254.13 gi|294495974|ref|YP_003542467.1| - 1.6e-24 86.1 1.2 2.3e-24 85.6 0.9 1.2 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|294495974|ref|YP_003542467.1| - 8e-13 47.9 11.1 1.4e-12 47.1 7.7 1.3 1 0 0 1 1 1 1 Ion channel Ion_trans PF00520.26 gi|294495974|ref|YP_003542467.1| - 0.00013 21.2 5.2 0.00021 20.6 3.6 1.3 1 0 0 1 1 1 1 Ion transport protein TrkA_C PF02080.16 gi|294495974|ref|YP_003542467.1| - 0.00056 19.4 0.0 0.0012 18.3 0.0 1.6 1 0 0 1 1 1 1 TrkA-C domain DUF2754 PF10953.3 gi|294495974|ref|YP_003542467.1| - 0.037 14.0 0.7 0.037 14.0 0.5 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2754) ATP-synt_ab PF00006.20 gi|294495974|ref|YP_003542467.1| - 0.094 12.1 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain TrkA_N PF02254.13 gi|294495975|ref|YP_003542468.1| - 1.5e-26 92.6 0.2 2.7e-26 91.8 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|294495975|ref|YP_003542468.1| - 5e-12 45.2 0.3 1.8e-11 43.4 0.1 2.0 2 0 0 2 2 2 1 TrkA-C domain DUF190 PF02641.10 gi|294495975|ref|YP_003542468.1| - 0.00074 19.3 2.2 0.00094 19.0 0.3 2.0 2 0 0 2 2 2 1 Uncharacterized ACR, COG1993 XdhC_C PF13478.1 gi|294495975|ref|YP_003542468.1| - 0.0058 16.9 0.0 0.016 15.4 0.0 1.7 2 0 0 2 2 2 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|294495975|ref|YP_003542468.1| - 0.0066 15.6 0.1 0.025 13.7 0.0 2.0 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|294495975|ref|YP_003542468.1| - 0.027 14.7 0.1 0.056 13.7 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding TauE PF01925.14 gi|294495976|ref|YP_003542469.1| - 2e-39 135.4 35.0 2.4e-39 135.2 24.2 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE ATP-synt_8 PF00895.15 gi|294495976|ref|YP_003542469.1| - 0.24 11.6 0.0 0.24 11.6 0.0 2.8 4 0 0 4 4 4 0 ATP synthase protein 8 CytB6-F_Fe-S PF08802.5 gi|294495976|ref|YP_003542469.1| - 0.43 10.6 3.0 0.8 9.7 0.2 2.7 3 0 0 3 3 3 0 Cytochrome B6-F complex Fe-S subunit B5 PF03484.10 gi|294495977|ref|YP_003542470.1| - 7.5e-18 64.1 1.0 4.2e-17 61.7 0.1 2.6 3 0 0 3 3 3 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|294495977|ref|YP_003542470.1| - 9.1e-15 54.5 0.0 1.8e-14 53.6 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|294495977|ref|YP_003542470.1| - 1.2e-05 24.6 0.9 2.4e-05 23.6 0.1 1.9 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) T2SE PF00437.15 gi|294495978|ref|YP_003542471.1| - 3.5e-50 170.4 0.0 6.4e-50 169.5 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|294495978|ref|YP_003542471.1| - 0.054 13.0 0.1 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SF PF00482.18 gi|294495979|ref|YP_003542472.1| - 5.3e-32 110.3 1.3 6.4e-18 64.8 0.3 4.3 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F Pex24p PF06398.6 gi|294495979|ref|YP_003542472.1| - 0.011 14.5 1.6 0.7 8.6 0.1 2.6 2 0 0 2 2 2 0 Integral peroxisomal membrane peroxin Nse4-Nse3_bdg PF15412.1 gi|294495979|ref|YP_003542472.1| - 0.026 14.3 0.1 0.073 12.9 0.1 1.8 1 0 0 1 1 1 0 Binding domain of Nse4/EID3 to Nse3-MAGE DivIC PF04977.10 gi|294495979|ref|YP_003542472.1| - 0.051 13.0 0.1 0.15 11.5 0.1 1.9 1 0 0 1 1 1 0 Septum formation initiator Myc_target_1 PF15179.1 gi|294495979|ref|YP_003542472.1| - 0.18 11.3 0.8 0.54 9.8 0.6 1.8 1 0 0 1 1 1 0 Myc target protein 1 RNase_HII PF01351.13 gi|294495980|ref|YP_003542473.1| - 1.2e-51 175.1 0.1 1.4e-51 174.9 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII Orthopox_A47 PF06334.6 gi|294495980|ref|YP_003542473.1| - 0.015 14.4 1.3 2.6 7.0 0.0 2.2 1 1 1 2 2 2 0 Orthopoxvirus A47 protein DUF445 PF04286.7 gi|294495980|ref|YP_003542473.1| - 0.06 12.8 0.0 0.078 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF445) GATase_5 PF13507.1 gi|294495981|ref|YP_003542474.1| - 4.8e-49 166.5 0.0 5.6e-49 166.3 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|294495981|ref|YP_003542474.1| - 5.8e-08 32.4 0.0 9.4e-08 31.7 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|294495981|ref|YP_003542474.1| - 6.4e-08 32.1 0.0 7.9e-08 31.8 0.0 1.3 1 1 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|294495981|ref|YP_003542474.1| - 1e-07 31.6 0.0 3e-07 30.1 0.0 1.7 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|294495981|ref|YP_003542474.1| - 1.1e-06 28.0 0.0 1.7e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Putative amidotransferase SNO PF01174.14 gi|294495981|ref|YP_003542474.1| - 0.00071 19.2 0.0 0.0023 17.5 0.0 1.7 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|294495981|ref|YP_003542474.1| - 0.0099 15.3 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase C26 PurS PF02700.9 gi|294495982|ref|YP_003542475.1| - 9.5e-28 95.9 0.1 1.1e-27 95.8 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase ThiS PF02597.15 gi|294495982|ref|YP_003542475.1| - 0.13 12.6 0.0 0.23 11.9 0.0 1.4 1 1 0 1 1 1 0 ThiS family CDP-OH_P_transf PF01066.16 gi|294495983|ref|YP_003542476.1| - 2.6e-19 69.3 4.9 2.6e-19 69.3 3.4 1.7 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Peptidase_M50 PF02163.17 gi|294495983|ref|YP_003542476.1| - 0.1 11.5 0.0 0.15 10.9 0.0 1.3 1 1 0 1 1 1 0 Peptidase family M50 TPR_11 PF13414.1 gi|294495984|ref|YP_003542477.1| - 1.4e-11 43.8 1.0 1.3e-05 24.7 0.1 2.3 1 1 1 2 2 2 2 TPR repeat TPR_1 PF00515.23 gi|294495984|ref|YP_003542477.1| - 1.6e-10 40.0 1.9 6.6e-05 22.3 0.0 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|294495984|ref|YP_003542477.1| - 9.5e-10 37.6 0.2 3.1e-05 23.5 0.0 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|294495984|ref|YP_003542477.1| - 4e-07 29.3 1.5 0.38 10.6 0.4 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|294495984|ref|YP_003542477.1| - 2.3e-05 24.2 0.4 0.0062 16.4 0.0 2.5 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|294495984|ref|YP_003542477.1| - 0.011 16.4 0.0 0.035 14.7 0.0 1.8 2 0 0 2 2 2 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|294495984|ref|YP_003542477.1| - 0.016 15.0 0.7 0.043 13.6 0.1 1.9 2 0 0 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat TPR_9 PF13371.1 gi|294495984|ref|YP_003542477.1| - 0.02 14.7 0.0 0.038 13.8 0.0 1.5 1 1 0 1 1 1 0 Tetratricopeptide repeat SNAP PF14938.1 gi|294495984|ref|YP_003542477.1| - 0.027 13.5 0.5 1.4 7.9 0.0 2.0 1 1 1 2 2 2 0 Soluble NSF attachment protein, SNAP DDT PF02791.12 gi|294495984|ref|YP_003542477.1| - 0.046 13.4 0.0 2.3 8.0 0.0 2.2 2 0 0 2 2 2 0 DDT domain TPR_7 PF13176.1 gi|294495984|ref|YP_003542477.1| - 0.05 13.4 0.4 9.8 6.2 0.0 3.0 2 1 0 2 2 2 0 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|294495984|ref|YP_003542477.1| - 0.053 12.7 0.3 0.054 12.6 0.2 1.1 1 0 0 1 1 1 0 Coatomer epsilon subunit TPR_19 PF14559.1 gi|294495984|ref|YP_003542477.1| - 0.07 13.4 0.1 0.72 10.2 0.0 2.2 2 1 0 2 2 2 0 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|294495984|ref|YP_003542477.1| - 0.075 13.2 0.0 0.11 12.7 0.0 1.3 1 1 0 1 1 1 0 Alkyl sulfatase dimerisation COP23 PF14218.1 gi|294495984|ref|YP_003542477.1| - 0.083 12.4 0.1 0.09 12.3 0.0 1.3 1 1 0 1 1 1 0 Circadian oscillating protein COP23 Apc3 PF12895.2 gi|294495984|ref|YP_003542477.1| - 0.086 12.9 2.5 5.3 7.2 0.2 2.2 1 1 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 MIT PF04212.13 gi|294495984|ref|YP_003542477.1| - 0.11 12.4 2.3 13 5.7 0.1 2.7 2 1 0 2 2 2 0 MIT (microtubule interacting and transport) domain TPR_6 PF13174.1 gi|294495984|ref|YP_003542477.1| - 0.12 12.8 0.0 19 5.9 0.0 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat CPW_WPC PF09717.5 gi|294495984|ref|YP_003542477.1| - 0.52 10.9 3.0 0.71 10.5 0.3 2.0 2 0 0 2 2 2 0 Plasmodium falciparum domain of unknown function (CPW_WPC) TPR_11 PF13414.1 gi|294495985|ref|YP_003542478.1| - 6.7e-13 48.0 0.2 5.1e-12 45.2 0.0 2.2 2 1 1 3 3 3 1 TPR repeat TPR_1 PF00515.23 gi|294495985|ref|YP_003542478.1| - 2e-12 46.1 0.1 1.9e-07 30.3 0.0 3.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|294495985|ref|YP_003542478.1| - 3.8e-10 38.8 0.2 4.8e-07 29.2 0.0 3.6 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_17 PF13431.1 gi|294495985|ref|YP_003542478.1| - 1.6e-07 30.9 0.0 0.00047 20.1 0.0 2.5 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|294495985|ref|YP_003542478.1| - 3.4e-05 23.3 0.1 0.00076 19.0 0.0 2.4 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|294495985|ref|YP_003542478.1| - 3.5e-05 23.2 0.0 0.00096 18.7 0.0 2.2 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|294495985|ref|YP_003542478.1| - 6.2e-05 22.8 0.0 0.00011 22.0 0.0 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|294495985|ref|YP_003542478.1| - 0.001 19.6 0.0 0.0021 18.7 0.0 1.6 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|294495985|ref|YP_003542478.1| - 0.0016 18.9 0.0 0.016 15.8 0.0 2.1 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|294495985|ref|YP_003542478.1| - 0.0022 17.7 0.1 0.011 15.5 0.0 1.8 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|294495985|ref|YP_003542478.1| - 0.0034 17.6 0.0 0.0057 16.9 0.0 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|294495985|ref|YP_003542478.1| - 0.14 12.0 0.0 0.32 10.9 0.0 1.5 2 0 0 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat Aminotran_1_2 PF00155.16 gi|294495987|ref|YP_003542480.1| - 3.7e-58 197.2 0.0 4.2e-58 197.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|294495987|ref|YP_003542480.1| - 3.6e-05 22.2 0.0 6.4e-05 21.4 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|294495987|ref|YP_003542480.1| - 9.9e-05 21.5 0.0 0.00014 21.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|294495987|ref|YP_003542480.1| - 0.0089 14.8 0.0 0.013 14.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V E1-E2_ATPase PF00122.15 gi|294495988|ref|YP_003542481.1| - 3e-72 242.3 3.8 3e-72 242.3 2.7 3.0 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|294495988|ref|YP_003542481.1| - 1e-39 137.1 0.1 3.5e-39 135.4 0.0 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|294495988|ref|YP_003542481.1| - 1.3e-35 122.5 12.7 1.3e-35 122.5 8.8 2.3 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus HAD PF12710.2 gi|294495988|ref|YP_003542481.1| - 1.5e-19 70.9 0.1 7.1e-18 65.4 0.0 3.0 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|294495988|ref|YP_003542481.1| - 1.7e-17 62.6 0.0 6.2e-17 60.8 0.0 2.1 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_like2 PF13246.1 gi|294495988|ref|YP_003542481.1| - 1.5e-15 56.8 0.0 4.2e-15 55.4 0.0 1.8 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|294495988|ref|YP_003542481.1| - 3.6e-09 36.5 0.5 2.7e-05 23.8 0.3 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.16 gi|294495988|ref|YP_003542481.1| - 0.061 13.4 0.1 0.48 10.5 0.0 2.3 2 1 0 2 2 2 0 Radical SAM superfamily HAD_2 PF13419.1 gi|294495988|ref|YP_003542481.1| - 0.099 12.8 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Pyrophosphatase PF00719.14 gi|294495989|ref|YP_003542482.1| - 4.2e-57 191.9 0.1 4.8e-57 191.7 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase OKR_DC_1_N PF03709.10 gi|294495989|ref|YP_003542482.1| - 0.038 14.0 0.1 0.25 11.3 0.1 2.1 1 1 1 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain TruB_N PF01509.13 gi|294495990|ref|YP_003542483.1| - 1.6e-26 93.2 0.0 8.7e-23 81.1 0.0 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|294495990|ref|YP_003542483.1| - 6.3e-19 67.6 0.1 1.2e-18 66.7 0.0 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|294495990|ref|YP_003542483.1| - 1.7e-15 56.4 1.6 2.3e-15 56.0 0.2 1.8 2 0 0 2 2 2 1 PUA domain Asp23 PF03780.8 gi|294495990|ref|YP_003542483.1| - 0.16 12.2 0.2 0.47 10.7 0.0 1.8 2 0 0 2 2 2 0 Asp23 family Cytidylate_kin2 PF13189.1 gi|294495991|ref|YP_003542484.1| - 7.9e-18 64.9 0.4 9.6e-17 61.4 0.3 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|294495991|ref|YP_003542484.1| - 7.5e-13 48.9 0.0 1.2e-12 48.2 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|294495991|ref|YP_003542484.1| - 6.5e-12 46.3 0.1 1.9e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 AAA domain ADK PF00406.17 gi|294495991|ref|YP_003542484.1| - 6.6e-06 26.0 0.1 2.3e-05 24.2 0.0 1.8 1 1 0 2 2 2 1 Adenylate kinase AAA_33 PF13671.1 gi|294495991|ref|YP_003542484.1| - 3.7e-05 23.6 0.0 0.0032 17.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|294495991|ref|YP_003542484.1| - 5.1e-05 22.7 0.1 6.2e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Cytidylate kinase SKI PF01202.17 gi|294495991|ref|YP_003542484.1| - 0.00049 20.0 0.3 0.00096 19.0 0.2 1.5 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.1 gi|294495991|ref|YP_003542484.1| - 0.0094 15.9 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain CoaE PF01121.15 gi|294495991|ref|YP_003542484.1| - 0.037 13.4 0.2 1.6 8.0 0.0 2.1 1 1 1 2 2 2 0 Dephospho-CoA kinase AAA_19 PF13245.1 gi|294495991|ref|YP_003542484.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain DUF106 PF01956.11 gi|294495992|ref|YP_003542485.1| - 2.4e-43 147.5 7.8 3.1e-43 147.1 5.4 1.2 1 0 0 1 1 1 1 Integral membrane protein DUF106 DUF4634 PF15465.1 gi|294495992|ref|YP_003542485.1| - 0.0098 16.0 0.1 0.016 15.4 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4634) 60KD_IMP PF02096.15 gi|294495992|ref|YP_003542485.1| - 0.1 12.2 12.3 0.19 11.3 8.5 1.5 1 1 0 1 1 1 0 60Kd inner membrane protein DUF4446 PF14584.1 gi|294495992|ref|YP_003542485.1| - 0.11 12.3 2.2 0.21 11.3 1.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) Peptidase_M3_N PF08439.5 gi|294495992|ref|YP_003542485.1| - 1.2 9.2 3.9 0.55 10.3 1.0 1.7 2 0 0 2 2 2 0 Oligopeptidase F ADK PF00406.17 gi|294495993|ref|YP_003542486.1| - 2e-59 199.7 0.0 2.5e-59 199.5 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|294495993|ref|YP_003542486.1| - 3.5e-16 58.5 1.8 2e-15 56.1 1.4 1.9 2 0 0 2 2 2 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|294495993|ref|YP_003542486.1| - 1.4e-10 41.9 0.3 2.9e-10 41.0 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|294495993|ref|YP_003542486.1| - 4e-06 26.7 0.0 1.7e-05 24.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|294495993|ref|YP_003542486.1| - 7.5e-05 23.0 0.2 0.00031 21.0 0.0 2.1 2 1 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.12 gi|294495993|ref|YP_003542486.1| - 0.0083 15.5 0.2 0.068 12.5 0.0 2.2 3 0 0 3 3 3 1 Thymidylate kinase AAA_28 PF13521.1 gi|294495993|ref|YP_003542486.1| - 0.044 13.7 0.0 0.077 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|294495993|ref|YP_003542486.1| - 0.045 13.9 0.0 0.11 12.6 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TF_Zn_Ribbon PF08271.7 gi|294495993|ref|YP_003542486.1| - 0.067 12.5 1.6 0.15 11.4 1.1 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding Mg_chelatase PF01078.16 gi|294495993|ref|YP_003542486.1| - 0.073 12.2 0.0 0.16 11.0 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI HSP33 PF01430.14 gi|294495993|ref|YP_003542486.1| - 0.15 11.1 0.0 0.22 10.6 0.0 1.1 1 0 0 1 1 1 0 Hsp33 protein SecY PF00344.15 gi|294495994|ref|YP_003542487.1| - 4.2e-95 318.5 26.2 5e-95 318.3 18.2 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|294495994|ref|YP_003542487.1| - 1.5e-10 40.4 1.0 1.5e-10 40.4 0.7 2.2 2 0 0 2 2 2 1 Plug domain of Sec61p Phage_holin_5 PF06946.6 gi|294495994|ref|YP_003542487.1| - 0.03 14.4 1.5 0.3 11.2 1.1 2.7 1 1 0 1 1 1 0 Phage holin Ribosomal_L18e PF00828.14 gi|294495995|ref|YP_003542488.1| - 1.7e-28 99.5 0.9 2.1e-28 99.2 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L30 PF00327.15 gi|294495996|ref|YP_003542489.1| - 3.1e-18 65.0 0.2 4.8e-18 64.4 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.15 gi|294495997|ref|YP_003542490.1| - 3.3e-26 90.7 1.8 1.1e-25 89.1 1.3 1.8 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|294495997|ref|YP_003542490.1| - 6.7e-25 86.1 0.1 1.1e-24 85.5 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|294495998|ref|YP_003542491.1| - 1.3e-29 102.8 0.0 1.5e-29 102.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L19e PF01280.15 gi|294495999|ref|YP_003542492.1| - 2.6e-58 196.0 7.7 2.8e-58 195.8 5.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e SHOCT PF09851.4 gi|294495999|ref|YP_003542492.1| - 0.092 12.2 0.3 0.26 10.8 0.2 1.9 1 0 0 1 1 1 0 Short C-terminal domain Ribosomal_L32e PF01655.13 gi|294496000|ref|YP_003542493.1| - 8.3e-38 128.8 0.2 1e-37 128.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.18 gi|294496001|ref|YP_003542494.1| - 4.3e-22 78.3 1.6 4.5e-13 49.4 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.14 gi|294496002|ref|YP_003542495.1| - 5.9e-26 90.8 0.0 8.1e-26 90.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|294496003|ref|YP_003542496.1| - 1.2e-20 72.5 5.4 1.4e-20 72.4 3.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-P11 PF03854.9 gi|294496003|ref|YP_003542496.1| - 0.013 14.9 0.6 0.017 14.5 0.4 1.2 1 0 0 1 1 1 0 P-11 zinc finger Ribosomal_L37ae PF01780.14 gi|294496003|ref|YP_003542496.1| - 0.013 15.3 0.8 0.014 15.2 0.5 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family DUF4428 PF14471.1 gi|294496003|ref|YP_003542496.1| - 0.028 14.1 0.1 0.032 13.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) zf-UBR PF02207.15 gi|294496003|ref|YP_003542496.1| - 0.045 13.4 0.4 0.05 13.3 0.3 1.2 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) A2L_zn_ribbon PF08792.5 gi|294496003|ref|YP_003542496.1| - 0.21 11.0 0.9 0.33 10.4 0.6 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|294496003|ref|YP_003542496.1| - 1.5 8.6 6.0 2 8.2 4.1 1.3 1 1 0 1 1 1 0 Transposase zinc-ribbon domain FYVE PF01363.16 gi|294496003|ref|YP_003542496.1| - 2 8.4 4.8 2.8 7.9 3.3 1.3 1 1 0 1 1 1 0 FYVE zinc finger Rsm1 PF08600.5 gi|294496003|ref|YP_003542496.1| - 2.1 8.2 5.5 4.3 7.2 0.3 2.0 1 1 1 2 2 2 0 Rsm1-like DUF2757 PF10955.3 gi|294496003|ref|YP_003542496.1| - 2.1 8.5 7.4 4.2 7.6 0.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2757) zf-C2HC_2 PF13913.1 gi|294496003|ref|YP_003542496.1| - 5.8 6.7 9.0 14 5.5 0.2 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-FPG_IleRS PF06827.9 gi|294496003|ref|YP_003542496.1| - 6 6.6 8.8 1.3e+02 2.3 6.1 2.2 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS Ribosomal_L5_C PF00673.16 gi|294496004|ref|YP_003542497.1| - 1.3e-27 95.4 0.1 2.1e-27 94.6 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|294496004|ref|YP_003542497.1| - 8.6e-14 51.0 0.0 1.6e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.15 gi|294496005|ref|YP_003542498.1| - 2.5e-23 81.5 0.1 4.4e-23 80.7 0.1 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|294496005|ref|YP_003542498.1| - 9.1e-13 47.8 3.8 1.4e-12 47.2 2.6 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|294496005|ref|YP_003542498.1| - 1.7e-08 33.7 1.2 4.3e-08 32.4 0.7 1.9 2 0 0 2 2 2 1 S4 domain KOW PF00467.24 gi|294496005|ref|YP_003542498.1| - 0.00022 20.8 0.3 0.0011 18.6 0.0 2.4 2 0 0 2 2 2 1 KOW motif S4_2 PF13275.1 gi|294496005|ref|YP_003542498.1| - 0.00071 19.1 0.0 0.0016 17.9 0.0 1.7 1 0 0 1 1 1 1 S4 domain KOW PF00467.24 gi|294496006|ref|YP_003542499.1| - 3.8e-05 23.2 0.9 7.5e-05 22.3 0.6 1.5 1 0 0 1 1 1 1 KOW motif Ribosomal_L14 PF00238.14 gi|294496007|ref|YP_003542500.1| - 2.6e-37 127.3 0.1 2.8e-37 127.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|294496008|ref|YP_003542501.1| - 5.1e-29 100.1 2.6 6.3e-29 99.8 1.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|294496009|ref|YP_003542502.1| - 6.2e-28 96.2 0.0 7.1e-28 96.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.18 gi|294496010|ref|YP_003542503.1| - 5.4e-18 64.4 0.8 6.1e-18 64.2 0.6 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein HSBP1 PF06825.7 gi|294496010|ref|YP_003542503.1| - 0.045 13.3 0.8 0.045 13.3 0.5 1.6 2 0 0 2 2 2 0 Heat shock factor binding protein 1 DUF2922 PF11148.3 gi|294496010|ref|YP_003542503.1| - 0.098 12.3 0.0 0.12 12.0 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2922) DsrD PF08679.6 gi|294496010|ref|YP_003542503.1| - 0.098 12.6 0.6 0.17 11.9 0.0 1.6 2 0 0 2 2 2 0 Dissimilatory sulfite reductase D (DsrD) MerR-DNA-bind PF09278.6 gi|294496010|ref|YP_003542503.1| - 0.3 11.5 2.9 6.3 7.2 0.1 2.4 2 1 1 3 3 3 0 MerR, DNA binding SpoOE-like PF09388.5 gi|294496010|ref|YP_003542503.1| - 2.1 7.9 4.6 0.33 10.4 0.4 1.7 2 1 0 2 2 2 0 Spo0E like sporulation regulatory protein UVR PF02151.14 gi|294496010|ref|YP_003542503.1| - 9.2 5.9 12.8 0.61 9.6 0.9 3.1 3 1 1 4 4 4 0 UvrB/uvrC motif KH_2 PF07650.12 gi|294496011|ref|YP_003542504.1| - 3.1e-15 55.4 0.0 6.7e-15 54.4 0.0 1.6 1 0 0 1 1 1 1 KH domain Ribosomal_S3_C PF00189.15 gi|294496011|ref|YP_003542504.1| - 3.7e-15 55.8 0.2 6.2e-15 55.1 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_1 PF00013.24 gi|294496011|ref|YP_003542504.1| - 0.0065 16.1 0.8 0.022 14.4 0.3 2.2 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|294496011|ref|YP_003542504.1| - 0.25 11.0 2.6 0.26 10.9 0.1 2.3 2 0 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.14 gi|294496012|ref|YP_003542505.1| - 3e-34 117.1 0.1 3.4e-34 116.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|294496013|ref|YP_003542506.1| - 1.6e-25 88.5 0.3 2.4e-25 87.9 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.13 gi|294496014|ref|YP_003542507.1| - 5.9e-42 142.5 0.3 1.2e-41 141.5 0.3 1.4 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|294496014|ref|YP_003542507.1| - 2e-13 50.1 0.0 6.8e-13 48.3 0.0 2.0 1 1 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|294496015|ref|YP_003542508.1| - 1.2e-13 50.7 1.5 2.4e-13 49.8 1.1 1.5 1 1 0 1 1 1 1 Ribosomal protein L23 Asp_protease_2 PF13650.1 gi|294496015|ref|YP_003542508.1| - 0.03 14.8 0.0 0.037 14.5 0.0 1.2 1 0 0 1 1 1 0 Aspartyl protease Ribosomal_L4 PF00573.17 gi|294496016|ref|YP_003542509.1| - 2.3e-44 151.1 0.2 2.6e-44 150.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|294496017|ref|YP_003542510.1| - 5.4e-73 245.6 0.2 6.2e-73 245.4 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Methyltransf_15 PF09445.5 gi|294496018|ref|YP_003542511.1| - 3.6e-15 55.8 0.1 3e-14 52.9 0.0 2.1 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.1 gi|294496018|ref|YP_003542511.1| - 4.5e-10 39.3 0.0 7.9e-10 38.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|294496018|ref|YP_003542511.1| - 8.7e-10 38.6 0.0 1.6e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|294496018|ref|YP_003542511.1| - 5.9e-09 36.4 0.0 1.1e-08 35.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|294496018|ref|YP_003542511.1| - 3.1e-08 32.8 0.1 8.4e-08 31.4 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_25 PF13649.1 gi|294496018|ref|YP_003542511.1| - 2.4e-06 27.8 0.0 4.1e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|294496018|ref|YP_003542511.1| - 9.6e-05 21.2 0.0 0.00017 20.4 0.0 1.3 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Met_10 PF02475.11 gi|294496018|ref|YP_003542511.1| - 0.00011 21.8 0.0 0.00024 20.7 0.0 1.6 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_11 PF08241.7 gi|294496018|ref|YP_003542511.1| - 0.00013 22.4 0.0 0.00035 20.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|294496018|ref|YP_003542511.1| - 0.00013 21.3 0.0 0.00024 20.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|294496018|ref|YP_003542511.1| - 0.0013 17.8 0.0 0.002 17.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.7 gi|294496018|ref|YP_003542511.1| - 0.012 16.0 0.0 0.061 13.8 0.0 2.2 1 1 1 2 2 2 0 Methyltransferase domain UPF0020 PF01170.13 gi|294496018|ref|YP_003542511.1| - 0.014 14.9 0.0 0.043 13.3 0.0 1.8 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 FtsJ PF01728.14 gi|294496018|ref|YP_003542511.1| - 0.017 15.1 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase PrmA PF06325.8 gi|294496018|ref|YP_003542511.1| - 0.025 13.7 0.0 0.038 13.0 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|294496018|ref|YP_003542511.1| - 0.032 13.6 0.0 0.061 12.7 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Ubie_methyltran PF01209.13 gi|294496018|ref|YP_003542511.1| - 0.077 12.0 0.0 0.16 11.0 0.0 1.5 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family TrkA_N PF02254.13 gi|294496018|ref|YP_003542511.1| - 0.12 12.3 0.0 0.32 10.9 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain DOT1 PF08123.8 gi|294496018|ref|YP_003542511.1| - 0.12 11.6 0.0 0.26 10.5 0.0 1.5 1 0 0 1 1 1 0 Histone methylation protein DOT1 CmcI PF04989.7 gi|294496018|ref|YP_003542511.1| - 0.13 11.6 0.0 0.24 10.6 0.0 1.4 1 0 0 1 1 1 0 Cephalosporin hydroxylase PCMT PF01135.14 gi|294496018|ref|YP_003542511.1| - 0.16 11.4 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Response_reg PF00072.19 gi|294496019|ref|YP_003542512.1| - 8.9e-26 90.1 0.0 9.9e-26 89.9 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain FleQ PF06490.6 gi|294496019|ref|YP_003542512.1| - 0.0038 17.3 0.0 0.0057 16.8 0.0 1.3 1 1 0 1 1 1 1 Flagellar regulatory protein FleQ HSP20 PF00011.16 gi|294496020|ref|YP_003542513.1| - 8.4e-07 28.7 0.1 1.3e-05 24.9 0.1 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|294496020|ref|YP_003542513.1| - 0.0087 16.5 0.0 0.017 15.6 0.0 1.5 1 0 0 1 1 1 1 CS domain DUF869 PF05911.6 gi|294496021|ref|YP_003542514.1| - 0.039 12.2 0.4 0.04 12.1 0.3 1.0 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) COG6 PF06419.6 gi|294496021|ref|YP_003542514.1| - 0.074 11.1 0.0 0.074 11.1 0.0 1.0 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 DUF1724 PF08350.5 gi|294496022|ref|YP_003542515.1| - 5.4e-18 64.2 0.1 1.1e-17 63.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_11 PF08279.7 gi|294496022|ref|YP_003542515.1| - 0.021 14.4 0.0 0.078 12.6 0.0 1.9 2 0 0 2 2 2 0 HTH domain HTH_27 PF13463.1 gi|294496022|ref|YP_003542515.1| - 0.024 14.9 0.0 0.052 13.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HD_4 PF13328.1 gi|294496023|ref|YP_003542516.1| - 2.1e-19 69.7 0.0 3.3e-19 69.0 0.0 1.3 1 0 0 1 1 1 1 HD domain CbiZ PF01955.13 gi|294496024|ref|YP_003542517.1| - 8.4e-49 165.9 0.0 1.1e-48 165.5 0.0 1.2 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase OMPdecase PF00215.19 gi|294496025|ref|YP_003542518.1| - 3.1e-37 128.1 0.1 3.9e-37 127.8 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|294496025|ref|YP_003542518.1| - 0.0032 16.7 1.3 0.027 13.7 0.1 2.5 2 1 0 3 3 3 1 PcrB family PEP_mutase PF13714.1 gi|294496025|ref|YP_003542518.1| - 0.026 13.7 0.2 5.4 6.1 0.0 2.3 2 1 0 2 2 2 0 Phosphoenolpyruvate phosphomutase Ribul_P_3_epim PF00834.14 gi|294496025|ref|YP_003542518.1| - 0.11 11.5 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family S6PP_C PF08472.5 gi|294496025|ref|YP_003542518.1| - 0.13 11.8 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Sucrose-6-phosphate phosphohydrolase C-terminal AMP-binding PF00501.23 gi|294496026|ref|YP_003542519.1| - 2.6e-101 339.0 0.0 3.2e-101 338.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|294496026|ref|YP_003542519.1| - 1.1e-22 80.7 0.3 2.2e-22 79.7 0.2 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Radical_SAM PF04055.16 gi|294496027|ref|YP_003542520.1| - 1.8e-08 34.7 2.6 2.1e-07 31.2 0.1 2.3 2 1 0 2 2 2 1 Radical SAM superfamily NCD3G PF07562.9 gi|294496027|ref|YP_003542520.1| - 0.068 12.8 1.7 0.15 11.7 1.2 1.5 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR Fer4_14 PF13394.1 gi|294496027|ref|YP_003542520.1| - 0.085 12.8 0.2 0.25 11.3 0.1 1.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain TrmB PF01978.14 gi|294496027|ref|YP_003542520.1| - 0.12 12.1 0.1 0.32 10.7 0.1 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB bZIP_2 PF07716.10 gi|294496028|ref|YP_003542521.1| - 0.032 14.0 3.1 0.046 13.5 2.1 1.2 1 0 0 1 1 1 0 Basic region leucine zipper Myc-LZ PF02344.10 gi|294496028|ref|YP_003542521.1| - 0.076 12.6 1.7 0.11 12.1 1.2 1.3 1 0 0 1 1 1 0 Myc leucine zipper domain Uds1 PF15456.1 gi|294496028|ref|YP_003542521.1| - 0.094 12.7 0.5 0.13 12.2 0.3 1.1 1 0 0 1 1 1 0 Up-regulated During Septation DUF2353 PF09789.4 gi|294496028|ref|YP_003542521.1| - 0.1 11.8 0.2 0.12 11.5 0.2 1.0 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) HALZ PF02183.13 gi|294496028|ref|YP_003542521.1| - 0.68 9.7 3.3 0.98 9.1 2.3 1.2 1 0 0 1 1 1 0 Homeobox associated leucine zipper DUF134 PF02001.11 gi|294496029|ref|YP_003542522.1| - 1.5e-15 56.9 0.0 1.9e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|294496029|ref|YP_003542522.1| - 0.0016 17.8 0.1 0.0023 17.3 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|294496029|ref|YP_003542522.1| - 0.0028 17.2 0.0 0.0049 16.4 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain DNA_ligase_ZBD PF03119.11 gi|294496029|ref|YP_003542522.1| - 0.0039 16.8 4.8 0.16 11.6 0.2 2.5 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain HTH_38 PF13936.1 gi|294496029|ref|YP_003542522.1| - 0.0043 16.5 0.0 0.006 16.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|294496029|ref|YP_003542522.1| - 0.0055 16.8 0.0 0.0095 16.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_psq PF05225.11 gi|294496029|ref|YP_003542522.1| - 0.0075 15.7 0.0 0.026 14.0 0.0 1.8 2 0 0 2 2 2 1 helix-turn-helix, Psq domain HTH_37 PF13744.1 gi|294496029|ref|YP_003542522.1| - 0.0083 15.9 0.1 0.014 15.2 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain zf-C4_Topoisom PF01396.14 gi|294496029|ref|YP_003542522.1| - 0.022 14.2 6.3 0.066 12.7 0.2 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.1 gi|294496029|ref|YP_003542522.1| - 0.027 13.6 8.4 0.06 12.5 5.8 1.6 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|294496029|ref|YP_003542522.1| - 0.029 14.3 7.4 0.075 12.9 5.1 1.8 1 1 1 2 2 2 0 Zinc ribbon domain HTH_28 PF13518.1 gi|294496029|ref|YP_003542522.1| - 0.029 14.3 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|294496029|ref|YP_003542522.1| - 0.054 13.6 0.0 0.087 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|294496029|ref|YP_003542522.1| - 0.065 13.0 0.2 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix UPF0175 PF03683.8 gi|294496029|ref|YP_003542522.1| - 0.084 12.3 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) HTH_AraC PF00165.18 gi|294496029|ref|YP_003542522.1| - 0.089 12.6 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_10 PF04967.7 gi|294496029|ref|YP_003542522.1| - 0.091 12.3 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 HTH DNA binding domain HTH_1 PF00126.22 gi|294496029|ref|YP_003542522.1| - 0.1 12.3 0.1 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family zinc_ribbon_2 PF13240.1 gi|294496029|ref|YP_003542522.1| - 0.15 11.5 6.2 2.4 7.7 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|294496029|ref|YP_003542522.1| - 0.27 11.3 6.7 1.6 8.8 0.1 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS91 PF14319.1 gi|294496029|ref|YP_003542522.1| - 0.56 9.7 5.9 1 8.9 4.1 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-IS66 PF13005.2 gi|294496029|ref|YP_003542522.1| - 1.2 9.1 10.0 3.7 7.6 0.4 2.5 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Ogr_Delta PF04606.7 gi|294496029|ref|YP_003542522.1| - 1.3 8.7 6.2 1.3 8.7 0.3 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger TF_Zn_Ribbon PF08271.7 gi|294496029|ref|YP_003542522.1| - 1.4 8.3 5.7 1.9 7.8 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|294496029|ref|YP_003542522.1| - 1.9 8.2 12.5 3 7.6 1.7 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HypA PF01155.14 gi|294496029|ref|YP_003542522.1| - 6.2 6.5 5.9 5.3 6.7 3.1 1.7 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|294496029|ref|YP_003542522.1| - 8.3 6.3 9.3 9.2 6.1 0.9 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain H_PPase PF03030.11 gi|294496031|ref|YP_003542524.1| - 2.2e-272 905.3 55.9 2.5e-272 905.1 38.8 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase DUF523 PF04463.7 gi|294496032|ref|YP_003542525.1| - 4.2e-15 55.7 0.0 5.5e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF523) Bac_export_2 PF01312.14 gi|294496033|ref|YP_003542526.1| - 1.5 7.5 13.8 3.4 6.4 9.6 1.6 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family ATP_bind_3 PF01171.15 gi|294496034|ref|YP_003542527.1| - 2.4e-14 53.2 0.0 3.8e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|294496034|ref|YP_003542527.1| - 7.7e-07 27.9 0.1 1.4e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|294496034|ref|YP_003542527.1| - 0.00013 20.9 0.0 0.00019 20.4 0.0 1.2 1 0 0 1 1 1 1 NAD synthase PAPS_reduct PF01507.14 gi|294496034|ref|YP_003542527.1| - 0.00025 20.9 0.0 0.00046 20.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|294496034|ref|YP_003542527.1| - 0.002 17.5 0.1 0.0028 17.0 0.0 1.2 1 0 0 1 1 1 1 ATP-binding region ThiI PF02568.9 gi|294496034|ref|YP_003542527.1| - 0.0037 16.7 0.0 0.0054 16.2 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|294496034|ref|YP_003542527.1| - 0.0044 16.5 0.0 0.0067 15.9 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|294496034|ref|YP_003542527.1| - 0.018 14.3 0.0 0.018 14.3 0.0 2.0 2 1 0 2 2 2 0 Queuosine biosynthesis protein QueC RecR PF02132.10 gi|294496034|ref|YP_003542527.1| - 0.11 11.9 9.7 0.18 11.2 4.3 2.6 2 0 0 2 2 2 0 RecR protein TctA PF01970.11 gi|294496035|ref|YP_003542528.1| - 1.9e-84 283.5 34.5 2.1e-84 283.3 23.9 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family DUF4325 PF14213.1 gi|294496035|ref|YP_003542528.1| - 0.041 13.5 0.3 0.09 12.4 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4325) Tmemb_cc2 PF10267.4 gi|294496035|ref|YP_003542528.1| - 1.2 7.6 2.9 1.8 7.0 2.0 1.3 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein CbiA PF01656.18 gi|294496036|ref|YP_003542529.1| - 8.1e-32 110.2 0.1 1.1e-31 109.8 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|294496036|ref|YP_003542529.1| - 2.4e-11 43.2 0.0 3.3e-10 39.4 0.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|294496036|ref|YP_003542529.1| - 7.8e-07 28.9 0.9 3e-05 23.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|294496036|ref|YP_003542529.1| - 5.1e-06 25.8 0.0 0.00017 20.8 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|294496036|ref|YP_003542529.1| - 7.7e-05 22.6 0.0 0.00046 20.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|294496036|ref|YP_003542529.1| - 0.00081 20.1 0.0 0.002 18.9 0.0 1.8 2 0 0 2 2 1 1 AAA domain NTPase_1 PF03266.10 gi|294496036|ref|YP_003542529.1| - 0.00084 19.0 0.2 0.0018 18.0 0.1 1.5 1 0 0 1 1 1 1 NTPase AAA_18 PF13238.1 gi|294496036|ref|YP_003542529.1| - 0.00086 19.6 0.0 0.0015 18.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|294496036|ref|YP_003542529.1| - 0.001 19.0 0.0 0.0018 18.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain MobB PF03205.9 gi|294496036|ref|YP_003542529.1| - 0.0016 18.1 0.0 0.004 16.8 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B YhjQ PF06564.7 gi|294496036|ref|YP_003542529.1| - 0.0032 16.8 0.0 0.0086 15.4 0.0 1.8 1 1 0 1 1 1 1 YhjQ protein AAA_10 PF12846.2 gi|294496036|ref|YP_003542529.1| - 0.0078 15.6 0.0 0.014 14.8 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain APS_kinase PF01583.15 gi|294496036|ref|YP_003542529.1| - 0.012 15.3 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase ABC_tran PF00005.22 gi|294496036|ref|YP_003542529.1| - 0.014 15.7 0.0 0.031 14.5 0.0 1.8 1 1 0 1 1 1 0 ABC transporter MipZ PF09140.6 gi|294496036|ref|YP_003542529.1| - 0.014 14.4 0.1 0.035 13.1 0.1 1.6 1 0 0 1 1 1 0 ATPase MipZ ATP-synt_ab PF00006.20 gi|294496036|ref|YP_003542529.1| - 0.018 14.5 0.2 0.035 13.5 0.1 1.6 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain SRP54 PF00448.17 gi|294496036|ref|YP_003542529.1| - 0.019 14.3 0.1 0.034 13.5 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain CTP_synth_N PF06418.9 gi|294496036|ref|YP_003542529.1| - 0.021 13.9 0.3 0.054 12.5 0.1 1.7 2 0 0 2 2 2 0 CTP synthase N-terminus ArgK PF03308.11 gi|294496036|ref|YP_003542529.1| - 0.024 13.4 0.7 0.036 12.8 0.1 1.6 2 0 0 2 2 2 0 ArgK protein AAA_24 PF13479.1 gi|294496036|ref|YP_003542529.1| - 0.027 14.0 0.1 0.083 12.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|294496036|ref|YP_003542529.1| - 0.03 13.9 0.1 0.057 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|294496036|ref|YP_003542529.1| - 0.051 13.3 0.4 0.12 12.1 0.3 1.5 1 0 0 1 1 1 0 Part of AAA domain NB-ARC PF00931.17 gi|294496036|ref|YP_003542529.1| - 0.06 12.2 0.4 0.093 11.5 0.3 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF87 PF01935.12 gi|294496036|ref|YP_003542529.1| - 0.061 13.1 1.4 0.11 12.3 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function DUF87 3HCDH_N PF02737.13 gi|294496036|ref|YP_003542529.1| - 0.099 12.2 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NACHT PF05729.7 gi|294496036|ref|YP_003542529.1| - 0.14 11.8 0.2 0.33 10.5 0.1 1.6 2 0 0 2 2 1 0 NACHT domain KTI12 PF08433.5 gi|294496036|ref|YP_003542529.1| - 0.14 11.3 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_29 PF13555.1 gi|294496036|ref|YP_003542529.1| - 0.18 11.3 0.3 0.35 10.4 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Cation_efflux PF01545.16 gi|294496037|ref|YP_003542530.1| - 1e-63 215.1 2.5 1.1e-63 214.9 1.7 1.0 1 0 0 1 1 1 1 Cation efflux family TctB PF07331.6 gi|294496037|ref|YP_003542530.1| - 0.1 12.2 1.2 0.72 9.5 0.7 2.0 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF3593 PF12159.3 gi|294496037|ref|YP_003542530.1| - 0.22 11.3 2.8 1.3 8.8 1.9 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3593) DUF1980 PF09323.5 gi|294496037|ref|YP_003542530.1| - 0.31 10.7 3.1 1.5 8.5 0.9 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF1980) Chorismate_synt PF01264.16 gi|294496038|ref|YP_003542531.1| - 1.7e-149 497.0 2.4 1.9e-149 496.8 1.7 1.0 1 0 0 1 1 1 1 Chorismate synthase Aminotran_1_2 PF00155.16 gi|294496039|ref|YP_003542532.1| - 1.6e-62 211.6 0.0 1.8e-62 211.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|294496039|ref|YP_003542532.1| - 0.0092 14.3 0.0 0.013 13.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme AAL_decarboxy PF03306.8 gi|294496040|ref|YP_003542533.1| - 9.5e-80 266.7 0.0 1.3e-79 266.3 0.0 1.1 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase Internalin_N PF12354.3 gi|294496040|ref|YP_003542533.1| - 0.1 12.2 0.1 0.19 11.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial adhesion/invasion protein N terminal TroA PF01297.12 gi|294496041|ref|YP_003542534.1| - 1.1e-73 247.5 0.4 1.3e-73 247.4 0.3 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family Brevenin PF03032.10 gi|294496041|ref|YP_003542534.1| - 0.084 12.7 0.0 0.23 11.3 0.0 1.7 1 0 0 1 1 1 0 Brevenin/esculentin/gaegurin/rugosin family ABC_tran PF00005.22 gi|294496042|ref|YP_003542535.1| - 5.9e-32 110.8 0.0 9.2e-32 110.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|294496042|ref|YP_003542535.1| - 1.6e-18 67.6 0.4 4.1e-15 56.4 0.3 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|294496042|ref|YP_003542535.1| - 4.4e-08 32.6 0.1 1.2e-07 31.2 0.1 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|294496042|ref|YP_003542535.1| - 1.3e-07 31.0 0.1 0.00017 20.7 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain Arch_ATPase PF01637.13 gi|294496042|ref|YP_003542535.1| - 0.00038 20.2 0.8 0.098 12.3 0.0 2.2 2 0 0 2 2 2 2 Archaeal ATPase AAA_10 PF12846.2 gi|294496042|ref|YP_003542535.1| - 0.0011 18.5 0.4 0.017 14.5 0.1 2.0 1 1 1 2 2 2 1 AAA-like domain AAA PF00004.24 gi|294496042|ref|YP_003542535.1| - 0.0021 18.2 0.3 0.48 10.6 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|294496042|ref|YP_003542535.1| - 0.0024 17.3 0.0 0.0046 16.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|294496042|ref|YP_003542535.1| - 0.004 16.3 0.0 0.064 12.4 0.0 2.3 1 1 1 2 2 2 1 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|294496042|ref|YP_003542535.1| - 0.0057 16.5 0.1 0.11 12.3 0.1 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|294496042|ref|YP_003542535.1| - 0.0072 16.6 1.6 0.013 15.8 1.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|294496042|ref|YP_003542535.1| - 0.012 15.7 0.6 0.23 11.6 0.4 2.4 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|294496042|ref|YP_003542535.1| - 0.023 14.5 0.3 5.9 6.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|294496042|ref|YP_003542535.1| - 0.028 14.3 1.0 0.88 9.5 0.7 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|294496042|ref|YP_003542535.1| - 0.043 13.8 0.1 0.14 12.1 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.17 gi|294496042|ref|YP_003542535.1| - 0.081 11.7 0.8 1.4 7.7 0.1 2.5 2 1 1 3 3 3 0 NB-ARC domain AAA_25 PF13481.1 gi|294496042|ref|YP_003542535.1| - 0.09 12.1 0.0 0.47 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF1355 PF07090.6 gi|294496042|ref|YP_003542535.1| - 0.11 11.7 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1355) ABC_ATPase PF09818.4 gi|294496042|ref|YP_003542535.1| - 0.14 10.7 0.2 4.6 5.7 0.0 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class ABC-3 PF00950.12 gi|294496043|ref|YP_003542536.1| - 1.2e-82 277.0 26.5 1.4e-82 276.8 18.4 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|294496043|ref|YP_003542536.1| - 4.9e-10 38.7 24.3 7.9e-10 38.0 16.8 1.4 1 1 0 1 1 1 1 FecCD transport family Ninjurin PF04923.7 gi|294496043|ref|YP_003542536.1| - 2.3 7.9 8.1 0.19 11.4 1.5 2.1 2 0 0 2 2 2 0 Ninjurin DUF2427 PF10348.4 gi|294496043|ref|YP_003542536.1| - 7.9 6.1 11.8 0.14 11.7 0.2 3.3 2 2 0 2 2 2 0 Domain of unknown function (DUF2427) PAS_3 PF08447.6 gi|294496044|ref|YP_003542537.1| - 1.1e-21 76.6 0.1 4.6e-18 65.1 0.0 2.8 3 1 0 3 3 3 2 PAS fold PAS PF00989.19 gi|294496044|ref|YP_003542537.1| - 1.2e-20 73.3 0.0 2e-08 33.9 0.0 3.4 3 1 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|294496044|ref|YP_003542537.1| - 6.4e-20 71.4 0.1 2.2e-07 31.1 0.0 3.2 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|294496044|ref|YP_003542537.1| - 2.1e-14 53.4 0.0 4.5e-05 23.4 0.0 3.2 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|294496044|ref|YP_003542537.1| - 6.7e-07 28.9 0.0 0.00027 20.6 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_10 PF13596.1 gi|294496044|ref|YP_003542537.1| - 0.00089 19.4 0.0 0.048 13.9 0.0 2.7 3 0 0 3 3 3 1 PAS domain PAS_7 PF12860.2 gi|294496044|ref|YP_003542537.1| - 0.011 15.7 0.0 4.1 7.4 0.0 3.1 3 1 0 3 3 3 0 PAS fold HATPase_c PF02518.21 gi|294496045|ref|YP_003542538.1| - 7.3e-33 112.5 0.2 1.9e-32 111.3 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|294496045|ref|YP_003542538.1| - 1.6e-28 99.0 0.2 7.4e-16 58.4 0.1 3.4 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|294496045|ref|YP_003542538.1| - 1.2e-23 82.9 0.0 4.5e-12 45.7 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|294496045|ref|YP_003542538.1| - 9.5e-21 73.8 0.0 3.8e-09 36.5 0.0 3.4 3 0 0 3 3 3 2 PAS fold HisKA PF00512.20 gi|294496045|ref|YP_003542538.1| - 2.8e-19 68.8 0.1 2.8e-19 68.8 0.1 2.8 3 0 0 3 3 2 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|294496045|ref|YP_003542538.1| - 2e-16 60.8 0.0 4e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.1 gi|294496045|ref|YP_003542538.1| - 1.9e-15 56.0 0.0 6.2e-08 32.2 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_10 PF13596.1 gi|294496045|ref|YP_003542538.1| - 8.5e-06 25.9 0.3 6.1e-05 23.2 0.0 2.6 3 0 0 3 3 3 1 PAS domain HATPase_c_3 PF13589.1 gi|294496045|ref|YP_003542538.1| - 1.2e-05 24.9 0.2 3.3e-05 23.5 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|294496045|ref|YP_003542538.1| - 8.9e-05 22.5 0.0 0.015 15.3 0.0 3.2 3 0 0 3 3 3 1 PAS fold PAS_7 PF12860.2 gi|294496045|ref|YP_003542538.1| - 9e-05 22.4 0.9 1.2 9.1 0.0 4.2 3 1 0 3 3 3 2 PAS fold HATPase_c_5 PF14501.1 gi|294496045|ref|YP_003542538.1| - 0.00019 21.0 0.2 0.00071 19.2 0.2 2.0 1 0 0 1 1 1 1 GHKL domain bPH_5 PF10882.3 gi|294496045|ref|YP_003542538.1| - 0.037 13.8 3.5 15 5.4 0.1 3.9 4 0 0 4 4 4 0 Bacterial PH domain DUF4375 PF14300.1 gi|294496045|ref|YP_003542538.1| - 0.064 13.2 1.1 0.26 11.2 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4375) GAF_3 PF13492.1 gi|294496045|ref|YP_003542538.1| - 0.066 13.3 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 GAF domain IncA PF04156.9 gi|294496045|ref|YP_003542538.1| - 2.7 7.5 6.3 6.7 6.2 4.4 1.7 1 0 0 1 1 1 0 IncA protein Lyase_1 PF00206.15 gi|294496046|ref|YP_003542539.1| - 4.2e-62 210.1 0.0 6.1e-62 209.6 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|294496046|ref|YP_003542539.1| - 2.5e-12 46.6 0.5 2e-11 43.7 0.0 2.8 3 0 0 3 3 3 1 Argininosuccinate lyase C-terminal Asparaginase PF00710.15 gi|294496047|ref|YP_003542540.1| - 6e-90 301.2 0.4 7.1e-90 301.0 0.3 1.0 1 0 0 1 1 1 1 Asparaginase Peripla_BP_4 PF13407.1 gi|294496047|ref|YP_003542540.1| - 0.0026 17.1 0.2 0.95 8.7 0.0 2.3 2 0 0 2 2 2 2 Periplasmic binding protein domain BCCT PF02028.12 gi|294496048|ref|YP_003542541.1| - 5.4e-180 598.7 46.6 6.1e-180 598.5 32.3 1.0 1 0 0 1 1 1 1 BCCT family transporter MtmB PF05369.7 gi|294496049|ref|YP_003542542.1| - 3.3e-71 239.8 1.9 4e-71 239.5 1.3 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB CTP_transf_1 PF01148.15 gi|294496050|ref|YP_003542543.1| - 3.4e-12 46.5 15.5 6.6e-12 45.6 3.9 2.0 1 1 1 2 2 2 2 Cytidylyltransferase family DUF1628 PF07790.6 gi|294496051|ref|YP_003542544.1| - 1.8e-26 92.6 1.4 3.4e-26 91.7 1.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF1312 PF07009.6 gi|294496051|ref|YP_003542544.1| - 0.028 14.2 0.0 3.7 7.3 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1312) DUF4402 PF14352.1 gi|294496051|ref|YP_003542544.1| - 0.056 13.9 0.2 0.073 13.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4402) Gp5_C PF06715.7 gi|294496051|ref|YP_003542544.1| - 0.12 12.2 0.2 0.34 10.9 0.1 1.7 1 0 0 1 1 1 0 Gp5 C-terminal repeat (3 copies) RHH_1 PF01402.16 gi|294496052|ref|YP_003542545.1| - 0.024 14.5 0.0 0.048 13.5 0.0 1.4 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Staphylokinase PF02821.11 gi|294496052|ref|YP_003542545.1| - 0.06 13.1 0.6 0.091 12.5 0.2 1.6 1 1 0 1 1 1 0 Staphylokinase/Streptokinase family DDE_Tnp_1 PF01609.16 gi|294496053|ref|YP_003542546.1| - 1.6e-15 57.2 3.6 2.6e-15 56.5 2.5 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|294496053|ref|YP_003542546.1| - 3.9e-05 23.7 3.5 4.1e-05 23.6 1.4 1.9 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|294496053|ref|YP_003542546.1| - 0.00075 19.1 0.5 0.0012 18.4 0.4 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|294496053|ref|YP_003542546.1| - 0.021 14.5 0.8 0.041 13.6 0.6 1.5 1 0 0 1 1 1 0 Transposase DDE domain DUF772 PF05598.6 gi|294496053|ref|YP_003542546.1| - 0.03 14.2 0.1 0.084 12.7 0.1 1.7 1 0 0 1 1 1 0 Transposase domain (DUF772) DUF1297 PF06973.7 gi|294496054|ref|YP_003542547.1| - 2.7e-78 261.6 0.0 3.6e-78 261.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|294496054|ref|YP_003542547.1| - 7.9e-44 148.3 0.0 1.2e-43 147.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|294496054|ref|YP_003542547.1| - 0.09 12.5 0.0 5.4 6.6 0.0 2.3 1 1 0 2 2 2 0 ATP-grasp domain DUF95 PF01944.12 gi|294496055|ref|YP_003542548.1| - 5.6e-35 120.5 18.5 6.6e-35 120.2 12.8 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 DUF63 PF01889.12 gi|294496056|ref|YP_003542549.1| - 2.5e-105 352.4 15.3 2.8e-105 352.3 10.6 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Fe-ADH_2 PF13685.1 gi|294496057|ref|YP_003542550.1| - 1.8e-71 240.3 5.4 2.4e-71 240.0 3.7 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|294496057|ref|YP_003542550.1| - 7.5e-28 97.2 7.1 1.4e-27 96.3 4.9 1.4 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|294496057|ref|YP_003542550.1| - 4.9e-09 35.5 0.7 1.4e-08 33.9 0.4 1.9 1 1 1 2 2 2 1 3-dehydroquinate synthase UPF0179 PF03684.8 gi|294496058|ref|YP_003542551.1| - 3.5e-48 162.8 3.5 3.8e-48 162.6 2.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|294496058|ref|YP_003542551.1| - 0.0018 18.2 1.2 0.0029 17.6 0.8 1.6 1 1 0 1 1 1 1 Transposase DDE domain DUF2150 PF09920.4 gi|294496059|ref|YP_003542552.1| - 6.5e-69 231.3 5.0 7.4e-69 231.1 3.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) CbiX PF01903.12 gi|294496060|ref|YP_003542553.1| - 6.9e-31 106.4 0.0 7.9e-31 106.3 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|294496060|ref|YP_003542553.1| - 2.2e-06 26.9 0.0 2.8e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|294496060|ref|YP_003542553.1| - 0.0048 15.9 0.0 0.0048 15.9 0.0 1.1 1 0 0 1 1 1 1 Ferrochelatase Mur_ligase_M PF08245.7 gi|294496061|ref|YP_003542554.1| - 1.9e-05 24.7 1.4 4.4e-05 23.6 1.0 1.6 1 1 0 1 1 1 1 Mur ligase middle domain TrkA_N PF02254.13 gi|294496061|ref|YP_003542554.1| - 0.047 13.6 1.7 0.17 11.8 0.1 2.5 2 1 0 2 2 2 0 TrkA-N domain HEM4 PF02602.10 gi|294496061|ref|YP_003542554.1| - 0.1 11.8 0.0 0.36 10.0 0.0 1.8 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD Oxidored_nitro PF00148.14 gi|294496062|ref|YP_003542555.1| - 2.1e-19 69.4 0.1 7.5e-19 67.6 0.0 1.7 1 1 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase DUF2373 PF10180.4 gi|294496062|ref|YP_003542555.1| - 0.1 12.1 0.4 0.22 11.1 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2373) GvpG PF05120.7 gi|294496062|ref|YP_003542555.1| - 0.12 12.2 0.2 0.26 11.1 0.1 1.7 1 0 0 1 1 1 0 Gas vesicle protein G Fer4_NifH PF00142.13 gi|294496063|ref|YP_003542556.1| - 5e-88 294.8 2.5 5.7e-88 294.6 1.7 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|294496063|ref|YP_003542556.1| - 4.7e-13 48.9 0.0 6.5e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|294496063|ref|YP_003542556.1| - 8e-07 28.3 1.1 2.7e-06 26.6 0.2 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|294496063|ref|YP_003542556.1| - 1.3e-05 25.1 0.0 3.3e-05 23.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|294496063|ref|YP_003542556.1| - 0.00047 19.0 0.1 0.00081 18.2 0.1 1.3 1 0 0 1 1 1 1 ArgK protein AAA_10 PF12846.2 gi|294496063|ref|YP_003542556.1| - 0.00076 19.0 0.0 0.0011 18.4 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain MipZ PF09140.6 gi|294496063|ref|YP_003542556.1| - 0.0018 17.4 0.1 0.031 13.3 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ CPSase_L_chain PF00289.17 gi|294496063|ref|YP_003542556.1| - 0.0037 17.3 0.2 0.52 10.4 0.0 2.4 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain SRP54 PF00448.17 gi|294496063|ref|YP_003542556.1| - 0.0063 15.9 0.2 0.016 14.6 0.0 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|294496063|ref|YP_003542556.1| - 0.0099 15.2 0.1 0.021 14.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|294496063|ref|YP_003542556.1| - 0.022 14.4 0.3 0.047 13.3 0.0 1.9 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|294496063|ref|YP_003542556.1| - 0.044 13.3 0.2 1.5 8.3 0.1 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.1 gi|294496063|ref|YP_003542556.1| - 0.044 13.3 0.0 0.082 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|294496063|ref|YP_003542556.1| - 0.06 12.1 0.0 0.094 11.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.1 gi|294496063|ref|YP_003542556.1| - 0.093 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|294496063|ref|YP_003542556.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain GATase_3 PF07685.9 gi|294496064|ref|YP_003542557.1| - 4.6e-33 114.0 0.4 7.1e-33 113.4 0.3 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|294496064|ref|YP_003542557.1| - 2.9e-25 88.8 0.0 5e-25 88.0 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|294496064|ref|YP_003542557.1| - 4.8e-17 62.2 0.3 4.7e-15 55.7 0.2 2.2 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|294496064|ref|YP_003542557.1| - 0.1 12.3 0.0 0.33 10.6 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Peptidase_S51 PF03575.12 gi|294496064|ref|YP_003542557.1| - 0.1 12.3 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Peptidase family S51 tRNA_int_endo PF01974.12 gi|294496065|ref|YP_003542558.1| - 3.5e-45 151.7 2.3 6e-23 80.4 0.2 2.2 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|294496065|ref|YP_003542558.1| - 2e-37 126.5 2.0 5e-19 67.6 0.0 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.5 gi|294496065|ref|YP_003542558.1| - 0.024 14.8 0.0 0.052 13.7 0.0 1.6 1 0 0 1 1 1 0 Sen15 protein UPF0118 PF01594.11 gi|294496066|ref|YP_003542559.1| - 3e-37 128.3 47.6 3.4e-37 128.1 33.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 PHP_C PF13263.1 gi|294496067|ref|YP_003542560.1| - 8e-19 66.8 0.0 2.3e-18 65.4 0.0 1.8 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|294496067|ref|YP_003542560.1| - 8.5e-13 48.4 0.0 9.9e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 PHP domain MMR_HSR1 PF01926.18 gi|294496068|ref|YP_003542561.1| - 7.9e-21 74.1 0.0 1.6e-20 73.2 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|294496068|ref|YP_003542561.1| - 8.7e-12 45.0 0.0 1.7e-11 44.1 0.0 1.5 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.13 gi|294496068|ref|YP_003542561.1| - 1.3e-06 27.8 0.1 3.1e-06 26.5 0.1 1.7 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|294496068|ref|YP_003542561.1| - 1.1e-05 24.9 0.0 0.002 17.5 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain cobW PF02492.14 gi|294496068|ref|YP_003542561.1| - 0.0035 16.8 0.0 0.13 11.7 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.4 gi|294496068|ref|YP_003542561.1| - 0.0037 16.7 0.1 1.1 8.7 0.0 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation Dynamin_N PF00350.18 gi|294496068|ref|YP_003542561.1| - 0.021 14.6 0.1 0.23 11.2 0.0 2.3 1 1 0 2 2 2 0 Dynamin family AAA_23 PF13476.1 gi|294496068|ref|YP_003542561.1| - 0.066 13.5 0.3 2.5 8.3 0.0 2.3 1 1 1 2 2 2 0 AAA domain DUF2209 PF09974.4 gi|294496069|ref|YP_003542562.1| - 5e-44 149.4 0.0 5.6e-44 149.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) DUF4114 PF13448.1 gi|294496070|ref|YP_003542563.1| - 0.34 11.7 5.5 19 6.1 0.2 3.6 2 1 2 4 4 4 0 Domain of unknown function (DUF4114) Prismane PF03063.15 gi|294496071|ref|YP_003542564.1| - 1e-163 545.4 0.0 1.1e-163 545.3 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family TM2 PF05154.11 gi|294496072|ref|YP_003542565.1| - 1e-08 35.2 6.6 1.9e-08 34.3 4.6 1.5 1 1 0 1 1 1 1 TM2 domain DUF3671 PF12420.3 gi|294496072|ref|YP_003542565.1| - 0.021 14.7 5.3 0.029 14.3 3.6 1.2 1 0 0 1 1 1 0 Protein of unknown function V_ATPase_I PF01496.14 gi|294496072|ref|YP_003542565.1| - 0.061 11.1 2.5 0.058 11.2 1.8 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF2207 PF09972.4 gi|294496072|ref|YP_003542565.1| - 0.1 11.1 2.3 0.11 11.0 1.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Tenui_PVC2 PF06656.6 gi|294496072|ref|YP_003542565.1| - 0.34 8.6 3.2 0.37 8.5 2.2 1.0 1 0 0 1 1 1 0 Tenuivirus PVC2 protein Pox_A14 PF05767.7 gi|294496072|ref|YP_003542565.1| - 0.36 10.8 3.4 0.51 10.3 2.4 1.4 1 1 0 1 1 1 0 Poxvirus virion envelope protein A14 POTRA_2 PF08479.6 gi|294496073|ref|YP_003542566.1| - 0.048 13.3 0.0 0.055 13.1 0.0 1.1 1 0 0 1 1 1 0 POTRA domain, ShlB-type Rhodanese PF00581.15 gi|294496074|ref|YP_003542567.1| - 6.3e-18 65.1 0.0 7.6e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain DUF442 PF04273.8 gi|294496074|ref|YP_003542567.1| - 0.022 14.5 0.0 0.031 14.1 0.0 1.3 1 0 0 1 1 1 0 Putative phosphatase (DUF442) Pyr_redox_2 PF07992.9 gi|294496075|ref|YP_003542568.1| - 8.3e-15 55.1 0.0 8.8e-07 28.9 0.0 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|294496075|ref|YP_003542568.1| - 1.1e-14 54.1 0.6 2e-06 26.9 0.1 3.1 3 0 0 3 3 3 2 FAD binding domain GIDA PF01134.17 gi|294496075|ref|YP_003542568.1| - 3.5e-13 49.1 0.4 5.9e-05 22.1 0.0 3.2 3 0 0 3 3 3 3 Glucose inhibited division protein A DAO PF01266.19 gi|294496075|ref|YP_003542568.1| - 1.3e-12 47.3 0.3 2.3e-05 23.4 0.1 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|294496075|ref|YP_003542568.1| - 4.3e-11 41.9 0.0 8.6e-08 31.0 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|294496075|ref|YP_003542568.1| - 1.6e-07 31.2 0.1 1.4e-05 25.0 0.1 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|294496075|ref|YP_003542568.1| - 3.3e-07 29.6 0.0 5.3e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|294496075|ref|YP_003542568.1| - 9.1e-06 24.9 0.4 4.9e-05 22.5 0.1 2.1 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.7 gi|294496075|ref|YP_003542568.1| - 3.3e-05 22.9 0.0 8.6e-05 21.6 0.0 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|294496075|ref|YP_003542568.1| - 0.00021 21.6 0.1 0.41 11.0 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|294496075|ref|YP_003542568.1| - 0.00036 20.6 0.0 0.0009 19.3 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|294496075|ref|YP_003542568.1| - 0.0039 16.3 0.2 0.039 13.0 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|294496075|ref|YP_003542568.1| - 0.0091 15.7 0.0 0.021 14.5 0.0 1.6 2 0 0 2 2 2 1 FAD-NAD(P)-binding TrkA_N PF02254.13 gi|294496075|ref|YP_003542568.1| - 0.054 13.5 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain GDI PF00996.13 gi|294496075|ref|YP_003542568.1| - 0.1 10.9 0.0 0.2 9.9 0.0 1.4 1 0 0 1 1 1 0 GDP dissociation inhibitor EAP30 PF04157.11 gi|294496075|ref|YP_003542568.1| - 0.16 11.0 0.0 0.27 10.3 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family HxlR PF01638.12 gi|294496076|ref|YP_003542569.1| - 2.1e-22 78.5 0.1 2.7e-22 78.2 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix DUF505 PF04458.7 gi|294496076|ref|YP_003542569.1| - 0.0002 19.6 0.1 0.00024 19.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) DUF2513 PF10711.4 gi|294496076|ref|YP_003542569.1| - 0.00096 19.1 0.0 0.0012 18.8 0.0 1.1 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) PadR PF03551.9 gi|294496076|ref|YP_003542569.1| - 0.0017 18.0 0.0 0.0025 17.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4423 PF14394.1 gi|294496076|ref|YP_003542569.1| - 0.0036 16.8 0.0 0.0046 16.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_20 PF12840.2 gi|294496076|ref|YP_003542569.1| - 0.017 14.9 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|294496076|ref|YP_003542569.1| - 0.029 14.4 0.0 0.04 13.