# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|294494691|ref|YP_003541184.1| - 1.1e-23 83.0 0.4 1.1e-23 83.0 0.4 1.9 2 0 0 2 2 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|294494691|ref|YP_003541184.1| - 1.2e-12 48.3 0.1 5.8e-12 46.1 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|294494691|ref|YP_003541184.1| - 9.4e-10 39.0 0.0 2e-09 37.9 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|294494691|ref|YP_003541184.1| - 4.7e-09 36.8 0.7 1.2e-07 32.3 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain TniB PF05621.11 gi|294494691|ref|YP_003541184.1| - 2.6e-07 30.2 0.4 1.3e-06 27.9 0.0 2.0 2 0 0 2 2 2 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|294494691|ref|YP_003541184.1| - 1.3e-05 25.2 1.7 2.1e-05 24.6 0.4 2.0 2 1 0 2 2 1 1 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 gi|294494691|ref|YP_003541184.1| - 8.6e-05 22.3 0.1 0.00021 21.0 0.1 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF2075 PF09848.9 gi|294494691|ref|YP_003541184.1| - 0.00017 20.9 0.0 0.00025 20.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DEAD PF00270.29 gi|294494691|ref|YP_003541184.1| - 0.00024 20.9 0.3 0.67 9.7 0.0 2.9 3 0 0 3 3 3 2 DEAD/DEAH box helicase NACHT PF05729.12 gi|294494691|ref|YP_003541184.1| - 0.00031 20.7 0.0 0.00065 19.7 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_25 PF13481.6 gi|294494691|ref|YP_003541184.1| - 0.0011 18.5 0.1 0.0031 17.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|294494691|ref|YP_003541184.1| - 0.0027 17.5 0.0 0.14 11.9 0.0 2.6 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain KAP_NTPase PF07693.14 gi|294494691|ref|YP_003541184.1| - 0.0077 15.5 1.1 0.3 10.3 0.0 2.2 1 1 1 2 2 2 1 KAP family P-loop domain DUF815 PF05673.13 gi|294494691|ref|YP_003541184.1| - 0.0096 15.1 0.1 0.024 13.8 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Bac_DnaA PF00308.18 gi|294494691|ref|YP_003541184.1| - 0.011 15.6 0.4 0.082 12.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_7 PF12775.7 gi|294494691|ref|YP_003541184.1| - 0.015 14.8 0.0 0.029 13.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_18 PF13238.6 gi|294494691|ref|YP_003541184.1| - 0.017 15.7 0.0 0.042 14.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain MutS_III PF05192.18 gi|294494691|ref|YP_003541184.1| - 0.017 15.4 1.3 0.03 14.6 1.3 1.5 1 0 0 1 1 1 0 MutS domain III Sigma54_activ_2 PF14532.6 gi|294494691|ref|YP_003541184.1| - 0.02 15.0 0.0 0.045 13.9 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain AAA_2 PF07724.14 gi|294494691|ref|YP_003541184.1| - 0.031 14.4 0.3 0.23 11.6 0.1 2.4 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_assoc_2 PF16193.5 gi|294494691|ref|YP_003541184.1| - 0.033 14.5 0.5 0.095 13.0 0.4 1.9 1 1 0 1 1 1 0 AAA C-terminal domain PhoH PF02562.16 gi|294494691|ref|YP_003541184.1| - 0.035 13.6 0.0 0.085 12.3 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein ResIII PF04851.15 gi|294494691|ref|YP_003541184.1| - 0.045 13.7 0.0 0.1 12.6 0.0 1.7 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_24 PF13479.6 gi|294494691|ref|YP_003541184.1| - 0.061 13.0 0.2 0.11 12.2 0.2 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|294494691|ref|YP_003541184.1| - 0.063 12.5 0.0 0.18 11.1 0.0 1.8 1 0 0 1 1 1 0 Zeta toxin TIP49_C PF17856.1 gi|294494691|ref|YP_003541184.1| - 0.069 13.3 0.1 0.26 11.4 0.1 2.0 2 0 0 2 2 1 0 TIP49 AAA-lid domain AAA_lid_10 PF17872.1 gi|294494691|ref|YP_003541184.1| - 0.092 12.9 0.4 0.21 11.7 0.4 1.6 1 0 0 1 1 1 0 AAA lid domain FtsK_SpoIIIE PF01580.18 gi|294494691|ref|YP_003541184.1| - 0.094 12.1 1.3 0.19 11.0 0.0 2.1 3 0 0 3 3 3 0 FtsK/SpoIIIE family AAA_5 PF07728.14 gi|294494691|ref|YP_003541184.1| - 0.097 12.7 0.3 0.48 10.4 0.3 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|294494691|ref|YP_003541184.1| - 0.14 12.6 0.0 0.35 11.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Peptidase_S24 PF00717.23 gi|294494692|ref|YP_003541185.1| - 5.2e-05 23.1 0.1 9.3e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.16 gi|294494693|ref|YP_003541186.1| - 1.6e-14 53.8 0.0 2.4e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|294494693|ref|YP_003541186.1| - 1.7e-12 48.3 0.3 2.6e-12 47.7 0.3 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|294494693|ref|YP_003541186.1| - 3.9e-10 40.2 0.4 1.3e-09 38.4 0.4 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.25 gi|294494693|ref|YP_003541186.1| - 2.3e-05 24.3 0.1 7.6e-05 22.6 0.0 1.9 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.7 gi|294494693|ref|YP_003541186.1| - 0.059 13.0 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 tRNA_anti-like Radical_SAM PF04055.21 gi|294494694|ref|YP_003541187.1| - 2.3e-18 67.1 0.7 1.6e-17 64.4 0.7 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|294494694|ref|YP_003541187.1| - 1.1e-17 64.1 0.0 1.9e-17 63.3 0.0 1.4 1 0 0 1 1 1 1 Wyosine base formation Hydrolase PF00702.26 gi|294494694|ref|YP_003541187.1| - 0.014 15.7 0.0 0.037 14.3 0.0 1.8 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Fer4_12 PF13353.6 gi|294494694|ref|YP_003541187.1| - 0.014 15.7 0.1 0.059 13.6 0.0 2.0 2 1 0 2 2 2 0 4Fe-4S single cluster domain eRF1_2 PF03464.15 gi|294494695|ref|YP_003541188.1| - 3.1e-41 140.8 0.0 5e-41 140.1 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|294494695|ref|YP_003541188.1| - 7.8e-32 110.1 0.1 4.3e-31 107.7 0.1 2.1 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|294494695|ref|YP_003541188.1| - 1.4e-14 54.1 0.1 3e-14 53.1 0.0 1.6 2 0 0 2 2 2 1 eRF1 domain 1 baeRF_family10 PF18854.1 gi|294494695|ref|YP_003541188.1| - 5.4e-12 46.2 0.0 8.3e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 acVLRF1 PF18859.1 gi|294494695|ref|YP_003541188.1| - 1.4e-11 44.8 0.0 2.4e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor DNA_ligase_ZBD PF03119.16 gi|294494695|ref|YP_003541188.1| - 0.053 13.5 0.3 0.3 11.2 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.14 gi|294494695|ref|YP_003541188.1| - 0.072 12.9 1.5 0.74 9.7 0.0 3.0 3 0 0 3 3 3 0 Rad50 zinc hook motif zf-TFIIB PF13453.6 gi|294494695|ref|YP_003541188.1| - 0.084 12.2 0.1 0.17 11.2 0.1 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.10 gi|294494695|ref|YP_003541188.1| - 0.24 11.6 0.6 6.6 6.9 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain tRNA-synt_1d PF00750.19 gi|294494696|ref|YP_003541189.1| - 6.7e-43 147.0 0.9 9.1e-43 146.5 0.9 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|294494696|ref|YP_003541189.1| - 4.1e-33 114.1 0.0 1.1e-32 112.7 0.0 1.8 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|294494696|ref|YP_003541189.1| - 3.6e-13 49.9 0.2 1.1e-12 48.3 0.2 1.9 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1g PF09334.11 gi|294494696|ref|YP_003541189.1| - 5.8e-06 25.3 0.1 0.016 13.9 0.1 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|294494696|ref|YP_003541189.1| - 0.0001 21.4 0.0 0.37 9.7 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|294494696|ref|YP_003541189.1| - 0.00059 19.3 0.4 0.0014 18.0 0.4 1.7 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 gi|294494696|ref|YP_003541189.1| - 0.0062 14.8 0.0 0.0096 14.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) DUF1294 PF06961.13 gi|294494697|ref|YP_003541190.1| - 2.1e-23 82.3 1.8 2.7e-23 81.9 1.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) URO-D PF01208.17 gi|294494698|ref|YP_003541191.1| - 2.7e-68 230.7 0.0 3.2e-68 230.4 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) SpoIIM PF01944.17 gi|294494700|ref|YP_003541193.1| - 8.3e-11 42.2 20.7 2.3e-09 37.5 20.7 2.7 1 1 0 1 1 1 1 Stage II sporulation protein M ATPase PF06745.13 gi|294494701|ref|YP_003541194.1| - 4.9e-41 140.6 0.0 1e-40 139.6 0.0 1.5 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|294494701|ref|YP_003541194.1| - 1.8e-08 34.2 0.0 0.00026 20.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain DnaB_C PF03796.15 gi|294494701|ref|YP_003541194.1| - 0.00014 21.3 0.0 0.00027 20.4 0.0 1.5 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain PAXNEB PF05625.11 gi|294494701|ref|YP_003541194.1| - 0.00078 18.7 0.8 0.15 11.1 0.4 2.1 2 0 0 2 2 2 2 PAXNEB protein RecA PF00154.21 gi|294494701|ref|YP_003541194.1| - 0.0024 17.4 0.1 0.0037 16.8 0.1 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.11 gi|294494701|ref|YP_003541194.1| - 0.0027 16.4 0.0 0.031 12.9 0.0 2.0 2 0 0 2 2 2 1 GvpD gas vesicle protein Rad51 PF08423.11 gi|294494701|ref|YP_003541194.1| - 0.0028 17.0 0.2 0.015 14.6 0.2 1.9 2 0 0 2 2 2 1 Rad51 AAA_33 PF13671.6 gi|294494701|ref|YP_003541194.1| - 0.018 15.2 0.0 0.036 14.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|294494701|ref|YP_003541194.1| - 0.048 13.7 0.0 0.1 12.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|294494701|ref|YP_003541194.1| - 0.11 12.2 0.1 0.45 10.2 0.1 2.1 1 1 0 1 1 1 0 AAA domain GTP_EFTU_D2 PF03144.25 gi|294494702|ref|YP_003541195.1| - 6.4e-08 32.9 0.1 1.4e-07 31.8 0.1 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU PF00009.27 gi|294494702|ref|YP_003541195.1| - 0.00016 21.3 0.1 0.00049 19.7 0.0 1.8 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|294494702|ref|YP_003541195.1| - 0.011 15.6 0.4 0.023 14.6 0.4 1.6 1 0 0 1 1 1 0 Elongation factor Tu domain 4 MMR_HSR1_Xtn PF16897.5 gi|294494702|ref|YP_003541195.1| - 0.031 14.3 0.4 0.068 13.2 0.0 1.7 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 gi|294494702|ref|YP_003541195.1| - 0.093 12.5 0.2 0.21 11.3 0.2 1.8 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Ldh_1_N PF00056.23 gi|294494702|ref|YP_003541195.1| - 0.096 12.8 0.1 0.27 11.3 0.1 1.8 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain AAA_28 PF13521.6 gi|294494702|ref|YP_003541195.1| - 0.18 12.0 0.1 0.34 11.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain Lig_C PF18330.1 gi|294494703|ref|YP_003541196.1| - 9.8e-46 154.8 0.1 1.6e-45 154.1 0.1 1.4 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|294494703|ref|YP_003541196.1| - 1.6e-17 64.3 0.0 2.7e-17 63.6 0.0 1.4 1 0 0 1 1 1 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|294494703|ref|YP_003541196.1| - 2.6e-07 30.5 0.0 1.7e-05 24.6 0.0 2.3 1 1 0 1 1 1 1 ATP dependent DNA ligase domain CBS PF00571.28 gi|294494704|ref|YP_003541197.1| - 1.1e-38 131.5 8.8 8.4e-11 42.2 0.1 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|294494705|ref|YP_003541198.1| - 1.1e-37 128.2 18.3 2.8e-11 43.7 0.0 4.1 4 0 0 4 4 4 4 CBS domain IF3_N PF05198.16 gi|294494705|ref|YP_003541198.1| - 0.076 13.3 1.8 0.57 10.5 0.1 3.1 3 0 0 3 3 3 0 Translation initiation factor IF-3, N-terminal domain CBS PF00571.28 gi|294494706|ref|YP_003541199.1| - 2.1e-47 159.4 4.6 6e-11 42.6 0.0 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|294494707|ref|YP_003541200.1| - 7.3e-46 154.4 2.9 4.1e-14 52.8 0.0 4.1 4 0 0 4 4 4 4 CBS domain PRC PF05239.16 gi|294494707|ref|YP_003541200.1| - 0.074 13.1 0.1 4.5 7.4 0.0 2.6 2 0 0 2 2 2 0 PRC-barrel domain IF3_N PF05198.16 gi|294494707|ref|YP_003541200.1| - 0.12 12.6 0.7 13 6.2 0.0 3.6 3 1 0 3 3 3 0 Translation initiation factor IF-3, N-terminal domain CBS PF00571.28 gi|294494708|ref|YP_003541201.1| - 1.6e-22 79.7 5.1 2.4e-11 43.9 0.5 2.2 2 0 0 2 2 2 2 CBS domain HATPase_c PF02518.26 gi|294494709|ref|YP_003541202.1| - 7.7e-20 71.5 0.1 2.6e-19 69.8 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|294494709|ref|YP_003541202.1| - 0.00013 21.8 0.2 0.01 15.8 0.1 3.5 3 0 0 3 3 3 1 GHKL domain HATPase_c_2 PF13581.6 gi|294494709|ref|YP_003541202.1| - 0.0011 18.9 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|294494709|ref|YP_003541202.1| - 0.0066 16.1 0.7 0.025 14.3 0.2 2.4 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.6 gi|294494709|ref|YP_003541202.1| - 0.009 15.8 0.0 0.02 14.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Suppressor_P21 PF11479.8 gi|294494709|ref|YP_003541202.1| - 0.023 14.9 0.4 0.054 13.7 0.4 1.6 1 0 0 1 1 1 0 RNA silencing suppressor P21 C-terminal domain ISG65-75 PF11727.8 gi|294494709|ref|YP_003541202.1| - 0.1 11.8 0.3 0.21 10.8 0.3 1.5 1 0 0 1 1 1 0 Invariant surface glycoprotein HisKA_4TM PF16926.5 gi|294494709|ref|YP_003541202.1| - 0.24 11.0 0.1 0.41 10.2 0.1 1.3 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase URO-D PF01208.17 gi|294494710|ref|YP_003541203.1| - 1.3e-62 212.0 0.0 1.5e-62 211.8 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) MT0933_antitox PF14013.6 gi|294494710|ref|YP_003541203.1| - 0.062 13.6 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 MT0933-like antitoxin protein B12-binding PF02310.19 gi|294494711|ref|YP_003541204.1| - 2.2e-09 37.4 0.0 4e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|294494711|ref|YP_003541204.1| - 5.5e-09 36.3 0.2 1.4e-08 35.1 0.1 1.7 2 0 0 2 2 2 1 B12 binding domain DUF2529 PF10740.9 gi|294494711|ref|YP_003541204.1| - 0.038 13.6 0.1 0.17 11.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF2529) Slx4 PF09494.10 gi|294494711|ref|YP_003541204.1| - 0.061 13.3 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 Slx4 endonuclease tRNA_anti-codon PF01336.25 gi|294494712|ref|YP_003541205.1| - 2.3e-29 101.2 7.4 1.2e-11 44.5 0.7 3.3 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|294494712|ref|YP_003541205.1| - 1.9e-15 57.2 0.8 3.4e-06 27.0 0.1 3.2 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 REPA_OB_2 PF16900.5 gi|294494712|ref|YP_003541205.1| - 7.6e-13 48.2 2.3 5.6e-06 26.2 0.3 3.3 3 0 0 3 3 3 3 Replication protein A OB domain DUF3127 PF11325.8 gi|294494712|ref|YP_003541205.1| - 0.008 16.4 0.7 1.2 9.4 0.1 3.4 3 0 0 3 3 3 1 Domain of unknown function (DUF3127) Psb28 PF03912.14 gi|294494712|ref|YP_003541205.1| - 0.015 15.6 0.2 10 6.5 0.0 3.3 3 0 0 3 3 3 0 Psb28 protein Rep_fac-A_C PF08646.10 gi|294494712|ref|YP_003541205.1| - 0.044 13.5 0.0 35 4.1 0.0 3.2 3 0 0 3 3 3 0 Replication factor-A C terminal domain DUF2240 PF09999.9 gi|294494712|ref|YP_003541205.1| - 0.07 12.8 0.1 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2240) DUF4082 PF13313.6 gi|294494712|ref|YP_003541205.1| - 0.15 12.1 0.1 16 5.5 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4082) SHOCT PF09851.9 gi|294494712|ref|YP_003541205.1| - 0.48 10.2 4.6 0.2 11.5 1.5 2.0 2 0 0 2 2 2 0 Short C-terminal domain PTS_2-RNA PF01885.16 gi|294494713|ref|YP_003541206.1| - 2.4e-26 92.9 0.0 3.4e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family DUF952 PF06108.12 gi|294494713|ref|YP_003541206.1| - 0.14 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF952) Toprim_4 PF13662.6 gi|294494714|ref|YP_003541207.1| - 5e-13 49.3 0.3 1.8e-12 47.6 0.3 2.1 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|294494714|ref|YP_003541207.1| - 2e-06 28.1 0.0 5e-06 26.9 0.0 1.7 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|294494714|ref|YP_003541207.1| - 0.0042 17.3 0.1 0.02 15.1 0.1 2.2 1 1 0 1 1 1 1 Toprim domain Ribosomal_L19e PF01280.20 gi|294494714|ref|YP_003541207.1| - 0.087 12.9 1.8 0.29 11.2 0.4 2.3 1 1 1 3 3 3 0 Ribosomal protein L19e DUF3347 PF11827.8 gi|294494715|ref|YP_003541208.1| - 0.0042 17.3 0.1 0.006 16.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3347) DUF1297 PF06973.12 gi|294494716|ref|YP_003541209.1| - 1.5e-55 187.6 0.3 2.1e-55 187.2 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|294494716|ref|YP_003541209.1| - 9.2e-44 148.3 0.0 2.4e-43 147.0 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.14 gi|294494716|ref|YP_003541209.1| - 2.9e-05 24.2 0.0 0.00022 21.3 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|294494716|ref|YP_003541209.1| - 0.0094 15.5 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain HTH_20 PF12840.7 gi|294494717|ref|YP_003541210.1| - 1.2e-07 31.7 0.0 2.6e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|294494717|ref|YP_003541210.1| - 1.1e-06 28.4 0.2 2.1e-06 27.5 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF742 PF05331.11 gi|294494717|ref|YP_003541210.1| - 2e-05 24.3 0.0 3.6e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF742) TrmB PF01978.19 gi|294494717|ref|YP_003541210.1| - 0.00013 21.8 0.0 0.00026 20.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|294494717|ref|YP_003541210.1| - 0.00071 19.1 0.1 0.0013 18.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Dimerisation2 PF16864.5 gi|294494717|ref|YP_003541210.1| - 0.0017 18.3 0.0 0.0042 17.0 0.0 1.6 2 0 0 2 2 2 1 Dimerisation domain HTH_IclR PF09339.10 gi|294494717|ref|YP_003541210.1| - 0.0017 18.1 0.7 0.005 16.6 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|294494717|ref|YP_003541210.1| - 0.058 13.3 0.1 0.1 12.5 0.1 1.4 1 0 0 1 1 1 0 HTH domain CD24 PF14984.6 gi|294494717|ref|YP_003541210.1| - 0.12 12.6 1.2 0.32 11.3 1.2 1.7 1 0 0 1 1 1 0 CD24 protein HTH_27 PF13463.6 gi|294494717|ref|YP_003541210.1| - 0.14 12.6 0.0 0.34 11.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain PseudoU_synth_1 PF01416.20 gi|294494718|ref|YP_003541211.1| - 1.5e-28 99.4 0.0 5.7e-22 78.2 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase DUF45 PF01863.17 gi|294494719|ref|YP_003541212.1| - 1.7e-31 109.9 2.8 1e-27 97.6 3.9 2.2 1 1 1 2 2 2 2 Protein of unknown function DUF45 DUF5580 PF17743.1 gi|294494719|ref|YP_003541212.1| - 0.0046 15.5 0.3 0.005 15.4 0.3 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5580) WLM PF08325.10 gi|294494719|ref|YP_003541212.1| - 0.019 15.0 0.6 0.046 13.8 0.6 1.6 2 0 0 2 2 2 0 WLM domain UPF0020 PF01170.18 gi|294494720|ref|YP_003541213.1| - 8.1e-27 94.2 0.0 4e-26 91.9 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|294494720|ref|YP_003541213.1| - 1.1e-09 38.5 0.0 2e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.6 gi|294494720|ref|YP_003541213.1| - 7.6e-08 32.3 0.0 1.3e-07 31.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|294494720|ref|YP_003541213.1| - 9.2e-08 32.7 0.0 2.5e-07 31.3 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|294494720|ref|YP_003541213.1| - 2.9e-07 31.0 0.0 8.8e-07 29.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|294494720|ref|YP_003541213.1| - 4e-07 30.0 0.0 0.027 14.2 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Cons_hypoth95 PF03602.15 gi|294494720|ref|YP_003541213.1| - 1.2e-06 28.3 0.0 1.9e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|294494720|ref|YP_003541213.1| - 0.00047 19.6 0.0 0.00092 18.6 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.10 gi|294494720|ref|YP_003541213.1| - 0.0021 17.6 0.0 0.0033 17.0 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase AviRa PF11599.8 gi|294494720|ref|YP_003541213.1| - 0.011 15.2 0.0 0.4 10.1 0.0 2.2 1 1 1 2 2 2 0 RRNA methyltransferase AviRa N6_Mtase PF02384.16 gi|294494720|ref|YP_003541213.1| - 0.023 14.0 0.0 0.037 13.3 0.0 1.3 1 0 0 1 1 1 0 N-6 DNA Methylase DUF1805 PF08827.11 gi|294494721|ref|YP_003541214.1| - 1.5e-24 86.1 1.1 2e-24 85.7 1.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) Prenyltrans PF00432.21 gi|294494722|ref|YP_003541215.1| - 2e-12 46.6 0.8 0.016 14.9 0.0 5.5 5 0 0 5 5 5 3 Prenyltransferase and squalene oxidase repeat SQHop_cyclase_C PF13243.6 gi|294494722|ref|YP_003541215.1| - 3.6e-10 39.4 12.0 7.3e-05 22.0 1.2 3.5 2 1 0 3 3 3 3 Squalene-hopene cyclase C-terminal domain SQHop_cyclase_N PF13249.6 gi|294494722|ref|YP_003541215.1| - 0.00072 18.7 0.2 4.5 6.3 0.0 3.3 4 0 0 4 4 4 2 Squalene-hopene cyclase N-terminal domain TED_complement PF07678.14 gi|294494722|ref|YP_003541215.1| - 0.026 13.6 0.2 2.2 7.3 0.0 2.5 3 0 0 3 3 3 0 A-macroglobulin TED domain SVA PF05326.11 gi|294494723|ref|YP_003541216.1| - 0.17 11.9 0.4 16 5.5 0.0 2.3 1 1 1 2 2 2 0 Seminal vesicle autoantigen (SVA) Peptidase_M24 PF00557.24 gi|294494724|ref|YP_003541217.1| - 1.1e-39 136.3 0.0 1.3e-39 136.1 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.24 gi|294494725|ref|YP_003541218.1| - 2.3e-49 167.9 0.7 3e-49 167.5 0.7 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF724 PF05266.14 gi|294494725|ref|YP_003541218.1| - 0.028 14.2 0.1 0.058 13.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF724) NosD PF05048.13 gi|294494726|ref|YP_003541219.1| - 1.1e-66 224.5 174.3 1.9e-30 105.9 39.5 7.5 4 3 3 7 7 7 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|294494726|ref|YP_003541219.1| - 2.9e-37 127.9 189.0 2.4e-17 63.2 47.4 7.6 4 2 2 6 6 6 4 Right handed beta helix region FixG_C PF11614.8 gi|294494726|ref|YP_003541219.1| - 1.5e-09 38.1 18.1 0.045 14.0 0.4 6.5 5 1 1 6 6 6 4 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF1616 PF07760.11 gi|294494726|ref|YP_003541219.1| - 0.0013 18.2 12.2 0.14 11.6 1.0 4.4 1 1 1 3 3 3 2 Protein of unknown function (DUF1616) DUF11 PF01345.18 gi|294494726|ref|YP_003541219.1| - 0.0065 16.8 59.3 0.035 14.4 9.9 7.5 6 2 1 7 7 7 4 Domain of unknown function DUF11 ASH PF15780.5 gi|294494726|ref|YP_003541219.1| - 0.0091 16.2 27.6 0.037 14.2 0.9 7.4 4 1 3 8 8 8 3 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin AbrB-like PF14250.6 gi|294494726|ref|YP_003541219.1| - 1.4 9.1 4.5 2.2e+02 2.0 0.2 5.2 5 1 0 5 5 5 0 AbrB-like transcriptional regulator Trypan_PARP PF05887.11 gi|294494726|ref|YP_003541219.1| - 4.6 7.2 6.4 1.1 9.2 1.6 2.5 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) YmzC PF14157.6 gi|294494726|ref|YP_003541219.1| - 5.9 7.1 8.3 2.4 8.3 0.2 3.8 3 0 0 3 3 3 0 YmzC-like protein malic PF00390.19 gi|294494727|ref|YP_003541220.1| - 0.0088 15.9 0.0 0.0088 15.9 0.0 1.0 1 0 0 1 1 1 1 Malic enzyme, N-terminal domain ArsP_1 PF03773.13 gi|294494728|ref|YP_003541221.1| - 0.0071 15.5 4.2 0.008 15.4 4.2 1.0 1 0 0 1 1 1 1 Predicted permease CAP PF00188.26 gi|294494729|ref|YP_003541222.1| - 2e-15 57.8 0.3 4.4e-15 56.6 0.3 1.6 1 0 0 1 1 1 1 Cysteine-rich secretory protein family BiPBP_C PF06832.12 gi|294494729|ref|YP_003541222.1| - 0.0044 17.0 0.0 0.008 16.2 0.0 1.4 1 0 0 1 1 1 1 Penicillin-Binding Protein C-terminus Family DUF4998 PF16389.5 gi|294494730|ref|YP_003541223.1| - 0.018 14.6 0.1 0.025 14.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function Gp_dh_C PF02800.20 gi|294494730|ref|YP_003541223.1| - 0.035 13.7 0.1 0.058 13.0 0.1 1.3 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VP4_haemagglut PF00426.18 gi|294494730|ref|YP_003541223.1| - 0.044 14.0 0.3 3.4 7.8 0.0 2.2 1 1 1 2 2 2 0 Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain FlgD_ig PF13860.6 gi|294494730|ref|YP_003541223.1| - 0.05 13.5 0.6 1.6 8.7 0.1 3.0 3 1 0 3 3 3 0 FlgD Ig-like domain AglB_L1 PF18079.1 gi|294494730|ref|YP_003541223.1| - 0.062 13.6 0.9 5.2 7.4 0.1 2.7 1 1 0 2 2 2 0 Archaeal glycosylation protein B long peripheral domain Big_7 PF17957.1 gi|294494730|ref|YP_003541223.1| - 6.2 7.7 7.9 13 6.6 0.3 2.7 2 1 0 2 2 2 0 Bacterial Ig domain SBP_bac_5 PF00496.22 gi|294494732|ref|YP_003541225.1| - 9.6e-88 294.7 1.2 1.2e-87 294.4 1.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Methyltransf_11 PF08241.12 gi|294494733|ref|YP_003541226.1| - 6.8e-25 87.5 0.0 1.1e-24 86.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|294494733|ref|YP_003541226.1| - 2.5e-23 82.6 0.0 4.4e-23 81.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|294494733|ref|YP_003541226.1| - 2.5e-23 82.6 0.0 3.1e-23 82.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|294494733|ref|YP_003541226.1| - 2.8e-14 53.0 0.0 5e-14 52.2 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|294494733|ref|YP_003541226.1| - 3.4e-14 53.0 0.0 5.6e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|294494733|ref|YP_003541226.1| - 3.4e-13 50.2 0.0 5.6e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|294494733|ref|YP_003541226.1| - 7.6e-07 29.2 0.0 1.1e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|294494733|ref|YP_003541226.1| - 8.8e-07 28.6 0.0 1.3e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|294494733|ref|YP_003541226.1| - 4.5e-06 26.2 0.0 7.8e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.12 gi|294494733|ref|YP_003541226.1| - 1.7e-05 24.5 0.0 2.5e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.13 gi|294494733|ref|YP_003541226.1| - 8.4e-05 22.1 0.0 0.00011 21.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|294494733|ref|YP_003541226.1| - 0.0001 22.2 0.0 0.00016 21.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|294494733|ref|YP_003541226.1| - 0.00012 21.3 0.0 0.00021 20.5 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.11 gi|294494733|ref|YP_003541226.1| - 0.00068 19.3 0.0 0.00095 18.8 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) PCMT PF01135.19 gi|294494733|ref|YP_003541226.1| - 0.0011 18.8 0.0 0.0014 18.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.11 gi|294494733|ref|YP_003541226.1| - 0.0045 16.0 0.0 0.0064 15.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) RrnaAD PF00398.20 gi|294494733|ref|YP_003541226.1| - 0.0047 16.0 0.0 0.0069 15.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase UPF0020 PF01170.18 gi|294494733|ref|YP_003541226.1| - 0.011 15.4 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 GidB PF02527.15 gi|294494733|ref|YP_003541226.1| - 0.013 14.8 0.0 0.021 14.1 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G 3HCDH_N PF02737.18 gi|294494733|ref|YP_003541226.1| - 0.032 14.1 0.0 0.048 13.5 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TPMT PF05724.11 gi|294494733|ref|YP_003541226.1| - 0.037 13.7 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) UDPG_MGDP_dh_N PF03721.14 gi|294494733|ref|YP_003541226.1| - 0.071 12.7 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CheR PF01739.18 gi|294494733|ref|YP_003541226.1| - 0.19 11.2 0.0 1.4 8.4 0.0 2.0 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain BPD_transp_1 PF00528.22 gi|294494734|ref|YP_003541227.1| - 1.5e-46 158.5 10.0 1.5e-46 158.5 10.0 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Renin_r PF07850.14 gi|294494734|ref|YP_003541227.1| - 3.6 8.2 9.0 0.47 11.1 0.4 3.0 3 0 0 3 3 3 0 Renin receptor-like protein BPD_transp_1 PF00528.22 gi|294494735|ref|YP_003541228.1| - 2.7e-25 89.2 11.1 2.7e-25 89.2 11.1 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|294494735|ref|YP_003541228.1| - 1.3e-05 25.0 0.4 1.3e-05 25.0 0.4 3.9 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|294494736|ref|YP_003541229.1| - 1.7e-25 90.1 0.0 2.4e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|294494736|ref|YP_003541229.1| - 8.5e-13 48.6 1.6 1.7e-12 47.6 1.6 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|294494736|ref|YP_003541229.1| - 5.5e-07 29.2 0.0 9.2e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|294494736|ref|YP_003541229.1| - 2.6e-05 24.2 1.3 0.00021 21.2 0.1 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|294494736|ref|YP_003541229.1| - 0.00018 21.8 0.0 0.00083 19.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|294494736|ref|YP_003541229.1| - 0.0028 17.1 0.0 0.022 14.1 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 gi|294494736|ref|YP_003541229.1| - 0.0073 16.2 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase DUF2075 PF09848.9 gi|294494736|ref|YP_003541229.1| - 0.019 14.3 0.0 0.024 13.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.17 gi|294494736|ref|YP_003541229.1| - 0.021 14.6 0.0 0.63 9.7 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|294494736|ref|YP_003541229.1| - 0.031 14.7 0.0 0.049 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|294494736|ref|YP_003541229.1| - 0.083 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|294494736|ref|YP_003541229.1| - 0.15 12.4 0.0 0.27 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.12 gi|294494736|ref|YP_003541229.1| - 0.16 11.9 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|294494737|ref|YP_003541230.1| - 7.8e-34 117.1 0.0 1.2e-33 116.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|294494737|ref|YP_003541230.1| - 5.4e-10 39.1 0.1 9.8e-10 38.2 0.1 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|294494737|ref|YP_003541230.1| - 2.2e-07 31.2 1.4 2.5e-06 27.8 1.4 2.1 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|294494737|ref|YP_003541230.1| - 1.8e-05 24.5 0.1 0.00086 19.1 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|294494737|ref|YP_003541230.1| - 4.6e-05 23.9 0.1 8.2e-05 23.1 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain TniB PF05621.11 gi|294494737|ref|YP_003541230.1| - 6.5e-05 22.4 1.2 0.12 11.7 0.4 2.5 1 1 0 2 2 2 2 Bacterial TniB protein oligo_HPY PF08352.12 gi|294494737|ref|YP_003541230.1| - 7e-05 23.3 0.0 0.00017 22.0 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|294494737|ref|YP_003541230.1| - 9.8e-05 22.3 2.2 0.11 12.3 1.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ATPase PF06745.13 gi|294494737|ref|YP_003541230.1| - 0.00011 21.7 0.8 0.03 13.7 0.0 2.8 3 0 0 3 3 3 1 KaiC AAA PF00004.29 gi|294494737|ref|YP_003541230.1| - 0.00023 21.6 1.5 0.0052 17.2 1.5 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.25 gi|294494737|ref|YP_003541230.1| - 0.00034 20.3 0.0 0.00035 20.3 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activat PF00158.26 gi|294494737|ref|YP_003541230.1| - 0.0006 19.5 0.1 0.0096 15.6 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.12 gi|294494737|ref|YP_003541230.1| - 0.0014 18.6 0.2 0.0038 17.2 0.0 1.8 2 1 0 2 2 2 1 NACHT domain RsgA_GTPase PF03193.16 gi|294494737|ref|YP_003541230.1| - 0.0014 18.5 0.0 0.0029 17.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|294494737|ref|YP_003541230.1| - 0.0016 18.9 0.4 0.0033 18.0 0.4 1.7 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|294494737|ref|YP_003541230.1| - 0.0048 16.8 1.1 2.7 7.9 0.1 2.2 2 0 0 2 2 2 2 NTPase AAA_25 PF13481.6 gi|294494737|ref|YP_003541230.1| - 0.0078 15.8 1.0 0.52 9.8 0.0 2.5 2 1 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|294494737|ref|YP_003541230.1| - 0.0084 15.3 0.1 0.021 14.0 0.0 1.6 2 1 0 1 1 1 1 NB-ARC domain AAA_5 PF07728.14 gi|294494737|ref|YP_003541230.1| - 0.0087 16.1 0.3 0.13 12.2 0.0 2.4 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) PRK PF00485.18 gi|294494737|ref|YP_003541230.1| - 0.009 15.8 0.0 0.013 15.3 0.0 1.3 1 1 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.23 gi|294494737|ref|YP_003541230.1| - 0.012 15.7 0.4 0.059 13.4 0.4 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase ResIII PF04851.15 gi|294494737|ref|YP_003541230.1| - 0.015 15.3 0.1 0.13 12.3 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_15 PF13175.6 gi|294494737|ref|YP_003541230.1| - 0.016 14.9 0.0 0.03 14.1 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain ATPase_2 PF01637.18 gi|294494737|ref|YP_003541230.1| - 0.018 14.9 0.7 0.044 13.7 0.7 1.8 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|294494737|ref|YP_003541230.1| - 0.019 15.3 0.7 0.068 13.5 0.7 1.8 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|294494737|ref|YP_003541230.1| - 0.022 14.5 0.1 0.052 13.3 0.0 1.7 2 0 0 2 2 1 0 AAA domain G-alpha PF00503.20 gi|294494737|ref|YP_003541230.1| - 0.023 13.8 0.1 0.047 12.9 0.1 1.5 1 1 0 1 1 1 0 G-protein alpha subunit PhoH PF02562.16 gi|294494737|ref|YP_003541230.1| - 0.025 14.0 0.0 0.047 13.1 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_29 PF13555.6 gi|294494737|ref|YP_003541230.1| - 0.031 14.0 0.0 0.059 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SSE PF00437.20 gi|294494737|ref|YP_003541230.1| - 0.034 13.2 0.1 0.25 10.4 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein MobB PF03205.14 gi|294494737|ref|YP_003541230.1| - 0.037 13.9 0.0 0.11 12.4 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Rad17 PF03215.15 gi|294494737|ref|YP_003541230.1| - 0.047 13.6 0.0 0.09 12.7 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|294494737|ref|YP_003541230.1| - 0.059 13.8 0.0 0.13 12.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Sigma54_activ_2 PF14532.6 gi|294494737|ref|YP_003541230.1| - 0.059 13.5 0.1 0.45 10.6 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|294494737|ref|YP_003541230.1| - 0.061 12.7 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.9 gi|294494737|ref|YP_003541230.1| - 0.081 12.7 0.3 0.21 11.3 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_30 PF13604.6 gi|294494737|ref|YP_003541230.1| - 0.094 12.4 0.0 1.7 8.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain Roc PF08477.13 gi|294494737|ref|YP_003541230.1| - 0.15 12.3 0.1 0.33 11.2 0.1 1.7 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Fer4_7 PF12838.7 gi|294494738|ref|YP_003541231.1| - 2.5e-05 24.8 9.6 4.8e-05 23.9 9.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294494738|ref|YP_003541231.1| - 9.7e-05 23.2 10.7 9.7e-05 23.2 10.7 2.1 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|294494738|ref|YP_003541231.1| - 0.00068 19.7 12.4 0.0075 16.4 13.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|294494738|ref|YP_003541231.1| - 0.0021 17.8 15.9 0.009 15.8 2.5 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|294494738|ref|YP_003541231.1| - 0.0037 17.3 13.8 0.1 12.7 0.3 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|294494738|ref|YP_003541231.1| - 0.011 15.9 11.6 0.27 11.4 0.5 3.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294494738|ref|YP_003541231.1| - 0.22 11.7 13.3 0.26 11.5 2.3 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|294494738|ref|YP_003541231.1| - 0.74 10.3 11.0 12 6.4 11.5 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294494738|ref|YP_003541231.1| - 1.7 8.9 15.2 2.1 8.6 3.3 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain SdrD_B PF17210.3 gi|294494739|ref|YP_003541232.1| - 7.6e-31 106.6 4.6 7.6e-31 106.6 4.6 2.8 4 0 0 4 4 4 1 SdrD B-like domain CarboxypepD_reg PF13620.6 gi|294494739|ref|YP_003541232.1| - 1.2e-06 28.6 3.4 3.3e-06 27.3 0.1 3.1 4 0 0 4 4 4 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|294494739|ref|YP_003541232.1| - 0.011 15.7 1.2 0.046 13.7 0.1 2.5 3 0 0 3 3 3 0 CarboxypepD_reg-like domain TTR-52 PF01060.23 gi|294494739|ref|YP_003541232.1| - 0.024 15.3 0.1 0.41 11.4 0.0 2.7 2 0 0 2 2 2 0 Transthyretin-like family bMG3 PF11974.8 gi|294494739|ref|YP_003541232.1| - 0.062 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain TED PF08341.11 gi|294494739|ref|YP_003541232.1| - 1.2 9.5 10.4 0.12 12.7 5.1 2.0 2 0 0 2 2 2 0 Thioester domain DUF11 PF01345.18 gi|294494739|ref|YP_003541232.1| - 2.8 8.3 13.8 31 5.0 0.4 3.4 2 1 0 2 2 2 0 Domain of unknown function DUF11 Xan_ur_permease PF00860.20 gi|294494740|ref|YP_003541233.1| - 3e-38 131.5 47.9 4.3e-38 131.0 47.9 1.3 1 0 0 1 1 1 1 Permease family NTP_transferase PF00483.23 gi|294494741|ref|YP_003541234.1| - 2.2e-41 142.1 0.1 2.7e-41 141.8 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|294494741|ref|YP_003541234.1| - 1.3e-19 69.1 9.9 5.2e-09 35.5 0.9 5.0 3 2 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|294494741|ref|YP_003541234.1| - 1.9e-15 57.6 0.0 2.6e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|294494741|ref|YP_003541234.1| - 1.8e-10 40.4 19.3 2.7e-05 23.8 0.9 4.5 3 1 1 5 5 5 4 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|294494741|ref|YP_003541234.1| - 3.7e-06 26.9 0.1 5.8e-06 26.2 0.1 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.12 gi|294494741|ref|YP_003541234.1| - 0.0023 16.9 2.1 0.69 8.8 0.1 2.8 2 1 1 3 3 3 2 L-fucokinase SIS PF01380.22 gi|294494742|ref|YP_003541235.1| - 4.5e-60 201.2 1.7 2.4e-29 101.8 0.6 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|294494742|ref|YP_003541235.1| - 8.8e-20 71.3 0.0 2.4e-19 69.9 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|294494742|ref|YP_003541235.1| - 2e-14 53.6 0.0 4.1e-14 52.6 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|294494742|ref|YP_003541235.1| - 4.4e-05 22.5 0.0 8.1e-05 21.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II PGM_PMM_I PF02878.16 gi|294494743|ref|YP_003541236.1| - 3e-36 124.2 0.1 6.9e-36 123.0 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|294494743|ref|YP_003541236.1| - 3.3e-27 95.1 0.0 7.1e-27 94.0 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|294494743|ref|YP_003541236.1| - 1.6e-18 67.0 0.0 2.8e-18 66.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|294494743|ref|YP_003541236.1| - 7.1e-13 48.5 0.1 1.5e-12 47.5 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain NTP_transferase PF00483.23 gi|294494744|ref|YP_003541237.1| - 4.9e-46 157.3 0.0 6.6e-46 156.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|294494744|ref|YP_003541237.1| - 5e-15 56.2 0.0 6.8e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|294494744|ref|YP_003541237.1| - 1.4e-12 46.8 22.3 9e-08 31.6 3.5 4.8 2 1 2 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|294494744|ref|YP_003541237.1| - 1.5e-06 27.8 2.9 1.5e-06 27.8 2.9 5.1 5 0 0 5 5 5 1 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|294494744|ref|YP_003541237.1| - 0.0013 18.5 0.0 0.0045 16.8 0.0 1.8 2 1 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|294494744|ref|YP_003541237.1| - 0.013 13.7 2.2 0.026 12.7 2.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) CTP_transf_3 PF02348.19 gi|294494744|ref|YP_003541237.1| - 0.027 14.4 0.0 0.044 13.7 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase Smr PF01713.21 gi|294494744|ref|YP_003541237.1| - 0.67 10.3 3.3 3 8.3 0.0 2.8 3 0 0 3 3 3 0 Smr domain TrkH PF02386.16 gi|294494745|ref|YP_003541238.1| - 4e-67 226.8 23.2 1.1e-66 225.4 23.2 1.6 1 1 0 1 1 1 1 Cation transport protein DUF433 PF04255.14 gi|294494746|ref|YP_003541239.1| - 2e-24 85.2 0.0 2.4e-24 84.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF433) YtxC PF08812.11 gi|294494746|ref|YP_003541239.1| - 0.12 12.0 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 YtxC-like family DUF5615 PF18480.1 gi|294494747|ref|YP_003541240.1| - 4.4e-10 39.2 0.0 5.7e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) LysE PF01810.18 gi|294494748|ref|YP_003541241.1| - 2.3e-18 66.3 7.2 2.8e-18 66.1 7.2 1.1 1 0 0 1 1 1 1 LysE type translocator Claudin_2 PF13903.6 gi|294494748|ref|YP_003541241.1| - 0.055 13.2 3.5 0.86 9.3 0.8 2.2 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction OrfB_IS605 PF01385.19 gi|294494752|ref|YP_003541245.1| - 4e-26 91.6 1.6 8.3e-26 90.6 0.9 1.8 1 1 1 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|294494752|ref|YP_003541245.1| - 4.3e-21 74.6 1.3 8.5e-21 73.7 1.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|294494752|ref|YP_003541245.1| - 3.6e-19 68.0 2.1 8.4e-19 66.8 2.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain zf-piccolo PF05715.13 gi|294494752|ref|YP_003541245.1| - 0.0019 18.3 2.0 0.0046 17.1 2.0 1.6 1 0 0 1 1 1 1 Piccolo Zn-finger M_domain PF12938.7 gi|294494752|ref|YP_003541245.1| - 0.024 14.5 2.7 0.039 13.7 2.7 1.3 1 0 0 1 1 1 0 M domain of GW182 Zn_Tnp_IS91 PF14319.6 gi|294494752|ref|YP_003541245.1| - 0.033 14.2 1.5 0.08 13.0 1.5 1.7 1 0 0 1 1 1 0 Transposase zinc-binding domain HypA PF01155.19 gi|294494752|ref|YP_003541245.1| - 0.085 12.9 0.7 0.21 11.6 0.4 1.9 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|294494752|ref|YP_003541245.1| - 0.41 10.8 2.4 16 5.7 2.4 2.5 1 1 0 1 1 1 0 Zinc ribbon domain zf-Sec23_Sec24 PF04810.15 gi|294494752|ref|YP_003541245.1| - 1.2 9.2 6.5 7.9 6.6 0.6 3.0 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger zinc_ribbon_2 PF13240.6 gi|294494752|ref|YP_003541245.1| - 3.6 7.4 5.9 3.2 7.6 0.3 2.7 3 0 0 3 3 3 0 zinc-ribbon domain Rubredoxin PF00301.20 gi|294494752|ref|YP_003541245.1| - 9.2 6.4 7.0 1.6 8.8 0.6 2.7 3 0 0 3 3 3 0 Rubredoxin zf-RanBP PF00641.18 gi|294494752|ref|YP_003541245.1| - 9.4 5.7 9.0 6 6.3 1.1 2.6 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others MIG-14_Wnt-bd PF06664.12 gi|294494753|ref|YP_003541246.1| - 0.079 12.2 3.9 0.13 11.5 3.9 1.3 1 0 0 1 1 1 0 Wnt-binding factor required for Wnt secretion DctQ PF04290.12 gi|294494753|ref|YP_003541246.1| - 0.14 12.1 4.5 0.22 11.4 4.5 1.3 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component TRIQK PF15168.6 gi|294494753|ref|YP_003541246.1| - 3.5 7.6 6.4 1.3 9.0 3.5 1.8 1 1 1 2 2 2 0 Triple QxxK/R motif-containing protein family Epimerase PF01370.21 gi|294494754|ref|YP_003541247.1| - 0.031 13.7 0.0 0.032 13.7 0.0 1.0 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Rubrerythrin PF02915.17 gi|294494755|ref|YP_003541248.1| - 5.2e-33 114.3 6.5 6.5e-33 114.0 6.5 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|294494755|ref|YP_003541248.1| - 1.2e-10 41.5 3.0 1.6e-10 41.1 3.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain HypA PF01155.19 gi|294494755|ref|YP_003541248.1| - 0.0023 17.9 0.4 0.0042 17.1 0.4 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Bac_luciferase PF00296.20 gi|294494755|ref|YP_003541248.1| - 0.086 12.3 0.3 0.11 11.9 0.3 1.1 1 0 0 1 1 1 0 Luciferase-like monooxygenase zinc_ribbon_10 PF10058.9 gi|294494755|ref|YP_003541248.1| - 0.12 12.2 0.2 0.12 12.2 0.2 2.3 3 0 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein SIMPL PF04402.14 gi|294494756|ref|YP_003541249.1| - 5e-51 174.0 4.9 5.9e-51 173.8 4.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) YbaB_DNA_bd PF02575.16 gi|294494756|ref|YP_003541249.1| - 0.012 15.8 3.2 0.21 11.8 3.2 2.5 1 1 0 1 1 1 0 YbaB/EbfC DNA-binding family DUF2238 PF09997.9 gi|294494757|ref|YP_003541250.1| - 0.00032 20.5 1.7 0.00032 20.5 1.7 5.3 1 1 3 4 4 4 2 Predicted membrane protein (DUF2238) DUF1206 PF06724.11 gi|294494757|ref|YP_003541250.1| - 0.43 10.7 4.8 0.86 9.7 0.0 3.8 4 0 0 4 4 4 0 Domain of Unknown Function (DUF1206) Na_Ca_ex PF01699.24 gi|294494758|ref|YP_003541251.1| - 0.0057 16.6 9.0 0.0065 16.4 9.0 1.1 1 0 0 1 1 1 1 Sodium/calcium exchanger protein DUF4870 PF09685.10 gi|294494758|ref|YP_003541251.1| - 0.016 15.3 6.4 0.022 14.9 6.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4870) NPCC PF08058.11 gi|294494758|ref|YP_003541251.1| - 0.13 12.3 0.6 0.19 11.8 0.3 1.5 1 1 0 1 1 1 0 Nuclear pore complex component DUF2812 PF11193.8 gi|294494759|ref|YP_003541252.1| - 0.002 18.3 0.4 1.3 9.2 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2812) MqsA_antitoxin PF15731.5 gi|294494760|ref|YP_003541253.1| - 0.016 15.3 0.5 0.018 15.1 0.5 1.0 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Mut7-C PF01927.16 gi|294494760|ref|YP_003541253.1| - 0.023 14.8 0.5 0.024 14.8 0.5 1.0 1 0 0 1 1 1 0 Mut7-C RNAse domain zf-C4_ClpX PF06689.13 gi|294494760|ref|YP_003541253.1| - 0.25 11.3 4.1 4.6 7.2 0.1 2.2 2 0 0 2 2 2 0 ClpX C4-type zinc finger YdjM PF04307.14 gi|294494761|ref|YP_003541254.1| - 2.3e-17 62.9 7.4 2.8e-17 62.6 7.4 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase MscS_TM PF12794.7 gi|294494761|ref|YP_003541254.1| - 0.0032 16.4 1.2 0.0049 15.8 1.2 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel inner membrane domain 1 Ycf66_N PF07444.11 gi|294494761|ref|YP_003541254.1| - 3.8 7.7 8.7 3.4 7.8 2.0 2.7 3 0 0 3 3 3 0 Ycf66 protein N-terminus Lectin_like PF18560.1 gi|294494762|ref|YP_003541255.1| - 2.6e-55 186.9 7.1 4e-54 183.0 1.5 2.5 2 0 0 2 2 2 2 Lectin like domain Peptidase_C1 PF00112.23 gi|294494762|ref|YP_003541255.1| - 1.1e-26 94.2 0.1 2.4e-26 93.2 0.1 1.5 1 0 0 1 1 1 1 Papain family cysteine protease DUF4082 PF13313.6 gi|294494762|ref|YP_003541255.1| - 0.00032 20.8 0.3 0.0046 17.0 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4082) DUF2846 PF11008.8 gi|294494762|ref|YP_003541255.1| - 0.0019 18.2 0.4 2 8.5 0.1 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF2846) Peptidase_C1_2 PF03051.15 gi|294494762|ref|YP_003541255.1| - 0.0073 15.1 0.2 1.9 7.2 0.1 2.2 2 0 0 2 2 2 2 Peptidase C1-like family fn3 PF00041.21 gi|294494762|ref|YP_003541255.1| - 0.019 15.3 8.2 0.12 12.8 0.1 3.5 2 2 0 2 2 2 0 Fibronectin type III domain ParE_toxin PF05016.15 gi|294494763|ref|YP_003541256.1| - 1.7e-07 31.7 0.1 1.9e-07 31.6 0.1 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE Gp49 PF05973.14 gi|294494763|ref|YP_003541256.1| - 0.0044 17.1 0.0 0.0057 16.8 0.0 1.1 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) DUF2119 PF09892.9 gi|294494764|ref|YP_003541257.1| - 0.041 13.3 0.1 0.041 13.3 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2119) PCMT PF01135.19 gi|294494764|ref|YP_003541257.1| - 0.091 12.5 0.1 0.098 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) VAPB_antitox PF02697.14 gi|294494765|ref|YP_003541258.1| - 4.4e-05 24.2 2.4 0.00011 22.9 2.4 1.8 1 1 0 1 1 1 1 Putative antitoxin Fe-ADH PF00465.19 gi|294494765|ref|YP_003541258.1| - 0.036 12.9 0.1 0.038 12.8 0.1 1.0 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase DUF1160 PF06648.11 gi|294494765|ref|YP_003541258.1| - 0.076 13.0 0.2 0.082 12.9 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1160) DUF919 PF06034.11 gi|294494765|ref|YP_003541258.1| - 0.097 12.5 2.6 1.5 8.7 0.1 2.4 1 1 1 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) Toprim_2 PF13155.6 gi|294494765|ref|YP_003541258.1| - 0.11 12.9 0.0 0.13 12.7 0.0 1.1 1 0 0 1 1 1 0 Toprim-like ParE_toxin PF05016.15 gi|294494766|ref|YP_003541259.1| - 9e-07 29.4 0.1 1.1e-06 29.2 0.1 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|294494766|ref|YP_003541259.1| - 0.00093 19.1 0.6 0.0016 18.3 0.6 1.4 1 1 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system HHH_4 PF14490.6 gi|294494766|ref|YP_003541259.1| - 0.086 12.8 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix containing domain Lectin_like PF18560.1 gi|294494767|ref|YP_003541260.1| - 5.1e-57 192.4 4.6 5.1e-57 192.4 4.6 2.2 2 0 0 2 2 2 1 Lectin like domain NosD PF05048.13 gi|294494767|ref|YP_003541260.1| - 2.1e-36 125.4 46.9 5e-31 107.8 25.1 4.6 4 1 1 5 5 5 2 Periplasmic copper-binding protein (NosD) Peptidase_C1 PF00112.23 gi|294494767|ref|YP_003541260.1| - 2.9e-26 92.9 0.3 6.7e-26 91.7 0.3 1.7 1 0 0 1 1 1 1 Papain family cysteine protease Beta_helix PF13229.6 gi|294494767|ref|YP_003541260.1| - 9.9e-18 64.5 48.6 4.6e-11 42.8 18.3 4.9 3 2 1 4 4 4 2 Right handed beta helix region PKD PF00801.20 gi|294494767|ref|YP_003541260.1| - 1.7e-10 40.6 1.1 6.1e-10 38.8 1.1 2.1 1 0 0 1 1 1 1 PKD domain Peptidase_C1_2 PF03051.15 gi|294494767|ref|YP_003541260.1| - 0.014 14.2 0.1 0.47 9.2 0.1 2.2 2 0 0 2 2 2 0 Peptidase C1-like family Epimerase PF01370.21 gi|294494768|ref|YP_003541261.1| - 1.1e-54 185.5 0.0 1.3e-54 185.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|294494768|ref|YP_003541261.1| - 4.2e-46 157.9 0.0 6.6e-46 157.2 0.0 1.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|294494768|ref|YP_003541261.1| - 9.1e-25 87.2 0.0 1.2e-24 86.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|294494768|ref|YP_003541261.1| - 3e-19 69.3 0.0 3e-18 66.0 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|294494768|ref|YP_003541261.1| - 8.1e-16 58.0 0.0 1e-15 57.6 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|294494768|ref|YP_003541261.1| - 6e-12 45.8 0.0 9e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|294494768|ref|YP_003541261.1| - 9.6e-12 44.6 0.2 1.8e-09 37.2 0.2 2.7 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.13 gi|294494768|ref|YP_003541261.1| - 4.4e-07 29.7 0.0 6.3e-06 25.9 0.0 2.0 2 0 0 2 2 2 1 NmrA-like family adh_short PF00106.25 gi|294494768|ref|YP_003541261.1| - 8.3e-07 28.6 0.0 3.4e-05 23.4 0.0 2.2 2 0 0 2 2 2 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|294494768|ref|YP_003541261.1| - 0.009 16.3 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|294494768|ref|YP_003541261.1| - 0.043 13.7 0.1 0.24 11.3 0.1 1.9 1 1 0 1 1 1 0 KR domain NAD_binding_2 PF03446.15 gi|294494768|ref|YP_003541261.1| - 0.096 12.9 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|294494768|ref|YP_003541261.1| - 0.13 12.5 0.0 0.24 11.7 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain MannoseP_isomer PF01050.18 gi|294494769|ref|YP_003541262.1| - 4.4e-58 195.5 0.8 7.2e-58 194.8 0.8 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.23 gi|294494769|ref|YP_003541262.1| - 7.6e-55 186.2 0.0 2.2e-54 184.7 0.0 1.7 2 0 0 2 2 2 1 Nucleotidyl transferase Cupin_2 PF07883.11 gi|294494769|ref|YP_003541262.1| - 5.2e-11 42.1 0.3 8.7e-11 41.4 0.3 1.4 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.7 gi|294494769|ref|YP_003541262.1| - 2.4e-07 31.2 0.0 4.8e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain AraC_binding PF02311.19 gi|294494769|ref|YP_003541262.1| - 0.0082 16.1 0.1 0.016 15.1 0.1 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain IspD PF01128.19 gi|294494769|ref|YP_003541262.1| - 0.011 15.4 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF3046 PF11248.8 gi|294494769|ref|YP_003541262.1| - 0.18 12.2 0.0 0.39 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3046) GDP_Man_Dehyd PF16363.5 gi|294494770|ref|YP_003541263.1| - 3.1e-165 549.5 0.0 3.5e-165 549.3 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|294494770|ref|YP_003541263.1| - 8.8e-78 261.1 0.0 1e-77 260.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|294494770|ref|YP_003541263.1| - 8.6e-06 25.0 0.0 1.3e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|294494770|ref|YP_003541263.1| - 4.1e-05 22.9 0.0 5.9e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|294494771|ref|YP_003541264.1| - 1.2e-22 80.7 26.9 1.2e-22 80.7 26.9 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|294494771|ref|YP_003541264.1| - 1.3e-14 54.5 7.2 1.3e-14 54.5 7.2 4.8 2 1 2 5 5 5 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|294494771|ref|YP_003541264.1| - 1.8e-13 50.3 19.2 1.8e-13 50.3 19.2 2.0 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|294494771|ref|YP_003541264.1| - 0.0011 18.7 10.8 0.0011 18.7 10.8 3.7 4 2 0 4 4 4 1 MatE Methyltransf_21 PF05050.12 gi|294494772|ref|YP_003541265.1| - 2.1e-16 60.4 0.1 2.9e-16 60.0 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Sulfotransfer_1 PF00685.27 gi|294494773|ref|YP_003541266.1| - 8.3e-21 74.7 0.4 4.2e-20 72.4 0.4 1.9 1 1 0 1 1 1 1 Sulfotransferase domain Sulfotransfer_3 PF13469.6 gi|294494773|ref|YP_003541266.1| - 6e-08 33.3 0.8 3.6e-06 27.5 0.1 2.2 1 1 0 2 2 2 2 Sulfotransferase family Methyltransf_21 PF05050.12 gi|294494774|ref|YP_003541267.1| - 8.9e-13 48.6 0.3 1.3e-12 48.1 0.3 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_22 PF13383.6 gi|294494774|ref|YP_003541267.1| - 7.3e-10 38.8 0.9 2e-09 37.4 0.9 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|294494774|ref|YP_003541267.1| - 0.1 12.4 0.0 0.4 10.5 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain NusG PF02357.19 gi|294494774|ref|YP_003541267.1| - 0.12 12.9 0.2 0.16 12.5 0.2 1.4 1 1 0 1 1 1 0 Transcription termination factor nusG Glycos_transf_2 PF00535.26 gi|294494775|ref|YP_003541268.1| - 2e-07 30.9 0.1 3.6e-07 30.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 GNT-I PF03071.15 gi|294494775|ref|YP_003541268.1| - 9e-07 28.0 1.1 1.5e-06 27.3 1.1 1.4 1 0 0 1 1 1 1 GNT-I family Glycos_transf_1 PF00534.20 gi|294494776|ref|YP_003541269.1| - 2.4e-22 79.3 0.0 6e-22 78.0 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|294494776|ref|YP_003541269.1| - 7.6e-22 78.2 0.0 1.4e-21 77.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|294494776|ref|YP_003541269.1| - 4.5e-19 69.1 0.0 1.1e-18 67.8 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|294494776|ref|YP_003541269.1| - 7.8e-08 32.6 0.0 1.4e-07 31.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|294494776|ref|YP_003541269.1| - 4.6e-06 27.2 0.0 7.7e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|294494776|ref|YP_003541269.1| - 0.0076 16.3 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_20 PF00982.21 gi|294494776|ref|YP_003541269.1| - 0.015 14.0 0.0 0.022 13.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 20 DNA_pol3_delta PF06144.13 gi|294494776|ref|YP_003541269.1| - 0.1 12.3 0.1 0.17 11.6 0.1 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit Epimerase PF01370.21 gi|294494777|ref|YP_003541270.1| - 5.1e-83 278.2 0.0 6.1e-83 278.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|294494777|ref|YP_003541270.1| - 2.3e-21 76.5 0.0 1e-20 74.4 0.0 1.9 1 1 1 2 2 2 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|294494777|ref|YP_003541270.1| - 1.8e-08 33.9 0.0 4.6e-08 32.5 0.0 1.9 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|294494777|ref|YP_003541270.1| - 5.5e-07 29.0 0.0 4.8e-05 22.6 0.0 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NmrA PF05368.13 gi|294494777|ref|YP_003541270.1| - 0.0042 16.7 0.1 0.064 12.8 0.0 2.2 1 1 1 2 2 2 1 NmrA-like family NAD_binding_10 PF13460.6 gi|294494777|ref|YP_003541270.1| - 0.023 14.6 0.0 0.04 13.8 0.0 1.5 1 1 0 1 1 1 0 NAD(P)H-binding Glycos_transf_2 PF00535.26 gi|294494778|ref|YP_003541271.1| - 3.4e-30 105.1 0.6 5e-30 104.5 0.6 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|294494778|ref|YP_003541271.1| - 1.3e-10 41.6 0.0 2.1e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|294494778|ref|YP_003541271.1| - 2.3e-09 37.1 1.4 1.7e-08 34.3 1.4 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.20 gi|294494779|ref|YP_003541272.1| - 4e-37 127.4 0.1 8.4e-37 126.3 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|294494779|ref|YP_003541272.1| - 2.4e-27 96.0 0.0 6.1e-27 94.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|294494779|ref|YP_003541272.1| - 2.6e-18 66.6 0.0 5.5e-17 62.3 0.1 2.2 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|294494779|ref|YP_003541272.1| - 9.4e-09 35.9 0.0 1.5e-08 35.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|294494779|ref|YP_003541272.1| - 5.7e-08 32.9 0.1 1.9e-07 31.2 0.1 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like DUF3492 PF11997.8 gi|294494779|ref|YP_003541272.1| - 0.00024 21.0 0.2 0.00067 19.5 0.2 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF3492) Glyco_trans_1_2 PF13524.6 gi|294494779|ref|YP_003541272.1| - 0.0029 18.0 0.0 0.039 14.4 0.0 2.5 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyoxalase_2 PF12681.7 gi|294494779|ref|YP_003541272.1| - 0.0048 16.8 0.5 0.82 9.6 0.0 3.1 3 0 0 3 3 3 1 Glyoxalase-like domain DDE_Tnp_1 PF01609.21 gi|294494780|ref|YP_003541273.1| - 1.2e-06 28.3 0.0 1.5e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|294494780|ref|YP_003541273.1| - 0.0011 19.3 3.6 1.3 9.5 0.3 3.0 2 1 1 3 3 3 2 Transposase DDE domain Glycos_transf_2 PF00535.26 gi|294494781|ref|YP_003541274.1| - 5e-23 81.7 0.1 7.4e-23 81.2 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|294494781|ref|YP_003541274.1| - 2.1e-10 40.9 0.0 2.3e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|294494781|ref|YP_003541274.1| - 3.2e-06 26.8 0.8 1.4e-05 24.8 0.2 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 DUF4116 PF13475.6 gi|294494781|ref|YP_003541274.1| - 0.008 15.9 0.8 0.036 13.8 0.1 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4116) Glyco_tranf_2_4 PF13704.6 gi|294494781|ref|YP_003541274.1| - 0.03 14.8 0.0 0.055 14.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 PMT_2 PF13231.6 gi|294494782|ref|YP_003541275.1| - 5.1e-08 33.3 24.4 5.1e-08 33.3 24.4 5.4 4 2 1 6 6 6 2 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF354 PF04007.12 gi|294494783|ref|YP_003541276.1| - 1.8e-19 70.0 0.5 2.2e-19 69.7 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glycos_transf_2 PF00535.26 gi|294494784|ref|YP_003541277.1| - 1.5e-21 76.9 0.0 2.2e-21 76.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|294494784|ref|YP_003541277.1| - 9.6e-07 28.9 0.0 1.9e-06 27.9 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|294494784|ref|YP_003541277.1| - 0.00053 19.5 0.1 0.01 15.3 0.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Peptidase_U4 PF03419.13 gi|294494784|ref|YP_003541277.1| - 0.00068 19.0 0.6 0.00094 18.6 0.6 1.1 1 0 0 1 1 1 1 Sporulation factor SpoIIGA Acetyltransf_CG PF14542.6 gi|294494784|ref|YP_003541277.1| - 0.00079 19.5 0.0 0.0019 18.3 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase ETF PF01012.21 gi|294494784|ref|YP_003541277.1| - 0.096 12.6 0.1 6.4 6.6 0.2 2.1 1 1 1 2 2 2 0 Electron transfer flavoprotein domain S1_2 PF13509.6 gi|294494785|ref|YP_003541278.1| - 0.0011 19.0 0.0 0.0016 18.5 0.0 1.2 1 0 0 1 1 1 1 S1 domain PemK_toxin PF02452.17 gi|294494786|ref|YP_003541279.1| - 9.8e-11 42.0 0.1 1.1e-10 41.9 0.1 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system TrmB PF01978.19 gi|294494787|ref|YP_003541280.1| - 1.1e-10 41.3 0.1 1.2e-06 28.3 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|294494787|ref|YP_003541280.1| - 2e-10 40.4 0.1 2.6e-06 27.2 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|294494787|ref|YP_003541280.1| - 6.1e-10 39.0 0.0 3.2e-05 23.9 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|294494787|ref|YP_003541280.1| - 5.9e-09 35.6 0.9 0.00012 21.8 0.4 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|294494787|ref|YP_003541280.1| - 2.3e-08 33.8 0.9 0.0037 17.2 0.1 2.5 2 0 0 2 2 2 2 MarR family HTH_27 PF13463.6 gi|294494787|ref|YP_003541280.1| - 2.3e-08 34.4 0.3 2.9e-05 24.5 0.1 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|294494787|ref|YP_003541280.1| - 2.3e-08 33.4 0.6 0.00089 18.8 0.1 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|294494787|ref|YP_003541280.1| - 1.2e-07 31.6 1.5 0.01 15.8 0.1 3.1 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_IclR PF09339.10 gi|294494787|ref|YP_003541280.1| - 5.2e-07 29.4 0.0 0.0041 16.9 0.0 2.3 2 0 0 2 2 2 2 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|294494787|ref|YP_003541280.1| - 2.4e-05 24.6 0.6 0.061 13.7 0.1 2.6 2 0 0 2 2 2 2 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|294494787|ref|YP_003541280.1| - 3.2e-05 23.8 0.3 0.25 11.3 0.1 2.3 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain DUF4423 PF14394.6 gi|294494787|ref|YP_003541280.1| - 3.7e-05 23.5 0.1 0.0013 18.5 0.1 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) HTH_40 PF14493.6 gi|294494787|ref|YP_003541280.1| - 4.5e-05 23.8 0.4 0.038 14.4 0.0 2.7 3 0 0 3 3 2 1 Helix-turn-helix domain GntR PF00392.21 gi|294494787|ref|YP_003541280.1| - 6.6e-05 22.5 0.0 0.0076 15.9 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Rio2_N PF09202.11 gi|294494787|ref|YP_003541280.1| - 7.5e-05 22.9 0.3 0.21 11.8 0.1 2.5 2 0 0 2 2 2 2 Rio2, N-terminal HTH_45 PF14947.6 gi|294494787|ref|YP_003541280.1| - 0.00029 20.8 0.3 0.37 10.8 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix HTH_11 PF08279.12 gi|294494787|ref|YP_003541280.1| - 0.00047 20.1 0.9 1.1 9.3 0.1 2.6 2 0 0 2 2 2 2 HTH domain Penicillinase_R PF03965.16 gi|294494787|ref|YP_003541280.1| - 0.0007 19.9 0.6 0.19 12.1 0.1 2.5 2 0 0 2 2 2 1 Penicillinase repressor HTH_9 PF08221.11 gi|294494787|ref|YP_003541280.1| - 0.0018 18.3 2.0 0.79 9.9 0.4 3.3 2 1 1 3 3 3 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Fe_dep_repress PF01325.19 gi|294494787|ref|YP_003541280.1| - 0.002 18.3 0.2 0.049 13.8 0.1 2.6 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.6 gi|294494787|ref|YP_003541280.1| - 0.0022 17.7 0.3 1 9.2 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain DUF2582 PF10771.9 gi|294494787|ref|YP_003541280.1| - 0.008 16.3 0.0 0.02 15.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix domain (DUF2582) HTH_28 PF13518.6 gi|294494787|ref|YP_003541280.1| - 0.013 15.6 0.0 2.5 8.3 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain RuvB_C PF05491.13 gi|294494787|ref|YP_003541280.1| - 0.016 15.0 0.7 0.12 12.2 0.1 2.3 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain HTH_29 PF13551.6 gi|294494787|ref|YP_003541280.1| - 0.016 15.2 0.0 6 7.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix HTH_30 PF13556.6 gi|294494787|ref|YP_003541280.1| - 0.017 14.9 0.1 0.049 13.4 0.1 1.8 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF742 PF05331.11 gi|294494787|ref|YP_003541280.1| - 0.026 14.4 0.0 0.98 9.3 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF742) Cdc6_C PF09079.11 gi|294494787|ref|YP_003541280.1| - 0.027 14.4 0.7 6.2 6.9 0.2 3.0 3 0 0 3 3 3 0 CDC6, C terminal winged helix domain Phage_rep_O PF04492.13 gi|294494787|ref|YP_003541280.1| - 0.027 15.0 0.1 9.7 6.9 0.0 2.5 2 0 0 2 2 2 0 Bacteriophage replication protein O TFIIE_alpha PF02002.17 gi|294494787|ref|YP_003541280.1| - 0.03 14.2 0.6 2.2 8.2 0.0 2.7 3 0 0 3 3 2 0 TFIIE alpha subunit RP-C PF03428.13 gi|294494787|ref|YP_003541280.1| - 0.042 13.5 0.0 1.2 8.7 0.0 2.2 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_23 PF13384.6 gi|294494787|ref|YP_003541280.1| - 0.047 13.5 0.0 14 5.7 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain HTH_54 PF18607.1 gi|294494787|ref|YP_003541280.1| - 0.064 13.3 0.1 6.9 6.8 0.0 2.7 3 0 0 3 3 2 0 ParA helix turn helix domain HTH_Tnp_ISL3 PF13542.6 gi|294494787|ref|YP_003541280.1| - 0.12 11.8 0.2 6.4 6.3 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_17 PF12728.7 gi|294494787|ref|YP_003541280.1| - 0.15 12.2 0.5 6 7.1 0.1 2.9 3 0 0 3 3 2 0 Helix-turn-helix domain Bac_DnaA_C PF08299.11 gi|294494787|ref|YP_003541280.1| - 0.23 11.5 1.3 1.9 8.6 0.2 2.8 3 0 0 3 3 3 0 Bacterial dnaA protein helix-turn-helix NUMOD1 PF07453.13 gi|294494787|ref|YP_003541280.1| - 1.6 9.1 4.9 28 5.1 0.2 3.4 3 0 0 3 3 2 0 NUMOD1 domain DUF2204 PF09970.9 gi|294494788|ref|YP_003541281.1| - 0.0015 18.2 0.2 0.027 14.1 0.1 2.2 1 1 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) ACT_4 PF13291.6 gi|294494788|ref|YP_003541281.1| - 0.032 14.8 0.0 0.059 14.0 0.0 1.4 1 0 0 1 1 1 0 ACT domain GrpB PF04229.14 gi|294494788|ref|YP_003541281.1| - 0.12 12.6 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 GrpB protein HTH_11 PF08279.12 gi|294494789|ref|YP_003541282.1| - 0.03 14.3 1.3 1.3 9.0 0.0 3.4 4 0 0 4 4 4 0 HTH domain AbiEii PF08843.11 gi|294494790|ref|YP_003541283.1| - 3.5e-05 23.9 0.0 0.00021 21.3 0.0 1.9 1 1 0 1 1 1 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system PGF-CTERM PF18204.1 gi|294494792|ref|YP_003541285.1| - 0.011 15.6 1.3 0.02 14.9 1.3 1.4 1 0 0 1 1 1 0 PGF-CTERM motif Gram_pos_anchor PF00746.21 gi|294494792|ref|YP_003541285.1| - 0.086 12.8 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 LPXTG cell wall anchor motif Transglut_core PF01841.19 gi|294494793|ref|YP_003541286.1| - 1.9e-16 60.5 0.2 6.6e-16 58.8 0.0 2.1 2 0 0 2 2 1 1 Transglutaminase-like superfamily CARDB PF07705.11 gi|294494793|ref|YP_003541286.1| - 5e-13 49.2 64.3 0.0017 18.5 0.1 14.7 16 1 2 18 18 17 6 CARDB Y_Y_Y PF07495.13 gi|294494793|ref|YP_003541286.1| - 1.7e-07 31.1 3.6 7 6.7 0.0 7.7 7 0 0 7 7 7 1 Y_Y_Y domain Arrestin_C PF02752.22 gi|294494793|ref|YP_003541286.1| - 3.9e-06 27.4 0.7 0.29 11.6 0.0 6.0 6 0 0 6 6 6 1 Arrestin (or S-antigen), C-terminal domain DUF4625 PF15418.6 gi|294494793|ref|YP_003541286.1| - 7.1e-06 26.3 0.1 0.52 10.6 0.0 5.9 4 1 1 5 5 5 1 Domain of unknown function (DUF4625) DUF11 PF01345.18 gi|294494793|ref|YP_003541286.1| - 0.01 16.1 31.9 0.55 10.6 0.0 8.8 9 0 0 9 9 8 0 Domain of unknown function DUF11 Wzt_C PF14524.6 gi|294494793|ref|YP_003541286.1| - 0.019 15.0 12.9 15 5.6 0.0 8.2 8 2 1 9 9 9 0 Wzt C-terminal domain BsuPI PF12690.7 gi|294494793|ref|YP_003541286.1| - 0.05 13.6 6.8 53 3.9 0.0 7.9 9 0 0 9 9 9 0 Intracellular proteinase inhibitor DUF4350 PF14258.6 gi|294494793|ref|YP_003541286.1| - 0.052 14.0 0.0 0.32 11.4 0.0 2.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) CBM_2 PF00553.19 gi|294494793|ref|YP_003541286.1| - 0.061 13.6 1.0 5.4 7.4 0.0 4.6 4 0 0 4 4 3 0 Cellulose binding domain SseC PF04888.12 gi|294494793|ref|YP_003541286.1| - 0.15 11.7 17.1 0.22 11.1 17.1 1.2 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family EMC3_TMCO1 PF01956.16 gi|294494793|ref|YP_003541286.1| - 0.43 10.3 6.1 0.84 9.4 6.1 1.4 1 0 0 1 1 1 0 Integral membrane protein EMC3/TMCO1-like TcfC PF16967.5 gi|294494793|ref|YP_003541286.1| - 0.67 9.5 3.2 27 4.3 0.2 4.4 5 0 0 5 5 5 0 E-set like domain ASH PF15780.5 gi|294494793|ref|YP_003541286.1| - 2.3 8.5 9.1 5.2 7.3 0.1 5.3 6 0 0 6 6 5 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin BUD22 PF09073.10 gi|294494793|ref|YP_003541286.1| - 2.8 7.2 24.1 4.3 6.6 24.1 1.1 1 0 0 1 1 1 0 BUD22 Uteroglobin PF01099.17 gi|294494793|ref|YP_003541286.1| - 3.8 7.9 5.7 2.6 8.4 2.5 2.2 2 0 0 2 2 2 0 Uteroglobin family Spc7 PF08317.11 gi|294494793|ref|YP_003541286.1| - 4.2 6.2 23.9 9.9 4.9 23.9 1.5 1 0 0 1 1 1 0 Spc7 kinetochore protein V_ATPase_I PF01496.19 gi|294494793|ref|YP_003541286.1| - 4.2 5.2 9.4 6.5 4.5 9.4 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family OrfB_Zn_ribbon PF07282.11 gi|294494794|ref|YP_003541287.1| - 9.5e-22 76.7 1.3 2.4e-21 75.4 1.3 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|294494794|ref|YP_003541287.1| - 1.1e-10 41.7 0.1 3.2e-10 40.3 0.1 1.8 1 0 0 1 1 1 1 Probable transposase C1_2 PF03107.16 gi|294494794|ref|YP_003541287.1| - 0.076 13.3 1.5 0.19 12.1 1.5 1.7 1 0 0 1 1 1 0 C1 domain zn-ribbon_14 PF16503.5 gi|294494794|ref|YP_003541287.1| - 0.22 11.1 2.5 5 6.7 0.5 2.4 2 0 0 2 2 2 0 Zinc-ribbon Retrotran_gag_3 PF14244.6 gi|294494794|ref|YP_003541287.1| - 0.26 11.1 1.8 1.3 8.9 0.1 2.9 3 0 0 3 3 3 0 gag-polypeptide of LTR copia-type PKD PF00801.20 gi|294494795|ref|YP_003541288.1| - 3.5e-06 26.8 4.8 3.5e-06 26.8 4.8 6.1 6 0 0 6 6 6 1 PKD domain Big_7 PF17957.1 gi|294494795|ref|YP_003541288.1| - 0.0069 17.1 1.8 0.0069 17.1 1.8 11.9 12 2 0 12 12 12 5 Bacterial Ig domain DUF4175 PF13779.6 gi|294494795|ref|YP_003541288.1| - 0.094 10.6 0.0 25 2.6 0.0 3.4 3 1 0 4 4 4 0 Domain of unknown function (DUF4175) Gram_pos_anchor PF00746.21 gi|294494795|ref|YP_003541288.1| - 0.17 11.9 0.0 0.4 10.7 0.0 1.6 1 0 0 1 1 1 0 LPXTG cell wall anchor motif DUF4974 PF16344.5 gi|294494795|ref|YP_003541288.1| - 0.61 10.1 6.8 57 3.8 0.2 4.5 4 0 0 4 4 4 0 Domain of unknown function (DUF4974) NosD PF05048.13 gi|294494796|ref|YP_003541289.1| - 1.2e-79 267.0 175.9 4.6e-47 160.3 54.0 7.2 3 2 3 7 7 7 5 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|294494796|ref|YP_003541289.1| - 6.3e-37 126.9 161.1 1.4e-19 70.5 41.8 8.5 3 2 5 9 9 9 6 Right handed beta helix region FlgD_ig PF13860.6 gi|294494796|ref|YP_003541289.1| - 0.8 9.6 5.5 3.2 7.7 0.5 3.6 3 0 0 3 3 3 0 FlgD Ig-like domain Peptidase_S8 PF00082.22 gi|294494797|ref|YP_003541290.1| - 6.6e-49 166.8 4.2 6.6e-49 166.8 4.2 1.9 2 0 0 2 2 2 1 Subtilase family PKD PF00801.20 gi|294494797|ref|YP_003541290.1| - 2.6e-05 24.0 4.0 9.2e-05 22.2 4.0 2.0 1 0 0 1 1 1 1 PKD domain HATPase_c PF02518.26 gi|294494798|ref|YP_003541291.1| - 1.7e-32 112.3 0.2 5.6e-32 110.6 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|294494798|ref|YP_003541291.1| - 5.8e-25 87.4 0.8 1.5e-24 86.0 0.8 1.8 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|294494798|ref|YP_003541291.1| - 2.1e-17 62.9 0.1 4.6e-17 61.8 0.1 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|294494798|ref|YP_003541291.1| - 6.2e-08 32.8 0.1 0.0066 16.7 0.0 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c_3 PF13589.6 gi|294494798|ref|YP_003541291.1| - 4.1e-05 23.4 0.0 0.0001 22.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|294494798|ref|YP_003541291.1| - 6.1e-05 23.0 0.0 0.044 13.8 0.0 3.3 3 0 0 3 3 3 1 PAS fold HATPase_c_5 PF14501.6 gi|294494798|ref|YP_003541291.1| - 0.00021 21.2 0.0 0.00046 20.0 0.0 1.7 1 0 0 1 1 1 1 GHKL domain PAS_4 PF08448.10 gi|294494798|ref|YP_003541291.1| - 0.00027 21.2 0.1 0.88 9.8 0.0 3.5 3 1 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.6 gi|294494798|ref|YP_003541291.1| - 0.0015 18.5 0.0 0.0033 17.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|294494798|ref|YP_003541291.1| - 0.0081 16.2 0.0 3.1 7.9 0.0 2.7 2 0 0 2 2 2 1 PAS domain PAS_11 PF14598.6 gi|294494798|ref|YP_003541291.1| - 0.02 15.0 0.0 0.061 13.5 0.0 1.8 1 0 0 1 1 1 0 PAS domain D5_N PF08706.11 gi|294494798|ref|YP_003541291.1| - 0.11 12.8 1.9 0.21 11.8 0.2 2.4 2 0 0 2 2 2 0 D5 N terminal like PAS_7 PF12860.7 gi|294494798|ref|YP_003541291.1| - 0.14 12.4 0.1 1.1e+02 3.0 0.0 3.8 4 0 0 4 4 4 0 PAS fold PAS_4 PF08448.10 gi|294494799|ref|YP_003541292.1| - 3.9e-20 72.2 0.1 3.3e-14 53.1 0.0 3.0 2 1 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|294494799|ref|YP_003541292.1| - 7.9e-19 67.8 0.0 3.3e-15 56.2 0.0 2.4 2 1 0 2 2 2 2 PAS domain PAS PF00989.25 gi|294494799|ref|YP_003541292.1| - 5.1e-16 58.7 0.1 1e-14 54.5 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_3 PF08447.12 gi|294494799|ref|YP_003541292.1| - 1.5e-08 34.8 0.0 4.6e-08 33.2 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|294494799|ref|YP_003541292.1| - 0.0003 20.7 0.0 0.0011 19.0 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS_10 PF13596.6 gi|294494799|ref|YP_003541292.1| - 0.00051 20.6 0.0 0.0085 16.7 0.0 2.1 2 0 0 2 2 2 1 PAS domain Lectin_like PF18560.1 gi|294494800|ref|YP_003541293.1| - 1.9e-55 187.3 12.8 9.7e-55 185.0 5.4 2.8 2 1 0 2 2 2 2 Lectin like domain Peptidase_C1 PF00112.23 gi|294494800|ref|YP_003541293.1| - 3.7e-25 89.3 0.0 7.6e-25 88.3 0.0 1.5 1 0 0 1 1 1 1 Papain family cysteine protease DUF4082 PF13313.6 gi|294494800|ref|YP_003541293.1| - 0.00015 21.8 2.6 0.00015 21.8 2.6 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4082) fn3 PF00041.21 gi|294494800|ref|YP_003541293.1| - 0.0003 21.1 7.5 0.001 19.3 0.4 3.6 2 2 0 2 2 2 1 Fibronectin type III domain DUF2846 PF11008.8 gi|294494800|ref|YP_003541293.1| - 0.046 13.7 2.2 6 7.0 0.1 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF2846) Epimerase PF01370.21 gi|294494801|ref|YP_003541294.1| - 2e-56 191.2 0.0 2.3e-56 190.9 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|294494801|ref|YP_003541294.1| - 4.4e-56 190.7 0.0 1.9e-55 188.6 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|294494801|ref|YP_003541294.1| - 2.1e-18 66.3 0.0 2.9e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|294494801|ref|YP_003541294.1| - 6.3e-17 61.6 0.0 9e-17 61.1 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|294494801|ref|YP_003541294.1| - 1.8e-16 60.2 0.0 4.5e-15 55.6 0.0 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|294494801|ref|YP_003541294.1| - 1.5e-15 57.1 0.0 1e-14 54.3 0.0 2.1 1 1 1 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|294494801|ref|YP_003541294.1| - 1.3e-08 34.9 0.0 2.5e-08 34.0 0.0 1.4 1 1 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|294494801|ref|YP_003541294.1| - 0.00052 20.0 1.1 0.049 13.5 0.2 2.5 2 1 0 2 2 2 1 KR domain NmrA PF05368.13 gi|294494801|ref|YP_003541294.1| - 0.00073 19.2 0.0 0.026 14.1 0.0 2.2 2 0 0 2 2 2 1 NmrA-like family TrkA_N PF02254.18 gi|294494801|ref|YP_003541294.1| - 0.0011 19.2 0.0 0.0019 18.5 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain DUF1616 PF07760.11 gi|294494802|ref|YP_003541295.1| - 4.4e-113 377.5 0.6 5.1e-113 377.3 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4064 PF13273.6 gi|294494802|ref|YP_003541295.1| - 0.0047 17.2 0.4 0.0047 17.2 0.4 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF4064) MFS_1 PF07690.16 gi|294494802|ref|YP_003541295.1| - 0.0084 15.1 9.5 0.018 14.0 9.5 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily DUF2142 PF09913.9 gi|294494802|ref|YP_003541295.1| - 0.041 12.8 3.0 0.56 9.0 0.1 2.3 2 0 0 2 2 2 0 Predicted membrane protein (DUF2142) DUF872 PF05915.12 gi|294494802|ref|YP_003541295.1| - 1 9.5 7.1 11 6.2 1.6 2.6 3 0 0 3 3 3 0 Eukaryotic protein of unknown function (DUF872) Sigma_reg_N PF13800.6 gi|294494802|ref|YP_003541295.1| - 1.7 9.0 5.2 3.2 8.1 0.6 2.9 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF4870 PF09685.10 gi|294494802|ref|YP_003541295.1| - 3.2 7.9 12.5 3.4 7.8 7.6 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4870) CPBP PF02517.16 gi|294494803|ref|YP_003541296.1| - 7.5e-14 51.9 24.6 2.2e-12 47.2 24.6 2.8 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease DUF2892 PF11127.8 gi|294494804|ref|YP_003541297.1| - 0.67 10.0 5.1 1.9 8.6 1.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) DUF2892 PF11127.8 gi|294494805|ref|YP_003541298.1| - 0.68 10.0 5.2 1.9 8.6 1.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) PKD PF00801.20 gi|294494806|ref|YP_003541299.1| - 5.1e-12 45.5 1.9 1.8e-11 43.7 1.9 1.9 1 0 0 1 1 1 1 PKD domain PGF-CTERM PF18204.1 gi|294494806|ref|YP_003541299.1| - 3.6e-09 36.3 5.0 3.6e-09 36.3 5.0 1.8 2 0 0 2 2 2 1 PGF-CTERM motif DUF3244 PF11589.8 gi|294494806|ref|YP_003541299.1| - 0.027 14.6 4.5 3.1 7.9 0.0 3.9 4 0 0 4 4 4 0 Domain of unknown function (DUF3244) PKD_3 PF16820.5 gi|294494806|ref|YP_003541299.1| - 0.027 14.2 0.3 0.062 13.1 0.3 1.6 1 0 0 1 1 1 0 PKD-like domain YDG PF18657.1 gi|294494806|ref|YP_003541299.1| - 0.22 11.7 8.0 0.26 11.5 0.5 3.8 3 0 0 3 3 3 0 YDG domain Y_Y_Y PF07495.13 gi|294494807|ref|YP_003541300.1| - 0.00079 19.3 0.2 0.095 12.7 0.0 3.6 2 1 1 3 3 3 1 Y_Y_Y domain CarboxypepD_reg PF13620.6 gi|294494807|ref|YP_003541300.1| - 0.0015 18.8 2.4 4.3 7.7 0.0 4.1 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain FlgD_ig PF13860.6 gi|294494807|ref|YP_003541300.1| - 0.022 14.6 4.1 0.14 12.0 0.2 3.6 3 1 0 3 3 3 0 FlgD Ig-like domain NTP_transferase PF00483.23 gi|294494808|ref|YP_003541301.1| - 1.2e-29 103.7 0.0 1.6e-29 103.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|294494808|ref|YP_003541301.1| - 1.7e-07 31.8 0.0 2.6e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.26 gi|294494808|ref|YP_003541301.1| - 1.4e-05 25.0 0.0 2.3e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 CTP_transf_3 PF02348.19 gi|294494808|ref|YP_003541301.1| - 0.083 12.8 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Cytidylyltransferase IspD PF01128.19 gi|294494808|ref|YP_003541301.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF2897 PF11446.8 gi|294494809|ref|YP_003541302.1| - 0.0059 16.5 2.4 0.0059 16.5 2.4 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2897) Glycos_transf_2 PF00535.26 gi|294494810|ref|YP_003541303.1| - 2e-25 89.6 0.1 2.7e-25 89.1 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|294494810|ref|YP_003541303.1| - 7.2e-18 65.3 0.0 9.7e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|294494810|ref|YP_003541303.1| - 1.1e-12 48.3 2.1 1.5e-12 47.9 0.0 2.0 1 1 1 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|294494810|ref|YP_003541303.1| - 7.2e-08 32.2 0.1 1.1e-07 31.7 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|294494810|ref|YP_003541303.1| - 6.6e-06 25.7 0.0 1.2e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.15 gi|294494810|ref|YP_003541303.1| - 2.8e-05 22.9 5.5 6.4e-05 21.8 0.0 2.7 3 0 0 3 3 3 1 Chitin synthase DUF2606 PF10794.9 gi|294494810|ref|YP_003541303.1| - 0.0059 16.4 0.4 0.01 15.6 0.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2606) Anp1 PF03452.14 gi|294494810|ref|YP_003541303.1| - 0.0088 15.5 0.1 0.035 13.5 0.0 1.8 1 1 0 2 2 2 1 Anp1 Glyco_tranf_2_4 PF13704.6 gi|294494810|ref|YP_003541303.1| - 0.066 13.7 0.5 0.12 12.9 0.0 1.6 2 0 0 2 2 2 0 Glycosyl transferase family 2 AglB_L1 PF18079.1 gi|294494811|ref|YP_003541304.1| - 4e-26 91.1 6.0 4e-26 91.1 6.0 1.8 2 0 0 2 2 2 1 Archaeal glycosylation protein B long peripheral domain STT3 PF02516.14 gi|294494811|ref|YP_003541304.1| - 4.8e-26 91.7 33.7 2.8e-25 89.2 33.7 2.1 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Big_6 PF17936.1 gi|294494811|ref|YP_003541304.1| - 0.14 12.4 1.1 0.3 11.4 1.1 1.5 1 0 0 1 1 1 0 Bacterial Ig domain NTP_transf_2 PF01909.23 gi|294494812|ref|YP_003541305.1| - 3.2e-15 56.2 0.0 4e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|294494812|ref|YP_003541305.1| - 3.9e-13 49.3 0.0 4.9e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|294494812|ref|YP_003541305.1| - 0.012 15.8 0.0 0.014 15.6 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase beta palm DUF294 PF03445.13 gi|294494812|ref|YP_003541305.1| - 0.024 14.5 0.0 0.027 14.3 0.0 1.1 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 DUF2196 PF09962.9 gi|294494813|ref|YP_003541306.1| - 1.4e-29 101.8 5.0 1.6e-29 101.7 5.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) Mis14 PF08641.12 gi|294494814|ref|YP_003541307.1| - 3.9e-05 24.0 0.0 4.3e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Kinetochore protein Mis14 like TBPIP PF07106.13 gi|294494814|ref|YP_003541307.1| - 0.011 15.7 0.1 0.015 15.2 0.1 1.3 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain dsDNA_bind PF01984.20 gi|294494814|ref|YP_003541307.1| - 0.082 13.2 0.4 0.1 12.9 0.4 1.1 1 0 0 1 1 1 0 Double-stranded DNA-binding domain Aconitase_C PF00694.19 gi|294494815|ref|YP_003541308.1| - 7.6e-19 68.3 0.0 1.3e-18 67.6 0.0 1.3 1 1 0 1 1 1 1 Aconitase C-terminal domain Iso_dh PF00180.20 gi|294494817|ref|YP_003541310.1| - 1.5e-93 313.7 0.0 1.9e-93 313.4 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase AA_kinase PF00696.28 gi|294494818|ref|YP_003541311.1| - 2e-29 102.9 1.3 5e-29 101.6 1.3 1.6 1 1 0 1 1 1 1 Amino acid kinase family SKI PF01202.22 gi|294494818|ref|YP_003541311.1| - 0.0081 16.3 0.9 0.021 14.9 0.1 2.2 2 1 1 3 3 3 1 Shikimate kinase AlaDh_PNT_C PF01262.21 gi|294494818|ref|YP_003541311.1| - 0.065 12.5 0.1 0.065 12.5 0.1 2.1 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Fer4 PF00037.27 gi|294494819|ref|YP_003541312.1| - 1.7e-18 65.6 21.7 3.3e-09 36.2 7.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|294494819|ref|YP_003541312.1| - 1.2e-12 47.8 24.7 1.2e-09 38.1 13.6 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|294494819|ref|YP_003541312.1| - 1.3e-12 47.6 15.6 1.5e-12 47.5 15.6 1.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|294494819|ref|YP_003541312.1| - 5.9e-12 46.0 14.2 8.9e-12 45.4 14.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294494819|ref|YP_003541312.1| - 1.3e-11 44.0 21.7 6.2e-06 26.1 7.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|294494819|ref|YP_003541312.1| - 3.2e-11 44.0 11.1 1e-05 26.4 2.7 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|294494819|ref|YP_003541312.1| - 3.7e-11 42.4 16.7 1.9e-05 24.4 5.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|294494819|ref|YP_003541312.1| - 4.2e-11 42.8 11.9 6.2e-11 42.3 11.9 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294494819|ref|YP_003541312.1| - 3.8e-10 39.5 14.7 6.2e-05 23.2 4.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294494819|ref|YP_003541312.1| - 3.4e-07 30.7 22.5 0.004 17.7 1.6 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|294494819|ref|YP_003541312.1| - 2.8e-06 27.7 13.1 0.0024 18.3 13.2 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|294494819|ref|YP_003541312.1| - 1.8e-05 25.2 18.1 0.012 16.1 2.9 2.4 2 1 1 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|294494819|ref|YP_003541312.1| - 8e-05 23.3 19.9 0.015 16.2 5.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|294494819|ref|YP_003541312.1| - 0.00015 21.9 16.5 0.00063 19.9 4.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|294494819|ref|YP_003541312.1| - 0.00024 21.9 13.1 0.028 15.3 3.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|294494819|ref|YP_003541312.1| - 0.0011 19.7 18.3 0.0015 19.2 4.0 2.7 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.6 gi|294494819|ref|YP_003541312.1| - 0.045 13.9 6.6 0.052 13.7 6.6 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|294494819|ref|YP_003541312.1| - 0.92 9.7 7.0 5 7.3 1.8 2.0 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S zf-C2H2_11 PF16622.5 gi|294494819|ref|YP_003541312.1| - 6.8 6.5 7.8 3.8 7.4 0.5 2.2 2 0 0 2 2 2 0 zinc-finger C2H2-type Pilin_N PF07790.11 gi|294494820|ref|YP_003541313.1| - 9.3e-14 52.1 0.3 1.9e-13 51.1 0.3 1.5 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Helicase_C_2 PF13307.6 gi|294494821|ref|YP_003541314.1| - 5.3e-26 91.8 0.0 1.5e-25 90.3 0.0 1.8 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|294494821|ref|YP_003541314.1| - 6.9e-19 68.1 2.8 3.5e-18 65.9 2.8 1.9 1 1 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|294494821|ref|YP_003541314.1| - 8.8e-05 22.6 3.1 0.009 16.0 3.1 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|294494821|ref|YP_003541314.1| - 0.00021 21.1 0.1 0.0071 16.1 0.0 2.8 3 0 0 3 3 3 1 DEAD/DEAH box helicase ATPase PF06745.13 gi|294494821|ref|YP_003541314.1| - 0.0023 17.3 0.2 0.005 16.2 0.2 1.5 1 0 0 1 1 1 1 KaiC HBB PF06777.11 gi|294494821|ref|YP_003541314.1| - 0.0045 16.7 0.0 0.017 14.9 0.0 1.9 2 0 0 2 2 2 1 Helical and beta-bridge domain DUF1115 PF06544.12 gi|294494821|ref|YP_003541314.1| - 0.019 15.1 0.6 0.037 14.1 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1115) PhoH PF02562.16 gi|294494821|ref|YP_003541314.1| - 0.023 14.1 0.2 0.067 12.6 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein MgtE_N PF03448.17 gi|294494821|ref|YP_003541314.1| - 0.027 15.1 0.4 0.093 13.3 0.2 2.0 2 0 0 2 2 1 0 MgtE intracellular N domain AAA_25 PF13481.6 gi|294494821|ref|YP_003541314.1| - 0.039 13.5 0.4 3.2 7.3 0.1 2.8 2 1 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|294494821|ref|YP_003541314.1| - 0.056 12.7 0.1 8.6 5.5 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_34 PF13872.6 gi|294494821|ref|YP_003541314.1| - 0.074 11.9 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 AAA_30 PF13604.6 gi|294494821|ref|YP_003541314.1| - 0.075 12.7 0.0 0.43 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain Zot PF05707.12 gi|294494821|ref|YP_003541314.1| - 0.12 12.0 0.1 3.1 7.4 0.0 2.4 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) GHMP_kinases_N PF00288.26 gi|294494822|ref|YP_003541315.1| - 2.1e-09 37.5 0.3 5e-09 36.3 0.3 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|294494822|ref|YP_003541315.1| - 1.5e-08 34.8 0.0 3e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal Nop PF01798.18 gi|294494823|ref|YP_003541316.1| - 2.5e-51 174.4 0.0 4.5e-51 173.5 0.0 1.4 1 1 0 1 1 1 1 snoRNA binding domain, fibrillarin TetR_C_34 PF17929.1 gi|294494823|ref|YP_003541316.1| - 0.044 13.9 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Fibrillarin PF01269.17 gi|294494824|ref|YP_003541317.1| - 1.8e-87 292.2 0.0 2e-87 292.1 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Methyltransf_25 PF13649.6 gi|294494824|ref|YP_003541317.1| - 0.004 17.8 0.0 0.0067 17.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|294494824|ref|YP_003541317.1| - 0.0055 16.5 0.0 0.01 15.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|294494824|ref|YP_003541317.1| - 0.075 12.1 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_24 PF13578.6 gi|294494824|ref|YP_003541317.1| - 0.11 13.6 0.0 0.24 12.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|294494824|ref|YP_003541317.1| - 0.17 12.6 0.0 0.43 11.2 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain DUF2769 PF10967.8 gi|294494825|ref|YP_003541318.1| - 1.6e-12 47.9 13.9 2.2e-12 47.4 10.7 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2769) Rhodanese PF00581.20 gi|294494826|ref|YP_003541319.1| - 2.5e-15 56.9 0.0 3.9e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 Rhodanese-like domain NosD PF05048.13 gi|294494827|ref|YP_003541320.1| - 4.2e-67 225.9 119.4 4.4e-39 134.2 45.9 3.7 2 1 2 4 4 4 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|294494827|ref|YP_003541320.1| - 3.3e-25 88.8 88.7 2.2e-16 60.1 39.4 2.8 2 1 1 3 3 3 2 Right handed beta helix region DUF1565 PF07602.11 gi|294494827|ref|YP_003541320.1| - 1.6e-05 24.3 63.5 0.18 11.1 18.3 5.1 2 1 2 4 4 4 3 Protein of unknown function (DUF1565) Pectinesterase PF01095.19 gi|294494827|ref|YP_003541320.1| - 0.00011 21.0 1.1 0.00027 19.8 1.1 1.6 1 0 0 1 1 1 1 Pectinesterase Big_7 PF17957.1 gi|294494827|ref|YP_003541320.1| - 0.025 15.3 3.3 0.025 15.3 3.3 4.0 4 1 0 4 4 4 0 Bacterial Ig domain Pectate_lyase_3 PF12708.7 gi|294494827|ref|YP_003541320.1| - 3.8 7.3 57.3 0.062 13.1 11.2 4.8 2 1 3 5 5 5 0 Pectate lyase superfamily protein Methyltransf_25 PF13649.6 gi|294494828|ref|YP_003541321.1| - 1.7e-14 54.2 0.0 3.5e-14 53.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|294494828|ref|YP_003541321.1| - 8.4e-11 42.5 0.0 1.5e-10 41.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|294494828|ref|YP_003541321.1| - 2.3e-10 41.0 0.0 4e-10 40.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|294494828|ref|YP_003541321.1| - 2.9e-10 40.2 0.0 5.2e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|294494828|ref|YP_003541321.1| - 3.7e-09 36.6 0.0 6.5e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|294494828|ref|YP_003541321.1| - 7.9e-07 28.6 0.0 1.5e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G RrnaAD PF00398.20 gi|294494828|ref|YP_003541321.1| - 1.3e-06 27.7 0.0 1.9e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|294494828|ref|YP_003541321.1| - 1.8e-06 27.6 0.0 2.9e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_16 PF10294.9 gi|294494828|ref|YP_003541321.1| - 7.4e-06 25.8 0.0 1.2e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase tRNA_U5-meth_tr PF05958.11 gi|294494828|ref|YP_003541321.1| - 2.6e-05 23.4 0.1 7.4e-05 21.9 0.0 1.7 2 0 0 2 2 2 1 tRNA (Uracil-5-)-methyltransferase Ubie_methyltran PF01209.18 gi|294494828|ref|YP_003541321.1| - 3.1e-05 23.4 0.0 6e-05 22.5 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.7 gi|294494828|ref|YP_003541321.1| - 0.00031 20.7 0.1 0.00057 19.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|294494828|ref|YP_003541321.1| - 0.00042 19.5 0.0 0.0006 19.0 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase DUF938 PF06080.12 gi|294494828|ref|YP_003541321.1| - 0.00078 19.3 0.0 0.0012 18.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF938) Cons_hypoth95 PF03602.15 gi|294494828|ref|YP_003541321.1| - 0.0019 17.8 0.0 0.0032 17.1 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 TehB PF03848.14 gi|294494828|ref|YP_003541321.1| - 0.0023 17.4 0.0 0.0037 16.7 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.19 gi|294494828|ref|YP_003541321.1| - 0.0036 17.1 0.0 0.0059 16.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltr_RsmB-F PF01189.17 gi|294494828|ref|YP_003541321.1| - 0.0045 16.6 0.3 0.0092 15.6 0.0 1.6 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F Met_10 PF02475.16 gi|294494828|ref|YP_003541321.1| - 0.0054 16.5 0.0 0.0081 15.9 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_4 PF02390.17 gi|294494828|ref|YP_003541321.1| - 0.012 15.1 0.1 0.029 13.8 0.0 1.7 2 0 0 2 2 2 0 Putative methyltransferase CMAS PF02353.20 gi|294494828|ref|YP_003541321.1| - 0.015 14.6 0.1 0.063 12.6 0.0 1.9 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.10 gi|294494828|ref|YP_003541321.1| - 0.027 14.0 0.0 0.045 13.3 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase FtsJ PF01728.19 gi|294494828|ref|YP_003541321.1| - 0.032 14.4 0.0 0.048 13.8 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase AICARFT_IMPCHas PF01808.18 gi|294494829|ref|YP_003541322.1| - 7.7e-97 324.3 0.0 9.7e-97 324.0 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.22 gi|294494829|ref|YP_003541322.1| - 2e-27 95.2 0.0 3.9e-27 94.3 0.0 1.5 1 0 0 1 1 1 1 MGS-like domain Methyltransf_31 PF13847.6 gi|294494830|ref|YP_003541323.1| - 7.6e-18 64.8 0.0 8.8e-18 64.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|294494830|ref|YP_003541323.1| - 1.4e-16 61.0 0.0 1.8e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|294494830|ref|YP_003541323.1| - 6.9e-16 58.7 0.0 9.2e-16 58.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|294494830|ref|YP_003541323.1| - 2.2e-13 50.8 0.0 2.9e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|294494830|ref|YP_003541323.1| - 3e-09 36.7 0.1 3.8e-09 36.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.18 gi|294494830|ref|YP_003541323.1| - 3.8e-09 36.2 0.0 4.8e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|294494830|ref|YP_003541323.1| - 7.4e-09 35.4 0.0 1e-08 35.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|294494830|ref|YP_003541323.1| - 1.6e-08 34.6 0.0 2.1e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|294494830|ref|YP_003541323.1| - 0.0003 20.7 0.0 0.0089 15.9 0.0 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_18 PF12847.7 gi|294494830|ref|YP_003541323.1| - 0.0004 20.4 0.1 0.00053 19.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|294494830|ref|YP_003541323.1| - 0.00049 19.5 0.0 0.00064 19.1 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain CMAS PF02353.20 gi|294494830|ref|YP_003541323.1| - 0.0018 17.6 0.0 0.0023 17.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FmrO PF07091.11 gi|294494830|ref|YP_003541323.1| - 0.0019 17.8 0.0 0.0025 17.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_4 PF02390.17 gi|294494830|ref|YP_003541323.1| - 0.0021 17.5 0.1 0.0044 16.5 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase Met_10 PF02475.16 gi|294494830|ref|YP_003541323.1| - 0.0033 17.2 0.0 0.004 16.9 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_32 PF13679.6 gi|294494830|ref|YP_003541323.1| - 0.0044 17.0 0.0 0.0063 16.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|294494830|ref|YP_003541323.1| - 0.017 14.1 0.0 0.025 13.6 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase TPMT PF05724.11 gi|294494830|ref|YP_003541323.1| - 0.026 14.2 0.0 0.035 13.8 0.0 1.3 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) ADH_zinc_N PF00107.26 gi|294494830|ref|YP_003541323.1| - 0.033 14.2 0.0 0.083 12.9 0.0 1.7 1 1 0 1 1 1 0 Zinc-binding dehydrogenase MetW PF07021.12 gi|294494830|ref|YP_003541323.1| - 0.036 13.7 0.0 0.05 13.2 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW FtsJ PF01728.19 gi|294494830|ref|YP_003541323.1| - 0.072 13.2 0.0 0.084 13.0 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase PCMT PF01135.19 gi|294494830|ref|YP_003541323.1| - 0.14 11.9 0.1 0.28 10.9 0.0 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA-Thr_ED PF08915.11 gi|294494831|ref|YP_003541324.1| - 1.7e-47 160.9 3.9 1.9e-47 160.8 3.9 1.0 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase TPP_enzyme_N PF02776.18 gi|294494832|ref|YP_003541325.1| - 5.1e-48 162.9 0.0 1e-47 161.9 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|294494832|ref|YP_003541325.1| - 4e-39 133.9 0.0 1.2e-37 129.1 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|294494832|ref|YP_003541325.1| - 5.1e-27 94.3 0.0 1.5e-26 92.7 0.0 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CCG PF02754.16 gi|294494833|ref|YP_003541326.1| - 3.8e-23 81.5 1.5 7.4e-14 51.7 0.1 2.7 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_16 PF13484.6 gi|294494833|ref|YP_003541326.1| - 4.8e-09 37.0 4.0 2.2e-08 34.9 4.0 2.2 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|294494833|ref|YP_003541326.1| - 5.8e-07 29.9 3.9 5.8e-07 29.9 3.9 2.9 3 2 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294494833|ref|YP_003541326.1| - 1.2e-05 25.4 14.0 5.7e-05 23.1 8.6 4.0 3 2 1 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|294494833|ref|YP_003541326.1| - 2.3e-05 24.9 16.0 5.2e-05 23.7 5.5 2.8 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|294494833|ref|YP_003541326.1| - 3.4e-05 24.0 3.2 0.074 13.2 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|294494833|ref|YP_003541326.1| - 7e-05 23.3 7.1 7e-05 23.3 7.1 2.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|294494833|ref|YP_003541326.1| - 0.0005 19.8 12.9 0.00077 19.2 3.0 3.9 6 0 0 6 6 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|294494833|ref|YP_003541326.1| - 0.002 18.2 9.7 0.043 13.9 1.4 3.5 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294494833|ref|YP_003541326.1| - 0.003 17.7 14.4 0.0054 16.9 9.6 3.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294494833|ref|YP_003541326.1| - 0.0093 16.0 3.1 0.0093 16.0 3.1 3.6 4 0 0 4 4 3 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|294494833|ref|YP_003541326.1| - 0.022 15.3 1.9 0.022 15.3 1.9 3.5 4 0 0 4 4 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_2 PF12797.7 gi|294494833|ref|YP_003541326.1| - 0.7 10.1 20.1 0.09 12.9 1.1 3.8 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|294494833|ref|YP_003541326.1| - 1.5 9.6 21.7 0.11 13.0 2.1 4.5 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|294494833|ref|YP_003541326.1| - 5.1 8.0 9.0 22 6.0 2.0 3.0 2 1 2 4 4 4 0 4Fe-4S dicluster domain CGGC PF08821.11 gi|294494834|ref|YP_003541327.1| - 1.1e-30 105.9 1.6 1.2e-30 105.8 1.6 1.0 1 0 0 1 1 1 1 CGGC domain DUF2284 PF10050.9 gi|294494836|ref|YP_003541329.1| - 1.2e-47 161.7 0.1 1.6e-47 161.3 0.1 1.2 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) T4_deiodinase PF00837.17 gi|294494836|ref|YP_003541329.1| - 0.051 12.9 0.0 0.077 12.3 0.0 1.2 1 0 0 1 1 1 0 Iodothyronine deiodinase MMPL PF03176.15 gi|294494838|ref|YP_003541331.1| - 2.5e-48 164.7 7.0 3.3e-25 88.7 2.6 2.1 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|294494838|ref|YP_003541331.1| - 4.1e-12 46.2 10.9 3.7e-07 30.1 1.4 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.19 gi|294494838|ref|YP_003541331.1| - 1e-08 33.4 23.5 3.3e-05 21.8 6.2 2.8 2 2 0 2 2 2 2 AcrB/AcrD/AcrF family SecD_SecF PF02355.16 gi|294494838|ref|YP_003541331.1| - 2.6e-06 26.9 6.0 2.6e-06 26.9 6.0 2.6 3 0 0 3 3 3 1 Protein export membrane protein Patched PF02460.18 gi|294494838|ref|YP_003541331.1| - 7e-06 24.4 23.9 0.00054 18.2 13.0 2.1 2 0 0 2 2 2 2 Patched family NPCBM_assoc PF10633.9 gi|294494839|ref|YP_003541332.1| - 0.00063 19.9 0.0 1.8 8.9 0.0 3.4 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|294494839|ref|YP_003541332.1| - 0.023 14.9 2.5 0.15 12.3 0.1 2.9 3 0 0 3 3 3 0 CARDB PHTB1_C PF14728.6 gi|294494839|ref|YP_003541332.1| - 0.07 12.2 0.1 0.14 11.3 0.1 1.4 1 0 0 1 1 1 0 PTHB1 C-terminus DUF4232 PF14016.6 gi|294494840|ref|YP_003541333.1| - 0.14 12.3 0.1 0.41 10.8 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4232) DUF11 PF01345.18 gi|294494840|ref|YP_003541333.1| - 1.7 9.0 5.7 0.42 10.9 0.7 2.5 3 1 0 3 3 3 0 Domain of unknown function DUF11 ArsP_1 PF03773.13 gi|294494841|ref|YP_003541334.1| - 8.1e-06 25.2 16.9 8.1e-06 25.2 16.9 1.8 1 1 1 2 2 2 1 Predicted permease ArsP_1 PF03773.13 gi|294494842|ref|YP_003541335.1| - 2e-11 43.6 5.6 2e-11 43.6 5.6 1.3 2 0 0 2 2 2 1 Predicted permease Pox_A14 PF05767.12 gi|294494842|ref|YP_003541335.1| - 0.0051 16.9 0.6 0.011 15.8 0.6 1.6 1 0 0 1 1 1 1 Poxvirus virion envelope protein A14 TadE PF07811.12 gi|294494842|ref|YP_003541335.1| - 0.015 15.6 0.6 0.015 15.6 0.6 2.6 3 0 0 3 3 3 0 TadE-like protein Torsin PF06309.11 gi|294494842|ref|YP_003541335.1| - 0.074 13.2 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Torsin Peripla_BP_2 PF01497.18 gi|294494843|ref|YP_003541336.1| - 1.4e-22 80.4 0.0 1.7e-22 80.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Methyltransf_11 PF08241.12 gi|294494844|ref|YP_003541337.1| - 3.8e-19 69.1 0.0 6.8e-19 68.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|294494844|ref|YP_003541337.1| - 1.5e-17 64.1 0.0 2.7e-17 63.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|294494844|ref|YP_003541337.1| - 2.8e-12 46.5 0.0 3.3e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|294494844|ref|YP_003541337.1| - 1.7e-11 44.1 0.0 2.3e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|294494844|ref|YP_003541337.1| - 3.1e-08 34.2 0.0 5.8e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|294494844|ref|YP_003541337.1| - 1.5e-07 31.5 0.0 2e-06 27.9 0.0 2.0 1 1 1 2 2 2 1 Hypothetical methyltransferase Methyltransf_23 PF13489.6 gi|294494844|ref|YP_003541337.1| - 1.1e-06 28.5 0.0 1.5e-06 28.1 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|294494844|ref|YP_003541337.1| - 8.6e-05 22.5 0.0 0.00013 21.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|294494844|ref|YP_003541337.1| - 0.00014 21.4 0.0 0.00025 20.5 0.0 1.6 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|294494844|ref|YP_003541337.1| - 0.0035 16.9 0.0 0.0047 16.5 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.19 gi|294494844|ref|YP_003541337.1| - 0.016 15.0 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|294494844|ref|YP_003541337.1| - 0.016 14.5 0.0 0.022 14.1 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Met_10 PF02475.16 gi|294494844|ref|YP_003541337.1| - 0.075 12.8 0.1 0.15 11.8 0.0 1.5 1 1 0 2 2 2 0 Met-10+ like-protein MTS PF05175.14 gi|294494844|ref|YP_003541337.1| - 0.078 12.5 0.0 0.12 11.9 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain Fibrillarin PF01269.17 gi|294494844|ref|YP_003541337.1| - 0.086 11.9 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 Fibrillarin GCD14 PF08704.10 gi|294494844|ref|YP_003541337.1| - 0.14 11.8 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit DOT1 PF08123.13 gi|294494844|ref|YP_003541337.1| - 0.16 11.5 0.0 0.76 9.3 0.0 1.9 2 0 0 2 2 2 0 Histone methylation protein DOT1 Radical_SAM PF04055.21 gi|294494845|ref|YP_003541338.1| - 1.9e-06 28.4 0.5 6.7e-06 26.6 0.3 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|294494845|ref|YP_003541338.1| - 0.0015 18.8 1.7 0.0036 17.6 1.7 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|294494845|ref|YP_003541338.1| - 0.01 16.0 1.3 0.03 14.4 1.3 1.8 1 0 0 1 1 1 0 4Fe-4S single cluster domain Peripla_BP_2 PF01497.18 gi|294494845|ref|YP_003541338.1| - 0.15 11.6 0.0 0.32 10.5 0.0 1.4 1 1 0 1 1 1 0 Periplasmic binding protein FecCD PF01032.18 gi|294494846|ref|YP_003541339.1| - 1.4e-89 300.2 34.2 1.7e-89 299.9 34.2 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|294494846|ref|YP_003541339.1| - 0.00019 21.0 18.8 0.00019 21.0 18.8 1.6 2 0 0 2 2 2 1 ABC 3 transport family ABC_tran PF00005.27 gi|294494847|ref|YP_003541340.1| - 5.3e-32 111.2 0.0 7.6e-32 110.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|294494847|ref|YP_003541340.1| - 4.8e-17 62.7 3.7 3.5e-12 46.8 0.4 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|294494847|ref|YP_003541340.1| - 1.2e-07 31.4 0.0 1.6e-05 24.4 0.0 2.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|294494847|ref|YP_003541340.1| - 5e-05 23.2 1.6 0.0077 16.0 0.3 2.1 1 1 1 2 2 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 gi|294494847|ref|YP_003541340.1| - 0.00032 20.7 0.0 0.00057 19.8 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|294494847|ref|YP_003541340.1| - 0.00049 20.6 0.1 0.00074 20.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|294494847|ref|YP_003541340.1| - 0.0025 17.6 0.0 0.019 14.7 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|294494847|ref|YP_003541340.1| - 0.0027 18.1 0.0 0.0047 17.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|294494847|ref|YP_003541340.1| - 0.003 18.0 0.0 0.03 14.7 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|294494847|ref|YP_003541340.1| - 0.0046 16.7 0.1 0.0083 15.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|294494847|ref|YP_003541340.1| - 0.0079 15.9 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain EcoRI PF02963.16 gi|294494847|ref|YP_003541340.1| - 0.021 13.9 0.0 0.046 12.7 0.0 1.7 1 1 0 1 1 1 0 Restriction endonuclease EcoRI NACHT PF05729.12 gi|294494847|ref|YP_003541340.1| - 0.046 13.6 0.4 0.085 12.8 0.1 1.6 2 0 0 2 2 2 0 NACHT domain AAA_22 PF13401.6 gi|294494847|ref|YP_003541340.1| - 0.054 13.8 0.3 0.26 11.6 0.1 1.9 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|294494847|ref|YP_003541340.1| - 0.082 12.3 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.9 gi|294494847|ref|YP_003541340.1| - 0.1 11.3 0.1 9.9 4.8 0.1 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class SbcCD_C PF13558.6 gi|294494847|ref|YP_003541340.1| - 0.11 12.7 0.0 1.1 9.6 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 gi|294494847|ref|YP_003541340.1| - 0.15 12.1 0.0 0.88 9.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_13 PF13166.6 gi|294494847|ref|YP_003541340.1| - 0.19 10.4 0.0 3.2 6.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain PAPS_reduct PF01507.19 gi|294494848|ref|YP_003541341.1| - 2.4e-41 141.6 0.0 4e-41 141.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.20 gi|294494848|ref|YP_003541341.1| - 7.8e-19 67.4 0.9 2e-17 62.9 0.1 2.5 2 0 0 2 2 2 1 PUA domain Fer4 PF00037.27 gi|294494848|ref|YP_003541341.1| - 2.7e-09 36.4 19.2 0.00012 21.7 4.9 3.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|294494848|ref|YP_003541341.1| - 3.9e-07 30.1 9.0 3.9e-07 30.1 9.0 3.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|294494848|ref|YP_003541341.1| - 8.7e-07 29.4 11.9 8.7e-07 29.4 11.9 2.5 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|294494848|ref|YP_003541341.1| - 1.3e-06 28.4 11.0 1.3e-06 28.4 11.0 2.5 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294494848|ref|YP_003541341.1| - 2.1e-06 27.7 10.4 2.1e-06 27.7 10.4 2.5 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294494848|ref|YP_003541341.1| - 3.8e-06 27.7 12.0 0.0057 17.6 1.7 3.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|294494848|ref|YP_003541341.1| - 0.00031 20.7 2.2 0.00031 20.7 2.2 3.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|294494848|ref|YP_003541341.1| - 0.00059 19.8 3.5 0.00059 19.8 3.5 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|294494848|ref|YP_003541341.1| - 0.0049 17.7 6.9 0.48 11.3 0.4 3.