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF829 PF05705.9 gi|294496076|ref|YP_003542569.1| - 0.029 14.0 0.0 0.032 13.9 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF829) MarR_2 PF12802.2 gi|294496076|ref|YP_003542569.1| - 0.04 13.6 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF438 PF04282.8 gi|294496076|ref|YP_003542569.1| - 0.044 13.5 0.3 0.097 12.4 0.1 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF438) HTH_27 PF13463.1 gi|294496076|ref|YP_003542569.1| - 0.067 13.5 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|294496076|ref|YP_003542569.1| - 0.089 12.5 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|294496076|ref|YP_003542569.1| - 0.095 12.1 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF4393 PF14337.1 gi|294496076|ref|YP_003542569.1| - 0.095 12.1 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) Prismane PF03063.15 gi|294496077|ref|YP_003542570.1| - 8.3e-173 575.4 0.0 9.7e-173 575.2 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Cupin_2 PF07883.6 gi|294496078|ref|YP_003542571.1| - 1.1e-13 50.4 0.0 1.5e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|294496078|ref|YP_003542571.1| - 0.0042 16.7 0.0 0.0054 16.4 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|294496078|ref|YP_003542571.1| - 0.0047 16.5 0.1 0.0057 16.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.17 gi|294496078|ref|YP_003542571.1| - 0.014 14.8 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 Cupin Pirin_C PF05726.8 gi|294496078|ref|YP_003542571.1| - 0.015 15.4 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain 3-HAO PF06052.7 gi|294496078|ref|YP_003542571.1| - 0.086 12.2 0.1 0.098 12.0 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyanthranilic acid dioxygenase cNMP_binding PF00027.24 gi|294496078|ref|YP_003542571.1| - 0.099 12.4 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Cyclic nucleotide-binding domain GPDPase_memb PF10110.4 gi|294496080|ref|YP_003542573.1| - 4.7e-07 29.3 6.1 1.3e-06 27.8 2.1 2.7 1 1 2 3 3 3 2 Membrane domain of glycerophosphoryl diester phosphodiesterase UPF0259 PF06790.6 gi|294496080|ref|YP_003542573.1| - 1.7e-06 27.6 19.3 4.8e-05 22.9 9.7 2.1 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0259) DUF624 PF04854.9 gi|294496080|ref|YP_003542573.1| - 0.0018 18.1 11.3 0.066 13.0 0.4 3.6 1 1 3 4 4 4 3 Protein of unknown function, DUF624 DUF1352 PF07086.7 gi|294496080|ref|YP_003542573.1| - 0.094 12.3 1.6 0.11 12.1 0.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1352) DUF2189 PF09955.4 gi|294496080|ref|YP_003542573.1| - 0.32 10.9 13.5 6.7 6.6 9.5 2.4 1 1 0 1 1 1 0 Predicted integral membrane protein (DUF2189) YfhO PF09586.5 gi|294496080|ref|YP_003542573.1| - 0.77 7.6 7.5 0.032 12.2 1.4 1.3 2 0 0 2 2 2 0 Bacterial membrane protein YfhO DUF872 PF05915.7 gi|294496080|ref|YP_003542573.1| - 0.87 9.4 5.4 3.4 7.5 1.2 2.7 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) PKD_channel PF08016.7 gi|294496080|ref|YP_003542573.1| - 2.6 6.3 6.2 1.4 7.2 1.0 2.1 2 0 0 2 2 2 0 Polycystin cation channel DUF1673 PF07895.6 gi|294496080|ref|YP_003542573.1| - 5.4 6.4 11.4 1 8.8 5.4 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1673) End_beta_barrel PF12195.3 gi|294496081|ref|YP_003542574.1| - 6.5 6.5 7.6 0.97 9.2 0.1 2.6 3 0 0 3 3 3 0 Beta barrel domain of bacteriophage endosialidase DUF2700 PF10912.3 gi|294496083|ref|YP_003542576.1| - 0.31 11.0 2.1 0.27 11.2 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2700) YqzM PF14141.1 gi|294496084|ref|YP_003542577.1| - 0.018 14.8 1.4 0.032 14.0 1.0 1.4 1 0 0 1 1 1 0 YqzM-like protein DUF1628 PF07790.6 gi|294496084|ref|YP_003542577.1| - 0.023 15.4 1.6 0.028 15.1 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) RdRP_3 PF00998.18 gi|294496084|ref|YP_003542577.1| - 0.13 10.7 0.1 0.16 10.4 0.0 1.1 1 0 0 1 1 1 0 Viral RNA dependent RNA polymerase DUF1628 PF07790.6 gi|294496085|ref|YP_003542578.1| - 0.0011 19.6 2.2 0.0011 19.6 1.5 2.6 3 0 0 3 3 3 1 Protein of unknown function (DUF1628) Consortin_C PF15281.1 gi|294496085|ref|YP_003542578.1| - 0.071 12.6 0.0 2.7 7.5 0.0 2.4 2 0 0 2 2 2 0 Consortin C-terminus DUF1628 PF07790.6 gi|294496086|ref|YP_003542579.1| - 0.0048 17.6 1.7 0.0048 17.6 1.2 3.3 3 1 0 3 3 3 1 Protein of unknown function (DUF1628) Acetyltransf_10 PF13673.1 gi|294496088|ref|YP_003542581.1| - 1.7e-14 53.8 0.0 2.9e-14 53.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|294496088|ref|YP_003542581.1| - 1.5e-07 31.3 0.0 5.5e-07 29.5 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|294496088|ref|YP_003542581.1| - 2.2e-07 30.9 0.0 3.9e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|294496088|ref|YP_003542581.1| - 9e-07 28.7 0.1 2.2e-06 27.5 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|294496088|ref|YP_003542581.1| - 1.9e-06 27.8 0.0 1.9e-05 24.6 0.0 2.2 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|294496088|ref|YP_003542581.1| - 0.00023 20.8 0.0 0.00053 19.6 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Gly_acyl_tr_C PF08444.5 gi|294496088|ref|YP_003542581.1| - 0.009 16.0 0.0 0.02 14.8 0.0 1.6 1 0 0 1 1 1 1 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region LAM_C PF12544.3 gi|294496089|ref|YP_003542582.1| - 1.5e-44 151.0 0.0 2.6e-44 150.3 0.0 1.4 1 0 0 1 1 1 1 Lysine-2,3-aminomutase Radical_SAM PF04055.16 gi|294496089|ref|YP_003542582.1| - 2.3e-12 47.4 0.1 7.9e-12 45.6 0.0 1.9 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|294496089|ref|YP_003542582.1| - 0.00024 21.1 0.0 0.0014 18.6 0.0 2.3 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|294496089|ref|YP_003542582.1| - 0.001 19.2 0.0 0.013 15.5 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain ATP-synt_D PF01813.12 gi|294496092|ref|YP_003542585.1| - 1.9e-63 213.5 4.9 2.1e-63 213.4 3.4 1.0 1 0 0 1 1 1 1 ATP synthase subunit D ATP-synt_ab PF00006.20 gi|294496093|ref|YP_003542586.1| - 7.9e-60 202.0 0.0 1e-59 201.6 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|294496093|ref|YP_003542586.1| - 9.1e-17 61.5 0.2 1.6e-16 60.7 0.1 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|294496093|ref|YP_003542586.1| - 1.9e-08 34.3 1.0 1.9e-08 34.3 0.7 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|294496093|ref|YP_003542586.1| - 8.1e-05 22.4 0.2 0.00019 21.2 0.1 1.7 1 0 0 1 1 1 1 HAS barrel domain Phage-MuB_C PF09077.6 gi|294496093|ref|YP_003542586.1| - 0.042 13.5 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 Mu B transposition protein, C terminal ATP-synt_ab PF00006.20 gi|294496094|ref|YP_003542587.1| - 4.4e-97 323.7 0.0 1.1e-96 322.5 0.0 1.6 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|294496094|ref|YP_003542587.1| - 7.1e-22 78.0 2.3 1.4e-21 77.0 1.6 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|294496094|ref|YP_003542587.1| - 1.7e-16 60.1 2.3 1.7e-16 60.1 1.6 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.17 gi|294496094|ref|YP_003542587.1| - 0.01 15.8 0.2 2.7 8.0 0.0 2.6 2 0 0 2 2 2 0 Peptidase family M23 DUF1932 PF09130.6 gi|294496094|ref|YP_003542587.1| - 0.021 14.5 1.8 3.7 7.3 0.2 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1932) AAA_22 PF13401.1 gi|294496094|ref|YP_003542587.1| - 0.057 13.5 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain RnfC_N PF13375.1 gi|294496094|ref|YP_003542587.1| - 0.077 12.7 0.9 0.39 10.4 0.0 2.3 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain ATP-synt_F PF01990.12 gi|294496095|ref|YP_003542588.1| - 1.5e-18 66.9 0.0 1.8e-18 66.7 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.11 gi|294496096|ref|YP_003542589.1| - 2.8e-93 312.6 6.3 3.2e-93 312.5 4.4 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit vATP-synt_E PF01991.13 gi|294496097|ref|YP_003542590.1| - 4.7e-36 123.9 18.0 1.5e-35 122.2 12.5 1.7 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.13 gi|294496097|ref|YP_003542590.1| - 0.00057 19.6 15.0 0.00085 19.1 9.8 1.8 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) DivIVA PF05103.8 gi|294496097|ref|YP_003542590.1| - 0.0015 18.6 7.5 0.0015 18.6 5.2 2.1 1 1 1 2 2 2 1 DivIVA protein DUF2968 PF11180.3 gi|294496097|ref|YP_003542590.1| - 0.0025 17.2 3.8 0.0025 17.2 2.6 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF2968) HrpE PF06188.7 gi|294496097|ref|YP_003542590.1| - 0.0029 17.3 5.7 0.0042 16.8 3.9 1.3 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E DUF3552 PF12072.3 gi|294496097|ref|YP_003542590.1| - 0.0035 16.5 16.3 0.0081 15.3 8.4 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF3552) OmpH PF03938.9 gi|294496097|ref|YP_003542590.1| - 0.37 10.6 8.1 0.52 10.2 5.6 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) HSP70 PF00012.15 gi|294496097|ref|YP_003542590.1| - 1.8 6.3 8.8 2.2 6.1 6.1 1.1 1 0 0 1 1 1 0 Hsp70 protein HK97-gp10_like PF04883.7 gi|294496097|ref|YP_003542590.1| - 6.4 7.7 6.4 16 6.4 0.1 2.4 1 1 0 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component ATP-synt_C PF00137.16 gi|294496098|ref|YP_003542591.1| - 9.3e-19 67.1 12.6 1.1e-18 66.8 8.7 1.1 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.14 gi|294496099|ref|YP_003542592.1| - 6.1e-106 355.0 7.5 1.3e-75 254.7 0.2 2.5 1 1 0 2 2 2 2 V-type ATPase 116kDa subunit family Prefoldin_2 PF01920.15 gi|294496099|ref|YP_003542592.1| - 0.0019 17.9 10.7 0.12 12.1 0.2 2.8 3 0 0 3 3 3 2 Prefoldin subunit Cortex-I_coil PF09304.5 gi|294496099|ref|YP_003542592.1| - 0.02 14.9 3.7 1.9 8.5 0.1 2.4 2 0 0 2 2 2 0 Cortexillin I, coiled coil Spc7 PF08317.6 gi|294496099|ref|YP_003542592.1| - 0.029 13.0 2.9 0.54 8.8 0.3 2.2 2 0 0 2 2 2 0 Spc7 kinetochore protein Phage_GP20 PF06810.6 gi|294496099|ref|YP_003542592.1| - 0.11 11.9 4.6 1.2 8.5 0.8 2.3 2 0 0 2 2 2 0 Phage minor structural protein GP20 Syntaxin-6_N PF09177.6 gi|294496099|ref|YP_003542592.1| - 0.12 12.8 2.8 1.5 9.2 0.3 2.5 2 0 0 2 2 2 0 Syntaxin 6, N-terminal CCDC-167 PF15188.1 gi|294496099|ref|YP_003542592.1| - 0.16 11.9 4.2 8.5 6.4 0.1 3.5 3 0 0 3 3 3 0 Coiled-coil domain-containing protein 167 TACC PF05010.9 gi|294496099|ref|YP_003542592.1| - 0.23 11.1 3.2 0.27 10.9 0.0 2.3 3 0 0 3 3 3 0 Transforming acidic coiled-coil-containing protein (TACC) DUF4164 PF13747.1 gi|294496099|ref|YP_003542592.1| - 0.3 11.2 4.8 0.92 9.6 0.7 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) Prefoldin PF02996.12 gi|294496099|ref|YP_003542592.1| - 0.3 10.7 3.1 10 5.8 0.2 2.3 2 0 0 2 2 2 0 Prefoldin subunit Vps51 PF08700.6 gi|294496099|ref|YP_003542592.1| - 0.35 10.7 6.0 0.33 10.8 1.3 2.7 2 1 0 2 2 2 0 Vps51/Vps67 DUF4140 PF13600.1 gi|294496099|ref|YP_003542592.1| - 0.37 11.2 1.2 3.7 8.0 0.1 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) TMF_DNA_bd PF12329.3 gi|294496099|ref|YP_003542592.1| - 0.42 10.4 11.1 0.8 9.5 0.4 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding TBPIP PF07106.8 gi|294496099|ref|YP_003542592.1| - 0.5 9.8 4.0 10 5.6 0.4 2.3 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DivIC PF04977.10 gi|294496099|ref|YP_003542592.1| - 0.72 9.3 6.0 2.9 7.4 1.3 2.6 2 0 0 2 2 2 0 Septum formation initiator TPR_MLP1_2 PF07926.7 gi|294496099|ref|YP_003542592.1| - 1.6 8.4 6.4 12 5.6 0.1 2.3 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein bZIP_1 PF00170.16 gi|294496099|ref|YP_003542592.1| - 8.3 6.4 6.3 8.3 6.4 0.9 2.3 2 0 0 2 2 2 0 bZIP transcription factor ATP-synt_B PF00430.13 gi|294496100|ref|YP_003542593.1| - 2.7e-08 33.7 34.7 3.5e-06 26.8 13.6 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) V-ATPase_G PF03179.10 gi|294496100|ref|YP_003542593.1| - 0.0021 18.3 19.8 0.0027 17.9 13.7 1.1 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit Rho_Binding PF08912.6 gi|294496100|ref|YP_003542593.1| - 0.042 14.1 3.1 0.042 14.1 2.1 2.6 1 1 1 2 2 2 0 Rho Binding DUF2937 PF11157.3 gi|294496100|ref|YP_003542593.1| - 0.042 13.1 2.2 0.044 13.1 1.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2937) HrpE PF06188.7 gi|294496100|ref|YP_003542593.1| - 0.047 13.4 7.6 0.062 13.0 4.8 1.5 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E Tape_meas_lam_C PF09718.5 gi|294496100|ref|YP_003542593.1| - 0.11 12.4 0.3 0.41 10.6 0.2 2.0 1 1 1 2 2 2 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) DivIVA PF05103.8 gi|294496100|ref|YP_003542593.1| - 0.13 12.3 18.5 0.75 9.8 2.4 2.1 1 1 1 2 2 2 0 DivIVA protein Filament PF00038.16 gi|294496100|ref|YP_003542593.1| - 0.14 11.5 12.4 0.18 11.2 3.1 2.0 1 1 1 2 2 2 0 Intermediate filament protein Exonuc_VII_L PF02601.10 gi|294496100|ref|YP_003542593.1| - 0.16 11.1 8.8 0.28 10.3 6.1 1.4 1 1 0 1 1 1 0 Exonuclease VII, large subunit FdhE PF04216.7 gi|294496100|ref|YP_003542593.1| - 0.17 11.5 4.6 0.2 11.3 3.2 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Ribosomal_S20p PF01649.13 gi|294496100|ref|YP_003542593.1| - 0.18 12.2 9.4 0.087 13.2 1.6 2.2 1 1 1 2 2 2 0 Ribosomal protein S20 AAA-ATPase_like PF09820.4 gi|294496100|ref|YP_003542593.1| - 0.2 10.7 2.5 0.24 10.5 1.8 1.3 1 1 0 1 1 1 0 Predicted AAA-ATPase Acyl-CoA_dh_C PF12806.2 gi|294496100|ref|YP_003542593.1| - 0.77 9.6 6.3 0.2 11.5 1.3 2.0 1 1 1 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like Pex19 PF04614.7 gi|294496100|ref|YP_003542593.1| - 0.79 9.2 10.2 0.93 9.0 7.1 1.1 1 0 0 1 1 1 0 Pex19 protein family DUF3552 PF12072.3 gi|294496100|ref|YP_003542593.1| - 0.88 8.7 24.2 0.066 12.4 10.9 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) GrpE PF01025.14 gi|294496100|ref|YP_003542593.1| - 1.3 8.5 17.3 1.2 8.6 4.8 2.0 1 1 1 2 2 2 0 GrpE IncA PF04156.9 gi|294496100|ref|YP_003542593.1| - 1.5 8.4 12.3 3.2 7.2 8.5 1.6 1 1 0 1 1 1 0 IncA protein Borrelia_P83 PF05262.6 gi|294496100|ref|YP_003542593.1| - 2.7 6.1 17.3 3.1 5.9 12.0 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein Nbl1_Borealin_N PF10444.4 gi|294496100|ref|YP_003542593.1| - 3 7.2 5.2 2.1 7.8 0.2 2.7 1 1 2 3 3 3 0 Nbl1 / Borealin N terminal HlyD_2 PF12700.2 gi|294496100|ref|YP_003542593.1| - 3.4 6.7 10.7 3.7 6.6 7.4 1.0 1 0 0 1 1 1 0 HlyD family secretion protein KLRAQ PF10205.4 gi|294496100|ref|YP_003542593.1| - 3.4 7.7 11.2 16 5.5 7.8 1.8 1 1 0 1 1 1 0 Predicted coiled-coil domain-containing protein Pantoate_ligase PF02569.10 gi|294496100|ref|YP_003542593.1| - 3.9 6.1 7.8 6.5 5.4 0.4 2.0 1 1 1 2 2 2 0 Pantoate-beta-alanine ligase DUF883 PF05957.8 gi|294496100|ref|YP_003542593.1| - 5.8 7.3 12.7 6.2 7.2 1.0 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF262 PF03235.9 gi|294496100|ref|YP_003542593.1| - 5.9 6.8 6.3 7.3 6.4 4.4 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF262 DUF4398 PF14346.1 gi|294496100|ref|YP_003542593.1| - 6.3 6.9 19.8 0.72 9.9 7.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) Asp-B-Hydro_N PF05279.6 gi|294496100|ref|YP_003542593.1| - 7 6.4 16.6 8 6.2 11.5 1.0 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region DUF2229 PF09989.4 gi|294496100|ref|YP_003542593.1| - 8.2 5.8 6.8 10 5.4 4.7 1.3 1 0 0 1 1 1 0 CoA enzyme activase uncharacterised domain (DUF2229) Mnd1 PF03962.10 gi|294496100|ref|YP_003542593.1| - 8.4 6.0 11.9 9.9 5.7 8.3 1.1 1 0 0 1 1 1 0 Mnd1 family PRKCSH-like PF12999.2 gi|294496100|ref|YP_003542593.1| - 8.7 5.8 10.5 5.1 6.6 2.2 2.0 1 1 1 2 2 2 0 Glucosidase II beta subunit-like LUC7 PF03194.10 gi|294496100|ref|YP_003542593.1| - 9 5.7 11.5 11 5.4 8.0 1.1 1 0 0 1 1 1 0 LUC7 N_terminus PTS_IIA PF02255.11 gi|294496100|ref|YP_003542593.1| - 9.3 6.1 15.3 8.9 6.2 3.8 2.7 1 1 1 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit Radical_SAM PF04055.16 gi|294496101|ref|YP_003542594.1| - 1.8e-15 57.5 0.1 4.1e-15 56.3 0.1 1.6 1 1 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|294496101|ref|YP_003542594.1| - 6.9e-10 39.1 1.5 9.6e-10 38.6 0.1 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|294496101|ref|YP_003542594.1| - 0.00056 20.0 0.1 0.0013 18.8 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain polyprenyl_synt PF00348.12 gi|294496102|ref|YP_003542595.1| - 8.2e-48 162.5 0.6 1.6e-47 161.5 0.4 1.5 1 1 0 1 1 1 1 Polyprenyl synthetase Colicin PF01024.14 gi|294496102|ref|YP_003542595.1| - 0.0067 16.0 0.8 0.14 11.7 0.1 2.8 2 1 1 3 3 3 1 Colicin pore forming domain CcmE PF03100.10 gi|294496103|ref|YP_003542596.1| - 2.8e-09 36.6 0.0 3.2e-09 36.4 0.0 1.0 1 0 0 1 1 1 1 CcmE CoxIIa PF08113.6 gi|294496103|ref|YP_003542596.1| - 0.095 12.4 0.1 0.14 11.9 0.1 1.2 1 0 0 1 1 1 0 Cytochrome c oxidase subunit IIa family Radical_SAM PF04055.16 gi|294496104|ref|YP_003542597.1| - 9.1e-19 68.2 0.7 7.4e-18 65.2 0.0 2.5 1 1 2 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|294496104|ref|YP_003542597.1| - 2.5e-08 34.1 0.0 5.2e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|294496104|ref|YP_003542597.1| - 3.3e-08 33.7 2.7 3.3e-08 33.7 1.9 1.8 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|294496104|ref|YP_003542597.1| - 1.7e-07 31.2 0.0 6.3e-07 29.4 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain HTH_AsnC-type PF13404.1 gi|294496105|ref|YP_003542598.1| - 3e-09 36.2 0.4 9.8e-09 34.6 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|294496105|ref|YP_003542598.1| - 9.4e-05 21.7 0.6 0.00033 19.9 0.4 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|294496105|ref|YP_003542598.1| - 0.0091 15.6 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 AsnC family HTH_20 PF12840.2 gi|294496105|ref|YP_003542598.1| - 0.014 15.1 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|294496105|ref|YP_003542598.1| - 0.12 12.5 0.0 0.68 10.0 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator TrmB PF01978.14 gi|294496105|ref|YP_003542598.1| - 0.13 12.0 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB IF2_N PF04760.10 gi|294496105|ref|YP_003542598.1| - 0.14 11.8 0.1 0.56 9.9 0.0 2.0 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_AsnC-type PF13404.1 gi|294496106|ref|YP_003542599.1| - 1e-05 24.9 0.0 2e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|294496106|ref|YP_003542599.1| - 0.00036 19.8 0.4 0.0011 18.2 0.3 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|294496106|ref|YP_003542599.1| - 0.0048 16.1 0.0 0.35 10.2 0.0 2.3 1 1 1 2 2 2 1 Sigma-70, region 4 Aldo_ket_red PF00248.16 gi|294496106|ref|YP_003542599.1| - 0.0069 15.2 0.1 0.013 14.3 0.0 1.5 2 0 0 2 2 2 1 Aldo/keto reductase family HTH_20 PF12840.2 gi|294496106|ref|YP_003542599.1| - 0.025 14.3 0.0 0.05 13.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|294496106|ref|YP_003542599.1| - 0.031 14.1 0.0 0.055 13.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|294496106|ref|YP_003542599.1| - 0.045 13.4 0.0 0.065 12.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HEPN PF05168.9 gi|294496106|ref|YP_003542599.1| - 0.046 13.6 0.1 0.23 11.3 0.0 1.9 1 1 1 2 2 2 0 HEPN domain NAD_binding_7 PF13241.1 gi|294496107|ref|YP_003542600.1| - 3.5e-20 72.1 0.0 6.1e-19 68.1 0.0 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding CysG_dimeriser PF10414.4 gi|294496107|ref|YP_003542600.1| - 0.0085 15.5 0.3 0.02 14.3 0.2 1.6 1 1 0 1 1 1 1 Sirohaem synthase dimerisation region TrkA_N PF02254.13 gi|294496107|ref|YP_003542600.1| - 0.049 13.6 0.1 0.08 12.9 0.1 1.3 1 0 0 1 1 1 0 TrkA-N domain ELFV_dehydrog PF00208.16 gi|294496107|ref|YP_003542600.1| - 0.091 12.3 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFO_IDH_MocA PF01408.17 gi|294496107|ref|YP_003542600.1| - 0.13 12.8 0.0 0.23 12.0 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|294496107|ref|YP_003542600.1| - 0.14 11.2 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GlutR_N PF05201.10 gi|294496108|ref|YP_003542601.1| - 1.4e-36 125.3 0.1 2.9e-36 124.3 0.1 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|294496108|ref|YP_003542601.1| - 1.2e-32 112.8 0.4 3e-32 111.5 0.1 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|294496108|ref|YP_003542601.1| - 5.6e-20 71.1 0.3 1.7e-19 69.6 0.2 1.9 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|294496108|ref|YP_003542601.1| - 2.9e-08 34.0 0.1 2e-07 31.3 0.0 2.5 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|294496108|ref|YP_003542601.1| - 2.8e-07 29.8 0.0 4.9e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|294496108|ref|YP_003542601.1| - 5.1e-05 23.1 0.0 0.00013 21.8 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase OCD_Mu_crystall PF02423.10 gi|294496108|ref|YP_003542601.1| - 0.00021 20.1 0.1 0.00034 19.4 0.0 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family NAD_binding_10 PF13460.1 gi|294496108|ref|YP_003542601.1| - 0.00045 20.2 0.0 0.00089 19.3 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|294496108|ref|YP_003542601.1| - 0.00052 19.0 0.0 0.00083 18.4 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase Oxidored_nitro PF00148.14 gi|294496108|ref|YP_003542601.1| - 0.00072 18.3 0.1 0.0011 17.6 0.1 1.3 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase NAD_binding_7 PF13241.1 gi|294496108|ref|YP_003542601.1| - 0.00075 19.7 0.1 0.0025 18.0 0.0 1.9 2 0 0 2 2 2 1 Putative NAD(P)-binding GFO_IDH_MocA PF01408.17 gi|294496108|ref|YP_003542601.1| - 0.0011 19.4 0.0 0.0032 17.9 0.0 1.8 2 0 0 2 2 1 1 Oxidoreductase family, NAD-binding Rossmann fold THF_DHG_CYH_C PF02882.14 gi|294496108|ref|YP_003542601.1| - 0.0013 17.7 0.4 1.9 7.5 0.0 3.1 4 0 0 4 4 4 2 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain adh_short PF00106.20 gi|294496108|ref|YP_003542601.1| - 0.016 15.1 0.2 0.046 13.6 0.0 1.8 2 0 0 2 2 2 0 short chain dehydrogenase IlvN PF07991.7 gi|294496108|ref|YP_003542601.1| - 0.028 13.8 0.0 0.091 12.1 0.0 1.8 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|294496108|ref|YP_003542601.1| - 0.043 13.8 0.2 0.13 12.2 0.1 1.8 1 1 0 1 1 1 0 TrkA-N domain ApbA PF02558.11 gi|294496108|ref|YP_003542601.1| - 0.1 12.0 0.0 0.25 10.7 0.0 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA ALAD PF00490.16 gi|294496109|ref|YP_003542602.1| - 9.4e-147 488.0 0.2 1.1e-146 487.9 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Aminotran_3 PF00202.16 gi|294496110|ref|YP_003542603.1| - 6.7e-72 242.1 0.0 8.5e-72 241.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|294496110|ref|YP_003542603.1| - 0.003 16.5 0.0 0.0046 15.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Porphobil_deam PF01379.15 gi|294496111|ref|YP_003542604.1| - 1.1e-67 227.1 0.0 1.5e-67 226.6 0.0 1.2 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|294496111|ref|YP_003542604.1| - 1.1e-11 44.6 0.0 2.2e-11 43.6 0.0 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain DHO_dh PF01180.16 gi|294496112|ref|YP_003542605.1| - 3.2e-67 226.5 1.1 3.6e-67 226.4 0.7 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|294496112|ref|YP_003542605.1| - 8.4e-13 47.8 0.0 7.6e-08 31.5 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|294496112|ref|YP_003542605.1| - 7.2e-05 22.1 0.5 0.00047 19.4 0.0 2.2 2 1 0 2 2 2 1 Histidine biosynthesis protein NMO PF03060.10 gi|294496112|ref|YP_003542605.1| - 0.0002 20.6 1.6 0.0002 20.6 1.1 1.6 1 1 1 2 2 2 1 Nitronate monooxygenase IMPDH PF00478.20 gi|294496112|ref|YP_003542605.1| - 0.00074 18.4 0.2 0.0012 17.7 0.1 1.3 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NanE PF04131.9 gi|294496112|ref|YP_003542605.1| - 0.0043 16.0 0.9 0.015 14.2 0.6 1.8 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase DUF561 PF04481.7 gi|294496112|ref|YP_003542605.1| - 0.0097 14.8 2.2 0.014 14.3 0.0 2.2 3 0 0 3 3 3 1 Protein of unknown function (DUF561) PcrB PF01884.12 gi|294496112|ref|YP_003542605.1| - 0.025 13.8 0.3 0.066 12.4 0.1 1.7 2 0 0 2 2 2 0 PcrB family ThiG PF05690.9 gi|294496112|ref|YP_003542605.1| - 0.072 12.1 0.2 0.072 12.1 0.1 1.8 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG NAD_binding_1 PF00175.16 gi|294496113|ref|YP_003542606.1| - 9e-12 45.5 0.0 2.2e-11 44.2 0.0 1.7 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|294496113|ref|YP_003542606.1| - 2.7e-11 42.7 7.0 2.7e-11 42.7 4.9 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|294496113|ref|YP_003542606.1| - 1.9e-05 24.6 0.0 4.5e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|294496113|ref|YP_003542606.1| - 0.0073 16.2 0.0 0.38 10.6 0.0 2.6 3 0 0 3 3 3 1 Ferric reductase NAD binding domain Fer2_3 PF13085.1 gi|294496113|ref|YP_003542606.1| - 0.15 11.8 0.5 0.25 11.1 0.4 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain FAA_hydrolase PF01557.13 gi|294496115|ref|YP_003542608.1| - 9.3e-65 218.1 0.0 1.1e-64 217.8 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family TrmB PF01978.14 gi|294496116|ref|YP_003542609.1| - 0.0018 17.9 0.1 0.0026 17.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|294496116|ref|YP_003542609.1| - 0.009 15.3 0.3 0.017 14.5 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|294496116|ref|YP_003542609.1| - 0.027 14.1 0.0 0.079 12.6 0.0 1.8 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_5 PF01022.15 gi|294496116|ref|YP_003542609.1| - 0.037 13.7 0.2 0.11 12.2 0.1 1.8 1 1 1 2 2 2 0 Bacterial regulatory protein, arsR family RNA_pol_Rpc34 PF05158.7 gi|294496116|ref|YP_003542609.1| - 0.047 12.8 0.0 0.069 12.3 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_27 PF13463.1 gi|294496116|ref|YP_003542609.1| - 0.048 13.9 0.0 0.076 13.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain tRNA-synt_1c PF00749.16 gi|294496117|ref|YP_003542610.1| - 7.8e-63 212.0 0.0 9.8e-63 211.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|294496117|ref|YP_003542610.1| - 2.5e-25 89.1 0.0 4.6e-25 88.2 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_1e PF01406.14 gi|294496117|ref|YP_003542610.1| - 0.099 11.7 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain Ribosomal_S3Ae PF01015.13 gi|294496118|ref|YP_003542611.1| - 9.9e-70 233.8 9.2 1.1e-69 233.6 6.4 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family PNPase PF03726.9 gi|294496118|ref|YP_003542611.1| - 0.75 10.1 6.3 11 6.4 0.5 3.3 2 1 1 3 3 3 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain tRNA-synt_2b PF00587.20 gi|294496119|ref|YP_003542612.1| - 6.5e-14 51.8 0.0 1e-13 51.2 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) UDG PF03167.14 gi|294496120|ref|YP_003542613.1| - 6.3e-36 123.1 0.0 8.6e-36 122.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DHH PF01368.15 gi|294496122|ref|YP_003542615.1| - 1.7e-17 63.4 1.2 2.9e-17 62.6 0.8 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|294496122|ref|YP_003542615.1| - 2.9e-14 52.5 0.8 8.2e-14 51.0 0.5 1.8 1 0 0 1 1 1 1 DHHA1 domain Ribosomal_S13_N PF08069.7 gi|294496123|ref|YP_003542616.1| - 7.9e-23 80.0 0.9 1.4e-22 79.2 0.1 1.9 2 1 1 3 3 3 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|294496123|ref|YP_003542616.1| - 1.1e-19 70.0 0.1 1.4e-19 69.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 MSA-2c PF12238.3 gi|294496123|ref|YP_003542616.1| - 0.048 13.3 0.1 0.063 12.9 0.1 1.2 1 0 0 1 1 1 0 Merozoite surface antigen 2c Methyltransf_11 PF08241.7 gi|294496124|ref|YP_003542617.1| - 3.3e-15 56.3 0.0 4.8e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|294496124|ref|YP_003542617.1| - 2.4e-12 46.7 0.0 3.1e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|294496124|ref|YP_003542617.1| - 2.1e-11 44.3 0.0 3.4e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|294496124|ref|YP_003542617.1| - 4.1e-10 39.9 0.0 8.3e-10 38.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|294496124|ref|YP_003542617.1| - 8.2e-10 38.1 0.0 1.2e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.1 gi|294496124|ref|YP_003542617.1| - 8.1e-08 32.1 0.0 1.3e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|294496124|ref|YP_003542617.1| - 6.5e-07 29.3 0.0 9.4e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|294496124|ref|YP_003542617.1| - 1.6e-05 25.3 0.0 2.9e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|294496124|ref|YP_003542617.1| - 0.0004 19.5 0.0 0.00056 19.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family DUF938 PF06080.7 gi|294496124|ref|YP_003542617.1| - 0.00092 18.8 0.0 0.0013 18.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_8 PF05148.10 gi|294496124|ref|YP_003542617.1| - 0.0049 16.5 0.0 0.013 15.0 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_15 PF09445.5 gi|294496124|ref|YP_003542617.1| - 0.0068 15.9 0.0 0.0089 15.5 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.9 gi|294496124|ref|YP_003542617.1| - 0.054 12.8 0.0 0.084 12.2 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain URO-D PF01208.12 gi|294496125|ref|YP_003542618.1| - 2.4e-79 266.7 0.0 2.7e-79 266.5 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) URO-D PF01208.12 gi|294496127|ref|YP_003542620.1| - 3.8e-69 233.2 0.0 4.6e-69 232.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Cpn60_TCP1 PF00118.19 gi|294496128|ref|YP_003542621.1| - 2.5e-104 349.6 14.4 2.9e-104 349.4 10.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family eRF1_3 PF03465.10 gi|294496128|ref|YP_003542621.1| - 0.054 13.7 0.8 0.65 10.2 0.5 2.5 1 1 0 1 1 1 0 eRF1 domain 3 Hydantoinase_A PF01968.13 gi|294496129|ref|YP_003542622.1| - 5.7e-80 268.5 1.3 7.9e-80 268.0 0.0 1.8 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|294496129|ref|YP_003542622.1| - 3.1e-37 127.7 4.3 1.6e-34 118.9 0.2 3.8 3 1 0 3 3 3 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|294496129|ref|YP_003542622.1| - 0.00036 18.9 1.9 0.023 13.0 0.0 2.2 2 0 0 2 2 2 2 MutL protein StbA PF06406.6 gi|294496129|ref|YP_003542622.1| - 0.0013 17.7 0.2 0.0031 16.5 0.1 1.6 1 0 0 1 1 1 1 StbA protein BcrAD_BadFG PF01869.15 gi|294496129|ref|YP_003542622.1| - 0.12 11.6 0.9 0.57 9.4 0.0 2.4 3 0 0 3 3 3 0 BadF/BadG/BcrA/BcrD ATPase family URO-D PF01208.12 gi|294496130|ref|YP_003542623.1| - 2.9e-59 200.7 0.2 8.5e-59 199.1 0.0 1.8 2 0 0 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) B12-binding PF02310.14 gi|294496130|ref|YP_003542623.1| - 1.1e-21 76.9 0.0 5.7e-21 74.6 0.1 2.1 2 0 0 2 2 2 1 B12 binding domain B12-binding_2 PF02607.12 gi|294496130|ref|YP_003542623.1| - 1.8e-15 56.7 0.1 4.7e-15 55.3 0.0 1.8 1 0 0 1 1 1 1 B12 binding domain Rabaptin PF03528.10 gi|294496130|ref|YP_003542623.1| - 0.034 14.0 0.2 0.1 12.5 0.1 1.8 1 1 0 1 1 1 0 Rabaptin DUF1018 PF06252.7 gi|294496130|ref|YP_003542623.1| - 0.15 12.5 1.4 1 9.8 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1018) DUF1724 PF08350.5 gi|294496131|ref|YP_003542624.1| - 6.6e-24 83.2 0.1 1.8e-23 81.7 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|294496131|ref|YP_003542624.1| - 0.00014 21.4 0.5 0.00014 21.4 0.3 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|294496131|ref|YP_003542624.1| - 0.0032 17.2 0.0 0.0051 16.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|294496131|ref|YP_003542624.1| - 0.025 14.2 0.1 0.051 13.2 0.1 1.5 1 0 0 1 1 1 0 HTH domain HTH_34 PF13601.1 gi|294496131|ref|YP_003542624.1| - 0.088 12.8 0.1 0.33 11.0 0.1 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|294496131|ref|YP_003542624.1| - 0.11 12.2 0.1 0.59 9.9 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_27 PF13463.1 gi|294496131|ref|YP_003542624.1| - 0.13 12.5 0.1 0.23 11.8 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain tRNA-synt_His PF13393.1 gi|294496132|ref|YP_003542625.1| - 3e-66 223.5 0.0 3.7e-66 223.3 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|294496132|ref|YP_003542625.1| - 5.3e-26 91.2 0.2 8.6e-26 90.5 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|294496132|ref|YP_003542625.1| - 3.1e-13 49.4 0.3 6.5e-13 48.4 0.2 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|294496132|ref|YP_003542625.1| - 4e-06 25.8 4.6 0.0046 15.7 0.4 3.1 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|294496132|ref|YP_003542625.1| - 0.0017 17.5 0.0 0.012 14.8 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) Amidohydro_1 PF01979.15 gi|294496134|ref|YP_003542627.1| - 4.8e-20 72.4 0.0 4e-19 69.4 0.0 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|294496134|ref|YP_003542627.1| - 2.1e-11 44.3 0.0 5.1e-10 39.8 0.0 2.3 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|294496134|ref|YP_003542627.1| - 1.4e-10 40.6 0.0 1.9e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.6 gi|294496134|ref|YP_003542627.1| - 2.6e-09 36.8 0.0 1.1e-08 34.7 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|294496134|ref|YP_003542627.1| - 0.0017 18.0 0.0 0.0039 16.9 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase Usp PF00582.21 gi|294496135|ref|YP_003542628.1| - 1.5e-39 135.3 0.0 1.7e-39 135.2 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family MGS PF02142.17 gi|294496135|ref|YP_003542628.1| - 0.051 13.4 0.1 0.13 12.1 0.0 1.7 2 1 1 3 3 3 0 MGS-like domain CTP_transf_3 PF02348.14 gi|294496135|ref|YP_003542628.1| - 0.14 11.8 0.0 3.7 7.0 0.0 2.1 2 0 0 2 2 2 0 Cytidylyltransferase CBS PF00571.23 gi|294496136|ref|YP_003542629.1| - 5e-45 151.0 7.6 9.6e-15 54.1 0.1 4.2 4 0 0 4 4 4 4 CBS domain SNURF PF07192.6 gi|294496136|ref|YP_003542629.1| - 0.0055 16.5 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 SNURF/RPN4 protein Cache_3 PF14827.1 gi|294496136|ref|YP_003542629.1| - 0.065 13.1 0.4 8.4 6.3 0.0 3.3 4 0 0 4 4 4 0 Sensory domain of two-component sensor kinase RibD_C PF01872.12 gi|294496137|ref|YP_003542630.1| - 8.2e-54 182.2 0.0 9.2e-54 182.0 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Peptidase_S51 PF03575.12 gi|294496137|ref|YP_003542630.1| - 0.11 12.1 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Peptidase family S51 Thioredoxin PF00085.15 gi|294496138|ref|YP_003542631.1| - 1.3e-09 37.6 0.0 2.3e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin DIM1 PF02966.11 gi|294496138|ref|YP_003542631.1| - 0.00069 19.1 0.0 0.00096 18.6 0.0 1.2 1 0 0 1 1 1 1 Mitosis protein DIM1 Thioredoxin_3 PF13192.1 gi|294496138|ref|YP_003542631.1| - 0.002 17.9 0.0 0.0053 16.5 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin domain Thioredoxin_2 PF13098.1 gi|294496138|ref|YP_003542631.1| - 0.0036 17.4 0.0 0.0065 16.6 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain Redoxin PF08534.5 gi|294496138|ref|YP_003542631.1| - 0.011 15.2 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 0 Redoxin Thioredoxin_8 PF13905.1 gi|294496138|ref|YP_003542631.1| - 0.017 15.2 0.0 0.038 14.1 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin-like T4_deiodinase PF00837.12 gi|294496138|ref|YP_003542631.1| - 0.026 13.5 0.0 0.031 13.2 0.0 1.2 1 0 0 1 1 1 0 Iodothyronine deiodinase Thioredoxin_4 PF13462.1 gi|294496138|ref|YP_003542631.1| - 0.029 14.3 0.0 0.085 12.8 0.0 1.7 1 1 1 2 2 2 0 Thioredoxin TraF PF13728.1 gi|294496138|ref|YP_003542631.1| - 0.046 13.2 0.0 0.064 12.7 0.0 1.1 1 0 0 1 1 1 0 F plasmid transfer operon protein Thioredoxin_7 PF13899.1 gi|294496138|ref|YP_003542631.1| - 0.079 12.9 0.0 0.43 10.6 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin-like DUF4006 PF13179.1 gi|294496138|ref|YP_003542631.1| - 0.09 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF4006) N_NLPC_P60 PF12912.2 gi|294496138|ref|YP_003542631.1| - 0.095 12.7 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 NLPC_P60 stabilising domain, N term DsbD PF02683.10 gi|294496139|ref|YP_003542632.1| - 9.5e-38 129.9 20.0 1.1e-37 129.6 13.9 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|294496139|ref|YP_003542632.1| - 4.3e-12 46.1 20.6 6e-12 45.7 14.3 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region UPF0016 PF01169.14 gi|294496139|ref|YP_003542632.1| - 6.4 6.9 13.1 0.29 11.2 0.8 3.1 2 1 1 3 3 3 0 Uncharacterized protein family UPF0016 CbiC PF02570.10 gi|294496140|ref|YP_003542633.1| - 9.2e-63 211.2 0.6 1.1e-62 210.9 0.4 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase Reductase_C PF14759.1 gi|294496140|ref|YP_003542633.1| - 0.08 13.2 0.1 1.4 9.3 0.0 2.5 2 0 0 2 2 2 0 Reductase C-terminal TP_methylase PF00590.15 gi|294496141|ref|YP_003542634.1| - 1.4e-32 113.1 0.1 1.7e-32 112.8 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_C PF01890.11 gi|294496142|ref|YP_003542635.1| - 7.8e-33 113.3 0.3 8.5e-33 113.1 0.2 1.0 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus NusA_N PF08529.6 gi|294496142|ref|YP_003542635.1| - 0.0095 15.9 0.1 0.012 15.5 0.1 1.3 1 0 0 1 1 1 1 NusA N-terminal domain CbiG_N PF11760.3 gi|294496143|ref|YP_003542636.1| - 7.6e-34 115.2 2.6 1.5e-33 114.3 0.1 2.5 3 0 0 3 3 3 1 Cobalamin synthesis G N-terminal rve PF00665.21 gi|294496143|ref|YP_003542636.1| - 0.1 12.7 0.0 0.17 11.9 0.0 1.5 1 1 0 1 1 1 0 Integrase core domain TP_methylase PF00590.15 gi|294496144|ref|YP_003542637.1| - 2.5e-42 144.9 0.0 2.8e-42 144.7 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|294496144|ref|YP_003542637.1| - 0.0035 17.5 0.1 0.023 14.8 0.1 2.1 1 1 0 1 1 1 1 Radical SAM superfamily TP_methylase PF00590.15 gi|294496145|ref|YP_003542638.1| - 8.3e-33 113.8 0.0 1.7e-32 112.8 0.0 1.5 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DNA_pol3_beta PF00712.14 gi|294496145|ref|YP_003542638.1| - 0.055 13.3 0.3 0.11 12.4 0.1 1.6 2 0 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain Methyltransf_31 PF13847.1 gi|294496146|ref|YP_003542639.1| - 4e-16 58.9 0.1 4.8e-16 58.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|294496146|ref|YP_003542639.1| - 1.2e-13 51.6 0.0 1.6e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|294496146|ref|YP_003542639.1| - 1.6e-10 40.6 0.0 2.3e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|294496146|ref|YP_003542639.1| - 6.4e-08 32.8 0.0 9.2e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|294496146|ref|YP_003542639.1| - 6.4e-08 31.8 0.1 2.9e-07 29.7 0.0 1.8 2 0 0 2 2 2 1 Putative methyltransferase PrmA PF06325.8 gi|294496146|ref|YP_003542639.1| - 1.5e-07 30.8 0.1 1.7e-07 30.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|294496146|ref|YP_003542639.1| - 1.6e-07 31.3 0.0 2.3e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|294496146|ref|YP_003542639.1| - 9.3e-07 28.5 0.1 2.2e-06 27.3 0.1 1.6 1 1 1 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|294496146|ref|YP_003542639.1| - 1.6e-06 28.5 0.0 2e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|294496146|ref|YP_003542639.1| - 5.1e-06 26.9 0.0 7.6e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|294496146|ref|YP_003542639.1| - 3e-05 23.1 0.1 5.6e-05 22.2 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase Ubie_methyltran PF01209.13 gi|294496146|ref|YP_003542639.1| - 3.8e-05 22.9 0.1 4.8e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_24 PF13578.1 gi|294496146|ref|YP_003542639.1| - 4.3e-05 24.2 0.0 6.2e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|294496146|ref|YP_003542639.1| - 7.1e-05 22.0 0.0 9.4e-05 21.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DOT1 PF08123.8 gi|294496146|ref|YP_003542639.1| - 9.6e-05 21.7 0.0 0.00017 20.9 0.0 1.3 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_15 PF09445.5 gi|294496146|ref|YP_003542639.1| - 0.00011 21.7 0.1 0.00015 21.3 0.1 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|294496146|ref|YP_003542639.1| - 0.00048 19.5 0.0 0.00059 19.2 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.13 gi|294496146|ref|YP_003542639.1| - 0.00052 19.6 0.0 0.00075 19.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.1 gi|294496146|ref|YP_003542639.1| - 0.0008 19.1 0.0 0.001 18.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|294496146|ref|YP_003542639.1| - 0.0011 18.1 0.1 0.0013 17.9 0.1 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_5 PF01795.14 gi|294496146|ref|YP_003542639.1| - 0.0016 17.8 0.0 0.0022 17.3 0.0 1.2 1 0 0 1 1 1 1 MraW methylase family GCD14 PF08704.5 gi|294496146|ref|YP_003542639.1| - 0.0025 17.3 0.0 0.0032 17.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.15 gi|294496146|ref|YP_003542639.1| - 0.0025 16.8 0.0 0.0045 16.0 0.0 1.4 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.1 gi|294496146|ref|YP_003542639.1| - 0.011 15.4 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF633 PF04816.7 gi|294496146|ref|YP_003542639.1| - 0.013 14.8 0.1 0.034 13.4 0.1 1.7 1 1 0 1 1 1 0 Family of unknown function (DUF633) FmrO PF07091.6 gi|294496146|ref|YP_003542639.1| - 0.025 13.6 0.0 0.029 13.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_16 PF10294.4 gi|294496146|ref|YP_003542639.1| - 0.031 13.7 0.0 0.047 13.1 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_2 PF00891.13 gi|294496146|ref|YP_003542639.1| - 0.071 12.2 0.0 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase TehB PF03848.9 gi|294496146|ref|YP_003542639.1| - 0.12 11.4 0.2 0.42 9.7 0.0 1.8 1 1 0 2 2 2 0 Tellurite resistance protein TehB GATase_3 PF07685.9 gi|294496147|ref|YP_003542640.1| - 5.5e-43 146.2 0.1 8.6e-43 145.6 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|294496147|ref|YP_003542640.1| - 2.3e-28 98.9 0.1 5.6e-28 97.6 0.0 1.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|294496147|ref|YP_003542640.1| - 5e-18 65.4 0.1 1.5e-17 63.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain GATase PF00117.23 gi|294496147|ref|YP_003542640.1| - 4.7e-06 26.1 0.0 9.7e-06 25.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|294496147|ref|YP_003542640.1| - 0.00094 18.8 0.0 0.0018 17.9 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|294496147|ref|YP_003542640.1| - 0.095 12.1 0.0 0.3 10.4 0.0 1.9 2 0 0 2 2 2 0 Peptidase C26 DUF1724 PF08350.5 gi|294496148|ref|YP_003542641.1| - 5.4e-24 83.5 0.7 7.4e-22 76.6 0.3 3.2 3 0 0 3 3 3 1 Domain of unknown function (DUF1724) HTH_45 PF14947.1 gi|294496148|ref|YP_003542641.1| - 0.016 14.9 0.2 0.68 9.7 0.0 3.1 3 0 0 3 3 3 0 Winged helix-turn-helix HTH_27 PF13463.1 gi|294496148|ref|YP_003542641.1| - 0.078 13.3 0.1 0.17 12.2 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Response_reg PF00072.19 gi|294496149|ref|YP_003542642.1| - 4.6e-28 97.4 0.0 5.5e-28 97.2 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain UbiA PF01040.13 gi|294496150|ref|YP_003542643.1| - 3.5e-21 75.5 17.7 3.5e-21 75.5 12.3 1.5 1 1 1 2 2 2 2 UbiA prenyltransferase family HATPase_c PF02518.21 gi|294496151|ref|YP_003542644.1| - 3.3e-36 123.3 0.0 8.8e-36 122.0 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|294496151|ref|YP_003542644.1| - 1.3e-22 79.5 0.1 6.8e-22 77.2 0.0 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|294496151|ref|YP_003542644.1| - 2.5e-19 69.1 0.4 5.9e-19 67.9 0.0 1.9 3 0 0 3 3 1 1 PAS fold Cache_1 PF02743.13 gi|294496151|ref|YP_003542644.1| - 1.6e-11 43.5 0.1 3.9e-11 42.3 0.0 1.6 1 0 0 1 1 1 1 Cache domain PAS_9 PF13426.1 gi|294496151|ref|YP_003542644.1| - 1.7e-07 31.5 0.0 4.2e-07 30.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|294496151|ref|YP_003542644.1| - 1.5e-06 27.9 0.0 3.2e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold HAMP PF00672.20 gi|294496151|ref|YP_003542644.1| - 2.3e-05 24.4 0.0 4.7e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 HAMP domain HATPase_c_5 PF14501.1 gi|294496151|ref|YP_003542644.1| - 0.00014 21.4 0.0 0.00037 20.1 0.0 1.8 1 0 0 1 1 1 1 GHKL domain PAS_4 PF08448.5 gi|294496151|ref|YP_003542644.1| - 0.0007 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|294496151|ref|YP_003542644.1| - 0.001 18.7 0.0 0.0028 17.2 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|294496151|ref|YP_003542644.1| - 0.0019 18.0 0.0 0.0035 17.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_11 PF14598.1 gi|294496151|ref|YP_003542644.1| - 0.019 14.9 0.0 0.054 13.4 0.0 1.7 1 0 0 1 1 1 0 PAS domain PMC2NT PF08066.7 gi|294496151|ref|YP_003542644.1| - 6.9 7.0 6.7 5 7.4 0.1 3.5 3 1 1 4 4 4 0 PMC2NT (NUC016) domain CorA PF01544.13 gi|294496152|ref|YP_003542645.1| - 5.8e-86 288.1 9.9 7e-86 287.8 6.9 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein CTK3 PF12243.3 gi|294496152|ref|YP_003542645.1| - 0.0032 17.1 0.1 0.0075 15.9 0.0 1.6 1 0 0 1 1 1 1 CTD kinase subunit gamma CTK3 T2SF PF00482.18 gi|294496152|ref|YP_003542645.1| - 0.094 12.6 0.3 0.094 12.6 0.2 2.5 3 0 0 3 3 3 0 Type II secretion system (T2SS), protein F ALMT PF11744.3 gi|294496152|ref|YP_003542645.1| - 0.2 10.2 1.7 0.31 9.6 1.2 1.3 1 0 0 1 1 1 0 Aluminium activated malate transporter Glycos_transf_3 PF00591.16 gi|294496153|ref|YP_003542646.1| - 1.6e-103 345.5 0.1 2.2e-103 345.0 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|294496153|ref|YP_003542646.1| - 8.1e-19 66.9 0.2 2.5e-18 65.4 0.1 1.9 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PRAI PF00697.17 gi|294496154|ref|YP_003542647.1| - 4.8e-36 124.1 0.1 5.5e-36 123.9 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BtpA PF03437.10 gi|294496154|ref|YP_003542647.1| - 0.012 14.8 1.1 0.016 14.4 0.3 1.5 1 1 1 2 2 2 0 BtpA family TMP-TENI PF02581.12 gi|294496154|ref|YP_003542647.1| - 0.078 12.0 0.6 0.23 10.5 0.0 1.9 2 1 0 2 2 2 0 Thiamine monophosphate synthase/TENI Chorismate_bind PF00425.13 gi|294496155|ref|YP_003542648.1| - 2.9e-94 315.1 0.0 2.9e-93 311.9 0.0 2.3 2 1 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|294496155|ref|YP_003542648.1| - 1.9e-25 89.5 0.1 1.6e-24 86.4 0.0 2.3 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|294496156|ref|YP_003542649.1| - 2.9e-47 160.5 0.0 3.3e-47 160.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|294496156|ref|YP_003542649.1| - 2.3e-16 59.9 0.0 4.3e-16 59.0 0.0 1.4 1 1 0 1 1 1 1 Peptidase C26 DUF2124 PF09897.4 gi|294496156|ref|YP_003542649.1| - 0.11 12.1 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2124) AAA_18 PF13238.1 gi|294496157|ref|YP_003542650.1| - 9.3e-23 80.9 0.1 1.5e-22 80.3 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|294496157|ref|YP_003542650.1| - 2.6e-15 57.3 0.0 3.2e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|294496157|ref|YP_003542650.1| - 3.4e-06 27.1 0.0 5.3e-06 26.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|294496157|ref|YP_003542650.1| - 5.8e-05 22.9 0.0 0.0005 19.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|294496157|ref|YP_003542650.1| - 7.1e-05 22.7 0.0 0.003 17.4 0.0 2.2 1 1 0 1 1 1 1 Shikimate kinase Zeta_toxin PF06414.7 gi|294496157|ref|YP_003542650.1| - 0.00013 21.1 0.0 0.001 18.1 0.0 2.2 2 1 1 3 3 3 1 Zeta toxin CoaE PF01121.15 gi|294496157|ref|YP_003542650.1| - 0.00013 21.4 0.0 0.022 14.1 0.0 2.2 1 1 1 2 2 2 1 Dephospho-CoA kinase AAA PF00004.24 gi|294496157|ref|YP_003542650.1| - 0.00029 21.0 0.0 0.00042 20.5 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PRK PF00485.13 gi|294496157|ref|YP_003542650.1| - 0.00036 20.1 0.0 0.0009 18.8 0.0 1.7 1 1 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family ADK PF00406.17 gi|294496157|ref|YP_003542650.1| - 0.0024 17.7 0.3 0.54 10.1 0.0 3.0 1 1 2 3 3 3 1 Adenylate kinase AAA_22 PF13401.1 gi|294496157|ref|YP_003542650.1| - 0.0045 17.1 0.0 0.0093 16.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|294496157|ref|YP_003542650.1| - 0.0065 16.1 0.0 0.011 15.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) tRNA_lig_kinase PF08303.6 gi|294496157|ref|YP_003542650.1| - 0.0071 16.2 0.1 0.015 15.1 0.0 1.8 1 1 0 1 1 1 1 tRNA ligase kinase domain UPF0180 PF03698.8 gi|294496157|ref|YP_003542650.1| - 0.012 15.4 0.3 4.2 7.2 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) Rad17 PF03215.10 gi|294496157|ref|YP_003542650.1| - 0.031 12.9 0.0 0.034 12.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein KTI12 PF08433.5 gi|294496157|ref|YP_003542650.1| - 0.035 13.3 0.0 0.051 12.7 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Cytidylate_kin2 PF13189.1 gi|294496157|ref|YP_003542650.1| - 0.055 13.3 0.0 0.087 12.7 0.0 1.6 1 1 0 1 1 1 0 Cytidylate kinase-like family AAA_16 PF13191.1 gi|294496157|ref|YP_003542650.1| - 0.073 13.0 0.2 0.12 12.3 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain CTP_transf_2 PF01467.21 gi|294496159|ref|YP_003542652.1| - 1.6e-16 60.7 0.0 2.2e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase FrhB_FdhB_C PF04432.8 gi|294496160|ref|YP_003542653.1| - 1.4e-42 144.8 0.6 2.9e-42 143.7 0.0 1.8 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|294496160|ref|YP_003542653.1| - 9.7e-16 57.4 0.0 2.1e-15 56.3 0.0 1.6 2 0 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.22 gi|294496160|ref|YP_003542653.1| - 6.2e-09 35.0 21.1 3.9e-08 32.5 4.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|294496160|ref|YP_003542653.1| - 5.5e-08 32.4 9.3 5.5e-08 32.4 6.4 2.0 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294496160|ref|YP_003542653.1| - 2.3e-07 31.0 11.3 2.3e-07 31.0 7.8 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294496160|ref|YP_003542653.1| - 1.3e-06 28.5 10.3 1.3e-06 28.5 7.1 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294496160|ref|YP_003542653.1| - 4.7e-06 26.2 18.9 1.9e-05 24.3 3.8 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294496160|ref|YP_003542653.1| - 1.3e-05 24.8 5.4 1.3e-05 24.8 3.7 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|294496160|ref|YP_003542653.1| - 1.5e-05 24.8 5.9 1.5e-05 24.8 4.1 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294496160|ref|YP_003542653.1| - 4e-05 23.3 10.3 4e-05 23.3 7.1 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|294496160|ref|YP_003542653.1| - 4.3e-05 23.9 9.7 0.0054 17.2 0.6 3.5 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|294496160|ref|YP_003542653.1| - 6.4e-05 23.6 10.5 6.4e-05 23.6 7.2 2.5 2 1 0 2 2 1 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|294496160|ref|YP_003542653.1| - 0.00032 20.7 2.2 0.00032 20.7 1.5 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|294496160|ref|YP_003542653.1| - 0.0015 18.7 7.9 0.0015 18.7 5.5 2.0 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|294496160|ref|YP_003542653.1| - 0.015 15.6 11.8 0.19 12.1 3.3 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain FAM72 PF14976.1 gi|294496160|ref|YP_003542653.1| - 0.043 13.6 0.6 0.043 13.6 0.4 1.8 2 0 0 2 2 1 0 FAM72 protein Fer4_3 PF12798.2 gi|294496160|ref|YP_003542653.1| - 1.9 9.2 28.6 0.2 12.2 6.5 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Bac_luciferase PF00296.15 gi|294496161|ref|YP_003542654.1| - 3.3e-68 230.0 0.0 4e-68 229.8 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF1522 PF07482.6 gi|294496161|ref|YP_003542654.1| - 0.022 14.9 0.6 0.094 12.8 0.3 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1522) PHP PF02811.14 gi|294496161|ref|YP_003542654.1| - 0.15 11.8 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 PHP domain Desulfoferrod_N PF06397.7 gi|294496162|ref|YP_003542655.1| - 5.3e-15 54.5 11.3 5.7e-15 54.4 7.8 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain zf-UDP PF14569.1 gi|294496162|ref|YP_003542655.1| - 0.012 15.3 2.4 0.013 15.2 1.7 1.1 1 0 0 1 1 1 0 Zinc-binding RING-finger zf-Sec23_Sec24 PF04810.10 gi|294496162|ref|YP_003542655.1| - 0.027 14.0 0.4 0.032 13.7 0.0 1.4 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger DUF3449 PF11931.3 gi|294496162|ref|YP_003542655.1| - 0.16 11.4 0.3 0.17 11.3 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3449) RRN7 PF11781.3 gi|294496162|ref|YP_003542655.1| - 0.23 10.9 3.3 0.32 10.5 2.3 1.3 1 1 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF2180 PF09947.4 gi|294496163|ref|YP_003542656.1| - 1.1e-27 95.6 10.9 1.2e-27 95.4 7.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) FYVE PF01363.16 gi|294496163|ref|YP_003542656.1| - 0.02 14.8 5.9 0.032 14.1 4.1 1.4 1 1 0 1 1 1 0 FYVE zinc finger zf-AN1 PF01428.11 gi|294496163|ref|YP_003542656.1| - 0.85 9.5 8.8 0.49 10.3 1.0 2.3 2 1 0 2 2 2 0 AN1-like Zinc finger Ribosomal_S27e PF01667.12 gi|294496163|ref|YP_003542656.1| - 2 8.0 9.4 1.4 8.4 3.8 2.4 2 1 0 2 2 2 0 Ribosomal protein S27 zf-UBR PF02207.15 gi|294496163|ref|YP_003542656.1| - 2.5 7.8 9.6 0.35 10.6 2.8 2.0 1 1 1 2 2 2 0 Putative zinc finger in N-recognin (UBR box) Tnp_zf-ribbon_2 PF13842.1 gi|294496163|ref|YP_003542656.1| - 3.1 8.2 8.5 3.1 8.2 1.9 2.4 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DZR PF12773.2 gi|294496163|ref|YP_003542656.1| - 4.5 7.1 8.9 55 3.6 6.1 2.2 1 1 0 1 1 1 0 Double zinc ribbon DUF2180 PF09947.4 gi|294496164|ref|YP_003542657.1| - 4e-24 84.1 7.1 4.5e-24 83.9 4.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) FYVE PF01363.16 gi|294496164|ref|YP_003542657.1| - 0.0092 15.8 3.5 0.014 15.2 2.5 1.4 1 1 0 1 1 1 1 FYVE zinc finger zf-RING_5 PF14634.1 gi|294496164|ref|YP_003542657.1| - 0.024 14.3 5.7 1.9 8.3 1.0 2.3 2 0 0 2 2 2 0 zinc-RING finger domain zf-C3HC4_3 PF13920.1 gi|294496164|ref|YP_003542657.1| - 0.39 10.4 5.4 5.6 6.7 1.4 2.6 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-C4_ClpX PF06689.8 gi|294496164|ref|YP_003542657.1| - 0.41 10.2 3.4 1 8.9 0.0 2.6 3 0 0 3 3 3 0 ClpX C4-type zinc finger zf-UBR PF02207.15 gi|294496164|ref|YP_003542657.1| - 0.44 10.2 4.5 2.3 8.0 1.0 2.1 2 0 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) Tnp_zf-ribbon_2 PF13842.1 gi|294496164|ref|YP_003542657.1| - 2.3 8.6 6.2 0.56 10.6 1.0 2.1 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-C3HC4_2 PF13923.1 gi|294496164|ref|YP_003542657.1| - 3.5 7.7 8.3 23 5.1 0.1 2.8 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) IBR PF01485.16 gi|294496164|ref|YP_003542657.1| - 5.7 6.8 6.7 1.4 8.8 1.7 2.0 1 1 1 2 2 2 0 IBR domain CMD PF02627.15 gi|294496165|ref|YP_003542658.1| - 5.7e-17 61.3 0.3 6.9e-17 61.0 0.2 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF3666 PF12408.3 gi|294496165|ref|YP_003542658.1| - 0.059 12.4 0.0 0.22 10.6 0.0 1.9 1 0 0 1 1 1 0 Ribose-5-phosphate isomerase SapB_1 PF05184.10 gi|294496165|ref|YP_003542658.1| - 0.16 11.8 5.5 0.35 10.7 0.9 3.1 3 1 0 3 3 3 0 Saposin-like type B, region 1 Cytochrome_C554 PF13435.1 gi|294496166|ref|YP_003542659.1| - 1.8e-15 57.1 4.1 3.5e-13 49.7 0.7 2.2 1 1 1 2 2 2 2 Cytochrome c554 and c-prime Cytochrome_C7 PF14522.1 gi|294496166|ref|YP_003542659.1| - 1.7e-06 27.5 10.5 0.0092 15.5 2.8 3.6 1 1 2 3 3 3 3 Cytochrome c7 Cytochrom_c3_2 PF14537.1 gi|294496166|ref|YP_003542659.1| - 0.00014 22.1 10.6 6.2 7.2 0.3 3.3 1 1 1 2 2 2 2 Cytochrome c3 Cytochrom_C552 PF02335.10 gi|294496166|ref|YP_003542659.1| - 0.086 11.5 13.5 3.3 6.2 9.4 2.5 1 1 0 1 1 1 0 Cytochrome c552 Cytochrom_CIII PF02085.11 gi|294496166|ref|YP_003542659.1| - 0.12 12.4 13.1 3.8 7.6 3.1 3.0 1 1 1 2 2 2 0 Class III cytochrome C family Mut7-C PF01927.11 gi|294496166|ref|YP_003542659.1| - 0.29 11.0 2.0 14 5.6 0.0 3.0 3 0 0 3 3 3 0 Mut7-C RNAse domain Cytochrom_NNT PF03264.9 gi|294496166|ref|YP_003542659.1| - 1.7 8.0 18.2 12 5.2 6.2 3.8 1 1 1 2 2 2 0 NapC/NirT cytochrome c family, N-terminal region Paired_CXXCH_1 PF09699.5 gi|294496166|ref|YP_003542659.1| - 3.5 7.2 15.7 10 5.7 0.0 4.8 3 1 2 5 5 5 0 Doubled CXXCH motif (Paired_CXXCH_1) Fer4 PF00037.22 gi|294496167|ref|YP_003542660.1| - 1.4e-14 52.9 15.2 1.8e-07 30.4 3.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|294496167|ref|YP_003542660.1| - 1.9e-13 49.9 21.2 2.5e-10 39.9 6.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294496167|ref|YP_003542660.1| - 6.6e-13 47.9 13.5 6.2e-07 29.0 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294496167|ref|YP_003542660.1| - 2.3e-12 47.0 7.1 2.9e-12 46.7 4.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294496167|ref|YP_003542660.1| - 6.1e-11 42.4 6.6 8.3e-11 41.9 4.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294496167|ref|YP_003542660.1| - 1.4e-10 40.8 7.0 1.6e-10 40.7 4.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294496167|ref|YP_003542660.1| - 8.4e-10 37.9 12.4 8.7e-05 22.2 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|294496167|ref|YP_003542660.1| - 7.6e-09 36.1 7.1 0.00044 20.9 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|294496167|ref|YP_003542660.1| - 1.7e-07 31.1 6.8 3.7e-07 30.0 4.7 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|294496167|ref|YP_003542660.1| - 3.7e-07 30.6 15.1 5.4e-06 26.8 10.4 2.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|294496167|ref|YP_003542660.1| - 6e-07 29.7 7.6 0.0038 17.5 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294496167|ref|YP_003542660.1| - 1.1e-06 28.5 10.6 0.00063 19.8 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|294496167|ref|YP_003542660.1| - 3.8e-06 27.1 14.2 0.00039 20.7 9.8 2.1 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|294496167|ref|YP_003542660.1| - 4e-06 27.0 8.4 0.0026 18.0 1.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|294496167|ref|YP_003542660.1| - 2.8e-05 24.3 13.8 0.024 15.1 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|294496167|ref|YP_003542660.1| - 0.0011 18.7 2.8 0.0088 15.9 2.0 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|294496167|ref|YP_003542660.1| - 0.11 12.2 5.5 0.47 10.3 3.8 1.9 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Toxin_2 PF00451.14 gi|294496167|ref|YP_003542660.1| - 0.15 12.1 0.3 0.15 12.1 0.2 2.3 2 1 0 2 2 2 0 Scorpion short toxin, BmKK2 AFP PF02420.10 gi|294496167|ref|YP_003542660.1| - 0.98 9.7 7.7 8 6.9 0.1 2.6 2 0 0 2 2 2 0 Insect antifreeze protein repeat Fer4_20 PF14691.1 gi|294496167|ref|YP_003542660.1| - 1.2 8.7 7.1 0.73 9.4 0.9 2.0 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Gamma-thionin PF00304.15 gi|294496167|ref|YP_003542660.1| - 7.5 6.6 7.6 1.1 9.2 0.2 2.1 2 0 0 2 2 2 0 Gamma-thionin family FMN_red PF03358.10 gi|294496168|ref|YP_003542661.1| - 2e-30 105.2 0.0 2.6e-30 104.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|294496168|ref|YP_003542661.1| - 1.1e-07 31.6 0.0 1.6e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold NAD_binding_1 PF00175.16 gi|294496169|ref|YP_003542662.1| - 7e-22 78.0 0.0 1e-21 77.5 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|294496169|ref|YP_003542662.1| - 2.7e-14 53.0 0.0 4.3e-14 52.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|294496169|ref|YP_003542662.1| - 1.6e-06 28.0 0.1 0.00019 21.3 0.0 2.3 1 1 1 2 2 2 2 Ferric reductase NAD binding domain FAD_binding_8 PF08022.7 gi|294496169|ref|YP_003542662.1| - 0.00033 20.4 0.0 0.00082 19.2 0.0 1.7 1 1 0 1 1 1 1 FAD-binding domain Flavoprotein PF02441.14 gi|294496170|ref|YP_003542663.1| - 7.7e-22 77.3 0.0 1.1e-21 76.8 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein NAD_binding_5 PF07994.7 gi|294496172|ref|YP_003542665.1| - 1.6e-60 205.1 0.0 4.3e-60 203.7 0.0 1.6 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|294496172|ref|YP_003542665.1| - 1.1e-34 118.6 0.0 1.9e-34 117.8 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase FA_desaturase PF00487.19 gi|294496173|ref|YP_003542666.1| - 4.1 6.7 10.9 1.8 7.9 6.0 1.4 1 1 0 1 1 1 0 Fatty acid desaturase Exosortase_EpsH PF09721.5 gi|294496174|ref|YP_003542667.1| - 1.1e-12 47.7 8.5 1.6e-12 47.2 5.9 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) Cation_ATPase_C PF00689.16 gi|294496174|ref|YP_003542667.1| - 0.3 10.6 7.8 0.41 10.1 5.4 1.2 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus TRAP_beta PF05753.9 gi|294496175|ref|YP_003542668.1| - 0.045 12.9 0.1 0.081 12.0 0.1 1.3 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) Inhibitor_I42 PF09394.5 gi|294496176|ref|YP_003542669.1| - 7e-18 64.7 21.4 5.7 7.3 0.0 14.6 15 0 0 15 15 15 3 Chagasin family peptidase inhibitor I42 DUF2840 PF11000.3 gi|294496176|ref|YP_003542669.1| - 1.8e-14 53.5 0.0 8.5 5.9 0.0 10.4 12 0 0 12 12 12 4 Protein of unknown function (DUF2840) T2SI PF02501.12 gi|294496176|ref|YP_003542669.1| - 4.5e-14 52.1 6.2 60 3.7 0.0 12.8 13 0 0 13 13 13 0 Type II secretion system (T2SS), protein I Cna_B PF05738.8 gi|294496176|ref|YP_003542669.1| - 1.5e-11 43.8 3.0 1.5e-11 43.8 2.1 8.1 10 0 0 10 10 10 1 Cna protein B-type domain DUF11 PF01345.13 gi|294496176|ref|YP_003542669.1| - 6.2e-05 22.9 156.7 0.0082 16.1 3.6 15.5 14 0 0 14 14 14 6 Domain of unknown function DUF11 RAMP4 PF06624.7 gi|294496176|ref|YP_003542669.1| - 0.00027 20.3 8.4 1.1e+02 2.4 0.0 9.1 11 0 0 11 11 11 0 Ribosome associated membrane protein RAMP4 HTH_3 PF01381.17 gi|294496176|ref|YP_003542669.1| - 0.00043 20.0 0.0 2.3e+02 1.7 0.0 6.6 8 0 0 8 8 8 0 Helix-turn-helix Aminotran_4 PF01063.14 gi|294496176|ref|YP_003542669.1| - 0.015 14.7 9.5 1.3e+02 1.8 0.0 8.1 7 2 4 11 11 11 0 Aminotransferase class IV DUF116 PF01976.12 gi|294496177|ref|YP_003542670.1| - 4.5e-06 26.2 0.2 7.6e-06 25.4 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF116 Gelsolin PF00626.17 gi|294496177|ref|YP_003542670.1| - 0.14 11.8 0.1 0.28 10.9 0.1 1.4 1 0 0 1 1 1 0 Gelsolin repeat Dna2 PF08696.6 gi|294496177|ref|YP_003542670.1| - 0.15 11.3 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 DNA replication factor Dna2 HTH_45 PF14947.1 gi|294496178|ref|YP_003542671.1| - 4.4e-24 84.0 0.9 5.3e-24 83.8 0.6 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix MotA_activ PF09114.5 gi|294496178|ref|YP_003542671.1| - 9.7e-05 22.0 0.1 0.00012 21.7 0.1 1.3 1 0 0 1 1 1 1 Transcription factor MotA, activation domain RNA_pol_Rpc34 PF05158.7 gi|294496178|ref|YP_003542671.1| - 0.047 12.8 0.1 0.058 12.5 0.1 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit Cohesin PF00963.13 gi|294496179|ref|YP_003542672.1| - 0.029 14.2 0.2 4.5 7.1 0.1 2.3 2 0 0 2 2 2 0 Cohesin domain Cadherin-like PF12733.2 gi|294496179|ref|YP_003542672.1| - 0.034 14.4 1.9 0.11 12.8 0.2 2.0 1 1 1 2 2 2 0 Cadherin-like beta sandwich domain SSP160 PF06933.6 gi|294496180|ref|YP_003542673.1| - 2.4 6.0 11.5 3.1 5.6 8.0 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 RAP1 PF07218.6 gi|294496180|ref|YP_003542673.1| - 4.2 5.3 4.6 5.2 5.0 3.2 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) NPCBM_assoc PF10633.4 gi|294496181|ref|YP_003542674.1| - 0.00041 20.3 16.8 0.7 9.9 0.8 5.4 3 3 0 3 3 3 3 NPCBM-associated, NEW3 domain of alpha-galactosidase A2M_N PF01835.14 gi|294496181|ref|YP_003542674.1| - 0.00097 19.3 0.1 13 6.0 0.0 4.2 4 0 0 4 4 4 1 MG2 domain DUF11 PF01345.13 gi|294496181|ref|YP_003542674.1| - 0.0012 18.8 11.1 1.3 9.1 0.2 5.1 4 1 0 4 4 4 3 Domain of unknown function DUF11 Cytomega_UL20A PF05984.7 gi|294496181|ref|YP_003542674.1| - 0.0051 16.9 6.9 0.15 12.2 0.0 4.6 4 1 0 4 4 4 1 Cytomegalovirus UL20A protein MF_alpha_N PF05436.6 gi|294496181|ref|YP_003542674.1| - 0.03 14.0 4.7 30 4.3 0.0 4.3 4 1 0 4 4 4 0 Mating factor alpha precursor N-terminus DUF3625 PF12293.3 gi|294496181|ref|YP_003542674.1| - 0.067 12.3 0.4 11 5.0 0.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3625) EF-hand_5 PF13202.1 gi|294496182|ref|YP_003542675.1| - 0.021 14.1 3.2 0.2 11.0 0.4 3.5 3 0 0 3 3 3 0 EF hand MHC_II_alpha PF00993.15 gi|294496182|ref|YP_003542675.1| - 0.68 9.5 4.3 1.2 8.7 0.1 3.0 3 0 0 3 3 3 0 Class II histocompatibility antigen, alpha domain Nitroreductase PF00881.19 gi|294496183|ref|YP_003542676.1| - 2.7e-33 115.1 0.0 3.2e-33 114.8 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|294496183|ref|YP_003542676.1| - 0.00028 20.1 0.2 0.0022 17.2 0.0 2.3 1 1 2 3 3 3 1 Putative TM nitroreductase AHS1 PF02682.11 gi|294496183|ref|YP_003542676.1| - 0.12 11.8 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Allophanate hydrolase subunit 1 Rubrerythrin PF02915.12 gi|294496184|ref|YP_003542677.1| - 7.4e-14 52.2 8.3 1e-13 51.8 5.7 1.3 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|294496184|ref|YP_003542677.1| - 8.2e-08 32.2 2.4 9.3e-07 28.8 1.6 2.3 1 1 0 1 1 1 1 Ferritin-like domain DUF2202 PF09968.4 gi|294496184|ref|YP_003542677.1| - 0.024 14.3 0.2 2.1 7.9 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein domain (DUF2202) Lactamase_B PF00753.22 gi|294496185|ref|YP_003542678.1| - 6.3e-23 81.4 0.0 9e-23 80.9 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|294496185|ref|YP_003542678.1| - 1.1e-12 48.1 0.0 2.3e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.2 gi|294496185|ref|YP_003542678.1| - 0.0032 17.0 0.0 0.0073 15.8 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_5 PF12724.2 gi|294496185|ref|YP_003542678.1| - 0.018 15.0 0.0 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 Flavodoxin domain TFIID_20kDa PF03847.8 gi|294496185|ref|YP_003542678.1| - 0.022 15.0 0.2 0.062 13.5 0.0 1.8 2 0 0 2 2 2 0 Transcription initiation factor TFIID subunit A Flavodoxin_3 PF12641.2 gi|294496185|ref|YP_003542678.1| - 0.047 13.1 0.0 0.11 11.8 0.0 1.7 1 1 0 1 1 1 0 Flavodoxin domain FeThRed_B PF02943.10 gi|294496186|ref|YP_003542679.1| - 2.2e-15 56.3 2.7 2.5e-15 56.1 1.9 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain FAR1 PF03101.10 gi|294496186|ref|YP_003542679.1| - 1.7 9.1 4.9 2.3 8.7 3.4 1.4 1 1 0 1 1 1 0 FAR1 DNA-binding domain 2-Hacid_dh_C PF02826.14 gi|294496187|ref|YP_003542680.1| - 2.5e-62 209.1 0.1 4e-62 208.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|294496187|ref|YP_003542680.1| - 1e-39 135.0 1.0 1e-39 135.0 0.7 1.9 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|294496187|ref|YP_003542680.1| - 1.1e-05 25.4 1.0 3.7e-05 23.6 0.0 2.3 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|294496187|ref|YP_003542680.1| - 3.7e-05 23.1 0.1 0.00033 20.0 0.0 2.3 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain UDPG_MGDP_dh_C PF03720.10 gi|294496187|ref|YP_003542680.1| - 0.029 14.5 0.1 0.11 12.6 0.0 2.0 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.12 gi|294496187|ref|YP_003542680.1| - 0.061 13.7 1.6 0.44 11.0 0.0 3.0 3 1 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent DUF2240 PF09999.4 gi|294496189|ref|YP_003542682.1| - 1.5e-43 147.6 0.0 1.7e-43 147.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) Ribosomal_L18e PF00828.14 gi|294496190|ref|YP_003542683.1| - 6e-16 58.9 0.3 8.8e-16 58.4 0.1 1.3 1 1 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L13 PF00572.13 gi|294496191|ref|YP_003542684.1| - 5e-24 84.7 0.0 6e-24 84.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|294496192|ref|YP_003542685.1| - 7.5e-35 119.8 0.4 8.5e-35 119.6 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.12 gi|294496193|ref|YP_003542686.1| - 4.2e-29 100.3 0.2 4.5e-29 100.2 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S14 PF00253.16 gi|294496193|ref|YP_003542686.1| - 0.49 9.8 2.2 0.54 9.6 0.0 1.9 2 0 0 2 2 2 0 Ribosomal protein S14p/S29e RNA_pol_Rpb6 PF01192.17 gi|294496194|ref|YP_003542687.1| - 2.5e-16 59.1 0.1 2.8e-16 59.0 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 Ribosomal_S2 PF00318.15 gi|294496195|ref|YP_003542688.1| - 7.6e-40 136.3 0.2 1.3e-20 73.4 0.2 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Memo PF01875.12 gi|294496196|ref|YP_003542689.1| - 1.3e-78 263.7 0.0 1.4e-78 263.5 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|294496196|ref|YP_003542689.1| - 1.2e-08 34.2 0.0 1.9e-08 33.6 0.0 1.4 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Pyr_redox PF00070.22 gi|294496196|ref|YP_003542689.1| - 0.095 13.1 0.1 0.19 12.1 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GHMP_kinases_N PF00288.21 gi|294496197|ref|YP_003542690.1| - 4.6e-19 68.2 2.6 1.5e-18 66.5 1.8 2.0 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|294496197|ref|YP_003542690.1| - 1.8e-13 50.5 1.1 1.8e-13 50.5 0.8 2.3 2 1 1 3 3 3 1 GHMP kinases C terminal AA_kinase PF00696.23 gi|294496198|ref|YP_003542691.1| - 2.3e-36 125.5 0.3 2.7e-36 125.3 0.2 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.13 gi|294496199|ref|YP_003542692.1| - 1.7e-37 129.1 0.0 1.2e-22 80.2 0.0 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|294496199|ref|YP_003542692.1| - 0.0001 21.3 0.8 0.0094 14.8 0.0 2.7 3 0 0 3 3 3 2 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|294496199|ref|YP_003542692.1| - 0.00085 18.5 0.1 0.0023 17.1 0.1 1.7 1 0 0 1 1 1 1 Nitronate monooxygenase Glu_synthase PF01645.12 gi|294496199|ref|YP_003542692.1| - 0.0044 15.9 1.1 0.0085 15.0 0.8 1.5 1 1 0 1 1 1 1 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|294496199|ref|YP_003542692.1| - 0.0082 15.1 1.4 0.028 13.4 0.2 2.2 2 1 1 3 3 3 1 Dihydroorotate dehydrogenase Lactamase_B PF00753.22 gi|294496200|ref|YP_003542693.1| - 2.9e-18 66.2 0.7 6.3e-18 65.1 0.5 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|294496200|ref|YP_003542693.1| - 5.5e-10 39.0 0.7 3.6e-08 33.1 0.1 2.2 1 1 1 2 2 2 2 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|294496200|ref|YP_003542693.1| - 1.2e-08 34.6 0.3 3.4e-08 33.1 0.2 1.7 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase polyprenyl_synt PF00348.12 gi|294496201|ref|YP_003542694.1| - 1.7e-64 217.2 0.1 2e-64 216.9 0.1 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase DUF1131 PF06572.7 gi|294496201|ref|YP_003542694.1| - 0.044 13.2 0.0 0.077 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1131) T2SE PF00437.15 gi|294496202|ref|YP_003542695.1| - 1.8e-40 138.5 0.0 2.6e-40 138.0 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|294496202|ref|YP_003542695.1| - 0.008 15.6 0.0 0.018 14.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|294496202|ref|YP_003542695.1| - 0.17 12.2 1.3 0.23 11.7 0.2 1.8 2 0 0 2 2 2 0 AAA domain T2SF PF00482.18 gi|294496203|ref|YP_003542696.1| - 2e-31 108.4 4.8 9.9e-19 67.4 1.5 3.6 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F DUF1628 PF07790.6 gi|294496204|ref|YP_003542697.1| - 1.2 9.9 4.9 1.2 9.9 1.0 2.9 3 2 0 3 3 3 0 Protein of unknown function (DUF1628) Radical_SAM PF04055.16 gi|294496205|ref|YP_003542698.1| - 1.9e-20 73.7 0.0 1.9e-20 73.7 0.0 2.0 3 0 0 3 3 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|294496205|ref|YP_003542698.1| - 2.9e-06 27.4 0.7 9.8e-06 25.7 0.0 2.2 3 0 0 3 3 3 1 4Fe-4S single cluster domain zinc_ribbon_2 PF13240.1 gi|294496205|ref|YP_003542698.1| - 0.003 16.9 1.7 0.003 16.9 1.2 2.8 2 1 1 3 3 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|294496205|ref|YP_003542698.1| - 0.0039 16.3 4.6 0.0039 16.3 3.2 2.3 2 1 0 2 2 2 1 zinc-ribbon domain Fer4_14 PF13394.1 gi|294496205|ref|YP_003542698.1| - 0.0057 16.6 1.5 0.039 13.9 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain DZR PF12773.2 gi|294496205|ref|YP_003542698.1| - 0.007 16.1 0.1 0.007 16.1 0.1 2.8 3 0 0 3 3 3 1 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|294496205|ref|YP_003542698.1| - 0.0083 15.8 2.2 0.0083 15.8 1.5 2.8 3 1 0 3 3 2 1 RNA polymerases M/15 Kd subunit Hydrolase_like PF13242.1 gi|294496205|ref|YP_003542698.1| - 0.047 13.4 0.0 0.25 11.0 0.0 2.1 2 0 0 2 2 2 0 HAD-hyrolase-like GFA PF04828.9 gi|294496205|ref|YP_003542698.1| - 0.18 11.7 2.8 2.3 8.2 0.0 3.3 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme PyrI_C PF02748.10 gi|294496205|ref|YP_003542698.1| - 0.36 10.2 8.3 6.6 6.2 0.0 3.3 3 0 0 3 3 3 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF1272 PF06906.6 gi|294496205|ref|YP_003542698.1| - 0.44 10.4 9.4 4.5 7.2 0.0 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF1272) Elf1 PF05129.8 gi|294496205|ref|YP_003542698.1| - 1.1 9.0 5.8 9.8 5.9 0.0 3.3 3 0 0 3 3 3 0 Transcription elongation factor Elf1 like NOB1_Zn_bind PF08772.6 gi|294496205|ref|YP_003542698.1| - 3.9 7.3 7.1 0.49 10.2 0.2 2.7 3 0 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zf-BED PF02892.10 gi|294496205|ref|YP_003542698.1| - 4.2 7.2 14.4 4.4 7.1 1.0 3.7 4 0 0 4 4 4 0 BED zinc finger BIR PF00653.16 gi|294496205|ref|YP_003542698.1| - 7.3 7.0 7.4 9.4 6.7 0.2 3.2 3 0 0 3 3 3 0 Inhibitor of Apoptosis domain PAS_9 PF13426.1 gi|294496206|ref|YP_003542699.1| - 1.7e-40 137.6 0.0 2.2e-16 60.0 0.0 5.1 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.6 gi|294496206|ref|YP_003542699.1| - 2.2e-39 133.4 1.2 4.1e-14 52.4 0.0 5.6 6 0 0 6 6 6 3 PAS fold PAS PF00989.19 gi|294496206|ref|YP_003542699.1| - 6.3e-36 122.5 0.0 8.8e-14 51.2 0.0 4.7 4 0 0 4 4 4 4 PAS fold PAS_4 PF08448.5 gi|294496206|ref|YP_003542699.1| - 6.2e-35 119.5 0.0 4.2e-13 49.2 0.0 5.6 5 0 0 5 5 5 4 PAS fold HATPase_c PF02518.21 gi|294496206|ref|YP_003542699.1| - 1.4e-34 118.0 0.1 2.6e-34 117.2 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|294496206|ref|YP_003542699.1| - 5.9e-24 85.2 0.0 1.5e-14 54.7 0.0 2.5 2 0 0 2 2 2 2 GAF domain HisKA PF00512.20 gi|294496206|ref|YP_003542699.1| - 7.8e-20 70.6 0.3 5.8e-19 67.8 0.0 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|294496206|ref|YP_003542699.1| - 6.8e-18 63.8 0.0 9.3e-08 31.6 0.0 4.7 4 0 0 4 4 4 3 PAS domain GAF_3 PF13492.1 gi|294496206|ref|YP_003542699.1| - 3.2e-17 62.8 0.0 3.4e-10 40.1 0.0 2.5 2 0 0 2 2 2 2 GAF domain GAF PF01590.21 gi|294496206|ref|YP_003542699.1| - 2.8e-06 27.5 0.0 0.04 14.0 0.0 2.5 2 0 0 2 2 2 2 GAF domain HATPase_c_5 PF14501.1 gi|294496206|ref|YP_003542699.1| - 0.0005 19.7 0.0 0.0012 18.4 0.0 1.7 1 0 0 1 1 1 1 GHKL domain PAS_7 PF12860.2 gi|294496206|ref|YP_003542699.1| - 0.00074 19.5 0.0 0.009 16.0 0.0 3.0 3 0 0 3 3 3 1 PAS fold HATPase_c_3 PF13589.1 gi|294496206|ref|YP_003542699.1| - 0.00094 18.8 0.2 0.0024 17.5 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PsiE PF06146.7 gi|294496207|ref|YP_003542700.1| - 4.9e-10 39.4 8.6 4.9e-10 39.4 6.0 2.1 2 0 0 2 2 2 1 Phosphate-starvation-inducible E GtrA PF04138.9 gi|294496207|ref|YP_003542700.1| - 0.1 12.5 9.8 0.032 14.1 4.6 1.7 1 1 1 2 2 2 0 GtrA-like protein V_ATPase_I PF01496.14 gi|294496207|ref|YP_003542700.1| - 8.2 4.1 11.1 8.9 4.0 7.7 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FA_hydroxylase PF04116.8 gi|294496207|ref|YP_003542700.1| - 9.2 6.7 8.6 4.2 7.8 4.0 1.9 1 1 1 2 2 2 0 Fatty acid hydroxylase superfamily CMD PF02627.15 gi|294496209|ref|YP_003542702.1| - 2e-15 56.3 0.0 2.3e-15 56.1 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family HTH_20 PF12840.2 gi|294496210|ref|YP_003542703.1| - 8e-07 28.7 0.0 1.2e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|294496210|ref|YP_003542703.1| - 0.0003 20.4 0.1 0.00044 19.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|294496210|ref|YP_003542703.1| - 0.031 14.3 0.5 0.055 13.5 0.1 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF2582 PF10771.4 gi|294496210|ref|YP_003542703.1| - 0.077 12.8 1.2 0.11 12.3 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2582) HTH_24 PF13412.1 gi|294496210|ref|YP_003542703.1| - 0.59 9.5 2.9 0.2 11.0 0.3 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding C1_2 PF03107.11 gi|294496211|ref|YP_003542704.1| - 0.016 15.3 1.8 0.67 10.1 0.1 2.1 2 0 0 2 2 2 0 C1 domain zf-H2C2_2 PF13465.1 gi|294496211|ref|YP_003542704.1| - 0.042 14.1 1.0 0.34 11.3 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_4 PF13717.1 gi|294496211|ref|YP_003542704.1| - 0.063 12.9 3.9 1.2 8.8 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|294496211|ref|YP_003542704.1| - 0.063 12.8 4.1 1.2 8.8 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|294496211|ref|YP_003542704.1| - 0.065 12.9 3.3 0.16 11.7 0.3 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-C2H2 PF00096.21 gi|294496211|ref|YP_003542704.1| - 0.11 12.8 1.1 2.7 8.5 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn_ribbon_recom PF13408.1 gi|294496211|ref|YP_003542704.1| - 0.26 11.5 3.0 14 5.9 2.0 2.1 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain C1_1 PF00130.17 gi|294496211|ref|YP_003542704.1| - 0.27 10.9 2.3 0.37 10.5 0.1 1.9 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2HC_2 PF13913.1 gi|294496211|ref|YP_003542704.1| - 0.28 10.8 2.1 1.4 8.6 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-C4_Topoisom PF01396.14 gi|294496211|ref|YP_003542704.1| - 0.29 10.6 4.7 0.29 10.6 0.6 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Lar_restr_allev PF14354.1 gi|294496211|ref|YP_003542704.1| - 0.33 11.2 2.0 3.1 8.1 0.0 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar Desulfoferrod_N PF06397.7 gi|294496211|ref|YP_003542704.1| - 0.53 9.7 4.2 3.2 7.2 0.1 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-C2H2_6 PF13912.1 gi|294496211|ref|YP_003542704.1| - 0.77 9.7 4.2 3 7.8 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.5 gi|294496211|ref|YP_003542704.1| - 0.77 9.7 2.9 9.3 6.2 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain FpoO PF10621.4 gi|294496211|ref|YP_003542704.1| - 0.81 9.7 2.9 0.55 10.3 0.2 1.8 1 1 1 2 2 2 0 F420H2 dehydrogenase subunit FpoO ADK_lid PF05191.9 gi|294496211|ref|YP_003542704.1| - 0.98 9.1 9.9 21 4.9 6.8 2.3 1 1 0 1 1 1 0 Adenylate kinase, active site lid DUF4428 PF14471.1 gi|294496211|ref|YP_003542704.1| - 1.4 8.7 4.7 0.84 9.4 0.6 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Rad50_zn_hook PF04423.9 gi|294496211|ref|YP_003542704.1| - 2.3 7.7 6.2 0.27 10.7 0.5 1.9 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-CXXC PF02008.15 gi|294496211|ref|YP_003542704.1| - 7.3 6.4 6.7 29 4.5 4.6 1.8 1 1 0 1 1 1 0 CXXC zinc finger domain DUF98 PF01947.11 gi|294496212|ref|YP_003542705.1| - 1.6e-18 66.9 0.0 2.3e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF98) UTRA PF07702.8 gi|294496212|ref|YP_003542705.1| - 2.4e-05 23.9 0.1 3.5e-05 23.4 0.1 1.2 1 0 0 1 1 1 1 UTRA domain Metal_hydrol PF10118.4 gi|294496212|ref|YP_003542705.1| - 0.072 12.5 0.3 0.11 11.8 0.2 1.2 1 0 0 1 1 1 0 Predicted metal-dependent hydrolase Radical_SAM PF04055.16 gi|294496214|ref|YP_003542707.1| - 5.4e-13 49.4 0.0 1e-12 48.5 0.0 1.4 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|294496214|ref|YP_003542707.1| - 2.8e-06 27.4 0.0 4.5e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|294496214|ref|YP_003542707.1| - 6.2e-06 26.2 0.0 1e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain HTH_Mga PF08280.6 gi|294496214|ref|YP_003542707.1| - 0.1 12.3 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain KH_1 PF00013.24 gi|294496215|ref|YP_003542708.1| - 0.009 15.6 0.5 0.026 14.1 0.0 1.8 2 0 0 2 2 2 1 KH domain Mst1_SARAH PF11629.3 gi|294496215|ref|YP_003542708.1| - 0.072 12.9 0.5 0.16 11.8 0.4 1.6 1 0 0 1 1 1 0 C terminal SARAH domain of Mst1 AIRS PF00586.19 gi|294496216|ref|YP_003542709.1| - 8.1e-20 70.8 0.5 8.1e-20 70.8 0.3 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|294496216|ref|YP_003542709.1| - 2.2e-13 50.5 0.0 3.3e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain ALS_ss_C PF10369.4 gi|294496216|ref|YP_003542709.1| - 0.055 13.1 0.4 3.2 7.5 0.0 2.9 3 0 0 3 3 3 0 Small subunit of acetolactate synthase Radical_SAM PF04055.16 gi|294496217|ref|YP_003542710.1| - 3.6e-19 69.5 0.0 5.2e-19 69.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|294496217|ref|YP_003542710.1| - 1.8e-06 27.9 0.1 4.8e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|294496217|ref|YP_003542710.1| - 0.0012 18.9 0.0 0.0027 17.8 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain PTPS PF01242.14 gi|294496218|ref|YP_003542711.1| - 1.2e-29 102.4 0.1 1.4e-29 102.2 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Radical_SAM PF04055.16 gi|294496219|ref|YP_003542712.1| - 4.8e-12 46.3 0.2 8.4e-12 45.5 0.1 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|294496219|ref|YP_003542712.1| - 1.2e-11 44.6 0.0 2.4e-11 43.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|294496219|ref|YP_003542712.1| - 5.1e-06 26.6 0.1 1.3e-05 25.3 0.1 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF366 PF04017.7 gi|294496220|ref|YP_003542713.1| - 8.1e-73 243.5 1.0 9.9e-73 243.3 0.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) QueC PF06508.8 gi|294496221|ref|YP_003542714.1| - 7.4e-55 185.4 0.0 8.4e-55 185.2 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|294496221|ref|YP_003542714.1| - 0.017 14.6 0.1 0.027 13.9 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase Fer2 PF00111.22 gi|294496221|ref|YP_003542714.1| - 0.03 14.0 0.1 0.056 13.2 0.1 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain ATP_bind_3 PF01171.15 gi|294496221|ref|YP_003542714.1| - 0.091 12.2 0.0 0.54 9.7 0.0 1.9 2 0 0 2 2 2 0 PP-loop family HTH_psq PF05225.11 gi|294496221|ref|YP_003542714.1| - 0.11 12.0 0.1 1.1 8.9 0.0 2.5 2 0 0 2 2 2 0 helix-turn-helix, Psq domain ThiI PF02568.9 gi|294496221|ref|YP_003542714.1| - 0.2 11.1 0.9 6.2 6.2 0.0 2.6 2 1 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) Poxvirus PF06227.7 gi|294496222|ref|YP_003542715.1| - 0.0014 18.2 0.3 0.0023 17.4 0.2 1.4 1 0 0 1 1 1 1 dsDNA Poxvirus UPF0193 PF05250.6 gi|294496222|ref|YP_003542715.1| - 0.017 14.6 1.2 0.025 14.1 0.7 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0193) YycH PF07435.6 gi|294496222|ref|YP_003542715.1| - 0.017 13.8 0.9 0.25 9.9 0.0 1.9 1 1 1 2 2 2 0 YycH protein Rubrerythrin PF02915.12 gi|294496222|ref|YP_003542715.1| - 0.038 14.3 1.2 0.074 13.3 0.9 1.4 1 1 0 1 1 1 0 Rubrerythrin DUF4552 PF15089.1 gi|294496222|ref|YP_003542715.1| - 0.052 12.4 0.0 3.2 6.5 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4552) DUF3294 PF07957.6 gi|294496222|ref|YP_003542715.1| - 0.08 12.4 0.8 0.096 12.2 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3294) OCD_Mu_crystall PF02423.10 gi|294496223|ref|YP_003542716.1| - 1e-105 352.9 0.9 1.1e-105 352.8 0.6 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|294496223|ref|YP_003542716.1| - 3.1e-05 24.0 0.0 5.7e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.17 gi|294496223|ref|YP_003542716.1| - 0.00041 20.8 0.0 0.00084 19.8 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.13 gi|294496223|ref|YP_003542716.1| - 0.021 14.8 0.1 0.052 13.5 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain DUF434 PF04256.7 gi|294496224|ref|YP_003542717.1| - 9.5e-20 69.7 0.6 1.4e-19 69.1 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF434) TrkH PF02386.11 gi|294496225|ref|YP_003542718.1| - 1.5e-56 191.5 28.1 1.7e-52 178.1 14.2 2.3 2 0 0 2 2 2 2 Cation transport protein GET2 PF08690.5 gi|294496225|ref|YP_003542718.1| - 0.073 12.2 1.9 0.11 11.6 1.4 1.2 1 0 0 1 1 1 0 GET complex subunit GET2 DUF3566 PF12089.3 gi|294496225|ref|YP_003542718.1| - 0.7 9.9 13.8 1.6 8.7 0.1 3.5 3 1 0 3 3 3 0 Transmembrane domain of unknown function (DUF3566) TrkA_N PF02254.13 gi|294496226|ref|YP_003542719.1| - 7.7e-30 103.2 2.5 8.6e-29 99.8 1.2 2.3 3 0 0 3 3 3 1 TrkA-N domain Shikimate_DH PF01488.15 gi|294496226|ref|YP_003542719.1| - 4.7e-09 36.4 0.6 7.2e-09 35.8 0.4 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase TrkA_C PF02080.16 gi|294496226|ref|YP_003542719.1| - 7e-09 35.1 0.0 5e-08 32.4 0.0 2.4 2 1 1 3 3 3 1 TrkA-C domain F420_oxidored PF03807.12 gi|294496226|ref|YP_003542719.1| - 1.8e-08 34.6 1.1 6e-08 33.0 0.7 1.9 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|294496226|ref|YP_003542719.1| - 5.6e-08 32.9 0.5 1.2e-07 31.8 0.3 1.6 2 0 0 2 2 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|294496226|ref|YP_003542719.1| - 8.5e-06 25.8 0.0 1.1e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_2 PF03446.10 gi|294496226|ref|YP_003542719.1| - 1.4e-05 25.0 0.2 3.7e-05 23.6 0.1 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|294496226|ref|YP_003542719.1| - 1.8e-05 24.4 0.8 3.3e-05 23.6 0.6 1.4 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short PF00106.20 gi|294496226|ref|YP_003542719.1| - 9.6e-05 22.3 0.1 0.00015 21.7 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase ApbA PF02558.11 gi|294496226|ref|YP_003542719.1| - 0.00012 21.5 0.1 0.00018 20.9 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|294496226|ref|YP_003542719.1| - 0.00026 20.8 4.4 0.21 11.4 0.2 3.0 2 1 1 3 3 3 2 ThiF family GFO_IDH_MocA PF01408.17 gi|294496226|ref|YP_003542719.1| - 0.00029 21.3 0.1 0.00064 20.2 0.0 1.6 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|294496226|ref|YP_003542719.1| - 0.00054 19.0 0.1 0.00098 18.2 0.1 1.4 1 1 0 1 1 1 1 Saccharopine dehydrogenase XdhC_C PF13478.1 gi|294496226|ref|YP_003542719.1| - 0.00096 19.4 0.0 0.0039 17.4 0.0 2.0 1 1 1 2 2 2 1 XdhC Rossmann domain Semialdhyde_dh PF01118.19 gi|294496226|ref|YP_003542719.1| - 0.00098 19.4 0.1 0.0032 17.7 0.0 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain NmrA PF05368.8 gi|294496226|ref|YP_003542719.1| - 0.0011 18.2 0.1 0.0018 17.5 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|294496226|ref|YP_003542719.1| - 0.0014 18.0 0.0 0.0019 17.6 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family FAD_binding_3 PF01494.14 gi|294496226|ref|YP_003542719.1| - 0.0024 17.0 0.1 0.0042 16.1 0.1 1.3 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|294496226|ref|YP_003542719.1| - 0.0052 15.3 0.1 0.0063 15.0 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein DAO PF01266.19 gi|294496226|ref|YP_003542719.1| - 0.0059 15.5 0.0 0.0072 15.2 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase DUF2325 PF10087.4 gi|294496226|ref|YP_003542719.1| - 0.0072 16.1 1.5 0.15 11.9 0.2 2.9 2 1 2 4 4 3 2 Uncharacterized protein conserved in bacteria (DUF2325) ADH_zinc_N PF00107.21 gi|294496226|ref|YP_003542719.1| - 0.0082 15.6 0.0 0.29 10.6 0.0 2.2 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Pyr_redox_2 PF07992.9 gi|294496226|ref|YP_003542719.1| - 0.0095 15.8 0.2 0.019 14.8 0.2 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|294496226|ref|YP_003542719.1| - 0.014 15.1 0.1 0.061 13.0 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3Beta_HSD PF01073.14 gi|294496226|ref|YP_003542719.1| - 0.015 14.0 0.1 0.02 13.5 0.1 1.4 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Pyr_redox_3 PF13738.1 gi|294496226|ref|YP_003542719.1| - 0.027 14.5 0.0 0.042 13.9 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|294496226|ref|YP_003542719.1| - 0.029 14.7 0.2 0.087 13.2 0.1 1.9 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase MAF_flag10 PF01973.13 gi|294496226|ref|YP_003542719.1| - 0.031 13.7 0.1 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF115 adh_short_C2 PF13561.1 gi|294496226|ref|YP_003542719.1| - 0.046 13.4 0.1 0.071 12.8 0.1 1.2 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Oxidored_nitro PF00148.14 gi|294496226|ref|YP_003542719.1| - 0.069 11.7 0.0 0.084 11.4 0.0 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|294496226|ref|YP_003542719.1| - 0.076 12.3 0.4 0.13 11.6 0.3 1.5 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KR PF08659.5 gi|294496226|ref|YP_003542719.1| - 0.1 12.2 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 KR domain IlvN PF07991.7 gi|294496226|ref|YP_003542719.1| - 0.14 11.5 0.2 0.23 10.8 0.1 1.6 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain DUF2769 PF10967.3 gi|294496227|ref|YP_003542720.1| - 1.4e-16 60.4 13.5 2e-16 59.9 9.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) Cys_rich_CWC PF14375.1 gi|294496227|ref|YP_003542720.1| - 0.49 10.3 0.1 0.49 10.3 0.1 2.5 2 1 0 2 2 2 0 Cysteine-rich CWC Whib PF02467.11 gi|294496227|ref|YP_003542720.1| - 9.1 6.6 7.2 8.4 6.7 0.2 2.1 1 1 1 2 2 2 0 Transcription factor WhiB Glu_synthase PF01645.12 gi|294496228|ref|YP_003542721.1| - 4.2e-94 315.4 0.1 5.4e-94 315.1 0.1 1.1 1 0 0 1 1 1 1 Conserved region in glutamate synthase Rubredoxin PF00301.15 gi|294496228|ref|YP_003542721.1| - 3.5e-13 49.1 7.3 2.3e-12 46.5 2.7 2.5 2 0 0 2 2 2 1 Rubredoxin FMN_dh PF01070.13 gi|294496228|ref|YP_003542721.1| - 1.8e-08 33.6 0.5 2.2e-06 26.7 0.1 3.0 3 0 0 3 3 3 1 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|294496228|ref|YP_003542721.1| - 1.2e-06 27.6 0.2 2.2e-06 26.8 0.1 1.3 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain Elf1 PF05129.8 gi|294496228|ref|YP_003542721.1| - 0.00025 20.6 1.7 0.00035 20.1 0.0 2.1 2 0 0 2 2 2 1 Transcription elongation factor Elf1 like Cys_rich_KTR PF14205.1 gi|294496228|ref|YP_003542721.1| - 0.002 17.5 3.3 0.085 12.3 0.0 3.0 2 1 0 2 2 2 1 Cysteine-rich KTR Ribul_P_3_epim PF00834.14 gi|294496228|ref|YP_003542721.1| - 0.0094 15.0 0.1 1.5 7.8 0.0 2.3 2 0 0 2 2 2 1 Ribulose-phosphate 3 epimerase family NMO PF03060.10 gi|294496228|ref|YP_003542721.1| - 0.0095 15.1 2.1 0.036 13.2 0.9 2.1 1 1 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|294496228|ref|YP_003542721.1| - 0.019 14.2 0.0 0.031 13.5 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein zf-C2H2_4 PF13894.1 gi|294496228|ref|YP_003542721.1| - 0.02 15.2 0.5 22 5.6 0.0 3.9 3 1 0 3 3 3 0 C2H2-type zinc finger ThiG PF05690.9 gi|294496228|ref|YP_003542721.1| - 0.025 13.6 0.1 0.041 12.9 0.0 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG zf-ribbon_3 PF13248.1 gi|294496228|ref|YP_003542721.1| - 0.036 13.2 0.7 0.2 10.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|294496228|ref|YP_003542721.1| - 0.037 14.3 0.3 0.11 12.8 0.2 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.1 gi|294496228|ref|YP_003542721.1| - 0.18 11.3 0.1 0.18 11.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF164 PF02591.10 gi|294496228|ref|YP_003542721.1| - 0.86 9.4 6.5 0.13 12.0 0.7 2.4 3 0 0 3 3 3 0 Putative zinc ribbon domain zf-Di19 PF05605.7 gi|294496228|ref|YP_003542721.1| - 2 8.6 6.0 4.3 7.5 2.7 2.6 2 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Zn-ribbon_8 PF09723.5 gi|294496228|ref|YP_003542721.1| - 5.5 7.0 11.2 2.5 8.1 2.1 3.3 2 1 1 3 3 3 0 Zinc ribbon domain RimK PF08443.6 gi|294496229|ref|YP_003542722.1| - 1.7e-37 128.7 0.0 3.8e-37 127.6 0.0 1.6 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|294496229|ref|YP_003542722.1| - 7.5e-14 51.1 0.0 1e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon GSH-S_ATP PF02955.11 gi|294496229|ref|YP_003542722.1| - 1.7e-13 50.1 0.0 4.1e-13 48.8 0.0 1.6 1 1 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|294496229|ref|YP_003542722.1| - 8.3e-13 48.4 0.0 1.1e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|294496229|ref|YP_003542722.1| - 1.7e-08 34.5 0.0 6.9e-08 32.5 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain CP_ATPgrasp_1 PF04174.8 gi|294496229|ref|YP_003542722.1| - 0.017 13.7 0.0 1.7 7.2 0.0 2.2 2 0 0 2 2 2 0 A circularly permuted ATPgrasp ATPgrasp_YheCD PF14398.1 gi|294496229|ref|YP_003542722.1| - 0.024 13.4 0.0 0.048 12.4 0.0 1.6 1 0 0 1 1 1 0 YheC/D like ATP-grasp PTH2 PF01981.11 gi|294496230|ref|YP_003542723.1| - 2.5e-42 143.2 0.2 2.8e-42 143.0 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Transglut_core PF01841.14 gi|294496231|ref|YP_003542724.1| - 0.00014 22.0 0.0 0.00028 21.0 0.0 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily HEAT_2 PF13646.1 gi|294496231|ref|YP_003542724.1| - 0.059 13.6 0.0 0.16 12.2 0.0 1.7 2 0 0 2 2 2 0 HEAT repeats TruD PF01142.13 gi|294496232|ref|YP_003542725.1| - 1.2e-108 363.1 0.0 1.4e-108 362.9 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) CTP_synth_N PF06418.9 gi|294496233|ref|YP_003542726.1| - 1.6e-127 424.3 0.3 2.4e-127 423.7 0.2 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|294496233|ref|YP_003542726.1| - 2.1e-51 174.1 0.0 4.6e-51 173.0 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CbiA PF01656.18 gi|294496233|ref|YP_003542726.1| - 1.9e-09 37.2 0.0 3.1e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_C26 PF07722.8 gi|294496233|ref|YP_003542726.1| - 5.1e-09 35.8 0.0 1.9e-08 34.0 0.0 1.9 1 1 0 1 1 1 1 Peptidase C26 IU_nuc_hydro PF01156.14 gi|294496233|ref|YP_003542726.1| - 0.0023 17.2 0.0 0.0038 16.4 0.0 1.3 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase Transket_pyr PF02779.19 gi|294496233|ref|YP_003542726.1| - 0.065 12.7 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 Transketolase, pyrimidine binding domain ArgK PF03308.11 gi|294496233|ref|YP_003542726.1| - 0.11 11.2 0.3 0.26 10.0 0.2 1.6 1 0 0 1 1 1 0 ArgK protein GtrA PF04138.9 gi|294496234|ref|YP_003542727.1| - 0.25 11.2 5.0 0.43 10.5 3.4 1.4 1 0 0 1 1 1 0 GtrA-like protein Trm112p PF03966.11 gi|294496235|ref|YP_003542728.1| - 8e-10 38.9 1.4 2.5e-09 37.3 1.0 1.7 1 1 0 1 1 1 1 Trm112p-like protein Lar_restr_allev PF14354.1 gi|294496235|ref|YP_003542728.1| - 0.0011 19.2 0.1 0.0013 18.9 0.1 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Prim_Zn_Ribbon PF08273.7 gi|294496235|ref|YP_003542728.1| - 0.0015 18.5 0.0 0.0021 18.1 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase Elf1 PF05129.8 gi|294496235|ref|YP_003542728.1| - 0.004 16.8 0.0 0.0042 16.7 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like CK_II_beta PF01214.13 gi|294496235|ref|YP_003542728.1| - 0.064 12.7 0.2 0.065 12.7 0.1 1.0 1 0 0 1 1 1 0 Casein kinase II regulatory subunit Cys_rich_KTR PF14205.1 gi|294496235|ref|YP_003542728.1| - 0.12 11.8 0.3 0.29 10.5 0.2 1.6 1 1 0 1 1 1 0 Cysteine-rich KTR zf-dskA_traR PF01258.12 gi|294496235|ref|YP_003542728.1| - 0.21 11.3 0.2 0.21 11.3 0.2 1.9 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Gate PF07670.9 gi|294496236|ref|YP_003542729.1| - 8.6e-06 25.6 22.5 0.00013 21.8 1.3 3.2 2 2 1 3 3 3 2 Nucleoside recognition FpoO PF10621.4 gi|294496237|ref|YP_003542730.1| - 3.1e-42 143.3 5.9 3.5e-42 143.2 4.1 1.0 1 0 0 1 1 1 1 F420H2 dehydrogenase subunit FpoO Fer4_9 PF13187.1 gi|294496237|ref|YP_003542730.1| - 0.15 12.3 16.2 28 5.0 0.8 3.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Oxidored_q1 PF00361.15 gi|294496238|ref|YP_003542731.1| - 1.9e-66 224.1 20.8 1.9e-66 224.1 14.4 2.8 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|294496238|ref|YP_003542731.1| - 0.037 13.5 2.0 0.14 11.7 1.4 2.1 1 0 0 1 1 1 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Tmemb_18A PF09771.4 gi|294496238|ref|YP_003542731.1| - 3 7.8 12.5 1.3 8.9 1.2 3.4 3 0 0 3 3 3 0 Transmembrane protein 188 Oxidored_q1 PF00361.15 gi|294496239|ref|YP_003542732.1| - 2.2e-61 207.4 29.7 2.2e-61 207.4 20.6 2.3 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|294496240|ref|YP_003542733.1| - 2.9e-75 253.0 16.8 2.9e-75 253.0 11.7 3.1 3 1 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|294496240|ref|YP_003542733.1| - 8.7e-15 54.0 1.5 8.7e-15 54.0 1.0 3.2 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1_C PF01010.14 gi|294496240|ref|YP_003542733.1| - 3e-06 26.9 1.6 8e-06 25.5 1.1 1.7 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus Oxidored_q2 PF00420.19 gi|294496241|ref|YP_003542734.1| - 8.2e-28 95.8 4.0 9e-28 95.7 2.8 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ACT_7 PF13840.1 gi|294496241|ref|YP_003542734.1| - 0.12 11.8 0.1 0.37 10.3 0.1 1.8 1 1 0 1 1 1 0 ACT domain DUF2484 PF10658.4 gi|294496241|ref|YP_003542734.1| - 0.31 11.1 1.8 4.3 7.5 0.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2484) Oxidored_q3 PF00499.15 gi|294496242|ref|YP_003542735.1| - 0.00061 19.5 0.6 0.00065 19.4 0.4 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Yip1 PF04893.12 gi|294496242|ref|YP_003542735.1| - 0.047 13.1 0.4 0.058 12.8 0.3 1.1 1 0 0 1 1 1 0 Yip1 domain DUF1467 PF07330.7 gi|294496242|ref|YP_003542735.1| - 0.078 12.7 0.1 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1467) Oxidored_q3 PF00499.15 gi|294496243|ref|YP_003542736.1| - 6.2e-16 58.4 9.4 6.2e-16 58.4 6.5 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF2109 PF09882.4 gi|294496243|ref|YP_003542736.1| - 0.42 10.5 11.4 0.35 10.8 5.0 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2109) DUF4040 PF13244.1 gi|294496243|ref|YP_003542736.1| - 0.81 9.7 18.0 0.24 11.3 10.2 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4040) DUF998 PF06197.8 gi|294496243|ref|YP_003542736.1| - 4.6 6.4 17.3 5.3 6.3 12.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF998) Fer4 PF00037.22 gi|294496244|ref|YP_003542737.1| - 1.2e-12 46.7 15.0 1.8e-06 27.2 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|294496244|ref|YP_003542737.1| - 4.5e-10 39.1 19.6 9.3e-08 31.7 8.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294496244|ref|YP_003542737.1| - 1.4e-09 37.2 11.3 7.6e-05 22.3 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294496244|ref|YP_003542737.1| - 2.5e-09 37.3 11.4 3.8e-09 36.7 7.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294496244|ref|YP_003542737.1| - 3.4e-09 36.8 10.4 5.4e-09 36.1 7.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294496244|ref|YP_003542737.1| - 2e-08 34.1 9.4 2.9e-08 33.5 6.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294496244|ref|YP_003542737.1| - 8.3e-08 32.8 7.9 0.002 18.8 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|294496244|ref|YP_003542737.1| - 2.3e-07 30.5 10.0 3.6e-07 29.9 6.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294496244|ref|YP_003542737.1| - 1.4e-05 25.3 11.0 0.0014 19.0 1.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294496244|ref|YP_003542737.1| - 1.5e-05 24.6 15.3 0.00042 20.0 4.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|294496244|ref|YP_003542737.1| - 2e-05 24.8 9.5 6.9e-05 23.1 6.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294496244|ref|YP_003542737.1| - 3e-05 23.9 13.0 0.013 15.7 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|294496244|ref|YP_003542737.1| - 0.0004 20.9 9.0 0.0019 18.7 1.5 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|294496244|ref|YP_003542737.1| - 0.0031 17.9 20.6 0.0072 16.8 1.8 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|294496244|ref|YP_003542737.1| - 0.021 15.2 5.6 0.021 15.2 3.9 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain NADHdh PF00146.16 gi|294496245|ref|YP_003542738.1| - 3.9e-91 305.3 17.2 4.8e-91 305.0 11.9 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.14 gi|294496246|ref|YP_003542739.1| - 2.1e-64 217.1 0.0 1.7e-61 207.6 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|294496246|ref|YP_003542739.1| - 5.8e-05 22.0 0.0 9.1e-05 21.4 0.0 1.3 1 0 0 1 1 1 1 Nickel-dependent hydrogenase Complex1_30kDa PF00329.14 gi|294496247|ref|YP_003542740.1| - 1.2e-32 112.2 0.1 2.3e-32 111.2 0.0 1.5 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RNase_H_2 PF13482.1 gi|294496247|ref|YP_003542740.1| - 0.01 15.6 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 0 RNase_H superfamily Oxidored_q6 PF01058.17 gi|294496248|ref|YP_003542741.1| - 1.5e-22 79.6 0.0 2.3e-22 79.0 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit RE_NgoFVII PF09565.5 gi|294496248|ref|YP_003542741.1| - 0.0027 16.7 0.1 0.049 12.5 0.0 2.0 2 0 0 2 2 2 1 NgoFVII restriction endonuclease Oxidored_q4 PF00507.14 gi|294496249|ref|YP_003542742.1| - 1.7e-25 88.7 5.1 2.3e-25 88.3 3.3 1.4 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 EpsG PF14897.1 gi|294496249|ref|YP_003542742.1| - 0.058 12.3 7.5 0.13 11.1 5.0 1.6 1 1 0 1 1 1 0 EpsG family TF_Zn_Ribbon PF08271.7 gi|294496250|ref|YP_003542743.1| - 9.3e-05 21.6 9.2 0.31 10.3 0.0 3.6 3 0 0 3 3 3 3 TFIIB zinc-binding DUF4441 PF14536.1 gi|294496250|ref|YP_003542743.1| - 0.0057 16.6 0.2 0.012 15.5 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4441) Lar_restr_allev PF14354.1 gi|294496250|ref|YP_003542743.1| - 0.024 14.9 0.3 0.024 14.9 0.2 2.8 2 1 0 2 2 2 0 Restriction alleviation protein Lar zf-Di19 PF05605.7 gi|294496250|ref|YP_003542743.1| - 0.044 13.9 2.0 6.5 6.9 0.0 2.6 2 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-ribbon_3 PF13248.1 gi|294496250|ref|YP_003542743.1| - 0.051 12.7 10.0 0.49 9.6 0.0 3.7 4 0 0 4 4 4 0 zinc-ribbon domain Ribosomal_S17 PF00366.15 gi|294496250|ref|YP_003542743.1| - 0.085 12.9 0.9 0.27 11.2 0.3 2.1 2 0 0 2 2 2 0 Ribosomal protein S17 DUF35_N PF12172.3 gi|294496250|ref|YP_003542743.1| - 0.12 12.3 1.6 9 6.3 0.1 2.9 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-piccolo PF05715.8 gi|294496250|ref|YP_003542743.1| - 0.31 11.0 3.9 0.68 9.9 0.3 2.6 2 1 0 2 2 2 0 Piccolo Zn-finger YhfH PF14149.1 gi|294496250|ref|YP_003542743.1| - 0.53 10.1 9.8 23 4.9 0.2 3.8 3 0 0 3 3 3 0 YhfH-like protein A2L_zn_ribbon PF08792.5 gi|294496250|ref|YP_003542743.1| - 0.55 9.7 0.1 0.55 9.7 0.1 4.1 5 0 0 5 5 4 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|294496250|ref|YP_003542743.1| - 0.64 9.7 5.3 24 4.6 0.4 3.4 3 0 0 3 3 3 0 Putative transposase DNA-binding domain DUF2072 PF09845.4 gi|294496250|ref|YP_003542743.1| - 0.84 9.5 5.4 7.2 6.5 0.3 2.8 2 1 0 2 2 2 0 Zn-ribbon containing protein (DUF2072) zf-dskA_traR PF01258.12 gi|294496250|ref|YP_003542743.1| - 1 9.1 12.2 3 7.6 0.2 4.0 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger DZR PF12773.2 gi|294496250|ref|YP_003542743.1| - 2.4 8.0 9.8 0.34 10.7 0.3 3.0 2 2 0 2 2 2 0 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|294496250|ref|YP_003542743.1| - 2.9 7.7 0.0 2.9 7.7 0.0 3.3 3 1 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-TFIIB PF13453.1 gi|294496250|ref|YP_003542743.1| - 3.2 7.0 5.4 2.8 7.1 0.2 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger Arc_trans_TRASH PF08394.5 gi|294496250|ref|YP_003542743.1| - 3.3 7.9 9.0 0.35 11.0 0.4 3.2 3 0 0 3 3 3 0 Archaeal TRASH domain Zn-ribbon_8 PF09723.5 gi|294496250|ref|YP_003542743.1| - 5 7.1 8.0 8.9 6.3 0.0 3.8 4 1 0 4 4 3 0 Zinc ribbon domain eIF-5_eIF-2B PF01873.12 gi|294496250|ref|YP_003542743.1| - 6.5 6.4 7.6 0.39 10.3 0.4 2.4 1 1 1 3 3 3 0 Domain found in IF2B/IF5 Cys_rich_CPCC PF14206.1 gi|294496250|ref|YP_003542743.1| - 8.4 6.0 7.7 8.7 5.9 0.9 2.7 2 0 0 2 2 2 0 Cysteine-rich CPCC DUF22 PF01629.11 gi|294496251|ref|YP_003542744.1| - 9.5e-31 105.6 0.2 1.2e-30 105.2 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF22 Fer4 PF00037.22 gi|294496252|ref|YP_003542745.1| - 3.4e-13 48.5 13.4 6.9e-07 28.6 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|294496252|ref|YP_003542745.1| - 1.1e-08 34.8 10.8 1.4e-08 34.4 7.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294496252|ref|YP_003542745.1| - 1.1e-08 34.7 14.8 0.00012 22.1 2.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|294496252|ref|YP_003542745.1| - 2.4e-08 33.6 23.7 3.1e-06 26.8 9.4 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294496252|ref|YP_003542745.1| - 2.4e-08 34.2 26.2 1.8e-06 28.2 10.2 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294496252|ref|YP_003542745.1| - 3e-08 33.7 12.5 0.0001 22.5 2.4 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294496252|ref|YP_003542745.1| - 4.8e-07 29.3 12.7 0.0017 18.1 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294496252|ref|YP_003542745.1| - 5.9e-07 29.0 12.5 0.00064 19.4 1.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|294496252|ref|YP_003542745.1| - 5.9e-06 26.9 12.4 0.0028 18.3 2.2 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|294496252|ref|YP_003542745.1| - 6.7e-05 22.8 13.8 0.002 18.1 9.6 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294496252|ref|YP_003542745.1| - 0.00033 21.0 15.0 0.005 17.2 3.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|294496252|ref|YP_003542745.1| - 0.00039 20.7 14.4 0.046 14.0 2.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|294496252|ref|YP_003542745.1| - 0.007 16.7 11.4 0.34 11.3 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|294496252|ref|YP_003542745.1| - 0.056 14.0 16.6 0.18 12.4 3.2 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|294496252|ref|YP_003542745.1| - 0.47 11.0 14.7 0.47 11.0 2.5 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain zf-Paramyx-P PF13008.2 gi|294496252|ref|YP_003542745.1| - 5 6.3 10.7 2.7 7.2 1.6 2.1 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein zf-CXXC PF02008.15 gi|294496252|ref|YP_003542745.1| - 6.5 6.6 11.5 9.6 6.1 2.3 2.2 2 0 0 2 2 2 0 CXXC zinc finger domain MTHFR_C PF12225.3 gi|294496252|ref|YP_003542745.1| - 8.5 5.9 11.5 3.2 7.3 1.5 2.1 1 1 1 2 2 2 0 Methylene-tetrahydrofolate reductase C terminal NAD_binding_8 PF13450.1 gi|294496253|ref|YP_003542746.1| - 4e-11 42.7 0.2 1.2e-10 41.2 0.1 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|294496253|ref|YP_003542746.1| - 9.9e-07 27.9 0.3 0.016 14.1 0.0 2.8 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|294496253|ref|YP_003542746.1| - 1.5e-06 27.3 0.1 0.0017 17.2 0.1 2.5 3 0 0 3 3 3 2 FAD binding domain Amino_oxidase PF01593.19 gi|294496253|ref|YP_003542746.1| - 9e-05 21.7 0.0 0.00019 20.6 0.0 1.6 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase HI0933_like PF03486.9 gi|294496253|ref|YP_003542746.1| - 0.0014 17.1 0.5 0.025 13.0 0.2 2.4 2 1 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|294496253|ref|YP_003542746.1| - 0.028 14.3 1.0 0.11 12.3 0.1 2.2 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|294496253|ref|YP_003542746.1| - 0.075 11.8 1.0 0.92 8.3 0.1 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|294496253|ref|YP_003542746.1| - 0.097 13.0 2.6 4.6 7.7 0.2 3.3 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.13 gi|294496253|ref|YP_003542746.1| - 0.12 10.6 0.0 0.2 9.9 0.0 1.3 1 0 0 1 1 1 0 GDP dissociation inhibitor FAD_binding_3 PF01494.14 gi|294496253|ref|YP_003542746.1| - 0.2 10.6 0.5 0.32 9.9 0.4 1.3 1 0 0 1 1 1 0 FAD binding domain DUF342 PF03961.8 gi|294496254|ref|YP_003542747.1| - 0.00018 20.0 9.2 0.00028 19.4 6.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF342) YbhQ PF11076.3 gi|294496254|ref|YP_003542747.1| - 0.065 12.8 4.5 0.13 11.8 3.1 1.5 1 0 0 1 1 1 0 Putative inner membrane protein YbhQ CHD5 PF04420.9 gi|294496254|ref|YP_003542747.1| - 0.25 11.0 0.1 0.25 11.0 0.1 1.6 2 0 0 2 2 2 0 CHD5-like protein TrbL PF04610.9 gi|294496254|ref|YP_003542747.1| - 1.1 8.9 17.5 6.5 6.3 0.0 2.5 1 1 1 2 2 2 0 TrbL/VirB6 plasmid conjugal transfer protein Maf PF02545.9 gi|294496255|ref|YP_003542748.1| - 2.7e-54 183.2 0.0 3.3e-54 182.9 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein Radical_SAM PF04055.16 gi|294496256|ref|YP_003542749.1| - 1.9e-10 41.1 0.4 8.7e-10 39.0 0.2 2.1 2 1 0 2 2 2 1 Radical SAM superfamily BATS PF06968.8 gi|294496256|ref|YP_003542749.1| - 0.034 13.9 0.1 0.098 12.5 0.1 1.8 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain PTH2 PF01981.11 gi|294496256|ref|YP_003542749.1| - 0.17 11.5 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 Peptidyl-tRNA hydrolase PTH2 Radical_SAM PF04055.16 gi|294496257|ref|YP_003542750.1| - 4.8e-14 52.8 0.2 8.1e-14 52.1 0.2 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|294496258|ref|YP_003542751.1| - 3.6e-17 63.0 0.2 5.2e-17 62.5 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|294496258|ref|YP_003542751.1| - 0.0082 16.1 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain CofC PF01983.11 gi|294496259|ref|YP_003542752.1| - 7.6e-49 165.6 0.5 9e-49 165.3 0.3 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|294496259|ref|YP_003542752.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.3 1 1 0 1 1 1 0 MobA-like NTP transferase domain CutA1 PF03091.10 gi|294496260|ref|YP_003542753.1| - 4.8e-29 100.0 0.2 5.3e-29 99.8 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein FAD_binding_3 PF01494.14 gi|294496261|ref|YP_003542754.1| - 2.7e-16 59.5 0.3 2.1e-08 33.6 0.0 3.0 3 0 0 3 3 3 3 FAD binding domain FAD_oxidored PF12831.2 gi|294496261|ref|YP_003542754.1| - 7.7e-12 45.0 1.5 1.4e-11 44.1 0.7 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|294496261|ref|YP_003542754.1| - 1e-11 44.3 1.5 9.6e-07 27.9 0.1 2.5 2 1 0 3 3 3 2 FAD binding domain DAO PF01266.19 gi|294496261|ref|YP_003542754.1| - 4.3e-09 35.7 1.2 0.00019 20.4 0.3 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|294496261|ref|YP_003542754.1| - 1.8e-07 30.4 0.0 1.5e-05 24.1 0.0 2.2 2 1 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|294496261|ref|YP_003542754.1| - 2.4e-07 30.8 1.1 8.9e-07 28.9 0.8 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|294496261|ref|YP_003542754.1| - 4e-07 28.8 0.3 2.3e-06 26.3 0.0 2.2 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|294496261|ref|YP_003542754.1| - 7.5e-06 25.8 0.2 2.2e-05 24.4 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|294496261|ref|YP_003542754.1| - 0.0002 20.3 1.3 0.00047 19.1 0.9 1.6 1 1 0 1 1 1 1 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|294496261|ref|YP_003542754.1| - 0.00074 18.2 0.0 0.53 8.8 0.1 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.12 gi|294496261|ref|YP_003542754.1| - 0.00098 18.2 0.2 0.0072 15.4 0.1 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|294496261|ref|YP_003542754.1| - 0.0057 17.0 3.3 0.014 15.8 0.1 2.7 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.5 gi|294496261|ref|YP_003542754.1| - 0.025 13.4 0.0 0.05 12.4 0.0 1.4 1 0 0 1 1 1 0 Squalene epoxidase Pyr_redox_3 PF13738.1 gi|294496261|ref|YP_003542754.1| - 0.027 14.5 0.0 0.059 13.4 0.0 1.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|294496262|ref|YP_003542755.1| - 1.4e-44 150.8 5.3 4.6e-23 81.4 0.1 2.3 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|294496262|ref|YP_003542755.1| - 2.2e-32 110.4 0.1 1.2e-15 56.8 0.0 2.7 2 0 0 2 2 2 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|294496262|ref|YP_003542755.1| - 1.9e-09 37.6 3.0 0.00016 21.8 0.1 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|294496262|ref|YP_003542755.1| - 3.5e-06 27.1 1.9 0.0018 18.4 0.0 2.5 2 1 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|294496262|ref|YP_003542755.1| - 5.7e-06 26.1 0.1 0.037 13.7 0.0 2.4 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.22 gi|294496262|ref|YP_003542755.1| - 6.2e-06 26.5 1.3 0.0013 19.1 0.1 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|294496262|ref|YP_003542755.1| - 6.3e-06 26.2 0.3 0.099 12.5 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|294496262|ref|YP_003542755.1| - 0.00018 21.2 1.7 0.13 11.9 0.1 2.8 2 1 1 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|294496262|ref|YP_003542755.1| - 0.00028 20.9 2.5 0.36 10.8 0.0 2.6 3 0 0 3 3 3 2 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|294496262|ref|YP_003542755.1| - 0.00043 19.8 0.2 0.019 14.5 0.1 2.7 2 1 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|294496262|ref|YP_003542755.1| - 0.00053 19.4 1.6 0.079 12.3 0.1 3.1 2 1 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.14 gi|294496262|ref|YP_003542755.1| - 0.0006 18.9 0.1 0.0083 15.2 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain F420_oxidored PF03807.12 gi|294496262|ref|YP_003542755.1| - 0.002 18.5 4.8 0.9 10.0 0.1 3.4 5 0 0 5 5 3 2 NADP oxidoreductase coenzyme F420-dependent NAD_binding_8 PF13450.1 gi|294496262|ref|YP_003542755.1| - 0.0021 18.0 0.1 0.0098 15.8 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|294496262|ref|YP_003542755.1| - 0.0067 15.3 0.1 0.081 11.8 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase ThiF PF00899.16 gi|294496262|ref|YP_003542755.1| - 0.0081 15.9 4.2 0.87 9.4 0.0 3.4 2 1 1 3 3 3 1 ThiF family HI0933_like PF03486.9 gi|294496262|ref|YP_003542755.1| - 0.0082 14.6 0.1 0.091 11.2 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Saccharop_dh PF03435.13 gi|294496262|ref|YP_003542755.1| - 0.0089 15.0 6.9 0.18 10.7 0.8 2.6 3 0 0 3 3 3 2 Saccharopine dehydrogenase Lycopene_cycl PF05834.7 gi|294496262|ref|YP_003542755.1| - 0.009 14.9 0.1 0.6 8.9 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein ApbA PF02558.11 gi|294496262|ref|YP_003542755.1| - 0.0092 15.4 0.3 1.1 8.7 0.0 2.4 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.1 gi|294496262|ref|YP_003542755.1| - 0.022 15.0 0.2 0.73 10.1 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|294496262|ref|YP_003542755.1| - 0.055 12.6 0.3 2.7 7.1 0.1 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|294496262|ref|YP_003542755.1| - 0.13 12.0 0.0 0.98 9.1 0.0 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding NmrA PF05368.8 gi|294496262|ref|YP_003542755.1| - 0.26 10.4 2.7 1.5 8.0 0.3 2.2 2 0 0 2 2 2 0 NmrA-like family CTDII PF01556.13 gi|294496263|ref|YP_003542756.1| - 7.9e-34 115.4 2.5 3.9e-24 84.3 0.2 3.3 3 0 0 3 3 3 3 DnaJ C terminal domain DnaJ PF00226.26 gi|294496263|ref|YP_003542756.1| - 3e-29 100.5 6.1 5.5e-29 99.6 4.3 1.5 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|294496263|ref|YP_003542756.1| - 8e-16 57.8 16.2 1.4e-15 57.0 11.2 1.4 1 0 0 1 1 1 1 DnaJ central domain Toxin_63 PF15541.1 gi|294496263|ref|YP_003542756.1| - 0.054 13.4 0.3 0.22 11.4 0.0 2.1 2 0 0 2 2 2 0 Putative toxin 63 DZR PF12773.2 gi|294496263|ref|YP_003542756.1| - 1.8 8.4 12.9 1.6e+02 2.2 9.0 2.3 1 1 0 1 1 1 0 Double zinc ribbon FdhE PF04216.7 gi|294496263|ref|YP_003542756.1| - 8.9 5.9 5.6 9.7 5.8 2.1 2.1 2 1 1 3 3 3 0 Protein involved in formate dehydrogenase formation HSP70 PF00012.15 gi|294496264|ref|YP_003542757.1| - 9.7e-250 829.6 19.0 4.6e-221 734.9 9.3 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.8 gi|294496264|ref|YP_003542757.1| - 3e-18 65.5 3.5 6.4e-18 64.4 2.4 1.5 1 1 0 1 1 1 1 MreB/Mbl protein FGGY_C PF02782.11 gi|294496264|ref|YP_003542757.1| - 0.0017 17.9 0.0 0.0047 16.5 0.0 1.7 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain Hydantoinase_A PF01968.13 gi|294496264|ref|YP_003542757.1| - 0.048 12.7 0.1 0.048 12.7 0.1 3.5 4 1 0 4 4 4 0 Hydantoinase/oxoprolinase FtsA PF14450.1 gi|294496264|ref|YP_003542757.1| - 0.06 13.1 12.4 7.9 6.3 3.8 5.0 2 1 0 2 2 2 0 Cell division protein FtsA Vfa1 PF08432.5 gi|294496264|ref|YP_003542757.1| - 5.4 7.0 9.7 11 6.0 6.7 1.5 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 GrpE PF01025.14 gi|294496265|ref|YP_003542758.1| - 4.4e-59 198.7 7.0 5e-59 198.5 4.8 1.0 1 0 0 1 1 1 1 GrpE HrpB7 PF09486.5 gi|294496265|ref|YP_003542758.1| - 0.011 15.6 0.5 0.02 14.8 0.3 1.4 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) Med9 PF07544.8 gi|294496265|ref|YP_003542758.1| - 0.021 14.5 0.6 0.039 13.6 0.4 1.5 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Metallophos_3 PF14582.1 gi|294496265|ref|YP_003542758.1| - 0.035 13.2 1.2 0.05 12.7 0.8 1.2 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily OmpH PF03938.9 gi|294496265|ref|YP_003542758.1| - 0.06 13.2 0.9 0.08 12.8 0.6 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) BAR_2 PF10455.4 gi|294496265|ref|YP_003542758.1| - 0.11 11.4 3.2 0.13 11.1 2.2 1.2 1 0 0 1 1 1 0 Bin/amphiphysin/Rvs domain for vesicular trafficking DUF1616 PF07760.6 gi|294496266|ref|YP_003542759.1| - 0.073 12.1 6.8 0.079 12.0 4.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) Acyl_transf_3 PF01757.17 gi|294496266|ref|YP_003542759.1| - 0.13 11.0 10.6 0.16 10.7 7.4 1.0 1 0 0 1 1 1 0 Acyltransferase family DUF4131 PF13567.1 gi|294496266|ref|YP_003542759.1| - 2.2 7.6 6.3 1.6 8.0 2.9 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3021 PF11457.3 gi|294496266|ref|YP_003542759.1| - 5.4 6.9 14.3 0.87 9.4 2.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3021) DUF3784 PF12650.2 gi|294496266|ref|YP_003542759.1| - 6 6.8 14.1 3.8 7.5 3.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) ATP-grasp_3 PF02655.9 gi|294496267|ref|YP_003542760.1| - 1.9e-41 141.6 0.0 3e-41 140.