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|294494848|ref|YP_003541341.1| - 0.0062 16.9 4.4 0.019 15.4 0.8 3.5 4 0 0 4 4 2 2 4Fe-4S dicluster domain zf-RING_12 PF17976.1 gi|294494848|ref|YP_003541341.1| - 0.015 15.6 1.2 0.28 11.5 0.1 3.1 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain Fer4_4 PF12800.7 gi|294494848|ref|YP_003541341.1| - 0.024 15.1 4.0 0.024 15.1 4.0 3.6 3 1 0 3 3 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|294494848|ref|YP_003541341.1| - 0.034 15.1 5.9 0.034 15.1 5.9 3.8 3 1 0 3 3 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294494848|ref|YP_003541341.1| - 0.057 14.0 0.5 0.057 14.0 0.5 3.3 2 1 0 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|294494848|ref|YP_003541341.1| - 1.3 9.6 10.9 1.4 9.5 2.2 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|294494848|ref|YP_003541341.1| - 6.8 6.9 14.9 1.2 9.4 9.4 2.5 2 1 0 2 2 1 0 4Fe-4S dicluster domain Cas_Cas4 PF01930.17 gi|294494849|ref|YP_003541342.1| - 6.4e-13 49.1 1.6 7.2e-11 42.5 0.1 2.4 2 1 0 2 2 2 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|294494849|ref|YP_003541342.1| - 5.3e-08 33.1 0.0 6.9e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3375 PF11855.8 gi|294494849|ref|YP_003541342.1| - 0.031 13.2 0.4 0.054 12.4 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3375) HTH_3 PF01381.22 gi|294494850|ref|YP_003541343.1| - 1.1e-07 31.8 0.0 3.6e-07 30.1 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|294494850|ref|YP_003541343.1| - 0.00015 21.7 0.0 0.00043 20.2 0.0 1.8 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|294494850|ref|YP_003541343.1| - 0.014 15.7 0.0 0.054 13.8 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|294494850|ref|YP_003541343.1| - 0.07 13.2 0.0 0.3 11.2 0.0 1.9 2 0 0 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Glyco_hydro_3 PF00933.21 gi|294494850|ref|YP_003541343.1| - 0.076 12.4 0.0 1.5 8.1 0.0 2.0 2 0 0 2 2 2 0 Glycosyl hydrolase family 3 N terminal domain ACP_syn_III_C PF08541.10 gi|294494851|ref|YP_003541344.1| - 7.5e-12 45.3 0.0 1.9e-11 44.0 0.0 1.7 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.10 gi|294494851|ref|YP_003541344.1| - 7.7e-07 29.0 0.0 4e-05 23.4 0.0 2.4 2 1 1 3 3 3 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.23 gi|294494851|ref|YP_003541344.1| - 0.00094 18.6 0.3 0.0015 17.9 0.3 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_N PF01154.17 gi|294494851|ref|YP_003541344.1| - 0.002 18.0 0.2 0.0026 17.6 0.2 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Phosphatase PF15698.5 gi|294494851|ref|YP_003541344.1| - 0.059 12.5 0.1 0.085 12.0 0.1 1.2 1 0 0 1 1 1 0 Phosphatase WYL_3 PF18488.1 gi|294494851|ref|YP_003541344.1| - 0.064 13.6 0.1 0.19 12.1 0.0 1.8 2 0 0 2 2 2 0 WYL domain ACP_syn_III PF08545.10 gi|294494851|ref|YP_003541344.1| - 0.25 11.2 6.5 0.15 12.0 1.4 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 gi|294494852|ref|YP_003541345.1| - 1.5e-26 93.3 3.8 5.3e-26 91.5 3.8 1.9 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|294494852|ref|YP_003541345.1| - 4.5e-13 48.9 3.1 5.9e-12 45.3 2.1 2.6 1 1 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|294494852|ref|YP_003541345.1| - 8.2e-08 32.1 9.5 1.1e-06 28.4 7.0 3.3 3 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|294494852|ref|YP_003541345.1| - 0.011 15.7 0.6 0.29 11.2 0.0 2.9 2 0 0 2 2 2 0 Beta-ketoacyl synthase, C-terminal domain OB_aCoA_assoc PF01796.17 gi|294494853|ref|YP_003541346.1| - 8.2e-20 70.6 0.0 1.1e-19 70.2 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|294494853|ref|YP_003541346.1| - 4.1e-10 39.3 2.2 5.6e-10 38.9 2.2 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C3HC4_3 PF13920.6 gi|294494853|ref|YP_003541346.1| - 0.1 12.5 1.7 0.15 12.0 1.7 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) FdhE PF04216.12 gi|294494853|ref|YP_003541346.1| - 0.22 11.4 0.3 0.26 11.1 0.3 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation CYTH PF01928.21 gi|294494854|ref|YP_003541347.1| - 2.4e-34 118.8 4.0 2.7e-34 118.6 4.0 1.0 1 0 0 1 1 1 1 CYTH domain Glt_symporter PF03616.14 gi|294494855|ref|YP_003541348.1| - 3.9e-12 45.5 19.3 7.1e-11 41.4 19.3 2.2 1 1 0 1 1 1 1 Sodium/glutamate symporter tRNA-synt_1g PF09334.11 gi|294494856|ref|YP_003541349.1| - 3.4e-151 503.4 0.1 4.5e-151 503.0 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|294494856|ref|YP_003541349.1| - 2.6e-27 94.8 0.6 5e-27 93.8 0.6 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|294494856|ref|YP_003541349.1| - 2.7e-19 68.9 0.2 4.6e-09 35.1 0.1 4.1 2 2 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|294494856|ref|YP_003541349.1| - 4.3e-15 55.9 0.1 3.6e-10 39.7 0.0 2.7 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|294494856|ref|YP_003541349.1| - 4.1e-13 49.6 0.6 6.7e-13 48.9 0.6 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|294494856|ref|YP_003541349.1| - 0.00043 19.3 0.1 0.037 12.9 0.0 2.6 2 0 0 2 2 2 1 tRNA synthetases class I (K) BBIP10 PF14777.6 gi|294494856|ref|YP_003541349.1| - 0.052 13.1 0.1 0.14 11.7 0.1 1.7 1 0 0 1 1 1 0 Cilia BBSome complex subunit 10 Peptidase_S49 PF01343.18 gi|294494857|ref|YP_003541350.1| - 5.5e-42 143.3 0.6 8e-42 142.8 0.6 1.2 1 0 0 1 1 1 1 Peptidase family S49 Asparaginase_C PF17763.1 gi|294494857|ref|YP_003541350.1| - 0.0051 17.0 0.2 0.0093 16.2 0.2 1.4 1 0 0 1 1 1 1 Glutaminase/Asparaginase C-terminal domain Tubulin PF00091.25 gi|294494857|ref|YP_003541350.1| - 0.088 13.0 0.3 0.17 12.1 0.3 1.4 1 0 0 1 1 1 0 Tubulin/FtsZ family, GTPase domain Nitroreductase PF00881.24 gi|294494858|ref|YP_003541351.1| - 1.4e-26 93.5 0.0 1.7e-26 93.3 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family DUF5594 PF18057.1 gi|294494858|ref|YP_003541351.1| - 0.057 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5594) IF-2B PF01008.17 gi|294494859|ref|YP_003541352.1| - 7.4e-89 297.7 1.1 8.4e-89 297.5 1.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF1246 PF06849.12 gi|294494859|ref|YP_003541352.1| - 0.036 14.0 0.1 0.092 12.7 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1246) Rhodanese PF00581.20 gi|294494859|ref|YP_003541352.1| - 0.053 14.0 0.0 0.1 13.1 0.0 1.5 1 0 0 1 1 1 0 Rhodanese-like domain Aldedh PF00171.22 gi|294494861|ref|YP_003541354.1| - 1.1e-132 442.8 0.0 1.3e-132 442.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family NTP_transf_9 PF04248.12 gi|294494862|ref|YP_003541355.1| - 2.5e-30 104.2 0.1 2.7e-30 104.1 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF427) Met_10 PF02475.16 gi|294494863|ref|YP_003541356.1| - 1.1e-44 152.6 0.0 1.4e-44 152.3 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|294494863|ref|YP_003541356.1| - 1.6e-05 24.6 0.0 2.2e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PRMT5 PF05185.16 gi|294494863|ref|YP_003541356.1| - 0.0073 16.2 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase MTS PF05175.14 gi|294494863|ref|YP_003541356.1| - 0.05 13.2 0.0 0.083 12.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|294494863|ref|YP_003541356.1| - 0.14 11.7 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase tRNA_deacylase PF04414.12 gi|294494864|ref|YP_003541357.1| - 3.7e-62 209.5 0.0 5.2e-62 209.0 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Tubulin PF00091.25 gi|294494865|ref|YP_003541358.1| - 2.7e-40 138.7 0.8 3.8e-40 138.2 0.8 1.2 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|294494865|ref|YP_003541358.1| - 1.3e-34 118.4 0.9 4e-34 116.8 0.9 1.9 1 0 0 1 1 1 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|294494865|ref|YP_003541358.1| - 0.0066 16.4 0.6 0.0066 16.4 0.6 2.2 3 0 0 3 3 3 1 NAD(P)H-binding Tubulin_2 PF13809.6 gi|294494865|ref|YP_003541358.1| - 0.72 9.0 3.8 0.18 11.0 0.1 1.9 2 0 0 2 2 2 0 Tubulin like SecE PF00584.20 gi|294494866|ref|YP_003541359.1| - 1.6e-06 28.0 0.3 1.6e-06 27.9 0.3 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Spt5-NGN PF03439.13 gi|294494867|ref|YP_003541360.1| - 1.2e-22 79.6 0.1 1.8e-22 79.0 0.1 1.2 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|294494867|ref|YP_003541360.1| - 8.1e-07 28.8 2.1 8e-06 25.6 0.3 2.7 3 0 0 3 3 3 1 KOW motif Ribosomal_L11_N PF03946.14 gi|294494868|ref|YP_003541361.1| - 8.6e-26 89.6 0.4 1.3e-25 89.0 0.4 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|294494868|ref|YP_003541361.1| - 1.2e-17 64.1 1.5 2e-17 63.5 0.2 1.8 2 0 0 2 2 2 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.21 gi|294494869|ref|YP_003541362.1| - 5.8e-47 160.1 0.0 7.1e-47 159.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.20 gi|294494870|ref|YP_003541363.1| - 1.1e-25 89.6 0.0 2.3e-25 88.7 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|294494870|ref|YP_003541363.1| - 6e-18 64.6 0.0 1.1e-17 63.7 0.0 1.4 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|294494870|ref|YP_003541363.1| - 4.1e-05 24.1 22.1 0.00023 21.7 22.1 2.2 1 1 0 1 1 1 1 60s Acidic ribosomal protein DUF2383 PF09537.10 gi|294494870|ref|YP_003541363.1| - 0.039 14.3 0.1 0.039 14.3 0.1 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF2383) WRNPLPNID PF15017.6 gi|294494870|ref|YP_003541363.1| - 1.1 10.2 4.1 2.5 9.0 4.1 1.6 1 0 0 1 1 1 0 Putative WW-binding domain and destruction box Ribosomal_60s PF00428.19 gi|294494871|ref|YP_003541364.1| - 7.4e-18 64.9 23.8 8.9e-18 64.7 23.8 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein DUF2868 PF11067.8 gi|294494871|ref|YP_003541364.1| - 0.075 12.5 1.7 0.088 12.3 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2868) PepSY_2 PF13670.6 gi|294494871|ref|YP_003541364.1| - 0.15 12.1 10.7 2 8.4 0.1 2.1 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF3486 PF11985.8 gi|294494871|ref|YP_003541364.1| - 2.7 8.4 11.4 3.3 8.1 11.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3486) Radical_SAM PF04055.21 gi|294494872|ref|YP_003541365.1| - 2.1e-13 51.0 0.0 3.4e-13 50.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily DUF3463 PF11946.8 gi|294494872|ref|YP_003541365.1| - 4.7e-06 26.4 0.1 8.6e-06 25.6 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3463) Fer4_12 PF13353.6 gi|294494872|ref|YP_003541365.1| - 0.033 14.4 0.0 0.068 13.4 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain SPASM PF13186.6 gi|294494872|ref|YP_003541365.1| - 0.45 11.1 4.7 0.19 12.3 0.6 2.4 3 0 0 3 3 3 0 Iron-sulfur cluster-binding domain SAM_adeno_trans PF01887.16 gi|294494873|ref|YP_003541366.1| - 3e-77 259.2 0.0 3.3e-77 259.1 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase SSF PF00474.17 gi|294494874|ref|YP_003541367.1| - 1.5e-35 122.9 33.5 1.5e-35 122.9 33.5 1.5 2 0 0 2 2 2 1 Sodium:solute symporter family Spore_permease PF03845.13 gi|294494874|ref|YP_003541367.1| - 0.00022 20.2 10.8 0.00022 20.2 10.8 2.7 2 1 1 3 3 3 1 Spore germination protein Sucrose_synth PF00862.19 gi|294494875|ref|YP_003541368.1| - 0.1 10.9 0.0 0.19 10.0 0.0 1.5 1 0 0 1 1 1 0 Sucrose synthase Lactamase_B_2 PF12706.7 gi|294494876|ref|YP_003541369.1| - 1e-32 113.3 0.4 1.4e-32 112.9 0.4 1.0 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|294494876|ref|YP_003541369.1| - 2e-21 76.9 0.3 2.9e-21 76.4 0.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|294494876|ref|YP_003541369.1| - 1.1e-10 41.6 0.2 1.7e-10 41.1 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AAA PF00004.29 gi|294494877|ref|YP_003541370.1| - 4.4e-38 130.7 0.0 9.7e-38 129.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|294494877|ref|YP_003541370.1| - 5.8e-08 32.4 0.2 1.4e-07 31.2 0.2 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_18 PF13238.6 gi|294494877|ref|YP_003541370.1| - 7e-08 33.1 0.0 2.1e-07 31.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|294494877|ref|YP_003541370.1| - 1.4e-07 31.5 0.1 6.1e-07 29.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|294494877|ref|YP_003541370.1| - 2.4e-05 24.8 0.2 0.0025 18.2 0.0 2.9 1 1 2 3 3 3 1 AAA ATPase domain DUF815 PF05673.13 gi|294494877|ref|YP_003541370.1| - 5.1e-05 22.6 0.0 0.00013 21.2 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|294494877|ref|YP_003541370.1| - 8.2e-05 22.9 0.6 0.016 15.5 0.0 3.3 3 1 1 4 4 3 1 AAA domain AAA_33 PF13671.6 gi|294494877|ref|YP_003541370.1| - 0.00019 21.6 0.1 0.00078 19.6 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|294494877|ref|YP_003541370.1| - 0.00024 21.2 0.0 0.0011 19.2 0.0 2.1 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_28 PF13521.6 gi|294494877|ref|YP_003541370.1| - 0.00045 20.5 0.0 0.0018 18.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|294494877|ref|YP_003541370.1| - 0.001 18.3 0.0 0.0021 17.3 0.0 1.5 1 0 0 1 1 1 1 TIP49 P-loop domain RuvB_N PF05496.12 gi|294494877|ref|YP_003541370.1| - 0.0017 18.2 0.1 0.0034 17.2 0.1 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|294494877|ref|YP_003541370.1| - 0.002 17.5 0.0 0.0052 16.2 0.0 1.6 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|294494877|ref|YP_003541370.1| - 0.0036 16.8 0.0 0.0081 15.7 0.0 1.5 1 1 0 1 1 1 1 P-loop containing dynein motor region Sigma54_activ_2 PF14532.6 gi|294494877|ref|YP_003541370.1| - 0.0041 17.2 0.0 0.0092 16.1 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_17 PF13207.6 gi|294494877|ref|YP_003541370.1| - 0.0045 17.4 0.4 0.18 12.2 0.0 2.6 2 0 0 2 2 2 1 AAA domain CPT PF07931.12 gi|294494877|ref|YP_003541370.1| - 0.0061 16.4 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_24 PF13479.6 gi|294494877|ref|YP_003541370.1| - 0.0072 16.1 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|294494877|ref|YP_003541370.1| - 0.0083 15.9 0.3 0.079 12.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|294494877|ref|YP_003541370.1| - 0.01 15.6 0.0 0.026 14.3 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein SKI PF01202.22 gi|294494877|ref|YP_003541370.1| - 0.013 15.6 0.0 0.032 14.4 0.0 1.7 1 0 0 1 1 1 0 Shikimate kinase MMR_HSR1 PF01926.23 gi|294494877|ref|YP_003541370.1| - 0.02 15.0 0.0 0.05 13.7 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_11 PF13086.6 gi|294494877|ref|YP_003541370.1| - 0.024 14.4 0.0 0.062 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|294494877|ref|YP_003541370.1| - 0.025 14.3 0.0 0.057 13.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain ABC_tran PF00005.27 gi|294494877|ref|YP_003541370.1| - 0.028 14.9 0.0 0.083 13.4 0.0 1.8 1 1 1 2 2 1 0 ABC transporter AAA_3 PF07726.11 gi|294494877|ref|YP_003541370.1| - 0.034 14.0 0.0 0.063 13.1 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Cytidylate_kin PF02224.18 gi|294494877|ref|YP_003541370.1| - 0.04 13.6 0.1 0.096 12.4 0.0 1.7 2 0 0 2 2 1 0 Cytidylate kinase Rad17 PF03215.15 gi|294494877|ref|YP_003541370.1| - 0.051 13.5 0.0 0.098 12.6 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_25 PF13481.6 gi|294494877|ref|YP_003541370.1| - 0.063 12.8 0.4 0.66 9.5 0.4 2.3 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|294494877|ref|YP_003541370.1| - 0.072 13.4 0.5 0.32 11.3 0.4 2.2 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|294494877|ref|YP_003541370.1| - 0.075 12.4 0.1 14 5.0 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein AAA_14 PF13173.6 gi|294494877|ref|YP_003541370.1| - 0.075 13.1 0.0 0.29 11.2 0.0 2.0 1 0 0 1 1 1 0 AAA domain Guanylate_kin PF00625.21 gi|294494877|ref|YP_003541370.1| - 0.089 12.5 0.1 5 6.8 0.0 2.6 1 1 1 2 2 2 0 Guanylate kinase RNA_helicase PF00910.22 gi|294494877|ref|YP_003541370.1| - 0.14 12.6 0.0 0.32 11.4 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.6 gi|294494877|ref|YP_003541370.1| - 0.65 10.5 3.6 3.8 8.0 0.0 2.9 1 1 1 2 2 2 0 AAA domain Stork_head PF10264.9 gi|294494878|ref|YP_003541371.1| - 0.03 14.5 0.0 0.07 13.3 0.0 1.7 1 1 0 1 1 1 0 Winged helix Storkhead-box1 domain COR PF16095.5 gi|294494878|ref|YP_003541371.1| - 0.036 13.9 0.4 0.4 10.5 0.2 2.0 1 1 1 2 2 2 0 C-terminal of Roc, COR, domain DUF977 PF06163.11 gi|294494878|ref|YP_003541371.1| - 0.064 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) DUF2543 PF10820.8 gi|294494878|ref|YP_003541371.1| - 0.07 13.3 0.1 0.11 12.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2543) RXLR PF16810.5 gi|294494878|ref|YP_003541371.1| - 0.2 12.1 1.4 2.3 8.7 1.4 2.0 1 1 0 1 1 1 0 RXLR phytopathogen effector protein, Avirulence activity Ribosomal_S27e PF01667.17 gi|294494878|ref|YP_003541371.1| - 0.21 11.3 4.6 0.38 10.5 4.6 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 Elf1 PF05129.13 gi|294494878|ref|YP_003541371.1| - 0.74 9.9 5.3 2.6 8.2 5.3 1.9 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Prenyltransf PF01255.19 gi|294494879|ref|YP_003541372.1| - 1.5e-27 96.6 0.0 9.6e-27 94.0 0.0 1.9 1 1 1 2 2 2 1 Putative undecaprenyl diphosphate synthase MMR_HSR1_C PF08438.10 gi|294494880|ref|YP_003541373.1| - 1.3e-30 106.2 0.0 3.7e-30 104.8 0.0 1.7 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|294494880|ref|YP_003541373.1| - 3.5e-20 72.2 0.0 1.5e-19 70.2 0.0 2.0 1 1 1 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|294494880|ref|YP_003541373.1| - 4.4e-13 49.1 0.0 1.1e-12 47.9 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|294494880|ref|YP_003541373.1| - 3.7e-09 36.3 0.7 2e-07 30.7 0.0 2.7 3 0 0 3 3 3 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|294494880|ref|YP_003541373.1| - 0.00085 19.5 0.1 0.14 12.4 0.0 2.8 1 1 1 2 2 2 1 Protein of unknown function (DUF933) MMR_HSR1_Xtn PF16897.5 gi|294494880|ref|YP_003541373.1| - 0.054 13.5 0.1 0.17 11.9 0.0 1.8 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain ThiS PF02597.20 gi|294494880|ref|YP_003541373.1| - 0.097 13.3 0.0 0.48 11.1 0.0 2.1 2 0 0 2 2 2 0 ThiS family Cupin_2 PF07883.11 gi|294494880|ref|YP_003541373.1| - 0.17 11.6 0.0 0.36 10.6 0.0 1.5 1 0 0 1 1 1 0 Cupin domain HATPase_c PF02518.26 gi|294494881|ref|YP_003541374.1| - 2e-33 115.2 0.1 5.5e-33 113.8 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|294494881|ref|YP_003541374.1| - 1.3e-16 60.3 0.0 3.3e-16 59.1 0.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|294494881|ref|YP_003541374.1| - 5.9e-15 56.1 0.0 6.9e-08 33.2 0.0 2.6 2 0 0 2 2 2 2 GAF domain GAF_2 PF13185.6 gi|294494881|ref|YP_003541374.1| - 4e-11 43.4 0.0 6.3e-05 23.3 0.0 2.5 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.6 gi|294494881|ref|YP_003541374.1| - 0.0003 21.1 0.0 1.3 9.4 0.0 3.0 2 2 0 2 2 2 2 GAF domain HATPase_c_5 PF14501.6 gi|294494881|ref|YP_003541374.1| - 0.011 15.7 1.0 0.056 13.4 0.0 2.8 2 1 0 2 2 2 0 GHKL domain HATPase_c_3 PF13589.6 gi|294494881|ref|YP_003541374.1| - 0.054 13.3 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|294494881|ref|YP_003541374.1| - 0.077 13.0 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain p6 PF17548.2 gi|294494881|ref|YP_003541374.1| - 0.11 12.4 0.0 0.55 10.2 0.0 2.2 2 0 0 2 2 2 0 Histone-like Protein p6 AATF-Che1 PF13339.6 gi|294494881|ref|YP_003541374.1| - 0.22 12.2 0.2 0.22 12.2 0.2 2.7 3 1 0 3 3 3 0 Apoptosis antagonizing transcription factor EF-hand_2 PF09068.11 gi|294494881|ref|YP_003541374.1| - 1.6 8.9 4.6 3.9 7.6 0.1 2.9 3 0 0 3 3 3 0 EF hand Cytochrome_cB PF11783.8 gi|294494883|ref|YP_003541376.1| - 6.8e-61 205.2 1.1 6.8e-61 205.2 1.1 4.1 5 0 0 5 5 5 1 Cytochrome c bacterial Cytochrome_C7 PF14522.6 gi|294494883|ref|YP_003541376.1| - 1.5e-06 28.1 31.1 0.073 13.1 11.7 5.3 2 1 3 5 5 5 4 Cytochrome c7 and related cytochrome c Cytochrom_c3_2 PF14537.6 gi|294494883|ref|YP_003541376.1| - 0.00045 20.6 32.0 0.037 14.5 1.1 4.7 3 2 1 4 4 4 2 Cytochrome c3 Paired_CXXCH_1 PF09699.10 gi|294494883|ref|YP_003541376.1| - 0.0015 18.2 37.2 0.11 12.3 1.8 6.1 5 2 2 7 7 7 4 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_CIII PF02085.16 gi|294494883|ref|YP_003541376.1| - 0.034 14.5 24.7 1 9.7 6.3 4.7 3 1 0 4 4 4 0 Class III cytochrome C family Cytochrom_NNT PF03264.14 gi|294494883|ref|YP_003541376.1| - 4.9 6.8 32.4 1.5 8.5 4.0 5.4 3 2 2 5 5 5 0 NapC/NirT cytochrome c family, N-terminal region Cpn60_TCP1 PF00118.24 gi|294494884|ref|YP_003541377.1| - 9.5e-179 595.1 18.2 1.1e-178 594.9 18.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family BioY PF02632.14 gi|294494885|ref|YP_003541378.1| - 8.2e-41 139.2 26.2 1.2e-40 138.7 26.2 1.2 1 0 0 1 1 1 1 BioY family Pox_A9 PF04835.12 gi|294494885|ref|YP_003541378.1| - 0.015 15.5 6.0 1.6 9.0 0.4 2.7 2 0 0 2 2 2 0 A9 protein conserved region ECF_trnsprt PF12822.7 gi|294494885|ref|YP_003541378.1| - 0.019 15.1 34.3 0.033 14.3 34.4 1.5 1 1 0 1 1 1 0 ECF transporter, substrate-specific component TfoX_C PF04994.13 gi|294494885|ref|YP_003541378.1| - 0.22 11.7 0.0 0.35 11.0 0.0 1.2 1 0 0 1 1 1 0 TfoX C-terminal domain 5TM-5TMR_LYT PF07694.12 gi|294494885|ref|YP_003541378.1| - 3.3 7.2 23.5 37 3.8 23.5 2.2 1 1 0 1 1 1 0 5TMR of 5TMR-LYT ABC_tran PF00005.27 gi|294494886|ref|YP_003541379.1| - 1.5e-24 87.1 0.0 3e-24 86.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|294494886|ref|YP_003541379.1| - 1.5e-09 37.6 2.9 5.7e-08 32.5 2.9 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|294494886|ref|YP_003541379.1| - 2.6e-08 34.0 1.7 0.0024 17.7 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|294494886|ref|YP_003541379.1| - 6.2e-05 22.7 0.0 0.00014 21.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|294494886|ref|YP_003541379.1| - 0.0009 19.1 0.0 0.0015 18.3 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|294494886|ref|YP_003541379.1| - 0.0015 18.3 0.0 0.0055 16.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|294494886|ref|YP_003541379.1| - 0.0055 17.1 0.0 0.018 15.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|294494886|ref|YP_003541379.1| - 0.0059 17.0 0.0 0.0096 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|294494886|ref|YP_003541379.1| - 0.0078 16.1 0.5 2.2 8.2 0.1 2.2 2 0 0 2 2 2 2 NTPase AAA_22 PF13401.6 gi|294494886|ref|YP_003541379.1| - 0.009 16.3 0.1 0.038 14.3 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|294494886|ref|YP_003541379.1| - 0.014 15.6 0.0 0.056 13.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|294494886|ref|YP_003541379.1| - 0.021 15.4 0.1 0.037 14.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|294494886|ref|YP_003541379.1| - 0.025 14.8 0.0 0.045 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|294494886|ref|YP_003541379.1| - 0.028 14.1 0.6 0.37 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|294494886|ref|YP_003541379.1| - 0.035 14.0 0.0 0.074 13.0 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|294494886|ref|YP_003541379.1| - 0.065 13.1 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|294494886|ref|YP_003541379.1| - 0.07 13.1 0.3 0.35 10.9 0.0 2.1 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|294494886|ref|YP_003541379.1| - 0.076 12.6 0.0 1.2 8.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|294494886|ref|YP_003541379.1| - 0.11 11.5 0.0 0.2 10.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Mg_chelatase PF01078.21 gi|294494886|ref|YP_003541379.1| - 0.13 11.6 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MukB PF04310.12 gi|294494886|ref|YP_003541379.1| - 0.14 11.9 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal ABC_tran PF00005.27 gi|294494887|ref|YP_003541380.1| - 6.3e-27 94.8 0.0 1.1e-26 93.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|294494887|ref|YP_003541380.1| - 2.6e-09 37.3 0.2 0.00036 20.5 0.0 2.5 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|294494887|ref|YP_003541380.1| - 0.00014 21.4 0.0 0.0012 18.3 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|294494887|ref|YP_003541380.1| - 0.0068 16.1 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|294494887|ref|YP_003541380.1| - 0.0081 16.6 0.0 0.012 16.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|294494887|ref|YP_003541380.1| - 0.0082 15.9 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|294494887|ref|YP_003541380.1| - 0.0099 16.1 0.0 0.018 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|294494887|ref|YP_003541380.1| - 0.015 15.3 0.0 0.03 14.3 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|294494887|ref|YP_003541380.1| - 0.022 15.3 0.0 0.2 12.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|294494887|ref|YP_003541380.1| - 0.07 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 NTPase CoaE PF01121.20 gi|294494887|ref|YP_003541380.1| - 0.076 12.7 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Dephospho-CoA kinase PRK PF00485.18 gi|294494887|ref|YP_003541380.1| - 0.08 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MeaB PF03308.16 gi|294494887|ref|YP_003541380.1| - 0.13 11.2 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB SbcCD_C PF13558.6 gi|294494887|ref|YP_003541380.1| - 0.14 12.4 0.1 1.1 9.6 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 gi|294494887|ref|YP_003541380.1| - 0.15 12.2 0.1 0.25 11.5 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase cobW PF02492.19 gi|294494887|ref|YP_003541380.1| - 0.15 11.6 0.1 0.37 10.4 0.1 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|294494887|ref|YP_003541380.1| - 0.18 11.7 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase CbiQ PF02361.16 gi|294494888|ref|YP_003541381.1| - 4.9e-32 111.3 11.7 4.9e-32 111.3 11.7 1.6 1 1 1 2 2 2 1 Cobalt transport protein Hydantoinase_A PF01968.18 gi|294494889|ref|YP_003541382.1| - 6e-33 114.3 0.2 6e-33 114.3 0.2 2.9 4 1 0 4 4 4 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|294494889|ref|YP_003541382.1| - 1e-32 113.3 3.8 1.6e-28 99.7 0.4 3.3 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|294494889|ref|YP_003541382.1| - 1.1e-05 24.3 0.6 0.047 12.3 0.1 2.2 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.20 gi|294494889|ref|YP_003541382.1| - 0.018 14.6 0.1 0.83 9.1 0.0 2.4 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family StbA PF06406.11 gi|294494889|ref|YP_003541382.1| - 0.095 11.9 0.1 0.17 11.0 0.1 1.3 1 0 0 1 1 1 0 StbA protein ROK PF00480.20 gi|294494889|ref|YP_003541382.1| - 0.13 11.7 0.2 0.29 10.6 0.0 1.7 2 0 0 2 2 2 0 ROK family FtsA PF14450.6 gi|294494889|ref|YP_003541382.1| - 0.28 11.6 1.5 0.7 10.3 0.2 2.2 2 0 0 2 2 2 0 Cell division protein FtsA F_bP_aldolase PF01116.20 gi|294494891|ref|YP_003541384.1| - 1.7e-31 109.8 0.0 2.2e-31 109.4 0.0 1.1 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II Tagatose_6_P_K PF08013.11 gi|294494891|ref|YP_003541384.1| - 1.7e-10 40.2 0.0 2.2e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 Tagatose 6 phosphate kinase DrsE_2 PF13686.6 gi|294494892|ref|YP_003541385.1| - 6.9e-07 29.3 0.2 7.5e-07 29.2 0.2 1.2 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|294494892|ref|YP_003541385.1| - 5.1e-06 26.8 0.0 5.8e-06 26.7 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DUF167 PF02594.16 gi|294494893|ref|YP_003541386.1| - 7e-17 61.3 0.1 8.4e-17 61.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 DUF2805 PF10985.8 gi|294494893|ref|YP_003541386.1| - 0.066 13.6 0.0 0.1 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2805) F420_oxidored PF03807.17 gi|294494894|ref|YP_003541387.1| - 8.4e-20 71.2 0.2 1.5e-19 70.4 0.2 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 gi|294494894|ref|YP_003541387.1| - 0.0048 17.3 0.1 0.009 16.4 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain ApbA PF02558.16 gi|294494894|ref|YP_003541387.1| - 0.0093 15.6 0.0 0.021 14.5 0.0 1.6 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Glyco_transf_7N PF13733.6 gi|294494894|ref|YP_003541387.1| - 0.038 13.6 0.0 0.059 13.0 0.0 1.2 1 0 0 1 1 1 0 N-terminal region of glycosyl transferase group 7 NAD_Gly3P_dh_N PF01210.23 gi|294494894|ref|YP_003541387.1| - 0.048 13.7 0.3 0.11 12.4 0.3 1.6 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.17 gi|294494894|ref|YP_003541387.1| - 0.055 12.5 0.0 0.08 11.9 0.0 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase IlvN PF07991.12 gi|294494894|ref|YP_003541387.1| - 0.06 12.9 0.3 0.17 11.5 0.3 1.7 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Glu_synthase PF01645.17 gi|294494895|ref|YP_003541388.1| - 6.4e-13 48.6 0.0 2.2e-09 37.0 0.0 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase Copine PF07002.16 gi|294494895|ref|YP_003541388.1| - 0.21 11.0 0.0 0.38 10.2 0.0 1.3 1 0 0 1 1 1 0 Copine P-II PF00543.22 gi|294494897|ref|YP_003541390.1| - 2.1e-39 134.2 0.5 2.4e-39 134.1 0.5 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II FRD2 PF03197.13 gi|294494897|ref|YP_003541390.1| - 0.11 12.8 0.1 0.22 11.8 0.1 1.5 1 0 0 1 1 1 0 Bacteriophage FRD2 protein Ammonium_transp PF00909.21 gi|294494898|ref|YP_003541391.1| - 4.7e-117 391.1 39.0 5.9e-117 390.7 39.0 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family DUF2178 PF09946.9 gi|294494899|ref|YP_003541392.1| - 5.7e-28 97.2 3.8 6.9e-28 96.9 3.8 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) DUF2269 PF10027.9 gi|294494899|ref|YP_003541392.1| - 0.0037 17.3 0.5 0.0064 16.5 0.5 1.3 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2269) 7TMR-DISM_7TM PF07695.11 gi|294494899|ref|YP_003541392.1| - 0.022 14.7 8.5 0.037 13.9 8.5 1.4 1 1 0 1 1 1 0 7TM diverse intracellular signalling CD34_antigen PF06365.12 gi|294494899|ref|YP_003541392.1| - 0.27 10.8 0.1 0.41 10.2 0.1 1.3 1 0 0 1 1 1 0 CD34/Podocalyxin family HTH_3 PF01381.22 gi|294494900|ref|YP_003541393.1| - 5.5e-17 61.6 0.0 6e-17 61.5 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 gi|294494900|ref|YP_003541393.1| - 2.4e-08 34.3 0.0 3.1e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.7 gi|294494900|ref|YP_003541393.1| - 4.7e-08 32.9 0.0 5.7e-08 32.7 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|294494900|ref|YP_003541393.1| - 2.1e-07 31.2 0.0 2.2e-07 31.1 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|294494900|ref|YP_003541393.1| - 0.00019 21.2 0.1 0.00023 21.0 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|294494900|ref|YP_003541393.1| - 0.00021 21.2 0.1 0.00034 20.5 0.1 1.3 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 gi|294494900|ref|YP_003541393.1| - 0.0015 18.0 0.1 0.0022 17.5 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|294494900|ref|YP_003541393.1| - 0.012 15.5 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|294494900|ref|YP_003541393.1| - 0.017 15.0 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_37 PF13744.6 gi|294494900|ref|YP_003541393.1| - 0.043 13.8 0.0 0.057 13.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|294494900|ref|YP_003541393.1| - 0.048 13.5 0.0 0.052 13.4 0.0 1.2 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4_2 PF08281.12 gi|294494900|ref|YP_003541393.1| - 0.055 13.1 0.1 3.4 7.4 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|294494900|ref|YP_003541393.1| - 0.079 12.5 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|294494900|ref|YP_003541393.1| - 0.099 12.3 0.1 0.17 11.6 0.1 1.4 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_38 PF13936.6 gi|294494900|ref|YP_003541393.1| - 0.11 12.2 0.1 0.15 11.8 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Gln-synt_C PF00120.24 gi|294494901|ref|YP_003541394.1| - 6.2e-130 433.2 0.0 7.4e-130 432.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|294494901|ref|YP_003541394.1| - 1e-30 105.3 0.1 1.9e-30 104.4 0.1 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|294494901|ref|YP_003541394.1| - 0.022 14.6 0.0 0.07 13.0 0.0 1.9 1 1 0 1 1 1 0 Glutamine synthetase N-terminal domain PKD PF00801.20 gi|294494902|ref|YP_003541395.1| - 3.6e-29 100.4 28.3 1.3e-16 60.2 2.9 4.4 2 1 2 4 4 4 2 PKD domain Pilin_N PF07790.11 gi|294494902|ref|YP_003541395.1| - 1.4e-12 48.3 0.1 1.4e-12 48.3 0.1 4.3 5 1 0 5 5 4 1 Archaeal Type IV pilin, N-terminal BiPBP_C PF06832.12 gi|294494902|ref|YP_003541395.1| - 1.3e-06 28.3 0.0 0.043 13.9 0.0 4.1 4 0 0 4 4 4 2 Penicillin-Binding Protein C-terminus Family PKD_3 PF16820.5 gi|294494902|ref|YP_003541395.1| - 0.00047 19.9 5.4 2.7 7.8 0.1 4.0 3 0 0 3 3 3 3 PKD-like domain ChitinaseA_N PF08329.10 gi|294494902|ref|YP_003541395.1| - 0.0018 18.0 1.4 0.45 10.2 0.0 4.1 4 0 0 4 4 4 1 Chitinase A, N-terminal domain DUF4625 PF15418.6 gi|294494902|ref|YP_003541395.1| - 0.0023 18.2 10.7 0.29 11.4 0.2 4.2 3 1 1 4 4 4 2 Domain of unknown function (DUF4625) TcfC PF16967.5 gi|294494902|ref|YP_003541395.1| - 0.0092 15.4 1.1 1.7 8.2 0.1 2.7 2 0 0 2 2 2 1 E-set like domain DUF5011 PF16403.5 gi|294494902|ref|YP_003541395.1| - 0.022 14.9 0.7 0.022 14.9 0.7 4.9 6 0 0 6 6 5 0 Domain of unknown function (DUF5011) DUF1191 PF06697.12 gi|294494902|ref|YP_003541395.1| - 0.13 12.1 0.1 1.2 8.9 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1191) Y_Y_Y PF07495.13 gi|294494902|ref|YP_003541395.1| - 0.25 11.3 15.2 0.96 9.5 2.6 4.2 4 0 0 4 4 4 0 Y_Y_Y domain MG2 PF01835.19 gi|294494902|ref|YP_003541395.1| - 0.43 11.1 4.3 8.8 6.9 0.3 3.3 3 0 0 3 3 3 0 MG2 domain He_PIG PF05345.12 gi|294494902|ref|YP_003541395.1| - 0.84 9.9 18.8 0.32 11.2 1.9 4.4 3 0 0 3 3 3 0 Putative Ig domain HYR PF02494.16 gi|294494902|ref|YP_003541395.1| - 3.2 8.1 6.8 0.88 9.9 0.5 3.1 3 0 0 3 3 2 0 HYR domain BPL_N PF09825.9 gi|294494903|ref|YP_003541396.1| - 0.017 14.3 0.1 0.13 11.3 0.0 1.9 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal DUF1894 PF08979.11 gi|294494904|ref|YP_003541397.1| - 4e-34 116.9 0.1 4.4e-34 116.7 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) DUF295 PF03478.18 gi|294494904|ref|YP_003541397.1| - 0.14 11.7 0.2 0.36 10.4 0.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF295) AIRS_C PF02769.22 gi|294494905|ref|YP_003541398.1| - 4.1e-22 79.0 0.0 7.7e-22 78.1 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|294494905|ref|YP_003541398.1| - 5.7e-14 52.5 0.3 1.2e-13 51.5 0.3 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AA_kinase PF00696.28 gi|294494906|ref|YP_003541399.1| - 1e-49 169.3 3.2 1.5e-49 168.8 0.3 2.0 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.6 gi|294494906|ref|YP_003541399.1| - 2.1e-23 81.9 5.7 5.6e-11 42.1 0.0 3.1 3 0 0 3 3 3 2 ACT domain ACT PF01842.25 gi|294494906|ref|YP_003541399.1| - 1.3e-21 76.0 6.0 9.8e-11 41.2 0.2 3.0 3 0 0 3 3 3 2 ACT domain ACT_6 PF13740.6 gi|294494906|ref|YP_003541399.1| - 0.016 15.2 1.5 0.063 13.3 0.1 2.5 3 0 0 3 3 3 0 ACT domain S-layer PF07752.11 gi|294494907|ref|YP_003541400.1| - 1.3e-15 57.1 12.4 8.1e-08 31.6 2.4 2.4 1 1 0 2 2 2 2 S-layer protein TcfC PF16967.5 gi|294494907|ref|YP_003541400.1| - 1.4e-05 24.4 2.3 3.7e-05 23.1 0.2 2.2 2 0 0 2 2 2 1 E-set like domain Big_3 PF07523.12 gi|294494907|ref|YP_003541400.1| - 0.0035 17.6 5.2 0.81 10.0 0.2 4.2 3 1 1 4 4 4 1 Bacterial Ig-like domain (group 3) Big_7 PF17957.1 gi|294494907|ref|YP_003541400.1| - 0.0089 16.8 0.4 0.11 13.3 0.0 2.4 2 0 0 2 2 2 1 Bacterial Ig domain DUF3244 PF11589.8 gi|294494907|ref|YP_003541400.1| - 0.021 14.9 3.2 0.63 10.2 0.3 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF3244) CHB_HEX_C_1 PF13290.6 gi|294494907|ref|YP_003541400.1| - 0.038 14.0 0.3 0.12 12.4 0.3 1.9 1 0 0 1 1 1 0 Chitobiase/beta-hexosaminidase C-terminal domain Big_3_5 PF16640.5 gi|294494907|ref|YP_003541400.1| - 0.045 13.9 0.1 0.7 10.1 0.0 2.8 2 1 1 3 3 3 0 Bacterial Ig-like domain (group 3) ChitinaseA_N PF08329.10 gi|294494907|ref|YP_003541400.1| - 0.068 12.8 0.5 0.56 9.9 0.1 2.5 2 1 0 2 2 2 0 Chitinase A, N-terminal domain PhosphMutase PF10143.9 gi|294494908|ref|YP_003541401.1| - 1e-59 201.2 0.0 1.5e-59 200.7 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|294494908|ref|YP_003541401.1| - 2.7e-39 135.1 0.1 3.1e-39 134.8 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|294494908|ref|YP_003541401.1| - 0.0025 17.4 0.1 0.009 15.6 0.1 1.9 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase HSP20 PF00011.21 gi|294494909|ref|YP_003541402.1| - 5.1e-21 74.7 1.3 6e-21 74.5 1.3 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|294494909|ref|YP_003541402.1| - 1.7e-11 43.5 0.0 2.3e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|294494909|ref|YP_003541402.1| - 9.2e-05 23.4 0.1 0.00013 22.9 0.1 1.2 1 0 0 1 1 1 1 CS domain GvpH PF05455.11 gi|294494909|ref|YP_003541402.1| - 0.021 14.9 0.2 0.035 14.2 0.2 1.4 1 0 0 1 1 1 0 GvpH F420_ligase PF01996.16 gi|294494910|ref|YP_003541403.1| - 2e-58 197.6 0.2 2.5e-58 197.3 0.2 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase dCMP_cyt_deam_1 PF00383.23 gi|294494911|ref|YP_003541404.1| - 3.7e-30 103.8 1.9 5.1e-30 103.3 1.9 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|294494911|ref|YP_003541404.1| - 4e-20 72.0 0.2 5.2e-20 71.6 0.2 1.1 1 0 0 1 1 1 1 MafB19-like deaminase APOBEC_N PF08210.11 gi|294494911|ref|YP_003541404.1| - 0.0043 17.0 0.3 0.0056 16.6 0.3 1.3 1 0 0 1 1 1 1 APOBEC-like N-terminal domain Bd3614-deam PF14439.6 gi|294494911|ref|YP_003541404.1| - 0.0069 16.5 1.0 0.017 15.2 0.4 1.8 1 1 1 2 2 2 1 Bd3614-like deaminase NAD1 PF18778.1 gi|294494911|ref|YP_003541404.1| - 0.16 12.0 0.4 0.22 11.6 0.4 1.2 1 0 0 1 1 1 0 Novel AID APOBEC clade 1 zf-C3HC4 PF00097.25 gi|294494911|ref|YP_003541404.1| - 0.65 9.9 6.9 0.069 13.0 1.7 2.1 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) SecD_SecF PF02355.16 gi|294494912|ref|YP_003541405.1| - 9.3e-32 109.9 14.6 9.3e-32 109.9 14.6 1.7 2 0 0 2 2 2 1 Protein export membrane protein Patched PF02460.18 gi|294494912|ref|YP_003541405.1| - 6.1e-06 24.6 13.1 9.1e-06 24.0 13.1 1.2 1 0 0 1 1 1 1 Patched family Sec_GG PF07549.14 gi|294494912|ref|YP_003541405.1| - 4.4e-05 22.8 0.4 0.00012 21.4 0.1 2.0 1 1 1 2 2 2 1 SecD/SecF GG Motif SecD_SecF PF02355.16 gi|294494913|ref|YP_003541406.1| - 3.4e-16 59.2 8.8 6e-16 58.4 8.8 1.3 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 gi|294494913|ref|YP_003541406.1| - 0.00095 18.2 12.6 0.0016 17.4 12.6 1.3 1 0 0 1 1 1 1 MMPL family Sec_GG PF07549.14 gi|294494913|ref|YP_003541406.1| - 0.075 12.5 0.1 0.24 10.9 0.1 1.9 1 0 0 1 1 1 0 SecD/SecF GG Motif DNA_pol3_delta2 PF13177.6 gi|294494914|ref|YP_003541407.1| - 1.1e-12 48.0 0.0 1.6e-12 47.5 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|294494914|ref|YP_003541407.1| - 9.2e-11 42.0 0.1 2.5e-10 40.6 0.0 1.8 1 1 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|294494914|ref|YP_003541407.1| - 8e-08 32.8 0.0 1.5e-07 31.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|294494914|ref|YP_003541407.1| - 7.3e-05 23.2 0.0 0.00042 20.7 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|294494914|ref|YP_003541407.1| - 0.00015 21.7 0.0 0.00044 20.2 0.0 1.7 2 0 0 2 2 2 1 Rad17 P-loop domain DNA_pol3_delta PF06144.13 gi|294494914|ref|YP_003541407.1| - 0.0009 19.1 0.0 0.0015 18.4 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|294494914|ref|YP_003541407.1| - 0.0012 18.6 0.2 0.053 13.3 0.0 2.8 2 1 1 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_24 PF13479.6 gi|294494914|ref|YP_003541407.1| - 0.0043 16.8 0.1 0.012 15.4 0.1 1.6 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|294494914|ref|YP_003541407.1| - 0.0079 15.4 0.0 0.018 14.3 0.0 1.5 1 1 0 1 1 1 1 TIP49 P-loop domain AAA_14 PF13173.6 gi|294494914|ref|YP_003541407.1| - 0.02 14.9 0.0 0.12 12.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain Imm21 PF15589.6 gi|294494914|ref|YP_003541407.1| - 0.05 13.6 0.0 0.095 12.8 0.0 1.4 1 0 0 1 1 1 0 Immunity protein 21 AAA_22 PF13401.6 gi|294494914|ref|YP_003541407.1| - 0.14 12.4 0.0 0.39 11.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|294494914|ref|YP_003541407.1| - 0.15 11.9 0.0 0.32 10.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain SMG1 PF15785.5 gi|294494914|ref|YP_003541407.1| - 0.18 10.1 0.0 0.28 9.5 0.0 1.2 1 0 0 1 1 1 0 Serine/threonine-protein kinase smg-1 Radical_SAM_C PF16199.5 gi|294494915|ref|YP_003541408.1| - 9.9e-28 96.0 0.1 2.1e-27 95.0 0.1 1.5 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|294494915|ref|YP_003541408.1| - 2.9e-18 66.8 0.0 1.4e-17 64.6 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|294494915|ref|YP_003541408.1| - 1.4e-05 25.3 0.1 2.8e-05 24.3 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|294494915|ref|YP_003541408.1| - 0.00047 20.1 0.0 0.001 19.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain TrmB PF01978.19 gi|294494916|ref|YP_003541409.1| - 0.00023 21.0 0.1 0.00043 20.1 0.1 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB AAA_31 PF13614.6 gi|294494917|ref|YP_003541410.1| - 1.7e-20 73.7 0.0 3.5e-20 72.7 0.0 1.5 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|294494917|ref|YP_003541410.1| - 2.4e-16 60.0 0.1 2.6e-14 53.3 0.1 2.8 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|294494917|ref|YP_003541410.1| - 2.8e-11 43.5 0.0 8.7e-11 42.0 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|294494917|ref|YP_003541410.1| - 7.5e-09 35.4 0.0 4.6e-08 32.8 0.0 1.9 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ VirC1 PF07015.11 gi|294494917|ref|YP_003541410.1| - 1.3e-07 31.2 0.1 0.0029 16.9 0.0 2.1 2 0 0 2 2 2 2 VirC1 protein SRP54 PF00448.22 gi|294494917|ref|YP_003541410.1| - 3.3e-06 26.9 0.0 0.035 13.7 0.0 2.2 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain MipZ PF09140.11 gi|294494917|ref|YP_003541410.1| - 5.7e-06 25.8 0.0 0.00033 20.0 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|294494917|ref|YP_003541410.1| - 0.0001 21.6 0.1 0.00041 19.6 0.1 1.9 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|294494917|ref|YP_003541410.1| - 0.022 14.2 0.0 0.046 13.1 0.0 1.5 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|294494917|ref|YP_003541410.1| - 0.031 13.8 0.0 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|294494917|ref|YP_003541410.1| - 0.037 14.0 0.0 0.092 12.7 0.0 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit DnaB_C PF03796.15 gi|294494917|ref|YP_003541410.1| - 0.066 12.5 0.0 0.27 10.5 0.0 1.8 1 1 1 2 2 2 0 DnaB-like helicase C terminal domain MeaB PF03308.16 gi|294494917|ref|YP_003541410.1| - 0.13 11.2 0.0 13 4.7 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB YcaO PF02624.16 gi|294494917|ref|YP_003541410.1| - 0.16 11.2 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 YcaO cyclodehydratase, ATP-ad Mg2+-binding Fae PF08714.11 gi|294494919|ref|YP_003541412.1| - 2.3e-72 242.1 1.3 4e-72 241.4 0.3 1.9 2 0 0 2 2 2 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.24 gi|294494919|ref|YP_003541412.1| - 3.4e-24 85.7 1.0 1e-23 84.1 0.8 1.9 2 1 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|294494919|ref|YP_003541412.1| - 3.3e-05 23.4 0.7 0.00027 20.4 0.7 2.3 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.19 gi|294494919|ref|YP_003541412.1| - 0.0057 16.4 0.2 0.029 14.2 0.1 2.1 2 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain TIM PF00121.18 gi|294494920|ref|YP_003541413.1| - 2.7e-11 43.3 0.1 9.5e-11 41.5 0.0 1.7 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|294494920|ref|YP_003541413.1| - 2.2e-05 23.9 1.1 3.5e-05 23.2 0.3 1.7 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|294494920|ref|YP_003541413.1| - 0.0071 15.4 0.6 0.0071 15.4 0.6 1.5 2 0 0 2 2 2 1 FMN-dependent dehydrogenase PDH PF02153.17 gi|294494922|ref|YP_003541415.1| - 5.3e-57 192.8 0.0 6.7e-57 192.4 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|294494922|ref|YP_003541415.1| - 1.4e-07 32.0 0.0 3e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|294494922|ref|YP_003541415.1| - 1.7e-06 28.3 0.0 3.6e-06 27.2 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|294494922|ref|YP_003541415.1| - 3.4e-05 23.3 0.0 6.3e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NmrA PF05368.13 gi|294494922|ref|YP_003541415.1| - 0.022 14.3 0.0 0.038 13.5 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family Epimerase PF01370.21 gi|294494922|ref|YP_003541415.1| - 0.063 12.7 0.0 0.21 11.0 0.0 1.9 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family Shikimate_dh_N PF08501.11 gi|294494923|ref|YP_003541416.1| - 4.4e-26 90.9 0.0 9.3e-26 89.9 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|294494923|ref|YP_003541416.1| - 2.8e-16 59.0 0.4 2.8e-16 59.0 0.4 2.0 2 0 0 2 2 2 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|294494923|ref|YP_003541416.1| - 7.2e-15 55.3 0.1 1e-14 54.8 0.1 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|294494923|ref|YP_003541416.1| - 2e-06 28.3 0.1 4.1e-06 27.3 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|294494923|ref|YP_003541416.1| - 0.00013 21.4 0.1 0.0002 20.8 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|294494923|ref|YP_003541416.1| - 0.0023 18.2 0.1 0.0041 17.4 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|294494923|ref|YP_003541416.1| - 0.0036 17.5 0.0 0.0056 16.9 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|294494923|ref|YP_003541416.1| - 0.012 14.9 0.8 0.019 14.3 0.8 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|294494923|ref|YP_003541416.1| - 0.017 15.1 0.1 0.029 14.2 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short PF00106.25 gi|294494923|ref|YP_003541416.1| - 0.017 14.6 0.6 0.034 13.6 0.6 1.6 1 1 0 1 1 1 0 short chain dehydrogenase GFO_IDH_MocA PF01408.22 gi|294494923|ref|YP_003541416.1| - 0.021 15.6 0.1 0.039 14.8 0.1 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_7 PF13241.6 gi|294494923|ref|YP_003541416.1| - 0.071 13.6 0.1 0.11 12.9 0.1 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.6 gi|294494923|ref|YP_003541416.1| - 0.088 12.0 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DHquinase_I PF01487.15 gi|294494924|ref|YP_003541417.1| - 9.3e-52 176.5 0.0 1.1e-51 176.3 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase DHQS PF01959.16 gi|294494925|ref|YP_003541418.1| - 1.7e-149 497.5 5.2 2e-149 497.3 5.2 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II OapA PF04225.12 gi|294494925|ref|YP_003541418.1| - 0.0068 16.5 0.2 1.2 9.3 0.0 2.5 1 1 1 2 2 2 2 Opacity-associated protein A LysM-like domain Borrelia_P83 PF05262.11 gi|294494925|ref|YP_003541418.1| - 0.01 14.4 0.1 0.02 13.4 0.1 1.4 1 0 0 1 1 1 0 Borrelia P83/100 protein QRPTase_C PF01729.19 gi|294494925|ref|YP_003541418.1| - 0.026 14.3 0.5 0.064 13.0 0.1 1.9 2 1 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain TOBE_2 PF08402.10 gi|294494925|ref|YP_003541418.1| - 0.095 12.9 0.5 3.8 7.8 0.2 3.1 3 1 0 3 3 3 0 TOBE domain PPS_PS PF02006.16 gi|294494925|ref|YP_003541418.1| - 0.16 11.6 2.5 8.4 5.9 0.1 2.7 3 0 0 3 3 3 0 Phosphopantothenate/pantothenate synthetase DeoC PF01791.9 gi|294494926|ref|YP_003541419.1| - 1.6e-64 217.7 0.0 1.9e-64 217.5 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase Dus PF01207.17 gi|294494926|ref|YP_003541419.1| - 0.0091 15.1 0.9 0.24 10.4 0.1 2.7 2 1 1 3 3 3 1 Dihydrouridine synthase (Dus) PA PF02225.22 gi|294494926|ref|YP_003541419.1| - 0.061 13.4 0.1 4.1 7.5 0.0 2.9 2 1 1 3 3 3 0 PA domain GATase PF00117.28 gi|294494927|ref|YP_003541420.1| - 3e-37 128.2 0.0 3.4e-37 128.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|294494927|ref|YP_003541420.1| - 6.7e-14 52.2 0.0 9.3e-13 48.4 0.0 2.4 2 1 0 2 2 2 1 Peptidase C26 AP_endonuc_2 PF01261.24 gi|294494928|ref|YP_003541421.1| - 2.1e-16 60.0 0.0 2.5e-16 59.8 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF4351 PF14261.6 gi|294494929|ref|YP_003541422.1| - 0.083 13.0 0.1 0.91 9.6 0.1 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4351) MarR PF01047.22 gi|294494930|ref|YP_003541423.1| - 2.6e-16 59.3 0.0 5.1e-16 58.3 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|294494930|ref|YP_003541423.1| - 1.4e-15 56.9 0.1 2.4e-15 56.1 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|294494930|ref|YP_003541423.1| - 1.5e-10 41.4 0.1 2.5e-10 40.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|294494930|ref|YP_003541423.1| - 3.2e-07 30.2 0.1 5.7e-06 26.1 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|294494930|ref|YP_003541423.1| - 3.6e-06 27.1 0.0 6.9e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|294494930|ref|YP_003541423.1| - 1.4e-05 25.0 0.1 3.2e-05 23.8 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_34 PF13601.6 gi|294494930|ref|YP_003541423.1| - 1.4e-05 25.1 0.0 2.3e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|294494930|ref|YP_003541423.1| - 3.4e-05 23.5 1.0 6e-05 22.8 0.3 1.8 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|294494930|ref|YP_003541423.1| - 0.00026 20.5 0.0 0.00053 19.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|294494930|ref|YP_003541423.1| - 0.00032 20.3 0.1 0.00061 19.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HxlR PF01638.17 gi|294494930|ref|YP_003541423.1| - 0.00032 20.5 0.1 0.0005 19.9 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_23 PF13384.6 gi|294494930|ref|YP_003541423.1| - 0.0004 20.1 0.2 0.0076 16.0 0.1 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_11 PF08279.12 gi|294494930|ref|YP_003541423.1| - 0.00056 19.8 0.0 0.0015 18.4 0.0 1.7 1 0 0 1 1 1 1 HTH domain Replic_Relax PF13814.6 gi|294494930|ref|YP_003541423.1| - 0.00088 19.4 0.1 0.0012 19.0 0.1 1.2 1 0 0 1 1 1 1 Replication-relaxation HTH_20 PF12840.7 gi|294494930|ref|YP_003541423.1| - 0.0047 17.0 0.1 0.01 15.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain PAX PF00292.18 gi|294494930|ref|YP_003541423.1| - 0.0049 16.8 0.0 0.061 13.3 0.0 2.0 1 1 1 2 2 2 1 'Paired box' domain HTH_29 PF13551.6 gi|294494930|ref|YP_003541423.1| - 0.011 15.7 0.1 0.026 14.6 0.1 1.7 1 1 0 1 1 1 0 Winged helix-turn helix HTH_5 PF01022.20 gi|294494930|ref|YP_003541423.1| - 0.013 15.3 0.0 0.029 14.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF4423 PF14394.6 gi|294494930|ref|YP_003541423.1| - 0.017 14.8 0.0 0.03 14.1 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_28 PF13518.6 gi|294494930|ref|YP_003541423.1| - 0.051 13.7 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 gi|294494930|ref|YP_003541423.1| - 0.055 13.4 0.1 0.095 12.7 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_36 PF13730.6 gi|294494930|ref|YP_003541423.1| - 0.076 13.0 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|294494930|ref|YP_003541423.1| - 0.11 12.8 0.1 0.17 12.2 0.1 1.4 1 0 0 1 1 1 0 Penicillinase repressor Rrf2 PF02082.20 gi|294494930|ref|YP_003541423.1| - 0.13 12.6 0.0 0.29 11.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF4872 PF16169.5 gi|294494930|ref|YP_003541423.1| - 0.2 11.4 1.2 0.68 9.7 1.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4872) MatE PF01554.18 gi|294494931|ref|YP_003541424.1| - 1.1e-56 190.9 36.6 4.6e-30 104.4 10.9 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|294494931|ref|YP_003541424.1| - 2.2e-13 50.5 21.9 5.4e-10 39.5 11.1 4.7 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain E1-E2_ATPase PF00122.20 gi|294494931|ref|YP_003541424.1| - 2.2 7.7 7.2 11 5.5 0.7 2.9 2 0 0 2 2 2 0 E1-E2 ATPase Rad51 PF08423.11 gi|294494932|ref|YP_003541425.1| - 9.4e-87 290.5 0.0 1.1e-86 290.2 0.0 1.0 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|294494932|ref|YP_003541425.1| - 3.7e-11 43.5 0.1 8e-11 42.4 0.1 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain RecA PF00154.21 gi|294494932|ref|YP_003541425.1| - 7.9e-11 41.9 0.7 1.3e-08 34.7 0.1 2.4 2 1 0 2 2 2 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|294494932|ref|YP_003541425.1| - 1.4e-08 34.3 0.1 2.1e-08 33.8 0.1 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|294494932|ref|YP_003541425.1| - 4.7e-08 32.8 0.0 6.7e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain HHH_2 PF12826.7 gi|294494932|ref|YP_003541425.1| - 2e-06 27.8 0.2 5.3e-06 26.4 0.2 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|294494932|ref|YP_003541425.1| - 0.0022 17.7 0.7 0.14 12.0 0.4 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|294494932|ref|YP_003541425.1| - 0.0031 17.3 0.1 0.018 14.9 0.0 2.3 2 1 0 2 2 2 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|294494932|ref|YP_003541425.1| - 0.0036 17.5 0.0 0.0076 16.5 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus RNA_pol_RpbG PF16992.5 gi|294494932|ref|YP_003541425.1| - 0.0039 17.2 0.0 0.0069 16.4 0.0 1.3 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G AAA PF00004.29 gi|294494932|ref|YP_003541425.1| - 0.013 15.9 0.1 0.064 13.7 0.1 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) CobU PF02283.16 gi|294494932|ref|YP_003541425.1| - 0.014 15.0 0.2 0.15 11.6 0.2 2.2 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_24 PF13479.6 gi|294494932|ref|YP_003541425.1| - 0.015 15.0 0.0 0.041 13.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|294494932|ref|YP_003541425.1| - 0.097 12.1 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein Zeta_toxin PF06414.12 gi|294494932|ref|YP_003541425.1| - 0.11 11.8 0.6 9.2 5.5 0.0 3.0 2 1 0 3 3 3 0 Zeta toxin AAA_22 PF13401.6 gi|294494932|ref|YP_003541425.1| - 0.14 12.4 0.1 0.31 11.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain Hydrolase_3 PF08282.12 gi|294494933|ref|YP_003541426.1| - 5.4e-30 105.0 1.8 4.8e-21 75.6 0.4 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|294494933|ref|YP_003541426.1| - 4.2e-07 29.7 0.0 3e-06 27.0 0.0 1.9 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|294494933|ref|YP_003541426.1| - 8.5e-07 29.5 1.5 0.044 14.1 0.1 3.1 1 1 2 3 3 3 3 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|294494933|ref|YP_003541426.1| - 0.00017 22.1 1.2 0.59 10.5 0.1 3.1 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|294494933|ref|YP_003541426.1| - 0.0075 15.4 0.0 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 Trehalose-phosphatase PRC PF05239.16 gi|294494934|ref|YP_003541427.1| - 3.8e-11 42.9 0.8 4.9e-11 42.6 0.8 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF2171 PF09939.9 gi|294494934|ref|YP_003541427.1| - 0.057 13.7 0.1 0.22 11.9 0.1 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) AAA PF00004.29 gi|294494935|ref|YP_003541428.1| - 1.8e-100 332.5 0.0 5.1e-49 166.1 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|294494935|ref|YP_003541428.1| - 8.6e-30 102.3 0.5 1.3e-15 56.9 0.2 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|294494935|ref|YP_003541428.1| - 1.2e-27 95.9 0.0 3.5e-27 94.4 0.0 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.17 gi|294494935|ref|YP_003541428.1| - 3.7e-15 55.5 0.2 9.6e-14 50.9 0.2 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.14 gi|294494935|ref|YP_003541428.1| - 2e-14 54.0 0.0 5e-06 26.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|294494935|ref|YP_003541428.1| - 4.2e-14 53.3 0.1 8.5e-06 26.3 0.0 3.6 3 1 1 4 4 3 2 AAA ATPase domain RuvB_N PF05496.12 gi|294494935|ref|YP_003541428.1| - 4.5e-14 52.5 0.0 1.4e-05 24.9 0.0 2.8 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|294494935|ref|YP_003541428.1| - 1.3e-12 47.9 1.5 6.8e-05 22.9 0.2 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|294494935|ref|YP_003541428.1| - 8.8e-11 42.2 0.4 0.0027 18.0 0.0 4.0 2 2 2 4 4 4 2 AAA domain AAA_18 PF13238.6 gi|294494935|ref|YP_003541428.1| - 6.6e-09 36.4 0.0 0.0052 17.3 0.0 3.1 3 0 0 3 3 3 2 AAA domain TIP49 PF06068.13 gi|294494935|ref|YP_003541428.1| - 9.8e-09 34.9 0.0 0.0006 19.1 0.0 2.8 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|294494935|ref|YP_003541428.1| - 1.3e-08 35.1 0.0 0.0069 16.6 0.0 2.7 2 1 0 3 3 2 2 AAA domain AAA_14 PF13173.6 gi|294494935|ref|YP_003541428.1| - 3.8e-08 33.4 0.0 0.014 15.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|294494935|ref|YP_003541428.1| - 4.4e-08 33.1 0.0 0.0039 16.9 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|294494935|ref|YP_003541428.1| - 3.6e-07 30.5 0.0 0.0047 17.3 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.6 gi|294494935|ref|YP_003541428.1| - 1.1e-06 28.5 0.0 0.027 14.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|294494935|ref|YP_003541428.1| - 1.2e-06 28.4 0.1 0.075 12.7 0.0 3.8 2 2 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|294494935|ref|YP_003541428.1| - 1.3e-06 27.9 0.2 0.04 13.3 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Vps4_C PF09336.10 gi|294494935|ref|YP_003541428.1| - 3.9e-06 26.8 0.6 0.016 15.2 0.0 2.7 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_28 PF13521.6 gi|294494935|ref|YP_003541428.1| - 4e-06 27.2 0.0 0.071 13.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|294494935|ref|YP_003541428.1| - 5.3e-06 26.1 0.0 0.13 11.7 0.0 2.6 2 0 0 2 2 2 2 P-loop containing dynein motor region ATPase PF06745.13 gi|294494935|ref|YP_003541428.1| - 2.2e-05 23.9 0.7 0.041 13.2 0.0 3.3 2 1 1 3 3 3 1 KaiC TsaE PF02367.17 gi|294494935|ref|YP_003541428.1| - 3.1e-05 24.0 0.0 0.09 12.8 0.0 2.6 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|294494935|ref|YP_003541428.1| - 3.6e-05 23.3 0.0 0.34 10.3 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein AAA_25 PF13481.6 gi|294494935|ref|YP_003541428.1| - 4.1e-05 23.3 0.5 0.6 9.7 0.0 3.3 3 0 0 3 3 3 2 AAA domain AAA_3 PF07726.11 gi|294494935|ref|YP_003541428.1| - 4.7e-05 23.3 0.0 0.16 11.8 0.0 2.8 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.17 gi|294494935|ref|YP_003541428.1| - 4.8e-05 22.6 0.1 0.22 10.6 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Bac_DnaA PF00308.18 gi|294494935|ref|YP_003541428.1| - 5.1e-05 23.2 0.0 0.27 11.0 0.0 2.7 2 1 0 2 2 2 2 Bacterial dnaA protein Zeta_toxin PF06414.12 gi|294494935|ref|YP_003541428.1| - 0.00011 21.5 0.0 0.25 10.6 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin NACHT PF05729.12 gi|294494935|ref|YP_003541428.1| - 0.00012 22.1 0.1 0.47 10.4 0.0 3.2 3 0 0 3 3 3 1 NACHT domain DUF2075 PF09848.9 gi|294494935|ref|YP_003541428.1| - 0.00012 21.4 0.0 0.2 10.9 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ATPase_2 PF01637.18 gi|294494935|ref|YP_003541428.1| - 0.00016 21.7 0.2 1.5 8.7 0.0 3.5 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea ABC_tran PF00005.27 gi|294494935|ref|YP_003541428.1| - 0.00018 22.0 0.0 0.88 10.1 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_11 PF13086.6 gi|294494935|ref|YP_003541428.1| - 0.00027 20.8 0.0 0.6 9.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|294494935|ref|YP_003541428.1| - 0.00072 18.8 0.0 1.1 8.4 0.0 2.7 3 0 0 3 3 2 2 NB-ARC domain AAA_30 PF13604.6 gi|294494935|ref|YP_003541428.1| - 0.00076 19.2 0.0 1.4 8.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.6 gi|294494935|ref|YP_003541428.1| - 0.00077 19.9 0.0 0.63 10.5 0.0 3.1 3 0 0 3 3 2 1 AAA domain DUF815 PF05673.13 gi|294494935|ref|YP_003541428.1| - 0.0012 18.1 0.0 1 8.5 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Sigma54_activ_2 PF14532.6 gi|294494935|ref|YP_003541428.1| - 0.0017 18.5 0.0 0.74 9.9 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_19 PF13245.6 gi|294494935|ref|YP_003541428.1| - 0.0017 18.7 1.2 3.3 8.1 0.1 3.1 3 1 0 3 3 2 1 AAA domain Cytidylate_kin PF02224.18 gi|294494935|ref|YP_003541428.1| - 0.0046 16.7 0.1 3.1 7.5 0.0 2.8 2 0 0 2 2 2 1 Cytidylate kinase T2SSE PF00437.20 gi|294494935|ref|YP_003541428.1| - 0.0051 15.9 0.0 2.3 7.2 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|294494935|ref|YP_003541428.1| - 0.0071 16.3 3.1 1.7 8.5 0.0 4.0 3 1 0 3 3 3 1 NTPase ATP-synt_ab PF00006.25 gi|294494935|ref|YP_003541428.1| - 0.019 14.6 0.0 2.3 7.8 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain KAP_NTPase PF07693.14 gi|294494935|ref|YP_003541428.1| - 0.034 13.4 0.1 6.4 5.9 0.0 2.6 2 1 0 3 3 3 0 KAP family P-loop domain DAP3 PF10236.9 gi|294494935|ref|YP_003541428.1| - 0.043 13.0 0.0 5 6.2 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Guanylate_kin PF00625.21 gi|294494935|ref|YP_003541428.1| - 0.046 13.4 0.2 27 4.4 0.0 4.0 2 2 2 4 4 4 0 Guanylate kinase IPT PF01745.16 gi|294494935|ref|YP_003541428.1| - 0.047 13.1 0.1 2.6 7.4 0.0 2.7 2 0 0 2 2 2 0 Isopentenyl transferase LID PF17916.1 gi|294494935|ref|YP_003541428.1| - 0.06 13.0 0.1 0.2 11.4 0.1 1.9 1 0 0 1 1 1 0 LIM interaction domain (LID) SKI PF01202.22 gi|294494935|ref|YP_003541428.1| - 0.097 12.8 0.0 18 5.4 0.0 2.4 2 0 0 2 2 2 0 Shikimate kinase CPT PF07931.12 gi|294494935|ref|YP_003541428.1| - 0.1 12.4 0.0 13 5.6 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein DUF2373 PF10180.9 gi|294494935|ref|YP_003541428.1| - 0.13 12.1 0.0 0.72 9.7 0.0 2.3 2 0 0 2 2 1 0 Uncharacterised conserved protein (DUF2373) AFG1_ATPase PF03969.16 gi|294494935|ref|YP_003541428.1| - 0.14 11.0 0.0 17 4.2 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase Hydin_ADK PF17213.3 gi|294494935|ref|YP_003541428.1| - 0.35 11.1 1.4 28 4.9 0.1 2.5 3 0 0 3 3 2 0 Hydin Adenylate kinase-like domain TRAM PF01938.20 gi|294494936|ref|YP_003541429.1| - 1.4e-15 57.0 1.3 1.6e-15 56.9 1.3 1.0 1 0 0 1 1 1 1 TRAM domain PAP2_3 PF14378.6 gi|294494938|ref|YP_003541431.1| - 5.2e-15 55.6 20.7 5.2e-15 55.6 20.7 3.0 1 1 1 2 2 2 1 PAP2 superfamily PAP2 PF01569.21 gi|294494938|ref|YP_003541431.1| - 6.5e-14 51.9 4.1 6.5e-14 51.9 4.1 2.8 2 2 1 3 3 3 1 PAP2 superfamily MgtC PF02308.16 gi|294494938|ref|YP_003541431.1| - 2.8 8.3 10.1 0.085 13.2 1.5 2.6 1 1 1 2 2 2 0 MgtC family LPG_synthase_TM PF03706.13 gi|294494939|ref|YP_003541432.1| - 1.3e-45 156.3 24.7 1.6e-45 155.9 24.7 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glyco_trans_1_3 PF13528.6 gi|294494940|ref|YP_003541433.1| - 5.9e-18 65.2 0.0 4.5e-09 36.0 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.16 gi|294494940|ref|YP_003541433.1| - 5.4e-14 52.5 0.0 8.4e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain UDPGT PF00201.18 gi|294494940|ref|YP_003541433.1| - 1.3e-06 27.6 0.0 3.2e-06 26.2 0.0 1.6 2 0 0 2 2 2 1 UDP-glucoronosyl and UDP-glucosyl transferase Glyco_trans_4_2 PF13477.6 gi|294494940|ref|YP_003541433.1| - 3.3e-06 27.2 0.0 5.7e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|294494940|ref|YP_003541433.1| - 7.1e-05 22.9 0.0 0.00017 21.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|294494940|ref|YP_003541433.1| - 0.0016 18.9 0.0 0.0033 17.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|294494940|ref|YP_003541433.1| - 0.0021 18.5 0.0 0.0046 17.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 YjeF_N PF03853.15 gi|294494940|ref|YP_003541433.1| - 0.012 15.5 0.1 0.026 14.4 0.1 1.5 1 0 0 1 1 1 0 YjeF-related protein N-terminus Glyco_transf_28 PF03033.20 gi|294494940|ref|YP_003541433.1| - 0.022 14.8 0.0 0.045 13.8 0.0 1.6 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain NikR_C PF08753.11 gi|294494941|ref|YP_003541434.1| - 2.9e-08 33.7 0.0 3.1e-08 33.6 0.0 1.0 1 0 0 1 1 1 1 NikR C terminal nickel binding domain NikR_C PF08753.11 gi|294494942|ref|YP_003541435.1| - 3.3e-10 40.0 0.2 6.1e-10 39.1 0.2 1.4 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|294494942|ref|YP_003541435.1| - 3.2e-09 36.4 0.0 5.1e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|294494942|ref|YP_003541435.1| - 0.0022 18.1 0.0 0.0033 17.5 0.0 1.3 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_8 PF17723.1 gi|294494942|ref|YP_003541435.1| - 0.01 16.0 0.0 0.014 15.5 0.0 1.5 1 1 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family SAICAR_synt PF01259.18 gi|294494943|ref|YP_003541436.1| - 2.9e-60 204.0 0.1 3.5e-60 203.8 0.1 1.1 1 0 0 1 1 1 1 SAICAR synthetase Nre_N PF04894.12 gi|294494944|ref|YP_003541437.1| - 1.3e-103 346.5 0.0 1.7e-103 346.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|294494944|ref|YP_003541437.1| - 1.8e-40 137.3 0.0 2.9e-40 136.6 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal HTH_3 PF01381.22 gi|294494945|ref|YP_003541438.1| - 2.3e-05 24.3 0.1 3.8e-05 23.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.6 gi|294494945|ref|YP_003541438.1| - 0.0004 19.9 0.1 0.00076 19.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_31 PF13560.6 gi|294494945|ref|YP_003541438.1| - 0.00093 19.5 0.0 0.0014 18.9 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|294494945|ref|YP_003541438.1| - 0.0011 19.4 0.0 0.0018 18.7 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.16 gi|294494945|ref|YP_003541438.1| - 0.0014 18.1 0.0 0.003 17.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 KORA PF16509.5 gi|294494945|ref|YP_003541438.1| - 0.0017 18.6 0.1 0.0042 17.3 0.1 1.7 1 1 1 2 2 2 1 TrfB plasmid transcriptional repressor HTH_17 PF12728.7 gi|294494945|ref|YP_003541438.1| - 0.0045 17.1 0.0 0.0095 16.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|294494945|ref|YP_003541438.1| - 0.0054 16.7 0.0 0.0085 16.0 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|294494945|ref|YP_003541438.1| - 0.0087 15.9 0.1 0.017 15.0 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_37 PF13744.6 gi|294494945|ref|YP_003541438.1| - 0.017 15.1 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Ribosomal_L36 PF00444.18 gi|294494945|ref|YP_003541438.1| - 0.024 14.8 0.8 0.024 14.8 0.8 1.7 2 0 0 2 2 2 0 Ribosomal protein L36 P22_Cro PF14549.6 gi|294494945|ref|YP_003541438.1| - 0.03 14.1 0.0 0.051 13.4 0.0 1.3 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro YdaS_antitoxin PF15943.5 gi|294494945|ref|YP_003541438.1| - 0.031 14.1 0.0 0.083 12.8 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_8 PF02954.19 gi|294494945|ref|YP_003541438.1| - 0.045 13.6 0.2 0.078 12.8 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family UPF0175 PF03683.13 gi|294494945|ref|YP_003541438.1| - 0.095 12.4 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) HTH_5 PF01022.20 gi|294494945|ref|YP_003541438.1| - 0.12 12.3 0.5 0.7 9.8 0.1 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Cro PF09048.10 gi|294494945|ref|YP_003541438.1| - 0.12 12.4 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Cro HTH_28 PF13518.6 gi|294494945|ref|YP_003541438.1| - 0.15 12.2 0.1 0.29 11.3 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain SUI1 PF01253.22 gi|294494946|ref|YP_003541439.1| - 7.6e-20 71.2 0.1 1e-19 70.9 0.1 1.2 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.15 gi|294494946|ref|YP_003541439.1| - 0.018 14.7 1.0 0.023 14.4 1.0 1.2 1 0 0 1 1 1 0 DTW domain DUF192 PF02643.15 gi|294494947|ref|YP_003541440.1| - 1.6e-23 82.6 0.0 1.9e-23 82.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 AIRS PF00586.24 gi|294494948|ref|YP_003541441.1| - 6.7e-46 154.9 0.3 4.9e-22 78.4 0.0 3.4 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|294494948|ref|YP_003541441.1| - 1.4e-43 148.8 5.4 1.7e-29 102.9 0.4 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|294494948|ref|YP_003541441.1| - 1.4e-08 35.1 0.0 2.8e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain Aminotran_5 PF00266.19 gi|294494949|ref|YP_003541442.1| - 5.3e-122 407.3 0.0 6e-122 407.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|294494949|ref|YP_003541442.1| - 4.7e-06 25.4 0.0 6.5e-06 24.9 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|294494949|ref|YP_003541442.1| - 7.6e-06 25.5 0.0 1.2e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|294494949|ref|YP_003541442.1| - 0.00048 19.5 0.0 0.00061 19.2 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase YcaO PF02624.16 gi|294494951|ref|YP_003541444.1| - 2.2e-86 290.1 0.2 2.7e-86 289.8 0.2 1.1 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding TfuA PF07812.12 gi|294494952|ref|YP_003541445.1| - 1.8e-45 153.6 0.1 5.2e-45 152.0 0.1 1.8 2 0 0 2 2 2 1 TfuA-like protein Fe_dep_repr_C PF02742.15 gi|294494953|ref|YP_003541446.1| - 1.2e-16 60.5 0.0 2.3e-16 59.6 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|294494953|ref|YP_003541446.1| - 1.4e-12 47.6 0.2 2e-12 47.1 0.2 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|294494953|ref|YP_003541446.1| - 1.8e-06 27.7 0.0 3.7e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|294494953|ref|YP_003541446.1| - 2.1e-05 24.4 0.0 3.1e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|294494953|ref|YP_003541446.1| - 7.3e-05 22.2 0.0 0.011 15.3 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding RuvB_C PF05491.13 gi|294494953|ref|YP_003541446.1| - 0.00018 21.3 0.0 0.0023 17.7 0.1 2.2 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain HTH_27 PF13463.6 gi|294494953|ref|YP_003541446.1| - 0.0014 19.1 0.0 0.002 18.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|294494953|ref|YP_003541446.1| - 0.0014 18.9 0.0 0.002 18.5 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|294494953|ref|YP_003541446.1| - 0.0028 17.6 0.0 0.0057 16.6 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|294494953|ref|YP_003541446.1| - 0.0043 16.8 0.0 0.0071 16.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Topoisom_bac PF01131.20 gi|294494953|ref|YP_003541446.1| - 0.0063 15.6 0.0 0.0084 15.2 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Rio2_N PF09202.11 gi|294494953|ref|YP_003541446.1| - 0.0065 16.7 0.1 0.017 15.3 0.1 1.7 2 0 0 2 2 2 1 Rio2, N-terminal HTH_DeoR PF08220.12 gi|294494953|ref|YP_003541446.1| - 0.0074 16.0 0.1 0.016 14.9 0.0 1.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain TrmB PF01978.19 gi|294494953|ref|YP_003541446.1| - 0.014 15.3 0.1 0.04 13.8 0.1 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|294494953|ref|YP_003541446.1| - 0.015 14.9 0.0 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF2100 PF09873.9 gi|294494953|ref|YP_003541446.1| - 0.022 14.6 0.0 0.027 14.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2100) HTH_micro PF17007.5 gi|294494953|ref|YP_003541446.1| - 0.022 13.6 0.1 0.027 13.3 0.1 1.1 1 0 0 1 1 1 0 HTH-like HTH_5 PF01022.20 gi|294494953|ref|YP_003541446.1| - 0.03 14.2 0.1 0.11 12.4 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|294494953|ref|YP_003541446.1| - 0.035 14.1 0.3 0.064 13.2 0.0 1.6 2 0 0 2 2 1 0 HTH domain HTH_23 PF13384.6 gi|294494953|ref|YP_003541446.1| - 0.038 13.8 0.0 4.7 7.1 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain DDRGK PF09756.9 gi|294494953|ref|YP_003541446.1| - 0.04 13.5 0.0 0.059 13.0 0.0 1.2 1 0 0 1 1 1 0 DDRGK domain YjcQ PF09639.10 gi|294494953|ref|YP_003541446.1| - 0.044 14.0 0.0 0.08 13.2 0.0 1.4 1 1 0 1 1 1 0 YjcQ protein DUF2551 PF10826.8 gi|294494953|ref|YP_003541446.1| - 0.047 13.9 0.0 0.9 9.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2551) DUF1992 PF09350.10 gi|294494953|ref|YP_003541446.1| - 0.06 13.5 0.0 0.16 12.1 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1992) FeoC PF09012.10 gi|294494953|ref|YP_003541446.1| - 0.077 13.1 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_12 PF08461.10 gi|294494953|ref|YP_003541446.1| - 0.086 12.8 0.1 0.35 10.9 0.1 2.0 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain DUF4010 PF13194.6 gi|294494954|ref|YP_003541447.1| - 2e-48 164.8 19.4 2e-48 164.8 19.4 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|294494954|ref|YP_003541447.1| - 5.4e-20 72.0 12.1 5.4e-20 72.0 12.1 3.3 3 2 0 3 3 3 1 MgtC family Rubrerythrin PF02915.17 gi|294494955|ref|YP_003541448.1| - 8.5e-08 32.7 2.1 1e-07 32.5 2.1 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|294494955|ref|YP_003541448.1| - 8e-06 26.2 0.2 1.1e-05 25.8 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) COQ7 PF03232.13 gi|294494955|ref|YP_003541448.1| - 0.0022 17.8 0.1 0.0028 17.5 0.1 1.1 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Ferritin_2 PF13668.6 gi|294494955|ref|YP_003541448.1| - 0.0075 16.5 0.3 0.0094 16.1 0.3 1.1 1 0 0 1 1 1 1 Ferritin-like domain Coat_F PF07875.12 gi|294494955|ref|YP_003541448.1| - 0.058 13.6 0.2 0.095 12.9 0.2 1.4 1 1 0 1 1 1 0 Coat F domain Lactamase_B PF00753.27 gi|294494956|ref|YP_003541449.1| - 6.3e-15 55.7 0.0 9.5e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|294494956|ref|YP_003541449.1| - 2.5e-09 37.0 0.0 3.1e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|294494956|ref|YP_003541449.1| - 1.3e-05 24.8 0.0 1.7e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|294494956|ref|YP_003541449.1| - 0.026 14.4 0.0 0.035 14.0 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain DUF1847 PF08901.11 gi|294494957|ref|YP_003541450.1| - 2.6e-51 173.4 3.6 2.9e-51 173.2 3.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1847) G10 PF01125.17 gi|294494957|ref|YP_003541450.1| - 0.031 14.0 0.2 0.061 13.1 0.2 1.4 1 0 0 1 1 1 0 G10 protein CbiA PF01656.23 gi|294494958|ref|YP_003541451.1| - 7.3e-17 61.6 0.0 9e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|294494958|ref|YP_003541451.1| - 1.1e-15 57.8 0.4 3.1e-09 36.6 0.2 2.6 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|294494958|ref|YP_003541451.1| - 8.5e-14 50.7 16.6 7.9e-08 31.8 2.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|294494958|ref|YP_003541451.1| - 3e-09 36.6 14.3 5e-05 23.2 2.0 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_31 PF13614.6 gi|294494958|ref|YP_003541451.1| - 3.9e-08 33.4 0.3 0.00088 19.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_2 PF12797.7 gi|294494958|ref|YP_003541451.1| - 4.6e-08 32.7 11.9 0.00024 21.0 2.2 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294494958|ref|YP_003541451.1| - 2.4e-07 31.2 32.3 2.4e-05 24.8 11.5 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294494958|ref|YP_003541451.1| - 4.2e-07 30.0 9.6 0.0023 18.0 0.6 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294494958|ref|YP_003541451.1| - 1.4e-06 29.1 8.9 0.0042 18.0 1.2 2.9 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_NifH PF00142.18 gi|294494958|ref|YP_003541451.1| - 2.7e-05 23.8 1.3 0.017 14.6 0.1 2.4 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family RsgA_GTPase PF03193.16 gi|294494958|ref|YP_003541451.1| - 2.8e-05 24.1 0.4 0.053 13.4 0.1 2.4 2 1 0 2 2 2 2 RsgA GTPase Fer4_10 PF13237.6 gi|294494958|ref|YP_003541451.1| - 3.4e-05 23.9 12.2 0.00049 20.1 11.0 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|294494958|ref|YP_003541451.1| - 0.00014 21.9 12.1 0.00067 19.7 12.1 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294494958|ref|YP_003541451.1| - 0.00035 20.8 14.8 0.12 13.0 2.5 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain GTP_EFTU PF00009.27 gi|294494958|ref|YP_003541451.1| - 0.00053 19.6 1.1 0.0059 16.2 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|294494958|ref|YP_003541451.1| - 0.0008 19.8 0.0 0.0072 16.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain PhoH PF02562.16 gi|294494958|ref|YP_003541451.1| - 0.0025 17.3 1.2 0.5 9.8 0.5 2.2 2 0 0 2 2 2 1 PhoH-like protein AAA_24 PF13479.6 gi|294494958|ref|YP_003541451.1| - 0.0048 16.7 0.1 0.054 13.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|294494958|ref|YP_003541451.1| - 0.006 16.3 1.0 0.14 11.8 0.1 2.6 2 1 1 3 3 3 1 AAA domain NB-ARC PF00931.22 gi|294494958|ref|YP_003541451.1| - 0.0065 15.7 0.2 1.4 8.0 0.2 2.3 2 0 0 2 2 2 1 NB-ARC domain AAA_22 PF13401.6 gi|294494958|ref|YP_003541451.1| - 0.008 16.5 0.1 0.21 11.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain GFO_IDH_MocA PF01408.22 gi|294494958|ref|YP_003541451.1| - 0.0082 17.0 0.1 0.21 12.4 0.0 2.2 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold IstB_IS21 PF01695.17 gi|294494958|ref|YP_003541451.1| - 0.0088 15.8 0.1 2.8 7.6 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein FTHFS PF01268.19 gi|294494958|ref|YP_003541451.1| - 0.019 13.2 0.0 0.026 12.7 0.0 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase Fer4_17 PF13534.6 gi|294494958|ref|YP_003541451.1| - 0.026 15.1 12.0 0.62 10.7 1.4 2.5 1 1 2 3 3 2 0 4Fe-4S dicluster domain ArsA_ATPase PF02374.15 gi|294494958|ref|YP_003541451.1| - 0.03 13.5 3.7 0.042 13.0 0.8 2.3 2 1 0 3 3 3 0 Anion-transporting ATPase DUF2075 PF09848.9 gi|294494958|ref|YP_003541451.1| - 0.034 13.4 0.7 1.5 8.0 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Fer4_3 PF12798.7 gi|294494958|ref|YP_003541451.1| - 0.045 14.7 17.9 1.5 9.9 5.7 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain ABC_tran PF00005.27 gi|294494958|ref|YP_003541451.1| - 0.049 14.2 0.4 0.57 10.7 0.0 2.2 2 1 0 2 2 2 0 ABC transporter ATP_bind_1 PF03029.17 gi|294494958|ref|YP_003541451.1| - 0.057 13.2 0.1 3.1 7.5 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.6 gi|294494958|ref|YP_003541451.1| - 0.06 12.9 3.7 0.11 12.1 0.6 2.3 2 1 1 3 3 3 0 AAA domain AAA_26 PF13500.6 gi|294494958|ref|YP_003541451.1| - 0.068 13.0 2.1 0.086 12.7 0.1 2.1 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|294494958|ref|YP_003541451.1| - 0.07 13.0 0.0 0.28 11.1 0.0 1.9 2 0 0 2 2 2 0 NACHT domain RuvB_N PF05496.12 gi|294494958|ref|YP_003541451.1| - 0.071 12.8 0.2 2 8.1 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain TsaE PF02367.17 gi|294494958|ref|YP_003541451.1| - 0.092 12.8 0.4 4.2 7.4 0.1 2.6 3 0 0 3 3 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|294494958|ref|YP_003541451.1| - 0.12 11.7 0.9 0.43 9.9 0.3 2.0 2 0 0 2 2 2 0 KaiC AAA_18 PF13238.6 gi|294494958|ref|YP_003541451.1| - 0.15 12.6 0.2 3.8 8.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain CBP_BcsQ PF06564.12 gi|294494958|ref|YP_003541451.1| - 0.22 11.0 0.0 18 4.7 0.0 2.1 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ AAA PF00004.29 gi|294494958|ref|YP_003541451.1| - 0.24 11.8 1.0 4.3 7.8 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|294494958|ref|YP_003541451.1| - 0.25 11.6 1.4 0.45 10.8 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|294494958|ref|YP_003541451.1| - 0.33 10.7 1.3 1.3 8.9 0.5 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain Fer4_8 PF13183.6 gi|294494958|ref|YP_003541451.1| - 0.48 10.9 13.3 2.8 8.4 2.2 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|294494958|ref|YP_003541451.1| - 0.98 10.2 12.5 1.7 9.4 2.2 2.9 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|294494958|ref|YP_003541451.1| - 1.3 9.9 14.1 4.5 8.2 2.2 2.8 2 1 1 3 3 2 0 4Fe-4S dicluster domain cobW PF02492.19 gi|294494958|ref|YP_003541451.1| - 6.7 6.3 7.1 6.4 6.3 2.8 2.4 2 2 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|294494959|ref|YP_003541452.1| - 9.4e-18 64.5 0.0 1.2e-17 64.2 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|294494959|ref|YP_003541452.1| - 4.3e-16 59.1 0.2 4e-07 29.7 0.1 3.1 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|294494959|ref|YP_003541452.1| - 6.5e-12 44.8 15.0 3.3e-07 29.8 1.4 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|294494959|ref|YP_003541452.1| - 1.4e-10 40.8 16.2 9.7e-06 25.5 3.2 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|294494959|ref|YP_003541452.1| - 1.1e-08 35.0 8.4 2.7e-08 33.8 8.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294494959|ref|YP_003541452.1| - 7e-08 33.3 5.1 0.0004 21.3 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|294494959|ref|YP_003541452.1| - 8.4e-07 29.5 10.3 4.5e-06 27.2 10.5 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294494959|ref|YP_003541452.1| - 4.9e-06 26.6 11.8 0.00098 19.2 12.0 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294494959|ref|YP_003541452.1| - 2.2e-05 24.3 16.6 0.00035 20.5 3.0 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|294494959|ref|YP_003541452.1| - 7.1e-05 22.9 14.4 0.0004 20.5 11.6 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|294494959|ref|YP_003541452.1| - 0.00038 20.4 3.1 0.1 12.5 1.5 2.4 2 1 0 2 2 2 2 AAA domain AAA_26 PF13500.6 gi|294494959|ref|YP_003541452.1| - 0.00091 19.1 0.0 0.00091 19.1 0.0 1.5 2 0 0 2 2 1 1 AAA domain Fer4_NifH PF00142.18 gi|294494959|ref|YP_003541452.1| - 0.0034 16.9 0.3 0.25 10.7 0.0 2.4 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_22 PF17179.4 gi|294494959|ref|YP_003541452.1| - 0.0067 17.2 3.3 3 8.7 0.8 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294494959|ref|YP_003541452.1| - 0.0099 16.3 15.6 0.088 13.4 4.2 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294494959|ref|YP_003541452.1| - 0.012 16.2 12.2 18 6.0 12.3 2.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain MipZ PF09140.11 gi|294494959|ref|YP_003541452.1| - 0.035 13.4 0.0 0.07 12.4 0.0 1.5 2 0 0 2 2 2 0 ATPase MipZ AAA_25 PF13481.6 gi|294494959|ref|YP_003541452.1| - 0.06 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|294494959|ref|YP_003541452.1| - 0.065 13.0 0.1 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|294494959|ref|YP_003541452.1| - 0.12 11.6 0.0 0.16 11.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Fer4_3 PF12798.7 gi|294494959|ref|YP_003541452.1| - 0.21 12.6 21.8 0.33 12.0 6.5 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|294494959|ref|YP_003541452.1| - 0.22 12.3 6.7 5.3 7.9 1.8 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|294494959|ref|YP_003541452.1| - 0.59 10.6 12.8 1e+03 0.3 13.3 2.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain ArsA_ATPase PF02374.15 gi|294494959|ref|YP_003541452.1| - 2.7 7.1 6.1 0.31 10.2 1.2 1.9 2 0 0 2 2 2 0 Anion-transporting ATPase FrhB_FdhB_C PF04432.13 gi|294494960|ref|YP_003541453.1| - 2.4e-39 134.7 0.1 6.4e-39 133.3 0.1 1.7 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus NIR_SIR PF01077.22 gi|294494960|ref|YP_003541453.1| - 1.1e-23 83.5 0.1 1.9e-23 82.7 0.1 1.4 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain FrhB_FdhB_N PF04422.13 gi|294494960|ref|YP_003541453.1| - 5.1e-19 68.2 0.1 9.9e-19 67.3 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.27 gi|294494960|ref|YP_003541453.1| - 8.7e-16 57.0 37.7 1.4e-07 31.0 1.8 5.6 6 0 0 6 6 6 3 4Fe-4S binding domain NIR_SIR_ferr PF03460.17 gi|294494960|ref|YP_003541453.1| - 8.7e-13 47.9 0.0 2e-12 46.8 0.0 1.7 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_6 PF12837.7 gi|294494960|ref|YP_003541453.1| - 1.3e-08 34.5 20.2 4.2e-05 23.4 1.5 5.2 7 0 0 7 7 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|294494960|ref|YP_003541453.1| - 7.4e-08 32.4 29.3 0.0026 17.8 0.2 4.4 5 0 0 5 5 4 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|294494960|ref|YP_003541453.1| - 1.1e-07 32.4 35.0 2.6e-05 24.7 10.9 4.9 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294494960|ref|YP_003541453.1| - 2.1e-07 31.0 33.9 2e-06 27.8 10.0 4.3 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|294494960|ref|YP_003541453.1| - 2.4e-06 27.6 25.9 9.1e-06 25.7 7.4 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294494960|ref|YP_003541453.1| - 1.5e-05 25.9 29.3 0.086 13.8 0.2 5.5 5 1 0 5 5 5 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|294494960|ref|YP_003541453.1| - 6.2e-05 22.8 40.7 0.0013 18.7 1.4 5.5 6 0 0 6 6 5 3 4Fe-4S binding domain Fer4_13 PF13370.6 gi|294494960|ref|YP_003541453.1| - 0.012 16.1 19.0 1.9 9.1 1.0 4.8 5 0 0 5 5 5 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|294494960|ref|YP_003541453.1| - 0.022 15.2 1.4 0.022 15.2 1.4 6.3 7 0 0 7 7 6 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|294494960|ref|YP_003541453.1| - 0.032 15.0 29.4 0.079 13.7 2.0 4.8 4 2 1 5 5 3 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|294494960|ref|YP_003541453.1| - 0.041 14.3 28.2 0.22 12.0 0.4 4.9 5 1 0 5 5 4 0 4Fe-4S dicluster domain DUF3139 PF11337.8 gi|294494960|ref|YP_003541453.1| - 0.14 12.9 1.2 0.41 11.3 1.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) Fer4_22 PF17179.4 gi|294494960|ref|YP_003541453.1| - 0.17 12.8 22.3 0.29 12.0 4.6 4.5 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|294494960|ref|YP_003541453.1| - 0.88 10.2 31.0 0.19 12.3 0.7 5.1 4 1 1 5 5 5 0 4Fe-4S dicluster domain Nitro_FeMo-Co PF02579.17 gi|294494961|ref|YP_003541454.1| - 2.6e-18 66.2 0.0 3.3e-18 65.8 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor IpgD PF05925.12 gi|294494961|ref|YP_003541454.1| - 0.042 12.4 0.2 0.046 12.3 0.2 1.0 1 0 0 1 1 1 0 Enterobacterial virulence protein IpgD Nitro_FeMo-Co PF02579.17 gi|294494962|ref|YP_003541455.1| - 6.1e-24 84.2 0.3 7.8e-24 83.8 0.3 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor TMP_2 PF06791.13 gi|294494962|ref|YP_003541455.1| - 0.00034 20.4 1.1 0.00039 20.1 1.1 1.1 1 0 0 1 1 1 1 Prophage tail length tape measure protein NIF3 PF01784.18 gi|294494962|ref|YP_003541455.1| - 0.0036 17.0 0.0 0.0038 16.9 0.0 1.1 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) DEDD_Tnp_IS110 PF01548.17 gi|294494962|ref|YP_003541455.1| - 0.23 11.4 0.0 0.28 11.0 0.0 1.2 1 0 0 1 1 1 0 Transposase URO-D PF01208.17 gi|294494963|ref|YP_003541456.1| - 2.8e-78 263.5 0.1 3.2e-78 263.3 0.1 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) 2-Hacid_dh_C PF02826.19 gi|294494964|ref|YP_003541457.1| - 9e-05 21.9 0.0 0.00021 20.7 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|294494964|ref|YP_003541457.1| - 0.00012 22.3 0.0 0.00019 21.6 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|294494964|ref|YP_003541457.1| - 0.00032 20.6 0.0 0.00054 19.9 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|294494964|ref|YP_003541457.1| - 0.00065 20.1 0.0 0.0017 18.8 0.0 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|294494964|ref|YP_003541457.1| - 0.00094 19.4 0.0 0.0019 18.4 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain F420_oxidored PF03807.17 gi|294494964|ref|YP_003541457.1| - 0.0038 17.8 0.0 0.014 15.9 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent adh_short PF00106.25 gi|294494964|ref|YP_003541457.1| - 0.0047 16.4 0.1 0.07 12.6 0.0 2.5 3 0 0 3 3 3 1 short chain dehydrogenase ApbA PF02558.16 gi|294494964|ref|YP_003541457.1| - 0.024 14.3 0.0 0.044 13.4 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 gi|294494964|ref|YP_003541457.1| - 0.072 12.4 0.0 0.17 11.2 0.0 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ATP-grasp_3 PF02655.14 gi|294494965|ref|YP_003541458.1| - 1.5e-08 34.8 0.0 2.5e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|294494965|ref|YP_003541458.1| - 0.00093 18.9 0.0 0.0015 18.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon GARS_A PF01071.19 gi|294494965|ref|YP_003541458.1| - 0.0012 18.7 0.1 2.4 7.9 0.0 3.1 2 1 1 3 3 3 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Pyr_redox PF00070.27 gi|294494965|ref|YP_003541458.1| - 0.01 16.3 0.0 0.02 15.4 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase WD40_3 PF15911.5 gi|294494965|ref|YP_003541458.1| - 0.063 13.3 0.0 0.46 10.5 0.0 2.3 2 0 0 2 2 2 0 WD domain, G-beta repeat Dala_Dala_lig_C PF07478.13 gi|294494965|ref|YP_003541458.1| - 0.15 11.5 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus Radical_SAM PF04055.21 gi|294494966|ref|YP_003541459.1| - 1.3e-12 48.4 0.6 2.9e-12 47.3 0.6 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|294494966|ref|YP_003541459.1| - 0.00015 22.0 0.0 0.00026 21.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain His_biosynth PF00977.21 gi|294494966|ref|YP_003541459.1| - 0.00081 18.9 0.0 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Fer4_14 PF13394.6 gi|294494966|ref|YP_003541459.1| - 0.0036 17.4 0.1 0.0076 16.4 0.1 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Phage_ABA_S PF18066.1 gi|294494966|ref|YP_003541459.1| - 0.029 15.1 0.0 0.11 13.2 0.0 1.9 2 0 0 2 2 2 0 Phage ABA sandwich domain BATS PF06968.13 gi|294494966|ref|YP_003541459.1| - 0.03 14.5 0.0 0.087 13.0 0.0 1.8 1 1 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain tRNA-synt_2d PF01409.20 gi|294494967|ref|YP_003541460.1| - 1.1e-11 44.7 0.0 2.1e-08 33.9 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|294494967|ref|YP_003541460.1| - 1.9e-10 40.6 0.0 3.3e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|294494967|ref|YP_003541460.1| - 6.5e-06 25.4 0.2 0.00022 20.4 0.1 2.8 2 1 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.25 gi|294494967|ref|YP_003541460.1| - 6.2e-05 23.0 0.0 0.00033 20.7 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Zn_ribbon_recom PF13408.6 gi|294494967|ref|YP_003541460.1| - 0.082 13.4 0.9 0.082 13.4 0.9 2.1 3 0 0 3 3 3 0 Recombinase zinc beta ribbon domain Aminotran_1_2 PF00155.21 gi|294494968|ref|YP_003541461.1| - 6.2e-47 160.5 0.0 8.5e-47 160.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II zf-like PF04071.12 gi|294494968|ref|YP_003541461.1| - 1.4e-24 85.8 6.9 3.4e-24 84.6 6.9 1.6 1 0 0 1 1 1 1 Cysteine-rich small domain Cys_Met_Meta_PP PF01053.20 gi|294494968|ref|YP_003541461.1| - 0.069 11.7 0.0 0.09 11.3 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_MocR PF12897.7 gi|294494968|ref|YP_003541461.1| - 0.15 10.8 0.0 0.28 9.9 0.0 1.4 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase PAS_9 PF13426.7 gi|294494969|ref|YP_003541462.1| - 1.1e-37 128.5 2.4 6.8e-15 55.2 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|294494969|ref|YP_003541462.1| - 1.4e-31 108.8 0.0 3.5e-15 56.0 0.0 3.7 3 1 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|294494969|ref|YP_003541462.1| - 1.4e-28 99.3 0.0 5e-11 42.8 0.0 3.4 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|294494969|ref|YP_003541462.1| - 1.7e-28 99.3 0.0 5.2e-28 97.8 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|294494969|ref|YP_003541462.1| - 7.5e-22 76.9 0.0 3.8e-06 26.8 0.0 3.4 3 0 0 3 3 3 3 PAS domain HisKA PF00512.25 gi|294494969|ref|YP_003541462.1| - 1.1e-21 76.6 0.2 3.8e-21 74.9 0.0 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 gi|294494969|ref|YP_003541462.1| - 2.4e-18 66.2 0.0 2.2e-06 27.9 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_10 PF13596.6 gi|294494969|ref|YP_003541462.1| - 0.00015 22.3 0.0 0.023 15.3 0.0 2.8 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.6 gi|294494969|ref|YP_003541462.1| - 0.00082 19.2 0.0 0.0023 17.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MEKHLA PF08670.11 gi|294494969|ref|YP_003541462.1| - 0.013 15.3 0.1 0.092 12.6 0.0 2.1 2 0 0 2 2 2 0 MEKHLA domain DUF1864 PF08933.11 gi|294494969|ref|YP_003541462.1| - 0.073 11.8 0.1 0.13 11.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1864) HATPase_c_2 PF13581.6 gi|294494969|ref|YP_003541462.1| - 0.16 11.9 0.0 0.34 10.9 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF5591 PF17884.1 gi|294494970|ref|YP_003541463.1| - 2.6e-17 63.1 0.1 3.9e-17 62.5 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) Citrate_ly_lig PF08218.11 gi|294494970|ref|YP_003541463.1| - 0.0011 18.6 0.1 0.066 12.9 0.1 2.1 1 1 1 2 2 2 2 Citrate lyase ligase C-terminal domain TrmB PF01978.19 gi|294494971|ref|YP_003541464.1| - 4e-18 65.1 0.1 6.2e-18 64.4 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|294494971|ref|YP_003541464.1| - 5.6e-05 23.0 0.0 8.5e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|294494971|ref|YP_003541464.1| - 0.00014 21.6 0.0 0.002 17.9 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.22 gi|294494971|ref|YP_003541464.1| - 0.00065 19.6 0.0 0.0012 18.7 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|294494971|ref|YP_003541464.1| - 0.0053 16.6 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|294494971|ref|YP_003541464.1| - 0.0088 15.9 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|294494971|ref|YP_003541464.1| - 0.033 14.7 0.0 0.076 13.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|294494971|ref|YP_003541464.1| - 0.065 12.8 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|294494971|ref|YP_003541464.1| - 0.08 12.9 0.0 0.29 11.2 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain RP-C PF03428.13 gi|294494971|ref|YP_003541464.1| - 0.14 11.8 0.0 0.85 9.2 0.0 2.0 1 1 1 2 2 2 0 Replication protein C N-terminal domain HTH_20 PF12840.7 gi|294494971|ref|YP_003541464.1| - 0.16 12.1 0.0 0.27 11.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MFS_1 PF07690.16 gi|294494972|ref|YP_003541465.1| - 2.4e-56 191.2 61.6 3.7e-48 164.3 36.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|294494972|ref|YP_003541465.1| - 1.3e-10 40.4 23.2 1.6e-10 40.0 23.2 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.24 gi|294494972|ref|YP_003541465.1| - 3.2e-07 29.6 13.0 3.2e-07 29.6 13.0 2.5 1 1 0 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.6 gi|294494972|ref|YP_003541465.1| - 3.6e-06 25.8 42.7 0.00038 19.1 18.5 2.7 2 1 1 3 3 3 2 MFS/sugar transport protein OATP PF03137.20 gi|294494972|ref|YP_003541465.1| - 0.002 16.5 0.7 0.002 16.5 0.7 3.0 2 1 1 3 3 3 2 Organic Anion Transporter Polypeptide (OATP) family MFS_1_like PF12832.7 gi|294494972|ref|YP_003541465.1| - 0.11 11.4 29.9 1.4 7.7 29.9 2.0 1 1 0 1 1 1 0 MFS_1 like family NYN PF01936.18 gi|294494973|ref|YP_003541466.1| - 2.4e-30 105.9 0.0 4.6e-30 105.0 0.0 1.4 1 0 0 1 1 1 1 NYN domain OST-HTH PF12872.7 gi|294494973|ref|YP_003541466.1| - 6e-13 48.4 0.0 1.3e-12 47.4 0.0 1.5 1 0 0 1 1 1 1 OST-HTH/LOTUS domain PIN7 PF18475.1 gi|294494973|ref|YP_003541466.1| - 0.093 13.4 0.0 0.23 12.1 0.0 1.8 1 1 0 1 1 1 0 PIN domain Aminotran_1_2 PF00155.21 gi|294494974|ref|YP_003541467.1| - 2e-63 214.7 0.0 2.3e-63 214.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|294494974|ref|YP_003541467.1| - 1.2e-12 47.8 0.0 1.7e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|294494974|ref|YP_003541467.1| - 3.7e-08 32.7 0.0 7.6e-08 31.7 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|294494974|ref|YP_003541467.1| - 1.7e-07 30.2 0.0 2.6e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|294494974|ref|YP_003541467.1| - 9.1e-07 28.4 0.0 1.5e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase AsnC_trans_reg PF01037.21 gi|294494975|ref|YP_003541468.1| - 2.7e-14 52.9 0.1 6.3e-14 51.7 0.1 1.6 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|294494975|ref|YP_003541468.1| - 6.1e-10 38.8 0.4 1.1e-09 38.0 0.4 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|294494975|ref|YP_003541468.1| - 8.1e-09 34.9 0.3 2.6e-08 33.3 0.5 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|294494975|ref|YP_003541468.1| - 7e-06 25.9 0.1 2.5e-05 24.2 0.1 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|294494975|ref|YP_003541468.1| - 0.00011 22.2 0.0 0.00024 21.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|294494975|ref|YP_003541468.1| - 0.0016 18.3 1.8 0.0021 17.9 1.2 1.5 2 0 0 2 2 2 1 TFIIE alpha subunit DUF4423 PF14394.6 gi|294494975|ref|YP_003541468.1| - 0.0082 15.9 0.3 0.026 14.3 0.2 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) RcsD_ABL PF16359.5 gi|294494975|ref|YP_003541468.1| - 0.015 15.4 0.1 4.4 7.5 0.0 2.2 2 0 0 2 2 2 0 RcsD-ABL domain Rio2_N PF09202.11 gi|294494975|ref|YP_003541468.1| - 0.029 14.6 0.5 0.65 10.2 0.1 2.2 2 0 0 2 2 2 0 Rio2, N-terminal Rrf2 PF02082.20 gi|294494975|ref|YP_003541468.1| - 0.035 14.4 0.4 0.28 11.5 0.1 2.2 2 0 0 2 2 2 0 Transcriptional regulator MarR_2 PF12802.7 gi|294494975|ref|YP_003541468.1| - 0.045 13.6 0.0 0.19 11.7 0.0 1.9 2 0 0 2 2 2 0 MarR family MarR PF01047.22 gi|294494975|ref|YP_003541468.1| - 0.095 12.6 0.1 0.47 10.4 0.1 1.9 2 0 0 2 2 2 0 MarR family HTH_11 PF08279.12 gi|294494975|ref|YP_003541468.1| - 0.12 12.4 0.4 0.43 10.6 0.4 2.0 1 1 0 1 1 1 0 HTH domain DUF1542 PF07564.11 gi|294494975|ref|YP_003541468.1| - 0.16 12.1 2.3 0.2 11.8 1.1 1.7 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1542) Ribosomal_S8e PF01201.22 gi|294494976|ref|YP_003541469.1| - 2.9e-34 118.2 7.0 3.3e-34 118.0 7.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Lactamase_B_2 PF12706.7 gi|294494977|ref|YP_003541470.1| - 2.7e-23 82.5 0.0 1.8e-21 76.6 0.0 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|294494977|ref|YP_003541470.1| - 5.9e-11 42.7 0.1 8e-09 35.8 0.0 2.7 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|294494977|ref|YP_003541470.1| - 4.7e-05 23.0 0.0 9.4e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 tRNase Z endonuclease NAD_binding_10 PF13460.6 gi|294494977|ref|YP_003541470.1| - 0.017 15.0 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 NAD(P)H-binding NmrA PF05368.13 gi|294494977|ref|YP_003541470.1| - 0.023 14.3 0.0 0.036 13.6 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family AAA PF00004.29 gi|294494979|ref|YP_003541472.1| - 9.5e-36 123.1 0.1 2.2e-35 122.0 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.14 gi|294494979|ref|YP_003541472.1| - 6.1e-08 33.0 0.2 1.7e-07 31.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_lid_3 PF17862.1 gi|294494979|ref|YP_003541472.1| - 1.2e-07 31.4 0.1 3e-07 30.1 0.1 1.7 1 0 0 1 1 1 1 AAA+ lid domain TIP49 PF06068.13 gi|294494979|ref|YP_003541472.1| - 1.4e-06 27.8 0.0 5.6e-06 25.8 0.0 1.9 1 1 1 2 2 2 1 TIP49 P-loop domain AAA_16 PF13191.6 gi|294494979|ref|YP_003541472.1| - 8.2e-06 26.3 0.1 3.8e-05 24.1 0.1 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|294494979|ref|YP_003541472.1| - 1.6e-05 25.2 0.2 0.0013 19.0 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|294494979|ref|YP_003541472.1| - 0.00033 20.7 0.2 0.0052 16.8 0.0 2.9 3 1 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|294494979|ref|YP_003541472.1| - 0.00052 20.2 0.0 0.0011 19.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|294494979|ref|YP_003541472.1| - 0.00053 19.8 0.1 0.005 16.6 0.1 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|294494979|ref|YP_003541472.1| - 0.0033 17.2 0.0 0.0062 16.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_7 PF12775.7 gi|294494979|ref|YP_003541472.1| - 0.0044 16.6 0.0 0.013 15.0 0.0 1.7 2 0 0 2 2 2 1 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|294494979|ref|YP_003541472.1| - 0.0049 16.3 0.0 0.011 15.2 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|294494979|ref|YP_003541472.1| - 0.0071 16.9 0.0 0.015 15.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|294494979|ref|YP_003541472.1| - 0.0091 15.7 0.0 0.024 14.4 0.0 1.7 2 0 0 2 2 1 1 Sigma-54 interaction domain Torsin PF06309.11 gi|294494979|ref|YP_003541472.1| - 0.011 15.8 0.0 0.039 14.0 0.0 1.8 2 0 0 2 2 2 0 Torsin DUF815 PF05673.13 gi|294494979|ref|YP_003541472.1| - 0.013 14.6 0.0 0.028 13.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Cytidylate_kin PF02224.18 gi|294494979|ref|YP_003541472.1| - 0.016 15.0 0.1 0.048 13.4 0.0 1.8 2 0 0 2 2 2 0 Cytidylate kinase AAA_28 PF13521.6 gi|294494979|ref|YP_003541472.1| - 0.019 15.2 0.0 0.04 14.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|294494979|ref|YP_003541472.1| - 0.024 15.0 0.0 0.087 13.2 0.0 2.0 2 0 0 2 2 1 0 RNA helicase TniB PF05621.11 gi|294494979|ref|YP_003541472.1| - 0.031 13.7 0.0 0.091 12.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial TniB protein AAA_24 PF13479.6 gi|294494979|ref|YP_003541472.1| - 0.031 14.0 0.1 0.08 12.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_3 PF07726.11 gi|294494979|ref|YP_003541472.1| - 0.077 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|294494979|ref|YP_003541472.1| - 0.091 12.8 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Parvo_NS1 PF01057.17 gi|294494979|ref|YP_003541472.1| - 0.16 11.0 0.0 0.28 10.2 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Response_reg PF00072.24 gi|294494981|ref|YP_003541474.1| - 3.9e-31 107.5 0.4 4.3e-31 107.4 0.4 1.0 1 0 0 1 1 1 1 Response regulator receiver domain GutM PF06923.11 gi|294494981|ref|YP_003541474.1| - 0.1 12.7 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Glucitol operon activator protein (GutM) Thi4 PF01946.17 gi|294494982|ref|YP_003541475.1| - 4.9e-80 268.1 0.7 5.7e-80 267.9 0.7 1.0 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|294494982|ref|YP_003541475.1| - 5.3e-06 26.0 0.3 7.1e-06 25.6 0.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|294494982|ref|YP_003541475.1| - 1.7e-05 25.0 0.1 3.8e-05 23.8 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|294494982|ref|YP_003541475.1| - 4.2e-05 22.9 0.1 4.5e-05 22.8 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|294494982|ref|YP_003541475.1| - 0.00011 21.5 1.2 0.0003 20.0 0.7 1.9 1 1 1 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|294494982|ref|YP_003541475.1| - 0.00011 21.5 0.1 0.00017 21.0 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|294494982|ref|YP_003541475.1| - 0.003 16.3 1.4 0.0043 15.8 1.4 1.2 1 0 0 1 1 1 1 HI0933-like protein DAO PF01266.24 gi|294494982|ref|YP_003541475.1| - 0.014 15.0 1.2 0.051 13.2 0.4 1.9 1 1 1 2 2 2 0 FAD dependent oxidoreductase GIDA PF01134.22 gi|294494982|ref|YP_003541475.1| - 0.021 13.9 0.3 0.029 13.5 0.3 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|294494982|ref|YP_003541475.1| - 0.036 13.1 0.3 0.087 11.9 0.1 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein K_oxygenase PF13434.6 gi|294494982|ref|YP_003541475.1| - 0.047 12.8 0.0 0.065 12.4 0.0 1.1 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) DUF356 PF04009.12 gi|294494983|ref|YP_003541476.1| - 2.5e-43 146.7 0.0 2.7e-43 146.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF356) P5CR_dimer PF14748.6 gi|294494984|ref|YP_003541477.1| - 9.4e-42 141.5 1.5 1.9e-41 140.5 1.5 1.5 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|294494984|ref|YP_003541477.1| - 7.2e-23 81.0 0.3 1.8e-22 79.7 0.3 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|294494984|ref|YP_003541477.1| - 2.6e-08 34.2 0.6 5.6e-08 33.1 0.6 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|294494984|ref|YP_003541477.1| - 8.7e-05 22.6 3.7 0.00058 19.9 3.7 2.1 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Rossmann-like PF10727.9 gi|294494984|ref|YP_003541477.1| - 0.0001 22.2 1.1 0.00037 20.4 0.0 2.2 1 1 0 2 2 2 1 Rossmann-like domain PDH PF02153.17 gi|294494984|ref|YP_003541477.1| - 0.00011 21.3 0.3 0.00018 20.6 0.3 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|294494984|ref|YP_003541477.1| - 0.0012 18.3 0.2 0.0029 17.0 0.0 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|294494984|ref|YP_003541477.1| - 0.0031 17.8 0.1 0.0072 16.6 0.0 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|294494984|ref|YP_003541477.1| - 0.008 17.0 0.0 0.024 15.5 0.0 1.8 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_7 PF13241.6 gi|294494984|ref|YP_003541477.1| - 0.015 15.7 0.1 0.029 14.8 0.1 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|294494984|ref|YP_003541477.1| - 0.061 13.4 1.5 0.085 12.9 0.5 1.9 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|294494984|ref|YP_003541477.1| - 0.066 12.9 3.3 0.11 12.2 1.9 2.1 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA HTH_19 PF12844.7 gi|294494985|ref|YP_003541478.1| - 8.6e-10 38.5 1.1 1.5e-09 37.7 1.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|294494985|ref|YP_003541478.1| - 5.4e-09 36.0 1.6 8.6e-09 35.3 1.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|294494985|ref|YP_003541478.1| - 1.1e-07 32.1 0.0 1.7e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|294494985|ref|YP_003541478.1| - 3.8e-05 23.5 0.4 6.3e-05 22.8 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|294494985|ref|YP_003541478.1| - 0.043 13.8 0.1 0.069 13.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain AAA PF00004.29 gi|294494986|ref|YP_003541479.1| - 3.7e-44 150.3 0.9 1.3e-43 148.6 0.1 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|294494986|ref|YP_003541479.1| - 1.1e-13 50.8 0.3 2.3e-13 49.7 0.3 1.6 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|294494986|ref|YP_003541479.1| - 8e-08 32.1 0.2 1.5e-07 31.2 0.2 1.5 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_5 PF07728.14 gi|294494986|ref|YP_003541479.1| - 9.8e-08 32.1 0.1 3.6e-07 30.2 0.1 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|294494986|ref|YP_003541479.1| - 6.1e-07 29.7 0.0 1.7e-06 28.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|294494986|ref|YP_003541479.1| - 5.7e-06 26.8 0.6 0.0013 19.2 0.0 2.7 2 1 1 3 3 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|294494986|ref|YP_003541479.1| - 3.3e-05 24.2 0.3 0.0049 17.1 0.0 2.5 1 1 1 2 2 2 1 AAA domain DUF815 PF05673.13 gi|294494986|ref|YP_003541479.1| - 0.00019 20.7 0.0 0.00042 19.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RuvB_N PF05496.12 gi|294494986|ref|YP_003541479.1| - 0.00022 21.0 0.0 0.00058 19.6 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 gi|294494986|ref|YP_003541479.1| - 0.00024 21.6 0.1 0.002 18.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain Troponin PF00992.20 gi|294494986|ref|YP_003541479.1| - 0.0003 21.1 3.4 0.00058 20.2 3.4 1.4 1 0 0 1 1 1 1 Troponin Prot_ATP_OB_N PF17758.1 gi|294494986|ref|YP_003541479.1| - 0.00071 19.2 0.1 0.0016 18.0 0.1 1.6 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain Filament PF00038.21 gi|294494986|ref|YP_003541479.1| - 0.0013 18.4 3.2 0.0021 17.7 3.2 1.2 1 0 0 1 1 1 1 Intermediate filament protein AAA_11 PF13086.6 gi|294494986|ref|YP_003541479.1| - 0.0015 18.4 0.6 0.085 12.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|294494986|ref|YP_003541479.1| - 0.002 18.3 0.0 0.0039 17.