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|294496267|ref|YP_003542760.1| - 7.7e-12 45.3 0.0 1.2e-10 41.4 0.0 2.3 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|294496267|ref|YP_003542760.1| - 1e-10 40.8 0.0 5.9e-08 31.8 0.0 2.2 1 1 1 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|294496267|ref|YP_003542760.1| - 0.11 11.8 0.0 0.27 10.5 0.0 1.8 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus Hydantoinase_A PF01968.13 gi|294496268|ref|YP_003542761.1| - 1.1e-18 67.3 2.1 6.4e-18 64.8 0.6 2.4 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.1 gi|294496268|ref|YP_003542761.1| - 0.0026 16.1 0.0 0.17 10.1 0.0 2.2 2 0 0 2 2 2 2 MutL protein StbA PF06406.6 gi|294496268|ref|YP_003542761.1| - 0.05 12.5 0.1 0.65 8.8 0.0 2.1 1 1 1 2 2 2 0 StbA protein Hydant_A_N PF05378.8 gi|294496268|ref|YP_003542761.1| - 0.13 11.7 1.6 7.8 5.9 0.0 2.9 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.1 gi|294496268|ref|YP_003542761.1| - 0.31 10.9 1.5 21 4.9 0.0 3.2 2 2 0 2 2 2 0 Cell division protein FtsA AA_kinase PF00696.23 gi|294496269|ref|YP_003542762.1| - 9.8e-15 54.7 0.0 6e-13 48.8 0.0 2.0 1 1 0 1 1 1 1 Amino acid kinase family Herpes_teg_N PF04843.7 gi|294496269|ref|YP_003542762.1| - 0.0042 16.5 0.0 0.007 15.8 0.0 1.3 1 0 0 1 1 1 1 Herpesvirus tegument protein, N-terminal conserved region DUF1610 PF07754.6 gi|294496270|ref|YP_003542763.1| - 3.5e-11 42.9 14.0 1.1e-06 28.6 3.5 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.2 gi|294496270|ref|YP_003542763.1| - 0.0003 20.5 12.3 0.009 15.8 8.5 2.2 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|294496270|ref|YP_003542763.1| - 0.00055 19.3 1.9 0.00055 19.3 1.3 3.1 2 2 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|294496270|ref|YP_003542763.1| - 0.009 15.3 13.5 0.79 9.0 6.4 3.1 2 1 0 2 2 2 1 TFIIB zinc-binding tRNA-synt_1g PF09334.6 gi|294496270|ref|YP_003542763.1| - 0.013 14.1 1.7 0.013 14.1 1.1 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (M) zf-HIT PF04438.11 gi|294496270|ref|YP_003542763.1| - 0.018 14.6 14.3 0.16 11.6 3.7 2.9 1 1 1 2 2 2 0 HIT zinc finger C1_3 PF07649.7 gi|294496270|ref|YP_003542763.1| - 0.025 14.5 11.6 0.087 12.8 1.1 2.5 2 1 0 2 2 2 0 C1-like domain UPF0547 PF10571.4 gi|294496270|ref|YP_003542763.1| - 0.04 13.6 9.5 0.11 12.2 4.2 2.7 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 C1_1 PF00130.17 gi|294496270|ref|YP_003542763.1| - 0.05 13.3 1.0 0.05 13.3 0.7 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-UBP PF02148.14 gi|294496270|ref|YP_003542763.1| - 0.053 13.6 0.9 0.053 13.6 0.6 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein Tnp_zf-ribbon_2 PF13842.1 gi|294496270|ref|YP_003542763.1| - 0.053 13.9 13.2 0.32 11.4 1.9 3.1 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon OrfB_Zn_ribbon PF07282.6 gi|294496270|ref|YP_003542763.1| - 0.11 12.2 10.8 0.41 10.3 4.1 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|294496270|ref|YP_003542763.1| - 0.12 11.6 15.6 0.64 9.2 0.1 3.5 2 1 0 2 2 2 0 zinc-ribbon domain Spt4 PF06093.8 gi|294496270|ref|YP_003542763.1| - 0.13 12.1 0.5 0.13 12.1 0.4 2.0 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger NMD3 PF04981.8 gi|294496270|ref|YP_003542763.1| - 0.16 11.0 8.6 0.19 10.8 5.9 1.1 1 0 0 1 1 1 0 NMD3 family DUF1272 PF06906.6 gi|294496270|ref|YP_003542763.1| - 0.2 11.5 11.2 5.2 6.9 7.8 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) A2L_zn_ribbon PF08792.5 gi|294496270|ref|YP_003542763.1| - 0.26 10.7 0.3 0.26 10.7 0.2 3.7 2 1 2 4 4 4 0 A2L zinc ribbon domain zf-C3HC4_4 PF15227.1 gi|294496270|ref|YP_003542763.1| - 0.27 11.1 10.9 0.18 11.7 0.9 2.2 2 0 0 2 2 2 0 zinc finger of C3HC4-type, RING Rdx PF10262.4 gi|294496270|ref|YP_003542763.1| - 0.34 10.9 2.1 0.23 11.4 0.4 1.6 1 1 1 2 2 2 0 Rdx family Zn_Tnp_IS91 PF14319.1 gi|294496270|ref|YP_003542763.1| - 0.36 10.3 10.5 0.56 9.7 7.3 1.4 1 1 0 1 1 1 0 Transposase zinc-binding domain Nudix_N_2 PF14803.1 gi|294496270|ref|YP_003542763.1| - 0.38 10.4 14.4 3.7 7.2 3.1 3.3 1 1 1 2 2 2 0 Nudix N-terminal WCCH PF03716.9 gi|294496270|ref|YP_003542763.1| - 0.46 9.9 0.0 0.46 9.9 0.0 2.6 2 1 0 2 2 2 0 WCCH motif Yippee-Mis18 PF03226.9 gi|294496270|ref|YP_003542763.1| - 0.46 10.5 7.6 0.24 11.4 1.9 2.0 1 1 1 2 2 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly ADK_lid PF05191.9 gi|294496270|ref|YP_003542763.1| - 0.51 10.0 9.1 3.2 7.5 0.1 3.8 3 1 1 4 4 4 0 Adenylate kinase, active site lid PolC_DP2 PF03833.8 gi|294496270|ref|YP_003542763.1| - 0.57 7.7 6.4 0.67 7.5 4.5 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zinc-ribbons_6 PF07191.7 gi|294496270|ref|YP_003542763.1| - 0.61 9.9 10.7 2.4 8.0 7.4 1.9 1 1 0 1 1 1 0 zinc-ribbons zf-RING_5 PF14634.1 gi|294496270|ref|YP_003542763.1| - 0.67 9.7 12.8 1.5 8.5 2.8 2.3 2 1 0 2 2 2 0 zinc-RING finger domain Prok-RING_1 PF14446.1 gi|294496270|ref|YP_003542763.1| - 1 9.1 11.8 25 4.6 4.3 2.5 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-C3HC4_3 PF13920.1 gi|294496270|ref|YP_003542763.1| - 1.2 8.8 13.7 0.94 9.2 4.4 2.6 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-B_box PF00643.19 gi|294496270|ref|YP_003542763.1| - 1.2 9.0 13.6 2.4 8.1 2.0 2.9 1 1 1 2 2 2 0 B-box zinc finger DUF2039 PF10217.4 gi|294496270|ref|YP_003542763.1| - 1.6 8.7 9.4 0.22 11.5 2.9 1.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2039) TerY-C PF15616.1 gi|294496270|ref|YP_003542763.1| - 2.3 8.1 9.8 7.1 6.5 0.7 2.0 1 1 1 2 2 2 0 TerY-C metal binding domain Rubredoxin PF00301.15 gi|294496270|ref|YP_003542763.1| - 2.5 8.0 12.7 1.3 8.9 0.2 3.2 1 1 1 3 3 3 0 Rubredoxin PhnA_Zn_Ribbon PF08274.7 gi|294496270|ref|YP_003542763.1| - 2.6 7.8 14.2 18 5.2 0.7 3.3 2 1 1 3 3 2 0 PhnA Zinc-Ribbon LIM PF00412.17 gi|294496270|ref|YP_003542763.1| - 2.9 8.0 9.3 13 5.9 3.9 2.1 1 1 1 2 2 2 0 LIM domain zf-piccolo PF05715.8 gi|294496270|ref|YP_003542763.1| - 3 7.9 10.3 13 5.9 4.7 2.7 2 1 0 2 2 2 0 Piccolo Zn-finger C1_4 PF07975.7 gi|294496270|ref|YP_003542763.1| - 3.3 7.7 12.3 8.1 6.5 4.0 2.4 1 1 1 2 2 2 0 TFIIH C1-like domain Opy2 PF09463.5 gi|294496270|ref|YP_003542763.1| - 4.3 7.5 12.2 8.7 6.5 2.4 2.9 3 0 0 3 3 3 0 Opy2 protein zf-AD PF07776.10 gi|294496270|ref|YP_003542763.1| - 4.3 7.4 7.8 0.19 11.7 1.4 1.6 1 1 1 2 2 2 0 Zinc-finger associated domain (zf-AD) zf-C3HC4 PF00097.20 gi|294496270|ref|YP_003542763.1| - 4.3 7.0 13.2 6.7 6.4 0.7 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-CHY PF05495.7 gi|294496270|ref|YP_003542763.1| - 4.5 7.5 9.9 8.9 6.5 6.8 1.6 1 1 0 1 1 1 0 CHY zinc finger zf-Mss51 PF13824.1 gi|294496270|ref|YP_003542763.1| - 4.6 7.1 12.8 5.1 7.0 5.5 2.5 1 1 2 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Ribosomal_L37ae PF01780.14 gi|294496270|ref|YP_003542763.1| - 4.7 7.1 5.4 9.8 6.1 0.4 2.3 1 1 1 2 2 2 0 Ribosomal L37ae protein family DUF2296 PF10058.4 gi|294496270|ref|YP_003542763.1| - 4.8 6.9 14.4 1.5 8.6 6.0 2.9 1 1 2 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) HypA PF01155.14 gi|294496270|ref|YP_003542763.1| - 4.9 6.8 10.8 11 5.7 4.0 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-C4_Topoisom PF01396.14 gi|294496270|ref|YP_003542763.1| - 5.8 6.5 11.6 9.6 5.8 0.1 3.5 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger CpXC PF14353.1 gi|294496270|ref|YP_003542763.1| - 8.5 6.3 8.8 15 5.5 0.9 2.6 1 1 1 2 2 2 0 CpXC protein EF1_GNE PF00736.14 gi|294496271|ref|YP_003542764.1| - 5.3e-21 74.1 0.2 5.6e-21 74.0 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain ThiI PF02568.9 gi|294496272|ref|YP_003542765.1| - 7.4e-58 195.2 0.0 1e-57 194.8 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|294496272|ref|YP_003542765.1| - 3.4e-20 72.3 0.0 1.9e-19 69.9 0.0 2.0 2 0 0 2 2 2 1 THUMP domain tRNA_Me_trans PF03054.11 gi|294496272|ref|YP_003542765.1| - 4e-06 25.6 0.0 7.7e-06 24.6 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase QueC PF06508.8 gi|294496272|ref|YP_003542765.1| - 3.8e-05 23.0 0.0 0.029 13.6 0.0 2.4 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|294496272|ref|YP_003542765.1| - 0.011 14.6 0.0 0.02 13.7 0.0 1.4 1 0 0 1 1 1 0 NAD synthase Asn_synthase PF00733.16 gi|294496272|ref|YP_003542765.1| - 0.038 13.4 0.0 0.065 12.7 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase Adenine_deam_C PF13382.1 gi|294496272|ref|YP_003542765.1| - 0.039 13.1 0.0 0.25 10.4 0.0 2.2 3 0 0 3 3 3 0 Adenine deaminase C-terminal domain A2L_zn_ribbon PF08792.5 gi|294496273|ref|YP_003542766.1| - 0.0001 21.6 2.5 0.00013 21.3 1.7 1.1 1 0 0 1 1 1 1 A2L zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|294496273|ref|YP_003542766.1| - 0.00051 19.7 0.5 0.00055 19.6 0.3 1.1 1 0 0 1 1 1 1 zinc-ribbons DZR PF12773.2 gi|294496273|ref|YP_003542766.1| - 0.01 15.6 0.4 0.012 15.3 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|294496273|ref|YP_003542766.1| - 0.043 13.4 0.3 0.043 13.4 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-CHY PF05495.7 gi|294496273|ref|YP_003542766.1| - 0.055 13.6 1.3 0.062 13.4 0.9 1.1 1 0 0 1 1 1 0 CHY zinc finger Cript PF10235.4 gi|294496273|ref|YP_003542766.1| - 0.099 12.9 0.5 0.1 12.9 0.3 1.1 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT Cys_rich_CPCC PF14206.1 gi|294496273|ref|YP_003542766.1| - 0.1 12.1 1.0 0.12 11.9 0.7 1.1 1 0 0 1 1 1 0 Cysteine-rich CPCC zf-RING_4 PF14570.1 gi|294496273|ref|YP_003542766.1| - 0.13 11.8 1.5 0.18 11.3 1.1 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-TFIIB PF13453.1 gi|294496273|ref|YP_003542766.1| - 0.14 11.3 4.3 0.44 9.7 3.0 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_4 PF13717.1 gi|294496273|ref|YP_003542766.1| - 0.21 11.3 0.1 0.21 11.3 0.1 1.5 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|294496273|ref|YP_003542766.1| - 0.21 11.3 3.0 0.31 10.7 2.1 1.3 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit PhnA_Zn_Ribbon PF08274.7 gi|294496273|ref|YP_003542766.1| - 0.24 11.2 0.9 0.24 11.2 0.6 1.5 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.1 gi|294496273|ref|YP_003542766.1| - 0.28 10.7 4.0 0.55 9.7 2.8 1.6 1 1 0 1 1 1 0 zinc-ribbon domain RecR PF02132.10 gi|294496273|ref|YP_003542766.1| - 1 8.8 3.3 8.5 5.9 0.2 1.9 1 1 1 2 2 2 0 RecR protein Toprim_4 PF13662.1 gi|294496274|ref|YP_003542767.1| - 6.4e-05 22.8 0.0 0.00017 21.5 0.0 1.7 1 1 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|294496274|ref|YP_003542767.1| - 0.0016 18.3 0.1 0.02 14.8 0.1 2.3 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|294496274|ref|YP_003542767.1| - 0.034 14.4 0.0 0.05 13.9 0.0 1.4 1 0 0 1 1 1 0 Toprim-like zf-C4_ClpX PF06689.8 gi|294496275|ref|YP_003542768.1| - 0.04 13.4 0.1 0.062 12.8 0.1 1.4 1 0 0 1 1 1 0 ClpX C4-type zinc finger HTH_12 PF08461.5 gi|294496275|ref|YP_003542768.1| - 0.068 12.9 0.0 0.084 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain AMP-binding PF00501.23 gi|294496276|ref|YP_003542769.1| - 2.7e-18 65.5 0.0 3.7e-18 65.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Acylphosphatase PF00708.13 gi|294496277|ref|YP_003542770.1| - 2.6e-28 97.9 0.0 2.8e-28 97.8 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase tRNA-Thr_ED PF08915.6 gi|294496278|ref|YP_003542771.1| - 2e-54 183.3 0.3 3.5e-54 182.4 0.2 1.4 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|294496278|ref|YP_003542771.1| - 1.2e-22 80.3 0.8 1.9e-22 79.6 0.6 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|294496278|ref|YP_003542771.1| - 4.8e-20 71.3 1.4 1.1e-19 70.1 0.9 1.7 1 0 0 1 1 1 1 Anticodon binding domain UPF0118 PF01594.11 gi|294496279|ref|YP_003542772.1| - 1.2e-40 139.4 45.1 1.5e-40 139.2 31.3 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 PetG PF02529.10 gi|294496279|ref|YP_003542772.1| - 0.27 10.7 3.5 5 6.7 0.2 3.1 3 0 0 3 3 3 0 Cytochrome B6-F complex subunit 5 DHQ_synthase PF01761.15 gi|294496279|ref|YP_003542772.1| - 0.41 9.5 1.6 0.72 8.7 1.1 1.3 1 0 0 1 1 1 0 3-dehydroquinate synthase PAPS_reduct PF01507.14 gi|294496280|ref|YP_003542773.1| - 1.3e-39 135.8 0.0 1.8e-39 135.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_7 PF12838.2 gi|294496280|ref|YP_003542773.1| - 0.00038 20.7 11.0 0.00038 20.7 7.6 2.5 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294496280|ref|YP_003542773.1| - 0.00062 19.5 9.9 0.00062 19.5 6.9 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294496280|ref|YP_003542773.1| - 0.0014 18.8 11.6 0.0014 18.8 8.0 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294496280|ref|YP_003542773.1| - 0.0035 17.1 10.3 0.0035 17.1 7.2 3.6 4 1 0 4 4 4 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294496280|ref|YP_003542773.1| - 0.017 15.1 12.6 0.017 15.1 8.7 3.1 4 1 1 5 5 5 0 4Fe-4S dicluster domain NAD_synthase PF02540.12 gi|294496280|ref|YP_003542773.1| - 0.049 12.5 0.0 0.081 11.8 0.0 1.2 1 0 0 1 1 1 0 NAD synthase ATP_bind_3 PF01171.15 gi|294496280|ref|YP_003542773.1| - 0.076 12.5 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 PP-loop family Fer4 PF00037.22 gi|294496280|ref|YP_003542773.1| - 0.46 10.1 23.3 0.16 11.6 2.5 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|294496281|ref|YP_003542774.1| - 2.4e-43 146.2 1.8 3.8e-43 145.6 1.2 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.9 gi|294496281|ref|YP_003542774.1| - 1.2e-15 57.9 11.2 1.2e-13 51.3 7.7 4.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|294496281|ref|YP_003542774.1| - 2.9e-14 53.6 1.1 9.7e-05 22.5 0.0 3.1 2 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|294496281|ref|YP_003542774.1| - 1.7e-13 50.7 9.1 3.6e-07 30.4 1.4 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|294496281|ref|YP_003542774.1| - 1.3e-09 37.9 0.9 1e-08 35.0 0.2 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|294496281|ref|YP_003542774.1| - 1e-08 35.3 0.3 0.00093 19.4 0.0 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|294496281|ref|YP_003542774.1| - 7.2e-07 29.3 2.0 0.032 14.3 0.1 4.0 4 0 0 4 4 4 2 Shikimate / quinate 5-dehydrogenase Thi4 PF01946.12 gi|294496281|ref|YP_003542774.1| - 7.8e-07 28.4 3.6 2.7e-06 26.6 0.0 2.7 3 0 0 3 3 3 1 Thi4 family DAO PF01266.19 gi|294496281|ref|YP_003542774.1| - 5e-06 25.6 9.5 4.6e-05 22.4 0.8 3.2 2 1 1 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|294496281|ref|YP_003542774.1| - 5.4e-06 25.1 0.6 5.4e-06 25.1 0.4 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|294496281|ref|YP_003542774.1| - 6.8e-06 25.1 0.6 6.8e-06 25.1 0.4 3.0 2 1 1 3 3 3 1 FAD binding domain GIDA PF01134.17 gi|294496281|ref|YP_003542774.1| - 1.3e-05 24.2 5.4 0.0002 20.3 0.1 3.0 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|294496281|ref|YP_003542774.1| - 7.1e-05 22.0 1.4 0.00021 20.4 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|294496281|ref|YP_003542774.1| - 0.0002 20.6 7.5 0.00029 20.0 0.3 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|294496281|ref|YP_003542774.1| - 0.0002 20.9 2.6 0.0093 15.5 0.1 3.3 4 0 0 4 4 3 2 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.19 gi|294496281|ref|YP_003542774.1| - 0.0006 18.9 0.3 0.0006 18.9 0.2 1.8 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase 2-Hacid_dh_C PF02826.14 gi|294496281|ref|YP_003542774.1| - 0.0013 17.9 0.7 1.5 7.9 0.0 2.6 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|294496281|ref|YP_003542774.1| - 0.0021 18.4 8.1 0.25 11.8 0.5 3.6 3 1 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|294496281|ref|YP_003542774.1| - 0.0022 17.3 4.6 0.032 13.6 0.1 3.4 2 1 1 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|294496281|ref|YP_003542774.1| - 0.0026 17.4 4.4 0.054 13.1 0.3 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|294496281|ref|YP_003542774.1| - 0.003 17.3 1.2 0.12 12.0 0.2 2.4 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ELFV_dehydrog PF00208.16 gi|294496281|ref|YP_003542774.1| - 0.0032 17.0 0.7 0.099 12.2 0.0 2.2 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.13 gi|294496281|ref|YP_003542774.1| - 0.0048 16.8 2.6 2.6 8.0 0.1 3.1 3 1 0 3 3 3 2 TrkA-N domain NAD_binding_9 PF13454.1 gi|294496281|ref|YP_003542774.1| - 0.0055 16.5 0.6 0.039 13.7 0.3 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding CPSase_L_chain PF00289.17 gi|294496281|ref|YP_003542774.1| - 0.0098 15.9 1.7 0.098 12.7 0.3 2.4 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_10 PF13460.1 gi|294496281|ref|YP_003542774.1| - 0.014 15.3 10.1 1.9 8.4 1.1 3.8 4 1 0 4 4 4 0 NADH(P)-binding FMO-like PF00743.14 gi|294496281|ref|YP_003542774.1| - 0.017 13.3 0.0 1.1 7.4 0.0 2.1 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like Fer4_7 PF12838.2 gi|294496281|ref|YP_003542774.1| - 0.032 14.6 0.8 0.032 14.6 0.6 2.4 2 1 0 2 2 1 0 4Fe-4S dicluster domain THF_DHG_CYH_C PF02882.14 gi|294496281|ref|YP_003542774.1| - 0.034 13.2 1.0 5.6 6.0 0.1 3.2 3 0 0 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Lycopene_cycl PF05834.7 gi|294496281|ref|YP_003542774.1| - 0.046 12.6 1.1 0.17 10.7 0.5 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein K_oxygenase PF13434.1 gi|294496281|ref|YP_003542774.1| - 0.066 12.1 0.4 5 5.9 0.0 2.7 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_2 PF03446.10 gi|294496281|ref|YP_003542774.1| - 0.084 12.7 3.9 0.45 10.3 0.0 3.2 3 1 0 4 4 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|294496281|ref|YP_003542774.1| - 0.1 12.0 3.1 0.32 10.4 0.7 2.4 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.1 gi|294496281|ref|YP_003542774.1| - 0.21 11.8 1.3 0.55 10.5 0.1 2.3 2 1 0 2 2 2 0 XdhC Rossmann domain Rossmann-like PF10727.4 gi|294496281|ref|YP_003542774.1| - 0.24 11.1 2.0 0.78 9.4 0.0 2.6 3 0 0 3 3 3 0 Rossmann-like domain Trp_halogenase PF04820.9 gi|294496281|ref|YP_003542774.1| - 0.42 9.1 3.0 0.2 10.2 0.2 1.7 2 0 0 2 2 2 0 Tryptophan halogenase ThiF PF00899.16 gi|294496281|ref|YP_003542774.1| - 0.59 9.9 6.8 2 8.2 0.6 2.7 3 0 0 3 3 2 0 ThiF family Fer4_9 PF13187.1 gi|294496281|ref|YP_003542774.1| - 1.3 9.3 8.6 4.7 7.5 5.9 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|294496281|ref|YP_003542774.1| - 2.9 8.6 11.8 1.4 9.7 3.9 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain AdoHcyase_NAD PF00670.16 gi|294496281|ref|YP_003542774.1| - 3.1 7.6 5.8 13 5.6 0.0 3.1 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Fer4_18 PF13746.1 gi|294496281|ref|YP_003542774.1| - 3.2 8.2 6.8 0.31 11.4 0.2 2.5 2 0 0 2 2 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294496281|ref|YP_003542774.1| - 5.1 7.6 12.8 0.2 12.0 1.7 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain NAD_binding_1 PF00175.16 gi|294496282|ref|YP_003542775.1| - 1.5e-17 64.0 0.0 2.8e-17 63.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|294496282|ref|YP_003542775.1| - 3.5e-11 42.4 3.6 6.8e-11 41.4 2.5 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|294496282|ref|YP_003542775.1| - 0.00061 19.8 0.0 0.0011 19.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain AdoMet_Synthase PF01941.14 gi|294496284|ref|YP_003542777.1| - 6.3e-179 594.5 0.3 7.1e-179 594.4 0.2 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) HisG PF01634.13 gi|294496285|ref|YP_003542778.1| - 1.9e-51 173.9 0.7 2.6e-51 173.4 0.5 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|294496285|ref|YP_003542778.1| - 3.1e-25 87.9 0.2 7e-25 86.7 0.2 1.6 1 0 0 1 1 1 1 HisG, C-terminal domain SBP_bac_3 PF00497.15 gi|294496285|ref|YP_003542778.1| - 0.0023 17.2 0.1 0.0033 16.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NRDE PF05742.7 gi|294496285|ref|YP_003542778.1| - 0.058 12.6 0.1 0.086 12.1 0.0 1.2 1 0 0 1 1 1 0 NRDE protein DUF881 PF05949.7 gi|294496285|ref|YP_003542778.1| - 0.063 12.7 0.1 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF881) His_biosynth PF00977.16 gi|294496286|ref|YP_003542779.1| - 7.5e-76 254.3 0.6 8.5e-76 254.2 0.4 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|294496286|ref|YP_003542779.1| - 3.1e-09 36.1 0.2 0.0012 17.7 0.0 2.2 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.16 gi|294496286|ref|YP_003542779.1| - 3.1e-09 36.2 0.3 1.8e-05 23.8 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|294496286|ref|YP_003542779.1| - 4.2e-08 32.7 0.7 4.1e-05 22.9 0.0 2.1 2 0 0 2 2 2 2 PcrB family ThiG PF05690.9 gi|294496286|ref|YP_003542779.1| - 7.1e-06 25.2 0.6 0.0042 16.1 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG FMN_dh PF01070.13 gi|294496286|ref|YP_003542779.1| - 1.4e-05 24.1 0.2 0.033 13.0 0.0 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.10 gi|294496286|ref|YP_003542779.1| - 1.5e-05 24.2 2.1 4.8e-05 22.6 0.3 2.0 1 1 1 2 2 2 1 Nitronate monooxygenase NanE PF04131.9 gi|294496286|ref|YP_003542779.1| - 0.00011 21.2 0.2 0.13 11.1 0.1 2.1 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.12 gi|294496286|ref|YP_003542779.1| - 0.0002 20.5 0.7 0.001 18.2 0.1 2.0 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI IMPDH PF00478.20 gi|294496286|ref|YP_003542779.1| - 0.00026 20.0 0.3 0.063 12.1 0.0 2.2 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain IGPS PF00218.16 gi|294496286|ref|YP_003542779.1| - 0.00062 18.8 0.2 0.0084 15.1 0.0 2.1 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.15 gi|294496286|ref|YP_003542779.1| - 0.00083 17.9 0.1 0.15 10.6 0.0 2.1 2 0 0 2 2 2 2 Tryptophan synthase alpha chain DUF561 PF04481.7 gi|294496286|ref|YP_003542779.1| - 0.0083 15.0 0.1 0.013 14.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF561) Glu_synthase PF01645.12 gi|294496286|ref|YP_003542779.1| - 0.023 13.6 2.3 0.12 11.3 0.2 2.5 2 1 1 3 3 3 0 Conserved region in glutamate synthase G3P_antiterm PF04309.7 gi|294496286|ref|YP_003542779.1| - 0.043 12.8 0.4 3.4 6.6 0.0 2.3 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator IGPD PF00475.13 gi|294496287|ref|YP_003542780.1| - 3.4e-62 208.5 3.1 5.3e-62 207.9 2.1 1.3 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase MutS_V PF00488.16 gi|294496288|ref|YP_003542781.1| - 2.7e-09 36.7 0.0 4.8e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 MutS domain V AAA PF00004.24 gi|294496288|ref|YP_003542781.1| - 0.0013 18.9 0.8 0.0062 16.7 0.0 2.4 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) Spc42p PF11544.3 gi|294496288|ref|YP_003542781.1| - 0.0022 17.8 0.0 0.0059 16.5 0.0 1.6 1 0 0 1 1 1 1 Spindle pole body component Spc42p HHH_5 PF14520.1 gi|294496288|ref|YP_003542781.1| - 0.016 15.4 0.0 0.057 13.5 0.0 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix domain AAA_23 PF13476.1 gi|294496288|ref|YP_003542781.1| - 0.025 14.8 0.1 9.8 6.4 0.1 2.7 2 0 0 2 2 2 0 AAA domain HHH_2 PF12826.2 gi|294496288|ref|YP_003542781.1| - 0.033 14.0 0.0 0.092 12.6 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF4130 PF13566.1 gi|294496289|ref|YP_003542782.1| - 2.7e-13 49.7 0.0 3.8e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4130 Radical_SAM PF04055.16 gi|294496290|ref|YP_003542783.1| - 1.1e-06 28.9 0.1 1.9e-06 28.1 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.2 gi|294496290|ref|YP_003542783.1| - 1.5e-05 24.8 0.0 3.9e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|294496290|ref|YP_003542783.1| - 0.00026 20.5 0.0 0.00063 19.3 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif Fer4_12 PF13353.1 gi|294496290|ref|YP_003542783.1| - 0.014 15.5 0.0 0.023 14.7 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain HHH_5 PF14520.1 gi|294496290|ref|YP_003542783.1| - 0.13 12.4 0.0 0.3 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain HTH_20 PF12840.2 gi|294496291|ref|YP_003542784.1| - 3.2e-14 52.4 0.2 5.2e-14 51.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|294496291|ref|YP_003542784.1| - 2.6e-12 46.1 1.5 4.6e-12 45.4 1.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|294496291|ref|YP_003542784.1| - 1.4e-08 33.9 0.1 2.2e-08 33.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|294496291|ref|YP_003542784.1| - 5.9e-06 25.8 0.0 9.3e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|294496291|ref|YP_003542784.1| - 2.1e-05 24.1 0.2 3.5e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|294496291|ref|YP_003542784.1| - 0.00013 21.5 0.2 0.00024 20.7 0.1 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|294496291|ref|YP_003542784.1| - 0.00017 21.2 0.2 0.00029 20.4 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.1 gi|294496291|ref|YP_003542784.1| - 0.00048 19.6 0.0 0.00094 18.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|294496291|ref|YP_003542784.1| - 0.00086 18.8 0.1 0.0046 16.5 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_34 PF13601.1 gi|294496291|ref|YP_003542784.1| - 0.001 19.0 0.0 0.0021 18.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|294496291|ref|YP_003542784.1| - 0.0031 17.0 0.2 0.0059 16.2 0.1 1.5 2 0 0 2 2 1 1 HxlR-like helix-turn-helix Fe_dep_repress PF01325.14 gi|294496291|ref|YP_003542784.1| - 0.0044 16.9 0.1 0.0084 16.0 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|294496291|ref|YP_003542784.1| - 0.0052 16.7 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|294496291|ref|YP_003542784.1| - 0.011 16.0 0.1 0.02 15.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_1 PF00126.22 gi|294496291|ref|YP_003542784.1| - 0.011 15.4 0.0 0.019 14.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_45 PF14947.1 gi|294496291|ref|YP_003542784.1| - 0.011 15.5 0.0 0.059 13.1 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix Rrf2 PF02082.15 gi|294496291|ref|YP_003542784.1| - 0.025 14.7 0.1 0.05 13.7 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator Bot1p PF12298.3 gi|294496291|ref|YP_003542784.1| - 0.025 14.5 0.1 0.034 14.0 0.1 1.1 1 0 0 1 1 1 0 Eukaryotic mitochondrial regulator protein FUR PF01475.14 gi|294496291|ref|YP_003542784.1| - 0.03 14.2 0.4 0.066 13.1 0.3 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family RepL PF05732.6 gi|294496291|ref|YP_003542784.1| - 0.032 13.4 0.0 0.053 12.7 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_23 PF13384.1 gi|294496291|ref|YP_003542784.1| - 0.035 13.7 0.0 0.071 12.7 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain DUF4423 PF14394.1 gi|294496291|ref|YP_003542784.1| - 0.036 13.6 0.0 0.05 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) UPF0122 PF04297.9 gi|294496291|ref|YP_003542784.1| - 0.052 13.5 0.0 0.078 13.0 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Lipin_N PF04571.9 gi|294496291|ref|YP_003542784.1| - 0.058 13.0 0.4 1.8 8.2 0.0 2.2 1 1 1 2 2 2 0 lipin, N-terminal conserved region DUF2250 PF10007.4 gi|294496291|ref|YP_003542784.1| - 0.079 12.8 0.2 0.13 12.2 0.2 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_29 PF13551.1 gi|294496291|ref|YP_003542784.1| - 0.09 12.9 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|294496291|ref|YP_003542784.1| - 0.098 12.1 0.1 0.21 11.0 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 ArsR PF09824.4 gi|294496291|ref|YP_003542784.1| - 0.099 11.9 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 ArsR transcriptional regulator PAX PF00292.13 gi|294496291|ref|YP_003542784.1| - 0.11 12.1 0.0 0.26 10.9 0.0 1.5 2 0 0 2 2 2 0 'Paired box' domain HTH_Tnp_ISL3 PF13542.1 gi|294496291|ref|YP_003542784.1| - 0.12 11.5 0.0 0.3 10.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Trp_repressor PF01371.14 gi|294496291|ref|YP_003542784.1| - 0.13 12.1 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Trp repressor protein AP_endonuc_2 PF01261.19 gi|294496292|ref|YP_003542785.1| - 1.3e-21 76.8 1.1 7.1e-21 74.4 0.7 1.8 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel ADP_PFK_GK PF04587.10 gi|294496293|ref|YP_003542786.1| - 2.6e-66 223.6 0.0 3e-66 223.4 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region ADP_PFK_GK PF04587.10 gi|294496294|ref|YP_003542787.1| - 5e-114 380.9 0.0 5.8e-114 380.7 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region PfkB PF00294.19 gi|294496294|ref|YP_003542787.1| - 0.035 13.2 0.0 0.076 12.1 0.0 1.5 1 0 0 1 1 1 0 pfkB family carbohydrate kinase ArgJ PF01960.13 gi|294496295|ref|YP_003542788.1| - 8.5e-137 455.6 8.5 9.8e-137 455.4 5.9 1.0 1 0 0 1 1 1 1 ArgJ family Rifin_STEVOR PF02009.11 gi|294496295|ref|YP_003542788.1| - 0.2 11.2 0.5 0.47 10.0 0.0 1.9 2 0 0 2 2 2 0 Rifin/stevor family CBS PF00571.23 gi|294496296|ref|YP_003542789.1| - 2.3e-34 116.8 1.0 1.9e-16 59.5 0.0 2.1 2 0 0 2 2 2 2 CBS domain Semialdhyde_dh PF01118.19 gi|294496297|ref|YP_003542790.1| - 1e-32 112.9 0.0 1.8e-32 112.1 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|294496297|ref|YP_003542790.1| - 6.2e-20 71.8 0.0 8.1e-20 71.4 0.0 1.1 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.17 gi|294496297|ref|YP_003542790.1| - 0.0016 18.9 0.0 0.0034 17.8 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|294496297|ref|YP_003542790.1| - 0.0039 17.0 0.0 0.0071 16.2 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.12 gi|294496297|ref|YP_003542790.1| - 0.018 15.4 0.0 0.035 14.5 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|294496297|ref|YP_003542790.1| - 0.069 13.1 0.0 0.2 11.6 0.0 1.8 1 1 0 1 1 1 0 NADH(P)-binding Nuc_deoxyrib_tr PF05014.10 gi|294496298|ref|YP_003542791.1| - 8.1e-31 106.2 0.0 9.2e-31 106.0 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase TIR_2 PF13676.1 gi|294496298|ref|YP_003542791.1| - 0.0012 19.0 0.0 0.0021 18.1 0.0 1.4 1 1 0 1 1 1 1 TIR domain DUF4406 PF14359.1 gi|294496298|ref|YP_003542791.1| - 0.0031 17.5 0.0 0.004 17.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4406) NAD_binding_2 PF03446.10 gi|294496298|ref|YP_003542791.1| - 0.0085 15.9 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AMMECR1 PF01871.12 gi|294496299|ref|YP_003542792.1| - 2.1e-58 196.2 0.0 2.4e-58 196.0 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 PGK PF00162.14 gi|294496300|ref|YP_003542793.1| - 1.4e-117 392.5 0.1 1.5e-117 392.3 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase AAA_26 PF13500.1 gi|294496301|ref|YP_003542794.1| - 2.5e-31 108.8 0.2 4.4e-31 108.0 0.0 1.5 2 0 0 2 2 2 1 AAA domain DRTGG PF07085.7 gi|294496301|ref|YP_003542794.1| - 9.1e-31 105.5 0.3 2.8e-30 104.0 0.2 1.9 1 0 0 1 1 1 1 DRTGG domain CbiA PF01656.18 gi|294496301|ref|YP_003542794.1| - 1.6e-09 37.4 0.6 3.6e-09 36.3 0.1 1.7 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|294496301|ref|YP_003542794.1| - 0.096 12.6 0.1 0.27 11.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain GXWXG PF14231.1 gi|294496301|ref|YP_003542794.1| - 0.12 12.0 0.0 0.36 10.5 0.0 1.8 2 0 0 2 2 2 0 GXWXG protein ATP-grasp_5 PF13549.1 gi|294496302|ref|YP_003542795.1| - 1.2e-77 260.1 0.0 1.7e-77 259.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|294496302|ref|YP_003542795.1| - 4.1e-55 185.1 3.5 5.5e-55 184.7 0.2 2.8 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|294496302|ref|YP_003542795.1| - 4.9e-29 100.8 0.6 1.8e-28 99.0 0.1 2.3 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|294496302|ref|YP_003542795.1| - 7.4e-17 61.6 0.3 2e-16 60.3 0.2 1.8 1 0 0 1 1 1 1 CoA binding domain CPSase_L_D2 PF02786.12 gi|294496302|ref|YP_003542795.1| - 0.089 12.0 0.0 0.17 11.1 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain FMN_red PF03358.10 gi|294496303|ref|YP_003542796.1| - 7.6e-36 122.9 0.0 9.4e-36 122.6 0.0 1.0 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|294496303|ref|YP_003542796.1| - 1e-12 47.9 0.0 1.2e-12 47.7 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_1 PF00258.20 gi|294496303|ref|YP_003542796.1| - 0.0015 18.5 0.0 0.037 14.0 0.0 2.1 1 1 0 2 2 2 1 Flavodoxin Fer4_8 PF13183.1 gi|294496303|ref|YP_003542796.1| - 0.02 14.9 0.0 0.03 14.3 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Flavodoxin_5 PF12724.2 gi|294496303|ref|YP_003542796.1| - 0.052 13.5 0.0 0.08 12.9 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin domain Fer4_4 PF12800.2 gi|294496303|ref|YP_003542796.1| - 0.22 11.9 1.8 0.42 11.0 1.2 1.4 1 0 0 1 1 1 0 4Fe-4S binding domain PduV-EutP PF10662.4 gi|294496304|ref|YP_003542797.1| - 0.0042 16.5 0.0 0.0044 16.5 0.0 1.1 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation DUF3206 PF11472.3 gi|294496304|ref|YP_003542797.1| - 0.067 12.9 0.0 0.07 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3206) Radical_SAM PF04055.16 gi|294496305|ref|YP_003542798.1| - 5.3e-25 88.4 0.1 5.2e-24 85.2 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|294496305|ref|YP_003542798.1| - 1.1e-12 47.6 0.1 2.4e-12 46.5 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|294496305|ref|YP_003542798.1| - 3e-07 30.1 0.0 5.7e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 TRAM domain FBPase_glpX PF03320.8 gi|294496306|ref|YP_003542799.1| - 3e-115 384.1 3.4 3.4e-115 383.9 2.4 1.0 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Gp37_Gp68 PF07505.6 gi|294496306|ref|YP_003542799.1| - 0.02 14.0 0.1 0.034 13.3 0.1 1.3 1 0 0 1 1 1 0 Phage protein Gp37/Gp68 IMCp PF12314.3 gi|294496306|ref|YP_003542799.1| - 0.043 13.9 2.3 0.12 12.4 1.6 1.7 1 0 0 1 1 1 0 Inner membrane complex protein CGI-121 PF08617.5 gi|294496307|ref|YP_003542800.1| - 9.9e-21 74.0 0.0 1.1e-20 73.8 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 FliE PF02049.13 gi|294496307|ref|YP_003542800.1| - 0.011 15.7 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 0 Flagellar hook-basal body complex protein FliE IMD PF08397.6 gi|294496307|ref|YP_003542800.1| - 0.064 12.5 0.0 0.087 12.1 0.0 1.1 1 0 0 1 1 1 0 IRSp53/MIM homology domain PALP PF00291.20 gi|294496308|ref|YP_003542801.1| - 6.4e-70 235.7 1.6 7.5e-70 235.5 1.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme tRNA-synt_1 PF00133.17 gi|294496309|ref|YP_003542802.1| - 1.4e-63 214.9 1.7 2.5e-44 151.2 0.3 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|294496309|ref|YP_003542802.1| - 5.3e-29 101.0 1.1 4.4e-12 45.3 0.0 3.4 2 1 1 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|294496309|ref|YP_003542802.1| - 6e-21 74.7 0.0 1.2e-20 73.8 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|294496309|ref|YP_003542802.1| - 3.8e-10 39.3 0.0 1.2e-06 27.9 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|294496309|ref|YP_003542802.1| - 1.4e-09 37.5 0.0 2.9e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1d PF00750.14 gi|294496309|ref|YP_003542802.1| - 0.00014 20.8 0.0 0.00038 19.4 0.0 1.7 1 0 0 1 1 1 1 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|294496309|ref|YP_003542802.1| - 0.02 13.5 0.0 0.043 12.4 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetases class I (K) UPF0231 PF06062.6 gi|294496309|ref|YP_003542802.1| - 0.031 14.1 0.5 0.25 11.2 0.0 2.6 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0231) ABC_tran PF00005.22 gi|294496310|ref|YP_003542803.1| - 3.2e-30 105.2 0.1 1.1e-27 97.0 0.0 2.2 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|294496310|ref|YP_003542803.1| - 1.3e-15 58.1 1.1 1.5e-11 44.8 0.0 2.4 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|294496310|ref|YP_003542803.1| - 7.1e-10 38.4 0.0 9.6e-07 28.2 0.0 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|294496310|ref|YP_003542803.1| - 4.8e-09 35.7 7.8 1.6e-07 30.7 0.2 2.6 3 0 0 3 3 3 2 AAA ATPase domain AAA_25 PF13481.1 gi|294496310|ref|YP_003542803.1| - 5.6e-05 22.6 0.2 0.0035 16.7 0.1 2.6 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|294496310|ref|YP_003542803.1| - 0.00066 19.8 0.9 0.009 16.2 0.6 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|294496310|ref|YP_003542803.1| - 0.0013 18.5 0.0 0.0028 17.5 0.0 1.5 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|294496310|ref|YP_003542803.1| - 0.0044 17.3 3.0 0.029 14.6 0.2 2.2 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.1 gi|294496310|ref|YP_003542803.1| - 0.0047 15.4 2.1 0.51 8.7 0.1 2.3 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|294496310|ref|YP_003542803.1| - 0.005 16.3 0.0 0.012 15.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|294496310|ref|YP_003542803.1| - 0.0072 15.8 0.1 0.62 9.4 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|294496310|ref|YP_003542803.1| - 0.008 16.3 1.3 1.9 8.6 0.0 3.0 2 1 1 3 3 3 1 AAA domain NB-ARC PF00931.17 gi|294496310|ref|YP_003542803.1| - 0.02 13.7 0.4 0.19 10.5 0.3 2.0 1 1 0 1 1 1 0 NB-ARC domain Arch_ATPase PF01637.13 gi|294496310|ref|YP_003542803.1| - 0.021 14.5 0.1 0.096 12.3 0.1 1.9 1 1 0 1 1 1 0 Archaeal ATPase DUF258 PF03193.11 gi|294496310|ref|YP_003542803.1| - 0.026 13.6 0.9 0.067 12.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_24 PF13479.1 gi|294496310|ref|YP_003542803.1| - 0.029 13.9 0.3 0.13 11.8 0.1 1.9 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|294496310|ref|YP_003542803.1| - 0.033 13.5 0.6 7.5 5.9 0.1 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein ATP-synt_ab PF00006.20 gi|294496310|ref|YP_003542803.1| - 0.053 13.0 0.0 0.09 12.2 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain BCA_ABC_TP_C PF12399.3 gi|294496310|ref|YP_003542803.1| - 0.056 13.1 0.1 0.26 11.0 0.0 2.1 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter NTPase_1 PF03266.10 gi|294496310|ref|YP_003542803.1| - 0.061 13.0 1.0 0.89 9.2 0.1 2.3 2 0 0 2 2 2 0 NTPase AAA_14 PF13173.1 gi|294496310|ref|YP_003542803.1| - 0.069 13.0 0.6 0.45 10.4 0.0 2.5 3 0 0 3 3 3 0 AAA domain TIP49 PF06068.8 gi|294496310|ref|YP_003542803.1| - 0.083 11.5 0.5 0.18 10.5 0.1 1.7 2 0 0 2 2 2 0 TIP49 C-terminus cobW PF02492.14 gi|294496310|ref|YP_003542803.1| - 0.088 12.2 0.7 0.15 11.4 0.1 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain KaiC PF06745.8 gi|294496310|ref|YP_003542803.1| - 0.1 11.6 0.1 1.8 7.6 0.0 2.2 2 0 0 2 2 2 0 KaiC NACHT PF05729.7 gi|294496310|ref|YP_003542803.1| - 0.13 11.8 0.1 0.49 10.0 0.0 1.9 2 0 0 2 2 2 0 NACHT domain CbiQ PF02361.11 gi|294496311|ref|YP_003542804.1| - 4e-32 111.5 11.0 6e-32 111.0 7.6 1.1 1 0 0 1 1 1 1 Cobalt transport protein CarboxypepD_reg PF13620.1 gi|294496312|ref|YP_003542805.1| - 4.4e-05 23.4 0.1 6.5e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|294496312|ref|YP_003542805.1| - 0.055 13.2 0.1 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Cna protein B-type domain DUF4480 PF13715.1 gi|294496312|ref|YP_003542805.1| - 0.064 13.3 0.1 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4480) A2M_N PF01835.14 gi|294496312|ref|YP_003542805.1| - 0.11 12.8 0.0 0.19 12.0 0.0 1.5 1 1 0 1 1 1 0 MG2 domain PepSY_TM PF03929.11 gi|294496312|ref|YP_003542805.1| - 0.26 11.7 2.7 1.2 9.6 0.2 2.3 2 0 0 2 2 2 0 PepSY-associated TM helix CbiM PF01891.11 gi|294496313|ref|YP_003542806.1| - 6e-50 169.7 19.9 6.7e-50 169.5 13.8 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF1422 PF07226.6 gi|294496313|ref|YP_003542806.1| - 0.035 13.8 0.9 0.14 11.9 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1422) THOC7 PF05615.8 gi|294496314|ref|YP_003542807.1| - 1.2e-05 25.5 0.3 0.14 12.4 0.0 2.7 2 1 1 3 3 3 2 Tho complex subunit 7 Cluap1 PF10234.4 gi|294496314|ref|YP_003542807.1| - 4.5e-05 22.8 12.9 0.00064 19.0 2.6 2.3 1 1 1 2 2 2 2 Clusterin-associated protein-1 DUF1664 PF07889.7 gi|294496314|ref|YP_003542807.1| - 0.00021 21.0 5.6 0.12 12.2 0.2 3.1 1 1 0 2 2 2 2 Protein of unknown function (DUF1664) BLOC1_2 PF10046.4 gi|294496314|ref|YP_003542807.1| - 0.0012 18.9 11.4 0.27 11.3 0.4 4.2 1 1 3 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4407 PF14362.1 gi|294496314|ref|YP_003542807.1| - 0.0012 17.8 6.3 0.033 13.1 0.5 2.2 1 1 0 2 2 2 2 Domain of unknown function (DUF4407) CorA PF01544.13 gi|294496314|ref|YP_003542807.1| - 0.0016 17.5 12.2 0.15 11.0 0.5 2.9 1 1 1 2 2 2 2 CorA-like Mg2+ transporter protein SlyX PF04102.7 gi|294496314|ref|YP_003542807.1| - 0.0019 18.5 5.0 0.34 11.3 0.1 3.6 3 0 0 3 3 3 1 SlyX CLU PF13236.1 gi|294496314|ref|YP_003542807.1| - 0.0046 16.4 7.1 0.59 9.5 0.1 3.3 4 0 0 4 4 4 2 Clustered mitochondria Nsp1_C PF05064.8 gi|294496314|ref|YP_003542807.1| - 0.0067 16.0 5.5 0.8 9.3 0.2 3.1 3 0 0 3 3 2 2 Nsp1-like C-terminal region V-SNARE PF05008.10 gi|294496314|ref|YP_003542807.1| - 0.0068 16.5 7.9 1.8 8.7 0.1 3.9 4 0 0 4 4 4 2 Vesicle transport v-SNARE protein N-terminus DUF641 PF04859.7 gi|294496314|ref|YP_003542807.1| - 0.008 15.9 3.9 0.18 11.5 0.1 2.8 3 1 0 3 3 2 1 Plant protein of unknown function (DUF641) ALIX_LYPXL_bnd PF13949.1 gi|294496314|ref|YP_003542807.1| - 0.013 14.4 16.9 0.43 9.5 5.6 2.0 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV Synaptobrevin PF00957.16 gi|294496314|ref|YP_003542807.1| - 0.017 14.7 9.4 1.9 8.1 0.1 5.2 5 1 1 6 6 6 0 Synaptobrevin Ded_cyto PF06920.8 gi|294496314|ref|YP_003542807.1| - 0.023 14.0 0.2 6.8 5.9 0.0 2.4 2 0 0 2 2 2 0 Dedicator of cytokinesis Syntaxin-6_N PF09177.6 gi|294496314|ref|YP_003542807.1| - 0.028 14.7 13.5 0.26 11.6 0.4 3.8 1 1 1 3 3 3 0 Syntaxin 6, N-terminal AhpC-TSA PF00578.16 gi|294496314|ref|YP_003542807.1| - 0.049 13.3 0.1 4.1 7.1 0.0 2.5 2 0 0 2 2 2 0 AhpC/TSA family Fzo_mitofusin PF04799.8 gi|294496314|ref|YP_003542807.1| - 0.072 12.4 1.0 7.3 5.9 0.1 2.7 2 0 0 2 2 2 0 fzo-like conserved region DUF3585 PF12130.3 gi|294496314|ref|YP_003542807.1| - 0.073 12.9 4.5 0.43 10.4 0.8 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3585) Put_DNA-bind_N PF06971.8 gi|294496314|ref|YP_003542807.1| - 0.083 12.6 0.8 9.3 6.1 0.0 2.8 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus DUF4446 PF14584.1 gi|294496314|ref|YP_003542807.1| - 0.12 12.1 4.1 5.9 6.7 0.1 3.2 2 2 2 4 4 4 0 Protein of unknown function (DUF4446) TBPIP PF07106.8 gi|294496314|ref|YP_003542807.1| - 0.14 11.7 10.4 0.27 10.7 0.5 3.0 1 1 2 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF1395 PF07160.7 gi|294496314|ref|YP_003542807.1| - 0.25 10.7 13.5 0.63 9.5 1.2 3.4 1 1 3 4 4 4 0 Protein of unknown function (DUF1395) DivIC PF04977.10 gi|294496314|ref|YP_003542807.1| - 0.38 10.2 3.8 7.3 6.1 0.1 2.9 3 0 0 3 3 2 0 Septum formation initiator DUF1090 PF06476.7 gi|294496314|ref|YP_003542807.1| - 0.5 10.0 4.5 15 5.2 0.0 3.6 3 2 1 4 4 4 0 Protein of unknown function (DUF1090) ADIP PF11559.3 gi|294496314|ref|YP_003542807.1| - 0.52 10.1 6.5 3.2 7.6 0.1 3.1 2 1 1 3 3 3 0 Afadin- and alpha -actinin-Binding Sipho_Gp157 PF05565.6 gi|294496314|ref|YP_003542807.1| - 0.81 9.2 13.5 2.1 7.8 0.1 3.6 2 2 0 3 3 3 0 Siphovirus Gp157 DUF812 PF05667.6 gi|294496314|ref|YP_003542807.1| - 0.9 7.9 16.8 0.53 8.7 2.7 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF812) DUF3373 PF11853.3 gi|294496314|ref|YP_003542807.1| - 1.3 7.4 5.8 9.1 4.6 0.2 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3373) DUF2408 PF10303.4 gi|294496314|ref|YP_003542807.1| - 2.9 8.0 8.1 3.9 7.5 1.0 2.8 3 1 0 3 3 2 0 Protein of unknown function (DUF2408) TMPIT PF07851.8 gi|294496314|ref|YP_003542807.1| - 5.2 6.0 7.3 4.2 6.3 0.2 2.7 1 1 2 3 3 3 0 TMPIT-like protein Herpes_UL25 PF01499.11 gi|294496314|ref|YP_003542807.1| - 8.7 4.5 11.7 4.2 5.5 0.4 2.7 2 1 0 2 2 2 0 Herpesvirus UL25 family ArsR PF09824.4 gi|294496316|ref|YP_003542809.1| - 1.3e-70 235.8 0.1 1.5e-70 235.6 0.1 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator EntA_Immun PF08951.5 gi|294496316|ref|YP_003542809.1| - 0.099 12.8 0.1 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Enterocin A Immunity HTH_24 PF13412.1 gi|294496317|ref|YP_003542810.1| - 1.2e-10 40.6 1.9 2.1e-10 39.7 0.0 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|294496317|ref|YP_003542810.1| - 1.2e-08 34.5 0.0 2.3e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|294496317|ref|YP_003542810.1| - 2.1e-07 30.4 0.0 4.4e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|294496317|ref|YP_003542810.1| - 1.2e-06 28.1 0.0 3.7e-06 26.5 0.0 1.8 2 0 0 2 2 1 1 MarR family HTH_27 PF13463.1 gi|294496317|ref|YP_003542810.1| - 2e-06 27.9 0.0 1.2e-05 25.4 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|294496317|ref|YP_003542810.1| - 6.8e-05 22.5 0.0 0.00025 20.7 0.0 2.0 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_3 PF01381.17 gi|294496317|ref|YP_003542810.1| - 9e-05 22.2 0.1 0.0021 17.8 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix Rrf2 PF02082.15 gi|294496317|ref|YP_003542810.1| - 0.00013 21.9 0.0 0.00037 20.5 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.14 gi|294496317|ref|YP_003542810.1| - 0.00026 20.8 0.0 0.00079 19.3 0.0 1.8 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.1 gi|294496317|ref|YP_003542810.1| - 0.00071 19.3 0.1 0.0016 18.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.5 gi|294496317|ref|YP_003542810.1| - 0.0013 18.2 0.0 0.0024 17.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain RPA_C PF08784.6 gi|294496317|ref|YP_003542810.1| - 0.0018 18.6 0.0 0.0041 17.5 0.0 1.6 1 0 0 1 1 1 1 Replication protein A C terminal HTH_36 PF13730.1 gi|294496317|ref|YP_003542810.1| - 0.0034 17.4 0.0 0.013 15.6 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|294496317|ref|YP_003542810.1| - 0.008 15.7 0.0 0.017 14.7 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|294496317|ref|YP_003542810.1| - 0.017 15.1 0.0 0.039 13.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain KorB PF08535.5 gi|294496317|ref|YP_003542810.1| - 0.026 14.6 0.0 0.065 13.4 0.0 1.7 1 0 0 1 1 1 0 KorB domain HTH_13 PF11972.3 gi|294496317|ref|YP_003542810.1| - 0.028 14.2 0.0 0.063 13.1 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|294496317|ref|YP_003542810.1| - 0.031 13.8 0.0 0.1 12.1 0.0 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain GntR PF00392.16 gi|294496317|ref|YP_003542810.1| - 0.036 13.5 0.0 0.081 12.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_34 PF13601.1 gi|294496317|ref|YP_003542810.1| - 0.038 14.0 0.2 0.22 11.5 0.0 2.4 3 1 0 3 3 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|294496317|ref|YP_003542810.1| - 0.04 13.4 0.0 0.096 12.2 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain TrmB PF01978.14 gi|294496317|ref|YP_003542810.1| - 0.046 13.4 0.1 0.091 12.4 0.1 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2194 PF09960.4 gi|294496317|ref|YP_003542810.1| - 0.051 11.6 0.2 3.4 5.5 0.1 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2194) HTH_10 PF04967.7 gi|294496317|ref|YP_003542810.1| - 0.055 13.0 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_29 PF13551.1 gi|294496317|ref|YP_003542810.1| - 0.1 12.7 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_17 PF12728.2 gi|294496317|ref|YP_003542810.1| - 0.11 12.7 0.1 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|294496317|ref|YP_003542810.1| - 0.13 12.4 0.0 0.36 11.0 0.0 1.7 1 0 0 1 1 1 0 FaeA-like protein Metallophos_2 PF12850.2 gi|294496318|ref|YP_003542811.1| - 5.4e-27 94.5 0.0 6.4e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|294496318|ref|YP_003542811.1| - 0.00011 21.6 2.8 0.032 13.6 0.2 2.3 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase MIF PF01187.13 gi|294496318|ref|YP_003542811.1| - 0.026 14.5 0.0 9.9 6.2 0.0 2.2 2 0 0 2 2 2 0 Macrophage migration inhibitory factor (MIF) PilS PF08805.6 gi|294496321|ref|YP_003542814.1| - 0.054 13.0 2.2 21 4.6 0.0 3.4 3 0 0 3 3 3 0 PilS N terminal Na_H_Exchanger PF00999.16 gi|294496322|ref|YP_003542815.1| - 1.2e-38 132.6 55.3 1.6e-38 132.2 38.3 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|294496322|ref|YP_003542815.1| - 3.4e-28 97.9 0.3 8.2e-28 96.7 0.2 1.7 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|294496322|ref|YP_003542815.1| - 1.7e-12 46.7 0.1 4.4e-12 45.4 0.1 1.8 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|294496322|ref|YP_003542815.1| - 5.1e-09 36.3 0.2 1.3e-08 34.9 0.2 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|294496322|ref|YP_003542815.1| - 2e-05 23.7 0.2 0.0001 21.4 0.1 2.0 2 0 0 2 2 2 1 Saccharopine dehydrogenase NAD_binding_2 PF03446.10 gi|294496322|ref|YP_003542815.1| - 0.00019 21.2 0.1 0.00056 19.7 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|294496322|ref|YP_003542815.1| - 0.00027 20.3 0.1 0.0005 19.5 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|294496322|ref|YP_003542815.1| - 0.0004 20.7 0.0 0.0013 19.1 0.0 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|294496322|ref|YP_003542815.1| - 0.0014 18.6 0.0 0.0023 17.9 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding ApbA PF02558.11 gi|294496322|ref|YP_003542815.1| - 0.0037 16.7 0.0 0.0067 15.8 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.1 gi|294496322|ref|YP_003542815.1| - 0.0039 17.4 0.0 0.0074 16.5 0.0 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain NAD_Gly3P_dh_N PF01210.18 gi|294496322|ref|YP_003542815.1| - 0.013 15.2 0.4 0.043 13.5 0.0 2.1 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|294496322|ref|YP_003542815.1| - 0.042 13.0 0.0 0.095 11.8 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|294496322|ref|YP_003542815.1| - 0.048 13.3 0.0 0.093 12.3 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|294496322|ref|YP_003542815.1| - 0.065 12.2 0.0 0.086 11.8 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain NmrA PF05368.8 gi|294496322|ref|YP_003542815.1| - 0.07 12.3 0.1 0.13 11.4 0.1 1.4 1 0 0 1 1 1 0 NmrA-like family B12-binding PF02310.14 gi|294496323|ref|YP_003542816.1| - 4.9e-27 94.1 0.7 7.7e-27 93.5 0.5 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|294496323|ref|YP_003542816.1| - 1.1e-18 67.0 0.3 1.1e-18 67.0 0.2 2.0 3 0 0 3 3 3 1 B12 binding domain UPF0180 PF03698.8 gi|294496323|ref|YP_003542816.1| - 0.039 13.8 0.1 0.092 12.5 0.1 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) DUF3486 PF11985.3 gi|294496323|ref|YP_003542816.1| - 0.088 12.8 0.3 0.2 11.6 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3486) DUF1537 PF07005.6 gi|294496323|ref|YP_003542816.1| - 0.09 12.4 1.6 6 6.4 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function, DUF1537 Phage_Coat_Gp8 PF05371.7 gi|294496324|ref|YP_003542817.1| - 0.73 9.4 3.5 0.93 9.0 2.4 1.2 1 0 0 1 1 1 0 Phage major coat protein, Gp8 EamA PF00892.15 gi|294496326|ref|YP_003542819.1| - 4.3e-10 39.7 38.4 1.3e-07 31.6 7.3 2.9 3 1 0 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|294496326|ref|YP_003542819.1| - 1.2e-09 38.3 8.9 1.2e-09 38.3 6.2 3.5 2 1 1 3 3 3 2 Multidrug resistance efflux transporter DUF4538 PF15061.1 gi|294496326|ref|YP_003542819.1| - 0.54 9.6 2.7 2.1 7.7 1.9 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4538) DUF1440 PF07274.7 gi|294496326|ref|YP_003542819.1| - 3.3 7.7 7.8 1.2 9.1 0.8 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1440) B12-binding PF02310.14 gi|294496327|ref|YP_003542820.1| - 3.5e-22 78.5 0.7 6.1e-22 77.7 0.5 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|294496327|ref|YP_003542820.1| - 1.2e-18 66.9 0.5 2e-18 66.1 0.1 1.6 2 0 0 2 2 2 1 B12 binding domain MTTB PF06253.6 gi|294496328|ref|YP_003542821.1| - 4e-22 77.6 0.0 4.3e-22 77.5 0.0 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) MTTB PF06253.6 gi|294496329|ref|YP_003542822.1| - 1.1e-54 185.1 0.0 1.3e-54 184.8 0.0 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) DUF4445 PF14574.1 gi|294496330|ref|YP_003542823.1| - 1.2e-113 379.4 2.1 1.6e-113 379.1 1.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4_7 PF12838.2 gi|294496330|ref|YP_003542823.1| - 1.6e-08 34.7 9.5 3.1e-08 33.8 6.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294496330|ref|YP_003542823.1| - 1.7e-08 34.1 10.0 3.3e-08 33.2 7.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294496330|ref|YP_003542823.1| - 1.9e-08 34.4 10.2 3.7e-08 33.5 7.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294496330|ref|YP_003542823.1| - 3.1e-08 33.1 13.5 0.00023 20.8 1.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|294496330|ref|YP_003542823.1| - 1.8e-07 30.8 11.0 1.7e-06 27.7 8.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|294496330|ref|YP_003542823.1| - 1.9e-06 27.2 15.9 0.001 18.5 2.6 3.1 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|294496330|ref|YP_003542823.1| - 6.2e-06 25.8 11.5 0.0056 16.5 1.1 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|294496330|ref|YP_003542823.1| - 2.2e-05 24.7 3.7 0.1 12.9 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294496330|ref|YP_003542823.1| - 0.00084 20.0 12.5 0.015 16.0 8.6 2.5 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|294496330|ref|YP_003542823.1| - 0.0023 18.2 3.8 0.015 15.6 0.1 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294496330|ref|YP_003542823.1| - 0.0024 17.8 10.0 0.028 14.4 7.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294496330|ref|YP_003542823.1| - 0.0028 17.8 14.2 0.18 12.2 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|294496330|ref|YP_003542823.1| - 0.0057 17.1 14.6 0.26 11.9 1.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|294496330|ref|YP_003542823.1| - 0.023 15.2 9.7 0.074 13.6 6.7 2.0 1 1 0 1 1 1 0 4Fe-4S single cluster domain FGGY_N PF00370.16 gi|294496330|ref|YP_003542823.1| - 0.056 12.7 0.0 0.1 11.8 0.0 1.4 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain CMAS PF02353.15 gi|294496330|ref|YP_003542823.1| - 0.071 12.1 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Fer4_11 PF13247.1 gi|294496330|ref|YP_003542823.1| - 0.14 12.0 3.9 0.27 11.1 2.7 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|294496330|ref|YP_003542823.1| - 0.55 10.6 9.3 1.3 9.4 6.5 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF3775 PF12616.3 gi|294496331|ref|YP_003542824.1| - 0.13 12.0 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3775) Ribosomal_S27 PF01599.14 gi|294496331|ref|YP_003542824.1| - 0.21 11.4 1.6 0.57 10.0 0.1 2.2 2 0 0 2 2 2 0 Ribosomal protein S27a Ribosomal_L31 PF01197.13 gi|294496332|ref|YP_003542825.1| - 0.029 14.3 0.2 0.058 13.3 0.1 1.5 1 0 0 1 1 1 0 Ribosomal protein L31 CBFD_NFYB_HMF PF00808.18 gi|294496333|ref|YP_003542826.1| - 9.6e-17 60.8 0.8 1.1e-16 60.6 0.5 1.1 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|294496333|ref|YP_003542826.1| - 1.7e-12 47.2 0.2 2e-12 47.0 0.2 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|294496333|ref|YP_003542826.1| - 5.2e-05 23.3 0.0 5.5e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Kinetochore component CENP-S CENP-T PF15511.1 gi|294496333|ref|YP_003542826.1| - 0.00018 20.9 0.0 0.00019 20.8 0.0 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T TAF PF02969.12 gi|294496333|ref|YP_003542826.1| - 0.0023 17.8 0.3 0.0026 17.6 0.2 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.10 gi|294496333|ref|YP_003542826.1| - 0.0044 16.8 0.0 0.0049 16.6 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit Bromo_TP PF07524.8 gi|294496333|ref|YP_003542826.1| - 0.0053 16.4 0.0 0.0066 16.1 0.0 1.1 1 0 0 1 1 1 1 Bromodomain associated ApbA_C PF08546.6 gi|294496333|ref|YP_003542826.1| - 0.0061 16.5 0.2 0.0069 16.3 0.2 1.0 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal DUF2949 PF11165.3 gi|294496333|ref|YP_003542826.1| - 0.017 15.3 0.1 0.48 10.6 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2949) PCP_red PF08369.5 gi|294496333|ref|YP_003542826.1| - 0.074 12.9 1.1 0.25 11.2 0.2 2.0 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit TFIID-18kDa PF02269.11 gi|294496333|ref|YP_003542826.1| - 0.12 12.2 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit Sm_multidrug_ex PF06695.6 gi|294496334|ref|YP_003542827.1| - 1.3e-40 138.2 1.7 1.9e-40 137.7 1.2 1.2 1 0 0 1 1 1 1 Putative small multi-drug export protein DUF4199 PF13858.1 gi|294496334|ref|YP_003542827.1| - 0.27 11.1 5.7 0.63 9.9 3.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) MAPEG PF01124.13 gi|294496334|ref|YP_003542827.1| - 0.33 10.5 9.1 0.034 13.7 2.8 1.9 2 0 0 2 2 2 0 MAPEG family DUF4407 PF14362.1 gi|294496334|ref|YP_003542827.1| - 1.2 7.9 3.1 1.8 7.4 2.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Rep_fac_C PF08542.6 gi|294496335|ref|YP_003542828.1| - 6.6e-20 70.8 0.0 1.3e-19 69.9 0.0 1.5 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|294496335|ref|YP_003542828.1| - 4.7e-18 65.6 0.0 1.2e-17 64.3 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|294496335|ref|YP_003542828.1| - 2.4e-17 63.0 0.0 4.2e-15 55.7 0.0 2.4 1 1 0 1 1 1 1 DNA polymerase III, delta subunit RuvB_N PF05496.7 gi|294496335|ref|YP_003542828.1| - 4.3e-09 35.7 0.0 2.5e-08 33.2 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Rad17 PF03215.10 gi|294496335|ref|YP_003542828.1| - 2e-08 33.3 0.0 6.2e-06 25.1 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|294496335|ref|YP_003542828.1| - 5.1e-08 32.8 0.0 7.9e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|294496335|ref|YP_003542828.1| - 9.2e-07 29.0 0.1 0.00018 21.5 0.0 2.9 1 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.1 gi|294496335|ref|YP_003542828.1| - 1.2e-06 28.7 0.0 0.047 13.8 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_3 PF07726.6 gi|294496335|ref|YP_003542828.1| - 1.9e-06 27.5 0.0 8.4e-06 25.4 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|294496335|ref|YP_003542828.1| - 1.6e-05 23.8 0.0 9.4e-05 21.2 0.0 2.1 3 0 0 3 3 3 1 TIP49 C-terminus Mg_chelatase PF01078.16 gi|294496335|ref|YP_003542828.1| - 0.00012 21.3 0.0 0.018 14.1 0.0 2.4 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI ResIII PF04851.10 gi|294496335|ref|YP_003542828.1| - 0.00037 20.3 0.0 0.00081 19.2 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|294496335|ref|YP_003542828.1| - 0.00053 19.6 0.0 0.001 18.7 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|294496335|ref|YP_003542828.1| - 0.00074 19.8 0.0 0.0028 17.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|294496335|ref|YP_003542828.1| - 0.00082 18.8 0.0 0.0021 17.4 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein Sigma54_activ_2 PF14532.1 gi|294496335|ref|YP_003542828.1| - 0.0011 19.0 0.0 0.0024 17.9 0.0 1.5 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_5 PF07728.9 gi|294496335|ref|YP_003542828.1| - 0.0024 17.6 0.0 0.023 14.4 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) DNA_pol3_delta PF06144.8 gi|294496335|ref|YP_003542828.1| - 0.0034 16.8 0.0 0.0061 16.0 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Sigma54_activat PF00158.21 gi|294496335|ref|YP_003542828.1| - 0.0036 16.7 0.0 2.2 7.7 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_17 PF13207.1 gi|294496335|ref|YP_003542828.1| - 0.0042 17.9 0.1 0.013 16.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|294496335|ref|YP_003542828.1| - 0.0049 16.4 0.0 0.0065 16.