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|294494986|ref|YP_003541479.1| - 0.0028 16.9 0.0 0.0055 16.0 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_28 PF13521.6 gi|294494986|ref|YP_003541479.1| - 0.0032 17.7 0.0 0.0057 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.11 gi|294494986|ref|YP_003541479.1| - 0.0034 17.3 0.0 0.0078 16.1 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SKA2 PF16740.5 gi|294494986|ref|YP_003541479.1| - 0.0037 17.0 0.4 0.0089 15.8 0.4 1.6 1 0 0 1 1 1 1 Spindle and kinetochore-associated protein 2 Mg_chelatase PF01078.21 gi|294494986|ref|YP_003541479.1| - 0.0053 16.2 0.1 0.011 15.1 0.1 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI ATPase PF06745.13 gi|294494986|ref|YP_003541479.1| - 0.0077 15.6 1.2 0.5 9.7 0.0 3.0 3 0 0 3 3 3 1 KaiC Sigma54_activat PF00158.26 gi|294494986|ref|YP_003541479.1| - 0.011 15.4 0.0 0.12 12.1 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|294494986|ref|YP_003541479.1| - 0.011 15.4 0.2 0.027 14.2 0.0 1.7 2 0 0 2 2 1 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|294494986|ref|YP_003541479.1| - 0.013 15.8 0.0 0.04 14.3 0.0 1.9 1 0 0 1 1 1 0 RNA helicase APG6_N PF17675.1 gi|294494986|ref|YP_003541479.1| - 0.017 15.7 1.5 0.039 14.5 1.5 1.6 1 0 0 1 1 1 0 Apg6 coiled-coil region AAA_30 PF13604.6 gi|294494986|ref|YP_003541479.1| - 0.017 14.8 0.1 0.044 13.5 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|294494986|ref|YP_003541479.1| - 0.018 14.5 0.0 0.041 13.4 0.0 1.5 1 1 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|294494986|ref|YP_003541479.1| - 0.027 14.4 0.4 0.27 11.1 0.0 2.7 2 1 1 3 3 3 0 NACHT domain Fmp27_WPPW PF10359.9 gi|294494986|ref|YP_003541479.1| - 0.035 13.0 0.2 0.05 12.5 0.2 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain AAA_24 PF13479.6 gi|294494986|ref|YP_003541479.1| - 0.036 13.8 0.4 0.41 10.4 0.0 2.5 3 0 0 3 3 2 0 AAA domain AAA_14 PF13173.6 gi|294494986|ref|YP_003541479.1| - 0.051 13.6 0.1 0.19 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain NAGLU_N PF12971.7 gi|294494986|ref|YP_003541479.1| - 0.054 13.3 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain AAA_25 PF13481.6 gi|294494986|ref|YP_003541479.1| - 0.06 12.9 0.7 0.66 9.5 0.0 2.7 2 1 1 3 3 3 0 AAA domain TsaE PF02367.17 gi|294494986|ref|YP_003541479.1| - 0.065 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran_Xtn PF12848.7 gi|294494986|ref|YP_003541479.1| - 0.067 13.2 1.9 0.14 12.2 1.5 1.7 2 0 0 2 2 1 0 ABC transporter Torsin PF06309.11 gi|294494986|ref|YP_003541479.1| - 0.075 13.1 0.0 0.2 11.8 0.0 1.6 1 0 0 1 1 1 0 Torsin Tektin PF03148.14 gi|294494986|ref|YP_003541479.1| - 0.077 11.7 2.8 0.12 11.1 1.5 1.8 2 0 0 2 2 2 0 Tektin family NTPase_1 PF03266.15 gi|294494986|ref|YP_003541479.1| - 0.081 12.8 0.1 0.32 10.9 0.0 2.1 2 0 0 2 2 1 0 NTPase Zeta_toxin PF06414.12 gi|294494986|ref|YP_003541479.1| - 0.097 11.9 0.0 0.24 10.7 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin ADIP PF11559.8 gi|294494986|ref|YP_003541479.1| - 0.098 12.7 6.3 0.19 11.8 6.3 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding AKNA PF12443.8 gi|294494986|ref|YP_003541479.1| - 0.11 13.2 1.0 0.22 12.2 1.0 1.5 1 0 0 1 1 1 0 AT-hook-containing transcription factor Parvo_NS1 PF01057.17 gi|294494986|ref|YP_003541479.1| - 0.13 11.3 0.0 0.27 10.3 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF2681 PF10883.8 gi|294494986|ref|YP_003541479.1| - 0.29 11.5 2.1 0.55 10.7 2.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) bZIP_2 PF07716.15 gi|294494986|ref|YP_003541479.1| - 0.76 9.9 7.0 0.5 10.5 1.2 2.4 1 1 1 2 2 2 0 Basic region leucine zipper ZapB PF06005.12 gi|294494986|ref|YP_003541479.1| - 1.2 9.6 5.9 1.2 9.6 3.2 2.3 2 0 0 2 2 1 0 Cell division protein ZapB DUF99 PF01949.16 gi|294494987|ref|YP_003541480.1| - 2.6e-49 167.1 0.0 2.9e-49 167.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Endonuclease_5 PF04493.14 gi|294494987|ref|YP_003541480.1| - 0.0071 16.0 0.1 0.017 14.8 0.0 1.7 2 0 0 2 2 2 1 Endonuclease V PGM_PMM_I PF02878.16 gi|294494988|ref|YP_003541481.1| - 1.9e-42 144.3 0.1 4.9e-42 142.9 0.1 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|294494988|ref|YP_003541481.1| - 4.7e-27 94.6 0.0 9.8e-27 93.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|294494988|ref|YP_003541481.1| - 4.7e-23 81.6 0.0 1.1e-22 80.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|294494988|ref|YP_003541481.1| - 1.1e-13 51.1 0.1 3.3e-13 49.6 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_29 PF03141.16 gi|294494988|ref|YP_003541481.1| - 0.042 12.4 0.0 0.065 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase SRP19 PF01922.17 gi|294494989|ref|YP_003541482.1| - 2.2e-21 76.6 0.1 2.6e-21 76.3 0.1 1.1 1 0 0 1 1 1 1 SRP19 protein Sec61_beta PF03911.16 gi|294494990|ref|YP_003541483.1| - 7.4e-17 61.1 0.0 1.1e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 Sec61beta family IF-2B PF01008.17 gi|294494991|ref|YP_003541484.1| - 5.1e-84 281.8 0.0 6.1e-84 281.6 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family HD PF01966.22 gi|294494992|ref|YP_003541485.1| - 1.7e-11 44.4 0.0 3.7e-11 43.3 0.0 1.7 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|294494992|ref|YP_003541485.1| - 0.006 16.1 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 HDOD domain GCD14 PF08704.10 gi|294494993|ref|YP_003541486.1| - 1.2e-15 57.9 0.1 2.4e-12 47.0 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|294494993|ref|YP_003541486.1| - 9e-10 38.5 0.1 1.2e-09 38.1 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|294494993|ref|YP_003541486.1| - 1.4e-08 34.2 0.0 2e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|294494993|ref|YP_003541486.1| - 9.7e-08 32.0 0.0 1.4e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|294494993|ref|YP_003541486.1| - 1.2e-07 32.3 0.1 2.1e-07 31.6 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|294494993|ref|YP_003541486.1| - 4.6e-05 23.4 0.2 8.1e-05 22.6 0.0 1.4 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|294494993|ref|YP_003541486.1| - 6.5e-05 23.5 0.1 0.00011 22.7 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|294494993|ref|YP_003541486.1| - 0.00028 20.4 0.1 0.00034 20.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|294494993|ref|YP_003541486.1| - 0.0027 17.3 0.1 0.0048 16.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|294494993|ref|YP_003541486.1| - 0.0095 15.4 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase TRM PF02005.16 gi|294494993|ref|YP_003541486.1| - 0.018 14.2 0.0 0.022 14.0 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_23 PF13489.6 gi|294494993|ref|YP_003541486.1| - 0.022 14.6 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|294494993|ref|YP_003541486.1| - 0.043 14.9 0.0 0.13 13.3 0.0 1.9 1 0 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|294494993|ref|YP_003541486.1| - 0.089 12.4 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_12 PF08242.12 gi|294494993|ref|YP_003541486.1| - 0.13 13.0 0.0 0.22 12.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain T2SSB PF16537.5 gi|294494993|ref|YP_003541486.1| - 0.15 11.7 0.0 0.34 10.6 0.0 1.5 1 0 0 1 1 1 0 Type II secretion system protein B zf-like PF04071.12 gi|294494994|ref|YP_003541487.1| - 2.1e-26 91.6 5.6 6e-26 90.2 5.6 1.7 1 0 0 1 1 1 1 Cysteine-rich small domain Aminotran_1_2 PF00155.21 gi|294494994|ref|YP_003541487.1| - 1.7e-25 90.0 0.0 2.8e-25 89.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II CobD_Cbib PF03186.13 gi|294494995|ref|YP_003541488.1| - 9.6e-89 297.3 0.1 1.2e-88 296.9 0.1 1.1 1 0 0 1 1 1 1 CobD/Cbib protein AmpE PF17113.5 gi|294494995|ref|YP_003541488.1| - 0.0064 15.9 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Regulatory signalling modulator protein AmpE PgpA PF04608.13 gi|294494996|ref|YP_003541489.1| - 9.9e-07 28.9 0.0 1.3e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A CobS PF02654.15 gi|294494997|ref|YP_003541490.1| - 2.4e-36 125.9 15.8 2.8e-36 125.6 15.8 1.1 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase NTP_transf_3 PF12804.7 gi|294494998|ref|YP_003541491.1| - 2e-14 54.2 0.0 2.7e-14 53.8 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|294494998|ref|YP_003541491.1| - 1.3e-05 25.2 0.0 2.2e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 gi|294494998|ref|YP_003541491.1| - 4.9e-05 23.2 0.0 0.0001 22.1 0.0 1.6 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CofC PF01983.16 gi|294494998|ref|YP_003541491.1| - 0.00063 19.0 0.1 0.0013 18.0 0.0 1.5 2 0 0 2 2 2 1 Guanylyl transferase CofC like NTP_transferase PF00483.23 gi|294494998|ref|YP_003541491.1| - 0.027 14.0 0.0 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyl transferase ATPase PF06745.13 gi|294495000|ref|YP_003541493.1| - 6.3e-50 169.7 1.0 7.2e-50 169.5 1.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|294495000|ref|YP_003541493.1| - 1.1e-06 27.6 0.3 1.6e-06 27.1 0.2 1.2 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.15 gi|294495000|ref|YP_003541493.1| - 0.00033 20.1 0.3 0.00063 19.2 0.1 1.7 2 1 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|294495000|ref|YP_003541493.1| - 0.0023 17.6 0.0 0.0035 16.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|294495000|ref|YP_003541493.1| - 0.0026 17.1 0.5 0.0086 15.4 0.4 1.8 2 0 0 2 2 2 1 Rad51 AAA PF00004.29 gi|294495000|ref|YP_003541493.1| - 0.0066 16.9 0.6 0.02 15.3 0.6 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.9 gi|294495000|ref|YP_003541493.1| - 0.014 14.7 0.0 0.02 14.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MEDS PF14417.6 gi|294495000|ref|YP_003541493.1| - 0.029 14.2 0.0 0.052 13.4 0.0 1.4 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_24 PF13479.6 gi|294495000|ref|YP_003541493.1| - 0.036 13.8 0.1 0.062 13.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain DUF835 PF05763.12 gi|294495000|ref|YP_003541493.1| - 0.071 12.9 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF835) MobB PF03205.14 gi|294495000|ref|YP_003541493.1| - 0.1 12.5 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Rad51 PF08423.11 gi|294495001|ref|YP_003541494.1| - 3.9e-35 121.4 0.2 4.8e-35 121.1 0.2 1.0 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|294495001|ref|YP_003541494.1| - 1.7e-12 47.3 0.1 2.3e-12 47.0 0.1 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|294495001|ref|YP_003541494.1| - 7e-12 45.2 1.1 5.5e-11 42.3 1.1 1.9 1 1 0 1 1 1 1 KaiC AAA_24 PF13479.6 gi|294495001|ref|YP_003541494.1| - 3.5e-07 30.2 0.0 5.6e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|294495001|ref|YP_003541494.1| - 8e-07 28.8 0.0 2.4e-06 27.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|294495001|ref|YP_003541494.1| - 3.7e-06 26.7 0.0 5.7e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Zot PF05707.12 gi|294495001|ref|YP_003541494.1| - 0.00016 21.4 0.1 0.00019 21.1 0.1 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) CbiA PF01656.23 gi|294495001|ref|YP_003541494.1| - 0.00072 19.6 0.0 0.00094 19.2 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DnaB_C PF03796.15 gi|294495001|ref|YP_003541494.1| - 0.0023 17.3 0.0 0.0092 15.3 0.0 1.8 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain DUF2075 PF09848.9 gi|294495001|ref|YP_003541494.1| - 0.0034 16.7 0.0 0.0041 16.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.27 gi|294495001|ref|YP_003541494.1| - 0.0041 17.6 0.1 0.0067 16.9 0.1 1.4 1 1 0 1 1 1 1 ABC transporter ATPase_2 PF01637.18 gi|294495001|ref|YP_003541494.1| - 0.0066 16.4 0.1 0.0087 16.0 0.1 1.3 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea CLP1_P PF16575.5 gi|294495001|ref|YP_003541494.1| - 0.0097 15.7 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CelD_N PF02927.14 gi|294495001|ref|YP_003541494.1| - 0.012 16.5 0.0 5.7 7.9 0.0 2.3 2 0 0 2 2 2 0 Cellulase N-terminal ig-like domain TrwB_AAD_bind PF10412.9 gi|294495001|ref|YP_003541494.1| - 0.013 14.5 0.0 0.071 12.0 0.0 2.0 2 1 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|294495001|ref|YP_003541494.1| - 0.02 15.2 0.1 0.04 14.2 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|294495001|ref|YP_003541494.1| - 0.03 14.7 0.0 0.059 13.8 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|294495001|ref|YP_003541494.1| - 0.032 13.7 0.0 0.069 12.6 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein ArsA_ATPase PF02374.15 gi|294495001|ref|YP_003541494.1| - 0.037 13.2 0.0 0.057 12.6 0.0 1.2 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_28 PF13521.6 gi|294495001|ref|YP_003541494.1| - 0.057 13.7 0.0 0.1 12.9 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_31 PF13614.6 gi|294495001|ref|YP_003541494.1| - 0.063 13.2 0.0 0.097 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Glutaredoxin PF00462.24 gi|294495002|ref|YP_003541495.1| - 3.8e-08 33.4 0.1 8.2e-08 32.4 0.0 1.6 2 0 0 2 2 2 1 Glutaredoxin DUF836 PF05768.14 gi|294495002|ref|YP_003541495.1| - 0.00018 21.9 0.0 0.00021 21.6 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N_3 PF13417.6 gi|294495002|ref|YP_003541495.1| - 0.0018 18.7 0.0 0.0021 18.4 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.6 gi|294495002|ref|YP_003541495.1| - 0.032 14.7 0.0 0.034 14.6 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain CtIP_N PF10482.9 gi|294495002|ref|YP_003541495.1| - 0.09 12.8 0.0 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 Tumour-suppressor protein CtIP N-terminal domain GST_N PF02798.20 gi|294495002|ref|YP_003541495.1| - 0.16 12.3 0.0 0.2 12.0 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain NRDD PF13597.6 gi|294495003|ref|YP_003541496.1| - 2.1e-154 515.4 0.0 2.5e-154 515.2 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase DUF2953 PF11167.8 gi|294495003|ref|YP_003541496.1| - 0.13 12.4 0.3 0.33 11.0 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2953) Radical_SAM PF04055.21 gi|294495004|ref|YP_003541497.1| - 1.4e-13 51.5 0.0 1.9e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|294495004|ref|YP_003541497.1| - 1.2e-09 38.5 0.0 2.1e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|294495004|ref|YP_003541497.1| - 6.9e-07 29.4 0.0 1.2e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain TatD_DNase PF01026.21 gi|294495004|ref|YP_003541497.1| - 0.021 14.2 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 TatD related DNase AIRS PF00586.24 gi|294495005|ref|YP_003541498.1| - 1.8e-20 73.4 1.6 2.2e-20 73.1 0.5 1.7 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|294495005|ref|YP_003541498.1| - 3.9e-08 33.6 0.1 6.4e-08 32.9 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain S-layer PF07752.11 gi|294495006|ref|YP_003541499.1| - 1.3e-200 663.5 39.4 1.5e-101 338.9 15.9 3.6 3 0 0 3 3 3 2 S-layer protein DUF2369 PF10179.9 gi|294495006|ref|YP_003541499.1| - 1.5e-12 47.7 17.0 0.025 15.0 0.2 4.7 4 0 0 4 4 4 4 Uncharacterised conserved protein (DUF2369) Pur_ac_phosph_N PF16656.5 gi|294495006|ref|YP_003541499.1| - 9.3e-09 35.7 45.2 0.027 15.0 4.5 5.1 2 1 2 4 4 4 4 Purple acid Phosphatase, N-terminal domain CarbopepD_reg_2 PF13715.6 gi|294495006|ref|YP_003541499.1| - 2.8e-08 33.6 3.4 0.0002 21.3 0.0 4.1 4 0 0 4 4 4 2 CarboxypepD_reg-like domain fn3 PF00041.21 gi|294495006|ref|YP_003541499.1| - 5.9e-08 33.0 18.2 0.16 12.4 0.4 5.5 5 0 0 5 5 5 4 Fibronectin type III domain CarboxypepD_reg PF13620.6 gi|294495006|ref|YP_003541499.1| - 8e-07 29.3 1.0 0.02 15.1 0.0 4.1 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain PEGA PF08308.11 gi|294495006|ref|YP_003541499.1| - 3.7e-05 23.5 0.8 0.0016 18.2 0.0 4.1 5 0 0 5 5 4 1 PEGA domain DUF4198 PF10670.9 gi|294495006|ref|YP_003541499.1| - 9.9e-05 22.8 0.7 0.11 12.9 0.1 3.0 3 0 0 3 3 3 2 Domain of unknown function (DUF4198) Filamin PF00630.19 gi|294495006|ref|YP_003541499.1| - 0.00038 21.2 0.4 0.17 12.7 0.1 3.7 2 1 0 2 2 2 1 Filamin/ABP280 repeat Germane PF10646.9 gi|294495006|ref|YP_003541499.1| - 0.0012 19.6 7.5 4.8 8.0 0.2 4.4 4 0 0 4 4 4 2 Sporulation and spore germination tRNA-synt_1c_C PF03950.18 gi|294495006|ref|YP_003541499.1| - 0.0053 16.7 6.3 1 9.2 0.1 3.6 3 1 1 4 4 4 2 tRNA synthetases class I (E and Q), anti-codon binding domain DUF916 PF06030.12 gi|294495006|ref|YP_003541499.1| - 0.0077 16.3 1.2 2.5 8.2 0.0 3.7 2 1 0 2 2 2 1 Bacterial protein of unknown function (DUF916) ALS_ss_C PF10369.9 gi|294495006|ref|YP_003541499.1| - 0.016 15.4 0.1 13 6.1 0.0 3.0 2 0 0 2 2 2 0 Small subunit of acetolactate synthase DUF1533 PF07550.11 gi|294495006|ref|YP_003541499.1| - 0.019 14.8 3.3 12 5.9 0.0 4.2 4 0 0 4 4 3 0 Protein of unknown function (DUF1533) Cupredoxin_1 PF13473.6 gi|294495006|ref|YP_003541499.1| - 0.048 13.8 0.1 1.2 9.3 0.0 3.3 3 0 0 3 3 3 0 Cupredoxin-like domain YtkA PF13115.6 gi|294495006|ref|YP_003541499.1| - 0.053 14.1 9.6 0.64 10.7 0.3 5.2 6 0 0 6 6 6 0 YtkA-like Minor_capsid_3 PF12691.7 gi|294495006|ref|YP_003541499.1| - 0.1 13.0 5.8 2.9 8.3 0.1 4.2 4 0 0 4 4 4 0 Minor capsid protein from bacteriophage DUF1205 PF06722.12 gi|294495006|ref|YP_003541499.1| - 0.17 12.0 3.4 1e+02 3.1 0.1 4.2 4 0 0 4 4 4 0 Protein of unknown function (DUF1205) HTH_3 PF01381.22 gi|294495007|ref|YP_003541500.1| - 3.4e-06 27.0 0.6 1.3e-05 25.1 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix PrpR_N PF06506.11 gi|294495007|ref|YP_003541500.1| - 0.013 15.1 0.3 0.021 14.4 0.3 1.2 1 0 0 1 1 1 0 Propionate catabolism activator CoA_trans PF01144.23 gi|294495007|ref|YP_003541500.1| - 0.026 13.9 0.0 0.036 13.5 0.0 1.3 1 0 0 1 1 1 0 Coenzyme A transferase HTH_31 PF13560.6 gi|294495007|ref|YP_003541500.1| - 0.13 12.6 0.0 0.29 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain NMT1_2 PF13379.6 gi|294495008|ref|YP_003541501.1| - 1.6e-37 129.6 0.0 2.3e-37 129.1 0.0 1.2 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|294495008|ref|YP_003541501.1| - 1.4e-17 64.4 0.0 2e-17 63.8 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|294495008|ref|YP_003541501.1| - 6.5e-09 35.7 0.0 8.9e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_3 PF16868.5 gi|294495008|ref|YP_003541501.1| - 0.00021 20.8 0.0 0.001 18.6 0.0 2.0 1 1 1 2 2 2 1 NMT1-like family LysR_substrate PF03466.20 gi|294495008|ref|YP_003541501.1| - 0.0033 16.8 0.0 0.088 12.2 0.0 2.2 1 1 1 2 2 2 1 LysR substrate binding domain SBP_bac_3 PF00497.20 gi|294495008|ref|YP_003541501.1| - 0.0049 16.3 0.0 0.043 13.2 0.0 2.5 2 1 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 Ppnp PF06865.11 gi|294495008|ref|YP_003541501.1| - 0.066 13.6 0.0 0.16 12.4 0.0 1.6 1 0 0 1 1 1 0 Pyrimidine/purine nucleoside phosphorylase BPD_transp_1 PF00528.22 gi|294495009|ref|YP_003541502.1| - 2e-18 66.8 11.8 2e-18 66.8 11.8 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|294495010|ref|YP_003541503.1| - 3.4e-32 111.8 0.0 5.3e-32 111.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|294495010|ref|YP_003541503.1| - 7.6e-11 42.4 0.0 0.00023 21.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|294495010|ref|YP_003541503.1| - 1.2e-06 29.0 0.1 9.4e-06 26.1 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|294495010|ref|YP_003541503.1| - 1.3e-05 25.4 0.1 8.5e-05 22.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|294495010|ref|YP_003541503.1| - 7.7e-05 22.9 0.0 0.00015 21.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|294495010|ref|YP_003541503.1| - 0.00024 21.6 0.0 0.0009 19.7 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|294495010|ref|YP_003541503.1| - 0.00027 20.9 0.1 0.00058 19.8 0.0 1.5 2 0 0 2 2 1 1 RsgA GTPase AAA_23 PF13476.6 gi|294495010|ref|YP_003541503.1| - 0.0004 20.9 0.0 0.0008 20.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|294495010|ref|YP_003541503.1| - 0.00087 19.6 0.0 0.0046 17.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|294495010|ref|YP_003541503.1| - 0.0035 17.3 0.0 0.0079 16.1 0.0 1.6 2 0 0 2 2 2 1 Rad17 P-loop domain ATPase_2 PF01637.18 gi|294495010|ref|YP_003541503.1| - 0.0037 17.2 0.0 0.035 14.0 0.0 2.0 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|294495010|ref|YP_003541503.1| - 0.0054 16.5 0.0 0.029 14.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|294495010|ref|YP_003541503.1| - 0.0067 16.1 0.0 0.016 14.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|294495010|ref|YP_003541503.1| - 0.0071 16.3 0.1 3.7 7.4 0.0 2.2 2 0 0 2 2 2 2 NTPase AAA_15 PF13175.6 gi|294495010|ref|YP_003541503.1| - 0.0077 16.0 0.0 0.13 11.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|294495010|ref|YP_003541503.1| - 0.0081 16.1 0.0 0.022 14.7 0.0 1.7 2 0 0 2 2 2 1 NACHT domain AAA_24 PF13479.6 gi|294495010|ref|YP_003541503.1| - 0.013 15.3 0.1 0.16 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|294495010|ref|YP_003541503.1| - 0.014 15.9 0.0 0.045 14.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|294495010|ref|YP_003541503.1| - 0.017 14.6 0.0 1.6 8.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|294495010|ref|YP_003541503.1| - 0.018 15.0 0.0 0.066 13.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.25 gi|294495010|ref|YP_003541503.1| - 0.024 14.3 0.0 0.041 13.5 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.22 gi|294495010|ref|YP_003541503.1| - 0.04 13.1 0.0 0.096 11.8 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain MMR_HSR1 PF01926.23 gi|294495010|ref|YP_003541503.1| - 0.062 13.4 0.0 0.24 11.5 0.0 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|294495010|ref|YP_003541503.1| - 0.066 13.6 0.0 0.61 10.5 0.0 2.3 2 0 0 2 2 2 0 RNA helicase IstB_IS21 PF01695.17 gi|294495010|ref|YP_003541503.1| - 0.066 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|294495010|ref|YP_003541503.1| - 0.079 12.5 0.0 0.3 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|294495010|ref|YP_003541503.1| - 0.096 12.4 0.1 0.39 10.5 0.0 1.9 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation PhoH PF02562.16 gi|294495010|ref|YP_003541503.1| - 0.11 12.0 0.0 0.27 10.7 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein AAA_14 PF13173.6 gi|294495010|ref|YP_003541503.1| - 0.12 12.4 0.1 0.36 10.9 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|294495010|ref|YP_003541503.1| - 0.13 12.5 0.0 1 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain Bactofilin PF04519.13 gi|294495011|ref|YP_003541504.1| - 1.9e-06 28.1 0.3 7.9e-06 26.1 0.0 1.9 1 1 1 2 2 2 1 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|294495011|ref|YP_003541504.1| - 1.2e-05 24.8 1.6 0.037 13.8 0.1 3.0 3 1 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) TylF PF05711.11 gi|294495011|ref|YP_003541504.1| - 0.17 11.1 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Macrocin-O-methyltransferase (TylF) Prenyltrans PF00432.21 gi|294495012|ref|YP_003541505.1| - 3.7e-07 29.7 1.7 0.0019 17.9 0.0 3.4 4 0 0 4 4 4 2 Prenyltransferase and squalene oxidase repeat SQHop_cyclase_C PF13243.6 gi|294495012|ref|YP_003541505.1| - 6.9e-05 22.1 2.7 0.041 13.0 0.2 3.1 2 1 1 3 3 3 2 Squalene-hopene cyclase C-terminal domain SQHop_cyclase_N PF13249.6 gi|294495012|ref|YP_003541505.1| - 0.0004 19.6 0.6 0.00082 18.6 0.2 1.7 2 0 0 2 2 2 1 Squalene-hopene cyclase N-terminal domain Pec_lyase PF09492.10 gi|294495012|ref|YP_003541505.1| - 0.0036 16.7 0.0 1.6 8.0 0.0 3.0 3 0 0 3 3 3 1 Pectic acid lyase TED_complement PF07678.14 gi|294495012|ref|YP_003541505.1| - 0.0056 15.8 1.5 0.12 11.4 0.1 2.7 2 1 1 3 3 3 1 A-macroglobulin TED domain DUF169 PF02596.15 gi|294495013|ref|YP_003541506.1| - 3.7e-55 187.1 0.2 4.2e-55 186.9 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 ParA PF10609.9 gi|294495014|ref|YP_003541507.1| - 1.2e-98 329.5 0.4 1.4e-98 329.3 0.4 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|294495014|ref|YP_003541507.1| - 5.5e-15 55.6 0.0 9.5e-15 54.8 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|294495014|ref|YP_003541507.1| - 6.3e-12 45.8 0.2 6.4e-10 39.2 0.2 2.2 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|294495014|ref|YP_003541507.1| - 5e-10 39.0 0.1 6.1e-09 35.5 0.1 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|294495014|ref|YP_003541507.1| - 3e-08 33.4 0.1 2.8e-06 27.0 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|294495014|ref|YP_003541507.1| - 3.4e-06 26.5 0.0 5.1e-06 26.0 0.0 1.4 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|294495014|ref|YP_003541507.1| - 1.9e-05 24.6 1.2 0.018 14.8 0.1 2.5 2 1 0 2 2 2 2 AAA domain MeaB PF03308.16 gi|294495014|ref|YP_003541507.1| - 0.00031 19.8 0.8 0.00062 18.8 0.1 1.8 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 gi|294495014|ref|YP_003541507.1| - 0.00036 20.4 0.0 0.00065 19.5 0.0 1.4 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 gi|294495014|ref|YP_003541507.1| - 0.00084 19.0 0.0 0.0013 18.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain VirC1 PF07015.11 gi|294495014|ref|YP_003541507.1| - 0.0012 18.1 0.0 0.002 17.5 0.0 1.2 1 0 0 1 1 1 1 VirC1 protein CBP_BcsQ PF06564.12 gi|294495014|ref|YP_003541507.1| - 0.0014 18.1 0.1 0.045 13.2 0.1 2.0 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|294495014|ref|YP_003541507.1| - 0.0017 18.0 0.1 0.0029 17.3 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 gi|294495014|ref|YP_003541507.1| - 0.0055 16.6 0.6 0.019 14.9 0.3 1.8 2 0 0 2 2 2 1 RsgA GTPase APS_kinase PF01583.20 gi|294495014|ref|YP_003541507.1| - 0.0078 16.1 0.1 0.013 15.4 0.1 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase Zeta_toxin PF06414.12 gi|294495014|ref|YP_003541507.1| - 0.0088 15.3 0.0 0.014 14.6 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.6 gi|294495014|ref|YP_003541507.1| - 0.016 15.0 0.1 0.028 14.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|294495014|ref|YP_003541507.1| - 0.029 14.5 0.0 0.045 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|294495014|ref|YP_003541507.1| - 0.036 13.5 0.0 0.058 12.8 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NTPase_1 PF03266.15 gi|294495014|ref|YP_003541507.1| - 0.089 12.7 0.2 0.31 11.0 0.0 1.9 2 1 0 2 2 2 0 NTPase SR1P PF13790.6 gi|294495014|ref|YP_003541507.1| - 0.093 12.9 0.2 0.16 12.1 0.2 1.3 1 0 0 1 1 1 0 SR1 protein RNA_helicase PF00910.22 gi|294495014|ref|YP_003541507.1| - 0.12 12.7 0.1 0.25 11.7 0.1 1.5 1 0 0 1 1 1 0 RNA helicase DUF134 PF02001.16 gi|294495015|ref|YP_003541508.1| - 1.7e-31 108.7 0.1 1.8e-31 108.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|294495015|ref|YP_003541508.1| - 1.6e-05 24.5 0.1 2.4e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|294495015|ref|YP_003541508.1| - 0.00018 21.0 0.4 0.00031 20.2 0.4 1.6 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.12 gi|294495015|ref|YP_003541508.1| - 0.00066 19.4 0.1 0.0019 17.9 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_23 PF13384.6 gi|294495015|ref|YP_003541508.1| - 0.002 17.9 0.1 0.0035 17.1 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.11 gi|294495015|ref|YP_003541508.1| - 0.0084 16.0 1.2 0.01 15.8 1.2 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_1 PF00126.27 gi|294495015|ref|YP_003541508.1| - 0.058 13.4 0.1 0.076 13.0 0.1 1.2 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family KORA PF16509.5 gi|294495015|ref|YP_003541508.1| - 0.067 13.5 0.1 0.091 13.0 0.1 1.2 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_28 PF13518.6 gi|294495015|ref|YP_003541508.1| - 0.19 11.9 0.1 0.19 11.9 0.1 2.0 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|294495015|ref|YP_003541508.1| - 0.35 10.9 2.5 0.45 10.6 0.1 2.3 2 1 0 2 2 2 0 Winged helix-turn helix AAA_16 PF13191.6 gi|294495016|ref|YP_003541509.1| - 2.2e-09 37.9 0.0 1.3e-07 32.1 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain Cdc6_C PF09079.11 gi|294495016|ref|YP_003541509.1| - 2.7e-06 27.3 0.0 8.3e-06 25.7 0.0 1.9 1 1 0 1 1 1 1 CDC6, C terminal winged helix domain AAA PF00004.29 gi|294495016|ref|YP_003541509.1| - 2.8e-06 27.8 0.0 7.4e-06 26.4 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|294495016|ref|YP_003541509.1| - 6.7e-05 23.2 0.0 0.00013 22.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|294495016|ref|YP_003541509.1| - 0.00022 21.1 0.0 0.00081 19.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|294495016|ref|YP_003541509.1| - 0.0004 20.0 0.0 0.0026 17.3 0.0 2.0 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_24 PF13479.6 gi|294495016|ref|YP_003541509.1| - 0.0021 17.8 0.0 0.0038 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|294495016|ref|YP_003541509.1| - 0.0022 17.2 0.0 0.0064 15.7 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|294495016|ref|YP_003541509.1| - 0.003 17.5 0.1 0.0074 16.2 0.1 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|294495016|ref|YP_003541509.1| - 0.0033 16.8 0.0 0.0062 16.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein AAA_35 PF14516.6 gi|294495016|ref|YP_003541509.1| - 0.0052 15.7 0.0 0.51 9.1 0.0 2.2 1 1 1 2 2 2 1 AAA-like domain DUF2075 PF09848.9 gi|294495016|ref|YP_003541509.1| - 0.0062 15.8 0.0 0.0097 15.2 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.26 gi|294495016|ref|YP_003541509.1| - 0.014 15.1 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain NB-ARC PF00931.22 gi|294495016|ref|YP_003541509.1| - 0.022 13.9 0.0 0.037 13.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_19 PF13245.6 gi|294495016|ref|YP_003541509.1| - 0.056 13.8 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.14 gi|294495016|ref|YP_003541509.1| - 0.088 12.0 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 KAP family P-loop domain AAA_32 PF13654.6 gi|294495016|ref|YP_003541509.1| - 0.1 11.4 0.0 2.5 6.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|294495016|ref|YP_003541509.1| - 0.1 12.5 0.5 0.45 10.4 0.0 2.3 3 0 0 3 3 3 0 NTPase AAA_25 PF13481.6 gi|294495016|ref|YP_003541509.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|294495016|ref|YP_003541509.1| - 0.15 11.7 0.0 0.42 10.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|294495016|ref|YP_003541509.1| - 0.16 11.0 0.0 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein HTH_1 PF00126.27 gi|294495017|ref|YP_003541510.1| - 4.5e-10 39.3 0.0 6.9e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family TOBE PF03459.17 gi|294495017|ref|YP_003541510.1| - 5.8e-05 23.3 0.1 9.5e-05 22.6 0.1 1.3 1 0 0 1 1 1 1 TOBE domain HTH_23 PF13384.6 gi|294495017|ref|YP_003541510.1| - 0.031 14.1 0.1 0.07 13.0 0.0 1.6 2 0 0 2 2 2 0 Homeodomain-like domain Exo_endo_phos PF03372.23 gi|294495018|ref|YP_003541511.1| - 3.8e-25 88.8 0.1 4.4e-25 88.6 0.1 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|294495018|ref|YP_003541511.1| - 0.00084 19.2 0.0 0.0036 17.1 0.0 2.0 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase Cpn60_TCP1 PF00118.24 gi|294495019|ref|YP_003541512.1| - 2.4e-180 600.4 21.4 2.7e-180 600.2 21.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF5350 PF17299.2 gi|294495020|ref|YP_003541513.1| - 2.2e-26 92.1 8.1 2.3e-26 92.0 8.1 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5350) OpuAC PF04069.12 gi|294495021|ref|YP_003541514.1| - 3.6e-62 210.3 0.2 4.1e-62 210.1 0.2 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system OpuAC PF04069.12 gi|294495022|ref|YP_003541515.1| - 9.7e-64 215.4 5.1 1.1e-63 215.2 5.1 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system BPD_transp_1 PF00528.22 gi|294495023|ref|YP_003541516.1| - 3.8e-27 95.2 26.5 1.7e-26 93.1 12.2 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component DUF1772 PF08592.11 gi|294495023|ref|YP_003541516.1| - 3.5 8.0 6.6 26 5.1 6.4 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) ABC_tran PF00005.27 gi|294495024|ref|YP_003541517.1| - 3e-34 118.5 0.0 7.2e-34 117.2 0.0 1.7 1 0 0 1 1 1 1 ABC transporter CBS PF00571.28 gi|294495024|ref|YP_003541517.1| - 8.3e-11 42.2 0.2 4e-05 24.0 0.0 2.8 2 0 0 2 2 2 2 CBS domain ABC_ATPase PF09818.9 gi|294495024|ref|YP_003541517.1| - 4.8e-06 25.6 0.1 0.14 10.9 0.0 3.1 3 0 0 3 3 3 2 Predicted ATPase of the ABC class AAA_21 PF13304.6 gi|294495024|ref|YP_003541517.1| - 8.7e-06 25.7 0.9 0.049 13.4 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|294495024|ref|YP_003541517.1| - 0.00017 22.0 0.3 0.00037 20.9 0.3 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|294495024|ref|YP_003541517.1| - 0.00095 18.9 0.0 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|294495024|ref|YP_003541517.1| - 0.0012 18.6 0.5 0.2 11.4 0.0 2.4 3 0 0 3 3 3 1 AAA domain RsgA_GTPase PF03193.16 gi|294495024|ref|YP_003541517.1| - 0.0016 18.4 0.0 0.0045 16.9 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|294495024|ref|YP_003541517.1| - 0.0033 17.7 0.6 0.026 14.8 0.6 2.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|294495024|ref|YP_003541517.1| - 0.0095 16.5 0.2 0.024 15.1 0.2 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|294495024|ref|YP_003541517.1| - 0.011 15.1 1.4 0.27 10.7 1.4 2.2 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain DUF5582 PF17819.1 gi|294495024|ref|YP_003541517.1| - 0.035 14.6 0.0 0.1 13.0 0.0 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5582) AAA_33 PF13671.6 gi|294495024|ref|YP_003541517.1| - 0.048 13.8 0.0 0.093 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|294495024|ref|YP_003541517.1| - 0.061 12.5 0.0 0.067 12.3 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit SbcCD_C PF13558.6 gi|294495024|ref|YP_003541517.1| - 0.093 13.0 0.3 0.27 11.5 0.3 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 gi|294495024|ref|YP_003541517.1| - 0.099 12.7 0.4 0.44 10.6 0.1 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|294495024|ref|YP_003541517.1| - 0.14 12.7 0.0 0.37 11.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain NurA PF09376.10 gi|294495025|ref|YP_003541518.1| - 1.5e-08 34.6 0.0 1.8e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 NurA domain DUF87 PF01935.17 gi|294495026|ref|YP_003541519.1| - 3.9e-13 50.0 0.0 1.3e-12 48.3 0.0 1.8 1 1 1 2 2 2 1 Helicase HerA, central domain DUF853 PF05872.12 gi|294495026|ref|YP_003541519.1| - 2.4e-10 39.7 0.0 7e-07 28.2 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.6 gi|294495026|ref|YP_003541519.1| - 1.1e-05 25.7 0.0 0.002 18.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.7 gi|294495026|ref|YP_003541519.1| - 1.9e-05 23.8 0.0 0.092 11.6 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain AAA PF00004.29 gi|294495026|ref|YP_003541519.1| - 6e-05 23.5 0.1 0.51 10.8 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DEAD PF00270.29 gi|294495026|ref|YP_003541519.1| - 6.5e-05 22.8 0.0 0.28 10.9 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_16 PF13191.6 gi|294495026|ref|YP_003541519.1| - 0.00034 21.0 0.0 0.031 14.7 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain TrwB_AAD_bind PF10412.9 gi|294495026|ref|YP_003541519.1| - 0.001 18.1 0.0 0.0016 17.5 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 gi|294495026|ref|YP_003541519.1| - 0.0057 16.7 0.0 0.32 11.0 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_7 PF12775.7 gi|294495026|ref|YP_003541519.1| - 0.0063 16.0 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region PriA_3primeBD PF17764.1 gi|294495026|ref|YP_003541519.1| - 0.039 13.8 0.0 8.8 6.3 0.0 3.1 3 1 0 3 3 3 0 3′ DNA-binding domain (3′BD) T2SSE PF00437.20 gi|294495026|ref|YP_003541519.1| - 0.047 12.7 0.0 0.088 11.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA_helicase PF00910.22 gi|294495026|ref|YP_003541519.1| - 0.076 13.4 0.0 0.19 12.1 0.0 1.7 1 0 0 1 1 1 0 RNA helicase FtsK_SpoIIIE PF01580.18 gi|294495026|ref|YP_003541519.1| - 0.1 12.0 0.0 0.33 10.3 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_33 PF13671.6 gi|294495026|ref|YP_003541519.1| - 0.12 12.5 0.0 0.29 11.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|294495026|ref|YP_003541519.1| - 0.14 11.3 0.0 0.27 10.4 0.0 1.4 1 0 0 1 1 1 0 PIF1-like helicase HATPase_c PF02518.26 gi|294495027|ref|YP_003541520.1| - 7.7e-23 81.1 0.9 2e-22 79.8 0.2 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|294495027|ref|YP_003541520.1| - 7.1e-17 61.6 0.5 8e-16 58.2 0.0 2.7 2 1 0 2 2 2 1 PAS domain PAS_3 PF08447.12 gi|294495027|ref|YP_003541520.1| - 1.9e-09 37.7 0.0 4.5e-09 36.5 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|294495027|ref|YP_003541520.1| - 3e-08 33.5 0.0 7.5e-08 32.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|294495027|ref|YP_003541520.1| - 1e-06 28.9 0.0 1.9e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|294495027|ref|YP_003541520.1| - 1.9e-06 27.8 0.0 4.9e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|294495027|ref|YP_003541520.1| - 1.4e-05 25.0 0.0 5.9e-05 23.0 0.0 2.2 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|294495027|ref|YP_003541520.1| - 0.00064 19.7 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_12 PF18095.1 gi|294495027|ref|YP_003541520.1| - 0.032 13.9 0.0 0.074 12.7 0.0 1.6 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain DUF3303 PF11746.8 gi|294495028|ref|YP_003541521.1| - 5.4e-09 36.2 0.0 6.3e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3303) A2M_BRD PF07703.14 gi|294495029|ref|YP_003541522.1| - 0.014 15.8 0.3 3.3 8.1 0.1 2.7 1 1 1 2 2 2 0 Alpha-2-macroglobulin bait region domain ChiW_Ig_like PF18683.1 gi|294495029|ref|YP_003541522.1| - 0.047 13.9 0.3 0.42 10.9 0.1 2.1 2 1 0 2 2 2 0 Chitinase W immunoglobulin-like domain RHH_1 PF01402.21 gi|294495030|ref|YP_003541523.1| - 0.0041 17.0 0.0 0.0065 16.4 0.0 1.4 1 1 0 1 1 1 1 Ribbon-helix-helix protein, copG family Tho1_MOS11_C PF18592.1 gi|294495030|ref|YP_003541523.1| - 0.072 12.9 0.0 0.089 12.6 0.0 1.1 1 0 0 1 1 1 0 Tho1/MOS11 C-terminal domain AP_endonuc_2 PF01261.24 gi|294495031|ref|YP_003541524.1| - 7.1e-30 104.0 0.0 8.5e-30 103.8 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel RNA_binding PF01877.17 gi|294495032|ref|YP_003541525.1| - 3.2e-13 50.0 0.0 4.9e-13 49.4 0.0 1.3 1 0 0 1 1 1 1 RNA binding AAA_17 PF13207.6 gi|294495033|ref|YP_003541526.1| - 1.7e-18 67.4 0.7 2.6e-18 66.7 0.7 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|294495033|ref|YP_003541526.1| - 2.8e-12 47.3 0.3 3.9e-12 46.9 0.3 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|294495033|ref|YP_003541526.1| - 5.2e-06 26.7 0.0 8e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|294495033|ref|YP_003541526.1| - 0.002 18.2 0.3 0.0024 18.0 0.3 1.2 1 0 0 1 1 1 1 Adenylate kinase CoaE PF01121.20 gi|294495033|ref|YP_003541526.1| - 0.0058 16.3 0.2 0.18 11.4 0.0 2.2 2 0 0 2 2 2 1 Dephospho-CoA kinase Glyco_transf_88 PF16849.5 gi|294495033|ref|YP_003541526.1| - 0.032 13.1 0.2 0.047 12.6 0.2 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 88 P-mevalo_kinase PF04275.14 gi|294495033|ref|YP_003541526.1| - 0.049 13.6 0.2 0.3 11.0 0.0 2.3 1 1 2 3 3 3 0 Phosphomevalonate kinase GatB_Yqey PF02637.18 gi|294495033|ref|YP_003541526.1| - 0.089 12.7 0.2 1.5 8.7 0.1 2.1 1 1 0 2 2 2 0 GatB domain T4-Gluco-transf PF09198.10 gi|294495033|ref|YP_003541526.1| - 0.17 11.5 0.9 0.42 10.3 0.1 1.9 1 1 1 2 2 2 0 Bacteriophage T4 beta-glucosyltransferase Dus PF01207.17 gi|294495034|ref|YP_003541527.1| - 4.5e-77 259.2 0.0 5.4e-77 258.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|294495034|ref|YP_003541527.1| - 4.3e-05 23.1 0.0 0.00015 21.3 0.0 1.7 1 1 1 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|294495034|ref|YP_003541527.1| - 0.0001 21.7 0.1 0.0003 20.2 0.1 1.8 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG SOR_SNZ PF01680.17 gi|294495034|ref|YP_003541527.1| - 0.0031 17.3 0.7 0.21 11.3 0.0 2.2 1 1 1 2 2 2 2 SOR/SNZ family FMN_dh PF01070.18 gi|294495034|ref|YP_003541527.1| - 0.12 11.3 0.3 0.31 10.0 0.3 1.6 1 1 0 1 1 1 0 FMN-dependent dehydrogenase zf-CHCC PF10276.9 gi|294495034|ref|YP_003541527.1| - 0.18 11.9 0.0 0.41 10.7 0.0 1.6 1 0 0 1 1 1 0 Zinc-finger domain POR PF01558.18 gi|294495035|ref|YP_003541528.1| - 1.1e-35 123.3 0.3 1.3e-35 123.0 0.3 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|294495036|ref|YP_003541529.1| - 1.5e-15 56.2 13.3 1.1e-08 34.5 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|294495036|ref|YP_003541529.1| - 3.5e-12 45.8 11.7 8.2e-07 28.8 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|294495036|ref|YP_003541529.1| - 5e-10 39.4 5.9 7e-10 38.9 5.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|294495036|ref|YP_003541529.1| - 7.4e-10 39.3 6.1 0.00018 22.0 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294495036|ref|YP_003541529.1| - 1.3e-09 37.5 9.4 9.7e-05 22.2 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|294495036|ref|YP_003541529.1| - 5.5e-08 32.9 8.1 7.9e-08 32.4 7.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294495036|ref|YP_003541529.1| - 6.9e-08 32.5 6.9 0.0012 19.0 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495036|ref|YP_003541529.1| - 2.7e-07 31.4 7.0 0.00063 20.6 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|294495036|ref|YP_003541529.1| - 1.7e-05 25.3 6.5 0.028 15.0 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|294495036|ref|YP_003541529.1| - 0.00015 22.4 10.6 0.076 13.8 2.7 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|294495036|ref|YP_003541529.1| - 0.00024 21.4 14.9 0.0066 16.9 1.0 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|294495036|ref|YP_003541529.1| - 0.0013 19.2 11.2 0.012 16.1 0.7 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|294495036|ref|YP_003541529.1| - 0.0021 18.5 12.8 0.18 12.2 1.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|294495036|ref|YP_003541529.1| - 0.071 14.0 11.5 0.25 12.2 1.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|294495036|ref|YP_003541529.1| - 0.52 11.4 15.5 2.4 9.3 3.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|294495036|ref|YP_003541529.1| - 2.7 8.2 9.0 3.5 7.8 1.0 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|294495037|ref|YP_003541530.1| - 1.1e-66 224.9 0.7 1.5e-66 224.4 0.7 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|294495037|ref|YP_003541530.1| - 6.2e-31 106.7 0.2 1.2e-30 105.8 0.2 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|294495037|ref|YP_003541530.1| - 1.9e-08 34.2 0.1 3.6e-08 33.3 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|294495038|ref|YP_003541531.1| - 6.7e-27 94.2 0.1 1.1e-26 93.5 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HhH-GPD PF00730.25 gi|294495039|ref|YP_003541532.1| - 1.1e-21 77.3 0.0 1.4e-21 77.0 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|294495039|ref|YP_003541532.1| - 1.8e-06 27.5 0.2 5.1e-06 26.1 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|294495039|ref|YP_003541532.1| - 1.5e-05 25.2 2.5 2.5e-05 24.5 2.5 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|294495039|ref|YP_003541532.1| - 0.026 15.1 0.1 1.7 9.3 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain IMS PF00817.20 gi|294495040|ref|YP_003541533.1| - 4e-42 143.7 0.1 6.2e-42 143.1 0.1 1.3 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 gi|294495040|ref|YP_003541533.1| - 2e-09 38.2 0.5 5.6e-09 36.7 0.6 1.7 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|294495040|ref|YP_003541533.1| - 0.0041 17.4 0.2 0.012 15.9 0.0 1.9 2 0 0 2 2 2 1 IMS family HHH motif DUF1805 PF08827.11 gi|294495040|ref|YP_003541533.1| - 0.0049 17.2 0.0 0.33 11.3 0.0 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF1805) Cdd1 PF11731.8 gi|294495040|ref|YP_003541533.1| - 0.052 13.8 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|294495040|ref|YP_003541533.1| - 0.17 11.8 0.2 0.45 10.4 0.1 1.8 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda DNase-RNase PF02577.14 gi|294495041|ref|YP_003541534.1| - 7.8e-40 135.5 0.1 8.8e-40 135.3 0.1 1.0 1 0 0 1 1 1 1 Bifunctional nuclease Peptidase_M23 PF01551.22 gi|294495042|ref|YP_003541535.1| - 5.1e-12 45.8 0.1 1.1e-11 44.8 0.1 1.5 1 1 0 1 1 1 1 Peptidase family M23 Hydantoinase_B PF02538.14 gi|294495043|ref|YP_003541536.1| - 5.1e-205 681.8 0.0 1.7e-204 680.0 0.1 1.8 2 0 0 2 2 2 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 gi|294495043|ref|YP_003541536.1| - 8.1e-115 383.1 0.0 2.1e-114 381.7 0.0 1.8 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|294495043|ref|YP_003541536.1| - 2.5e-63 213.0 0.2 2.2e-61 206.7 0.0 3.0 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region TACC_C PF05010.14 gi|294495043|ref|YP_003541536.1| - 0.023 14.5 0.3 0.059 13.2 0.3 1.6 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF3231 PF11553.8 gi|294495043|ref|YP_003541536.1| - 0.088 12.4 0.4 0.21 11.2 0.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) PAP2 PF01569.21 gi|294495044|ref|YP_003541537.1| - 4.6e-16 58.8 13.5 4.6e-16 58.8 13.5 2.2 1 1 1 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|294495044|ref|YP_003541537.1| - 6.5e-11 42.3 15.7 3.5e-09 36.6 15.7 2.0 1 1 0 1 1 1 1 PAP2 superfamily DUF212 PF02681.14 gi|294495044|ref|YP_003541537.1| - 0.00046 20.3 2.3 0.019 15.1 0.5 2.1 1 1 1 2 2 2 2 Divergent PAP2 family PAP2_C PF14360.6 gi|294495044|ref|YP_003541537.1| - 0.00065 20.2 0.9 0.00065 20.2 0.9 2.1 2 1 0 2 2 2 1 PAP2 superfamily C-terminal Bax1-I PF01027.20 gi|294495044|ref|YP_003541537.1| - 0.21 11.4 17.4 0.32 10.8 12.2 2.0 1 1 1 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 GATase_7 PF13537.6 gi|294495045|ref|YP_003541538.1| - 1.6e-24 86.1 0.0 2.8e-24 85.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|294495045|ref|YP_003541538.1| - 4.6e-23 81.9 0.0 1e-22 80.8 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|294495045|ref|YP_003541538.1| - 4.6e-09 35.6 0.0 2.5e-07 29.9 0.0 2.1 2 0 0 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|294495045|ref|YP_003541538.1| - 0.00028 20.4 0.1 0.00047 19.7 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain LSM PF01423.22 gi|294495046|ref|YP_003541539.1| - 3.1e-23 81.2 0.4 3.4e-23 81.1 0.4 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|294495046|ref|YP_003541539.1| - 0.034 14.3 0.0 0.034 14.3 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain Phos_pyr_kin PF08543.12 gi|294495047|ref|YP_003541540.1| - 1.9e-78 263.2 0.3 2.6e-78 262.8 0.3 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|294495047|ref|YP_003541540.1| - 9.8e-63 210.7 0.0 1.7e-62 209.9 0.0 1.4 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|294495047|ref|YP_003541540.1| - 1.2e-09 38.0 0.1 2e-09 37.2 0.1 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Lactamase_B PF00753.27 gi|294495047|ref|YP_003541540.1| - 0.06 13.4 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily MS_channel PF00924.18 gi|294495048|ref|YP_003541541.1| - 2.5e-20 72.9 2.6 2.5e-20 72.9 2.6 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel Scm3 PF10384.9 gi|294495048|ref|YP_003541541.1| - 0.08 12.7 0.1 1.1 9.0 0.0 2.4 2 0 0 2 2 2 0 Centromere protein Scm3 FliT PF05400.13 gi|294495048|ref|YP_003541541.1| - 0.087 13.6 0.9 0.14 13.0 0.2 1.7 2 0 0 2 2 2 0 Flagellar protein FliT Allexi_40kDa PF05549.11 gi|294495048|ref|YP_003541541.1| - 0.12 11.9 0.8 0.23 11.0 0.8 1.4 1 0 0 1 1 1 0 Allexivirus 40kDa protein EmrE PF13536.6 gi|294495048|ref|YP_003541541.1| - 0.13 11.8 7.0 0.2 11.2 7.0 1.2 1 0 0 1 1 1 0 Putative multidrug resistance efflux transporter DUF347 PF03988.12 gi|294495048|ref|YP_003541541.1| - 1.5 9.1 5.0 5.4 7.3 1.0 2.7 2 0 0 2 2 2 0 Repeat of Unknown Function (DUF347) Pex24p PF06398.11 gi|294495048|ref|YP_003541541.1| - 6.8 5.6 12.0 1.4 7.8 0.3 2.8 3 0 0 3 3 3 0 Integral peroxisomal membrane peroxin MarC PF01914.17 gi|294495049|ref|YP_003541542.1| - 1.1e-60 204.6 9.8 1.2e-60 204.4 9.8 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein Phage_holin_3_1 PF05106.12 gi|294495049|ref|YP_003541542.1| - 0.046 14.1 0.9 0.046 14.1 0.9 2.3 2 1 1 3 3 3 0 Phage holin family (Lysis protein S) Usp PF00582.26 gi|294495050|ref|YP_003541543.1| - 3.8e-28 98.8 0.1 1.5e-26 93.6 0.1 2.0 1 1 0 1 1 1 1 Universal stress protein family ABC_sub_bind PF04392.12 gi|294495050|ref|YP_003541543.1| - 0.085 12.1 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 ABC transporter substrate binding protein 5-FTHF_cyc-lig PF01812.20 gi|294495050|ref|YP_003541543.1| - 0.1 12.4 0.0 0.13 12.1 0.0 1.2 1 1 0 1 1 1 0 5-formyltetrahydrofolate cyclo-ligase family tRNA-synt_1 PF00133.22 gi|294495051|ref|YP_003541544.1| - 7.2e-128 427.4 5.7 1.2e-126 423.5 5.7 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|294495051|ref|YP_003541544.1| - 3.4e-40 137.5 0.3 6.2e-40 136.6 0.3 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|294495051|ref|YP_003541544.1| - 6.2e-22 77.9 1.2 1.5e-11 43.7 0.0 3.4 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|294495051|ref|YP_003541544.1| - 9.8e-05 21.8 0.0 0.023 14.1 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|294495051|ref|YP_003541544.1| - 9.9e-05 21.9 0.1 0.0017 17.9 0.0 2.5 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|294495051|ref|YP_003541544.1| - 0.011 14.7 0.0 0.3 9.9 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) BLM10_mid PF16507.5 gi|294495051|ref|YP_003541544.1| - 0.11 11.1 0.0 0.18 10.4 0.0 1.2 1 0 0 1 1 1 0 Proteasome-substrate-size regulator, mid region DZR PF12773.7 gi|294495051|ref|YP_003541544.1| - 1.4 9.0 4.3 8 6.6 0.4 3.1 3 0 0 3 3 3 0 Double zinc ribbon PRA1 PF03208.19 gi|294495052|ref|YP_003541545.1| - 0.11 12.1 4.5 0.12 12.0 4.5 1.1 1 0 0 1 1 1 0 PRA1 family protein Response_reg PF00072.24 gi|294495053|ref|YP_003541546.1| - 2.1e-29 101.9 2.4 8.9e-29 99.9 2.7 2.0 2 0 0 2 2 2 1 Response regulator receiver domain Baculo_LEF-10 PF07206.11 gi|294495053|ref|YP_003541546.1| - 0.081 13.1 0.1 0.27 11.4 0.0 1.8 2 0 0 2 2 2 0 Baculovirus late expression factor 10 (LEF-10) tRNA-synt_2c PF01411.19 gi|294495054|ref|YP_003541547.1| - 3e-130 435.3 0.0 4.6e-130 434.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|294495054|ref|YP_003541547.1| - 1.8e-21 77.0 3.6 1.8e-21 77.0 3.6 2.2 2 0 0 2 2 2 1 DHHA1 domain tRNA_SAD PF07973.14 gi|294495054|ref|YP_003541547.1| - 1.4e-11 44.3 0.8 3.1e-11 43.2 0.8 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain KAR9 PF08580.10 gi|294495054|ref|YP_003541547.1| - 0.00097 17.8 0.7 0.0015 17.2 0.7 1.2 1 0 0 1 1 1 1 Yeast cortical protein KAR9 DUF179 PF02622.15 gi|294495054|ref|YP_003541547.1| - 0.0087 16.0 0.0 2.3 8.2 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized ACR, COG1678 DUF3232 PF11554.8 gi|294495054|ref|YP_003541547.1| - 0.011 16.1 1.3 0.15 12.4 0.3 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF3232) RPW8 PF05659.11 gi|294495054|ref|YP_003541547.1| - 0.084 12.6 1.7 6.4 6.5 0.1 2.6 2 0 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 tRNA-synt_2e PF02091.15 gi|294495054|ref|YP_003541547.1| - 0.089 12.0 0.0 0.2 10.9 0.0 1.5 1 0 0 1 1 1 0 Glycyl-tRNA synthetase alpha subunit BCCT PF02028.17 gi|294495056|ref|YP_003541549.1| - 3.8e-189 629.2 45.7 4.3e-189 629.0 45.7 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter SurE PF01975.17 gi|294495058|ref|YP_003541551.1| - 1.8e-54 184.5 0.0 2.2e-54 184.2 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE SIL1 PF16782.5 gi|294495058|ref|YP_003541551.1| - 0.11 11.7 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Nucleotide exchange factor SIL1 Prominin PF05478.11 gi|294495060|ref|YP_003541553.1| - 0.0003 18.9 4.3 0.0003 18.9 4.3 2.3 1 1 0 2 2 2 1 Prominin Atg14 PF10186.9 gi|294495060|ref|YP_003541553.1| - 0.00053 19.2 1.0 0.00053 19.2 1.0 2.3 2 0 0 2 2 2 1 Vacuolar sorting 38 and autophagy-related subunit 14 AAA_13 PF13166.6 gi|294495060|ref|YP_003541553.1| - 0.00061 18.6 6.9 0.00061 18.6 6.9 2.8 1 1 2 3 3 3 1 AAA domain Golgin_A5 PF09787.9 gi|294495060|ref|YP_003541553.1| - 0.00076 19.0 4.1 0.00076 19.0 4.1 2.5 1 1 1 2 2 2 1 Golgin subfamily A member 5 Baculo_PEP_C PF04513.12 gi|294495060|ref|YP_003541553.1| - 0.0016 18.5 15.2 0.15 12.1 0.3 4.4 3 1 1 5 5 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus GrpE PF01025.19 gi|294495060|ref|YP_003541553.1| - 0.0077 15.9 3.5 0.0077 15.9 3.5 4.0 2 1 1 3 3 2 1 GrpE DUF489 PF04356.12 gi|294495060|ref|YP_003541553.1| - 0.057 13.4 11.2 0.88 9.5 3.7 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF489) Wtap PF17098.5 gi|294495060|ref|YP_003541553.1| - 0.082 12.8 0.3 0.082 12.8 0.3 3.9 2 1 0 3 3 2 0 WTAP/Mum2p family PilJ PF13675.6 gi|294495060|ref|YP_003541553.1| - 0.11 12.6 2.5 1.3 9.1 0.1 2.6 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Laminin_II PF06009.12 gi|294495060|ref|YP_003541553.1| - 0.2 11.7 21.6 0.18 11.8 0.9 3.9 3 1 0 4 4 4 0 Laminin Domain II Nas2_N PF18265.1 gi|294495060|ref|YP_003541553.1| - 0.24 11.3 8.9 0.13 12.1 0.4 4.1 2 2 2 4 4 4 0 Nas2 N_terminal domain USP8_interact PF08941.10 gi|294495060|ref|YP_003541553.1| - 0.26 11.1 5.7 1.6 8.5 0.7 2.7 2 0 0 2 2 2 0 USP8 interacting NPV_P10 PF05531.12 gi|294495060|ref|YP_003541553.1| - 0.3 11.6 18.8 7.4 7.1 4.5 5.1 2 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF4446 PF14584.6 gi|294495060|ref|YP_003541553.1| - 0.42 10.6 16.0 0.31 11.0 0.5 3.7 3 2 1 4 4 4 0 Protein of unknown function (DUF4446) FlaC_arch PF05377.11 gi|294495060|ref|YP_003541553.1| - 0.51 10.8 18.9 0.42 11.0 0.8 5.3 2 1 3 5 5 5 0 Flagella accessory protein C (FlaC) Helicase_IV_N PF12462.8 gi|294495060|ref|YP_003541553.1| - 0.51 10.3 4.9 17 5.3 0.1 3.0 2 1 0 3 3 3 0 DNA helicase IV / RNA helicase N terminal UPF0242 PF06785.11 gi|294495060|ref|YP_003541553.1| - 0.8 9.8 26.2 0.47 10.5 2.6 2.7 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus Glutaredoxin2_C PF04399.13 gi|294495060|ref|YP_003541553.1| - 1.2 9.0 4.5 0.68 9.8 0.9 2.5 2 1 1 3 3 2 0 Glutaredoxin 2, C terminal domain PCRF PF03462.18 gi|294495060|ref|YP_003541553.1| - 1.4 8.7 21.0 0.93 9.3 2.7 3.4 2 1 2 4 4 4 0 PCRF domain DHR10 PF18595.1 gi|294495060|ref|YP_003541553.1| - 1.7 8.7 24.6 1.7 8.7 2.1 3.9 3 1 1 4 4 4 0 Designed helical repeat protein 10 domain FapA PF03961.13 gi|294495060|ref|YP_003541553.1| - 1.8 7.0 21.3 0.66 8.5 2.9 2.6 2 1 0 2 2 2 0 Flagellar Assembly Protein A DUF2203 PF09969.9 gi|294495060|ref|YP_003541553.1| - 2 9.1 10.7 3.6 8.3 1.3 3.3 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) cwf21 PF08312.12 gi|294495060|ref|YP_003541553.1| - 2.2 8.5 11.6 0.64 10.2 1.8 3.1 3 0 0 3 3 2 0 cwf21 domain Uds1 PF15456.6 gi|294495060|ref|YP_003541553.1| - 2.7 8.2 15.4 9.3 6.4 6.1 2.9 2 1 1 3 3 3 0 Up-regulated During Septation ApoO PF09769.9 gi|294495060|ref|YP_003541553.1| - 2.9 7.9 5.1 45 4.0 0.0 4.2 4 1 1 5 5 5 0 Apolipoprotein O Snapin_Pallidin PF14712.6 gi|294495060|ref|YP_003541553.1| - 2.9 8.4 21.0 0.098 13.1 2.2 3.6 3 2 1 4 4 3 0 Snapin/Pallidin WXG100 PF06013.12 gi|294495060|ref|YP_003541553.1| - 3 8.1 6.1 41 4.5 0.4 4.3 3 2 0 3 3 3 0 Proteins of 100 residues with WXG Cauli_DNA-bind PF03310.13 gi|294495060|ref|YP_003541553.1| - 3.8 7.6 9.3 1.5 8.9 0.1 3.6 3 0 0 3 3 3 0 Caulimovirus DNA-binding protein HrpB7 PF09486.10 gi|294495060|ref|YP_003541553.1| - 6 7.2 9.4 13 6.2 0.7 3.4 2 1 0 3 3 3 0 Bacterial type III secretion protein (HrpB7) Fib_alpha PF08702.10 gi|294495060|ref|YP_003541553.1| - 6 7.0 23.8 0.34 11.1 1.4 4.0 2 1 1 4 4 4 0 Fibrinogen alpha/beta chain family Lip_prot_lig_C PF10437.9 gi|294495060|ref|YP_003541553.1| - 6.7 6.8 6.5 7.9 6.5 0.3 3.7 3 1 1 5 5 4 0 Bacterial lipoate protein ligase C-terminus Spore_III_AB PF09548.10 gi|294495060|ref|YP_003541553.1| - 7.6 6.6 10.6 25 4.9 7.0 3.0 1 1 0 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) Exonuc_VII_L PF02601.15 gi|294495060|ref|YP_003541553.1| - 9 5.8 18.0 2.9e+03 -2.5 17.4 2.5 1 1 0 1 1 1 0 Exonuclease VII, large subunit Tropomyosin_1 PF12718.7 gi|294495060|ref|YP_003541553.1| - 9.1 6.4 26.6 0.17 12.0 5.2 3.2 2 2 1 3 3 2 0 Tropomyosin like Radical_SAM PF04055.21 gi|294495061|ref|YP_003541554.1| - 1.7e-32 113.1 0.1 1.5e-31 110.0 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|294495061|ref|YP_003541554.1| - 2.5e-19 69.5 0.5 6e-19 68.2 0.1 1.7 2 0 0 2 2 2 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|294495061|ref|YP_003541554.1| - 3e-08 34.0 0.0 9.5e-08 32.4 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|294495061|ref|YP_003541554.1| - 3.8e-07 30.2 0.0 9.3e-07 29.0 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain HMGL-like PF00682.19 gi|294495061|ref|YP_003541554.1| - 0.0084 15.7 0.2 0.22 11.0 0.2 2.1 2 0 0 2 2 2 1 HMGL-like HIPIP PF01355.17 gi|294495061|ref|YP_003541554.1| - 0.016 15.6 0.1 0.042 14.2 0.0 1.7 2 0 0 2 2 2 0 High potential iron-sulfur protein CytoC_RC PF02276.18 gi|294495061|ref|YP_003541554.1| - 0.09 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Photosynthetic reaction centre cytochrome C subunit HasA PF06438.12 gi|294495061|ref|YP_003541554.1| - 0.13 11.9 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Heme-binding protein A (HasA) K-box PF01486.17 gi|294495061|ref|YP_003541554.1| - 0.17 12.1 2.6 1.3 9.3 0.2 2.7 2 1 1 3 3 3 0 K-box region GATase_3 PF07685.14 gi|294495062|ref|YP_003541555.1| - 7e-35 120.4 0.0 1e-34 119.8 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|294495062|ref|YP_003541555.1| - 8e-22 78.0 0.2 5.8e-13 49.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|294495062|ref|YP_003541555.1| - 2.3e-18 66.5 0.0 3.8e-18 65.8 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.11 gi|294495062|ref|YP_003541555.1| - 0.012 14.9 0.1 0.021 14.1 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain ParA PF10609.9 gi|294495062|ref|YP_003541555.1| - 0.051 13.0 0.8 0.085 12.3 0.8 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|294495062|ref|YP_003541555.1| - 0.086 12.8 0.5 0.16 11.9 0.5 1.3 1 0 0 1 1 1 0 AAA domain MipZ PF09140.11 gi|294495062|ref|YP_003541555.1| - 0.09 12.0 0.2 0.14 11.4 0.2 1.2 1 0 0 1 1 1 0 ATPase MipZ FTHFS PF01268.19 gi|294495062|ref|YP_003541555.1| - 0.18 10.0 0.2 0.27 9.4 0.2 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase ThiI PF02568.14 gi|294495063|ref|YP_003541556.1| - 6.5e-06 25.9 0.0 9.1e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) NAD_synthase PF02540.17 gi|294495063|ref|YP_003541556.1| - 6.6e-05 22.1 0.0 9.1e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|294495063|ref|YP_003541556.1| - 0.001 18.8 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 gi|294495063|ref|YP_003541556.1| - 0.025 14.3 0.1 0.61 9.8 0.1 2.5 1 1 0 1 1 1 0 PP-loop family QueH PF02677.14 gi|294495063|ref|YP_003541556.1| - 0.1 12.7 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Epoxyqueuosine reductase QueH QueC PF06508.13 gi|294495063|ref|YP_003541556.1| - 0.13 11.8 0.0 0.96 8.9 0.0 2.2 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC Latrotoxin_C PF15658.6 gi|294495063|ref|YP_003541556.1| - 0.13 12.1 0.0 0.37 10.5 0.0 1.8 2 0 0 2 2 2 0 Latrotoxin C-terminal domain ThiF PF00899.21 gi|294495064|ref|YP_003541557.1| - 6.2e-70 235.3 0.0 7.1e-70 235.1 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|294495064|ref|YP_003541557.1| - 1.5e-05 25.3 0.1 3.9e-05 23.9 0.1 1.6 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|294495064|ref|YP_003541557.1| - 0.06 13.8 0.0 0.1 13.0 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|294495064|ref|YP_003541557.1| - 0.11 11.9 0.1 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NifU_N PF01592.16 gi|294495065|ref|YP_003541558.1| - 8e-51 171.5 0.2 9e-51 171.4 0.2 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain CO_deh_flav_C PF03450.17 gi|294495065|ref|YP_003541558.1| - 0.015 15.5 0.1 0.022 14.9 0.1 1.2 1 0 0 1 1 1 0 CO dehydrogenase flavoprotein C-terminal domain Aminotran_5 PF00266.19 gi|294495066|ref|YP_003541559.1| - 1.2e-85 287.7 0.1 1.6e-85 287.3 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|294495066|ref|YP_003541559.1| - 8.9e-07 28.5 0.2 2.7e-06 26.9 0.2 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|294495066|ref|YP_003541559.1| - 0.00024 20.5 0.1 0.00047 19.6 0.1 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|294495066|ref|YP_003541559.1| - 0.00035 19.8 0.0 0.00088 18.5 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II Pyridoxal_deC PF00282.19 gi|294495066|ref|YP_003541559.1| - 0.054 12.2 0.0 0.076 11.7 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain COX6A PF02046.15 gi|294495066|ref|YP_003541559.1| - 0.11 12.9 0.0 0.23 11.9 0.0 1.4 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIa HTH_3 PF01381.22 gi|294495067|ref|YP_003541560.1| - 0.00046 20.2 0.0 0.00073 19.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|294495067|ref|YP_003541560.1| - 0.00055 19.7 0.0 0.001 18.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_31 PF13560.6 gi|294495067|ref|YP_003541560.1| - 0.002 18.4 0.0 0.0034 17.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|294495067|ref|YP_003541560.1| - 0.0025 17.7 0.0 0.0053 16.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_37 PF13744.6 gi|294495067|ref|YP_003541560.1| - 0.0035 17.3 0.0 0.0083 16.1 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|294495067|ref|YP_003541560.1| - 0.0037 17.4 0.0 0.009 16.1 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|294495067|ref|YP_003541560.1| - 0.0038 16.7 0.0 0.0068 16.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|294495067|ref|YP_003541560.1| - 0.0053 16.4 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 DUF2811 PF10929.8 gi|294495067|ref|YP_003541560.1| - 0.0064 16.7 0.0 0.025 14.9 0.0 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF2811) Cpn60_TCP1 PF00118.24 gi|294495067|ref|YP_003541560.1| - 0.014 14.1 0.0 0.018 13.7 0.0 1.1 1 0 0 1 1 1 0 TCP-1/cpn60 chaperonin family HTH_Crp_2 PF13545.6 gi|294495067|ref|YP_003541560.1| - 0.016 15.2 0.0 0.023 14.7 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PgaD PF13994.6 gi|294495067|ref|YP_003541560.1| - 0.021 14.9 0.0 0.026 14.6 0.0 1.1 1 0 0 1 1 1 0 PgaD-like protein HTH_5 PF01022.20 gi|294495067|ref|YP_003541560.1| - 0.022 14.6 0.0 0.44 10.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_7 PF02796.15 gi|294495067|ref|YP_003541560.1| - 0.036 14.1 0.0 0.056 13.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase P22_Cro PF14549.6 gi|294495067|ref|YP_003541560.1| - 0.037 13.9 0.0 0.075 12.9 0.0 1.6 1 1 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_IclR PF09339.10 gi|294495067|ref|YP_003541560.1| - 0.041 13.7 0.0 0.065 13.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|294495067|ref|YP_003541560.1| - 0.042 13.3 0.0 0.074 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_4 PF13613.6 gi|294495067|ref|YP_003541560.1| - 0.067 12.9 0.0 0.27 11.0 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease Cro PF09048.10 gi|294495067|ref|YP_003541560.1| - 0.069 13.2 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Cro Sigma70_r4 PF04545.16 gi|294495067|ref|YP_003541560.1| - 0.079 12.5 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 YdaS_antitoxin PF15943.5 gi|294495067|ref|YP_003541560.1| - 0.081 12.8 0.3 0.17 11.7 0.0 1.8 2 1 0 2 2 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_40 PF14493.6 gi|294495067|ref|YP_003541560.1| - 0.085 13.3 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TnsD PF15978.5 gi|294495067|ref|YP_003541560.1| - 0.12 11.3 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_Tnp_1 PF01527.20 gi|294495067|ref|YP_003541560.1| - 0.13 12.6 0.0 0.24 11.8 0.0 1.5 1 1 0 1 1 1 0 Transposase CENP-B_N PF04218.13 gi|294495067|ref|YP_003541560.1| - 0.16 11.6 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_20 PF12840.7 gi|294495067|ref|YP_003541560.1| - 0.16 12.0 0.1 8.1 6.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain SepSecS PF05889.13 gi|294495068|ref|YP_003541561.1| - 4.6e-22 78.2 0.0 8e-22 77.5 0.0 1.4 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|294495068|ref|YP_003541561.1| - 3.7e-17 62.3 0.0 5.2e-17 61.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|294495068|ref|YP_003541561.1| - 2.3e-05 23.8 0.0 3.4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|294495068|ref|YP_003541561.1| - 4.8e-05 22.7 0.0 0.00013 21.3 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|294495068|ref|YP_003541561.1| - 0.0017 17.7 0.0 0.0026 17.2 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|294495068|ref|YP_003541561.1| - 0.0054 15.3 0.0 0.011 14.3 0.0 1.5 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Cys_Met_Meta_PP PF01053.20 gi|294495069|ref|YP_003541562.1| - 6.3e-142 472.6 0.0 7.1e-142 472.4 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|294495069|ref|YP_003541562.1| - 1.2e-09 38.0 0.2 1.7e-09 37.4 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|294495069|ref|YP_003541562.1| - 1.3e-05 24.4 0.1 2e-05 23.7 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|294495069|ref|YP_003541562.1| - 0.00099 18.4 0.0 0.0016 17.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|294495069|ref|YP_003541562.1| - 0.003 16.9 0.0 0.0074 15.6 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Asparaginase_C PF17763.1 gi|294495069|ref|YP_003541562.1| - 0.062 13.5 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Glutaminase/Asparaginase C-terminal domain SepSecS PF05889.13 gi|294495069|ref|YP_003541562.1| - 0.12 11.0 0.0 0.19 10.4 0.0 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Abhydrolase_1 PF00561.20 gi|294495070|ref|YP_003541563.1| - 7.1e-35 120.9 0.2 9.6e-35 120.4 0.2 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold CBS PF00571.28 gi|294495070|ref|YP_003541563.1| - 4.8e-22 78.2 0.4 6.1e-11 42.6 0.0 2.4 2 0 0 2 2 2 2 CBS domain Hydrolase_4 PF12146.8 gi|294495070|ref|YP_003541563.1| - 7.8e-05 22.1 0.0 0.0023 17.3 0.0 2.2 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|294495070|ref|YP_003541563.1| - 0.02 15.5 0.0 0.037 14.6 0.0 1.5 1 0 0 1 1 1 0 Alpha/beta hydrolase family Peptidase_S29 PF02907.15 gi|294495070|ref|YP_003541563.1| - 0.062 13.0 0.1 0.63 9.8 0.0 2.1 1 1 1 2 2 2 0 Hepatitis C virus NS3 protease DNA_primase_lrg PF04104.14 gi|294495071|ref|YP_003541564.1| - 7.3e-35 120.7 0.9 3.4e-34 118.5 0.9 1.8 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DUF2666 PF10869.8 gi|294495071|ref|YP_003541564.1| - 0.024 14.8 0.0 0.043 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2666) Mut7-C PF01927.16 gi|294495071|ref|YP_003541564.1| - 0.077 13.1 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Mut7-C RNAse domain PCNA_N PF00705.18 gi|294495072|ref|YP_003541565.1| - 4e-16 58.9 0.3 2.1e-15 56.6 0.2 1.9 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|294495072|ref|YP_003541565.1| - 2.8e-09 37.2 0.0 1.2e-08 35.2 0.0 2.0 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|294495072|ref|YP_003541565.1| - 2.6e-05 23.8 0.0 4.6e-05 23.0 0.0 1.5 1 1 0 1 1 1 1 Rad9 TFIIS_C PF01096.18 gi|294495073|ref|YP_003541566.1| - 1.7e-19 69.4 17.8 2.7e-19 68.7 6.5 3.2 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|294495073|ref|YP_003541566.1| - 3.1e-11 43.0 19.0 6.6e-10 38.7 4.9 3.2 3 0 0 3 3 3 2 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|294495073|ref|YP_003541566.1| - 1.9e-05 23.9 1.1 1.9e-05 23.9 1.1 2.9 3 0 0 3 3 3 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|294495073|ref|YP_003541566.1| - 4.9e-05 23.2 10.9 0.00095 19.1 1.0 2.7 2 1 0 2 2 2 2 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|294495073|ref|YP_003541566.1| - 0.0011 18.8 10.0 0.12 12.4 2.5 2.4 1 1 1 2 2 2 2 Putative transposase DNA-binding domain TackOD1 PF18551.1 gi|294495073|ref|YP_003541566.1| - 0.0019 17.9 6.2 0.015 15.0 3.0 2.3 1 1 1 2 2 2 1 Thaumarchaeal output domain 1 PhnA_Zn_Ribbon PF08274.12 gi|294495073|ref|YP_003541566.1| - 0.0066 16.4 5.1 0.28 11.2 0.1 3.2 3 1 0 3 3 3 1 PhnA Zinc-Ribbon DUF2387 PF09526.10 gi|294495073|ref|YP_003541566.1| - 0.011 15.9 8.8 0.52 10.5 0.9 2.4 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) HypA PF01155.19 gi|294495073|ref|YP_003541566.1| - 0.039 14.0 0.7 0.039 14.0 0.7 2.9 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|294495073|ref|YP_003541566.1| - 0.05 13.1 14.3 0.22 11.1 2.2 3.0 3 1 0 3 3 2 0 TFIIB zinc-binding Ogr_Delta PF04606.12 gi|294495073|ref|YP_003541566.1| - 0.055 13.4 1.8 0.055 13.4 1.8 2.8 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger zinc_ribbon_4 PF13717.6 gi|294495073|ref|YP_003541566.1| - 0.077 12.9 15.6 1.4 8.9 0.5 4.2 3 1 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|294495073|ref|YP_003541566.1| - 0.096 12.7 11.7 0.1 12.6 1.2 2.8 2 1 1 3 3 3 0 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|294495073|ref|YP_003541566.1| - 0.18 11.8 10.9 0.12 12.4 1.0 2.7 2 1 1 3 3 3 0 zinc-ribbons zf-ZPR1 PF03367.13 gi|294495073|ref|YP_003541566.1| - 0.2 11.5 6.8 0.33 10.8 0.1 2.5 3 0 0 3 3 3 0 ZPR1 zinc-finger domain Nudix_N_2 PF14803.6 gi|294495073|ref|YP_003541566.1| - 0.3 11.0 8.3 2.7 8.0 0.4 3.8 3 1 0 3 3 3 0 Nudix N-terminal DUF3797 PF12677.7 gi|294495073|ref|YP_003541566.1| - 0.44 10.5 13.1 0.18 11.7 3.7 3.4 2 2 1 3 3 3 0 Domain of unknown function (DUF3797) zinc_ribbon_2 PF13240.6 gi|294495073|ref|YP_003541566.1| - 0.56 10.0 19.4 3 7.7 0.2 4.2 4 0 0 4 4 4 0 zinc-ribbon domain zf-ACC PF17848.1 gi|294495073|ref|YP_003541566.1| - 0.6 10.2 17.4 2.4 8.3 0.2 4.3 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zf-RING_7 PF02591.15 gi|294495073|ref|YP_003541566.1| - 1.4 9.2 0.1 1.4 9.2 0.1 3.0 4 0 0 4 4 3 0 C4-type zinc ribbon domain zf-RING_4 PF14570.6 gi|294495073|ref|YP_003541566.1| - 1.9 8.3 11.1 9.6 6.1 0.1 3.5 3 1 0 3 3 3 0 RING/Ubox like zinc-binding domain zinc_ribbon_9 PF14369.6 gi|294495073|ref|YP_003541566.1| - 2.1 8.7 0.1 2.1 8.7 0.1 3.3 3 1 0 3 3 3 0 zinc-ribbon RPA_interact_C PF14768.6 gi|294495073|ref|YP_003541566.1| - 2.3 8.8 6.6 10 6.8 6.6 2.3 1 1 0 1 1 1 0 Replication protein A interacting C-terminal C1_1 PF00130.22 gi|294495073|ref|YP_003541566.1| - 2.5 8.1 9.9 4.2 7.3 1.7 2.7 2 1 1 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) GFA PF04828.14 gi|294495073|ref|YP_003541566.1| - 2.9 8.3 9.4 1.1 9.6 0.3 2.8 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme CxC3 PF18804.1 gi|294495073|ref|YP_003541566.1| - 3.9 7.3 7.3 0.72 9.7 0.6 2.4 1 1 1 3 3 3 0 CxC3 like cysteine cluster associated with KDZ transposases A2L_zn_ribbon PF08792.10 gi|294495073|ref|YP_003541566.1| - 4.3 7.2 15.6 7.5 6.4 0.1 4.0 3 1 1 4 4 4 0 A2L zinc ribbon domain UPF0547 PF10571.9 gi|294495073|ref|YP_003541566.1| - 4.5 7.5 15.4 6.9 6.8 0.1 4.0 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Rubredoxin_2 PF18073.1 gi|294495073|ref|YP_003541566.1| - 6.5 6.6 19.0 4.7 7.0 0.4 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain DUF2072 PF09845.9 gi|294495073|ref|YP_003541566.1| - 6.8 7.0 9.3 1.5 9.1 0.7 2.7 1 1 2 3 3 3 0 Zn-ribbon containing protein DNA_RNApol_7kD PF03604.13 gi|294495073|ref|YP_003541566.1| - 7.3 6.4 11.1 7.2 6.4 2.6 3.2 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit NUDIX PF00293.28 gi|294495074|ref|YP_003541567.1| - 1.8e-18 66.8 0.0 2.3e-18 66.5 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|294495074|ref|YP_003541567.1| - 0.0015 18.1 0.0 0.0068 15.9 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4916) PS_Dcarbxylase PF02666.15 gi|294495076|ref|YP_003541569.1| - 5.8e-29 101.1 0.8 1.9e-24 86.4 0.1 2.1 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase RnfC_N PF13375.6 gi|294495076|ref|YP_003541569.1| - 8.1e-07 28.9 0.1 0.002 18.1 0.0 3.1 2 1 1 3 3 3 2 RnfC Barrel sandwich hybrid domain Apocytochr_F_C PF01333.19 gi|294495076|ref|YP_003541569.1| - 0.017 15.1 0.0 0.91 9.6 0.0 2.5 2 1 1 3 3 3 0 Apocytochrome F, C-terminal Peptidase_M23 PF01551.22 gi|294495076|ref|YP_003541569.1| - 0.02 15.1 0.1 2.5 8.4 0.0 3.1 1 1 1 2 2 2 0 Peptidase family M23 PsbT PF01405.17 gi|294495076|ref|YP_003541569.1| - 0.035 13.9 2.8 0.035 13.9 2.8 1.7 2 0 0 2 2 2 0 Photosystem II reaction centre T protein PTS_EIIA_1 PF00358.20 gi|294495076|ref|YP_003541569.1| - 0.051 13.3 0.1 11 5.8 0.0 3.1 1 1 2 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CDP-OH_P_transf PF01066.21 gi|294495077|ref|YP_003541570.1| - 5.6e-13 49.5 1.3 5.6e-13 49.5 1.3 3.6 4 0 0 4 4 4 1 CDP-alcohol phosphatidyltransferase SRTM1 PF15872.5 gi|294495077|ref|YP_003541570.1| - 0.12 12.5 0.1 0.12 12.5 0.1 2.4 2 0 0 2 2 2 0 Serine-rich and transmembrane domain-containing protein 1 Peptidase_A24 PF01478.18 gi|294495077|ref|YP_003541570.1| - 8.7 6.8 12.1 0.87 10.0 3.1 2.8 1 1 1 2 2 2 0 Type IV leader peptidase family AAA_2 PF07724.14 gi|294495078|ref|YP_003541571.1| - 2.4e-60 203.5 0.3 4.2e-56 189.7 0.0 3.2 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_lid_9 PF17871.1 gi|294495078|ref|YP_003541571.1| - 1.1e-35 121.7 4.8 1.1e-35 121.7 4.8 4.5 4 0 0 4 4 4 1 AAA lid domain Clp_N PF02861.20 gi|294495078|ref|YP_003541571.1| - 6e-26 90.3 1.1 7.6e-13 48.4 0.1 3.0 2 0 0 2 2 2 2 Clp amino terminal domain, pathogenicity island component AAA PF00004.29 gi|294495078|ref|YP_003541571.1| - 3.1e-25 89.1 1.7 9.4e-12 45.5 0.1 3.3 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) ClpB_D2-small PF10431.9 gi|294495078|ref|YP_003541571.1| - 3.8e-23 81.3 3.5 4.6e-23 81.1 0.8 2.8 2 0 0 2 2 1 1 C-terminal, D2-small domain, of ClpB protein AAA_5 PF07728.14 gi|294495078|ref|YP_003541571.1| - 1.2e-17 64.2 0.5 3.4e-12 46.5 0.0 4.2 4 0 0 4 4 3 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|294495078|ref|YP_003541571.1| - 5e-11 43.3 6.4 1.9e-05 25.1 0.0 4.5 4 2 1 6 6 4 2 AAA ATPase domain AAA_22 PF13401.6 gi|294495078|ref|YP_003541571.1| - 1.8e-08 34.8 0.3 0.0089 16.3 0.0 3.9 3 1 0 3 3 2 2 AAA domain Sigma54_activat PF00158.26 gi|294495078|ref|YP_003541571.1| - 5.2e-08 32.8 0.4 7.9e-05 22.4 0.0 2.8 3 0 0 3 3 2 2 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|294495078|ref|YP_003541571.1| - 1.1e-07 31.7 0.3 0.0082 15.9 0.0 3.2 3 0 0 3 3 3 2 IstB-like ATP binding protein TniB PF05621.11 gi|294495078|ref|YP_003541571.1| - 7e-07 28.8 0.0 0.00037 20.0 0.0 3.5 2 1 0 2 2 2 1 Bacterial TniB protein AAA_14 PF13173.6 gi|294495078|ref|YP_003541571.1| - 1.3e-06 28.5 0.0 0.025 14.6 0.0 3.1 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|294495078|ref|YP_003541571.1| - 2.1e-06 27.4 0.0 0.045 13.3 0.0 2.6 2 0 0 2 2 2 2 P-loop containing dynein motor region NACHT PF05729.12 gi|294495078|ref|YP_003541571.1| - 3.8e-06 26.9 0.0 0.017 15.0 0.0 2.9 3 0 0 3 3 2 2 NACHT domain Mg_chelatase PF01078.21 gi|294495078|ref|YP_003541571.1| - 5.1e-06 26.0 0.2 0.053 12.9 0.1 3.5 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|294495078|ref|YP_003541571.1| - 1e-05 25.6 7.9 0.44 10.4 0.0 4.7 3 2 1 4 4 3 3 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|294495078|ref|YP_003541571.1| - 1.7e-05 25.2 0.0 0.19 12.1 0.0 3.2 3 0 0 3 3 3 2 RNA helicase Roc PF08477.13 gi|294495078|ref|YP_003541571.1| - 2.3e-05 24.6 0.0 0.18 12.0 0.0 3.0 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase RsgA_GTPase PF03193.16 gi|294495078|ref|YP_003541571.1| - 6.5e-05 22.9 0.0 0.67 9.8 0.0 2.9 2 0 0 2 2 2 2 RsgA GTPase TsaE PF02367.17 gi|294495078|ref|YP_003541571.1| - 0.00049 20.1 0.1 1.2 9.1 0.0 3.0 3 0 0 3 3 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|294495078|ref|YP_003541571.1| - 0.00062 20.3 3.2 0.16 12.5 0.0 4.1 4 0 0 4 4 4 1 ABC transporter RuvB_N PF05496.12 gi|294495078|ref|YP_003541571.1| - 0.00069 19.4 2.6 0.12 12.2 0.0 3.9 3 1 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_24 PF13479.6 gi|294495078|ref|YP_003541571.1| - 0.00082 19.1 0.0 0.98 9.1 0.0 2.9 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|294495078|ref|YP_003541571.1| - 0.00093 18.5 0.0 0.056 12.7 0.0 2.9 2 0 0 2 2 2 1 Zeta toxin AAA_33 PF13671.6 gi|294495078|ref|YP_003541571.1| - 0.0015 18.7 0.0 0.28 11.3 0.0 2.9 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|294495078|ref|YP_003541571.1| - 0.0015 17.7 0.1 0.27 10.3 0.1 2.7 2 1 0 2 2 2 1 Protein of unknown function (DUF815) AAA_25 PF13481.6 gi|294495078|ref|YP_003541571.1| - 0.0022 17.6 0.9 0.29 10.7 0.0 3.2 2 1 1 3 3 3 1 AAA domain AAA_28 PF13521.6 gi|294495078|ref|YP_003541571.1| - 0.0024 18.1 0.1 2.1 8.6 0.0 3.6 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.6 gi|294495078|ref|YP_003541571.1| - 0.0037 17.0 0.0 1.3 8.7 0.0 3.2 2 1 0 2 2 2 1 AAA domain ResIII PF04851.15 gi|294495078|ref|YP_003541571.1| - 0.0046 17.0 4.2 1.1 9.2 0.0 4.1 4 1 1 5 5 4 1 Type III restriction enzyme, res subunit Torsin PF06309.11 gi|294495078|ref|YP_003541571.1| - 0.0086 16.2 0.0 0.03 14.4 0.0 1.9 2 0 0 2 2 1 1 Torsin PhoH PF02562.16 gi|294495078|ref|YP_003541571.1| - 0.0088 15.5 0.0 1.8 7.9 0.0 2.7 2 0 0 2 2 2 1 PhoH-like protein DNA_pol3_delta2 PF13177.6 gi|294495078|ref|YP_003541571.1| - 0.014 15.2 0.0 0.26 11.0 0.0 2.8 2 1 0 2 2 1 0 DNA polymerase III, delta subunit T2SSE PF00437.20 gi|294495078|ref|YP_003541571.1| - 0.014 14.4 0.0 0.086 11.9 0.0 2.3 2 1 0 2 2 2 0 Type II/IV secretion system protein SRP54 PF00448.22 gi|294495078|ref|YP_003541571.1| - 0.027 14.1 0.1 5.9 6.5 0.1 2.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|294495078|ref|YP_003541571.1| - 0.029 14.3 0.0 7.5 6.4 0.0 3.2 2 0 0 2 2 2 0 NTPase Ras PF00071.22 gi|294495078|ref|YP_003541571.1| - 0.031 13.9 0.2 14 5.2 0.0 3.2 3 0 0 3 3 2 0 Ras family AAA_3 PF07726.11 gi|294495078|ref|YP_003541571.1| - 0.032 14.1 0.1 2.1 8.2 0.0 3.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|294495078|ref|YP_003541571.1| - 0.05 14.2 12.3 0.076 13.6 0.0 4.6 5 1 0 5 5 2 0 AAA domain PduV-EutP PF10662.9 gi|294495078|ref|YP_003541571.1| - 0.05 13.3 0.0 2.7 7.7 0.0 2.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_19 PF13245.6 gi|294495078|ref|YP_003541571.1| - 0.056 13.8 0.1 2.3 8.5 0.1 3.3 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|294495078|ref|YP_003541571.1| - 0.056 13.2 0.0 9.4 6.1 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain TP_methylase PF00590.20 gi|294495078|ref|YP_003541571.1| - 0.073 13.0 0.0 7.9 6.3 0.0 3.4 2 0 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases AAA_6 PF12774.7 gi|294495078|ref|YP_003541571.1| - 0.11 11.5 0.0 4.1 6.3 0.0 2.6 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region CbiA PF01656.23 gi|294495078|ref|YP_003541571.1| - 0.16 12.0 0.0 32 4.6 0.0 3.5 3 1 0 3 3 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Neugrin PF06413.11 gi|294495078|ref|YP_003541571.1| - 0.51 10.3 6.7 1.2 9.1 6.7 1.6 1 0 0 1 1 1 0 Neugrin Atg14 PF10186.9 gi|294495078|ref|YP_003541571.1| - 0.71 8.9 8.0 1.9 7.5 8.0 1.7 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF87 PF01935.17 gi|294495078|ref|YP_003541571.1| - 2.2 8.3 0.0 2.2 8.3 0.0 3.9 5 0 0 5 5 3 0 Helicase HerA, central domain AAA_23 PF13476.6 gi|294495078|ref|YP_003541571.1| - 3.7 8.0 33.3 1.1 9.7 0.1 5.0 4 2 0 4 4 3 0 AAA domain ALMT PF11744.8 gi|294495078|ref|YP_003541571.1| - 3.9 6.2 6.1 7.3 5.3 6.1 1.4 1 0 0 1 1 1 0 Aluminium activated malate transporter Cpn60_TCP1 PF00118.24 gi|294495079|ref|YP_003541572.1| - 1.9e-101 340.1 23.3 4.3e-101 339.0 23.3 1.5 1 1 0 1 1 1 1 TCP-1/cpn60 chaperonin family Cpn10 PF00166.21 gi|294495080|ref|YP_003541573.1| - 5e-26 90.6 0.9 5.5e-26 90.5 0.9 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit HTH_24 PF13412.6 gi|294495081|ref|YP_003541574.1| - 4.3e-08 32.6 0.5 8.8e-08 31.6 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|294495081|ref|YP_003541574.1| - 6.2e-07 29.2 0.1 1.1e-06 28.4 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|294495081|ref|YP_003541574.1| - 4.8e-06 26.5 0.1 2.8e-05 24.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|294495081|ref|YP_003541574.1| - 5e-06 26.3 0.0 1.2e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|294495081|ref|YP_003541574.1| - 1.4e-05 24.9 0.1 2.2e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|294495081|ref|YP_003541574.1| - 2e-05 24.4 0.1 3.9e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|294495081|ref|YP_003541574.1| - 5.2e-05 23.5 0.1 9e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator RPA_C PF08784.11 gi|294495081|ref|YP_003541574.1| - 0.0001 22.9 0.1 0.00019 22.0 0.1 1.4 1 0 0 1 1 1 1 Replication protein A C terminal HTH_IclR PF09339.10 gi|294495081|ref|YP_003541574.1| - 0.0004 20.1 0.0 0.00073 19.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|294495081|ref|YP_003541574.1| - 0.0011 19.2 0.0 0.0019 18.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|294495081|ref|YP_003541574.1| - 0.0021 18.5 0.4 0.0068 16.9 0.2 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain RP-C PF03428.13 gi|294495081|ref|YP_003541574.1| - 0.0022 17.7 0.2 0.0048 16.6 0.2 1.5 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_Crp_2 PF13545.6 gi|294495081|ref|YP_003541574.1| - 0.007 16.3 0.3 0.01 15.8 0.0 1.6 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|294495081|ref|YP_003541574.1| - 0.0074 16.3 0.0 0.016 15.2 0.0 1.6 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus DUF2250 PF10007.9 gi|294495081|ref|YP_003541574.1| - 0.0077 16.3 0.2 0.011 15.8 0.2 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.17 gi|294495081|ref|YP_003541574.1| - 0.012 15.5 0.2 0.022 14.6 0.2 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit RYDR_ITPR PF01365.21 gi|294495081|ref|YP_003541574.1| - 0.02 14.3 0.0 6.2 6.2 0.0 2.1 1 1 0 2 2 2 0 RIH domain EAP30 PF04157.16 gi|294495081|ref|YP_003541574.1| - 0.023 14.0 0.0 0.033 13.5 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family Rio2_N PF09202.11 gi|294495081|ref|YP_003541574.1| - 0.029 14.6 0.1 0.042 14.1 0.1 1.3 1 0 0 1 1 1 0 Rio2, N-terminal HTH_15 PF12324.8 gi|294495081|ref|YP_003541574.1| - 0.055 13.4 0.0 0.079 12.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase HTH_45 PF14947.6 gi|294495081|ref|YP_003541574.1| - 0.066 13.2 0.1 0.096 12.7 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix GntR PF00392.21 gi|294495081|ref|YP_003541574.1| - 0.13 11.9 0.3 0.24 11.1 0.3 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family ABC_tran PF00005.27 gi|294495082|ref|YP_003541575.1| - 6.8e-23 81.7 0.0 1.2e-22 80.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|294495082|ref|YP_003541575.1| - 4e-14 53.1 1.8 1.2e-07 31.8 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|294495082|ref|YP_003541575.1| - 1.4e-05 25.0 0.7 0.11 12.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|294495082|ref|YP_003541575.1| - 0.00045 19.7 0.2 0.027 13.9 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|294495082|ref|YP_003541575.1| - 0.0016 18.1 0.0 0.0033 17.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|294495082|ref|YP_003541575.1| - 0.0051 16.9 0.0 0.009 16.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|294495082|ref|YP_003541575.1| - 0.0064 16.8 0.1 0.038 14.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|294495082|ref|YP_003541575.1| - 0.0081 16.1 0.1 1.2 9.0 0.0 2.3 2 0 0 2 2 2 1 NTPase AAA_16 PF13191.6 gi|294495082|ref|YP_003541575.1| - 0.015 15.7 0.0 0.027 14.9 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|294495082|ref|YP_003541575.1| - 0.019 14.7 0.1 0.13 12.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.13 gi|294495082|ref|YP_003541575.1| - 0.021 14.0 0.0 0.18 10.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_23 PF13476.6 gi|294495082|ref|YP_003541575.1| - 0.034 14.7 0.9 0.055 14.0 0.9 1.2 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|294495082|ref|YP_003541575.1| - 0.041 13.6 0.1 0.27 11.0 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|294495082|ref|YP_003541575.1| - 0.048 13.6 0.0 0.093 12.6 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 gi|294495082|ref|YP_003541575.1| - 0.082 12.4 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_13 PF13166.6 gi|294495082|ref|YP_003541575.1| - 0.087 11.5 0.2 0.8 8.3 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.7 gi|294495082|ref|YP_003541575.1| - 0.12 11.3 0.0 2.8 6.8 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_33 PF13671.6 gi|294495082|ref|YP_003541575.1| - 0.19 11.9 0.0 0.66 10.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain Pyr_redox_2 PF07992.14 gi|294495083|ref|YP_003541576.1| - 4.9e-55 186.8 1.8 6.1e-55 186.5 1.8 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|294495083|ref|YP_003541576.1| - 1e-17 64.4 0.0 2.2e-17 63.3 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|294495083|ref|YP_003541576.1| - 1.5e-16 60.7 4.4 1.2e-14 54.7 0.3 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|294495083|ref|YP_003541576.1| - 9e-10 38.3 4.8 7e-09 35.4 0.1 2.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|294495083|ref|YP_003541576.1| - 4.1e-06 26.3 3.1 0.0058 15.9 0.9 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|294495083|ref|YP_003541576.1| - 4.5e-06 26.0 2.8 0.0001 21.5 1.6 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|294495083|ref|YP_003541576.1| - 1.4e-05 24.5 0.3 0.01 15.1 0.0 3.0 2 1 1 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|294495083|ref|YP_003541576.1| - 4.6e-05 23.6 2.6 0.004 17.4 0.2 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|294495083|ref|YP_003541576.1| - 0.00036 19.4 6.5 0.033 12.9 0.9 2.8 2 1 1 3 3 3 2 HI0933-like protein 3HCDH_N PF02737.18 gi|294495083|ref|YP_003541576.1| - 0.0016 18.4 3.4 0.33 10.8 0.1 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.7 gi|294495083|ref|YP_003541576.1| - 0.0017 17.8 8.4 0.21 10.9 1.4 3.0 2 1 1 3 3 3 2 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 gi|294495083|ref|YP_003541576.1| - 0.0022 17.4 0.8 0.12 11.7 0.2 2.6 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|294495083|ref|YP_003541576.1| - 0.0034 16.3 2.1 0.19 10.5 0.2 2.6 2 1 1 3 3 3 1 Tryptophan halogenase F420_oxidored PF03807.17 gi|294495083|ref|YP_003541576.1| - 0.0062 17.1 1.4 2.3 8.9 0.1 2.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent FAD_binding_2 PF00890.24 gi|294495083|ref|YP_003541576.1| - 0.0091 15.1 2.5 0.0091 15.1 2.5 2.2 2 1 1 3 3 3 1 FAD binding domain Thi4 PF01946.17 gi|294495083|ref|YP_003541576.1| - 0.01 15.1 0.5 0.065 12.5 0.2 2.3 2 0 0 2 2 2 0 Thi4 family GDI PF00996.18 gi|294495083|ref|YP_003541576.1| - 0.043 12.3 0.7 0.092 11.2 0.0 1.8 2 0 0 2 2 2 0 GDP dissociation inhibitor XdhC_C PF13478.6 gi|294495083|ref|YP_003541576.1| - 0.082 13.4 0.2 5.8 7.4 0.0 2.8 2 1 0 2 2 2 0 XdhC Rossmann domain DAO PF01266.24 gi|294495083|ref|YP_003541576.1| - 0.097 12.2 9.8 2.5 7.6 2.7 3.1 3 0 0 3 3 3 0 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|294495083|ref|YP_003541576.1| - 0.1 12.2 5.2 3.9 7.0 1.1 2.8 3 0 0 3 3 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.12 gi|294495083|ref|YP_003541576.1| - 0.2 10.7 3.1 1.2 8.1 0.4 2.5 2 1 1 3 3 3 0 Lycopene cyclase protein AAA PF00004.29 gi|294495084|ref|YP_003541577.1| - 2.2e-12 47.5 0.0 6.8e-12 45.9 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|294495084|ref|YP_003541577.1| - 1.5e-06 28.3 0.1 1e-05 25.6 0.0 2.2 2 1 0 3 3 3 1 Rad17 P-loop domain DNA_pol3_delta2 PF13177.6 gi|294495084|ref|YP_003541577.1| - 0.00011 22.0 1.9 0.0019 18.0 0.1 3.0 2 1 1 3 3 3 1 DNA polymerase III, delta subunit AAA_22 PF13401.6 gi|294495084|ref|YP_003541577.1| - 0.00012 22.4 3.1 0.25 11.6 0.2 4.1 3 1 0 3 3 3 1 AAA domain AAA_14 PF13173.6 gi|294495084|ref|YP_003541577.1| - 0.00023 21.2 0.1 0.00099 19.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_6 PF12774.7 gi|294495084|ref|YP_003541577.1| - 0.00023 20.2 0.3 0.0046 16.0 0.0 2.6 3 0 0 3 3 3 1 Hydrolytic ATP binding site of dynein motor region RuvB_N PF05496.12 gi|294495084|ref|YP_003541577.1| - 0.00094 19.0 0.6 0.0038 17.0 0.0 2.3 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|294495084|ref|YP_003541577.1| - 0.003 17.3 0.1 0.0082 15.9 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_30 PF13604.6 gi|294495084|ref|YP_003541577.1| - 0.009 15.8 2.1 0.013 15.2 0.4 2.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|294495084|ref|YP_003541577.1| - 0.018 14.6 0.6 0.17 11.5 0.1 2.4 1 1 0 2 2 2 0 AAA domain TniB PF05621.11 gi|294495084|ref|YP_003541577.1| - 0.019 14.4 0.3 0.86 9.0 0.0 3.1 3 0 0 3 3 3 0 Bacterial TniB protein DEAD PF00270.29 gi|294495084|ref|YP_003541577.1| - 0.02 14.6 0.2 0.59 9.9 0.0 2.4 1 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_16 PF13191.6 gi|294495084|ref|YP_003541577.1| - 0.025 15.0 0.0 0.091 13.1 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|294495084|ref|YP_003541577.1| - 0.044 14.3 0.0 0.16 12.5 0.0 2.0 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|294495084|ref|YP_003541577.1| - 0.083 12.4 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|294495084|ref|YP_003541577.1| - 0.093 12.0 0.1 0.27 10.5 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_assoc_2 PF16193.5 gi|294495084|ref|YP_003541577.1| - 0.097 13.0 0.1 0.4 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA C-terminal domain PTA_PTB PF01515.19 gi|294495085|ref|YP_003541578.1| - 5.1e-06 26.0 0.0 0.00022 20.6 0.0 2.1 1 1 1 2 2 2 2 Phosphate acetyl/butaryl transferase MtrA PF04208.14 gi|294495086|ref|YP_003541579.1| - 1.7e-55 187.3 0.0 2.3e-55 186.9 0.0 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrH PF02007.18 gi|294495087|ref|YP_003541580.1| - 1.1e-116 389.2 0.0 1.3e-116 389.0 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit DUF2674 PF10879.8 gi|294495088|ref|YP_003541581.1| - 0.013 15.1 3.8 2.3 7.9 0.0 4.0 3 1 1 4 4 4 0 Protein of unknown function (DUF2674) KKLCAg1 PF15204.6 gi|294495088|ref|YP_003541581.1| - 0.14 12.2 0.1 0.3 11.2 0.1 1.5 1 0 0 1 1 1 0 Kita-kyushu lung cancer antigen 1 ILVD_EDD PF00920.21 gi|294495089|ref|YP_003541582.1| - 1.1e-221 736.9 4.2 1.3e-221 736.7 4.2 1.0 1 0 0 1 1 1 1 Dehydratase family TcdB_N PF12918.7 gi|294495089|ref|YP_003541582.1| - 0.071 13.4 0.2 0.17 12.2 0.2 1.5 1 0 0 1 1 1 0 TcdB toxin N-terminal helical domain Radical_SAM PF04055.21 gi|294495090|ref|YP_003541583.1| - 5.5e-10 39.9 0.0 1.5e-09 38.4 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily FKBP_C PF00254.28 gi|294495091|ref|YP_003541584.1| - 4.5e-23 81.4 0.0 9.6e-23 80.3 0.0 1.5 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase LPAM_1 PF08139.12 gi|294495091|ref|YP_003541584.1| - 0.51 10.9 2.8 1 10.0 2.8 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site NTP_transferase PF00483.23 gi|294495092|ref|YP_003541585.1| - 6.6e-45 153.6 0.0 8.1e-45 153.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|294495092|ref|YP_003541585.1| - 9.5e-25 85.4 48.5 7.6e-08 31.8 1.7 5.6 2 1 5 7 7 7 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|294495092|ref|YP_003541585.1| - 1e-10 41.1 29.5 0.00011 21.9 6.1 5.5 3 1 2 5 5 5 4 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.7 gi|294495092|ref|YP_003541585.1| - 2e-07 31.5 0.0 3e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF4954 PF16314.5 gi|294495092|ref|YP_003541585.1| - 0.01 14.0 6.5 0.014 13.5 6.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|294495092|ref|YP_003541585.1| - 0.14 11.0 5.3 2.1 7.2 5.3 2.5 1 1 0 1 1 1 0 L-fucokinase tRNA_anti-codon PF01336.25 gi|294495093|ref|YP_003541586.1| - 1.5e-06 28.1 0.1 2.1e-06 27.6 0.1 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF4131 PF13567.6 gi|294495093|ref|YP_003541586.1| - 0.0036 17.0 0.0 0.011 15.4 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4131) YajC PF02699.15 gi|294495093|ref|YP_003541586.1| - 0.12 12.3 0.2 2.1 8.3 0.0 2.1 2 0 0 2 2 2 0 Preprotein translocase subunit DNA_photolyase PF00875.18 gi|294495094|ref|YP_003541587.1| - 1.7e-21 76.9 1.7 1.8e-21 76.8 0.3 1.7 2 0 0 2 2 2 1 DNA photolyase Lactamase_B_2 PF12706.7 gi|294495095|ref|YP_003541588.1| - 7.4e-05 22.3 0.0 0.00012 21.6 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|294495095|ref|YP_003541588.1| - 7.8e-05 22.8 0.0 0.00013 22.0 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.25 gi|294495095|ref|YP_003541588.1| - 0.0013 19.0 0.0 0.0035 17.5 0.0 1.9 1 1 0 1 1 1 1 Flavodoxin Lactamase_B_3 PF13483.6 gi|294495095|ref|YP_003541588.1| - 0.0015 18.4 0.0 0.0035 17.3 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain T4_deiodinase PF00837.17 gi|294495095|ref|YP_003541588.1| - 0.17 11.1 0.0 0.32 10.3 0.0 1.4 1 0 0 1 1 1 0 Iodothyronine deiodinase Fer4_13 PF13370.6 gi|294495096|ref|YP_003541589.1| - 3.5e-18 65.9 6.9 4.2e-18 65.6 6.9 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|294495096|ref|YP_003541589.1| - 5.7e-07 30.2 3.8 8.2e-07 29.7 3.8 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|294495096|ref|YP_003541589.1| - 0.0015 18.6 11.0 0.0094 16.1 4.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|294495096|ref|YP_003541589.1| - 0.0016 19.0 3.2 0.0028 18.2 3.2 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294495096|ref|YP_003541589.1| - 0.0064 16.6 2.4 0.014 15.5 2.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495096|ref|YP_003541589.1| - 0.034 15.1 2.2 10 7.1 3.3 2.2 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_19 PF06902.11 gi|294495096|ref|YP_003541589.1| - 0.038 14.1 0.4 0.052 13.6 0.4 1.2 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_10 PF13237.6 gi|294495096|ref|YP_003541589.1| - 0.053 13.7 3.5 0.15 12.2 3.8 1.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|294495096|ref|YP_003541589.1| - 0.056 13.3 7.4 0.84 9.6 0.4 2.7 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|294495096|ref|YP_003541589.1| - 0.11 12.6 0.8 0.11 12.6 0.8 2.3 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|294495096|ref|YP_003541589.1| - 0.64 10.2 6.2 1.9 8.7 0.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Peptidase_M42 PF05343.14 gi|294495097|ref|YP_003541590.1| - 0.01 14.9 0.0 0.012 14.6 0.0 1.0 1 0 0 1 1 1 0 M42 glutamyl aminopeptidase TrmB PF01978.19 gi|294495097|ref|YP_003541590.1| - 0.098 12.5 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|294495097|ref|YP_003541590.1| - 0.15 12.0 0.1 1.9 8.4 0.0 2.2 1 1 1 2 2 2 0 MarR family Pyr_redox_2 PF07992.14 gi|294495098|ref|YP_003541591.1| - 7.4e-18 64.8 0.4 1.6e-17 63.7 0.4 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|294495098|ref|YP_003541591.1| - 7.3e-09 35.1 43.3 0.0012 18.6 2.7 6.0 5 1 0 5 5 5 4 4Fe-4S binding domain FlpD PF02662.16 gi|294495098|ref|YP_003541591.1| - 1.6e-08 34.6 1.5 4e-07 30.1 0.0 3.3 3 0 0 3 3 3 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4_10 PF13237.6 gi|294495098|ref|YP_003541591.1| - 2.5e-08 33.9 42.2 5.4e-06 26.4 9.5 4.6 4 1 1 5 5 5 3 4Fe-4S dicluster domain FAD_oxidored PF12831.7 gi|294495098|ref|YP_003541591.1| - 1.6e-07 31.1 0.3 3.5e-07 29.9 0.3 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_2 PF12797.7 gi|294495098|ref|YP_003541591.1| - 2.4e-07 30.4 45.0 0.008 16.2 2.3 5.2 5 0 0 5 5 4 4 4Fe-4S binding domain DAO PF01266.24 gi|294495098|ref|YP_003541591.1| - 2.7e-06 27.2 0.0 6.6e-05 22.7 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|294495098|ref|YP_003541591.1| - 4.7e-06 25.9 2.3 8e-06 25.2 2.3 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_7 PF12838.7 gi|294495098|ref|YP_003541591.1| - 4.9e-06 27.0 42.8 0.028 15.0 0.7 5.8 5 1 2 7 7 6 5 4Fe-4S dicluster domain NAD_binding_8 PF13450.6 gi|294495098|ref|YP_003541591.1| - 6.6e-06 26.3 0.1 2.1e-05 24.7 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|294495098|ref|YP_003541591.1| - 1.8e-05 24.0 1.9 4.4e-05 22.8 1.7 1.7 1 1 1 2 2 2 1 Glucose inhibited division protein A Fer4_21 PF14697.6 gi|294495098|ref|YP_003541591.1| - 4.4e-05 23.5 37.1 0.23 11.6 10.9 4.5 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495098|ref|YP_003541591.1| - 0.00015 22.6 32.7 0.13 13.2 0.1 5.4 6 0 0 6 6 4 4 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|294495098|ref|YP_003541591.1| - 0.00033 20.8 9.3 0.00033 20.8 9.3 4.4 4 1 1 5 5 3 2 4Fe-4S dicluster domain Thi4 PF01946.17 gi|294495098|ref|YP_003541591.1| - 0.00044 19.6 0.0 0.00094 18.5 0.0 1.5 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|294495098|ref|YP_003541591.1| - 0.0016 17.8 0.2 0.0031 16.8 0.2 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|294495098|ref|YP_003541591.1| - 0.0028 18.2 0.3 0.013 16.1 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_6 PF12837.7 gi|294495098|ref|YP_003541591.1| - 0.0033 17.4 47.8 0.043 13.9 4.0 5.2 5 0 0 5 5 4 3 4Fe-4S binding domain Pyr_redox_3 PF13738.6 gi|294495098|ref|YP_003541591.1| - 0.0037 16.6 2.0 0.077 12.2 0.9 2.6 2 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|294495098|ref|YP_003541591.1| - 0.0048 15.7 0.7 0.01 14.6 0.8 1.5 2 0 0 2 2 2 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|294495098|ref|YP_003541591.1| - 0.085 12.1 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Fer4_17 PF13534.6 gi|294495098|ref|YP_003541591.1| - 0.79 10.3 36.9 0.16 12.6 5.4 5.2 6 0 0 6 6 4 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|294495099|ref|YP_003541592.1| - 1.6e-09 38.1 8.9 2.6e-09 37.4 8.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294495099|ref|YP_003541592.1| - 9.5e-08 32.1 9.8 1.6e-07 31.4 9.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294495099|ref|YP_003541592.1| - 1.5e-06 28.2 10.0 3.4e-06 27.1 10.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|294495099|ref|YP_003541592.1| - 1.8e-06 28.4 10.2 3.1e-06 27.7 10.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|294495099|ref|YP_003541592.1| - 1.9e-06 28.3 11.2 3.3e-06 27.5 11.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294495099|ref|YP_003541592.1| - 0.00015 21.7 3.4 0.00015 21.7 3.4 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.7 gi|294495099|ref|YP_003541592.1| - 0.00021 21.6 2.5 0.00021 21.6 2.5 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|294495099|ref|YP_003541592.1| - 0.00025 21.9 12.1 0.00066 20.6 12.1 1.7 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|294495099|ref|YP_003541592.1| - 0.0051 16.6 12.7 0.0053 16.5 3.4 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|294495099|ref|YP_003541592.1| - 0.012 15.7 7.7 0.034 14.3 7.7 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294495099|ref|YP_003541592.1| - 0.029 14.4 3.4 0.029 14.4 3.4 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|294495099|ref|YP_003541592.1| - 0.6 11.2 16.0 1.4 10.0 5.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|294495099|ref|YP_003541592.1| - 1.2 10.1 12.5 0.24 12.2 2.7 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|294495099|ref|YP_003541592.1| - 1.5 9.4 6.9 0.46 11.1 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|294495099|ref|YP_003541592.1| - 5.8 7.1 6.5 12 6.1 5.5 1.8 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S CCG PF02754.16 gi|294495100|ref|YP_003541593.1| - 1.1e-18 67.3 2.9 1.8e-10 40.9 0.1 2.4 2 0 0 2 2 2 2 Cysteine-rich domain DMA PF03474.14 gi|294495100|ref|YP_003541593.1| - 0.081 12.5 0.1 17 5.1 0.0 2.3 2 0 0 2 2 2 0 DMRTA motif Aconitase PF00330.20 gi|294495101|ref|YP_003541594.1| - 1e-101 341.3 2.4 5.7e-64 216.8 0.0 2.5 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) AntA PF08346.12 gi|294495102|ref|YP_003541595.1| - 0.02 15.4 0.0 0.029 14.9 0.0 1.3 1 1 0 1 1 1 0 AntA/AntB antirepressor Usp PF00582.26 gi|294495103|ref|YP_003541596.1| - 1.8e-35 122.5 0.1 2.1e-35 122.3 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family NCA2 PF08637.10 gi|294495103|ref|YP_003541596.1| - 0.047 12.9 0.0 0.064 12.4 0.0 1.2 1 0 0 1 1 1 0 ATP synthase regulation protein NCA2 PAC2 PF09754.9 gi|294495103|ref|YP_003541596.1| - 0.067 13.2 0.0 8.5 6.3 0.0 2.1 2 0 0 2 2 2 0 PAC2 family MrpF_PhaF PF04066.13 gi|294495104|ref|YP_003541597.1| - 0.072 13.5 5.2 0.12 12.8 5.2 1.5 1 1 0 1 1 1 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) Pyr_redox_2 PF07992.14 gi|294495105|ref|YP_003541598.1| - 2.7e-18 66.2 0.0 6.2e-12 45.4 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|294495105|ref|YP_003541598.1| - 2.7e-05 23.9 0.0 0.035 13.7 0.0 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|294495105|ref|YP_003541598.1| - 0.00013 22.4 0.2 0.35 11.4 0.0 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|294495105|ref|YP_003541598.1| - 0.0017 18.3 0.0 0.44 10.5 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|294495105|ref|YP_003541598.1| - 0.0069 16.6 0.1 0.015 15.5 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Sacchrp_dh_NADP PF03435.18 gi|294495105|ref|YP_003541598.1| - 0.063 13.5 0.1 0.13 12.5 0.1 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Trp_halogenase PF04820.14 gi|294495105|ref|YP_003541598.1| - 0.13 11.1 0.0 0.24 10.2 0.0 1.5 1 0 0 1 1 1 0 Tryptophan halogenase DUF1641 PF07849.11 gi|294495106|ref|YP_003541599.1| - 6.4e-14 51.5 0.7 1.2e-13 50.6 0.7 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) Acetyltransf_7 PF13508.7 gi|294495107|ref|YP_003541600.1| - 0.0025 18.2 0.4 0.004 17.6 0.4 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|294495107|ref|YP_003541600.1| - 0.0031 17.7 0.1 0.0044 17.2 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|294495107|ref|YP_003541600.1| - 0.0032 17.4 0.2 0.005 16.8 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|294495107|ref|YP_003541600.1| - 0.0083 16.3 0.1 0.013 15.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|294495107|ref|YP_003541600.1| - 0.16 11.9 0.0 0.33 11.0 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein VWA_2 PF13519.6 gi|294495108|ref|YP_003541601.1| - 4.2e-05 24.2 0.0 0.0001 22.9 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF4350 PF14258.6 gi|294495108|ref|YP_003541601.1| - 0.095 13.1 0.1 0.47 10.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) CbbQ_C PF08406.10 gi|294495109|ref|YP_003541602.1| - 3e-32 110.7 0.1 1.1e-31 108.9 0.0 1.9 2 0 0 2 2 2 1 CbbQ/NirQ/NorQ C-terminal AAA_5 PF07728.14 gi|294495109|ref|YP_003541602.1| - 4.8e-29 101.1 0.0 6.5e-29 100.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|294495109|ref|YP_003541602.1| - 0.0021 17.9 0.0 0.0036 17.1 0.0 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_6 PF12774.7 gi|294495109|ref|YP_003541602.1| - 0.0032 16.5 0.0 0.01 14.9 0.0 1.8 3 0 0 3 3 3 1 Hydrolytic ATP binding site of dynein motor region MCM PF00493.23 gi|294495109|ref|YP_003541602.1| - 0.0045 16.1 0.0 0.007 15.5 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain AAA PF00004.29 gi|294495109|ref|YP_003541602.1| - 0.0077 16.7 0.0 0.012 16.1 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|294495109|ref|YP_003541602.1| - 0.0094 15.7 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_22 PF13401.6 gi|294495109|ref|YP_003541602.1| - 0.014 15.7 0.0 0.027 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|294495109|ref|YP_003541602.1| - 0.03 14.7 0.0 0.053 13.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.6 gi|294495109|ref|YP_003541602.1| - 0.035 14.2 0.0 0.078 13.0 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|294495109|ref|YP_003541602.1| - 0.051 13.1 0.0 0.072 12.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Cupin_5 PF06172.11 gi|294495110|ref|YP_003541603.1| - 1e-46 158.6 0.0 1.2e-46 158.4 0.0 1.0 1 0 0 1 1 1 1 Cupin superfamily (DUF985) PAS_4 PF08448.10 gi|294495111|ref|YP_003541604.1| - 6.6e-31 106.8 0.0 3e-18 66.1 0.0 3.5 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|294495111|ref|YP_003541604.1| - 2.4e-29 102.1 0.3 4.5e-29 101.2 0.3 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|294495111|ref|YP_003541604.1| - 1.8e-27 95.6 0.0 2.5e-15 56.5 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|294495111|ref|YP_003541604.1| - 1.5e-23 83.0 0.0 1.3e-10 41.4 0.0 3.6 3 0 0 3 3 3 3 PAS domain HisKA PF00512.25 gi|294495111|ref|YP_003541604.1| - 2.6e-20 72.2 0.1 5.8e-20 71.1 0.1 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 gi|294495111|ref|YP_003541604.1| - 2.6e-17 62.9 0.0 2.2e-14 53.5 0.0 3.6 3 0 0 3 3 3 1 PAS fold GAF_2 PF13185.6 gi|294495111|ref|YP_003541604.1| - 2.1e-12 47.5 0.0 5.8e-11 42.8 0.0 2.3 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|294495111|ref|YP_003541604.1| - 7.8e-12 44.9 0.0 0.0072 16.3 0.0 3.7 3 0 0 3 3 3 3 PAS domain GAF_3 PF13492.6 gi|294495111|ref|YP_003541604.1| - 1e-06 29.1 0.0 2.5e-06 27.9 0.0 1.6 2 0 0 2 2 2 1 GAF domain HATPase_c_3 PF13589.6 gi|294495111|ref|YP_003541604.1| - 2.3e-05 24.2 0.1 4.1e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|294495111|ref|YP_003541604.1| - 0.0022 18.7 0.0 0.0047 17.6 0.0 1.6 1 0 0 1 1 1 1 GAF domain DUF402 PF04167.13 gi|294495111|ref|YP_003541604.1| - 0.059 13.6 0.1 0.16 12.2 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF402) DUF4974 PF16344.5 gi|294495111|ref|YP_003541604.1| - 0.23 11.5 2.8 1.1 9.3 0.1 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4974) Acetyltransf_16 PF05301.11 gi|294495112|ref|YP_003541605.1| - 0.068 12.9 0.0 0.078 12.7 0.0 1.0 1 0 0 1 1 1 0 GNAT acetyltransferase, Mec-17 FKBP_C PF00254.28 gi|294495113|ref|YP_003541606.1| - 2.4e-14 53.4 0.3 3.5e-14 52.9 0.3 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase PAS_3 PF08447.12 gi|294495114|ref|YP_003541607.1| - 7.6e-48 160.8 3.1 2.2e-16 59.9 0.0 6.0 6 0 0 6 6 6 3 PAS fold PAS_4 PF08448.10 gi|294495114|ref|YP_003541607.1| - 9.7e-45 151.3 0.0 5.9e-11 42.6 0.0 5.9 6 0 0 6 6 6 5 PAS fold PAS_9 PF13426.7 gi|294495114|ref|YP_003541607.1| - 1.7e-40 137.5 2.5 1.1e-13 51.4 0.1 5.9 5 0 0 5 5 5 5 PAS domain PAS PF00989.25 gi|294495114|ref|YP_003541607.1| - 7.2e-39 132.3 0.1 8e-16 58.1 0.0 5.6 5 1 0 5 5 5 4 PAS fold HATPase_c PF02518.26 gi|294495114|ref|YP_003541607.1| - 1.9e-31 108.9 0.2 5.8e-31 107.3 0.2 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|294495114|ref|YP_003541607.1| - 3.8e-21 74.9 0.1 8.9e-21 73.7 0.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_11 PF14598.6 gi|294495114|ref|YP_003541607.1| - 1.3e-12 47.8 0.0 8.7e-08 32.3 0.0 3.6 3 0 0 3 3 3 2 PAS domain PAS_8 PF13188.7 gi|294495114|ref|YP_003541607.1| - 6.2e-12 45.3 0.0 0.027 14.5 0.0 5.6 5 0 0 5 5 5 2 PAS domain GAF_2 PF13185.6 gi|294495114|ref|YP_003541607.1| - 2.7e-05 24.5 0.0 7.4e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_10 PF13596.6 gi|294495114|ref|YP_003541607.1| - 3e-05 24.5 1.8 0.31 11.6 0.1 4.0 3 0 0 3 3 3 1 PAS domain HATPase_c_3 PF13589.6 gi|294495114|ref|YP_003541607.1| - 4.9e-05 23.2 0.1 0.00015 21.6 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1048 PF06304.11 gi|294495114|ref|YP_003541607.1| - 0.015 15.7 0.4 0.34 11.4 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1048) SIMPL PF04402.14 gi|294495115|ref|YP_003541608.1| - 1.9e-51 175.4 6.1 2.2e-51 175.2 6.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) DUF4136 PF13590.6 gi|294495115|ref|YP_003541608.1| - 0.15 12.6 0.3 0.31 11.6 0.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4136) YbaB_DNA_bd PF02575.16 gi|294495115|ref|YP_003541608.1| - 2.7 8.3 6.7 1.2 9.4 2.1 2.6 2 1 0 2 2 2 0 YbaB/EbfC DNA-binding family Aldolase_II PF00596.21 gi|294495117|ref|YP_003541610.1| - 2.6e-37 128.6 0.4 3e-37 128.4 0.4 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain CDP-OH_P_transf PF01066.21 gi|294495118|ref|YP_003541611.1| - 5.7e-11 43.0 3.7 5.7e-11 43.0 3.7 2.7 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Archease PF01951.16 gi|294495119|ref|YP_003541612.1| - 2.6e-44 150.8 0.8 2.9e-44 150.7 0.8 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) RtcB PF01139.17 gi|294495120|ref|YP_003541613.1| - 2.2e-166 554.1 0.3 2.5e-166 553.9 0.3 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB TGT_C2 PF14810.6 gi|294495121|ref|YP_003541614.1| - 1.9e-29 101.6 0.0 2.9e-29 101.0 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|294495121|ref|YP_003541614.1| - 4.3e-10 39.4 0.1 6.2e-10 38.9 0.1 1.3 1 0 0 1 1 1 1 PUA domain PUA_3 PF17785.1 gi|294495121|ref|YP_003541614.1| - 0.038 13.8 0.0 0.11 12.3 0.0 1.8 1 0 0 1 1 1 0 PUA-like domain Phage_CI_C PF16452.5 gi|294495121|ref|YP_003541614.1| - 0.058 13.7 0.0 0.41 11.0 0.0 2.0 1 1 1 2 2 2 0 Bacteriophage CI repressor C-terminal domain Bactofilin PF04519.13 gi|294495122|ref|YP_003541615.1| - 3e-11 43.5 14.3 8.6e-05 22.8 2.5 4.1 2 2 2 4 4 4 4 Polymer-forming cytoskeletal DUF3494 PF11999.8 gi|294495122|ref|YP_003541615.1| - 0.021 14.4 2.5 5.2 6.6 0.2 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3494) Hexapep PF00132.24 gi|294495122|ref|YP_003541615.1| - 0.13 12.0 32.0 0.57 10.0 0.7 6.4 6 0 0 6 6 6 0 Bacterial transferase hexapeptide (six repeats) Aminotran_3 PF00202.21 gi|294495123|ref|YP_003541616.1| - 7.3e-118 393.7 0.4 8.8e-118 393.5 0.4 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|294495123|ref|YP_003541616.1| - 1.3e-05 24.5 0.0 1.8e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|294495123|ref|YP_003541616.1| - 1.6e-05 24.4 0.1 3.1e-05 23.4 0.1 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|294495123|ref|YP_003541616.1| - 0.00048 19.2 0.0 0.0013 17.8 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|294495124|ref|YP_003541617.1| - 3.8e-61 207.3 0.0 4.4e-61 207.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|294495124|ref|YP_003541617.1| - 3.5e-09 36.4 0.4 5.1e-09 35.9 0.4 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|294495124|ref|YP_003541617.1| - 2.9e-07 29.8 0.0 7.7e-07 28.4 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|294495124|ref|YP_003541617.1| - 5e-06 25.3 0.2 2.3e-05 23.1 0.1 1.9 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|294495124|ref|YP_003541617.1| - 2.6e-05 23.3 0.0 7.2e-05 21.8 0.0 1.6 2 0 0 2 2 2 1 Allinase DHNA PF04038.12 gi|294495125|ref|YP_003541618.1| - 1e-41 141.8 0.0 1.2e-41 141.6 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Rubrerythrin PF02915.17 gi|294495126|ref|YP_003541619.1| - 6.7e-26 91.3 9.3 6.2e-25 88.2 9.3 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|294495126|ref|YP_003541619.1| - 0.001 19.0 3.4 0.0034 17.3 3.4 1.9 1 1 0 1 1 1 1 Ferritin-like domain DZR PF12773.7 gi|294495126|ref|YP_003541619.1| - 0.0015 18.5 0.4 0.0022 18.0 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|294495126|ref|YP_003541619.1| - 0.0062 16.2 2.9 0.012 15.3 2.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|294495126|ref|YP_003541619.1| - 0.014 15.5 1.1 0.014 15.5 1.1 1.8 2 0 0 2 2 1 0 Zinc ribbon domain RecR PF02132.15 gi|294495126|ref|YP_003541619.1| - 0.017 14.7 0.7 0.034 13.7 0.7 1.5 1 0 0 1 1 1 0 RecR protein Haem_oxygenas_2 PF14518.6 gi|294495126|ref|YP_003541619.1| - 0.019 14.8 0.3 0.77 9.5 0.5 2.0 2 0 0 2 2 2 0 Iron-containing redox enzyme zf-C3HC4_3 PF13920.6 gi|294495126|ref|YP_003541619.1| - 0.022 14.6 0.2 0.032 14.1 0.2 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF2492 PF10678.9 gi|294495126|ref|YP_003541619.1| - 0.023 14.9 0.7 0.071 13.4 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2492) zinc_ribbon_15 PF17032.5 gi|294495126|ref|YP_003541619.1| - 0.054 14.3 0.2 0.076 13.8 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon family Prok-RING_1 PF14446.6 gi|294495126|ref|YP_003541619.1| - 0.075 13.0 1.9 0.14 12.1 1.9 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 HypA PF01155.19 gi|294495126|ref|YP_003541619.1| - 0.076 13.0 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_5 PF14634.6 gi|294495126|ref|YP_003541619.1| - 0.15 12.1 0.6 0.24 11.4 0.6 1.3 1 0 0 1 1 1 0 zinc-RING finger domain zf_C2H2_13 PF18508.1 gi|294495126|ref|YP_003541619.1| - 0.23 11.1 2.1 1.8 8.2 0.1 2.3 2 0 0 2 2 2 0 Zinc finger domain Enterotoxin_ST PF02048.16 gi|294495126|ref|YP_003541619.1| - 0.24 11.9 3.7 1.1 9.7 3.7 2.2 1 1 0 1 1 1 0 Heat-stable enterotoxin ST zf-RRN7 PF11781.8 gi|294495126|ref|YP_003541619.1| - 0.49 10.1 3.9 13 5.5 0.1 2.6 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TF_Zn_Ribbon PF08271.12 gi|294495126|ref|YP_003541619.1| - 0.49 10.0 5.8 1.5 8.4 0.9 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding DUF4428 PF14471.6 gi|294495126|ref|YP_003541619.1| - 0.73 9.8 2.4 3.5 7.6 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Desulfoferrod_N PF06397.12 gi|294495126|ref|YP_003541619.1| - 1.1 9.0 7.9 4.8 6.9 7.9 2.0 1 1 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain zf-ribbon_3 PF13248.6 gi|294495126|ref|YP_003541619.1| - 1.9 8.0 5.1 1.7 8.1 0.8 2.0 1 1 1 2 2 2 0 zinc-ribbon domain Peptidase_M1 PF01433.20 gi|294495127|ref|YP_003541620.1| - 1.2e-05 25.0 0.4 2.7e-05 23.9 0.4 1.6 1 0 0 1 1 1 1 Peptidase family M1 domain DUF4944 PF16302.5 gi|294495127|ref|YP_003541620.1| - 0.0077 16.3 0.1 0.019 15.0 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4944) Fe_dep_repr_C PF02742.15 gi|294495128|ref|YP_003541621.1| - 1.3e-23 82.9 1.0 2.4e-23 82.0 0.3 1.8 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain FeoA PF04023.14 gi|294495128|ref|YP_003541621.1| - 6.7e-08 32.7 0.0 1.2e-07 31.8 0.0 1.5 1 0 0 1 1 1 1 FeoA domain DZR PF12773.7 gi|294495129|ref|YP_003541622.1| - 0.0019 18.2 9.3 0.0025 17.8 9.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.9 gi|294495129|ref|YP_003541622.1| - 0.012 15.6 1.2 0.012 15.6 1.2 2.8 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.12 gi|294495129|ref|YP_003541622.1| - 0.026 14.0 10.0 0.14 11.7 3.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Rad50_zn_hook PF04423.14 gi|294495129|ref|YP_003541622.1| - 0.036 13.9 6.7 0.69 9.8 0.4 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif Zn_Tnp_IS1595 PF12760.7 gi|294495129|ref|YP_003541622.1| - 0.055 13.4 9.2 0.7 9.9 0.3 2.8 1 1 2 3 3 3 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|294495129|ref|YP_003541622.1| - 0.072 12.5 16.4 0.37 10.3 1.0 2.8 1 1 2 3 3 3 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|294495129|ref|YP_003541622.1| - 0.19 11.7 6.7 2.7 8.0 3.3 2.7 2 1 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.6 gi|294495129|ref|YP_003541622.1| - 0.2 11.4 1.0 0.2 11.4 1.0 2.6 1 1 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|294495129|ref|YP_003541622.1| - 0.41 10.3 10.1 0.85 9.3 0.6 3.0 1 1 2 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-C3HC4_3 PF13920.6 gi|294495129|ref|YP_003541622.1| - 0.42 10.5 9.4 1.1 9.1 5.9 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.6 gi|294495129|ref|YP_003541622.1| - 0.91 9.5 10.1 2.3 8.2 3.9 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-C2HC_2 PF13913.6 gi|294495129|ref|YP_003541622.1| - 2 8.4 10.1 5.8 6.9 0.8 3.1 3 0 0 3 3 3 0 zinc-finger of a C2HC-type zf-Di19 PF05605.12 gi|294495129|ref|YP_003541622.1| - 2.9 8.3 10.7 5.9 7.3 10.7 1.7 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding DUF35_N PF12172.8 gi|294495129|ref|YP_003541622.1| - 4 7.4 9.4 33 4.5 0.2 2.9 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) A2L_zn_ribbon PF08792.10 gi|294495129|ref|YP_003541622.1| - 6.8 6.5 12.2 1.4 8.7 0.4 3.2 3 1 0 3 3 3 0 A2L zinc ribbon domain HypA PF01155.19 gi|294495129|ref|YP_003541622.1| - 7.1 6.7 9.0 44 4.2 9.0 1.9 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|294495129|ref|YP_003541622.1| - 8.4 6.6 15.2 4.9e+02 0.9 15.2 2.4 1 1 0 1 1 1 0 Zinc ribbon domain FeoB_N PF02421.18 gi|294495130|ref|YP_003541623.1| - 3.6e-56 189.0 0.3 6e-56 188.3 0.3 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|294495130|ref|YP_003541623.1| - 3e-22 79.0 20.2 4.7e-13 49.4 6.2 2.8 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|294495130|ref|YP_003541623.1| - 1e-21 77.2 0.0 2.8e-21 75.7 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|294495130|ref|YP_003541623.1| - 1.1e-10 41.0 1.1 1.1e-10 41.0 1.1 2.9 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus FeoB_Cyto PF17910.1 gi|294495130|ref|YP_003541623.1| - 3.2e-08 34.0 3.5 3.2e-08 34.0 3.5 1.9 2 0 0 2 2 2 1 FeoB cytosolic helical domain Ras PF00071.22 gi|294495130|ref|YP_003541623.1| - 1.7e-06 27.8 0.0 5.3e-06 26.1 0.0 1.9 1 1 0 1 1 1 1 Ras family AIG1 PF04548.16 gi|294495130|ref|YP_003541623.1| - 4.8e-06 26.0 0.0 1.8e-05 24.2 0.0 1.8 2 0 0 2 2 2 1 AIG1 family RsgA_GTPase PF03193.16 gi|294495130|ref|YP_003541623.1| - 4.2e-05 23.5 0.7 0.093 12.6 0.0 3.0 2 1 0 2 2 2 2 RsgA GTPase Roc PF08477.13 gi|294495130|ref|YP_003541623.1| - 0.0034 17.6 0.0 0.0081 16.4 0.0 1.7 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase SRPRB PF09439.10 gi|294495130|ref|YP_003541623.1| - 0.028 13.8 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|294495130|ref|YP_003541623.1| - 0.043 13.9 2.8 0.29 11.2 0.0 2.8 2 1 1 3 3 3 0 Dynamin family IFT46_B_C PF12317.8 gi|294495130|ref|YP_003541623.1| - 0.12 12.1 2.8 0.12 12.1 1.5 1.5 2 0 0 2 2 2 0 Intraflagellar transport complex B protein 46 C terminal MeaB PF03308.16 gi|294495130|ref|YP_003541623.1| - 1.5 7.7 3.8 5.7 5.8 0.0 3.2 3 1 0 4 4 4 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Ku_C PF03730.14 gi|294495130|ref|YP_003541623.1| - 2.6 8.8 4.4 4.4 8.1 4.0 1.6 1 1 0 1 1 1 0 Ku70/Ku80 C-terminal arm Troponin PF00992.20 gi|294495130|ref|YP_003541623.1| - 4.7 7.5 9.5 7.9 6.8 9.5 1.3 1 0 0 1 1 1 0 Troponin AAA PF00004.29 gi|294495131|ref|YP_003541624.1| - 3.8e-43 147.1 0.8 1.3e-42 145.4 0.0 2.3 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|294495131|ref|YP_003541624.1| - 6.2e-13 48.3 0.1 2.6e-12 46.3 0.1 2.1 2 0 0 2 2 2 1 AAA+ lid domain AAA_5 PF07728.14 gi|294495131|ref|YP_003541624.1| - 6.1e-06 26.3 0.0 2.7e-05 24.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|294495131|ref|YP_003541624.1| - 0.00011 22.7 0.0 0.0084 16.5 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_2 PF07724.14 gi|294495131|ref|YP_003541624.1| - 0.00015 21.9 0.1 0.0012 19.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|294495131|ref|YP_003541624.1| - 0.00047 19.9 0.0 0.0017 18.1 0.0 1.9 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|294495131|ref|YP_003541624.1| - 0.00083 19.6 0.4 0.15 12.4 0.0 3.0 2 1 0 3 3 3 1 AAA domain ATPase PF06745.13 gi|294495131|ref|YP_003541624.1| - 0.0025 17.2 1.5 0.056 12.8 0.0 2.6 2 0 0 2 2 2 1 KaiC YabA PF06156.13 gi|294495131|ref|YP_003541624.1| - 0.0032 18.1 1.5 0.055 14.1 3.2 2.1 2 0 0 2 2 2 1 Initiation control protein YabA Sigma54_activat PF00158.26 gi|294495131|ref|YP_003541624.1| - 0.0081 15.9 0.0 0.051 13.3 0.0 2.3 3 0 0 3 3 3 1 Sigma-54 interaction domain GrpE PF01025.19 gi|294495131|ref|YP_003541624.1| - 0.011 15.4 3.2 0.023 14.4 3.2 1.5 1 0 0 1 1 1 0 GrpE TIP49 PF06068.13 gi|294495131|ref|YP_003541624.1| - 0.013 14.7 0.1 0.079 12.1 0.0 2.1 2 0 0 2 2 2 0 TIP49 P-loop domain DUF815 PF05673.13 gi|294495131|ref|YP_003541624.1| - 0.02 14.1 0.0 0.046 12.9 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|294495131|ref|YP_003541624.1| - 0.026 14.0 0.1 0.12 11.9 0.0 2.0 2 1 0 2 2 2 0 P-loop containing dynein motor region DUF2075 PF09848.9 gi|294495131|ref|YP_003541624.1| - 0.027 13.7 0.3 0.08 12.2 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_18 PF13238.6 gi|294495131|ref|YP_003541624.1| - 0.028 14.9 0.7 0.36 11.4 0.0 2.7 3 1 0 3 3 3 0 AAA domain Mg_chelatase PF01078.21 gi|294495131|ref|YP_003541624.1| - 0.035 13.5 0.1 0.079 12.3 0.1 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|294495131|ref|YP_003541624.1| - 0.04 14.3 0.0 0.1 13.0 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_3 PF07726.11 gi|294495131|ref|YP_003541624.1| - 0.046 13.6 0.0 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF3450 PF11932.8 gi|294495131|ref|YP_003541624.1| - 0.064 12.5 1.9 0.11 11.7 1.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) IstB_IS21 PF01695.17 gi|294495131|ref|YP_003541624.1| - 0.07 12.9 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|294495131|ref|YP_003541624.1| - 0.075 12.3 0.0 0.16 11.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin COG6 PF06419.11 gi|294495131|ref|YP_003541624.1| - 0.076 11.2 4.5 0.15 10.2 4.5 1.4 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 AAA_14 PF13173.6 gi|294495131|ref|YP_003541624.1| - 0.092 12.8 0.0 0.25 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|294495131|ref|YP_003541624.1| - 0.12 12.2 0.9 1.8 8.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|294495131|ref|YP_003541624.1| - 0.14 12.3 0.0 0.37 10.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain ZapB PF06005.12 gi|294495131|ref|YP_003541624.1| - 0.17 12.4 9.1 0.37 11.3 9.1 1.5 1 0 0 1 1 1 0 Cell division protein ZapB HALZ PF02183.18 gi|294495131|ref|YP_003541624.1| - 0.4 10.9 7.1 0.09 13.0 2.0 2.2 2 0 0 2 2 2 0 Homeobox associated leucine zipper Taxilin PF09728.9 gi|294495131|ref|YP_003541624.1| - 1.2 8.2 12.9 0.18 11.0 8.8 1.6 2 0 0 2 2 2 0 Myosin-like coiled-coil protein Penicillinase_R PF03965.16 gi|294495132|ref|YP_003541625.1| - 0.00046 20.5 0.0 0.00079 19.8 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor DUF131 PF01998.17 gi|294495133|ref|YP_003541626.1| - 2.3e-10 39.9 5.6 2.3e-10 39.9 5.6 1.8 2 0 0 2 2 2 1 Protein of unknown function DUF131 DUF872 PF05915.12 gi|294495133|ref|YP_003541626.1| - 0.43 10.7 6.5 1.1 9.4 6.0 1.8 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) DUF3955 PF13127.6 gi|294495133|ref|YP_003541626.1| - 1.8 8.5 17.6 0.078 12.8 3.9 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF3955) DUF4282 PF14110.6 gi|294495133|ref|YP_003541626.1| - 2.1 9.1 10.0 4.5 8.1 10.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4282) DUF131 PF01998.17 gi|294495134|ref|YP_003541627.1| - 1.6e-20 72.5 0.8 1.6e-20 72.5 0.8 1.6 2 1 0 2 2 2 1 Protein of unknown function DUF131 UvrB_inter PF17757.1 gi|294495135|ref|YP_003541628.1| - 6.4e-33 112.8 0.2 2.1e-32 111.1 0.1 2.0 2 0 0 2 2 2 1 UvrB interaction domain UvrB PF12344.8 gi|294495135|ref|YP_003541628.1| - 5.2e-20 71.0 2.9 1.1e-19 70.0 2.9 1.6 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|294495135|ref|YP_003541628.1| - 1.1e-18 67.6 0.1 2.7e-18 66.3 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|294495135|ref|YP_003541628.1| - 5.7e-13 49.2 0.0 2.1e-11 44.1 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.19 gi|294495135|ref|YP_003541628.1| - 3.9e-09 36.0 5.1 3.9e-09 36.0 5.1 2.5 2 0 0 2 2 2 1 UvrB/uvrC motif DEAD PF00270.29 gi|294495135|ref|YP_003541628.1| - 0.0015 18.3 0.0 0.019 14.7 0.0 2.5 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|294495135|ref|YP_003541628.1| - 0.0015 18.2 0.0 0.052 13.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.17 gi|294495135|ref|YP_003541628.1| - 0.009 16.1 0.7 0.096 12.8 0.1 2.5 2 1 0 2 2 2 1 Helicase HerA, central domain MCR_C PF04609.12 gi|294495135|ref|YP_003541628.1| - 0.019 14.0 1.3 0.026 13.6 0.1 1.8 2 0 0 2 2 2 0 Methyl-coenzyme M reductase operon protein C Kinesin PF00225.23 gi|294495135|ref|YP_003541628.1| - 0.034 13.1 0.0 0.055 12.4 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain Microtub_bd PF16796.5 gi|294495135|ref|YP_003541628.1| - 0.04 13.9 0.0 0.13 12.2 0.0 1.8 1 0 0 1 1 1 0 Microtubule binding SWI2_SNF2 PF18766.1 gi|294495135|ref|YP_003541628.1| - 0.052 13.2 0.0 0.29 10.7 0.0 2.3 3 0 0 3 3 3 0 SWI2/SNF2 ATPase Flavi_DEAD PF07652.14 gi|294495135|ref|YP_003541628.1| - 0.052 13.5 0.6 1.3 9.0 0.0 3.1 4 0 0 4 4 4 0 Flavivirus DEAD domain AAA_19 PF13245.6 gi|294495135|ref|YP_003541628.1| - 1.1 9.6 3.3 28 5.0 0.0 3.1 3 2 0 3 3 3 0 AAA domain DNA_alkylation PF08713.11 gi|294495136|ref|YP_003541629.1| - 2.6e-29 102.5 1.0 3.3e-29 102.2 1.0 1.2 1 0 0 1 1 1 1 DNA alkylation repair enzyme KIND PF16474.5 gi|294495136|ref|YP_003541629.1| - 0.038 13.9 0.0 0.058 13.3 0.0 1.2 1 0 0 1 1 1 0 Kinase non-catalytic C-lobe domain SOUL PF04832.12 gi|294495137|ref|YP_003541630.1| - 8.2e-37 127.0 0.0 9.1e-37 126.8 0.0 1.0 1 0 0 1 1 1 1 SOUL heme-binding protein DDE_Tnp_1 PF01609.21 gi|294495139|ref|YP_003541632.1| - 1.6e-13 50.8 0.2 2.3e-13 50.3 0.2 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|294495139|ref|YP_003541632.1| - 0.13 12.3 0.1 0.26 11.3 0.1 1.5 1 0 0 1 1 1 0 Transposase domain (DUF772) WW_FCH_linker PF16623.5 gi|294495139|ref|YP_003541632.1| - 0.14 12.9 0.0 0.25 12.1 0.0 1.4 1 0 0 1 1 1 0 Unstructured linker region between on GAS7 protein CAP PF00188.26 gi|294495140|ref|YP_003541633.1| - 2.6e-08 34.8 0.0 5.8e-08 33.6 0.0 1.7 1 1 0 1 1 1 1 Cysteine-rich secretory protein family Sigma_reg_N PF13800.6 gi|294495140|ref|YP_003541633.1| - 0.24 11.7 0.9 1.9 8.9 0.1 2.6 3 0 0 3 3 3 0 Sigma factor regulator N-terminal DUF4234 PF14018.6 gi|294495141|ref|YP_003541634.1| - 2.6e-06 27.5 12.0 1.3e-05 25.2 12.0 2.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4234) Phage_integrase PF00589.22 gi|294495142|ref|YP_003541635.1| - 2.7e-25 89.1 0.0 3e-25 89.0 0.0 1.0 1 0 0 1 1 1 1 Phage integrase family Pox_D5 PF03288.16 gi|294495142|ref|YP_003541635.1| - 0.023 15.2 0.1 0.035 14.6 0.1 1.4 1 0 0 1 1 1 0 Poxvirus D5 protein-like SwrA PF17423.2 gi|294495142|ref|YP_003541635.1| - 0.073 13.1 0.1 0.16 12.0 0.1 1.6 1 0 0 1 1 1 0 Swarming motility protein S-layer PF07752.11 gi|294495144|ref|YP_003541637.1| - 1.3e-149 496.3 32.8 5.2e-78 261.7 16.7 2.3 2 0 0 2 2 2 2 S-layer protein OpuAC PF04069.12 gi|294495144|ref|YP_003541637.1| - 5.9e-67 226.0 5.5 5.9e-67 226.0 5.5 1.5 2 0 0 2 2 2 1 Substrate binding domain of ABC-type glycine betaine transport system Cadherin_3 PF16184.5 gi|294495144|ref|YP_003541637.1| - 0.024 14.6 0.2 0.27 11.3 0.1 2.9 2 1 0 2 2 2 0 Cadherin-like DUF2917 PF11142.8 gi|294495144|ref|YP_003541637.1| - 0.092 12.2 0.0 6.1 6.3 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2917) Regulator_TrmB PF11495.8 gi|294495147|ref|YP_003541640.1| - 0.11 11.7 0.0 2 7.5 0.0 2.5 2 1 1 3 3 3 0 Archaeal transcriptional regulator TrmB Flavodoxin_3 PF12641.7 gi|294495148|ref|YP_003541641.1| - 9.8e-21 74.1 0.0 1.2e-20 73.8 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_5 PF12724.7 gi|294495148|ref|YP_003541641.1| - 1.6e-12 47.9 0.0 2.2e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|294495148|ref|YP_003541641.1| - 8.2e-06 26.1 0.2 1.5e-05 25.2 0.0 1.5 2 0 0 2 2 2 1 Flavodoxin Flavodoxin_4 PF12682.7 gi|294495148|ref|YP_003541641.1| - 0.0012 18.6 0.6 0.072 12.8 0.1 2.3 1 1 1 2 2 2 2 Flavodoxin Fer4 PF00037.27 gi|294495149|ref|YP_003541642.1| - 1.6e-08 34.0 12.4 6.7e-06 25.7 2.8 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294495149|ref|YP_003541642.1| - 5e-07 30.2 19.1 1.5e-05 25.5 8.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294495149|ref|YP_003541642.1| - 1.4e-06 28.1 11.0 0.00063 19.7 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|294495149|ref|YP_003541642.1| - 2e-06 28.6 10.8 0.0019 19.1 11.0 2.4 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|294495149|ref|YP_003541642.1| - 1.9e-05 24.7 10.1 0.00019 21.5 0.8 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294495149|ref|YP_003541642.1| - 2.7e-05 24.0 8.5 0.0089 16.1 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|294495149|ref|YP_003541642.1| - 7.6e-05 23.1 3.2 0.0052 17.2 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294495149|ref|YP_003541642.1| - 9.8e-05 22.4 11.3 0.0013 18.8 12.1 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|294495149|ref|YP_003541642.1| - 0.00011 22.8 11.5 0.062 14.3 4.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294495149|ref|YP_003541642.1| - 0.00012 22.6 2.0 0.057 14.0 0.1 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294495149|ref|YP_003541642.1| - 0.00016 21.8 20.5 0.002 18.2 1.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294495149|ref|YP_003541642.1| - 0.00089 19.6 11.0 0.15 12.6 3.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|294495149|ref|YP_003541642.1| - 1.2 9.4 10.1 2.6e+02 1.8 10.3 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|294495149|ref|YP_003541642.1| - 5.9 7.5 10.4 4.8 7.8 4.8 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I DUF498 PF04430.14 gi|294495150|ref|YP_003541643.1| - 1.4e-10 41.2 0.0 1.5e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) CBS PF00571.28 gi|294495151|ref|YP_003541644.1| - 2.2e-21 76.0 3.2 6.8e-12 45.6 0.2 2.1 2 0 0 2 2 2 2 CBS domain CMD PF02627.20 gi|294495152|ref|YP_003541645.1| - 5e-17 61.7 0.2 6.1e-17 61.5 0.2 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PA26 PF04636.13 gi|294495152|ref|YP_003541645.1| - 0.019 13.9 0.0 0.02 13.8 0.0 1.1 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) SapB_1 PF05184.15 gi|294495152|ref|YP_003541645.1| - 0.076 13.1 0.2 0.19 11.8 0.2 1.7 1 0 0 1 1 1 0 Saposin-like type B, region 1 UXS1_N PF11803.8 gi|294495152|ref|YP_003541645.1| - 0.14 12.5 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 UDP-glucuronate decarboxylase N-terminal CPSase_L_D3 PF02787.19 gi|294495152|ref|YP_003541645.1| - 0.16 12.3 0.1 13 6.1 0.0 2.1 2 0 0 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DJ-1_PfpI PF01965.24 gi|294495153|ref|YP_003541646.1| - 5.8e-57 192.1 0.0 6.4e-57 191.9 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|294495153|ref|YP_003541646.1| - 0.0012 18.6 0.0 0.0014 18.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I ThiJ_like PF17124.5 gi|294495153|ref|YP_003541646.1| - 0.0046 16.7 0.0 0.012 15.3 0.0 1.7 1 1 1 2 2 2 1 ThiJ/PfpI family-like Peptidase_C26 PF07722.13 gi|294495153|ref|YP_003541646.1| - 0.023 14.4 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 GATase_5 PF13507.6 gi|294495153|ref|YP_003541646.1| - 0.037 13.1 0.0 0.049 12.7 0.0 1.1 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.14 gi|294495153|ref|YP_003541646.1| - 0.082 12.5 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Radical_SAM PF04055.21 gi|294495154|ref|YP_003541647.1| - 2.1e-11 44.5 0.4 4.6e-11 43.4 0.2 1.7 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|294495154|ref|YP_003541647.1| - 0.0013 19.0 0.0 0.003 17.8 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain VRR_NUC PF08774.11 gi|294495155|ref|YP_003541648.1| - 0.00096 19.2 0.0 0.0016 18.5 0.0 1.6 1 1 0 1 1 1 1 VRR-NUC domain NIR_SIR PF01077.22 gi|294495156|ref|YP_003541649.1| - 6.5e-30 103.7 0.1 1.7e-29 102.4 0.0 1.7 2 1 0 2 2 2 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|294495156|ref|YP_003541649.1| - 3.8e-13 49.1 0.0 6.9e-13 48.3 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|294495156|ref|YP_003541649.1| - 1.6e-10 40.3 12.7 3.3e-05 23.5 4.0 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|294495156|ref|YP_003541649.1| - 3.1e-07 30.5 25.4 9.2e-07 28.9 10.6 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|294495156|ref|YP_003541649.1| - 4e-06 27.3 8.6 4e-06 27.3 8.6 3.0 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294495156|ref|YP_003541649.1| - 2.1e-05 24.4 13.2 3.3e-05 23.8 3.1 3.7 4 1 0 4 4 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|294495156|ref|YP_003541649.1| - 0.00016 21.7 20.2 0.0024 18.0 1.3 3.2 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294495156|ref|YP_003541649.1| - 0.00082 19.4 11.9 0.00082 19.4 11.9 3.3 2 1 3 5 5 5 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|294495156|ref|YP_003541649.1| - 0.0011 19.1 6.2 0.0025 18.0 6.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294495156|ref|YP_003541649.1| - 0.017 15.6 18.2 0.12 12.9 3.2 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|294495156|ref|YP_003541649.1| - 0.23 12.2 0.3 0.23 12.2 0.3 4.2 5 0 0 5 5 5 0 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|294495156|ref|YP_003541649.1| - 0.46 11.5 19.8 0.64 11.0 1.9 3.5 2 2 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|294495156|ref|YP_003541649.1| - 3.7 8.2 16.3 3 8.5 0.3 3.6 3 1 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_2 PF12797.7 gi|294495156|ref|YP_003541649.1| - 4.2 7.7 21.5 0.077 13.1 2.0 3.5 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|294495156|ref|YP_003541649.1| - 6.2 7.7 13.7 4.3 8.2 1.1 2.9 3 0 0 3 3 2 0 4Fe-4S dicluster domain malic PF00390.19 gi|294495157|ref|YP_003541650.1| - 4.3e-33 114.6 0.6 1.2e-30 106.6 0.6 2.5 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|294495157|ref|YP_003541650.1| - 6.6e-25 87.8 6.9 2.6e-24 85.9 5.9 2.3 2 1 0 2 2 2 1 Malic enzyme, NAD binding domain ThiF PF00899.21 gi|294495157|ref|YP_003541650.1| - 0.0017 17.8 0.4 0.0037 16.6 0.4 1.5 1 0 0 1 1 1 1 ThiF family AlaDh_PNT_C PF01262.21 gi|294495157|ref|YP_003541650.1| - 0.0027 17.0 2.4 0.0076 15.6 2.4 1.7 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ELFV_dehydrog PF00208.21 gi|294495157|ref|YP_003541650.1| - 0.021 14.6 0.5 0.056 13.2 0.1 1.9 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase F420_oxidored PF03807.17 gi|294495157|ref|YP_003541650.1| - 0.047 14.3 5.1 0.08 13.5 0.5 3.2 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.19 gi|294495157|ref|YP_003541650.1| - 0.076 12.3 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Shikimate_DH PF01488.20 gi|294495157|ref|YP_003541650.1| - 0.078 13.0 0.2 0.22 11.6 0.1 1.8 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|294495157|ref|YP_003541650.1| - 0.087 12.2 1.9 0.7 9.2 0.7 2.7 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PGM_PMM_II PF02879.16 gi|294495157|ref|YP_003541650.1| - 0.098 13.3 0.3 1.2 9.8 0.0 2.8 2 1 1 3 3 3 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FKBP_C PF00254.28 gi|294495158|ref|YP_003541651.1| - 3.3e-24 85.0 0.5 4.4e-24 84.6 0.5 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Aconitase PF00330.20 gi|294495159|ref|YP_003541652.1| - 9.9e-173 575.4 0.0 1.2e-172 575.0 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|294495159|ref|YP_003541652.1| - 1.2e-44 151.8 0.0 2.2e-44 150.9 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain zf-CDGSH PF09360.10 gi|294495160|ref|YP_003541653.1| - 2.5e-30 104.5 5.8 7.7e-16 58.0 2.1 2.4 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.11 gi|294495160|ref|YP_003541653.1| - 1.6e-25 89.0 0.0 3.2e-25 88.0 0.0 1.5 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster CoA_binding_2 PF13380.6 gi|294495161|ref|YP_003541654.1| - 0.032 14.7 0.0 0.038 14.5 0.0 1.1 1 0 0 1 1 1 0 CoA binding domain Rhamnogal_lyase PF06045.11 gi|294495161|ref|YP_003541654.1| - 0.032 13.7 0.1 1.2 8.5 0.0 2.1 1 1 1 2 2 2 0 Rhamnogalacturonate lyase family Dus PF01207.17 gi|294495161|ref|YP_003541654.1| - 0.13 11.4 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) eIF-1a PF01176.19 gi|294495162|ref|YP_003541655.1| - 1.2e-12 47.4 0.3 1.5e-12 47.1 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 LAM_C PF12544.8 gi|294495163|ref|YP_003541656.1| - 3.8e-10 40.0 0.0 9.7e-10 38.7 0.0 1.7 2 0 0 2 2 2 1 Lysine-2,3-aminomutase Radical_SAM PF04055.21 gi|294495163|ref|YP_003541656.1| - 8.9e-08 32.7 0.4 2.2e-07 31.4 0.1 1.9 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|294495163|ref|YP_003541656.1| - 2.7e-05 24.3 1.0 0.0012 19.0 0.0 2.8 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|294495163|ref|YP_003541656.1| - 5.4e-05 23.5 0.0 0.00011 22.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain T2SSF PF00482.23 gi|294495163|ref|YP_003541656.1| - 0.23 11.4 0.0 0.41 10.6 0.0 1.4 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein F MarR PF01047.22 gi|294495164|ref|YP_003541657.1| - 3.6e-12 46.0 0.2 7.3e-12 45.0 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|294495164|ref|YP_003541657.1| - 1.4e-08 35.1 0.1 3.7e-08 33.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|294495164|ref|YP_003541657.1| - 7.4e-08 32.2 0.0 1.1e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|294495164|ref|YP_003541657.1| - 6.1e-06 26.3 2.1 7.3e-06 26.1 0.2 2.1 2 1 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|294495164|ref|YP_003541657.1| - 0.00061 19.3 1.1 0.0018 17.8 0.0 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding B-block_TFIIIC PF04182.12 gi|294495164|ref|YP_003541657.1| - 0.0023 18.1 0.0 0.0035 17.5 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC DUF4423 PF14394.6 gi|294495164|ref|YP_003541657.1| - 0.004 16.9 0.3 0.012 15.4 0.2 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) TrmB PF01978.19 gi|294495164|ref|YP_003541657.1| - 0.0069 16.3 0.2 0.017 15.0 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|294495164|ref|YP_003541657.1| - 0.014 15.2 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DnaJ-X PF14308.6 gi|294495164|ref|YP_003541657.1| - 0.015 14.8 0.0 0.39 10.1 0.0 2.1 1 1 1 2 2 2 0 X-domain of DnaJ-containing PadR PF03551.14 gi|294495164|ref|YP_003541657.1| - 0.016 15.1 0.1 0.039 13.9 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family Penicillinase_R PF03965.16 gi|294495164|ref|YP_003541657.1| - 0.021 15.2 0.1 0.035 14.4 0.1 1.4 1 1 0 1 1 1 0 Penicillinase repressor HTH_Crp_2 PF13545.6 gi|294495164|ref|YP_003541657.1| - 0.026 14.5 0.0 0.073 13.1 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HxlR PF01638.17 gi|294495164|ref|YP_003541657.1| - 0.027 14.3 0.0 0.081 12.8 0.0 1.8 2 0 0 2 2 2 0 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|294495164|ref|YP_003541657.1| - 0.049 13.8 0.0 0.08 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|294495164|ref|YP_003541657.1| - 0.052 13.5 0.1 0.12 12.4 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DUF2250 PF10007.9 gi|294495164|ref|YP_003541657.1| - 0.093 12.9 2.2 0.18 11.9 0.0 2.3 3 0 0 3 3 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF3231 PF11553.8 gi|294495164|ref|YP_003541657.1| - 0.32 10.6 2.8 0.23 11.1 0.3 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3231) MMPL PF03176.15 gi|294495165|ref|YP_003541658.1| - 1.7e-58 198.2 7.6 3.9e-30 104.9 0.1 2.1 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|294495165|ref|YP_003541658.1| - 4.2e-14 52.7 12.0 3e-09 36.9 0.7 2.7 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.19 gi|294495165|ref|YP_003541658.1| - 4.6e-13 47.8 22.2 2.1e-11 42.3 4.6 2.3 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family SecD_SecF PF02355.16 gi|294495165|ref|YP_003541658.1| - 4.9e-12 45.6 9.0 4.9e-12 45.6 9.0 2.3 2 0 0 2 2 2 1 Protein export membrane protein Patched PF02460.18 gi|294495165|ref|YP_003541658.1| - 1.1e-08 33.7 16.9 6.6e-05 21.2 4.2 2.1 2 0 0 2 2 2 2 Patched family DUF2367 PF10164.9 gi|294495165|ref|YP_003541658.1| - 0.085 13.4 0.0 0.46 11.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2367) Fzo_mitofusin PF04799.13 gi|294495165|ref|YP_003541658.1| - 0.4 10.2 5.3 0.32 10.5 3.1 1.9 2 0 0 2 2 2 0 fzo-like conserved region Sre PF03125.18 gi|294495165|ref|YP_003541658.1| - 0.89 8.6 14.5 0.44 9.6 0.1 3.4 4 0 0 4 4 4 0 C. elegans Sre G protein-coupled chemoreceptor Ndc1_Nup PF09531.10 gi|294495165|ref|YP_003541658.1| - 5.7 5.5 5.9 0.82 8.3 1.2 1.8 2 0 0 2 2 2 0 Nucleoporin protein Ndc1-Nup NPCBM_assoc PF10633.9 gi|294495166|ref|YP_003541659.1| - 0.00014 22.0 0.1 1.2 9.5 0.0 3.0 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|294495166|ref|YP_003541659.1| - 0.0027 17.9 0.1 0.084 13.1 0.0 2.5 2 1 0 2 2 2 1 CARDB Fn3-like PF14310.6 gi|294495166|ref|YP_003541659.1| - 0.035 14.2 0.0 0.18 12.0 0.0 2.2 2 0 0 2 2 2 0 Fibronectin type III-like domain Glyco_hydro2_C5 PF18565.1 gi|294495166|ref|YP_003541659.1| - 0.044 13.6 0.2 7.6 6.4 0.3 2.6 2 1 0 2 2 2 0 Glycoside hydrolase family 2 C-terminal domain 5 DUF11 PF01345.18 gi|294495166|ref|YP_003541659.1| - 0.067 13.5 1.8 0.67 10.3 0.7 2.7 2 1 0 2 2 2 0 Domain of unknown function DUF11 Sperm_Ag_HE2 PF05324.13 gi|294495166|ref|YP_003541659.1| - 0.29 11.6 0.5 0.67 10.5 0.5 1.6 1 0 0 1 1 1 0 Sperm antigen HE2 NPCBM_assoc PF10633.9 gi|294495167|ref|YP_003541660.1| - 1.1e-08 35.2 0.1 0.00061 20.0 0.0 3.0 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF824 PF05688.11 gi|294495167|ref|YP_003541660.1| - 0.038 13.8 0.2 0.5 10.2 0.1 2.9 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) YtkA PF13115.6 gi|294495167|ref|YP_003541660.1| - 0.062 13.9 2.7 0.28 11.8 0.1 2.8 3 0 0 3 3 3 0 YtkA-like DUF11 PF01345.18 gi|294495167|ref|YP_003541660.1| - 0.07 13.4 3.1 0.22 11.8 0.3 3.2 3 1 0 3 3 3 0 Domain of unknown function DUF11 GTP_EFTU PF00009.27 gi|294495168|ref|YP_003541661.1| - 2.7e-31 108.6 0.9 1.6e-30 106.1 0.9 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|294495168|ref|YP_003541661.1| - 3.9e-29 100.7 0.1 1.1e-28 99.3 0.1 1.8 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|294495168|ref|YP_003541661.1| - 3e-07 30.7 1.6 5.4e-07 29.9 0.3 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|294495168|ref|YP_003541661.1| - 0.00016 21.6 1.8 0.0015 18.5 0.2 2.2 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|294495168|ref|YP_003541661.1| - 0.00033 20.7 0.0 0.00093 19.3 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|294495168|ref|YP_003541661.1| - 0.0019 17.9 2.5 1.2 8.9 0.8 2.9 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1_Xtn PF16897.5 gi|294495168|ref|YP_003541661.1| - 0.0097 15.9 0.3 0.02 14.9 0.3 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Nop10p PF04135.12 gi|294495168|ref|YP_003541661.1| - 0.021 14.8 2.0 0.038 14.0 2.0 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family FeoB_N PF02421.18 gi|294495168|ref|YP_003541661.1| - 0.13 11.8 1.3 7.2 6.1 0.5 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B PIN_9 PF18477.1 gi|294495169|ref|YP_003541662.1| - 7e-42 142.4 0.0 7.9e-42 142.2 0.0 1.0 1 0 0 1 1 1 1 PIN like domain DUF188 PF02639.14 gi|294495169|ref|YP_003541662.1| - 0.019 14.7 0.1 0.025 14.2 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 SHS2_Rpb7-N PF03876.17 gi|294495170|ref|YP_003541663.1| - 1.5e-19 70.1 0.2 2.8e-19 69.3 0.2 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|294495170|ref|YP_003541663.1| - 1.5e-13 50.9 0.5 3.5e-13 49.7 0.5 1.6 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|294495170|ref|YP_003541663.1| - 0.0084 16.3 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit Rpc25 DUF826 PF05696.11 gi|294495170|ref|YP_003541663.1| - 0.033 14.3 1.8 0.045 13.8 0.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF826) Spt4 PF06093.13 gi|294495171|ref|YP_003541664.1| - 1.6e-14 53.7 0.1 2e-14 53.5 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger TF_Zn_Ribbon PF08271.12 gi|294495171|ref|YP_003541664.1| - 0.0066 15.9 0.5 0.069 12.7 0.0 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|294495171|ref|YP_003541664.1| - 0.015 14.7 0.2 0.015 14.7 0.2 1.5 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_4 PF14447.6 gi|294495171|ref|YP_003541664.1| - 0.036 13.9 1.0 0.05 13.5 1.0 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 Mu-like_Com PF10122.9 gi|294495171|ref|YP_003541664.1| - 0.33 10.5 3.5 5.1 6.6 3.5 2.1 1 1 0 1 1 1 0 Mu-like prophage protein Com NRDD PF13597.6 gi|294495171|ref|YP_003541664.1| - 0.42 9.3 1.0 0.5 9.1 1.0 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DUF359 PF04019.12 gi|294495172|ref|YP_003541665.1| - 6.1e-42 142.2 0.0 7.7e-42 141.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Ribosomal_S24e PF01282.19 gi|294495173|ref|YP_003541666.1| - 6.3e-26 90.1 0.0 7.9e-26 89.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|294495174|ref|YP_003541667.1| - 5.1e-23 81.0 3.1 5.6e-23 80.8 3.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a Ribosomal_L37e PF01907.19 gi|294495174|ref|YP_003541667.1| - 0.00015 21.9 0.5 0.00017 21.7 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e Nudix_N_2 PF14803.6 gi|294495174|ref|YP_003541667.1| - 0.00015 21.6 7.4 0.0011 18.8 4.4 2.6 1 1 1 2 2 2 2 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|294495174|ref|YP_003541667.1| - 0.00045 19.8 2.8 0.025 14.3 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|294495174|ref|YP_003541667.1| - 0.0011 19.0 0.4 0.0016 18.4 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon IBR PF01485.21 gi|294495174|ref|YP_003541667.1| - 0.0013 19.0 0.2 0.0013 19.0 0.2 1.1 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain MqsA_antitoxin PF15731.5 gi|294495174|ref|YP_003541667.1| - 0.0019 18.3 0.2 0.0022 18.1 0.2 1.2 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA GFA PF04828.14 gi|294495174|ref|YP_003541667.1| - 0.0025 18.1 1.2 0.015 15.6 1.2 1.8 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme OrfB_Zn_ribbon PF07282.11 gi|294495174|ref|YP_003541667.1| - 0.004 17.1 0.4 0.0044 16.9 0.4 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.16 gi|294495174|ref|YP_003541667.1| - 0.0045 16.8 2.6 0.011 15.5 2.6 1.6 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|294495174|ref|YP_003541667.1| - 0.0054 16.4 7.5 0.062 13.0 7.5 2.1 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain C1_1 PF00130.22 gi|294495174|ref|YP_003541667.1| - 0.012 15.4 0.5 0.015 15.2 0.5 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF1451 PF07295.11 gi|294495174|ref|YP_003541667.1| - 0.015 15.3 0.8 0.015 15.3 0.8 1.0 1 0 0 1 1 1 0 Zinc-ribbon containing domain Zn_Tnp_IS1595 PF12760.7 gi|294495174|ref|YP_003541667.1| - 0.024 14.6 2.9 0.04 13.9 2.9 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|294495174|ref|YP_003541667.1| - 0.041 14.0 5.0 0.066 13.4 0.5 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.19 gi|294495174|ref|YP_003541667.1| - 0.042 13.9 0.4 0.043 13.8 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_11 PF11682.8 gi|294495174|ref|YP_003541667.1| - 0.045 13.8 0.8 0.059 13.4 0.1 1.6 1 1 1 2 2 2 0 Probable zinc-ribbon Lar_restr_allev PF14354.6 gi|294495174|ref|YP_003541667.1| - 0.069 13.5 1.3 0.11 12.9 1.3 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|294495174|ref|YP_003541667.1| - 0.076 12.4 6.2 0.35 10.3 0.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Baculo_ME53 PF06061.11 gi|294495174|ref|YP_003541667.1| - 0.12 11.6 0.5 0.12 11.6 0.5 1.0 1 0 0 1 1 1 0 Baculoviridae ME53 zinc_ribbon_13 PF09855.9 gi|294495174|ref|YP_003541667.1| - 0.19 11.9 3.6 0.44 10.8 0.6 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf_C2H2_10 PF18414.1 gi|294495174|ref|YP_003541667.1| - 0.28 10.8 1.2 14 5.3 0.1 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger TF_Zn_Ribbon PF08271.12 gi|294495174|ref|YP_003541667.1| - 0.28 10.7 4.6 0.69 9.5 4.5 1.7 1 1 1 2 2 2 0 TFIIB zinc-binding zf_UBZ PF18439.1 gi|294495174|ref|YP_003541667.1| - 2.1 8.0 7.8 1.2 8.8 1.6 2.5 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Response_reg PF00072.24 gi|294495175|ref|YP_003541668.1| - 3e-20 72.5 0.3 3.4e-20 72.3 0.3 1.0 1 0 0 1 1 1 1 Response regulator receiver domain HisKA_2 PF07568.12 gi|294495176|ref|YP_003541669.1| - 4.6e-29 100.3 1.7 1.8e-28 98.4 1.7 2.1 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 gi|294495176|ref|YP_003541669.1| - 1.6e-21 77.3 1.1 3.6e-21 76.1 1.1 1.6 1 0 0 1 1 1 1 Cache domain PAS_3 PF08447.12 gi|294495176|ref|YP_003541669.1| - 4.4e-17 62.1 0.0 3.9e-16 59.1 0.0 2.5 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|294495176|ref|YP_003541669.1| - 3.4e-10 40.4 0.5 1.3e-09 38.6 0.5 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2140 PF09911.9 gi|294495176|ref|YP_003541669.1| - 0.00053 19.6 0.4 0.00053 19.6 0.4 2.6 3 0 0 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2140) HWE_HK PF07536.14 gi|294495176|ref|YP_003541669.1| - 0.00075 20.2 0.1 0.0021 18.7 0.1 1.8 1 0 0 1 1 1 1 HWE histidine kinase sCache_2 PF17200.4 gi|294495176|ref|YP_003541669.1| - 0.019 14.8 0.7 0.041 13.7 0.1 1.9 2 0 0 2 2 2 0 Single Cache domain 2 PAS_9 PF13426.7 gi|294495176|ref|YP_003541669.1| - 0.02 15.1 0.1 0.1 12.9 0.0 2.3 1 1 1 2 2 2 0 PAS domain HATPase_c_3 PF13589.6 gi|294495176|ref|YP_003541669.1| - 0.022 14.6 0.2 0.064 13.1 0.2 1.8 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|294495176|ref|YP_003541669.1| - 0.024 14.6 0.0 0.17 11.9 0.0 2.4 2 0 0 2 2 2 0 PAS fold PAS_11 PF14598.6 gi|294495176|ref|YP_003541669.1| - 0.04 14.1 0.1 0.29 11.3 0.0 2.4 3 0 0 3 3 3 0 PAS domain DUF2304 PF10066.9 gi|294495176|ref|YP_003541669.1| - 0.14 12.4 0.2 0.14 12.4 0.2 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) BORCS8 PF10167.9 gi|294495176|ref|YP_003541669.1| - 0.4 10.6 4.0 0.53 10.2 2.1 2.2 2 1 0 2 2 2 0 BLOC-1-related complex sub-unit 8 DUF1724 PF08350.10 gi|294495177|ref|YP_003541670.1| - 4.8e-23 81.1 0.6 1e-22 80.0 0.6 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|294495177|ref|YP_003541670.1| - 0.00043 20.1 0.3 0.00088 19.1 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|294495177|ref|YP_003541670.1| - 0.075 13.0 0.4 0.16 11.9 0.4 1.5 1 0 0 1 1 1 0 HTH domain HxlR PF01638.17 gi|294495177|ref|YP_003541670.1| - 0.12 12.3 0.9 0.41 10.5 0.4 2.1 2 2 0 2 2 2 0 HxlR-like helix-turn-helix DUF1479 PF07350.12 gi|294495177|ref|YP_003541670.1| - 0.12 11.1 0.0 0.17 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1479) B12-binding PF02310.19 gi|294495178|ref|YP_003541671.1| - 1.2e-25 89.9 0.3 1.8e-25 89.3 0.3 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|294495178|ref|YP_003541671.1| - 3.4e-20 72.2 1.5 9.6e-20 70.8 0.7 2.1 2 0 0 2 2 2 1 B12 binding domain AA_permease_2 PF13520.6 gi|294495179|ref|YP_003541672.1| - 2.5e-62 211.1 46.9 3e-62 210.8 46.9 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|294495179|ref|YP_003541672.1| - 9.9e-11 40.9 39.5 2e-10 39.9 38.8 1.8 1 1 0 1 1 1 1 Amino acid permease Stevor PF17410.2 gi|294495179|ref|YP_003541672.1| - 0.33 10.5 0.7 0.6 9.6 0.7 1.4 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame Phage_holin_5_2 PF16079.5 gi|294495180|ref|YP_003541673.1| - 0.015 15.6 0.0 0.018 15.3 0.0 1.1 1 0 0 1 1 1 0 Phage holin family Hol44, in holin superfamily V TrbC PF04956.13 gi|294495180|ref|YP_003541673.1| - 0.021 15.0 0.3 0.023 14.9 0.3 1.1 1 0 0 1 1 1 0 TrbC/VIRB2 family DUF3382 PF11862.8 gi|294495180|ref|YP_003541673.1| - 0.061 13.6 0.9 0.065 13.5 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3382) PetL PF05115.14 gi|294495180|ref|YP_003541673.1| - 0.12 12.3 3.8 0.12 12.3 3.8 1.6 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit VI (PetL) Peptidase_U32 PF01136.19 gi|294495181|ref|YP_003541674.1| - 2.1e-80 269.2 0.1 5.2e-80 267.9 0.0 1.6 2 0 0 2 2 2 1 Peptidase family U32 Peripla_BP_6 PF13458.6 gi|294495181|ref|YP_003541674.1| - 0.0062 16.2 0.0 0.0098 15.6 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein HET-S PF17108.5 gi|294495181|ref|YP_003541674.1| - 0.013 15.2 0.0 0.046 13.5 0.0 2.0 1 0 0 1 1 1 0 N-terminal small S protein of HET, non-prionic tRNA_anti_2 PF13742.6 gi|294495181|ref|YP_003541674.1| - 0.09 13.0 0.2 1.4 9.2 0.0 2.8 3 1 0 3 3 3 0 OB-fold nucleic acid binding domain dCMP_cyt_deam_1 PF00383.23 gi|294495182|ref|YP_003541675.1| - 5.1e-21 74.5 0.0 6.3e-21 74.2 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|294495182|ref|YP_003541675.1| - 5.9e-20 71.4 0.0 7.6e-20 71.1 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 gi|294495182|ref|YP_003541675.1| - 0.0013 18.8 0.2 0.0029 17.7 0.3 1.5 1 1 1 2 2 2 1 Bd3614-like deaminase SNAD4 PF18750.1 gi|294495182|ref|YP_003541675.1| - 0.024 14.7 0.0 0.07 13.3 0.0 1.7 2 0 0 2 2 2 0 Secreted Novel AID/APOBEC-like Deaminase 4 Topo-VIb_trans PF09239.11 gi|294495183|ref|YP_003541676.1| - 1.4e-67 226.4 0.0 2.5e-67 225.7 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|294495183|ref|YP_003541676.1| - 1.7e-38 131.3 0.0 3.5e-38 130.3 0.0 1.6 1 0 0 1 1 1 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|294495183|ref|YP_003541676.1| - 7.7e-10 39.3 0.0 1.4e-09 38.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|294495183|ref|YP_003541676.1| - 3.6e-07 30.1 0.0 6.7e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|294495183|ref|YP_003541676.1| - 0.005 15.7 0.4 0.0091 14.8 0.0 1.6 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) HATPase_c_5 PF14501.6 gi|294495183|ref|YP_003541676.1| - 0.14 12.1 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 GHKL domain TP6A_N PF04406.14 gi|294495184|ref|YP_003541677.1| - 8.1e-13 48.2 0.1 1.5e-12 47.3 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Peptidase_M22 PF00814.25 gi|294495186|ref|YP_003541679.1| - 1.8e-88 296.8 0.0 2.1e-88 296.6 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family Carbam_trans_N PF02543.15 gi|294495186|ref|YP_003541679.1| - 0.1 12.2 0.0 0.45 10.1 0.0 1.9 2 0 0 2 2 2 0 Carbamoyltransferase N-terminus RIO1 PF01163.22 gi|294495187|ref|YP_003541680.1| - 7.3e-10 38.8 0.0 1.2e-09 38.1 0.0 1.4 1 1 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|294495187|ref|YP_003541680.1| - 1e-08 34.8 0.2 2.5e-06 27.0 0.0 2.2 1 1 1 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|294495187|ref|YP_003541680.1| - 1.1e-08 35.4 1.1 0.00023 21.1 0.2 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|294495187|ref|YP_003541680.1| - 2e-05 24.1 0.0 3.2e-05 23.4 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.11 gi|294495187|ref|YP_003541680.1| - 0.0052 16.4 0.0 0.008 15.8 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.17 gi|294495187|ref|YP_003541680.1| - 0.03 13.6 0.0 0.031 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein tyrosine kinase Pkinase_fungal PF17667.1 gi|294495187|ref|YP_003541680.1| - 0.085 11.6 0.0 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 Fungal protein kinase Ham1p_like PF01725.16 gi|294495188|ref|YP_003541681.1| - 2.1e-55 187.5 0.0 2.4e-55 187.4 0.0 1.0 1 0 0 1 1 1 1 Ham1 family MTH865 PF07747.11 gi|294495188|ref|YP_003541681.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 MTH865-like family Cyclase PF04199.13 gi|294495189|ref|YP_003541682.1| - 2.4e-06 27.8 0.0 3e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase PHP PF02811.19 gi|294495190|ref|YP_003541683.1| - 3.3e-10 40.5 0.0 4.7e-10 40.0 0.0 1.4 1 1 0 1 1 1 1 PHP domain RNase_P_p30 PF01876.16 gi|294495190|ref|YP_003541683.1| - 5.4e-06 26.0 0.0 3.5e-05 23.4 0.0 2.0 1 1 0 1 1 1 1 RNase P subunit p30 DUF211 PF02680.14 gi|294495191|ref|YP_003541684.1| - 2.2e-39 133.5 1.9 2.5e-39 133.3 1.9 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 FtsJ PF01728.19 gi|294495192|ref|YP_003541685.1| - 4.6e-58 196.2 0.0 6.4e-58 195.8 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|294495192|ref|YP_003541685.1| - 1.2e-10 41.3 0.6 2.3e-10 40.3 0.6 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_23 PF13489.6 gi|294495192|ref|YP_003541685.1| - 1.1e-05 25.4 0.0 2.6e-05 24.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|294495192|ref|YP_003541685.1| - 7.7e-05 22.5 0.0 0.0033 17.2 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|294495192|ref|YP_003541685.1| - 0.012 16.3 0.1 0.26 12.0 0.0 2.7 1 1 1 2 2 2 0 Methyltransferase domain YfhE PF14152.6 gi|294495193|ref|YP_003541686.1| - 0.12 12.5 0.1 0.25 11.5 0.1 1.5 1 0 0 1 1 1 0 YfhE-like protein DFP PF04127.15 gi|294495194|ref|YP_003541687.1| - 3.2e-47 160.8 0.4 7.9e-46 156.2 0.0 2.1 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|294495194|ref|YP_003541687.1| - 7.6e-34 116.7 1.2 1.1e-33 116.2 1.2 1.3 1 0 0 1 1 1 1 Flavoprotein NAD_binding_10 PF13460.6 gi|294495194|ref|YP_003541687.1| - 0.002 18.0 0.0 0.0053 16.7 0.0 1.7 1 0 0 1 1 1 1 NAD(P)H-binding Glyco_transf_4 PF13439.6 gi|294495194|ref|YP_003541687.1| - 0.14 12.2 0.1 6.9 6.6 0.3 2.6 3 0 0 3 3 3 0 Glycosyltransferase Family 4 GHMP_kinases_N PF00288.26 gi|294495195|ref|YP_003541688.1| - 6.1e-11 42.4 2.6 1.1e-10 41.6 2.6 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|294495195|ref|YP_003541688.1| - 0.00053 20.3 0.1 0.00053 20.3 0.1 2.2 2 2 1 3 3 3 1 GHMP kinases C terminal EamA PF00892.20 gi|294495196|ref|YP_003541689.1| - 4.9e-17 62.4 38.7 1.9e-08 34.6 13.5 2.0 2 0 0 2 2 2 2 EamA-like transporter family URO-D PF01208.17 gi|294495197|ref|YP_003541690.1| - 7.8e-81 271.9 0.0 8.8e-81 271.7 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) PPS_PS PF02006.16 gi|294495198|ref|YP_003541691.1| - 2.5e-73 245.4 0.1 3.2e-73 245.0 0.1 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase HD PF01966.22 gi|294495199|ref|YP_003541692.1| - 1.7e-13 50.9 0.2 2.7e-13 50.2 0.2 1.3 1 0 0 1 1 1 1 HD domain Rif1_N PF12231.8 gi|294495199|ref|YP_003541692.1| - 0.054 12.5 0.0 2.4 7.0 0.0 2.0 2 0 0 2 2 2 0 Rap1-interacting factor 1 N terminal Amidohydro_1 PF01979.20 gi|294495200|ref|YP_003541693.1| - 3.7e-73 246.8 0.9 4.9e-73 246.4 0.9 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|294495200|ref|YP_003541693.1| - 1.9e-20 73.8 1.2 3.1e-14 53.3 0.1 2.2 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|294495200|ref|YP_003541693.1| - 0.00022 20.6 0.1 0.00039 19.8 0.1 1.4 1 1 0 1 1 1 1 Adenosine/AMP deaminase S-AdoMet_synt_C PF02773.16 gi|294495201|ref|YP_003541694.1| - 4.6e-63 211.3 0.2 1.3e-62 209.8 0.0 1.8 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, C-terminal domain S-AdoMet_synt_M PF02772.16 gi|294495201|ref|YP_003541694.1| - 4.4e-38 130.2 0.0 9.7e-38 129.1 0.0 1.6 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, central domain S-AdoMet_synt_N PF00438.20 gi|294495201|ref|YP_003541694.1| - 1.3e-35 122.0 0.9 2.2e-35 121.3 0.2 1.7 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, N-terminal domain AdoMet_Synthase PF01941.19 gi|294495201|ref|YP_003541694.1| - 0.0018 17.1 0.1 0.049 12.4 0.0 2.3 2 0 0 2 2 2 1 S-adenosylmethionine synthetase (AdoMet synthetase) Phage_int_SAM_2 PF12834.7 gi|294495201|ref|YP_003541694.1| - 0.12 13.0 0.0 0.24 12.1 0.0 1.4 1 0 0 1 1 1 0 Phage integrase, N-terminal AdoHcyase PF05221.17 gi|294495202|ref|YP_003541695.1| - 1.2e-147 490.9 0.1 1.3e-147 490.7 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|294495202|ref|YP_003541695.1| - 1.2e-77 259.6 3.1 1.7e-77 259.0 3.1 1.2 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|294495202|ref|YP_003541695.1| - 0.00035 20.0 0.1 0.00061 19.2 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|294495202|ref|YP_003541695.1| - 0.00045 19.8 0.3 0.00083 19.0 0.3 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|294495202|ref|YP_003541695.1| - 0.0029 17.9 0.1 0.0063 16.8 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain 3HCDH_N PF02737.18 gi|294495202|ref|YP_003541695.1| - 0.13 12.1 0.2 0.31 10.9 0.2 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_25 PF13649.6 gi|294495203|ref|YP_003541696.1| - 1.6e-15 57.6 0.1 3.6e-15 56.4 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|294495203|ref|YP_003541696.1| - 1.3e-10 41.2 0.0 1.6e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|294495203|ref|YP_003541696.1| - 4.9e-10 39.9 0.1 8.3e-10 39.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|294495203|ref|YP_003541696.1| - 2.1e-08 34.8 0.1 3.9e-08 33.9 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|294495203|ref|YP_003541696.1| - 3.6e-07 30.2 0.0 4.1e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|294495203|ref|YP_003541696.1| - 1.2e-05 24.8 0.0 1.3e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|294495203|ref|YP_003541696.1| - 0.0019 17.6 0.0 0.0031 17.0 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|294495203|ref|YP_003541696.1| - 0.0084 15.7 0.1 0.014 15.0 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CheR PF01739.18 gi|294495203|ref|YP_003541696.1| - 0.046 13.2 0.0 0.11 12.0 0.0 1.6 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain PCMT PF01135.19 gi|294495203|ref|YP_003541696.1| - 0.063 13.0 0.0 0.098 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|294495204|ref|YP_003541697.1| - 2.3e-21 76.2 0.0 4.1e-21 75.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|294495204|ref|YP_003541697.1| - 4.7e-17 62.5 0.0 1.2e-16 61.2 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|294495204|ref|YP_003541697.1| - 2e-15 56.9 0.0 5.1e-15 55.6 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain CMAS PF02353.20 gi|294495204|ref|YP_003541697.1| - 8e-15 54.8 0.3 1.2e-14 54.3 0.3 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|294495204|ref|YP_003541697.1| - 3.6e-12 46.4 0.0 4.3e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|294495204|ref|YP_003541697.1| - 4.3e-09 37.0 0.1 1.2e-08 35.6 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|294495204|ref|YP_003541697.1| - 9.4e-08 31.7 0.0 1.4e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_29 PF03141.16 gi|294495204|ref|YP_003541697.1| - 2.2e-06 26.5 0.0 3e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_2 PF00891.18 gi|294495204|ref|YP_003541697.1| - 4.7e-05 22.8 0.0 7.1e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain MetW PF07021.12 gi|294495204|ref|YP_003541697.1| - 7.9e-05 22.3 0.0 0.00013 21.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|294495204|ref|YP_003541697.1| - 0.00046 19.2 0.0 0.00096 18.2 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.6 gi|294495204|ref|YP_003541697.1| - 0.0047 16.9 0.1 0.01 15.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.19 gi|294495204|ref|YP_003541697.1| - 0.014 15.5 0.0 0.035 14.2 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase TehB PF03848.14 gi|294495204|ref|YP_003541697.1| - 0.023 14.1 0.0 0.042 13.3 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB MTS PF05175.14 gi|294495204|ref|YP_003541697.1| - 0.025 14.1 0.0 0.055 13.0 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|294495204|ref|YP_003541697.1| - 0.029 14.2 0.0 0.2 11.5 0.0 2.0 1 1 0 1 1 1 0 Hypothetical methyltransferase PCMT PF01135.19 gi|294495204|ref|YP_003541697.1| - 0.044 13.5 0.0 0.077 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0146 PF03686.13 gi|294495204|ref|YP_003541697.1| - 0.1 12.5 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) RrnaAD PF00398.20 gi|294495204|ref|YP_003541697.1| - 0.16 11.0 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PfkB PF00294.24 gi|294495205|ref|YP_003541698.1| - 9.4e-40 136.8 0.0 1.2e-39 136.4 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase AdoHcyase PF05221.17 gi|294495206|ref|YP_003541699.1| - 7.2e-58 196.1 0.0 5.3e-29 101.3 0.1 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|294495206|ref|YP_003541699.1| - 1.8e-48 164.6 0.6 1.8e-48 164.6 0.6 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|294495206|ref|YP_003541699.1| - 8.5e-09 35.0 0.1 1.5e-08 34.2 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|294495206|ref|YP_003541699.1| - 4.3e-06 26.4 0.0 7.9e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|294495206|ref|YP_003541699.1| - 0.0042 16.4 0.7 0.012 14.9 0.7 1.8 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain PsaD PF02531.16 gi|294495206|ref|YP_003541699.1| - 0.16 11.5 0.0 0.32 10.5 0.0 1.4 1 0 0 1 1 1 0 PsaD RNA_pol_Rpb5_C PF01191.19 gi|294495207|ref|YP_003541700.1| - 3.1e-30 103.8 0.5 3.4e-30 103.7 0.5 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.15 gi|294495208|ref|YP_003541701.1| - 1.3e-55 188.1 0.1 1.6e-55 187.7 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|294495208|ref|YP_003541701.1| - 3.1e-26 92.2 0.0 4.6e-26 91.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|294495208|ref|YP_003541701.1| - 4.9e-26 90.7 0.0 8.9e-26 89.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_6 PF00562.28 gi|294495209|ref|YP_003541702.1| - 4e-127 424.5 0.0 4.9e-127 424.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|294495209|ref|YP_003541702.1| - 3.7e-31 107.4 0.1 7.4e-31 106.4 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|294495209|ref|YP_003541702.1| - 7.5e-19 67.8 0.6 1.5e-18 66.8 0.6 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|294495209|ref|YP_003541702.1| - 5.4e-10 39.7 3.2 1.9e-09 38.0 3.2 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 Nudix_N_2 PF14803.6 gi|294495209|ref|YP_003541702.1| - 0.0032 17.3 0.1 1.7 8.6 0.0 2.8 2 0 0 2 2 2 2 Nudix N-terminal zf-NADH-PPase PF09297.11 gi|294495209|ref|YP_003541702.1| - 0.03 14.0 1.0 0.16 11.6 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF1451 PF07295.11 gi|294495209|ref|YP_003541702.1| - 0.067 13.2 0.4 0.12 12.4 0.4 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain NOB1_Zn_bind PF08772.11 gi|294495209|ref|YP_003541702.1| - 0.19 11.9 0.3 0.42 10.8 0.3 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.6 gi|294495209|ref|YP_003541702.1| - 0.44 10.3 2.1 1.8 8.4 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|294495209|ref|YP_003541702.1| - 1.9 8.1 5.9 19 4.9 5.6 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding RNA_pol_Rpb1_1 PF04997.12 gi|294495210|ref|YP_003541703.1| - 2.3e-103 345.8 0.0 3.9e-103 345.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|294495210|ref|YP_003541703.1| - 6.8e-69 231.3 0.2 1.1e-68 230.7 0.2 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|294495210|ref|YP_003541703.1| - 3.7e-34 117.9 0.0 6.8e-34 117.1 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|294495210|ref|YP_003541703.1| - 3.9e-31 107.2 0.0 9.1e-31 106.0 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|294495210|ref|YP_003541703.1| - 4e-28 98.6 0.1 7e-28 97.8 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_5 PF04998.17 gi|294495211|ref|YP_003541704.1| - 1.7e-54 185.0 0.7 3.3e-54 184.1 0.7 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Ribosomal_L7Ae PF01248.26 gi|294495212|ref|YP_003541705.1| - 5.4e-11 42.1 0.1 7.4e-11 41.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.17 gi|294495213|ref|YP_003541706.1| - 3.5e-20 71.6 1.4 1.5e-12 47.1 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|294495213|ref|YP_003541706.1| - 5e-12 45.7 2.5 4.9e-10 39.4 0.2 2.4 2 0 0 2 2 2 2 NusA-like KH domain KH_4 PF13083.6 gi|294495213|ref|YP_003541706.1| - 3.3e-08 33.3 1.6 0.00021 21.1 0.0 2.5 2 1 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|294495213|ref|YP_003541706.1| - 9.2e-05 22.2 1.5 0.13 12.1 0.1 2.4 2 0 0 2 2 2 2 KH domain Toxin_15 PF07906.13 gi|294495213|ref|YP_003541706.1| - 0.019 14.6 0.0 0.81 9.2 0.0 2.1 1 1 1 2 2 2 0 ShET2 enterotoxin, N-terminal region Ribosom_S12_S23 PF00164.25 gi|294495214|ref|YP_003541707.1| - 1.2e-45 153.8 0.4 1.6e-45 153.4 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|294495215|ref|YP_003541708.1| - 7.1e-36 123.1 0.8 8.5e-36 122.8 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.27 gi|294495216|ref|YP_003541709.1| - 2.1e-64 216.7 0.1 3.3e-64 216.0 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|294495216|ref|YP_003541709.1| - 4.3e-31 107.2 0.0 1.3e-30 105.7 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|294495216|ref|YP_003541709.1| - 3.9e-24 84.5 2.2 7.6e-24 83.6 0.6 2.2 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|294495216|ref|YP_003541709.1| - 2.3e-23 82.0 0.0 7e-23 80.5 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|294495216|ref|YP_003541709.1| - 2.7e-14 53.3 1.4 8.9e-14 51.6 1.4 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|294495216|ref|YP_003541709.1| - 8.9e-05 22.6 0.0 0.00023 21.2 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|294495216|ref|YP_003541709.1| - 0.0026 17.6 0.0 0.0092 15.8 0.0 1.9 2 0 0 2 2 2 1 Class II release factor RF3, C-terminal domain DUF4473 PF14747.6 gi|294495216|ref|YP_003541709.1| - 0.11 13.1 0.0 0.44 11.1 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4473) Ras PF00071.22 gi|294495216|ref|YP_003541709.1| - 0.15 11.7 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 Ras family GTP_EFTU PF00009.27 gi|294495217|ref|YP_003541710.1| - 2.2e-57 193.7 0.1 2.7e-57 193.5 0.1 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|294495217|ref|YP_003541710.1| - 1.9e-36 124.8 0.6 4e-36 123.7 0.1 1.8 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|294495217|ref|YP_003541710.1| - 6.4e-16 58.5 0.6 1.7e-15 57.2 0.6 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|294495217|ref|YP_003541710.1| - 6e-07 29.5 0.0 8.8e-06 25.8 0.0 2.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.22 gi|294495217|ref|YP_003541710.1| - 0.00057 19.5 0.4 0.0039 16.8 0.2 2.1 2 0 0 2 2 2 1 Ras family Dynamin_N PF00350.23 gi|294495217|ref|YP_003541710.1| - 0.00092 19.3 0.0 0.62 10.1 0.0 2.4 1 1 0 2 2 2 2 Dynamin family Roc PF08477.13 gi|294495217|ref|YP_003541710.1| - 0.0031 17.7 0.2 1 9.6 0.1 2.4 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase FGGY_C PF02782.16 gi|294495217|ref|YP_003541710.1| - 0.0061 16.3 0.0 0.024 14.3 0.0 1.8 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain Gtr1_RagA PF04670.12 gi|294495217|ref|YP_003541710.1| - 0.0076 15.6 0.0 0.018 14.4 0.0 1.7 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region FeoB_N PF02421.18 gi|294495217|ref|YP_003541710.1| - 0.022 14.3 0.1 0.52 9.8 0.1 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B GTP_EFTU_D4 PF14578.6 gi|294495217|ref|YP_003541710.1| - 0.027 14.3 0.6 0.071 13.0 0.6 1.7 1 0 0 1 1 1 0 Elongation factor Tu domain 4 SRPRB PF09439.10 gi|294495217|ref|YP_003541710.1| - 0.069 12.6 0.1 0.43 10.0 0.0 2.3 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit Ribosomal_S10 PF00338.22 gi|294495218|ref|YP_003541711.1| - 7.5e-26 90.2 0.0 8.3e-26 90.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e TrmB PF01978.19 gi|294495219|ref|YP_003541712.1| - 1.6e-06 27.9 0.1 1.9e-06 27.7 0.1 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|294495219|ref|YP_003541712.1| - 1.9e-06 28.1 0.0 2.3e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|294495219|ref|YP_003541712.1| - 1.9e-05 24.8 0.1 2.2e-05 24.5 0.1 1.1 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|294495219|ref|YP_003541712.1| - 3.7e-05 23.5 0.0 3.9e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|294495219|ref|YP_003541712.1| - 0.00043 19.8 0.0 0.00052 19.5 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|294495219|ref|YP_003541712.1| - 0.0013 19.2 0.0 0.0013 19.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|294495219|ref|YP_003541712.1| - 0.0017 18.3 0.0 0.0021 18.1 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|294495219|ref|YP_003541712.1| - 0.002 18.0 0.0 0.0024 17.8 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|294495219|ref|YP_003541712.1| - 0.004 17.0 0.0 0.0045 16.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TBPIP PF07106.13 gi|294495219|ref|YP_003541712.1| - 0.0056 16.6 0.1 0.0075 16.2 0.1 1.2 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain HTH_11 PF08279.12 gi|294495219|ref|YP_003541712.1| - 0.028 14.4 0.0 0.033 14.1 0.0 1.1 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.6 gi|294495219|ref|YP_003541712.1| - 0.037 14.0 0.0 0.038 14.0 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Ribosomal_S13_N PF08069.12 gi|294495219|ref|YP_003541712.1| - 0.058 13.4 0.1 0.076 13.1 0.1 1.3 1 0 0 1 1 1 0 Ribosomal S13/S15 N-terminal domain PPR_3 PF13812.6 gi|294495219|ref|YP_003541712.1| - 0.075 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Pentatricopeptide repeat domain z-alpha PF02295.17 gi|294495219|ref|YP_003541712.1| - 0.082 13.0 0.1 0.098 12.7 0.1 1.1 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HrcA_DNA-bdg PF03444.15 gi|294495219|ref|YP_003541712.1| - 0.098 12.3 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_IclR PF09339.10 gi|294495219|ref|YP_003541712.1| - 0.23 11.3 0.0 0.28 11.0 0.0 1.1 1 0 0 1 1 1 0 IclR helix-turn-helix domain POR_N PF01855.19 gi|294495222|ref|YP_003541715.1| - 1.6e-60 204.8 0.4 4.1e-60 203.4 0.1 1.9 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|294495222|ref|YP_003541715.1| - 2.7e-37 128.5 0.5 6.8e-37 127.2 0.0 1.9 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|294495222|ref|YP_003541715.1| - 1e-05 25.2 0.5 1.7e-05 24.5 0.5 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.20 gi|294495222|ref|YP_003541715.1| - 0.0014 18.5 0.0 0.004 17.0 0.0 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|294495223|ref|YP_003541716.1| - 7.4e-30 103.7 0.0 1.1e-29 103.2 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|294495223|ref|YP_003541716.1| - 8.6e-30 102.7 0.7 1.4e-29 102.0 0.1 1.7 2 0 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Fer4_5 PF12801.7 gi|294495224|ref|YP_003541717.1| - 8.4e-14 51.3 3.9 1.8e-11 43.8 0.1 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4 PF00037.27 gi|294495224|ref|YP_003541717.1| - 4.3e-10 39.0 20.8 1.4e-06 27.9 3.6 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|294495224|ref|YP_003541717.1| - 2e-09 37.5 27.8 2.2e-06 27.7 15.5 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294495224|ref|YP_003541717.1| - 5.5e-08 32.6 20.0 0.00027 20.9 2.8 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294495224|ref|YP_003541717.1| - 1.8e-07 31.6 17.0 0.00059 20.4 2.1 3.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|294495224|ref|YP_003541717.1| - 2.6e-07 30.8 10.8 2.6e-07 30.8 10.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|294495224|ref|YP_003541717.1| - 3.7e-07 30.2 14.6 0.00012 22.1 2.9 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|294495224|ref|YP_003541717.1| - 8.9e-07 29.4 16.6 0.012 16.2 6.8 3.4 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294495224|ref|YP_003541717.1| - 3.4e-05 23.9 21.4 7.9e-05 22.7 16.8 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495224|ref|YP_003541717.1| - 3.5e-05 24.6 15.6 0.0027 18.6 2.0 3.2 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|294495224|ref|YP_003541717.1| - 0.00072 20.3 24.0 0.001 19.8 4.5 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|294495224|ref|YP_003541717.1| - 0.00077 19.4 12.8 0.0088 16.1 3.7 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|294495224|ref|YP_003541717.1| - 0.0013 19.1 15.0 0.0025 18.2 3.4 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|294495224|ref|YP_003541717.1| - 0.0041 17.5 18.5 0.11 13.0 2.6 2.8 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|294495224|ref|YP_003541717.1| - 0.054 14.3 12.5 0.47 11.3 2.6 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|294495224|ref|YP_003541717.1| - 0.48 11.0 18.9 0.69 10.5 4.0 2.8 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I TrmB PF01978.19 gi|294495225|ref|YP_003541718.1| - 0.00014 21.6 0.1 0.00021 21.1 0.1 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|294495225|ref|YP_003541718.1| - 0.00018 21.4 0.0 0.00038 20.4 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|294495225|ref|YP_003541718.1| - 0.0013 18.2 0.0 0.0027 17.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|294495225|ref|YP_003541718.1| - 0.0016 18.3 0.0 0.0022 17.8 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|294495225|ref|YP_003541718.1| - 0.0065 16.3 4.3 0.0095 15.8 3.9 1.4 1 1 0 1 1 1 1 TFIIE alpha subunit Fe_dep_repress PF01325.19 gi|294495225|ref|YP_003541718.1| - 0.009 16.2 0.1 0.025 14.8 0.0 1.7 1 1 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Rio2_N PF09202.11 gi|294495225|ref|YP_003541718.1| - 0.011 15.9 0.1 0.024 14.8 0.1 1.5 1 1 0 1 1 1 0 Rio2, N-terminal HTH_IclR PF09339.10 gi|294495225|ref|YP_003541718.1| - 0.043 13.6 0.0 0.058 13.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|294495225|ref|YP_003541718.1| - 0.046 13.7 0.1 0.091 12.7 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|294495225|ref|YP_003541718.1| - 0.067 13.7 0.0 0.097 13.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF3215 PF11503.8 gi|294495225|ref|YP_003541718.1| - 0.074 12.9 0.2 0.19 11.6 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3215) Swi5 PF07061.11 gi|294495225|ref|YP_003541718.1| - 0.093 12.8 3.9 0.56 10.3 3.9 2.0 1 1 1 2 2 2 0 Swi5 TPP_enzyme_C PF02775.21 gi|294495226|ref|YP_003541719.1| - 1.5e-28 99.5 2.2 2.6e-28 98.7 0.4 2.3 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|294495226|ref|YP_003541719.1| - 2e-15 57.2 0.0 3.5e-15 56.4 0.0 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.18 gi|294495226|ref|YP_003541719.1| - 6.6e-07 29.1 0.4 8.2e-06 25.5 0.1 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.27 gi|294495226|ref|YP_003541719.1| - 1.2e-05 24.9 10.1 0.00098 18.9 2.7 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|294495226|ref|YP_003541719.1| - 2.2e-05 24.4 8.6 7e-05 22.9 8.6 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Transket_pyr PF02779.24 gi|294495226|ref|YP_003541719.1| - 2.6e-05 24.0 1.3 0.089 12.5 0.3 2.6 2 1 0 2 2 2 2 Transketolase, pyrimidine binding domain Fer4_2 PF12797.7 gi|294495226|ref|YP_003541719.1| - 0.00012 22.0 16.2 0.0025 17.8 1.4 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|294495226|ref|YP_003541719.1| - 0.00013 22.0 8.3 0.00013 22.0 8.3 2.3 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294495226|ref|YP_003541719.1| - 0.00027 20.9 16.1 0.015 15.3 2.2 3.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|294495226|ref|YP_003541719.1| - 0.00048 20.2 8.6 0.00048 20.2 8.6 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain PFOR_II PF17147.4 gi|294495226|ref|YP_003541719.1| - 0.0046 17.2 0.6 0.0096 16.2 0.0 1.8 2 0 0 2 2 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Fer4_4 PF12800.7 gi|294495226|ref|YP_003541719.1| - 0.075 13.6 11.6 1.3 9.7 2.5 3.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294495226|ref|YP_003541719.1| - 0.33 11.6 13.7 0.04 14.5 8.2 2.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495226|ref|YP_003541719.1| - 2.2 9.3 10.5 2.6 9.0 1.5 2.7 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|294495226|ref|YP_003541719.1| - 3.9 8.6 10.9 2 9.6 3.5 3.2 2 0 0 2 2 2 0 4Fe-4S binding domain POR PF01558.18 gi|294495227|ref|YP_003541720.1| - 2.3e-33 115.7 0.0 2.7e-33 115.5 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase OGG_N PF07934.12 gi|294495228|ref|YP_003541721.1| - 2.7e-16 59.7 0.4 3.5e-15 56.1 0.4 2.2 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.25 gi|294495228|ref|YP_003541721.1| - 1.7e-06 28.5 0.0 2.3e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|294495228|ref|YP_003541721.1| - 0.00078 19.2 0.0 0.0018 18.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif Mso1_Sec1_bdg PF14475.6 gi|294495228|ref|YP_003541721.1| - 0.05 13.2 3.0 0.28 10.8 0.0 2.9 3 0 0 3 3 3 0 Sec1-binding region of Mso1 HHH_2 PF12826.7 gi|294495228|ref|YP_003541721.1| - 0.073 13.2 0.0 0.63 10.2 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif tRNA_NucTransf2 PF09249.11 gi|294495229|ref|YP_003541722.1| - 5.9e-43 145.7 0.0 1.3e-42 144.7 0.0 1.6 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|294495229|ref|YP_003541722.1| - 1.2e-11 44.7 0.0 4e-11 43.1 0.0 1.9 2 0 0 2 2 2 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|294495229|ref|YP_003541722.1| - 1.6e-05 25.1 0.0 8.4e-05 22.8 0.0 2.0 1 1 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Ferritin PF00210.24 gi|294495230|ref|YP_003541723.1| - 1e-41 142.2 3.7 1.2e-41 142.0 3.7 1.0 1 0 0 1 1 1 1 Ferritin-like domain ANAPC5 PF12862.7 gi|294495230|ref|YP_003541723.1| - 0.0013 18.8 0.2 0.0035 17.4 0.2 1.7 1 1 0 1 1 1 1 Anaphase-promoting complex subunit 5 Lipoprotein_10 PF03202.13 gi|294495230|ref|YP_003541723.1| - 0.009 16.5 0.3 0.009 16.5 0.3 2.0 2 1 0 2 2 2 1 Putative mycoplasma lipoprotein, C-terminal region Phage_ABA_S PF18066.1 gi|294495230|ref|YP_003541723.1| - 0.029 15.0 0.5 0.62 10.8 0.0 2.2 1 1 1 2 2 2 0 Phage ABA sandwich domain NosL PF05573.12 gi|294495230|ref|YP_003541723.1| - 0.079 13.3 0.0 0.12 12.7 0.0 1.4 1 1 0 1 1 1 0 NosL Desulfoferrodox PF01880.18 gi|294495231|ref|YP_003541724.1| - 4.9e-23 81.5 0.1 6.1e-23 81.2 0.1 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin CMD PF02627.20 gi|294495232|ref|YP_003541725.1| - 9.4e-10 38.4 0.0 1.1e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PPR_2 PF13041.6 gi|294495232|ref|YP_003541725.1| - 0.016 15.4 0.0 0.038 14.2 0.0 1.6 1 0 0 1 1 1 0 PPR repeat family PPR PF01535.20 gi|294495232|ref|YP_003541725.1| - 0.07 13.4 0.0 1.3 9.5 0.0 2.5 2 0 0 2 2 2 0 PPR repeat AhpC-TSA PF00578.21 gi|294495233|ref|YP_003541726.1| - 2.8e-33 114.4 0.1 3.7e-33 114.1 0.1 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|294495233|ref|YP_003541726.1| - 1.7e-15 57.0 0.0 2.5e-15 56.5 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|294495233|ref|YP_003541726.1| - 8.3e-14 51.2 1.0 1.6e-13 50.2 0.5 1.8 2 0 0 2 2 2 1 C-terminal domain of 1-Cys peroxiredoxin P_C10 PF14974.6 gi|294495233|ref|YP_003541726.1| - 0.019 15.0 0.1 0.036 14.2 0.1 1.5 1 0 0 1 1 1 0 Protein C10 SCO1-SenC PF02630.14 gi|294495233|ref|YP_003541726.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 SCO1/SenC DUF2892 PF11127.8 gi|294495234|ref|YP_003541727.1| - 6.5e-13 48.5 0.2 8.2e-13 48.2 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Radical_SAM PF04055.21 gi|294495235|ref|YP_003541728.1| - 1.2e-23 84.3 0.1 1.4e-22 80.9 0.0 2.3 2 1 1 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|294495235|ref|YP_003541728.1| - 1.1e-11 45.2 0.0 2.1e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|294495235|ref|YP_003541728.1| - 1.7e-08 34.6 0.0 5.6e-08 32.9 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|294495235|ref|YP_003541728.1| - 8.1e-06 26.3 0.1 2.6e-05 24.6 0.1 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Pterin_bind PF00809.22 gi|294495235|ref|YP_003541728.1| - 0.021 14.5 0.0 0.08 12.6 0.0 1.8 1 1 1 2 2 2 0 Pterin binding enzyme HEM4 PF02602.15 gi|294495236|ref|YP_003541729.1| - 3e-40 138.0 0.0 3.6e-40 137.8 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TP_methylase PF00590.20 gi|294495237|ref|YP_003541730.1| - 6.5e-54 183.1 0.1 7.6e-54 182.9 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|294495237|ref|YP_003541730.1| - 0.029 14.7 0.3 0.25 11.7 0.3 2.1 1 1 0 1 1 1 0 Radical SAM superfamily DUF1699 PF08004.11 gi|294495238|ref|YP_003541731.1| - 6.8e-61 203.7 2.1 7.6e-61 203.5 2.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Img2 PF05046.14 gi|294495238|ref|YP_003541731.1| - 0.0021 18.3 0.1 0.0048 17.2 0.1 1.7 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) Zot PF05707.12 gi|294495238|ref|YP_003541731.1| - 0.029 14.0 0.0 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) DUF4394 PF14339.6 gi|294495238|ref|YP_003541731.1| - 0.21 10.9 0.0 0.25 10.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4394) Histidinol_dh PF00815.20 gi|294495239|ref|YP_003541732.1| - 8e-169 562.0 0.2 9e-169 561.8 0.2 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase EspA PF03433.13 gi|294495239|ref|YP_003541732.1| - 0.02 14.8 0.0 0.032 14.1 0.0 1.5 2 0 0 2 2 2 0 EspA-like secreted protein RIF5_SNase_2 PF18189.1 gi|294495239|ref|YP_003541732.1| - 0.14 11.9 0.0 0.3 10.9 0.0 1.6 1 0 0 1 1 1 0 TbRIF5 SNase domain 2 DEAD PF00270.29 gi|294495240|ref|YP_003541733.1| - 3.6e-24 85.5 0.0 7.9e-24 84.4 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|294495240|ref|YP_003541733.1| - 1.4e-09 38.4 0.4 6.5e-09 36.3 0.2 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|294495240|ref|YP_003541733.1| - 1.8e-09 37.8 0.0 4.7e-09 36.5 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|294495240|ref|YP_003541733.1| - 1.9e-09 37.8 0.0 1.1e-07 32.2 0.0 3.2 3 1 0 3 3 3 1 Helicase conserved C-terminal domain HHH_2 PF12826.7 gi|294495240|ref|YP_003541733.1| - 7.9e-06 25.9 0.0 2.9e-05 24.1 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|294495240|ref|YP_003541733.1| - 0.002 17.9 0.0 0.009 15.8 0.0 2.1 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|294495240|ref|YP_003541733.1| - 0.0062 16.4 0.0 2.4 8.2 0.0 3.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|294495240|ref|YP_003541733.1| - 0.0068 16.6 0.0 0.019 15.2 0.0 1.8 1 0 0 1 1 1 1 Pathogenicity locus VP4_haemagglut PF00426.18 gi|294495240|ref|YP_003541733.1| - 0.037 14.2 0.0 0.1 12.8 0.0 1.6 1 1 0 1 1 1 0 Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain DSHCT PF08148.12 gi|294495240|ref|YP_003541733.1| - 0.055 13.1 0.0 0.13 11.9 0.0 1.7 1 0 0 1 1 1 0 DSHCT (NUC185) domain Sec63 PF02889.16 gi|294495240|ref|YP_003541733.1| - 0.061 12.5 0.2 0.09 11.9 0.2 1.2 1 0 0 1 1 1 0 Sec63 Brl domain MS_channel PF00924.18 gi|294495241|ref|YP_003541734.1| - 4.2e-40 137.5 0.3 4.2e-40 137.5 0.3 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel UPF0182 PF03699.13 gi|294495241|ref|YP_003541734.1| - 0.018 13.2 1.9 0.023 12.9 1.9 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) GCD14_N PF14801.6 gi|294495241|ref|YP_003541734.1| - 0.053 13.4 0.1 0.12 12.2 0.1 1.6 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit N-term DUF502 PF04367.13 gi|294495241|ref|YP_003541734.1| - 0.19 11.6 1.6 0.4 10.6 1.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF502) PALP PF00291.25 gi|294495242|ref|YP_003541735.1| - 7.1e-42 143.8 0.0 8.4e-42 143.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PolC_DP2 PF03833.13 gi|294495243|ref|YP_003541736.1| - 0.00094 17.2 0.9 0.001 17.0 0.9 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Pyr_excise PF03013.14 gi|294495243|ref|YP_003541736.1| - 0.017 15.1 2.0 0.027 14.4 1.9 1.5 1 1 0 1 1 1 0 Pyrimidine dimer DNA glycosylase HMG-CoA_red PF00368.18 gi|294495244|ref|YP_003541737.1| - 4.7e-131 437.2 4.4 5.4e-131 437.0 4.4 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DNA_ligase_A_M PF01068.21 gi|294495245|ref|YP_003541738.1| - 4.6e-60 202.8 0.1 6.5e-60 202.3 0.1 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|294495245|ref|YP_003541738.1| - 4.6e-34 118.2 0.0 3.3e-33 115.5 0.0 2.3 1 1 1 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|294495245|ref|YP_003541738.1| - 8.8e-18 64.7 0.0 3.8e-17 62.7 0.0 2.1 2 1 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|294495245|ref|YP_003541738.1| - 7.9e-07 29.5 0.1 1.4e-06 28.7 0.1 1.4 1 0 0 1 1 1 1 RNA ligase mRNA_cap_enzyme PF01331.19 gi|294495245|ref|YP_003541738.1| - 0.012 15.4 0.1 4.6 7.0 0.0 2.9 2 1 1 3 3 3 0 mRNA capping enzyme, catalytic domain Homoserine_dh PF00742.19 gi|294495246|ref|YP_003541739.1| - 8.1e-56 188.7 1.1 2.1e-55 187.3 0.4 1.8 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|294495246|ref|YP_003541739.1| - 2.2e-11 44.4 0.2 4.8e-11 43.3 0.2 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|294495246|ref|YP_003541739.1| - 1.7e-05 24.7 0.2 3.6e-05 23.6 0.2 1.7 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Sigma70_r1_1 PF03979.14 gi|294495247|ref|YP_003541740.1| - 0.011 15.8 0.4 0.027 14.5 0.4 1.6 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 ACT PF01842.25 gi|294495247|ref|YP_003541740.1| - 0.011 15.5 0.6 0.032 14.0 0.0 2.0 3 0 0 3 3 3 0 ACT domain HTH_24 PF13412.6 gi|294495248|ref|YP_003541741.1| - 2.3e-05 23.9 1.0 4e-05 23.1 1.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|294495248|ref|YP_003541741.1| - 0.00027 20.8 0.1 0.00068 19.5 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|294495248|ref|YP_003541741.1| - 0.0016 18.9 0.0 0.0048 17.4 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|294495248|ref|YP_003541741.1| - 0.0061 16.4 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_micro PF17007.5 gi|294495248|ref|YP_003541741.1| - 0.01 14.7 2.3 0.044 12.6 0.1 2.1 2 0 0 2 2 2 0 HTH-like HTH_Crp_2 PF13545.6 gi|294495248|ref|YP_003541741.1| - 0.011 15.6 0.1 0.02 14.9 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF3818 PF12825.7 gi|294495248|ref|YP_003541741.1| - 0.025 13.6 1.2 0.032 13.3 1.2 1.1 1 0 0 1 1 1 0 Domain of unknown function in PX-proteins (DUF3818) HTH_11 PF08279.12 gi|294495248|ref|YP_003541741.1| - 0.025 14.5 0.1 0.047 13.6 0.1 1.5 1 0 0 1 1 1 0 HTH domain KCT2 PF17818.1 gi|294495248|ref|YP_003541741.1| - 0.05 13.7 1.3 0.072 13.2 0.8 1.5 1 1 0 1 1 1 0 Keratinocyte-associated gene product TMEM154 PF15102.6 gi|294495248|ref|YP_003541741.1| - 0.12 12.3 4.1 0.15 12.0 0.8 2.4 1 1 1 2 2 2 0 TMEM154 protein family DUF5385 PF17359.2 gi|294495248|ref|YP_003541741.1| - 0.14 11.7 3.4 0.1 12.1 0.9 2.0 1 1 1 2 2 2 0 Family of unknown function (DUF5385) Snf7 PF03357.21 gi|294495249|ref|YP_003541742.1| - 0.0013 18.3 4.3 0.0013 18.3 4.3 3.9 3 2 2 5 5 5 1 Snf7 DUF5082 PF16888.5 gi|294495249|ref|YP_003541742.1| - 0.0025 18.1 6.4 0.0025 18.1 6.4 4.2 2 2 2 5 5 5 1 Domain of unknown function (DUF5082) DUF1953 PF09196.10 gi|294495249|ref|YP_003541742.1| - 0.023 14.5 0.0 0.071 12.9 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1953) Glycos_trans_3N PF02885.17 gi|294495249|ref|YP_003541742.1| - 0.13 12.1 0.5 4.2 7.3 0.1 2.8 2 0 0 2 2 2 0 Glycosyl transferase family, helical bundle domain T4SS PF07996.11 gi|294495249|ref|YP_003541742.1| - 0.17 12.3 12.3 0.3 11.5 1.9 2.8 2 1 0 2 2 2 0 Type IV secretion system proteins DUF4969 PF16339.5 gi|294495250|ref|YP_003541743.1| - 0.029 14.7 0.4 0.034 14.5 0.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4969) DUF4972 PF16342.5 gi|294495250|ref|YP_003541743.1| - 0.091 12.5 0.6 0.21 11.3 0.4 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4972) SMBP PF16785.5 gi|294495251|ref|YP_003541744.1| - 0.0022 18.2 12.2 0.36 11.1 0.0 3.7 1 1 2 3 3 3 2 Small metal-binding protein Metallophos_2 PF12850.7 gi|294495251|ref|YP_003541744.1| - 0.038 14.2 0.2 0.061 13.5 0.2 1.4 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain Na_Ca_ex_C PF16494.5 gi|294495251|ref|YP_003541744.1| - 0.38 11.2 11.5 1.2 9.6 0.9 2.9 1 1 0 2 2 2 0 C-terminal extension of sodium/calcium exchanger domain DUF664 PF04978.12 gi|294495251|ref|YP_003541744.1| - 0.51 10.7 6.3 0.11 12.9 1.0 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF664) ABC2_membrane_3 PF12698.7 gi|294495251|ref|YP_003541744.1| - 0.63 9.1 3.3 1.9 7.5 3.4 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein HEPN_Toprim_N PF18871.1 gi|294495251|ref|YP_003541744.1| - 4.9 7.0 7.8 1.6 8.6 2.1 2.1 2 0 0 2 2 2 0 HEPN/Toprim N-terminal domain 1 Prominin PF05478.11 gi|294495252|ref|YP_003541745.1| - 0.14 10.1 0.3 0.13 10.2 0.3 1.0 1 0 0 1 1 1 0 Prominin OppC_N PF12911.7 gi|294495252|ref|YP_003541745.1| - 0.25 11.3 3.6 0.3 11.1 3.6 1.1 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C Peptidase_M48 PF01435.18 gi|294495253|ref|YP_003541746.1| - 1.1e-36 126.5 0.2 1.7e-36 125.8 0.2 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|294495253|ref|YP_003541746.1| - 4e-05 23.0 0.0 0.00011 21.6 0.0 1.8 2 0 0 2 2 2 1 BlaR1 peptidase M56 BSP PF04450.12 gi|294495253|ref|YP_003541746.1| - 0.0027 17.5 0.1 0.0039 17.0 0.1 1.2 1 0 0 1 1 1 1 Peptidase of plants and bacteria MSP1a PF11670.8 gi|294495253|ref|YP_003541746.1| - 0.014 14.7 0.2 0.027 13.8 0.2 1.4 1 0 0 1 1 1 0 Major surface protein 1a (MSP1a) DUF4157 PF13699.6 gi|294495253|ref|YP_003541746.1| - 0.015 15.5 0.7 0.044 14.0 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) HemY_N PF07219.13 gi|294495253|ref|YP_003541746.1| - 6.8 6.9 8.2 4.6 7.5 0.0 2.9 3 1 0 3 3 3 0 HemY protein N-terminus DUF488 PF04343.13 gi|294495254|ref|YP_003541747.1| - 4.5e-20 72.4 0.4 7.7e-19 68.5 0.4 2.1 1 1 0 1 1 1 1 Protein of unknown function, DUF488 Thymidylat_synt PF00303.19 gi|294495255|ref|YP_003541748.1| - 8e-21 74.4 0.3 9.7e-21 74.1 0.3 1.1 1 0 0 1 1 1 1 Thymidylate synthase EPSP_synthase PF00275.20 gi|294495256|ref|YP_003541749.1| - 2.9e-113 378.7 0.2 3.6e-113 378.4 0.2 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FAD_binding_3 PF01494.19 gi|294495257|ref|YP_003541750.1| - 4.7e-17 62.3 0.7 4.7e-16 59.0 0.7 2.1 1 1 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|294495257|ref|YP_003541750.1| - 9.3e-10 38.1 0.3 2.9e-09 36.5 0.3 1.7 1 1 0 1 1 1 1 Lycopene cyclase protein DAO PF01266.24 gi|294495257|ref|YP_003541750.1| - 3.1e-09 36.9 3.9 3.7e-05 23.5 0.9 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|294495257|ref|YP_003541750.1| - 4.4e-09 36.2 0.7 6.6e-09 35.6 0.7 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|294495257|ref|YP_003541750.1| - 2.5e-07 30.2 5.3 0.00018 20.8 0.1 2.9 3 1 1 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|294495257|ref|YP_003541750.1| - 2.7e-06 26.4 1.0 3.5e-05 22.7 0.5 2.2 2 0 0 2 2 2 1 HI0933-like protein Trp_halogenase PF04820.14 gi|294495257|ref|YP_003541750.1| - 4.1e-05 22.6 0.9 0.0072 15.2 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|294495257|ref|YP_003541750.1| - 5.6e-05 23.3 0.8 0.0002 21.5 0.8 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|294495257|ref|YP_003541750.1| - 0.00043 19.6 0.2 0.00088 18.6 0.2 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 gi|294495257|ref|YP_003541750.1| - 0.00098 19.6 0.9 0.79 10.3 0.3 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|294495257|ref|YP_003541750.1| - 0.0015 17.7 0.9 0.0029 16.8 0.9 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|294495257|ref|YP_003541750.1| - 0.0086 15.2 6.5 0.026 13.6 3.7 2.1 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.18 gi|294495257|ref|YP_003541750.1| - 0.011 15.6 0.4 0.025 14.5 0.4 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|294495257|ref|YP_003541750.1| - 0.026 13.8 0.1 0.06 12.6 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|294495257|ref|YP_003541750.1| - 0.052 12.8 0.4 1.8 7.7 0.3 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ACT PF01842.25 gi|294495258|ref|YP_003541751.1| - 1.7e-05 24.5 0.1 5.4e-05 22.9 0.1 1.9 1 0 0 1 1 1 1 ACT domain Transketolase_C PF02780.20 gi|294495258|ref|YP_003541751.1| - 0.0073 16.2 0.2 0.14 12.1 0.0 2.1 1 1 1 2 2 2 2 Transketolase, C-terminal domain HMGL-like PF00682.19 gi|294495259|ref|YP_003541752.1| - 7.5e-33 114.2 0.0 1e-32 113.8 0.0 1.1 1 0 0 1 1 1 1 HMGL-like Sigma54_DBD PF04552.13 gi|294495259|ref|YP_003541752.1| - 0.069 12.8 0.1 4 7.1 0.1 2.2 2 0 0 2 2 2 0 Sigma-54, DNA binding domain Iso_dh PF00180.20 gi|294495260|ref|YP_003541753.1| - 1.1e-85 287.9 0.0 1.4e-85 287.6 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Acetyltransf_CG PF14542.6 gi|294495260|ref|YP_003541753.1| - 0.089 12.9 0.0 0.57 10.3 0.0 2.1 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase TatD_DNase PF01026.21 gi|294495261|ref|YP_003541754.1| - 7.2e-21 74.7 0.0 9.1e-21 74.4 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase CMD PF02627.20 gi|294495262|ref|YP_003541755.1| - 6.3e-22 77.4 0.1 7.3e-22 77.2 0.1 1.0 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Desulfoferrodox PF01880.18 gi|294495263|ref|YP_003541756.1| - 6.5e-11 42.7 0.2 7.7e-11 42.5 0.2 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin DUF21 PF01595.20 gi|294495264|ref|YP_003541757.1| - 2.4e-34 118.6 2.0 3.5e-34 118.0 2.0 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain DUF378 PF04070.12 gi|294495265|ref|YP_003541758.1| - 6.2e-21 74.0 11.1 6.8e-21 73.9 11.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF378) UvrA_inter PF17760.1 gi|294495266|ref|YP_003541759.1| - 3.5e-39 133.2 0.4 8.3e-39 132.0 0.4 1.7 1 0 0 1 1 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|294495266|ref|YP_003541759.1| - 2.1e-33 114.9 0.0 7.2e-32 110.0 0.0 2.4 2 0 0 2 2 2 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|294495266|ref|YP_003541759.1| - 2.3e-19 70.3 0.1 2.5e-08 34.5 0.0 4.3 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|294495266|ref|YP_003541759.1| - 3.2e-12 46.4 0.0 0.04 13.4 0.0 4.4 4 1 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|294495266|ref|YP_003541759.1| - 6.5e-08 33.1 0.0 0.021 15.2 0.0 3.2 3 0 0 3 3 3 2 AAA ATPase domain AAA_29 PF13555.6 gi|294495266|ref|YP_003541759.1| - 7.6e-07 28.8 0.1 0.018 14.8 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|294495266|ref|YP_003541759.1| - 2.3e-06 27.6 0.3 0.057 13.3 0.1 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_21 PF13304.6 gi|294495266|ref|YP_003541759.1| - 2.7e-06 27.4 8.0 0.0011 18.8 0.0 4.1 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|294495266|ref|YP_003541759.1| - 5.7e-06 26.6 3.0 0.048 13.9 0.0 4.0 4 1 0 4 4 3 2 AAA domain DnaJ_CXXCXGXG PF00684.19 gi|294495266|ref|YP_003541759.1| - 7.7e-06 26.2 5.5 0.053 13.9 0.3 3.7 4 0 0 4 4 3 2 DnaJ central domain AAA_18 PF13238.6 gi|294495266|ref|YP_003541759.1| - 2.5e-05 24.8 0.0 0.1 13.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|294495266|ref|YP_003541759.1| - 4.4e-05 23.3 0.5 0.16 11.7 0.0 3.6 3 0 0 3 3 3 1 AAA domain Viral_helicase1 PF01443.18 gi|294495266|ref|YP_003541759.1| - 9.4e-05 22.3 0.1 0.0035 17.1 0.1 2.7 3 0 0 3 3 2 1 Viral (Superfamily 1) RNA helicase APS_kinase PF01583.20 gi|294495266|ref|YP_003541759.1| - 0.00011 22.1 0.6 0.49 10.3 0.1 2.9 3 0 0 3 3 2 2 Adenylylsulphate kinase AAA_23 PF13476.6 gi|294495266|ref|YP_003541759.1| - 0.00011 22.7 0.4 0.26 11.8 0.1 2.5 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|294495266|ref|YP_003541759.1| - 0.00019 21.6 0.0 0.98 9.6 0.0 3.2 3 0 0 3 3 3 2 AAA domain T2SSE PF00437.20 gi|294495266|ref|YP_003541759.1| - 0.00026 20.1 0.1 0.11 11.6 0.0 2.6 2 0 0 2 2 2 1 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|294495266|ref|YP_003541759.1| - 0.00032 20.7 0.1 1.2 8.9 0.0 2.7 3 0 0 3 3 2 2 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|294495266|ref|YP_003541759.1| - 0.00068 19.7 0.0 2.9 7.9 0.0 3.2 3 0 0 3 3 3 1 AAA domain DUF2075 PF09848.9 gi|294495266|ref|YP_003541759.1| - 0.00072 18.9 0.0 0.51 9.5 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) cobW PF02492.19 gi|294495266|ref|YP_003541759.1| - 0.00099 18.7 0.3 0.1 12.2 0.1 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Zn-ribbon_8 PF09723.10 gi|294495266|ref|YP_003541759.1| - 0.0021 18.1 11.1 0.6 10.3 1.0 4.5 4 0 0 4 4 4 1 Zinc ribbon domain MMR_HSR1 PF01926.23 gi|294495266|ref|YP_003541759.1| - 0.0024 17.9 0.9 0.14 12.2 0.1 2.9 3 0 0 3 3 2 1 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|294495266|ref|YP_003541759.1| - 0.0028 17.3 0.1 0.12 11.9 0.0 2.7 3 0 0 3 3 2 1 AAA domain PRK PF00485.18 gi|294495266|ref|YP_003541759.1| - 0.0029 17.4 0.1 0.29 10.8 0.0 2.5 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family NACHT PF05729.12 gi|294495266|ref|YP_003541759.1| - 0.0072 16.3 0.0 1.5 8.7 0.0 2.5 2 0 0 2 2 2 1 NACHT domain MeaB PF03308.16 gi|294495266|ref|YP_003541759.1| - 0.016 14.2 0.1 0.32 9.9 0.0 2.6 3 0 0 3 3 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 gi|294495266|ref|YP_003541759.1| - 0.017 14.4 0.0 4 6.7 0.0 2.6 2 0 0 2 2 2 0 Zeta toxin AAA_15 PF13175.6 gi|294495266|ref|YP_003541759.1| - 0.027 14.2 2.8 4.3 7.0 0.0 3.9 4 0 0 4 4 4 0 AAA ATPase domain AAA_30 PF13604.6 gi|294495266|ref|YP_003541759.1| - 0.03 14.0 0.0 6.2 6.5 0.0 3.1 3 0 0 3 3 3 0 AAA domain AAA_7 PF12775.7 gi|294495266|ref|YP_003541759.1| - 0.033 13.7 0.1 4.1 6.9 0.0 2.6 2 0 0 2 2 2 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|294495266|ref|YP_003541759.1| - 0.033 14.6 0.1 2.1 8.7 0.0 2.4 2 0 0 2 2 2 0 RNA helicase ATPase PF06745.13 gi|294495266|ref|YP_003541759.1| - 0.035 13.5 0.0 5.9 6.2 0.0 2.4 2 0 0 2 2 2 0 KaiC Sigma54_activat PF00158.26 gi|294495266|ref|YP_003541759.1| - 0.051 13.3 0.1 2.3 7.9 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain NB-ARC PF00931.22 gi|294495266|ref|YP_003541759.1| - 0.052 12.7 1.5 0.8 8.8 0.0 2.9 4 0 0 4 4 2 0 NB-ARC domain NTPase_1 PF03266.15 gi|294495266|ref|YP_003541759.1| - 0.062 13.2 2.9 0.53 10.2 0.1 3.2 3 0 0 3 3 3 0 NTPase KAP_NTPase PF07693.14 gi|294495266|ref|YP_003541759.1| - 0.064 12.5 0.2 33 3.6 0.0 3.6 4 0 0 4 4 4 0 KAP family P-loop domain AAA_28 PF13521.6 gi|294495266|ref|YP_003541759.1| - 0.066 13.5 0.1 7.5 6.8 0.1 2.6 2 0 0 2 2 2 0 AAA domain BCA_ABC_TP_C PF12399.8 gi|294495266|ref|YP_003541759.1| - 0.069 13.1 0.2 0.22 11.5 0.0 2.0 2 0 0 2 2 1 0 Branched-chain amino acid ATP-binding cassette transporter dNK PF01712.19 gi|294495266|ref|YP_003541759.1| - 0.073 12.9 0.1 0.8 9.5 0.0 2.2 2 0 0 2 2 2 0 Deoxynucleoside kinase Septin PF00735.18 gi|294495266|ref|YP_003541759.1| - 0.08 12.2 0.1 0.18 11.0 0.0 1.6 2 0 0 2 2 1 0 Septin IIGP PF05049.13 gi|294495266|ref|YP_003541759.1| - 0.13 11.3 0.1 0.69 8.9 0.1 1.9 2 0 0 2 2 2 0 Interferon-inducible GTPase (IIGP) AAA PF00004.29 gi|294495266|ref|YP_003541759.1| - 0.14 12.6 0.1 68 3.9 0.0 3.4 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) DUF463 PF04317.12 gi|294495266|ref|YP_003541759.1| - 0.3 10.0 0.7 1.8 7.4 0.0 2.0 2 0 0 2 2 2 0 YcjX-like family, DUF463 zf-ribbon_3 PF13248.6 gi|294495266|ref|YP_003541759.1| - 0.34 10.4 9.0 5.3 6.6 0.3 3.4 3 0 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|294495266|ref|YP_003541759.1| - 0.54 10.3 6.4 19 5.3 0.0 3.9 4 0 0 4 4 3 0 Transposase zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|294495266|ref|YP_003541759.1| - 0.67 10.3 5.8 1 9.7 0.3 3.2 3 0 0 3 3 3 0 zinc-ribbon YhfH PF14149.6 gi|294495266|ref|YP_003541759.1| - 1.5 8.9 0.0 1.5 8.9 0.0 4.1 5 1 0 5 5 2 0 YhfH-like protein DZR PF12773.7 gi|294495266|ref|YP_003541759.1| - 2.6 8.1 7.9 26 5.0 0.2 3.7 4 0 0 4 4 4 0 Double zinc ribbon FmdE PF02663.14 gi|294495268|ref|YP_003541761.1| - 1.5e-41 141.6 0.1 1.8e-41 141.2 0.1 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|294495268|ref|YP_003541761.1| - 3.4e-07 30.1 0.5 7.3e-07 29.0 0.5 1.6 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.22 gi|294495268|ref|YP_003541761.1| - 0.015 15.5 0.9 0.039 14.2 0.9 1.7 1 0 0 1 1 1 0 LIM domain Lyase_1 PF00206.20 gi|294495269|ref|YP_003541762.1| - 9.6e-58 196.0 0.8 1.7e-57 195.2 0.8 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|294495269|ref|YP_003541762.1| - 8e-21 74.4 0.6 2e-20 73.1 0.1 1.9 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus FumaraseC_C PF10415.9 gi|294495269|ref|YP_003541762.1| - 0.00039 20.8 0.0 0.0022 18.4 0.0 2.4 1 0 0 1 1 1 1 Fumarase C C-terminus ASL_C2 PF14698.6 gi|294495269|ref|YP_003541762.1| - 0.00082 20.1 0.5 0.013 16.2 0.1 2.8 3 0 0 3 3 3 1 Argininosuccinate lyase C-terminal FTR1 PF03239.14 gi|294495270|ref|YP_003541763.1| - 1.6e-43 149.0 16.7 1.9e-43 148.8 16.7 1.1 1 0 0 1 1 1 1 Iron permease FTR1 family T4_tail_cap PF11091.8 gi|294495270|ref|YP_003541763.1| - 0.11 11.4 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Tail-tube assembly protein HERV-K_REC PF15695.5 gi|294495270|ref|YP_003541763.1| - 0.2 11.7 0.4 0.48 10.5 0.4 1.6 1 0 0 1 1 1 0 Rec (regulator of expression encoded by corf) of HERV-K-113 Lig_chan PF00060.26 gi|294495270|ref|YP_003541763.1| - 0.5 10.2 4.5 1.1 9.0 4.5 1.6 1 0 0 1 1 1 0 Ligand-gated ion channel Pox_A14 PF05767.12 gi|294495270|ref|YP_003541763.1| - 4.2 7.6 12.8 1.1 9.5 0.6 3.4 2 1 1 3 3 3 0 Poxvirus virion envelope protein A14 HisKA_7TM PF16927.5 gi|294495271|ref|YP_003541764.1| - 1.2e-59 202.0 23.2 1.6e-59 201.6 23.2 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|294495271|ref|YP_003541764.1| - 1.1e-30 106.5 0.2 2.5e-30 105.2 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|294495271|ref|YP_003541764.1| - 3.1e-20 72.4 0.9 2.9e-09 37.1 0.1 2.9 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|294495271|ref|YP_003541764.1| - 7e-20 71.1 0.1 1.6e-09 37.7 0.0 2.5 2 0 0 2 2 2 2 PAS fold HisKA PF00512.25 gi|294495271|ref|YP_003541764.1| - 8.6e-18 64.1 0.3 1.9e-17 63.1 0.0 1.8 2 0 0 2 2 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|294495271|ref|YP_003541764.1| - 5.2e-16 58.9 0.0 2.4e-08 34.2 0.0 2.8 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|294495271|ref|YP_003541764.1| - 1.1e-14 54.1 0.0 9.9e-07 28.6 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|294495271|ref|YP_003541764.1| - 8e-11 42.1 0.0 4.3e-10 39.8 0.0 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.6 gi|294495271|ref|YP_003541764.1| - 0.00017 21.4 0.1 0.00039 20.3 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.6 gi|294495271|ref|YP_003541764.1| - 0.00096 19.7 0.3 0.0057 17.2 0.0 2.4 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 gi|294495271|ref|YP_003541764.1| - 0.0013 18.6 1.0 0.0031 17.4 0.1 2.0 2 0 0 2 2 2 1 GHKL domain PAS_7 PF12860.7 gi|294495271|ref|YP_003541764.1| - 0.0023 18.1 0.3 0.024 14.8 0.0 2.5 2 1 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|294495271|ref|YP_003541764.1| - 0.085 12.8 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Oxidored_q3 PF00499.20 gi|294495271|ref|YP_003541764.1| - 9.4 6.0 9.1 0.54 10.0 3.3 1.8 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ABC_tran PF00005.27 gi|294495272|ref|YP_003541765.1| - 8.2e-31 107.3 0.0 1.1e-30 106.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|294495272|ref|YP_003541765.1| - 7.9e-10 39.0 0.7 0.00039 20.3 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|294495272|ref|YP_003541765.1| - 3e-06 27.9 0.1 5.3e-06 27.1 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|294495272|ref|YP_003541765.1| - 6.4e-05 22.6 0.0 0.00014 21.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|294495272|ref|YP_003541765.1| - 7.4e-05 22.3 0.2 0.0055 16.2 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|294495272|ref|YP_003541765.1| - 8.8e-05 22.9 0.0 0.00012 22.5 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|294495272|ref|YP_003541765.1| - 0.0011 18.9 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|294495272|ref|YP_003541765.1| - 0.0018 18.1 0.0 0.0031 17.3 0.0 1.4 1 1 1 2 2 2 1 AAA ATPase domain HSM3_N PF18795.1 gi|294495272|ref|YP_003541765.1| - 0.0026 17.2 0.1 0.0038 16.7 0.1 1.2 1 0 0 1 1 1 1 DNA mismatch repair protein HSM3, N terminal domain Mg_chelatase PF01078.21 gi|294495272|ref|YP_003541765.1| - 0.0061 16.0 0.0 0.01 15.3 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_13 PF13166.6 gi|294495272|ref|YP_003541765.1| - 0.016 13.9 0.1 3.5 6.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|294495272|ref|YP_003541765.1| - 0.016 14.4 0.2 0.13 11.4 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_5 PF07728.14 gi|294495272|ref|YP_003541765.1| - 0.018 15.1 0.4 2.7 8.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|294495272|ref|YP_003541765.1| - 0.02 15.2 0.2 0.11 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|294495272|ref|YP_003541765.1| - 0.024 15.0 0.3 0.42 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|294495272|ref|YP_003541765.1| - 0.028 14.4 0.0 0.056 13.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ATPase_2 PF01637.18 gi|294495272|ref|YP_003541765.1| - 0.035 14.0 0.0 0.078 12.9 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA PF00004.29 gi|294495272|ref|YP_003541765.1| - 0.037 14.5 0.1 0.12 12.8 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|294495272|ref|YP_003541765.1| - 0.044 13.8 0.0 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|294495272|ref|YP_003541765.1| - 0.055 13.2 0.0 0.079 12.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|294495272|ref|YP_003541765.1| - 0.087 11.6 0.2 3.3 6.4 0.1 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Rad17 PF03215.15 gi|294495272|ref|YP_003541765.1| - 0.15 12.0 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_27 PF13514.6 gi|294495272|ref|YP_003541765.1| - 0.17 11.5 0.0 0.25 10.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|294495272|ref|YP_003541765.1| - 0.22 11.8 0.0 1.9 8.8 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit FecCD PF01032.18 gi|294495273|ref|YP_003541766.1| - 1.8e-92 309.7 26.4 2.3e-92 309.3 26.4 1.2 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|294495273|ref|YP_003541766.1| - 1.2e-08 34.7 15.5 2.5e-08 33.8 15.5 1.5 1 0 0 1 1 1 1 ABC 3 transport family Peripla_BP_2 PF01497.18 gi|294495274|ref|YP_003541767.1| - 1.7e-16 60.5 0.0 3.4e-16 59.5 0.0 1.5 1 0 0 1 1 1 1 Periplasmic binding protein FAD_binding_4 PF01565.23 gi|294495275|ref|YP_003541768.1| - 1e-33 116.0 0.3 5.2e-33 113.7 0.1 2.3 3 0 0 3 3 3 1 FAD binding domain CCG PF02754.16 gi|294495275|ref|YP_003541768.1| - 4.1e-32 110.2 3.6 6.3e-16 58.4 0.4 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_17 PF13534.6 gi|294495275|ref|YP_003541768.1| - 6.7e-09 36.2 5.7 6.7e-09 36.2 5.7 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|294495275|ref|YP_003541768.1| - 1.9e-05 25.0 5.9 1.9e-05 25.0 5.9 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|294495275|ref|YP_003541768.1| - 0.002 18.6 5.5 0.006 17.2 5.5 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294495275|ref|YP_003541768.1| - 0.0025 17.9 6.6 0.01 16.0 6.6 2.