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|294496335|ref|YP_003542828.1| - 0.011 15.5 0.0 0.027 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) SNF2_N PF00176.18 gi|294496335|ref|YP_003542828.1| - 0.038 12.7 0.0 0.96 8.1 0.0 2.1 1 1 1 2 2 2 0 SNF2 family N-terminal domain AAA_25 PF13481.1 gi|294496335|ref|YP_003542828.1| - 0.042 13.2 0.0 0.08 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|294496335|ref|YP_003542828.1| - 0.056 12.6 0.0 3.9 6.6 0.0 2.2 1 1 0 2 2 2 0 PhoH-like protein DUF3400 PF11880.3 gi|294496335|ref|YP_003542828.1| - 0.061 12.5 0.0 0.17 11.1 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) RNA_helicase PF00910.17 gi|294496335|ref|YP_003542828.1| - 0.1 12.7 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|294496335|ref|YP_003542828.1| - 0.12 11.7 0.1 0.96 8.8 0.0 2.1 1 1 1 2 2 2 0 AAA-like domain Tic20 PF09685.5 gi|294496336|ref|YP_003542829.1| - 9.3e-13 48.1 4.9 1.2e-12 47.8 3.4 1.0 1 0 0 1 1 1 1 Tic20-like protein TMEM213 PF15192.1 gi|294496336|ref|YP_003542829.1| - 7.8 6.5 5.5 4 7.5 2.0 1.7 2 0 0 2 2 2 0 TMEM213 family Fer4 PF00037.22 gi|294496337|ref|YP_003542830.1| - 1.3e-20 72.0 51.9 6.2e-08 31.9 5.2 5.9 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294496337|ref|YP_003542830.1| - 7.6e-20 71.0 49.7 6.8e-09 35.9 9.4 4.2 2 2 2 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294496337|ref|YP_003542830.1| - 1.1e-14 54.4 44.8 4.6e-09 36.3 11.1 3.9 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294496337|ref|YP_003542830.1| - 2.8e-13 49.0 49.6 1.2e-05 24.9 3.4 5.8 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|294496337|ref|YP_003542830.1| - 3.4e-13 48.6 48.0 3.4e-06 26.6 1.4 6.0 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|294496337|ref|YP_003542830.1| - 3.8e-13 49.0 46.1 2.3e-09 36.9 10.0 4.3 2 2 1 3 3 3 2 4Fe-4S dicluster domain FeS PF04060.8 gi|294496337|ref|YP_003542830.1| - 5.3e-13 48.3 1.0 5.3e-13 48.3 0.7 4.1 4 0 0 4 4 2 1 Putative Fe-S cluster Fer4_21 PF14697.1 gi|294496337|ref|YP_003542830.1| - 9.4e-12 44.6 46.9 2.1e-06 27.4 12.5 5.0 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294496337|ref|YP_003542830.1| - 1.5e-08 34.5 41.6 1.5e-05 24.8 8.6 3.8 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294496337|ref|YP_003542830.1| - 4.1e-07 30.6 43.0 0.0015 19.1 9.5 4.9 4 2 2 6 6 6 4 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|294496337|ref|YP_003542830.1| - 3.6e-06 26.8 54.9 0.0055 16.9 3.2 6.3 7 0 0 7 7 5 4 4Fe-4S binding domain Fer4_3 PF12798.2 gi|294496337|ref|YP_003542830.1| - 1.6e-05 25.0 58.5 0.011 16.2 3.5 6.4 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_18 PF13746.1 gi|294496337|ref|YP_003542830.1| - 0.00056 20.2 47.6 0.15 12.5 4.2 4.9 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|294496337|ref|YP_003542830.1| - 0.0034 17.7 47.3 0.061 13.6 10.7 5.0 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|294496337|ref|YP_003542830.1| - 0.0041 17.4 43.5 0.009 16.3 1.8 5.7 4 2 0 4 4 4 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|294496337|ref|YP_003542830.1| - 0.018 15.5 3.9 0.018 15.5 2.7 6.0 5 2 1 6 6 5 0 4Fe-4S single cluster domain Rnf-Nqr PF02508.9 gi|294496338|ref|YP_003542831.1| - 7.5e-63 211.5 18.3 8.6e-63 211.3 12.7 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein Rnf-Nqr PF02508.9 gi|294496339|ref|YP_003542832.1| - 7.2e-60 201.8 14.1 8.2e-60 201.6 9.8 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein FMN_bind PF04205.9 gi|294496340|ref|YP_003542833.1| - 8.2e-18 64.3 0.3 1.3e-17 63.7 0.2 1.3 1 0 0 1 1 1 1 FMN-binding domain NQR2_RnfD_RnfE PF03116.10 gi|294496341|ref|YP_003542834.1| - 1.4e-68 231.3 26.9 1.3e-38 132.9 7.7 2.0 1 1 1 2 2 2 2 NQR2, RnfD, RnfE family Complex1_51K PF01512.12 gi|294496342|ref|YP_003542835.1| - 9e-21 74.1 0.0 2.3e-20 72.8 0.0 1.7 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.1 gi|294496342|ref|YP_003542835.1| - 1.8e-19 69.3 1.4 1.8e-19 69.3 1.0 2.2 2 1 0 2 2 2 1 RnfC Barrel sandwich hybrid domain Fer4_8 PF13183.1 gi|294496342|ref|YP_003542835.1| - 3.6e-11 42.9 30.9 3.7e-07 30.0 8.5 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294496342|ref|YP_003542835.1| - 4.2e-10 39.2 7.8 4.2e-10 39.2 5.4 2.1 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294496342|ref|YP_003542835.1| - 2.3e-09 37.4 12.1 9.1e-09 35.5 8.4 2.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294496342|ref|YP_003542835.1| - 3e-09 37.0 10.0 0.00019 21.6 0.5 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294496342|ref|YP_003542835.1| - 3.5e-09 36.1 12.5 0.00019 21.1 0.8 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|294496342|ref|YP_003542835.1| - 4.9e-09 35.4 13.4 0.00015 21.2 2.0 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain SLBB PF10531.4 gi|294496342|ref|YP_003542835.1| - 8e-09 35.2 0.2 1.9e-08 34.0 0.1 1.7 1 0 0 1 1 1 1 SLBB domain Fer4_17 PF13534.1 gi|294496342|ref|YP_003542835.1| - 8e-08 32.5 11.0 2.4e-07 30.9 7.6 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294496342|ref|YP_003542835.1| - 8.4e-08 32.5 10.6 0.00047 20.5 0.4 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294496342|ref|YP_003542835.1| - 8.6e-08 31.9 10.7 0.0008 19.2 1.7 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294496342|ref|YP_003542835.1| - 1.5e-07 30.8 13.4 0.0023 17.7 1.9 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|294496342|ref|YP_003542835.1| - 2.7e-07 30.3 17.6 0.00067 19.7 2.0 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|294496342|ref|YP_003542835.1| - 1e-05 26.1 10.1 0.022 15.5 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|294496342|ref|YP_003542835.1| - 0.00017 21.9 23.5 0.01 16.3 4.6 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain NQRA PF05896.6 gi|294496342|ref|YP_003542835.1| - 0.027 13.6 0.0 0.04 13.0 0.0 1.2 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Fer4_15 PF13459.1 gi|294496342|ref|YP_003542835.1| - 0.041 14.4 5.3 4.2 8.0 0.5 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|294496342|ref|YP_003542835.1| - 0.065 13.6 11.9 0.27 11.6 1.0 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|294496342|ref|YP_003542835.1| - 0.12 11.9 10.7 1.1 8.9 6.7 2.4 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Cytochrome_C7 PF14522.1 gi|294496343|ref|YP_003542836.1| - 2.4e-08 33.4 30.6 0.0037 16.8 0.2 5.2 4 1 0 4 4 4 4 Cytochrome c7 Cytochrome_C554 PF13435.1 gi|294496343|ref|YP_003542836.1| - 3.7e-07 30.2 28.0 0.017 15.1 0.2 4.8 3 2 1 4 4 4 3 Cytochrome c554 and c-prime Cytochrom_c3_2 PF14537.1 gi|294496343|ref|YP_003542836.1| - 1.3e-06 28.6 30.0 0.0083 16.4 0.1 4.9 3 2 0 3 3 3 3 Cytochrome c3 EF-hand_5 PF13202.1 gi|294496343|ref|YP_003542836.1| - 0.046 13.0 1.9 0.055 12.8 0.0 2.0 1 1 1 2 2 2 0 EF hand ApbE PF02424.10 gi|294496344|ref|YP_003542837.1| - 2.6e-76 256.2 0.0 3.2e-76 255.9 0.0 1.1 1 0 0 1 1 1 1 ApbE family RVP PF00077.15 gi|294496344|ref|YP_003542837.1| - 0.031 14.1 0.0 0.062 13.2 0.0 1.5 1 0 0 1 1 1 0 Retroviral aspartyl protease PFK PF00365.15 gi|294496344|ref|YP_003542837.1| - 0.048 12.5 0.1 0.088 11.7 0.0 1.5 1 0 0 1 1 1 0 Phosphofructokinase ABC2_membrane_3 PF12698.2 gi|294496344|ref|YP_003542837.1| - 5.6 5.8 7.5 6.4 5.7 5.2 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein LigT_PEase PF02834.11 gi|294496345|ref|YP_003542838.1| - 1.6e-28 98.5 0.0 7.8e-15 54.6 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|294496345|ref|YP_003542838.1| - 1.1e-10 41.3 0.0 1.4e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|294496345|ref|YP_003542838.1| - 2.4e-10 40.4 0.0 2.8e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Corona_NS2A PF05213.7 gi|294496345|ref|YP_003542838.1| - 0.02 14.2 0.0 0.023 13.9 0.0 1.2 1 0 0 1 1 1 0 Coronavirus NS2A protein AAA_25 PF13481.1 gi|294496345|ref|YP_003542838.1| - 0.068 12.5 0.0 0.086 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain DisA_N PF02457.11 gi|294496346|ref|YP_003542839.1| - 8e-29 99.2 0.2 8e-29 99.2 0.1 2.6 3 1 1 4 4 4 1 DisA bacterial checkpoint controller nucleotide-binding 5_nucleotid_C PF02872.13 gi|294496346|ref|YP_003542839.1| - 0.13 12.2 0.3 0.46 10.4 0.0 1.9 2 0 0 2 2 2 0 5'-nucleotidase, C-terminal domain eRF1_1 PF03463.10 gi|294496347|ref|YP_003542840.1| - 3.2e-31 107.6 1.1 7.6e-31 106.4 0.8 1.6 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|294496347|ref|YP_003542840.1| - 2.6e-24 85.6 0.4 7.3e-24 84.2 0.3 1.8 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|294496347|ref|YP_003542840.1| - 2e-17 63.7 0.1 3.5e-17 62.9 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 FbpA PF05833.6 gi|294496348|ref|YP_003542841.1| - 2.2e-102 342.9 1.8 2.8e-102 342.6 1.2 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|294496348|ref|YP_003542841.1| - 1.5e-28 98.5 0.0 3e-28 97.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF814) DNA_primase_S PF01896.14 gi|294496349|ref|YP_003542842.1| - 4.2e-21 75.2 0.0 9e-21 74.2 0.0 1.5 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit Sld5 PF05916.6 gi|294496350|ref|YP_003542843.1| - 0.0028 17.9 1.4 0.0073 16.5 0.9 1.7 1 0 0 1 1 1 1 GINS complex protein Laminin_B PF00052.13 gi|294496350|ref|YP_003542843.1| - 0.14 11.8 1.0 0.23 11.0 0.2 1.7 2 0 0 2 2 2 0 Laminin B (Domain IV) Takusan PF04822.8 gi|294496350|ref|YP_003542843.1| - 1.5 8.6 5.4 2.3 8.0 1.1 2.5 1 1 1 2 2 2 0 Takusan Ribosomal_L44 PF00935.14 gi|294496351|ref|YP_003542844.1| - 3.3e-25 87.8 10.4 5.1e-25 87.2 7.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.15 gi|294496351|ref|YP_003542844.1| - 0.096 12.9 1.8 0.096 12.9 1.3 2.9 4 0 0 4 4 4 0 Ribosomal protein L33 DUF2296 PF10058.4 gi|294496351|ref|YP_003542844.1| - 0.098 12.4 1.4 3.9 7.2 0.0 2.3 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zinc_ribbon_5 PF13719.1 gi|294496351|ref|YP_003542844.1| - 0.11 12.0 2.1 9.1 5.9 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Thioredoxin_3 PF13192.1 gi|294496351|ref|YP_003542844.1| - 0.13 12.0 0.5 1.3 8.9 0.0 2.1 2 0 0 2 2 2 0 Thioredoxin domain WCCH PF03716.9 gi|294496351|ref|YP_003542844.1| - 0.27 10.7 4.3 0.36 10.3 0.5 2.4 2 0 0 2 2 2 0 WCCH motif RNHCP PF12647.2 gi|294496351|ref|YP_003542844.1| - 0.28 11.0 3.0 4.4 7.1 0.2 2.1 1 1 0 2 2 2 0 RNHCP domain zinc_ribbon_2 PF13240.1 gi|294496351|ref|YP_003542844.1| - 0.58 9.7 3.9 4 7.0 0.7 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|294496351|ref|YP_003542844.1| - 1.3 8.7 6.0 8.7 6.1 0.8 2.7 2 1 0 2 2 2 0 Nudix N-terminal zf-HIT PF04438.11 gi|294496351|ref|YP_003542844.1| - 1.5 8.5 7.2 0.51 10.0 0.4 2.3 2 0 0 2 2 2 0 HIT zinc finger Ribosomal_S27e PF01667.12 gi|294496352|ref|YP_003542845.1| - 8.2e-25 86.1 0.9 8.8e-25 86.0 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zf-BED PF02892.10 gi|294496352|ref|YP_003542845.1| - 0.0062 16.2 2.4 0.031 14.0 0.0 2.0 1 1 1 2 2 2 1 BED zinc finger Zn_Tnp_IS91 PF14319.1 gi|294496352|ref|YP_003542845.1| - 0.0091 15.4 0.2 0.0094 15.4 0.1 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain Sgf11 PF08209.6 gi|294496352|ref|YP_003542845.1| - 0.0093 15.2 2.5 0.069 12.4 0.0 2.2 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) C1_1 PF00130.17 gi|294496352|ref|YP_003542845.1| - 0.024 14.3 0.7 0.034 13.8 0.5 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HypA PF01155.14 gi|294496352|ref|YP_003542845.1| - 0.037 13.7 0.3 0.04 13.6 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_6 PF14599.1 gi|294496352|ref|YP_003542845.1| - 0.097 12.4 2.7 0.22 11.3 1.6 1.8 2 1 0 2 2 2 0 Zinc-ribbon Zn-ribbon_8 PF09723.5 gi|294496352|ref|YP_003542845.1| - 0.14 12.1 1.0 0.21 11.5 0.7 1.2 1 0 0 1 1 1 0 Zinc ribbon domain ZZ PF00569.12 gi|294496352|ref|YP_003542845.1| - 0.46 10.0 3.7 5.3 6.6 2.8 2.0 1 1 1 2 2 2 0 Zinc finger, ZZ type EIF_2_alpha PF07541.7 gi|294496353|ref|YP_003542846.1| - 1.1e-29 102.4 0.2 1.8e-29 101.7 0.1 1.3 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|294496353|ref|YP_003542846.1| - 3.1e-11 43.1 0.1 7e-11 42.0 0.1 1.6 1 0 0 1 1 1 1 S1 RNA binding domain Transposase_22 PF02994.9 gi|294496353|ref|YP_003542846.1| - 0.00079 18.0 1.5 0.0011 17.5 1.0 1.2 1 0 0 1 1 1 1 L1 transposable element DUF4317 PF14199.1 gi|294496353|ref|YP_003542846.1| - 0.023 13.5 1.3 0.036 12.8 0.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4317) RE_TdeIII PF09520.5 gi|294496353|ref|YP_003542846.1| - 0.035 13.4 1.2 0.053 12.8 0.8 1.2 1 0 0 1 1 1 0 Type II restriction endonuclease, TdeIII Cytidylate_kin2 PF13189.1 gi|294496353|ref|YP_003542846.1| - 0.065 13.1 1.9 0.1 12.5 0.4 1.8 1 1 0 2 2 2 0 Cytidylate kinase-like family tRNA-synt_His PF13393.1 gi|294496353|ref|YP_003542846.1| - 0.12 11.3 0.5 0.29 10.1 0.0 1.7 2 0 0 2 2 2 0 Histidyl-tRNA synthetase Nop10p PF04135.7 gi|294496354|ref|YP_003542847.1| - 9.9e-22 76.4 2.5 1e-21 76.3 1.8 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family PolC_DP2 PF03833.8 gi|294496354|ref|YP_003542847.1| - 0.0012 16.6 0.6 0.0012 16.6 0.4 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 NOB1_Zn_bind PF08772.6 gi|294496354|ref|YP_003542847.1| - 0.0032 17.2 0.2 0.0046 16.7 0.2 1.3 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.1 gi|294496354|ref|YP_003542847.1| - 0.0063 15.6 3.5 0.034 13.3 0.2 2.1 1 1 1 2 2 2 1 zinc-ribbon domain DUF1272 PF06906.6 gi|294496354|ref|YP_003542847.1| - 0.011 15.5 1.3 0.013 15.2 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-H2C2_2 PF13465.1 gi|294496354|ref|YP_003542847.1| - 0.014 15.6 1.2 2.9 8.3 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-ISL3 PF14690.1 gi|294496354|ref|YP_003542847.1| - 0.041 13.9 3.3 0.096 12.7 0.3 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|294496354|ref|YP_003542847.1| - 0.067 13.0 2.5 0.12 12.2 1.7 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|294496354|ref|YP_003542847.1| - 0.11 12.0 1.5 0.78 9.3 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain RecR PF02132.10 gi|294496354|ref|YP_003542847.1| - 0.14 11.6 0.7 0.18 11.2 0.5 1.2 1 0 0 1 1 1 0 RecR protein zf-C4_Topoisom PF01396.14 gi|294496354|ref|YP_003542847.1| - 0.27 10.7 2.3 0.35 10.4 0.3 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Ribosomal_S27e PF01667.12 gi|294496354|ref|YP_003542847.1| - 0.34 10.4 3.2 6.4 6.4 0.3 2.2 1 1 1 2 2 2 0 Ribosomal protein S27 OrfB_Zn_ribbon PF07282.6 gi|294496354|ref|YP_003542847.1| - 0.39 10.4 2.3 1.6 8.4 0.1 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Cys_rich_CPCC PF14206.1 gi|294496354|ref|YP_003542847.1| - 0.41 10.2 2.7 2.9 7.5 0.1 2.1 1 1 1 2 2 2 0 Cysteine-rich CPCC zf-dskA_traR PF01258.12 gi|294496354|ref|YP_003542847.1| - 0.54 10.0 6.2 3.7 7.3 0.4 2.3 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger TFIIS_C PF01096.13 gi|294496354|ref|YP_003542847.1| - 0.59 9.8 4.1 2.8 7.6 0.3 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Enterotoxin_HS1 PF08090.6 gi|294496354|ref|YP_003542847.1| - 1.1 9.0 4.9 2.2 8.0 3.4 1.6 1 1 0 1 1 1 0 Heat stable E.coli enterotoxin 1 Zn_Tnp_IS1595 PF12760.2 gi|294496354|ref|YP_003542847.1| - 1.4 8.7 4.3 1.1 9.1 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|294496354|ref|YP_003542847.1| - 1.5 8.4 6.9 1.5 8.4 1.1 2.3 1 1 2 3 3 3 0 zinc-ribbon domain DUF1610 PF07754.6 gi|294496354|ref|YP_003542847.1| - 1.8 8.7 8.3 0.83 9.8 1.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.5 gi|294496354|ref|YP_003542847.1| - 2.4 8.1 5.2 42 4.2 3.7 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-tcix PF14952.1 gi|294496354|ref|YP_003542847.1| - 2.8 7.3 5.5 7.1 6.0 0.3 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding PAC2 PF09754.4 gi|294496355|ref|YP_003542848.1| - 1e-53 182.4 0.2 1.2e-53 182.2 0.1 1.0 1 0 0 1 1 1 1 PAC2 family PHP PF02811.14 gi|294496356|ref|YP_003542849.1| - 0.00049 19.9 0.0 0.00073 19.3 0.0 1.3 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|294496356|ref|YP_003542849.1| - 0.036 13.5 0.0 0.1 12.1 0.0 1.8 1 0 0 1 1 1 0 PHP-associated AAA_21 PF13304.1 gi|294496357|ref|YP_003542850.1| - 4.4e-22 79.3 10.3 4.4e-22 79.3 7.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|294496357|ref|YP_003542850.1| - 5.1e-14 52.1 13.5 2.6e-08 33.3 5.7 3.2 2 1 0 3 3 3 2 AAA ATPase domain AAA_23 PF13476.1 gi|294496357|ref|YP_003542850.1| - 7.9e-13 49.1 3.7 7.9e-13 49.1 2.6 2.6 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|294496357|ref|YP_003542850.1| - 1.2e-07 31.0 0.0 2.4e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|294496357|ref|YP_003542850.1| - 6.3e-06 25.5 1.3 3.1e-05 23.3 0.1 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.3 gi|294496357|ref|YP_003542850.1| - 0.00032 19.9 0.1 0.012 14.6 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) ABC_tran PF00005.22 gi|294496357|ref|YP_003542850.1| - 0.00045 20.5 0.1 0.019 15.2 0.0 2.8 3 1 1 4 4 4 1 ABC transporter MMR_HSR1 PF01926.18 gi|294496357|ref|YP_003542850.1| - 0.0022 17.9 0.1 0.0066 16.4 0.1 2.0 1 0 0 1 1 1 1 50S ribosome-binding GTPase DUF2110 PF09883.4 gi|294496357|ref|YP_003542850.1| - 0.031 13.8 0.1 0.054 13.1 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2110) DUF3456 PF11938.3 gi|294496357|ref|YP_003542850.1| - 0.072 13.0 0.4 0.13 12.2 0.3 1.5 1 0 0 1 1 1 0 TLR4 regulator and MIR-interacting MSAP Dynamin_N PF00350.18 gi|294496357|ref|YP_003542850.1| - 0.081 12.7 0.6 0.26 11.1 0.0 2.1 2 1 0 2 2 2 0 Dynamin family Inhibitor_I42 PF09394.5 gi|294496359|ref|YP_003542852.1| - 4.4e-27 94.2 0.5 8.4e-27 93.3 0.1 1.7 2 0 0 2 2 2 1 Chagasin family peptidase inhibitor I42 DUF3244 PF11589.3 gi|294496359|ref|YP_003542852.1| - 0.0017 18.0 0.4 2.5 7.8 0.0 3.3 3 0 0 3 3 3 2 Domain of unknown function (DUF3244) MacB_PCD PF12704.2 gi|294496360|ref|YP_003542853.1| - 6.1e-36 124.1 4.4 6.1e-36 124.1 3.1 2.4 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|294496360|ref|YP_003542853.1| - 3.8e-24 84.7 20.0 5.1e-24 84.3 9.1 2.2 2 0 0 2 2 2 2 FtsX-like permease family Claudin_2 PF13903.1 gi|294496360|ref|YP_003542853.1| - 1.4 8.6 10.7 15 5.2 3.3 3.1 2 1 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction MacB_PCD PF12704.2 gi|294496361|ref|YP_003542854.1| - 1.1e-37 129.8 5.8 1.1e-37 129.8 4.1 2.7 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|294496361|ref|YP_003542854.1| - 1.3e-21 76.5 18.3 2.6e-21 75.6 9.5 2.2 2 0 0 2 2 2 2 FtsX-like permease family NPCBM_assoc PF10633.4 gi|294496362|ref|YP_003542855.1| - 0.04 13.9 0.2 3.9 7.6 0.0 3.6 4 0 0 4 4 4 0 NPCBM-associated, NEW3 domain of alpha-galactosidase ETRAMP PF09716.5 gi|294496362|ref|YP_003542855.1| - 0.076 12.9 0.0 0.47 10.4 0.0 2.1 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) DUF4625 PF15418.1 gi|294496362|ref|YP_003542855.1| - 0.1 12.7 0.3 4.9 7.2 0.0 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4625) Tad PF13400.1 gi|294496362|ref|YP_003542855.1| - 1.7 8.7 0.0 1.7 8.7 0.0 2.4 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like ABC_tran PF00005.22 gi|294496363|ref|YP_003542856.1| - 2.6e-32 111.9 0.0 3.6e-32 111.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|294496363|ref|YP_003542856.1| - 4.3e-14 53.1 0.0 1.7e-08 34.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|294496363|ref|YP_003542856.1| - 1.2e-05 24.6 0.1 0.0001 21.5 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|294496363|ref|YP_003542856.1| - 8.2e-05 22.0 0.0 0.00016 21.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|294496363|ref|YP_003542856.1| - 0.00035 19.7 0.0 0.00061 19.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|294496363|ref|YP_003542856.1| - 0.00047 19.6 0.1 0.0011 18.4 0.0 1.5 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|294496363|ref|YP_003542856.1| - 0.0017 18.4 0.1 0.013 15.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|294496363|ref|YP_003542856.1| - 0.002 18.1 0.1 0.0058 16.6 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|294496363|ref|YP_003542856.1| - 0.0028 17.9 0.4 0.28 11.4 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|294496363|ref|YP_003542856.1| - 0.003 18.3 0.2 0.011 16.5 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|294496363|ref|YP_003542856.1| - 0.0032 16.8 0.0 0.0083 15.5 0.0 1.6 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|294496363|ref|YP_003542856.1| - 0.0057 16.6 0.1 0.014 15.3 0.1 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|294496363|ref|YP_003542856.1| - 0.0082 16.4 0.0 0.01 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|294496363|ref|YP_003542856.1| - 0.013 15.2 0.1 0.2 11.3 0.0 2.1 2 0 0 2 2 2 0 Archaeal ATPase AAA_33 PF13671.1 gi|294496363|ref|YP_003542856.1| - 0.014 15.2 0.2 0.036 13.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|294496363|ref|YP_003542856.1| - 0.031 13.6 0.0 0.11 11.8 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_15 PF13175.1 gi|294496363|ref|YP_003542856.1| - 0.036 13.1 0.0 5.6 5.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|294496363|ref|YP_003542856.1| - 0.04 13.6 0.1 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|294496363|ref|YP_003542856.1| - 0.062 12.8 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|294496363|ref|YP_003542856.1| - 0.088 11.6 0.1 0.14 10.9 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.7 gi|294496363|ref|YP_003542856.1| - 0.088 12.4 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|294496363|ref|YP_003542856.1| - 0.096 12.5 0.0 0.39 10.6 0.0 2.0 1 1 1 2 2 2 0 AAA domain RNA12 PF10443.4 gi|294496363|ref|YP_003542856.1| - 0.12 10.8 0.0 0.17 10.3 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein SbcCD_C PF13558.1 gi|294496363|ref|YP_003542856.1| - 0.12 12.2 0.1 0.67 9.9 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Adeno_IVa2 PF02456.10 gi|294496363|ref|YP_003542856.1| - 0.14 10.7 0.0 0.28 9.8 0.0 1.4 2 0 0 2 2 2 0 Adenovirus IVa2 protein RNA_helicase PF00910.17 gi|294496363|ref|YP_003542856.1| - 0.15 12.2 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Endonuc-HincII PF09226.6 gi|294496365|ref|YP_003542858.1| - 0.033 13.5 0.0 0.08 12.2 0.0 1.6 1 0 0 1 1 1 0 Restriction endonuclease HincII MacB_PCD PF12704.2 gi|294496366|ref|YP_003542859.1| - 1.1e-28 100.3 1.3 1.1e-28 100.3 0.9 2.1 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|294496366|ref|YP_003542859.1| - 1.6e-24 85.9 12.3 2.3e-24 85.4 6.8 2.0 2 0 0 2 2 2 1 FtsX-like permease family UPF0052 PF01933.13 gi|294496368|ref|YP_003542861.1| - 4e-52 177.4 0.0 5.6e-52 176.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 HD PF01966.17 gi|294496369|ref|YP_003542862.1| - 4.2e-10 39.6 2.5 4.2e-10 39.6 1.7 2.0 2 0 0 2 2 2 1 HD domain HDOD PF08668.7 gi|294496369|ref|YP_003542862.1| - 0.0044 16.3 0.1 0.012 14.9 0.0 1.6 1 1 0 1 1 1 1 HDOD domain CSD PF00313.17 gi|294496370|ref|YP_003542863.1| - 0.05 13.3 0.0 6.1 6.7 0.0 2.1 2 0 0 2 2 2 0 'Cold-shock' DNA-binding domain Flavoprotein PF02441.14 gi|294496371|ref|YP_003542864.1| - 2.3e-30 104.9 0.1 2.9e-30 104.5 0.1 1.1 1 0 0 1 1 1 1 Flavoprotein ThiS PF02597.15 gi|294496372|ref|YP_003542865.1| - 1.2e-19 70.4 0.2 1.4e-19 70.2 0.1 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|294496372|ref|YP_003542865.1| - 0.0051 16.9 0.1 0.0055 16.7 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) UPF0193 PF05250.6 gi|294496372|ref|YP_003542865.1| - 0.0059 16.1 0.0 0.0066 16.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0193) TraC PF07820.7 gi|294496372|ref|YP_003542865.1| - 0.065 13.4 0.1 0.076 13.2 0.0 1.2 1 0 0 1 1 1 0 TraC-like protein CRCB PF02537.10 gi|294496373|ref|YP_003542866.1| - 3.8e-23 81.5 12.6 4.5e-23 81.3 8.7 1.0 1 0 0 1 1 1 1 CrcB-like protein Phageshock_PspG PF09583.5 gi|294496373|ref|YP_003542866.1| - 3.7 7.6 6.3 0.71 9.9 1.3 1.9 2 0 0 2 2 2 0 Phage shock protein G (Phageshock_PspG) CRCB PF02537.10 gi|294496374|ref|YP_003542867.1| - 8.2e-25 86.9 8.2 9.3e-25 86.7 5.7 1.0 1 0 0 1 1 1 1 CrcB-like protein MFS_1 PF07690.11 gi|294496374|ref|YP_003542867.1| - 0.0016 17.2 6.8 0.0018 17.0 4.7 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily FtsX PF02687.16 gi|294496374|ref|YP_003542867.1| - 0.38 10.5 5.6 2.6 7.8 0.0 2.4 2 1 0 2 2 2 0 FtsX-like permease family DUF190 PF02641.10 gi|294496375|ref|YP_003542868.1| - 1.1e-27 95.8 0.4 1.2e-27 95.7 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 CRS1_YhbY PF01985.16 gi|294496376|ref|YP_003542869.1| - 3.7e-25 87.7 0.2 4.1e-25 87.6 0.1 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain KaiC PF06745.8 gi|294496377|ref|YP_003542870.1| - 1.7e-10 40.4 0.4 4e-10 39.2 0.3 1.5 1 1 0 1 1 1 1 KaiC AAA_35 PF14516.1 gi|294496377|ref|YP_003542870.1| - 0.0048 15.5 0.0 0.0067 15.0 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain MoCF_biosynth PF00994.19 gi|294496378|ref|YP_003542871.1| - 8.8e-33 112.7 0.1 1e-32 112.5 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF658 PF04936.7 gi|294496378|ref|YP_003542871.1| - 0.082 12.7 0.0 0.099 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF658) Ribosomal_L16 PF00252.13 gi|294496379|ref|YP_003542872.1| - 2.8e-34 117.7 2.8 3.3e-34 117.4 2.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Mitoc_L55 PF09776.4 gi|294496379|ref|YP_003542872.1| - 0.062 12.8 0.1 0.062 12.8 0.1 1.7 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L55 eIF-5_eIF-2B PF01873.12 gi|294496380|ref|YP_003542873.1| - 3.8e-37 126.7 0.0 5.7e-37 126.1 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|294496380|ref|YP_003542873.1| - 2.1e-12 46.6 0.9 2.9e-12 46.1 0.2 1.6 2 0 0 2 2 2 1 TRAM domain ZF-HD_dimer PF04770.7 gi|294496380|ref|YP_003542873.1| - 0.021 14.9 0.3 0.034 14.1 0.2 1.4 1 0 0 1 1 1 0 ZF-HD protein dimerisation region Zn-ribbon_8 PF09723.5 gi|294496380|ref|YP_003542873.1| - 0.039 13.9 0.7 0.069 13.1 0.5 1.4 1 0 0 1 1 1 0 Zinc ribbon domain DUF2387 PF09526.5 gi|294496380|ref|YP_003542873.1| - 0.11 12.3 1.1 0.2 11.5 0.8 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-RanBP PF00641.13 gi|294496380|ref|YP_003542873.1| - 1 8.5 3.0 0.58 9.3 0.1 1.9 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Radical_SAM PF04055.16 gi|294496381|ref|YP_003542874.1| - 5.1e-13 49.5 0.3 1.5e-12 48.0 0.1 1.9 3 0 0 3 3 3 1 Radical SAM superfamily SPASM PF13186.1 gi|294496381|ref|YP_003542874.1| - 6.1e-09 36.0 0.2 1.8e-08 34.5 0.1 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|294496381|ref|YP_003542874.1| - 5.7e-05 23.1 0.0 0.00015 21.7 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|294496381|ref|YP_003542874.1| - 0.00019 21.5 0.0 0.00068 19.7 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain QCR10 PF09796.4 gi|294496381|ref|YP_003542874.1| - 0.097 12.3 0.0 0.28 10.8 0.0 1.7 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) tRNA-synt_1b PF00579.20 gi|294496382|ref|YP_003542875.1| - 1.6e-32 112.8 0.0 4.8e-19 68.5 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA-synt_2d PF01409.15 gi|294496383|ref|YP_003542876.1| - 2.6e-94 315.0 0.0 3.3e-94 314.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|294496383|ref|YP_003542876.1| - 4.9e-05 22.2 0.4 0.08 11.7 0.0 3.3 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) TrmB PF01978.14 gi|294496383|ref|YP_003542876.1| - 0.00069 19.2 0.3 0.42 10.3 0.0 3.0 3 0 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB tRNA-synt_2b PF00587.20 gi|294496383|ref|YP_003542876.1| - 0.0032 17.0 0.1 0.015 14.9 0.1 2.0 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) MarR_2 PF12802.2 gi|294496383|ref|YP_003542876.1| - 0.0035 16.9 0.1 0.44 10.2 0.0 2.8 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.1 gi|294496383|ref|YP_003542876.1| - 0.0057 16.4 0.4 0.93 9.3 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DUF4364 PF14277.1 gi|294496383|ref|YP_003542876.1| - 0.02 14.4 1.0 0.084 12.4 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) DUF362 PF04015.7 gi|294496384|ref|YP_003542877.1| - 2.1e-59 200.4 0.1 2.7e-59 200.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|294496384|ref|YP_003542877.1| - 1.2e-09 37.3 21.7 8.5e-08 31.4 4.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|294496384|ref|YP_003542877.1| - 1.6e-08 34.1 14.8 2.8e-08 33.4 10.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294496384|ref|YP_003542877.1| - 2.4e-08 33.4 19.0 1.4e-05 24.7 3.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294496384|ref|YP_003542877.1| - 7.5e-07 28.7 5.6 7.5e-07 28.7 3.9 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294496384|ref|YP_003542877.1| - 8.1e-07 29.3 16.7 1.5e-06 28.4 11.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294496384|ref|YP_003542877.1| - 1.1e-06 28.6 6.9 0.001 19.0 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294496384|ref|YP_003542877.1| - 8e-06 26.0 15.3 1.5e-05 25.1 10.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294496384|ref|YP_003542877.1| - 0.0021 17.8 15.0 0.0056 16.5 10.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294496384|ref|YP_003542877.1| - 0.0021 18.7 1.8 0.0021 18.7 1.2 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|294496384|ref|YP_003542877.1| - 0.0037 17.4 2.6 0.0037 17.4 1.8 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|294496384|ref|YP_003542877.1| - 0.01 16.3 3.7 0.01 16.3 2.6 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|294496384|ref|YP_003542877.1| - 0.042 14.1 16.5 0.043 14.1 2.3 2.4 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|294496384|ref|YP_003542877.1| - 0.19 11.6 7.1 0.47 10.3 4.9 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|294496384|ref|YP_003542877.1| - 3.6 8.0 18.9 0.32 11.4 3.8 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|294496384|ref|YP_003542877.1| - 4.4 8.1 24.3 0.88 10.2 5.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|294496384|ref|YP_003542877.1| - 4.4 7.7 17.8 3 8.3 3.1 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF531 PF04407.7 gi|294496385|ref|YP_003542878.1| - 6.6e-71 237.7 0.0 7.5e-71 237.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) Acetyltransf_7 PF13508.1 gi|294496386|ref|YP_003542879.1| - 1.4e-10 41.1 0.0 2.3e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|294496386|ref|YP_003542879.1| - 3.7e-09 36.5 0.0 5.2e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|294496386|ref|YP_003542879.1| - 1.1e-06 28.6 0.0 1.5e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|294496386|ref|YP_003542879.1| - 0.0026 17.6 0.2 0.0052 16.6 0.0 1.6 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase FR47 PF08445.5 gi|294496386|ref|YP_003542879.1| - 0.0028 17.3 0.0 0.013 15.2 0.0 2.0 1 1 0 1 1 1 1 FR47-like protein HCV_env PF01539.12 gi|294496386|ref|YP_003542879.1| - 0.0064 15.9 0.1 0.0079 15.6 0.0 1.2 1 0 0 1 1 1 1 Hepatitis C virus envelope glycoprotein E1 Acetyltransf_9 PF13527.1 gi|294496386|ref|YP_003542879.1| - 0.028 14.2 0.0 0.24 11.2 0.0 2.2 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|294496386|ref|YP_003542879.1| - 0.13 11.8 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Pribosyltran PF00156.22 gi|294496387|ref|YP_003542880.1| - 4.8e-22 77.9 0.3 7e-22 77.4 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|294496387|ref|YP_003542880.1| - 9.6e-06 24.9 0.0 1.2e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|294496387|ref|YP_003542880.1| - 0.0017 17.6 0.0 0.0024 17.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Diphthamide_syn PF01866.12 gi|294496388|ref|YP_003542881.1| - 4.4e-101 338.1 0.0 5.1e-101 337.9 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein DUF1847 PF08901.6 gi|294496388|ref|YP_003542881.1| - 0.14 11.6 1.0 0.51 9.8 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1847) PrmA PF06325.8 gi|294496389|ref|YP_003542882.1| - 8.1e-17 61.2 0.1 1.1e-16 60.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|294496389|ref|YP_003542882.1| - 4.9e-13 48.8 0.0 6.3e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|294496389|ref|YP_003542882.1| - 1.5e-11 44.3 0.0 2.2e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|294496389|ref|YP_003542882.1| - 4.7e-10 39.2 0.0 8.4e-10 38.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|294496389|ref|YP_003542882.1| - 3.3e-09 36.5 0.1 4.8e-09 36.0 0.1 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|294496389|ref|YP_003542882.1| - 8.1e-08 32.8 0.0 1.3e-07 32.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|294496389|ref|YP_003542882.1| - 1.4e-05 24.8 0.0 1.7e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|294496389|ref|YP_003542882.1| - 0.00061 18.9 0.0 0.001 18.2 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_11 PF08241.7 gi|294496389|ref|YP_003542882.1| - 0.00069 20.0 0.1 0.0015 18.9 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Met_10 PF02475.11 gi|294496389|ref|YP_003542882.1| - 0.00074 19.1 0.0 0.00097 18.7 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.1 gi|294496389|ref|YP_003542882.1| - 0.0011 19.3 0.0 0.0024 18.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|294496389|ref|YP_003542882.1| - 0.003 16.9 0.0 0.0048 16.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_32 PF13679.1 gi|294496389|ref|YP_003542882.1| - 0.0054 16.4 0.0 0.0074 15.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|294496389|ref|YP_003542882.1| - 0.042 13.3 0.1 0.071 12.6 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase FmrO PF07091.6 gi|294496389|ref|YP_003542882.1| - 0.058 12.3 0.0 0.091 11.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_12 PF08242.7 gi|294496389|ref|YP_003542882.1| - 0.07 13.6 0.0 0.12 12.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain AviRa PF11599.3 gi|294496389|ref|YP_003542882.1| - 0.11 11.4 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 RRNA methyltransferase AviRa ECR1_N PF14382.1 gi|294496390|ref|YP_003542883.1| - 6.3e-12 44.5 0.2 1.1e-11 43.8 0.1 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region S1 PF00575.18 gi|294496390|ref|YP_003542883.1| - 1e-05 25.4 2.9 0.0019 18.2 0.1 2.7 2 0 0 2 2 2 2 S1 RNA binding domain zf-NADH-PPase PF09297.6 gi|294496390|ref|YP_003542883.1| - 0.0024 17.3 2.2 0.0048 16.3 1.5 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain HypA PF01155.14 gi|294496390|ref|YP_003542883.1| - 0.0054 16.4 0.9 0.01 15.4 0.6 1.6 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Trm112p PF03966.11 gi|294496390|ref|YP_003542883.1| - 0.012 15.9 2.5 0.46 10.8 0.2 2.6 2 1 0 2 2 2 0 Trm112p-like protein DZR PF12773.2 gi|294496390|ref|YP_003542883.1| - 0.016 15.0 0.3 0.029 14.1 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Cupin_7 PF12973.2 gi|294496390|ref|YP_003542883.1| - 0.019 14.7 0.1 0.034 13.9 0.1 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain Vfa1 PF08432.5 gi|294496390|ref|YP_003542883.1| - 0.023 14.7 12.1 0.031 14.2 8.4 1.2 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 OrfB_Zn_ribbon PF07282.6 gi|294496390|ref|YP_003542883.1| - 0.07 12.8 0.2 0.18 11.5 0.1 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|294496390|ref|YP_003542883.1| - 0.12 11.6 4.1 2 7.7 0.4 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|294496390|ref|YP_003542883.1| - 0.27 10.9 2.5 0.38 10.5 0.5 1.9 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DNA_RNApol_7kD PF03604.8 gi|294496390|ref|YP_003542883.1| - 0.38 10.2 3.7 0.75 9.3 2.5 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit EXOSC1 PF10447.4 gi|294496390|ref|YP_003542883.1| - 0.87 9.5 7.6 1.2 9.1 2.0 3.0 2 2 0 2 2 2 0 Exosome component EXOSC1/CSL4 Sec62 PF03839.11 gi|294496390|ref|YP_003542883.1| - 4.1 6.7 11.5 6.1 6.1 8.0 1.2 1 0 0 1 1 1 0 Translocation protein Sec62 RNA_pol_L_2 PF13656.1 gi|294496391|ref|YP_003542884.1| - 1.2e-21 75.8 0.0 1.5e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|294496391|ref|YP_003542884.1| - 1.7e-09 36.6 0.0 2.2e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Dynein_heavy PF03028.10 gi|294496391|ref|YP_003542884.1| - 0.096 10.7 0.0 0.1 10.6 0.0 1.0 1 0 0 1 1 1 0 Dynein heavy chain and region D6 of dynein motor SLA_LP_auto_ag PF05889.8 gi|294496392|ref|YP_003542885.1| - 6.6e-48 163.1 0.0 2.8e-47 161.0 0.0 1.9 1 1 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|294496392|ref|YP_003542885.1| - 1.5e-17 63.4 0.0 2.2e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|294496392|ref|YP_003542885.1| - 1.2e-09 37.6 0.0 1.7e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|294496392|ref|YP_003542885.1| - 2.4e-05 23.5 0.0 4.6e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.15 gi|294496392|ref|YP_003542885.1| - 0.00099 17.7 0.0 0.0026 16.3 0.0 1.5 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Beta_elim_lyase PF01212.16 gi|294496392|ref|YP_003542885.1| - 0.0017 17.5 0.0 0.0024 17.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.14 gi|294496392|ref|YP_003542885.1| - 0.0031 16.0 0.0 0.005 15.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Rhodanese PF00581.15 gi|294496393|ref|YP_003542886.1| - 1.9e-39 134.4 0.7 2.2e-14 53.7 0.0 3.2 3 0 0 3 3 3 3 Rhodanese-like domain Nup35_RRM PF05172.8 gi|294496393|ref|YP_003542886.1| - 0.15 11.7 0.0 0.45 10.2 0.0 1.8 2 0 0 2 2 2 0 Nup53/35/40-type RNA recognition motif Methyltransf_33 PF10017.4 gi|294496394|ref|YP_003542887.1| - 1.1e-41 141.6 0.2 1.7e-41 141.0 0.1 1.2 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent DUF4037 PF13228.1 gi|294496394|ref|YP_003542887.1| - 0.081 13.1 0.0 6.4 7.0 0.0 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4037) Aminotran_5 PF00266.14 gi|294496395|ref|YP_003542888.1| - 4.5e-131 436.9 0.2 5.1e-131 436.8 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|294496395|ref|YP_003542888.1| - 5.4e-10 38.8 0.1 7.9e-10 38.2 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|294496395|ref|YP_003542888.1| - 2.5e-09 36.5 0.1 4.2e-09 35.8 0.1 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II SLA_LP_auto_ag PF05889.8 gi|294496395|ref|YP_003542888.1| - 2.2e-06 26.4 0.4 8e-06 24.5 0.3 1.9 1 1 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Beta_elim_lyase PF01212.16 gi|294496395|ref|YP_003542888.1| - 4.8e-05 22.6 0.1 6e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|294496395|ref|YP_003542888.1| - 5e-05 21.7 0.1 7.7e-05 21.1 0.1 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.14 gi|294496395|ref|YP_003542888.1| - 0.0019 16.7 0.1 0.0031 16.0 0.1 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain SufE PF02657.10 gi|294496396|ref|YP_003542889.1| - 3e-32 110.8 0.0 3.3e-32 110.7 0.0 1.0 1 0 0 1 1 1 1 Fe-S metabolism associated domain HTH_45 PF14947.1 gi|294496397|ref|YP_003542890.1| - 1.9e-05 24.3 0.0 2.8e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.2 gi|294496397|ref|YP_003542890.1| - 0.0001 22.0 0.0 0.00013 21.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HemN_C PF06969.11 gi|294496397|ref|YP_003542890.1| - 0.071 13.1 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 HemN C-terminal domain B-block_TFIIIC PF04182.7 gi|294496397|ref|YP_003542890.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DZR PF12773.2 gi|294496398|ref|YP_003542891.1| - 0.075 12.8 0.7 0.091 12.5 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF1289 PF06945.8 gi|294496398|ref|YP_003542891.1| - 0.15 11.5 3.1 0.36 10.3 2.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1289) stn_TNFRSF12A PF12191.3 gi|294496398|ref|YP_003542891.1| - 0.22 11.5 1.8 0.2 11.6 1.3 1.3 1 1 0 1 1 1 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain zf-MYND PF01753.13 gi|294496398|ref|YP_003542891.1| - 0.32 10.9 2.5 0.55 10.1 1.7 1.3 1 0 0 1 1 1 0 MYND finger A2L_zn_ribbon PF08792.5 gi|294496398|ref|YP_003542891.1| - 2.2 7.8 5.1 44 3.7 3.1 2.8 2 1 0 2 2 2 0 A2L zinc ribbon domain Cyt-b5 PF00173.23 gi|294496399|ref|YP_003542892.1| - 1.4e-07 31.1 0.1 1.9e-07 30.7 0.1 1.2 1 0 0 1 1 1 1 Cytochrome b5-like Heme/Steroid binding domain PALP PF00291.20 gi|294496400|ref|YP_003542893.1| - 1.9e-21 76.5 0.2 2.5e-21 76.1 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADK_lid PF05191.9 gi|294496400|ref|YP_003542893.1| - 0.098 12.3 0.4 0.25 11.0 0.3 1.7 1 1 0 1 1 1 0 Adenylate kinase, active site lid zinc_ribbon_2 PF13240.1 gi|294496400|ref|YP_003542893.1| - 0.1 12.0 0.7 0.2 11.1 0.5 1.5 1 0 0 1 1 1 0 zinc-ribbon domain TPP_enzyme_N PF02776.13 gi|294496401|ref|YP_003542894.1| - 1e-09 38.1 0.0 1.2e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|294496402|ref|YP_003542895.1| - 2.2e-21 76.0 0.5 3.8e-21 75.2 0.3 1.3 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|294496402|ref|YP_003542895.1| - 0.052 12.4 0.3 0.066 12.1 0.2 1.2 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase DUF39 PF01837.11 gi|294496403|ref|YP_003542896.1| - 7.4e-100 333.9 0.0 8.4e-100 333.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF39 Fer4_7 PF12838.2 gi|294496403|ref|YP_003542896.1| - 2.4e-05 24.6 8.1 0.00013 22.2 6.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294496403|ref|YP_003542896.1| - 0.0029 17.3 9.5 0.048 13.4 7.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|294496403|ref|YP_003542896.1| - 0.0071 16.7 0.1 0.0071 16.7 0.1 3.0 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|294496403|ref|YP_003542896.1| - 0.036 14.1 7.7 0.23 11.5 0.2 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294496403|ref|YP_003542896.1| - 0.1 12.5 9.6 0.76 9.8 0.6 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|294496403|ref|YP_003542896.1| - 0.11 13.0 0.1 0.11 13.0 0.1 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|294496403|ref|YP_003542896.1| - 0.26 11.5 10.2 0.6 10.4 7.1 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|294496403|ref|YP_003542896.1| - 0.54 10.6 11.1 3.5 8.0 1.5 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294496403|ref|YP_003542896.1| - 0.58 10.0 11.5 3.6 7.5 1.5 2.5 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|294496403|ref|YP_003542896.1| - 0.88 9.2 10.4 2.9 7.6 0.5 3.0 2 1 0 2 2 2 0 4Fe-4S binding domain Na_H_Exchanger PF00999.16 gi|294496404|ref|YP_003542897.1| - 1.6e-78 263.9 52.1 2.2e-78 263.4 36.1 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|294496404|ref|YP_003542897.1| - 1.4e-24 86.2 0.1 1.5e-23 83.0 0.0 2.3 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|294496404|ref|YP_003542897.1| - 6.9e-18 64.0 2.1 1.2e-17 63.2 0.4 2.3 2 0 0 2 2 2 1 TrkA-C domain 2-Hacid_dh_C PF02826.14 gi|294496404|ref|YP_003542897.1| - 0.027 13.6 0.0 0.055 12.6 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF1538 PF07556.6 gi|294496405|ref|YP_003542898.1| - 1.1e-68 230.5 24.1 1.3e-68 230.2 16.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) DUF1538 PF07556.6 gi|294496406|ref|YP_003542899.1| - 1.3e-69 233.4 22.8 1.5e-69 233.2 15.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) CopD PF05425.8 gi|294496406|ref|YP_003542899.1| - 0.011 15.9 1.9 0.011 15.9 1.3 2.8 1 1 1 2 2 2 0 Copper resistance protein D P-II PF00543.17 gi|294496407|ref|YP_003542900.1| - 0.00013 22.3 0.3 0.00017 22.0 0.2 1.1 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF1797 PF08796.5 gi|294496408|ref|YP_003542901.1| - 0.00057 19.6 0.5 0.0018 18.1 0.3 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1797) tRNA-synt_1b PF00579.20 gi|294496409|ref|YP_003542902.1| - 1.8e-54 184.8 0.0 2e-54 184.6 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|294496409|ref|YP_003542902.1| - 0.00032 19.4 0.0 0.12 11.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (K) Msg2_C PF12373.3 gi|294496409|ref|YP_003542902.1| - 0.055 12.6 0.1 0.12 11.6 0.0 1.5 1 0 0 1 1 1 0 Major surface glycoprotein 2 C terminal Thg1C PF14413.1 gi|294496410|ref|YP_003542903.1| - 4.2e-29 100.6 0.8 5.1e-29 100.4 0.1 1.4 2 0 0 2 2 2 1 Thg1 C terminal domain Thg1 PF04446.7 gi|294496410|ref|YP_003542903.1| - 7.4e-27 93.6 0.3 1.2e-26 92.9 0.2 1.4 1 0 0 1 1 1 1 tRNAHis guanylyltransferase PRC PF05239.11 gi|294496411|ref|YP_003542904.1| - 7.1e-13 48.2 2.4 9.1e-13 47.8 1.7 1.1 1 0 0 1 1 1 1 PRC-barrel domain RNase_H_2 PF13482.1 gi|294496412|ref|YP_003542905.1| - 3.9e-37 127.5 0.1 6.6e-37 126.8 0.0 1.4 1 0 0 1 1 1 1 RNase_H superfamily HHH_5 PF14520.1 gi|294496412|ref|YP_003542905.1| - 0.0028 17.7 0.0 0.0066 16.6 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_B_exo1 PF03104.14 gi|294496412|ref|YP_003542905.1| - 0.0036 16.2 0.1 0.007 15.2 0.1 1.4 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|294496412|ref|YP_003542905.1| - 0.042 13.3 0.1 0.63 9.5 0.0 2.2 1 1 1 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB IMS_HHH PF11798.3 gi|294496412|ref|YP_003542905.1| - 0.12 12.4 0.7 22 5.3 0.2 2.9 3 0 0 3 3 3 0 IMS family HHH motif UvrC_HhH_N PF08459.6 gi|294496413|ref|YP_003542906.1| - 1.6e-55 186.8 0.0 4.1e-55 185.5 0.0 1.7 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.19 gi|294496413|ref|YP_003542906.1| - 1.2e-12 47.9 3.1 1.9e-12 47.3 0.4 2.4 2 0 0 2 2 2 1 GIY-YIG catalytic domain UVR PF02151.14 gi|294496413|ref|YP_003542906.1| - 3.2e-09 36.0 0.8 8.2e-09 34.6 0.1 2.2 2 0 0 2 2 2 1 UvrB/uvrC motif HHH_2 PF12826.2 gi|294496413|ref|YP_003542906.1| - 5e-09 35.9 0.5 5e-09 35.9 0.4 2.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|294496413|ref|YP_003542906.1| - 1e-07 32.0 1.1 1e-07 32.0 0.7 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain 5_3_exonuc PF01367.15 gi|294496413|ref|YP_003542906.1| - 2.4e-05 24.4 1.3 8.1e-05 22.8 0.1 2.5 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH PF00633.18 gi|294496413|ref|YP_003542906.1| - 0.0042 16.7 2.5 1.2 9.0 0.0 3.1 3 0 0 3 3 3 2 Helix-hairpin-helix motif T5orf172 PF10544.4 gi|294496413|ref|YP_003542906.1| - 0.077 13.3 0.2 0.077 13.3 0.1 2.1 2 0 0 2 2 2 0 T5orf172 domain Usp PF00582.21 gi|294496414|ref|YP_003542907.1| - 4.7e-32 111.1 0.0 5.2e-32 110.9 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|294496414|ref|YP_003542907.1| - 0.13 11.5 0.0 0.45 9.7 0.0 1.7 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel CxxCxxCC PF03692.10 gi|294496415|ref|YP_003542908.1| - 9.7e-12 45.1 2.9 1.9e-11 44.2 2.0 1.6 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Radical_SAM PF04055.16 gi|294496416|ref|YP_003542909.1| - 3.1e-24 86.0 0.1 4.4e-24 85.5 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|294496416|ref|YP_003542909.1| - 1.1e-06 28.4 0.0 2.1e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain Peptidase_M50 PF02163.17 gi|294496417|ref|YP_003542910.1| - 1.3e-15 56.8 8.6 1.3e-15 56.8 6.0 3.3 2 1 0 2 2 2 1 Peptidase family M50 DUF126 PF01989.11 gi|294496418|ref|YP_003542911.1| - 4.4e-35 119.2 0.1 4.4e-35 119.2 0.1 1.5 2 0 0 2 2 2 1 Protein of unknown function DUF126 DUF521 PF04412.8 gi|294496419|ref|YP_003542912.1| - 1.7e-151 504.3 0.7 1.9e-151 504.1 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) zinc_ribbon_4 PF13717.1 gi|294496419|ref|YP_003542912.1| - 0.019 14.6 5.2 14 5.4 0.1 4.5 5 0 0 5 5 5 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|294496419|ref|YP_003542912.1| - 0.021 14.4 5.5 12 5.6 0.0 4.4 5 0 0 5 5 5 0 zinc-ribbon domain CoA_binding_2 PF13380.1 gi|294496419|ref|YP_003542912.1| - 0.083 13.0 0.2 0.21 11.7 0.1 1.6 1 0 0 1 1 1 0 CoA binding domain UbiD PF01977.11 gi|294496420|ref|YP_003542913.1| - 7e-122 406.7 0.3 8e-122 406.5 0.2 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CofC PF01983.11 gi|294496420|ref|YP_003542913.1| - 0.054 12.4 0.1 0.1 11.5 0.1 1.4 1 0 0 1 1 1 0 Guanylyl transferase CofC like AP_endonuc_2 PF01261.19 gi|294496422|ref|YP_003542915.1| - 2.9e-26 92.0 0.1 3.7e-26 91.7 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Glyco_hydro_97 PF10566.4 gi|294496422|ref|YP_003542915.1| - 0.0034 16.5 0.0 0.0045 16.1 0.0 1.1 1 0 0 1 1 1 1 Glycoside hydrolase 97 HMGL-like PF00682.14 gi|294496422|ref|YP_003542915.1| - 0.056 13.0 0.0 0.084 12.5 0.0 1.3 1 0 0 1 1 1 0 HMGL-like UvdE PF03851.9 gi|294496422|ref|YP_003542915.1| - 0.13 11.2 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 UV-endonuclease UvdE MtrE PF04206.7 gi|294496423|ref|YP_003542916.1| - 2.2e-128 426.9 12.9 2.5e-128 426.7 8.9 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E DUF3270 PF11674.3 gi|294496423|ref|YP_003542916.1| - 1.1 9.3 3.3 0.77 9.8 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3270) IncA PF04156.9 gi|294496423|ref|YP_003542916.1| - 2.2 7.8 8.3 9.8 5.7 0.0 2.9 3 0 0 3 3 3 0 IncA protein DUF2207 PF09972.4 gi|294496423|ref|YP_003542916.1| - 3.5 6.1 5.3 1.6 7.1 0.1 2.2 2 1 0 2 2 2 0 Predicted membrane protein (DUF2207) NfeD PF01957.13 gi|294496423|ref|YP_003542916.1| - 4.8 7.3 14.7 0.74 9.9 0.2 3.6 3 1 0 3 3 3 0 NfeD-like C-terminal, partner-binding MtrD PF04207.7 gi|294496424|ref|YP_003542917.1| - 9.8e-106 352.1 29.9 1.3e-105 351.7 20.7 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrC PF04211.8 gi|294496425|ref|YP_003542918.1| - 2.3e-93 312.0 31.0 2.6e-93 311.8 21.5 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C MtrB PF05440.7 gi|294496426|ref|YP_003542919.1| - 2.2e-37 126.9 0.1 2.5e-37 126.8 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrF PF09472.5 gi|294496426|ref|YP_003542919.1| - 0.047 12.9 1.7 0.18 11.0 0.3 2.0 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrG PF04210.8 gi|294496426|ref|YP_003542919.1| - 5.4 6.7 8.9 18 5.0 3.6 2.1 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G MtrA PF04208.9 gi|294496427|ref|YP_003542920.1| - 1.4e-74 249.3 1.3 1.9e-74 248.9 0.9 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.5 gi|294496428|ref|YP_003542921.1| - 4e-30 102.8 0.7 4.5e-30 102.6 0.5 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) YqfD PF06898.6 gi|294496428|ref|YP_003542921.1| - 0.057 12.1 0.2 0.058 12.0 0.2 1.0 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD Syndecan PF01034.15 gi|294496428|ref|YP_003542921.1| - 0.094 12.3 0.3 0.12 12.0 0.2 1.2 1 0 0 1 1 1 0 Syndecan domain MtrG PF04210.8 gi|294496429|ref|YP_003542922.1| - 1.8e-28 98.0 0.5 2.2e-28 97.6 0.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G YqfD PF06898.6 gi|294496429|ref|YP_003542922.1| - 0.062 12.0 0.0 0.07 11.8 0.0 1.0 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD Sigma70_r1_1 PF03979.9 gi|294496429|ref|YP_003542922.1| - 0.092 12.6 0.5 0.12 12.3 0.3 1.2 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 DASH_Ask1 PF08655.5 gi|294496429|ref|YP_003542922.1| - 0.095 12.5 0.1 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 DASH complex subunit Ask1 TIM PF00121.13 gi|294496429|ref|YP_003542922.1| - 0.14 11.2 0.1 0.18 10.8 0.0 1.1 1 0 0 1 1 1 0 Triosephosphate isomerase Osmo_CC PF08946.5 gi|294496429|ref|YP_003542922.1| - 0.46 10.5 2.2 0.94 9.5 1.6 1.5 1 1 0 1 1 1 0 Osmosensory transporter coiled coil MtrH PF02007.13 gi|294496430|ref|YP_003542923.1| - 4.6e-131 436.2 1.1 5.2e-131 436.0 0.8 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit HhH-GPD PF00730.20 gi|294496431|ref|YP_003542924.1| - 3.7e-22 78.6 0.1 5.5e-22 78.1 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|294496431|ref|YP_003542924.1| - 8.7e-10 37.7 0.0 3.7e-09 35.7 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|294496431|ref|YP_003542924.1| - 0.0026 17.8 5.4 0.0048 17.0 3.7 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|294496431|ref|YP_003542924.1| - 0.021 14.9 0.0 0.078 13.1 0.0 1.9 1 1 0 1 1 1 0 Helix-hairpin-helix domain DUF2400 PF09674.5 gi|294496431|ref|YP_003542924.1| - 0.024 14.3 0.1 0.26 10.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) DUF4139 PF13598.1 gi|294496432|ref|YP_003542925.1| - 3.4e-07 29.8 0.6 0.004 16.4 0.2 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF4139) DUF4140 PF13600.1 gi|294496432|ref|YP_003542925.1| - 0.0011 19.3 0.0 0.0026 18.1 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of unknown function (DUF4140) CCG PF02754.11 gi|294496433|ref|YP_003542926.1| - 5.8e-34 115.9 1.4 4.5e-18 65.0 0.6 2.2 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|294496434|ref|YP_003542927.1| - 5e-13 48.8 8.5 8.6e-13 48.1 5.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|294496434|ref|YP_003542927.1| - 3.7e-09 36.8 8.8 5.7e-09 36.1 6.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294496434|ref|YP_003542927.1| - 1.1e-07 31.5 7.5 1.8e-07 30.8 5.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294496434|ref|YP_003542927.1| - 1.2e-06 28.8 10.4 7.4e-06 26.2 7.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294496434|ref|YP_003542927.1| - 2e-06 27.9 10.3 1.3e-05 25.3 7.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294496434|ref|YP_003542927.1| - 4.9e-05 23.6 11.7 0.00048 20.5 1.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294496434|ref|YP_003542927.1| - 0.00017 21.3 9.8 0.028 14.3 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|294496434|ref|YP_003542927.1| - 0.00018 20.9 13.2 0.007 15.9 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|294496434|ref|YP_003542927.1| - 0.00026 20.7 5.8 0.00051 19.8 4.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294496434|ref|YP_003542927.1| - 0.13 12.6 12.6 0.45 10.9 2.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|294496434|ref|YP_003542927.1| - 0.15 12.8 14.3 2.1 9.1 2.6 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|294496434|ref|YP_003542927.1| - 0.49 10.0 5.9 2.1 8.0 0.4 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.2 gi|294496434|ref|YP_003542927.1| - 0.49 11.0 16.5 0.3 11.7 2.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|294496434|ref|YP_003542927.1| - 2.9 8.3 10.6 5.4 7.4 1.1 2.6 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|294496434|ref|YP_003542927.1| - 4.3 7.3 11.8 1.8 8.5 0.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|294496434|ref|YP_003542927.1| - 4.4 7.9 9.2 1.8 9.2 1.0 2.5 2 1 0 2 2 2 0 4Fe-4S single cluster domain Gln-synt_C PF00120.19 gi|294496435|ref|YP_003542928.1| - 5.6e-104 346.8 0.0 7.1e-104 346.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|294496435|ref|YP_003542928.1| - 8.7e-29 98.9 0.1 2e-28 97.7 0.1 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain GATase_2 PF00310.16 gi|294496436|ref|YP_003542929.1| - 7.3e-25 87.4 0.0 6e-23 81.1 0.0 2.0 2 0 0 2 2 2 2 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|294496436|ref|YP_003542929.1| - 2.8e-18 66.1 0.0 4e-17 62.4 0.0 2.1 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|294496436|ref|YP_003542929.1| - 1.4e-10 40.9 0.0 2.7e-09 36.8 0.0 2.2 1 1 0 1 1 1 1 Glutamine amidotransferase domain Glu_synthase PF01645.12 gi|294496437|ref|YP_003542930.1| - 7.5e-136 452.8 0.1 7.5e-136 452.8 0.0 1.4 2 0 0 2 2 1 1 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|294496437|ref|YP_003542930.1| - 7.5e-12 44.7 5.2 2.3e-08 33.2 1.4 3.1 3 0 0 3 3 3 2 FMN-dependent dehydrogenase Glu_syn_central PF04898.9 gi|294496437|ref|YP_003542930.1| - 2.7e-10 39.9 0.1 4.1e-05 23.0 0.0 2.3 2 0 0 2 2 2 2 Glutamate synthase central domain Fer4_7 PF12838.2 gi|294496437|ref|YP_003542930.1| - 1.3e-09 38.2 15.1 1.2e-07 32.0 7.4 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294496437|ref|YP_003542930.1| - 8.1e-09 35.1 18.8 1.1e-05 25.0 10.1 3.5 2 1 1 3 3 3 3 4Fe-4S dicluster domain IMPDH PF00478.20 gi|294496437|ref|YP_003542930.1| - 8.6e-09 34.7 3.8 2.7e-08 33.0 1.0 2.5 2 1 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain Fer4_9 PF13187.1 gi|294496437|ref|YP_003542930.1| - 1.6e-08 34.7 18.5 1.6e-08 34.6 8.0 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294496437|ref|YP_003542930.1| - 3.9e-08 33.9 10.0 0.00029 21.5 0.2 3.5 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain NMO PF03060.10 gi|294496437|ref|YP_003542930.1| - 7.3e-08 31.9 4.3 7.3e-08 31.9 3.0 1.6 2 0 0 2 2 2 1 Nitronate monooxygenase Fer4 PF00037.22 gi|294496437|ref|YP_003542930.1| - 8.5e-08 31.4 18.2 5.7e-06 25.6 1.0 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294496437|ref|YP_003542930.1| - 3.2e-06 26.7 22.6 1.4e-05 24.7 1.4 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|294496437|ref|YP_003542930.1| - 3.8e-06 26.6 5.5 3.8e-06 26.6 3.8 2.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294496437|ref|YP_003542930.1| - 5.6e-06 26.1 10.9 5.6e-06 26.1 7.6 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294496437|ref|YP_003542930.1| - 1.9e-05 24.2 20.6 0.00033 20.3 1.5 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|294496437|ref|YP_003542930.1| - 2e-05 24.8 8.8 0.084 13.2 0.1 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294496437|ref|YP_003542930.1| - 7e-05 22.7 17.3 0.019 15.0 10.4 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain DHO_dh PF01180.16 gi|294496437|ref|YP_003542930.1| - 0.00022 20.3 0.7 0.0034 16.3 0.4 2.2 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase His_biosynth PF00977.16 gi|294496437|ref|YP_003542930.1| - 0.00052 19.3 0.3 0.00098 18.4 0.2 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|294496437|ref|YP_003542930.1| - 0.016 14.4 1.8 0.62 9.2 0.6 2.5 2 1 1 3 3 2 0 PcrB family Fer4_4 PF12800.2 gi|294496437|ref|YP_003542930.1| - 0.047 14.0 2.4 0.047 14.0 1.6 4.1 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|294496437|ref|YP_003542930.1| - 0.047 14.2 17.0 0.4 11.2 7.7 3.3 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|294496437|ref|YP_003542930.1| - 0.14 12.5 17.7 0.21 12.0 1.1 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|294496437|ref|YP_003542930.1| - 0.27 11.0 4.2 0.75 9.6 2.9 1.7 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_18 PF13746.1 gi|294496437|ref|YP_003542930.1| - 1.3 9.4 22.7 1.7 9.1 2.8 3.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain GXGXG PF01493.14 gi|294496438|ref|YP_003542931.1| - 9e-35 119.5 10.4 1e-34 119.3 7.2 1.0 1 0 0 1 1 1 1 GXGXG motif FrhB_FdhB_C PF04432.8 gi|294496439|ref|YP_003542932.1| - 3.4e-38 130.5 0.1 6.4e-38 129.6 0.1 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|294496439|ref|YP_003542932.1| - 4.1e-19 68.2 0.0 8.4e-19 67.2 0.0 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_10 PF13237.1 gi|294496439|ref|YP_003542932.1| - 1.8e-07 30.8 9.4 4.8e-07 29.4 6.5 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|294496439|ref|YP_003542932.1| - 2e-07 30.3 2.7 2e-07 30.3 1.9 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|294496439|ref|YP_003542932.1| - 2.3e-06 27.2 2.1 2.3e-06 27.2 1.4 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294496439|ref|YP_003542932.1| - 5.1e-06 26.7 9.7 1.7e-05 25.0 6.7 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294496439|ref|YP_003542932.1| - 8.6e-06 25.9 9.4 8.6e-06 25.9 6.5 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294496439|ref|YP_003542932.1| - 3.3e-05 23.5 3.2 3.3e-05 23.5 2.2 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|294496439|ref|YP_003542932.1| - 0.00059 19.9 17.2 0.0026 17.9 1.5 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|294496439|ref|YP_003542932.1| - 0.00074 19.8 5.7 0.017 15.4 0.4 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294496439|ref|YP_003542932.1| - 0.00098 19.8 11.1 0.033 14.9 7.1 3.1 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|294496439|ref|YP_003542932.1| - 0.0019 18.7 4.5 0.044 14.3 0.5 3.4 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|294496439|ref|YP_003542932.1| - 0.01 16.2 10.2 0.024 15.0 0.9 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|294496439|ref|YP_003542932.1| - 0.011 15.7 13.5 0.022 14.8 7.1 2.6 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|294496439|ref|YP_003542932.1| - 0.047 14.0 7.1 0.48 10.8 0.6 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|294496439|ref|YP_003542932.1| - 0.065 13.8 8.7 0.065 13.8 6.0 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|294496439|ref|YP_003542932.1| - 0.26 11.1 13.8 0.046 13.5 1.7 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|294496439|ref|YP_003542932.1| - 0.45 10.4 5.7 0.31 10.9 2.2 2.0 2 1 0 2 2 2 0 4Fe-4S dicluster domain Exonuc_VII_L PF02601.10 gi|294496440|ref|YP_003542933.1| - 2e-79 267.0 0.0 3.8e-76 256.3 0.0 2.1 1 1 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.1 gi|294496440|ref|YP_003542933.1| - 1.2e-32 111.6 0.1 2.4e-32 110.7 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|294496440|ref|YP_003542933.1| - 2.9e-08 33.4 0.1 7e-08 32.2 0.0 1.7 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain RNA_pol_Rpb4 PF03874.11 gi|294496440|ref|YP_003542933.1| - 0.083 12.9 0.0 0.79 9.7 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase Rpb4 Exonuc_VII_S PF02609.11 gi|294496441|ref|YP_003542934.1| - 1.3e-19 69.6 5.4 1.7e-19 69.3 3.8 1.1 1 0 0 1 1 1 1 Exonuclease VII small subunit FAM180 PF15173.1 gi|294496441|ref|YP_003542934.1| - 0.14 11.9 0.5 0.19 11.4 0.3 1.4 1 1 0 1 1 1 0 FAM180 family DMPK_coil PF08826.5 gi|294496441|ref|YP_003542934.1| - 4.5 7.2 7.3 8.7 6.3 1.0 2.2 2 0 0 2 2 2 0 DMPK coiled coil domain like KaiC PF06745.8 gi|294496442|ref|YP_003542935.1| - 8.3e-71 237.7 7.5 1.8e-46 158.0 1.4 2.4 2 1 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|294496442|ref|YP_003542935.1| - 4.3e-14 52.3 0.0 4.3e-06 26.2 0.0 2.9 2 2 0 2 2 2 2 AAA domain DnaB_C PF03796.10 gi|294496442|ref|YP_003542935.1| - 3.7e-11 42.4 0.0 1.3e-05 24.2 0.0 2.3 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_14 PF13173.1 gi|294496442|ref|YP_003542935.1| - 1.8e-07 31.0 0.1 0.00014 21.8 0.0 3.1 2 2 0 2 2 2 1 AAA domain GvpD PF07088.6 gi|294496442|ref|YP_003542935.1| - 1.9e-07 29.7 3.1 0.1 10.8 0.0 4.2 4 1 1 5 5 5 3 GvpD gas vesicle protein IstB_IS21 PF01695.12 gi|294496442|ref|YP_003542935.1| - 2.1e-07 30.5 0.1 0.012 15.0 0.0 3.2 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_19 PF13245.1 gi|294496442|ref|YP_003542935.1| - 4.7e-07 29.4 0.0 0.0043 16.7 0.0 2.5 2 0 0 2 2 2 2 Part of AAA domain RecA PF00154.16 gi|294496442|ref|YP_003542935.1| - 8.6e-07 28.3 0.2 0.028 13.5 0.0 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_16 PF13191.1 gi|294496442|ref|YP_003542935.1| - 3e-06 27.3 0.0 0.026 14.5 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_18 PF13238.1 gi|294496442|ref|YP_003542935.1| - 3.2e-06 27.4 1.4 0.0047 17.2 0.0 2.8 2 1 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|294496442|ref|YP_003542935.1| - 4.4e-06 25.9 0.1 0.056 12.4 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|294496442|ref|YP_003542935.1| - 9.8e-06 25.7 0.0 0.013 15.