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294495275|ref|YP_003541768.1| - 0.046 13.9 7.6 0.098 12.8 6.0 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain FAD-oxidase_C PF02913.19 gi|294495275|ref|YP_003541768.1| - 0.083 12.5 0.0 2.6 7.6 0.0 2.5 2 1 0 2 2 2 0 FAD linked oxidases, C-terminal domain Rubrerythrin PF02915.17 gi|294495276|ref|YP_003541769.1| - 4.6e-08 33.6 1.2 5.4e-08 33.3 1.2 1.1 1 0 0 1 1 1 1 Rubrerythrin COQ7 PF03232.13 gi|294495276|ref|YP_003541769.1| - 0.00021 21.1 0.1 0.00025 20.9 0.1 1.1 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 DUF2383 PF09537.10 gi|294495276|ref|YP_003541769.1| - 0.00038 20.8 0.2 0.00051 20.4 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin_2 PF13668.6 gi|294495276|ref|YP_003541769.1| - 0.0019 18.4 0.4 0.0023 18.1 0.4 1.1 1 0 0 1 1 1 1 Ferritin-like domain Ferritin PF00210.24 gi|294495276|ref|YP_003541769.1| - 0.012 15.5 0.7 0.016 15.1 0.7 1.2 1 0 0 1 1 1 0 Ferritin-like domain GCV_T_C PF08669.11 gi|294495277|ref|YP_003541770.1| - 0.011 15.7 0.0 0.027 14.4 0.0 1.7 1 0 0 1 1 1 0 Glycine cleavage T-protein C-terminal barrel domain SecE PF00584.20 gi|294495277|ref|YP_003541770.1| - 0.17 11.8 4.1 0.31 11.0 4.1 1.4 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex UPF0047 PF01894.17 gi|294495278|ref|YP_003541771.1| - 8.2e-41 138.8 0.1 9.4e-41 138.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 AbiJ_NTD4 PF18863.1 gi|294495279|ref|YP_003541772.1| - 0.037 14.5 0.2 0.039 14.4 0.2 1.2 1 0 0 1 1 1 0 AbiJ N-terminal domain 4 PP2C_C PF07830.13 gi|294495279|ref|YP_003541772.1| - 0.25 11.8 1.5 2.3 8.7 0.9 2.1 1 1 1 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain OTCace PF00185.24 gi|294495280|ref|YP_003541773.1| - 1.1e-57 194.6 0.0 1.7e-57 193.9 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|294495280|ref|YP_003541773.1| - 1.4e-54 184.1 0.8 2.5e-54 183.3 0.8 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DRTGG PF07085.12 gi|294495280|ref|YP_003541773.1| - 0.088 12.6 0.1 25 4.7 0.0 2.8 1 1 1 2 2 2 0 DRTGG domain GARS_A PF01071.19 gi|294495281|ref|YP_003541774.1| - 4.6e-55 186.4 0.1 2.6e-54 184.0 0.1 2.1 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|294495281|ref|YP_003541774.1| - 1.6e-26 92.9 0.0 3.4e-26 91.9 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|294495281|ref|YP_003541774.1| - 2.3e-13 50.2 0.0 1.3e-12 47.8 0.1 2.3 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|294495281|ref|YP_003541774.1| - 0.00031 20.8 0.0 0.00058 19.9 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|294495281|ref|YP_003541774.1| - 0.0048 16.5 0.0 0.015 14.9 0.0 1.9 2 0 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|294495281|ref|YP_003541774.1| - 0.0098 15.4 0.0 0.03 13.8 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GFO_IDH_MocA PF01408.22 gi|294495281|ref|YP_003541774.1| - 0.019 15.8 0.1 0.11 13.4 0.0 2.2 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold ATPgrasp_ST PF14397.6 gi|294495281|ref|YP_003541774.1| - 0.02 14.2 0.0 0.27 10.5 0.0 2.2 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp GSH-S_ATP PF02955.16 gi|294495281|ref|YP_003541774.1| - 0.07 12.5 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain Pribosyltran PF00156.27 gi|294495282|ref|YP_003541775.1| - 4e-14 52.4 0.9 5.9e-14 51.9 0.8 1.3 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|294495282|ref|YP_003541775.1| - 0.0022 17.5 0.0 0.0033 16.9 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF4777 PF16007.5 gi|294495282|ref|YP_003541775.1| - 0.098 12.9 0.1 4.3 7.7 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4777) CarS-like PF01864.17 gi|294495283|ref|YP_003541776.1| - 1.4e-46 158.7 3.3 1.5e-46 158.5 3.3 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|294495283|ref|YP_003541776.1| - 2.8e-06 27.3 0.6 2.8e-06 27.3 0.6 1.9 1 1 1 2 2 2 1 Cytidylyltransferase family CcmF_C PF16327.5 gi|294495284|ref|YP_003541777.1| - 4.7e-19 68.8 3.9 7.2e-19 68.2 3.9 1.2 1 0 0 1 1 1 1 Cytochrome c-type biogenesis protein CcmF C-terminal ResB PF05140.14 gi|294495284|ref|YP_003541777.1| - 0.0082 14.9 0.4 0.0082 14.9 0.4 2.0 1 1 1 2 2 2 1 ResB-like family Cytochrom_C_asm PF01578.20 gi|294495285|ref|YP_003541778.1| - 2.4e-34 119.0 24.4 2.4e-34 119.0 24.4 2.1 2 0 0 2 2 2 1 Cytochrome C assembly protein DUF3852 PF12963.7 gi|294495285|ref|YP_003541778.1| - 0.18 12.1 5.8 0.54 10.6 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3852) HATPase_c PF02518.26 gi|294495286|ref|YP_003541779.1| - 2.3e-29 102.1 0.5 5.3e-29 101.0 0.5 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|294495286|ref|YP_003541779.1| - 1.9e-14 53.8 0.0 4.8e-14 52.5 0.0 1.7 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|294495286|ref|YP_003541779.1| - 1.8e-09 37.5 0.0 5.6e-09 35.9 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|294495286|ref|YP_003541779.1| - 5.1e-09 36.3 0.1 2.2e-08 34.3 0.0 2.2 2 0 0 2 2 2 1 PAS domain Response_reg PF00072.24 gi|294495286|ref|YP_003541779.1| - 5.3e-07 29.8 0.1 2.2e-06 27.8 0.1 2.1 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c_3 PF13589.6 gi|294495286|ref|YP_003541779.1| - 5.9e-06 26.2 0.4 1.8e-05 24.6 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|294495286|ref|YP_003541779.1| - 1.5e-05 25.0 0.0 6e-05 23.0 0.0 2.0 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|294495286|ref|YP_003541779.1| - 0.00013 22.2 0.0 0.00032 20.9 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 gi|294495286|ref|YP_003541779.1| - 0.003 17.4 1.2 0.005 16.7 0.1 2.0 2 0 0 2 2 2 1 GHKL domain PAS_8 PF13188.7 gi|294495286|ref|YP_003541779.1| - 0.017 15.1 0.0 0.057 13.5 0.0 1.8 2 0 0 2 2 2 0 PAS domain PAS_7 PF12860.7 gi|294495286|ref|YP_003541779.1| - 0.017 15.3 0.0 0.27 11.4 0.0 2.6 1 1 0 1 1 1 0 PAS fold UPF0158 PF03682.13 gi|294495286|ref|YP_003541779.1| - 0.42 10.6 5.9 12 5.8 0.1 3.6 3 1 1 4 4 4 0 Uncharacterised protein family (UPF0158) AA_kinase PF00696.28 gi|294495287|ref|YP_003541780.1| - 2.4e-40 138.6 0.3 3.2e-40 138.3 0.3 1.2 1 0 0 1 1 1 1 Amino acid kinase family PUA PF01472.20 gi|294495287|ref|YP_003541780.1| - 7.8e-19 67.4 0.1 1.7e-18 66.4 0.1 1.6 1 0 0 1 1 1 1 PUA domain Aldedh PF00171.22 gi|294495288|ref|YP_003541781.1| - 6e-14 51.4 0.1 6.3e-11 41.5 0.0 2.2 1 1 0 2 2 2 2 Aldehyde dehydrogenase family MCR_alpha_N PF02745.15 gi|294495289|ref|YP_003541782.1| - 5.8e-140 465.3 0.6 7.4e-140 464.9 0.6 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|294495289|ref|YP_003541782.1| - 7.9e-63 210.6 2.9 2.1e-62 209.2 2.9 1.7 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MCR_gamma PF02240.16 gi|294495290|ref|YP_003541783.1| - 3e-117 390.2 0.4 3.4e-117 390.0 0.4 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_C PF04609.12 gi|294495291|ref|YP_003541784.1| - 2.6e-06 26.7 1.3 4.3e-06 26.0 1.3 1.4 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MCR_D PF02505.14 gi|294495292|ref|YP_003541785.1| - 8.2e-56 187.8 0.0 9.4e-56 187.6 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.18 gi|294495293|ref|YP_003541786.1| - 3.4e-141 469.1 6.6 3.4e-141 469.1 6.6 1.4 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|294495293|ref|YP_003541786.1| - 8.8e-86 286.2 1.6 1.6e-85 285.4 1.6 1.4 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain Radical_SAM PF04055.21 gi|294495294|ref|YP_003541787.1| - 1.8e-14 54.5 3.2 8.8e-13 49.0 2.2 3.0 2 1 0 2 2 2 1 Radical SAM superfamily YedD PF13987.6 gi|294495294|ref|YP_003541787.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 YedD-like protein PolC_DP2 PF03833.13 gi|294495295|ref|YP_003541788.1| - 0 1336.9 0.0 0 1336.0 0.0 1.4 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 DZR PF12773.7 gi|294495295|ref|YP_003541788.1| - 0.022 14.8 19.2 1.4 9.0 0.3 3.3 2 1 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|294495295|ref|YP_003541788.1| - 0.21 11.0 0.1 0.21 11.0 0.1 5.2 4 2 1 5 5 5 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|294495295|ref|YP_003541788.1| - 0.36 11.2 0.0 0.36 11.2 0.0 4.0 3 1 1 4 4 4 0 Restriction alleviation protein Lar DUF2072 PF09845.9 gi|294495295|ref|YP_003541788.1| - 2.3 8.5 6.7 0.32 11.3 0.1 2.7 2 1 0 2 2 2 0 Zn-ribbon containing protein TerY_C PF15616.6 gi|294495295|ref|YP_003541788.1| - 3.8 7.6 13.3 1.3 9.1 6.7 2.6 2 1 0 2 2 2 0 TerY-C metal binding domain HypA PF01155.19 gi|294495295|ref|YP_003541788.1| - 8.9 6.4 17.5 1.8 8.6 0.2 3.6 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA PF00004.29 gi|294495296|ref|YP_003541789.1| - 7.9e-45 152.5 0.0 1.9e-44 151.3 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|294495296|ref|YP_003541789.1| - 5.9e-07 29.4 0.0 1.2e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|294495296|ref|YP_003541789.1| - 6.9e-06 26.3 0.0 1.8e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_14 PF13173.6 gi|294495296|ref|YP_003541789.1| - 1.4e-05 25.2 0.0 4.2e-05 23.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|294495296|ref|YP_003541789.1| - 3.5e-05 24.1 0.1 0.0022 18.3 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|294495296|ref|YP_003541789.1| - 3.9e-05 23.7 0.0 0.00015 21.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|294495296|ref|YP_003541789.1| - 4.8e-05 22.7 0.0 0.00017 20.9 0.0 1.9 1 1 1 2 2 2 1 TIP49 P-loop domain AAA_16 PF13191.6 gi|294495296|ref|YP_003541789.1| - 5.7e-05 23.6 0.0 0.0019 18.6 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 gi|294495296|ref|YP_003541789.1| - 0.00019 22.0 0.0 0.00039 21.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_lid_3 PF17862.1 gi|294495296|ref|YP_003541789.1| - 0.00019 21.2 0.0 0.00038 20.2 0.0 1.5 1 0 0 1 1 1 1 AAA+ lid domain AAA_24 PF13479.6 gi|294495296|ref|YP_003541789.1| - 0.0024 17.6 0.0 0.005 16.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|294495296|ref|YP_003541789.1| - 0.0037 17.4 0.0 0.0066 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|294495296|ref|YP_003541789.1| - 0.0042 16.6 0.1 0.029 13.9 0.0 2.3 2 1 0 2 2 1 1 P-loop containing dynein motor region ATPase PF06745.13 gi|294495296|ref|YP_003541789.1| - 0.0087 15.4 0.0 2.2 7.6 0.0 2.5 2 0 0 2 2 2 1 KaiC ATPase_2 PF01637.18 gi|294495296|ref|YP_003541789.1| - 0.011 15.7 0.2 0.032 14.1 0.0 1.9 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Mg_chelatase PF01078.21 gi|294495296|ref|YP_003541789.1| - 0.013 14.9 0.0 0.029 13.8 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|294495296|ref|YP_003541789.1| - 0.028 14.8 0.0 0.06 13.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_17 PF13207.6 gi|294495296|ref|YP_003541789.1| - 0.031 14.7 0.0 0.063 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|294495296|ref|YP_003541789.1| - 0.032 14.1 0.0 0.091 12.6 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|294495296|ref|YP_003541789.1| - 0.044 13.5 0.0 0.11 12.2 0.0 1.6 1 1 0 1 1 1 0 IstB-like ATP binding protein TsaE PF02367.17 gi|294495296|ref|YP_003541789.1| - 0.048 13.7 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|294495296|ref|YP_003541789.1| - 0.07 12.7 0.0 0.97 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 gi|294495296|ref|YP_003541789.1| - 0.093 12.1 0.0 1.8 8.0 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein ABC_tran PF00005.27 gi|294495296|ref|YP_003541789.1| - 0.11 13.1 0.0 0.27 11.8 0.0 1.7 1 0 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.12 gi|294495296|ref|YP_003541789.1| - 0.12 11.6 0.0 0.26 10.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Sigma54_activat PF00158.26 gi|294495296|ref|YP_003541789.1| - 0.14 11.8 0.0 0.92 9.2 0.0 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain PYC_OADA PF02436.18 gi|294495298|ref|YP_003541791.1| - 4.2e-56 189.8 0.0 7e-56 189.1 0.0 1.3 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|294495298|ref|YP_003541791.1| - 5.5e-48 163.8 0.0 7.2e-48 163.4 0.0 1.1 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|294495298|ref|YP_003541791.1| - 4.4e-16 58.5 5.2 1.4e-15 56.9 4.8 2.0 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|294495298|ref|YP_003541791.1| - 4.9e-07 29.5 1.4 0.0015 18.3 0.2 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.6 gi|294495298|ref|YP_003541791.1| - 0.003 17.5 3.6 0.012 15.6 2.2 2.6 2 1 0 2 2 2 1 RnfC Barrel sandwich hybrid domain HlyD_3 PF13437.6 gi|294495298|ref|YP_003541791.1| - 0.026 15.2 0.5 6.2 7.6 0.1 2.7 2 0 0 2 2 2 0 HlyD family secretion protein HlyD_D23 PF16576.5 gi|294495298|ref|YP_003541791.1| - 0.031 13.5 0.4 4.5 6.4 0.0 2.3 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion Peptidase_M23 PF01551.22 gi|294495298|ref|YP_003541791.1| - 0.14 12.4 0.4 0.82 9.9 0.1 2.2 1 1 1 2 2 2 0 Peptidase family M23 CPSase_L_D2 PF02786.17 gi|294495299|ref|YP_003541792.1| - 8.5e-77 257.4 0.0 1.4e-76 256.7 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|294495299|ref|YP_003541792.1| - 1.3e-49 167.4 0.1 5.4e-49 165.3 0.1 2.1 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|294495299|ref|YP_003541792.1| - 8.8e-43 144.8 0.0 2e-42 143.7 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|294495299|ref|YP_003541792.1| - 3.1e-12 46.5 0.0 7e-12 45.3 0.0 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|294495299|ref|YP_003541792.1| - 1.8e-05 24.4 0.0 4.2e-05 23.2 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|294495299|ref|YP_003541792.1| - 3.1e-05 24.1 0.0 5e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|294495299|ref|YP_003541792.1| - 8.2e-05 22.3 0.0 0.021 14.4 0.0 2.4 2 0 0 2 2 2 2 RimK-like ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|294495299|ref|YP_003541792.1| - 0.0032 17.2 0.0 0.007 16.1 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon GARS_A PF01071.19 gi|294495299|ref|YP_003541792.1| - 0.017 14.9 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Archease PF01951.16 gi|294495299|ref|YP_003541792.1| - 0.023 15.0 0.0 0.042 14.1 0.0 1.4 1 0 0 1 1 1 0 Archease protein family (MTH1598/TM1083) ATP-grasp_4 PF13535.6 gi|294495299|ref|YP_003541792.1| - 0.14 11.8 0.0 0.27 10.8 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain BPL_LplA_LipB PF03099.19 gi|294495300|ref|YP_003541793.1| - 2.1e-16 60.0 0.1 5.1e-16 58.8 0.0 1.6 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|294495300|ref|YP_003541793.1| - 6.4e-16 58.0 0.5 1.3e-15 57.1 0.5 1.5 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.17 gi|294495300|ref|YP_003541793.1| - 3.8e-07 29.9 0.0 8.4e-07 28.8 0.0 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain BPL_LplA_LipB_2 PF16917.5 gi|294495300|ref|YP_003541793.1| - 1.6e-05 24.5 0.0 2.1e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_24 PF13412.6 gi|294495300|ref|YP_003541793.1| - 0.00078 19.0 0.4 0.0019 17.7 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|294495300|ref|YP_003541793.1| - 0.003 17.9 0.0 0.0074 16.6 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator S-layer PF07752.11 gi|294495301|ref|YP_003541794.1| - 1.8e-12 46.9 0.1 2.6e-12 46.4 0.1 1.1 1 0 0 1 1 1 1 S-layer protein NdhO PF11910.8 gi|294495301|ref|YP_003541794.1| - 0.045 13.9 1.4 0.24 11.6 0.0 2.5 2 1 1 3 3 3 0 Cyanobacterial and plant NDH-1 subunit O DUF4115 PF13464.6 gi|294495301|ref|YP_003541794.1| - 0.17 12.1 0.0 2.2 8.6 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4115) DUF1664 PF07889.12 gi|294495302|ref|YP_003541795.1| - 1.3e-05 25.2 24.7 0.039 14.0 1.2 4.2 1 1 2 3 3 3 3 Protein of unknown function (DUF1664) MCPsignal PF00015.21 gi|294495302|ref|YP_003541795.1| - 2.1e-05 24.4 10.5 4.1e-05 23.5 0.9 2.9 2 2 1 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.12 gi|294495302|ref|YP_003541795.1| - 6.5e-05 23.0 25.5 0.0032 17.5 3.2 3.6 1 1 3 4 4 4 3 Laminin Domain II DUF3450 PF11932.8 gi|294495302|ref|YP_003541795.1| - 0.00019 20.8 29.0 0.013 14.8 4.3 3.5 1 1 3 4 4 4 2 Protein of unknown function (DUF3450) Laminin_I PF06008.14 gi|294495302|ref|YP_003541795.1| - 0.00043 20.1 32.7 0.025 14.3 16.7 2.2 1 1 1 2 2 2 2 Laminin Domain I DUF948 PF06103.11 gi|294495302|ref|YP_003541795.1| - 0.00066 19.9 14.0 0.95 9.8 0.1 4.4 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) MbeB_N PF04837.12 gi|294495302|ref|YP_003541795.1| - 0.00091 19.5 2.5 0.27 11.6 0.1 3.3 2 0 0 2 2 2 1 MbeB-like, N-term conserved region YabA PF06156.13 gi|294495302|ref|YP_003541795.1| - 0.0012 19.4 33.1 0.014 16.0 1.4 4.1 2 2 2 4 4 4 2 Initiation control protein YabA ALIX_LYPXL_bnd PF13949.6 gi|294495302|ref|YP_003541795.1| - 0.0014 18.0 32.9 0.0015 17.9 26.3 2.3 1 1 1 2 2 2 1 ALIX V-shaped domain binding to HIV CENP-F_leu_zip PF10473.9 gi|294495302|ref|YP_003541795.1| - 0.0022 18.0 17.7 0.0022 18.0 17.7 3.1 2 1 1 3 3 3 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 BLOC1_2 PF10046.9 gi|294495302|ref|YP_003541795.1| - 0.012 15.8 1.5 0.012 15.8 1.5 5.1 1 1 4 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_13 PF13166.6 gi|294495302|ref|YP_003541795.1| - 0.031 12.9 38.8 0.014 14.1 10.1 2.2 1 1 1 2 2 2 0 AAA domain PspA_IM30 PF04012.12 gi|294495302|ref|YP_003541795.1| - 0.038 13.6 28.8 0.17 11.4 1.8 4.0 1 1 3 4 4 3 0 PspA/IM30 family FUSC PF04632.12 gi|294495302|ref|YP_003541795.1| - 0.055 12.0 2.6 0.66 8.4 0.2 2.1 1 1 1 2 2 2 0 Fusaric acid resistance protein family EzrA PF06160.12 gi|294495302|ref|YP_003541795.1| - 0.06 11.5 42.1 0.31 9.1 8.6 3.0 1 1 2 3 3 3 0 Septation ring formation regulator, EzrA Baculo_PEP_C PF04513.12 gi|294495302|ref|YP_003541795.1| - 0.075 13.1 9.0 0.83 9.7 1.6 3.1 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Fez1 PF06818.15 gi|294495302|ref|YP_003541795.1| - 0.084 13.3 37.3 0.28 11.6 8.5 2.6 1 1 1 2 2 2 0 Fez1 DUF4201 PF13870.6 gi|294495302|ref|YP_003541795.1| - 0.099 12.4 42.3 0.16 11.7 17.2 3.4 1 1 1 3 3 3 0 Domain of unknown function (DUF4201) Syntaxin_2 PF14523.6 gi|294495302|ref|YP_003541795.1| - 0.11 12.9 37.5 2.9 8.3 5.6 4.2 2 2 2 4 4 4 0 Syntaxin-like protein DUF3584 PF12128.8 gi|294495302|ref|YP_003541795.1| - 0.11 9.9 36.3 0.15 9.6 36.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) HAUS-augmin3 PF14932.6 gi|294495302|ref|YP_003541795.1| - 0.12 11.9 32.3 0.44 10.1 11.6 3.2 1 1 2 3 3 3 0 HAUS augmin-like complex subunit 3 Spc7 PF08317.11 gi|294495302|ref|YP_003541795.1| - 0.14 11.1 41.8 0.11 11.3 17.3 2.8 1 1 2 3 3 3 0 Spc7 kinetochore protein Sec8_exocyst PF04048.14 gi|294495302|ref|YP_003541795.1| - 0.18 11.7 22.4 0.57 10.1 3.7 3.9 1 1 3 4 4 4 0 Sec8 exocyst complex component specific domain ERM PF00769.19 gi|294495302|ref|YP_003541795.1| - 0.22 11.3 36.4 0.2 11.5 16.6 2.3 1 1 1 2 2 2 0 Ezrin/radixin/moesin family Bacillus_HBL PF05791.11 gi|294495302|ref|YP_003541795.1| - 0.59 9.9 25.5 0.19 11.5 2.6 3.7 1 1 3 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) Filament PF00038.21 gi|294495302|ref|YP_003541795.1| - 0.64 9.5 39.8 2.9 7.4 34.3 2.9 1 1 0 1 1 1 0 Intermediate filament protein GAS PF13851.6 gi|294495302|ref|YP_003541795.1| - 0.65 9.3 46.5 0.43 9.9 19.5 3.0 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding Atg14 PF10186.9 gi|294495302|ref|YP_003541795.1| - 0.72 8.9 39.5 1.4 7.9 13.5 2.7 1 1 2 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF724 PF05266.14 gi|294495302|ref|YP_003541795.1| - 0.86 9.4 36.2 0.13 12.0 12.5 3.1 1 1 1 3 3 3 0 Protein of unknown function (DUF724) DUF2730 PF10805.8 gi|294495302|ref|YP_003541795.1| - 1.1 9.4 17.1 3.5 7.8 1.5 4.2 2 2 2 4 4 4 0 Protein of unknown function (DUF2730) TPR_MLP1_2 PF07926.12 gi|294495302|ref|YP_003541795.1| - 1.1 9.3 41.6 0.11 12.5 12.2 3.7 2 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein Fzo_mitofusin PF04799.13 gi|294495302|ref|YP_003541795.1| - 1.2 8.7 20.8 0.64 9.6 4.3 3.9 1 1 3 5 5 5 0 fzo-like conserved region YtxH PF12732.7 gi|294495302|ref|YP_003541795.1| - 1.2 9.7 24.9 2.4 8.7 0.1 5.1 3 2 0 3 3 2 0 YtxH-like protein TetR_C_24 PF17932.1 gi|294495302|ref|YP_003541795.1| - 1.3 9.3 6.1 0.29 11.4 0.7 2.6 3 1 0 3 3 2 0 Tetracyclin repressor-like, C-terminal domain IL5 PF02025.15 gi|294495302|ref|YP_003541795.1| - 1.4 9.3 12.2 1.2 9.4 0.6 3.1 2 2 1 3 3 3 0 Interleukin 5 APG6_N PF17675.1 gi|294495302|ref|YP_003541795.1| - 1.4 9.4 46.9 0.77 10.3 17.5 3.8 1 1 1 3 3 3 0 Apg6 coiled-coil region Sec34 PF04136.15 gi|294495302|ref|YP_003541795.1| - 1.6 8.6 26.9 2.5 7.9 3.7 4.0 1 1 3 4 4 4 0 Sec34-like family Fib_alpha PF08702.10 gi|294495302|ref|YP_003541795.1| - 1.6 8.9 33.0 0.6 10.3 9.6 3.7 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family PI3K_P85_iSH2 PF16454.5 gi|294495302|ref|YP_003541795.1| - 1.7 8.2 39.5 7.7 6.1 15.9 3.2 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain CENP-H PF05837.12 gi|294495302|ref|YP_003541795.1| - 2.1 8.8 36.6 3 8.3 10.0 4.2 1 1 3 4 4 4 0 Centromere protein H (CENP-H) TolA_bind_tri PF16331.5 gi|294495302|ref|YP_003541795.1| - 2.7 8.1 16.8 0.17 12.0 0.9 4.4 3 2 2 5 5 5 0 TolA binding protein trimerisation TSC22 PF01166.18 gi|294495302|ref|YP_003541795.1| - 2.7 8.4 0.0 2.7 8.4 0.0 5.6 4 2 2 6 6 5 0 TSC-22/dip/bun family ADIP PF11559.8 gi|294495302|ref|YP_003541795.1| - 3 7.9 38.1 0.098 12.7 18.0 3.2 2 1 0 2 2 2 0 Afadin- and alpha -actinin-Binding DUF848 PF05852.11 gi|294495302|ref|YP_003541795.1| - 3.1 7.9 32.0 0.041 14.0 4.4 3.9 1 1 2 4 4 4 0 Gammaherpesvirus protein of unknown function (DUF848) DUF836 PF05768.14 gi|294495302|ref|YP_003541795.1| - 3.3 8.2 6.9 1.2 9.6 0.9 2.8 2 1 0 2 2 2 0 Glutaredoxin-like domain (DUF836) KASH_CCD PF14662.6 gi|294495302|ref|YP_003541795.1| - 3.3 7.5 37.8 2.7 7.8 15.9 2.6 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH DUF4407 PF14362.6 gi|294495302|ref|YP_003541795.1| - 4.1 6.7 29.3 19 4.5 16.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) DUF812 PF05667.11 gi|294495302|ref|YP_003541795.1| - 4.7 6.0 36.4 3.2 6.5 11.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF812) Snapin_Pallidin PF14712.6 gi|294495302|ref|YP_003541795.1| - 5.6 7.5 25.4 0.88 10.0 4.2 4.1 1 1 4 5 5 5 0 Snapin/Pallidin ThiS PF02597.20 gi|294495302|ref|YP_003541795.1| - 6.4 7.5 7.8 12 6.6 0.7 3.2 3 0 0 3 3 2 0 ThiS family ApoO PF09769.9 gi|294495302|ref|YP_003541795.1| - 9 6.3 7.7 24 4.9 0.0 3.9 2 2 2 4 4 4 0 Apolipoprotein O ATG16 PF08614.11 gi|294495302|ref|YP_003541795.1| - 9.5 6.4 32.7 3.9 7.6 8.1 3.1 1 1 0 2 2 2 0 Autophagy protein 16 (ATG16) UPF0184 PF03670.13 gi|294495302|ref|YP_003541795.1| - 9.9 6.6 12.3 2.5 8.6 2.1 4.1 2 2 2 4 4 4 0 Uncharacterised protein family (UPF0184) LXG PF04740.12 gi|294495303|ref|YP_003541796.1| - 0.017 14.8 17.3 0.02 14.6 15.1 2.2 1 1 1 2 2 2 0 LXG domain of WXG superfamily Spc7 PF08317.11 gi|294495303|ref|YP_003541796.1| - 0.046 12.6 30.5 0.23 10.3 15.6 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF3150 PF11348.8 gi|294495303|ref|YP_003541796.1| - 0.36 10.0 7.1 0.16 11.2 4.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3150) CorA PF01544.18 gi|294495303|ref|YP_003541796.1| - 0.89 8.8 12.9 4 6.7 5.3 2.3 1 1 0 2 2 2 0 CorA-like Mg2+ transporter protein DUF148 PF02520.17 gi|294495303|ref|YP_003541796.1| - 0.96 9.6 18.3 0.8 9.8 4.3 3.0 2 1 0 2 2 2 0 Domain of unknown function DUF148 DUF4200 PF13863.6 gi|294495303|ref|YP_003541796.1| - 1.3 9.4 28.2 0.51 10.7 5.1 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4200) DUF883 PF05957.13 gi|294495303|ref|YP_003541796.1| - 1.6 9.4 10.0 4.4 8.0 2.0 2.6 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DHR10 PF18595.1 gi|294495303|ref|YP_003541796.1| - 2.2 8.4 31.7 1.1 9.3 7.4 3.1 2 1 1 3 3 3 0 Designed helical repeat protein 10 domain Cauli_AT PF03233.13 gi|294495303|ref|YP_003541796.1| - 2.2 8.2 24.4 0.15 12.0 1.8 3.1 1 1 1 3 3 3 0 Aphid transmission protein HIP1_clath_bdg PF16515.5 gi|294495303|ref|YP_003541796.1| - 3.2 8.4 24.9 4.5 7.9 5.8 2.9 2 1 1 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 PBECR1 PF18809.1 gi|294495303|ref|YP_003541796.1| - 3.7 8.3 13.0 0.092 13.4 1.1 2.6 2 1 1 3 3 3 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1 DUF4140 PF13600.6 gi|294495303|ref|YP_003541796.1| - 4.2 7.9 16.0 0.53 10.7 0.4 3.5 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) TMPIT PF07851.13 gi|294495303|ref|YP_003541796.1| - 4.6 6.4 24.4 4.4 6.4 9.3 2.1 1 1 1 2 2 2 0 TMPIT-like protein DivIVA PF05103.13 gi|294495303|ref|YP_003541796.1| - 4.8 7.3 23.7 0.89 9.6 0.2 3.7 1 1 2 3 3 3 0 DivIVA protein DUF424 PF04242.13 gi|294495304|ref|YP_003541797.1| - 1.6e-27 95.6 0.0 1.8e-27 95.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) MCM PF00493.23 gi|294495305|ref|YP_003541798.1| - 1.3e-94 315.5 0.0 1.9e-94 315.0 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|294495305|ref|YP_003541798.1| - 2.5e-36 124.3 0.0 4.5e-36 123.5 0.0 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|294495305|ref|YP_003541798.1| - 1.5e-26 92.6 0.9 4.1e-26 91.2 0.9 1.8 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|294495305|ref|YP_003541798.1| - 3.1e-10 40.6 1.4 8e-10 39.2 0.3 2.3 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|294495305|ref|YP_003541798.1| - 2.9e-07 30.1 0.1 5.7e-05 22.6 0.0 2.3 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|294495305|ref|YP_003541798.1| - 1.7e-06 28.1 0.0 4.1e-06 26.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|294495305|ref|YP_003541798.1| - 0.0033 17.3 0.0 0.015 15.1 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF573 PF04504.14 gi|294495305|ref|YP_003541798.1| - 0.0092 16.6 0.8 0.044 14.4 0.3 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF573 AAA_16 PF13191.6 gi|294495305|ref|YP_003541798.1| - 0.032 14.6 0.9 0.16 12.4 0.0 2.5 2 1 0 2 2 2 0 AAA ATPase domain SSB PF00436.25 gi|294495305|ref|YP_003541798.1| - 0.14 12.2 0.0 0.33 11.0 0.0 1.6 1 0 0 1 1 1 0 Single-strand binding protein family RcpC PF16976.5 gi|294495305|ref|YP_003541798.1| - 0.14 12.2 2.3 0.19 11.7 0.0 2.4 4 0 0 4 4 4 0 Flp pilus assembly protein RcpC/CpaB YtzH PF14165.6 gi|294495305|ref|YP_003541798.1| - 1.4 9.3 4.8 70 3.9 0.1 3.9 4 0 0 4 4 4 0 YtzH-like protein SpoU_methylase PF00588.19 gi|294495306|ref|YP_003541799.1| - 6.4e-34 117.1 0.0 9.3e-34 116.6 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|294495306|ref|YP_003541799.1| - 0.00078 19.3 0.0 0.002 18.0 0.0 1.7 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase Rubrerythrin PF02915.17 gi|294495307|ref|YP_003541800.1| - 9.5e-14 52.0 1.6 3.5e-12 46.9 1.6 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|294495307|ref|YP_003541800.1| - 0.00026 21.0 2.1 0.014 15.3 2.1 2.0 1 1 0 1 1 1 1 Ferritin-like domain FA_desaturase_2 PF03405.14 gi|294495307|ref|YP_003541800.1| - 0.0077 15.1 0.2 2.5 6.9 0.0 2.0 1 1 1 2 2 2 2 Fatty acid desaturase NIR_SIR PF01077.22 gi|294495308|ref|YP_003541801.1| - 5.9e-32 110.4 0.0 8.4e-32 109.9 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|294495308|ref|YP_003541801.1| - 6.2e-14 51.6 0.0 1.3e-13 50.6 0.0 1.6 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain GcpE PF04551.14 gi|294495308|ref|YP_003541801.1| - 0.019 14.1 0.1 0.025 13.7 0.1 1.3 1 0 0 1 1 1 0 GcpE protein Nitrate_red_gam PF02665.14 gi|294495309|ref|YP_003541802.1| - 0.0031 17.1 0.7 0.0031 17.1 0.7 3.3 1 1 1 3 3 3 2 Nitrate reductase gamma subunit DUF1218 PF06749.12 gi|294495309|ref|YP_003541802.1| - 0.61 10.7 4.0 13 6.4 0.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1218) CCG PF02754.16 gi|294495310|ref|YP_003541803.1| - 1.7e-28 98.7 6.3 2.1e-16 59.9 0.0 2.9 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|294495310|ref|YP_003541803.1| - 3.2e-11 43.5 3.4 3.2e-11 43.5 3.4 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|294495310|ref|YP_003541803.1| - 2e-06 28.2 5.0 2e-06 28.2 5.0 2.9 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495310|ref|YP_003541803.1| - 1.6e-05 25.8 4.6 1.6e-05 25.8 4.6 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|294495310|ref|YP_003541803.1| - 0.00012 22.1 11.1 0.00012 22.1 11.1 3.5 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|294495310|ref|YP_003541803.1| - 0.00033 21.2 11.9 0.00033 21.2 11.9 3.0 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|294495310|ref|YP_003541803.1| - 0.00058 20.0 3.4 0.74 10.0 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|294495310|ref|YP_003541803.1| - 0.0029 17.7 8.7 0.19 11.9 0.8 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294495310|ref|YP_003541803.1| - 0.0042 17.2 13.1 0.0042 17.2 13.1 3.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294495310|ref|YP_003541803.1| - 0.011 15.8 2.0 0.011 15.8 2.0 3.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|294495310|ref|YP_003541803.1| - 0.016 16.1 3.0 0.016 16.1 3.0 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|294495310|ref|YP_003541803.1| - 0.14 13.1 8.9 1.2 10.1 0.3 3.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|294495310|ref|YP_003541803.1| - 2.4 8.1 21.0 0.079 12.8 3.4 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|294495310|ref|YP_003541803.1| - 3.4 7.9 21.3 0.059 13.5 2.6 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain DUF116 PF01976.17 gi|294495311|ref|YP_003541804.1| - 3.1e-46 156.7 1.7 3.7e-46 156.4 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 DUF116 PF01976.17 gi|294495312|ref|YP_003541805.1| - 3.2e-42 143.7 0.0 4e-42 143.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 zf-C2H2_11 PF16622.5 gi|294495312|ref|YP_003541805.1| - 0.012 15.4 6.6 0.95 9.3 0.1 2.6 2 0 0 2 2 2 0 zinc-finger C2H2-type SelR PF01641.18 gi|294495313|ref|YP_003541806.1| - 9e-54 180.7 0.0 1e-53 180.5 0.0 1.0 1 0 0 1 1 1 1 SelR domain zinc_ribbon_10 PF10058.9 gi|294495313|ref|YP_003541806.1| - 0.005 16.5 0.8 0.3 10.8 0.0 2.2 2 0 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein Zn_ribbon_SprT PF17283.2 gi|294495313|ref|YP_003541806.1| - 0.03 14.2 0.0 0.096 12.6 0.0 1.8 1 1 0 1 1 1 0 SprT-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|294495313|ref|YP_003541806.1| - 0.087 12.4 4.3 4.8 6.8 0.1 2.9 2 1 0 2 2 2 0 TFIIB zinc-binding ComS PF17584.2 gi|294495313|ref|YP_003541806.1| - 0.12 11.9 0.1 0.23 11.0 0.1 1.5 1 0 0 1 1 1 0 Bacillus competence protein S zf_UBZ PF18439.1 gi|294495313|ref|YP_003541806.1| - 0.18 11.4 0.7 16 5.2 0.1 2.5 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-NADH-PPase PF09297.11 gi|294495313|ref|YP_003541806.1| - 8.4 6.2 8.3 13 5.5 0.5 2.8 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Usp PF00582.26 gi|294495314|ref|YP_003541807.1| - 1e-33 116.8 0.7 1.2e-33 116.6 0.7 1.0 1 0 0 1 1 1 1 Universal stress protein family ABC_tran PF00005.27 gi|294495315|ref|YP_003541808.1| - 1.4e-32 113.0 0.0 2e-32 112.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|294495315|ref|YP_003541808.1| - 1.7e-09 37.9 0.1 3.4e-05 23.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|294495315|ref|YP_003541808.1| - 7.1e-06 25.7 0.1 1.3e-05 24.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|294495315|ref|YP_003541808.1| - 0.00017 21.5 0.0 0.0004 20.2 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|294495315|ref|YP_003541808.1| - 0.00028 21.4 0.0 0.00036 21.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|294495315|ref|YP_003541808.1| - 0.00029 20.3 0.3 0.017 14.5 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|294495315|ref|YP_003541808.1| - 0.00032 21.0 0.0 0.0005 20.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|294495315|ref|YP_003541808.1| - 0.0013 19.2 0.0 0.0015 18.9 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|294495315|ref|YP_003541808.1| - 0.0022 18.0 0.0 0.0039 17.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_27 PF13514.6 gi|294495315|ref|YP_003541808.1| - 0.0029 17.2 0.1 0.0055 16.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|294495315|ref|YP_003541808.1| - 0.027 14.4 0.0 0.04 13.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|294495315|ref|YP_003541808.1| - 0.027 14.4 0.0 0.055 13.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|294495315|ref|YP_003541808.1| - 0.029 14.1 0.0 0.033 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|294495315|ref|YP_003541808.1| - 0.032 14.3 0.0 0.059 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|294495315|ref|YP_003541808.1| - 0.041 13.6 0.0 0.062 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|294495315|ref|YP_003541808.1| - 0.045 13.7 0.0 0.061 13.2 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ATPase PF06745.13 gi|294495315|ref|YP_003541808.1| - 0.052 12.9 0.0 0.079 12.3 0.0 1.4 1 0 0 1 1 1 0 KaiC PRK PF00485.18 gi|294495315|ref|YP_003541808.1| - 0.052 13.3 0.0 0.095 12.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_28 PF13521.6 gi|294495315|ref|YP_003541808.1| - 0.063 13.5 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|294495315|ref|YP_003541808.1| - 0.085 12.2 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|294495315|ref|YP_003541808.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|294495315|ref|YP_003541808.1| - 0.14 10.9 0.0 0.21 10.4 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein IstB_IS21 PF01695.17 gi|294495315|ref|YP_003541808.1| - 0.14 11.9 0.1 2.2 8.0 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein MMR_HSR1 PF01926.23 gi|294495315|ref|YP_003541808.1| - 0.17 12.0 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Cytidylate_kin PF02224.18 gi|294495315|ref|YP_003541808.1| - 0.19 11.4 0.1 0.29 10.8 0.1 1.2 1 0 0 1 1 1 0 Cytidylate kinase CcmB PF03379.13 gi|294495316|ref|YP_003541809.1| - 1.1e-33 116.6 18.0 1.4e-33 116.2 18.0 1.0 1 0 0 1 1 1 1 CcmB protein ABC2_membrane PF01061.24 gi|294495316|ref|YP_003541809.1| - 5.7e-09 35.7 20.2 5.7e-09 35.7 20.2 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|294495316|ref|YP_003541809.1| - 9.2e-09 34.9 20.3 9.2e-09 34.9 20.3 2.3 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|294495316|ref|YP_003541809.1| - 0.00055 20.0 19.6 0.00055 20.0 19.6 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|294495316|ref|YP_003541809.1| - 0.00057 19.5 25.8 0.00091 18.8 25.8 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|294495316|ref|YP_003541809.1| - 0.006 15.9 27.5 0.26 10.5 15.0 2.6 1 1 1 2 2 2 2 ABC-2 family transporter protein Cytochrom_C_asm PF01578.20 gi|294495317|ref|YP_003541810.1| - 6.2e-26 91.5 17.7 6.2e-26 91.5 17.7 1.9 2 0 0 2 2 2 1 Cytochrome C assembly protein Oxidored_FMN PF00724.20 gi|294495318|ref|YP_003541811.1| - 1.3e-68 231.8 0.0 1.5e-68 231.6 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.21 gi|294495318|ref|YP_003541811.1| - 2.9e-05 23.6 0.0 7.1e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|294495318|ref|YP_003541811.1| - 0.00025 20.2 0.3 0.00077 18.6 0.0 1.8 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|294495318|ref|YP_003541811.1| - 0.019 14.3 0.1 0.033 13.6 0.1 1.4 1 1 0 1 1 1 0 Nitronate monooxygenase Pantoate_transf PF02548.15 gi|294495318|ref|YP_003541811.1| - 0.084 12.2 0.0 0.37 10.2 0.0 2.0 1 1 1 2 2 2 0 Ketopantoate hydroxymethyltransferase S4 PF01479.25 gi|294495319|ref|YP_003541812.1| - 4.8e-13 48.6 0.0 8.3e-13 47.8 0.0 1.4 1 0 0 1 1 1 1 S4 domain FtsJ PF01728.19 gi|294495319|ref|YP_003541812.1| - 1e-09 38.7 0.0 1.7e-09 38.0 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|294495319|ref|YP_003541812.1| - 2e-05 24.4 0.0 4.2e-05 23.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|294495319|ref|YP_003541812.1| - 2.3e-05 25.0 0.0 4.1e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain S4_2 PF13275.6 gi|294495319|ref|YP_003541812.1| - 0.00071 19.3 0.0 0.0016 18.2 0.0 1.6 1 0 0 1 1 1 1 S4 domain Methyltransf_24 PF13578.6 gi|294495319|ref|YP_003541812.1| - 0.0011 20.0 0.0 0.0018 19.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|294495319|ref|YP_003541812.1| - 0.0036 17.9 0.0 0.0062 17.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|294495319|ref|YP_003541812.1| - 0.0051 15.9 0.0 0.0067 15.6 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin CMAS PF02353.20 gi|294495319|ref|YP_003541812.1| - 0.077 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|294495319|ref|YP_003541812.1| - 0.086 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain rRNA_methylase PF06962.12 gi|294495319|ref|YP_003541812.1| - 0.15 12.0 0.0 0.27 11.2 0.0 1.3 1 0 0 1 1 1 0 Putative rRNA methylase DUF2119 PF09892.9 gi|294495320|ref|YP_003541813.1| - 6.4e-65 218.1 0.0 7.3e-65 217.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2119) Mic1 PF07035.12 gi|294495320|ref|YP_003541813.1| - 0.098 12.4 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Colon cancer-associated protein Mic1-like Gp-FAR-1 PF05823.12 gi|294495320|ref|YP_003541813.1| - 0.099 13.0 0.1 0.15 12.4 0.1 1.2 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) DUF3877 PF12993.7 gi|294495320|ref|YP_003541813.1| - 0.16 11.8 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function, E. rectale Gene description (DUF3877) Cpn60_TCP1 PF00118.24 gi|294495321|ref|YP_003541814.1| - 5.2e-162 539.9 18.1 6e-162 539.7 18.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Nitro_FeMo-Co PF02579.17 gi|294495321|ref|YP_003541814.1| - 0.035 14.4 0.9 0.29 11.5 0.0 2.8 3 0 0 3 3 3 0 Dinitrogenase iron-molybdenum cofactor TP_methylase PF00590.20 gi|294495322|ref|YP_003541815.1| - 5e-16 59.3 0.0 6.1e-16 59.0 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF87 PF01935.17 gi|294495323|ref|YP_003541816.1| - 3.7e-39 135.1 0.0 7e-39 134.2 0.0 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|294495323|ref|YP_003541816.1| - 1.1e-06 28.7 0.1 2.2e-06 27.7 0.1 1.5 1 0 0 1 1 1 1 HAS barrel domain DUF853 PF05872.12 gi|294495323|ref|YP_003541816.1| - 0.00045 18.9 0.0 0.57 8.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|294495323|ref|YP_003541816.1| - 0.00078 18.5 0.0 0.006 15.6 0.0 2.2 2 1 0 2 2 2 1 AAA-like domain AAA_22 PF13401.6 gi|294495323|ref|YP_003541816.1| - 0.0076 16.5 0.1 4.8 7.5 0.0 2.9 2 1 0 3 3 3 2 AAA domain DEAD PF00270.29 gi|294495323|ref|YP_003541816.1| - 0.019 14.7 0.0 4.2 7.1 0.0 2.9 2 1 0 3 3 3 0 DEAD/DEAH box helicase TrwB_AAD_bind PF10412.9 gi|294495323|ref|YP_003541816.1| - 0.03 13.2 0.0 0.82 8.5 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DUF357 PF04010.13 gi|294495324|ref|YP_003541817.1| - 4.6e-30 103.5 0.1 5.4e-30 103.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) TPR_1 PF00515.28 gi|294495324|ref|YP_003541817.1| - 0.077 12.9 0.6 1.1 9.1 0.0 2.5 2 1 0 2 2 2 0 Tetratricopeptide repeat DUF555 PF04475.12 gi|294495325|ref|YP_003541818.1| - 1.8e-48 163.1 0.1 2e-48 162.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) Dodecin PF07311.12 gi|294495325|ref|YP_003541818.1| - 0.061 13.6 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 Dodecin PfkB PF00294.24 gi|294495326|ref|YP_003541819.1| - 1.3e-42 146.2 0.0 2.1e-42 145.5 0.0 1.3 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Adenosine_kin PF04008.14 gi|294495326|ref|YP_003541819.1| - 0.075 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Adenosine specific kinase RmuC PF02646.16 gi|294495326|ref|YP_003541819.1| - 0.12 11.5 0.0 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 RmuC family PEP-utilizers_C PF02896.18 gi|294495327|ref|YP_003541820.1| - 9.6e-93 310.5 0.0 1.5e-92 309.8 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.19 gi|294495327|ref|YP_003541820.1| - 1.5e-63 215.0 0.0 5.7e-37 127.7 0.0 3.3 1 1 2 3 3 3 3 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|294495327|ref|YP_003541820.1| - 2e-28 97.9 1.6 2e-28 97.9 1.6 2.0 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain HAS-barrel PF09378.10 gi|294495327|ref|YP_003541820.1| - 0.06 13.5 0.1 0.25 11.5 0.1 2.1 1 0 0 1 1 1 0 HAS barrel domain Phage_connect_1 PF05135.13 gi|294495327|ref|YP_003541820.1| - 0.11 13.0 0.1 0.4 11.2 0.1 1.9 1 0 0 1 1 1 0 Phage gp6-like head-tail connector protein Gar1 PF04410.14 gi|294495328|ref|YP_003541821.1| - 7.7e-08 32.3 0.1 8.1e-08 32.2 0.1 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.19 gi|294495329|ref|YP_003541822.1| - 4.3e-44 148.4 1.2 2.2e-21 75.7 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|294495329|ref|YP_003541822.1| - 2.3e-17 62.2 1.5 2.3e-17 62.2 1.5 1.7 2 0 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|294495329|ref|YP_003541822.1| - 2.5e-05 24.1 0.5 6.5e-05 22.8 0.5 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Sigma70_r4 PF04545.16 gi|294495329|ref|YP_003541822.1| - 3.4e-05 23.3 0.5 0.019 14.4 0.1 3.2 2 0 0 2 2 2 1 Sigma-70, region 4 Lar_restr_allev PF14354.6 gi|294495329|ref|YP_003541822.1| - 0.0042 17.4 0.6 0.05 14.0 0.3 2.6 2 0 0 2 2 2 1 Restriction alleviation protein Lar RPA_interact_C PF14768.6 gi|294495329|ref|YP_003541822.1| - 0.014 16.0 0.0 0.98 10.0 0.0 2.4 2 0 0 2 2 2 0 Replication protein A interacting C-terminal HTH_AsnC-type PF13404.6 gi|294495329|ref|YP_003541822.1| - 0.016 15.0 0.9 0.057 13.3 0.2 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DZR PF12773.7 gi|294495329|ref|YP_003541822.1| - 0.024 14.7 1.1 0.12 12.4 0.3 2.2 2 0 0 2 2 2 0 Double zinc ribbon Cyclin_C PF02984.19 gi|294495329|ref|YP_003541822.1| - 0.052 13.6 0.0 8.4 6.5 0.0 2.4 2 0 0 2 2 2 0 Cyclin, C-terminal domain Elf1 PF05129.13 gi|294495329|ref|YP_003541822.1| - 0.053 13.6 1.9 0.064 13.3 0.4 1.9 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.6 gi|294495329|ref|YP_003541822.1| - 0.11 12.0 2.5 0.87 9.1 2.5 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|294495329|ref|YP_003541822.1| - 0.17 12.1 1.3 2.3 8.4 0.5 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HTH_31 PF13560.6 gi|294495329|ref|YP_003541822.1| - 0.21 12.0 4.1 7.7 6.9 0.1 3.4 3 0 0 3 3 3 0 Helix-turn-helix domain zf-ACC PF17848.1 gi|294495329|ref|YP_003541822.1| - 0.32 11.1 3.5 10 6.3 2.0 2.9 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Zn-ribbon_8 PF09723.10 gi|294495329|ref|YP_003541822.1| - 0.35 11.0 5.2 0.62 10.2 0.3 3.1 2 1 1 3 3 3 0 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|294495329|ref|YP_003541822.1| - 0.42 10.4 1.8 3.1 7.6 1.8 2.2 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-Mss51 PF13824.6 gi|294495329|ref|YP_003541822.1| - 0.44 10.7 3.3 23 5.2 0.3 3.3 3 1 1 4 4 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Trm112p PF03966.16 gi|294495329|ref|YP_003541822.1| - 0.53 10.9 2.3 18 6.0 2.3 2.6 1 1 0 1 1 1 0 Trm112p-like protein Nudix_N_2 PF14803.6 gi|294495329|ref|YP_003541822.1| - 1.5 8.8 5.6 0.59 10.1 1.2 2.7 2 0 0 2 2 2 0 Nudix N-terminal DNA_RNApol_7kD PF03604.13 gi|294495329|ref|YP_003541822.1| - 2 8.2 4.2 3.3 7.5 0.1 2.9 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.16 gi|294495329|ref|YP_003541822.1| - 8.6 6.3 6.2 19 5.3 0.2 3.0 2 1 1 3 3 3 0 RNA polymerases M/15 Kd subunit LysE PF01810.18 gi|294495330|ref|YP_003541823.1| - 2.9e-28 98.6 16.0 3.6e-28 98.3 16.0 1.1 1 0 0 1 1 1 1 LysE type translocator Met_10 PF02475.16 gi|294495331|ref|YP_003541824.1| - 3.8e-62 209.6 0.0 4.9e-62 209.2 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|294495331|ref|YP_003541824.1| - 4.1e-17 61.8 0.0 7.7e-17 60.9 0.0 1.5 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_25 PF13649.6 gi|294495331|ref|YP_003541824.1| - 9.6e-09 35.8 0.0 1.9e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|294495331|ref|YP_003541824.1| - 1.8e-06 27.6 0.0 2.8e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|294495331|ref|YP_003541824.1| - 3.9e-06 26.7 0.0 5.9e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|294495331|ref|YP_003541824.1| - 5.8e-06 26.0 0.0 9.6e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|294495331|ref|YP_003541824.1| - 1.1e-05 25.2 0.0 2.1e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|294495331|ref|YP_003541824.1| - 1.3e-05 25.8 0.0 2.8e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|294495331|ref|YP_003541824.1| - 5.7e-05 22.8 0.0 0.0001 21.9 0.0 1.4 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltr_RsmB-F PF01189.17 gi|294495331|ref|YP_003541824.1| - 0.0015 18.2 0.0 0.0026 17.4 0.0 1.5 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F TRM PF02005.16 gi|294495331|ref|YP_003541824.1| - 0.0024 17.1 0.0 0.0036 16.5 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase tRNA_U5-meth_tr PF05958.11 gi|294495331|ref|YP_003541824.1| - 0.003 16.6 0.0 0.0044 16.1 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase ADH_zinc_N PF00107.26 gi|294495331|ref|YP_003541824.1| - 0.008 16.2 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TehB PF03848.14 gi|294495331|ref|YP_003541824.1| - 0.014 14.8 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB PRMT5 PF05185.16 gi|294495331|ref|YP_003541824.1| - 0.023 14.6 0.0 0.04 13.8 0.0 1.3 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase RrnaAD PF00398.20 gi|294495331|ref|YP_003541824.1| - 0.092 11.8 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DNA_methylase PF00145.17 gi|294495331|ref|YP_003541824.1| - 0.21 10.9 0.0 0.3 10.4 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Zip PF02535.22 gi|294495333|ref|YP_003541826.1| - 6.3e-20 71.7 22.6 6.4e-15 55.2 14.1 2.2 1 1 1 2 2 2 2 ZIP Zinc transporter DUF3206 PF11472.8 gi|294495333|ref|YP_003541826.1| - 0.028 14.4 0.0 0.05 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3206) Cation_efflux PF01545.21 gi|294495333|ref|YP_003541826.1| - 2.6 7.7 15.5 0.7 9.6 0.6 3.4 2 1 1 3 3 3 0 Cation efflux family DUF5423 PF17461.2 gi|294495333|ref|YP_003541826.1| - 9.5 5.0 5.4 1.3 7.8 0.5 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5423) URO-D PF01208.17 gi|294495334|ref|YP_003541827.1| - 8.7e-66 222.4 0.0 9.8e-66 222.3 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) EamA PF00892.20 gi|294495335|ref|YP_003541828.1| - 4.7e-17 62.4 37.7 8.6e-12 45.4 11.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family BTP PF05232.12 gi|294495335|ref|YP_003541828.1| - 0.057 13.5 0.3 0.057 13.5 0.3 3.8 4 0 0 4 4 4 0 Chlorhexidine efflux transporter bPH_1 PF08000.11 gi|294495336|ref|YP_003541829.1| - 2.2e-46 156.9 0.0 2.5e-46 156.7 0.0 1.0 1 0 0 1 1 1 1 Bacterial PH domain bPH_3 PF14470.6 gi|294495336|ref|YP_003541829.1| - 9.9e-05 22.6 0.2 0.00013 22.3 0.2 1.3 1 1 0 1 1 1 1 Bacterial PH domain HicB_lk_antitox PF15919.5 gi|294495337|ref|YP_003541830.1| - 0.00028 21.0 0.1 0.0003 20.9 0.1 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF3387 PF11867.8 gi|294495338|ref|YP_003541831.1| - 2.8e-20 72.9 0.4 3.3e-20 72.7 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) SSF PF00474.17 gi|294495339|ref|YP_003541832.1| - 2.2e-72 244.2 26.6 2.8e-72 243.8 26.6 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family GPHR_N PF12537.8 gi|294495339|ref|YP_003541832.1| - 2.4 8.3 5.5 40 4.4 0.2 3.6 4 0 0 4 4 4 0 The Golgi pH Regulator (GPHR) Family N-terminal DUF523 PF04463.12 gi|294495340|ref|YP_003541833.1| - 2.1e-31 108.8 0.0 3.2e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF1722 PF08349.11 gi|294495340|ref|YP_003541833.1| - 1.5e-22 80.1 0.0 2.8e-22 79.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) DPRP PF04244.13 gi|294495341|ref|YP_003541834.1| - 3.5e-48 164.4 0.1 6.8e-48 163.4 0.1 1.5 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein FERM_f0 PF16511.5 gi|294495341|ref|YP_003541834.1| - 0.066 13.5 0.7 0.19 12.1 0.1 2.0 2 0 0 2 2 2 0 N-terminal or F0 domain of Talin-head FERM YbjQ_1 PF01906.17 gi|294495342|ref|YP_003541835.1| - 1.1e-31 109.5 1.7 1.3e-31 109.3 1.7 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.8 gi|294495342|ref|YP_003541835.1| - 0.012 16.0 0.7 0.029 14.8 0.2 1.7 1 1 1 2 2 2 0 Selenium binding protein Macro PF01661.21 gi|294495342|ref|YP_003541835.1| - 0.082 13.0 0.0 0.089 12.8 0.0 1.1 1 0 0 1 1 1 0 Macro domain DUF4156 PF13698.6 gi|294495342|ref|YP_003541835.1| - 0.15 12.4 0.3 0.29 11.5 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4156) MS_channel PF00924.18 gi|294495343|ref|YP_003541836.1| - 1.1e-47 162.3 1.4 1.4e-47 161.9 1.4 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|294495343|ref|YP_003541836.1| - 0.0011 18.9 0.5 0.0011 18.9 0.5 2.2 3 0 0 3 3 3 1 Conserved TM helix DUF1284 PF06935.11 gi|294495344|ref|YP_003541837.1| - 1.1e-25 90.0 1.9 1.5e-25 89.6 1.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1284) DUF166 PF02593.14 gi|294495344|ref|YP_003541837.1| - 0.011 15.3 0.1 0.012 15.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function Fasciclin PF02469.22 gi|294495345|ref|YP_003541838.1| - 4.3e-28 98.1 0.0 5.3e-28 97.8 0.0 1.0 1 0 0 1 1 1 1 Fasciclin domain KH_1 PF00013.29 gi|294495346|ref|YP_003541839.1| - 4.4e-12 45.7 8.4 5.1e-08 32.6 0.7 2.2 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|294495346|ref|YP_003541839.1| - 0.00039 20.2 6.4 0.16 11.8 0.2 2.8 3 0 0 3 3 3 2 KH domain KH_4 PF13083.6 gi|294495346|ref|YP_003541839.1| - 0.17 11.8 5.7 6.4 6.7 0.2 2.9 2 1 0 2 2 2 0 KH domain KH_5 PF13184.6 gi|294495346|ref|YP_003541839.1| - 0.66 10.1 2.8 9.9 6.3 0.3 2.5 2 1 0 2 2 2 0 NusA-like KH domain RIO1 PF01163.22 gi|294495347|ref|YP_003541840.1| - 2.9e-59 199.8 0.1 4e-59 199.4 0.1 1.1 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|294495347|ref|YP_003541840.1| - 2.2e-07 30.5 0.1 4e-07 29.7 0.1 1.3 1 1 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|294495347|ref|YP_003541840.1| - 7.2e-05 22.2 0.0 0.0049 16.3 0.0 2.3 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 gi|294495347|ref|YP_003541840.1| - 0.0011 17.9 0.1 0.0017 17.2 0.1 1.3 1 0 0 1 1 1 1 Fungal protein kinase APH PF01636.23 gi|294495347|ref|YP_003541840.1| - 0.0028 17.6 0.0 0.18 11.7 0.0 2.4 1 1 1 2 2 2 1 Phosphotransferase enzyme family HlyD_3 PF13437.6 gi|294495347|ref|YP_003541840.1| - 0.042 14.5 0.0 0.19 12.5 0.0 2.2 2 1 1 3 3 3 0 HlyD family secretion protein HTH_5 PF01022.20 gi|294495349|ref|YP_003541842.1| - 1.8e-13 50.1 1.1 2.7e-13 49.6 1.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|294495349|ref|YP_003541842.1| - 4e-10 39.6 0.0 5e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|294495349|ref|YP_003541842.1| - 0.00011 22.3 0.0 0.00033 20.8 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain TGT PF01702.18 gi|294495350|ref|YP_003541843.1| - 6.3e-90 301.8 0.0 8.4e-90 301.4 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|294495350|ref|YP_003541843.1| - 0.003 17.4 0.0 0.0064 16.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PRONE PF03759.13 gi|294495350|ref|YP_003541843.1| - 0.1 11.4 0.0 0.27 10.0 0.0 1.6 2 0 0 2 2 2 0 PRONE (Plant-specific Rop nucleotide exchanger) UbiA PF01040.18 gi|294495351|ref|YP_003541844.1| - 1.2e-38 132.9 14.5 1.5e-38 132.6 14.5 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family Pyr_redox_3 PF13738.6 gi|294495352|ref|YP_003541845.1| - 4.9e-08 32.6 0.0 1.7e-07 30.8 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|294495352|ref|YP_003541845.1| - 5.4e-08 32.5 0.0 6.8e-06 25.6 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|294495352|ref|YP_003541845.1| - 2.6e-07 30.2 0.0 0.00011 21.6 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|294495352|ref|YP_003541845.1| - 1e-06 27.8 0.2 7.4e-05 21.6 0.0 2.3 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|294495352|ref|YP_003541845.1| - 3.5e-06 26.4 0.0 8.3e-06 25.1 0.0 1.6 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|294495352|ref|YP_003541845.1| - 2.8e-05 24.2 0.0 9.9e-05 22.5 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|294495352|ref|YP_003541845.1| - 4.5e-05 22.7 0.1 0.0004 19.5 0.1 2.0 1 1 0 1 1 1 1 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|294495352|ref|YP_003541845.1| - 6e-05 22.6 0.0 9.5e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|294495352|ref|YP_003541845.1| - 6e-05 22.4 0.0 0.0001 21.6 0.0 1.4 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|294495352|ref|YP_003541845.1| - 0.00016 21.4 0.0 0.055 13.1 0.0 2.4 1 1 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|294495352|ref|YP_003541845.1| - 0.028 13.5 0.0 0.049 12.7 0.0 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A Radical_SAM PF04055.21 gi|294495353|ref|YP_003541846.1| - 6.5e-18 65.7 0.0 1.1e-17 64.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|294495353|ref|YP_003541846.1| - 5.1e-08 33.3 0.3 1.3e-07 32.0 0.3 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|294495353|ref|YP_003541846.1| - 0.00012 22.3 0.0 0.00023 21.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|294495353|ref|YP_003541846.1| - 0.0073 16.4 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Syntaxin_2 PF14523.6 gi|294495354|ref|YP_003541847.1| - 7.4e-06 26.3 35.1 0.00015 22.1 8.7 3.4 3 0 0 3 3 3 3 Syntaxin-like protein YkyA PF10368.9 gi|294495354|ref|YP_003541847.1| - 0.00013 21.7 16.6 0.00013 21.7 16.6 3.1 1 1 2 3 3 3 1 Putative cell-wall binding lipoprotein Laminin_I PF06008.14 gi|294495354|ref|YP_003541847.1| - 0.16 11.6 33.3 0.1 12.3 14.0 2.1 1 1 0 2 2 2 0 Laminin Domain I DUF1771 PF08590.10 gi|294495354|ref|YP_003541847.1| - 0.21 12.0 24.5 0.086 13.2 5.9 4.3 2 2 2 5 5 5 0 Domain of unknown function (DUF1771) Golgin_A5 PF09787.9 gi|294495354|ref|YP_003541847.1| - 0.93 8.9 39.9 0.55 9.6 10.1 2.3 1 1 0 2 2 2 0 Golgin subfamily A member 5 KIF1B PF12423.8 gi|294495354|ref|YP_003541847.1| - 1.4 9.4 5.1 35 4.9 2.0 3.1 2 1 0 2 2 2 0 Kinesin protein 1B TMPIT PF07851.13 gi|294495354|ref|YP_003541847.1| - 1.7 7.8 36.0 0.33 10.1 10.9 3.3 1 1 4 5 5 5 0 TMPIT-like protein DUF1841 PF08897.11 gi|294495354|ref|YP_003541847.1| - 1.8 8.6 8.6 1.3 9.0 0.7 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF1841) Seryl_tRNA_N PF02403.22 gi|294495354|ref|YP_003541847.1| - 1.8 8.8 47.4 2.6 8.3 16.2 4.1 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain TPR_MLP1_2 PF07926.12 gi|294495354|ref|YP_003541847.1| - 2 8.5 44.1 5 7.2 15.2 4.0 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein TarH PF02203.15 gi|294495354|ref|YP_003541847.1| - 2.7 7.9 15.7 13 5.7 3.1 3.4 2 1 1 3 3 3 0 Tar ligand binding domain homologue Occludin_ELL PF07303.13 gi|294495354|ref|YP_003541847.1| - 2.7 8.8 30.7 1.9 9.3 2.3 4.0 1 1 1 3 3 2 0 Occludin homology domain T3SSipB PF16535.5 gi|294495354|ref|YP_003541847.1| - 3 8.3 26.7 3.5 8.1 6.0 3.1 1 1 2 3 3 3 0 Type III cell invasion protein SipB DUF4200 PF13863.6 gi|294495354|ref|YP_003541847.1| - 3.3 8.1 50.9 2.4 8.6 19.1 3.4 1 1 1 3 3 3 0 Domain of unknown function (DUF4200) Fib_alpha PF08702.10 gi|294495354|ref|YP_003541847.1| - 5.5 7.2 30.3 2.5 8.3 9.3 3.0 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family I_LWEQ PF01608.17 gi|294495354|ref|YP_003541847.1| - 6 7.1 27.7 14 5.9 8.3 3.3 1 1 2 3 3 3 0 I/LWEQ domain Pannexin_like PF12534.8 gi|294495354|ref|YP_003541847.1| - 6.6 5.7 21.0 4 6.4 5.1 2.3 2 0 0 2 2 2 0 Pannexin-like TM region of LRRC8 Spc7 PF08317.11 gi|294495354|ref|YP_003541847.1| - 6.6 5.5 42.3 3.3 6.5 18.9 2.4 1 1 1 2 2 2 0 Spc7 kinetochore protein Sec34 PF04136.15 gi|294495354|ref|YP_003541847.1| - 6.7 6.6 24.9 0.064 13.1 6.1 3.4 1 1 3 4 4 4 0 Sec34-like family MAD PF05557.13 gi|294495354|ref|YP_003541847.1| - 8 4.7 42.2 0.78 8.0 26.6 2.1 1 1 1 2 2 2 0 Mitotic checkpoint protein AAA_13 PF13166.6 gi|294495354|ref|YP_003541847.1| - 9.3 4.8 38.1 25 3.3 38.0 1.6 1 1 0 1 1 1 0 AAA domain HAD PF12710.7 gi|294495355|ref|YP_003541848.1| - 2.5e-18 67.2 0.0 3.2e-18 66.8 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|294495355|ref|YP_003541848.1| - 6.1e-16 59.3 0.1 1.3e-15 58.2 0.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|294495355|ref|YP_003541848.1| - 5.5e-11 42.7 0.2 4e-09 36.6 0.0 2.7 2 1 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|294495355|ref|YP_003541848.1| - 1.6e-09 38.1 0.7 3.6e-08 33.7 0.7 2.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|294495355|ref|YP_003541848.1| - 2.5e-08 33.6 0.1 3.9e-07 29.7 0.1 2.0 1 1 0 1 1 1 1 Putative Phosphatase S6PP PF05116.13 gi|294495355|ref|YP_003541848.1| - 0.085 12.4 0.1 2.1 7.8 0.0 2.1 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Acid_PPase PF12689.7 gi|294495355|ref|YP_003541848.1| - 0.1 12.4 0.1 0.57 10.0 0.1 2.0 1 1 0 1 1 1 0 Acid Phosphatase Hydrolase_like PF13242.6 gi|294495355|ref|YP_003541848.1| - 0.15 12.1 0.0 0.45 10.6 0.0 1.7 2 0 0 2 2 2 0 HAD-hyrolase-like DUF705 PF05152.12 gi|294495355|ref|YP_003541848.1| - 0.16 11.4 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF705) MTD PF01993.18 gi|294495356|ref|YP_003541849.1| - 3.1e-123 410.4 0.3 3.5e-123 410.3 0.3 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase DUF768 PF05589.11 gi|294495356|ref|YP_003541849.1| - 0.15 12.1 0.2 0.4 10.7 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF768) Baculo_11_kDa PF06143.11 gi|294495357|ref|YP_003541850.1| - 0.0088 15.6 1.0 0.0091 15.5 1.0 1.1 1 0 0 1 1 1 1 Baculovirus 11 kDa family OSTMP1 PF09777.9 gi|294495357|ref|YP_003541850.1| - 0.062 12.7 0.4 0.06 12.7 0.4 1.0 1 0 0 1 1 1 0 Osteopetrosis-associated transmembrane protein 1 precursor EphA2_TM PF14575.6 gi|294495357|ref|YP_003541850.1| - 0.23 12.3 0.6 0.24 12.3 0.6 1.1 1 0 0 1 1 1 0 Ephrin type-A receptor 2 transmembrane domain PAC2 PF09754.9 gi|294495358|ref|YP_003541851.1| - 5.8e-53 180.1 0.4 6.8e-53 179.8 0.4 1.0 1 0 0 1 1 1 1 PAC2 family DHR10 PF18595.1 gi|294495358|ref|YP_003541851.1| - 0.047 13.7 0.2 0.095 12.8 0.2 1.4 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain DUF473 PF04322.12 gi|294495359|ref|YP_003541852.1| - 8.1e-46 154.7 2.8 9.1e-46 154.5 2.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) MerR_2 PF13591.6 gi|294495359|ref|YP_003541852.1| - 0.016 15.0 0.0 0.057 13.3 0.0 1.9 1 1 1 2 2 2 0 MerR HTH family regulatory protein PRE_C2HC PF07530.11 gi|294495359|ref|YP_003541852.1| - 0.11 12.6 0.5 7.6 6.7 0.0 2.1 2 0 0 2 2 2 0 Associated with zinc fingers DUF169 PF02596.15 gi|294495360|ref|YP_003541853.1| - 7.7e-25 88.0 0.1 9.1e-25 87.8 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 PADR1 PF08063.12 gi|294495360|ref|YP_003541853.1| - 0.11 12.3 0.8 0.26 11.1 0.1 2.0 3 0 0 3 3 3 0 PADR1 (NUC008) domain Endonuclease_5 PF04493.14 gi|294495361|ref|YP_003541854.1| - 2.1e-47 161.4 0.0 2.3e-47 161.2 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.16 gi|294495361|ref|YP_003541854.1| - 0.0086 15.5 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF99 tRNA-synt_2d PF01409.20 gi|294495362|ref|YP_003541855.1| - 1.7e-54 184.9 0.0 1.4e-49 168.8 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SepRS_C PF18006.1 gi|294495362|ref|YP_003541855.1| - 4.8e-13 49.0 0.1 1e-12 47.9 0.1 1.6 1 0 0 1 1 1 1 O-phosphoseryl-tRNA synthetase C-terminal domain tRNA_synthFbeta PF17759.1 gi|294495362|ref|YP_003541855.1| - 1.4e-10 41.0 0.0 2.8e-07 30.2 0.0 2.2 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain Translin PF01997.16 gi|294495363|ref|YP_003541856.1| - 4.1e-06 26.9 0.4 1.2e-05 25.4 0.3 1.8 1 1 0 1 1 1 1 Translin family UPF0147 PF03685.13 gi|294495364|ref|YP_003541857.1| - 3.1e-36 123.3 2.2 3.5e-36 123.1 2.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|294495364|ref|YP_003541857.1| - 0.023 15.0 0.1 0.31 11.3 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Auto_anti-p27 PF06677.12 gi|294495365|ref|YP_003541858.1| - 3.1e-13 49.6 1.4 5.1e-13 49.0 1.4 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|294495365|ref|YP_003541858.1| - 0.022 14.8 0.7 0.035 14.1 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon SURNod19 PF07712.12 gi|294495365|ref|YP_003541858.1| - 0.062 12.0 0.1 0.088 11.5 0.0 1.3 1 1 0 1 1 1 0 Stress up-regulated Nod 19 ERCC4 PF02732.15 gi|294495366|ref|YP_003541859.1| - 2.6e-24 86.2 0.2 6.6e-24 84.9 0.0 1.8 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.31 gi|294495366|ref|YP_003541859.1| - 3e-24 85.5 0.0 8.6e-22 77.6 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|294495366|ref|YP_003541859.1| - 1e-17 64.4 0.0 3.4e-17 62.8 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|294495366|ref|YP_003541859.1| - 1.5e-15 57.6 0.1 5.9e-15 55.7 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|294495366|ref|YP_003541859.1| - 2.2e-11 44.2 0.0 2.1e-10 41.1 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|294495366|ref|YP_003541859.1| - 4.8e-11 42.6 0.1 3.4e-10 39.9 0.0 2.4 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH PF00633.23 gi|294495366|ref|YP_003541859.1| - 0.0012 18.6 0.1 0.0053 16.6 0.1 2.3 1 0 0 1 1 1 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|294495366|ref|YP_003541859.1| - 0.0034 18.0 0.0 0.035 14.7 0.0 2.7 1 1 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold DUF1870 PF08965.10 gi|294495366|ref|YP_003541859.1| - 0.018 15.1 0.0 0.062 13.3 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1870) SecA_DEAD PF07517.14 gi|294495366|ref|YP_003541859.1| - 0.065 12.5 0.3 0.11 11.8 0.0 1.6 2 0 0 2 2 2 0 SecA DEAD-like domain HHH_8 PF14716.6 gi|294495366|ref|YP_003541859.1| - 0.083 13.3 0.1 0.45 10.9 0.1 2.4 2 1 0 2 2 2 0 Helix-hairpin-helix domain Organ_specific PF10950.8 gi|294495366|ref|YP_003541859.1| - 0.11 13.3 1.0 0.88 10.3 0.1 2.4 2 0 0 2 2 2 0 Organ specific protein HGTP_anticodon PF03129.20 gi|294495367|ref|YP_003541860.1| - 4.7e-23 81.2 0.7 5e-22 77.9 0.0 2.8 3 0 0 3 3 3 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|294495367|ref|YP_003541860.1| - 4.3e-11 43.1 0.1 1e-10 41.8 0.1 1.7 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|294495367|ref|YP_003541860.1| - 0.0043 16.2 1.5 0.22 10.5 0.3 2.5 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) DeoC PF01791.9 gi|294495368|ref|YP_003541861.1| - 8e-62 208.9 0.0 9.3e-62 208.7 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.24 gi|294495368|ref|YP_003541861.1| - 0.00018 21.2 0.2 0.00046 19.8 0.1 1.6 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.17 gi|294495368|ref|YP_003541861.1| - 0.006 15.9 0.0 0.71 9.2 0.0 2.3 1 1 1 2 2 2 2 Thiamine monophosphate synthase dUTPase PF00692.19 gi|294495369|ref|YP_003541862.1| - 5.4e-11 42.3 0.0 7.7e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|294495369|ref|YP_003541862.1| - 0.064 12.0 0.0 0.1 11.3 0.0 1.6 1 1 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DUF420 PF04238.12 gi|294495370|ref|YP_003541863.1| - 4.3e-06 27.0 15.9 5.2e-06 26.8 15.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF420) Nucleos_tra2_N PF01773.20 gi|294495370|ref|YP_003541863.1| - 0.051 14.2 2.6 0.051 14.2 2.6 2.3 1 1 2 3 3 3 0 Na+ dependent nucleoside transporter N-terminus Prok-JAB PF14464.6 gi|294495371|ref|YP_003541864.1| - 2.6e-19 69.2 0.0 3e-19 68.9 0.0 1.0 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 gi|294495371|ref|YP_003541864.1| - 1.7e-06 28.0 0.0 2.2e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease DUF4329 PF14220.6 gi|294495371|ref|YP_003541864.1| - 0.0045 17.0 0.0 0.0056 16.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4329) Toxin-JAB1 PF15659.6 gi|294495371|ref|YP_003541864.1| - 0.067 13.5 0.0 0.096 13.0 0.0 1.3 1 0 0 1 1 1 0 JAB-like toxin 1 RadC PF04002.15 gi|294495371|ref|YP_003541864.1| - 0.13 12.3 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 RadC-like JAB domain Radical_SAM PF04055.21 gi|294495372|ref|YP_003541865.1| - 5.9e-11 43.0 0.0 1.2e-10 42.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily TusA PF01206.17 gi|294495373|ref|YP_003541866.1| - 1.2e-19 69.9 0.0 1.4e-19 69.7 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|294495373|ref|YP_003541866.1| - 0.026 14.4 0.0 0.061 13.2 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) DUF169 PF02596.15 gi|294495374|ref|YP_003541867.1| - 2.3e-33 115.9 0.1 1.3e-23 84.0 0.1 2.2 1 1 1 2 2 2 2 Uncharacterised ArCR, COG2043 SepSecS PF05889.13 gi|294495375|ref|YP_003541868.1| - 1e-19 70.6 0.0 1.9e-19 69.6 0.0 1.4 1 1 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|294495375|ref|YP_003541868.1| - 2.9e-17 62.7 0.0 4.2e-17 62.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|294495375|ref|YP_003541868.1| - 1.6e-08 34.1 0.0 1.1e-07 31.4 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|294495375|ref|YP_003541868.1| - 7.2e-06 25.5 0.0 9.6e-05 21.8 0.0 2.1 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|294495375|ref|YP_003541868.1| - 0.00016 21.0 0.0 0.00033 20.0 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase DUF1484 PF07363.11 gi|294495377|ref|YP_003541870.1| - 0.0048 17.9 0.0 0.0059 17.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1484) Synaptobrevin PF00957.21 gi|294495377|ref|YP_003541870.1| - 0.54 10.1 4.7 0.92 9.3 1.7 2.0 1 1 1 2 2 2 0 Synaptobrevin PHO4 PF01384.20 gi|294495378|ref|YP_003541871.1| - 1.2e-51 175.7 35.0 3.1e-51 174.4 35.0 1.6 1 1 0 1 1 1 1 Phosphate transporter family Colicin_V PF02674.16 gi|294495378|ref|YP_003541871.1| - 3.8e-06 26.9 2.8 3.8e-06 26.9 2.8 3.4 1 1 2 3 3 3 1 Colicin V production protein Pilin_N PF07790.11 gi|294495378|ref|YP_003541871.1| - 0.5 11.3 10.8 8.2 7.4 0.8 3.0 1 1 1 2 2 2 0 Archaeal Type IV pilin, N-terminal FUSC-like PF12805.7 gi|294495378|ref|YP_003541871.1| - 1.6 7.7 4.7 0.35 9.9 1.2 1.7 1 1 0 1 1 1 0 FUSC-like inner membrane protein yccS NIR_SIR PF01077.22 gi|294495379|ref|YP_003541872.1| - 1.1e-32 112.7 0.0 1.5e-32 112.3 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|294495379|ref|YP_003541872.1| - 2.4e-20 72.1 0.0 4.4e-20 71.3 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|294495379|ref|YP_003541872.1| - 8.3e-16 57.1 11.5 6.7e-08 32.0 3.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|294495379|ref|YP_003541872.1| - 3.6e-15 55.3 9.5 7.6e-08 32.1 0.7 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294495379|ref|YP_003541872.1| - 3.5e-10 40.3 24.2 3.5e-08 33.9 10.9 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294495379|ref|YP_003541872.1| - 1e-08 35.1 20.5 5.9e-06 26.3 13.1 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|294495379|ref|YP_003541872.1| - 5.4e-08 32.9 23.5 1.2e-06 28.6 10.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294495379|ref|YP_003541872.1| - 1.2e-07 31.3 12.4 1.2e-05 25.1 1.9 3.1 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|294495379|ref|YP_003541872.1| - 2.7e-07 31.4 8.6 0.0036 18.2 1.1 3.2 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|294495379|ref|YP_003541872.1| - 3.8e-07 30.2 24.3 2.8e-06 27.4 11.0 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|294495379|ref|YP_003541872.1| - 0.0062 17.0 16.9 0.057 13.9 3.4 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|294495379|ref|YP_003541872.1| - 0.011 16.6 5.7 0.81 10.6 0.5 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294495379|ref|YP_003541872.1| - 0.022 15.2 3.9 0.022 15.2 3.9 3.3 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294495379|ref|YP_003541872.1| - 0.027 15.0 15.6 1.3 9.6 5.7 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|294495379|ref|YP_003541872.1| - 0.1 13.6 4.0 0.1 13.6 4.0 3.5 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|294495379|ref|YP_003541872.1| - 0.41 10.9 9.9 0.39 10.9 0.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|294495379|ref|YP_003541872.1| - 0.72 10.4 16.8 1.8 9.2 3.5 3.8 4 0 0 4 4 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|294495379|ref|YP_003541872.1| - 1.7 9.4 19.0 0.91 10.3 0.1 4.7 4 2 1 5 5 5 0 4Fe-4S single cluster domain PAPS_reduct PF01507.19 gi|294495380|ref|YP_003541873.1| - 4.1e-49 167.0 0.0 5.1e-49 166.7 0.0 1.1 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP-sulfurylase PF01747.17 gi|294495381|ref|YP_003541874.1| - 1.3e-85 286.2 0.0 1.7e-85 285.8 0.0 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|294495381|ref|YP_003541874.1| - 5.9e-51 172.3 0.0 8e-51 171.8 0.0 1.2 1 0 0 1 1 1 1 PUA-like domain zn-ribbon_14 PF16503.5 gi|294495381|ref|YP_003541874.1| - 0.39 10.2 2.0 0.65 9.5 2.0 1.3 1 0 0 1 1 1 0 Zinc-ribbon NMT1_2 PF13379.6 gi|294495382|ref|YP_003541875.1| - 1.2e-18 67.7 0.0 1.5e-18 67.4 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|294495382|ref|YP_003541875.1| - 5.9e-11 42.7 0.0 1.4e-10 41.5 0.0 1.5 1 1 0 1 1 1 1 NMT1/THI5 like DUF3834 PF12916.7 gi|294495382|ref|YP_003541875.1| - 3.1e-05 23.3 0.0 0.0003 20.1 0.0 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF3834) OpuAC PF04069.12 gi|294495382|ref|YP_003541875.1| - 0.007 16.0 0.0 0.032 13.8 0.0 1.9 1 1 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system ThiS PF02597.20 gi|294495383|ref|YP_003541876.1| - 5.3e-17 62.2 0.0 5.8e-17 62.1 0.0 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|294495383|ref|YP_003541876.1| - 0.0011 19.3 0.0 0.0012 19.1 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) PALP PF00291.25 gi|294495384|ref|YP_003541877.1| - 1.9e-66 224.5 0.1 2.3e-66 224.2 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ThiF PF00899.21 gi|294495385|ref|YP_003541878.1| - 4.1e-66 222.8 0.0 5.2e-66 222.5 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|294495385|ref|YP_003541878.1| - 0.00073 19.8 0.1 0.002 18.4 0.1 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain PglD_N PF17836.1 gi|294495385|ref|YP_003541878.1| - 0.0023 18.5 0.3 0.0073 16.9 0.3 1.9 1 0 0 1 1 1 1 PglD N-terminal domain Shikimate_DH PF01488.20 gi|294495385|ref|YP_003541878.1| - 0.0026 17.8 0.1 0.011 15.8 0.0 1.9 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase Rad50_zn_hook PF04423.14 gi|294495385|ref|YP_003541878.1| - 0.025 14.4 0.0 0.065 13.1 0.0 1.7 1 0 0 1 1 1 0 Rad50 zinc hook motif UDPG_MGDP_dh_N PF03721.14 gi|294495385|ref|YP_003541878.1| - 0.2 11.2 2.3 0.42 10.2 1.4 1.8 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TusA PF01206.17 gi|294495386|ref|YP_003541879.1| - 3.8e-21 74.7 0.0 4.3e-21 74.5 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|294495386|ref|YP_003541879.1| - 0.14 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) Prefoldin_2 PF01920.20 gi|294495387|ref|YP_003541880.1| - 2.6e-23 82.0 19.5 2.9e-23 81.8 19.5 1.0 1 0 0 1 1 1 1 Prefoldin subunit TFA2_Winged_2 PF18121.1 gi|294495387|ref|YP_003541880.1| - 0.021 14.5 1.5 1.3 8.8 0.1 2.4 2 1 0 2 2 2 0 TFA2 Winged helix domain 2 PI_PP_I PF18363.1 gi|294495387|ref|YP_003541880.1| - 0.023 14.9 2.1 0.45 10.7 0.1 2.1 2 0 0 2 2 2 0 Phosphoinositide phosphatase insertion domain Med4 PF10018.9 gi|294495387|ref|YP_003541880.1| - 0.023 14.4 1.6 0.023 14.4 1.6 2.0 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 UPF0147 PF03685.13 gi|294495387|ref|YP_003541880.1| - 0.033 14.2 0.5 0.069 13.2 0.2 1.8 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0147) Swi5 PF07061.11 gi|294495387|ref|YP_003541880.1| - 0.052 13.6 11.8 0.072 13.2 6.8 2.5 2 1 0 2 2 2 0 Swi5 Sec34 PF04136.15 gi|294495387|ref|YP_003541880.1| - 0.063 13.1 7.9 0.93 9.4 0.7 2.2 2 0 0 2 2 2 0 Sec34-like family Seryl_tRNA_N PF02403.22 gi|294495387|ref|YP_003541880.1| - 0.064 13.5 9.6 1.5 9.1 2.5 2.3 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain CENP-F_leu_zip PF10473.9 gi|294495387|ref|YP_003541880.1| - 0.082 12.9 16.8 0.41 10.7 3.8 2.0 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 GAS PF13851.6 gi|294495387|ref|YP_003541880.1| - 0.092 12.1 19.0 1.8 7.9 17.4 1.9 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding BLOC1_2 PF10046.9 gi|294495387|ref|YP_003541880.1| - 0.13 12.6 9.9 2.3 8.6 3.6 2.3 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 MCC-bdg_PDZ PF10506.9 gi|294495387|ref|YP_003541880.1| - 0.16 12.0 8.8 0.23 11.5 1.0 2.3 2 0 0 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome POTRA_TamA_1 PF17243.2 gi|294495387|ref|YP_003541880.1| - 0.19 11.9 5.4 0.27 11.3 0.3 2.3 2 0 0 2 2 2 0 POTRA domain TamA domain 1 LMBR1 PF04791.16 gi|294495387|ref|YP_003541880.1| - 0.3 9.9 5.3 0.35 9.7 5.3 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF2408 PF10303.9 gi|294495387|ref|YP_003541880.1| - 0.35 11.4 7.6 0.46 11.0 7.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) SRP54 PF00448.22 gi|294495387|ref|YP_003541880.1| - 0.42 10.2 5.5 0.51 9.9 5.5 1.1 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF948 PF06103.11 gi|294495387|ref|YP_003541880.1| - 0.43 10.9 9.3 4.6 7.6 3.2 2.6 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Lipoprotein_20 PF13942.6 gi|294495387|ref|YP_003541880.1| - 0.45 10.4 11.7 2 8.3 2.6 2.1 2 0 0 2 2 2 0 YfhG lipoprotein CinA_KH PF18146.1 gi|294495387|ref|YP_003541880.1| - 0.48 10.6 3.8 0.93 9.7 0.3 2.4 1 1 1 2 2 2 0 Damage-inducible protein CinA KH domain DHR10 PF18595.1 gi|294495387|ref|YP_003541880.1| - 0.48 10.5 18.7 0.56 10.3 4.8 2.1 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain ZapB PF06005.12 gi|294495387|ref|YP_003541880.1| - 0.49 10.9 18.5 0.55 10.7 3.9 2.2 2 0 0 2 2 2 0 Cell division protein ZapB DUF3450 PF11932.8 gi|294495387|ref|YP_003541880.1| - 0.6 9.4 23.0 1.8 7.8 5.2 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF3450) Prefoldin PF02996.17 gi|294495387|ref|YP_003541880.1| - 0.64 9.9 15.7 1.7 8.6 2.8 2.4 1 1 1 2 2 2 0 Prefoldin subunit Nup54 PF13874.6 gi|294495387|ref|YP_003541880.1| - 0.65 10.1 15.5 11 6.1 15.5 2.3 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Leu_zip PF15294.6 gi|294495387|ref|YP_003541880.1| - 0.69 9.4 14.1 0.24 10.9 2.7 2.0 1 1 1 2 2 2 0 Leucine zipper Phage_GP20 PF06810.11 gi|294495387|ref|YP_003541880.1| - 0.93 9.3 13.4 2.8 7.8 3.4 2.2 1 1 1 2 2 2 0 Phage minor structural protein GP20 Laminin_II PF06009.12 gi|294495387|ref|YP_003541880.1| - 1.2 9.1 15.3 14 5.7 15.3 1.9 1 1 0 1 1 1 0 Laminin Domain II HemX PF04375.14 gi|294495387|ref|YP_003541880.1| - 1.3 8.3 23.3 0.63 9.3 11.1 2.0 1 1 0 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase DegS PF05384.11 gi|294495387|ref|YP_003541880.1| - 1.4 8.4 17.0 0.37 10.3 5.1 2.1 1 1 1 2 2 2 0 Sensor protein DegS DivIC PF04977.15 gi|294495387|ref|YP_003541880.1| - 1.5 8.6 19.9 2.2 8.1 7.4 2.8 2 1 1 3 3 3 0 Septum formation initiator UPF0242 PF06785.11 gi|294495387|ref|YP_003541880.1| - 1.6 8.8 21.8 10 6.1 21.8 1.9 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF4407 PF14362.6 gi|294495387|ref|YP_003541880.1| - 1.8 7.8 11.3 1.9 7.8 11.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) FlaC_arch PF05377.11 gi|294495387|ref|YP_003541880.1| - 2 8.9 12.0 0.38 11.2 1.5 2.6 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) TSNAXIP1_N PF15739.5 gi|294495387|ref|YP_003541880.1| - 2.1 8.8 14.5 4.1 7.8 1.9 2.1 2 0 0 2 2 2 0 Translin-associated factor X-interacting N-terminus Spc7 PF08317.11 gi|294495387|ref|YP_003541880.1| - 2.1 7.1 17.6 4.5 6.1 17.6 1.5 1 1 0 1 1 1 0 Spc7 kinetochore protein Uso1_p115_C PF04871.13 gi|294495387|ref|YP_003541880.1| - 2.2 8.7 16.4 36 4.7 16.4 2.1 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region WXG100 PF06013.12 gi|294495387|ref|YP_003541880.1| - 2.2 8.6 13.8 4 7.8 6.9 2.5 2 1 0 2 2 2 0 Proteins of 100 residues with WXG DUF2968 PF11180.8 gi|294495387|ref|YP_003541880.1| - 2.9 7.5 22.0 2.7 7.6 4.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) DUF4795 PF16043.5 gi|294495387|ref|YP_003541880.1| - 3.1 7.4 15.7 1.2e+02 2.2 15.8 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) DUF3552 PF12072.8 gi|294495387|ref|YP_003541880.1| - 3.3 7.1 20.6 2.4 7.5 5.8 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) KfrA_N PF11740.8 gi|294495387|ref|YP_003541880.1| - 4.1 8.1 13.4 1 10.0 6.1 2.2 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term YscO PF07321.12 gi|294495387|ref|YP_003541880.1| - 4.5 7.2 19.1 29 4.6 19.1 1.8 1 1 0 1 1 1 0 Type III secretion protein YscO Herpes_UL6 PF01763.16 gi|294495387|ref|YP_003541880.1| - 5.4 5.4 14.0 2.1 6.8 2.1 2.0 1 1 1 2 2 2 0 Herpesvirus UL6 like DUF1664 PF07889.12 gi|294495387|ref|YP_003541880.1| - 6.2 6.9 11.9 7.4 6.6 1.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) FapA PF03961.13 gi|294495387|ref|YP_003541880.1| - 6.5 5.2 10.7 10 4.6 10.8 1.3 1 1 0 1 1 1 0 Flagellar Assembly Protein A Occludin_ELL PF07303.13 gi|294495387|ref|YP_003541880.1| - 6.5 7.5 10.4 11 6.8 0.2 2.7 1 1 1 2 2 2 0 Occludin homology domain ABC_tran_CTD PF16326.5 gi|294495387|ref|YP_003541880.1| - 6.7 7.0 16.0 11 6.4 1.8 2.6 1 1 1 2 2 2 0 ABC transporter C-terminal domain LPP PF04728.13 gi|294495387|ref|YP_003541880.1| - 7 7.1 10.7 12 6.4 0.2 2.8 2 1 1 3 3 3 0 Lipoprotein leucine-zipper V_ATPase_I PF01496.19 gi|294495387|ref|YP_003541880.1| - 8.9 4.1 10.8 13 3.5 10.8 1.3 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DHHA1 PF02272.19 gi|294495388|ref|YP_003541881.1| - 9.7e-12 45.5 1.6 1.7e-11 44.7 1.6 1.4 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|294495388|ref|YP_003541881.1| - 1.6e-09 37.9 0.6 3.1e-09 37.0 0.6 1.5 1 0 0 1 1 1 1 DHH family AMP-binding_C_2 PF14535.6 gi|294495389|ref|YP_003541882.1| - 1.5e-30 105.4 0.3 3.4e-30 104.2 0.3 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|294495389|ref|YP_003541882.1| - 1.3e-15 57.0 0.0 1.3e-15 57.0 0.0 1.4 2 0 0 2 2 2 1 AMP-binding enzyme LuxE PF04443.12 gi|294495389|ref|YP_003541882.1| - 0.058 12.4 0.0 0.36 9.8 0.0 2.2 2 1 0 2 2 2 0 Acyl-protein synthetase, LuxE ACT PF01842.25 gi|294495390|ref|YP_003541883.1| - 4.8e-15 55.0 0.2 1.2e-07 31.4 0.0 2.3 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|294495390|ref|YP_003541883.1| - 2.2e-08 34.6 0.1 0.001 19.6 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|294495390|ref|YP_003541883.1| - 2.7e-06 27.1 0.1 0.003 17.3 0.1 2.7 2 1 0 2 2 2 2 ACT domain ACT_6 PF13740.6 gi|294495390|ref|YP_003541883.1| - 0.077 13.0 0.0 6.4 6.8 0.0 2.2 1 1 1 2 2 2 0 ACT domain DUF2103 PF09876.9 gi|294495391|ref|YP_003541884.1| - 2e-39 133.5 1.5 2.3e-39 133.3 1.5 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) DUF1464 PF07318.12 gi|294495392|ref|YP_003541885.1| - 9.7e-08 31.5 0.7 2e-07 30.5 0.7 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1464) Pox_M2 PF04887.12 gi|294495392|ref|YP_003541885.1| - 0.13 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Poxvirus M2 protein CN_hydrolase PF00795.22 gi|294495393|ref|YP_003541886.1| - 2.8e-48 164.5 0.0 3.3e-48 164.3 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase TPP_enzyme_C PF02775.21 gi|294495394|ref|YP_003541887.1| - 6.5e-10 39.0 0.1 1.5e-09 37.9 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|294495394|ref|YP_003541887.1| - 0.00031 20.6 0.0 0.00055 19.8 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transket_pyr PF02779.24 gi|294495394|ref|YP_003541887.1| - 0.002 17.9 0.0 0.0033 17.1 0.0 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain DUF1743 PF08489.11 gi|294495395|ref|YP_003541888.1| - 5.3e-10 39.4 0.0 2.2e-06 27.7 0.0 3.6 3 1 0 3 3 3 1 Domain of unknown function (DUF1743) FPP PF05911.11 gi|294495395|ref|YP_003541888.1| - 0.051 11.8 0.0 0.06 11.5 0.0 1.0 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil RadC PF04002.15 gi|294495396|ref|YP_003541889.1| - 7.7e-45 151.8 0.0 1.2e-44 151.2 0.0 1.3 1 0 0 1 1 1 1 RadC-like JAB domain HHH_2 PF12826.7 gi|294495396|ref|YP_003541889.1| - 0.0026 17.8 0.0 0.005 16.9 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif Prok-JAB PF14464.6 gi|294495396|ref|YP_003541889.1| - 0.02 14.7 0.0 0.031 14.1 0.0 1.4 1 1 0 1 1 1 0 Prokaryotic homologs of the JAB domain HHH_5 PF14520.6 gi|294495396|ref|YP_003541889.1| - 0.03 14.9 0.0 0.061 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain HhH-GPD PF00730.25 gi|294495396|ref|YP_003541889.1| - 0.034 14.6 0.0 0.04 14.4 0.0 1.3 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|294495396|ref|YP_003541889.1| - 0.044 13.7 0.1 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif MoaE PF02391.17 gi|294495397|ref|YP_003541890.1| - 6.7e-25 87.6 0.1 1.2e-24 86.8 0.1 1.4 1 0 0 1 1 1 1 MoaE protein MobB PF03205.14 gi|294495397|ref|YP_003541890.1| - 2.1e-16 60.0 0.2 5.1e-16 58.8 0.2 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.23 gi|294495397|ref|YP_003541890.1| - 0.00026 21.0 0.0 0.0014 18.7 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.23 gi|294495397|ref|YP_003541890.1| - 0.007 16.4 0.1 0.023 14.8 0.0 1.9 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_14 PF13173.6 gi|294495397|ref|YP_003541890.1| - 0.033 14.2 0.0 0.091 12.8 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|294495397|ref|YP_003541890.1| - 0.053 13.1 0.3 0.72 9.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain Lar_N PF09861.9 gi|294495398|ref|YP_003541891.1| - 1.4e-70 236.6 0.0 2.4e-70 235.9 0.0 1.4 1 0 0 1 1 1 1 Lactate racemase N-terminal domain DUF362 PF04015.12 gi|294495398|ref|YP_003541891.1| - 0.0018 18.5 0.0 0.003 17.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF362) DUF2117 PF09890.9 gi|294495399|ref|YP_003541892.1| - 2.1e-74 249.6 0.1 3.3e-74 248.9 0.1 1.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2117) NAD_kinase PF01513.21 gi|294495399|ref|YP_003541892.1| - 0.01 15.1 0.0 0.017 14.4 0.0 1.2 1 0 0 1 1 1 0 ATP-NAD kinase DRTGG PF07085.12 gi|294495399|ref|YP_003541892.1| - 0.048 13.5 0.2 23 4.9 0.3 3.4 2 2 1 3 3 3 0 DRTGG domain TPP_enzyme_M PF00205.22 gi|294495399|ref|YP_003541892.1| - 0.093 12.5 0.0 2.3 8.0 0.0 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain Lyase_1 PF00206.20 gi|294495400|ref|YP_003541893.1| - 5e-100 334.9 0.0 6.1e-100 334.6 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|294495400|ref|YP_003541893.1| - 9.9e-17 61.1 0.0 2.5e-16 59.8 0.0 1.7 1 0 0 1 1 1 1 Fumarase C C-terminus FAD_binding_2 PF00890.24 gi|294495401|ref|YP_003541894.1| - 1e-115 387.2 0.0 1.3e-115 386.8 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|294495401|ref|YP_003541894.1| - 6.9e-41 139.2 0.6 1.1e-40 138.6 0.6 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|294495401|ref|YP_003541894.1| - 1.4e-10 41.3 0.5 4.1e-09 36.5 0.5 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|294495401|ref|YP_003541894.1| - 1.1e-08 34.7 0.4 4.3e-06 26.2 0.1 3.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|294495401|ref|YP_003541894.1| - 1.4e-08 33.9 0.3 0.00041 19.2 0.5 2.3 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.7 gi|294495401|ref|YP_003541894.1| - 7.5e-07 28.8 0.1 1.5e-05 24.6 0.5 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|294495401|ref|YP_003541894.1| - 1.4e-06 27.7 0.8 1.8e-05 24.0 0.8 2.2 1 1 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|294495401|ref|YP_003541894.1| - 0.00011 21.6 0.1 0.0076 15.5 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|294495401|ref|YP_003541894.1| - 0.00018 21.7 0.3 0.00068 19.8 0.1 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|294495401|ref|YP_003541894.1| - 0.0019 17.5 0.0 0.0031 16.8 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain DUF374 PF04028.13 gi|294495401|ref|YP_003541894.1| - 0.0046 16.5 0.0 1.9 8.1 0.0 2.7 2 0 0 2 2 2 1 Domain of unknown function (DUF374) Pyr_redox PF00070.27 gi|294495401|ref|YP_003541894.1| - 0.012 16.2 1.0 0.03 14.9 0.1 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|294495401|ref|YP_003541894.1| - 0.012 14.8 0.4 0.038 13.2 0.3 1.8 2 0 0 2 2 2 0 FAD binding domain Thi4 PF01946.17 gi|294495401|ref|YP_003541894.1| - 0.017 14.4 0.8 0.054 12.7 0.2 2.2 3 0 0 3 3 3 0 Thi4 family Lycopene_cycl PF05834.12 gi|294495401|ref|YP_003541894.1| - 0.18 10.8 0.2 0.29 10.2 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|294495401|ref|YP_003541894.1| - 0.18 12.2 0.0 0.37 11.3 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Fer2_3 PF13085.6 gi|294495402|ref|YP_003541895.1| - 1.7e-30 105.2 0.0 1.7e-30 105.2 0.0 1.5 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|294495402|ref|YP_003541895.1| - 1.5e-09 38.1 4.3 1.5e-09 38.1 4.3 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294495402|ref|YP_003541895.1| - 1.2e-06 28.5 4.5 1.2e-06 28.5 4.5 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|294495402|ref|YP_003541895.1| - 2.4e-05 24.8 3.1 2.4e-05 24.8 3.1 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer2 PF00111.27 gi|294495402|ref|YP_003541895.1| - 0.00039 20.3 4.3 0.00062 19.7 0.5 2.4 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_7 PF12838.7 gi|294495402|ref|YP_003541895.1| - 0.043 14.4 8.6 0.043 14.4 8.6 2.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294495402|ref|YP_003541895.1| - 0.66 10.2 15.1 0.33 11.1 9.7 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Cytochrome_C7 PF14522.6 gi|294495403|ref|YP_003541896.1| - 9.7e-12 44.7 33.3 0.0011 18.9 8.9 5.2 1 1 3 4 4 4 4 Cytochrome c7 and related cytochrome c Cytochrom_c3_2 PF14537.6 gi|294495403|ref|YP_003541896.1| - 2.1e-09 37.7 30.4 0.14 12.6 7.1 4.7 1 1 2 3 3 3 3 Cytochrome c3 Cytochrome_C554 PF13435.6 gi|294495403|ref|YP_003541896.1| - 1.3e-07 32.4 36.5 6.9e-06 26.9 8.5 5.8 2 2 3 5 5 5 3 Cytochrome c554 and c-prime Paired_CXXCH_1 PF09699.10 gi|294495403|ref|YP_003541896.1| - 1e-05 25.2 46.5 0.025 14.3 2.9 6.7 4 2 3 7 7 7 4 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_NNT PF03264.14 gi|294495403|ref|YP_003541896.1| - 0.0004 20.1 31.3 0.055 13.2 0.4 5.3 2 2 2 4 4 4 4 NapC/NirT cytochrome c family, N-terminal region PGF-CTERM PF18204.1 gi|294495403|ref|YP_003541896.1| - 0.0035 17.2 0.7 0.007 16.3 0.7 1.5 1 0 0 1 1 1 1 PGF-CTERM motif Cytochrom_CIII PF02085.16 gi|294495403|ref|YP_003541896.1| - 0.013 15.8 36.3 0.16 12.4 4.8 4.8 2 2 1 3 3 3 0 Class III cytochrome C family Gin PF10764.9 gi|294495403|ref|YP_003541896.1| - 0.2 11.6 0.1 0.2 11.6 0.1 3.0 3 0 0 3 3 3 0 Inhibitor of sigma-G Gin DDE_Tnp_IS1 PF03400.13 gi|294495404|ref|YP_003541897.1| - 1.3e-13 51.4 0.1 2.3e-13 50.6 0.1 1.3 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.6 gi|294495404|ref|YP_003541897.1| - 1.8e-07 30.7 0.2 5.1e-07 29.3 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 gi|294495404|ref|YP_003541897.1| - 2.1e-07 30.7 0.0 4.3e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|294495404|ref|YP_003541897.1| - 3.6e-05 23.8 0.0 7.1e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|294495404|ref|YP_003541897.1| - 0.0014 18.6 0.1 0.0042 17.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_38 PF13936.6 gi|294495404|ref|YP_003541897.1| - 0.0022 17.7 0.0 0.0042 16.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.13 gi|294495404|ref|YP_003541897.1| - 0.0029 17.3 5.5 0.0054 16.4 5.5 1.5 1 0 0 1 1 1 1 InsA N-terminal domain Zn_Tnp_IS1595 PF12760.7 gi|294495404|ref|YP_003541897.1| - 0.0058 16.6 4.1 0.0058 16.6 4.1 1.8 2 0 0 2 2 2 1 Transposase zinc-ribbon domain HTH_Tnp_1 PF01527.20 gi|294495404|ref|YP_003541897.1| - 0.0094 16.2 0.0 0.025 14.9 0.0 1.7 1 0 0 1 1 1 1 Transposase DUF2387 PF09526.10 gi|294495404|ref|YP_003541897.1| - 0.018 15.2 0.6 0.047 13.8 0.6 1.7 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Sigma70_r4_2 PF08281.12 gi|294495404|ref|YP_003541897.1| - 0.02 14.6 0.0 0.038 13.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Lar_restr_allev PF14354.6 gi|294495404|ref|YP_003541897.1| - 0.024 15.0 0.6 0.047 14.1 0.6 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar HTH_50 PF18024.1 gi|294495404|ref|YP_003541897.1| - 0.026 14.1 0.0 0.054 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TnsD PF15978.5 gi|294495404|ref|YP_003541897.1| - 0.075 12.0 0.2 0.12 11.3 0.2 1.5 1 1 0 1 1 1 0 Tn7-like transposition protein D Nudix_N_2 PF14803.6 gi|294495404|ref|YP_003541897.1| - 0.075 13.0 2.7 0.14 12.1 2.7 1.4 1 0 0 1 1 1 0 Nudix N-terminal zf-Mss51 PF13824.6 gi|294495404|ref|YP_003541897.1| - 0.079 13.1 2.1 0.13 12.4 1.3 1.8 2 0 0 2 2 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|294495404|ref|YP_003541897.1| - 0.13 12.4 2.5 1.9 8.7 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-TFIIB PF13453.6 gi|294495404|ref|YP_003541897.1| - 0.54 9.6 3.0 1.5 8.2 3.0 1.8 1 0 0 1 1 1 0 Transcription factor zinc-finger OrfB_Zn_ribbon PF07282.11 gi|294495404|ref|YP_003541897.1| - 2.9 7.9 8.3 1.7 8.6 2.9 2.6 3 0 0 3 3 3 0 Putative transposase DNA-binding domain DUF1638 PF07796.11 gi|294495405|ref|YP_003541898.1| - 3e-34 118.4 0.0 4.4e-34 117.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) B12-binding PF02310.19 gi|294495406|ref|YP_003541899.1| - 8.8e-20 71.0 0.2 1.4e-19 70.3 0.2 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|294495406|ref|YP_003541899.1| - 0.011 16.2 0.0 0.026 15.0 0.0 1.6 1 0 0 1 1 1 0 B12 binding domain MgtE PF01769.16 gi|294495407|ref|YP_003541900.1| - 6.8e-20 71.7 10.7 6.8e-20 71.7 10.7 1.5 2 0 0 2 2 2 1 Divalent cation transporter MgtE PF01769.16 gi|294495408|ref|YP_003541901.1| - 1.5e-20 73.8 12.6 1.5e-20 73.8 12.6 1.6 2 0 0 2 2 2 1 Divalent cation transporter TrkA_C PF02080.21 gi|294495409|ref|YP_003541902.1| - 6.8e-22 77.1 0.1 1.3e-10 40.9 0.0 2.5 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|294495409|ref|YP_003541902.1| - 2e-18 66.6 17.2 5.3e-11 42.8 7.3 2.5 2 0 0 2 2 2 2 PhoU domain Sua5_yciO_yrdC PF01300.18 gi|294495411|ref|YP_003541904.1| - 1.1e-58 197.6 0.1 1.8e-58 197.0 0.1 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|294495411|ref|YP_003541904.1| - 7e-31 107.6 0.0 1.3e-30 106.7 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding PhaG_MnhG_YufB PF03334.14 gi|294495412|ref|YP_003541905.1| - 1.2e-23 83.1 7.6 1.5e-23 82.8 7.6 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.13 gi|294495413|ref|YP_003541906.1| - 1.8e-19 69.8 13.9 1.6e-18 66.8 8.2 2.1 2 0 0 2 2 2 2 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2149 PF09919.9 gi|294495413|ref|YP_003541906.1| - 2 8.7 7.4 2.3 8.5 1.9 2.3 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2149) Deltameth_res PF16020.5 gi|294495413|ref|YP_003541906.1| - 8.2 6.4 6.5 1.2 9.1 1.4 2.2 2 1 1 3 3 3 0 Deltamethrin resistance Chordopox_L2 PF05803.12 gi|294495413|ref|YP_003541906.1| - 8.9 6.2 9.5 4.7 7.1 3.2 2.3 2 1 0 2 2 2 0 Chordopoxvirus L2 protein MNHE PF01899.16 gi|294495414|ref|YP_003541907.1| - 1.1e-41 142.0 0.1 1.2e-41 141.9 0.1 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Proton_antipo_M PF00361.20 gi|294495415|ref|YP_003541908.1| - 1.6e-67 227.8 29.6 1.6e-67 227.8 29.6 2.5 3 0 0 3 3 3 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|294495415|ref|YP_003541908.1| - 0.00072 19.0 8.1 0.00072 19.0 8.1 3.5 2 2 1 3 3 3 2 NADH dehydrogenase I, subunit N related protein Proton_antipo_N PF00662.20 gi|294495415|ref|YP_003541908.1| - 0.0015 18.6 6.8 0.0016 18.5 0.1 3.7 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 gi|294495416|ref|YP_003541909.1| - 4.3e-35 119.5 3.1 5.7e-35 119.1 3.1 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MnhB PF04039.13 gi|294495417|ref|YP_003541910.1| - 2.1e-32 112.0 9.7 2.4e-32 111.9 9.7 1.0 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Proton_antipo_M PF00361.20 gi|294495418|ref|YP_003541911.1| - 7.3e-72 242.0 20.9 7.3e-72 242.0 20.9 2.5 2 0 0 2 2 2 1 Proton-conducting membrane transporter DUF4040 PF13244.6 gi|294495418|ref|YP_003541911.1| - 2.2e-19 69.4 13.0 2.2e-19 69.4 13.0 4.2 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) Proton_antipo_N PF00662.20 gi|294495418|ref|YP_003541911.1| - 7.3e-10 38.8 0.7 7.3e-10 38.8 0.7 4.3 5 1 0 5 5 5 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Neur PF00064.18 gi|294495419|ref|YP_003541912.1| - 0.061 12.1 0.1 0.28 9.9 0.0 1.8 2 0 0 2 2 2 0 Neuraminidase Cupredoxin_1 PF13473.6 gi|294495419|ref|YP_003541912.1| - 0.13 12.4 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Cupredoxin-like domain DUF2556 PF10831.8 gi|294495419|ref|YP_003541912.1| - 0.21 11.6 1.5 0.36 10.8 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2556) DEAD PF00270.29 gi|294495420|ref|YP_003541913.1| - 3.7e-28 98.5 0.0 7.6e-28 97.5 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|294495420|ref|YP_003541913.1| - 6.4e-19 68.5 0.0 1.8e-18 67.1 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|294495420|ref|YP_003541913.1| - 1.2e-13 51.3 0.1 1.8e-12 47.6 0.0 2.6 2 1 0 3 3 3 1 Helicase conserved C-terminal domain TPR_1 PF00515.28 gi|294495420|ref|YP_003541913.1| - 1.2e-10 40.7 0.5 0.028 14.2 0.0 4.0 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|294495420|ref|YP_003541913.1| - 4e-09 35.9 0.0 0.028 14.5 0.0 4.1 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|294495420|ref|YP_003541913.1| - 1.3e-07 32.0 0.0 4.8e-05 23.8 0.0 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|294495420|ref|YP_003541913.1| - 9.8e-06 25.4 0.1 0.3 11.4 0.0 4.0 3 0 0 3 3 3 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|294495420|ref|YP_003541913.1| - 2e-05 24.6 0.3 2.2 8.4 0.0 3.5 2 1 1 3 3 3 2 Fis1 C-terminal tetratricopeptide repeat TPR_12 PF13424.6 gi|294495420|ref|YP_003541913.1| - 0.00071 19.8 0.1 0.11 12.8 0.0 2.9 3 0 0 3 3 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|294495420|ref|YP_003541913.1| - 0.00087 19.5 0.3 0.0028 17.9 0.3 1.9 1 1 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_17 PF13431.6 gi|294495420|ref|YP_003541913.1| - 0.0054 17.0 0.4 0.049 14.0 0.0 2.9 3 0 0 3 3 2 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|294495420|ref|YP_003541913.1| - 0.0061 16.2 0.0 0.75 9.5 0.0 2.9 2 1 1 3 3 3 1 TPR repeat TPR_7 PF13176.6 gi|294495420|ref|YP_003541913.1| - 0.019 15.0 0.2 26 5.1 0.0 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|294495420|ref|YP_003541913.1| - 0.04 14.7 0.0 13 6.9 0.0 3.1 1 1 2 3 3 3 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|294495420|ref|YP_003541913.1| - 0.18 12.5 0.0 2.1 9.1 0.0 2.6 3 0 0 3 3 3 0 Tetratricopeptide repeat Hydantoinase_A PF01968.18 gi|294495421|ref|YP_003541914.1| - 1.3e-35 123.1 0.1 9.5e-33 113.7 0.0 3.1 3 0 0 3 3 3 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|294495421|ref|YP_003541914.1| - 3.9e-30 104.9 2.7 1.5e-27 96.4 0.4 3.3 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|294495421|ref|YP_003541914.1| - 2.3e-07 29.8 0.7 0.0072 15.0 0.1 2.4 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.20 gi|294495421|ref|YP_003541914.1| - 0.013 15.1 0.0 0.085 12.3 0.0 2.3 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family DprA_WH PF17782.1 gi|294495421|ref|YP_003541914.1| - 0.15 12.2 1.9 0.42 10.8 0.1 2.6 3 1 1 4 4 4 0 DprA winged helix domain LigD_N PF13298.6 gi|294495422|ref|YP_003541915.1| - 3e-38 130.3 0.0 3.8e-38 130.0 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) PPK2 PF03976.14 gi|294495423|ref|YP_003541916.1| - 6.7e-139 460.9 15.8 4e-85 285.0 9.4 2.0 2 0 0 2 2 2 2 Polyphosphate kinase 2 (PPK2) AAA_18 PF13238.6 gi|294495423|ref|YP_003541916.1| - 0.0038 17.8 1.4 0.29 11.7 0.1 2.9 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|294495423|ref|YP_003541916.1| - 0.28 11.3 1.3 1.7 8.8 0.7 2.7 2 1 0 2 2 2 0 AAA domain Ppx-GppA PF02541.16 gi|294495424|ref|YP_003541917.1| - 1e-33 117.0 0.0 6.9e-33 114.3 0.0 1.8 1 1 0 1 1 1 1 Ppx/GppA phosphatase family FtsA PF14450.6 gi|294495424|ref|YP_003541917.1| - 0.01 16.2 0.1 0.077 13.4 0.0 2.3 2 1 0 2 2 2 0 Cell division protein FtsA EutA PF06277.11 gi|294495424|ref|YP_003541917.1| - 0.055 12.3 0.1 0.17 10.7 0.1 1.9 2 1 0 2 2 2 0 Ethanolamine utilisation protein EutA AsnC_trans_reg2 PF17805.1 gi|294495424|ref|YP_003541917.1| - 0.068 13.3 0.1 0.16 12.2 0.1 1.5 1 0 0 1 1 1 0 AsnC-like ligand binding domain PP_kinase_C PF13090.6 gi|294495425|ref|YP_003541918.1| - 1.1e-68 230.0 1.6 1.1e-68 230.0 1.6 2.1 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 PP_kinase_C_1 PF17941.1 gi|294495425|ref|YP_003541918.1| - 4.1e-67 224.9 1.6 9.5e-67 223.7 0.7 2.1 1 1 1 2 2 2 1 Polyphosphate kinase C-terminal domain 1 PP_kinase PF02503.17 gi|294495425|ref|YP_003541918.1| - 1.9e-48 164.7 4.5 1.9e-48 164.7 2.8 1.9 2 0 0 2 2 2 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 gi|294495425|ref|YP_003541918.1| - 2.9e-36 124.1 1.0 7.9e-36 122.6 0.1 2.3 2 0 0 2 2 2 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|294495425|ref|YP_003541918.1| - 7.9e-12 45.2 1.4 1.2e-05 25.2 0.2 3.3 2 1 0 2 2 2 2 PLD-like domain Ntox27 PF15531.6 gi|294495425|ref|YP_003541918.1| - 0.067 13.1 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial toxin 27 CHAD PF05235.14 gi|294495426|ref|YP_003541919.1| - 4.3e-50 170.8 0.0 5.7e-50 170.4 0.0 1.2 1 0 0 1 1 1 1 CHAD domain Neur_chan_memb PF02932.16 gi|294495426|ref|YP_003541919.1| - 0.17 11.9 0.6 0.29 11.2 0.6 1.3 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region Mem_trans PF03547.18 gi|294495426|ref|YP_003541919.1| - 3.3 6.0 9.4 0.34 9.3 2.2 2.1 1 1 1 2 2 2 0 Membrane transport protein BH4 PF02180.17 gi|294495427|ref|YP_003541920.1| - 0.096 12.5 0.1 0.24 11.2 0.1 1.7 1 0 0 1 1 1 0 Bcl-2 homology region 4 PhoU PF01895.19 gi|294495428|ref|YP_003541921.1| - 9.3e-24 83.7 9.1 9.8e-19 67.6 3.0 2.7 2 1 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|294495428|ref|YP_003541921.1| - 2.3e-07 30.6 0.0 6.1e-07 29.2 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Proteasome PF00227.26 gi|294495429|ref|YP_003541922.1| - 6.2e-55 185.6 1.3 7.8e-55 185.3 1.3 1.0 1 0 0 1 1 1 1 Proteasome subunit KH_7 PF17214.3 gi|294495430|ref|YP_003541923.1| - 2.7e-29 100.9 3.5 2.2e-28 98.0 0.2 3.2 3 0 0 3 3 3 1 KH domain Beta-Casp PF10996.8 gi|294495430|ref|YP_003541923.1| - 5.1e-25 87.9 0.0 1.7e-24 86.2 0.0 2.0 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|294495430|ref|YP_003541923.1| - 2.3e-14 53.1 0.1 1.4e-13 50.6 0.0 2.3 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|294495430|ref|YP_003541923.1| - 1.4e-13 50.7 0.0 2.3e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|294495430|ref|YP_003541923.1| - 5.1e-13 49.5 1.5 5.4e-12 46.1 1.6 2.5 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|294495430|ref|YP_003541923.1| - 5.8e-09 35.7 0.1 1.5e-08 34.4 0.1 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|294495430|ref|YP_003541923.1| - 4.8e-05 23.1 3.2 0.00021 21.0 0.1 3.3 3 1 0 3 3 3 1 KH domain Lactamase_B_3 PF13483.6 gi|294495430|ref|YP_003541923.1| - 0.00016 21.6 0.0 0.00038 20.4 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_4 PF13083.6 gi|294495430|ref|YP_003541923.1| - 0.0027 17.5 0.1 0.01 15.7 0.0 2.0 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|294495430|ref|YP_003541923.1| - 0.003 17.4 0.2 0.03 14.2 0.2 2.6 2 0 0 2 2 2 1 KH domain HAD_2 PF13419.6 gi|294495431|ref|YP_003541924.1| - 6.1e-31 107.9 0.6 7.2e-31 107.6 0.6 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|294495431|ref|YP_003541924.1| - 2.8e-13 50.6 0.3 2.3e-12 47.7 0.3 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|294495431|ref|YP_003541924.1| - 0.0014 18.7 0.0 0.0027 17.7 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|294495431|ref|YP_003541924.1| - 0.0028 18.1 0.0 0.0042 17.5 0.0 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HTH_34 PF13601.6 gi|294495433|ref|YP_003541926.1| - 0.048 13.9 0.0 0.08 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.14 gi|294495433|ref|YP_003541926.1| - 0.093 12.7 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family P-II PF00543.22 gi|294495434|ref|YP_003541927.1| - 5.4e-05 23.7 0.3 6.2e-05 23.5 0.3 1.1 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II SSXT PF05030.12 gi|294495434|ref|YP_003541927.1| - 0.026 14.2 0.1 0.089 12.4 0.0 1.8 1 1 1 2 2 2 0 SSXT protein (N-terminal region) UPF0029 PF01205.19 gi|294495435|ref|YP_003541928.1| - 1e-30 106.2 0.0 1.7e-30 105.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|294495435|ref|YP_003541928.1| - 1.1e-09 38.0 0.4 2.2e-09 37.0 0.4 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) Phage-tail_3 PF13550.6 gi|294495435|ref|YP_003541928.1| - 0.14 12.0 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Putative phage tail protein MatE PF01554.18 gi|294495436|ref|YP_003541929.1| - 7.9e-52 175.1 44.8 3.9e-27 94.9 17.9 2.9 2 1 1 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|294495436|ref|YP_003541929.1| - 7.5e-11 42.3 29.2 1e-08 35.3 17.3 5.1 2 2 3 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Aldo_ket_red PF00248.21 gi|294495437|ref|YP_003541930.1| - 1.8e-41 142.3 0.0 5.8e-40 137.3 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|294495437|ref|YP_003541930.1| - 7.7e-11 42.4 8.2 1.7e-10 41.3 8.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294495437|ref|YP_003541930.1| - 3.6e-09 36.7 7.1 7.3e-09 35.7 7.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294495437|ref|YP_003541930.1| - 8.2e-06 25.8 6.8 1.6e-05 25.0 6.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|294495437|ref|YP_003541930.1| - 2.4e-05 24.7 6.2 5.2e-05 23.6 6.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|294495437|ref|YP_003541930.1| - 0.00024 21.6 8.0 0.00061 20.3 8.0 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|294495437|ref|YP_003541930.1| - 0.00048 19.8 10.9 0.00079 19.1 3.1 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|294495437|ref|YP_003541930.1| - 0.0019 18.4 7.7 0.027 14.7 1.0 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|294495437|ref|YP_003541930.1| - 0.017 14.9 2.1 0.017 14.9 2.1 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|294495437|ref|YP_003541930.1| - 0.023 14.8 10.0 0.24 11.6 1.3 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|294495437|ref|YP_003541930.1| - 0.036 14.9 3.4 0.13 13.1 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495437|ref|YP_003541930.1| - 0.15 13.0 10.7 0.39 11.7 10.1 2.0 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Sacchrp_dh_NADP PF03435.18 gi|294495437|ref|YP_003541930.1| - 0.19 12.0 0.0 0.41 10.9 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Fer4_2 PF12797.7 gi|294495437|ref|YP_003541930.1| - 0.42 10.8 13.9 1 9.6 2.7 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|294495437|ref|YP_003541930.1| - 3.4 8.4 15.2 0.85 10.3 4.9 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|294495437|ref|YP_003541930.1| - 3.7 7.8 14.7 0.18 11.9 3.6 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain HTH_45 PF14947.6 gi|294495438|ref|YP_003541931.1| - 1.9e-25 88.6 1.2 2.1e-25 88.5 1.2 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix FtsK_gamma PF09397.10 gi|294495438|ref|YP_003541931.1| - 0.011 15.6 0.1 0.018 14.8 0.1 1.4 1 0 0 1 1 1 0 Ftsk gamma domain TrmB PF01978.19 gi|294495438|ref|YP_003541931.1| - 0.022 14.6 0.0 0.039 13.8 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|294495438|ref|YP_003541931.1| - 0.069 13.3 0.1 0.08 13.1 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Lysine_decarbox PF03641.14 gi|294495438|ref|YP_003541931.1| - 0.082 13.0 0.0 0.094 12.8 0.0 1.1 1 0 0 1 1 1 0 Possible lysine decarboxylase DUF1803 PF08820.10 gi|294495438|ref|YP_003541931.1| - 0.12 12.4 0.1 0.14 12.2 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1803) DUF1699 PF08004.11 gi|294495439|ref|YP_003541932.1| - 8e-29 100.0 0.1 8.4e-29 99.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) GDE_C PF06202.14 gi|294495440|ref|YP_003541933.1| - 8e-134 446.4 0.0 1.1e-133 445.9 0.0 1.1 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.8 gi|294495440|ref|YP_003541933.1| - 2e-78 262.8 0.2 3e-78 262.2 0.2 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal DUF608 PF04685.13 gi|294495440|ref|YP_003541933.1| - 7e-06 25.5 0.7 1.6e-05 24.3 0.7 1.5 1 0 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Glyco_hydro_100 PF12899.7 gi|294495440|ref|YP_003541933.1| - 0.00012 20.9 0.4 0.41 9.3 0.0 2.4 2 1 0 2 2 2 2 Alkaline and neutral invertase Bac_rhamnosid6H PF17389.2 gi|294495440|ref|YP_003541933.1| - 0.00033 20.0 0.1 0.00048 19.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain DUF481 PF04338.12 gi|294495440|ref|YP_003541933.1| - 0.0071 16.4 0.6 0.019 15.0 0.6 1.8 1 0 0 1 1 1 1 Protein of unknown function, DUF481 Glyco_hydro_63 PF03200.16 gi|294495440|ref|YP_003541933.1| - 0.022 13.5 0.1 0.098 11.4 0.0 1.9 2 0 0 2 2 2 0 Glycosyl hydrolase family 63 C-terminal domain DUF3078 PF11276.8 gi|294495440|ref|YP_003541933.1| - 0.14 12.6 0.9 1.4 9.4 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3078) Glyco_hydro_15 PF00723.21 gi|294495441|ref|YP_003541934.1| - 1.8e-11 43.5 0.0 1.5e-05 24.0 0.2 3.5 1 1 2 3 3 3 3 Glycosyl hydrolases family 15 Glucodextran_N PF09137.11 gi|294495441|ref|YP_003541934.1| - 1.3e-06 28.2 0.0 1.8e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Glucodextranase, domain N DUF3938 PF13074.6 gi|294495441|ref|YP_003541934.1| - 0.13 12.5 0.0 0.35 11.1 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3938) Glyco_hydro_57 PF03065.15 gi|294495442|ref|YP_003541935.1| - 3.7e-61 207.1 0.1 6e-61 206.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|294495442|ref|YP_003541935.1| - 0.086 12.7 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Polysaccharide deacetylase Glyco_hydro_57 PF03065.15 gi|294495443|ref|YP_003541936.1| - 1.6e-35 122.9 0.0 2.2e-35 122.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 RUN PF02759.19 gi|294495443|ref|YP_003541936.1| - 0.03 14.3 0.0 0.063 13.2 0.0 1.4 1 0 0 1 1 1 0 RUN domain Glycos_transf_1 PF00534.20 gi|294495444|ref|YP_003541937.1| - 3.4e-25 88.6 0.0 7.2e-25 87.5 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|294495444|ref|YP_003541937.1| - 6.3e-25 88.1 0.2 1e-24 87.4 0.2 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|294495444|ref|YP_003541937.1| - 1.6e-21 77.1 0.0 2.9e-21 76.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|294495444|ref|YP_003541937.1| - 2.8e-17 63.2 0.6 1.1e-15 58.0 0.6 2.3 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 gi|294495444|ref|YP_003541937.1| - 1.5e-15 58.0 0.0 2.3e-15 57.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|294495444|ref|YP_003541937.1| - 5.3e-09 36.2 0.0 1e-08 35.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|294495444|ref|YP_003541937.1| - 0.01 16.2 0.0 0.018 15.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 DUF4921 PF16268.5 gi|294495445|ref|YP_003541938.1| - 1.3e-17 63.8 0.0 9.5e-14 51.0 0.0 2.2 1 1 0 2 2 2 2 Domain of unknown function (DUF4921) GalP_UDP_transf PF01087.22 gi|294495445|ref|YP_003541938.1| - 1.3e-13 51.8 0.0 4.5e-13 50.0 0.0 1.8 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain DUF4931 PF16285.5 gi|294495445|ref|YP_003541938.1| - 8.6e-06 25.2 1.4 1.8e-05 24.2 0.1 2.2 2 1 1 3 3 3 1 Domain of unknown function (DUF4931) HIT PF01230.23 gi|294495445|ref|YP_003541938.1| - 1.8e-05 25.4 0.1 0.038 14.7 0.0 2.3 2 0 0 2 2 2 2 HIT domain DcpS_C PF11969.8 gi|294495445|ref|YP_003541938.1| - 3.9e-05 24.1 0.6 0.00027 21.4 0.0 2.4 3 0 0 3 3 3 1 Scavenger mRNA decapping enzyme C-term binding GalP_UDP_tr_C PF02744.17 gi|294495445|ref|YP_003541938.1| - 0.00046 19.9 0.0 0.00076 19.2 0.0 1.4 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DUF5351 PF17302.2 gi|294495445|ref|YP_003541938.1| - 1.9 8.8 4.8 3.5 7.9 0.8 2.7 2 0 0 2 2 2 0 Family of unknown function (DUF5351) Glycogen_syn PF05693.13 gi|294495446|ref|YP_003541939.1| - 6.1e-15 54.8 0.0 3.2e-08 32.6 0.0 2.5 2 1 0 2 2 2 2 Glycogen synthase Glyco_transf_4 PF13439.6 gi|294495446|ref|YP_003541939.1| - 1.5e-06 28.3 0.0 4.6e-06 26.7 0.0 1.8 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|294495446|ref|YP_003541939.1| - 0.0038 16.8 0.1 0.0092 15.5 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 RIO1 PF01163.22 gi|294495448|ref|YP_003541941.1| - 0.022 14.4 0.0 5.4 6.6 0.0 2.2 1 1 1 2 2 2 0 RIO1 family HBD PF18534.1 gi|294495448|ref|YP_003541941.1| - 0.031 14.4 0.4 0.075 13.2 0.4 1.6 1 0 0 1 1 1 0 Helical bundle domain HAD_2 PF13419.6 gi|294495449|ref|YP_003541942.1| - 3.3e-15 56.6 0.0 4.3e-15 56.2 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|294495449|ref|YP_003541942.1| - 1.7e-07 31.8 0.0 1.7e-06 28.5 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|294495449|ref|YP_003541942.1| - 3.2e-06 27.1 0.0 5.6e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like B-block_TFIIIC PF04182.12 gi|294495450|ref|YP_003541943.1| - 0.0038 17.3 0.0 0.0049 17.0 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.22 gi|294495450|ref|YP_003541943.1| - 0.017 15.0 0.0 0.047 13.6 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 gi|294495450|ref|YP_003541943.1| - 0.018 14.6 0.1 0.03 13.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TetR_C_28 PF17937.1 gi|294495450|ref|YP_003541943.1| - 0.022 15.2 0.0 2.8 8.4 0.0 2.3 2 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain LSM PF01423.22 gi|294495451|ref|YP_003541944.1| - 3.7e-20 71.4 0.4 4.1e-20 71.2 0.4 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|294495451|ref|YP_003541944.1| - 0.13 12.4 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain DUF3467 PF11950.8 gi|294495452|ref|YP_003541945.1| - 1.4e-16 60.5 0.0 1.7e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) DEAD PF00270.29 gi|294495453|ref|YP_003541946.1| - 5.1e-23 81.7 0.0 1.1e-22 80.7 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|294495453|ref|YP_003541946.1| - 7e-15 55.3 0.0 3.8e-14 53.0 0.0 2.4 1 1 1 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|294495453|ref|YP_003541946.1| - 2e-11 44.2 0.0 5.6e-11 42.7 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|294495453|ref|YP_003541946.1| - 0.0053 15.5 0.0 0.0076 15.0 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain ATPase PF06745.13 gi|294495454|ref|YP_003541947.1| - 0.00014 21.3 0.0 0.00019 20.9 0.0 1.2 1 0 0 1 1 1 1 KaiC PNP_UDP_1 PF01048.20 gi|294495455|ref|YP_003541948.1| - 4.6e-38 130.8 0.0 5.2e-38 130.6 0.0 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily DUF373 PF04123.13 gi|294495456|ref|YP_003541949.1| - 2e-129 431.8 3.1 2.4e-129 431.6 3.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) NusG_add PF18298.1 gi|294495456|ref|YP_003541949.1| - 0.047 13.9 0.1 0.11 12.8 0.1 1.6 1 0 0 1 1 1 0 NusG additional domain MAF_flag10 PF01973.18 gi|294495457|ref|YP_003541950.1| - 1.7e-30 105.9 0.1 2.1e-30 105.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|294495457|ref|YP_003541950.1| - 0.0018 18.3 0.0 0.0031 17.6 0.0 1.4 1 0 0 1 1 1 1 Thiamin pyrophosphokinase, catalytic domain DUF2100 PF09873.9 gi|294495457|ref|YP_003541950.1| - 0.13 12.1 0.9 4.4 7.1 0.4 2.9 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2100) tRNA-synt_1 PF00133.22 gi|294495458|ref|YP_003541951.1| - 5.1e-205 682.2 6.5 7e-205 681.8 6.5 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|294495458|ref|YP_003541951.1| - 4.1e-35 121.0 0.6 9.4e-35 119.8 0.6 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|294495458|ref|YP_003541951.1| - 1.3e-25 90.0 5.7 1.6e-11 43.6 0.3 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|294495458|ref|YP_003541951.1| - 4.2e-07 29.6 0.0 1.5e-06 27.8 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|294495458|ref|YP_003541951.1| - 0.00035 20.1 0.2 0.00094 18.7 0.2 1.7 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|294495458|ref|YP_003541951.1| - 0.00059 18.9 0.7 0.0023 16.9 0.0 2.2 3 0 0 3 3 3 1 tRNA synthetases class I (K) Thioredoxin PF00085.20 gi|294495458|ref|YP_003541951.1| - 0.095 12.7 0.5 15 5.6 0.0 3.2 3 0 0 3 3 3 0 Thioredoxin PUA PF01472.20 gi|294495459|ref|YP_003541952.1| - 4e-17 62.0 1.4 6.3e-17 61.3 1.4 1.3 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|294495459|ref|YP_003541952.1| - 6.3e-07 29.6 0.2 1.1e-06 28.8 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) Pre-PUA PF17832.1 gi|294495459|ref|YP_003541952.1| - 8.2e-05 23.2 0.1 0.00054 20.6 0.1 2.0 1 1 0 1 1 1 1 Pre-PUA-like domain UPF0113 PF03657.13 gi|294495459|ref|YP_003541952.1| - 0.0012 19.0 0.1 0.0018 18.5 0.1 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain SepF PF04472.12 gi|294495460|ref|YP_003541953.1| - 4.6e-12 46.0 0.5 6.4e-12 45.6 0.5 1.2 1 0 0 1 1 1 1 Cell division protein SepF Transposase_31 PF04754.12 gi|294495460|ref|YP_003541953.1| - 0.0066 16.1 0.0 0.0079 15.8 0.0 1.1 1 0 0 1 1 1 1 Putative transposase, YhgA-like zf-ZPR1 PF03367.13 gi|294495461|ref|YP_003541954.1| - 8.3e-36 123.2 0.2 1.1e-35 122.8 0.2 1.2 1 0 0 1 1 1 1 ZPR1 zinc-finger domain tRNA-synt_2b PF00587.25 gi|294495462|ref|YP_003541955.1| - 1.1e-26 94.0 0.0 1.6e-26 93.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|294495462|ref|YP_003541955.1| - 8.6e-22 77.1 0.0 1.7e-21 76.2 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|294495462|ref|YP_003541955.1| - 3.8e-14 52.6 0.4 7.9e-14 51.6 0.4 1.5 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal SBP_bac_5 PF00496.22 gi|294495462|ref|YP_003541955.1| - 0.14 11.1 0.0 0.22 10.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle Ribosomal_L15e PF00827.17 gi|294495464|ref|YP_003541957.1| - 5.1e-83 277.5 10.4 5.8e-83 277.3 10.4 1.0 1 0 0 1 1 1 1 Ribosomal L15 FXMRP1_C_core PF12235.8 gi|294495464|ref|YP_003541957.1| - 0.024 15.3 14.5 0.038 14.6 6.4 2.1 2 0 0 2 2 2 0 Fragile X-related 1 protein core C terminal RNA_binding PF01877.17 gi|294495465|ref|YP_003541958.1| - 2.4e-34 118.2 0.4 3.3e-34 117.7 0.4 1.2 1 0 0 1 1 1 1 RNA binding Sigma54_activ_2 PF14532.6 gi|294495465|ref|YP_003541958.1| - 0.05 13.7 0.1 4 7.5 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain RNase_P_p30 PF01876.16 gi|294495466|ref|YP_003541959.1| - 4.7e-47 160.2 0.0 6.1e-47 159.9 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 DUF1654 PF07867.11 gi|294495466|ref|YP_003541959.1| - 0.08 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1654) PHP PF02811.19 gi|294495466|ref|YP_003541959.1| - 0.085 13.2 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 PHP domain RNase_P_Rpp14 PF01900.19 gi|294495467|ref|YP_003541960.1| - 6.5e-19 68.1 0.0 7.6e-19 67.9 0.0 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.26 gi|294495468|ref|YP_003541961.1| - 2.5e-62 209.8 0.8 4.3e-62 209.0 0.8 1.4 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|294495468|ref|YP_003541961.1| - 1.9e-14 53.0 0.6 6.3e-14 51.3 0.1 2.1 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature SBDS PF01172.18 gi|294495469|ref|YP_003541962.1| - 2.6e-23 81.9 0.1 4.2e-23 81.2 0.1 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|294495469|ref|YP_003541962.1| - 4.3e-22 78.3 0.1 5.8e-22 77.9 0.1 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain KH_6 PF15985.5 gi|294495470|ref|YP_003541963.1| - 1.6e-09 38.0 0.0 3.4e-09 36.9 0.0 1.6 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.6 gi|294495470|ref|YP_003541963.1| - 6.5e-06 25.8 0.0 1.2e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_2 PF07650.17 gi|294495470|ref|YP_003541963.1| - 1.8e-05 24.5 0.1 4.3e-05 23.3 0.1 1.7 1 1 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|294495470|ref|YP_003541963.1| - 1.9e-05 24.4 0.7 3.8e-05 23.4 0.7 1.5 1 0 0 1 1 1 1 KH domain RNase_PH PF01138.21 gi|294495471|ref|YP_003541964.1| - 2.4e-32 112.2 0.0 3.6e-32 111.6 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|294495471|ref|YP_003541964.1| - 2.1e-18 66.1 0.1 3.8e-18 65.3 0.1 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Cytomega_UL84 PF06284.11 gi|294495471|ref|YP_003541964.1| - 0.7 8.3 7.7 0.99 7.8 7.7 1.2 1 0 0 1 1 1 0 Cytomegalovirus UL84 protein RNase_PH PF01138.21 gi|294495472|ref|YP_003541965.1| - 2.8e-30 105.5 0.0 5.3e-30 104.6 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|294495472|ref|YP_003541965.1| - 2.7e-13 49.7 0.2 5.1e-13 48.9 0.2 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.19 gi|294495473|ref|YP_003541966.1| - 3.9e-32 110.2 5.7 4.6e-32 109.9 5.7 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family HalOD2 PF18547.1 gi|294495473|ref|YP_003541966.1| - 0.0083 16.0 0.8 0.0083 16.0 0.8 2.2 2 1 1 3 3 3 1 Halobacterial output domain 2 Rep_fac-A_C PF08646.10 gi|294495473|ref|YP_003541966.1| - 0.061 13.1 0.1 0.08 12.7 0.1 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain Zn-ribbon_8 PF09723.10 gi|294495473|ref|YP_003541966.1| - 0.071 13.2 1.6 3.5 7.8 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|294495473|ref|YP_003541966.1| - 0.079 13.0 3.0 0.12 12.4 3.0 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|294495474|ref|YP_003541967.1| - 2e-06 27.3 8.3 2.7e-06 26.9 8.3 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.19 gi|294495474|ref|YP_003541967.1| - 0.0003 20.8 0.2 0.0003 20.8 0.2 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|294495474|ref|YP_003541967.1| - 0.0022 17.6 0.6 0.85 9.3 0.2 2.1 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger TF_Zn_Ribbon PF08271.12 gi|294495474|ref|YP_003541967.1| - 0.0043 16.5 1.1 0.0056 16.2 1.1 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|294495474|ref|YP_003541967.1| - 0.0048 16.3 1.0 0.017 14.5 0.1 1.9 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|294495474|ref|YP_003541967.1| - 0.0061 16.8 0.9 0.009 16.3 0.9 1.2 1 0 0 1 1 1 1 zinc-ribbon zinc_ribbon_2 PF13240.6 gi|294495474|ref|YP_003541967.1| - 0.0073 16.0 1.8 0.013 15.2 1.8 1.4 1 1 0 1 1 1 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|294495474|ref|YP_003541967.1| - 0.0092 16.1 2.8 0.015 15.4 2.8 1.4 1 1 0 1 1 1 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|294495474|ref|YP_003541967.1| - 0.0095 15.8 1.9 0.014 15.3 1.9 1.4 1 1 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|294495474|ref|YP_003541967.1| - 0.013 15.5 4.1 0.08 12.9 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Anti-TRAP PF15777.5 gi|294495474|ref|YP_003541967.1| - 0.017 15.1 0.1 0.018 15.0 0.1 1.1 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF3797 PF12677.7 gi|294495474|ref|YP_003541967.1| - 0.022 14.7 1.0 0.022 14.7 1.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3797) DZR PF12773.7 gi|294495474|ref|YP_003541967.1| - 0.029 14.4 1.1 0.087 12.9 1.4 1.3 1 1 0 1 1 1 0 Double zinc ribbon Cys_rich_CPXG PF14255.6 gi|294495474|ref|YP_003541967.1| - 0.035 14.0 0.9 0.21 11.5 0.1 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG Ribosomal_S27e PF01667.17 gi|294495474|ref|YP_003541967.1| - 0.047 13.4 0.6 0.43 10.3 0.5 1.9 1 1 0 1 1 1 0 Ribosomal protein S27 zinc_ribbon_6 PF14599.6 gi|294495474|ref|YP_003541967.1| - 0.052 13.6 1.1 0.062 13.3 1.1 1.1 1 0 0 1 1 1 0 Zinc-ribbon DUF2072 PF09845.9 gi|294495474|ref|YP_003541967.1| - 0.061 13.6 0.3 0.061 13.6 0.3 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein zf-LITAF-like PF10601.9 gi|294495474|ref|YP_003541967.1| - 0.15 12.3 2.2 2.6 8.4 0.1 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Desulfoferrod_N PF06397.12 gi|294495474|ref|YP_003541967.1| - 0.25 11.0 4.3 5.8 6.6 0.5 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain zinc_ribbon_4 PF13717.6 gi|294495474|ref|YP_003541967.1| - 0.25 11.3 3.8 7.6 6.5 3.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Cys_rich_KTR PF14205.6 gi|294495474|ref|YP_003541967.1| - 0.31 10.9 3.4 0.51 10.2 0.3 2.0 1 1 1 2 2 2 0 Cysteine-rich KTR Zn_ribbon_SprT PF17283.2 gi|294495474|ref|YP_003541967.1| - 0.4 10.6 7.7 6.8 6.7 1.1 2.3 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Mu-like_Com PF10122.9 gi|294495474|ref|YP_003541967.1| - 1.3 8.5 4.7 5.9 6.4 4.7 2.0 1 1 0 1 1 1 0 Mu-like prophage protein Com Pcc1 PF09341.10 gi|294495476|ref|YP_003541969.1| - 4e-05 23.7 0.2 4.7e-05 23.4 0.2 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 DUF111 PF01969.17 gi|294495478|ref|YP_003541971.1| - 2.1e-124 415.5 0.1 2.3e-124 415.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 AIRC PF00731.20 gi|294495479|ref|YP_003541972.1| - 2.1e-18 66.3 4.3 2.2e-18 66.3 2.9 1.7 2 0 0 2 2 2 1 AIR carboxylase Hexapep PF00132.24 gi|294495480|ref|YP_003541973.1| - 8.3e-16 57.0 11.7 5.5e-06 25.9 0.0 4.2 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|294495480|ref|YP_003541973.1| - 5.1e-06 26.1 10.1 0.0086 15.8 1.0 3.4 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|294495480|ref|YP_003541973.1| - 0.0018 17.3 0.5 0.085 11.8 0.1 2.0 1 1 1 2 2 2 2 L-fucokinase Thioredoxin_3 PF13192.6 gi|294495481|ref|YP_003541974.1| - 7e-27 93.3 2.6 7.6e-27 93.2 2.6 1.0 1 0 0 1 1 1 1 Thioredoxin domain ArsD PF06953.11 gi|294495481|ref|YP_003541974.1| - 0.01 16.2 0.0 0.019 15.3 0.0 1.3 1 1 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD Thioredoxin_4 PF13462.6 gi|294495481|ref|YP_003541974.1| - 0.011 15.9 1.3 0.33 11.1 0.1 1.9 1 1 1 2 2 2 0 Thioredoxin DUF1611 PF07755.11 gi|294495481|ref|YP_003541974.1| - 0.015 14.6 0.4 0.016 14.5 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain Glutaredoxin PF00462.24 gi|294495481|ref|YP_003541974.1| - 0.045 14.0 0.1 0.068 13.4 0.1 1.4 1 0 0 1 1 1 0 Glutaredoxin BAT PF15915.5 gi|294495481|ref|YP_003541974.1| - 0.05 13.5 0.0 0.06 13.2 0.0 1.0 1 0 0 1 1 1 0 GAF and HTH_10 associated domain zinc_ribbon_4 PF13717.6 gi|294495481|ref|YP_003541974.1| - 0.059 13.3 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain NinF PF05810.12 gi|294495481|ref|YP_003541974.1| - 0.06 13.2 0.0 0.084 12.8 0.0 1.1 1 0 0 1 1 1 0 NinF protein DUF1525 PF07511.11 gi|294495481|ref|YP_003541974.1| - 0.064 13.4 0.1 0.073 13.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1525) FtsK_alpha PF17854.1 gi|294495481|ref|YP_003541974.1| - 0.085 13.0 0.0 0.1 12.8 0.0 1.1 1 0 0 1 1 1 0 FtsK alpha domain Metallophos_2 PF12850.7 gi|294495482|ref|YP_003541975.1| - 1e-32 113.6 0.0 1.2e-32 113.3 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|294495482|ref|YP_003541975.1| - 2.2e-15 57.7 0.3 1e-14 55.5 0.4 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase FBPase_2 PF06874.11 gi|294495482|ref|YP_003541975.1| - 0.0032 15.9 0.2 0.015 13.6 0.1 1.8 1 1 1 2 2 2 1 Firmicute fructose-1,6-bisphosphatase Metallophos_3 PF14582.6 gi|294495482|ref|YP_003541975.1| - 0.017 14.5 0.2 0.49 9.7 0.1 2.3 2 1 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily ArsP_1 PF03773.13 gi|294495483|ref|YP_003541976.1| - 9.3e-83 277.8 27.3 1.1e-82 277.5 27.3 1.0 1 0 0 1 1 1 1 Predicted permease Peptidase_U32 PF01136.19 gi|294495484|ref|YP_003541977.1| - 9.7e-91 303.1 0.0 4.6e-73 245.2 0.0 2.6 2 1 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.8 gi|294495484|ref|YP_003541977.1| - 5.2e-19 68.9 0.7 1.1e-18 67.8 0.1 1.9 2 0 0 2 2 2 1 Collagenase PrpR_N PF06506.11 gi|294495484|ref|YP_003541977.1| - 0.0044 16.6 0.6 1.2 8.7 0.0 3.1 3 0 0 3 3 3 2 Propionate catabolism activator PEP_mutase PF13714.6 gi|294495484|ref|YP_003541977.1| - 0.069 12.6 0.0 18 4.6 0.0 3.1 3 0 0 3 3 3 0 Phosphoenolpyruvate phosphomutase NAPRTase PF04095.16 gi|294495486|ref|YP_003541979.1| - 2.5e-58 197.6 0.0 3.5e-58 197.1 0.0 1.1 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family NAPRTase_N PF17767.1 gi|294495486|ref|YP_003541979.1| - 2.4e-31 108.7 0.3 4.7e-31 107.8 0.3 1.5 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Ndufs5 PF10200.9 gi|294495486|ref|YP_003541979.1| - 0.1 12.9 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 NADH:ubiquinone oxidoreductase, NDUFS5-15kDa HTH_20 PF12840.7 gi|294495487|ref|YP_003541980.1| - 2.4e-11 43.5 0.2 3.6e-11 43.0 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|294495487|ref|YP_003541980.1| - 4.1e-11 42.6 0.1 6.4e-11 41.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|294495487|ref|YP_003541980.1| - 2.7e-05 24.0 0.4 5.8e-05 22.9 0.1 1.7 2 0 0 2 2 2 1 HTH domain PadR PF03551.14 gi|294495487|ref|YP_003541980.1| - 0.00014 21.8 0.1 0.00043 20.2 0.1 1.7 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|294495487|ref|YP_003541980.1| - 0.00061 19.6 0.0 0.00083 19.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|294495487|ref|YP_003541980.1| - 0.0014 18.1 0.1 0.0026 17.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|294495487|ref|YP_003541980.1| - 0.0079 16.3 0.2 0.012 15.8 0.2 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Mga PF05043.13 gi|294495487|ref|YP_003541980.1| - 0.01 16.4 0.1 0.028 15.0 0.0 1.7 1 1 1 2 2 2 0 Mga helix-turn-helix domain HTH_29 PF13551.6 gi|294495487|ref|YP_003541980.1| - 0.016 15.2 0.1 0.025 14.6 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_10 PF04967.12 gi|294495487|ref|YP_003541980.1| - 0.018 14.8 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain Rrf2 PF02082.20 gi|294495487|ref|YP_003541980.1| - 0.018 15.4 0.0 0.026 14.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.22 gi|294495487|ref|YP_003541980.1| - 0.021 14.7 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 MarR family GntR PF00392.21 gi|294495487|ref|YP_003541980.1| - 0.026 14.2 0.1 0.055 13.1 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|294495487|ref|YP_003541980.1| - 0.027 14.3 0.0 0.034 14.0 0.0 1.2 1 0 0 1 1 1 0 MarR family HxlR PF01638.17 gi|294495487|ref|YP_003541980.1| - 0.054 13.3 0.1 0.073 12.9 0.1 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_23 PF13384.6 gi|294495487|ref|YP_003541980.1| - 0.13 12.1 0.1 0.21 11.5 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain TssO PF17561.2 gi|294495488|ref|YP_003541981.1| - 0.00025 21.2 0.0 0.00027 21.0 0.0 1.0 1 0 0 1 1 1 1 Type VI secretion system, TssO Trimer_CC PF08954.11 gi|294495488|ref|YP_003541981.1| - 0.018 14.6 0.7 0.021 14.3 0.7 1.1 1 0 0 1 1 1 0 Trimerisation motif DUF4956 PF16316.5 gi|294495488|ref|YP_003541981.1| - 0.063 13.0 0.1 0.072 12.7 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4956) DUF4381 PF14316.6 gi|294495488|ref|YP_003541981.1| - 0.075 13.3 0.0 0.087 13.1 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) DUF4083 PF13314.6 gi|294495488|ref|YP_003541981.1| - 0.43 10.5 5.5 1.5 8.8 0.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4083) NYD-SP28 PF14772.6 gi|294495489|ref|YP_003541982.1| - 0.014 15.4 1.4 0.017 15.1 1.4 1.1 1 0 0 1 1 1 0 Sperm tail Vps5 PF09325.10 gi|294495489|ref|YP_003541982.1| - 0.025 14.1 1.4 0.029 13.9 1.4 1.0 1 0 0 1 1 1 0 Vps5 C terminal like DUF169 PF02596.15 gi|294495491|ref|YP_003541984.1| - 1.9e-60 204.4 0.0 2.1e-60 204.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Yip1 PF04893.17 gi|294495494|ref|YP_003541987.1| - 1e-29 103.5 15.7 1.3e-29 103.1 15.7 1.0 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.12 gi|294495494|ref|YP_003541987.1| - 0.0038 17.0 4.5 0.0063 16.3 4.5 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) DUF3887 PF13026.6 gi|294495495|ref|YP_003541988.1| - 1.2e-09 38.8 0.2 1.6e-09 38.4 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3887) Tudor_2 PF18104.1 gi|294495495|ref|YP_003541988.1| - 0.002 17.8 0.3 0.039 13.6 0.1 2.2 2 0 0 2 2 2 1 Jumonji domain-containing protein 2A Tudor domain LPAM_1 PF08139.12 gi|294495495|ref|YP_003541988.1| - 7 7.4 6.5 0.82 10.3 1.9 1.9 2 0 0 2 2 2 0 Prokaryotic membrane lipoprotein lipid attachment site HATPase_c PF02518.26 gi|294495496|ref|YP_003541989.1| - 9.1e-28 97.0 0.5 2.3e-27 95.7 0.5 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_1 PF02743.18 gi|294495496|ref|YP_003541989.1| - 4.7e-23 82.3 4.9 9.3e-23 81.3 4.9 1.5 1 0 0 1 1 1 1 Cache domain HisKA PF00512.25 gi|294495496|ref|YP_003541989.1| - 3.8e-20 71.7 3.1 2.1e-19 69.3 0.6 2.9 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|294495496|ref|YP_003541989.1| - 1.8e-06 27.8 0.0 6.4e-06 26.0 0.0 2.0 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|294495496|ref|YP_003541989.1| - 0.0001 22.1 0.2 0.00069 19.5 0.1 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHASE PF03924.13 gi|294495496|ref|YP_003541989.1| - 0.00044 20.2 0.0 0.00077 19.5 0.0 1.3 1 0 0 1 1 1 1 CHASE domain DUF1043 PF06295.12 gi|294495496|ref|YP_003541989.1| - 0.012 15.6 0.6 1.2 9.2 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1043) dCache_2 PF08269.11 gi|294495496|ref|YP_003541989.1| - 0.015 14.5 0.1 0.015 14.5 0.1 2.6 3 1 0 3 3 3 0 Cache domain MFS_Mycoplasma PF07672.13 gi|294495496|ref|YP_003541989.1| - 0.018 14.4 6.2 0.029 13.7 2.0 2.1 2 0 0 2 2 2 0 Mycoplasma MFS transporter sCache_2 PF17200.4 gi|294495496|ref|YP_003541989.1| - 0.031 14.1 1.9 0.66 9.8 0.2 2.6 2 0 0 2 2 2 0 Single Cache domain 2 HATPase_c_2 PF13581.6 gi|294495496|ref|YP_003541989.1| - 0.044 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Tetraspanin PF00335.20 gi|294495496|ref|YP_003541989.1| - 0.42 10.3 1.6 2 8.1 0.2 2.1 2 0 0 2 2 2 0 Tetraspanin family Response_reg PF00072.24 gi|294495497|ref|YP_003541990.1| - 5.1e-35 120.0 0.4 6.8e-35 119.6 0.4 1.2 1 0 0 1 1 1 1 Response regulator receiver domain HTH_AsnC-type PF13404.6 gi|294495497|ref|YP_003541990.1| - 1.2e-07 31.4 0.1 2.5e-07 30.4 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|294495497|ref|YP_003541990.1| - 2.2e-07 30.3 0.1 5e-07 29.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Mga PF08280.11 gi|294495497|ref|YP_003541990.1| - 4e-05 23.6 0.2 0.00017 21.6 0.2 1.9 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_11 PF08279.12 gi|294495497|ref|YP_003541990.1| - 5.2e-05 23.1 0.5 0.00016 21.6 0.4 2.0 1 1 1 2 2 2 1 HTH domain HTH_Tnp_Tc3_2 PF01498.18 gi|294495497|ref|YP_003541990.1| - 0.0025 18.0 0.0 0.0066 16.7 0.0 1.8 1 0 0 1 1 1 1 Transposase HTH_5 PF01022.20 gi|294495497|ref|YP_003541990.1| - 0.0039 17.0 0.6 0.0064 16.3 0.1 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|294495497|ref|YP_003541990.1| - 0.014 15.1 0.0 0.026 14.2 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|294495497|ref|YP_003541990.1| - 0.026 14.6 0.1 0.074 13.1 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain TusA PF01206.17 gi|294495497|ref|YP_003541990.1| - 0.036 13.9 0.0 0.075 12.9 0.0 1.5 1 0 0 1 1 1 0 Sulfurtransferase TusA Sigma54_AID PF00309.20 gi|294495497|ref|YP_003541990.1| - 0.12 12.3 0.4 0.44 10.4 0.2 2.1 2 0 0 2 2 2 0 Sigma-54 factor, Activator interacting domain (AID) HTH_IclR PF09339.10 gi|294495498|ref|YP_003541991.1| - 1.3e-05 24.8 0.0 1.9e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|294495498|ref|YP_003541991.1| - 2.4e-05 24.2 0.0 3.5e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|294495498|ref|YP_003541991.1| - 0.001 18.6 0.0 0.0017 17.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|294495498|ref|YP_003541991.1| - 0.0018 18.6 0.0 0.0025 18.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_9 PF08221.11 gi|294495498|ref|YP_003541991.1| - 0.0027 17.8 0.0 0.0045 17.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.19 gi|294495498|ref|YP_003541991.1| - 0.0032 17.3 0.0 0.0044 16.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|294495498|ref|YP_003541991.1| - 0.013 15.5 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain FUR PF01475.19 gi|294495498|ref|YP_003541991.1| - 0.026 14.7 0.0 0.028 14.6 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family MarR PF01047.22 gi|294495498|ref|YP_003541991.1| - 0.029 14.3 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 gi|294495498|ref|YP_003541991.1| - 0.042 13.8 0.0 0.06 13.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|294495498|ref|YP_003541991.1| - 0.049 13.6 0.0 0.067 13.2 0.0 1.2 1 0 0 1 1 1 0 HTH domain HTH_5 PF01022.20 gi|294495498|ref|YP_003541991.1| - 0.053 13.4 0.1 0.074 12.9 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_46 PF15977.5 gi|294495498|ref|YP_003541991.1| - 0.07 13.1 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding HTH_Crp_2 PF13545.6 gi|294495498|ref|YP_003541991.1| - 0.089 12.8 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RP-C PF03428.13 gi|294495498|ref|YP_003541991.1| - 0.092 12.4 0.0 0.13 11.9 0.0 1.4 1 1 0 1 1 1 0 Replication protein C N-terminal domain TBPIP PF07106.13 gi|294495498|ref|YP_003541991.1| - 0.099 12.6 0.0 0.7 9.9 0.0 2.0 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain HTH_27 PF13463.6 gi|294495498|ref|YP_003541991.1| - 0.14 12.7 0.0 0.17 12.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sensor PF13796.6 gi|294495499|ref|YP_003541992.1| - 1.4e-40 139.0 10.5 1.8e-40 138.7 10.5 1.1 1 0 0 1 1 1 1 Putative sensor Sec61_beta PF03911.16 gi|294495499|ref|YP_003541992.1| - 0.16 12.0 0.4 0.16 12.0 0.4 3.1 3 0 0 3 3 3 0 Sec61beta family PLDc_N PF13396.6 gi|294495500|ref|YP_003541993.1| - 7.6e-14 51.4 2.9 7.6e-14 51.4 2.9 2.0 1 1 1 2 2 2 1 Phospholipase_D-nuclease N-terminal Cation_efflux PF01545.21 gi|294495500|ref|YP_003541993.1| - 0.005 16.6 1.3 0.0055 16.4 1.3 1.0 1 0 0 1 1 1 1 Cation efflux family YbjM PF11045.8 gi|294495500|ref|YP_003541993.1| - 0.015 15.4 1.6 0.019 15.1 1.0 1.4 1 1 1 2 2 2 0 Putative inner membrane protein of Enterobacteriaceae EBP PF05241.12 gi|294495500|ref|YP_003541993.1| - 0.017 14.6 0.1 0.018 14.5 0.1 1.1 1 0 0 1 1 1 0 Emopamil binding protein PEP-CTERM PF07589.11 gi|294495500|ref|YP_003541993.1| - 1.2 9.4 3.0 1 9.6 0.7 1.9 2 0 0 2 2 2 0 PEP-CTERM motif MacB_PCD PF12704.7 gi|294495501|ref|YP_003541994.1| - 1.9e-28 100.2 1.5 1.9e-28 100.2 1.5 1.7 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|294495501|ref|YP_003541994.1| - 4.1e-13 49.6 4.3 4.1e-13 49.6 4.3 3.1 3 0 0 3 3 3 2 FtsX-like permease family CARDB PF07705.11 gi|294495502|ref|YP_003541995.1| - 0.00028 21.1 0.3 1.2 9.5 0.0 3.6 2 2 0 3 3 3 2 CARDB Cadherin-like PF12733.7 gi|294495502|ref|YP_003541995.1| - 0.0011 19.4 5.0 0.065 13.8 0.2 3.4 1 1 2 3 3 3 2 Cadherin-like beta sandwich domain ABC_tran PF00005.27 gi|294495503|ref|YP_003541996.1| - 3.5e-32 111.8 0.0 4.7e-32 111.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|294495503|ref|YP_003541996.1| - 2.2e-08 33.8 0.0 3.1e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|294495503|ref|YP_003541996.1| - 7.2e-08 32.6 0.1 0.00052 19.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|294495503|ref|YP_003541996.1| - 7.4e-05 22.4 0.1 0.00018 21.2 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|294495503|ref|YP_003541996.1| - 0.00013 21.9 0.0 0.00024 21.0 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|294495503|ref|YP_003541996.1| - 0.00025 21.3 0.1 0.0028 17.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|294495503|ref|YP_003541996.1| - 0.0019 18.6 0.0 0.0036 17.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|294495503|ref|YP_003541996.1| - 0.0051 16.9 0.1 0.024 14.7 0.0 2.0 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|294495503|ref|YP_003541996.1| - 0.0068 16.9 0.1 0.015 15.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|294495503|ref|YP_003541996.1| - 0.016 14.8 0.0 0.029 13.9 0.0 1.4 2 0 0 2 2 1 0 AAA domain IstB_IS21 PF01695.17 gi|294495503|ref|YP_003541996.1| - 0.019 14.7 0.0 0.16 11.7 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|294495503|ref|YP_003541996.1| - 0.027 14.2 0.0 0.061 13.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|294495503|ref|YP_003541996.1| - 0.032 13.6 0.1 4.6 6.5 0.0 2.2 2 0 0 2 2 2 0 KaiC AAA_28 PF13521.6 gi|294495503|ref|YP_003541996.1| - 0.034 14.4 0.0 0.049 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|294495503|ref|YP_003541996.1| - 0.045 12.9 0.0 0.055 12.6 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_18 PF13238.6 gi|294495503|ref|YP_003541996.1| - 0.047 14.2 0.0 0.082 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|294495503|ref|YP_003541996.1| - 0.075 12.7 0.0 0.22 11.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain Ploopntkinase3 PF18751.1 gi|294495503|ref|YP_003541996.1| - 0.12 12.2 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 AAA_33 PF13671.6 gi|294495503|ref|YP_003541996.1| - 0.14 12.3 0.0 0.43 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|294495503|ref|YP_003541996.1| - 0.14 12.1 0.0 0.62 9.9 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|294495503|ref|YP_003541996.1| - 0.15 11.6 0.0 0.31 10.5 0.0 1.5 2 0 0 2 2 2 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|294495503|ref|YP_003541996.1| - 0.16 12.4 0.0 0.32 11.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Cytidylate_kin PF02224.18 gi|294495503|ref|YP_003541996.1| - 0.18 11.5 0.1 0.28 10.9 0.1 1.2 1 0 0 1 1 1 0 Cytidylate kinase NB-ARC PF00931.22 gi|294495503|ref|YP_003541996.1| - 0.2 10.8 0.1 0.41 9.8 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain Lactamase_B PF00753.27 gi|294495504|ref|YP_003541997.1| - 5.8e-14 52.6 0.0 9.7e-14 51.8 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|294495504|ref|YP_003541997.1| - 2.9e-05 23.7 0.0 4.6e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|294495504|ref|YP_003541997.1| - 0.0072 16.2 0.0 0.0098 15.8 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain ThiC_Rad_SAM PF01964.18 gi|294495505|ref|YP_003541998.1| - 1.4e-183 610.4 1.0 1.6e-183 610.3 1.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family SinI PF08671.10 gi|294495505|ref|YP_003541998.1| - 0.088 12.6 0.1 8.9 6.2 0.0 3.1 3 0 0 3 3 3 0 Anti-repressor SinI Amidohydro_2 PF04909.14 gi|294495505|ref|YP_003541998.1| - 0.13 12.0 0.0 0.24 11.1 0.0 1.4 1 1 0 1 1 1 0 Amidohydrolase PAS PF00989.25 gi|294495506|ref|YP_003541999.1| - 7.6e-55 183.8 0.0 9e-17 61.1 0.0 5.5 5 0 0 5 5 5 5 PAS fold PAS_4 PF08448.10 gi|294495506|ref|YP_003541999.1| - 8e-53 177.4 0.0 5.3e-11 42.8 0.0 6.0 6 0 0 6 6 6 5 PAS fold PAS_9 PF13426.7 gi|294495506|ref|YP_003541999.1| - 6.4e-51 171.0 11.3 2.6e-13 50.1 0.1 6.0 6 0 0 6 6 6 5 PAS domain PAS_3 PF08447.12 gi|294495506|ref|YP_003541999.1| - 2e-26 92.1 3.5 5.4e-11 42.6 0.0 5.0 4 0 0 4 4 4 4 PAS fold PAS_8 PF13188.7 gi|294495506|ref|YP_003541999.1| - 3.4e-23 81.2 0.0 3.6e-07 30.1 0.0 5.5 6 0 0 6 6 6 4 PAS domain HATPase_c PF02518.26 gi|294495506|ref|YP_003541999.1| - 2.9e-20 72.8 0.0 1.5e-19 70.5 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|294495506|ref|YP_003541999.1| - 5.5e-11 42.3 0.2 1.8e-10 40.7 0.2 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.6 gi|294495506|ref|YP_003541999.1| - 6.1e-11 42.8 2.7 0.2 12.3 0.1 5.5 4 2 1 5 5 5 4 PAS domain PAS_7 PF12860.7 gi|294495506|ref|YP_003541999.1| - 4.7e-07 30.0 2.9 1.3 9.2 0.0 5.7 5 1 0 5 5 5 2 PAS fold GAF_2 PF13185.6 gi|294495506|ref|YP_003541999.1| - 0.0047 17.2 0.0 0.026 14.8 0.0 2.1 2 0 0 2 2 2 1 GAF domain HATPase_c_3 PF13589.6 gi|294495506|ref|YP_003541999.1| - 0.023 14.5 0.0 0.064 13.1 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Topoisom_bac PF01131.20 gi|294495508|ref|YP_003542001.1| - 1.7e-112 376.5 0.0 2.2e-112 376.1 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|294495508|ref|YP_003542001.1| - 2.2e-15 56.1 25.0 9.7e-12 44.5 2.5 3.7 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|294495508|ref|YP_003542001.1| - 1.4e-14 54.1 0.2 8.5e-14 51.6 0.1 2.3 2 0 0 2 2 2 1 Toprim domain Auto_anti-p27 PF06677.12 gi|294495508|ref|YP_003542001.1| - 0.041 14.0 0.1 0.041 14.0 0.1 3.1 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Toprim_4 PF13662.6 gi|294495508|ref|YP_003542001.1| - 0.048 14.1 0.1 0.13 12.7 0.1 1.7 1 0 0 1 1 1 0 Toprim domain DUF123 PF01986.16 gi|294495509|ref|YP_003542002.1| - 1.2e-32 112.2 0.0 1.6e-32 111.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 z-alpha PF02295.17 gi|294495509|ref|YP_003542002.1| - 0.096 12.7 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain Nitroreductase PF00881.24 gi|294495510|ref|YP_003542003.1| - 6.9e-33 114.1 0.2 1.1e-17 64.6 0.0 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|294495510|ref|YP_003542003.1| - 1.1e-18 67.7 0.1 3.2e-08 33.4 0.0 3.0 1 1 2 3 3 3 3 Putative TM nitroreductase IlvN PF07991.12 gi|294495511|ref|YP_003542004.1| - 5.1e-75 250.6 0.5 7e-75 250.1 0.5 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|294495511|ref|YP_003542004.1| - 1.2e-62 210.4 0.1 1.7e-62 209.9 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|294495511|ref|YP_003542004.1| - 7.8e-07 29.6 0.0 1.5e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|294495511|ref|YP_003542004.1| - 1.4e-05 25.4 0.0 2.4e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|294495511|ref|YP_003542004.1| - 1.8e-05 24.2 0.0 4.1e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|294495511|ref|YP_003542004.1| - 0.00019 21.6 0.0 0.00032 20.8 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|294495511|ref|YP_003542004.1| - 0.029 14.0 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ALS_ss_C PF10369.9 gi|294495512|ref|YP_003542005.1| - 1e-31 108.9 4.1 1.1e-31 108.9 2.5 1.8 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|294495512|ref|YP_003542005.1| - 1e-17 63.7 1.8 1.9e-17 62.8 0.2 2.2 2 1 0 2 2 2 1 ACT domain ACT PF01842.25 gi|294495512|ref|YP_003542005.1| - 1.4e-16 59.9 3.9 2.2e-16 59.3 0.2 2.5 2 1 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|294495512|ref|YP_003542005.1| - 0.00082 19.9 0.4 0.00082 19.9 0.4 1.8 2 0 0 2 2 2 1 ACT domain SLS PF14611.6 gi|294495512|ref|YP_003542005.1| - 0.15 11.8 2.3 0.63 9.8 2.5 1.7 1 1 0 1 1 1 0 Mitochondrial inner-membrane-bound regulator TPP_enzyme_N PF02776.18 gi|294495513|ref|YP_003542006.1| - 4.5e-60 202.2 0.1 1.4e-58 197.3 0.1 2.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|294495513|ref|YP_003542006.1| - 1.9e-56 190.1 0.2 3.1e-55 186.2 0.2 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|294495513|ref|YP_003542006.1| - 1.6e-50 170.4 0.0 3.3e-50 169.4 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 gi|294495513|ref|YP_003542006.1| - 0.02 14.6 2.1 0.023 14.5 0.7 1.9 2 1 0 2 2 2 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg XFP_N PF09364.10 gi|294495513|ref|YP_003542006.1| - 0.08 11.7 0.0 0.17 10.6 0.0 1.5 1 0 0 1 1 1 0 XFP N-terminal domain E1_dh PF00676.20 gi|294495513|ref|YP_003542006.1| - 2.2 7.2 4.0 1.1 8.1 0.8 2.2 2 1 0 2 2 2 0 Dehydrogenase E1 component HMGL-like PF00682.19 gi|294495514|ref|YP_003542007.1| - 2.1e-61 207.8 0.3 4.1e-61 206.9 0.3 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|294495514|ref|YP_003542007.1| - 5.1e-38 130.0 3.0 8.5e-38 129.3 3.0 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Peptidase_M42 PF05343.14 gi|294495515|ref|YP_003542008.1| - 1.5e-112 375.4 2.8 1.9e-112 375.0 2.8 1.1 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|294495515|ref|YP_003542008.1| - 1.3e-10 41.4 0.1 2.1e-10 40.6 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 IMS PF00817.20 gi|294495516|ref|YP_003542009.1| - 6.6e-50 169.0 0.0 1.2e-49 168.2 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 gi|294495516|ref|YP_003542009.1| - 3.5e-18 66.4 0.1 1.4e-17 64.5 0.2 1.9 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|294495516|ref|YP_003542009.1| - 2.1e-06 27.7 0.0 5.9e-06 26.3 0.0 1.8 1 0 0 1 1 1 1 IMS family HHH motif Cdd1 PF11731.8 gi|294495516|ref|YP_003542009.1| - 0.025 14.8 0.1 0.28 11.4 0.0 2.5 2 0 0 2 2 2 0 Pathogenicity locus DUF4332 PF14229.6 gi|294495516|ref|YP_003542009.1| - 0.11 12.8 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) DUF1624 PF07786.12 gi|294495517|ref|YP_003542010.1| - 4.4e-64 216.1 12.4 5.1e-64 215.9 12.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.22 gi|294495517|ref|YP_003542010.1| - 2.3e-08 33.5 20.5 0.00014 21.0 12.2 2.1 1 1 1 2 2 2 2 Acyltransferase family DUF418 PF04235.12 gi|294495517|ref|YP_003542010.1| - 0.0047 16.9 2.7 0.0047 16.9 2.7 2.3 1 1 2 3 3 3 1 Protein of unknown function (DUF418) DUF4199 PF13858.6 gi|294495517|ref|YP_003542010.1| - 0.03 14.7 1.9 0.03 14.7 1.9 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF4199) DUF2072 PF09845.9 gi|294495518|ref|YP_003542011.1| - 9.6e-46 155.3 1.5 1.2e-45 155.1 1.5 1.1 1 0 0 1 1 1 1 Zn-ribbon containing protein Zn-ribbon_8 PF09723.10 gi|294495518|ref|YP_003542011.1| - 0.055 13.6 1.3 0.13 12.4 1.3 1.6 1 0 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|294495518|ref|YP_003542011.1| - 0.067 12.7 1.5 11 5.7 0.1 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding Spt4 PF06093.13 gi|294495518|ref|YP_003542011.1| - 0.088 12.9 1.2 0.28 11.3 0.4 2.1 2 1 0 2 2 2 0 Spt4/RpoE2 zinc finger zf-ribbon_3 PF13248.6 gi|294495518|ref|YP_003542011.1| - 1.1 8.7 4.9 1.2 8.6 0.9 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PNP_UDP_1 PF01048.20 gi|294495519|ref|YP_003542012.1| - 1.5e-44 152.0 0.0 1.8e-44 151.8 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily RICTOR_M PF14666.6 gi|294495519|ref|YP_003542012.1| - 0.021 14.6 0.1 0.036 13.8 0.1 1.4 1 0 0 1 1 1 0 Rapamycin-insensitive companion of mTOR, middle domain Pribosyltran PF00156.27 gi|294495520|ref|YP_003542013.1| - 2e-17 63.1 0.0 2.8e-17 62.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain EamA PF00892.20 gi|294495521|ref|YP_003542014.1| - 1.4e-20 73.9 40.9 1.6e-10 41.3 16.9 2.1 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|294495521|ref|YP_003542014.1| - 0.063 13.3 8.2 0.12 12.5 0.4 2.9 2 1 1 3 3 3 0 Putative transmembrane family 234 SRP54 PF00448.22 gi|294495522|ref|YP_003542015.1| - 3.9e-68 228.9 0.1 6.3e-68 228.3 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|294495522|ref|YP_003542015.1| - 4.5e-26 91.4 7.1 4.5e-26 91.4 7.1 2.5 3 0 0 3 3 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|294495522|ref|YP_003542015.1| - 2.5e-21 75.7 0.9 1e-20 73.7 0.9 2.2 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|294495522|ref|YP_003542015.1| - 2.2e-05 24.5 0.0 8.7e-05 22.6 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain 6PF2K PF01591.18 gi|294495522|ref|YP_003542015.1| - 0.0011 18.3 0.0 0.0025 17.2 0.0 1.6 1 0 0 1 1 1 1 6-phosphofructo-2-kinase Zeta_toxin PF06414.12 gi|294495522|ref|YP_003542015.1| - 0.0025 17.1 0.0 0.0048 16.2 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_24 PF13479.6 gi|294495522|ref|YP_003542015.1| - 0.005 16.6 0.0 0.015 15.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|294495522|ref|YP_003542015.1| - 0.0081 15.9 0.1 0.026 14.2 0.0 1.9 2 0 0 2 2 2 1 Thymidylate kinase ATP_bind_1 PF03029.17 gi|294495522|ref|YP_003542015.1| - 0.011 15.5 0.3 0.035 13.9 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MeaB PF03308.16 gi|294495522|ref|YP_003542015.1| - 0.012 14.6 0.0 0.046 12.7 0.0 2.0 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 gi|294495522|ref|YP_003542015.1| - 0.013 15.6 0.0 0.024 14.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|294495522|ref|YP_003542015.1| - 0.014 15.2 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_19 PF13245.6 gi|294495522|ref|YP_003542015.1| - 0.021 15.1 0.1 0.034 14.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|294495522|ref|YP_003542015.1| - 0.023 15.0 0.0 0.064 13.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|294495522|ref|YP_003542015.1| - 0.027 14.1 0.2 0.28 10.7 0.2 2.2 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain LpxK PF02606.14 gi|294495522|ref|YP_003542015.1| - 0.031 13.4 0.1 0.054 12.6 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase MobB PF03205.14 gi|294495522|ref|YP_003542015.1| - 0.035 14.0 0.1 0.075 12.9 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.6 gi|294495522|ref|YP_003542015.1| - 0.039 14.2 0.0 0.074 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|294495522|ref|YP_003542015.1| - 0.039 12.9 0.0 0.077 11.9 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain PduV-EutP PF10662.9 gi|294495522|ref|YP_003542015.1| - 0.042 13.6 0.3 0.12 12.1 0.3 1.8 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.23 gi|294495522|ref|YP_003542015.1| - 0.048 13.7 0.2 0.41 10.7 0.2 2.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_5 PF07728.14 gi|294495522|ref|YP_003542015.1| - 0.056 13.4 0.9 1.3 9.0 0.1 2.9 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) G-alpha PF00503.20 gi|294495522|ref|YP_003542015.1| - 0.071 12.3 0.0 0.11 11.6 0.0 1.5 1 1 0 1 1 1 0 G-protein alpha subunit AAA_16 PF13191.6 gi|294495522|ref|YP_003542015.1| - 0.071 13.5 0.1 0.19 12.1 0.0 1.7 2 0 0 2 2 1 0 AAA ATPase domain ResIII PF04851.15 gi|294495522|ref|YP_003542015.1| - 0.075 13.0 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit KTI12 PF08433.10 gi|294495522|ref|YP_003542015.1| - 0.083 12.3 0.0 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|294495522|ref|YP_003542015.1| - 0.14 12.7 0.1 0.46 11.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain Spectrin PF00435.21 gi|294495522|ref|YP_003542015.1| - 1.8 9.1 3.8 23 5.5 0.0 3.1 4 0 0 4 4 2 0 Spectrin repeat Rib_5-P_isom_A PF06026.14 gi|294495523|ref|YP_003542016.1| - 1e-59 201.0 0.2 1.3e-59 200.7 0.2 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|294495523|ref|YP_003542016.1| - 2.5e-07 30.8 1.2 1.3e-05 25.1 0.1 2.2 1 1 0 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|294495523|ref|YP_003542016.1| - 0.022 13.9 0.1 0.033 13.3 0.1 1.3 1 0 0 1 1 1 0 Putative sugar-binding domain DsrD PF08679.11 gi|294495523|ref|YP_003542016.1| - 0.054 13.7 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 Dissimilatory sulfite reductase D (DsrD) tRNA-synt_2 PF00152.20 gi|294495524|ref|YP_003542017.1| - 4.4e-92 308.5 0.1 5.3e-92 308.2 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|294495524|ref|YP_003542017.1| - 6e-14 51.8 0.1 1e-13 51.0 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|294495524|ref|YP_003542017.1| - 0.00014 21.4 0.4 0.0095 15.4 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) Med30 PF11315.8 gi|294495524|ref|YP_003542017.1| - 0.028 14.6 0.0 0.058 13.6 0.0 1.5 1 0 0 1 1 1 0 Mediator complex subunit 30 DNA_gyraseB PF00204.25 gi|294495525|ref|YP_003542018.1| - 3e-62 209.1 0.1 4.6e-62 208.6 0.1 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|294495525|ref|YP_003542018.1| - 3.8e-32 110.3 0.2 7.8e-32 109.3 0.2 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|294495525|ref|YP_003542018.1| - 8.1e-22 77.9 0.3 1.9e-21 76.6 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|294495525|ref|YP_003542018.1| - 2.7e-15 56.4 0.0 6.4e-15 55.2 0.0 1.7 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 gi|294495525|ref|YP_003542018.1| - 0.00038 20.3 0.1 0.00093 19.0 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GMC_oxred_C PF05199.13 gi|294495525|ref|YP_003542018.1| - 0.033 14.7 0.0 0.17 12.4 0.0 2.1 2 0 0 2 2 2 0 GMC oxidoreductase DNA_topoisoIV PF00521.20 gi|294495526|ref|YP_003542019.1| - 5.5e-155 516.4 0.2 7.6e-155 516.0 0.2 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|294495526|ref|YP_003542019.1| - 4.3e-77 253.4 14.4 2.6e-15 55.6 0.7 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller tRNA_NucTran2_2 PF13735.6 gi|294495526|ref|YP_003542019.1| - 0.14 12.2 0.4 0.31 11.0 0.1 1.7 2 0 0 2 2 2 0 tRNA nucleotidyltransferase domain 2 putative SSF PF00474.17 gi|294495527|ref|YP_003542020.1| - 3.5e-59 200.7 38.9 3.5e-59 200.7 38.9 1.8 3 0 0 3 3 3 1 Sodium:solute symporter family DUF378 PF04070.12 gi|294495528|ref|YP_003542021.1| - 0.051 13.5 1.4 0.064 13.1 1.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF378) SOR_SNZ PF01680.17 gi|294495529|ref|YP_003542022.1| - 6e-103 343.0 8.7 8.3e-103 342.6 8.7 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|294495529|ref|YP_003542022.1| - 4.7e-12 45.7 6.6 6.2e-08 32.2 0.9 2.3 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|294495529|ref|YP_003542022.1| - 9.4e-05 21.6 0.6 0.055 12.5 0.1 2.5 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|294495529|ref|YP_003542022.1| - 0.0021 17.3 1.7 0.043 13.0 0.0 2.8 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 gi|294495529|ref|YP_003542022.1| - 0.0022 17.4 5.6 0.0055 16.1 0.1 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase IGPS PF00218.21 gi|294495529|ref|YP_003542022.1| - 0.013 14.7 0.1 0.33 10.1 0.0 2.2 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase MttA_Hcf106 PF02416.16 gi|294495529|ref|YP_003542022.1| - 0.04 13.2 0.5 1.1 8.6 0.0 2.4 2 0 0 2 2 2 0 mttA/Hcf106 family TetR_C_27 PF17935.1 gi|294495529|ref|YP_003542022.1| - 0.048 13.7 0.0 0.16 12.0 0.0 1.8 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DUF2795 PF11387.8 gi|294495529|ref|YP_003542022.1| - 0.06 13.6 0.1 0.24 11.6 0.1 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2795) DUF561 PF04481.12 gi|294495529|ref|YP_003542022.1| - 0.11 11.6 0.4 1.9 7.6 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF561) ThiI PF02568.14 gi|294495529|ref|YP_003542022.1| - 0.14 11.8 0.1 18 4.9 0.0 2.3 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) SNO PF01174.19 gi|294495530|ref|YP_003542023.1| - 5.1e-53 179.7 0.0 5.7e-53 179.6 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|294495530|ref|YP_003542023.1| - 1.8e-10 40.7 0.0 2.5e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|294495530|ref|YP_003542023.1| - 1.1e-07 31.9 0.0 2.8e-07 30.5 0.0 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.17 gi|294495530|ref|YP_003542023.1| - 3.6e-06 26.8 0.0 4.8e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 Peptidase_C26 PF07722.13 gi|294495530|ref|YP_003542023.1| - 0.02 14.6 0.2 0.16 11.7 0.3 2.4 2 1 0 2 2 2 0 Peptidase C26 DJ-1_PfpI PF01965.24 gi|294495530|ref|YP_003542023.1| - 0.13 12.1 0.1 0.23 11.3 0.1 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family Putative_PNPOx PF01243.20 gi|294495531|ref|YP_003542024.1| - 6.3e-16 58.3 0.0 7.7e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|294495531|ref|YP_003542024.1| - 0.0005 19.7 0.0 0.00061 19.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like DUF1724 PF08350.10 gi|294495532|ref|YP_003542025.1| - 1.8e-15 56.8 0.4 4.1e-15 55.7 0.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_45 PF14947.6 gi|294495532|ref|YP_003542025.1| - 0.0003 20.7 0.7 0.00089 19.2 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_5 PF01022.20 gi|294495532|ref|YP_003542025.1| - 0.0005 19.9 0.2 0.00091 19.1 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HemN_C PF06969.16 gi|294495532|ref|YP_003542025.1| - 0.031 14.3 0.0 0.052 13.6 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain HxlR PF01638.17 gi|294495532|ref|YP_003542025.1| - 0.06 13.2 0.3 0.18 11.7 0.3 1.8 1 1 0 1 1 1 0 HxlR-like helix-turn-helix DUF4389 PF14333.6 gi|294495533|ref|YP_003542026.1| - 3.1e-21 75.1 2.0 4.2e-21 74.7 2.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4389) GIIM PF08388.11 gi|294495533|ref|YP_003542026.1| - 0.003 17.6 0.2 0.006 16.6 0.1 1.5 2 0 0 2 2 2 1 Group II intron, maturase-specific domain Ribosomal_S6e PF01092.19 gi|294495534|ref|YP_003542027.1| - 6.4e-43 145.7 0.3 7.2e-43 145.5 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e GTP_EFTU PF00009.27 gi|294495535|ref|YP_003542028.1| - 3.2e-34 118.2 0.0 1.5e-33 116.0 0.0 2.1 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|294495535|ref|YP_003542028.1| - 3.1e-27 94.3 0.8 3.1e-27 94.3 0.8 2.4 2 1 1 3 3 3 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|294495535|ref|YP_003542028.1| - 1.5e-23 82.9 1.6 4.3e-23 81.4 1.6 1.8 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|294495535|ref|YP_003542028.1| - 9.3e-15 54.8 12.9 6.3e-11 42.5 0.2 3.2 3 0 0 3 3 3 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|294495535|ref|YP_003542028.1| - 6.1e-09 36.0 0.5 3.1e-08 33.7 0.0 2.4 3 0 0 3 3 3 1 50S ribosome-binding GTPase cobW PF02492.19 gi|294495535|ref|YP_003542028.1| - 0.0024 17.5 0.3 3.9 7.0 0.0 3.3 2 1 1 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.17 gi|294495535|ref|YP_003542028.1| - 0.0064 16.3 0.0 0.036 13.8 0.0 2.1 2 1 0 3 3 3 1 Conserved hypothetical ATP binding protein PduV-EutP PF10662.9 gi|294495535|ref|YP_003542028.1| - 0.011 15.4 0.2 0.16 11.7 0.0 2.8 4 0 0 4 4 4 0 Ethanolamine utilisation - propanediol utilisation Roc PF08477.13 gi|294495535|ref|YP_003542028.1| - 0.015 15.5 0.0 0.058 13.6 0.0 2.1 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 gi|294495535|ref|YP_003542028.1| - 0.038 14.1 0.1 1.2 9.2 0.0 2.8 3 0 0 3 3 3 0 Dynamin family RsgA_GTPase PF03193.16 gi|294495535|ref|YP_003542028.1| - 0.11 12.4 0.5 4.5 7.2 0.1 3.1 2 1 1 3 3 3 0 RsgA GTPase Arf PF00025.21 gi|294495535|ref|YP_003542028.1| - 0.14 11.6 0.0 3.6 7.0 0.0 2.8 2 1 0 2 2 2 0 ADP-ribosylation factor family NDK PF00334.19 gi|294495536|ref|YP_003542029.1| - 2.1e-55 186.4 0.1 2.4e-55 186.2 0.1 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_S28e PF01200.18 gi|294495537|ref|YP_003542030.1| - 2.1e-29 101.3 0.3 2.3e-29 101.1 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|294495538|ref|YP_003542031.1| - 1.9e-24 85.2 2.1 2.3e-24 85.0 2.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|294495538|ref|YP_003542031.1| - 0.00097 19.0 0.0 0.0014 18.4 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain YtxH PF12732.7 gi|294495538|ref|YP_003542031.1| - 0.0029 18.1 5.8 0.24 12.0 0.8 2.1 2 0 0 2 2 2 2 YtxH-like protein Hydrolase PF00702.26 gi|294495538|ref|YP_003542031.1| - 0.018 15.3 0.8 0.021 15.1 0.8 1.1 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF1269 PF06897.12 gi|294495538|ref|YP_003542031.1| - 0.34 11.2 2.6 7.7 6.9 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) DDE_Tnp_1 PF01609.21 gi|294495540|ref|YP_003542033.1| - 3.4e-19 69.4 3.3 4.9e-19 68.8 3.3 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|294495540|ref|YP_003542033.1| - 9.8e-05 22.7 1.5 0.00025 21.3 1.5 1.7 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|294495540|ref|YP_003542033.1| - 0.011 15.7 0.1 0.025 14.6 0.1 1.6 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_4 PF13359.6 gi|294495540|ref|YP_003542033.1| - 0.028 14.1 0.4 0.045 13.4 0.4 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease Cas1_AcylT PF07779.12 gi|294495541|ref|YP_003542034.1| - 0.023 13.6 0.0 0.023 13.6 0.0 1.0 1 0 0 1 1 1 0 10 TM Acyl Transferase domain found in Cas1p ZYG-11_interact PF05884.12 gi|294495541|ref|YP_003542034.1| - 0.053 12.9 0.0 0.055 12.9 0.0 1.0 1 0 0 1 1 1 0 Interactor of ZYG-11 NYD-SP28_assoc PF14775.6 gi|294495541|ref|YP_003542034.1| - 0.11 12.6 1.2 0.15 12.2 1.2 1.1 1 0 0 1 1 1 0 Sperm tail C-terminal domain SPICE PF15678.5 gi|294495541|ref|YP_003542034.1| - 0.22 10.9 0.1 0.21 10.9 0.1 1.0 1 0 0 1 1 1 0 Centriole duplication and mitotic chromosome congression PAS_3 PF08447.12 gi|294495543|ref|YP_003542036.1| - 2.1e-56 188.2 9.5 8.4e-19 67.7 0.2 4.7 4 0 0 4 4 4 4 PAS fold GAF_2 PF13185.6 gi|294495543|ref|YP_003542036.1| - 1.7e-31 109.4 0.0 1.1e-16 61.4 0.0 2.4 2 0 0 2 2 2 2 GAF domain PAS PF00989.25 gi|294495543|ref|YP_003542036.1| - 7.8e-25 87.1 2.6 6.7e-06 26.1 0.1 4.5 4 0 0 4 4 4 4 PAS fold PAS_4 PF08448.10 gi|294495543|ref|YP_003542036.1| - 2.6e-22 79.2 0.0 1e-05 25.7 0.0 5.4 6 0 0 6 6 5 4 PAS fold PAS_9 PF13426.7 gi|294495543|ref|YP_003542036.1| - 8.2e-17 61.4 6.6 5.1e-06 26.7 0.0 4.5 4 0 0 4 4 4 3 PAS domain GAF_3 PF13492.6 gi|294495543|ref|YP_003542036.1| - 1.9e-16 60.6 0.0 4.1e-08 33.6 0.0 2.4 2 0 0 2 2 2 2 GAF domain GAF PF01590.26 gi|294495543|ref|YP_003542036.1| - 3.2e-06 27.8 0.0 0.014 16.0 0.0 2.4 2 0 0 2 2 2 2 GAF domain PAS_11 PF14598.6 gi|294495543|ref|YP_003542036.1| - 3.2e-06 27.2 0.4 5.1 7.3 0.0 4.8 4 1 0 5 5 5 3 PAS domain LicD PF04991.13 gi|294495543|ref|YP_003542036.1| - 0.0036 17.5 8.8 0.16 12.1 0.1 3.4 4 0 0 4 4 4 2 LicD family PAS_7 PF12860.7 gi|294495543|ref|YP_003542036.1| - 0.009 16.2 0.6 2.9 8.1 0.0 3.5 3 0 0 3 3 3 1 PAS fold DUF4265 PF14085.6 gi|294495543|ref|YP_003542036.1| - 0.013 15.4 0.0 4.7 7.2 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4265) PAS_8 PF13188.7 gi|294495543|ref|YP_003542036.1| - 0.068 13.2 0.0 2.7 8.1 0.0 3.0 2 0 0 2 2 2 0 PAS domain DUF1525 PF07511.11 gi|294495543|ref|YP_003542036.1| - 0.11 12.6 0.2 26 5.0 0.0 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1525) FGGY_N PF00370.21 gi|294495543|ref|YP_003542036.1| - 0.12 12.0 0.7 0.89 9.1 0.1 2.2 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, N-terminal domain FliH PF02108.16 gi|294495543|ref|YP_003542036.1| - 0.15 12.1 2.6 15 5.7 0.0 4.2 5 0 0 5 5 5 0 Flagellar assembly protein FliH UDG PF03167.19 gi|294495544|ref|YP_003542037.1| - 8.8e-10 38.8 0.0 1.1e-09 38.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily TPR_2 PF07719.17 gi|294495545|ref|YP_003542038.1| - 7.5e-35 116.2 7.2 1.1e-05 25.2 0.0 6.4 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_1 PF00515.28 gi|294495545|ref|YP_003542038.1| - 2.7e-32 109.3 12.1 1.1e-06 28.2 0.0 6.5 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|294495545|ref|YP_003542038.1| - 7.4e-25 86.4 4.7 2.2e-08 33.6 0.0 6.5 3 2 3 6 6 6 4 TPR repeat TPR_8 PF13181.6 gi|294495545|ref|YP_003542038.1| - 9.9e-22 75.3 6.3 3.4e-05 23.7 0.0 6.4 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|294495545|ref|YP_003542038.1| - 1.2e-21 77.0 5.7 4.8e-10 39.8 0.1 4.1 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|294495545|ref|YP_003542038.1| - 6.8e-20 70.1 0.7 0.0013 19.4 0.0 6.2 3 2 3 6 6 6 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|294495545|ref|YP_003542038.1| - 7.9e-20 70.9 2.8 3.1e-05 24.2 0.0 5.4 4 2 0 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|294495545|ref|YP_003542038.1| - 3e-18 66.2 0.0 0.0098 16.5 0.0 4.9 4 1 0 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|294495545|ref|YP_003542038.1| - 1.8e-16 59.3 3.1 0.00011 22.3 0.1 6.7 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|294495545|ref|YP_003542038.1| - 2.5e-14 53.2 0.1 9e-06 25.7 0.0 4.3 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|294495545|ref|YP_003542038.1| - 8e-14 51.3 0.2 0.66 10.7 0.0 6.3 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|294495545|ref|YP_003542038.1| - 6.6e-12 44.6 1.6 0.18 11.9 0.0 6.2 6 0 0 6 6 6 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|294495545|ref|YP_003542038.1| - 3.1e-11 43.3 5.3 0.099 12.9 0.0 4.4 3 2 1 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.6 gi|294495545|ref|YP_003542038.1| - 3.9e-11 42.8 3.4 0.0049 16.9 0.1 5.3 5 1 1 6 6 6 2 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 gi|294495545|ref|YP_003542038.1| - 2.6e-09 36.5 0.9 0.0032 16.5 0.0 4.4 2 2 2 4 4 4 3 NMDA receptor-regulated protein 1 TPR_3 PF07720.12 gi|294495545|ref|YP_003542038.1| - 4.2e-08 33.0 6.6 0.11 12.5 0.3 5.6 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_15 PF13429.6 gi|294495545|ref|YP_003542038.1| - 8.5e-06 25.2 0.6 0.24 10.6 0.0 3.7 1 1 2 4 4 4 1 Tetratricopeptide repeat BTAD PF03704.17 gi|294495545|ref|YP_003542038.1| - 9.5e-06 26.1 0.0 0.14 12.6 0.0 3.1 2 1 0 3 3 3 1 Bacterial transcriptional activator domain TPR_10 PF13374.6 gi|294495545|ref|YP_003542038.1| - 1.1e-05 25.2 3.0 3.6 7.6 0.1 5.7 6 0 0 6 6 6 1 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|294495545|ref|YP_003542038.1| - 1.6e-05 24.9 4.1 0.0013 18.7 0.6 3.3 1 1 3 4 4 4 1 Putative TPR-like repeat Coatomer_E PF04733.14 gi|294495545|ref|YP_003542038.1| - 0.0011 18.5 0.1 1.3 8.4 0.0 2.8 2 1 0 2 2 2 2 Coatomer epsilon subunit MIT PF04212.18 gi|294495545|ref|YP_003542038.1| - 0.0024 17.9 4.0 0.85 9.7 0.2 4.5 5 0 0 5 5 5 1 MIT (microtubule interacting and transport) domain FliS PF02561.14 gi|294495545|ref|YP_003542038.1| - 0.016 15.5 0.1 0.33 11.3 0.0 2.5 3 0 0 3 3 2 0 Flagellar protein FliS TPR_20 PF14561.6 gi|294495545|ref|YP_003542038.1| - 0.017 15.5 0.3 6.2 7.2 0.0 3.5 3 1 1 4 4 4 0 Tetratricopeptide repeat PPR PF01535.20 gi|294495545|ref|YP_003542038.1| - 0.021 15.0 3.5 6.6 7.2 0.0 4.7 6 0 0 6 6 4 0 PPR repeat SRP68 PF16969.5 gi|294495545|ref|YP_003542038.1| - 0.028 13.5 0.1 0.09 11.8 0.0 1.8 2 0 0 2 2 2 0 RNA-binding signal recognition particle 68 NRBF2_MIT PF17169.4 gi|294495545|ref|YP_003542038.1| - 0.087 13.1 0.1 16 5.8 0.0 3.7 4 1 1 5 5 4 0 MIT domain of nuclear receptor-binding factor 2 Sec5 PF15469.6 gi|294495545|ref|YP_003542038.1| - 0.11 12.3 0.4 1.5 8.6 0.1 2.2 2 0 0 2 2 2 0 Exocyst complex component Sec5 RPN7 PF10602.9 gi|294495545|ref|YP_003542038.1| - 0.22 11.2 1.5 15 5.2 0.0 3.6 3 1 1 4 4 4 0 26S proteasome subunit RPN7 dCMP_cyt_deam_1 PF00383.23 gi|294495546|ref|YP_003542039.1| - 8.2e-22 77.0 0.0 1.2e-21 76.4 0.0 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|294495546|ref|YP_003542039.1| - 1.4e-19 70.2 0.0 1.7e-19 69.9 0.0 1.2 1 0 0 1 1 1 1 MafB19-like deaminase APOBEC3 PF18771.1 gi|294495546|ref|YP_003542039.1| - 0.0071 16.5 0.1 0.0089 16.2 0.1 1.3 1 1 0 1 1 1 1 APOBEC3 SNAD4 PF18750.1 gi|294495546|ref|YP_003542039.1| - 0.037 14.1 0.0 0.057 13.5 0.0 1.3 1 0 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 4 DUF447 PF04289.12 gi|294495547|ref|YP_003542040.1| - 5.9e-48 163.0 0.1 6.8e-48 162.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) CitG PF01874.16 gi|294495548|ref|YP_003542041.1| - 6.3e-77 259.0 0.0 7e-77 258.8 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase ACP_syn_III_C PF08541.10 gi|294495548|ref|YP_003542041.1| - 0.14 12.3 0.0 0.48 10.6 0.0 1.8 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Dus PF01207.17 gi|294495549|ref|YP_003542042.1| - 3.3e-15 56.0 0.1 5.4e-15 55.3 0.1 1.3 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|294495549|ref|YP_003542042.1| - 1.7e-09 37.5 0.2 8.9e-09 35.1 0.1 1.9 1 1 1 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|294495549|ref|YP_003542042.1| - 0.00012 21.2 0.8 0.00017 20.7 0.8 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|294495549|ref|YP_003542042.1| - 0.0029 16.8 0.2 0.0045 16.2 0.2 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase Fer4_14 PF13394.6 gi|294495549|ref|YP_003542042.1| - 0.034 14.3 0.0 2.6 8.2 0.0 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain DHO_dh PF01180.21 gi|294495549|ref|YP_003542042.1| - 0.1 11.8 0.5 1 8.5 0.0 2.5 3 1 1 4 4 4 0 Dihydroorotate dehydrogenase Ribul_P_3_epim PF00834.19 gi|294495549|ref|YP_003542042.1| - 0.14 11.5 0.2 0.96 8.8 0.2 2.1 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family PhoU PF01895.19 gi|294495550|ref|YP_003542043.1| - 1.9e-37 127.6 14.9 2.4e-22 79.2 5.2 2.1 2 0 0 2 2 2 2 PhoU domain SHE3 PF17078.5 gi|294495550|ref|YP_003542043.1| - 0.0024 17.7 5.8 0.0054 16.5 5.8 1.7 1 1 0 1 1 1 1 SWI5-dependent HO expression protein 3 DUF5344 PF17279.2 gi|294495550|ref|YP_003542043.1| - 0.033 14.8 4.3 3.6 8.2 0.1 2.7 2 1 0 2 2 2 0 Family of unknown function (DUF5344) Baculo_PEP_C PF04513.12 gi|294495550|ref|YP_003542043.1| - 0.036 14.1 2.1 0.069 13.2 0.6 2.1 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Lectin_N PF03954.14 gi|294495550|ref|YP_003542043.1| - 0.07 12.9 0.5 0.12 12.2 0.5 1.3 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain Fib_alpha PF08702.10 gi|294495550|ref|YP_003542043.1| - 0.071 13.3 8.5 0.11 12.6 3.9 2.3 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family ApoLp-III PF07464.11 gi|294495550|ref|YP_003542043.1| - 0.073 13.2 5.5 0.19 11.8 1.5 2.1 1 1 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Catalase-rel PF06628.12 gi|294495550|ref|YP_003542043.1| - 0.08 13.2 0.1 0.95 9.7 0.1 2.5 2 0 0 2 2 2 0 Catalase-related immune-responsive Phage_TAC_4 PF08748.11 gi|294495550|ref|YP_003542043.1| - 0.41 11.0 4.2 1.4 9.2 0.1 2.2 1 1 1 2 2 2 0 Phage tail assembly chaperone Spc7 PF08317.11 gi|294495550|ref|YP_003542043.1| - 1.4 7.7 8.3 0.41 9.5 3.5 1.9 1 1 1 2 2 2 0 Spc7 kinetochore protein Troponin PF00992.20 gi|294495550|ref|YP_003542043.1| - 2.9 8.2 7.1 1.9 8.8 3.6 2.0 1 1 0 2 2 2 0 Troponin APG6_N PF17675.1 gi|294495550|ref|YP_003542043.1| - 3.5 8.2 7.1 1.4 9.5 2.8 2.0 2 0 0 2 2 2 0 Apg6 coiled-coil region FadA PF09403.10 gi|294495550|ref|YP_003542043.1| - 4.5 7.8 8.7 5 7.7 3.3 2.6 2 1 0 2 2 2 0 Adhesion protein FadA DUF1664 PF07889.12 gi|294495550|ref|YP_003542043.1| - 5.2 7.1 7.4 1.8 8.6 2.3 2.4 1 1 1 3 3 3 0 Protein of unknown function (DUF1664) ABC_tran PF00005.27 gi|294495551|ref|YP_003542044.1| - 2.3e-30 105.9 0.0 3.2e-30 105.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|294495551|ref|YP_003542044.1| - 4.7e-11 43.0 0.0 0.00023 21.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|294495551|ref|YP_003542044.1| - 5e-08 32.7 0.7 2.8e-06 26.9 0.7 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|294495551|ref|YP_003542044.1| - 1.7e-06 28.0 0.1 6.6e-06 26.1 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|294495551|ref|YP_003542044.1| - 0.00015 22.3 0.0 0.0004 20.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|294495551|ref|YP_003542044.1| - 0.00025 21.0 0.0 0.00049 20.0 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|294495551|ref|YP_003542044.1| - 0.00065 19.4 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|294495551|ref|YP_003542044.1| - 0.0045 17.3 0.0 0.0061 16.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|294495551|ref|YP_003542044.1| - 0.0055 17.1 0.0 0.0078 16.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|294495551|ref|YP_003542044.1| - 0.023 14.6 0.0 0.042 13.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_25 PF13481.6 gi|294495551|ref|YP_003542044.1| - 0.025 14.2 0.0 0.062 12.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|294495551|ref|YP_003542044.1| - 0.032 14.7 0.0 0.65 10.4 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 gi|294495551|ref|YP_003542044.1| - 0.048 13.4 0.0 0.11 12.2 0.0 1.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|294495551|ref|YP_003542044.1| - 0.076 13.2 0.0 0.11 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|294495551|ref|YP_003542044.1| - 0.11 12.1 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|294495551|ref|YP_003542044.1| - 0.11 12.2 0.1 0.22 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|294495551|ref|YP_003542044.1| - 0.12 12.9 0.0 0.26 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|294495551|ref|YP_003542044.1| - 0.14 11.3 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|294495551|ref|YP_003542044.1| - 0.16 11.9 0.0 0.37 10.7 0.0 1.5 2 0 0 2 2 2 0 NACHT domain BPD_transp_1 PF00528.22 gi|294495552|ref|YP_003542045.1| - 3.4e-26 92.1 11.3 3.4e-26 92.1 11.3 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component FtsL PF04999.13 gi|294495552|ref|YP_003542045.1| - 0.0093 15.9 0.8 3.2 7.8 0.0 2.6 2 0 0 2 2 2 2 Cell division protein FtsL BPD_transp_1 PF00528.22 gi|294495553|ref|YP_003542046.1| - 3.3e-22 79.1 14.5 3.3e-22 79.1 14.5 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF1295 PF06966.12 gi|294495553|ref|YP_003542046.1| - 0.028 13.9 0.2 0.13 11.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1295) PBP_like_2 PF12849.7 gi|294495554|ref|YP_003542047.1| - 1e-44 153.3 3.0 2.6e-44 152.0 3.0 1.6 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|294495554|ref|YP_003542047.1| - 1.3e-23 83.1 0.3 1.9e-23 82.6 0.3 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|294495554|ref|YP_003542047.1| - 1.5e-11 44.5 0.0 1.8e-11 44.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|294495554|ref|YP_003542047.1| - 0.022 14.6 0.0 0.34 10.7 0.0 2.1 1 1 0 2 2 2 0 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|294495554|ref|YP_003542047.1| - 0.092 12.1 0.0 0.29 10.5 0.0 1.7 2 0 0 2 2 2 0 LysR substrate binding domain PBP_like_2 PF12849.7 gi|294495555|ref|YP_003542048.1| - 8.2e-44 150.4 1.0 2.4e-43 148.8 1.0 1.6 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|294495555|ref|YP_003542048.1| - 7.9e-20 70.8 0.0 1.1e-19 70.3 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|294495555|ref|YP_003542048.1| - 5.8e-06 26.2 0.0 7.5e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|294495555|ref|YP_003542048.1| - 0.013 14.9 0.0 0.071 12.5 0.0 1.9 2 0 0 2 2 2 0 LysR substrate binding domain Amidohydro_1 PF01979.20 gi|294495557|ref|YP_003542050.1| - 3.9e-20 72.5 0.0 1.6e-19 70.4 0.0 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|294495557|ref|YP_003542050.1| - 2e-11 44.0 0.0 3e-05 23.7 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family ATPase PF06745.13 gi|294495558|ref|YP_003542051.1| - 3.6e-42 144.3 0.4 3.6e-41 141.0 0.4 2.0 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|294495558|ref|YP_003542051.1| - 1.6e-07 31.1 0.0 5.7e-07 29.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 gi|294495558|ref|YP_003542051.1| - 1.2e-06 28.2 0.0 1.7e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.11 gi|294495558|ref|YP_003542051.1| - 5.1e-06 25.9 0.2 9.6e-06 25.0 0.2 1.4 1 0 0 1 1 1 1 Rad51 DnaB_C PF03796.15 gi|294495558|ref|YP_003542051.1| - 8.5e-06 25.3 0.0 1.4e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_14 PF13173.6 gi|294495558|ref|YP_003542051.1| - 0.00025 21.1 0.0 0.00054 20.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|294495558|ref|YP_003542051.1| - 0.001 19.3 0.1 0.0025 18.1 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|294495558|ref|YP_003542051.1| - 0.0011 18.8 0.0 0.002 17.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|294495558|ref|YP_003542051.1| - 0.0014 19.1 0.2 0.0025 18.3 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|294495558|ref|YP_003542051.1| - 0.0015 19.0 0.1 0.003 17.9 0.0 1.6 2 0 0 2 2 1 1 AAA ATPase domain T2SSE PF00437.20 gi|294495558|ref|YP_003542051.1| - 0.0017 17.4 0.0 0.0031 16.6 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein PAXNEB PF05625.11 gi|294495558|ref|YP_003542051.1| - 0.0021 17.3 0.0 0.0033 16.6 0.0 1.2 1 0 0 1 1 1 1 PAXNEB protein DAP3 PF10236.9 gi|294495558|ref|YP_003542051.1| - 0.0022 17.2 0.1 0.13 11.4 0.0 2.2 1 1 1 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 GvpD PF07088.11 gi|294495558|ref|YP_003542051.1| - 0.0027 16.4 0.2 0.93 8.0 0.1 2.2 2 0 0 2 2 2 2 GvpD gas vesicle protein AAA PF00004.29 gi|294495558|ref|YP_003542051.1| - 0.003 18.0 0.1 0.0063 16.9 0.1 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|294495558|ref|YP_003542051.1| - 0.0031 17.3 0.0 0.0057 16.4 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein NTPase_1 PF03266.15 gi|294495558|ref|YP_003542051.1| - 0.0045 16.9 0.0 0.0085 16.0 0.0 1.5 1 0 0 1 1 1 1 NTPase AAA_7 PF12775.7 gi|294495558|ref|YP_003542051.1| - 0.0064 16.0 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_19 PF13245.6 gi|294495558|ref|YP_003542051.1| - 0.012 15.9 0.0 0.019 15.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|294495558|ref|YP_003542051.1| - 0.023 14.8 0.0 0.045 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|294495558|ref|YP_003542051.1| - 0.024 14.6 0.1 0.049 13.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|294495558|ref|YP_003542051.1| - 0.034 13.9 0.0 0.057 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|294495558|ref|YP_003542051.1| - 0.036 14.0 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_11 PF13086.6 gi|294495558|ref|YP_003542051.1| - 0.037 13.8 0.2 0.1 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|294495558|ref|YP_003542051.1| - 0.048 13.9 0.0 0.074 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|294495558|ref|YP_003542051.1| - 0.052 12.8 0.0 0.079 12.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) cobW PF02492.19 gi|294495558|ref|YP_003542051.1| - 0.076 12.6 1.4 0.13 11.9 0.1 2.0 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain Nse4_C PF08743.10 gi|294495558|ref|YP_003542051.1| - 0.13 12.6 0.3 0.38 11.1 0.1 2.0 2 1 0 2 2 1 0 Nse4 C-terminal AAA_29 PF13555.6 gi|294495558|ref|YP_003542051.1| - 0.13 12.0 0.1 0.25 11.1 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|294495558|ref|YP_003542051.1| - 0.14 12.6 0.0 0.34 11.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase DUF1614 PF07758.11 gi|294495559|ref|YP_003542052.1| - 2e-36 125.5 12.9 2.7e-36 125.2 12.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) PAS_3 PF08447.12 gi|294495560|ref|YP_003542053.1| - 1.8e-35 121.1 4.8 2.6e-17 62.9 0.4 2.1 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|294495560|ref|YP_003542053.1| - 3.6e-07 30.2 0.3 0.0035 17.3 0.1 2.1 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|294495560|ref|YP_003542053.1| - 9.1e-07 29.1 1.5 0.0025 18.0 0.2 2.2 2 0 0 2 2 2 2 PAS domain MetallophosC PF16370.5 gi|294495560|ref|YP_003542053.1| - 0.00042 20.6 2.1 0.53 10.5 0.4 2.2 1 1 1 2 2 2 2 C terminal of Calcineurin-like phosphoesterase Rsbr_N PF08678.10 gi|294495560|ref|YP_003542053.1| - 0.00065 19.8 0.1 1.1 9.3 0.0 2.3 2 0 0 2 2 2 2 Rsbr N terminal PAS_11 PF14598.6 gi|294495560|ref|YP_003542053.1| - 0.01 16.0 0.0 0.49 10.5 0.0 2.2 2 0 0 2 2 2 1 PAS domain Phage_T4_gp19 PF06841.12 gi|294495560|ref|YP_003542053.1| - 0.035 14.0 0.3 0.19 11.6 0.0 2.0 2 0 0 2 2 2 0 T4-like virus tail tube protein gp19 RhodobacterPufX PF11511.8 gi|294495562|ref|YP_003542055.1| - 0.041 13.5 2.3 0.041 13.5 2.3 1.5 1 1 1 2 2 2 0 Intrinsic membrane protein PufX UPF0767 PF15990.5 gi|294495562|ref|YP_003542055.1| - 0.32 11.1 0.3 0.32 11.1 0.3 1.9 1 1 1 2 2 2 0 UPF0767 family Prok-JAB PF14464.6 gi|294495564|ref|YP_003542057.1| - 2e-09 37.3 0.0 3.2e-09 36.6 0.0 1.4 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|294495564|ref|YP_003542057.1| - 0.053 13.5 0.0 0.077 13.0 0.0 1.3 1 0 0 1 1 1 0 RadC-like JAB domain DUF92 PF01940.16 gi|294495565|ref|YP_003542058.1| - 1.2e-53 182.0 18.5 1.2e-53 182.0 18.5 3.3 2 2 1 3 3 3 1 Integral membrane protein DUF92 ArAE_1 PF06081.11 gi|294495565|ref|YP_003542058.1| - 0.0022 18.1 21.5 0.03 14.5 10.7 2.9 2 1 0 2 2 2 2 Aromatic acid exporter family member 1 TPR_1 PF00515.28 gi|294495566|ref|YP_003542059.1| - 2.1e-121 391.3 72.0 2e-10 40.0 0.0 21.8 23 0 0 23 23 21 19 Tetratricopeptide repeat TPR_2 PF07719.17 gi|294495566|ref|YP_003542059.1| - 3.5e-111 354.6 61.4 9.6e-09 34.7 0.1 22.9 22 1 1 23 23 23 17 Tetratricopeptide repeat TPR_8 PF13181.6 gi|294495566|ref|YP_003542059.1| - 7.8e-85 272.1 73.5 1.7e-08 34.0 0.1 21.7 24 0 0 24 24 22 15 Tetratricopeptide repeat TPR_11 PF13414.6 gi|294495566|ref|YP_003542059.1| - 1.9e-82 270.7 81.5 1.9e-08 33.8 0.0 21.6 11 6 12 23 23 22 18 TPR repeat TPR_16 PF13432.6 gi|294495566|ref|YP_003542059.1| - 1.7e-69 230.2 14.3 6.3e-07 29.9 0.1 14.6 7 4 11 18 18 17 14 Tetratricopeptide repeat TPR_14 PF13428.6 gi|294495566|ref|YP_003542059.1| - 6.4e-65 210.3 16.0 0.00018 22.0 0.1 19.5 6 6 14 20 20 20 14 Tetratricopeptide repeat TPR_17 PF13431.6 gi|294495566|ref|YP_003542059.1| - 1.7e-64 209.7 72.3 5.6e-05 23.2 0.0 23.4 24 0 0 24 24 23 14 Tetratricopeptide repeat TPR_9 PF13371.6 gi|294495566|ref|YP_003542059.1| - 1.1e-53 179.3 6.0 1.9e-05 24.7 0.1 12.2 6 4 5 12 12 12 8 Tetratricopeptide repeat TPR_12 PF13424.6 gi|294495566|ref|YP_003542059.1| - 1.1e-52 176.2 44.7 1.1e-06 28.9 1.2 14.8 10 4 4 14 14 14 12 Tetratricopeptide repeat TPR_6 PF13174.6 gi|294495566|ref|YP_003542059.1| - 1.2e-52 173.1 37.6 0.00019 21.8 0.0 21.5 22 0 0 22 22 22 10 Tetratricopeptide repeat TPR_19 PF14559.6 gi|294495566|ref|YP_003542059.1| - 3.6e-50 168.3 40.0 1.4e-07 31.9 0.3 13.1 7 4 4 13 13 13 9 Tetratricopeptide repeat TPR_7 PF13176.6 gi|294495566|ref|YP_003542059.1| - 3.7e-46 151.8 27.3 2.9e-05 23.8 0.0 16.6 17 0 0 17 17 17 10 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|294495566|ref|YP_003542059.1| - 1.5e-34 118.0 43.4 3.1e-07 30.5 0.3 9.5 5 3 4 10 10 10 10 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.6 gi|294495566|ref|YP_003542059.1| - 4.6e-18 65.0 46.8 0.037 14.1 0.1 17.8 13 4 7 20 20 20 4 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 gi|294495566|ref|YP_003542059.1| - 5.4e-18 65.2 33.7 0.0016 17.4 0.0 9.7 3 2 8 11 11 11 9 NMDA receptor-regulated protein 1 TPR_15 PF13429.6 gi|294495566|ref|YP_003542059.1| - 1.3e-13 50.8 24.4 0.0012 18.2 1.6 10.7 5 3 2 9 9 9 3 Tetratricopeptide repeat MIT PF04212.18 gi|294495566|ref|YP_003542059.1| - 4.6e-08 33.0 51.4 0.52 10.4 0.0 12.9 14 0 0 14 14 12 5 MIT (microtubule interacting and transport) domain TPR_5 PF12688.7 gi|294495566|ref|YP_003542059.1| - 2.6e-07 30.9 3.4 19 5.6 0.0 8.3 9 0 0 9 9 9 0 Tetratrico peptide repeat TPR_10 PF13374.6 gi|294495566|ref|YP_003542059.1| - 5.9e-07 29.2 33.9 1.1 9.2 0.1 13.5 16 0 0 16 16 14 1 Tetratricopeptide repeat BTAD PF03704.17 gi|294495566|ref|YP_003542059.1| - 7.4e-07 29.7 13.2 0.99 9.8 0.1 7.9 7 1 1 8 8 7 1 Bacterial transcriptional activator domain DUF3856 PF12968.7 gi|294495566|ref|YP_003542059.1| - 9.8e-07 28.9 15.9 0.23 11.5 0.1 10.8 8 3 4 14 14 13 1 Domain of Unknown Function (DUF3856) Alkyl_sulf_dimr PF14863.6 gi|294495566|ref|YP_003542059.1| - 5.8e-06 26.8 21.3 0.25 11.8 0.0 8.9 7 2 1 9 9 8 3 Alkyl sulfatase dimerisation Coatomer_E PF04733.14 gi|294495566|ref|YP_003542059.1| - 9.8e-06 25.2 14.9 1.2 8.5 0.0 7.1 4 2 4 8 8 8 2 Coatomer epsilon subunit SNAP PF14938.6 gi|294495566|ref|YP_003542059.1| - 0.00011 21.7 38.9 0.32 10.4 0.4 8.6 4 2 1 7 7 7 3 Soluble NSF attachment protein, SNAP PknG_TPR PF16918.5 gi|294495566|ref|YP_003542059.1| - 0.00014 20.7 2.6 4.6 5.9 0.4 4.4 3 1 1 4 4 4 1 Protein kinase G tetratricopeptide repeat RPN7 PF10602.9 gi|294495566|ref|YP_003542059.1| - 0.00016 21.5 15.4 6.8 6.4 0.0 8.5 6 4 3 9 9 9 0 26S proteasome subunit RPN7 Aida_N PF08910.10 gi|294495566|ref|YP_003542059.1| - 0.00054 20.3 12.8 4 7.9 0.1 6.8 7 1 0 7 7 6 1 Aida N-terminus SRP_TPR_like PF17004.5 gi|294495566|ref|YP_003542059.1| - 0.00076 19.5 26.1 1.4 8.9 0.8 7.9 5 2 2 8 8 7 2 Putative TPR-like repeat TPR_21 PF09976.9 gi|294495566|ref|YP_003542059.1| - 0.00081 19.1 26.6 7 6.3 0.0 8.7 5 3 4 9 9 9 0 Tetratricopeptide repeat-like domain TOM20_plant PF06552.12 gi|294495566|ref|YP_003542059.1| - 0.0016 18.2 9.7 0.43 10.3 0.0 6.9 6 2 2 8 8 8 1 Plant specific mitochondrial import receptor subunit TOM20 Rota_NSP3 PF01665.16 gi|294495566|ref|YP_003542059.1| - 0.003 16.7 3.4 0.037 13.2 0.1 3.9 4 0 0 4 4 4 1 Rotavirus non-structural protein NSP3 TPR_3 PF07720.12 gi|294495566|ref|YP_003542059.1| - 0.0076 16.2 30.0 10 6.3 0.0 12.3 14 0 0 14 14 12 0 Tetratricopeptide repeat ChAPs PF09295.10 gi|294495566|ref|YP_003542059.1| - 0.022 13.8 5.0 7.1 5.5 0.2 3.8 3 1 1 4 4 4 0 ChAPs (Chs5p-Arf1p-binding proteins) Wzy_C_2 PF11846.8 gi|294495566|ref|YP_003542059.1| - 0.11 12.4 2.4 3 7.7 0.0 4.3 5 1 1 6 6 6 0 Virulence factor membrane-bound polymerase, C-terminal TPR_20 PF14561.6 gi|294495566|ref|YP_003542059.1| - 0.17 12.3 18.3 14 6.1 0.2 7.0 6 1 3 9 9 6 0 Tetratricopeptide repeat NRBF2_MIT PF17169.4 gi|294495566|ref|YP_003542059.1| - 0.18 12.1 5.6 73 3.7 0.0 5.9 7 2 1 8 8 4 0 MIT domain of nuclear receptor-binding factor 2 Sel1 PF08238.12 gi|294495566|ref|YP_003542059.1| - 0.79 10.5 23.5 0.29 11.9 0.2 9.1 10 2 1 11 11 8 0 Sel1 repeat NRDE-2 PF08424.10 gi|294495566|ref|YP_003542059.1| - 4.3 6.4 8.7 4.8 6.2 0.1 3.8 4 1 0 4 4 3 0 NRDE-2, necessary for RNA interference HTH_Bact PF18768.1 gi|294495566|ref|YP_003542059.1| - 6.9 6.3 8.8 22 4.7 0.2 5.4 4 0 0 4 4 4 0 Helix-turn-helix bacterial domain Orn_Arg_deC_N PF02784.16 gi|294495567|ref|YP_003542060.1| - 4e-32 111.5 0.0 5.1e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|294495567|ref|YP_003542060.1| - 1.1e-20 73.7 0.0 1.3e-20 73.5 0.0 1.4 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FMN_red PF03358.15 gi|294495568|ref|YP_003542061.1| - 3.2e-18 65.9 0.0 4.1e-18 65.6 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|294495568|ref|YP_003542061.1| - 1.3e-08 34.8 0.0 1.5e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold NifU_N PF01592.16 gi|294495569|ref|YP_003542062.1| - 3.8e-43 146.7 0.0 7.5e-43 145.7 0.0 1.4 1 0 0 1 1 1 1 NifU-like N terminal domain FeS_assembly_P PF01883.19 gi|294495569|ref|YP_003542062.1| - 2.1e-12 47.0 0.7 7.6e-12 45.2 0.3 2.1 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein E2F_TDP PF02319.20 gi|294495569|ref|YP_003542062.1| - 0.018 15.1 0.1 0.033 14.2 0.1 1.4 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain Aminotran_5 PF00266.19 gi|294495570|ref|YP_003542063.1| - 1.9e-73 247.5 0.1 2.4e-73 247.2 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|294495570|ref|YP_003542063.1| - 2.9e-05 23.6 0.1 5.3e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|294495570|ref|YP_003542063.1| - 0.0021 16.7 0.1 0.003 16.1 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|294495570|ref|YP_003542063.1| - 0.0021 17.4 0.1 0.0032 16.8 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.19 gi|294495570|ref|YP_003542063.1| - 0.0045 15.8 0.1 0.0087 14.8 0.1 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_1_2 PF00155.21 gi|294495570|ref|YP_003542063.1| - 0.021 14.0 0.0 0.068 12.3 0.0 1.8 2 0 0 2 2 2 0 Aminotransferase class I and II adh_short PF00106.25 gi|294495570|ref|YP_003542063.1| - 0.094 12.2 0.1 0.26 10.7 0.1 1.7 1 0 0 1 1 1 0 short chain dehydrogenase Defensin_3 PF08131.11 gi|294495570|ref|YP_003542063.1| - 0.11 12.6 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 Defensin-like peptide family DrsE_2 PF13686.6 gi|294495571|ref|YP_003542064.1| - 1.1e-34 119.5 1.1 5e-20 72.0 0.2 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|294495571|ref|YP_003542064.1| - 3.5e-06 27.4 0.0 5.8e-06 26.7 0.0 1.3 1 1 0 1 1 1 1 DsrE/DsrF-like family TusA PF01206.17 gi|294495572|ref|YP_003542065.1| - 7.1e-23 80.2 0.1 7.8e-23 80.1 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF1269 PF06897.12 gi|294495573|ref|YP_003542066.1| - 0.031 14.6 5.4 0.044 14.1 5.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1269) Gly-zipper_Omp PF13488.6 gi|294495573|ref|YP_003542066.1| - 0.081 12.9 7.9 0.17 11.9 7.9 1.6 1 0 0 1 1 1 0 Glycine zipper DUF202 PF02656.15 gi|294495573|ref|YP_003542066.1| - 0.19 12.2 1.5 0.55 10.7 1.5 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Romo1 PF10247.9 gi|294495573|ref|YP_003542066.1| - 0.37 11.2 7.2 0.18 12.2 3.1 2.2 2 1 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 DUF3482 PF11981.8 gi|294495573|ref|YP_003542066.1| - 1.4 8.2 3.1 1.6 8.1 3.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) cobW PF02492.19 gi|294495574|ref|YP_003542067.1| - 3e-41 141.0 2.2 3e-41 141.0 2.2 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|294495574|ref|YP_003542067.1| - 0.00027 20.6 0.6 0.00071 19.2 0.6 1.7 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|294495574|ref|YP_003542067.1| - 0.0013 17.8 5.9 0.031 13.3 0.5 2.8 3 0 0 3 3 3 2 Methylmalonyl Co-A mutase-associated GTPase MeaB T2SSE PF00437.20 gi|294495574|ref|YP_003542067.1| - 0.015 14.3 0.4 0.031 13.3 0.4 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein CbiA PF01656.23 gi|294495574|ref|YP_003542067.1| - 0.022 14.8 2.4 0.042 13.9 2.0 2.0 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|294495574|ref|YP_003542067.1| - 0.04 13.8 0.7 0.14 12.0 0.7 2.1 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.12 gi|294495574|ref|YP_003542067.1| - 0.072 12.4 1.9 0.097 11.9 0.2 2.0 2 0 0 2 2 2 0 Zeta toxin Ras PF00071.22 gi|294495574|ref|YP_003542067.1| - 0.084 12.5 0.1 0.084 12.5 0.1 2.4 3 0 0 3 3 3 0 Ras family ATP_bind_1 PF03029.17 gi|294495574|ref|YP_003542067.1| - 0.59 9.9 3.5 1.8 8.3 0.1 2.6 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein MMR_HSR1_Xtn PF16897.5 gi|294495574|ref|YP_003542067.1| - 0.92 9.6 8.1 0.42 10.7 0.2 3.4 3 1 1 4 4 4 0 C-terminal region of MMR_HSR1 domain URO-D PF01208.17 gi|294495575|ref|YP_003542068.1| - 4.9e-71 239.7 0.4 5.4e-71 239.5 0.4 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) NSP11 PF06471.12 gi|294495575|ref|YP_003542068.1| - 0.059 11.9 0.0 0.094 11.2 0.0 1.2 1 0 0 1 1 1 0 NSP11 AA_permease_2 PF13520.6 gi|294495576|ref|YP_003542069.1| - 3.5e-46 157.9 53.7 5.1e-46 157.4 53.7 1.3 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|294495576|ref|YP_003542069.1| - 6.4e-45 153.6 46.3 8.3e-45 153.3 46.3 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|294495576|ref|YP_003542069.1| - 3.4e-27 95.7 0.1 4.3e-18 66.2 0.0 3.3 2 1 1 3 3 3 3 Universal stress protein family AA_permease_C PF13906.6 gi|294495576|ref|YP_003542069.1| - 1.5e-05 25.0 5.3 1.5e-05 25.0 5.3 3.5 4 0 0 4 4 4 1 C-terminus of AA_permease S1FA PF04689.13 gi|294495576|ref|YP_003542069.1| - 0.23 11.6 0.1 0.23 11.6 0.1 2.9 3 0 0 3 3 3 0 DNA binding protein S1FA Apolipoprotein PF01442.18 gi|294495577|ref|YP_003542070.1| - 0.0052 16.7 0.7 0.0052 16.7 0.7 3.2 3 2 0 3 3 3 1 Apolipoprotein A1/A4/E domain XhlA PF10779.9 gi|294495577|ref|YP_003542070.1| - 0.0067 16.6 4.9 0.017 15.4 0.0 3.5 3 0 0 3 3 3 1 Haemolysin XhlA DUF948 PF06103.11 gi|294495577|ref|YP_003542070.1| - 0.059 13.6 5.7 0.28 11.5 0.4 3.5 4 1 0 4 4 3 0 Bacterial protein of unknown function (DUF948) Fusion_gly PF00523.18 gi|294495577|ref|YP_003542070.1| - 0.061 11.6 0.1 0.13 10.5 0.1 1.5 1 0 0 1 1 1 0 Fusion glycoprotein F0 DASH_Duo1 PF08651.10 gi|294495577|ref|YP_003542070.1| - 0.09 12.6 2.4 0.26 11.1 0.1 3.0 3 0 0 3 3 3 0 DASH complex subunit Duo1 Mt_ATP-synt_D PF05873.12 gi|294495577|ref|YP_003542070.1| - 0.1 12.5 5.0 0.64 9.9 0.1 3.4 4 0 0 4 4 4 0 ATP synthase D chain, mitochondrial (ATP5H) SesA PF17107.5 gi|294495577|ref|YP_003542070.1| - 0.13 12.4 3.1 1.1 9.4 0.1 3.3 4 1 0 4 4 4 0 N-terminal domain on NACHT_NTPase and P-loop NTPases APG6_N PF17675.1 gi|294495577|ref|YP_003542070.1| - 0.21 12.1 10.1 1.6 9.2 0.6 2.8 2 0 0 2 2 2 0 Apg6 coiled-coil region PE PF00934.20 gi|294495577|ref|YP_003542070.1| - 0.24 11.7 1.0 0.92 9.9 0.0 2.5 4 0 0 4 4 2 0 PE family DUF883 PF05957.13 gi|294495577|ref|YP_003542070.1| - 0.35 11.5 0.1 0.35 11.5 0.1 3.4 4 0 0 4 4 3 0 Bacterial protein of unknown function (DUF883) FliT PF05400.13 gi|294495577|ref|YP_003542070.1| - 0.64 10.9 6.9 2.7 8.9 1.6 3.9 4 1 0 4 4 3 0 Flagellar protein FliT DUF1664 PF07889.12 gi|294495577|ref|YP_003542070.1| - 3.2 7.8 6.2 1.7 8.7 0.0 3.6 4 2 0 4 4 4 0 Protein of unknown function (DUF1664) ApoLp-III PF07464.11 gi|294495577|ref|YP_003542070.1| - 4.7 7.3 7.6 0.69 10.0 0.4 3.1 3 1 0 3 3 3 0 Apolipophorin-III precursor (apoLp-III) HalX PF08663.10 gi|294495577|ref|YP_003542070.1| - 8.8 6.7 8.5 6.9 7.1 0.8 3.8 4 0 0 4 4 4 0 HalX domain Aph-1 PF06105.12 gi|294495579|ref|YP_003542072.1| - 0.0003 20.3 0.5 0.00042 19.8 0.5 1.1 1 0 0 1 1 1 1 Aph-1 protein Not1 PF04054.15 gi|294495579|ref|YP_003542072.1| - 0.0088 15.0 0.3 0.014 14.3 0.3 1.3 1 0 0 1 1 1 1 CCR4-Not complex component, Not1 MFS_1 PF07690.16 gi|294495580|ref|YP_003542073.1| - 8.9e-55 186.0 53.4 1.5e-51 175.4 40.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|294495580|ref|YP_003542073.1| - 1.2e-14 54.1 35.4 3.8e-10 39.2 16.0 3.4 2 1 1 3 3 3 3 Sugar (and other) transporter MFS_1_like PF12832.7 gi|294495580|ref|YP_003542073.1| - 5e-07 28.9 30.6 0.00041 19.3 11.5 2.8 1 1 1 2 2 2 2 MFS_1 like family MFS_4 PF06779.14 gi|294495580|ref|YP_003542073.1| - 2.9e-06 26.8 26.9 3.8e-06 26.4 26.9 1.0 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB TRI12 PF06609.13 gi|294495580|ref|YP_003542073.1| - 0.00013 20.5 6.7 0.00013 20.5 6.7 2.1 1 1 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) DUF3671 PF12420.8 gi|294495580|ref|YP_003542073.1| - 7.5 6.7 6.2 4.4 7.4 0.8 2.8 2 0 0 2 2 2 0 Protein of unknown function HATPase_c PF02518.26 gi|294495581|ref|YP_003542074.1| - 2.6e-24 85.9 0.3 7e-24 84.5 0.3 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|294495581|ref|YP_003542074.1| - 3.6e-10 40.0 0.6 9.2e-10 38.7 0.4 1.8 1 1 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|294495581|ref|YP_003542074.1| - 2.9e-07 30.5 0.0 5.7e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|294495581|ref|YP_003542074.1| - 5.8e-07 29.4 0.3 1.9e-06 27.7 0.3 1.9 1 0 0 1 1 1 1 GHKL domain PAS PF00989.25 gi|294495581|ref|YP_003542074.1| - 1e-06 28.7 0.2 5.2e-06 26.4 0.1 2.3 2 1 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|294495581|ref|YP_003542074.1| - 0.00085 19.6 0.0 0.003 17.8 0.0 1.9 1 1 0 1 1 1 1 PAS fold SPOB_a PF14689.6 gi|294495581|ref|YP_003542074.1| - 0.001 18.8 1.9 0.0026 17.4 0.9 2.2 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_8 PF13188.7 gi|294495581|ref|YP_003542074.1| - 0.015 15.3 0.1 0.031 14.3 0.1 1.5 1 0 0 1 1 1 0 PAS domain SPC22 PF04573.12 gi|294495581|ref|YP_003542074.1| - 0.03 13.8 0.7 0.07 12.6 0.7 1.7 1 0 0 1 1 1 0 Signal peptidase subunit FTA4 PF13093.6 gi|294495581|ref|YP_003542074.1| - 0.12 12.2 2.4 0.23 11.3 0.4 2.1 2 0 0 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 HATPase_c_3 PF13589.6 gi|294495581|ref|YP_003542074.1| - 0.13 12.1 0.7 0.31 10.9 0.2 1.9 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|294495581|ref|YP_003542074.1| - 0.16 11.6 0.0 0.42 10.2 0.0 1.6 2 0 0 2 2 2 0 Archaeal 4TM region of histidine kinase B12-binding PF02310.19 gi|294495583|ref|YP_003542076.1| - 2e-19 69.8 0.0 3.4e-19 69.1 0.0 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|294495583|ref|YP_003542076.1| - 1.2e-10 41.6 0.0 2.5e-10 40.6 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain FucT_N PF18025.1 gi|294495583|ref|YP_003542076.1| - 0.082 13.4 0.1 0.36 11.3 0.1 2.1 1 0 0 1 1 1 0 Alpha-(1,3)-fucosyltransferase FucT N-terminal domain PAS_4 PF08448.10 gi|294495584|ref|YP_003542077.1| - 2.1e-23 82.7 0.0 1.3e-07 31.8 0.0 5.3 5 1 0 5 5 5 4 PAS fold PAS PF00989.25 gi|294495584|ref|YP_003542077.1| - 2.8e-22 78.8 0.1 6.2e-14 52.0 0.0 4.7 5 0 0 5 5 5 2 PAS fold PAS_9 PF13426.7 gi|294495584|ref|YP_003542077.1| - 4.4e-19 68.7 0.7 7.7e-09 35.7 0.0 4.4 4 0 0 4 4 4 4 PAS domain PAS_8 PF13188.7 gi|294495584|ref|YP_003542077.1| - 1.4e-17 63.3 0.0 6.1e-11 42.1 0.0 3.5 4 0 0 4 4 4 2 PAS domain PAS_3 PF08447.12 gi|294495584|ref|YP_003542077.1| - 1.6e-15 57.2 0.1 4e-06 27.0 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_7 PF12860.7 gi|294495584|ref|YP_003542077.1| - 0.017 15.3 0.5 4.7 7.4 0.0 4.1 4 1 1 5 5 5 0 PAS fold HATPase_c PF02518.26 gi|294495585|ref|YP_003542078.1| - 5.2e-31 107.5 0.4 1.4e-30 106.1 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|294495585|ref|YP_003542078.1| - 4.3e-21 75.7 0.0 5.4e-15 55.9 0.0 2.6 3 0 0 3 3 3 2 GAF domain HisKA PF00512.25 gi|294495585|ref|YP_003542078.1| - 4.4e-19 68.3 2.3 2e-18 66.2 0.0 3.1 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|294495585|ref|YP_003542078.1| - 2.8e-11 43.6 4.6 4.7e-11 42.9 0.1 3.4 3 1 1 4 4 4 1 PAS domain PAS_3 PF08447.12 gi|294495585|ref|YP_003542078.1| - 1.7e-09 37.9 0.0 6.2e-09 36.0 0.0 2.1 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|294495585|ref|YP_003542078.1| - 6.5e-08 32.6 0.0 1.7e-07 31.2 0.0 1.8 1 0 0 1 1 1 1 PAS fold GAF_3 PF13492.6 gi|294495585|ref|YP_003542078.1| - 1.1e-07 32.2 0.0 2.8e-06 27.7 0.0 2.5 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|294495585|ref|YP_003542078.1| - 6.2e-06 26.1 0.0 1.8e-05 24.6 0.0 1.8 1 0 0 1 1 1 1 PAS domain GAF PF01590.26 gi|294495585|ref|YP_003542078.1| - 1.6e-05 25.6 0.0 4.2e-05 24.2 0.0 1.8 2 0 0 2 2 2 1 GAF domain HATPase_c_3 PF13589.6 gi|294495585|ref|YP_003542078.1| - 0.00015 21.6 0.0 0.00042 20.1 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|294495585|ref|YP_003542078.1| - 0.0016 18.3 0.1 0.013 15.4 0.0 2.6 2 1 1 3 3 3 1 GHKL domain HATPase_c_2 PF13581.6 gi|294495585|ref|YP_003542078.1| - 0.0046 16.9 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_11 PF14598.6 gi|294495585|ref|YP_003542078.1| - 0.0097 16.0 0.0 0.023 14.8 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|294495585|ref|YP_003542078.1| - 0.015 15.6 0.0 0.07 13.4 0.0 2.2 2 0 0 2 2 2 0 PAS fold Methyltransf_31 PF13847.6 gi|294495588|ref|YP_003542081.1| - 4e-18 65.6 0.0 4.7e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|294495588|ref|YP_003542081.1| - 7.2e-17 61.8 0.0 9.7e-17 61.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|294495588|ref|YP_003542081.1| - 1.1e-16 61.3 0.0 1.5e-16 60.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|294495588|ref|YP_003542081.1| - 3.7e-15 56.5 0.0 4.8e-15 56.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|294495588|ref|YP_003542081.1| - 4.7e-11 42.5 0.0 5.7e-11 42.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|294495588|ref|YP_003542081.1| - 4.2e-10 39.7 0.0 5.1e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|294495588|ref|YP_003542081.1| - 5.1e-07 29.0 0.0 6e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_2 PF00891.18 gi|294495588|ref|YP_003542081.1| - 8.3e-07 28.5 0.0 9.9e-07 28.3 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain NodS PF05401.11 gi|294495588|ref|YP_003542081.1| - 5.3e-05 22.9 0.0 6.7e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_5 PF01795.19 gi|294495588|ref|YP_003542081.1| - 6.4e-05 22.6 0.0 8.6e-05 22.2 0.0 1.2 1 1 0 1 1 1 1 MraW methylase family MTS PF05175.14 gi|294495588|ref|YP_003542081.1| - 0.00016 21.3 0.0 0.0002 21.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltr_RsmB-F PF01189.17 gi|294495588|ref|YP_003542081.1| - 0.00038 20.1 0.0 0.0024 17.5 0.0 1.9 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F PCMT PF01135.19 gi|294495588|ref|YP_003542081.1| - 0.00051 19.9 0.0 0.00075 19.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CheR PF01739.18 gi|294495588|ref|YP_003542081.1| - 0.0015 18.0 0.5 0.0068 15.9 0.3 1.8 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain Methyltransf_PK PF05891.12 gi|294495588|ref|YP_003542081.1| - 0.002 17.7 0.0 0.0026 17.3 0.0 1.1 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase Methyltransf_24 PF13578.6 gi|294495588|ref|YP_003542081.1| - 0.0027 18.7 0.0 0.0046 17.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DUF3052 PF11253.8 gi|294495588|ref|YP_003542081.1| - 0.0031 17.4 0.0 0.0058 16.5 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3052) Rsm22 PF09243.10 gi|294495588|ref|YP_003542081.1| - 0.0032 16.8 0.0 0.0041 16.4 0.0 1.1 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 CMAS PF02353.20 gi|294495588|ref|YP_003542081.1| - 0.0043 16.4 0.0 0.0053 16.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|294495588|ref|YP_003542081.1| - 0.0062 16.5 0.0 0.008 16.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|294495588|ref|YP_003542081.1| - 0.038 13.1 0.0 0.047 12.7 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TRM13 PF05206.14 gi|294495588|ref|YP_003542081.1| - 0.13 11.7 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase TRM13 GidB PF02527.15 gi|294495588|ref|YP_003542081.1| - 0.14 11.5 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Uso1_p115_head PF04869.14 gi|294495588|ref|YP_003542081.1| - 0.18 10.9 0.2 0.29 10.2 0.2 1.3 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, head region FMN_red PF03358.15 gi|294495589|ref|YP_003542082.1| - 4.2e-24 85.0 0.0 5.2e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|294495589|ref|YP_003542082.1| - 1.6e-11 44.3 0.0 2e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|294495589|ref|YP_003542082.1| - 0.001 19.3 0.0 0.0018 18.5 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Erythro-docking PF09277.11 gi|294495589|ref|YP_003542082.1| - 0.13 12.2 0.1 0.25 11.3 0.1 1.4 1 0 0 1 1 1 0 Erythronolide synthase, docking Spore_YtfJ PF09579.10 gi|294495590|ref|YP_003542083.1| - 4.4e-29 100.5 3.1 6.3e-29 100.0 3.1 1.2 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) DUF3740 PF12548.8 gi|294495590|ref|YP_003542083.1| - 0.019 15.4 0.3 0.029 14.8 0.3 1.3 1 0 0 1 1 1 0 Sulfatase protein SBP_bac_5 PF00496.22 gi|294495590|ref|YP_003542083.1| - 0.033 13.2 0.0 0.042 12.8 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle DUF2953 PF11167.8 gi|294495591|ref|YP_003542084.1| - 6.6e-08 32.5 0.0 1.1e-07 31.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2953) Cupredoxin_1 PF13473.6 gi|294495592|ref|YP_003542085.1| - 2.8e-12 46.7 0.1 3.4e-12 46.4 0.1 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|294495592|ref|YP_003542085.1| - 1.8e-11 44.3 1.3 3e-09 37.2 1.3 2.2 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family DUF3290 PF11694.8 gi|294495592|ref|YP_003542085.1| - 0.0097 15.9 0.1 0.013 15.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3290) DUF2190 PF09956.9 gi|294495592|ref|YP_003542085.1| - 0.022 15.3 0.6 0.033 14.7 0.6 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2190) DUF4330 PF14221.6 gi|294495592|ref|YP_003542085.1| - 0.022 15.0 0.3 0.025 14.8 0.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4330) DUF4969 PF16339.5 gi|294495592|ref|YP_003542085.1| - 0.038 14.3 0.7 0.5 10.7 0.7 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4969) CCG PF02754.16 gi|294495593|ref|YP_003542086.1| - 1.3e-20 73.4 2.1 3.3e-11 43.3 0.1 2.7 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|294495593|ref|YP_003542086.1| - 1.7e-11 44.4 2.3 1.7e-11 44.4 2.3 2.3 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495593|ref|YP_003542086.1| - 2.3e-10 41.2 4.0 2.3e-10 41.2 4.0 2.1 2 0 0 2 2 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|294495593|ref|YP_003542086.1| - 1.7e-07 31.7 3.7 1.7e-07 31.7 3.7 2.3 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|294495593|ref|YP_003542086.1| - 2.2e-07 31.3 2.4 2.2e-07 31.3 2.4 2.3 4 0 0 4 4 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294495593|ref|YP_003542086.1| - 6.2e-06 26.2 16.8 0.00062 19.8 2.0 4.1 3 2 0 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|294495593|ref|YP_003542086.1| - 0.00016 21.8 4.2 0.18 12.0 0.9 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|294495593|ref|YP_003542086.1| - 0.00048 20.2 12.0 0.002 18.2 2.1 3.2 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294495593|ref|YP_003542086.1| - 0.0012 18.8 1.8 0.0012 18.8 1.8 3.8 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4 PF00037.27 gi|294495593|ref|YP_003542086.1| - 0.0044 16.8 13.4 0.0068 16.2 3.5 3.7 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|294495593|ref|YP_003542086.1| - 0.0068 16.6 14.0 0.04 14.1 10.3 3.3 3 1 2 5 5 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294495593|ref|YP_003542086.1| - 0.01 15.9 3.5 0.01 15.9 3.5 3.6 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|294495593|ref|YP_003542086.1| - 0.016 15.7 2.2 0.016 15.7 2.2 4.6 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|294495593|ref|YP_003542086.1| - 0.33 12.0 21.4 0.19 12.8 4.1 3.8 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|294495593|ref|YP_003542086.1| - 0.91 9.3 4.6 15 5.4 0.2 2.5 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_22 PF17179.4 gi|294495593|ref|YP_003542086.1| - 6.5 7.7 10.2 21 6.0 2.3 3.0 2 1 2 4 4 3 0 4Fe-4S dicluster domain PK PF00224.21 gi|294495594|ref|YP_003542087.1| - 3e-119 398.0 0.0 3.9e-119 397.6 0.