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|294496442|ref|YP_003542935.1| - 2.2e-05 23.5 0.2 0.11 11.3 0.1 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein NACHT PF05729.7 gi|294496442|ref|YP_003542935.1| - 2.2e-05 24.1 0.0 0.035 13.7 0.0 2.6 2 0 0 2 2 2 2 NACHT domain PAXNEB PF05625.6 gi|294496442|ref|YP_003542935.1| - 5.5e-05 22.1 2.6 0.042 12.6 0.2 3.1 2 1 1 3 3 3 1 PAXNEB protein Zeta_toxin PF06414.7 gi|294496442|ref|YP_003542935.1| - 8.1e-05 21.8 0.1 0.059 12.4 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin PhoH PF02562.11 gi|294496442|ref|YP_003542935.1| - 0.00014 21.1 0.0 0.13 11.4 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein Rad51 PF08423.6 gi|294496442|ref|YP_003542935.1| - 0.00024 20.0 0.0 0.015 14.2 0.0 2.4 2 0 0 2 2 2 1 Rad51 Sigma54_activat PF00158.21 gi|294496442|ref|YP_003542935.1| - 0.0003 20.3 0.1 0.45 9.9 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain TrwB_AAD_bind PF10412.4 gi|294496442|ref|YP_003542935.1| - 0.00031 19.5 0.3 0.017 13.7 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.2 gi|294496442|ref|YP_003542935.1| - 0.00032 20.2 0.0 0.064 12.6 0.0 2.3 2 0 0 2 2 2 1 AAA-like domain AAA_24 PF13479.1 gi|294496442|ref|YP_003542935.1| - 0.00041 20.0 0.2 0.11 12.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|294496442|ref|YP_003542935.1| - 0.00044 20.4 0.1 1 9.5 0.0 3.0 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) ResIII PF04851.10 gi|294496442|ref|YP_003542935.1| - 0.00057 19.7 0.0 0.14 11.9 0.0 2.7 3 0 0 3 3 2 1 Type III restriction enzyme, res subunit MEDS PF14417.1 gi|294496442|ref|YP_003542935.1| - 0.00065 18.8 0.0 0.0013 17.8 0.0 1.4 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Zot PF05707.7 gi|294496442|ref|YP_003542935.1| - 0.00065 19.2 0.0 0.22 10.9 0.0 2.5 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) FtsK_SpoIIIE PF01580.13 gi|294496442|ref|YP_003542935.1| - 0.00067 19.1 0.2 0.47 9.9 0.1 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|294496442|ref|YP_003542935.1| - 0.0007 20.3 1.8 0.076 13.8 0.0 3.1 2 1 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|294496442|ref|YP_003542935.1| - 0.00082 19.1 0.0 0.0034 17.1 0.0 2.0 2 0 0 2 2 2 1 Archaeal ATPase cobW PF02492.14 gi|294496442|ref|YP_003542935.1| - 0.0018 17.7 0.5 0.49 9.8 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Hpr_kinase_C PF07475.7 gi|294496442|ref|YP_003542935.1| - 0.0019 17.5 3.0 0.65 9.2 0.1 3.4 3 0 0 3 3 3 1 HPr Serine kinase C-terminal domain RNA_helicase PF00910.17 gi|294496442|ref|YP_003542935.1| - 0.0038 17.3 0.0 1.3 9.1 0.0 2.6 2 0 0 2 2 2 1 RNA helicase CbiA PF01656.18 gi|294496442|ref|YP_003542935.1| - 0.0065 15.9 0.0 0.015 14.7 0.0 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.1 gi|294496442|ref|YP_003542935.1| - 0.0097 15.5 0.1 0.66 9.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|294496442|ref|YP_003542935.1| - 0.011 15.2 0.1 0.58 9.6 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.9 gi|294496442|ref|YP_003542935.1| - 0.017 14.8 0.2 1.8 8.2 0.0 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.10 gi|294496442|ref|YP_003542935.1| - 0.018 14.7 0.9 0.74 9.5 0.1 2.9 3 0 0 3 3 2 0 NTPase AAA_11 PF13086.1 gi|294496442|ref|YP_003542935.1| - 0.019 14.5 0.0 4.2 6.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain DAP3 PF10236.4 gi|294496442|ref|YP_003542935.1| - 0.02 13.8 0.0 2.2 7.1 0.0 2.4 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 TIP49 PF06068.8 gi|294496442|ref|YP_003542935.1| - 0.024 13.3 0.5 4.9 5.7 0.0 2.2 2 0 0 2 2 2 0 TIP49 C-terminus SRP54 PF00448.17 gi|294496442|ref|YP_003542935.1| - 0.028 13.8 0.1 0.065 12.6 0.0 1.7 2 0 0 2 2 1 0 SRP54-type protein, GTPase domain ArsA_ATPase PF02374.10 gi|294496442|ref|YP_003542935.1| - 0.03 13.3 0.2 0.069 12.1 0.0 1.8 2 0 0 2 2 2 0 Anion-transporting ATPase DEAD PF00270.24 gi|294496442|ref|YP_003542935.1| - 0.034 13.6 0.4 6.2 6.2 0.1 2.7 2 1 0 2 2 2 0 DEAD/DEAH box helicase MobB PF03205.9 gi|294496442|ref|YP_003542935.1| - 0.037 13.7 0.2 0.18 11.5 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|294496442|ref|YP_003542935.1| - 0.054 13.7 0.4 1.4 9.2 0.0 2.5 2 0 0 2 2 2 0 ABC transporter UPF0079 PF02367.12 gi|294496442|ref|YP_003542935.1| - 0.066 12.8 0.7 4.9 6.7 0.0 2.7 3 0 0 3 3 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_31 PF13614.1 gi|294496442|ref|YP_003542935.1| - 0.098 12.5 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|294496442|ref|YP_003542935.1| - 0.11 11.6 0.0 0.34 10.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF258 ArgK PF03308.11 gi|294496442|ref|YP_003542935.1| - 0.12 11.1 0.6 9.6 4.8 0.0 2.2 2 0 0 2 2 2 0 ArgK protein NB-ARC PF00931.17 gi|294496442|ref|YP_003542935.1| - 0.12 11.1 2.2 0.14 10.9 0.1 1.9 2 0 0 2 2 2 0 NB-ARC domain AAA_33 PF13671.1 gi|294496442|ref|YP_003542935.1| - 0.16 11.8 0.1 13 5.5 0.0 2.6 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|294496442|ref|YP_003542935.1| - 0.16 11.0 0.3 16 4.5 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Herpes_TK PF00693.13 gi|294496442|ref|YP_003542935.1| - 0.17 11.0 0.2 5.3 6.1 0.1 2.3 2 0 0 2 2 2 0 Thymidine kinase from herpesvirus OrfB_IS605 PF01385.14 gi|294496443|ref|YP_003542936.1| - 3.7e-45 154.0 7.2 6e-45 153.3 5.0 1.3 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.3 gi|294496443|ref|YP_003542936.1| - 6.2e-23 79.8 2.4 1.6e-22 78.5 1.7 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.6 gi|294496443|ref|YP_003542936.1| - 1.2e-21 76.1 0.7 2.4e-21 75.1 0.5 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|294496443|ref|YP_003542936.1| - 0.02 14.7 1.7 0.039 13.7 1.2 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Prok-RING_1 PF14446.1 gi|294496443|ref|YP_003542936.1| - 0.16 11.7 2.2 0.3 10.8 1.5 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-RanBP PF00641.13 gi|294496443|ref|YP_003542936.1| - 3.7 6.7 8.3 3.9 6.6 0.5 2.4 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others HTH_45 PF14947.1 gi|294496444|ref|YP_003542937.1| - 2.9e-07 30.1 0.2 3.6e-07 29.9 0.2 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.17 gi|294496444|ref|YP_003542937.1| - 1.5e-06 27.7 0.2 4.3e-06 26.3 0.1 1.7 1 1 1 2 2 2 1 MarR family MarR_2 PF12802.2 gi|294496444|ref|YP_003542937.1| - 9.8e-06 25.1 0.0 1.3e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|294496444|ref|YP_003542937.1| - 3.7e-05 23.0 0.3 7.2e-05 22.1 0.1 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|294496444|ref|YP_003542937.1| - 0.00014 21.3 0.0 0.00033 20.1 0.0 1.6 1 1 1 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|294496444|ref|YP_003542937.1| - 0.00021 20.9 0.2 0.00024 20.7 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|294496444|ref|YP_003542937.1| - 0.0054 16.5 0.1 0.0086 15.8 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|294496444|ref|YP_003542937.1| - 0.0064 16.7 0.0 0.0078 16.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|294496444|ref|YP_003542937.1| - 0.012 15.1 0.1 0.013 14.9 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit Rrf2 PF02082.15 gi|294496444|ref|YP_003542937.1| - 0.014 15.5 0.1 0.017 15.2 0.1 1.1 1 0 0 1 1 1 0 Transcriptional regulator HTH_DeoR PF08220.7 gi|294496444|ref|YP_003542937.1| - 0.021 14.3 0.1 0.047 13.2 0.0 1.6 1 1 1 2 2 2 0 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|294496444|ref|YP_003542937.1| - 0.047 13.3 0.1 0.066 12.8 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|294496444|ref|YP_003542937.1| - 0.055 13.4 0.1 0.071 13.0 0.1 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Mga PF08280.6 gi|294496444|ref|YP_003542937.1| - 0.061 13.0 0.1 0.09 12.5 0.1 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Nop PF01798.13 gi|294496444|ref|YP_003542937.1| - 0.083 12.1 0.1 0.1 11.9 0.1 1.2 1 0 0 1 1 1 0 Putative snoRNA binding domain HTH_1 PF00126.22 gi|294496444|ref|YP_003542937.1| - 0.092 12.5 0.0 0.15 11.7 0.0 1.5 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family FeoC PF09012.5 gi|294496444|ref|YP_003542937.1| - 0.1 12.3 0.3 0.2 11.4 0.2 1.5 1 1 0 1 1 1 0 FeoC like transcriptional regulator HTH_AsnC-type PF13404.1 gi|294496444|ref|YP_003542937.1| - 0.12 11.9 0.0 0.57 9.7 0.0 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain RseC_MucC PF04246.7 gi|294496445|ref|YP_003542938.1| - 1.7 8.2 7.6 0.19 11.2 1.4 1.8 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Rpr2 PF04032.11 gi|294496446|ref|YP_003542939.1| - 3.5e-18 65.2 2.9 4.9e-18 64.7 2.0 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF164 PF02591.10 gi|294496446|ref|YP_003542939.1| - 0.00078 19.2 2.5 0.0014 18.4 1.8 1.4 1 0 0 1 1 1 1 Putative zinc ribbon domain IBR PF01485.16 gi|294496446|ref|YP_003542939.1| - 0.3 10.9 4.0 0.39 10.6 2.2 1.6 1 1 0 1 1 1 0 IBR domain Lactamase_B_3 PF13483.1 gi|294496447|ref|YP_003542940.1| - 8.4e-30 103.6 0.1 1e-29 103.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|294496447|ref|YP_003542940.1| - 1.4e-15 57.3 0.0 1.9e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|294496447|ref|YP_003542940.1| - 7.7e-06 25.6 2.7 0.017 14.7 0.0 2.2 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily DUF1699 PF08004.6 gi|294496448|ref|YP_003542941.1| - 5.3e-62 207.1 1.0 5.9e-62 206.9 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) RhodobacterPufX PF11511.3 gi|294496449|ref|YP_003542942.1| - 3.6 7.0 4.7 5.8 6.3 2.9 1.7 1 1 1 2 2 2 0 Intrinsic membrane protein PufX DHH PF01368.15 gi|294496451|ref|YP_003542944.1| - 3.2e-17 62.5 0.3 5.1e-17 61.8 0.2 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|294496451|ref|YP_003542944.1| - 3.4e-13 49.0 0.8 7.2e-13 48.0 0.6 1.6 1 0 0 1 1 1 1 DHHA1 domain AstA PF04958.7 gi|294496451|ref|YP_003542944.1| - 0.11 10.9 0.0 0.19 10.1 0.0 1.3 1 0 0 1 1 1 0 Arginine N-succinyltransferase beta subunit DUF128 PF01995.11 gi|294496452|ref|YP_003542945.1| - 3.7e-90 300.9 3.0 4.2e-90 300.8 2.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF128 GPI PF06560.6 gi|294496453|ref|YP_003542946.1| - 1.1e-59 200.4 1.8 1.4e-59 200.1 1.2 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.6 gi|294496453|ref|YP_003542946.1| - 0.036 13.5 0.1 0.087 12.3 0.1 1.6 1 1 0 1 1 1 0 Cupin domain Cupin_1 PF00190.17 gi|294496453|ref|YP_003542946.1| - 0.15 11.4 0.1 0.24 10.8 0.1 1.3 1 0 0 1 1 1 0 Cupin Metallophos_2 PF12850.2 gi|294496454|ref|YP_003542947.1| - 5.8e-15 55.4 0.0 1e-14 54.6 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|294496454|ref|YP_003542947.1| - 3.8e-14 52.5 0.1 7.1e-14 51.6 0.1 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase CaMKII_AD PF08332.5 gi|294496454|ref|YP_003542947.1| - 0.058 13.2 0.1 2.5 8.0 0.0 2.4 2 0 0 2 2 2 0 Calcium/calmodulin dependent protein kinase II Association AAA_23 PF13476.1 gi|294496455|ref|YP_003542948.1| - 4.8e-22 79.2 6.0 4.8e-22 79.2 4.2 6.5 1 1 4 5 5 5 1 AAA domain SMC_N PF02463.14 gi|294496455|ref|YP_003542948.1| - 4.4e-15 55.5 26.0 1.1e-09 37.8 0.0 3.2 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|294496455|ref|YP_003542948.1| - 1.1e-08 35.3 26.0 3.2e-05 24.0 6.1 4.1 3 1 1 4 4 4 2 AAA domain AAA_29 PF13555.1 gi|294496455|ref|YP_003542948.1| - 1.1e-05 24.8 0.0 2.3e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|294496455|ref|YP_003542948.1| - 0.00011 20.8 98.3 0.28 9.6 11.0 4.2 2 1 2 4 4 4 4 AAA domain TMF_TATA_bd PF12325.3 gi|294496455|ref|YP_003542948.1| - 0.0029 17.3 12.9 0.0029 17.3 9.0 6.7 3 1 3 6 6 6 1 TATA element modulatory factor 1 TATA binding Baculo_PEP_C PF04513.7 gi|294496456|ref|YP_003542949.1| - 0.0072 16.1 2.3 0.01 15.6 1.6 1.2 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3534 PF12053.3 gi|294496456|ref|YP_003542949.1| - 0.01 15.6 0.7 0.023 14.5 0.1 1.8 2 1 0 2 2 2 0 Domain of unknown function (DUF3534) ImcF-related_N PF14331.1 gi|294496456|ref|YP_003542949.1| - 0.032 13.1 2.8 0.058 12.2 1.9 1.6 1 1 0 1 1 1 0 ImcF-related N-terminal domain NPV_P10 PF05531.7 gi|294496456|ref|YP_003542949.1| - 0.25 11.6 4.4 0.67 10.2 3.1 1.8 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein KCNQ_channel PF03520.9 gi|294496456|ref|YP_003542949.1| - 0.38 10.0 9.8 0.02 14.1 1.4 2.1 2 0 0 2 2 2 0 KCNQ voltage-gated potassium channel COG2 PF06148.6 gi|294496456|ref|YP_003542949.1| - 1.3 8.9 9.4 0.057 13.2 2.7 1.6 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 FlaC_arch PF05377.6 gi|294496456|ref|YP_003542949.1| - 2.9 7.8 10.7 2.4 8.1 2.2 3.1 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) COMP PF11598.3 gi|294496456|ref|YP_003542949.1| - 4.1 7.5 7.3 0.91 9.6 2.2 2.1 1 1 1 2 2 2 0 Cartilage oligomeric matrix protein TMF_TATA_bd PF12325.3 gi|294496456|ref|YP_003542949.1| - 5.1 6.8 19.4 0.21 11.3 8.4 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding SMC_N PF02463.14 gi|294496457|ref|YP_003542950.1| - 5.9e-67 225.1 27.4 3.7e-66 222.5 19.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|294496457|ref|YP_003542950.1| - 1e-33 115.8 0.3 5.9e-33 113.3 0.0 2.6 3 0 0 3 3 2 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.1 gi|294496457|ref|YP_003542950.1| - 1.7e-13 51.3 27.5 1.7e-13 51.3 19.1 7.1 3 2 1 4 4 2 1 AAA domain AAA_13 PF13166.1 gi|294496457|ref|YP_003542950.1| - 6.6e-08 31.4 110.5 1.2e-05 24.0 14.4 6.4 3 2 3 6 6 6 5 AAA domain AAA_29 PF13555.1 gi|294496457|ref|YP_003542950.1| - 4.3e-07 29.3 0.0 9.2e-07 28.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain IncA PF04156.9 gi|294496457|ref|YP_003542950.1| - 8.1e-07 28.8 142.7 0.0015 18.1 16.9 8.1 2 2 4 7 7 6 5 IncA protein AAA_21 PF13304.1 gi|294496457|ref|YP_003542950.1| - 3.2e-06 27.3 28.8 0.0021 18.0 0.0 4.5 3 1 0 3 3 3 2 AAA domain Reo_sigmaC PF04582.7 gi|294496457|ref|YP_003542950.1| - 3.7e-06 26.3 27.5 0.0014 17.8 0.4 5.7 2 2 1 5 5 5 2 Reovirus sigma C capsid protein Laminin_I PF06008.9 gi|294496457|ref|YP_003542950.1| - 0.00086 18.7 12.0 0.00086 18.7 8.3 5.2 2 2 1 4 4 4 1 Laminin Domain I PspA_IM30 PF04012.7 gi|294496457|ref|YP_003542950.1| - 0.00093 18.6 13.2 0.00093 18.6 9.2 8.4 3 2 3 8 8 7 1 PspA/IM30 family IFT57 PF10498.4 gi|294496457|ref|YP_003542950.1| - 0.0022 16.8 21.2 0.0022 16.8 14.7 5.3 2 2 3 5 5 5 2 Intra-flagellar transport protein 57 ERM PF00769.14 gi|294496457|ref|YP_003542950.1| - 0.0025 17.3 26.4 0.0025 17.3 18.3 6.6 2 2 4 7 7 6 2 Ezrin/radixin/moesin family FlxA PF14282.1 gi|294496457|ref|YP_003542950.1| - 0.0099 15.8 3.0 0.0099 15.8 2.1 8.2 4 1 3 7 7 5 1 FlxA-like protein ATG16 PF08614.6 gi|294496457|ref|YP_003542950.1| - 0.011 15.5 120.8 0.02 14.7 12.5 7.7 2 2 3 7 7 7 0 Autophagy protein 16 (ATG16) AAA_15 PF13175.1 gi|294496457|ref|YP_003542950.1| - 0.014 14.4 0.0 0.014 14.4 0.0 4.7 2 2 0 3 3 1 0 AAA ATPase domain DUF869 PF05911.6 gi|294496457|ref|YP_003542950.1| - 0.014 13.6 109.4 0.0029 15.9 16.3 4.2 2 2 3 5 5 5 0 Plant protein of unknown function (DUF869) DUF4200 PF13863.1 gi|294496457|ref|YP_003542950.1| - 0.62 10.0 142.3 0.027 14.4 10.7 9.5 4 2 5 9 9 9 0 Domain of unknown function (DUF4200) DUF3584 PF12128.3 gi|294496457|ref|YP_003542950.1| - 0.66 7.2 112.5 0.029 11.7 27.0 3.8 2 2 1 3 3 3 0 Protein of unknown function (DUF3584) ScpA_ScpB PF02616.9 gi|294496458|ref|YP_003542951.1| - 2e-37 129.0 7.3 5e-37 127.7 5.1 1.6 1 1 0 1 1 1 1 ScpA/B protein NLE PF08154.7 gi|294496458|ref|YP_003542951.1| - 0.053 13.5 0.1 15 5.7 0.0 2.6 2 0 0 2 2 2 0 NLE (NUC135) domain E2_bind PF08825.5 gi|294496458|ref|YP_003542951.1| - 0.073 12.8 0.5 5.4 6.8 0.0 2.7 2 0 0 2 2 2 0 E2 binding domain RWD PF05773.17 gi|294496458|ref|YP_003542951.1| - 0.26 11.2 2.3 1.5 8.7 1.6 2.1 1 1 0 1 1 1 0 RWD domain FAM176 PF14851.1 gi|294496458|ref|YP_003542951.1| - 1.1 8.9 8.7 3.3 7.3 2.4 2.2 1 1 1 2 2 2 0 FAM176 family DUF387 PF04079.11 gi|294496459|ref|YP_003542952.1| - 6.4e-42 142.6 2.3 3.6e-40 136.9 0.1 2.9 2 1 1 3 3 3 1 Putative transcriptional regulators (Ypuh-like) Nuf2 PF03800.9 gi|294496459|ref|YP_003542952.1| - 0.00035 20.5 0.1 0.0011 18.9 0.0 1.8 2 0 0 2 2 2 1 Nuf2 family TrmB PF01978.14 gi|294496459|ref|YP_003542952.1| - 0.0016 18.1 0.1 0.3 10.8 0.0 3.2 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|294496459|ref|YP_003542952.1| - 0.0056 16.4 0.0 0.02 14.6 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Ribosomal_S7e PF01251.13 gi|294496459|ref|YP_003542952.1| - 0.032 13.7 1.4 0.049 13.0 0.2 1.8 2 0 0 2 2 2 0 Ribosomal protein S7e HTH_15 PF12324.3 gi|294496459|ref|YP_003542952.1| - 0.044 13.4 0.1 5.2 6.7 0.1 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain of alkylmercury lyase TBP PF00352.16 gi|294496460|ref|YP_003542953.1| - 6.1e-66 217.8 0.2 3.2e-32 109.7 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|294496460|ref|YP_003542953.1| - 3.7e-06 26.9 0.0 0.1 12.6 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF3252 PF11623.3 gi|294496460|ref|YP_003542953.1| - 0.0095 15.3 0.0 2.8 7.4 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF3252) Glycos_transf_2 PF00535.21 gi|294496461|ref|YP_003542954.1| - 1e-19 70.8 0.1 2.2e-19 69.7 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|294496461|ref|YP_003542954.1| - 1.9e-08 34.3 0.0 2.7e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|294496461|ref|YP_003542954.1| - 0.04 14.2 0.0 0.068 13.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Tetraspannin PF00335.15 gi|294496461|ref|YP_003542954.1| - 0.35 10.1 8.6 0.5 9.6 6.0 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF204 PF02659.10 gi|294496461|ref|YP_003542954.1| - 2.1 8.5 10.0 4.1 7.5 5.5 2.3 1 1 1 2 2 2 0 Domain of unknown function DUF ThiC PF01964.13 gi|294496462|ref|YP_003542955.1| - 2.9e-174 579.5 0.8 3.3e-174 579.3 0.6 1.0 1 0 0 1 1 1 1 ThiC family Pro_isomerase PF00160.16 gi|294496463|ref|YP_003542956.1| - 2.5e-47 160.9 0.1 2.7e-47 160.8 0.1 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD dTMP_synthase PF02593.9 gi|294496465|ref|YP_003542958.1| - 2.8e-74 249.1 0.0 3.2e-74 248.9 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase CGGC PF08821.6 gi|294496466|ref|YP_003542959.1| - 9.5e-37 125.3 2.4 1.1e-36 125.1 1.7 1.0 1 0 0 1 1 1 1 CGGC domain zf-C2H2 PF00096.21 gi|294496466|ref|YP_003542959.1| - 0.072 13.4 4.9 0.37 11.2 0.4 2.7 2 1 0 2 2 2 0 Zinc finger, C2H2 type Fer4_21 PF14697.1 gi|294496467|ref|YP_003542960.1| - 3.9e-09 36.2 8.3 3.9e-09 36.2 5.8 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|294496467|ref|YP_003542960.1| - 9.2e-09 34.5 17.8 1e-05 24.8 3.1 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294496467|ref|YP_003542960.1| - 9.4e-08 32.3 13.7 0.00035 20.8 0.6 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294496467|ref|YP_003542960.1| - 2.1e-07 30.4 3.2 2.1e-07 30.4 2.3 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|294496467|ref|YP_003542960.1| - 1.4e-06 28.4 8.7 1.4e-06 28.4 6.0 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294496467|ref|YP_003542960.1| - 3.1e-06 26.8 7.8 3.1e-06 26.8 5.4 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294496467|ref|YP_003542960.1| - 5.5e-06 27.0 14.4 0.005 17.5 3.2 2.6 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|294496467|ref|YP_003542960.1| - 6.9e-05 23.3 11.6 0.00078 19.9 5.2 2.5 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|294496467|ref|YP_003542960.1| - 0.0006 19.5 3.8 0.0006 19.5 2.6 3.8 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|294496467|ref|YP_003542960.1| - 0.017 15.1 15.7 0.24 11.4 5.2 2.9 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|294496467|ref|YP_003542960.1| - 0.018 15.3 11.2 0.27 11.6 0.5 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294496467|ref|YP_003542960.1| - 0.035 14.4 3.8 0.035 14.4 2.6 3.9 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|294496467|ref|YP_003542960.1| - 0.36 10.7 8.7 0.1 12.5 3.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain GXGXG PF01493.14 gi|294496468|ref|YP_003542961.1| - 6.2e-21 74.3 21.8 1.3e-16 60.2 10.7 2.9 1 1 1 2 2 2 2 GXGXG motif tRNA_anti-codon PF01336.20 gi|294496468|ref|YP_003542961.1| - 0.041 13.7 0.2 8.7 6.2 0.0 2.7 3 0 0 3 3 3 0 OB-fold nucleic acid binding domain NAGLU_N PF12971.2 gi|294496468|ref|YP_003542961.1| - 0.49 10.0 2.6 9.1 6.0 0.1 3.1 2 2 1 3 3 3 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain FeoC PF09012.5 gi|294496469|ref|YP_003542962.1| - 4.2e-13 48.7 0.6 5.6e-13 48.3 0.4 1.2 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_45 PF14947.1 gi|294496469|ref|YP_003542962.1| - 0.11 12.3 0.6 9.5 6.1 0.1 2.4 2 1 0 2 2 2 0 Winged helix-turn-helix HTH_34 PF13601.1 gi|294496469|ref|YP_003542962.1| - 0.12 12.4 0.1 8.1 6.5 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF1700 PF08006.6 gi|294496470|ref|YP_003542963.1| - 0.75 9.0 8.7 1.1 8.4 6.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) Pox_A14 PF05767.7 gi|294496470|ref|YP_003542963.1| - 0.89 9.5 4.8 0.48 10.4 1.5 1.9 3 0 0 3 3 3 0 Poxvirus virion envelope protein A14 DUF2427 PF10348.4 gi|294496470|ref|YP_003542963.1| - 1.6 8.3 5.4 0.82 9.2 2.3 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF2427) DUF2670 PF10875.3 gi|294496470|ref|YP_003542963.1| - 4.2 7.3 5.1 0.66 10.0 0.8 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2670) DUF308 PF03729.8 gi|294496470|ref|YP_003542963.1| - 4.7 7.2 19.2 2.9 7.9 0.7 3.2 1 1 3 4 4 4 0 Short repeat of unknown function (DUF308) Yip1 PF04893.12 gi|294496470|ref|YP_003542963.1| - 8.1 5.9 18.6 11 5.4 12.9 1.1 1 0 0 1 1 1 0 Yip1 domain FeoB_N PF02421.13 gi|294496471|ref|YP_003542964.1| - 1.2e-65 219.6 0.7 1.7e-65 219.0 0.5 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|294496471|ref|YP_003542964.1| - 5.8e-49 164.5 17.4 5.8e-32 109.8 2.9 2.6 2 0 0 2 2 2 2 Nucleoside recognition FeoB_C PF07664.7 gi|294496471|ref|YP_003542964.1| - 3.4e-19 68.0 0.6 3.4e-19 68.0 0.4 3.2 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.18 gi|294496471|ref|YP_003542964.1| - 9.7e-16 57.7 0.2 1.8e-15 56.9 0.1 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|294496471|ref|YP_003542964.1| - 1.4e-05 24.4 0.0 2.1e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|294496471|ref|YP_003542964.1| - 0.0052 17.2 0.0 0.0091 16.4 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein GTP_EFTU PF00009.22 gi|294496471|ref|YP_003542964.1| - 0.0092 15.4 0.5 0.98 8.8 0.4 3.0 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|294496471|ref|YP_003542964.1| - 0.064 12.3 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 AIG1 family Dynamin_N PF00350.18 gi|294496471|ref|YP_003542964.1| - 0.071 12.9 0.2 12 5.6 0.0 2.3 1 1 1 2 2 2 0 Dynamin family FeoA PF04023.9 gi|294496472|ref|YP_003542965.1| - 7.6e-15 54.6 0.0 8.7e-15 54.4 0.0 1.0 1 0 0 1 1 1 1 FeoA domain FeoA PF04023.9 gi|294496473|ref|YP_003542966.1| - 1.4e-15 56.9 0.1 1.6e-15 56.8 0.1 1.0 1 0 0 1 1 1 1 FeoA domain HIT PF01230.18 gi|294496474|ref|YP_003542967.1| - 1.4e-28 99.2 0.2 1.9e-28 98.8 0.1 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|294496474|ref|YP_003542967.1| - 6e-19 68.3 0.0 7.7e-19 68.0 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|294496474|ref|YP_003542967.1| - 0.00018 21.1 0.0 0.00027 20.6 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Peroxin-3 PF04882.7 gi|294496474|ref|YP_003542967.1| - 0.11 11.1 0.0 0.12 11.0 0.0 1.0 1 0 0 1 1 1 0 Peroxin-3 Trypsin_2 PF13365.1 gi|294496475|ref|YP_003542968.1| - 6.1e-21 74.6 0.1 9.5e-21 74.0 0.1 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|294496475|ref|YP_003542968.1| - 3.7e-18 65.2 0.1 8.7e-18 64.0 0.1 1.7 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.21 gi|294496475|ref|YP_003542968.1| - 2.7e-13 50.0 0.1 7.2e-13 48.6 0.0 1.6 1 1 0 1 1 1 1 Trypsin PDZ PF00595.19 gi|294496475|ref|YP_003542968.1| - 0.034 14.3 5.1 0.043 13.9 1.6 2.7 2 1 0 2 2 2 0 PDZ domain (Also known as DHR or GLGF) Peptidase_S46 PF10459.4 gi|294496475|ref|YP_003542968.1| - 0.2 10.0 1.3 0.76 8.1 0.5 1.8 2 0 0 2 2 2 0 Peptidase S46 FMN_red PF03358.10 gi|294496476|ref|YP_003542969.1| - 6e-27 94.0 0.0 7.6e-27 93.6 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|294496476|ref|YP_003542969.1| - 2.6e-09 36.8 0.0 3.3e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2284 PF10050.4 gi|294496476|ref|YP_003542969.1| - 0.015 14.8 0.1 0.023 14.3 0.1 1.2 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) HTH_5 PF01022.15 gi|294496477|ref|YP_003542970.1| - 1.4e-16 59.8 0.6 2.3e-16 59.1 0.4 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|294496477|ref|YP_003542970.1| - 1.8e-12 46.8 0.6 2.7e-12 46.2 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|294496477|ref|YP_003542970.1| - 1.9e-05 24.5 0.1 3.5e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|294496477|ref|YP_003542970.1| - 0.0019 17.8 0.3 0.0035 16.9 0.2 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|294496477|ref|YP_003542970.1| - 0.0022 17.6 0.0 0.0036 16.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Arg_repressor PF01316.16 gi|294496477|ref|YP_003542970.1| - 0.0081 15.6 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 Arginine repressor, DNA binding domain ORC5_C PF14630.1 gi|294496477|ref|YP_003542970.1| - 0.028 13.8 0.1 0.032 13.6 0.1 1.1 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 5 C-terminus HTH_27 PF13463.1 gi|294496477|ref|YP_003542970.1| - 0.093 13.0 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF318 PF03773.8 gi|294496478|ref|YP_003542971.1| - 9.8e-55 185.6 10.6 9.8e-55 185.6 7.3 1.4 2 0 0 2 2 2 1 Predicted permease BRI3BP PF14965.1 gi|294496478|ref|YP_003542971.1| - 0.071 12.4 0.9 0.13 11.6 0.6 1.3 1 0 0 1 1 1 0 Negative regulator of p53/TP53 P12 PF12669.2 gi|294496478|ref|YP_003542971.1| - 1.7 8.8 0.0 1.7 8.8 0.0 4.3 4 0 0 4 4 4 0 Virus attachment protein p12 family DUF418 PF04235.7 gi|294496478|ref|YP_003542971.1| - 5.9 6.5 14.0 1.3 8.6 6.6 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF418) Ribonuc_red_lgC PF02867.10 gi|294496479|ref|YP_003542972.1| - 1.3e-158 528.9 0.0 1.3e-114 383.6 0.0 2.3 1 1 1 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|294496479|ref|YP_003542972.1| - 2.3e-24 84.9 0.0 4.8e-24 83.9 0.0 1.6 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Bactofilin PF04519.8 gi|294496480|ref|YP_003542973.1| - 0.017 15.1 26.3 0.54 10.2 0.2 6.7 3 1 4 7 7 7 0 Polymer-forming cytoskeletal DNA_pol_A PF00476.15 gi|294496480|ref|YP_003542973.1| - 0.023 13.3 5.9 0.98 7.9 0.4 2.2 2 0 0 2 2 2 0 DNA polymerase family A DUF61 PF01886.11 gi|294496481|ref|YP_003542974.1| - 1.7e-22 79.6 0.1 2e-22 79.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 TGS PF02824.16 gi|294496482|ref|YP_003542975.1| - 3.7e-20 71.5 0.0 8e-20 70.4 0.0 1.6 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|294496482|ref|YP_003542975.1| - 1e-18 67.3 0.0 2.2e-18 66.2 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|294496482|ref|YP_003542975.1| - 7e-13 48.1 0.0 1.7e-12 46.9 0.0 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|294496482|ref|YP_003542975.1| - 0.00098 19.6 0.0 0.0022 18.4 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|294496482|ref|YP_003542975.1| - 0.0012 18.6 0.3 0.19 11.5 0.0 2.6 3 0 0 3 3 3 1 Dynamin family ArgK PF03308.11 gi|294496482|ref|YP_003542975.1| - 0.0037 16.0 0.7 0.026 13.2 0.2 2.3 2 0 0 2 2 2 1 ArgK protein cobW PF02492.14 gi|294496482|ref|YP_003542975.1| - 0.0081 15.6 3.0 1.7 8.0 0.1 2.6 3 0 0 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain DUF258 PF03193.11 gi|294496482|ref|YP_003542975.1| - 0.013 14.7 0.4 0.06 12.5 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function, DUF258 SRPRB PF09439.5 gi|294496482|ref|YP_003542975.1| - 0.016 14.4 0.0 0.028 13.6 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AIG1 PF04548.11 gi|294496482|ref|YP_003542975.1| - 0.02 13.9 0.0 0.042 12.9 0.0 1.5 1 0 0 1 1 1 0 AIG1 family ATP_bind_1 PF03029.12 gi|294496482|ref|YP_003542975.1| - 0.025 14.1 0.3 1.7 8.1 0.0 2.6 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein DUF1192 PF06698.6 gi|294496482|ref|YP_003542975.1| - 0.098 12.4 0.2 0.26 11.1 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) ABC_tran PF00005.22 gi|294496483|ref|YP_003542976.1| - 1.9e-30 105.9 0.0 3.3e-30 105.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|294496483|ref|YP_003542976.1| - 2.4e-14 54.0 0.2 3.7e-12 46.8 0.2 2.2 1 1 0 1 1 1 1 AAA domain TOBE_2 PF08402.5 gi|294496483|ref|YP_003542976.1| - 1.6e-10 40.8 0.1 4.5e-10 39.3 0.1 1.8 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|294496483|ref|YP_003542976.1| - 4.4e-05 22.8 0.1 0.0033 16.6 0.0 2.3 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain TOBE PF03459.12 gi|294496483|ref|YP_003542976.1| - 0.00032 20.7 0.0 0.0015 18.5 0.0 2.1 2 0 0 2 2 2 1 TOBE domain AAA_23 PF13476.1 gi|294496483|ref|YP_003542976.1| - 0.00037 20.8 0.1 0.00085 19.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|294496483|ref|YP_003542976.1| - 0.0027 17.8 0.6 0.017 15.2 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|294496483|ref|YP_003542976.1| - 0.013 15.2 0.1 0.045 13.5 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain AAA PF00004.24 gi|294496483|ref|YP_003542976.1| - 0.016 15.3 0.0 0.096 12.8 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|294496483|ref|YP_003542976.1| - 0.019 14.9 0.1 0.031 14.2 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|294496483|ref|YP_003542976.1| - 0.021 14.3 0.0 0.045 13.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|294496483|ref|YP_003542976.1| - 0.023 13.7 0.0 1.4 7.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.1 gi|294496483|ref|YP_003542976.1| - 0.025 14.4 0.2 0.18 11.7 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Arch_ATPase PF01637.13 gi|294496483|ref|YP_003542976.1| - 0.079 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase PEPCK_ATP PF01293.15 gi|294496483|ref|YP_003542976.1| - 0.092 11.2 0.1 0.19 10.2 0.0 1.4 2 0 0 2 2 2 0 Phosphoenolpyruvate carboxykinase AAA_30 PF13604.1 gi|294496483|ref|YP_003542976.1| - 0.13 11.8 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|294496483|ref|YP_003542976.1| - 0.13 11.6 0.0 0.8 9.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|294496483|ref|YP_003542976.1| - 0.27 9.6 0.0 0.42 9.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|294496484|ref|YP_003542977.1| - 6.3e-22 77.9 16.6 9e-22 77.4 11.5 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component YesK PF14150.1 gi|294496484|ref|YP_003542977.1| - 0.26 11.3 6.8 0.47 10.5 0.1 2.8 2 1 0 2 2 2 0 YesK-like protein SBP_bac_11 PF13531.1 gi|294496485|ref|YP_003542978.1| - 4.7e-55 186.7 0.0 5.4e-55 186.5 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|294496485|ref|YP_003542978.1| - 2.3e-17 63.7 0.1 3.1e-08 33.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|294496485|ref|YP_003542978.1| - 2.1e-05 24.0 0.0 2.8e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PBP_like PF12727.2 gi|294496485|ref|YP_003542978.1| - 0.0013 17.7 0.0 0.0016 17.4 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_8 PF13416.1 gi|294496485|ref|YP_003542978.1| - 0.0042 16.8 0.0 0.44 10.2 0.0 2.2 1 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|294496485|ref|YP_003542978.1| - 0.0085 15.4 0.0 0.014 14.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.2 gi|294496485|ref|YP_003542978.1| - 0.016 14.6 0.2 0.083 12.3 0.1 1.9 2 0 0 2 2 2 0 PBP superfamily domain LysR_substrate PF03466.15 gi|294496485|ref|YP_003542978.1| - 0.018 14.1 0.0 0.2 10.7 0.0 2.2 2 1 0 2 2 2 0 LysR substrate binding domain MoeA_N PF03453.12 gi|294496486|ref|YP_003542979.1| - 7e-47 158.7 0.0 1.8e-46 157.4 0.0 1.7 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|294496486|ref|YP_003542979.1| - 4.6e-29 100.6 0.0 8.5e-29 99.8 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|294496486|ref|YP_003542979.1| - 1.1e-11 44.4 0.1 8.9e-11 41.5 0.0 2.5 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) Aminotran_4 PF01063.14 gi|294496487|ref|YP_003542980.1| - 4.1e-50 170.3 0.0 4.9e-50 170.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV 4HBT PF03061.17 gi|294496488|ref|YP_003542981.1| - 4.8e-11 42.6 0.2 6.1e-11 42.2 0.1 1.1 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|294496488|ref|YP_003542981.1| - 1.4e-07 31.5 0.0 2.1e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) Aminotran_5 PF00266.14 gi|294496488|ref|YP_003542981.1| - 0.035 12.8 0.0 0.041 12.6 0.0 1.1 1 0 0 1 1 1 0 Aminotransferase class-V PS-DH PF14765.1 gi|294496488|ref|YP_003542981.1| - 0.067 12.3 0.0 0.081 12.0 0.0 1.1 1 0 0 1 1 1 0 Polyketide synthase dehydratase HAD_2 PF13419.1 gi|294496489|ref|YP_003542982.1| - 5.1e-24 85.4 0.0 5.9e-24 85.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|294496489|ref|YP_003542982.1| - 2.9e-09 37.6 0.1 1.1e-07 32.5 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|294496489|ref|YP_003542982.1| - 1.4e-08 34.2 0.0 2.2e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like NT5C PF06941.7 gi|294496489|ref|YP_003542982.1| - 0.071 12.6 0.0 0.19 11.1 0.0 1.7 1 1 1 2 2 2 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Response_reg PF00072.19 gi|294496490|ref|YP_003542983.1| - 1.1e-19 70.5 0.0 1.2e-19 70.3 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain iPGM_N PF06415.8 gi|294496491|ref|YP_003542984.1| - 3e-88 294.8 0.1 4.5e-88 294.3 0.1 1.3 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.13 gi|294496491|ref|YP_003542984.1| - 8.4e-86 287.4 0.1 9.7e-86 287.2 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|294496491|ref|YP_003542984.1| - 4.2e-06 26.3 0.0 5.6e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|294496491|ref|YP_003542984.1| - 0.085 12.0 0.0 0.14 11.2 0.0 1.5 2 0 0 2 2 2 0 Sulfatase XPG_I PF00867.13 gi|294496492|ref|YP_003542985.1| - 1.1e-24 86.2 0.1 3.3e-24 84.7 0.0 1.8 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.12 gi|294496492|ref|YP_003542985.1| - 1.5e-20 73.3 0.0 3.2e-20 72.2 0.0 1.6 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|294496492|ref|YP_003542985.1| - 5.7e-07 29.7 0.0 1.6e-06 28.2 0.0 1.7 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.2 gi|294496492|ref|YP_003542985.1| - 0.0058 16.4 0.0 0.015 15.1 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif 5_3_exonuc_N PF02739.11 gi|294496492|ref|YP_003542985.1| - 0.0095 15.3 0.0 0.017 14.4 0.0 1.5 1 1 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain HHH_5 PF14520.1 gi|294496492|ref|YP_003542985.1| - 0.12 12.5 0.0 0.29 11.3 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain Oxidored_q2 PF00420.19 gi|294496494|ref|YP_003542987.1| - 1.3e-05 24.6 0.5 1.8e-05 24.2 0.4 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4175 PF13779.1 gi|294496494|ref|YP_003542987.1| - 0.0018 16.0 0.3 0.0021 15.8 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4175) PrgI PF12666.2 gi|294496494|ref|YP_003542987.1| - 0.0091 16.1 0.4 0.012 15.7 0.3 1.2 1 0 0 1 1 1 1 PrgI family protein O-antigen_lig PF13425.1 gi|294496494|ref|YP_003542987.1| - 0.012 15.6 0.1 0.013 15.4 0.1 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein UPF0104 PF03706.8 gi|294496494|ref|YP_003542987.1| - 0.022 14.0 0.1 0.024 13.9 0.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) DUF4013 PF13197.1 gi|294496494|ref|YP_003542987.1| - 0.037 13.3 1.9 0.05 12.9 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) Baculo_PEP_C PF04513.7 gi|294496494|ref|YP_003542987.1| - 0.046 13.5 0.7 0.06 13.1 0.5 1.1 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Sugarporin_N PF11471.3 gi|294496494|ref|YP_003542987.1| - 0.075 12.6 0.3 0.11 12.1 0.2 1.3 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension DUF1664 PF07889.7 gi|294496494|ref|YP_003542987.1| - 0.097 12.4 1.2 0.14 11.9 0.8 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Wzy_C PF04932.10 gi|294496494|ref|YP_003542987.1| - 0.12 12.0 0.2 0.14 11.9 0.1 1.1 1 0 0 1 1 1 0 O-Antigen ligase Polysacc_synt_C PF14667.1 gi|294496494|ref|YP_003542987.1| - 0.24 11.2 5.4 0.3 10.9 3.7 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain DUF1119 PF06550.6 gi|294496495|ref|YP_003542988.1| - 2.6e-97 325.3 23.2 3.1e-97 325.1 16.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1119) CMD PF02627.15 gi|294496496|ref|YP_003542989.1| - 1.1e-14 53.9 0.0 1.4e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF3755 PF12579.3 gi|294496496|ref|YP_003542989.1| - 0.039 13.3 0.5 7.2 6.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3755) MCR_C PF04609.7 gi|294496497|ref|YP_003542990.1| - 3.9e-106 353.7 0.1 4.5e-106 353.5 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF2113 PF09886.4 gi|294496498|ref|YP_003542991.1| - 1.5e-58 197.1 0.1 1.8e-58 196.8 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) BcrAD_BadFG PF01869.15 gi|294496499|ref|YP_003542992.1| - 1.3e-57 195.1 4.4 2.1e-57 194.4 3.1 1.3 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family CmcH_NodU PF02543.10 gi|294496499|ref|YP_003542992.1| - 0.00051 19.2 0.0 0.00079 18.6 0.0 1.3 1 0 0 1 1 1 1 Carbamoyltransferase MutL PF13941.1 gi|294496499|ref|YP_003542992.1| - 0.0019 16.5 1.7 0.52 8.5 0.1 2.5 2 0 0 2 2 2 2 MutL protein Hydant_A_N PF05378.8 gi|294496499|ref|YP_003542992.1| - 0.0019 17.7 2.1 0.0071 15.8 0.2 2.3 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region Peptidase_M22 PF00814.20 gi|294496499|ref|YP_003542992.1| - 0.011 15.2 0.1 3.3 7.1 0.0 2.6 3 0 0 3 3 3 0 Glycoprotease family FtsA PF14450.1 gi|294496499|ref|YP_003542992.1| - 0.022 14.5 2.6 0.9 9.3 1.8 2.7 1 1 0 1 1 1 0 Cell division protein FtsA FGGY_N PF00370.16 gi|294496499|ref|YP_003542992.1| - 0.077 12.2 0.3 3 7.0 0.2 2.3 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain DUF2112 PF09885.4 gi|294496500|ref|YP_003542993.1| - 6.3e-65 217.1 0.0 7.2e-65 216.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.4 gi|294496501|ref|YP_003542994.1| - 1.5e-44 149.7 0.0 1.9e-44 149.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) ABC_tran PF00005.22 gi|294496503|ref|YP_003542996.1| - 3.6e-49 166.5 0.0 4.3e-24 85.3 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|294496503|ref|YP_003542996.1| - 3.1e-08 33.9 2.3 0.083 12.8 0.0 3.5 4 0 0 4 4 3 3 AAA domain AAA_15 PF13175.1 gi|294496503|ref|YP_003542996.1| - 4.4e-08 32.6 0.6 0.028 13.4 0.0 3.4 3 0 0 3 3 3 3 AAA ATPase domain SMC_N PF02463.14 gi|294496503|ref|YP_003542996.1| - 1.6e-07 30.8 0.2 0.0014 17.8 0.1 3.1 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|294496503|ref|YP_003542996.1| - 4.7e-06 27.4 0.2 0.017 15.9 0.0 2.9 3 1 0 3 3 2 2 AAA domain DUF258 PF03193.11 gi|294496503|ref|YP_003542996.1| - 1.7e-05 24.0 1.0 0.069 12.3 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|294496503|ref|YP_003542996.1| - 6.9e-05 23.1 0.3 0.43 10.8 0.1 2.8 2 1 0 2 2 2 2 AAA domain UPF0079 PF02367.12 gi|294496503|ref|YP_003542996.1| - 0.0001 21.8 1.2 0.37 10.4 0.0 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 AAA_29 PF13555.1 gi|294496503|ref|YP_003542996.1| - 0.00015 21.2 2.5 0.11 11.9 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|294496503|ref|YP_003542996.1| - 0.00015 21.7 0.0 0.14 12.1 0.0 2.6 3 0 0 3 3 2 1 AAA ATPase domain SbcCD_C PF13558.1 gi|294496503|ref|YP_003542996.1| - 0.00033 20.4 0.0 2.1 8.3 0.0 3.2 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|294496503|ref|YP_003542996.1| - 0.00065 19.8 0.8 0.72 9.9 0.0 3.1 2 1 0 2 2 2 1 AAA domain PRK PF00485.13 gi|294496503|ref|YP_003542996.1| - 0.00077 19.0 0.1 0.77 9.2 0.0 2.4 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.1 gi|294496503|ref|YP_003542996.1| - 0.00084 19.2 0.5 0.34 10.7 0.0 2.6 2 1 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|294496503|ref|YP_003542996.1| - 0.0014 18.1 0.0 0.65 9.4 0.0 2.3 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_28 PF13521.1 gi|294496503|ref|YP_003542996.1| - 0.0019 18.1 1.1 6.1 6.7 0.0 4.0 4 0 0 4 4 4 0 AAA domain MobB PF03205.9 gi|294496503|ref|YP_003542996.1| - 0.0026 17.4 0.1 2.3 7.9 0.0 2.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|294496503|ref|YP_003542996.1| - 0.0026 16.8 1.1 0.028 13.5 0.1 2.3 2 0 0 2 2 2 1 Zeta toxin AAA_25 PF13481.1 gi|294496503|ref|YP_003542996.1| - 0.0037 16.6 0.1 1.6 8.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|294496503|ref|YP_003542996.1| - 0.0066 15.3 2.5 0.11 11.3 0.1 2.3 2 0 0 2 2 2 1 NB-ARC domain AAA_30 PF13604.1 gi|294496503|ref|YP_003542996.1| - 0.02 14.4 0.6 1.7 8.2 0.0 2.5 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|294496503|ref|YP_003542996.1| - 0.025 14.0 0.3 1.2 8.6 0.0 2.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation FtsK_SpoIIIE PF01580.13 gi|294496503|ref|YP_003542996.1| - 0.03 13.7 1.4 1.3 8.4 0.0 2.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|294496503|ref|YP_003542996.1| - 0.035 13.5 6.3 1.3 8.3 0.0 3.4 3 1 0 3 3 3 0 AAA-like domain Miro PF08477.8 gi|294496503|ref|YP_003542996.1| - 0.036 14.5 0.2 2 8.9 0.0 2.6 2 0 0 2 2 2 0 Miro-like protein KaiC PF06745.8 gi|294496503|ref|YP_003542996.1| - 0.044 12.9 3.0 1.3 8.0 0.0 2.8 2 1 0 2 2 2 0 KaiC T2SE PF00437.15 gi|294496503|ref|YP_003542996.1| - 0.044 12.6 2.0 3.4 6.4 0.1 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_23 PF13476.1 gi|294496503|ref|YP_003542996.1| - 0.046 14.0 5.2 0.16 12.2 0.3 2.3 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|294496503|ref|YP_003542996.1| - 0.049 13.4 2.9 1.7 8.3 0.1 3.3 3 0 0 3 3 3 0 Domain of unknown function DUF87 AAA_19 PF13245.1 gi|294496503|ref|YP_003542996.1| - 0.05 13.3 0.7 4.8 7.0 0.0 2.9 2 0 0 2 2 2 0 Part of AAA domain RNA_helicase PF00910.17 gi|294496503|ref|YP_003542996.1| - 0.076 13.1 0.1 14 5.9 0.0 2.5 2 0 0 2 2 2 0 RNA helicase NACHT PF05729.7 gi|294496503|ref|YP_003542996.1| - 0.093 12.3 1.7 0.53 9.9 0.1 2.4 2 0 0 2 2 2 0 NACHT domain TrwB_AAD_bind PF10412.4 gi|294496503|ref|YP_003542996.1| - 0.1 11.2 1.4 1.3 7.5 0.1 2.3 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain MMR_HSR1 PF01926.18 gi|294496503|ref|YP_003542996.1| - 0.16 11.9 1.4 3.8 7.5 0.0 3.1 2 1 0 2 2 2 0 50S ribosome-binding GTPase IstB_IS21 PF01695.12 gi|294496503|ref|YP_003542996.1| - 0.16 11.3 3.3 9.2 5.6 0.1 3.2 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA PF00004.24 gi|294496503|ref|YP_003542996.1| - 0.38 10.9 4.6 44 4.2 1.6 3.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|294496503|ref|YP_003542996.1| - 0.49 9.9 2.3 5.7 6.4 0.1 2.5 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|294496503|ref|YP_003542996.1| - 0.49 9.5 2.9 1.3 8.2 0.0 2.6 2 1 0 2 2 2 0 PhoH-like protein Hydrolase PF00702.21 gi|294496504|ref|YP_003542997.1| - 2.8e-16 60.5 0.0 1e-15 58.7 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|294496504|ref|YP_003542997.1| - 6.3e-11 42.8 0.0 8.7e-11 42.3 0.0 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|294496504|ref|YP_003542997.1| - 2.9e-06 27.0 0.0 0.046 13.2 0.0 3.0 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|294496504|ref|YP_003542997.1| - 3.9e-05 23.9 0.0 0.00023 21.4 0.0 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|294496504|ref|YP_003542997.1| - 0.017 14.8 0.1 0.032 13.9 0.1 1.4 1 0 0 1 1 1 0 HAD-hyrolase-like KR PF08659.5 gi|294496504|ref|YP_003542997.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 KR domain Acid_phosphat_B PF03767.9 gi|294496504|ref|YP_003542997.1| - 0.17 11.2 0.2 0.43 9.9 0.1 1.6 1 1 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) SNase PF00565.12 gi|294496505|ref|YP_003542998.1| - 3.1e-22 78.8 0.0 4.6e-22 78.3 0.0 1.3 1 0 0 1 1 1 1 Staphylococcal nuclease homologue tRNA_anti-like PF12869.2 gi|294496505|ref|YP_003542998.1| - 0.00016 21.1 0.8 1.3 8.5 0.1 3.5 3 1 0 3 3 3 3 tRNA_anti-like Peptidase_M10 PF00413.19 gi|294496506|ref|YP_003542999.1| - 1.1e-14 54.4 0.0 1.6e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.4 gi|294496506|ref|YP_003542999.1| - 0.00022 20.2 0.1 0.00026 19.9 0.1 1.1 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_2 PF13574.1 gi|294496506|ref|YP_003542999.1| - 0.0015 18.6 0.0 0.0017 18.4 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M57 PF12388.3 gi|294496506|ref|YP_003542999.1| - 0.0031 16.8 0.0 0.0046 16.3 0.0 1.2 1 0 0 1 1 1 1 Dual-action HEIGH metallo-peptidase Metallopep PF12044.3 gi|294496506|ref|YP_003542999.1| - 0.0038 15.7 0.0 0.0059 15.1 0.0 1.2 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_3 PF13582.1 gi|294496506|ref|YP_003542999.1| - 0.0097 16.4 0.0 0.013 16.0 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|294496506|ref|YP_003542999.1| - 0.0097 15.4 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Astacin PF01400.19 gi|294496506|ref|YP_003542999.1| - 0.012 14.9 0.1 0.025 13.9 0.0 1.5 2 0 0 2 2 2 0 Astacin (Peptidase family M12A) Peptidase_M54 PF07998.6 gi|294496506|ref|YP_003542999.1| - 0.037 13.8 0.0 0.06 13.1 0.0 1.4 1 0 0 1 1 1 0 Peptidase family M54 Reprolysin_5 PF13688.1 gi|294496506|ref|YP_003542999.1| - 0.058 13.3 0.0 0.081 12.8 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 DNA_binding_1 PF01035.15 gi|294496507|ref|YP_003543000.1| - 3.1e-30 103.7 0.0 4e-30 103.3 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain eIF-5a PF01287.15 gi|294496508|ref|YP_003543001.1| - 6.1e-14 51.7 0.6 1.3e-13 50.6 0.4 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|294496508|ref|YP_003543001.1| - 0.0018 18.0 0.0 0.0027 17.5 0.0 1.3 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain KH_5 PF13184.1 gi|294496508|ref|YP_003543001.1| - 0.034 13.9 0.1 0.066 13.0 0.0 1.5 1 0 0 1 1 1 0 NusA-like KH domain Arginase PF00491.16 gi|294496509|ref|YP_003543002.1| - 1.3e-77 260.8 0.0 1.5e-77 260.6 0.0 1.0 1 0 0 1 1 1 1 Arginase family DUF2761 PF10959.3 gi|294496509|ref|YP_003543002.1| - 0.13 11.8 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2761) PEX-1N PF09262.6 gi|294496510|ref|YP_003543003.1| - 0.036 14.1 0.2 0.14 12.2 0.0 2.0 1 1 1 2 2 2 0 Peroxisome biogenesis factor 1, N-terminal Elf1 PF05129.8 gi|294496510|ref|YP_003543003.1| - 0.038 13.6 0.3 0.076 12.7 0.2 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|294496510|ref|YP_003543003.1| - 0.095 13.0 0.5 0.2 11.9 0.4 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar PCMT PF01135.14 gi|294496511|ref|YP_003543004.1| - 1.8e-70 236.7 0.1 2.1e-70 236.4 0.1 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|294496511|ref|YP_003543004.1| - 1.1e-10 41.2 0.0 1.4e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|294496511|ref|YP_003543004.1| - 3.4e-06 27.0 0.0 4.9e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|294496511|ref|YP_003543004.1| - 6.5e-06 25.2 0.1 8.7e-06 24.8 0.1 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_18 PF12847.2 gi|294496511|ref|YP_003543004.1| - 2.6e-05 24.7 0.0 4.4e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|294496511|ref|YP_003543004.1| - 0.00012 21.1 0.0 0.00022 20.3 0.0 1.4 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.12 gi|294496511|ref|YP_003543004.1| - 0.00041 19.4 0.1 0.00064 18.8 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase GCD14 PF08704.5 gi|294496511|ref|YP_003543004.1| - 0.00043 19.8 0.0 0.00052 19.5 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_23 PF13489.1 gi|294496511|ref|YP_003543004.1| - 0.0027 17.4 0.0 0.0042 16.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|294496511|ref|YP_003543004.1| - 0.0037 16.3 0.0 0.0052 15.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.13 gi|294496511|ref|YP_003543004.1| - 0.0083 15.2 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|294496511|ref|YP_003543004.1| - 0.0085 15.4 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|294496511|ref|YP_003543004.1| - 0.086 13.6 0.0 0.13 13.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_28 PF02636.12 gi|294496511|ref|YP_003543004.1| - 0.12 11.7 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase PhoU PF01895.14 gi|294496512|ref|YP_003543005.1| - 1.9e-22 79.4 6.5 1.2e-14 54.4 0.8 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|294496512|ref|YP_003543005.1| - 6.9e-08 32.0 0.0 1.5e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PhoU_div PF01865.11 gi|294496512|ref|YP_003543005.1| - 0.0041 16.3 0.3 0.017 14.3 0.2 2.0 1 1 0 1 1 1 1 Protein of unknown function DUF47 GTP_EFTU PF00009.22 gi|294496513|ref|YP_003543006.1| - 2.1e-17 63.1 0.1 1.5e-07 31.0 0.0 2.6 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|294496513|ref|YP_003543006.1| - 1.8e-15 56.8 0.0 2.6e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase Arf PF00025.16 gi|294496513|ref|YP_003543006.1| - 4.3e-06 26.0 0.0 0.053 12.7 0.0 2.3 2 0 0 2 2 2 2 ADP-ribosylation factor family FeoB_N PF02421.13 gi|294496513|ref|YP_003543006.1| - 2.5e-05 23.5 0.1 0.00017 20.9 0.0 2.1 1 1 0 1 1 1 1 Ferrous iron transport protein B SRPRB PF09439.5 gi|294496513|ref|YP_003543006.1| - 9.5e-05 21.6 0.0 0.016 14.4 0.0 2.4 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit Septin PF00735.13 gi|294496513|ref|YP_003543006.1| - 0.00024 20.2 0.0 0.00034 19.7 0.0 1.2 1 0 0 1 1 1 1 Septin AAA_17 PF13207.1 gi|294496513|ref|YP_003543006.1| - 0.00081 20.1 0.0 0.0014 19.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|294496513|ref|YP_003543006.1| - 0.0031 16.7 0.0 0.0055 15.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Miro PF08477.8 gi|294496513|ref|YP_003543006.1| - 0.0036 17.7 0.0 0.038 14.4 0.0 2.1 1 1 0 1 1 1 1 Miro-like protein Arch_ATPase PF01637.13 gi|294496513|ref|YP_003543006.1| - 0.0043 16.7 0.0 0.0069 16.1 0.0 1.3 1 1 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|294496513|ref|YP_003543006.1| - 0.0065 16.4 0.0 0.013 15.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|294496513|ref|YP_003543006.1| - 0.0074 16.4 0.0 0.017 15.2 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|294496513|ref|YP_003543006.1| - 0.0083 15.8 0.0 0.019 14.6 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Dynamin_N PF00350.18 gi|294496513|ref|YP_003543006.1| - 0.0089 15.8 0.0 1.2 8.9 0.0 2.3 1 1 0 2 2 2 1 Dynamin family AAA_18 PF13238.1 gi|294496513|ref|YP_003543006.1| - 0.011 16.0 0.0 0.021 15.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|294496513|ref|YP_003543006.1| - 0.011 16.0 0.1 0.018 15.3 0.0 1.4 1 1 0 1 1 1 0 ABC transporter NTPase_1 PF03266.10 gi|294496513|ref|YP_003543006.1| - 0.011 15.4 0.0 0.029 14.0 0.0 1.7 2 0 0 2 2 1 0 NTPase AAA_22 PF13401.1 gi|294496513|ref|YP_003543006.1| - 0.014 15.4 0.0 0.038 14.1 0.0 1.8 1 1 1 2 2 2 0 AAA domain ArgK PF03308.11 gi|294496513|ref|YP_003543006.1| - 0.02 13.6 0.1 0.35 9.6 0.0 2.4 3 0 0 3 3 3 0 ArgK protein NB-ARC PF00931.17 gi|294496513|ref|YP_003543006.1| - 0.02 13.7 0.0 0.033 13.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_28 PF13521.1 gi|294496513|ref|YP_003543006.1| - 0.027 14.4 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|294496513|ref|YP_003543006.1| - 0.036 14.2 0.0 0.057 13.5 0.0 1.4 1 0 0 1 1 1 0 RNA helicase PPV_E1_C PF00519.12 gi|294496513|ref|YP_003543006.1| - 0.055 12.0 0.0 0.076 11.6 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase AIG1 PF04548.11 gi|294496513|ref|YP_003543006.1| - 0.069 12.2 0.0 0.1 11.6 0.0 1.5 1 1 0 1 1 1 0 AIG1 family cobW PF02492.14 gi|294496513|ref|YP_003543006.1| - 0.1 12.0 0.0 0.25 10.7 0.0 2.0 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|294496513|ref|YP_003543006.1| - 0.1 12.2 0.0 0.49 10.0 0.0 1.9 2 1 0 2 2 2 0 NACHT domain Parvo_NS1 PF01057.12 gi|294496513|ref|YP_003543006.1| - 0.11 11.3 0.0 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_24 PF13479.1 gi|294496513|ref|YP_003543006.1| - 0.11 12.0 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2073 PF09846.4 gi|294496514|ref|YP_003543007.1| - 7.8e-44 147.5 0.1 8.9e-44 147.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) SIS PF01380.17 gi|294496516|ref|YP_003543009.1| - 3.5e-18 65.4 0.2 6.4e-18 64.6 0.1 1.4 2 0 0 2 2 2 1 SIS domain SIS_2 PF13580.1 gi|294496516|ref|YP_003543009.1| - 2.3e-06 27.3 2.9 0.00039 20.1 0.3 2.3 1 1 1 2 2 2 2 SIS domain Y1_Tnp PF01797.11 gi|294496516|ref|YP_003543009.1| - 0.032 14.1 0.0 0.055 13.3 0.0 1.4 1 0 0 1 1 1 0 Transposase IS200 like Aminotran_1_2 PF00155.16 gi|294496517|ref|YP_003543010.1| - 4.7e-66 223.1 0.0 5.3e-66 223.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|294496517|ref|YP_003543010.1| - 2.8e-08 33.1 0.0 9.9e-08 31.4 0.0 1.8 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|294496517|ref|YP_003543010.1| - 9.1e-07 27.9 0.0 1.7e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|294496517|ref|YP_003543010.1| - 1.5e-06 26.7 0.0 2.2e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|294496517|ref|YP_003543010.1| - 0.00027 20.1 0.0 0.00055 19.1 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase NOG1 PF06858.9 gi|294496518|ref|YP_003543011.1| - 1.7e-21 75.8 0.1 3.1e-21 75.0 0.0 1.4 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|294496518|ref|YP_003543011.1| - 8.6e-18 64.3 0.0 1.6e-17 63.5 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|294496518|ref|YP_003543011.1| - 4.8e-13 48.6 0.0 7.5e-13 48.0 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|294496518|ref|YP_003543011.1| - 1.1e-06 29.0 0.0 2.2e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein DUF2277 PF10041.4 gi|294496518|ref|YP_003543011.1| - 0.013 15.4 0.0 0.031 14.2 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2277) DUF258 PF03193.11 gi|294496518|ref|YP_003543011.1| - 0.018 14.2 0.0 0.075 12.2 0.0 1.9 1 1 0 1 1 1 0 Protein of unknown function, DUF258 GTP_EFTU PF00009.22 gi|294496518|ref|YP_003543011.1| - 0.021 14.2 0.0 0.11 11.9 0.0 2.2 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain DnaB_C PF03796.10 gi|294496518|ref|YP_003543011.1| - 0.022 13.6 0.2 9.8 4.9 0.0 2.9 3 0 0 3 3 3 0 DnaB-like helicase C terminal domain ATP_bind_1 PF03029.12 gi|294496518|ref|YP_003543011.1| - 0.028 13.9 0.0 4.7 6.6 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AIG1 PF04548.11 gi|294496518|ref|YP_003543011.1| - 0.067 12.2 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 AIG1 family HrcA_DNA-bdg PF03444.10 gi|294496519|ref|YP_003543012.1| - 1.8e-35 120.1 0.1 4.7e-35 118.8 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|294496519|ref|YP_003543012.1| - 3.7e-27 93.8 0.3 3.4e-12 45.9 0.0 2.4 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|294496519|ref|YP_003543012.1| - 2.7e-08 33.8 0.0 5.2e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|294496519|ref|YP_003543012.1| - 2e-07 30.5 0.0 3.8e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|294496519|ref|YP_003543012.1| - 0.012 15.2 0.0 0.031 13.9 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Aconitase_2_N PF06434.8 gi|294496519|ref|YP_003543012.1| - 0.031 13.6 0.1 0.038 13.4 0.0 1.4 1 1 0 1 1 1 0 Aconitate hydratase 2 N-terminus Sigma70_r4_2 PF08281.7 gi|294496519|ref|YP_003543012.1| - 0.037 13.4 0.0 0.81 9.2 0.0 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_IclR PF09339.5 gi|294496519|ref|YP_003543012.1| - 0.044 13.3 0.0 0.11 12.0 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain Ribosomal_L9_C PF03948.9 gi|294496519|ref|YP_003543012.1| - 0.095 12.7 0.1 0.2 11.7 0.1 1.6 1 0 0 1 1 1 0 Ribosomal protein L9, C-terminal domain HTH_20 PF12840.2 gi|294496519|ref|YP_003543012.1| - 0.12 12.2 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PRA-PH PF01503.12 gi|294496520|ref|YP_003543013.1| - 1.9e-11 44.0 0.0 2.1e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|294496520|ref|YP_003543013.1| - 0.0009 19.1 0.2 0.0009 19.1 0.1 1.6 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain CBS PF00571.23 gi|294496521|ref|YP_003543014.1| - 2.2e-27 94.5 1.2 1.6e-13 50.1 0.2 2.1 2 0 0 2 2 2 2 CBS domain Ribosomal_L9_C PF03948.9 gi|294496521|ref|YP_003543014.1| - 0.00027 20.9 0.1 0.00073 19.5 0.0 1.7 2 0 0 2 2 2 1 Ribosomal protein L9, C-terminal domain Amidase_2 PF01510.20 gi|294496521|ref|YP_003543014.1| - 0.049 13.6 0.0 0.061 13.3 0.0 1.1 1 0 0 1 1 1 0 N-acetylmuramoyl-L-alanine amidase Aconitase PF00330.15 gi|294496522|ref|YP_003543015.1| - 3.3e-79 266.5 0.1 6.7e-54 183.0 0.0 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|294496522|ref|YP_003543015.1| - 0.039 12.5 0.0 0.069 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF521) CxxCxxCC PF03692.10 gi|294496523|ref|YP_003543016.1| - 5.3e-13 49.2 0.0 1.3e-12 47.9 0.0 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain TrkA_N PF02254.13 gi|294496524|ref|YP_003543017.1| - 1.2e-17 64.0 0.1 3.3e-17 62.5 0.0 1.8 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.15 gi|294496524|ref|YP_003543017.1| - 3e-16 59.3 1.2 6.4e-16 58.3 0.2 1.9 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.14 gi|294496524|ref|YP_003543017.1| - 2.3e-10 40.0 0.3 1.3e-09 37.6 0.3 2.1 2 0 0 2 2 2 1 DHHA1 domain Carb_kinase PF01256.12 gi|294496525|ref|YP_003543018.1| - 2e-57 194.2 0.6 3.2e-57 193.6 0.4 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|294496525|ref|YP_003543018.1| - 2.4e-45 154.1 1.5 1.3e-43 148.5 0.2 2.3 2 0 0 2 2 2 2 YjeF-related protein N-terminus HK PF02110.10 gi|294496525|ref|YP_003543018.1| - 1.7e-05 24.0 0.9 6.2e-05 22.2 0.1 2.1 2 0 0 2 2 2 1 Hydroxyethylthiazole kinase family TP_methylase PF00590.15 gi|294496525|ref|YP_003543018.1| - 0.028 14.1 0.0 0.079 12.6 0.0 1.8 1 0 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases MoaC PF01967.16 gi|294496527|ref|YP_003543020.1| - 4.8e-51 172.0 3.3 5.4e-51 171.8 2.3 1.0 1 0 0 1 1 1 1 MoaC family Pribosyltran_N PF13793.1 gi|294496528|ref|YP_003543021.1| - 9.2e-25 86.6 0.1 5.7e-23 80.8 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|294496528|ref|YP_003543021.1| - 3.7e-15 55.7 0.0 1.2e-14 54.0 0.0 1.8 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|294496528|ref|YP_003543021.1| - 2.6e-09 37.1 1.4 3.4e-09 36.6 0.2 1.7 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|294496528|ref|YP_003543021.1| - 3.9e-07 29.4 0.0 6.5e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|294496528|ref|YP_003543021.1| - 0.0063 15.8 0.0 0.012 14.