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|294495594|ref|YP_003542087.1| - 1.9e-23 82.9 0.0 6.6e-23 81.2 0.0 1.9 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|294495594|ref|YP_003542087.1| - 1e-05 24.8 0.3 7.8e-05 21.9 0.1 2.1 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family IF2_N PF04760.15 gi|294495594|ref|YP_003542087.1| - 0.044 13.6 0.5 6.4 6.7 0.0 3.5 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region Diphthami_syn_2 PF01902.17 gi|294495596|ref|YP_003542089.1| - 2.1e-65 220.3 0.9 1.5e-63 214.2 0.2 2.3 2 0 0 2 2 2 1 Diphthamide synthase Asn_synthase PF00733.21 gi|294495596|ref|YP_003542089.1| - 1.8e-41 143.0 0.0 8e-29 101.4 0.0 2.1 1 1 1 2 2 2 2 Asparagine synthase NAD_synthase PF02540.17 gi|294495596|ref|YP_003542089.1| - 3.1e-06 26.5 0.0 6.4e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 NAD synthase GATase_7 PF13537.6 gi|294495596|ref|YP_003542089.1| - 6.4e-05 22.9 0.0 0.00014 21.8 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain tRNA_Me_trans PF03054.16 gi|294495596|ref|YP_003542089.1| - 7.3e-05 21.7 0.0 0.0053 15.6 0.0 2.8 3 0 0 3 3 3 1 tRNA methyl transferase QueC PF06508.13 gi|294495596|ref|YP_003542089.1| - 0.0039 16.7 0.0 0.068 12.7 0.0 2.7 3 0 0 3 3 3 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|294495596|ref|YP_003542089.1| - 0.031 14.0 0.1 0.087 12.6 0.0 1.8 2 0 0 2 2 2 0 PP-loop family HemolysinCabind PF00353.19 gi|294495596|ref|YP_003542089.1| - 0.38 10.8 1.2 0.67 10.0 1.2 1.4 1 0 0 1 1 1 0 RTX calcium-binding nonapeptide repeat (4 copies) Hydrolase_3 PF08282.12 gi|294495597|ref|YP_003542090.1| - 1.5e-17 64.2 0.0 3.3e-17 63.1 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|294495597|ref|YP_003542090.1| - 1.2e-05 25.0 0.0 0.002 17.7 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.6 gi|294495597|ref|YP_003542090.1| - 0.0002 21.4 0.0 0.00035 20.6 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|294495597|ref|YP_003542090.1| - 0.00045 20.7 0.8 0.8 10.1 0.0 2.7 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|294495597|ref|YP_003542090.1| - 0.0059 16.7 0.7 1 9.4 0.2 2.7 3 1 1 4 4 4 2 Haloacid dehalogenase-like hydrolase Tic110 PF16940.5 gi|294495597|ref|YP_003542090.1| - 0.2 10.1 0.1 0.31 9.5 0.1 1.2 1 0 0 1 1 1 0 Chloroplast envelope transporter Glyco_hydro_15 PF00723.21 gi|294495599|ref|YP_003542092.1| - 0.024 13.4 0.1 0.049 12.4 0.1 1.6 1 1 0 1 1 1 0 Glycosyl hydrolases family 15 RuBisCO_large PF00016.20 gi|294495600|ref|YP_003542093.1| - 6.1e-94 314.6 0.0 3.1e-67 226.9 0.0 2.1 1 1 1 2 2 2 2 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|294495600|ref|YP_003542093.1| - 7.1e-29 100.4 0.0 1.4e-28 99.5 0.0 1.5 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain DEAD PF00270.29 gi|294495601|ref|YP_003542094.1| - 6.3e-34 117.2 0.0 1.6e-33 116.0 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|294495601|ref|YP_003542094.1| - 6.8e-32 110.8 0.0 1.3e-31 109.9 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.31 gi|294495601|ref|YP_003542094.1| - 1.6e-21 76.8 0.7 9.1e-20 71.1 0.0 3.0 4 0 0 4 4 4 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|294495601|ref|YP_003542094.1| - 1.2e-10 41.6 0.0 2.4e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|294495601|ref|YP_003542094.1| - 0.00015 20.7 0.1 0.00048 19.0 0.0 1.8 2 0 0 2 2 2 1 SNF2 family N-terminal domain AAA_19 PF13245.6 gi|294495601|ref|YP_003542094.1| - 0.017 15.4 0.0 0.34 11.2 0.0 2.6 2 1 0 2 2 2 0 AAA domain CM_2 PF01817.21 gi|294495601|ref|YP_003542094.1| - 0.03 14.7 8.2 0.93 9.9 0.1 4.4 4 1 0 4 4 4 0 Chorismate mutase type II CcmH PF03918.14 gi|294495601|ref|YP_003542094.1| - 0.26 10.6 0.8 1.3 8.3 0.0 2.4 3 0 0 3 3 3 0 Cytochrome C biogenesis protein Metallophos_2 PF12850.7 gi|294495602|ref|YP_003542095.1| - 0.00018 21.8 0.0 0.00024 21.3 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain SpoIIM PF01944.17 gi|294495603|ref|YP_003542096.1| - 0.00045 20.3 0.4 0.00054 20.0 0.4 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M UPF0242 PF06785.11 gi|294495603|ref|YP_003542096.1| - 0.00053 20.1 0.2 0.00064 19.9 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus Pex24p PF06398.11 gi|294495603|ref|YP_003542096.1| - 0.0057 15.7 0.1 0.0067 15.5 0.1 1.2 1 1 0 1 1 1 1 Integral peroxisomal membrane peroxin Ndc1_Nup PF09531.10 gi|294495603|ref|YP_003542096.1| - 0.0082 14.9 1.1 0.0092 14.7 1.1 1.0 1 0 0 1 1 1 1 Nucleoporin protein Ndc1-Nup Tetraspanin PF00335.20 gi|294495603|ref|YP_003542096.1| - 0.011 15.5 0.0 0.013 15.3 0.0 1.1 1 0 0 1 1 1 0 Tetraspanin family HSBP1 PF06825.12 gi|294495603|ref|YP_003542096.1| - 0.038 13.8 0.6 0.096 12.6 0.2 1.8 2 0 0 2 2 2 0 Heat shock factor binding protein 1 Vps51 PF08700.11 gi|294495603|ref|YP_003542096.1| - 0.066 13.3 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Vps51/Vps67 PspB PF06667.12 gi|294495603|ref|YP_003542096.1| - 0.16 12.1 0.5 0.49 10.5 0.5 1.8 1 1 0 1 1 1 0 Phage shock protein B XhlA PF10779.9 gi|294495603|ref|YP_003542096.1| - 0.34 11.2 1.2 0.61 10.3 1.2 1.5 1 0 0 1 1 1 0 Haemolysin XhlA ANF_receptor PF01094.28 gi|294495604|ref|YP_003542097.1| - 2.4e-30 105.9 0.2 5e-30 104.8 0.2 1.5 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_6 PF13458.6 gi|294495604|ref|YP_003542097.1| - 8.3e-25 88.2 0.6 3.3e-24 86.2 0.6 1.8 1 1 0 1 1 1 1 Periplasmic binding protein Peripla_BP_4 PF13407.6 gi|294495604|ref|YP_003542097.1| - 0.04 13.5 1.2 0.088 12.4 1.2 1.5 1 1 0 1 1 1 0 Periplasmic binding protein domain CoA_binding_2 PF13380.6 gi|294495604|ref|YP_003542097.1| - 0.098 13.2 0.0 0.37 11.3 0.0 1.9 1 0 0 1 1 1 0 CoA binding domain Ala_racemase_N PF01168.20 gi|294495605|ref|YP_003542098.1| - 4.5e-28 98.4 0.0 5.2e-28 98.2 0.0 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Orn_Arg_deC_N PF02784.16 gi|294495605|ref|YP_003542098.1| - 0.074 12.4 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PPR PF01535.20 gi|294495605|ref|YP_003542098.1| - 0.12 12.7 0.0 21 5.6 0.2 3.3 3 0 0 3 3 3 0 PPR repeat NigD_N PF12667.7 gi|294495605|ref|YP_003542098.1| - 0.12 12.4 0.0 1.3 9.2 0.0 2.2 1 1 1 2 2 2 0 NigD-like N-terminal OB domain TPP_enzyme_N PF02776.18 gi|294495606|ref|YP_003542099.1| - 5.4e-45 153.1 0.0 5.2e-44 149.9 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|294495606|ref|YP_003542099.1| - 2.6e-34 118.2 0.0 6.6e-34 116.9 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|294495606|ref|YP_003542099.1| - 2.3e-30 105.1 0.2 4.6e-30 104.1 0.2 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Rubredoxin PF00301.20 gi|294495606|ref|YP_003542099.1| - 2e-09 37.3 6.6 1.4e-08 34.6 6.6 2.2 1 1 0 1 1 1 1 Rubredoxin XFP_N PF09364.10 gi|294495606|ref|YP_003542099.1| - 0.08 11.7 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 XFP N-terminal domain Zn-ribbon_8 PF09723.10 gi|294495606|ref|YP_003542099.1| - 0.088 12.9 1.0 0.2 11.8 1.0 1.6 1 0 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|294495606|ref|YP_003542099.1| - 0.1 12.0 1.8 5.2 6.6 0.4 2.6 2 0 0 2 2 2 0 zinc-ribbon domain DUF2072 PF09845.9 gi|294495606|ref|YP_003542099.1| - 0.18 12.0 0.0 0.37 11.0 0.0 1.6 1 0 0 1 1 1 0 Zn-ribbon containing protein zf-HIT PF04438.16 gi|294495606|ref|YP_003542099.1| - 0.71 9.8 3.5 17 5.3 0.2 2.3 2 0 0 2 2 2 0 HIT zinc finger GUN4_N PF16416.5 gi|294495607|ref|YP_003542100.1| - 0.0066 16.4 0.0 0.009 16.0 0.0 1.2 1 0 0 1 1 1 1 ARM-like repeat domain, GUN4-N terminal HK PF02110.15 gi|294495608|ref|YP_003542101.1| - 5.7e-80 268.3 4.9 6.4e-80 268.1 4.9 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|294495608|ref|YP_003542101.1| - 1.8e-09 37.3 1.3 2.3e-09 37.0 1.3 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|294495608|ref|YP_003542101.1| - 5e-06 26.2 0.8 6.4e-06 25.8 0.8 1.1 1 0 0 1 1 1 1 Carbohydrate kinase PfkB PF00294.24 gi|294495608|ref|YP_003542101.1| - 0.0066 15.8 0.1 0.009 15.3 0.1 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase TMP-TENI PF02581.17 gi|294495609|ref|YP_003542102.1| - 6.3e-61 204.9 1.3 7.4e-61 204.6 1.3 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase Ribul_P_3_epim PF00834.19 gi|294495609|ref|YP_003542102.1| - 0.0052 16.2 0.5 0.013 14.9 0.5 1.7 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family NMO PF03060.15 gi|294495609|ref|YP_003542102.1| - 0.044 13.2 0.5 1.1 8.5 0.1 2.2 2 0 0 2 2 2 0 Nitronate monooxygenase ATP_bind_3 PF01171.20 gi|294495611|ref|YP_003542104.1| - 1.7e-15 57.2 0.0 2.4e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|294495611|ref|YP_003542104.1| - 8.1e-09 34.7 0.0 1.3e-08 34.1 0.0 1.4 1 1 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|294495611|ref|YP_003542104.1| - 6.8e-06 26.0 0.0 9.9e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.19 gi|294495611|ref|YP_003542104.1| - 1.2e-05 25.4 0.0 2.1e-05 24.6 0.0 1.4 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|294495611|ref|YP_003542104.1| - 0.0049 16.4 0.0 0.0089 15.5 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|294495611|ref|YP_003542104.1| - 0.048 12.8 0.0 0.069 12.3 0.0 1.4 1 1 0 1 1 1 0 NAD synthase NYN PF01936.18 gi|294495612|ref|YP_003542105.1| - 6.2e-35 120.8 0.1 7.4e-35 120.6 0.1 1.0 1 0 0 1 1 1 1 NYN domain TPP_enzyme_C PF02775.21 gi|294495612|ref|YP_003542105.1| - 0.033 14.0 0.1 0.083 12.7 0.0 1.7 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LpxI_N PF17930.1 gi|294495612|ref|YP_003542105.1| - 0.04 13.8 0.0 0.084 12.8 0.0 1.5 1 0 0 1 1 1 0 LpxI N-terminal domain NosD PF05048.13 gi|294495613|ref|YP_003542106.1| - 1.8e-36 125.6 28.0 1.8e-36 125.6 28.0 1.9 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|294495613|ref|YP_003542106.1| - 3.8e-07 30.1 33.1 2.3e-06 27.6 28.6 2.7 2 1 0 2 2 2 1 Right handed beta helix region Pectinesterase PF01095.19 gi|294495613|ref|YP_003542106.1| - 4.1e-05 22.4 1.2 6.2e-05 21.9 1.2 1.3 1 0 0 1 1 1 1 Pectinesterase DUF1565 PF07602.11 gi|294495613|ref|YP_003542106.1| - 0.00016 21.1 15.4 0.0086 15.4 12.6 2.9 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) LptF_LptG PF03739.14 gi|294495613|ref|YP_003542106.1| - 0.15 10.9 0.2 0.24 10.2 0.2 1.4 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG Virul_fac_BrkB PF03631.15 gi|294495615|ref|YP_003542108.1| - 1e-43 149.9 25.1 1.2e-43 149.6 25.1 1.0 1 0 0 1 1 1 1 Virulence factor BrkB DUF3487 PF11990.8 gi|294495615|ref|YP_003542108.1| - 7.3 6.5 9.8 5 7.0 0.1 3.7 3 1 0 4 4 4 0 Protein of unknown function (DUF3487) PLDc_N PF13396.6 gi|294495617|ref|YP_003542110.1| - 7.3e-11 41.8 7.2 7.3e-11 41.8 7.2 1.4 1 1 0 1 1 1 1 Phospholipase_D-nuclease N-terminal YbjM PF11045.8 gi|294495617|ref|YP_003542110.1| - 0.0055 16.9 2.3 0.0061 16.7 2.3 1.0 1 0 0 1 1 1 1 Putative inner membrane protein of Enterobacteriaceae Polysacc_synt PF01943.17 gi|294495617|ref|YP_003542110.1| - 0.0065 15.9 0.6 0.007 15.8 0.6 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein DUF2569 PF10754.9 gi|294495617|ref|YP_003542110.1| - 0.028 14.8 2.9 0.028 14.9 2.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2569) FeoB_associated PF12669.7 gi|294495617|ref|YP_003542110.1| - 2.9 8.4 5.8 16 6.0 2.2 2.1 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein MFS_1 PF07690.16 gi|294495618|ref|YP_003542111.1| - 3.8e-56 190.5 31.4 1.9e-29 102.7 8.2 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|294495618|ref|YP_003542111.1| - 5.1e-09 35.5 32.5 3.7e-06 26.1 9.1 3.3 2 1 1 3 3 3 3 Sugar (and other) transporter MFS_1_like PF12832.7 gi|294495618|ref|YP_003542111.1| - 2.3e-08 33.3 20.9 5.9e-05 22.1 20.9 3.0 1 1 0 1 1 1 1 MFS_1 like family MFS_3 PF05977.13 gi|294495618|ref|YP_003542111.1| - 0.0017 16.9 18.8 0.03 12.7 2.3 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector UbiA PF01040.18 gi|294495619|ref|YP_003542112.1| - 4.1e-12 46.0 20.0 2e-11 43.7 19.8 1.8 1 1 0 1 1 1 1 UbiA prenyltransferase family EcsB PF05975.12 gi|294495619|ref|YP_003542112.1| - 5.5 5.7 21.2 0.0077 15.1 8.4 2.3 1 1 0 2 2 2 0 Bacterial ABC transporter protein EcsB AMP-binding_C_2 PF14535.6 gi|294495620|ref|YP_003542113.1| - 1e-29 102.7 0.7 2.1e-29 101.6 0.7 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|294495620|ref|YP_003542113.1| - 6.6e-18 64.5 0.0 6.4e-17 61.2 0.0 1.9 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.12 gi|294495620|ref|YP_003542113.1| - 0.0013 17.9 0.0 0.059 12.4 0.0 2.3 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE DUF2099 PF09872.9 gi|294495621|ref|YP_003542114.1| - 2.3e-113 377.6 0.3 2.7e-113 377.4 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) Thr_synth_N PF14821.6 gi|294495621|ref|YP_003542114.1| - 0.2 11.9 0.0 0.86 9.9 0.0 1.9 2 0 0 2 2 2 0 Threonine synthase N terminus Molydop_binding PF01568.21 gi|294495622|ref|YP_003542115.1| - 1.7e-13 50.6 0.0 2e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|294495622|ref|YP_003542115.1| - 4.9e-06 26.6 0.0 7.8e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain DUF1967 PF09269.11 gi|294495622|ref|YP_003542115.1| - 0.004 17.1 0.1 0.2 11.6 0.2 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1967) TPP_enzyme_M PF00205.22 gi|294495623|ref|YP_003542116.1| - 9.1e-06 25.5 0.0 0.00083 19.1 0.0 2.8 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain DpaA_N PF16924.5 gi|294495623|ref|YP_003542116.1| - 0.11 12.6 0.0 8.3 6.5 0.0 3.1 2 1 1 3 3 3 0 Dipicolinate synthase subunit A N-terminal domain FeS PF04060.13 gi|294495624|ref|YP_003542117.1| - 6.2e-14 51.4 2.5 6.2e-14 51.4 2.5 2.5 2 0 0 2 2 2 1 Putative Fe-S cluster Fer4 PF00037.27 gi|294495624|ref|YP_003542117.1| - 6.1e-08 32.2 5.0 6.1e-08 32.2 5.0 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|294495624|ref|YP_003542117.1| - 4.2e-07 30.0 15.0 1.6e-06 28.1 8.8 2.9 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294495624|ref|YP_003542117.1| - 2.5e-06 27.3 21.8 6.8e-06 25.9 4.2 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294495624|ref|YP_003542117.1| - 3.1e-06 27.7 33.0 9.8e-05 22.9 12.5 3.0 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294495624|ref|YP_003542117.1| - 5e-06 26.6 6.2 5e-06 26.6 6.2 2.8 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294495624|ref|YP_003542117.1| - 2e-05 24.4 3.5 2e-05 24.4 3.5 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|294495624|ref|YP_003542117.1| - 8.9e-05 22.5 1.6 8.9e-05 22.5 1.6 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|294495624|ref|YP_003542117.1| - 0.00015 22.4 5.1 0.00025 21.7 0.3 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|294495624|ref|YP_003542117.1| - 0.00049 20.4 2.9 0.00049 20.4 2.9 3.6 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|294495624|ref|YP_003542117.1| - 0.0026 18.7 20.0 0.0097 16.8 2.6 3.0 2 1 1 3 3 3 3 4Fe-4S double cluster binding domain YhfH PF14149.6 gi|294495624|ref|YP_003542117.1| - 0.0039 17.1 1.0 0.0039 17.1 1.0 2.5 2 0 0 2 2 2 1 YhfH-like protein Fer4_3 PF12798.7 gi|294495624|ref|YP_003542117.1| - 0.0094 16.8 23.3 0.016 16.1 8.0 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|294495624|ref|YP_003542117.1| - 0.01 16.3 9.7 0.01 16.3 9.7 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|294495624|ref|YP_003542117.1| - 0.015 15.9 14.5 0.04 14.5 9.5 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Flu_C_NS2 PF03555.14 gi|294495624|ref|YP_003542117.1| - 0.081 13.1 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Influenza C non-structural protein (NS2) Fer4_13 PF13370.6 gi|294495624|ref|YP_003542117.1| - 0.24 12.0 14.7 0.1 13.2 8.2 3.0 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|294495624|ref|YP_003542117.1| - 2.9 8.1 12.3 0.66 10.2 2.9 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|294495624|ref|YP_003542117.1| - 8.4 7.3 17.3 4.9 8.1 8.9 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain FeThRed_B PF02943.15 gi|294495625|ref|YP_003542118.1| - 5.7e-29 100.2 3.5 6.7e-29 100.0 3.5 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain Thioredoxin PF00085.20 gi|294495626|ref|YP_003542119.1| - 8.7e-31 106.0 1.2 1.1e-30 105.7 1.2 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|294495626|ref|YP_003542119.1| - 3.4e-07 30.5 0.1 0.00014 22.2 0.0 2.3 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|294495626|ref|YP_003542119.1| - 5.2e-07 30.1 0.6 1.1e-06 29.1 0.6 1.5 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|294495626|ref|YP_003542119.1| - 7.9e-07 29.0 0.4 1.3e-06 28.3 0.4 1.4 1 0 0 1 1 1 1 Thioredoxin domain OST3_OST6 PF04756.13 gi|294495626|ref|YP_003542119.1| - 1.8e-06 27.5 0.0 2.3e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family AhpC-TSA PF00578.21 gi|294495626|ref|YP_003542119.1| - 5.4e-06 26.3 0.1 7.6e-06 25.9 0.1 1.3 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_6 PF13848.6 gi|294495626|ref|YP_003542119.1| - 7.9e-06 25.9 0.1 1.3e-05 25.2 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.6 gi|294495626|ref|YP_003542119.1| - 6.8e-05 23.0 0.1 9.5e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin-like HyaE PF07449.11 gi|294495626|ref|YP_003542119.1| - 0.00065 19.6 0.0 0.00083 19.3 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE TraF PF13728.6 gi|294495626|ref|YP_003542119.1| - 0.0008 19.3 0.0 0.00097 19.0 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_9 PF14595.6 gi|294495626|ref|YP_003542119.1| - 0.0013 18.5 0.0 0.0015 18.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.6 gi|294495626|ref|YP_003542119.1| - 0.002 18.3 1.1 0.014 15.5 0.7 2.0 1 1 1 2 2 2 1 Thioredoxin Redoxin PF08534.10 gi|294495626|ref|YP_003542119.1| - 0.013 15.2 1.3 0.038 13.7 0.8 1.8 1 1 1 2 2 2 0 Redoxin DUF953 PF06110.11 gi|294495626|ref|YP_003542119.1| - 0.049 13.2 0.4 0.2 11.3 0.3 1.9 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) DIM1 PF02966.16 gi|294495626|ref|YP_003542119.1| - 0.052 13.3 0.1 0.067 13.0 0.1 1.1 1 0 0 1 1 1 0 Mitosis protein DIM1 DSBA PF01323.20 gi|294495626|ref|YP_003542119.1| - 0.076 12.8 0.0 0.66 9.7 0.0 1.9 1 1 1 2 2 2 0 DSBA-like thioredoxin domain DUF836 PF05768.14 gi|294495626|ref|YP_003542119.1| - 0.12 12.8 0.0 0.19 12.1 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) FlpD PF02662.16 gi|294495627|ref|YP_003542120.1| - 4.4e-55 184.9 2.7 3.7e-52 175.5 0.0 4.3 4 0 0 4 4 4 1 Methyl-viologen-reducing hydrogenase, delta subunit Pyr_redox_2 PF07992.14 gi|294495627|ref|YP_003542120.1| - 1.1e-18 67.5 0.1 4.7e-18 65.4 0.1 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|294495627|ref|YP_003542120.1| - 7.8e-18 63.5 47.4 7e-07 28.8 5.1 5.6 5 1 0 5 5 4 3 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294495627|ref|YP_003542120.1| - 3e-15 56.6 31.8 1.1e-06 29.2 12.0 5.3 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|294495627|ref|YP_003542120.1| - 1.5e-14 53.8 39.8 8.4e-09 35.4 11.1 5.3 5 0 0 5 5 5 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294495627|ref|YP_003542120.1| - 2.7e-13 49.8 29.9 5.9e-05 23.1 0.1 5.1 4 1 1 5 5 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495627|ref|YP_003542120.1| - 1.3e-12 48.4 22.1 0.00076 20.4 2.0 5.4 5 0 0 5 5 5 3 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|294495627|ref|YP_003542120.1| - 5.3e-12 45.3 52.3 0.00021 21.2 3.6 5.6 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|294495627|ref|YP_003542120.1| - 2.1e-10 40.0 41.6 0.00029 20.8 4.1 5.6 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|294495627|ref|YP_003542120.1| - 3.5e-10 39.9 35.1 9.1e-07 28.9 10.9 4.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain GIDA PF01134.22 gi|294495627|ref|YP_003542120.1| - 8.9e-08 31.6 1.3 4.2e-06 26.1 0.1 2.6 3 0 0 3 3 3 1 Glucose inhibited division protein A DAO PF01266.24 gi|294495627|ref|YP_003542120.1| - 9.9e-08 31.9 0.3 0.0011 18.6 0.4 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|294495627|ref|YP_003542120.1| - 3.1e-07 30.1 0.1 6.9e-07 29.0 0.1 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|294495627|ref|YP_003542120.1| - 5.4e-07 30.1 1.7 4.6e-06 27.1 0.4 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|294495627|ref|YP_003542120.1| - 6.2e-07 28.9 0.5 9.9e-07 28.2 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|294495627|ref|YP_003542120.1| - 8.8e-07 28.5 0.1 3.5e-05 23.2 0.0 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_8 PF13183.6 gi|294495627|ref|YP_003542120.1| - 9.3e-07 29.2 27.1 0.031 14.7 2.0 4.7 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|294495627|ref|YP_003542120.1| - 2e-06 28.2 27.4 0.025 15.1 1.8 4.5 4 1 1 5 5 4 3 4Fe-4S dicluster domain NAD_binding_8 PF13450.6 gi|294495627|ref|YP_003542120.1| - 4e-06 27.0 0.0 1e-05 25.6 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_4 PF12800.7 gi|294495627|ref|YP_003542120.1| - 7.4e-06 26.1 34.6 0.011 16.2 3.3 5.2 4 0 0 4 4 4 3 4Fe-4S binding domain HI0933_like PF03486.14 gi|294495627|ref|YP_003542120.1| - 1.7e-05 23.7 0.8 3.1e-05 22.9 0.8 1.4 1 0 0 1 1 1 1 HI0933-like protein K_oxygenase PF13434.6 gi|294495627|ref|YP_003542120.1| - 0.00017 20.9 0.8 0.19 10.8 0.2 3.1 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Fer4_22 PF17179.4 gi|294495627|ref|YP_003542120.1| - 0.00032 21.5 26.0 0.19 12.6 0.5 4.8 3 1 1 4 4 4 3 4Fe-4S dicluster domain AlaDh_PNT_C PF01262.21 gi|294495627|ref|YP_003542120.1| - 0.00062 19.1 0.0 0.0015 17.8 0.0 1.7 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|294495627|ref|YP_003542120.1| - 0.00088 18.6 0.0 0.0021 17.3 0.0 1.6 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|294495627|ref|YP_003542120.1| - 0.00099 18.4 0.4 0.0017 17.6 0.4 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.6 gi|294495627|ref|YP_003542120.1| - 0.0051 17.2 1.2 0.091 13.2 0.1 3.2 3 1 0 3 3 3 1 Putative NAD(P)-binding Fer4_15 PF13459.6 gi|294495627|ref|YP_003542120.1| - 0.019 15.7 30.2 0.085 13.6 0.7 4.8 3 1 1 4 4 4 0 4Fe-4S single cluster domain Lycopene_cycl PF05834.12 gi|294495627|ref|YP_003542120.1| - 0.031 13.3 0.9 0.26 10.3 0.3 2.4 3 0 0 3 3 3 0 Lycopene cyclase protein Fer4_18 PF13746.6 gi|294495627|ref|YP_003542120.1| - 0.035 14.3 16.3 0.19 11.9 4.6 3.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain NAD_binding_9 PF13454.6 gi|294495627|ref|YP_003542120.1| - 0.054 13.5 0.1 5 7.1 0.1 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|294495627|ref|YP_003542120.1| - 0.093 11.6 0.5 0.87 8.4 0.3 2.0 2 0 0 2 2 2 0 Tryptophan halogenase 3HCDH_N PF02737.18 gi|294495627|ref|YP_003542120.1| - 0.13 12.1 0.8 0.38 10.6 0.5 2.0 2 0 0 2 2 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_13 PF13370.6 gi|294495627|ref|YP_003542120.1| - 0.34 11.5 33.7 0.74 10.4 1.5 4.4 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|294495628|ref|YP_003542121.1| - 2.2e-40 134.9 73.6 1.4e-08 34.2 1.7 8.4 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294495628|ref|YP_003542121.1| - 1.1e-32 112.4 54.3 3.5e-11 43.5 5.7 4.8 4 0 0 4 4 4 4 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|294495628|ref|YP_003542121.1| - 1.2e-25 89.4 53.9 4.5e-07 29.9 8.8 6.1 5 2 1 6 6 6 6 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294495628|ref|YP_003542121.1| - 1.1e-24 85.4 76.2 1.1e-06 28.4 1.6 8.5 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_9 PF13187.6 gi|294495628|ref|YP_003542121.1| - 1.2e-24 86.2 54.7 2e-07 31.1 8.5 5.8 1 1 5 7 7 7 7 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294495628|ref|YP_003542121.1| - 1.8e-21 76.0 66.7 5.8e-06 26.3 10.6 7.6 3 3 5 8 8 8 8 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495628|ref|YP_003542121.1| - 2.3e-18 66.9 62.0 0.0022 18.9 1.0 7.9 5 3 3 8 8 8 7 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|294495628|ref|YP_003542121.1| - 1.2e-16 60.8 47.2 1.4e-05 25.4 6.6 6.3 5 3 0 5 5 5 5 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294495628|ref|YP_003542121.1| - 6.4e-13 47.9 72.2 0.00018 21.4 1.8 8.4 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294495628|ref|YP_003542121.1| - 7.6e-10 39.2 63.3 0.0097 16.4 1.0 7.5 3 2 4 7 7 7 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294495628|ref|YP_003542121.1| - 2.5e-09 36.9 69.9 0.00015 22.0 2.9 8.4 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_15 PF13459.6 gi|294495628|ref|YP_003542121.1| - 2.8e-07 31.2 56.2 0.0039 17.9 0.6 8.3 8 1 0 8 8 8 5 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|294495628|ref|YP_003542121.1| - 2.3e-05 25.0 87.9 0.0062 17.4 3.9 8.3 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_13 PF13370.6 gi|294495628|ref|YP_003542121.1| - 0.00024 21.6 73.4 0.14 12.8 1.5 8.5 7 1 1 8 8 8 4 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|294495628|ref|YP_003542121.1| - 0.048 14.5 0.8 0.048 14.5 0.8 8.1 6 2 2 9 9 8 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|294495628|ref|YP_003542121.1| - 0.068 13.4 0.5 0.068 13.4 0.5 7.3 4 2 2 7 7 7 0 4Fe-4S dicluster domain Pectate_lyase PF03211.13 gi|294495628|ref|YP_003542121.1| - 0.15 11.6 0.1 0.15 11.6 0.1 1.6 2 0 0 2 2 2 0 Pectate lyase GvpH PF05455.11 gi|294495628|ref|YP_003542121.1| - 0.17 12.0 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 GvpH ETF_QO PF05187.13 gi|294495628|ref|YP_003542121.1| - 1.6 8.9 18.8 13 6.0 0.8 4.7 3 2 2 5 5 5 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S GatB_N PF02934.15 gi|294495629|ref|YP_003542122.1| - 7.6e-67 225.6 0.1 1e-66 225.1 0.1 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.14 gi|294495629|ref|YP_003542122.1| - 1.2e-16 60.7 0.1 3.5e-16 59.2 0.1 1.8 1 0 0 1 1 1 1 GAD domain GatB_Yqey PF02637.18 gi|294495629|ref|YP_003542122.1| - 5.2e-15 55.6 0.0 9.8e-15 54.7 0.0 1.4 1 0 0 1 1 1 1 GatB domain YqeY PF09424.10 gi|294495629|ref|YP_003542122.1| - 0.0018 18.4 0.1 0.0047 17.0 0.1 1.8 1 0 0 1 1 1 1 Yqey-like protein PD40 PF07676.12 gi|294495630|ref|YP_003542123.1| - 4.6e-34 115.7 16.2 4.1e-07 29.8 0.3 6.3 6 0 0 6 6 6 6 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|294495630|ref|YP_003542123.1| - 7.9e-19 67.6 0.3 8.9e-07 28.0 0.1 4.1 2 1 1 4 4 4 4 Dipeptidyl peptidase IV (DPP IV) N-terminal region Pectate_lyase22 PF14583.6 gi|294495630|ref|YP_003542123.1| - 1.2e-06 27.4 0.1 0.00066 18.5 0.1 3.2 1 1 0 1 1 1 1 Oligogalacturonate lyase DUF5050 PF16472.5 gi|294495630|ref|YP_003542123.1| - 3.3e-06 26.6 0.0 1.2e-05 24.7 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF5050) Gmad1 PF10647.9 gi|294495630|ref|YP_003542123.1| - 0.0012 18.6 0.0 0.19 11.5 0.0 3.1 3 1 0 3 3 3 1 Lipoprotein LpqB beta-propeller domain Peptidase_S9_N PF02897.15 gi|294495630|ref|YP_003542123.1| - 0.02 13.7 0.1 0.06 12.1 0.1 1.8 1 1 0 1 1 1 0 Prolyl oligopeptidase, N-terminal beta-propeller domain CPSase_sm_chain PF00988.22 gi|294495631|ref|YP_003542124.1| - 1.4e-44 151.0 0.0 2.1e-44 150.4 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|294495631|ref|YP_003542124.1| - 3.8e-37 127.9 0.0 5.7e-37 127.3 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|294495631|ref|YP_003542124.1| - 8.7e-07 28.9 0.0 0.0002 21.2 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 CPSase_L_D2 PF02786.17 gi|294495632|ref|YP_003542125.1| - 2.9e-106 353.7 1.8 6.4e-71 238.2 0.3 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|294495632|ref|YP_003542125.1| - 7.8e-41 139.2 0.9 2e-40 137.9 0.9 1.8 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 gi|294495632|ref|YP_003542125.1| - 4.2e-22 78.1 0.6 8.6e-21 73.9 0.0 3.5 5 0 0 5 5 5 1 MGS-like domain ATP-grasp PF02222.22 gi|294495632|ref|YP_003542125.1| - 1.4e-19 70.3 0.2 5.5e-09 35.8 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|294495632|ref|YP_003542125.1| - 1.5e-18 67.1 2.6 2.2e-08 33.9 0.1 3.6 4 0 0 4 4 4 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|294495632|ref|YP_003542125.1| - 2.1e-16 59.8 0.0 2.9e-07 30.3 0.0 3.1 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|294495632|ref|YP_003542125.1| - 5.2e-16 59.1 1.9 8.8e-08 32.4 0.0 2.7 3 0 0 3 3 3 2 ATP-grasp domain GARS_A PF01071.19 gi|294495632|ref|YP_003542125.1| - 4.1e-08 33.2 0.3 0.0054 16.5 0.0 2.5 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|294495632|ref|YP_003542125.1| - 5.4e-07 29.4 0.2 0.0026 17.4 0.0 2.9 2 1 0 2 2 2 2 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.6 gi|294495632|ref|YP_003542125.1| - 0.00081 18.9 0.1 0.1 12.1 0.0 3.1 3 0 0 3 3 3 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|294495632|ref|YP_003542125.1| - 0.0047 16.5 0.1 0.91 9.0 0.1 2.8 2 1 0 2 2 2 1 ATP-grasp domain Arginosuc_synth PF00764.19 gi|294495633|ref|YP_003542126.1| - 4.6e-174 579.2 0.0 5.2e-174 579.1 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|294495633|ref|YP_003542126.1| - 0.00012 21.7 0.0 0.0013 18.3 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|294495633|ref|YP_003542126.1| - 0.0045 16.1 0.0 0.0085 15.2 0.0 1.4 1 0 0 1 1 1 1 NAD synthase Multi_Drug_Res PF00893.19 gi|294495634|ref|YP_003542127.1| - 3.5e-28 98.1 11.2 4.3e-28 97.8 11.2 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein TMEM144 PF07857.12 gi|294495634|ref|YP_003542127.1| - 0.0076 15.2 8.6 0.0097 14.9 8.6 1.2 1 1 0 1 1 1 1 Transmembrane family, TMEM144 of transporters EamA PF00892.20 gi|294495634|ref|YP_003542127.1| - 0.0095 16.1 14.8 0.028 14.6 14.8 1.7 1 1 0 1 1 1 1 EamA-like transporter family SLATT_6 PF18169.1 gi|294495634|ref|YP_003542127.1| - 0.029 14.0 1.0 0.029 14.0 1.0 1.4 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 6 DUF4040 PF13244.6 gi|294495634|ref|YP_003542127.1| - 0.46 10.7 7.7 0.3 11.3 2.6 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4040) DUF5381 PF17353.2 gi|294495634|ref|YP_003542127.1| - 6.4 6.5 12.4 0.11 12.2 2.9 2.2 1 1 2 3 3 3 0 Family of unknown function (DUF5381) DUF3464 PF11947.8 gi|294495634|ref|YP_003542127.1| - 8.1 6.2 6.6 3 7.6 0.9 2.0 1 1 1 2 2 2 0 Photosynthesis affected mutant 68 VWA PF00092.28 gi|294495635|ref|YP_003542128.1| - 2.1e-11 44.4 0.7 3.5e-07 30.6 0.1 2.5 2 0 0 2 2 2 2 von Willebrand factor type A domain GATase1_like PF07090.11 gi|294495635|ref|YP_003542128.1| - 1.1e-07 31.5 0.1 0.0082 15.6 0.0 2.3 2 0 0 2 2 2 2 Putative glutamine amidotransferase VWA_2 PF13519.6 gi|294495635|ref|YP_003542128.1| - 5.3e-06 27.0 0.0 6.2e-05 23.6 0.0 2.6 2 0 0 2 2 2 1 von Willebrand factor type A domain ABC_transp_aux PF09822.9 gi|294495635|ref|YP_003542128.1| - 0.011 15.2 2.2 0.026 14.0 2.2 1.8 1 1 0 1 1 1 0 ABC-type uncharacterized transport system VWA_3 PF13768.6 gi|294495635|ref|YP_003542128.1| - 0.016 15.2 0.0 0.59 10.1 0.0 2.4 2 0 0 2 2 2 0 von Willebrand factor type A domain DUF4350 PF14258.6 gi|294495635|ref|YP_003542128.1| - 0.052 14.0 0.3 6.1 7.4 0.0 3.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) DUF3284 PF11687.8 gi|294495635|ref|YP_003542128.1| - 0.087 12.7 2.0 2.9 7.8 0.2 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3284) GPI-anchored PF10342.9 gi|294495635|ref|YP_003542128.1| - 0.094 13.5 1.0 0.61 10.9 0.1 2.7 2 0 0 2 2 2 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family BatA PF07584.11 gi|294495636|ref|YP_003542129.1| - 7.8e-15 55.0 8.5 7.8e-15 55.0 8.5 2.3 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal ABC_transp_aux PF09822.9 gi|294495636|ref|YP_003542129.1| - 5.8e-05 22.7 0.0 0.00034 20.2 0.0 2.1 1 1 0 1 1 1 1 ABC-type uncharacterized transport system VWA_2 PF13519.6 gi|294495636|ref|YP_003542129.1| - 7.6e-05 23.3 0.3 0.00018 22.1 0.3 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF4350 PF14258.6 gi|294495636|ref|YP_003542129.1| - 0.0078 16.6 1.3 0.14 12.6 0.0 3.4 4 0 0 4 4 4 1 Domain of unknown function (DUF4350) Beta-Casp PF10996.8 gi|294495636|ref|YP_003542129.1| - 0.022 15.1 0.0 0.41 11.0 0.0 2.6 2 0 0 2 2 2 0 Beta-Casp domain DUF4159 PF13709.6 gi|294495636|ref|YP_003542129.1| - 0.026 14.0 0.0 0.072 12.5 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4159) Closter_coat PF01785.17 gi|294495636|ref|YP_003542129.1| - 0.11 11.7 0.1 0.26 10.5 0.1 1.5 1 0 0 1 1 1 0 Closterovirus coat protein Calc_CGRP_IAPP PF00214.19 gi|294495636|ref|YP_003542129.1| - 0.19 12.1 0.0 0.78 10.1 0.0 2.0 2 0 0 2 2 2 0 Calcitonin / CGRP / IAPP family DUF58 PF01882.18 gi|294495637|ref|YP_003542130.1| - 1.9e-21 76.1 0.0 1.3e-20 73.5 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|294495637|ref|YP_003542130.1| - 6.5e-08 33.2 0.0 1.5e-07 32.0 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|294495637|ref|YP_003542130.1| - 1.7e-06 27.6 0.0 3e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.28 gi|294495637|ref|YP_003542130.1| - 0.0036 17.6 0.2 0.0057 16.9 0.2 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_3 PF07726.11 gi|294495638|ref|YP_003542131.1| - 5.9e-62 207.3 0.1 1.2e-61 206.3 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|294495638|ref|YP_003542131.1| - 2.3e-17 62.6 0.0 4.8e-17 61.6 0.0 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|294495638|ref|YP_003542131.1| - 3.7e-11 43.2 0.0 8.4e-11 42.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|294495638|ref|YP_003542131.1| - 1.3e-05 25.6 0.0 2.6e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|294495638|ref|YP_003542131.1| - 5.6e-05 22.3 0.1 0.00015 20.9 0.1 1.8 1 1 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|294495638|ref|YP_003542131.1| - 0.0024 17.6 0.1 0.016 14.9 0.1 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|294495638|ref|YP_003542131.1| - 0.0035 17.1 0.1 0.063 13.0 0.1 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 gi|294495638|ref|YP_003542131.1| - 0.012 16.0 0.0 0.77 10.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain DUF1858 PF08984.11 gi|294495638|ref|YP_003542131.1| - 0.024 14.8 0.1 48 4.2 0.0 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1858) AAA_2 PF07724.14 gi|294495638|ref|YP_003542131.1| - 0.045 13.9 0.0 0.14 12.3 0.1 1.9 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) Mg_chelatase PF01078.21 gi|294495638|ref|YP_003542131.1| - 0.1 12.0 0.0 1.1 8.7 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Fig1 PF12351.8 gi|294495639|ref|YP_003542132.1| - 4.2 7.2 6.8 1.4 8.8 4.2 1.4 2 0 0 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 PDT PF00800.18 gi|294495640|ref|YP_003542133.1| - 2.1e-56 190.7 0.0 2.8e-56 190.2 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|294495640|ref|YP_003542133.1| - 8.6e-10 38.2 0.0 2.7e-09 36.6 0.0 1.9 2 0 0 2 2 2 1 ACT domain Thiamine_BP PF01910.17 gi|294495640|ref|YP_003542133.1| - 0.18 11.8 0.1 0.84 9.6 0.1 2.1 1 1 0 1 1 1 0 Thiamine-binding protein Metalloenzyme PF01676.18 gi|294495641|ref|YP_003542134.1| - 1.7e-12 47.3 0.1 2.4e-12 46.8 0.1 1.2 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.23 gi|294495641|ref|YP_003542134.1| - 7.8e-10 38.6 0.0 5.1e-09 36.0 0.0 2.0 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|294495641|ref|YP_003542134.1| - 6.5e-05 22.7 0.1 0.0004 20.1 0.0 2.0 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase URO-D PF01208.17 gi|294495642|ref|YP_003542135.1| - 2.7e-86 289.9 0.2 3e-86 289.7 0.2 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) RACo_C_ter PF14574.6 gi|294495643|ref|YP_003542136.1| - 2e-69 233.6 4.1 4.1e-69 232.5 4.1 1.5 1 1 0 1 1 1 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|294495643|ref|YP_003542136.1| - 7.6e-10 38.7 0.1 5.8e-09 35.8 0.0 2.2 2 0 0 2 2 2 1 RACo middle region Fer4_9 PF13187.6 gi|294495643|ref|YP_003542136.1| - 1.8e-06 28.0 7.5 3.9e-06 26.9 7.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495643|ref|YP_003542136.1| - 1.1e-05 26.2 8.7 0.0033 18.3 2.0 2.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|294495643|ref|YP_003542136.1| - 6.4e-05 22.6 11.1 0.00095 18.9 3.5 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294495643|ref|YP_003542136.1| - 0.00013 22.5 11.0 0.00048 20.7 11.2 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|294495643|ref|YP_003542136.1| - 0.00054 20.5 4.0 0.072 13.6 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294495643|ref|YP_003542136.1| - 0.00091 19.2 12.5 0.13 12.4 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|294495643|ref|YP_003542136.1| - 0.0011 19.1 12.7 0.0073 16.4 13.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|294495643|ref|YP_003542136.1| - 0.0022 18.1 4.8 0.0045 17.1 4.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|294495643|ref|YP_003542136.1| - 0.0025 18.2 2.8 0.059 13.8 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294495643|ref|YP_003542136.1| - 0.0052 16.8 12.0 0.036 14.1 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|294495643|ref|YP_003542136.1| - 0.0071 16.5 13.3 0.013 15.6 3.2 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294495643|ref|YP_003542136.1| - 0.089 13.3 8.3 2.9 8.6 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|294495643|ref|YP_003542136.1| - 0.36 11.9 18.3 1.7 9.8 5.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|294495643|ref|YP_003542136.1| - 1.3 9.7 6.6 3.4 8.3 1.0 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|294495643|ref|YP_003542136.1| - 7.6 6.8 11.4 35 4.6 11.3 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain cobW PF02492.19 gi|294495644|ref|YP_003542137.1| - 2.6e-39 134.6 0.2 3.9e-39 134.1 0.2 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|294495644|ref|YP_003542137.1| - 0.0018 18.0 3.0 0.017 14.8 0.9 2.5 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|294495644|ref|YP_003542137.1| - 0.14 11.1 2.6 0.13 11.3 0.7 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|294495644|ref|YP_003542137.1| - 0.35 10.8 4.6 1.1 9.2 0.1 2.9 3 1 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B GTP_EFTU PF00009.27 gi|294495644|ref|YP_003542137.1| - 0.56 9.7 5.7 0.96 8.9 2.6 2.4 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain PAS PF00989.25 gi|294495646|ref|YP_003542139.1| - 2.1e-36 124.4 0.5 1.7e-05 24.8 0.0 6.5 6 0 0 6 6 6 6 PAS fold PAS_3 PF08447.12 gi|294495646|ref|YP_003542139.1| - 4.3e-32 110.3 2.6 6.8e-19 68.0 0.3 4.7 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|294495646|ref|YP_003542139.1| - 8.1e-28 96.7 9.4 2.3e-06 27.8 0.0 6.5 6 0 0 6 6 6 6 PAS domain PAS_4 PF08448.10 gi|294495646|ref|YP_003542139.1| - 5.2e-22 78.2 0.0 0.016 15.4 0.0 6.3 6 0 0 6 6 6 6 PAS fold PAS_8 PF13188.7 gi|294495646|ref|YP_003542139.1| - 1.1e-17 63.6 0.0 0.00035 20.5 0.0 5.6 5 0 0 5 5 5 5 PAS domain GAF_2 PF13185.6 gi|294495646|ref|YP_003542139.1| - 1e-10 42.1 0.0 3.6e-08 33.8 0.0 3.3 2 1 0 3 3 3 1 GAF domain GAF_3 PF13492.6 gi|294495646|ref|YP_003542139.1| - 5.7e-09 36.4 0.0 4e-08 33.7 0.0 2.5 3 0 0 3 3 3 1 GAF domain PAS_7 PF12860.7 gi|294495646|ref|YP_003542139.1| - 7.2e-08 32.6 0.5 2 8.6 0.0 6.3 5 2 0 5 5 5 2 PAS fold PAS_11 PF14598.6 gi|294495646|ref|YP_003542139.1| - 9.2e-05 22.5 0.1 0.037 14.1 0.1 3.1 2 0 0 2 2 2 1 PAS domain PAS_10 PF13596.6 gi|294495646|ref|YP_003542139.1| - 0.0015 19.1 0.4 7.1 7.3 0.3 3.9 3 0 0 3 3 3 2 PAS domain DUF2534 PF10749.9 gi|294495646|ref|YP_003542139.1| - 0.15 12.3 0.0 0.34 11.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2534) Cu-binding_MopE PF11617.8 gi|294495646|ref|YP_003542139.1| - 0.2 11.8 1.5 0.38 11.0 1.5 1.4 1 0 0 1 1 1 0 Putative metal-binding motif B12-binding PF02310.19 gi|294495647|ref|YP_003542140.1| - 3.7e-18 65.7 0.2 6.9e-18 64.8 0.2 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|294495647|ref|YP_003542140.1| - 8.4e-15 55.0 0.1 3.8e-14 52.9 0.0 2.1 2 1 0 2 2 2 1 B12 binding domain Cu2_monoox_C PF03712.15 gi|294495647|ref|YP_003542140.1| - 0.069 12.7 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Copper type II ascorbate-dependent monooxygenase, C-terminal domain DNA_pol3_gamma3 PF12169.8 gi|294495647|ref|YP_003542140.1| - 0.082 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III subunits gamma and tau domain III MtaB PF12176.8 gi|294495648|ref|YP_003542141.1| - 4.3e-220 731.3 1.1 4.9e-220 731.1 1.1 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit B12-binding PF02310.19 gi|294495649|ref|YP_003542142.1| - 1.7e-18 66.8 0.2 2.8e-18 66.1 0.2 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|294495649|ref|YP_003542142.1| - 1.1e-13 51.5 0.2 2.9e-13 50.1 0.0 1.8 2 0 0 2 2 2 1 B12 binding domain MtaB PF12176.8 gi|294495650|ref|YP_003542143.1| - 1.1e-235 782.7 2.8 1.2e-235 782.5 2.8 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit Gpr1_Fun34_YaaH PF01184.19 gi|294495651|ref|YP_003542144.1| - 1.4e-29 103.2 22.4 1.8e-29 102.8 22.4 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family ZT_dimer PF16916.5 gi|294495652|ref|YP_003542145.1| - 3.8e-17 62.2 0.6 6.1e-17 61.5 0.6 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Cation_efflux PF01545.21 gi|294495652|ref|YP_003542145.1| - 3.5e-08 33.4 17.3 5.2e-08 32.9 17.3 1.2 1 0 0 1 1 1 1 Cation efflux family DUF4220 PF13968.6 gi|294495652|ref|YP_003542145.1| - 0.054 12.9 0.4 0.12 11.8 0.4 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4220) Hydantoinase_A PF01968.18 gi|294495653|ref|YP_003542146.1| - 1.1e-34 120.1 0.7 1e-32 113.6 0.1 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|294495653|ref|YP_003542146.1| - 1e-30 106.8 6.1 6.1e-28 97.7 1.0 3.5 3 1 0 3 3 3 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|294495653|ref|YP_003542146.1| - 7.3e-08 31.4 1.6 0.0026 16.4 0.1 2.1 2 0 0 2 2 2 2 MutL protein ROK PF00480.20 gi|294495653|ref|YP_003542146.1| - 0.025 14.1 0.2 0.17 11.3 0.0 2.1 2 0 0 2 2 2 0 ROK family Pan_kinase PF03309.14 gi|294495653|ref|YP_003542146.1| - 0.033 14.0 0.2 1.2 8.9 0.1 2.2 2 0 0 2 2 2 0 Type III pantothenate kinase BcrAD_BadFG PF01869.20 gi|294495653|ref|YP_003542146.1| - 0.13 11.7 0.0 0.39 10.2 0.0 1.8 1 1 1 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family HTH_6 PF01418.17 gi|294495653|ref|YP_003542146.1| - 0.16 12.0 0.0 0.36 10.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family Ppx-GppA PF02541.16 gi|294495653|ref|YP_003542146.1| - 1.5 8.2 3.9 1.5 8.2 0.7 2.2 2 0 0 2 2 2 0 Ppx/GppA phosphatase family MFS_1 PF07690.16 gi|294495654|ref|YP_003542147.1| - 4.8e-06 25.7 3.9 4.9e-06 25.7 3.9 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|294495654|ref|YP_003542147.1| - 0.056 11.8 0.5 0.064 11.6 0.5 1.0 1 0 0 1 1 1 0 Transmembrane secretion effector MFS_1 PF07690.16 gi|294495655|ref|YP_003542148.1| - 8e-23 80.9 32.5 9.1e-23 80.7 32.5 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF3556 PF12077.8 gi|294495655|ref|YP_003542148.1| - 0.013 14.0 3.1 0.021 13.3 3.1 1.3 1 0 0 1 1 1 0 Transmembrane protein of unknown function (DUF3556) MerE PF05052.12 gi|294495655|ref|YP_003542148.1| - 0.15 12.0 0.2 0.15 12.0 0.2 2.3 2 0 0 2 2 2 0 MerE protein PGDYG PF14083.6 gi|294495656|ref|YP_003542149.1| - 0.12 12.6 0.0 0.13 12.5 0.0 1.1 1 0 0 1 1 1 0 PGDYG protein SKI PF01202.22 gi|294495657|ref|YP_003542150.1| - 4.1e-34 118.0 0.0 4.6e-34 117.8 0.0 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_18 PF13238.6 gi|294495657|ref|YP_003542150.1| - 8.8e-07 29.5 0.0 1.5e-06 28.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|294495657|ref|YP_003542150.1| - 2.3e-06 27.8 0.0 3.7e-06 27.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 gi|294495657|ref|YP_003542150.1| - 4e-05 23.8 0.3 0.00024 21.3 0.1 2.1 1 1 1 2 2 2 1 Cytidylate kinase-like family dNK PF01712.19 gi|294495657|ref|YP_003542150.1| - 0.00019 21.4 0.4 0.22 11.4 0.0 2.1 2 0 0 2 2 2 2 Deoxynucleoside kinase AAA_17 PF13207.6 gi|294495657|ref|YP_003542150.1| - 0.00045 20.7 0.4 0.0011 19.5 0.2 1.8 1 1 1 2 2 2 1 AAA domain Cytidylate_kin PF02224.18 gi|294495657|ref|YP_003542150.1| - 0.00066 19.5 0.2 0.0028 17.4 0.0 2.0 2 0 0 2 2 2 1 Cytidylate kinase CoaE PF01121.20 gi|294495657|ref|YP_003542150.1| - 0.0062 16.2 0.8 0.011 15.4 0.1 1.8 2 1 1 3 3 3 1 Dephospho-CoA kinase AAA PF00004.29 gi|294495657|ref|YP_003542150.1| - 0.0065 16.9 0.2 0.01 16.3 0.2 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|294495657|ref|YP_003542150.1| - 0.014 14.6 3.7 0.045 12.9 0.5 2.4 2 1 0 2 2 2 0 NB-ARC domain AAA_16 PF13191.6 gi|294495657|ref|YP_003542150.1| - 0.064 13.6 0.3 0.11 12.9 0.3 1.5 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|294495657|ref|YP_003542150.1| - 0.11 12.4 0.1 0.22 11.4 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_5 PF07728.14 gi|294495657|ref|YP_003542150.1| - 0.11 12.5 0.1 0.46 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|294495657|ref|YP_003542150.1| - 0.16 12.0 1.6 0.35 10.9 0.4 2.2 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|294495657|ref|YP_003542150.1| - 0.17 12.1 0.6 0.3 11.3 0.6 1.7 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|294495657|ref|YP_003542150.1| - 0.4 11.2 1.8 0.71 10.4 1.7 1.7 1 1 0 1 1 1 0 ABC transporter DUF711 PF05167.12 gi|294495658|ref|YP_003542151.1| - 6.2e-182 605.0 10.5 7.7e-182 604.7 10.5 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) DUF4444 PF14563.6 gi|294495658|ref|YP_003542151.1| - 0.1 12.3 0.2 8.4 6.1 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4444) ACT_6 PF13740.6 gi|294495659|ref|YP_003542152.1| - 4.5e-14 52.2 0.7 5.1e-14 52.0 0.7 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|294495659|ref|YP_003542152.1| - 4e-08 32.9 0.5 4.9e-08 32.6 0.5 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|294495659|ref|YP_003542152.1| - 5.2e-05 23.8 1.4 6.9e-05 23.4 0.9 1.5 2 0 0 2 2 2 1 ACT domain ACT_7 PF13840.6 gi|294495659|ref|YP_003542152.1| - 0.0053 16.5 0.3 0.0077 16.0 0.3 1.3 1 0 0 1 1 1 1 ACT domain DUF3921 PF13060.6 gi|294495659|ref|YP_003542152.1| - 0.059 13.4 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3921) DUF4177 PF13783.6 gi|294495660|ref|YP_003542153.1| - 8.2e-05 22.8 0.0 0.00011 22.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) DUF2812 PF11193.8 gi|294495660|ref|YP_003542153.1| - 0.088 13.0 0.1 0.11 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2812) DUF2115 PF09888.9 gi|294495661|ref|YP_003542154.1| - 4.8e-51 173.5 2.1 5.4e-51 173.4 2.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) AvrPtoB-E3_ubiq PF09046.10 gi|294495661|ref|YP_003542154.1| - 0.13 12.5 0.0 0.21 11.9 0.0 1.3 1 0 0 1 1 1 0 AvrPtoB E3 ubiquitin ligase PMSR PF01625.21 gi|294495662|ref|YP_003542155.1| - 3e-67 225.6 0.7 3.6e-67 225.3 0.7 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase HSP20 PF00011.21 gi|294495663|ref|YP_003542156.1| - 0.01 16.0 0.1 0.015 15.4 0.1 1.3 1 0 0 1 1 1 1 Hsp20/alpha crystallin family zf-CSL PF05207.13 gi|294495664|ref|YP_003542157.1| - 0.0024 17.6 2.8 0.0031 17.2 2.0 1.6 2 0 0 2 2 2 1 CSL zinc finger TM1586_NiRdase PF14512.6 gi|294495664|ref|YP_003542157.1| - 0.032 13.8 0.3 0.039 13.5 0.3 1.1 1 0 0 1 1 1 0 Putative TM nitroreductase DUF2551 PF10826.8 gi|294495665|ref|YP_003542158.1| - 2.5e-34 117.3 0.9 3e-34 117.1 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.16 gi|294495665|ref|YP_003542158.1| - 0.0014 19.0 0.1 0.002 18.5 0.1 1.3 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.19 gi|294495666|ref|YP_003542159.1| - 0.071 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TraE PF05309.11 gi|294495666|ref|YP_003542159.1| - 0.079 12.3 0.1 0.097 12.0 0.1 1.1 1 0 0 1 1 1 0 TraE protein HisKA_2 PF07568.12 gi|294495667|ref|YP_003542160.1| - 3.1e-27 94.5 0.8 3.1e-27 94.5 0.8 2.4 3 0 0 3 3 3 1 Histidine kinase HATPase_c PF02518.26 gi|294495667|ref|YP_003542160.1| - 1.4e-05 25.5 0.9 0.00011 22.7 0.9 2.3 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|294495667|ref|YP_003542160.1| - 0.00011 22.1 0.0 0.00028 20.8 0.0 1.7 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|294495667|ref|YP_003542160.1| - 0.0005 20.7 0.0 0.0019 18.8 0.0 2.0 2 0 0 2 2 2 1 HWE histidine kinase DUF3843 PF12954.7 gi|294495667|ref|YP_003542160.1| - 0.005 15.9 1.0 0.0071 15.4 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3843) SPOB_a PF14689.6 gi|294495667|ref|YP_003542160.1| - 0.029 14.1 0.0 0.12 12.0 0.0 2.2 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain CENP-H PF05837.12 gi|294495667|ref|YP_003542160.1| - 0.4 11.1 6.2 0.83 10.1 6.2 1.5 1 0 0 1 1 1 0 Centromere protein H (CENP-H) PPDK_N PF01326.19 gi|294495668|ref|YP_003542161.1| - 1.9e-118 395.5 0.0 3.1e-118 394.8 0.0 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|294495668|ref|YP_003542161.1| - 5.8e-63 212.7 0.0 9.2e-63 212.1 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|294495668|ref|YP_003542161.1| - 6.4e-25 86.7 0.3 2.4e-24 84.8 0.3 2.0 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain Peptidase_S15 PF02129.18 gi|294495669|ref|YP_003542162.1| - 1.1e-62 212.1 0.5 1.5e-62 211.7 0.5 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) PepX_C PF08530.10 gi|294495669|ref|YP_003542162.1| - 6.9e-50 170.1 0.0 9.9e-50 169.6 0.0 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Hydrolase_4 PF12146.8 gi|294495669|ref|YP_003542162.1| - 3.1e-07 29.9 0.0 1e-06 28.2 0.0 1.8 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|294495669|ref|YP_003542162.1| - 5.2e-07 29.4 0.1 4.9e-05 22.9 0.0 2.3 2 0 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|294495669|ref|YP_003542162.1| - 1.9e-05 24.4 0.0 4e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|294495669|ref|YP_003542162.1| - 3.8e-05 24.4 0.1 6.9e-05 23.5 0.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.12 gi|294495669|ref|YP_003542162.1| - 0.00029 19.6 0.0 0.00074 18.3 0.0 1.7 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) DLH PF01738.18 gi|294495669|ref|YP_003542162.1| - 0.0043 16.6 0.0 0.011 15.2 0.0 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family BAAT_C PF08840.11 gi|294495669|ref|YP_003542162.1| - 0.011 15.6 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal CPSase_L_D2 PF02786.17 gi|294495670|ref|YP_003542163.1| - 2.2e-09 37.2 0.0 3.9e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.6 gi|294495670|ref|YP_003542163.1| - 6e-08 32.4 0.0 1.6e-07 31.0 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|294495670|ref|YP_003542163.1| - 0.0055 16.4 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ABC_tran PF00005.27 gi|294495671|ref|YP_003542164.1| - 1.4e-20 74.2 0.0 4.3e-20 72.6 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|294495671|ref|YP_003542164.1| - 1.4e-05 25.1 0.1 0.0017 18.3 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|294495671|ref|YP_003542164.1| - 0.00011 21.8 0.2 0.029 13.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|294495671|ref|YP_003542164.1| - 0.0011 18.7 0.3 0.011 15.4 0.0 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|294495671|ref|YP_003542164.1| - 0.0031 18.1 1.5 0.0039 17.7 0.1 1.8 2 1 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|294495671|ref|YP_003542164.1| - 0.0064 16.4 0.2 0.013 15.4 0.1 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_15 PF13175.6 gi|294495671|ref|YP_003542164.1| - 0.068 12.9 0.2 0.18 11.5 0.1 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_27 PF13514.6 gi|294495671|ref|YP_003542164.1| - 0.076 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|294495671|ref|YP_003542164.1| - 0.22 11.9 0.0 1.7 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain UPF0051 PF01458.17 gi|294495672|ref|YP_003542165.1| - 6.7e-56 189.4 0.5 8.5e-56 189.1 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) DUF3618 PF12277.8 gi|294495672|ref|YP_003542165.1| - 0.15 12.4 0.3 15 6.0 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) FMN_red PF03358.15 gi|294495673|ref|YP_003542166.1| - 6.5e-18 64.9 0.0 8.4e-18 64.6 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|294495673|ref|YP_003542166.1| - 1.4e-05 24.9 0.0 2.3e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold NadA PF02445.16 gi|294495674|ref|YP_003542167.1| - 2.7e-117 391.2 8.5 3.1e-117 391.0 8.5 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein HMA PF00403.26 gi|294495675|ref|YP_003542168.1| - 6.1e-17 61.8 3.4 6.8e-17 61.7 3.4 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Thioredoxin_3 PF13192.6 gi|294495675|ref|YP_003542168.1| - 0.028 14.5 2.2 0.034 14.2 2.2 1.3 1 1 0 1 1 1 0 Thioredoxin domain E1-E2_ATPase PF00122.20 gi|294495676|ref|YP_003542169.1| - 3.9e-59 199.2 3.6 1e-58 197.9 2.9 2.1 2 0 0 2 2 2 1 E1-E2 ATPase HMA PF00403.26 gi|294495676|ref|YP_003542169.1| - 8.1e-49 163.9 2.8 3.1e-17 62.8 0.1 4.0 3 0 0 3 3 3 3 Heavy-metal-associated domain Hydrolase PF00702.26 gi|294495676|ref|YP_003542169.1| - 3.4e-48 164.7 4.9 7.4e-48 163.6 4.5 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|294495676|ref|YP_003542169.1| - 8.5e-07 29.0 5.0 7.3e-06 25.9 1.5 2.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|294495676|ref|YP_003542169.1| - 0.0025 18.2 0.2 0.056 13.8 0.1 2.7 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase TusA PF01206.17 gi|294495676|ref|YP_003542169.1| - 0.006 16.4 0.1 2.5 8.0 0.0 3.4 2 1 0 2 2 2 1 Sulfurtransferase TusA DEK_C PF08766.11 gi|294495676|ref|YP_003542169.1| - 0.012 15.5 0.0 0.03 14.2 0.0 1.6 1 0 0 1 1 1 0 DEK C terminal domain Hydrolase_6 PF13344.6 gi|294495676|ref|YP_003542169.1| - 0.021 14.9 0.0 0.25 11.5 0.0 2.7 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF211 PF02680.14 gi|294495676|ref|YP_003542169.1| - 0.041 14.0 1.9 2.5 8.3 0.0 4.0 3 2 1 4 4 4 0 Uncharacterized ArCR, COG1888 RRM_3 PF08777.11 gi|294495676|ref|YP_003542169.1| - 0.053 13.6 0.1 1.7 8.7 0.0 3.1 3 0 0 3 3 3 0 RNA binding motif HAD_2 PF13419.6 gi|294495676|ref|YP_003542169.1| - 0.056 13.5 0.1 0.26 11.3 0.1 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase CDCA PF18484.1 gi|294495676|ref|YP_003542169.1| - 0.083 12.8 0.3 4.1 7.2 0.1 3.0 2 1 1 3 3 3 0 Cadmium carbonic anhydrase repeat Fer2_BFD PF04324.15 gi|294495676|ref|YP_003542169.1| - 0.22 11.9 2.5 38 4.7 0.0 3.8 3 0 0 3 3 3 0 BFD-like [2Fe-2S] binding domain DHHC PF01529.20 gi|294495677|ref|YP_003542170.1| - 0.2 11.8 0.7 0.21 11.7 0.7 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase Cupin_2 PF07883.11 gi|294495678|ref|YP_003542171.1| - 1.1e-16 60.3 0.0 1.7e-16 59.7 0.0 1.3 1 0 0 1 1 1 1 Cupin domain HTH_19 PF12844.7 gi|294495678|ref|YP_003542171.1| - 3.1e-11 43.1 0.1 5.5e-11 42.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|294495678|ref|YP_003542171.1| - 2.6e-07 30.6 0.1 3.8e-07 30.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|294495678|ref|YP_003542171.1| - 3.9e-06 27.1 0.0 5.7e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.19 gi|294495678|ref|YP_003542171.1| - 0.00032 20.6 0.0 0.00046 20.1 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|294495678|ref|YP_003542171.1| - 0.0025 17.7 0.0 0.0037 17.2 0.0 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase EutQ PF06249.12 gi|294495678|ref|YP_003542171.1| - 0.0041 16.9 0.0 0.0072 16.1 0.0 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Cupin_3 PF05899.12 gi|294495678|ref|YP_003542171.1| - 0.0051 16.5 0.0 0.0092 15.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Beta_helix PF13229.6 gi|294495678|ref|YP_003542171.1| - 0.024 14.5 0.1 0.033 14.0 0.1 1.3 1 0 0 1 1 1 0 Right handed beta helix region Cupin_1 PF00190.22 gi|294495678|ref|YP_003542171.1| - 0.03 13.9 0.0 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 Cupin CENP-C_C PF11699.8 gi|294495678|ref|YP_003542171.1| - 0.039 14.2 0.1 0.075 13.3 0.1 1.4 1 0 0 1 1 1 0 Mif2/CENP-C like AMP-binding PF00501.28 gi|294495679|ref|YP_003542172.1| - 6.9e-71 239.1 0.0 7.9e-71 238.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|294495679|ref|YP_003542172.1| - 6.3e-05 23.9 0.1 0.00016 22.6 0.1 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Fer4_7 PF12838.7 gi|294495680|ref|YP_003542173.1| - 1.4e-09 38.4 11.6 1.9e-09 38.0 11.6 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294495680|ref|YP_003542173.1| - 1.8e-07 31.2 22.7 7.1e-07 29.3 11.0 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294495680|ref|YP_003542173.1| - 4.3e-07 29.9 24.1 2.2e-06 27.7 12.1 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|294495680|ref|YP_003542173.1| - 5.2e-07 29.7 9.3 1.6e-06 28.2 9.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|294495680|ref|YP_003542173.1| - 1e-06 29.5 5.7 0.0062 17.3 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495680|ref|YP_003542173.1| - 2e-05 25.4 13.8 0.00074 20.4 2.1 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|294495680|ref|YP_003542173.1| - 3.5e-05 23.6 12.2 0.022 14.9 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|294495680|ref|YP_003542173.1| - 7e-05 23.3 6.9 0.051 14.1 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|294495680|ref|YP_003542173.1| - 8.8e-05 22.4 16.8 0.011 15.8 4.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|294495680|ref|YP_003542173.1| - 8.8e-05 23.2 4.3 0.041 14.6 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4 PF00037.27 gi|294495680|ref|YP_003542173.1| - 0.00012 21.8 17.5 0.00092 18.9 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294495680|ref|YP_003542173.1| - 0.00025 21.5 12.6 0.026 15.1 13.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294495680|ref|YP_003542173.1| - 0.00076 19.8 15.5 0.067 13.7 3.6 2.4 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|294495680|ref|YP_003542173.1| - 0.0042 17.9 16.9 0.1 13.6 4.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|294495680|ref|YP_003542173.1| - 0.017 15.5 14.9 0.49 10.9 3.9 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|294495680|ref|YP_003542173.1| - 0.31 11.3 9.3 1.7 8.9 1.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|294495681|ref|YP_003542174.1| - 1.3e-53 182.1 0.0 1.6e-53 181.8 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|294495681|ref|YP_003542174.1| - 1.3e-26 92.8 0.0 2.7e-26 91.9 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|294495681|ref|YP_003542174.1| - 6.3e-06 26.1 0.0 1.3e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain IMPDH PF00478.25 gi|294495681|ref|YP_003542174.1| - 0.048 12.7 0.0 0.21 10.5 0.0 1.9 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain POR PF01558.18 gi|294495682|ref|YP_003542175.1| - 1.4e-35 122.9 0.1 2.4e-35 122.2 0.1 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|294495682|ref|YP_003542175.1| - 2.4e-22 79.4 0.1 4.3e-22 78.5 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YtpI PF14007.6 gi|294495683|ref|YP_003542176.1| - 0.76 9.9 9.1 0.13 12.4 2.5 2.8 3 0 0 3 3 3 0 YtpI-like protein Acetyltransf_5 PF13444.6 gi|294495684|ref|YP_003542177.1| - 0.18 12.5 0.0 0.25 12.1 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Spo7_2_N PF15407.6 gi|294495684|ref|YP_003542177.1| - 0.18 11.4 0.0 0.24 11.0 0.0 1.1 1 0 0 1 1 1 0 Sporulation protein family 7 Peptidase_S8 PF00082.22 gi|294495685|ref|YP_003542178.1| - 2.1e-49 168.4 6.7 2.1e-49 168.4 6.7 2.2 2 0 0 2 2 2 1 Subtilase family Big_7 PF17957.1 gi|294495685|ref|YP_003542178.1| - 1.4e-05 25.7 28.3 0.0013 19.5 2.5 6.0 4 2 0 4 4 4 3 Bacterial Ig domain fn3 PF00041.21 gi|294495685|ref|YP_003542178.1| - 0.0051 17.1 1.2 0.022 15.1 1.2 2.2 1 1 0 1 1 1 1 Fibronectin type III domain DUF2846 PF11008.8 gi|294495685|ref|YP_003542178.1| - 0.047 13.7 0.1 0.18 11.8 0.1 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2846) Big_6 PF17936.1 gi|294495685|ref|YP_003542178.1| - 1 9.7 10.8 2.9 8.2 0.1 4.4 5 0 0 5 5 5 0 Bacterial Ig domain Response_reg PF00072.24 gi|294495686|ref|YP_003542179.1| - 5.7e-18 65.1 0.1 9.9e-18 64.3 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|294495686|ref|YP_003542179.1| - 2.4e-14 53.3 0.0 3.7e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|294495686|ref|YP_003542179.1| - 2.5e-12 47.0 0.0 3.9e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|294495686|ref|YP_003542179.1| - 5.6e-12 45.9 0.0 7.5e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|294495686|ref|YP_003542179.1| - 4e-05 23.5 0.0 9.7e-05 22.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_6 PF08348.11 gi|294495686|ref|YP_003542179.1| - 0.051 13.4 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 YheO-like PAS domain Usg PF06233.12 gi|294495686|ref|YP_003542179.1| - 0.062 13.5 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 Usg-like family PmbA_TldD PF01523.16 gi|294495687|ref|YP_003542180.1| - 5.2e-53 180.7 2.4 7.9e-53 180.1 2.4 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|294495688|ref|YP_003542181.1| - 2.3e-71 240.9 0.1 3.1e-71 240.5 0.1 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Lon_C PF05362.13 gi|294495689|ref|YP_003542182.1| - 1.4e-32 112.9 4.5 2.2e-32 112.2 4.5 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|294495689|ref|YP_003542182.1| - 1.5e-25 90.0 0.1 3.3e-17 62.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|294495689|ref|YP_003542182.1| - 4.7e-17 62.1 0.2 4e-11 42.7 0.2 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|294495689|ref|YP_003542182.1| - 1.7e-14 53.8 0.0 1.8e-07 31.0 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|294495689|ref|YP_003542182.1| - 7.3e-11 42.2 0.0 0.00051 20.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|294495689|ref|YP_003542182.1| - 3.2e-09 36.7 0.2 7.2e-09 35.5 0.2 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.29 gi|294495689|ref|YP_003542182.1| - 3.1e-07 30.9 0.0 0.0076 16.7 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|294495689|ref|YP_003542182.1| - 2e-06 27.1 0.6 0.046 12.8 0.0 3.0 3 0 0 3 3 3 2 MCM P-loop domain AAA_22 PF13401.6 gi|294495689|ref|YP_003542182.1| - 2.4e-05 24.6 0.0 0.00053 20.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|294495689|ref|YP_003542182.1| - 2.9e-05 23.9 0.0 0.015 15.0 0.0 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|294495689|ref|YP_003542182.1| - 6.4e-05 22.6 0.0 0.00048 19.7 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region Sigma54_activ_2 PF14532.6 gi|294495689|ref|YP_003542182.1| - 0.00011 22.4 0.0 0.34 11.0 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|294495689|ref|YP_003542182.1| - 0.00014 21.7 0.0 0.78 9.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|294495689|ref|YP_003542182.1| - 0.00018 21.8 0.7 0.0042 17.4 0.7 2.7 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|294495689|ref|YP_003542182.1| - 0.00038 19.8 0.0 0.63 9.2 0.1 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_30 PF13604.6 gi|294495689|ref|YP_003542182.1| - 0.0012 18.6 0.0 0.0087 15.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|294495689|ref|YP_003542182.1| - 0.004 16.6 0.0 0.0084 15.6 0.0 1.5 1 0 0 1 1 1 1 PhoH-like protein Parvo_NS1 PF01057.17 gi|294495689|ref|YP_003542182.1| - 0.0054 15.8 0.0 0.01 15.0 0.0 1.3 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_16 PF13191.6 gi|294495689|ref|YP_003542182.1| - 0.011 16.1 0.0 0.11 12.8 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|294495689|ref|YP_003542182.1| - 0.013 15.7 0.0 0.03 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|294495689|ref|YP_003542182.1| - 0.016 14.6 0.1 0.053 12.9 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family IstB_IS21 PF01695.17 gi|294495689|ref|YP_003542182.1| - 0.019 14.7 0.0 0.06 13.1 0.0 1.8 2 0 0 2 2 1 0 IstB-like ATP binding protein Birna_VP4 PF01768.16 gi|294495689|ref|YP_003542182.1| - 0.022 14.6 1.7 0.21 11.4 0.4 2.6 2 1 0 2 2 2 0 Birnavirus VP4 protein AAA_18 PF13238.6 gi|294495689|ref|YP_003542182.1| - 0.024 15.2 0.0 0.091 13.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_PrkA PF08298.11 gi|294495689|ref|YP_003542182.1| - 0.028 13.3 0.0 1.8 7.4 0.0 2.3 2 0 0 2 2 2 0 PrkA AAA domain DUF815 PF05673.13 gi|294495689|ref|YP_003542182.1| - 0.031 13.5 0.0 0.061 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|294495689|ref|YP_003542182.1| - 0.037 14.6 0.0 0.093 13.2 0.0 1.7 1 0 0 1 1 1 0 ABC transporter TrwB_AAD_bind PF10412.9 gi|294495689|ref|YP_003542182.1| - 0.048 12.6 0.0 0.098 11.6 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_2 PF07724.14 gi|294495689|ref|YP_003542182.1| - 0.07 13.2 0.1 12 6.0 0.0 2.7 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) NACHT PF05729.12 gi|294495689|ref|YP_003542182.1| - 0.071 13.0 0.0 0.2 11.6 0.0 1.8 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 gi|294495689|ref|YP_003542182.1| - 0.072 13.3 0.0 0.18 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.7 gi|294495689|ref|YP_003542182.1| - 0.1 11.5 0.0 0.19 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain ResIII PF04851.15 gi|294495689|ref|YP_003542182.1| - 0.17 11.9 0.2 0.88 9.6 0.0 2.3 2 1 1 3 3 2 0 Type III restriction enzyme, res subunit DUF1676 PF07898.13 gi|294495689|ref|YP_003542182.1| - 0.34 10.9 3.1 0.19 11.7 0.8 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF1676) ATPase PF06745.13 gi|294495690|ref|YP_003542183.1| - 1.5e-47 161.9 0.2 1.7e-47 161.7 0.2 1.0 1 0 0 1 1 1 1 KaiC DnaB_C PF03796.15 gi|294495690|ref|YP_003542183.1| - 2e-05 24.1 0.0 2.8e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|294495690|ref|YP_003542183.1| - 0.0002 20.1 0.1 0.00037 19.2 0.1 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.21 gi|294495690|ref|YP_003542183.1| - 0.00031 20.3 0.1 0.00051 19.6 0.1 1.4 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ResIII PF04851.15 gi|294495690|ref|YP_003542183.1| - 0.00036 20.6 0.1 0.00073 19.6 0.1 1.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|294495690|ref|YP_003542183.1| - 0.00038 20.9 0.0 0.00051 20.5 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.9 gi|294495690|ref|YP_003542183.1| - 0.00081 18.7 0.0 0.0014 17.9 0.0 1.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.15 gi|294495690|ref|YP_003542183.1| - 0.00095 19.1 0.4 0.0032 17.4 0.4 1.8 1 1 0 1 1 1 1 NTPase AAA_22 PF13401.6 gi|294495690|ref|YP_003542183.1| - 0.0024 18.1 0.9 0.036 14.3 0.9 2.2 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|294495690|ref|YP_003542183.1| - 0.0028 17.4 0.6 0.0089 15.8 0.6 1.9 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|294495690|ref|YP_003542183.1| - 0.003 16.7 0.0 0.0047 16.0 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_24 PF13479.6 gi|294495690|ref|YP_003542183.1| - 0.0033 17.2 0.3 0.0063 16.3 0.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|294495690|ref|YP_003542183.1| - 0.0034 17.4 0.0 0.012 15.6 0.0 2.0 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|294495690|ref|YP_003542183.1| - 0.0038 17.0 0.1 0.011 15.5 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein DEAD PF00270.29 gi|294495690|ref|YP_003542183.1| - 0.0041 16.9 0.7 0.025 14.4 0.7 1.9 1 1 0 1 1 1 1 DEAD/DEAH box helicase Viral_helicase1 PF01443.18 gi|294495690|ref|YP_003542183.1| - 0.0056 16.5 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase KdpD PF02702.17 gi|294495690|ref|YP_003542183.1| - 0.0058 16.1 0.7 0.15 11.5 0.4 2.5 1 1 1 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain AAA_25 PF13481.6 gi|294495690|ref|YP_003542183.1| - 0.0061 16.2 0.1 0.012 15.2 0.1 1.6 1 1 0 1 1 1 1 AAA domain DAP3 PF10236.9 gi|294495690|ref|YP_003542183.1| - 0.0086 15.3 0.0 0.023 13.9 0.0 1.6 2 0 0 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 AAA_19 PF13245.6 gi|294495690|ref|YP_003542183.1| - 0.012 15.9 0.5 0.019 15.3 0.5 1.4 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|294495690|ref|YP_003542183.1| - 0.015 14.8 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 TIP49 PF06068.13 gi|294495690|ref|YP_003542183.1| - 0.028 13.6 0.9 0.2 10.9 0.3 2.0 1 1 1 2 2 2 0 TIP49 P-loop domain AAA PF00004.29 gi|294495690|ref|YP_003542183.1| - 0.031 14.7 0.3 0.081 13.3 0.3 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|294495690|ref|YP_003542183.1| - 0.032 14.6 0.0 0.18 12.2 0.0 2.1 2 0 0 2 2 2 0 RNA helicase PhoH PF02562.16 gi|294495690|ref|YP_003542183.1| - 0.036 13.5 0.8 2.4 7.6 0.2 2.2 1 1 1 2 2 2 0 PhoH-like protein NACHT PF05729.12 gi|294495690|ref|YP_003542183.1| - 0.045 13.7 0.1 0.11 12.4 0.1 1.7 1 1 0 1 1 1 0 NACHT domain cobW PF02492.19 gi|294495690|ref|YP_003542183.1| - 0.046 13.3 0.1 0.13 11.9 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|294495690|ref|YP_003542183.1| - 0.051 13.6 0.1 0.19 11.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|294495690|ref|YP_003542183.1| - 0.059 12.3 0.1 0.094 11.6 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Sigma54_activ_2 PF14532.6 gi|294495690|ref|YP_003542183.1| - 0.074 13.2 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|294495690|ref|YP_003542183.1| - 0.094 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|294495690|ref|YP_003542183.1| - 0.1 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain MeaB PF03308.16 gi|294495690|ref|YP_003542183.1| - 0.1 11.6 0.2 0.53 9.2 0.2 1.9 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|294495690|ref|YP_003542183.1| - 0.11 13.0 0.0 0.17 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain CobU PF02283.16 gi|294495690|ref|YP_003542183.1| - 0.13 11.8 0.0 1.1 8.9 0.0 2.0 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Helicase_RecD PF05127.14 gi|294495690|ref|YP_003542183.1| - 0.15 11.9 0.1 0.96 9.3 0.1 2.0 1 1 0 1 1 1 0 Helicase MetOD1 PF18546.1 gi|294495691|ref|YP_003542184.1| - 2.4e-50 170.5 0.9 3.4e-50 170.0 0.9 1.2 1 0 0 1 1 1 1 Metanogen output domain 1 Response_reg PF00072.24 gi|294495691|ref|YP_003542184.1| - 1.7e-31 108.7 0.8 3e-31 107.9 0.8 1.4 1 0 0 1 1 1 1 Response regulator receiver domain V4R PF02830.18 gi|294495691|ref|YP_003542184.1| - 0.028 14.5 0.1 0.057 13.4 0.1 1.5 1 0 0 1 1 1 0 V4R domain ComFB PF10719.9 gi|294495691|ref|YP_003542184.1| - 0.028 14.5 0.0 0.075 13.1 0.0 1.7 1 0 0 1 1 1 0 Late competence development protein ComFB ATC_hydrolase PF14196.6 gi|294495691|ref|YP_003542184.1| - 0.076 13.8 2.4 0.24 12.2 2.4 1.9 1 1 0 1 1 1 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase AIRC PF00731.20 gi|294495692|ref|YP_003542185.1| - 4.9e-44 149.5 0.9 5.4e-44 149.4 0.9 1.0 1 0 0 1 1 1 1 AIR carboxylase CM_2 PF01817.21 gi|294495693|ref|YP_003542186.1| - 3.5e-16 59.3 4.4 3.9e-16 59.1 4.4 1.0 1 0 0 1 1 1 1 Chorismate mutase type II Osmo_CC PF08946.10 gi|294495693|ref|YP_003542186.1| - 0.066 13.5 1.5 0.14 12.4 1.5 1.6 1 0 0 1 1 1 0 Osmosensory transporter coiled coil GHMP_kinases_N PF00288.26 gi|294495694|ref|YP_003542187.1| - 1.1e-12 47.9 0.5 2.2e-12 47.0 0.5 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|294495694|ref|YP_003542187.1| - 0.0076 16.6 0.1 0.03 14.7 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal Hydantoinase_A PF01968.18 gi|294495696|ref|YP_003542189.1| - 2.3e-33 115.7 3.1 1.1e-32 113.5 0.5 2.7 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|294495696|ref|YP_003542189.1| - 7.7e-31 107.2 4.3 5.2e-27 94.7 0.5 3.4 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|294495696|ref|YP_003542189.1| - 2.5e-10 39.6 1.1 6e-05 21.8 0.1 2.2 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.20 gi|294495696|ref|YP_003542189.1| - 0.0035 16.9 0.9 0.17 11.4 0.1 2.9 3 0 0 3 3 3 1 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.20 gi|294495696|ref|YP_003542189.1| - 0.0086 15.6 0.3 0.025 14.1 0.0 1.9 2 0 0 2 2 2 1 ROK family StbA PF06406.11 gi|294495696|ref|YP_003542189.1| - 0.011 15.0 0.0 0.025 13.8 0.0 1.5 1 0 0 1 1 1 0 StbA protein Arch_flagellin PF01917.16 gi|294495696|ref|YP_003542189.1| - 0.053 13.7 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Archaebacterial flagellin MTS PF05175.14 gi|294495697|ref|YP_003542190.1| - 2.5e-09 36.9 0.0 5.5e-07 29.3 0.0 2.1 2 0 0 2 2 2 2 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|294495697|ref|YP_003542190.1| - 5.3e-06 26.3 0.0 7.3e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|294495697|ref|YP_003542190.1| - 7.8e-06 26.5 0.0 0.00019 22.1 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|294495697|ref|YP_003542190.1| - 7.5e-05 22.4 0.0 0.00011 21.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_11 PF08241.12 gi|294495697|ref|YP_003542190.1| - 0.0008 20.0 0.0 0.09 13.4 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|294495697|ref|YP_003542190.1| - 0.001 19.8 0.0 0.01 16.5 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain PCMT PF01135.19 gi|294495697|ref|YP_003542190.1| - 0.002 17.9 0.0 0.0078 16.0 0.0 1.9 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|294495697|ref|YP_003542190.1| - 0.0099 15.7 0.0 0.068 13.0 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|294495697|ref|YP_003542190.1| - 0.03 13.7 0.1 0.071 12.5 0.1 1.6 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|294495697|ref|YP_003542190.1| - 0.05 12.9 0.0 2.1 7.6 0.0 2.1 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase Eco57I PF07669.11 gi|294495697|ref|YP_003542190.1| - 0.13 12.8 0.0 0.18 12.3 0.0 1.3 1 0 0 1 1 1 0 Eco57I restriction-modification methylase DUF2431 PF10354.9 gi|294495697|ref|YP_003542190.1| - 0.14 12.4 0.0 0.19 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2431) RrnaAD PF00398.20 gi|294495698|ref|YP_003542191.1| - 2.5e-56 190.7 0.0 3.2e-56 190.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|294495698|ref|YP_003542191.1| - 8.5e-06 26.4 0.0 1.4e-05 25.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|294495698|ref|YP_003542191.1| - 0.00041 20.0 0.0 0.00065 19.4 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_11 PF08241.12 gi|294495698|ref|YP_003542191.1| - 0.00072 20.2 0.0 0.0012 19.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|294495698|ref|YP_003542191.1| - 0.0012 18.7 0.1 0.0017 18.1 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PDZ_6 PF17820.1 gi|294495698|ref|YP_003542191.1| - 0.029 14.2 0.5 0.029 14.2 0.5 1.7 2 0 0 2 2 2 0 PDZ domain PDZ PF00595.24 gi|294495698|ref|YP_003542191.1| - 0.031 14.6 0.2 0.063 13.6 0.2 1.5 1 0 0 1 1 1 0 PDZ domain Methyltransf_4 PF02390.17 gi|294495698|ref|YP_003542191.1| - 0.046 13.2 0.1 0.076 12.5 0.1 1.3 1 0 0 1 1 1 0 Putative methyltransferase Spermine_synth PF01564.17 gi|294495698|ref|YP_003542191.1| - 0.18 11.2 0.3 0.29 10.5 0.3 1.3 1 0 0 1 1 1 0 Spermine/spermidine synthase domain DUF655 PF04919.12 gi|294495699|ref|YP_003542192.1| - 5.4e-69 231.8 0.2 6.2e-69 231.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|294495699|ref|YP_003542192.1| - 0.00022 21.4 0.0 0.00045 20.4 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|294495699|ref|YP_003542192.1| - 0.00031 20.9 0.0 0.00055 20.1 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|294495699|ref|YP_003542192.1| - 0.038 14.6 1.1 1.6 9.4 0.1 2.4 2 1 0 2 2 2 0 Helix-hairpin-helix domain RNA_pol_Rpb4 PF03874.16 gi|294495700|ref|YP_003542193.1| - 3.7e-12 46.6 2.3 5.4e-12 46.1 2.3 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb4 Glycos_trans_3N PF02885.17 gi|294495700|ref|YP_003542193.1| - 0.0024 17.7 1.3 0.65 9.9 0.1 3.4 1 1 2 3 3 3 2 Glycosyl transferase family, helical bundle domain Ribosomal_L21e PF01157.18 gi|294495701|ref|YP_003542194.1| - 1.9e-36 124.0 0.4 2.1e-36 123.8 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.17 gi|294495702|ref|YP_003542195.1| - 1.9e-10 41.0 0.1 4.2e-10 39.9 0.1 1.6 1 0 0 1 1 1 1 THUMP domain TruB_N PF01509.18 gi|294495702|ref|YP_003542195.1| - 0.0018 18.6 0.1 0.043 14.2 0.1 2.5 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) Zn_Tnp_IS91 PF14319.6 gi|294495702|ref|YP_003542195.1| - 0.22 11.6 1.4 4.1 7.5 0.3 2.6 2 0 0 2 2 2 0 Transposase zinc-binding domain Methyltrn_RNA_2 PF04013.12 gi|294495703|ref|YP_003542196.1| - 3e-63 213.1 0.0 3.4e-63 212.9 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase SpoU_methylase PF00588.19 gi|294495703|ref|YP_003542196.1| - 0.13 12.4 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 SpoU rRNA Methylase family AIM24 PF01987.17 gi|294495704|ref|YP_003542197.1| - 9.3e-69 231.3 0.3 1.1e-68 231.1 0.3 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Metallophos_2 PF12850.7 gi|294495705|ref|YP_003542198.1| - 3.6e-20 72.8 0.0 4.2e-20 72.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|294495705|ref|YP_003542198.1| - 6.3e-18 66.0 0.0 1.6e-17 64.7 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|294495705|ref|YP_003542198.1| - 1.3e-08 34.5 0.3 2.2e-05 23.9 0.1 2.6 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Lactamase_B_2 PF12706.7 gi|294495706|ref|YP_003542199.1| - 1e-23 83.9 0.0 1.3e-23 83.6 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|294495706|ref|YP_003542199.1| - 1.7e-13 51.1 0.5 6.3e-13 49.2 0.5 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|294495706|ref|YP_003542199.1| - 0.0072 16.2 0.1 0.061 13.2 0.1 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain zf_CopZ PF18423.1 gi|294495707|ref|YP_003542200.1| - 3.2e-22 78.3 2.2 3.2e-22 78.3 2.2 1.8 2 0 0 2 2 2 1 Zinc binding domain Fer2_BFD PF04324.15 gi|294495707|ref|YP_003542200.1| - 3.2e-06 27.4 2.7 5.8e-06 26.6 2.7 1.5 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain DUF2283 PF10049.9 gi|294495708|ref|YP_003542201.1| - 7.2e-14 51.7 1.1 1.4e-13 50.8 1.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) N6_Mtase PF02384.16 gi|294495709|ref|YP_003542202.1| - 1.4e-106 356.3 0.0 1.9e-106 355.9 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|294495709|ref|YP_003542202.1| - 9.2e-26 91.1 0.2 9.2e-26 91.1 0.2 2.4 2 1 0 2 2 2 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|294495709|ref|YP_003542202.1| - 6.3e-07 29.3 0.0 2e-06 27.6 0.0 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Eco57I PF07669.11 gi|294495709|ref|YP_003542202.1| - 0.00053 20.4 0.0 0.0031 18.0 0.0 2.3 2 1 0 2 2 2 1 Eco57I restriction-modification methylase Pyrophosphatase PF00719.19 gi|294495709|ref|YP_003542202.1| - 0.001 18.9 0.2 0.057 13.2 0.0 2.2 2 0 0 2 2 2 1 Inorganic pyrophosphatase Cons_hypoth95 PF03602.15 gi|294495709|ref|YP_003542202.1| - 0.0058 16.3 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|294495709|ref|YP_003542202.1| - 0.0063 16.3 0.0 0.023 14.5 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|294495709|ref|YP_003542202.1| - 0.0078 15.8 0.0 0.074 12.6 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase small domain AviRa PF11599.8 gi|294495709|ref|YP_003542202.1| - 0.047 13.1 0.0 0.13 11.7 0.0 1.8 2 0 0 2 2 2 0 RRNA methyltransferase AviRa N6_Mtase PF02384.16 gi|294495710|ref|YP_003542203.1| - 3.5e-93 312.3 1.0 5.2e-93 311.7 1.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|294495710|ref|YP_003542203.1| - 2.5e-23 83.2 0.4 7e-23 81.8 0.0 2.0 2 0 0 2 2 2 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|294495710|ref|YP_003542203.1| - 1.2e-08 34.9 0.1 4.8e-08 32.9 0.0 2.0 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Eco57I PF07669.11 gi|294495710|ref|YP_003542203.1| - 3.5e-06 27.5 0.1 1.2e-05 25.8 0.1 1.9 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_31 PF13847.6 gi|294495710|ref|YP_003542203.1| - 7e-05 22.7 0.0 0.00021 21.1 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase domain AviRa PF11599.8 gi|294495710|ref|YP_003542203.1| - 0.0096 15.4 0.8 0.051 13.0 0.0 2.4 2 1 1 3 3 3 1 RRNA methyltransferase AviRa MTS PF05175.14 gi|294495710|ref|YP_003542203.1| - 0.019 14.5 0.0 0.064 12.8 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase small domain Methylase_S PF01420.19 gi|294495711|ref|YP_003542204.1| - 1.4e-41 142.6 8.9 8.5e-30 104.2 4.7 2.3 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain Nup54_57_C PF18570.1 gi|294495711|ref|YP_003542204.1| - 0.057 13.0 0.4 0.15 11.6 0.4 1.7 1 0 0 1 1 1 0 NUP57/Nup54 C-terminal domain SWI2_SNF2 PF18766.1 gi|294495712|ref|YP_003542205.1| - 7.2e-72 241.7 0.2 5.6e-71 238.8 0.0 2.2 2 0 0 2 2 2 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|294495712|ref|YP_003542205.1| - 1.6e-33 116.3 0.7 6.2e-33 114.4 0.0 2.4 3 0 0 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.15 gi|294495712|ref|YP_003542205.1| - 3.7e-20 72.6 0.0 1.1e-19 71.0 0.0 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|294495712|ref|YP_003542205.1| - 0.0018 18.0 0.1 0.0048 16.7 0.1 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|294495712|ref|YP_003542205.1| - 0.004 16.5 0.0 0.0077 15.5 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) SNF2_N PF00176.23 gi|294495712|ref|YP_003542205.1| - 0.0062 15.3 0.0 0.013 14.3 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF5631 PF18645.1 gi|294495712|ref|YP_003542205.1| - 0.082 13.3 0.0 0.33 11.4 0.0 2.1 1 1 1 2 2 2 0 Family of unknown function (DUF5631) AAA_22 PF13401.6 gi|294495712|ref|YP_003542205.1| - 0.12 12.7 0.1 0.71 10.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|294495715|ref|YP_003542208.1| - 8.4e-43 147.5 18.6 8.4e-43 147.5 18.6 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 gi|294495715|ref|YP_003542208.1| - 6.1e-18 65.7 6.2 1.5e-08 34.8 0.0 2.9 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|294495715|ref|YP_003542208.1| - 1.4e-14 55.1 3.4 1.4e-14 55.1 3.4 3.0 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|294495715|ref|YP_003542208.1| - 2.4e-12 46.8 0.9 3.2e-11 43.1 1.2 2.4 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.8 gi|294495715|ref|YP_003542208.1| - 8.9e-08 31.8 3.9 2.3e-06 27.2 0.5 2.8 3 0 0 3 3 3 2 Protein of unknown function (DUF2813) AAA_29 PF13555.6 gi|294495715|ref|YP_003542208.1| - 3.6e-05 23.4 0.1 7.6e-05 22.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|294495715|ref|YP_003542208.1| - 0.0056 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|294495715|ref|YP_003542208.1| - 0.0088 16.4 0.8 0.049 14.0 0.1 2.8 3 0 0 3 3 3 1 RNA helicase ABC_tran PF00005.27 gi|294495715|ref|YP_003542208.1| - 0.025 15.1 0.0 0.07 13.6 0.0 1.8 1 0 0 1 1 1 0 ABC transporter SNase PF00565.17 gi|294495716|ref|YP_003542209.1| - 2.3e-08 34.5 0.4 3.5e-08 33.9 0.4 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue UvrD-helicase PF00580.21 gi|294495717|ref|YP_003542210.1| - 2e-65 221.4 0.2 1.4e-63 215.3 0.0 3.0 3 0 0 3 3 3 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|294495717|ref|YP_003542210.1| - 2.4e-45 155.5 4.0 2.4e-45 155.5 4.0 2.8 3 0 0 3 3 3 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 gi|294495717|ref|YP_003542210.1| - 2.3e-40 139.1 0.1 6.1e-40 137.7 0.1 1.8 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.6 gi|294495717|ref|YP_003542210.1| - 9e-29 100.7 0.0 6.3e-28 97.9 0.0 2.3 3 0 0 3 3 3 1 AAA domain UvrD_C_2 PF13538.6 gi|294495717|ref|YP_003542210.1| - 2.5e-11 43.2 0.5 2.5e-05 24.0 0.2 2.5 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|294495717|ref|YP_003542210.1| - 6.6e-08 32.5 0.0 6e-05 22.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain DUF2800 PF10926.8 gi|294495717|ref|YP_003542210.1| - 5e-07 29.3 0.1 2.5e-06 27.0 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2800) AAA_12 PF13087.6 gi|294495717|ref|YP_003542210.1| - 7.3e-05 22.5 0.9 0.0028 17.3 0.0 3.1 2 1 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|294495717|ref|YP_003542210.1| - 0.00038 20.3 4.7 1.3 8.7 0.1 4.2 3 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|294495717|ref|YP_003542210.1| - 0.051 13.4 0.0 0.18 11.5 0.0 2.1 1 1 0 1 1 1 0 AAA domain UPF0184 PF03670.13 gi|294495717|ref|YP_003542210.1| - 0.07 13.5 3.6 8.4 6.9 0.1 4.1 4 0 0 4 4 4 0 Uncharacterised protein family (UPF0184) SBF PF01758.16 gi|294495718|ref|YP_003542211.1| - 3.1e-30 105.3 13.8 3.1e-30 105.3 13.8 1.6 2 1 0 2 2 2 1 Sodium Bile acid symporter family PsiE PF06146.12 gi|294495719|ref|YP_003542212.1| - 7.7e-10 39.0 9.1 7.7e-10 39.0 9.1 2.1 2 0 0 2 2 2 1 Phosphate-starvation-inducible E MerC PF03203.14 gi|294495719|ref|YP_003542212.1| - 0.12 12.8 4.3 0.33 11.4 3.4 1.9 1 1 1 2 2 2 0 MerC mercury resistance protein TssN PF17555.2 gi|294495719|ref|YP_003542212.1| - 0.86 8.9 16.0 1.1 8.5 16.0 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssN DUF3852 PF12963.7 gi|294495719|ref|YP_003542212.1| - 2.3 8.6 9.7 0.45 10.9 1.6 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3852) AhpC-TSA PF00578.21 gi|294495720|ref|YP_003542213.1| - 4.3e-27 94.5 0.0 6.6e-27 93.9 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.9 gi|294495720|ref|YP_003542213.1| - 1.5e-14 53.5 0.4 2.9e-14 52.6 0.4 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.10 gi|294495720|ref|YP_003542213.1| - 1.2e-09 38.0 0.0 2.5e-09 37.0 0.0 1.5 1 1 0 1 1 1 1 Redoxin TM_helix PF05552.12 gi|294495721|ref|YP_003542214.1| - 2.4e-19 69.0 35.1 2.9e-10 39.9 3.5 5.1 5 0 0 5 5 5 3 Conserved TM helix DUF1449 PF07290.11 gi|294495721|ref|YP_003542214.1| - 2.6 7.6 14.4 0.81 9.3 0.1 3.1 3 1 0 3 3 3 0 Protein of unknown function (DUF1449) MurJ PF03023.14 gi|294495723|ref|YP_003542216.1| - 0.00011 20.9 2.7 0.00014 20.6 2.7 1.2 1 0 0 1 1 1 1 Lipid II flippase MurJ PMP22_Claudin PF00822.20 gi|294495723|ref|YP_003542216.1| - 5.5 6.8 8.5 0.47 10.3 1.7 2.0 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin family NnrU PF07298.11 gi|294495724|ref|YP_003542217.1| - 2.9e-08 33.5 6.7 5.2e-08 32.7 6.7 1.4 1 1 0 1 1 1 1 NnrU protein PEMT PF04191.13 gi|294495724|ref|YP_003542217.1| - 0.00082 19.7 0.2 0.00082 19.7 0.2 2.1 3 0 0 3 3 3 1 Phospholipid methyltransferase HATPase_c PF02518.26 gi|294495726|ref|YP_003542219.1| - 3.9e-29 101.4 1.1 1.1e-28 99.9 0.4 2.2 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_1 PF02743.18 gi|294495726|ref|YP_003542219.1| - 2.1e-25 90.0 1.5 2.1e-25 90.0 1.5 1.8 2 0 0 2 2 2 1 Cache domain HisKA PF00512.25 gi|294495726|ref|YP_003542219.1| - 2.5e-16 59.5 1.6 4.5e-16 58.6 0.0 2.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain Cache_3-Cache_2 PF17201.4 gi|294495726|ref|YP_003542219.1| - 1.3e-08 34.5 0.3 5.7e-08 32.4 0.1 2.1 2 0 0 2 2 2 1 Cache 3/Cache 2 fusion domain HATPase_c_3 PF13589.6 gi|294495726|ref|YP_003542219.1| - 2.5e-05 24.1 0.1 6.3e-05 22.8 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase sCache_2 PF17200.4 gi|294495726|ref|YP_003542219.1| - 0.016 15.1 0.0 0.043 13.7 0.0 1.7 1 0 0 1 1 1 0 Single Cache domain 2 dCache_2 PF08269.11 gi|294495726|ref|YP_003542219.1| - 0.036 13.3 0.7 0.064 12.4 0.0 1.8 2 0 0 2 2 2 0 Cache domain Ly49 PF08391.10 gi|294495726|ref|YP_003542219.1| - 0.28 11.5 4.9 0.3 11.5 0.5 2.4 2 0 0 2 2 2 0 Ly49-like protein, N-terminal region DASH_Dad4 PF08650.10 gi|294495726|ref|YP_003542219.1| - 0.29 11.1 2.7 1.3 9.1 0.1 2.6 2 0 0 2 2 2 0 DASH complex subunit Dad4 Wzz PF02706.15 gi|294495726|ref|YP_003542219.1| - 2.8 8.3 8.4 12 6.3 1.4 2.5 2 0 0 2 2 2 0 Chain length determinant protein TIR_2 PF13676.6 gi|294495728|ref|YP_003542221.1| - 1.3e-13 51.5 0.0 1.9e-13 51.0 0.0 1.2 1 0 0 1 1 1 1 TIR domain CpXC PF14353.6 gi|294495728|ref|YP_003542221.1| - 0.0041 17.1 1.4 0.022 14.8 1.6 1.9 1 1 1 2 2 2 1 CpXC protein zf-ribbon_3 PF13248.6 gi|294495728|ref|YP_003542221.1| - 0.0064 15.9 1.3 0.17 11.4 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Nuc_deoxyrib_tr PF05014.15 gi|294495728|ref|YP_003542221.1| - 0.012 15.7 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase Mut7-C PF01927.16 gi|294495728|ref|YP_003542221.1| - 0.046 13.8 0.0 0.064 13.4 0.0 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain zinc_ribbon_4 PF13717.6 gi|294495728|ref|YP_003542221.1| - 0.081 12.9 0.2 0.56 10.2 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|294495728|ref|YP_003542221.1| - 0.087 12.9 0.7 0.5 10.4 1.1 1.9 1 1 1 2 2 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|294495728|ref|YP_003542221.1| - 1.4 8.5 4.0 6.9 6.3 4.0 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding CC2-LZ PF16516.5 gi|294495729|ref|YP_003542222.1| - 0.0031 17.8 1.9 0.0052 17.1 1.9 1.3 1 0 0 1 1 1 1 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator GAPES1 PF17155.4 gi|294495729|ref|YP_003542222.1| - 0.039 13.3 0.0 0.043 13.1 0.0 1.0 1 0 0 1 1 1 0 Gammaproteobacterial periplasmic sensor domain DUF4191 PF13829.6 gi|294495729|ref|YP_003542222.1| - 0.11 11.8 1.0 0.11 11.8 0.2 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) LMBR1 PF04791.16 gi|294495729|ref|YP_003542222.1| - 0.12 11.3 0.2 0.14 11.0 0.2 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein PKcGMP_CC PF16808.5 gi|294495729|ref|YP_003542222.1| - 0.89 9.5 5.6 9.5 6.2 0.9 3.0 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase HTH_45 PF14947.6 gi|294495730|ref|YP_003542223.1| - 0.0012 18.7 0.1 0.0012 18.7 0.1 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix Fe_dep_repress PF01325.19 gi|294495730|ref|YP_003542223.1| - 0.029 14.6 0.2 0.057 13.6 0.1 1.5 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF5385 PF17359.2 gi|294495731|ref|YP_003542224.1| - 0.62 9.6 2.2 0.64 9.5 2.2 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5385) Cupin_2 PF07883.11 gi|294495732|ref|YP_003542225.1| - 1.1e-09 37.8 0.0 1.3e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|294495732|ref|YP_003542225.1| - 5.4e-07 29.6 0.0 6.9e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain ARD PF03079.14 gi|294495732|ref|YP_003542225.1| - 0.0028 17.8 0.0 0.0032 17.7 0.0 1.2 1 0 0 1 1 1 1 ARD/ARD' family Cupin_7 PF12973.7 gi|294495732|ref|YP_003542225.1| - 0.0074 16.2 0.0 0.0088 15.9 0.0 1.1 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_3 PF05899.12 gi|294495732|ref|YP_003542225.1| - 0.018 14.7 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_1 PF00190.22 gi|294495732|ref|YP_003542225.1| - 0.03 13.9 0.0 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 Cupin Ectoine_synth PF06339.12 gi|294495732|ref|YP_003542225.1| - 0.073 13.3 0.0 0.092 12.9 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase Rhodanese PF00581.20 gi|294495733|ref|YP_003542226.1| - 1.4e-23 83.5 0.1 8.8e-15 55.1 0.1 2.7 2 0 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.27 gi|294495733|ref|YP_003542226.1| - 1.7e-08 34.7 0.0 1.8e-06 28.1 0.1 3.4 3 1 0 3 3 3 1 Metallo-beta-lactamase superfamily PDDEXK_4 PF14281.6 gi|294495734|ref|YP_003542227.1| - 0.067 13.3 0.1 0.11 12.6 0.1 1.3 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily ISP1_C PF18161.1 gi|294495734|ref|YP_003542227.1| - 0.099 12.7 0.0 3.6 7.6 0.0 2.4 1 1 1 2 2 2 0 ISP1 C-terminal tRNA-synt_1e PF01406.19 gi|294495735|ref|YP_003542228.1| - 1.3e-104 349.7 0.0 1.8e-104 349.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|294495735|ref|YP_003542228.1| - 6.6e-14 51.5 0.1 8.6e-07 28.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 gi|294495735|ref|YP_003542228.1| - 4e-12 46.4 0.0 9.5e-12 45.2 0.0 1.6 1 0 0 1 1 1 1 DALR domain tRNA-synt_1f PF01921.18 gi|294495735|ref|YP_003542228.1| - 1.8e-10 40.3 0.1 7.7e-06 25.1 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|294495735|ref|YP_003542228.1| - 7.3e-09 34.4 0.0 2.5e-07 29.4 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.21 gi|294495735|ref|YP_003542228.1| - 0.02 13.8 0.0 0.071 12.0 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1d PF00750.19 gi|294495735|ref|YP_003542228.1| - 0.11 11.4 1.7 0.49 9.3 0.0 2.7 3 2 2 5 5 5 0 tRNA synthetases class I (R) RTC PF01137.21 gi|294495736|ref|YP_003542229.1| - 4.8e-80 267.9 0.0 5.5e-80 267.7 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|294495736|ref|YP_003542229.1| - 1e-16 61.3 0.0 1.8e-16 60.5 0.0 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain AAA PF00004.29 gi|294495737|ref|YP_003542230.1| - 1.8e-95 316.4 0.0 4.9e-47 159.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|294495737|ref|YP_003542230.1| - 2.6e-32 110.4 2.6 3.8e-16 58.6 0.1 2.8 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|294495737|ref|YP_003542230.1| - 3.8e-27 94.3 0.0 1.8e-26 92.1 0.2 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.6 gi|294495737|ref|YP_003542230.1| - 5e-16 59.5 0.2 1.1e-07 32.4 0.0 3.1 3 1 0 3 3 2 2 AAA ATPase domain AAA_2 PF07724.14 gi|294495737|ref|YP_003542230.1| - 5.6e-15 55.9 0.0 1.9e-07 31.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|294495737|ref|YP_003542230.1| - 8.4e-15 54.9 0.0 1.9e-06 27.7 0.0 3.0 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|294495737|ref|YP_003542230.1| - 8.7e-15 54.3 0.0 3.2e-14 52.5 0.0 2.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.14 gi|294495737|ref|YP_003542230.1| - 8.8e-13 48.4 1.0 0.00012 22.1 0.0 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|294495737|ref|YP_003542230.1| - 5e-11 43.0 0.2 0.0037 17.5 0.0 3.9 2 2 1 3 3 3 2 AAA domain TIP49 PF06068.13 gi|294495737|ref|YP_003542230.1| - 6.6e-11 42.0 0.0 0.0005 19.4 0.0 2.8 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|294495737|ref|YP_003542230.1| - 1.9e-09 37.6 0.0 0.00022 21.3 0.0 2.7 3 0 0 3 3 2 2 AAA domain IstB_IS21 PF01695.17 gi|294495737|ref|YP_003542230.1| - 3.9e-09 36.5 0.0 0.0016 18.2 0.0 3.0 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_33 PF13671.6 gi|294495737|ref|YP_003542230.1| - 4.9e-09 36.5 0.0 0.00024 21.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|294495737|ref|YP_003542230.1| - 1.8e-08 34.3 0.0 0.0039 16.9 0.0 3.4 2 1 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|294495737|ref|YP_003542230.1| - 4.2e-08 32.8 0.5 0.0058 16.0 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|294495737|ref|YP_003542230.1| - 7.4e-08 32.5 0.2 0.055 13.4 0.0 3.6 3 1 1 4 4 3 2 NACHT domain AAA_18 PF13238.6 gi|294495737|ref|YP_003542230.1| - 7.5e-08 33.0 0.0 0.014 15.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|294495737|ref|YP_003542230.1| - 1e-06 28.7 0.0 0.006 16.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|294495737|ref|YP_003542230.1| - 1.6e-06 28.0 0.1 0.066 13.2 0.0 3.2 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain AAA_28 PF13521.6 gi|294495737|ref|YP_003542230.1| - 1.9e-06 28.2 0.0 0.11 12.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|294495737|ref|YP_003542230.1| - 4.2e-06 26.4 0.0 0.11 12.0 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|294495737|ref|YP_003542230.1| - 7.7e-06 25.2 0.1 0.013 14.6 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Zeta_toxin PF06414.12 gi|294495737|ref|YP_003542230.1| - 8.2e-06 25.2 0.4 0.098 11.9 0.0 2.8 3 0 0 3 3 2 2 Zeta toxin TsaE PF02367.17 gi|294495737|ref|YP_003542230.1| - 8.2e-06 25.8 0.0 0.16 12.0 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|294495737|ref|YP_003542230.1| - 1.1e-05 25.9 0.0 0.11 13.1 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_11 PF13086.6 gi|294495737|ref|YP_003542230.1| - 2.1e-05 24.5 0.0 0.12 12.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|294495737|ref|YP_003542230.1| - 2.3e-05 24.7 0.0 0.11 12.9 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_3 PF07726.11 gi|294495737|ref|YP_003542230.1| - 3.2e-05 23.8 0.0 0.24 11.3 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|294495737|ref|YP_003542230.1| - 3.9e-05 23.3 4.1 0.1 12.2 0.2 3.7 2 2 0 3 3 3 1 AAA domain ATPase PF06745.13 gi|294495737|ref|YP_003542230.1| - 5.9e-05 22.5 0.2 0.72 9.2 0.1 3.3 2 1 0 2 2 2 2 KaiC NB-ARC PF00931.22 gi|294495737|ref|YP_003542230.1| - 6.6e-05 22.2 0.0 0.55 9.4 0.0 3.2 3 0 0 3 3 3 2 NB-ARC domain AAA_30 PF13604.6 gi|294495737|ref|YP_003542230.1| - 0.00013 21.7 0.1 0.37 10.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.6 gi|294495737|ref|YP_003542230.1| - 0.00016 22.1 0.0 0.1 13.1 0.0 3.2 3 0 0 3 3 2 1 AAA domain PhoH PF02562.16 gi|294495737|ref|YP_003542230.1| - 0.0002 20.9 0.5 0.68 9.3 0.0 2.8 3 0 0 3 3 2 2 PhoH-like protein DUF2075 PF09848.9 gi|294495737|ref|YP_003542230.1| - 0.00036 19.9 0.0 0.34 10.1 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Sigma54_activ_2 PF14532.6 gi|294495737|ref|YP_003542230.1| - 0.00047 20.3 0.0 1.2 9.3 0.0 2.8 3 0 0 3 3 2 1 Sigma-54 interaction domain AAA_19 PF13245.6 gi|294495737|ref|YP_003542230.1| - 0.00064 20.1 0.0 1.2 9.5 0.0 2.8 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|294495737|ref|YP_003542230.1| - 0.0012 18.9 0.0 2 8.3 0.0 3.0 3 1 0 3 3 2 1 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|294495737|ref|YP_003542230.1| - 0.0018 17.5 0.0 0.96 8.5 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF815) TniB PF05621.11 gi|294495737|ref|YP_003542230.1| - 0.0041 16.6 0.0 3.6 6.9 0.0 2.9 2 0 0 2 2 2 0 Bacterial TniB protein Cytidylate_kin PF02224.18 gi|294495737|ref|YP_003542230.1| - 0.0058 16.4 0.1 3.5 7.3 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase AFG1_ATPase PF03969.16 gi|294495737|ref|YP_003542230.1| - 0.0067 15.4 0.0 2.3 7.0 0.0 2.4 2 0 0 2 2 2 1 AFG1-like ATPase Bac_DnaA PF00308.18 gi|294495737|ref|YP_003542230.1| - 0.009 15.9 0.0 2.5 7.9 0.0 2.7 2 1 0 2 2 2 1 Bacterial dnaA protein ResIII PF04851.15 gi|294495737|ref|YP_003542230.1| - 0.014 15.4 0.0 7.1 6.6 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit NTPase_1 PF03266.15 gi|294495737|ref|YP_003542230.1| - 0.027 14.4 0.1 13 5.6 0.0 3.0 2 1 1 3 3 2 0 NTPase Guanylate_kin PF00625.21 gi|294495737|ref|YP_003542230.1| - 0.038 13.7 0.1 19 4.9 0.0 3.7 2 2 2 4 4 4 0 Guanylate kinase CPT PF07931.12 gi|294495737|ref|YP_003542230.1| - 0.046 13.6 0.0 4.5 7.1 0.0 2.6 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA_29 PF13555.6 gi|294495737|ref|YP_003542230.1| - 0.053 13.3 0.0 13 5.6 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain PduV-EutP PF10662.9 gi|294495737|ref|YP_003542230.1| - 0.064 13.0 0.0 13 5.5 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation T2SSE PF00437.20 gi|294495737|ref|YP_003542230.1| - 0.074 12.1 0.0 16 4.4 0.0 2.7 2 0 0 2 2 2 0 Type II/IV secretion system protein SKI PF01202.22 gi|294495737|ref|YP_003542230.1| - 0.081 13.0 0.0 9.9 6.3 0.0 2.4 2 0 0 2 2 2 0 Shikimate kinase cobW PF02492.19 gi|294495737|ref|YP_003542230.1| - 0.088 12.4 0.0 11 5.6 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain GvpD PF07088.11 gi|294495737|ref|YP_003542230.1| - 0.14 10.7 0.0 11 4.5 0.0 2.2 2 0 0 2 2 2 0 GvpD gas vesicle protein KAP_NTPase PF07693.14 gi|294495737|ref|YP_003542230.1| - 0.15 11.3 0.0 16 4.6 0.0 2.5 2 1 0 2 2 2 0 KAP family P-loop domain SNARE_assoc PF09335.11 gi|294495738|ref|YP_003542231.1| - 1.9e-06 28.4 1.6 1.9e-06 28.4 1.6 2.2 1 1 1 2 2 2 1 SNARE associated Golgi protein DUF5345 PF17280.2 gi|294495738|ref|YP_003542231.1| - 0.012 15.6 0.1 0.012 15.6 0.1 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5345) Pex24p PF06398.11 gi|294495738|ref|YP_003542231.1| - 0.97 8.4 5.8 0.78 8.7 4.4 1.8 1 1 1 2 2 2 0 Integral peroxisomal membrane peroxin PPDK_N PF01326.19 gi|294495739|ref|YP_003542232.1| - 3.1e-71 240.3 0.0 4.6e-71 239.8 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|294495739|ref|YP_003542232.1| - 6.8e-21 73.8 0.9 1.9e-20 72.4 0.9 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Putative_PNPOx PF01243.20 gi|294495740|ref|YP_003542233.1| - 1e-08 35.3 0.0 1.4e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF1059 PF06348.11 gi|294495741|ref|YP_003542234.1| - 5.8e-20 71.3 1.5 7.4e-20 70.9 1.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) PhosphMutase PF10143.9 gi|294495741|ref|YP_003542234.1| - 0.017 15.0 0.0 0.02 14.8 0.0 1.0 1 0 0 1 1 1 0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase DUF832 PF05734.11 gi|294495741|ref|YP_003542234.1| - 0.14 11.6 0.3 0.16 11.4 0.3 1.0 1 0 0 1 1 1 0 Herpesvirus protein of unknown function (DUF832) PAS_3 PF08447.12 gi|294495741|ref|YP_003542234.1| - 0.15 12.4 0.0 0.2 12.0 0.0 1.2 1 0 0 1 1 1 0 PAS fold CMD PF02627.20 gi|294495742|ref|YP_003542235.1| - 1.7e-07 31.2 0.0 1.9e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Cytochrom_C PF00034.21 gi|294495743|ref|YP_003542236.1| - 2e-08 35.3 0.0 3.5e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 gi|294495743|ref|YP_003542236.1| - 8.3e-07 29.2 0.2 1.8e-06 28.2 0.2 1.5 1 1 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Hexapep PF00132.24 gi|294495744|ref|YP_003542237.1| - 3e-23 80.6 12.0 3e-11 42.6 1.9 4.2 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|294495744|ref|YP_003542237.1| - 7.5e-10 38.4 10.1 6e-08 32.3 3.2 3.6 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase HAS-barrel PF09378.10 gi|294495744|ref|YP_003542237.1| - 0.018 15.2 0.4 0.045 13.9 0.1 1.8 2 0 0 2 2 2 0 HAS barrel domain DUF4954 PF16314.5 gi|294495744|ref|YP_003542237.1| - 0.031 12.4 3.8 0.028 12.6 0.4 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|294495744|ref|YP_003542237.1| - 0.13 11.2 0.2 0.15 11.0 0.2 1.3 1 1 0 1 1 1 0 L-fucokinase DAPDH_C PF16654.5 gi|294495745|ref|YP_003542238.1| - 0.038 13.9 0.1 0.043 13.7 0.1 1.1 1 0 0 1 1 1 0 Diaminopimelic acid dehydrogenase C-terminal domain C_GCAxxG_C_C PF09719.10 gi|294495746|ref|YP_003542239.1| - 1.8e-21 76.6 0.0 2.2e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 Putative redox-active protein (C_GCAxxG_C_C) Peptidase_C92 PF05708.12 gi|294495746|ref|YP_003542239.1| - 0.062 13.4 0.0 0.088 12.9 0.0 1.3 1 0 0 1 1 1 0 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Flavodoxin_3 PF12641.7 gi|294495747|ref|YP_003542240.1| - 2e-22 79.6 0.0 2.4e-22 79.4 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_5 PF12724.7 gi|294495747|ref|YP_003542240.1| - 5.2e-07 30.0 0.0 9.8e-07 29.1 0.0 1.5 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|294495747|ref|YP_003542240.1| - 4.2e-05 23.8 0.0 4.7e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Usp PF00582.26 gi|294495748|ref|YP_003542241.1| - 2.2e-35 122.2 1.2 2.5e-35 122.1 1.2 1.0 1 0 0 1 1 1 1 Universal stress protein family Toprim_4 PF13662.6 gi|294495748|ref|YP_003542241.1| - 0.26 11.8 1.6 48 4.5 0.0 2.9 3 0 0 3 3 3 0 Toprim domain CysA_C_terminal PF17850.1 gi|294495749|ref|YP_003542242.1| - 0.12 13.0 0.0 0.17 12.4 0.0 1.3 1 0 0 1 1 1 0 CysA C-terminal regulatory domain DNA_pol_B_thumb PF14791.6 gi|294495750|ref|YP_003542243.1| - 3.1e-21 75.3 0.1 1.2e-20 73.4 0.0 2.1 2 0 0 2 2 2 1 DNA polymerase beta thumb HHH_8 PF14716.6 gi|294495750|ref|YP_003542243.1| - 4.6e-19 68.6 5.5 9e-17 61.2 0.2 3.5 3 0 0 3 3 3 2 Helix-hairpin-helix domain PHP PF02811.19 gi|294495750|ref|YP_003542243.1| - 2.6e-10 40.9 0.0 1.2e-09 38.7 0.0 2.1 1 1 0 1 1 1 1 PHP domain HHH_5 PF14520.6 gi|294495750|ref|YP_003542243.1| - 3.5e-09 37.1 6.4 6.7e-08 33.0 0.6 3.3 3 0 0 3 3 3 1 Helix-hairpin-helix domain IMS_HHH PF11798.8 gi|294495750|ref|YP_003542243.1| - 2.4e-07 30.7 0.4 0.076 13.4 0.0 3.9 3 0 0 3 3 3 2 IMS family HHH motif HHH_2 PF12826.7 gi|294495750|ref|YP_003542243.1| - 1.5e-05 24.9 0.0 0.051 13.7 0.0 3.0 3 0 0 3 3 2 2 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|294495750|ref|YP_003542243.1| - 0.00017 21.8 2.8 0.077 13.3 0.0 4.3 4 1 0 4 4 3 1 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.6 gi|294495750|ref|YP_003542243.1| - 0.00021 21.4 0.1 0.00093 19.4 0.0 2.1 2 0 0 2 2 2 1 DNA polymerase beta palm DNA_pol_lambd_f PF10391.9 gi|294495750|ref|YP_003542243.1| - 0.00026 20.7 0.0 0.063 13.1 0.0 3.1 3 0 0 3 3 3 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|294495750|ref|YP_003542243.1| - 0.00061 19.5 0.3 0.33 10.9 0.0 3.2 3 0 0 3 3 3 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|294495750|ref|YP_003542243.1| - 0.011 16.3 0.9 0.088 13.4 0.5 2.7 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Cdd1 PF11731.8 gi|294495750|ref|YP_003542243.1| - 0.016 15.4 0.1 6.7 7.0 0.0 2.6 1 1 1 2 2 2 0 Pathogenicity locus HRDC PF00570.23 gi|294495750|ref|YP_003542243.1| - 0.065 13.2 0.7 9.2 6.3 0.1 3.0 3 0 0 3 3 3 0 HRDC domain Ribosomal_S13 PF00416.22 gi|294495750|ref|YP_003542243.1| - 0.12 12.8 1.3 3.5 8.0 0.2 3.0 2 1 1 3 3 3 0 Ribosomal protein S13/S18 DNA_ligase_A_M PF01068.21 gi|294495751|ref|YP_003542244.1| - 8.8e-56 188.8 1.2 1.3e-55 188.2 1.2 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|294495751|ref|YP_003542244.1| - 2.8e-33 115.7 0.1 1.9e-32 113.0 0.1 2.1 2 1 0 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|294495751|ref|YP_003542244.1| - 5.5e-24 84.6 0.0 1.3e-23 83.5 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|294495751|ref|YP_003542244.1| - 1.1e-09 38.8 1.0 1.8e-09 38.1 1.0 1.4 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|294495751|ref|YP_003542244.1| - 0.00013 22.0 2.1 0.0068 16.4 2.1 2.7 1 1 0 1 1 1 1 DNA ligase OB-like domain mRNA_cap_enzyme PF01331.19 gi|294495751|ref|YP_003542244.1| - 0.0024 17.7 0.8 0.19 11.5 0.8 2.9 1 1 0 1 1 1 1 mRNA capping enzyme, catalytic domain PRC PF05239.16 gi|294495752|ref|YP_003542245.1| - 8.4e-09 35.4 0.0 1e-08 35.1 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain DLH PF01738.18 gi|294495753|ref|YP_003542246.1| - 1.2e-07 31.5 0.0 1.5e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|294495753|ref|YP_003542246.1| - 6.9e-07 28.8 0.1 0.026 13.8 0.0 3.1 3 0 0 3 3 3 3 Serine aminopeptidase, S33 BAAT_C PF08840.11 gi|294495753|ref|YP_003542246.1| - 6.7e-05 22.9 0.1 0.0005 20.1 0.0 1.9 1 1 1 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S9 PF00326.21 gi|294495753|ref|YP_003542246.1| - 7.2e-05 22.4 0.3 0.25 10.8 0.1 2.6 2 1 1 3 3 3 2 Prolyl oligopeptidase family Abhydrolase_2 PF02230.16 gi|294495753|ref|YP_003542246.1| - 9.8e-05 22.3 0.0 0.12 12.1 0.0 2.1 2 0 0 2 2 2 2 Phospholipase/Carboxylesterase PAF-AH_p_II PF03403.13 gi|294495753|ref|YP_003542246.1| - 0.046 12.2 0.0 0.47 8.9 0.0 1.9 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II Abhydrolase_1 PF00561.20 gi|294495753|ref|YP_003542246.1| - 0.071 12.7 0.1 1.9 8.0 0.1 2.6 1 1 1 2 2 2 0 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 gi|294495753|ref|YP_003542246.1| - 0.098 12.2 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) PhoPQ_related PF10142.9 gi|294495753|ref|YP_003542246.1| - 0.16 10.6 0.0 0.24 10.0 0.0 1.2 1 0 0 1 1 1 0 PhoPQ-activated pathogenicity-related protein Abhydrolase_6 PF12697.7 gi|294495753|ref|YP_003542246.1| - 0.17 12.5 0.0 4.6 7.8 0.0 2.0 1 1 1 2 2 2 0 Alpha/beta hydrolase family Pribosyltran PF00156.27 gi|294495754|ref|YP_003542247.1| - 2.2e-27 95.5 0.1 2.7e-27 95.2 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|294495754|ref|YP_003542247.1| - 6e-06 25.8 0.0 1.4e-05 24.6 0.0 1.6 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|294495754|ref|YP_003542247.1| - 1.8e-05 24.4 0.0 2.8e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase PALP PF00291.25 gi|294495754|ref|YP_003542247.1| - 0.073 12.5 0.0 0.25 10.7 0.0 1.7 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme AstE_AspA PF04952.14 gi|294495755|ref|YP_003542248.1| - 9.5e-51 172.6 0.0 1.1e-50 172.4 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M99 PF17033.5 gi|294495755|ref|YP_003542248.1| - 0.006 16.1 0.0 0.0087 15.5 0.0 1.2 1 0 0 1 1 1 1 Carboxypeptidase controlling helical cell shape catalytic DUF2817 PF10994.8 gi|294495755|ref|YP_003542248.1| - 0.019 14.4 0.0 2.7 7.3 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2817) RimK PF08443.11 gi|294495756|ref|YP_003542249.1| - 1.2e-65 220.7 0.1 1.7e-65 220.2 0.1 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Rimk_N PF18030.1 gi|294495756|ref|YP_003542249.1| - 2.1e-45 153.0 0.0 3.7e-45 152.2 0.0 1.4 1 0 0 1 1 1 1 RimK PreATP-grasp domain GSH-S_ATP PF02955.16 gi|294495756|ref|YP_003542249.1| - 4.3e-17 62.1 0.6 6.7e-17 61.4 0.6 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|294495756|ref|YP_003542249.1| - 1.7e-09 37.9 0.1 3e-09 37.1 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|294495756|ref|YP_003542249.1| - 1e-07 31.5 0.4 0.013 14.7 0.0 3.2 1 1 1 2 2 2 2 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|294495756|ref|YP_003542249.1| - 1e-05 24.9 0.0 0.0028 17.0 0.1 3.0 1 1 0 2 2 2 1 YheC/D like ATP-grasp Dala_Dala_lig_C PF07478.13 gi|294495756|ref|YP_003542249.1| - 0.00012 21.7 0.6 0.00065 19.3 0.6 1.9 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_2 PF08442.10 gi|294495756|ref|YP_003542249.1| - 0.014 14.9 0.2 0.031 13.8 0.2 1.5 1 0 0 1 1 1 0 ATP-grasp domain GARS_A PF01071.19 gi|294495756|ref|YP_003542249.1| - 0.034 13.9 0.1 0.065 13.0 0.1 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TTL PF03133.15 gi|294495756|ref|YP_003542249.1| - 0.05 12.7 0.0 2.7 7.1 0.0 2.3 2 0 0 2 2 2 0 Tubulin-tyrosine ligase family Zn_protease PF05618.11 gi|294495757|ref|YP_003542250.1| - 5.4e-33 113.8 0.0 6.7e-33 113.5 0.0 1.0 1 0 0 1 1 1 1 Putative ATP-dependant zinc protease DUF3533 PF12051.8 gi|294495758|ref|YP_003542251.1| - 0.27 10.1 3.4 0.28 10.1 3.