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase RRM_3 PF08777.6 gi|294496529|ref|YP_003543022.1| - 0.038 13.8 1.4 0.14 11.9 0.2 1.9 1 1 1 2 2 2 0 RNA binding motif HK97-gp10_like PF04883.7 gi|294496529|ref|YP_003543022.1| - 0.96 10.4 3.1 2.6 9.0 2.1 1.7 1 1 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component HhH-GPD PF00730.20 gi|294496530|ref|YP_003543023.1| - 1.2e-15 57.7 0.0 1.6e-15 57.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|294496530|ref|YP_003543023.1| - 0.00028 20.4 0.0 0.00068 19.2 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|294496530|ref|YP_003543023.1| - 0.0011 19.0 0.1 0.0023 18.0 0.0 1.6 1 1 0 1 1 1 1 Helix-hairpin-helix domain TPD PF14811.1 gi|294496531|ref|YP_003543024.1| - 6.7e-46 155.2 0.2 1e-45 154.6 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function TPD sequence-motif FeoB_N PF02421.13 gi|294496533|ref|YP_003543026.1| - 2.6e-59 198.9 0.2 4.3e-59 198.2 0.1 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|294496533|ref|YP_003543026.1| - 6.4e-28 96.8 23.2 3.6e-14 52.6 2.9 3.2 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|294496533|ref|YP_003543026.1| - 2.3e-16 59.7 0.1 4.2e-16 58.9 0.1 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|294496533|ref|YP_003543026.1| - 7.9e-15 54.0 0.3 7.9e-15 54.0 0.2 3.5 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus AIG1 PF04548.11 gi|294496533|ref|YP_003543026.1| - 0.00012 21.2 0.1 0.0002 20.5 0.0 1.2 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.18 gi|294496533|ref|YP_003543026.1| - 0.00036 20.3 1.5 0.081 12.7 0.0 2.4 1 1 1 2 2 2 2 Dynamin family Miro PF08477.8 gi|294496533|ref|YP_003543026.1| - 0.0039 17.6 0.0 0.0065 16.9 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|294496533|ref|YP_003543026.1| - 0.015 14.8 0.2 0.065 12.7 0.0 1.8 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein SRPRB PF09439.5 gi|294496533|ref|YP_003543026.1| - 0.027 13.6 0.0 0.047 12.9 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Fe_dep_repress PF01325.14 gi|294496534|ref|YP_003543027.1| - 3.4e-20 71.7 0.1 2.4e-19 69.0 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|294496534|ref|YP_003543027.1| - 3.3e-16 58.7 0.1 8e-16 57.5 0.1 1.7 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain FeoA PF04023.9 gi|294496534|ref|YP_003543027.1| - 1e-10 41.3 0.2 3.6e-10 39.6 0.1 1.9 2 0 0 2 2 2 1 FeoA domain MarR_2 PF12802.2 gi|294496534|ref|YP_003543027.1| - 3.9e-06 26.4 0.0 1.5e-05 24.5 0.0 2.0 2 1 0 2 2 1 1 MarR family HTH_24 PF13412.1 gi|294496534|ref|YP_003543027.1| - 6.8e-06 25.3 0.0 1.8e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|294496534|ref|YP_003543027.1| - 7.9e-06 25.3 0.0 2e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|294496534|ref|YP_003543027.1| - 8.4e-06 25.4 0.0 3.6e-05 23.3 0.0 2.1 1 1 1 2 2 2 1 MarR family Rrf2 PF02082.15 gi|294496534|ref|YP_003543027.1| - 0.00026 21.0 0.2 0.083 13.0 0.0 3.4 3 1 0 3 3 3 1 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|294496534|ref|YP_003543027.1| - 0.00037 20.2 0.0 0.0039 16.9 0.0 2.5 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|294496534|ref|YP_003543027.1| - 0.00038 20.1 0.0 0.002 17.7 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.11 gi|294496534|ref|YP_003543027.1| - 0.00046 19.6 0.0 0.0017 17.8 0.0 1.9 2 0 0 2 2 2 1 LexA DNA binding domain HrcA_DNA-bdg PF03444.10 gi|294496534|ref|YP_003543027.1| - 0.0015 17.9 0.0 0.0065 15.8 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_27 PF13463.1 gi|294496534|ref|YP_003543027.1| - 0.0038 17.5 0.0 0.013 15.7 0.0 2.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|294496534|ref|YP_003543027.1| - 0.0083 15.9 0.0 0.084 12.7 0.0 2.5 2 1 0 2 2 2 1 Winged helix-turn-helix GntR PF00392.16 gi|294496534|ref|YP_003543027.1| - 0.0084 15.5 0.0 0.023 14.0 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|294496534|ref|YP_003543027.1| - 0.012 15.2 0.1 0.042 13.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family GerE PF00196.14 gi|294496534|ref|YP_003543027.1| - 0.033 13.5 0.0 0.095 12.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF2250 PF10007.4 gi|294496534|ref|YP_003543027.1| - 0.039 13.8 0.0 0.12 12.3 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_AsnC-type PF13404.1 gi|294496534|ref|YP_003543027.1| - 0.054 13.0 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Topoisom_bac PF01131.15 gi|294496534|ref|YP_003543027.1| - 0.054 12.3 0.0 0.092 11.5 0.0 1.3 1 0 0 1 1 1 0 DNA topoisomerase HTH_38 PF13936.1 gi|294496534|ref|YP_003543027.1| - 0.09 12.3 0.1 0.22 11.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain DS PF01916.12 gi|294496535|ref|YP_003543028.1| - 2.6e-88 296.0 0.7 3e-88 295.8 0.5 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Orn_Arg_deC_N PF02784.11 gi|294496536|ref|YP_003543029.1| - 1.2e-10 41.0 0.0 3.5e-10 39.4 0.0 1.8 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|294496536|ref|YP_003543029.1| - 3.2e-07 30.0 0.0 5.1e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PvlArgDC PF01862.11 gi|294496537|ref|YP_003543030.1| - 1.8e-63 213.0 0.0 2e-63 212.8 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) tRNA-synt_1f PF01921.13 gi|294496538|ref|YP_003543031.1| - 6.5e-135 449.4 0.0 8.6e-135 449.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|294496538|ref|YP_003543031.1| - 7.3e-07 28.1 0.0 0.00039 19.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|294496538|ref|YP_003543031.1| - 8.7e-06 25.0 0.0 0.13 11.4 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Transpos_assoc PF13963.1 gi|294496538|ref|YP_003543031.1| - 0.012 15.6 0.0 0.036 14.0 0.0 1.8 1 0 0 1 1 1 0 Transposase-associated domain Methyltransf_11 PF08241.7 gi|294496539|ref|YP_003543032.1| - 8.5e-21 74.2 0.0 1.4e-20 73.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|294496539|ref|YP_003543032.1| - 3.6e-13 49.5 0.1 5.5e-13 48.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|294496539|ref|YP_003543032.1| - 6.6e-13 48.5 0.0 8.8e-13 48.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|294496539|ref|YP_003543032.1| - 7.6e-13 48.6 0.0 1.5e-12 47.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|294496539|ref|YP_003543032.1| - 1.5e-12 47.8 0.0 2.6e-12 47.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|294496539|ref|YP_003543032.1| - 2.4e-09 37.7 0.0 3.9e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|294496539|ref|YP_003543032.1| - 4.3e-06 26.0 0.0 6.6e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_9 PF08003.6 gi|294496539|ref|YP_003543032.1| - 0.00014 20.6 0.0 0.00029 19.6 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) CheR PF01739.13 gi|294496539|ref|YP_003543032.1| - 0.00025 20.3 0.0 0.0027 17.0 0.0 2.1 2 0 0 2 2 2 1 CheR methyltransferase, SAM binding domain NodS PF05401.6 gi|294496539|ref|YP_003543032.1| - 0.00052 19.4 0.0 0.00071 19.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.15 gi|294496539|ref|YP_003543032.1| - 0.00057 19.0 0.0 0.0011 18.1 0.0 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|294496539|ref|YP_003543032.1| - 0.00061 19.2 0.0 0.00092 18.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.9 gi|294496539|ref|YP_003543032.1| - 0.0018 17.4 0.0 0.0023 17.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_26 PF13659.1 gi|294496539|ref|YP_003543032.1| - 0.0043 17.0 0.0 0.0087 16.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|294496539|ref|YP_003543032.1| - 0.016 14.3 0.0 0.025 13.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|294496539|ref|YP_003543032.1| - 0.017 14.5 0.0 0.033 13.5 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_29 PF03141.11 gi|294496539|ref|YP_003543032.1| - 0.017 13.4 0.0 0.019 13.3 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase PucR PF07905.6 gi|294496539|ref|YP_003543032.1| - 0.089 12.3 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Purine catabolism regulatory protein-like family YqhR PF11085.3 gi|294496540|ref|YP_003543033.1| - 1.7 8.1 9.7 1.5 8.3 6.2 1.4 1 1 0 1 1 1 0 Conserved membrane protein YqhR BofA PF07441.6 gi|294496540|ref|YP_003543033.1| - 1.9 8.5 24.2 2.6 8.1 16.8 1.1 1 0 0 1 1 1 0 SigmaK-factor processing regulatory protein BofA Nuc_deoxyrib_tr PF05014.10 gi|294496541|ref|YP_003543034.1| - 1.2e-09 38.0 0.0 1.3e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase DUF4406 PF14359.1 gi|294496541|ref|YP_003543034.1| - 0.0002 21.3 0.0 0.0032 17.5 0.0 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF4406) Peptidase_C39_2 PF13529.1 gi|294496541|ref|YP_003543034.1| - 0.029 14.7 0.0 0.039 14.3 0.0 1.1 1 0 0 1 1 1 0 Peptidase_C39 like family Peptidase_U32 PF01136.14 gi|294496542|ref|YP_003543035.1| - 1.3e-115 384.2 0.0 4.7e-83 277.6 0.0 2.3 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|294496542|ref|YP_003543035.1| - 5.4e-30 103.9 0.0 9e-30 103.2 0.0 1.4 1 0 0 1 1 1 1 Collagenase MazG PF03819.12 gi|294496543|ref|YP_003543036.1| - 1e-17 63.8 0.0 1.2e-17 63.5 0.0 1.1 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|294496543|ref|YP_003543036.1| - 8.3e-07 29.1 0.3 9.7e-07 28.9 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG-like PF12643.2 gi|294496543|ref|YP_003543036.1| - 0.078 12.9 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 MazG-like family His_biosynth PF00977.16 gi|294496544|ref|YP_003543037.1| - 1e-87 293.1 0.5 1.2e-87 292.9 0.4 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|294496544|ref|YP_003543037.1| - 1.4e-06 27.5 0.2 0.0054 15.8 0.0 2.3 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|294496544|ref|YP_003543037.1| - 3e-06 26.3 0.0 0.0011 17.8 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|294496544|ref|YP_003543037.1| - 2.6e-05 23.5 0.2 0.056 12.5 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase TMP-TENI PF02581.12 gi|294496544|ref|YP_003543037.1| - 3.4e-05 23.0 0.1 0.067 12.3 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI DHO_dh PF01180.16 gi|294496544|ref|YP_003543037.1| - 0.00011 21.2 0.0 0.059 12.3 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|294496544|ref|YP_003543037.1| - 0.002 17.4 0.3 0.002 17.4 0.2 2.8 2 2 1 4 4 4 1 PcrB family IMPDH PF00478.20 gi|294496544|ref|YP_003543037.1| - 0.0033 16.3 0.2 0.12 11.2 0.0 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.7 gi|294496544|ref|YP_003543037.1| - 0.025 13.6 0.2 1.9 7.5 0.0 2.2 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator RimM PF01782.13 gi|294496545|ref|YP_003543038.1| - 0.0026 17.6 0.0 0.0035 17.2 0.0 1.1 1 0 0 1 1 1 1 RimM N-terminal domain DUF4198 PF10670.4 gi|294496546|ref|YP_003543039.1| - 5.1e-25 88.7 0.5 4.7e-24 85.6 0.3 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4198) YtkA PF13115.1 gi|294496546|ref|YP_003543039.1| - 0.011 16.0 1.6 0.054 13.8 0.1 2.9 2 1 0 2 2 2 0 YtkA-like CbiM PF01891.11 gi|294496547|ref|YP_003543040.1| - 5.6e-51 173.0 22.2 6.2e-51 172.9 15.4 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region CarboxypepD_reg PF13620.1 gi|294496548|ref|YP_003543041.1| - 1e-05 25.4 0.0 1.5e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|294496548|ref|YP_003543041.1| - 6.5e-05 22.9 0.0 0.00011 22.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) phage_tail_N PF08400.5 gi|294496548|ref|YP_003543041.1| - 0.0054 16.4 0.0 0.0083 15.8 0.0 1.2 1 0 0 1 1 1 1 Prophage tail fibre N-terminal CbiQ PF02361.11 gi|294496549|ref|YP_003543042.1| - 1.3e-33 116.5 14.8 1.8e-33 116.0 10.2 1.2 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|294496550|ref|YP_003543043.1| - 3.8e-32 111.4 0.0 6.1e-32 110.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|294496550|ref|YP_003543043.1| - 1.1e-15 58.3 1.4 6.6e-12 45.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|294496550|ref|YP_003543043.1| - 2.2e-06 27.0 0.3 2.7e-05 23.4 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|294496550|ref|YP_003543043.1| - 1.8e-05 23.9 0.4 0.00083 18.5 0.0 2.2 1 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|294496550|ref|YP_003543043.1| - 0.0011 19.3 0.6 0.0015 18.8 0.4 1.5 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|294496550|ref|YP_003543043.1| - 0.0044 16.9 0.0 0.0071 16.2 0.0 1.3 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|294496550|ref|YP_003543043.1| - 0.0048 16.3 0.0 0.025 14.0 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|294496550|ref|YP_003543043.1| - 0.012 15.8 0.4 0.17 12.0 0.3 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) BCA_ABC_TP_C PF12399.3 gi|294496550|ref|YP_003543043.1| - 0.013 15.1 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.1 gi|294496550|ref|YP_003543043.1| - 0.013 15.0 0.0 0.03 13.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|294496550|ref|YP_003543043.1| - 0.027 13.8 0.5 4.1 6.7 0.1 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.1 gi|294496550|ref|YP_003543043.1| - 0.1 12.1 0.3 0.31 10.6 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|294496550|ref|YP_003543043.1| - 0.11 12.3 0.0 0.27 11.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|294496550|ref|YP_003543043.1| - 0.12 12.0 0.1 0.2 11.2 0.0 1.7 1 1 0 1 1 1 0 Archaeal ATPase DUF1386 PF07138.6 gi|294496550|ref|YP_003543043.1| - 0.13 11.3 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1386) ATP-synt_ab PF00006.20 gi|294496550|ref|YP_003543043.1| - 0.15 11.5 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ABC_tran PF00005.22 gi|294496551|ref|YP_003543044.1| - 4.8e-41 140.2 0.0 5.4e-21 75.3 0.0 2.5 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.14 gi|294496551|ref|YP_003543044.1| - 2e-14 53.3 7.3 7.3e-06 25.3 0.0 4.2 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|294496551|ref|YP_003543044.1| - 4.4e-13 49.8 1.7 0.0077 16.2 0.0 4.2 2 2 1 3 3 3 3 AAA domain RLI PF04068.10 gi|294496551|ref|YP_003543044.1| - 1.2e-12 47.1 3.4 2.4e-12 46.1 2.3 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.22 gi|294496551|ref|YP_003543044.1| - 4.2e-08 32.4 5.1 4.2e-08 32.4 3.6 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_25 PF13481.1 gi|294496551|ref|YP_003543044.1| - 1.9e-06 27.4 0.5 0.14 11.5 0.0 3.7 4 0 0 4 4 4 2 AAA domain DUF258 PF03193.11 gi|294496551|ref|YP_003543044.1| - 8.3e-06 25.0 4.1 0.034 13.3 0.0 3.2 3 0 0 3 3 3 2 Protein of unknown function, DUF258 Fer4_6 PF12837.2 gi|294496551|ref|YP_003543044.1| - 1.3e-05 24.8 12.2 7.5e-05 22.4 2.2 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|294496551|ref|YP_003543044.1| - 4.5e-05 23.7 8.8 0.00015 22.0 6.2 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_29 PF13555.1 gi|294496551|ref|YP_003543044.1| - 4.7e-05 22.8 1.1 0.21 11.1 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|294496551|ref|YP_003543044.1| - 0.00015 22.5 0.6 0.019 15.7 0.0 2.8 2 2 0 2 2 2 1 AAA domain Fer4_9 PF13187.1 gi|294496551|ref|YP_003543044.1| - 0.00031 20.9 9.6 0.00079 19.6 6.7 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|294496551|ref|YP_003543044.1| - 0.00035 20.3 7.0 0.00069 19.4 4.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain RNA_helicase PF00910.17 gi|294496551|ref|YP_003543044.1| - 0.00038 20.6 0.5 1.4 9.1 0.0 2.8 3 0 0 3 3 2 2 RNA helicase Rad17 PF03215.10 gi|294496551|ref|YP_003543044.1| - 0.0004 19.2 0.0 0.4 9.3 0.0 2.3 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_15 PF13175.1 gi|294496551|ref|YP_003543044.1| - 0.00044 19.4 0.2 0.0094 15.0 0.0 2.9 4 0 0 4 4 4 1 AAA ATPase domain Fer4_2 PF12797.2 gi|294496551|ref|YP_003543044.1| - 0.00085 19.1 3.5 0.00085 19.1 2.4 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_22 PF13401.1 gi|294496551|ref|YP_003543044.1| - 0.001 19.2 0.4 0.29 11.2 0.0 2.8 2 1 0 2 2 2 1 AAA domain Miro PF08477.8 gi|294496551|ref|YP_003543044.1| - 0.0011 19.5 0.3 0.034 14.6 0.0 2.6 2 1 0 2 2 2 1 Miro-like protein SbcCD_C PF13558.1 gi|294496551|ref|YP_003543044.1| - 0.0011 18.8 0.0 1.6 8.7 0.0 2.9 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.1 gi|294496551|ref|YP_003543044.1| - 0.0023 17.8 0.2 1.9 8.4 0.0 3.5 4 0 0 4 4 3 1 AAA domain AAA PF00004.24 gi|294496551|ref|YP_003543044.1| - 0.0025 18.0 0.0 1.2 9.3 0.0 2.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Fer4_10 PF13237.1 gi|294496551|ref|YP_003543044.1| - 0.0039 16.9 12.0 0.025 14.3 1.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_23 PF13476.1 gi|294496551|ref|YP_003543044.1| - 0.0051 17.1 3.7 1.3 9.3 0.8 2.6 2 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|294496551|ref|YP_003543044.1| - 0.0062 16.2 0.2 0.99 9.0 0.0 2.4 2 0 0 2 2 2 1 NACHT domain VirE PF05272.6 gi|294496551|ref|YP_003543044.1| - 0.011 15.2 0.0 1.6 8.1 0.0 2.3 2 0 0 2 2 2 0 Virulence-associated protein E ArgK PF03308.11 gi|294496551|ref|YP_003543044.1| - 0.014 14.1 1.7 1 8.0 0.1 2.2 2 0 0 2 2 2 0 ArgK protein Fer4_11 PF13247.1 gi|294496551|ref|YP_003543044.1| - 0.02 14.7 3.6 0.04 13.7 2.5 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_10 PF12846.2 gi|294496551|ref|YP_003543044.1| - 0.023 14.1 1.1 1.9 7.8 0.0 2.7 3 0 0 3 3 2 0 AAA-like domain AAA_33 PF13671.1 gi|294496551|ref|YP_003543044.1| - 0.026 14.3 1.0 0.52 10.1 0.1 2.9 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|294496551|ref|YP_003543044.1| - 0.03 14.2 0.2 2.3 8.1 0.0 2.9 2 2 0 2 2 2 0 50S ribosome-binding GTPase Fer4_16 PF13484.1 gi|294496551|ref|YP_003543044.1| - 0.037 14.7 0.6 0.037 14.7 0.4 2.6 3 0 0 3 3 1 0 4Fe-4S double cluster binding domain AAA_16 PF13191.1 gi|294496551|ref|YP_003543044.1| - 0.077 12.9 3.7 3.2 7.7 0.0 2.6 3 0 0 3 3 2 0 AAA ATPase domain Fer4_17 PF13534.1 gi|294496551|ref|YP_003543044.1| - 0.093 13.0 4.7 0.12 12.7 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain MobB PF03205.9 gi|294496551|ref|YP_003543044.1| - 0.1 12.3 2.3 1.3 8.7 0.0 2.9 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|294496551|ref|YP_003543044.1| - 0.12 11.2 0.3 1.7 7.4 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain DUF87 PF01935.12 gi|294496551|ref|YP_003543044.1| - 0.14 11.9 2.3 7.6 6.2 0.0 2.8 3 0 0 3 3 2 0 Domain of unknown function DUF87 AAA_5 PF07728.9 gi|294496551|ref|YP_003543044.1| - 0.26 11.0 1.0 35 4.1 0.1 3.0 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) Fer4_4 PF12800.2 gi|294496551|ref|YP_003543044.1| - 0.27 11.6 13.4 0.062 13.6 1.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain NTPase_1 PF03266.10 gi|294496551|ref|YP_003543044.1| - 0.29 10.8 2.4 13 5.4 0.0 3.1 3 0 0 3 3 3 0 NTPase Fer4_8 PF13183.1 gi|294496551|ref|YP_003543044.1| - 0.54 10.3 9.9 0.055 13.5 1.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|294496551|ref|YP_003543044.1| - 0.54 10.7 10.6 1.1 9.7 6.2 2.2 1 1 1 2 2 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|294496551|ref|YP_003543044.1| - 0.75 10.5 16.0 0.049 14.2 4.2 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain FUSC_2 PF13515.1 gi|294496552|ref|YP_003543045.1| - 0.0067 16.3 2.4 0.0077 16.1 1.7 1.1 1 0 0 1 1 1 1 Fusaric acid resistance protein-like DUF1469 PF07332.6 gi|294496552|ref|YP_003543045.1| - 0.26 11.0 3.8 0.34 10.6 2.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Rab5ip PF07019.7 gi|294496552|ref|YP_003543045.1| - 4.3 7.5 7.2 9 6.5 5.0 1.4 1 1 0 1 1 1 0 Rab5-interacting protein (Rab5ip) Lactamase_B_2 PF12706.2 gi|294496553|ref|YP_003543046.1| - 1.6e-09 37.5 0.1 6.4e-09 35.6 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|294496553|ref|YP_003543046.1| - 0.0047 16.6 4.3 0.0089 15.6 1.7 2.1 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|294496553|ref|YP_003543046.1| - 0.006 16.3 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Thioredoxin PF00085.15 gi|294496554|ref|YP_003543047.1| - 1.2e-23 82.7 0.0 1.3e-23 82.6 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|294496554|ref|YP_003543047.1| - 4.6e-12 46.1 0.1 2.2e-11 43.9 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|294496554|ref|YP_003543047.1| - 2.6e-08 33.8 0.0 8.5e-06 25.8 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like KaiB PF07689.7 gi|294496554|ref|YP_003543047.1| - 3.8e-06 26.2 0.0 4.6e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 KaiB domain Thioredoxin_3 PF13192.1 gi|294496554|ref|YP_003543047.1| - 8e-06 25.5 0.0 9.3e-06 25.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|294496554|ref|YP_003543047.1| - 3.3e-05 23.8 0.1 7.8e-05 22.5 0.0 1.7 1 1 1 2 2 2 1 Glutaredoxin DUF836 PF05768.9 gi|294496554|ref|YP_003543047.1| - 7.8e-05 22.8 0.0 9.3e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Redoxin PF08534.5 gi|294496554|ref|YP_003543047.1| - 0.00043 19.8 0.1 0.0038 16.7 0.0 1.9 1 1 1 2 2 2 1 Redoxin Thioredoxin_9 PF14595.1 gi|294496554|ref|YP_003543047.1| - 0.0006 19.3 0.0 0.0007 19.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TrbC_Ftype PF09673.5 gi|294496554|ref|YP_003543047.1| - 0.0027 17.2 0.0 0.003 17.1 0.0 1.1 1 0 0 1 1 1 1 Type-F conjugative transfer system pilin assembly protein HyaE PF07449.6 gi|294496554|ref|YP_003543047.1| - 0.026 14.3 0.0 0.032 14.1 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Thioredoxin_7 PF13899.1 gi|294496554|ref|YP_003543047.1| - 0.059 13.3 0.0 0.11 12.4 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin-like AhpC-TSA PF00578.16 gi|294496554|ref|YP_003543047.1| - 0.063 12.9 0.0 0.11 12.1 0.0 1.5 1 1 0 1 1 1 0 AhpC/TSA family DSBA PF01323.15 gi|294496554|ref|YP_003543047.1| - 0.098 12.2 0.0 0.69 9.4 0.0 1.8 1 1 1 2 2 2 0 DSBA-like thioredoxin domain F420_ligase PF01996.11 gi|294496555|ref|YP_003543048.1| - 1.1e-66 224.1 0.1 1.3e-66 223.9 0.1 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase ThiC PF01964.13 gi|294496556|ref|YP_003543049.1| - 1.2e-144 482.0 0.1 1.3e-144 481.8 0.0 1.0 1 0 0 1 1 1 1 ThiC family MTHFR PF02219.12 gi|294496557|ref|YP_003543050.1| - 8.8e-31 107.0 0.0 1e-30 106.8 0.0 1.1 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase MTHFR_C PF12225.3 gi|294496558|ref|YP_003543051.1| - 2.2e-29 100.8 0.3 2.2e-29 100.8 0.2 2.0 2 0 0 2 2 2 1 Methylene-tetrahydrofolate reductase C terminal Herpes_UL49_1 PF03117.9 gi|294496558|ref|YP_003543051.1| - 0.067 12.2 0.2 0.12 11.4 0.1 1.4 1 1 0 1 1 1 0 UL49 family zf-RING_6 PF14835.1 gi|294496558|ref|YP_003543051.1| - 0.68 9.7 3.7 0.58 9.9 0.8 2.1 2 0 0 2 2 2 0 zf-RING of BARD1-type protein Hydantoinase_A PF01968.13 gi|294496559|ref|YP_003543052.1| - 1.2e-81 273.9 0.2 2.1e-80 269.9 0.0 2.8 3 1 0 3 3 3 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|294496559|ref|YP_003543052.1| - 7.3e-45 152.6 3.0 2.3e-41 141.2 0.2 2.8 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|294496559|ref|YP_003543052.1| - 1.4e-06 26.8 1.6 0.0023 16.3 0.1 2.2 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|294496559|ref|YP_003543052.1| - 0.0013 18.1 0.2 1.7 7.8 0.0 2.9 3 0 0 3 3 3 2 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.1 gi|294496559|ref|YP_003543052.1| - 7 6.5 6.1 4.4 7.1 0.4 3.1 2 2 0 2 2 2 0 Cell division protein FtsA Pterin_bind PF00809.17 gi|294496560|ref|YP_003543053.1| - 5e-43 146.9 0.0 8.2e-43 146.2 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme THF_DHG_CYH_C PF02882.14 gi|294496561|ref|YP_003543054.1| - 1.7e-64 215.7 2.4 2.2e-64 215.3 1.7 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|294496561|ref|YP_003543054.1| - 9.8e-42 141.6 0.6 1.5e-41 141.1 0.4 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AdoHcyase_NAD PF00670.16 gi|294496561|ref|YP_003543054.1| - 0.011 15.5 2.6 0.76 9.6 1.8 2.3 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF4089 PF13318.1 gi|294496561|ref|YP_003543054.1| - 0.088 13.1 0.2 0.47 10.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4089) PTS_IIB PF02302.12 gi|294496561|ref|YP_003543054.1| - 0.79 10.2 3.5 0.36 11.3 0.3 2.0 3 0 0 3 3 3 0 PTS system, Lactose/Cellobiose specific IIB subunit SHMT PF00464.14 gi|294496562|ref|YP_003543055.1| - 2.9e-168 559.3 0.3 3.5e-168 559.1 0.2 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|294496562|ref|YP_003543055.1| - 2.6e-09 36.4 0.0 3.6e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|294496562|ref|YP_003543055.1| - 1.2e-07 31.1 0.1 1.5e-07 30.8 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|294496562|ref|YP_003543055.1| - 0.00087 18.4 0.1 0.0014 17.7 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.15 gi|294496562|ref|YP_003543055.1| - 0.015 13.8 0.0 0.026 13.0 0.0 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Formyl_trans_N PF00551.14 gi|294496563|ref|YP_003543056.1| - 2.9e-55 186.6 0.0 3.3e-55 186.4 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase HTH_3 PF01381.17 gi|294496564|ref|YP_003543057.1| - 2.4e-08 33.7 0.0 8.1e-08 31.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|294496564|ref|YP_003543057.1| - 5.9e-08 32.6 0.1 2.2e-07 30.8 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|294496564|ref|YP_003543057.1| - 2.7e-06 27.4 0.1 5.4e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|294496564|ref|YP_003543057.1| - 0.0014 18.2 0.2 0.0052 16.3 0.1 2.1 2 0 0 2 2 2 1 HTH domain NUMOD1 PF07453.8 gi|294496564|ref|YP_003543057.1| - 0.019 14.7 0.1 0.053 13.3 0.1 1.8 1 0 0 1 1 1 0 NUMOD1 domain HTH_25 PF13413.1 gi|294496564|ref|YP_003543057.1| - 0.051 13.2 0.0 0.13 11.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MerR_1 PF13411.1 gi|294496564|ref|YP_003543057.1| - 0.051 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_23 PF13384.1 gi|294496564|ref|YP_003543057.1| - 0.075 12.7 0.0 0.22 11.1 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.1 gi|294496564|ref|YP_003543057.1| - 0.11 12.5 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|294496564|ref|YP_003543057.1| - 0.14 12.3 0.1 0.47 10.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1743 PF08489.6 gi|294496565|ref|YP_003543058.1| - 2.1e-39 133.9 0.2 5.4e-39 132.5 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|294496565|ref|YP_003543058.1| - 0.007 16.1 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain zinc-ribbons_6 PF07191.7 gi|294496565|ref|YP_003543058.1| - 0.023 14.4 1.2 0.054 13.3 0.8 1.6 1 0 0 1 1 1 0 zinc-ribbons OrfB_Zn_ribbon PF07282.6 gi|294496565|ref|YP_003543058.1| - 0.024 14.2 2.2 0.066 12.8 1.5 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|294496565|ref|YP_003543058.1| - 0.041 13.6 1.1 0.082 12.6 0.7 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.2 gi|294496565|ref|YP_003543058.1| - 3.2 7.6 7.1 7.1 6.5 4.9 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain NAD_synthase PF02540.12 gi|294496566|ref|YP_003543059.1| - 4.3e-79 264.8 0.0 5e-79 264.6 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|294496566|ref|YP_003543059.1| - 6.8e-05 21.5 0.0 0.00044 18.9 0.0 1.9 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|294496566|ref|YP_003543059.1| - 0.0014 18.2 0.0 0.0045 16.5 0.0 1.7 2 0 0 2 2 2 1 Asparagine synthase KaiC PF06745.8 gi|294496567|ref|YP_003543060.1| - 6.9e-69 231.4 5.7 5.4e-37 127.0 0.1 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|294496567|ref|YP_003543060.1| - 3.5e-12 46.1 0.4 4e-06 26.3 0.1 3.6 2 1 1 3 3 3 2 AAA domain DnaB_C PF03796.10 gi|294496567|ref|YP_003543060.1| - 2.6e-09 36.3 0.0 0.0009 18.1 0.0 2.4 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain GvpD PF07088.6 gi|294496567|ref|YP_003543060.1| - 8.8e-09 34.2 1.0 1.3e-06 26.9 0.2 3.0 2 1 0 2 2 2 1 GvpD gas vesicle protein Arch_ATPase PF01637.13 gi|294496567|ref|YP_003543060.1| - 6.5e-08 32.5 0.5 0.0053 16.4 0.0 2.3 2 0 0 2 2 2 2 Archaeal ATPase AAA_19 PF13245.1 gi|294496567|ref|YP_003543060.1| - 2e-07 30.6 0.4 5.7e-05 22.7 0.0 3.0 3 0 0 3 3 2 1 Part of AAA domain AAA_22 PF13401.1 gi|294496567|ref|YP_003543060.1| - 9.1e-07 29.0 0.1 0.0017 18.5 0.1 2.5 2 0 0 2 2 2 2 AAA domain RecA PF00154.16 gi|294496567|ref|YP_003543060.1| - 1.5e-06 27.4 2.2 0.0024 17.0 0.0 2.9 2 1 0 2 2 2 2 recA bacterial DNA recombination protein DUF2075 PF09848.4 gi|294496567|ref|YP_003543060.1| - 2.1e-06 26.9 0.4 0.052 12.5 0.3 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) DEAD PF00270.24 gi|294496567|ref|YP_003543060.1| - 1.5e-05 24.5 0.6 0.017 14.6 0.0 2.9 2 2 0 2 2 2 2 DEAD/DEAH box helicase AAA_14 PF13173.1 gi|294496567|ref|YP_003543060.1| - 1.9e-05 24.5 5.1 0.0093 15.8 0.3 3.6 3 2 0 3 3 2 2 AAA domain Rad51 PF08423.6 gi|294496567|ref|YP_003543060.1| - 0.00016 20.7 0.5 0.45 9.3 0.0 2.5 2 0 0 2 2 2 2 Rad51 AAA_18 PF13238.1 gi|294496567|ref|YP_003543060.1| - 0.00087 19.6 0.7 1 9.6 0.0 3.0 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|294496567|ref|YP_003543060.1| - 0.0014 18.4 0.0 0.74 9.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|294496567|ref|YP_003543060.1| - 0.002 17.6 0.1 0.0072 15.8 0.0 1.9 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.7 gi|294496567|ref|YP_003543060.1| - 0.0021 17.1 1.2 0.83 8.7 0.0 2.9 3 1 0 3 3 3 1 Zeta toxin PhoH PF02562.11 gi|294496567|ref|YP_003543060.1| - 0.0035 16.5 7.1 1.4 8.0 0.0 4.1 3 1 1 4 4 4 2 PhoH-like protein ResIII PF04851.10 gi|294496567|ref|YP_003543060.1| - 0.0037 17.1 1.5 0.57 9.9 0.7 2.8 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit T2SE PF00437.15 gi|294496567|ref|YP_003543060.1| - 0.0062 15.4 2.4 0.32 9.8 0.1 2.8 3 0 0 3 3 3 1 Type II/IV secretion system protein AAA_30 PF13604.1 gi|294496567|ref|YP_003543060.1| - 0.0094 15.5 0.9 1.4 8.4 0.0 2.4 2 1 0 2 2 2 1 AAA domain cobW PF02492.14 gi|294496567|ref|YP_003543060.1| - 0.015 14.7 0.5 1.3 8.4 0.0 2.6 3 0 0 3 3 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|294496567|ref|YP_003543060.1| - 0.015 15.4 7.3 1.3 9.1 0.0 3.0 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|294496567|ref|YP_003543060.1| - 0.018 14.5 0.6 3.1 7.2 0.0 2.9 3 1 1 4 4 3 0 Sigma-54 interaction domain Zot PF05707.7 gi|294496567|ref|YP_003543060.1| - 0.02 14.3 0.2 0.67 9.3 0.0 2.4 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_16 PF13191.1 gi|294496567|ref|YP_003543060.1| - 0.021 14.8 1.7 0.6 10.0 0.0 2.5 2 1 0 2 2 2 0 AAA ATPase domain IstB_IS21 PF01695.12 gi|294496567|ref|YP_003543060.1| - 0.035 13.5 2.6 2.9 7.2 0.1 3.0 3 1 1 4 4 4 0 IstB-like ATP binding protein Myotub-related PF06602.9 gi|294496567|ref|YP_003543060.1| - 0.038 12.7 0.0 0.053 12.2 0.0 1.2 1 0 0 1 1 1 0 Myotubularin-like phosphatase domain AAA_10 PF12846.2 gi|294496567|ref|YP_003543060.1| - 0.04 13.3 0.1 2.9 7.2 0.0 2.8 2 1 1 3 3 3 0 AAA-like domain AAA_35 PF14516.1 gi|294496567|ref|YP_003543060.1| - 0.069 11.7 0.0 0.14 10.7 0.0 1.6 1 1 0 1 1 1 0 AAA-like domain NACHT PF05729.7 gi|294496567|ref|YP_003543060.1| - 0.073 12.7 1.2 0.16 11.6 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_29 PF13555.1 gi|294496567|ref|YP_003543060.1| - 0.14 11.7 2.3 1 8.9 0.0 2.8 3 0 0 3 3 3 0 P-loop containing region of AAA domain ATP_bind_1 PF03029.12 gi|294496567|ref|YP_003543060.1| - 0.16 11.5 3.3 0.4 10.1 0.0 2.5 2 1 1 3 3 3 0 Conserved hypothetical ATP binding protein FtsK_SpoIIIE PF01580.13 gi|294496567|ref|YP_003543060.1| - 0.49 9.8 0.0 0.49 9.8 0.0 1.9 3 0 0 3 3 2 0 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|294496567|ref|YP_003543060.1| - 1.2 10.0 7.3 1.4 9.7 0.3 3.0 2 2 0 2 2 2 0 AAA domain zf-C3HC4_3 PF13920.1 gi|294496568|ref|YP_003543061.1| - 0.031 13.9 1.6 0.048 13.3 1.1 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) UPF0278 PF08745.6 gi|294496568|ref|YP_003543061.1| - 0.038 13.2 0.3 0.1 11.8 0.1 1.7 1 1 1 2 2 2 0 UPF0278 family zinc-ribbons_6 PF07191.7 gi|294496568|ref|YP_003543061.1| - 0.04 13.7 0.1 0.062 13.0 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbons DNA_ligase_ZBD PF03119.11 gi|294496568|ref|YP_003543061.1| - 0.055 13.1 0.2 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.9 gi|294496568|ref|YP_003543061.1| - 0.18 11.2 1.7 0.36 10.3 1.2 1.6 1 0 0 1 1 1 0 Rad50 zinc hook motif Pribosyltran PF00156.22 gi|294496569|ref|YP_003543062.1| - 1e-23 83.4 0.1 1.9e-23 82.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|294496569|ref|YP_003543062.1| - 0.00061 19.0 0.0 0.00084 18.5 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|294496569|ref|YP_003543062.1| - 0.0028 16.9 0.1 0.0063 15.8 0.1 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase GerE PF00196.14 gi|294496569|ref|YP_003543062.1| - 0.0095 15.2 0.1 0.05 12.9 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Pribosyl_synth PF14572.1 gi|294496569|ref|YP_003543062.1| - 0.019 14.7 0.3 0.27 10.9 0.2 2.2 1 1 1 2 2 2 0 Phosphoribosyl synthetase-associated domain HTH_7 PF02796.10 gi|294496569|ref|YP_003543062.1| - 0.023 14.5 0.8 0.077 12.8 0.0 2.2 3 0 0 3 3 3 0 Helix-turn-helix domain of resolvase Fe_dep_repress PF01325.14 gi|294496569|ref|YP_003543062.1| - 0.042 13.7 0.1 3.8 7.5 0.0 2.8 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|294496569|ref|YP_003543062.1| - 0.046 13.3 2.2 0.35 10.5 0.0 2.6 3 0 0 3 3 3 0 HTH domain Terminase_5 PF06056.7 gi|294496569|ref|YP_003543062.1| - 0.056 13.0 0.0 1.6 8.3 0.0 2.4 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) Rho_N PF07498.7 gi|294496569|ref|YP_003543062.1| - 0.091 12.5 0.4 47 3.8 0.2 3.4 4 0 0 4 4 4 0 Rho termination factor, N-terminal domain CBAH PF02275.13 gi|294496569|ref|YP_003543062.1| - 0.13 11.6 0.0 0.17 11.2 0.0 1.1 1 0 0 1 1 1 0 Linear amide C-N hydrolases, choloylglycine hydrolase family HTH_23 PF13384.1 gi|294496569|ref|YP_003543062.1| - 0.14 11.8 0.0 0.55 9.9 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.1 gi|294496569|ref|YP_003543062.1| - 0.15 12.0 0.0 1.9 8.6 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain DHH PF01368.15 gi|294496570|ref|YP_003543063.1| - 3.3e-11 43.0 0.1 6.2e-11 42.1 0.1 1.4 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|294496570|ref|YP_003543063.1| - 4.3e-09 36.0 0.0 1.4e-08 34.4 0.0 1.9 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DnaJ_CXXCXGXG PF00684.14 gi|294496570|ref|YP_003543063.1| - 6.6e-09 35.6 13.8 6.6e-09 35.6 9.5 2.4 2 0 0 2 2 2 1 DnaJ central domain S1 PF00575.18 gi|294496570|ref|YP_003543063.1| - 1.4e-06 28.2 0.2 5.2e-06 26.4 0.1 2.0 1 0 0 1 1 1 1 S1 RNA binding domain S1_2 PF13509.1 gi|294496570|ref|YP_003543063.1| - 0.07 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 S1 domain zf-C4pol PF14260.1 gi|294496570|ref|YP_003543063.1| - 2.1 8.4 10.6 0.43 10.6 2.2 2.5 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta DZR PF12773.2 gi|294496570|ref|YP_003543063.1| - 2.3 8.0 18.0 13 5.6 0.4 3.3 2 1 1 3 3 3 0 Double zinc ribbon HypA PF01155.14 gi|294496570|ref|YP_003543063.1| - 3.1 7.5 21.2 1.5 8.5 0.5 4.2 2 1 2 4 4 4 0 Hydrogenase expression/synthesis hypA family RRN7 PF11781.3 gi|294496570|ref|YP_003543063.1| - 3.4 7.2 6.6 3.2 7.3 0.2 3.5 2 1 1 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 Band_7 PF01145.20 gi|294496571|ref|YP_003543064.1| - 1e-32 113.4 4.0 1.5e-32 112.9 2.8 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|294496571|ref|YP_003543064.1| - 0.01 15.3 0.3 0.028 13.9 0.1 1.8 2 0 0 2 2 2 0 SPFH domain-Band 7 family NfeD PF01957.13 gi|294496572|ref|YP_003543065.1| - 5.6e-32 110.8 0.1 5.6e-32 110.8 0.1 2.8 3 1 1 4 4 4 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|294496572|ref|YP_003543065.1| - 0.00095 18.8 0.7 0.002 17.8 0.5 1.5 1 0 0 1 1 1 1 Clp protease Adeno_E3_14_5 PF04834.7 gi|294496572|ref|YP_003543065.1| - 0.28 11.6 2.2 2.5 8.5 0.1 2.4 2 0 0 2 2 2 0 Early E3 14.5 kDa protein AIRS_C PF02769.17 gi|294496573|ref|YP_003543066.1| - 2.4e-19 69.8 0.9 4.9e-19 68.8 0.6 1.6 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|294496573|ref|YP_003543066.1| - 2e-11 43.9 0.1 5.8e-11 42.4 0.1 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Vinculin PF01044.14 gi|294496573|ref|YP_003543066.1| - 0.062 11.3 0.0 0.1 10.6 0.0 1.2 1 0 0 1 1 1 0 Vinculin family GATase PF00117.23 gi|294496574|ref|YP_003543067.1| - 2.8e-32 111.7 0.0 3.2e-32 111.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|294496574|ref|YP_003543067.1| - 4.2e-07 29.6 0.2 2e-06 27.5 0.1 1.9 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|294496574|ref|YP_003543067.1| - 1.3e-06 28.0 0.1 2.9e-06 26.8 0.0 1.6 2 1 0 2 2 2 1 Peptidase C26 SNO PF01174.14 gi|294496574|ref|YP_003543067.1| - 1.6e-06 27.8 0.0 1.6e-05 24.6 0.0 2.0 1 1 0 1 1 1 1 SNO glutamine amidotransferase family DJ-1_PfpI PF01965.19 gi|294496574|ref|YP_003543067.1| - 0.011 15.1 0.0 0.017 14.5 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family UDPG_MGDP_dh_N PF03721.9 gi|294496575|ref|YP_003543068.1| - 9.4e-63 210.9 0.1 1.8e-62 210.0 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|294496575|ref|YP_003543068.1| - 8.8e-36 122.0 0.0 1.8e-35 121.0 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|294496575|ref|YP_003543068.1| - 9.7e-29 99.6 0.0 3.2e-28 97.9 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|294496575|ref|YP_003543068.1| - 1.4e-08 34.6 0.0 4.6e-08 32.9 0.0 1.9 2 0 0 2 2 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|294496575|ref|YP_003543068.1| - 6.6e-07 29.6 0.0 0.0055 17.0 0.0 3.3 3 0 0 3 3 3 2 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|294496575|ref|YP_003543068.1| - 2.1e-05 24.2 0.0 4.6e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|294496575|ref|YP_003543068.1| - 0.0005 20.4 0.1 0.0015 18.8 0.0 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|294496575|ref|YP_003543068.1| - 0.001 18.5 0.0 0.0029 17.0 0.0 1.8 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_11 PF14833.1 gi|294496575|ref|YP_003543068.1| - 0.0016 18.4 0.1 0.01 15.9 0.0 2.2 3 0 0 3 3 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NAD_binding_2 PF03446.10 gi|294496575|ref|YP_003543068.1| - 0.0023 17.7 0.0 0.4 10.5 0.0 2.6 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.16 gi|294496575|ref|YP_003543068.1| - 0.0035 16.9 0.0 0.0061 16.1 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|294496575|ref|YP_003543068.1| - 0.0042 17.0 0.2 0.018 15.0 0.0 2.2 2 0 0 2 2 1 1 TrkA-N domain GFO_IDH_MocA PF01408.17 gi|294496575|ref|YP_003543068.1| - 0.0056 17.1 0.0 0.015 15.8 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold FAD_binding_3 PF01494.14 gi|294496575|ref|YP_003543068.1| - 0.021 13.8 0.0 0.032 13.2 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|294496575|ref|YP_003543068.1| - 0.03 13.4 0.0 0.11 11.6 0.0 1.9 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.19 gi|294496575|ref|YP_003543068.1| - 0.039 12.8 0.3 0.09 11.6 0.2 1.6 1 0 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|294496575|ref|YP_003543068.1| - 0.11 12.4 0.1 0.26 11.1 0.0 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|294496575|ref|YP_003543068.1| - 0.22 11.5 0.2 0.22 11.5 0.1 1.8 2 0 0 2 2 1 0 NAD(P)-binding Rossmann-like domain MTH865 PF07747.6 gi|294496576|ref|YP_003543069.1| - 6.3e-29 99.4 0.1 6.9e-29 99.2 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family HTH_5 PF01022.15 gi|294496577|ref|YP_003543070.1| - 1.9e-05 24.1 0.0 7.4e-05 22.3 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|294496577|ref|YP_003543070.1| - 0.00029 20.5 0.0 0.00056 19.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|294496577|ref|YP_003543070.1| - 0.0046 16.7 0.1 0.012 15.4 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4441 PF14536.1 gi|294496577|ref|YP_003543070.1| - 0.0048 16.8 4.0 0.0048 16.8 2.7 2.0 2 1 0 2 2 2 1 Domain of unknown function (DUF4441) SNF2_N PF00176.18 gi|294496577|ref|YP_003543070.1| - 0.0084 14.9 2.1 0.012 14.4 1.4 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Rio2_N PF09202.6 gi|294496577|ref|YP_003543070.1| - 0.0086 16.1 0.7 0.22 11.6 0.1 2.5 2 0 0 2 2 2 1 Rio2, N-terminal PNPase PF03726.9 gi|294496577|ref|YP_003543070.1| - 0.019 15.2 4.2 0.15 12.3 0.0 3.2 3 1 0 3 3 3 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain TarH PF02203.10 gi|294496577|ref|YP_003543070.1| - 0.043 13.6 0.1 0.09 12.6 0.0 1.6 2 0 0 2 2 2 0 Tar ligand binding domain homologue HTH_34 PF13601.1 gi|294496577|ref|YP_003543070.1| - 0.054 13.5 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain DapH_N PF08503.5 gi|294496577|ref|YP_003543070.1| - 0.083 13.0 0.2 0.21 11.7 0.1 1.8 1 1 0 1 1 1 0 Tetrahydrodipicolinate succinyltransferase N-terminal RPAP2_Rtr1 PF04181.8 gi|294496577|ref|YP_003543070.1| - 0.091 12.8 1.0 0.3 11.1 0.1 2.0 1 1 1 2 2 2 0 Rtr1/RPAP2 family CTD_bind PF04818.8 gi|294496577|ref|YP_003543070.1| - 0.12 12.6 1.2 0.76 10.0 0.2 2.4 1 1 1 2 2 2 0 RNA polymerase II-binding domain. DUF445 PF04286.7 gi|294496577|ref|YP_003543070.1| - 0.77 9.2 3.4 1.3 8.4 1.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF445) T2SE PF00437.15 gi|294496578|ref|YP_003543071.1| - 1.8e-10 40.2 0.1 3.3e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|294496578|ref|YP_003543071.1| - 1.9e-10 40.2 0.4 7.7e-10 38.2 0.3 2.1 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|294496578|ref|YP_003543071.1| - 3.1e-06 26.6 0.3 9.5e-06 25.1 0.2 1.9 1 0 0 1 1 1 1 KH domain AAA_19 PF13245.1 gi|294496578|ref|YP_003543071.1| - 0.00049 19.8 0.0 0.0013 18.4 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|294496578|ref|YP_003543071.1| - 0.00081 20.2 0.0 0.0025 18.6 0.0 1.9 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|294496578|ref|YP_003543071.1| - 0.001 18.5 0.0 0.0018 17.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|294496578|ref|YP_003543071.1| - 0.0035 17.2 0.0 0.008 16.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain KH_2 PF07650.12 gi|294496578|ref|YP_003543071.1| - 0.0036 16.8 0.3 0.013 15.0 0.2 2.0 1 0 0 1 1 1 1 KH domain CbiA PF01656.18 gi|294496578|ref|YP_003543071.1| - 0.0041 16.5 0.0 0.01 15.2 0.0 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_18 PF13238.1 gi|294496578|ref|YP_003543071.1| - 0.0045 17.3 0.0 0.03 14.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|294496578|ref|YP_003543071.1| - 0.0047 16.4 0.0 0.011 15.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain KTI12 PF08433.5 gi|294496578|ref|YP_003543071.1| - 0.012 14.7 0.0 0.021 14.0 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ArgK PF03308.11 gi|294496578|ref|YP_003543071.1| - 0.015 14.1 0.0 0.032 13.0 0.0 1.5 1 0 0 1 1 1 0 ArgK protein Zeta_toxin PF06414.7 gi|294496578|ref|YP_003543071.1| - 0.017 14.2 0.0 0.032 13.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin UPF0079 PF02367.12 gi|294496578|ref|YP_003543071.1| - 0.021 14.4 0.0 0.045 13.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|294496578|ref|YP_003543071.1| - 0.022 14.1 0.0 0.047 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|294496578|ref|YP_003543071.1| - 0.025 14.6 0.0 0.064 13.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_30 PF13604.1 gi|294496578|ref|YP_003543071.1| - 0.034 13.7 0.0 0.063 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|294496578|ref|YP_003543071.1| - 0.037 13.4 0.0 0.12 11.7 0.0 1.8 1 1 1 2 2 2 0 Thymidylate kinase KH_4 PF13083.1 gi|294496578|ref|YP_003543071.1| - 0.038 13.6 0.2 0.12 11.9 0.2 1.9 1 0 0 1 1 1 0 KH domain KaiC PF06745.8 gi|294496578|ref|YP_003543071.1| - 0.041 13.0 0.0 0.11 11.6 0.0 1.7 1 0 0 1 1 1 0 KaiC AAA_28 PF13521.1 gi|294496578|ref|YP_003543071.1| - 0.057 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|294496578|ref|YP_003543071.1| - 0.06 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Viral_helicase1 PF01443.13 gi|294496578|ref|YP_003543071.1| - 0.064 12.7 0.0 4.2 6.8 0.0 2.5 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_10 PF12846.2 gi|294496578|ref|YP_003543071.1| - 0.066 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_5 PF07728.9 gi|294496578|ref|YP_003543071.1| - 0.068 12.8 0.0 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) APS_kinase PF01583.15 gi|294496578|ref|YP_003543071.1| - 0.084 12.5 0.0 0.36 10.4 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_11 PF13086.1 gi|294496578|ref|YP_003543071.1| - 0.099 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|294496578|ref|YP_003543071.1| - 0.1 12.7 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|294496578|ref|YP_003543071.1| - 0.11 12.7 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|294496578|ref|YP_003543071.1| - 0.12 12.0 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|294496578|ref|YP_003543071.1| - 0.12 12.2 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|294496578|ref|YP_003543071.1| - 0.18 11.9 0.0 0.43 10.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase PRA-CH PF01502.13 gi|294496579|ref|YP_003543072.1| - 4.9e-37 125.4 0.2 6e-37 125.1 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase PepSY PF03413.14 gi|294496580|ref|YP_003543073.1| - 0.0025 18.4 0.5 0.047 14.3 0.0 3.1 3 2 0 3 3 3 1 Peptidase propeptide and YPEB domain Mrr_cat PF04471.7 gi|294496580|ref|YP_003543073.1| - 0.012 15.4 0.1 0.044 13.5 0.1 2.0 1 1 0 1 1 1 0 Restriction endonuclease Fe-S_biosyn PF01521.15 gi|294496581|ref|YP_003543074.1| - 1e-11 44.7 0.1 1.2e-11 44.5 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Pyr_redox PF00070.22 gi|294496581|ref|YP_003543074.1| - 0.044 14.1 0.0 0.063 13.6 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAC PF01849.13 gi|294496582|ref|YP_003543075.1| - 3.7e-19 67.9 2.1 3.7e-19 67.9 1.5 1.5 2 0 0 2 2 2 1 NAC domain UBA PF00627.26 gi|294496582|ref|YP_003543075.1| - 7.9e-08 31.9 3.7 6.5e-07 29.0 0.1 3.0 3 0 0 3 3 3 1 UBA/TS-N domain UBA_4 PF14555.1 gi|294496582|ref|YP_003543075.1| - 0.00033 20.1 0.1 0.001 18.5 0.0 1.8 2 0 0 2 2 2 1 UBA-like domain Sigma70_r3 PF04539.11 gi|294496582|ref|YP_003543075.1| - 0.0019 18.0 4.5 0.0075 16.1 0.3 3.1 2 2 2 4 4 4 1 Sigma-70 region 3 Death PF00531.17 gi|294496582|ref|YP_003543075.1| - 0.0024 17.6 0.0 1.9 8.3 0.0 2.2 2 0 0 2 2 2 2 Death domain DUF3867 PF12983.2 gi|294496582|ref|YP_003543075.1| - 0.013 15.5 0.4 0.015 15.2 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3867) RTC4 PF14474.1 gi|294496582|ref|YP_003543075.1| - 0.05 13.5 0.2 0.092 12.6 0.1 1.6 1 1 0 1 1 1 0 RTC4-like domain PspA_IM30 PF04012.7 gi|294496582|ref|YP_003543075.1| - 0.094 12.0 0.3 0.094 12.0 0.2 1.4 2 0 0 2 2 2 0 PspA/IM30 family PTS_IIB PF02302.12 gi|294496582|ref|YP_003543075.1| - 1.4 9.4 4.3 10 6.7 3.0 2.0 1 1 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIB subunit VirionAssem_T7 PF11653.3 gi|294496582|ref|YP_003543075.1| - 1.8 9.3 4.7 4.7 8.0 3.3 1.7 1 1 0 1 1 1 0 Bacteriophage T7 virion assembly protein Pyr_redox_2 PF07992.9 gi|294496583|ref|YP_003543076.1| - 7.2e-26 91.3 0.0 1.8e-25 90.0 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|294496583|ref|YP_003543076.1| - 6.8e-19 67.9 0.1 2e-18 66.4 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|294496583|ref|YP_003543076.1| - 1.3e-13 51.1 0.1 3e-13 49.9 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|294496583|ref|YP_003543076.1| - 0.00073 19.8 0.0 0.0067 16.7 0.0 2.1 2 0 0 2 2 2 1 XdhC Rossmann domain NAD_binding_7 PF13241.1 gi|294496583|ref|YP_003543076.1| - 0.013 15.7 0.0 0.066 13.4 0.0 2.3 1 1 1 2 2 2 0 Putative NAD(P)-binding K_oxygenase PF13434.1 gi|294496583|ref|YP_003543076.1| - 0.015 14.2 0.0 0.69 8.7 0.0 2.7 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.12 gi|294496583|ref|YP_003543076.1| - 0.073 12.1 0.3 0.24 10.4 0.0 2.0 2 0 0 2 2 2 0 Thi4 family ApbA PF02558.11 gi|294496583|ref|YP_003543076.1| - 0.098 12.0 0.1 0.83 9.0 0.1 2.6 3 1 0 3 3 3 0 Ketopantoate reductase PanE/ApbA DAO PF01266.19 gi|294496583|ref|YP_003543076.1| - 0.39 9.5 1.4 13 4.6 0.0 2.6 3 0 0 3 3 3 0 FAD dependent oxidoreductase HMGL-like PF00682.14 gi|294496585|ref|YP_003543078.1| - 3.2e-65 220.0 2.8 3.2e-65 220.0 2.0 1.6 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|294496585|ref|YP_003543078.1| - 1.9e-30 105.3 1.6 3.4e-30 104.5 1.1 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain SpoVIF PF14069.1 gi|294496585|ref|YP_003543078.1| - 0.0032 17.1 0.0 3.8 7.3 0.0 2.9 3 0 0 3 3 3 2 Stage VI sporulation protein F ABC_tran PF00005.22 gi|294496586|ref|YP_003543079.1| - 3.3e-33 114.8 0.0 4.6e-33 114.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|294496586|ref|YP_003543079.1| - 1.1e-09 38.6 0.0 0.00011 22.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|294496586|ref|YP_003543079.1| - 9.9e-08 31.4 0.0 0.0018 17.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|294496586|ref|YP_003543079.1| - 6.3e-07 28.8 0.0 1.4e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|294496586|ref|YP_003543079.1| - 7.2e-07 29.7 0.1 9.5e-07 29.3 0.1 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|294496586|ref|YP_003543079.1| - 4e-06 26.2 1.2 6.3e-05 22.3 0.9 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|294496586|ref|YP_003543079.1| - 0.00012 22.1 1.1 0.0033 17.5 0.8 2.3 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|294496586|ref|YP_003543079.1| - 0.0013 17.4 0.6 1.5 7.3 0.1 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class NB-ARC PF00931.17 gi|294496586|ref|YP_003543079.1| - 0.0021 16.9 0.7 0.024 13.4 0.0 2.0 2 0 0 2 2 2 1 NB-ARC domain AAA_14 PF13173.1 gi|294496586|ref|YP_003543079.1| - 0.003 17.4 0.0 0.26 11.1 0.0 2.9 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|294496586|ref|YP_003543079.1| - 0.0043 16.2 0.0 0.0065 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|294496586|ref|YP_003543079.1| - 0.0063 16.5 0.0 0.01 15.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|294496586|ref|YP_003543079.1| - 0.011 14.9 0.0 0.031 13.4 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|294496586|ref|YP_003543079.1| - 0.023 15.5 0.1 0.1 13.3 0.1 2.0 1 1 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|294496586|ref|YP_003543079.1| - 0.025 13.9 0.0 0.053 12.9 0.0 1.5 2 0 0 2 2 2 0 MutS domain V AAA_33 PF13671.1 gi|294496586|ref|YP_003543079.1| - 0.026 14.4 0.2 0.13 12.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|294496586|ref|YP_003543079.1| - 0.032 13.0 0.0 0.061 12.1 0.0 1.4 1 0 0 1 1 1 0 ArgK protein Rad17 PF03215.10 gi|294496586|ref|YP_003543079.1| - 0.04 12.6 0.0 0.057 12.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein MobB PF03205.9 gi|294496586|ref|YP_003543079.1| - 0.054 13.2 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA12 PF10443.4 gi|294496586|ref|YP_003543079.1| - 0.057 11.9 0.1 0.14 10.5 0.0 1.6 2 0 0 2 2 2 0 RNA12 protein AAA_10 PF12846.2 gi|294496586|ref|YP_003543079.1| - 0.058 12.8 0.2 0.13 11.7 0.1 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_30 PF13604.1 gi|294496586|ref|YP_003543079.1| - 0.058 12.9 0.0 0.16 11.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain Spore_IV_A PF09547.5 gi|294496586|ref|YP_003543079.1| - 0.06 12.0 0.0 0.098 11.3 0.0 1.4 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) AAA_25 PF13481.1 gi|294496586|ref|YP_003543079.1| - 0.073 12.4 0.1 0.93 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF2027 PF09640.5 gi|294496586|ref|YP_003543079.1| - 0.093 12.0 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2027) AAA_5 PF07728.9 gi|294496586|ref|YP_003543079.1| - 0.1 12.3 0.0 6.4 6.5 0.0 2.7 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|294496586|ref|YP_003543079.1| - 0.14 11.2 0.0 0.25 10.4 0.0 1.5 2 0 0 2 2 1 0 Zeta toxin SbcCD_C PF13558.1 gi|294496586|ref|YP_003543079.1| - 0.15 12.0 0.1 1.3 8.9 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|294496586|ref|YP_003543079.1| - 0.16 12.3 0.2 0.72 10.1 0.0 2.1 1 1 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|294496586|ref|YP_003543079.1| - 0.16 10.4 0.1 1.5 7.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain FecCD PF01032.13 gi|294496587|ref|YP_003543080.1| - 1.1e-89 300.4 34.8 1.3e-89 300.0 24.1 1.1 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.13 gi|294496588|ref|YP_003543081.1| - 2.6e-50 170.8 0.0 3.9e-50 170.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Acid_PPase PF12689.2 gi|294496588|ref|YP_003543081.1| - 0.063 12.9 0.0 0.13 11.8 0.0 1.5 1 1 0 1 1 1 0 Acid Phosphatase Methyltransf_18 PF12847.2 gi|294496590|ref|YP_003543083.1| - 2.1e-12 47.5 0.0 4.5e-12 46.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|294496590|ref|YP_003543083.1| - 1.9e-09 37.2 0.0 6.7e-09 35.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|294496590|ref|YP_003543083.1| - 2.1e-08 34.5 0.2 1.6e-07 31.7 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.15 gi|294496590|ref|YP_003543083.1| - 8.5e-08 31.5 0.0 1.4e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.1 gi|294496590|ref|YP_003543083.1| - 2.1e-07 30.8 0.0 5.2e-07 29.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|294496590|ref|YP_003543083.1| - 3.8e-06 27.2 0.1 2.2e-05 24.8 0.0 2.2 3 0 0 3 3 3 1 Methyltransferase domain MTS PF05175.9 gi|294496590|ref|YP_003543083.1| - 1.5e-05 24.4 0.0 2.9e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|294496590|ref|YP_003543083.1| - 1.5e-05 25.2 0.0 2.8e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|294496590|ref|YP_003543083.1| - 2.2e-05 23.6 0.0 3.4e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G CMAS PF02353.15 gi|294496590|ref|YP_003543083.1| - 0.00011 21.4 0.0 0.0003 19.9 0.0 1.7 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase tRNA_U5-meth_tr PF05958.6 gi|294496590|ref|YP_003543083.1| - 0.00055 18.7 0.0 0.00087 18.0 0.0 1.3 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Ubie_methyltran PF01209.13 gi|294496590|ref|YP_003543083.1| - 0.0012 18.0 0.0 0.0021 17.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|294496590|ref|YP_003543083.1| - 0.0013 18.3 0.0 0.002 17.6 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.10 gi|294496590|ref|YP_003543083.1| - 0.0017 17.8 0.0 0.0027 17.1 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_16 PF10294.4 gi|294496590|ref|YP_003543083.1| - 0.0029 17.0 0.0 0.0049 16.3 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_15 PF09445.5 gi|294496590|ref|YP_003543083.1| - 0.0034 16.9 0.0 0.0062 16.1 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_26 PF13659.1 gi|294496590|ref|YP_003543083.1| - 0.0054 16.7 0.0 0.0084 16.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|294496590|ref|YP_003543083.1| - 0.0059 15.5 0.0 0.0095 14.8 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase Met_10 PF02475.11 gi|294496590|ref|YP_003543083.1| - 0.017 14.7 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_4 PF02390.12 gi|294496590|ref|YP_003543083.1| - 0.026 13.5 0.0 0.043 12.8 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase PrmA PF06325.8 gi|294496590|ref|YP_003543083.1| - 0.036 13.1 0.0 0.071 12.2 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MAF_flag10 PF01973.13 gi|294496590|ref|YP_003543083.1| - 0.044 13.2 0.0 0.09 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF115 DUF938 PF06080.7 gi|294496590|ref|YP_003543083.1| - 0.13 11.8 0.0 0.28 10.6 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF938) S-layer PF07752.6 gi|294496591|ref|YP_003543084.1| - 1.8e-65 220.7 10.6 2.7e-65 220.1 7.4 1.3 1 0 0 1 1 1 1 S-layer protein TatD_DNase PF01026.16 gi|294496592|ref|YP_003543085.1| - 4e-60 203.1 0.2 4.5e-60 202.9 0.1 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_4 PF13147.1 gi|294496592|ref|YP_003543085.1| - 0.13 12.2 0.0 0.24 11.4 0.0 1.6 1 1 0 1 1 1 0 Amidohydrolase Amidohydro_5 PF13594.1 gi|294496592|ref|YP_003543085.1| - 0.17 11.7 1.0 0.38 10.5 0.0 2.1 3 0 0 3 3 3 0 Amidohydrolase Lactamase_B PF00753.22 gi|294496593|ref|YP_003543086.1| - 3e-31 108.5 0.5 3.4e-31 108.4 0.4 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|294496593|ref|YP_003543086.1| - 9e-08 31.8 0.0 1.5e-07 31.1 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|294496593|ref|YP_003543086.1| - 0.064 12.9 0.1 0.1 12.3 0.0 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Radical_SAM_N PF08497.5 gi|294496594|ref|YP_003543087.1| - 2e-130 434.1 0.0 2.7e-130 433.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM N-terminal Radical_SAM PF04055.16 gi|294496594|ref|YP_003543087.1| - 2.4e-20 73.3 0.6 1.5e-17 64.3 0.1 3.2 2 1 1 3 3 3 2 Radical SAM superfamily DUF3362 PF11842.3 gi|294496594|ref|YP_003543087.1| - 6e-14 52.2 0.0 1.1e-13 51.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) B12-binding PF02310.14 gi|294496594|ref|YP_003543087.1| - 0.011 15.6 0.0 0.077 12.8 0.0 2.4 2 0 0 2 2 2 0 B12 binding domain Response_reg PF00072.19 gi|294496595|ref|YP_003543088.1| - 7.3e-18 64.6 2.0 1.1e-17 64.0 0.6 2.0 2 0 0 2 2 2 1 Response regulator receiver domain HisKA PF00512.20 gi|294496595|ref|YP_003543088.1| - 7.6e-11 41.8 0.2 4.2e-10 39.4 0.0 2.3 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|294496595|ref|YP_003543088.1| - 1.1e-10 41.5 0.0 6.2e-10 39.1 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|294496595|ref|YP_003543088.1| - 1.1e-10 41.7 0.1 3.8e-10 40.0 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|294496595|ref|YP_003543088.1| - 2.9e-09 36.6 0.0 7.4e-09 35.3 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.6 gi|294496595|ref|YP_003543088.1| - 0.00044 20.2 0.1 0.0013 18.8 0.0 1.8 1 1 1 2 2 2 1 PAS fold HATPase_c PF02518.21 gi|294496595|ref|YP_003543088.1| - 0.0037 16.9 0.0 0.026 14.2 0.0 2.4 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|294496595|ref|YP_003543088.1| - 0.0077 16.0 0.0 0.042 13.7 0.0 2.2 2 0 0 2 2 2 1 PAS domain CCG PF02754.11 gi|294496596|ref|YP_003543089.1| - 6.7e-34 115.7 2.1 1.3e-16 60.3 0.1 2.8 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|294496596|ref|YP_003543089.1| - 5.5e-11 42.3 5.4 5.5e-11 42.3 3.7 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|294496596|ref|YP_003543089.1| - 5.6e-10 39.4 5.0 5.6e-10 39.4 3.5 3.4 4 1 0 4 4 4 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294496596|ref|YP_003543089.1| - 2.4e-09 37.4 6.1 2.4e-09 37.4 4.3 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|294496596|ref|YP_003543089.1| - 5.2e-07 29.3 21.3 5.9e-06 25.9 7.5 2.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|294496596|ref|YP_003543089.1| - 2.9e-06 26.6 18.5 6.6e-05 22.3 0.4 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|294496596|ref|YP_003543089.1| - 1e-05 25.1 17.9 0.001 18.8 0.9 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|294496596|ref|YP_003543089.1| - 1.2e-05 25.4 9.7 1.2e-05 25.4 6.8 3.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|294496596|ref|YP_003543089.1| - 0.00017 22.2 12.1 0.0011 19.6 1.0 3.2 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|294496596|ref|YP_003543089.1| - 0.00051 19.8 12.9 0.021 14.6 0.2 3.9 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294496596|ref|YP_003543089.1| - 0.0035 17.5 1.2 0.0035 17.5 0.8 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|294496596|ref|YP_003543089.1| - 0.028 14.7 12.9 0.49 10.8 0.2 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|294496596|ref|YP_003543089.1| - 3.4 8.3 13.8 1.7 9.2 1.7 3.2 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|294496596|ref|YP_003543089.1| - 5.3 7.5 24.7 0.42 11.0 1.5 4.0 4 1 1 5 5 5 0 4Fe-4S dicluster domain FAD-oxidase_C PF02913.14 gi|294496597|ref|YP_003543090.1| - 4.6e-55 186.6 0.0 6e-55 186.2 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|294496597|ref|YP_003543090.1| - 3.1e-41 140.1 0.1 6.5e-41 139.0 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain TGT PF01702.13 gi|294496598|ref|YP_003543091.1| - 1.1e-19 70.6 0.5 5.5e-19 68.3 0.1 2.1 2 1 0 2 2 2 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.1 gi|294496598|ref|YP_003543091.1| - 9.8e-15 54.1 0.0 2.4e-14 52.9 0.0 1.7 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|294496598|ref|YP_003543091.1| - 1.6e-14 53.4 0.4 1.1e-13 50.7 0.0 2.2 2 0 0 2 2 2 1 PUA domain Acetyltransf_1 PF00583.19 gi|294496599|ref|YP_003543092.1| - 1.1e-17 63.8 0.2 1.6e-17 63.2 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|294496599|ref|YP_003543092.1| - 2.2e-12 46.9 0.2 3.3e-12 46.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|294496599|ref|YP_003543092.1| - 4.3e-12 46.1 0.0 5.3e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|294496599|ref|YP_003543092.1| - 5.3e-11 42.1 0.0 8.2e-11 41.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|294496599|ref|YP_003543092.1| - 7.8e-08 32.3 0.1 1e-07 31.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|294496599|ref|YP_003543092.1| - 1.6e-06 28.3 0.0 2e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|294496599|ref|YP_003543092.1| - 2.3e-05 24.3 0.1 3.1e-05 23.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|294496599|ref|YP_003543092.1| - 3.5e-05 23.6 0.0 9.3e-05 22.2 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|294496599|ref|YP_003543092.1| - 0.0068 15.7 0.0 0.0078 15.5 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase 2 Acetyltransf_CG PF14542.1 gi|294496599|ref|YP_003543092.1| - 0.009 15.8 0.0 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|294496599|ref|YP_003543092.1| - 0.0092 15.5 0.1 0.014 15.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain UPF0058 PF01893.11 gi|294496600|ref|YP_003543093.1| - 7.7e-33 112.4 1.7 8.5e-33 112.2 1.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 CTP_transf_1 PF01148.15 gi|294496601|ref|YP_003543094.1| - 3.1e-05 23.7 11.0 0.0071 16.0 5.5 2.1 1 1 1 2 2 2 2 Cytidylyltransferase family Aconitase_C PF00694.14 gi|294496602|ref|YP_003543095.1| - 7.3e-19 68.1 0.1 1.3e-18 67.3 0.0 1.6 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|294496602|ref|YP_003543095.1| - 0.0022 17.4 0.1 0.042 13.2 0.1 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Iso_dh PF00180.15 gi|294496603|ref|YP_003543096.1| - 3.8e-94 315.4 0.0 4.4e-94 315.2 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Radical_SAM PF04055.16 gi|294496604|ref|YP_003543097.1| - 5.2e-24 85.2 0.9 6.9e-23 81.6 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|294496604|ref|YP_003543097.1| - 9.5e-10 38.5 1.0 1.5e-08 34.7 0.0 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|294496604|ref|YP_003543097.1| - 4.4e-08 33.3 1.7 2.5e-07 30.9 0.0 2.6 1 1 1 2 2 2 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.19 gi|294496604|ref|YP_003543097.1| - 0.033 13.4 0.0 0.062 12.5 0.0 1.4 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Cys_rich_KTR PF14205.1 gi|294496604|ref|YP_003543097.1| - 1.1 8.7 8.2 4.1 6.9 0.1 4.1 4 0 0 4 4 4 0 Cysteine-rich KTR DUF128 PF01995.11 gi|294496605|ref|YP_003543098.1| - 3.8e-80 268.2 0.2 4.6e-80 267.9 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF128 HTH_12 PF08461.5 gi|294496605|ref|YP_003543098.1| - 8.6e-30 102.2 1.6 1.5e-29 101.5 1.1 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Ribosomal_S19e PF01090.14 gi|294496605|ref|YP_003543098.1| - 0.038 13.4 0.0 0.068 12.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e HTH_21 PF13276.1 gi|294496605|ref|YP_003543098.1| - 0.047 13.7 0.8 0.1 12.6 0.5 1.5 1 0 0 1 1 1 0 HTH-like domain ABC1 PF03109.11 gi|294496606|ref|YP_003543099.1| - 4.6e-38 129.8 0.0 1.1e-37 128.6 0.0 1.7 1 0 0 1 1 1 1 ABC1 family Pkinase PF00069.20 gi|294496606|ref|YP_003543099.1| - 4.8e-06 25.9 0.4 4.8e-06 25.9 0.3 1.9 3 0 0 3 3 3 1 Protein kinase domain APH PF01636.18 gi|294496606|ref|YP_003543099.1| - 8.2e-06 25.7 0.0 4.6e-05 23.2 0.0 2.0 2 1 0 2 2 2 1 Phosphotransferase enzyme family RIO1 PF01163.17 gi|294496606|ref|YP_003543099.1| - 0.00042 19.7 0.4 0.0012 18.1 0.0 1.9 3 0 0 3 3 3 1 RIO1 family WaaY PF06176.6 gi|294496606|ref|YP_003543099.1| - 0.0006 19.1 0.1 0.0011 18.1 0.1 1.5 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Choline_kinase PF01633.15 gi|294496606|ref|YP_003543099.1| - 0.0048 16.4 0.1 0.21 11.1 0.0 2.5 2 1 0 2 2 2 1 Choline/ethanolamine kinase Pkinase_Tyr PF07714.12 gi|294496606|ref|YP_003543099.1| - 0.011 14.8 0.1 0.031 13.3 0.1 1.7 1 1 0 1 1 1 0 Protein tyrosine kinase TIR-like PF10137.4 gi|294496606|ref|YP_003543099.1| - 0.1 12.2 0.1 0.29 10.7 0.0 1.9 1 1 0 1 1 1 0 Predicted nucleotide-binding protein containing TIR-like domain Phasin PF05597.6 gi|294496607|ref|YP_003543100.1| - 2.6e-08 33.6 8.3 7.6e-07 28.9 5.8 2.0 1 1 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) PRESAN PF09687.5 gi|294496607|ref|YP_003543100.1| - 0.00045 20.2 3.3 0.00063 19.8 2.3 1.1 1 0 0 1 1 1 1 Plasmodium RESA N-terminal NAGLU_C PF12972.2 gi|294496607|ref|YP_003543100.1| - 0.0039 16.6 0.7 0.0049 16.2 0.5 1.1 1 0 0 1 1 1 1 Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain DUF1476 PF07345.6 gi|294496607|ref|YP_003543100.1| - 0.0086 16.3 0.2 0.015 15.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1476) PhoU PF01895.14 gi|294496607|ref|YP_003543100.1| - 0.023 15.1 1.4 0.023 15.1 0.9 1.8 1 1 1 2 2 2 0 PhoU domain Effector_1 PF04518.7 gi|294496607|ref|YP_003543100.1| - 0.025 13.5 1.5 0.025 13.5 1.1 1.0 1 0 0 1 1 1 0 Effector from type III secretion system RasGAP PF00616.14 gi|294496607|ref|YP_003543100.1| - 0.027 14.1 0.7 0.032 13.8 0.5 1.1 1 0 0 1 1 1 0 GTPase-activator protein for Ras-like GTPase HTH_24 PF13412.1 gi|294496607|ref|YP_003543100.1| - 0.03 13.7 0.1 6.7 6.1 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Tektin PF03148.9 gi|294496607|ref|YP_003543100.1| - 0.033 12.7 5.1 0.041 12.4 3.5 1.0 1 0 0 1 1 1 0 Tektin family DUF3731 PF12531.3 gi|294496607|ref|YP_003543100.1| - 0.059 12.8 0.8 0.072 12.6 0.5 1.0 1 0 0 1 1 1 0 DNA-K related protein RRF PF01765.14 gi|294496607|ref|YP_003543100.1| - 0.061 12.7 5.1 0.086 12.3 3.5 1.2 1 0 0 1 1 1 0 Ribosome recycling factor Raftlin PF15250.1 gi|294496607|ref|YP_003543100.1| - 0.072 11.6 2.1 0.08 11.4 1.5 1.0 1 0 0 1 1 1 0 Raftlin OS-D PF03392.8 gi|294496607|ref|YP_003543100.1| - 0.087 12.8 0.6 0.1 12.5 0.4 1.1 1 0 0 1 1 1 0 Insect pheromone-binding family, A10/OS-D Rgp1 PF08737.5 gi|294496607|ref|YP_003543100.1| - 0.11 11.5 2.1 0.13 11.2 1.4 1.1 1 0 0 1 1 1 0 Rgp1 BMFP PF04380.8 gi|294496607|ref|YP_003543100.1| - 0.12 12.5 5.2 2 8.6 3.6 2.3 1 1 0 1 1 1 0 Membrane fusogenic activity DUF3150 PF11348.3 gi|294496607|ref|YP_003543100.1| - 0.12 11.4 4.3 0.82 8.7 1.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3150) TrmB PF01978.14 gi|294496607|ref|YP_003543100.1| - 0.14 11.8 1.4 0.88 9.3 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB KorB PF08535.5 gi|294496607|ref|YP_003543100.1| - 0.18 11.9 2.4 0.6 10.3 1.7 1.7 1 1 0 1 1 1 0 KorB domain DUF241 PF03087.9 gi|294496607|ref|YP_003543100.1| - 0.24 10.8 6.9 0.28 10.6 4.8 1.1 1 0 0 1 1 1 0 Arabidopsis protein of unknown function HD_4 PF13328.1 gi|294496607|ref|YP_003543100.1| - 0.27 10.9 1.6 0.38 10.4 1.1 1.2 1 0 0 1 1 1 0 HD domain ACCA PF03255.9 gi|294496607|ref|YP_003543100.1| - 0.29 10.6 4.5 0.34 10.4 2.6 1.5 1 1 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit MerR-DNA-bind PF09278.6 gi|294496607|ref|YP_003543100.1| - 0.32 11.4 2.3 0.4 11.1 0.6 1.9 1 1 1 2 2 2 0 MerR, DNA binding TAFH PF07531.9 gi|294496607|ref|YP_003543100.1| - 0.4 10.3 4.5 1.4 8.6 1.5 2.1 1 1 1 2 2 2 0 NHR1 homology to TAF Terminase_2 PF03592.11 gi|294496607|ref|YP_003543100.1| - 0.43 10.8 7.5 0.5 10.6 5.2 1.1 1 0 0 1 1 1 0 Terminase small subunit Peptidase_M41 PF01434.13 gi|294496607|ref|YP_003543100.1| - 0.46 9.9 5.3 0.68 9.3 3.3 1.4 1 1 0 1 1 1 0 Peptidase family M41 YtxH PF12732.2 gi|294496607|ref|YP_003543100.1| - 0.65 10.3 8.8 0.82 10.0 5.3 1.8 1 1 0 1 1 1 0 YtxH-like protein Med9 PF07544.8 gi|294496607|ref|YP_003543100.1| - 0.97 9.2 6.3 7.7 6.3 4.5 2.0 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 ParB PF08775.5 gi|294496607|ref|YP_003543100.1| - 1.6 9.0 7.3 1.7 8.9 2.0 2.0 1 1 1 2 2 2 0 ParB family IncA PF04156.9 gi|294496607|ref|YP_003543100.1| - 2.9 7.4 5.9 1.9 8.0 2.9 1.5 1 1 0 1 1 1 0 IncA protein ABC_tran PF00005.22 gi|294496608|ref|YP_003543101.1| - 6.3e-58 194.9 0.0 1.9e-27 96.2 0.0 2.6 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|294496608|ref|YP_003543101.1| - 2.9e-18 66.8 3.0 3.4e-05 23.9 1.6 4.2 3 1 0 3 3 3 3 AAA domain AAA_17 PF13207.1 gi|294496608|ref|YP_003543101.1| - 2.9e-09 37.7 0.0 0.0026 18.5 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_29 PF13555.1 gi|294496608|ref|YP_003543101.1| - 1.5e-08 34.0 2.3 0.0035 16.8 0.4 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain DUF258 PF03193.11 gi|294496608|ref|YP_003543101.1| - 1.9e-08 33.6 0.3 0.0028 16.8 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|294496608|ref|YP_003543101.1| - 4.6e-08 33.2 1.3 0.00045 20.2 0.0 2.8 2 2 0 2 2 2 2 AAA ATPase domain AAA_15 PF13175.1 gi|294496608|ref|YP_003543101.1| - 7.7e-08 31.7 1.8 0.16 11.0 0.1 4.1 4 0 0 4 4 4 2 AAA ATPase domain AAA_18 PF13238.1 gi|294496608|ref|YP_003543101.1| - 8.8e-08 32.5 0.6 0.016 15.4 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|294496608|ref|YP_003543101.1| - 1.6e-07 31.5 2.0 0.0069 16.5 0.0 3.6 4 0 0 4 4 3 2 AAA domain AAA_23 PF13476.1 gi|294496608|ref|YP_003543101.1| - 3.2e-07 30.8 0.2 0.023 15.0 0.5 2.3 2 0 0 2 2 2 2 AAA domain MobB PF03205.9 gi|294496608|ref|YP_003543101.1| - 3.5e-07 29.9 0.0 0.0041 16.8 0.0 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|294496608|ref|YP_003543101.1| - 1.9e-06 26.8 0.7 0.0014 17.4 0.1 2.3 2 0 0 2 2 2 2 ArgK protein T2SE PF00437.15 gi|294496608|ref|YP_003543101.1| - 5.7e-06 25.4 0.2 0.037 12.9 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_30 PF13604.1 gi|294496608|ref|YP_003543101.1| - 1.6e-05 24.6 0.1 0.068 12.7 0.0 2.7 3 0 0 3 3 2 2 AAA domain Rad17 PF03215.10 gi|294496608|ref|YP_003543101.1| - 2.8e-05 22.9 0.1 0.13 10.9 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein PRK PF00485.13 gi|294496608|ref|YP_003543101.1| - 3.2e-05 23.5 0.0 0.12 11.9 0.1 2.3 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.1 gi|294496608|ref|YP_003543101.1| - 3.4e-05 23.7 0.0 0.012 15.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|294496608|ref|YP_003543101.1| - 3.5e-05 23.4 1.2 0.058 13.1 0.0 3.4 4 0 0 4 4 2 1 Part of AAA domain SbcCD_C PF13558.1 gi|294496608|ref|YP_003543101.1| - 4.4e-05 23.3 1.1 0.032 14.1 0.1 3.5 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|294496608|ref|YP_003543101.1| - 6e-05 22.3 0.1 1.8 7.7 0.0 3.7 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|294496608|ref|YP_003543101.1| - 9.5e-05 21.8 0.0 0.11 11.9 0.0 3.4 4 0 0 4 4 4 1 AAA domain AAA_14 PF13173.1 gi|294496608|ref|YP_003543101.1| - 0.0001 22.1 0.1 0.093 12.6 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|294496608|ref|YP_003543101.1| - 0.00015 21.3 0.4 0.23 10.8 0.0 3.3 3 0 0 3 3 3 1 AAA-like domain Arch_ATPase PF01637.13 gi|294496608|ref|YP_003543101.1| - 0.00018 21.2 0.1 0.0037 16.9 0.0 2.4 2 0 0 2 2 2 1 Archaeal ATPase Mg_chelatase PF01078.16 gi|294496608|ref|YP_003543101.1| - 0.0004 19.5 0.1 0.051 12.7 0.0 2.9 3 0 0 3 3 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|294496608|ref|YP_003543101.1| - 0.00056 20.1 0.0 0.32 11.1 0.0 3.6 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|294496608|ref|YP_003543101.1| - 0.00095 18.9 1.1 0.59 9.8 0.1 2.7 3 0 0 3 3 2 1 NTPase NB-ARC PF00931.17 gi|294496608|ref|YP_003543101.1| - 0.00099 18.0 0.1 1 8.1 0.1 2.3 2 0 0 2 2 2 2 NB-ARC domain NACHT PF05729.7 gi|294496608|ref|YP_003543101.1| - 0.0011 18.6 2.6 0.04 13.5 0.0 2.5 2 0 0 2 2 2 1 NACHT domain AAA_5 PF07728.9 gi|294496608|ref|YP_003543101.1| - 0.0012 18.5 0.2 0.049 13.3 0.0 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|294496608|ref|YP_003543101.1| - 0.0014 18.6 0.0 0.29 11.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain Miro PF08477.8 gi|294496608|ref|YP_003543101.1| - 0.0018 18.7 0.0 2.2 8.8 0.0 2.7 2 0 0 2 2 2 1 Miro-like protein UPF0079 PF02367.12 gi|294496608|ref|YP_003543101.1| - 0.0021 17.7 1.0 0.097 12.3 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 APS_kinase PF01583.15 gi|294496608|ref|YP_003543101.1| - 0.0021 17.7 0.2 2.1 7.9 0.1 2.6 2 0 0 2 2 2 1 Adenylylsulphate kinase KAP_NTPase PF07693.9 gi|294496608|ref|YP_003543101.1| - 0.0023 17.0 0.0 0.41 9.5 0.0 2.2 2 0 0 2 2 2 1 KAP family P-loop domain cobW PF02492.14 gi|294496608|ref|YP_003543101.1| - 0.0061 16.0 3.1 0.23 10.8 0.2 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.4 gi|294496608|ref|YP_003543101.1| - 0.0081 15.6 0.9 0.53 9.7 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|294496608|ref|YP_003543101.1| - 0.011 15.7 0.1 5.1 7.0 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_PrkA PF08298.6 gi|294496608|ref|YP_003543101.1| - 0.012 14.3 0.1 0.059 12.0 0.0 1.9 2 0 0 2 2 2 0 PrkA AAA domain ATP-synt_ab PF00006.20 gi|294496608|ref|YP_003543101.1| - 0.016 14.7 0.1 4.2 6.8 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Zeta_toxin PF06414.7 gi|294496608|ref|YP_003543101.1| - 0.018 14.1 0.1 5.3 6.0 0.0 2.5 2 0 0 2 2 2 0 Zeta toxin PhoH PF02562.11 gi|294496608|ref|YP_003543101.1| - 0.033 13.4 0.1 4.2 6.5 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein RNA_helicase PF00910.17 gi|294496608|ref|YP_003543101.1| - 0.036 14.2 0.2 4.9 7.3 0.0 2.5 2 0 0 2 2 2 0 RNA helicase PIF1 PF05970.9 gi|294496608|ref|YP_003543101.1| - 0.055 12.4 0.4 6.1 5.6 0.0 2.8 3 0 0 3 3 3 0 PIF1-like helicase Dynamin_N PF00350.18 gi|294496608|ref|YP_003543101.1| - 0.067 13.0 2.1 1.3 8.8 0.1 2.6 3 0 0 3 3 2 0 Dynamin family Thymidylate_kin PF02223.12 gi|294496608|ref|YP_003543101.1| - 0.083 12.2 0.3 1.5 8.1 0.0 2.6 2 1 0 3 3 3 0 Thymidylate kinase DUF3987 PF13148.1 gi|294496608|ref|YP_003543101.1| - 0.085 11.4 0.0 8.3 4.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) CoaE PF01121.15 gi|294496608|ref|YP_003543101.1| - 0.095 12.0 1.0 0.99 8.7 0.2 2.4 2 0 0 2 2 2 0 Dephospho-CoA kinase CbiA PF01656.18 gi|294496608|ref|YP_003543101.1| - 0.1 12.0 1.3 3.3 7.0 0.0 2.4 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain ATP_bind_1 PF03029.12 gi|294496608|ref|YP_003543101.1| - 0.11 11.9 0.4 3 7.3 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein G-alpha PF00503.15 gi|294496608|ref|YP_003543101.1| - 0.13 10.9 0.1 2.6 6.6 0.0 2.1 2 0 0 2 2 2 0 G-protein alpha subunit Pox_A32 PF04665.7 gi|294496608|ref|YP_003543101.1| - 0.16 11.2 1.5 2.4 7.3 0.0 2.2 2 0 0 2 2 2 0 Poxvirus A32 protein DUF87 PF01935.12 gi|294496608|ref|YP_003543101.1| - 0.27 11.0 3.5 11 5.7 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_24 PF13479.1 gi|294496608|ref|YP_003543101.1| - 0.35 10.4 3.8 2.7 7.5 0.0 2.9 3 0 0 3 3 3 0 AAA domain PcrB PF01884.12 gi|294496609|ref|YP_003543102.1| - 3.8e-80 268.4 0.3 4.5e-80 268.2 0.2 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|294496609|ref|YP_003543102.1| - 6.6e-05 22.2 0.2 0.00014 21.2 0.1 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein Ribul_P_3_epim PF00834.14 gi|294496609|ref|YP_003543102.1| - 0.0017 17.4 0.4 0.0029 16.7 0.3 1.3 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family IMPDH PF00478.20 gi|294496609|ref|YP_003543102.1| - 0.045 12.6 1.0 0.26 10.1 0.1 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Trp_syntA PF00290.15 gi|294496609|ref|YP_003543102.1| - 0.062 11.8 0.7 0.54 8.7 0.1 2.2 2 0 0 2 2 2 0 Tryptophan synthase alpha chain ThiG PF05690.9 gi|294496609|ref|YP_003543102.1| - 0.065 12.3 8.4 2.2 7.3 2.8 2.4 2 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|294496609|ref|YP_003543102.1| - 0.13 11.2 0.0 0.2 10.6 0.0 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase Ribosomal_L40e PF01020.12 gi|294496610|ref|YP_003543103.1| - 1.8e-05 24.1 8.5 2.1e-05 24.0 5.9 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zf-ribbon_3 PF13248.1 gi|294496610|ref|YP_003543103.1| - 0.00043 19.3 2.7 0.00055 19.0 1.9 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|294496610|ref|YP_003543103.1| - 0.00063 19.1 0.6 0.00086 18.7 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|294496610|ref|YP_003543103.1| - 0.0031 17.2 1.0 0.0036 17.0 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-DHHC PF01529.15 gi|294496610|ref|YP_003543103.1| - 0.017 14.5 1.4 0.019 14.4 1.0 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase zf-ZPR1 PF03367.8 gi|294496610|ref|YP_003543103.1| - 0.05 12.7 2.8 0.054 12.6 0.1 1.9 1 1 1 2 2 2 0 ZPR1 zinc-finger domain FYVE PF01363.16 gi|294496610|ref|YP_003543103.1| - 0.072 12.9 1.8 0.079 12.8 1.2 1.2 1 0 0 1 1 1 0 FYVE zinc finger OrfB_Zn_ribbon PF07282.6 gi|294496610|ref|YP_003543103.1| - 0.075 12.7 1.5 0.087 12.4 1.1 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|294496610|ref|YP_003543103.1| - 0.096 12.1 9.4 0.046 13.1 4.2 2.2 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|294496610|ref|YP_003543103.1| - 0.11 12.2 1.6 0.12 12.0 1.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family C1_1 PF00130.17 gi|294496610|ref|YP_003543103.1| - 0.12 12.1 1.4 0.15 11.8 1.0 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-RanBP PF00641.13 gi|294496610|ref|YP_003543103.1| - 0.79 8.8 6.1 1.5 7.9 3.4 1.8 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others zinc_ribbon_4 PF13717.1 gi|294496610|ref|YP_003543103.1| - 1.1 9.0 6.8 1.1 8.9 1.1 2.3 1 1 1 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|294496610|ref|YP_003543103.1| - 1.1 9.0 3.8 2.6 7.8 2.6 1.6 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.13 gi|294496610|ref|YP_003543103.1| - 1.4 8.5 5.8 5.6 6.6 0.7 2.1 1 1 3 4 4 4 0 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.1 gi|294496610|ref|YP_003543103.1| - 1.5 8.4 6.8 1.2 8.7 1.0 2.2 1 1 1 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|294496610|ref|YP_003543103.1| - 2.5 7.8 6.9 14 5.4 4.6 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit GatB_N PF02934.10 gi|294496611|ref|YP_003543104.1| - 6.4e-110 366.5 0.0 8.8e-110 366.1 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|294496611|ref|YP_003543104.1| - 3.6e-40 137.0 0.5 5.4e-40 136.5 0.3 1.3 1 0 0 1 1 1 1 GatB domain zf-Di19 PF05605.7 gi|294496611|ref|YP_003543104.1| - 0.027 14.5 0.6 0.056 13.5 0.4 1.5 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Amidase PF01425.16 gi|294496612|ref|YP_003543105.1| - 3.6e-154 513.8 0.1 4e-154 513.6 0.1 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.10 gi|294496613|ref|YP_003543106.1| - 1.5e-23 82.3 0.4 1.8e-23 82.0 0.3 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit FrhB_FdhB_C PF04432.8 gi|294496614|ref|YP_003543107.1| - 6.4e-40 136.1 0.3 1.8e-39 134.7 0.0 1.8 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|294496614|ref|YP_003543107.1| - 7.9e-24 83.3 0.0 1.7e-23 82.3 0.0 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term YHS PF04945.8 gi|294496614|ref|YP_003543107.1| - 2.2e-09 37.0 2.2 4.9e-09 35.8 1.5 1.6 1 0 0 1 1 1 1 YHS domain Fer4_8 PF13183.1 gi|294496614|ref|YP_003543107.1| - 1.1e-05 25.3 10.5 0.01 15.8 0.5 3.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain zf-FCS PF06467.9 gi|294496614|ref|YP_003543107.1| - 0.00011 21.6 2.9 0.00011 21.6 2.0 3.1 4 0 0 4 4 3 1 MYM-type Zinc finger with FCS sequence motif Fer4_10 PF13237.1 gi|294496614|ref|YP_003543107.1| - 0.00016 21.4 12.5 0.00016 21.4 8.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|294496614|ref|YP_003543107.1| - 0.00061 20.0 14.5 0.015 15.5 1.1 2.8 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|294496614|ref|YP_003543107.1| - 0.00085 19.6 12.0 0.054 13.8 0.9 3.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|294496614|ref|YP_003543107.1| - 0.0061 16.7 18.0 0.031 14.6 1.3 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|294496614|ref|YP_003543107.1| - 0.0063 17.0 6.9 0.29 11.7 0.2 3.0 3 0 0 3 3 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|294496614|ref|YP_003543107.1| - 0.02 15.1 16.2 0.2 12.0 1.6 3.1 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|294496614|ref|YP_003543107.1| - 0.029 14.2 16.6 0.08 12.8 1.7 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Ribosomal_L24e PF01246.15 gi|294496614|ref|YP_003543107.1| - 0.045 13.6 0.2 0.15 11.9 0.1 1.9 1 0 0 1 1 1 0 Ribosomal protein L24e Fer4_16 PF13484.1 gi|294496614|ref|YP_003543107.1| - 0.062 14.0 16.5 0.36 11.5 1.7 3.5 4 0 0 4 4 3 0 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|294496614|ref|YP_003543107.1| - 0.075 12.6 21.5 0.088 12.4 2.3 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|294496614|ref|YP_003543107.1| - 0.28 11.0 14.6 0.11 12.3 7.9 2.1 2 0 0 2 2 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|294496614|ref|YP_003543107.1| - 0.56 10.2 18.5 0.72 9.8 2.5 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|294496614|ref|YP_003543107.1| - 0.68 10.4 13.4 1.2 9.5 1.4 2.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Radical_SAM PF04055.16 gi|294496615|ref|YP_003543108.1| - 2.1e-14 54.0 0.9 3.6e-14 53.2 0.6 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Aldo_ket_red PF00248.16 gi|294496615|ref|YP_003543108.1| - 0.12 11.1 0.0 0.17 10.6 0.0 1.2 1 0 0 1 1 1 0 Aldo/keto reductase family DUF1614 PF07758.6 gi|294496616|ref|YP_003543109.1| - 0.016 14.9 1.6 0.017 14.8 1.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1614) Nodulin-like PF06813.8 gi|294496616|ref|YP_003543109.1| - 0.025 13.8 0.8 0.026 13.7 0.6 1.0 1 0 0 1 1 1 0 Nodulin-like PilX_N PF14341.1 gi|294496616|ref|YP_003543109.1| - 0.04 13.5 1.0 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 PilX N-terminal ABC2_membrane_5 PF13346.1 gi|294496616|ref|YP_003543109.1| - 0.049 12.9 2.0 0.058 12.6 1.4 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3007 PF11460.3 gi|294496616|ref|YP_003543109.1| - 0.059 13.4 1.4 0.064 13.3 1.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) PMP1_2 PF08114.6 gi|294496616|ref|YP_003543109.1| - 0.084 12.3 0.2 0.084 12.3 0.1 1.8 2 0 0 2 2 2 0 ATPase proteolipid family P12 PF12669.2 gi|294496616|ref|YP_003543109.1| - 0.086 13.0 6.9 0.78 9.9 1.0 2.1 2 0 0 2 2 2 0 Virus attachment protein p12 family TCR_zetazeta PF11628.3 gi|294496616|ref|YP_003543109.1| - 0.12 11.8 0.4 0.2 11.1 0.3 1.5 1 0 0 1 1 1 0 T-cell surface glycoprotein CD3 zeta chain DUF4131 PF13567.1 gi|294496616|ref|YP_003543109.1| - 0.12 11.7 0.9 0.13 11.6 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) PrgI PF12666.2 gi|294496616|ref|YP_003543109.1| - 0.12 12.4 1.4 0.15 12.2 1.0 1.1 1 0 0 1 1 1 0 PrgI family protein RseC_MucC PF04246.7 gi|294496616|ref|YP_003543109.1| - 0.23 11.0 1.9 0.28 10.7 1.3 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF843 PF05814.6 gi|294496616|ref|YP_003543109.1| - 0.38 10.5 2.3 0.45 10.3 1.6 1.2 1 0 0 1 1 1 0 Baculovirus protein of unknown function (DUF843) DUF4282 PF14110.1 gi|294496616|ref|YP_003543109.1| - 0.96 9.6 5.9 1.1 9.5 4.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF2970 PF11174.3 gi|294496616|ref|YP_003543109.1| - 1.2 8.7 12.0 2.6 7.6 1.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2970) DUF347 PF03988.7 gi|294496616|ref|YP_003543109.1| - 1.5 8.7 5.9 0.77 9.6 0.1 2.0 1 1 1 2 2 2 0 Repeat of Unknown Function (DUF347) DUF4006 PF13179.1 gi|294496616|ref|YP_003543109.1| - 3.4 7.2 5.0 6.3 6.4 0.4 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF4006) SdpI PF13630.1 gi|294496616|ref|YP_003543109.1| - 4.3 7.1 6.2 5.7 6.7 4.3 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family OppC_N PF12911.2 gi|294496616|ref|YP_003543109.1| - 5.8 6.3 7.8 2.6 7.4 0.6 2.1 1 1 1 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF4083 PF13314.1 gi|294496616|ref|YP_003543109.1| - 7.3 6.5 13.0 7.2 6.5 1.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4083) Mrr_cat PF04471.7 gi|294496617|ref|YP_003543110.1| - 4.1e-29 100.7 0.0 1.5e-28 98.9 0.0 1.9 2 0 0 2 2 2 1 Restriction endonuclease bPH_3 PF14470.1 gi|294496617|ref|YP_003543110.1| - 0.00022 21.4 0.3 0.0014 18.8 0.0 2.1 2 0 0 2 2 2 1 Bacterial PH domain bPH_1 PF08000.6 gi|294496617|ref|YP_003543110.1| - 0.13 11.9 0.8 0.34 10.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial PH domain Thioredoxin PF00085.15 gi|294496618|ref|YP_003543111.1| - 1.3e-27 95.5 0.0 1.5e-27 95.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|294496618|ref|YP_003543111.1| - 1.9e-07 31.2 0.6 5.5e-06 26.5 0.4 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|294496618|ref|YP_003543111.1| - 5.9e-06 26.3 0.0 0.0036 17.3 0.0 2.3 1 1 1 2 2 2 2 Thioredoxin-like Phosducin PF02114.11 gi|294496618|ref|YP_003543111.1| - 0.0042 15.8 0.0 0.0052 15.5 0.0 1.1 1 0 0 1 1 1 1 Phosducin Thioredoxin_9 PF14595.1 gi|294496618|ref|YP_003543111.1| - 0.0096 15.4 0.0 0.014 14.9 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin DUF953 PF06110.6 gi|294496618|ref|YP_003543111.1| - 0.036 13.5 0.0 0.22 10.9 0.0 2.0 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) Thioredoxin_3 PF13192.1 gi|294496618|ref|YP_003543111.1| - 0.044 13.5 0.0 0.15 11.9 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin domain Redoxin PF08534.5 gi|294496618|ref|YP_003543111.1| - 0.072 12.6 0.2 0.46 10.0 0.1 1.9 1 1 1 2 2 2 0 Redoxin Thioredoxin_7 PF13899.1 gi|294496618|ref|YP_003543111.1| - 0.092 12.7 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like HyaE PF07449.6 gi|294496618|ref|YP_003543111.1| - 0.096 12.5 0.0 0.19 11.6 0.0 1.5 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE DUF2114 PF09887.4 gi|294496619|ref|YP_003543112.1| - 4e-224 743.9 2.0 4.8e-224 743.6 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) dTMP_synthase PF02593.9 gi|294496620|ref|YP_003543113.1| - 3.1e-61 206.5 0.0 3.5e-61 206.3 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase Thymidylate_kin PF02223.12 gi|294496621|ref|YP_003543114.1| - 9.4e-42 142.4 0.0 1.1e-41 142.2 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.1 gi|294496621|ref|YP_003543114.1| - 1.2e-06 28.6 0.0 1.4e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|294496621|ref|YP_003543114.1| - 8.9e-06 26.0 0.1 5e-05 23.6 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|294496621|ref|YP_003543114.1| - 0.0034 17.2 0.1 0.25 11.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|294496621|ref|YP_003543114.1| - 0.0056 16.5 0.0 0.017 15.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|294496621|ref|YP_003543114.1| - 0.016 15.3 0.0 0.082 13.0 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|294496621|ref|YP_003543114.1| - 0.031 15.0 0.1 0.087 13.6 0.0 2.0 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|294496621|ref|YP_003543114.1| - 0.043 14.1 0.1 0.096 12.9 0.1 1.9 1 1 0 1 1 1 0 ABC transporter Arf PF00025.16 gi|294496621|ref|YP_003543114.1| - 0.049 12.8 0.0 0.09 12.0 0.0 1.5 1 0 0 1 1 1 0 ADP-ribosylation factor family His_biosynth PF00977.16 gi|294496623|ref|YP_003543116.1| - 2.1e-38 131.8 0.1 2.4e-38 131.6 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|294496623|ref|YP_003543116.1| - 0.0019 17.3 0.4 0.31 10.0 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|294496623|ref|YP_003543116.1| - 0.0021 17.3 0.1 0.1 11.8 0.0 2.1 2 0 0 2 2 2 2 PcrB family Trp_syntA PF00290.15 gi|294496623|ref|YP_003543116.1| - 0.078 11.4 0.0 0.57 8.6 0.0 1.9 2 0 0 2 2 2 0 Tryptophan synthase alpha chain DUF556 PF04476.8 gi|294496624|ref|YP_003543117.1| - 1.4e-88 296.0 3.3 1.6e-88 295.9 2.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF556) QRPTase_C PF01729.14 gi|294496624|ref|YP_003543117.1| - 1.5e-07 31.1 0.1 3.2e-06 26.7 0.0 2.2 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain Pterin_bind PF00809.17 gi|294496624|ref|YP_003543117.1| - 0.19 11.0 0.8 7.2 5.9 0.0 2.3 1 1 1 2 2 2 0 Pterin binding enzyme UPF0278 PF08745.6 gi|294496625|ref|YP_003543118.1| - 2.8e-90 301.0 0.1 3.2e-90 300.8 0.1 1.0 1 0 0 1 1 1 1 UPF0278 family Phage_RpbA PF10789.4 gi|294496625|ref|YP_003543118.1| - 0.089 12.6 0.7 0.67 9.8 0.1 2.3 1 1 1 2 2 2 0 Phage RNA polymerase binding, RpbA UbiA PF01040.13 gi|294496626|ref|YP_003543119.1| - 2.9e-40 138.1 22.6 3.6e-40 137.8 15.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family NadA PF02445.11 gi|294496627|ref|YP_003543120.1| - 2.9e-122 407.1 3.8 3.3e-122 406.9 2.6 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Plasmod_Pvs28 PF06247.6 gi|294496627|ref|YP_003543120.1| - 0.00069 19.2 0.2 0.00069 19.2 0.1 1.6 2 0 0 2 2 2 1 Plasmodium ookinete surface protein Pvs28 zf-GRF PF06839.7 gi|294496627|ref|YP_003543120.1| - 0.1 12.5 0.1 0.31 10.9 0.1 1.8 1 0 0 1 1 1 0 GRF zinc finger DUF108 PF01958.13 gi|294496628|ref|YP_003543121.1| - 5.8e-38 129.0 0.7 1.1e-37 128.1 0.5 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|294496628|ref|YP_003543121.1| - 2.6e-24 85.8 0.1 5e-24 84.9 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|294496628|ref|YP_003543121.1| - 8.6e-07 28.9 0.1 1.6e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|294496628|ref|YP_003543121.1| - 4e-06 27.1 0.1 6.1e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|294496628|ref|YP_003543121.1| - 7.2e-06 26.5 0.1 1.5e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|294496628|ref|YP_003543121.1| - 9e-05 22.8 0.1 0.00017 21.9 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|294496628|ref|YP_003543121.1| - 0.0015 17.5 0.3 0.0016 17.5 0.2 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|294496628|ref|YP_003543121.1| - 0.019 14.0 0.1 0.11 11.6 0.0 1.9 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|294496628|ref|YP_003543121.1| - 0.026 14.3 0.1 0.04 13.7 0.1 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Rossmann-like PF10727.4 gi|294496628|ref|YP_003543121.1| - 0.027 14.1 0.1 0.09 12.5 0.1 1.8 1 1 1 2 2 2 0 Rossmann-like domain 3HCDH_N PF02737.13 gi|294496628|ref|YP_003543121.1| - 0.047 13.3 0.2 0.082 12.5 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Gp_dh_N PF00044.19 gi|294496628|ref|YP_003543121.1| - 0.14 12.0 0.5 0.83 9.5 0.2 2.2 2 1 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain QRPTase_C PF01729.14 gi|294496629|ref|YP_003543122.1| - 9.1e-55 184.7 1.8 9.1e-55 184.7 1.3 1.4 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|294496629|ref|YP_003543122.1| - 2.5e-23 81.6 0.0 8e-23 80.0 0.0 1.9 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|294496629|ref|YP_003543122.1| - 0.00014 21.0 0.1 0.00027 20.1 0.1 1.5 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.12 gi|294496629|ref|YP_003543122.1| - 0.056 12.5 0.2 0.12 11.4 0.1 1.6 1 1 0 1 1 1 0 Thiamine monophosphate synthase/TENI DUF3169 PF11368.3 gi|294496631|ref|YP_003543124.1| - 0.0096 15.1 14.5 0.012 14.8 10.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3169) YobH PF13996.1 gi|294496631|ref|YP_003543124.1| - 5.2 7.0 6.2 14 5.7 1.9 2.4 2 0 0 2 2 2 0 YobH-like protein AIPR PF10592.4 gi|294496633|ref|YP_003543126.1| - 3.1e-46 158.0 13.6 3.1e-46 158.0 9.4 1.8 2 0 0 2 2 2 1 AIPR protein DUF11 PF01345.13 gi|294496634|ref|YP_003543127.1| - 2.1e-16 59.7 0.6 1.6e-08 34.4 0.1 2.7 2 1 0 2 2 2 2 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|294496634|ref|YP_003543127.1| - 1.6e-09 37.2 2.5 0.00035 19.7 0.2 2.5 1 1 1 2 2 2 2 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.4 gi|294496634|ref|YP_003543127.1| - 1.2e-08 34.8 0.1 0.0071 16.3 0.0 3.5 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|294496634|ref|YP_003543127.1| - 2e-08 34.1 3.2 0.00021 21.2 0.2 2.6 2 0 0 2 2 2 2 CARDB BatD PF13584.1 gi|294496634|ref|YP_003543127.1| - 1.1e-06 27.6 1.8 7.5e-05 21.5 0.4 2.3 2 0 0 2 2 2 2 Oxygen tolerance DUF2393 PF09624.5 gi|294496634|ref|YP_003543127.1| - 0.0025 17.3 4.7 0.19 11.2 0.0 2.9 3 0 0 3 3 3 2 Protein of unknown function (DUF2393) Gryzun PF07919.7 gi|294496634|ref|YP_003543127.1| - 0.029 12.6 0.3 0.037 12.3 0.2 1.3 1 0 0 1 1 1 0 Gryzun, putative trafficking through Golgi Tubulin PF00091.20 gi|294496635|ref|YP_003543128.1| - 7.2e-31 107.6 0.1 1.4e-30 106.7 0.1 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|294496635|ref|YP_003543128.1| - 9.2e-05 21.5 0.1 0.0011 17.9 0.0 2.6 1 1 0 1 1 1 1 Tubulin like ABC_tran PF00005.22 gi|294496636|ref|YP_003543129.1| - 8.3e-35 120.0 0.1 1.4e-34 119.3 0.0 1.4 2 0 0 2 2 1 1 ABC transporter SMC_N PF02463.14 gi|294496636|ref|YP_003543129.1| - 1.7e-09 37.2 0.2 2.7e-07 30.0 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|294496636|ref|YP_003543129.1| - 7.7e-08 32.6 0.1 0.0074 16.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|294496636|ref|YP_003543129.1| - 9.1e-05 21.9 0.3 0.00019 20.8 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.7 gi|294496636|ref|YP_003543129.1| - 0.00016 21.3 0.6 0.12 11.9 0.1 2.9 2 1 1 3 3 3 2 NACHT domain AAA_16 PF13191.1 gi|294496636|ref|YP_003543129.1| - 0.00061 19.8 0.2 0.0013 18.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|294496636|ref|YP_003543129.1| - 0.0008 18.8 0.2 0.03 13.7 0.1 2.4 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|294496636|ref|YP_003543129.1| - 0.0011 19.0 0.5 0.016 15.3 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|294496636|ref|YP_003543129.1| - 0.0033 17.2 0.3 0.012 15.5 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|294496636|ref|YP_003543129.1| - 0.007 15.8 0.6 0.034 13.5 0.4 1.9 1 1 1 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|294496636|ref|YP_003543129.1| - 0.0086 15.2 0.1 0.016 14.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|294496636|ref|YP_003543129.1| - 0.014 15.7 0.2 0.034 14.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|294496636|ref|YP_003543129.1| - 0.018 14.9 0.0 0.17 11.8 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|294496636|ref|YP_003543129.1| - 0.02 13.9 0.0 0.77 8.7 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain G-alpha PF00503.15 gi|294496636|ref|YP_003543129.1| - 0.034 12.8 0.0 0.034 12.8 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit MobB PF03205.9 gi|294496636|ref|YP_003543129.1| - 0.047 13.3 0.1 0.091 12.4 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|294496636|ref|YP_003543129.1| - 0.064 14.0 1.4 0.15 12.9 0.5 1.9 2 1 0 2 2 2 0 AAA domain PIN_4 PF13638.1 gi|294496636|ref|YP_003543129.1| - 0.066 13.3 0.0 0.087 12.9 0.0 1.2 1 0 0 1 1 1 0 PIN domain NB-ARC PF00931.17 gi|294496636|ref|YP_003543129.1| - 0.071 11.9 0.1 0.14 10.9 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.16 gi|294496636|ref|YP_003543129.1| - 0.11 11.6 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.1 gi|294496636|ref|YP_003543129.1| - 0.13 12.2 0.0 0.26 11.2 0.0 1.6 2 0 0 2 2 1 0 AAA domain MMR_HSR1 PF01926.18 gi|294496636|ref|YP_003543129.1| - 0.22 11.4 1.0 1 9.3 0.7 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF296 PF03479.10 gi|294496637|ref|YP_003543130.1| - 6.6e-17 61.2 0.0 7.5e-17 61.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) TrmB PF01978.14 gi|294496638|ref|YP_003543131.1| - 0.0015 18.2 0.0 0.0022 17.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|294496638|ref|YP_003543131.1| - 0.004 16.7 0.1 0.011 15.4 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|294496638|ref|YP_003543131.1| - 0.01 15.8 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|294496638|ref|YP_003543131.1| - 0.011 15.4 0.0 0.019 14.7 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|294496638|ref|YP_003543131.1| - 0.021 14.7 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein MarR_2 PF12802.2 gi|294496638|ref|YP_003543131.1| - 0.025 14.2 0.0 0.05 13.2 0.0 1.6 1 1 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|294496638|ref|YP_003543131.1| - 0.037 13.4 0.2 0.13 11.6 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_37 PF13744.1 gi|294496638|ref|YP_003543131.1| - 0.048 13.4 0.0 0.18 11.6 0.0 1.8 1 1 1 2 2 2 0 Helix-turn-helix domain Phage_rep_O PF04492.8 gi|294496638|ref|YP_003543131.1| - 0.064 13.4 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage replication protein O PadR PF03551.9 gi|294496638|ref|YP_003543131.1| - 0.071 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Enolase_C PF00113.17 gi|294496639|ref|YP_003543132.1| - 3.1e-113 377.6 1.1 4.2e-113 377.2 0.8 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|294496639|ref|YP_003543132.1| - 7e-59 197.4 0.5 3.8e-58 195.1 0.1 2.3 3 0 0 3 3 3 1 Enolase, N-terminal domain MacB_PCD PF12704.2 gi|294496640|ref|YP_003543133.1| - 6.7e-28 97.8 0.1 6.7e-28 97.8 0.1 1.8 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|294496640|ref|YP_003543133.1| - 2.9e-22 78.6 9.4 2.9e-22 78.6 6.5 2.1 2 0 0 2 2 2 1 FtsX-like permease family DUF1372 PF07116.6 gi|294496640|ref|YP_003543133.1| - 0.084 12.8 0.9 1.1 9.2 0.2 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1372) HATPase_c_2 PF13581.1 gi|294496640|ref|YP_003543133.1| - 0.096 12.4 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF3357 PF11837.3 gi|294496640|ref|YP_003543133.1| - 0.15 11.9 0.1 0.4 10.5 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) DNA_pol_B PF00136.16 gi|294496641|ref|YP_003543134.1| - 5.8e-119 397.9 0.1 8.2e-119 397.4 0.1 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|294496641|ref|YP_003543134.1| - 2.5e-59 200.7 0.0 3.8e-59 200.1 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|294496641|ref|YP_003543134.1| - 0.00032 20.2 0.0 0.00077 19.0 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.1 gi|294496641|ref|YP_003543134.1| - 0.0024 17.6 0.0 0.0053 16.5 0.0 1.6 1 0 0 1 1 1 1 RNase_H superfamily peroxidase PF00141.18 gi|294496642|ref|YP_003543135.1| - 1.1e-90 303.1 0.0 4.3e-48 163.8 0.0 2.2 2 0 0 2 2 2 2 Peroxidase Telomere_Sde2_2 PF13297.1 gi|294496642|ref|YP_003543135.1| - 0.96 8.7 3.3 0.81 9.0 0.7 2.0 2 0 0 2 2 2 0 Telomere stability C-terminal PAS_9 PF13426.1 gi|294496643|ref|YP_003543136.1| - 7.2e-42 141.9 0.4 2.2e-20 72.9 0.1 3.3 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|294496643|ref|YP_003543136.1| - 1.7e-33 114.7 0.0 1e-16 60.7 0.0 2.5 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|294496643|ref|YP_003543136.1| - 9.9e-33 112.1 0.1 2.1e-32 111.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|294496643|ref|YP_003543136.1| - 2.8e-28 97.8 0.1 4e-09 36.4 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|294496643|ref|YP_003543136.1| - 9.9e-28 96.3 0.0 2.4e-12 46.8 0.0 3.2 3 0 0 3 3 3 2 PAS fold HisKA PF00512.20 gi|294496643|ref|YP_003543136.1| - 1.1e-19 70.1 0.0 2.2e-19 69.1 0.0 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|294496643|ref|YP_003543136.1| - 2.9e-11 42.7 0.0 0.00021 21.0 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_10 PF13596.1 gi|294496643|ref|YP_003543136.1| - 2.7e-10 40.4 0.0 0.0011 19.1 0.0 3.0 3 0 0 3 3 3 2 PAS domain HATPase_c_5 PF14501.1 gi|294496643|ref|YP_003543136.1| - 0.00099 18.7 0.0 0.0036 16.9 0.0 2.0 1 0 0 1 1 1 1 GHKL domain Snf7 PF03357.16 gi|294496643|ref|YP_003543136.1| - 0.0093 15.3 3.3 2.4 7.5 0.3 3.3 3 0 0 3 3 3 1 Snf7 DUF2111 PF09884.4 gi|294496643|ref|YP_003543136.1| - 0.015 15.1 0.0 0.81 9.5 0.0 2.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2111) Hemocyanin_C PF03723.9 gi|294496643|ref|YP_003543136.1| - 0.033 13.3 0.2 6.3 5.8 0.0 2.2 2 0 0 2 2 2 0 Hemocyanin, ig-like domain Arc_PepC PF06819.6 gi|294496643|ref|YP_003543136.1| - 0.054 13.4 0.0 0.16 11.8 0.0 1.8 1 0 0 1 1 1 0 Archaeal Peptidase A24 C-terminal Domain DivIC PF04977.10 gi|294496643|ref|YP_003543136.1| - 0.069 12.6 0.3 0.069 12.6 0.2 2.6 4 0 0 4 4 4 0 Septum formation initiator DUF1936 PF09151.5 gi|294496643|ref|YP_003543136.1| - 0.09 12.2 0.0 20 4.7 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) SDF PF00375.13 gi|294496644|ref|YP_003543137.1| - 9.4e-123 409.8 43.5 1.1e-122 409.6 30.1 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family MOZART2 PF12926.2 gi|294496644|ref|YP_003543137.1| - 0.041 13.4 0.2 0.49 10.0 0.0 2.7 2 1 0 2 2 2 0 Mitotic-spindle organizing gamma-tubulin ring associated NTP_transf_2 PF01909.18 gi|294496645|ref|YP_003543138.1| - 3.6e-14 52.8 1.5 4.4e-14 52.5 1.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.12 gi|294496646|ref|YP_003543139.1| - 1e-26 92.9 0.0 1.3e-26 92.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF2361 PF10153.4 gi|294496647|ref|YP_003543140.1| - 0.019 15.1 0.0 0.026 14.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2361) Tnp_P_element_C PF12596.3 gi|294496647|ref|YP_003543140.1| - 0.046 14.0 0.2 0.086 13.1 0.1 1.6 1 1 0 1 1 1 0 87kDa Transposase tRNA_anti-codon PF01336.20 gi|294496648|ref|YP_003543141.1| - 0.075 12.8 0.1 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain YcfA PF07927.7 gi|294496649|ref|YP_003543142.1| - 2.3e-05 24.2 0.2 2.5e-05 24.0 0.1 1.2 1 0 0 1 1 1 1 YcfA-like protein DUF4300 PF14133.1 gi|294496649|ref|YP_003543142.1| - 0.093 11.9 0.1 0.099 11.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4300) OrfB_Zn_ribbon PF07282.6 gi|294496650|ref|YP_003543143.1| - 6.6e-22 76.9 1.3 1.9e-21 75.5 0.9 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|294496650|ref|YP_003543143.1| - 1.5e-15 57.2 1.2 2.5e-15 56.4 0.8 1.5 1 0 0 1 1 1 1 Probable transposase GSIII_N PF12437.3 gi|294496650|ref|YP_003543143.1| - 0.015 14.7 0.2 1.9 7.8 0.0 2.3 2 0 0 2 2 2 0 Glutamine synthetase type III N terminal OmpH PF03938.9 gi|294496650|ref|YP_003543143.1| - 0.058 13.3 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) S-layer PF07752.6 gi|294496652|ref|YP_003543145.1| - 2.1e-126 420.4 47.1 3.9e-64 216.3 14.0 2.0 2 0 0 2 2 2 2 S-layer protein DUF3308 PF11751.3 gi|294496652|ref|YP_003543145.1| - 0.0024 17.1 2.2 1.2 8.3 0.2 2.5 2 1 0 2 2 2 2 Protein of unknown function (DUF3308) Trypan_PARP PF05887.6 gi|294496652|ref|YP_003543145.1| - 0.0044 16.8 23.7 0.0044 16.8 16.4 2.0 2 0 0 2 2 2 1 Procyclic acidic repetitive protein (PARP) WIF PF02019.13 gi|294496652|ref|YP_003543145.1| - 0.015 14.6 2.0 29 4.1 0.0 4.1 2 2 2 4 4 4 0 WIF domain CBM_2 PF00553.14 gi|294496652|ref|YP_003543145.1| - 0.02 14.9 1.6 6.9 6.7 0.1 2.6 2 0 0 2 2 2 0 Cellulose binding domain Autotrns_rpt PF12951.2 gi|294496652|ref|YP_003543145.1| - 0.17 11.5 1.8 20 5.0 0.1 2.8 2 0 0 2 2 2 0 Autotransporter-associated beta strand repeat Sugarporin_N PF11471.3 gi|294496652|ref|YP_003543145.1| - 0.19 11.3 0.1 0.33 10.6 0.1 1.3 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension KaiC PF06745.8 gi|294496653|ref|YP_003543146.1| - 1e-70 237.4 0.5 1.1e-70 237.2 0.3 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|294496653|ref|YP_003543146.1| - 6.8e-07 28.8 0.0 9.6e-07 28.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|294496653|ref|YP_003543146.1| - 0.093 12.1 0.1 0.17 11.2 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain E1-E2_ATPase PF00122.15 gi|294496654|ref|YP_003543147.1| - 4.8e-72 241.7 3.3 4.8e-72 241.7 2.3 2.5 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|294496654|ref|YP_003543147.1| - 5.9e-39 134.7 0.0 1.3e-38 133.6 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|294496654|ref|YP_003543147.1| - 2.1e-37 128.4 9.3 2.1e-37 128.4 6.5 2.0 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase_like2 PF13246.1 gi|294496654|ref|YP_003543147.1| - 1.1e-23 83.0 0.0 2e-23 82.1 0.0 1.5 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|294496654|ref|YP_003543147.1| - 2.8e-18 66.7 0.1 6.3e-18 65.6 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|294496654|ref|YP_003543147.1| - 6.1e-13 48.0 0.0 2.1e-12 46.2 0.0 2.0 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|294496654|ref|YP_003543147.1| - 6.1e-06 26.0 0.4 0.0023 17.5 0.3 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|294496654|ref|YP_003543147.1| - 0.055 13.6 0.0 0.18 11.9 0.0 1.8 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Na_H_Exchanger PF00999.16 gi|294496655|ref|YP_003543148.1| - 2.8e-63 213.7 53.8 3.3e-63 213.4 37.3 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CBS PF00571.23 gi|294496656|ref|YP_003543149.1| - 1.9e-27 94.7 0.6 4.4e-13 48.7 0.1 2.1 2 0 0 2 2 2 2 CBS domain ABC_tran PF00005.22 gi|294496657|ref|YP_003543150.1| - 1.1e-30 106.6 0.0 2.2e-30 105.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|294496657|ref|YP_003543150.1| - 4.7e-13 49.7 1.9 8.1e-08 32.5 0.0 2.3 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|294496657|ref|YP_003543150.1| - 1.6e-07 30.8 0.0 2.8e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|294496657|ref|YP_003543150.1| - 0.00025 20.2 0.2 0.11 11.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|294496657|ref|YP_003543150.1| - 0.00026 20.4 0.1 0.00056 19.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|294496657|ref|YP_003543150.1| - 0.013 15.7 0.1 0.023 15.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|294496657|ref|YP_003543150.1| - 0.025 13.0 0.1 1.3 7.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|294496657|ref|YP_003543150.1| - 0.029 14.0 0.2 0.26 11.0 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|294496657|ref|YP_003543150.1| - 0.052 12.7 0.0 0.085 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 BCA_ABC_TP_C PF12399.3 gi|294496657|ref|YP_003543150.1| - 0.078 12.6 0.1 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter POR PF01558.13 gi|294496657|ref|YP_003543150.1| - 0.1 12.5 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase ABC_ATPase PF09818.4 gi|294496657|ref|YP_003543150.1| - 0.14 10.6 0.0 0.22 10.0 0.0 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class CbiQ PF02361.11 gi|294496658|ref|YP_003543151.1| - 1.1e-31 110.1 8.3 1.6e-31 109.6 5.8 1.1 1 0 0 1 1 1 1 Cobalt transport protein CbiN PF02553.10 gi|294496659|ref|YP_003543152.1| - 2.1e-20 72.4 0.6 2.7e-20 72.1 0.4 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN PsbJ PF01788.12 gi|294496659|ref|YP_003543152.1| - 6 6.4 8.5 6 6.4 1.3 2.3 2 0 0 2 2 2 0 PsbJ CbiM PF01891.11 gi|294496660|ref|YP_003543153.1| - 9.1e-56 188.7 22.6 1e-55 188.5 15.7 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|294496660|ref|YP_003543153.1| - 0.036 13.9 25.4 0.0083 16.0 15.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3816) TP_methylase PF00590.15 gi|294496661|ref|YP_003543154.1| - 2.6e-26 92.6 0.1 5.3e-26 91.6 0.1 1.4 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiD PF01888.12 gi|294496662|ref|YP_003543155.1| - 1.3e-53 181.6 2.7 2.2e-53 180.8 1.8 1.3 1 0 0 1 1 1 1 CbiD MutL_C PF08676.6 gi|294496663|ref|YP_003543156.1| - 9.1e-41 138.8 0.0 1.8e-40 137.8 0.0 1.5 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|294496663|ref|YP_003543156.1| - 2.7e-37 126.8 0.0 4.4e-37 126.1 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|294496663|ref|YP_003543156.1| - 2.1e-13 50.0 0.1 3.9e-13 49.2 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|294496663|ref|YP_003543156.1| - 7.9e-11 41.6 0.4 2e-10 40.3 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MutS_V PF00488.16 gi|294496664|ref|YP_003543157.1| - 2.5e-100 334.7 0.0 5e-100 333.7 0.0 1.5 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|294496664|ref|YP_003543157.1| - 2.6e-53 180.8 0.7 5.1e-53 179.8 0.2 1.7 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|294496664|ref|YP_003543157.1| - 2.2e-44 150.0 0.0 5.4e-44 148.8 0.0 1.7 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|294496664|ref|YP_003543157.1| - 7.1e-31 106.2 0.2 1.8e-30 104.9 0.2 1.8 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|294496664|ref|YP_003543157.1| - 1.5e-21 76.9 0.0 3.6e-21 75.6 0.0 1.7 1 0 0 1 1 1 1 MutS domain II AAA_29 PF13555.1 gi|294496664|ref|YP_003543157.1| - 0.0055 16.2 0.0 0.011 15.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4350 PF14258.1 gi|294496664|ref|YP_003543157.1| - 0.037 14.2 0.0 0.15 12.2 0.0 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) AAA_14 PF13173.1 gi|294496664|ref|YP_003543157.1| - 0.076 12.9 0.0 0.37 10.6 0.0 2.2 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|294496664|ref|YP_003543157.1| - 0.11 12.7 0.0 0.51 10.6 0.0 2.2 2 1 1 3 3 3 0 ABC transporter ABC2_membrane PF01061.19 gi|294496665|ref|YP_003543158.1| - 6.8e-20 71.1 22.9 6.8e-20 71.1 15.9 1.8 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|294496665|ref|YP_003543158.1| - 9.4e-08 31.4 32.9 1.3e-07 31.0 22.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|294496666|ref|YP_003543159.1| - 1.5e-30 106.3 0.0 2.3e-30 105.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|294496666|ref|YP_003543159.1| - 9.5e-16 58.5 0.0 1e-13 51.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|294496666|ref|YP_003543159.1| - 3.3e-05 24.2 0.0 4.9e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|294496666|ref|YP_003543159.1| - 0.00093 18.4 0.1 0.022 13.9 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|294496666|ref|YP_003543159.1| - 0.0015 17.6 0.0 0.13 11.2 0.0 2.2 1 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|294496666|ref|YP_003543159.1| - 0.02 15.0 0.6 0.39 10.8 0.4 2.3 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|294496666|ref|YP_003543159.1| - 0.032 14.1 0.0 0.14 12.1 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|294496666|ref|YP_003543159.1| - 0.05 13.0 0.2 0.54 9.6 0.1 2.2 1 1 1 2 2 2 0 AAA-like domain AAA_29 PF13555.1 gi|294496666|ref|YP_003543159.1| - 0.055 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|294496666|ref|YP_003543159.1| - 0.067 11.6 0.0 0.09 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain UBA_e1_C PF09358.5 gi|294496666|ref|YP_003543159.1| - 0.12 12.5 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Ubiquitin-activating enzyme e1 C-terminal domain TrkH PF02386.11 gi|294496667|ref|YP_003543160.1| - 1.6e-52 178.2 22.0 1.6e-52 178.2 15.2 2.7 2 2 0 2 2 2 2 Cation transport protein DHBP_synthase PF00926.14 gi|294496668|ref|YP_003543161.1| - 2.6e-66 222.5 0.0 3e-66 222.3 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.11 gi|294496669|ref|YP_003543162.1| - 5.6e-45 151.8 0.0 8.6e-45 151.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR PF01047.17 gi|294496669|ref|YP_003543162.1| - 0.00034 20.2 0.0 0.00062 19.4 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|294496669|ref|YP_003543162.1| - 0.0034 17.0 0.0 0.0056 16.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|294496669|ref|YP_003543162.1| - 0.0051 16.1 0.0 0.012 14.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Antitoxin-MazE PF04014.13 gi|294496669|ref|YP_003543162.1| - 0.0073 16.0 1.0 0.018 14.7 0.1 2.1 2 0 0 2 2 2 1 Antidote-toxin recognition MazE HTH_36 PF13730.1 gi|294496669|ref|YP_003543162.1| - 0.052 13.6 0.7 0.07 13.2 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|294496669|ref|YP_003543162.1| - 0.093 12.8 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|294496669|ref|YP_003543162.1| - 0.1 12.4 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Ion_trans PF00520.26 gi|294496670|ref|YP_003543163.1| - 1.6e-22 79.7 15.8 1.6e-22 79.7 10.9 1.9 2 1 0 2 2 2 1 Ion transport protein Ion_trans_2 PF07885.11 gi|294496670|ref|YP_003543163.1| - 3.4e-14 52.3 8.4 3.4e-14 52.3 5.8 2.4 2 1 1 3 3 3 1 Ion channel PKD_channel PF08016.7 gi|294496670|ref|YP_003543163.1| - 0.0074 14.7 12.0 0.0057 15.1 3.9 2.1 1 1 1 2 2 2 2 Polycystin cation channel zf-ribbon_3 PF13248.1 gi|294496670|ref|YP_003543163.1| - 0.012 14.7 1.8 0.02 14.1 1.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|294496670|ref|YP_003543163.1| - 0.049 13.4 1.5 0.077 12.8 1.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF1345 PF07077.6 gi|294496670|ref|YP_003543163.1| - 0.12 11.9 3.1 0.063 12.7 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1345) E1-E2_ATPase PF00122.15 gi|294496671|ref|YP_003543164.1| - 1e-48 165.4 0.1 1e-48 165.4 0.1 2.1 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|294496671|ref|YP_003543164.1| - 1.2e-47 163.1 2.3 2.2e-47 162.2 1.6 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|294496671|ref|YP_003543164.1| - 1.1e-16 61.5 0.0 2.2e-16 60.6 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|294496671|ref|YP_003543164.1| - 3.1e-07 30.2 0.0 0.0025 17.4 0.0 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase CBS PF00571.23 gi|294496671|ref|YP_003543164.1| - 0.01 15.6 0.1 0.24 11.2 0.0 2.5 2 0 0 2 2 2 0 CBS domain T2SI PF02501.12 gi|294496671|ref|YP_003543164.1| - 0.098 12.6 0.1 0.24 11.3 0.0 1.7 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein I FTR_C PF02741.10 gi|294496672|ref|YP_003543165.1| - 2.7e-66 221.9 1.5 2.7e-66 221.9 1.0 1.7 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.13 gi|294496672|ref|YP_003543165.1| - 1.4e-63 212.8 0.0 2.7e-63 211.9 0.0 1.5 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase bPH_2 PF03703.9 gi|294496673|ref|YP_003543166.1| - 7e-18 64.4 0.1 9.3e-18 64.0 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain bPH_4 PF06713.6 gi|294496673|ref|YP_003543166.1| - 0.052 13.4 0.0 0.079 12.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial PH domain DUF2839 PF10999.3 gi|294496673|ref|YP_003543166.1| - 0.35 10.9 1.9 5.1 7.2 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2839) bPH_2 PF03703.9 gi|294496674|ref|YP_003543167.1| - 2e-33 114.2 2.2 5.2e-14 52.0 0.1 3.2 3 0 0 3 3 3 3 Bacterial PH domain DUF1345 PF07077.6 gi|294496674|ref|YP_003543167.1| - 0.00087 18.8 0.6 0.016 14.6 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1345) Rtt106 PF08512.7 gi|294496674|ref|YP_003543167.1| - 0.0028 17.6 1.5 1.5 8.8 0.1 3.0 2 0 0 2 2 2 2 Histone chaperone Rttp106-like TraB PF01963.12 gi|294496675|ref|YP_003543168.1| - 2.7e-53 181.0 0.1 3.5e-53 180.6 0.0 1.1 1 0 0 1 1 1 1 TraB family CBS PF00571.23 gi|294496676|ref|YP_003543169.1| - 1.2e-27 95.3 3.7 8e-16 57.5 0.3 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|294496676|ref|YP_003543169.1| - 1.4e-19 69.7 17.0 4.4e-15 55.1 3.9 2.8 2 1 1 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|294496676|ref|YP_003543169.1| - 0.00014 21.2 1.2 0.00014 21.2 0.8 2.5 2 1 0 2 2 2 1 Peptidase M50B-like Pyridoxal_deC PF00282.14 gi|294496677|ref|YP_003543170.1| - 4.8e-32 110.8 0.0 7.2e-32 110.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|294496677|ref|YP_003543170.1| - 6.5e-07 28.4 0.0 1.5e-06 27.1 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|294496677|ref|YP_003543170.1| - 1.2e-06 27.9 0.0 1.9e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|294496677|ref|YP_003543170.1| - 1.2e-06 27.7 0.0 1.2e-05 24.4 0.0 2.2 1 1 0 1 1 1 1 Aminotransferase class I and II