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3533) TRAM PF01938.20 gi|294495759|ref|YP_003542252.1| - 8.9e-18 64.1 2.0 9.5e-18 64.0 2.0 1.0 1 0 0 1 1 1 1 TRAM domain DEAD PF00270.29 gi|294495760|ref|YP_003542253.1| - 1.3e-53 181.4 0.3 2.6e-53 180.4 0.1 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|294495760|ref|YP_003542253.1| - 1.6e-32 112.2 0.2 1.7e-29 102.4 0.1 2.7 2 0 0 2 2 2 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|294495760|ref|YP_003542253.1| - 9.3e-08 32.3 0.0 3e-07 30.6 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit CMS1 PF14617.6 gi|294495760|ref|YP_003542253.1| - 0.00015 21.2 0.1 0.00042 19.7 0.0 1.8 2 0 0 2 2 2 1 U3-containing 90S pre-ribosomal complex subunit Helicase_RecD PF05127.14 gi|294495760|ref|YP_003542253.1| - 0.00024 21.0 0.1 0.00075 19.4 0.0 1.9 2 1 0 2 2 2 1 Helicase AAA_30 PF13604.6 gi|294495760|ref|YP_003542253.1| - 0.00032 20.5 0.0 0.00072 19.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|294495760|ref|YP_003542253.1| - 0.0031 17.0 1.0 0.03 13.8 1.0 2.4 1 1 0 1 1 1 1 PhoH-like protein AAA_19 PF13245.6 gi|294495760|ref|YP_003542253.1| - 0.0076 16.6 1.1 0.026 14.9 1.0 2.1 1 1 0 1 1 1 1 AAA domain SNF2_N PF00176.23 gi|294495760|ref|YP_003542253.1| - 0.0092 14.7 0.0 0.012 14.3 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain Cast PF10174.9 gi|294495760|ref|YP_003542253.1| - 0.1 10.8 1.9 0.22 9.7 0.9 1.9 2 0 0 2 2 2 0 RIM-binding protein of the cytomatrix active zone AAA_22 PF13401.6 gi|294495760|ref|YP_003542253.1| - 0.22 11.8 1.8 1.3 9.3 0.9 2.7 2 1 0 2 2 2 0 AAA domain Lactamase_B PF00753.27 gi|294495761|ref|YP_003542254.1| - 6.3e-08 32.8 0.0 3.3e-07 30.5 0.0 2.0 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|294495761|ref|YP_003542254.1| - 0.0001 22.2 0.0 0.00022 21.1 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|294495761|ref|YP_003542254.1| - 0.00026 20.6 0.0 0.051 13.1 0.0 2.2 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Beta_lactamase3 PF17030.5 gi|294495761|ref|YP_003542254.1| - 0.038 13.2 0.1 0.08 12.2 0.1 1.4 1 0 0 1 1 1 0 Putative beta-lactamase-like family TrkA_C PF02080.21 gi|294495762|ref|YP_003542255.1| - 3.4e-12 46.0 0.1 8.5e-12 44.7 0.1 1.7 1 0 0 1 1 1 1 TrkA-C domain Amidohydro_2 PF04909.14 gi|294495764|ref|YP_003542257.1| - 4.9e-11 43.0 0.0 6.2e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase zf_C2H2_ZHX PF18387.1 gi|294495765|ref|YP_003542258.1| - 0.0029 17.2 0.3 0.0029 17.2 0.3 1.5 2 0 0 2 2 2 1 Zinc-fingers and homeoboxes C2H2 finger domain DZR PF12773.7 gi|294495765|ref|YP_003542258.1| - 0.0087 16.1 1.0 0.01 15.9 1.0 1.1 1 0 0 1 1 1 1 Double zinc ribbon ASFV_p27 PF06556.11 gi|294495765|ref|YP_003542258.1| - 0.043 13.9 0.8 0.043 13.9 0.8 1.2 1 0 0 1 1 1 0 IAP-like protein p27 C-terminus Ldh_1_N PF00056.23 gi|294495766|ref|YP_003542259.1| - 4.2e-41 140.3 1.7 6e-41 139.8 1.7 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|294495766|ref|YP_003542259.1| - 5.8e-28 97.9 0.0 1.1e-27 97.0 0.0 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|294495766|ref|YP_003542259.1| - 5.7e-05 22.8 3.6 0.00022 20.9 3.6 1.8 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glyco_hydro_4 PF02056.16 gi|294495766|ref|YP_003542259.1| - 0.00032 20.3 3.0 0.0018 17.9 0.2 2.4 1 1 1 2 2 2 1 Family 4 glycosyl hydrolase ThiF PF00899.21 gi|294495766|ref|YP_003542259.1| - 0.011 15.2 0.2 0.018 14.4 0.2 1.3 1 0 0 1 1 1 0 ThiF family F420_oxidored PF03807.17 gi|294495766|ref|YP_003542259.1| - 0.085 13.4 5.3 1.4 9.5 0.7 3.3 2 1 1 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|294495766|ref|YP_003542259.1| - 0.1 12.6 0.8 0.26 11.3 0.8 1.8 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase GntP_permease PF02447.16 gi|294495767|ref|YP_003542260.1| - 3e-26 92.1 28.0 1.3e-16 60.3 8.7 2.0 1 1 0 2 2 2 2 GntP family permease Macro PF01661.21 gi|294495768|ref|YP_003542261.1| - 2.7e-46 156.5 0.2 3.4e-46 156.1 0.2 1.1 1 0 0 1 1 1 1 Macro domain SUR7 PF06687.12 gi|294495769|ref|YP_003542262.1| - 0.0024 17.5 1.6 0.0029 17.3 1.6 1.1 1 0 0 1 1 1 1 SUR7/PalI family SLATT_5 PF18160.1 gi|294495769|ref|YP_003542262.1| - 0.058 12.7 4.1 0.071 12.4 4.1 1.1 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain family 5 Phage_Treg PF04761.12 gi|294495769|ref|YP_003542262.1| - 0.069 13.3 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Lactococcus bacteriophage putative transcription regulator DUF2207 PF09972.9 gi|294495769|ref|YP_003542262.1| - 0.086 11.6 1.6 0.096 11.4 1.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) TRIQK PF15168.6 gi|294495769|ref|YP_003542262.1| - 0.11 12.4 1.3 0.17 11.8 0.9 1.5 1 1 0 1 1 1 0 Triple QxxK/R motif-containing protein family NYN PF01936.18 gi|294495770|ref|YP_003542263.1| - 1.3e-20 74.4 0.1 2.1e-20 73.7 0.1 1.3 1 0 0 1 1 1 1 NYN domain HEPN_Cthe2314 PF18730.1 gi|294495772|ref|YP_003542265.1| - 2.6e-06 27.6 3.2 3.7e-06 27.1 3.2 1.2 1 0 0 1 1 1 1 Cthe_2314-like HEPN DUF948 PF06103.11 gi|294495774|ref|YP_003542267.1| - 0.0015 18.7 0.5 0.018 15.3 0.0 2.3 2 1 0 2 2 2 1 Bacterial protein of unknown function (DUF948) Uteroglobin PF01099.17 gi|294495774|ref|YP_003542267.1| - 0.03 14.7 1.3 0.055 13.8 0.4 1.8 2 0 0 2 2 2 0 Uteroglobin family Laminin_II PF06009.12 gi|294495774|ref|YP_003542267.1| - 0.032 14.3 0.5 0.072 13.1 0.1 1.8 2 0 0 2 2 2 0 Laminin Domain II MFS_Mycoplasma PF07672.13 gi|294495774|ref|YP_003542267.1| - 0.054 12.8 0.3 0.067 12.5 0.3 1.1 1 0 0 1 1 1 0 Mycoplasma MFS transporter TRP PF06011.12 gi|294495774|ref|YP_003542267.1| - 0.068 11.9 0.0 0.078 11.7 0.0 1.1 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel DUF2417 PF10329.9 gi|294495774|ref|YP_003542267.1| - 0.082 12.3 0.0 0.098 12.1 0.0 1.2 1 0 0 1 1 1 0 Region of unknown function (DUF2417) Metallophos_2 PF12850.7 gi|294495776|ref|YP_003542269.1| - 1.8e-25 90.1 0.3 2.1e-25 89.9 0.3 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|294495776|ref|YP_003542269.1| - 4.4e-08 33.9 2.5 2.6e-05 24.8 0.3 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|294495776|ref|YP_003542269.1| - 0.00075 18.9 0.1 0.74 9.1 0.1 2.1 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily HCBP_related PF06594.11 gi|294495776|ref|YP_003542269.1| - 0.017 15.0 0.0 0.031 14.2 0.0 1.4 1 0 0 1 1 1 0 Haemolysin-type calcium binding protein related domain CcmD PF04995.14 gi|294495777|ref|YP_003542270.1| - 1.1 9.4 4.4 2.2 8.4 4.4 1.6 1 1 0 1 1 1 0 Heme exporter protein D (CcmD) SSF PF00474.17 gi|294495778|ref|YP_003542271.1| - 7e-62 209.6 39.4 1.1e-61 208.9 39.4 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family DUF1638 PF07796.11 gi|294495779|ref|YP_003542272.1| - 1.3e-38 132.6 0.0 1.6e-38 132.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) Retrotran_gag_2 PF14223.6 gi|294495779|ref|YP_003542272.1| - 0.13 11.9 0.1 0.23 11.1 0.1 1.4 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type CTP_transf_like PF01467.26 gi|294495780|ref|YP_003542273.1| - 1.3e-22 80.6 0.0 1.5e-22 80.3 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|294495780|ref|YP_003542273.1| - 0.0096 15.8 0.1 0.097 12.6 0.1 2.2 1 1 0 1 1 1 1 FAD synthetase HIGH_NTase1 PF05636.11 gi|294495780|ref|YP_003542273.1| - 0.012 14.9 0.0 1.6 7.9 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase Urm1 PF09138.11 gi|294495780|ref|YP_003542273.1| - 0.087 13.2 0.1 0.12 12.8 0.1 1.2 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) Aminotran_1_2 PF00155.21 gi|294495781|ref|YP_003542274.1| - 1.6e-67 228.2 0.0 1.9e-67 228.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|294495781|ref|YP_003542274.1| - 1.2e-05 24.5 0.0 0.0014 17.6 0.0 2.2 2 0 0 2 2 2 2 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|294495781|ref|YP_003542274.1| - 0.0051 15.4 0.0 0.008 14.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|294495781|ref|YP_003542274.1| - 0.0084 15.5 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Rsbr_N PF08678.10 gi|294495781|ref|YP_003542274.1| - 0.073 13.2 0.0 0.25 11.4 0.0 1.9 2 0 0 2 2 2 0 Rsbr N terminal Beta_elim_lyase PF01212.21 gi|294495781|ref|YP_003542274.1| - 0.15 11.3 0.0 0.56 9.4 0.0 1.9 2 1 0 2 2 2 0 Beta-eliminating lyase DMRL_synthase PF00885.19 gi|294495782|ref|YP_003542275.1| - 1.1e-30 106.3 0.1 1.2e-30 106.2 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DMRL_synthase PF00885.19 gi|294495783|ref|YP_003542276.1| - 3.1e-16 59.5 0.3 4.2e-16 59.0 0.3 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_5 PF00266.19 gi|294495784|ref|YP_003542277.1| - 8.3e-47 159.9 0.0 1e-46 159.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|294495784|ref|YP_003542277.1| - 0.001 18.3 0.0 0.0024 17.1 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|294495784|ref|YP_003542277.1| - 0.0019 17.6 0.1 0.0045 16.3 0.0 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_3 PF00202.21 gi|294495784|ref|YP_003542277.1| - 0.037 12.7 0.0 0.12 11.0 0.0 1.8 1 1 0 1 1 1 0 Aminotransferase class-III CBS PF00571.28 gi|294495785|ref|YP_003542278.1| - 2.6e-16 59.8 2.9 8.7e-09 35.7 0.5 2.2 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 gi|294495785|ref|YP_003542278.1| - 3e-13 49.6 0.2 7.4e-13 48.4 0.2 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|294495785|ref|YP_003542278.1| - 7.3e-09 35.9 0.0 1.1e-08 35.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|294495785|ref|YP_003542278.1| - 2.2e-06 27.6 0.0 3.9e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|294495785|ref|YP_003542278.1| - 0.0011 18.9 0.1 0.0027 17.6 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|294495785|ref|YP_003542278.1| - 0.0033 17.3 0.0 0.0067 16.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Pou PF00157.17 gi|294495785|ref|YP_003542278.1| - 0.0036 17.2 0.1 0.018 15.0 0.0 2.1 2 1 0 2 2 2 1 Pou domain - N-terminal to homeobox domain HTH_26 PF13443.6 gi|294495785|ref|YP_003542278.1| - 0.043 14.2 0.0 0.094 13.2 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain TetR_N PF00440.23 gi|294495785|ref|YP_003542278.1| - 0.065 13.0 0.0 4.5 7.2 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family EF-hand_6 PF13405.6 gi|294495785|ref|YP_003542278.1| - 0.089 12.8 0.1 5.4 7.2 0.0 2.4 2 0 0 2 2 2 0 EF-hand domain Glyoxalase PF00903.25 gi|294495785|ref|YP_003542278.1| - 0.14 12.4 0.0 0.21 11.8 0.0 1.3 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Na_Ca_ex PF01699.24 gi|294495786|ref|YP_003542279.1| - 4.5e-53 179.3 28.0 4.4e-29 101.4 8.1 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Usp PF00582.26 gi|294495787|ref|YP_003542280.1| - 2.2e-20 73.6 0.0 2.4e-20 73.5 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family GARS_N PF02844.15 gi|294495787|ref|YP_003542280.1| - 0.063 14.1 0.1 0.13 13.1 0.1 1.7 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain VIT1 PF01988.19 gi|294495788|ref|YP_003542281.1| - 1.7e-14 54.2 16.2 5.3e-09 36.3 2.5 2.0 1 1 1 2 2 2 2 VIT family DUF1700 PF08006.11 gi|294495788|ref|YP_003542281.1| - 0.33 10.5 6.4 0.77 9.3 6.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1700) DUF3149 PF11346.8 gi|294495788|ref|YP_003542281.1| - 2.1 8.1 0.0 2.1 8.1 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3149) Response_reg PF00072.24 gi|294495789|ref|YP_003542282.1| - 2.9e-21 75.7 2.8 3.3e-21 75.5 2.8 1.0 1 0 0 1 1 1 1 Response regulator receiver domain 3HCDH_RFF PF18321.1 gi|294495789|ref|YP_003542282.1| - 0.02 15.3 0.0 0.034 14.6 0.0 1.3 1 0 0 1 1 1 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain SIS PF01380.22 gi|294495789|ref|YP_003542282.1| - 0.045 13.6 0.1 0.061 13.2 0.1 1.2 1 0 0 1 1 1 0 SIS domain FleQ PF06490.11 gi|294495789|ref|YP_003542282.1| - 0.15 12.4 0.0 0.19 12.1 0.0 1.1 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ Desulfoferrodox PF01880.18 gi|294495790|ref|YP_003542283.1| - 5.6e-30 103.8 0.1 9.4e-30 103.1 0.1 1.3 1 1 0 1 1 1 1 Desulfoferrodoxin Cytochrom_C_asm PF01578.20 gi|294495791|ref|YP_003542284.1| - 0.0011 18.8 0.8 0.0012 18.6 0.8 1.0 1 0 0 1 1 1 1 Cytochrome C assembly protein FtsX PF02687.21 gi|294495791|ref|YP_003542284.1| - 0.0015 18.9 4.5 0.0019 18.6 4.5 1.1 1 0 0 1 1 1 1 FtsX-like permease family PalH PF08733.10 gi|294495791|ref|YP_003542284.1| - 0.036 13.1 4.4 0.042 12.9 4.4 1.0 1 0 0 1 1 1 0 PalH/RIM21 AA_permease PF00324.21 gi|294495793|ref|YP_003542286.1| - 5e-39 134.2 38.2 6.4e-39 133.9 38.2 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|294495793|ref|YP_003542286.1| - 2e-23 82.9 41.7 2.7e-23 82.5 41.7 1.1 1 0 0 1 1 1 1 Amino acid permease B12-binding_2 PF02607.17 gi|294495795|ref|YP_003542288.1| - 1.9e-20 73.1 0.1 4e-20 72.0 0.1 1.6 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.19 gi|294495795|ref|YP_003542288.1| - 1.9e-17 63.4 0.9 2.8e-17 62.9 0.4 1.5 2 0 0 2 2 2 1 B12 binding domain Blt1 PF12754.7 gi|294495795|ref|YP_003542288.1| - 0.11 12.8 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Blt1 N-terminal domain MCH PF02289.16 gi|294495796|ref|YP_003542289.1| - 1.9e-135 451.2 0.0 2.1e-135 451.0 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) HTH_54 PF18607.1 gi|294495796|ref|YP_003542289.1| - 0.16 12.0 0.0 0.5 10.5 0.0 1.7 2 0 0 2 2 2 0 ParA helix turn helix domain DUF2124 PF09897.9 gi|294495797|ref|YP_003542290.1| - 4.7e-53 178.9 0.0 5.4e-53 178.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) Met_10 PF02475.16 gi|294495798|ref|YP_003542291.1| - 3e-58 196.9 0.0 4.2e-58 196.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|294495798|ref|YP_003542291.1| - 3.9e-08 33.1 0.0 8.6e-08 32.0 0.0 1.6 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_15 PF09445.10 gi|294495798|ref|YP_003542291.1| - 0.0015 18.1 0.0 0.0022 17.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|294495798|ref|YP_003542291.1| - 0.0024 17.4 0.0 0.0041 16.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TRM PF02005.16 gi|294495798|ref|YP_003542291.1| - 0.085 12.0 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase V4R PF02830.18 gi|294495799|ref|YP_003542292.1| - 8.4e-18 64.2 0.7 2e-17 62.9 0.7 1.6 1 0 0 1 1 1 1 V4R domain HTH_5 PF01022.20 gi|294495799|ref|YP_003542292.1| - 3.2e-11 42.9 0.0 5.3e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|294495799|ref|YP_003542292.1| - 0.0001 22.1 0.0 0.00016 21.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|294495799|ref|YP_003542292.1| - 0.00075 19.5 0.0 0.0013 18.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|294495799|ref|YP_003542292.1| - 0.0022 17.8 0.0 0.0036 17.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|294495799|ref|YP_003542292.1| - 0.0062 16.1 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DprA_WH PF17782.1 gi|294495799|ref|YP_003542292.1| - 0.04 14.0 0.0 0.064 13.4 0.0 1.2 1 0 0 1 1 1 0 DprA winged helix domain MarR PF01047.22 gi|294495799|ref|YP_003542292.1| - 0.12 12.4 0.1 0.22 11.5 0.1 1.5 1 0 0 1 1 1 0 MarR family DUF2110 PF09883.9 gi|294495800|ref|YP_003542293.1| - 1.4e-87 293.0 0.2 1.5e-87 292.9 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) DUF150_C PF17384.2 gi|294495800|ref|YP_003542293.1| - 0.16 12.1 1.5 0.34 11.1 0.1 2.2 2 1 1 3 3 3 0 RimP C-terminal SH3 domain ELK PF03789.13 gi|294495800|ref|YP_003542293.1| - 3.2 8.0 5.1 4.7 7.4 0.3 2.6 3 0 0 3 3 3 0 ELK domain HOOK PF05622.12 gi|294495801|ref|YP_003542294.1| - 3.1e-05 22.3 0.3 3.9e-05 22.0 0.3 1.1 1 0 0 1 1 1 1 HOOK protein EzrA PF06160.12 gi|294495801|ref|YP_003542294.1| - 4.1e-05 22.0 0.5 6.1e-05 21.4 0.5 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA HTH_27 PF13463.6 gi|294495801|ref|YP_003542294.1| - 6e-05 23.5 0.1 0.00061 20.2 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF2250 PF10007.9 gi|294495801|ref|YP_003542294.1| - 0.0028 17.7 0.2 0.0078 16.3 0.0 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.22 gi|294495801|ref|YP_003542294.1| - 0.0066 16.4 0.1 0.017 15.0 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|294495801|ref|YP_003542294.1| - 0.0082 16.1 2.1 0.012 15.6 0.4 2.1 3 0 0 3 3 3 1 Winged helix-turn-helix TrmB PF01978.19 gi|294495801|ref|YP_003542294.1| - 0.016 15.1 0.5 2.4 8.1 0.0 2.9 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Laminin_I PF06008.14 gi|294495801|ref|YP_003542294.1| - 0.023 14.4 0.3 0.043 13.5 0.0 1.5 2 0 0 2 2 2 0 Laminin Domain I CHASE3 PF05227.13 gi|294495801|ref|YP_003542294.1| - 0.032 14.1 0.2 0.048 13.6 0.2 1.3 1 0 0 1 1 1 0 CHASE3 domain Met_synt_B12 PF02965.17 gi|294495801|ref|YP_003542294.1| - 0.08 12.4 0.4 0.58 9.6 0.4 2.0 1 1 0 1 1 1 0 Vitamin B12 dependent methionine synthase, activation domain DUF4364 PF14277.6 gi|294495801|ref|YP_003542294.1| - 0.085 12.6 2.1 0.42 10.3 1.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4364) DUF724 PF05266.14 gi|294495801|ref|YP_003542294.1| - 0.1 12.4 0.3 0.13 12.1 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) TRM PF02005.16 gi|294495802|ref|YP_003542295.1| - 9.4e-105 350.9 0.0 1.1e-104 350.6 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.15 gi|294495802|ref|YP_003542295.1| - 0.021 14.5 0.0 0.045 13.4 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical protein 95 TPR_5 PF12688.7 gi|294495802|ref|YP_003542295.1| - 0.12 12.6 0.2 0.23 11.7 0.2 1.4 1 0 0 1 1 1 0 Tetratrico peptide repeat DUF2206 PF09971.9 gi|294495803|ref|YP_003542296.1| - 0.12 11.1 0.0 0.14 10.9 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) Cupin_2 PF07883.11 gi|294495804|ref|YP_003542297.1| - 6.4e-16 57.8 0.5 9.1e-16 57.3 0.5 1.2 1 0 0 1 1 1 1 Cupin domain HTH_3 PF01381.22 gi|294495804|ref|YP_003542297.1| - 5.8e-09 35.9 0.0 8e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|294495804|ref|YP_003542297.1| - 1.1e-08 35.3 0.0 1.6e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.19 gi|294495804|ref|YP_003542297.1| - 2.9e-06 27.2 0.2 4.6e-06 26.6 0.2 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|294495804|ref|YP_003542297.1| - 1.7e-05 24.4 0.0 3e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) HTH_26 PF13443.6 gi|294495804|ref|YP_003542297.1| - 0.00022 21.6 0.0 0.00032 21.1 0.0 1.3 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.7 gi|294495804|ref|YP_003542297.1| - 0.0012 18.8 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|294495804|ref|YP_003542297.1| - 0.048 13.6 0.1 0.074 13.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Cupin_7 PF12973.7 gi|294495804|ref|YP_003542297.1| - 0.065 13.2 0.0 0.098 12.6 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain HTH_25 PF13413.6 gi|294495804|ref|YP_003542297.1| - 0.088 12.7 0.4 0.21 11.5 0.4 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain 4HBT_2 PF13279.6 gi|294495805|ref|YP_003542298.1| - 2.8e-08 34.3 0.0 3.3e-08 34.1 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|294495805|ref|YP_003542298.1| - 4.2e-07 30.2 0.0 6.4e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|294495805|ref|YP_003542298.1| - 0.00017 21.0 0.0 0.015 14.6 0.0 2.1 2 0 0 2 2 2 2 Acyl-ACP thioesterase AMP-binding PF00501.28 gi|294495806|ref|YP_003542299.1| - 2.5e-113 378.9 0.1 3e-113 378.6 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|294495806|ref|YP_003542299.1| - 2.9e-17 63.4 0.0 6.7e-17 62.2 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Thioredoxin PF00085.20 gi|294495807|ref|YP_003542300.1| - 1.2e-10 41.3 0.0 2e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Response_reg PF00072.24 gi|294495808|ref|YP_003542301.1| - 1.9e-24 86.0 0.2 2.2e-24 85.8 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain HisKA_2 PF07568.12 gi|294495809|ref|YP_003542302.1| - 2.8e-27 94.6 5.1 2.8e-27 94.6 5.1 2.5 3 0 0 3 3 3 1 Histidine kinase dCache_1 PF02743.18 gi|294495809|ref|YP_003542302.1| - 1.6e-23 83.8 2.3 1.6e-23 83.8 2.3 2.3 2 1 0 2 2 2 1 Cache domain PAS_3 PF08447.12 gi|294495809|ref|YP_003542302.1| - 1.1e-14 54.5 0.0 2.3e-14 53.4 0.0 1.6 1 0 0 1 1 1 1 PAS fold HWE_HK PF07536.14 gi|294495809|ref|YP_003542302.1| - 0.00029 21.5 0.5 0.00077 20.1 0.5 1.7 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c PF02518.26 gi|294495809|ref|YP_003542302.1| - 0.00032 21.2 0.6 0.00092 19.7 0.1 2.2 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|294495809|ref|YP_003542302.1| - 0.0013 19.0 0.1 0.0033 17.7 0.1 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|294495809|ref|YP_003542302.1| - 0.0043 17.0 0.0 0.0088 16.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain sCache_2 PF17200.4 gi|294495809|ref|YP_003542302.1| - 0.035 13.9 0.0 0.11 12.4 0.0 1.8 1 0 0 1 1 1 0 Single Cache domain 2 dCache_2 PF08269.11 gi|294495809|ref|YP_003542302.1| - 0.045 12.9 0.0 0.045 12.9 0.0 2.7 3 0 0 3 3 3 0 Cache domain SPOB_a PF14689.6 gi|294495809|ref|YP_003542302.1| - 0.053 13.2 0.1 0.15 11.8 0.1 1.9 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain DUF1724 PF08350.10 gi|294495810|ref|YP_003542303.1| - 9.8e-18 64.1 0.1 2.3e-17 62.9 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|294495810|ref|YP_003542303.1| - 0.00015 21.6 0.2 0.00028 20.7 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|294495810|ref|YP_003542303.1| - 0.00057 19.7 0.1 0.0041 17.0 0.0 2.2 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|294495810|ref|YP_003542303.1| - 0.0047 16.8 0.3 0.035 14.0 0.0 2.4 3 0 0 3 3 3 1 MarR family HTH_27 PF13463.6 gi|294495810|ref|YP_003542303.1| - 0.0067 16.9 0.0 0.013 16.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|294495810|ref|YP_003542303.1| - 0.0092 15.9 0.0 0.025 14.6 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix HemN_C PF06969.16 gi|294495810|ref|YP_003542303.1| - 0.011 15.8 0.0 0.025 14.6 0.0 1.7 2 0 0 2 2 2 0 HemN C-terminal domain DUF3969 PF13108.6 gi|294495810|ref|YP_003542303.1| - 0.017 15.1 0.0 0.039 14.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3969) HTH_11 PF08279.12 gi|294495810|ref|YP_003542303.1| - 0.023 14.6 0.2 0.12 12.3 0.1 2.2 2 0 0 2 2 2 0 HTH domain Fur_reg_FbpA PF13076.6 gi|294495810|ref|YP_003542303.1| - 0.032 13.9 0.9 0.17 11.6 0.2 2.3 2 0 0 2 2 2 0 Fur-regulated basic protein A DIM1 PF02966.16 gi|294495810|ref|YP_003542303.1| - 0.074 12.8 0.2 0.31 10.8 0.1 2.0 1 1 1 2 2 2 0 Mitosis protein DIM1 HTH_34 PF13601.6 gi|294495810|ref|YP_003542303.1| - 0.098 12.8 0.0 0.43 10.8 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain PadR PF03551.14 gi|294495810|ref|YP_003542303.1| - 0.12 12.3 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Fe_dep_repress PF01325.19 gi|294495810|ref|YP_003542303.1| - 0.13 12.4 0.1 1.1 9.5 0.0 2.5 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain DUF1724 PF08350.10 gi|294495811|ref|YP_003542304.1| - 1.8e-23 82.4 0.1 3.7e-23 81.4 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|294495811|ref|YP_003542304.1| - 0.11 12.3 0.5 0.33 10.9 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|294495811|ref|YP_003542304.1| - 0.12 12.4 0.6 0.3 11.1 0.6 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix B12-binding_2 PF02607.17 gi|294495812|ref|YP_003542305.1| - 1.9e-20 73.1 0.1 4e-20 72.0 0.1 1.6 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.19 gi|294495812|ref|YP_003542305.1| - 1.9e-17 63.4 0.9 2.8e-17 62.9 0.4 1.5 2 0 0 2 2 2 1 B12 binding domain Blt1 PF12754.7 gi|294495812|ref|YP_003542305.1| - 0.11 12.8 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Blt1 N-terminal domain HTH_32 PF13565.6 gi|294495813|ref|YP_003542306.1| - 7.9e-11 42.4 0.0 1.2e-10 41.8 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|294495813|ref|YP_003542306.1| - 1.8e-07 31.0 0.0 3e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|294495813|ref|YP_003542306.1| - 2.3e-06 27.2 0.1 4.5e-06 26.3 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.6 gi|294495813|ref|YP_003542306.1| - 0.00042 19.9 0.0 0.0021 17.7 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|294495813|ref|YP_003542306.1| - 0.0058 16.7 0.4 0.011 15.9 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain LZ_Tnp_IS481 PF13011.6 gi|294495813|ref|YP_003542306.1| - 0.016 15.7 0.0 0.022 15.3 0.0 1.3 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 DUF89 PF01937.19 gi|294495814|ref|YP_003542307.1| - 1.5e-54 185.3 0.1 1.6e-54 185.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 DUF2099 PF09872.9 gi|294495814|ref|YP_003542307.1| - 0.041 13.1 0.1 0.071 12.3 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2099) CooT PF10133.9 gi|294495815|ref|YP_003542308.1| - 1e-18 67.4 1.4 1.1e-18 67.2 1.4 1.0 1 0 0 1 1 1 1 CO dehydrogenase accessory protein CooT DUF2096 PF09869.9 gi|294495815|ref|YP_003542308.1| - 0.041 14.0 0.4 0.046 13.8 0.4 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2096) Gp_dh_C PF02800.20 gi|294495816|ref|YP_003542309.1| - 1.6e-28 99.3 0.0 2.4e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|294495816|ref|YP_003542309.1| - 1.1e-10 41.7 0.2 2.2e-10 40.7 0.2 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|294495816|ref|YP_003542309.1| - 5e-06 26.8 1.6 2.3e-05 24.6 0.9 2.5 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|294495816|ref|YP_003542309.1| - 0.00051 20.7 0.0 0.0017 19.0 0.0 1.9 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|294495816|ref|YP_003542309.1| - 0.0013 18.1 0.3 0.029 13.7 0.3 2.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|294495816|ref|YP_003542309.1| - 0.0028 18.1 0.0 0.006 17.0 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|294495816|ref|YP_003542309.1| - 0.0035 17.6 0.0 0.01 16.1 0.0 1.8 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|294495816|ref|YP_003542309.1| - 0.044 14.6 0.0 0.1 13.4 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.12 gi|294495816|ref|YP_003542309.1| - 0.075 12.6 0.1 0.66 9.5 0.0 2.2 1 1 1 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Inositol_P PF00459.25 gi|294495817|ref|YP_003542310.1| - 6.2e-35 121.0 0.0 7.5e-35 120.8 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|294495817|ref|YP_003542310.1| - 0.0057 16.1 0.0 0.0089 15.5 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain NAD_kinase PF01513.21 gi|294495818|ref|YP_003542311.1| - 7.7e-54 182.9 0.3 1e-53 182.5 0.3 1.2 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|294495818|ref|YP_003542311.1| - 0.0073 15.9 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain HMGL-like PF00682.19 gi|294495819|ref|YP_003542312.1| - 4.9e-78 262.3 2.0 6.5e-78 261.9 2.0 1.2 1 0 0 1 1 1 1 HMGL-like DUF561 PF04481.12 gi|294495819|ref|YP_003542312.1| - 0.0016 17.6 0.3 0.82 8.8 0.0 3.0 3 0 0 3 3 3 2 Protein of unknown function (DUF561) ComA PF02679.15 gi|294495819|ref|YP_003542312.1| - 0.021 14.3 0.6 0.57 9.6 0.0 2.4 3 0 0 3 3 3 0 (2R)-phospho-3-sulfolactate synthase (ComA) NYN PF01936.18 gi|294495820|ref|YP_003542313.1| - 2.9e-24 86.2 0.0 3.9e-24 85.8 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF460 PF04312.13 gi|294495820|ref|YP_003542313.1| - 0.15 11.8 0.0 3.2 7.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF460) Rhomboid PF01694.22 gi|294495822|ref|YP_003542315.1| - 6.8e-35 120.3 16.5 6.8e-35 120.3 16.5 1.6 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.16 gi|294495822|ref|YP_003542315.1| - 1.9e-12 47.1 5.2 2.7e-12 46.6 5.2 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.10 gi|294495822|ref|YP_003542315.1| - 1.7e-05 25.3 0.9 1.7e-05 25.3 0.9 2.4 1 1 1 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) zf-ribbon_3 PF13248.6 gi|294495822|ref|YP_003542315.1| - 0.0046 16.3 2.4 0.008 15.5 2.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-HIT PF04438.16 gi|294495822|ref|YP_003542315.1| - 0.043 13.7 5.5 0.069 13.0 5.5 1.3 1 0 0 1 1 1 0 HIT zinc finger FYVE PF01363.21 gi|294495822|ref|YP_003542315.1| - 0.048 13.8 1.1 0.087 13.0 1.1 1.4 1 0 0 1 1 1 0 FYVE zinc finger C5HCH PF17982.1 gi|294495822|ref|YP_003542315.1| - 0.049 13.8 2.4 0.09 12.9 2.4 1.4 1 0 0 1 1 1 0 NSD Cys-His rich domain PyrI_C PF02748.15 gi|294495822|ref|YP_003542315.1| - 0.23 11.4 3.6 0.39 10.6 3.6 1.4 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Transp_Tc5_C PF04236.15 gi|294495822|ref|YP_003542315.1| - 0.41 11.0 4.0 0.69 10.3 4.0 1.4 1 0 0 1 1 1 0 Tc5 transposase C-terminal domain zf-C2H2_4 PF13894.6 gi|294495822|ref|YP_003542315.1| - 0.78 10.7 6.0 0.85 10.6 3.1 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger Prismane PF03063.20 gi|294495823|ref|YP_003542316.1| - 1.8e-115 386.6 3.4 1.7e-97 327.3 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_9 PF13187.6 gi|294495823|ref|YP_003542316.1| - 7.6e-08 32.4 5.4 7.6e-08 32.4 5.4 2.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|294495823|ref|YP_003542316.1| - 1.4e-06 27.9 10.9 1.9e-05 24.3 2.9 4.0 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294495823|ref|YP_003542316.1| - 3.4e-06 27.6 10.6 3.4e-06 27.6 10.6 3.1 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294495823|ref|YP_003542316.1| - 3.5e-06 27.0 20.6 7.1e-05 22.8 11.0 3.3 2 1 1 3 3 2 2 4Fe-4S dicluster domain CODH_A_N PF18537.1 gi|294495823|ref|YP_003542316.1| - 9.4e-06 25.6 0.0 4.8e-05 23.3 0.0 2.2 2 0 0 2 2 2 1 Carbon monoxide dehydrogenase subunit alpha N-terminal domain Fer4_21 PF14697.6 gi|294495823|ref|YP_003542316.1| - 7.3e-05 22.8 6.7 7.3e-05 22.8 6.7 2.9 3 0 0 3 3 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495823|ref|YP_003542316.1| - 0.00013 22.8 9.5 0.067 14.1 0.4 4.1 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|294495823|ref|YP_003542316.1| - 0.00026 21.5 5.9 0.0061 17.1 0.8 4.1 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294495823|ref|YP_003542316.1| - 0.0018 18.3 2.4 0.0018 18.3 2.4 4.1 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|294495823|ref|YP_003542316.1| - 0.003 17.6 2.1 0.003 17.6 2.1 3.5 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|294495823|ref|YP_003542316.1| - 0.0042 16.8 8.1 0.037 13.8 0.4 2.7 1 1 1 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_8 PF13183.6 gi|294495823|ref|YP_003542316.1| - 0.012 16.0 12.4 0.012 16.0 12.4 3.2 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294495823|ref|YP_003542316.1| - 0.018 15.5 1.7 0.018 15.5 1.7 3.4 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|294495823|ref|YP_003542316.1| - 0.2 11.8 7.5 19 5.5 2.3 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|294495823|ref|YP_003542316.1| - 9.7 6.8 11.4 5.4 7.6 3.0 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CO_dh PF02552.16 gi|294495824|ref|YP_003542317.1| - 7.7e-33 113.6 0.0 9.4e-33 113.4 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.22 gi|294495824|ref|YP_003542317.1| - 1.9e-07 30.9 0.0 3e-07 30.3 0.0 1.3 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CdhC PF03598.15 gi|294495825|ref|YP_003542318.1| - 1e-64 217.1 0.5 1.4e-64 216.6 0.5 1.2 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit MatP_C PF17414.2 gi|294495825|ref|YP_003542318.1| - 0.028 14.6 0.2 0.3 11.3 0.0 2.4 2 0 0 2 2 2 0 MatP C-terminal ribbon-helix-helix domain Polysacc_synt_4 PF04669.13 gi|294495825|ref|YP_003542318.1| - 0.055 13.0 0.1 0.09 12.3 0.1 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis CbiA PF01656.23 gi|294495826|ref|YP_003542319.1| - 1.3e-20 73.8 0.1 1.8e-20 73.3 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|294495826|ref|YP_003542319.1| - 3.8e-17 62.8 0.0 5.2e-17 62.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|294495826|ref|YP_003542319.1| - 3.4e-14 52.9 0.6 7.1e-14 51.9 0.6 1.4 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|294495826|ref|YP_003542319.1| - 6.4e-09 35.6 0.8 7.3e-08 32.2 0.8 2.1 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|294495826|ref|YP_003542319.1| - 3e-08 33.2 1.5 1.9e-07 30.6 1.5 2.1 1 1 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|294495826|ref|YP_003542319.1| - 6.5e-08 32.3 0.1 3.4e-07 30.0 0.1 2.1 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Toprim PF01751.22 gi|294495826|ref|YP_003542319.1| - 0.00018 21.7 0.1 0.048 13.9 0.0 2.4 2 0 0 2 2 2 1 Toprim domain AAA_26 PF13500.6 gi|294495826|ref|YP_003542319.1| - 0.00018 21.4 0.1 0.053 13.3 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|294495826|ref|YP_003542319.1| - 0.00025 21.5 0.0 0.0004 20.8 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain Toprim_4 PF13662.6 gi|294495826|ref|YP_003542319.1| - 0.00044 20.7 0.1 0.025 15.1 0.0 2.5 2 0 0 2 2 2 1 Toprim domain ABC_tran PF00005.27 gi|294495826|ref|YP_003542319.1| - 0.0018 18.8 0.5 0.0075 16.8 0.5 2.0 1 1 0 1 1 1 1 ABC transporter RsgA_GTPase PF03193.16 gi|294495826|ref|YP_003542319.1| - 0.0077 16.2 0.9 0.4 10.6 0.1 2.2 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|294495826|ref|YP_003542319.1| - 0.011 16.0 0.0 0.035 14.4 0.0 1.9 2 1 0 2 2 2 0 AAA domain Toprim_2 PF13155.6 gi|294495826|ref|YP_003542319.1| - 0.012 16.1 0.1 5.7 7.4 0.0 2.4 2 0 0 2 2 2 0 Toprim-like PhoH PF02562.16 gi|294495826|ref|YP_003542319.1| - 0.012 15.0 0.0 0.024 14.1 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_19 PF13245.6 gi|294495826|ref|YP_003542319.1| - 0.016 15.5 1.4 0.41 11.0 0.3 2.2 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|294495826|ref|YP_003542319.1| - 0.018 14.9 0.3 0.037 13.9 0.0 1.7 2 0 0 2 2 1 0 Adenylylsulphate kinase AAA_7 PF12775.7 gi|294495826|ref|YP_003542319.1| - 0.018 14.5 0.0 0.064 12.8 0.1 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region NTPase_1 PF03266.15 gi|294495826|ref|YP_003542319.1| - 0.027 14.4 7.0 0.92 9.4 0.5 2.3 2 0 0 2 2 2 0 NTPase AAA_30 PF13604.6 gi|294495826|ref|YP_003542319.1| - 0.033 13.9 0.0 0.088 12.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|294495826|ref|YP_003542319.1| - 0.039 14.0 0.2 0.099 12.7 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|294495826|ref|YP_003542319.1| - 0.04 14.5 0.0 0.1 13.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|294495826|ref|YP_003542319.1| - 0.041 13.9 0.5 0.13 12.3 0.0 2.0 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit RNA_helicase PF00910.22 gi|294495826|ref|YP_003542319.1| - 0.052 14.0 0.0 0.82 10.1 0.0 2.3 2 0 0 2 2 2 0 RNA helicase Usp PF00582.26 gi|294495826|ref|YP_003542319.1| - 0.08 13.4 0.1 1.3 9.6 0.1 2.5 2 1 0 2 2 2 0 Universal stress protein family PRK PF00485.18 gi|294495826|ref|YP_003542319.1| - 0.085 12.6 0.5 0.14 11.8 0.5 1.7 1 1 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family CoA_binding_3 PF13727.6 gi|294495826|ref|YP_003542319.1| - 0.093 12.7 0.0 3.4 7.6 0.0 2.3 2 0 0 2 2 2 0 CoA-binding domain DUF2075 PF09848.9 gi|294495826|ref|YP_003542319.1| - 0.094 11.9 0.0 0.17 11.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Fib_alpha PF08702.10 gi|294495826|ref|YP_003542319.1| - 0.096 12.9 0.2 0.21 11.7 0.1 1.6 2 0 0 2 2 1 0 Fibrinogen alpha/beta chain family DUF87 PF01935.17 gi|294495826|ref|YP_003542319.1| - 0.099 12.7 3.3 0.19 11.8 0.4 2.3 2 1 0 2 2 2 0 Helicase HerA, central domain Zeta_toxin PF06414.12 gi|294495826|ref|YP_003542319.1| - 0.1 11.9 0.1 0.26 10.6 0.1 1.6 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.9 gi|294495826|ref|YP_003542319.1| - 0.1 11.5 0.6 0.21 10.4 0.6 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_25 PF13481.6 gi|294495826|ref|YP_003542319.1| - 0.11 12.1 1.6 0.72 9.4 0.2 2.5 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|294495826|ref|YP_003542319.1| - 0.11 12.2 2.1 3.1 7.5 2.1 2.5 1 1 0 1 1 1 0 AAA domain PP2C_2 PF13672.6 gi|294495826|ref|YP_003542319.1| - 0.16 11.6 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 Protein phosphatase 2C SRP54 PF00448.22 gi|294495826|ref|YP_003542319.1| - 0.84 9.2 5.9 3.2 7.4 0.7 2.5 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain CdhD PF03599.16 gi|294495827|ref|YP_003542320.1| - 6.5e-87 291.7 4.1 7.9e-80 268.4 0.3 3.1 1 1 2 3 3 3 3 CO dehydrogenase/acetyl-CoA synthase delta subunit His_biosynth PF00977.21 gi|294495827|ref|YP_003542320.1| - 0.02 14.4 0.0 0.034 13.6 0.0 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein GDPD PF03009.17 gi|294495827|ref|YP_003542320.1| - 0.13 12.0 0.1 0.25 11.0 0.1 1.4 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family CdhD PF03599.16 gi|294495828|ref|YP_003542321.1| - 1.3e-149 498.2 0.7 1.5e-149 497.9 0.7 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.13 gi|294495828|ref|YP_003542321.1| - 3.5e-13 48.9 0.8 6.6e-13 48.1 0.8 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster DUF362 PF04015.12 gi|294495829|ref|YP_003542322.1| - 1.1e-39 136.8 0.2 2.6e-39 135.6 0.1 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|294495829|ref|YP_003542322.1| - 7.9e-14 50.8 23.3 3.7e-09 36.0 5.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|294495829|ref|YP_003542322.1| - 1.1e-12 47.5 21.2 1.4e-08 34.4 4.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|294495829|ref|YP_003542322.1| - 1.5e-10 41.0 15.3 3.7e-07 30.2 1.4 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294495829|ref|YP_003542322.1| - 7.1e-10 38.4 15.2 0.00011 22.1 3.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294495829|ref|YP_003542322.1| - 1.1e-08 35.5 16.4 6.7e-08 33.0 16.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495829|ref|YP_003542322.1| - 1.4e-08 35.5 5.8 0.00035 21.5 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|294495829|ref|YP_003542322.1| - 3.7e-08 33.4 18.6 1.2e-07 31.7 18.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294495829|ref|YP_003542322.1| - 3.8e-07 30.2 16.0 8.3e-07 29.1 16.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|294495829|ref|YP_003542322.1| - 4e-07 30.4 4.7 0.0033 17.8 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|294495829|ref|YP_003542322.1| - 2.7e-06 27.8 6.1 0.0092 16.5 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294495829|ref|YP_003542322.1| - 3.8e-05 23.9 13.8 0.0021 18.5 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|294495829|ref|YP_003542322.1| - 0.0056 17.5 12.4 0.064 14.1 1.9 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Lar_N PF09861.9 gi|294495829|ref|YP_003542322.1| - 0.014 14.6 1.1 0.022 13.9 1.1 1.2 1 0 0 1 1 1 0 Lactate racemase N-terminal domain Fer4_3 PF12798.7 gi|294495829|ref|YP_003542322.1| - 0.019 15.8 6.0 0.019 15.8 6.0 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|294495829|ref|YP_003542322.1| - 0.025 15.3 17.2 0.27 12.0 4.5 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|294495829|ref|YP_003542322.1| - 0.1 13.2 17.6 0.13 12.8 3.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I COX3 PF00510.18 gi|294495829|ref|YP_003542322.1| - 0.15 11.8 0.1 0.22 11.3 0.1 1.2 1 0 0 1 1 1 0 Cytochrome c oxidase subunit III Fer4_18 PF13746.6 gi|294495829|ref|YP_003542322.1| - 0.65 10.2 14.8 1.1 9.5 3.0 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Semialdhyde_dhC PF02774.18 gi|294495830|ref|YP_003542323.1| - 2.9e-45 154.6 0.0 3.8e-45 154.2 0.0 1.1 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|294495830|ref|YP_003542323.1| - 2.7e-32 111.7 0.0 5.6e-32 110.7 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|294495830|ref|YP_003542323.1| - 0.042 14.0 0.0 0.084 13.0 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NmrA PF05368.13 gi|294495830|ref|YP_003542323.1| - 0.096 12.2 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family Ldh_1_N PF00056.23 gi|294495830|ref|YP_003542323.1| - 0.11 12.6 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|294495830|ref|YP_003542323.1| - 0.13 12.9 0.1 0.38 11.4 0.0 1.9 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent CobN-Mg_chel PF02514.16 gi|294495831|ref|YP_003542324.1| - 1.1e-287 957.3 3.3 1.4e-287 956.9 3.3 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase Lipoprotein_Ltp PF07553.11 gi|294495831|ref|YP_003542324.1| - 0.013 15.8 0.9 0.068 13.4 0.9 2.3 1 0 0 1 1 1 0 Host cell surface-exposed lipoprotein MGC-24 PF05283.11 gi|294495831|ref|YP_003542324.1| - 0.11 12.9 2.9 0.22 12.0 2.9 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin InvH PF04741.12 gi|294495831|ref|YP_003542324.1| - 1.5 8.7 4.5 2.5 8.0 0.2 3.0 3 0 0 3 3 3 0 InvH outer membrane lipoprotein CobN-Mg_chel PF02514.16 gi|294495832|ref|YP_003542325.1| - 0 1086.3 2.9 0 1086.1 2.9 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CarboxypepD_reg PF13620.6 gi|294495832|ref|YP_003542325.1| - 2.2e-14 53.5 8.6 0.0018 18.5 0.1 4.6 4 0 0 4 4 4 3 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|294495832|ref|YP_003542325.1| - 9.7e-11 41.5 0.1 0.13 12.3 0.0 3.8 3 0 0 3 3 3 3 CarboxypepD_reg-like domain SpaA PF17802.1 gi|294495832|ref|YP_003542325.1| - 5e-07 29.9 0.7 1.2 9.5 0.0 3.9 3 0 0 3 3 3 3 Prealbumin-like fold domain DUF2012 PF09430.10 gi|294495832|ref|YP_003542325.1| - 4e-05 23.7 0.1 5.7 7.1 0.0 3.5 3 0 0 3 3 3 2 Protein of unknown function (DUF2012) fn3_3 PF14686.6 gi|294495832|ref|YP_003542325.1| - 6.1e-05 22.7 2.1 4.7 7.1 0.1 4.4 4 0 0 4 4 4 2 Polysaccharide lyase family 4, domain II SdrD_B PF17210.3 gi|294495832|ref|YP_003542325.1| - 0.00012 22.2 5.9 2.1 8.6 0.0 4.8 4 0 0 4 4 4 2 SdrD B-like domain ZIP4_domain PF18292.1 gi|294495832|ref|YP_003542325.1| - 0.37 10.7 2.6 0.27 11.1 0.5 1.8 2 0 0 2 2 2 0 Zinc transporter ZIP4 domain MGC-24 PF05283.11 gi|294495832|ref|YP_003542325.1| - 0.4 11.1 3.4 0.97 9.9 3.4 1.6 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin CobN-Mg_chel PF02514.16 gi|294495833|ref|YP_003542326.1| - 0 1134.8 4.3 0 1129.3 3.6 2.1 2 0 0 2 2 2 2 CobN/Magnesium Chelatase MGC-24 PF05283.11 gi|294495833|ref|YP_003542326.1| - 0.095 13.2 4.4 0.32 11.4 4.4 1.9 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Mucin PF01456.17 gi|294495833|ref|YP_003542326.1| - 0.38 10.7 7.1 1.7 8.7 7.1 2.1 1 0 0 1 1 1 0 Mucin-like glycoprotein PDZ_5 PF17817.1 gi|294495833|ref|YP_003542326.1| - 0.76 10.1 10.0 41 4.5 0.2 4.3 4 0 0 4 4 4 0 PDZ domain DUF2149 PF09919.9 gi|294495834|ref|YP_003542327.1| - 1.4e-35 121.4 0.2 1.7e-35 121.1 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) MotA_ExbB PF01618.16 gi|294495835|ref|YP_003542328.1| - 9.4e-13 48.0 0.8 1.4e-12 47.5 0.8 1.3 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family TMEM169 PF15052.6 gi|294495835|ref|YP_003542328.1| - 0.065 13.4 1.0 11 6.1 0.1 2.2 2 0 0 2 2 2 0 TMEM169 protein family Gram_pos_anchor PF00746.21 gi|294495835|ref|YP_003542328.1| - 0.39 10.7 3.5 1.4 9.0 1.6 2.4 2 0 0 2 2 2 0 LPXTG cell wall anchor motif DUF2162 PF09930.9 gi|294495836|ref|YP_003542329.1| - 2.7e-65 219.9 25.5 3e-65 219.8 25.5 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) NMD3 PF04981.13 gi|294495837|ref|YP_003542330.1| - 1.4e-55 188.4 2.9 1.8e-55 188.1 2.9 1.1 1 0 0 1 1 1 1 NMD3 family TF_Zn_Ribbon PF08271.12 gi|294495837|ref|YP_003542330.1| - 0.073 12.6 9.3 0.17 11.5 3.8 3.0 3 0 0 3 3 3 0 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|294495837|ref|YP_003542330.1| - 0.08 12.6 6.8 0.86 9.3 0.1 3.2 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Ribosomal_L37e PF01907.19 gi|294495837|ref|YP_003542330.1| - 0.09 12.9 0.6 0.09 12.9 0.6 2.8 3 0 0 3 3 3 0 Ribosomal protein L37e Nudix_N_2 PF14803.6 gi|294495837|ref|YP_003542330.1| - 0.12 12.3 9.5 0.48 10.4 0.1 4.0 4 0 0 4 4 4 0 Nudix N-terminal DZR PF12773.7 gi|294495837|ref|YP_003542330.1| - 0.19 11.8 8.1 2.1 8.5 2.7 3.2 2 1 0 2 2 2 0 Double zinc ribbon Rpr2 PF04032.16 gi|294495837|ref|YP_003542330.1| - 0.44 10.9 8.6 8 6.8 0.1 3.5 2 1 1 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zinc_ribbon_10 PF10058.9 gi|294495837|ref|YP_003542330.1| - 0.66 9.7 6.7 1.3 8.8 0.9 2.7 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn-ribbon_8 PF09723.10 gi|294495837|ref|YP_003542330.1| - 0.92 9.7 10.4 1.5 9.0 1.1 3.2 2 1 1 3 3 3 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|294495837|ref|YP_003542330.1| - 3.3 7.7 8.5 2.7 8.0 0.0 2.9 2 1 1 3 3 3 0 Putative transposase DNA-binding domain zinc_ribbon_15 PF17032.5 gi|294495837|ref|YP_003542330.1| - 5.3 7.9 12.7 1.8 9.3 6.9 2.9 2 2 0 2 2 2 0 zinc-ribbon family zf_UBZ PF18439.1 gi|294495837|ref|YP_003542330.1| - 5.8 6.6 6.9 4.1 7.1 0.1 3.1 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger ATP-grasp_3 PF02655.14 gi|294495838|ref|YP_003542331.1| - 1.6e-38 132.3 0.0 2.2e-38 131.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|294495838|ref|YP_003542331.1| - 2.4e-11 43.5 0.0 1.1e-10 41.4 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.17 gi|294495838|ref|YP_003542331.1| - 3.3e-10 39.8 0.0 5.9e-09 35.7 0.0 2.2 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|294495838|ref|YP_003542331.1| - 3.1e-08 33.2 0.1 6.1e-07 29.0 0.0 2.2 1 1 0 2 2 2 1 Sugar-transfer associated ATP-grasp GARS_A PF01071.19 gi|294495838|ref|YP_003542331.1| - 0.00022 21.0 0.2 0.62 9.8 0.0 3.1 2 1 0 3 3 3 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Dala_Dala_lig_C PF07478.13 gi|294495838|ref|YP_003542331.1| - 0.00028 20.5 0.0 0.0015 18.1 0.0 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.11 gi|294495838|ref|YP_003542331.1| - 0.0013 18.3 0.0 0.0075 15.9 0.0 2.1 1 1 0 1 1 1 1 RimK-like ATP-grasp domain TFIIE_alpha PF02002.17 gi|294495839|ref|YP_003542332.1| - 2.2e-16 59.6 0.4 3.6e-16 58.9 0.4 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit Rad50_zn_hook PF04423.14 gi|294495839|ref|YP_003542332.1| - 0.58 10.0 4.1 0.73 9.7 0.3 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif HD PF01966.22 gi|294495840|ref|YP_003542333.1| - 2.4e-14 53.6 0.5 3.5e-14 53.1 0.5 1.3 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|294495840|ref|YP_003542333.1| - 4.6e-05 23.0 0.0 0.00011 21.8 0.0 1.6 1 1 0 1 1 1 1 HDOD domain IF2_N PF04760.15 gi|294495840|ref|YP_003542333.1| - 0.00022 21.0 0.0 0.35 10.7 0.0 4.2 4 0 0 4 4 4 1 Translation initiation factor IF-2, N-terminal region HNH_repeat PF18780.1 gi|294495840|ref|YP_003542333.1| - 2.5 8.0 0.0 2.5 8.0 0.0 3.8 5 0 0 5 5 5 0 Homing endonuclease repeat PHP PF02811.19 gi|294495841|ref|YP_003542334.1| - 7.1e-11 42.7 0.0 1.2e-10 41.9 0.0 1.6 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|294495841|ref|YP_003542334.1| - 0.18 11.6 0.8 0.51 10.1 0.1 2.1 2 0 0 2 2 2 0 PHP-associated EMC3_TMCO1 PF01956.16 gi|294495842|ref|YP_003542335.1| - 1.8 8.3 4.8 1.7 8.3 4.8 1.0 1 0 0 1 1 1 0 Integral membrane protein EMC3/TMCO1-like UPF0014 PF03649.13 gi|294495843|ref|YP_003542336.1| - 3.2e-71 239.5 16.2 3.6e-71 239.3 16.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) ABC_tran PF00005.27 gi|294495844|ref|YP_003542337.1| - 8e-29 100.9 0.0 9.8e-29 100.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|294495844|ref|YP_003542337.1| - 3.3e-08 33.7 1.7 2e-05 24.5 0.3 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|294495844|ref|YP_003542337.1| - 0.00026 20.5 0.1 0.0011 18.4 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|294495844|ref|YP_003542337.1| - 0.00037 20.2 0.0 0.00072 19.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|294495844|ref|YP_003542337.1| - 0.0041 17.5 0.0 0.0059 17.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 gi|294495844|ref|YP_003542337.1| - 0.02 15.1 0.5 0.54 10.5 0.1 2.5 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit GvpD PF07088.11 gi|294495844|ref|YP_003542337.1| - 0.048 12.3 0.0 0.054 12.1 0.0 1.1 1 0 0 1 1 1 0 GvpD gas vesicle protein RsgA_GTPase PF03193.16 gi|294495844|ref|YP_003542337.1| - 0.05 13.5 0.0 0.078 12.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 gi|294495844|ref|YP_003542337.1| - 0.052 12.9 0.0 0.071 12.5 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|294495844|ref|YP_003542337.1| - 0.061 12.8 0.0 0.095 12.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|294495844|ref|YP_003542337.1| - 0.082 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_23 PF13476.6 gi|294495844|ref|YP_003542337.1| - 0.096 13.2 0.7 0.12 12.8 0.7 1.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|294495844|ref|YP_003542337.1| - 0.16 11.6 0.0 0.47 10.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|294495844|ref|YP_003542337.1| - 0.23 11.0 0.0 0.32 10.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain SfsA PF03749.13 gi|294495845|ref|YP_003542338.1| - 6e-39 133.1 0.0 7.8e-39 132.7 0.0 1.2 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|294495845|ref|YP_003542338.1| - 9.1e-22 77.0 0.1 1.8e-21 76.1 0.1 1.5 1 0 0 1 1 1 1 SfsA N-terminal OB domain DUF5518 PF17647.1 gi|294495846|ref|YP_003542339.1| - 2.1e-09 37.5 30.1 2.5e-09 37.3 30.1 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) DUF3792 PF12670.7 gi|294495846|ref|YP_003542339.1| - 0.2 11.9 29.4 2 8.6 20.8 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3792) DUF373 PF04123.13 gi|294495846|ref|YP_003542339.1| - 7.1 6.0 8.0 16 4.8 8.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF373) Metallophos PF00149.28 gi|294495847|ref|YP_003542340.1| - 1.6e-25 90.8 0.0 2.5e-25 90.2 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|294495847|ref|YP_003542340.1| - 6.1e-07 29.8 0.0 1.2e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Ribo_biogen_C PF04034.13 gi|294495848|ref|YP_003542341.1| - 5.4e-48 161.9 0.0 6.7e-48 161.6 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|294495848|ref|YP_003542341.1| - 3.6e-13 49.1 1.3 5.6e-13 48.5 1.3 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI RNA_Me_trans PF04252.13 gi|294495848|ref|YP_003542341.1| - 0.0066 16.0 0.0 0.0095 15.5 0.0 1.2 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase DTW PF03942.15 gi|294495848|ref|YP_003542341.1| - 0.046 13.4 0.0 0.1 12.3 0.0 1.4 1 1 0 1 1 1 0 DTW domain LDcluster4 PF18306.1 gi|294495849|ref|YP_003542342.1| - 2.5e-48 163.6 3.3 2.8e-48 163.4 3.3 1.0 1 0 0 1 1 1 1 SLOG cluster4 family DNA_processg_A PF02481.15 gi|294495849|ref|YP_003542342.1| - 1.8e-08 33.9 0.9 9.7e-07 28.2 0.2 2.0 1 1 1 2 2 2 2 DNA recombination-mediator protein A Lysine_decarbox PF03641.14 gi|294495849|ref|YP_003542342.1| - 1.9e-06 28.0 0.1 2.6e-06 27.5 0.1 1.2 1 0 0 1 1 1 1 Possible lysine decarboxylase DAGK_cat PF00781.24 gi|294495849|ref|YP_003542342.1| - 0.0056 16.3 1.8 0.89 9.2 0.0 2.6 1 1 1 2 2 2 2 Diacylglycerol kinase catalytic domain GGDEF_2 PF17853.1 gi|294495849|ref|YP_003542342.1| - 0.023 14.9 0.0 0.038 14.3 0.0 1.4 1 1 0 1 1 1 0 GGDEF-like domain Aminoglyc_resit PF10706.9 gi|294495849|ref|YP_003542342.1| - 0.059 13.1 0.0 0.093 12.5 0.0 1.3 1 0 0 1 1 1 0 Aminoglycoside-2''-adenylyltransferase LSDAT_prok PF18171.1 gi|294495849|ref|YP_003542342.1| - 0.08 12.2 0.1 0.26 10.5 0.0 1.7 1 1 0 2 2 2 0 SLOG in TRPM, prokaryote TPALS PF18178.1 gi|294495849|ref|YP_003542342.1| - 0.1 12.0 0.9 0.3 10.5 0.0 2.1 2 1 1 3 3 3 0 TIR- and PNP-associating SLOG family Topoisom_bac PF01131.20 gi|294495850|ref|YP_003542343.1| - 9.4e-128 426.7 0.0 1.4e-127 426.1 0.0 1.3 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|294495850|ref|YP_003542343.1| - 5.7e-17 61.8 1.4 1.2e-16 60.8 0.4 2.1 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|294495850|ref|YP_003542343.1| - 2.4e-13 49.6 2.9 2.4e-13 49.6 2.9 2.0 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.6 gi|294495850|ref|YP_003542343.1| - 2.8e-06 27.8 0.2 2e-05 25.1 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain IMS_HHH PF11798.8 gi|294495850|ref|YP_003542343.1| - 6.8e-05 23.0 0.0 0.00019 21.6 0.0 1.8 1 0 0 1 1 1 1 IMS family HHH motif Cdd1 PF11731.8 gi|294495850|ref|YP_003542343.1| - 0.00081 19.6 0.0 0.0025 18.0 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus TfoX_C PF04994.13 gi|294495850|ref|YP_003542343.1| - 0.007 16.4 0.0 0.017 15.2 0.0 1.6 1 0 0 1 1 1 1 TfoX C-terminal domain DUF2283 PF10049.9 gi|294495850|ref|YP_003542343.1| - 0.015 15.5 0.1 0.43 10.8 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2283) DUF4332 PF14229.6 gi|294495850|ref|YP_003542343.1| - 0.016 15.4 0.0 0.031 14.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) Tex_N PF09371.10 gi|294495850|ref|YP_003542343.1| - 0.048 13.3 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Tex-like protein N-terminal domain DNA_pol_lambd_f PF10391.9 gi|294495850|ref|YP_003542343.1| - 0.15 12.0 0.0 0.4 10.5 0.0 1.8 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Beta-Casp PF10996.8 gi|294495851|ref|YP_003542344.1| - 2.1e-11 44.1 0.0 5.7e-11 42.7 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|294495851|ref|YP_003542344.1| - 9.3e-10 38.3 0.0 1.7e-08 34.3 0.0 2.3 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|294495851|ref|YP_003542344.1| - 2e-05 24.7 0.6 0.00019 21.5 0.6 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|294495851|ref|YP_003542344.1| - 0.00025 20.6 0.4 0.0015 18.1 0.3 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|294495851|ref|YP_003542344.1| - 0.0021 18.0 0.0 0.0073 16.2 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain CEP63 PF17045.5 gi|294495851|ref|YP_003542344.1| - 0.081 12.8 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Centrosomal protein of 63 kDa NTP_transf_3 PF12804.7 gi|294495852|ref|YP_003542345.1| - 3.3e-31 108.8 0.0 4.2e-31 108.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|294495852|ref|YP_003542345.1| - 0.0031 17.3 0.0 0.0046 16.7 0.0 1.1 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SBP56 PF05694.11 gi|294495852|ref|YP_003542345.1| - 0.027 13.3 0.0 0.036 12.9 0.0 1.1 1 0 0 1 1 1 0 56kDa selenium binding protein (SBP56) DUF1262 PF06880.11 gi|294495852|ref|YP_003542345.1| - 0.11 12.9 0.0 0.17 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1262) DUF2148 PF09918.9 gi|294495853|ref|YP_003542346.1| - 7.9e-35 118.7 0.5 7.9e-35 118.7 0.5 1.8 2 0 0 2 2 2 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.13 gi|294495853|ref|YP_003542346.1| - 0.00095 18.8 1.0 0.002 17.8 1.0 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster Nitroreductase PF00881.24 gi|294495853|ref|YP_003542346.1| - 0.03 14.4 0.0 0.039 14.0 0.0 1.2 1 0 0 1 1 1 0 Nitroreductase family DUF460 PF04312.13 gi|294495854|ref|YP_003542347.1| - 9.4e-49 164.7 0.1 2.9e-48 163.2 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|294495854|ref|YP_003542347.1| - 0.005 17.1 0.1 0.013 15.8 0.1 1.7 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor TubC_N PF18563.1 gi|294495854|ref|YP_003542347.1| - 0.023 14.6 0.0 2.3 8.3 0.0 3.0 2 0 0 2 2 2 0 TubC N-terminal docking domain Acylphosphatase PF00708.18 gi|294495854|ref|YP_003542347.1| - 0.12 12.8 4.0 5.5 7.5 0.0 3.8 3 1 0 3 3 3 0 Acylphosphatase HAUS-augmin3 PF14932.6 gi|294495854|ref|YP_003542347.1| - 0.13 11.8 7.8 0.25 10.9 7.8 1.4 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 TMF_TATA_bd PF12325.8 gi|294495854|ref|YP_003542347.1| - 0.21 11.8 15.7 1.2 9.3 14.1 2.7 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding UPF0242 PF06785.11 gi|294495854|ref|YP_003542347.1| - 0.38 10.8 18.3 0.037 14.1 6.6 2.4 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Snapin_Pallidin PF14712.6 gi|294495854|ref|YP_003542347.1| - 0.53 10.7 14.8 0.6 10.6 12.9 2.1 1 1 0 1 1 1 0 Snapin/Pallidin DUF4164 PF13747.6 gi|294495854|ref|YP_003542347.1| - 0.72 10.2 11.2 1.2 9.5 8.6 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) DUF1664 PF07889.12 gi|294495854|ref|YP_003542347.1| - 0.84 9.7 11.0 0.27 11.3 3.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) ADIP PF11559.8 gi|294495854|ref|YP_003542347.1| - 1.5 8.9 19.8 1.3 9.1 13.2 2.7 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Spc7 PF08317.11 gi|294495854|ref|YP_003542347.1| - 5 5.9 18.6 4.1 6.2 15.4 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein FlgM PF04316.13 gi|294495854|ref|YP_003542347.1| - 9.3 6.7 7.6 8.9 6.8 2.9 2.9 2 1 0 2 2 2 0 Anti-sigma-28 factor, FlgM RIO1 PF01163.22 gi|294495855|ref|YP_003542348.1| - 1.7e-42 145.2 0.1 2.2e-42 144.8 0.1 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|294495855|ref|YP_003542348.1| - 1.5e-27 95.6 0.0 2.7e-27 94.8 0.0 1.4 1 0 0 1 1 1 1 Rio2, N-terminal Pkinase PF00069.25 gi|294495855|ref|YP_003542348.1| - 0.0013 18.2 0.0 0.0025 17.2 0.0 1.5 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|294495855|ref|YP_003542348.1| - 0.0024 17.8 0.2 0.0071 16.3 0.1 1.7 2 0 0 2 2 2 1 Phosphotransferase enzyme family HTH_27 PF13463.6 gi|294495855|ref|YP_003542348.1| - 0.0042 17.5 0.0 0.0079 16.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|294495855|ref|YP_003542348.1| - 0.053 13.4 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 MarR family Kdo PF06293.14 gi|294495855|ref|YP_003542348.1| - 0.057 12.8 0.3 6 6.2 0.1 2.2 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family B-block_TFIIIC PF04182.12 gi|294495855|ref|YP_003542348.1| - 0.089 13.0 0.0 0.2 11.8 0.0 1.6 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF2111 PF09884.9 gi|294495856|ref|YP_003542349.1| - 1.4e-33 114.8 1.6 1.9e-33 114.4 1.6 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) Pyr_redox_2 PF07992.14 gi|294495857|ref|YP_003542350.1| - 9.7e-48 162.9 0.2 1.1e-47 162.7 0.2 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|294495857|ref|YP_003542350.1| - 3.2e-27 95.6 0.8 2.6e-21 76.2 0.1 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|294495857|ref|YP_003542350.1| - 9.2e-17 61.4 2.8 6.7e-14 52.2 0.1 3.1 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|294495857|ref|YP_003542350.1| - 1.5e-09 37.1 0.9 0.00037 19.3 0.0 3.1 3 0 0 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.7 gi|294495857|ref|YP_003542350.1| - 1.3e-08 34.7 0.4 1.3e-07 31.3 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|294495857|ref|YP_003542350.1| - 6.1e-07 28.9 2.3 5.8e-05 22.3 0.2 3.4 3 1 1 4 4 4 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|294495857|ref|YP_003542350.1| - 1.7e-05 24.1 1.9 0.00041 19.5 0.2 3.2 4 0 0 4 4 4 1 FAD binding domain FAD_binding_3 PF01494.19 gi|294495857|ref|YP_003542350.1| - 4e-05 23.0 0.1 0.00016 21.0 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|294495857|ref|YP_003542350.1| - 9.5e-05 22.6 0.4 0.00036 20.7 0.1 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 gi|294495857|ref|YP_003542350.1| - 0.00073 18.8 0.2 0.046 12.9 0.0 2.4 2 1 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.24 gi|294495857|ref|YP_003542350.1| - 0.0014 18.3 2.2 0.012 15.3 0.3 2.5 2 1 0 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|294495857|ref|YP_003542350.1| - 0.0018 17.6 0.5 0.051 12.8 0.1 2.5 2 0 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.6 gi|294495857|ref|YP_003542350.1| - 0.0069 16.8 0.2 0.22 12.0 0.1 2.4 2 1 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|294495857|ref|YP_003542350.1| - 0.0099 15.0 2.3 1.3 8.0 0.3 2.9 2 1 0 3 3 3 2 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|294495857|ref|YP_003542350.1| - 0.04 13.2 0.3 0.61 9.4 0.1 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|294495857|ref|YP_003542350.1| - 0.078 11.8 0.8 2.9 6.6 0.1 2.9 3 0 0 3 3 3 0 Tryptophan halogenase Thioredoxin_3 PF13192.6 gi|294495858|ref|YP_003542351.1| - 1.6e-15 56.9 0.1 1.9e-15 56.7 0.1 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|294495858|ref|YP_003542351.1| - 4.2e-07 30.1 0.0 5.5e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin PF00085.20 gi|294495858|ref|YP_003542351.1| - 8.7e-07 28.9 0.1 8.7e-07 28.9 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|294495858|ref|YP_003542351.1| - 0.00042 20.6 0.1 0.055 13.8 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like DUF836 PF05768.14 gi|294495858|ref|YP_003542351.1| - 0.00044 20.6 0.0 0.00044 20.6 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) TraF PF13728.6 gi|294495858|ref|YP_003542351.1| - 0.0029 17.5 0.0 0.0037 17.1 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.6 gi|294495858|ref|YP_003542351.1| - 0.0083 16.6 0.0 0.011 16.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.20 gi|294495858|ref|YP_003542351.1| - 0.02 14.7 0.0 0.021 14.6 0.0 1.1 1 0 0 1 1 1 0 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|294495858|ref|YP_003542351.1| - 0.026 14.7 0.2 0.035 14.3 0.2 1.3 1 1 0 1 1 1 0 Thioredoxin IGPS PF00218.21 gi|294495859|ref|YP_003542352.1| - 1.1e-59 201.7 0.1 1.4e-59 201.3 0.1 1.1 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase DHO_dh PF01180.21 gi|294495859|ref|YP_003542352.1| - 0.00091 18.5 0.6 0.002 17.4 0.1 1.9 2 1 0 2 2 2 1 Dihydroorotate dehydrogenase PALP PF00291.25 gi|294495860|ref|YP_003542353.1| - 5.2e-39 134.4 1.0 6.4e-39 134.1 1.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.20 gi|294495861|ref|YP_003542354.1| - 3.8e-93 311.1 0.1 4.5e-93 310.8 0.1 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|294495861|ref|YP_003542354.1| - 0.00013 21.5 0.2 0.00028 20.4 0.2 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|294495861|ref|YP_003542354.1| - 0.0017 17.9 2.8 0.05 13.1 0.4 2.8 2 1 1 3 3 3 1 PcrB family IMPDH PF00478.25 gi|294495861|ref|YP_003542354.1| - 0.0082 15.2 0.6 0.27 10.2 0.3 2.2 2 1 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain PucR PF07905.11 gi|294495861|ref|YP_003542354.1| - 0.0095 16.2 0.1 0.096 13.0 0.0 2.5 3 0 0 3 3 3 1 Purine catabolism regulatory protein-like family IGPS PF00218.21 gi|294495861|ref|YP_003542354.1| - 0.013 14.7 0.1 0.026 13.7 0.1 1.5 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase DHO_dh PF01180.21 gi|294495861|ref|YP_003542354.1| - 0.026 13.8 0.2 0.039 13.2 0.2 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase SRP54 PF00448.22 gi|294495862|ref|YP_003542355.1| - 1.1e-72 243.9 0.3 1.6e-72 243.3 0.3 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|294495862|ref|YP_003542355.1| - 9.5e-12 45.0 2.3 3.6e-11 43.1 2.3 2.0 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|294495862|ref|YP_003542355.1| - 2.9e-05 23.9 0.3 4.9e-05 23.1 0.3 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|294495862|ref|YP_003542355.1| - 0.00033 21.1 0.1 0.00076 19.9 0.1 1.7 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|294495862|ref|YP_003542355.1| - 0.00037 19.8 0.1 0.00059 19.2 0.1 1.4 1 1 0 1 1 1 1 Zeta toxin Thymidylate_kin PF02223.17 gi|294495862|ref|YP_003542355.1| - 0.00061 19.5 0.1 0.02 14.6 0.0 2.6 3 0 0 3 3 3 1 Thymidylate kinase AAA_28 PF13521.6 gi|294495862|ref|YP_003542355.1| - 0.00076 19.8 0.2 0.0037 17.5 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|294495862|ref|YP_003542355.1| - 0.0011 19.4 0.1 0.0051 17.2 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|294495862|ref|YP_003542355.1| - 0.0018 18.6 0.0 0.0059 16.9 0.0 1.8 2 1 0 2 2 1 1 AAA domain ABC_tran PF00005.27 gi|294495862|ref|YP_003542355.1| - 0.0032 18.0 0.1 0.018 15.6 0.0 2.1 2 0 0 2 2 2 1 ABC transporter cobW PF02492.19 gi|294495862|ref|YP_003542355.1| - 0.0058 16.2 0.3 0.01 15.5 0.3 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|294495862|ref|YP_003542355.1| - 0.0081 16.6 0.1 0.022 15.1 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain APS_kinase PF01583.20 gi|294495862|ref|YP_003542355.1| - 0.0089 15.9 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase T2SSE PF00437.20 gi|294495862|ref|YP_003542355.1| - 0.011 14.9 0.2 0.036 13.1 0.1 1.8 1 1 1 2 2 2 0 Type II/IV secretion system protein DUF2075 PF09848.9 gi|294495862|ref|YP_003542355.1| - 0.043 13.0 0.2 0.075 12.3 0.2 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.15 gi|294495862|ref|YP_003542355.1| - 0.05 13.5 1.1 0.52 10.2 0.2 2.5 2 1 0 3 3 3 0 NTPase MMR_HSR1 PF01926.23 gi|294495862|ref|YP_003542355.1| - 0.056 13.5 0.5 0.26 11.4 0.5 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|294495862|ref|YP_003542355.1| - 0.063 13.4 0.1 0.13 12.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|294495862|ref|YP_003542355.1| - 0.065 12.7 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_18 PF13238.6 gi|294495862|ref|YP_003542355.1| - 0.12 12.9 0.5 5.5 7.6 0.1 2.4 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|294495862|ref|YP_003542355.1| - 0.26 11.2 2.0 0.22 11.5 0.2 2.0 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Prefoldin PF02996.17 gi|294495863|ref|YP_003542356.1| - 6.6e-29 100.3 5.6 6.6e-29 100.3 5.6 1.4 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|294495863|ref|YP_003542356.1| - 1.9e-09 37.4 14.2 9.8e-06 25.5 4.8 2.1 2 0 0 2 2 2 2 Prefoldin subunit KxDL PF10241.9 gi|294495863|ref|YP_003542356.1| - 0.0008 19.6 1.6 0.0008 19.6 1.6 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein FapA PF03961.13 gi|294495863|ref|YP_003542356.1| - 0.0059 15.3 3.7 0.0059 15.3 3.7 2.0 1 1 1 2 2 2 1 Flagellar Assembly Protein A Atg14 PF10186.9 gi|294495863|ref|YP_003542356.1| - 0.0075 15.4 5.6 0.0093 15.1 5.6 1.1 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 TBK1_CCD1 PF18394.1 gi|294495863|ref|YP_003542356.1| - 0.0076 15.8 7.3 0.029 14.0 1.7 2.0 1 1 0 2 2 2 1 TANK-binding kinase 1 coiled-coil domain 1 RrnaAD PF00398.20 gi|294495863|ref|YP_003542356.1| - 0.0098 15.0 1.2 0.01 15.0 0.1 1.6 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase DUF1043 PF06295.12 gi|294495863|ref|YP_003542356.1| - 0.019 15.0 0.6 0.019 15.0 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1043) GCN5L1 PF06320.13 gi|294495863|ref|YP_003542356.1| - 0.026 14.7 9.9 0.39 10.9 0.4 2.2 2 0 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) Med9 PF07544.13 gi|294495863|ref|YP_003542356.1| - 0.032 14.3 9.6 0.44 10.7 0.6 2.4 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 RPW8 PF05659.11 gi|294495863|ref|YP_003542356.1| - 0.053 13.2 2.2 0.093 12.4 0.3 1.9 2 0 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 PspB PF06667.12 gi|294495863|ref|YP_003542356.1| - 0.063 13.3 9.6 0.063 13.3 2.0 2.4 2 1 0 2 2 2 0 Phage shock protein B DUF3450 PF11932.8 gi|294495863|ref|YP_003542356.1| - 0.065 12.5 15.6 0.46 9.8 2.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4298 PF14131.6 gi|294495863|ref|YP_003542356.1| - 0.071 13.1 4.2 7.6 6.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4298) Laminin_II PF06009.12 gi|294495863|ref|YP_003542356.1| - 0.072 13.1 11.2 0.5 10.4 3.4 2.2 2 0 0 2 2 2 0 Laminin Domain II Plk4_PB2 PF18409.1 gi|294495863|ref|YP_003542356.1| - 0.092 13.4 6.4 0.13 13.0 1.0 2.0 1 1 1 2 2 2 0 Polo-like Kinase 4 Polo Box 2 DUF4795 PF16043.5 gi|294495863|ref|YP_003542356.1| - 0.12 12.0 9.3 0.78 9.3 1.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) Seryl_tRNA_N PF02403.22 gi|294495863|ref|YP_003542356.1| - 0.12 12.6 9.6 2.4 8.5 0.5 2.3 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain CdvA PF18822.1 gi|294495863|ref|YP_003542356.1| - 0.14 12.0 6.9 0.42 10.4 2.3 2.2 2 0 0 2 2 2 0 CdvA-like coiled-coil domain DHR10 PF18595.1 gi|294495863|ref|YP_003542356.1| - 0.15 12.2 14.4 0.74 9.9 1.8 2.3 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain DUF1664 PF07889.12 gi|294495863|ref|YP_003542356.1| - 0.15 12.1 9.6 0.5 10.4 2.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) CENP-F_leu_zip PF10473.9 gi|294495863|ref|YP_003542356.1| - 0.2 11.7 13.3 1.3 9.1 4.6 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Fib_alpha PF08702.10 gi|294495863|ref|YP_003542356.1| - 0.2 11.8 12.9 0.12 12.5 4.2 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF5320 PF17253.2 gi|294495863|ref|YP_003542356.1| - 0.2 12.7 3.4 2.5 9.2 0.1 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5320) Fmp27_WPPW PF10359.9 gi|294495863|ref|YP_003542356.1| - 0.21 10.4 7.6 1.3 7.8 3.1 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain Rho_Binding PF08912.11 gi|294495863|ref|YP_003542356.1| - 0.21 12.4 12.1 0.64 10.9 4.4 2.3 2 0 0 2 2 2 0 Rho Binding DUF812 PF05667.11 gi|294495863|ref|YP_003542356.1| - 0.26 10.1 12.6 0.18 10.7 3.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF812) HAUS-augmin3 PF14932.6 gi|294495863|ref|YP_003542356.1| - 0.26 10.8 12.9 0.4 10.2 2.4 2.1 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 Spc24 PF08286.11 gi|294495863|ref|YP_003542356.1| - 0.31 11.3 12.4 1 9.7 2.9 2.3 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 Allexi_40kDa PF05549.11 gi|294495863|ref|YP_003542356.1| - 0.31 10.5 5.4 0.5 9.8 1.7 2.0 2 0 0 2 2 2 0 Allexivirus 40kDa protein Vps5 PF09325.10 gi|294495863|ref|YP_003542356.1| - 0.32 10.5 8.8 2 7.9 0.4 2.0 2 0 0 2 2 2 0 Vps5 C terminal like DUF948 PF06103.11 gi|294495863|ref|YP_003542356.1| - 0.39 11.0 8.0 0.94 9.8 2.6 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Fzo_mitofusin PF04799.13 gi|294495863|ref|YP_003542356.1| - 0.44 10.1 9.6 1.3 8.6 1.5 2.1 2 0 0 2 2 2 0 fzo-like conserved region XhlA PF10779.9 gi|294495863|ref|YP_003542356.1| - 0.59 10.4 7.6 0.87 9.8 3.1 2.3 2 0 0 2 2 2 0 Haemolysin XhlA zf-C4H2 PF10146.9 gi|294495863|ref|YP_003542356.1| - 0.66 10.3 8.7 0.22 11.8 2.5 2.0 2 0 0 2 2 2 0 Zinc finger-containing protein Synaptobrevin PF00957.21 gi|294495863|ref|YP_003542356.1| - 0.68 9.8 11.7 1 9.2 5.9 2.2 2 0 0 2 2 2 0 Synaptobrevin NPV_P10 PF05531.12 gi|294495863|ref|YP_003542356.1| - 0.78 10.2 10.5 0.7 10.4 2.9 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Sec34 PF04136.15 gi|294495863|ref|YP_003542356.1| - 0.79 9.6 11.6 1.9 8.4 2.8 2.1 2 0 0 2 2 2 0 Sec34-like family COG2 PF06148.11 gi|294495863|ref|YP_003542356.1| - 0.82 9.8 7.2 1.2 9.3 1.6 2.1 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 AKNA PF12443.8 gi|294495863|ref|YP_003542356.1| - 1.1 9.9 13.1 1.2 9.9 0.9 2.2 2 0 0 2 2 2 0 AT-hook-containing transcription factor Muted PF14942.6 gi|294495863|ref|YP_003542356.1| - 1.1 9.5 13.1 0.16 12.3 5.1 2.1 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein LMBR1 PF04791.16 gi|294495863|ref|YP_003542356.1| - 1.2 8.0 4.5 1.4 7.7 4.5 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein UPF0242 PF06785.11 gi|294495863|ref|YP_003542356.1| - 1.4 9.0 14.9 0.21 11.7 4.4 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus HisKA PF00512.25 gi|294495863|ref|YP_003542356.1| - 1.4 9.0 5.1 2.7 8.1 0.9 2.2 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Spc7 PF08317.11 gi|294495863|ref|YP_003542356.1| - 1.5 7.6 14.5 2.4 6.9 5.7 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein L31 PF09784.9 gi|294495863|ref|YP_003542356.1| - 1.6 9.2 5.2 14 6.1 1.7 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L31 DUF3782 PF12644.7 gi|294495863|ref|YP_003542356.1| - 1.7 8.9 4.3 4.2 7.6 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3782) APG6_N PF17675.1 gi|294495863|ref|YP_003542356.1| - 1.9 9.0 14.7 23 5.5 13.1 2.1 1 1 0 1 1 1 0 Apg6 coiled-coil region DUF3552 PF12072.8 gi|294495863|ref|YP_003542356.1| - 2.7 7.4 15.0 0.46 9.9 6.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) YPEB PF14620.6 gi|294495863|ref|YP_003542356.1| - 4 6.7 14.6 2.5 7.4 5.4 2.0 1 1 1 2 2 2 0 YpeB sporulation Ribosomal_L18A PF01775.17 gi|294495864|ref|YP_003542357.1| - 2.5e-10 40.5 0.1 3e-10 40.2 0.1 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A eIF-6 PF01912.18 gi|294495865|ref|YP_003542358.1| - 5.4e-67 225.0 4.6 6.8e-67 224.7 4.6 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|294495866|ref|YP_003542359.1| - 1.2e-08 35.0 0.1 1.5e-08 34.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.20 gi|294495867|ref|YP_003542360.1| - 8.9e-19 66.9 9.7 1.2e-18 66.4 9.7 1.2 1 0 0 1 1 1 1 Ribosomal L39 protein Asn_synthase PF00733.21 gi|294495868|ref|YP_003542361.1| - 0.00087 19.1 0.1 0.0014 18.4 0.1 1.3 1 0 0 1 1 1 1 Asparagine synthase Diphthami_syn_2 PF01902.17 gi|294495868|ref|YP_003542361.1| - 0.067 12.7 0.1 0.2 11.1 0.1 2.0 1 1 0 1 1 1 0 Diphthamide synthase QueC PF06508.13 gi|294495868|ref|YP_003542361.1| - 0.09 12.3 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC dsDNA_bind PF01984.20 gi|294495869|ref|YP_003542362.1| - 1.9e-26 92.5 17.7 2.3e-26 92.2 17.7 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain cwf18 PF08315.12 gi|294495869|ref|YP_003542362.1| - 0.0078 16.9 11.7 0.0093 16.6 11.7 1.0 1 0 0 1 1 1 1 cwf18 pre-mRNA splicing factor DASH_Spc19 PF08287.11 gi|294495869|ref|YP_003542362.1| - 1.3 8.9 13.4 0.26 11.2 10.3 1.4 2 0 0 2 2 2 0 Spc19 Ribosomal_S19e PF01090.19 gi|294495870|ref|YP_003542363.1| - 7.9e-56 187.6 0.5 8.9e-56 187.4 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|294495870|ref|YP_003542363.1| - 0.031 14.2 0.0 3.5 7.6 0.0 2.3 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain XdhC_C PF13478.6 gi|294495870|ref|YP_003542363.1| - 0.055 14.0 0.1 0.069 13.7 0.1 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain RP1-2 PF12042.8 gi|294495870|ref|YP_003542363.1| - 0.14 12.1 0.1 0.18 11.7 0.1 1.1 1 0 0 1 1 1 0 Tubuliform egg casing silk strands structural domain Adenylsucc_synt PF00709.21 gi|294495871|ref|YP_003542364.1| - 3.1e-157 523.8 0.0 3.5e-157 523.6 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Ribosomal_S17e PF00833.18 gi|294495873|ref|YP_003542366.1| - 4.1e-10 39.6 1.2 4.2e-10 39.6 1.2 1.0 1 0 0 1 1 1 1 Ribosomal S17 DHDPS PF00701.22 gi|294495874|ref|YP_003542367.1| - 3.2e-93 311.6 0.6 3.6e-93 311.4 0.6 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DapB_C PF05173.14 gi|294495875|ref|YP_003542368.1| - 5.8e-47 158.7 0.2 8.2e-47 158.2 0.2 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|294495875|ref|YP_003542368.1| - 4.6e-31 107.5 1.3 7e-31 106.9 1.3 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.24 gi|294495875|ref|YP_003542368.1| - 0.0015 19.0 0.4 0.0027 18.1 0.3 1.5 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain MM_CoA_mutase PF01642.22 gi|294495875|ref|YP_003542368.1| - 0.0065 15.1 0.0 0.0087 14.7 0.0 1.1 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase PyrI PF01948.18 gi|294495876|ref|YP_003542369.1| - 4.4e-29 100.6 0.3 6.1e-29 100.1 0.3 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|294495876|ref|YP_003542369.1| - 5.8e-17 61.3 6.9 9.6e-17 60.6 6.9 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Mu-like_Com PF10122.9 gi|294495876|ref|YP_003542369.1| - 0.065 12.7 0.5 0.16 11.5 0.5 1.7 1 0 0 1 1 1 0 Mu-like prophage protein Com OTCace_N PF02729.21 gi|294495877|ref|YP_003542370.1| - 2.3e-46 157.5 0.0 6.6e-46 156.0 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|294495877|ref|YP_003542370.1| - 1.5e-33 116.1 0.0 2.4e-33 115.4 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RraA-like PF03737.15 gi|294495878|ref|YP_003542371.1| - 8.1e-43 146.2 0.5 8.1e-43 146.2 0.5 2.0 3 0 0 3 3 3 1 Aldolase/RraA OMPdecase PF00215.24 gi|294495878|ref|YP_003542371.1| - 4.5e-20 72.2 7.1 1.1e-19 70.9 7.1 1.7 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family HMGL-like PF00682.19 gi|294495878|ref|YP_003542371.1| - 1.8e-06 27.7 5.4 0.0017 17.9 0.4 3.0 1 1 1 3 3 3 2 HMGL-like NanE PF04131.14 gi|294495878|ref|YP_003542371.1| - 1.4e-05 24.4 3.2 1.4e-05 24.4 3.2 2.2 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase Aldolase PF01081.19 gi|294495878|ref|YP_003542371.1| - 5.6e-05 22.6 2.4 0.0017 17.8 0.3 2.3 2 0 0 2 2 2 2 KDPG and KHG aldolase IGPS PF00218.21 gi|294495878|ref|YP_003542371.1| - 0.00011 21.5 0.8 0.00016 21.0 0.8 1.3 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.20 gi|294495878|ref|YP_003542371.1| - 0.0038 16.1 2.4 0.18 10.7 0.3 3.1 2 1 1 3 3 3 1 Tryptophan synthase alpha chain PcrB PF01884.17 gi|294495878|ref|YP_003542371.1| - 0.01 15.3 5.9 0.042 13.3 0.8 3.3 2 1 0 3 3 3 0 PcrB family Ribul_P_3_epim PF00834.19 gi|294495878|ref|YP_003542371.1| - 0.26 10.7 3.9 2.1 7.7 3.3 2.4 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family Arc_PepC_II PF06847.11 gi|294495879|ref|YP_003542372.1| - 4.5e-31 107.2 1.6 5.5e-30 103.7 0.0 2.5 3 0 0 3 3 3 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|294495879|ref|YP_003542372.1| - 7.3e-12 45.6 8.7 7.3e-12 45.6 8.7 1.6 2 0 0 2 2 2 1 Type IV leader peptidase family RQC PF09382.10 gi|294495880|ref|YP_003542373.1| - 9.7e-30 102.7 0.0 2.2e-29 101.5 0.0 1.6 1 0 0 1 1 1 1 RQC domain HRDC PF00570.23 gi|294495880|ref|YP_003542373.1| - 5.1e-20 71.2 0.0 9.6e-20 70.4 0.0 1.4 1 0 0 1 1 1 1 HRDC domain Helicase_C PF00271.31 gi|294495880|ref|YP_003542373.1| - 5.7e-20 71.7 0.0 3.6e-17 62.7 0.0 2.6 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DEAD PF00270.29 gi|294495880|ref|YP_003542373.1| - 2.7e-18 66.3 0.0 7.6e-18 64.9 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase RecQ_Zn_bind PF16124.5 gi|294495880|ref|YP_003542373.1| - 3.9e-16 59.5 3.8 3.9e-16 59.5 3.8 2.4 3 0 0 3 3 3 1 RecQ zinc-binding Helicase_Sgs1 PF11408.8 gi|294495880|ref|YP_003542373.1| - 0.0037 17.3 0.0 0.0082 16.2 0.0 1.5 1 0 0 1 1 1 1 Sgs1 RecQ helicase ResIII PF04851.15 gi|294495880|ref|YP_003542373.1| - 0.025 14.6 0.0 0.12 12.4 0.0 2.1 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Glyco_trans_1_2 PF13524.6 gi|294495880|ref|YP_003542373.1| - 0.16 12.3 0.0 0.47 10.9 0.0 1.8 1 0 0 1 1 1 0 Glycosyl transferases group 1 GMP_synt_C PF00958.22 gi|294495881|ref|YP_003542374.1| - 4.9e-29 100.2 0.0 9.6e-29 99.3 0.0 1.5 1 1 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|294495881|ref|YP_003542374.1| - 2.9e-11 42.9 0.0 6.2e-06 25.5 0.0 2.1 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|294495881|ref|YP_003542374.1| - 4.7e-05 22.4 0.0 0.0051 15.7 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|294495881|ref|YP_003542374.1| - 0.0001 21.9 0.0 0.0011 18.5 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.19 gi|294495881|ref|YP_003542374.1| - 0.00018 20.9 0.2 0.00039 19.8 0.0 1.6 2 0 0 2 2 2 1 Arginosuccinate synthase ThiI PF02568.14 gi|294495881|ref|YP_003542374.1| - 0.064 12.8 0.1 0.16 11.6 0.1 1.8 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 gi|294495881|ref|YP_003542374.1| - 0.081 12.6 0.1 0.18 11.4 0.0 1.5 2 0 0 2 2 2 0 Asparagine synthase PAPS_reduct PF01507.19 gi|294495881|ref|YP_003542374.1| - 0.098 12.7 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|294495881|ref|YP_003542374.1| - 0.2 11.4 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 PP-loop family Radical_SAM PF04055.21 gi|294495882|ref|YP_003542375.1| - 0.00044 20.7 0.1 0.00081 19.8 0.1 1.6 1 1 0 1 1 1 1 Radical SAM superfamily AAA_17 PF13207.6 gi|294495882|ref|YP_003542375.1| - 0.027 14.9 0.1 0.061 13.8 0.1 1.7 1 0 0 1 1 1 0 AAA domain DUF1688 PF07958.11 gi|294495882|ref|YP_003542375.1| - 0.13 10.9 0.0 0.17 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1688) AA_kinase PF00696.28 gi|294495883|ref|YP_003542376.1| - 3.9e-45 154.3 3.3 4.4e-45 154.1 3.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family MC1 PF05854.11 gi|294495884|ref|YP_003542377.1| - 1.1e-38 131.4 1.6 1.2e-38 131.2 1.6 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 GCHY-1 PF02649.14 gi|294495885|ref|YP_003542378.1| - 3.2e-83 279.2 5.5 3.6e-83 279.1 5.5 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF2098 PF09871.9 gi|294495886|ref|YP_003542379.1| - 7.1e-24 84.0 1.5 8.1e-24 83.8 1.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) NTP_transf_2 PF01909.23 gi|294495887|ref|YP_003542380.1| - 7.4e-05 23.0 0.0 0.00017 21.8 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain Acetyltransf_1 PF00583.25 gi|294495888|ref|YP_003542381.1| - 1.4e-13 51.1 0.0 1.9e-13 50.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|294495888|ref|YP_003542381.1| - 3.5e-12 46.6 0.0 5.7e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|294495888|ref|YP_003542381.1| - 1.7e-07 31.2 0.0 2.3e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|294495888|ref|YP_003542381.1| - 0.00055 20.1 0.0 0.00077 19.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|294495888|ref|YP_003542381.1| - 0.001 19.1 0.0 0.018 15.2 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|294495888|ref|YP_003542381.1| - 0.0015 18.6 0.0 0.0066 16.5 0.0 1.9 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF1699 PF08004.11 gi|294495889|ref|YP_003542382.1| - 1.3e-30 105.8 0.2 1.4e-30 105.7 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) TrmO PF01980.16 gi|294495890|ref|YP_003542383.1| - 7e-32 110.1 0.0 8.4e-32 109.9 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O Fer4 PF00037.27 gi|294495891|ref|YP_003542384.1| - 2e-11 43.2 12.0 2.5e-08 33.4 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|294495891|ref|YP_003542384.1| - 2.5e-10 40.0 13.8 1.6e-06 27.9 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|294495891|ref|YP_003542384.1| - 8.4e-07 28.7 14.0 8.5e-06 25.6 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294495891|ref|YP_003542384.1| - 4.4e-06 27.2 15.3 8.9e-06 26.2 15.3 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495891|ref|YP_003542384.1| - 7.3e-06 26.8 13.8 0.0053 17.7 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|294495891|ref|YP_003542384.1| - 2.5e-05 24.4 16.6 5.1e-05 23.3 16.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294495891|ref|YP_003542384.1| - 3.3e-05 24.1 19.0 0.00069 19.9 4.2 2.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|294495891|ref|YP_003542384.1| - 0.00027 21.0 17.7 0.00098 19.2 17.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|294495891|ref|YP_003542384.1| - 0.003 17.6 15.7 0.0079 16.3 15.7 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|294495891|ref|YP_003542384.1| - 0.0066 17.2 0.8 0.0066 17.2 0.8 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|294495891|ref|YP_003542384.1| - 0.0097 16.4 11.0 0.019 15.5 2.9 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|294495891|ref|YP_003542384.1| - 0.016 15.8 5.3 0.016 15.8 5.3 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|294495891|ref|YP_003542384.1| - 0.018 15.5 16.0 0.05 14.1 6.0 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|294495891|ref|YP_003542384.1| - 0.11 13.5 19.8 0.37 11.8 7.2 2.5 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|294495891|ref|YP_003542384.1| - 0.15 13.0 14.4 0.74 10.7 4.0 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Radical_SAM PF04055.21 gi|294495892|ref|YP_003542385.1| - 3.6e-08 34.0 0.7 7.9e-08 32.9 0.1 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|294495892|ref|YP_003542385.1| - 5.7e-06 26.5 0.1 1.3e-05 25.3 0.1 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|294495892|ref|YP_003542385.1| - 8.5e-05 22.8 0.3 0.00023 21.4 0.1 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF2551 PF10826.8 gi|294495893|ref|YP_003542386.1| - 2e-31 108.0 0.7 2.4e-31 107.8 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) FUR PF01475.19 gi|294495893|ref|YP_003542386.1| - 0.031 14.4 0.0 0.04 14.0 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family Prenyltransf PF01255.19 gi|294495894|ref|YP_003542387.1| - 7.1e-71 238.3 0.0 8.6e-71 238.0 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase N6_N4_Mtase PF01555.18 gi|294495895|ref|YP_003542388.1| - 6.3e-32 111.1 0.9 6.3e-32 111.1 0.9 1.4 2 0 0 2 2 2 1 DNA methylase N6_Mtase PF02384.16 gi|294495895|ref|YP_003542388.1| - 5.9e-05 22.5 0.0 0.0073 15.6 0.0 2.2 2 0 0 2 2 2 2 N-6 DNA Methylase Methyltransf_11 PF08241.12 gi|294495895|ref|YP_003542388.1| - 0.0054 17.4 0.0 4 8.1 0.0 3.3 3 0 0 3 3 3 1 Methyltransferase domain UPF0020 PF01170.18 gi|294495895|ref|YP_003542388.1| - 0.0057 16.4 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|294495895|ref|YP_003542388.1| - 0.016 14.7 0.0 2.6 7.6 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase small domain Met_10 PF02475.16 gi|294495895|ref|YP_003542388.1| - 0.061 13.1 0.0 0.2 11.4 0.0 1.8 1 1 0 1 1 1 0 Met-10+ like-protein mRNA_cap_enzyme PF01331.19 gi|294495895|ref|YP_003542388.1| - 0.087 12.6 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 mRNA capping enzyme, catalytic domain RNA_pol_A_bac PF01000.26 gi|294495898|ref|YP_003542391.1| - 4.1e-26 91.6 0.1 2e-25 89.3 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|294495898|ref|YP_003542391.1| - 2.3e-16 59.0 0.0 3.2e-16 58.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_10 PF13237.6 gi|294495898|ref|YP_003542391.1| - 8.2e-07 29.1 8.7 8.2e-07 29.1 8.7 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495898|ref|YP_003542391.1| - 3.1e-05 24.8 10.7 0.023 15.6 0.7 3.2 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|294495898|ref|YP_003542391.1| - 0.0001 22.4 11.4 0.0001 22.4 11.4 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|294495898|ref|YP_003542391.1| - 0.00015 22.3 9.6 0.00015 22.3 9.6 2.8 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|294495898|ref|YP_003542391.1| - 0.00073 19.3 13.2 0.0027 17.5 3.5 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|294495898|ref|YP_003542391.1| - 0.012 15.7 3.6 0.012 15.7 3.6 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|294495898|ref|YP_003542391.1| - 0.017 15.6 14.9 0.52 10.8 0.6 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294495898|ref|YP_003542391.1| - 0.027 14.6 3.1 0.027 14.6 3.1 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|294495898|ref|YP_003542391.1| - 0.028 15.3 2.6 0.028 15.3 2.6 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294495898|ref|YP_003542391.1| - 0.033 14.7 13.7 0.18 12.3 1.0 3.1 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294495898|ref|YP_003542391.1| - 0.046 14.2 22.5 0.11 13.1 1.3 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|294495898|ref|YP_003542391.1| - 2 8.6 11.1 7.2 6.8 11.1 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|294495898|ref|YP_003542391.1| - 6.4 7.0 20.9 0.36 11.0 13.1 2.7 2 1 2 4 4 4 0 4Fe-4S dicluster domain Ribosomal_S11 PF00411.19 gi|294495899|ref|YP_003542392.1| - 1.6e-45 154.0 3.1 2.3e-45 153.5 3.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.10 gi|294495899|ref|YP_003542392.1| - 0.00092 19.0 0.2 0.0012 18.6 0.2 1.2 1 0 0 1 1 1 1 Pilus biogenesis CpaD protein (pilus_cpaD) CBM_25 PF03423.13 gi|294495899|ref|YP_003542392.1| - 0.047 14.0 0.1 0.13 12.6 0.0 1.7 2 0 0 2 2 2 0 Carbohydrate binding domain (family 25) S4 PF01479.25 gi|294495900|ref|YP_003542393.1| - 3.2e-14 52.4 0.0 7e-14 51.3 0.0 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S13 PF00416.22 gi|294495901|ref|YP_003542394.1| - 3.9e-42 143.7 1.6 4.5e-42 143.5 1.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_8 PF14716.6 gi|294495901|ref|YP_003542394.1| - 0.035 14.5 0.2 0.28 11.6 0.0 2.3 3 0 0 3 3 3 0 Helix-hairpin-helix domain FbpA PF05833.11 gi|294495901|ref|YP_003542394.1| - 0.043 12.6 0.0 0.044 12.5 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) HHH_6 PF14579.6 gi|294495901|ref|YP_003542394.1| - 0.052 13.8 0.0 0.089 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix motif Nup54_C PF18437.1 gi|294495901|ref|YP_003542394.1| - 0.17 11.8 3.5 11 6.0 0.0 2.5 2 0 0 2 2 2 0 Nup54 C-terminal interacting domain DJ-1_PfpI PF01965.24 gi|294495903|ref|YP_003542396.1| - 1.2e-40 139.0 0.1 1.4e-40 138.8 0.1 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family Catalase_C PF18011.1 gi|294495903|ref|YP_003542396.1| - 7.7e-06 25.6 0.1 9.9e-06 25.3 0.1 1.2 1 0 0 1 1 1 1 C-terminal domain found in long catalases ThiJ_like PF17124.5 gi|294495903|ref|YP_003542396.1| - 0.0013 18.5 0.1 0.23 11.1 0.0 2.1 1 1 1 2 2 2 2 ThiJ/PfpI family-like FKBP26_C PF18046.1 gi|294495904|ref|YP_003542397.1| - 8.7e-12 45.0 0.4 1.6e-11 44.1 0.4 1.4 1 0 0 1 1 1 1 FKBP26_C-terminal FKBP_C PF00254.28 gi|294495904|ref|YP_003542397.1| - 2.1e-10 40.8 0.5 1.8e-09 37.8 0.3 2.3 1 1 1 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase HATPase_c PF02518.26 gi|294495905|ref|YP_003542398.1| - 2.6e-31 108.4 0.1 6.9e-31 107.1 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|294495905|ref|YP_003542398.1| - 1.4e-16 60.5 0.0 4.3e-16 59.0 0.0 1.8 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|294495905|ref|YP_003542398.1| - 2.9e-13 49.7 0.9 5e-13 48.9 0.1 1.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 gi|294495905|ref|YP_003542398.1| - 4.5e-08 33.5 0.0 7.4e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 gi|294495905|ref|YP_003542398.1| - 0.00022 21.5 0.0 0.00084 19.7 0.0 1.9 1 1 0 1 1 1 1 GAF domain HATPase_c_3 PF13589.6 gi|294495905|ref|YP_003542398.1| - 0.00027 20.8 0.0 0.00049 19.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|294495905|ref|YP_003542398.1| - 0.0026 17.8 0.0 0.0053 16.7 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|294495905|ref|YP_003542398.1| - 0.0033 17.7 0.1 0.011 15.9 0.1 2.0 1 1 1 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 gi|294495905|ref|YP_003542398.1| - 0.01 15.7 0.1 0.036 14.0 0.1 1.9 1 0 0 1 1 1 0 GHKL domain DUF4847 PF16139.5 gi|294495905|ref|YP_003542398.1| - 0.02 14.8 0.9 0.02 14.8 0.9 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4847) DUF3369 PF11849.8 gi|294495905|ref|YP_003542398.1| - 0.077 13.2 0.0 0.23 11.7 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3369) Rep_N PF08724.10 gi|294495905|ref|YP_003542398.1| - 0.15 11.8 0.0 4.6 7.0 0.0 2.7 2 1 1 3 3 3 0 Rep protein catalytic domain like PAS_9 PF13426.7 gi|294495906|ref|YP_003542399.1| - 5.8e-24 84.3 2.7 6e-09 36.1 0.1 3.9 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|294495906|ref|YP_003542399.1| - 1.7e-22 80.1 0.1 1.2e-21 77.3 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|294495906|ref|YP_003542399.1| - 5.6e-21 74.9 0.0 5.8e-07 29.7 0.0 3.6 3 1 0 3 3 3 3 PAS fold PAS PF00989.25 gi|294495906|ref|YP_003542399.1| - 1.4e-19 70.2 0.0 6.5e-07 29.3 0.0 3.9 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|294495906|ref|YP_003542399.1| - 1.2e-13 51.1 0.0 3.8e-07 30.3 0.0 3.7 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|294495906|ref|YP_003542399.1| - 3e-09 36.7 0.0 1.4e-05 25.0 0.0 2.7 2 0 0 2 2 2 2 PAS domain HisKA PF00512.25 gi|294495906|ref|YP_003542399.1| - 2.5e-06 27.4 0.1 7.6e-06 25.9 0.1 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|294495906|ref|YP_003542399.1| - 0.00036 20.4 0.1 0.0036 17.2 0.0 2.7 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.6 gi|294495906|ref|YP_003542399.1| - 0.00068 19.6 0.0 0.0014 18.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF_3 PF13492.6 gi|294495906|ref|YP_003542399.1| - 0.00092 19.6 0.0 0.0025 18.2 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|294495906|ref|YP_003542399.1| - 0.0014 18.8 0.0 0.19 11.9 0.0 3.5 2 1 0 2 2 2 1 PAS fold GAF PF01590.26 gi|294495906|ref|YP_003542399.1| - 0.0019 18.9 0.0 0.0034 18.0 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_10 PF13596.6 gi|294495906|ref|YP_003542399.1| - 0.027 15.1 0.2 12 6.5 0.0 4.1 4 0 0 4 4 4 0 PAS domain IF4E PF01652.18 gi|294495906|ref|YP_003542399.1| - 0.036 13.9 0.0 0.088 12.6 0.0 1.6 1 0 0 1 1 1 0 Eukaryotic initiation factor 4E HcyBio PF01837.16 gi|294495907|ref|YP_003542400.1| - 1.2e-140 468.3 0.3 1.6e-140 467.9 0.3 1.2 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation CBS PF00571.28 gi|294495907|ref|YP_003542400.1| - 2.8e-23 82.1 8.5 3.9e-14 52.8 0.1 3.4 3 0 0 3 3 3 2 CBS domain IF3_N PF05198.16 gi|294495907|ref|YP_003542400.1| - 9.5 6.6 6.5 51 4.2 0.9 3.6 3 1 0 3 3 3 0 Translation initiation factor IF-3, N-terminal domain Fer4 PF00037.27 gi|294495908|ref|YP_003542401.1| - 1e-14 53.6 12.2 2.5e-07 30.2 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294495908|ref|YP_003542401.1| - 2.7e-13 50.3 33.2 7.3e-09 36.1 11.5 1.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294495908|ref|YP_003542401.1| - 5.3e-11 41.9 11.7 2.9e-05 23.9 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|294495908|ref|YP_003542401.1| - 7.2e-11 42.1 21.5 7.5e-08 32.4 12.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495908|ref|YP_003542401.1| - 2.2e-09 38.1 9.2 0.00024 22.0 0.4 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|294495908|ref|YP_003542401.1| - 9.3e-09 35.0 15.1 0.00037 20.4 4.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294495908|ref|YP_003542401.1| - 2.1e-08 34.6 4.0 0.0023 18.4 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294495908|ref|YP_003542401.1| - 2.6e-08 33.8 27.2 9.7e-07 28.8 14.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|294495908|ref|YP_003542401.1| - 2.8e-08 33.8 8.6 0.0003 20.8 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294495908|ref|YP_003542401.1| - 1.5e-06 28.2 12.2 0.0017 18.7 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|294495908|ref|YP_003542401.1| - 2.9e-06 27.7 13.5 0.0014 19.2 1.8 2.5 3 0 0 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|294495908|ref|YP_003542401.1| - 4e-06 27.2 12.4 0.0051 17.2 1.6 2.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|294495908|ref|YP_003542401.1| - 2.8e-05 24.3 12.1 0.0003 21.0 12.3 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|294495908|ref|YP_003542401.1| - 0.00021 22.0 18.8 0.072 14.1 6.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|294495908|ref|YP_003542401.1| - 0.0013 19.6 10.3 0.05 14.5 0.7 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain NIL PF09383.10 gi|294495908|ref|YP_003542401.1| - 0.0014 18.4 0.1 0.0018 18.1 0.1 1.2 1 0 0 1 1 1 1 NIL domain Fer4_15 PF13459.6 gi|294495908|ref|YP_003542401.1| - 0.46 11.3 15.5 0.34 11.7 2.8 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain ApbE PF02424.15 gi|294495909|ref|YP_003542402.1| - 0.011 15.3 0.3 0.011 15.3 0.3 2.1 1 1 1 2 2 2 0 ApbE family Tubulin PF00091.25 gi|294495911|ref|YP_003542404.1| - 5.7e-37 127.8 0.2 1.1e-36 126.9 0.2 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|294495911|ref|YP_003542404.1| - 2.7e-34 117.3 1.0 5.6e-34 116.3 0.1 2.0 2 0 0 2 2 2 1 FtsZ family, C-terminal domain DUF4346 PF14251.6 gi|294495912|ref|YP_003542405.1| - 1.9e-09 37.5 0.1 1e-07 32.0 0.1 3.1 2 1 1 3 3 3 1 Domain of unknown function (DUF4346) Pterin_bind PF00809.22 gi|294495912|ref|YP_003542405.1| - 6.4e-07 29.3 1.0 3.2e-06 27.0 1.0 2.1 1 1 0 1 1 1 1 Pterin binding enzyme CdhD PF03599.16 gi|294495912|ref|YP_003542405.1| - 8.4e-07 28.0 0.4 2e-06 26.8 0.1 1.7 2 0 0 2 2 2 1 CO dehydrogenase/acetyl-CoA synthase delta subunit Sterile PF03015.19 gi|294495913|ref|YP_003542406.1| - 0.032 14.5 2.6 0.46 10.7 0.1 2.5 1 1 1 2 2 2 0 Male sterility protein DUF4434 PF14488.6 gi|294495913|ref|YP_003542406.1| - 0.16 11.9 3.9 0.19 11.7 3.9 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4434) FAD_binding_3 PF01494.19 gi|294495914|ref|YP_003542407.1| - 6.7e-12 45.3 6.0 6.1e-10 38.9 1.2 2.9 2 1 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|294495914|ref|YP_003542407.1| - 2.8e-10 40.3 3.2 2.6e-05 24.0 1.5 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|294495914|ref|YP_003542407.1| - 5.1e-09 36.0 0.1 8.4e-09 35.3 0.1 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|294495914|ref|YP_003542407.1| - 9e-09 35.0 0.3 7.3e-07 28.7 0.1 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|294495914|ref|YP_003542407.1| - 1.1e-07 31.3 0.2 0.005 16.0 0.0 2.3 2 1 0 2 2 2 2 Lycopene cyclase protein GIDA PF01134.22 gi|294495914|ref|YP_003542407.1| - 1.3e-07 31.1 0.2 3.3e-07 29.7 0.2 1.7 1 1 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|294495914|ref|YP_003542407.1| - 5.1e-07 28.7 0.5 8.9e-07 27.9 0.5 1.4 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|294495914|ref|YP_003542407.1| - 1.5e-06 28.3 0.2 1.4e-05 25.2 0.2 2.5 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|294495914|ref|YP_003542407.1| - 2.9e-06 26.6 0.5 5.3e-06 25.8 0.5 1.4 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|294495914|ref|YP_003542407.1| - 5.7e-05 22.5 0.1 0.00018 20.8 0.1 1.8 1 0 0 1 1 1 1 Thi4 family Trp_halogenase PF04820.14 gi|294495914|ref|YP_003542407.1| - 0.00011 21.2 0.2 0.071 11.9 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.27 gi|294495914|ref|YP_003542407.1| - 0.0004 20.9 0.7 0.065 13.8 0.1 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|294495914|ref|YP_003542407.1| - 0.0064 15.8 0.5 0.014 14.7 0.5 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|294495914|ref|YP_003542407.1| - 0.017 15.0 0.6 0.039 13.8 0.6 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF2274 PF10038.9 gi|294495914|ref|YP_003542407.1| - 0.049 14.1 0.0 0.12 12.8 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2274) Pyr_redox_3 PF13738.6 gi|294495914|ref|YP_003542407.1| - 0.064 12.5 0.3 0.17 11.1 0.3 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GGACT PF06094.12 gi|294495915|ref|YP_003542408.1| - 4e-21 75.8 0.0 4.4e-21 75.7 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like Radical_SAM PF04055.21 gi|294495916|ref|YP_003542409.1| - 1.3e-15 58.2 0.0 1.6e-15 57.9 0.0 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|294495916|ref|YP_003542409.1| - 2.3e-07 31.0 0.0 3.9e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain MMR_HSR1 PF01926.23 gi|294495917|ref|YP_003542410.1| - 2.6e-16 59.7 0.1 3.8e-16 59.2 0.1 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|294495917|ref|YP_003542410.1| - 1.7e-11 43.9 0.8 2.1e-10 40.4 0.8 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|294495917|ref|YP_003542410.1| - 3.5e-06 27.0 0.6 0.02 14.8 0.1 2.6 3 0 0 3 3 3 2 RsgA GTPase Dynamin_N PF00350.23 gi|294495917|ref|YP_003542410.1| - 0.00061 19.9 0.7 0.0016 18.6 0.7 1.6 1 1 0 1 1 1 1 Dynamin family GTP_EFTU PF00009.27 gi|294495917|ref|YP_003542410.1| - 0.0018 17.8 0.1 0.0079 15.7 0.0 1.9 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_18 PF13238.6 gi|294495917|ref|YP_003542410.1| - 0.066 13.8 0.1 0.15 12.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|294495917|ref|YP_003542410.1| - 0.091 11.7 2.6 2.3 7.1 0.0 2.2 2 1 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Roc PF08477.13 gi|294495917|ref|YP_003542410.1| - 0.12 12.6 0.5 0.28 11.4 0.2 1.8 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase PIN_6 PF17146.4 gi|294495917|ref|YP_003542410.1| - 0.12 12.8 0.0 0.75 10.3 0.0 2.0 2 0 0 2 2 2 0 PIN domain of ribonuclease DHHA1 PF02272.19 gi|294495918|ref|YP_003542411.1| - 2.4e-15 57.2 0.0 4.7e-15 56.2 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|294495918|ref|YP_003542411.1| - 0.00037 20.7 0.2 0.00063 19.9 0.2 1.3 1 0 0 1 1 1 1 DHH family TRAP_beta PF05753.14 gi|294495920|ref|YP_003542413.1| - 1.4e-09 37.6 4.3 0.0042 16.5 0.0 3.4 2 1 0 3 3 3 3 Translocon-associated protein beta (TRAPB) BatD PF13584.6 gi|294495920|ref|YP_003542413.1| - 1.1e-08 34.4 8.1 1.7e-05 23.8 6.4 2.6 1 1 1 2 2 2 2 Oxygen tolerance CARDB PF07705.11 gi|294495920|ref|YP_003542413.1| - 1.4e-08 34.9 9.8 0.0043 17.3 0.1 4.0 3 1 1 4 4 4 3 CARDB DUF11 PF01345.18 gi|294495920|ref|YP_003542413.1| - 2.4e-07 31.0 6.0 0.00071 19.8 0.8 3.9 4 0 0 4 4 4 2 Domain of unknown function DUF11 fn3_3 PF14686.6 gi|294495920|ref|YP_003542413.1| - 0.00022 20.9 0.1 0.00078 19.2 0.1 1.9 1 0 0 1 1 1 1 Polysaccharide lyase family 4, domain II bMG10 PF17973.1 gi|294495920|ref|YP_003542413.1| - 0.0004 20.6 0.4 0.66 10.2 0.0 4.0 4 1 0 4 4 4 1 Bacterial Alpha-2-macroglobulin MG10 domain Av_adeno_fibre PF06536.11 gi|294495920|ref|YP_003542413.1| - 0.02 14.8 0.0 0.048 13.5 0.0 1.6 1 0 0 1 1 1 0 Avian adenovirus fibre, N-terminal NPCBM_assoc PF10633.9 gi|294495920|ref|YP_003542413.1| - 0.043 14.1 0.2 0.39 11.0 0.1 2.7 2 0 0 2 2 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase UPF0182 PF03699.13 gi|294495921|ref|YP_003542414.1| - 9.2e-284 943.3 15.8 1.1e-283 943.1 15.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0182) FmdE PF02663.14 gi|294495922|ref|YP_003542415.1| - 9.6e-26 90.4 0.0 1.4e-25 89.8 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon TackOD1 PF18551.1 gi|294495922|ref|YP_003542415.1| - 0.019 14.7 1.6 0.029 14.0 1.6 1.3 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 DUF2318 PF10080.9 gi|294495922|ref|YP_003542415.1| - 0.031 14.4 1.3 0.051 13.7 1.3 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) HypA PF01155.19 gi|294495922|ref|YP_003542415.1| - 0.054 13.5 0.5 0.12 12.4 0.5 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|294495922|ref|YP_003542415.1| - 0.14 12.2 3.2 0.22 11.5 3.2 1.3 1 0 0 1 1 1 0 zinc-ribbons ADK_lid PF05191.14 gi|294495922|ref|YP_003542415.1| - 0.18 11.8 0.3 0.18 11.8 0.3 2.5 1 1 1 2 2 2 0 Adenylate kinase, active site lid DZR PF12773.7 gi|294495922|ref|YP_003542415.1| - 0.2 11.7 2.2 0.32 11.0 2.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon HNH_5 PF14279.6 gi|294495922|ref|YP_003542415.1| - 1.5 8.8 7.1 6.7 6.7 1.4 2.3 1 1 1 2 2 2 0 HNH endonuclease Fer4 PF00037.27 gi|294495923|ref|YP_003542416.1| - 5.4e-54 178.0 93.5 1.2e-07 31.3 4.9 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294495923|ref|YP_003542416.1| - 1.7e-50 169.4 170.4 2.1e-10 41.0 8.8 5.8 1 1 8 9 9 9 9 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294495923|ref|YP_003542416.1| - 1.8e-35 121.7 62.2 5e-11 43.4 6.8 7.2 6 1 1 7 7 7 7 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|294495923|ref|YP_003542416.1| - 3.5e-34 115.5 90.6 1.7e-06 27.8 2.5 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_21 PF14697.6 gi|294495923|ref|YP_003542416.1| - 1.1e-30 105.6 76.5 3.1e-08 33.6 14.9 6.7 5 2 1 6 6 6 6 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294495923|ref|YP_003542416.1| - 2e-30 104.7 68.1 3.8e-11 43.0 5.9 5.4 2 1 5 7 7 7 7 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294495923|ref|YP_003542416.1| - 2e-29 101.5 75.9 1e-06 28.8 10.4 7.8 4 3 4 8 8 8 8 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294495923|ref|YP_003542416.1| - 2.7e-26 90.0 85.5 5.9e-06 26.1 2.7 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294495923|ref|YP_003542416.1| - 1.7e-18 66.9 64.6 2.1e-07 31.3 10.5 6.4 4 1 2 6 6 6 6 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294495923|ref|YP_003542416.1| - 2.5e-18 65.0 83.7 0.00019 21.7 1.8 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_8 PF13183.6 gi|294495923|ref|YP_003542416.1| - 2.8e-17 62.9 72.3 1.8e-08 34.7 4.3 6.5 3 1 4 7 7 7 6 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|294495923|ref|YP_003542416.1| - 1.7e-12 47.3 114.4 0.024 15.6 5.5 8.3 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_13 PF13370.6 gi|294495923|ref|YP_003542416.1| - 7.7e-08 32.8 80.4 0.071 13.7 2.6 8.0 7 1 0 7 7 7 6 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|294495923|ref|YP_003542416.1| - 2.1e-07 31.1 76.5 0.13 12.5 1.1 8.0 3 2 4 7 7 7 6 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|294495923|ref|YP_003542416.1| - 4.2e-07 30.7 72.5 0.16 12.8 1.0 8.1 4 2 3 7 7 7 5 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|294495923|ref|YP_003542416.1| - 0.94 10.3 78.0 0.27 12.0 1.3 9.1 5 2 2 7 7 6 0 4Fe-4S single cluster domain HCV_NS2 PF01538.18 gi|294495923|ref|YP_003542416.1| - 1 9.0 6.0 1.5 8.5 0.4 2.5 2 1 0 2 2 2 0 Hepatitis C virus non-structural protein NS2 Amidohydro_3 PF07969.11 gi|294495924|ref|YP_003542417.1| - 4.5e-91 306.7 0.0 5.2e-91 306.5 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|294495924|ref|YP_003542417.1| - 1.2e-08 34.7 0.2 0.00022 20.7 0.0 2.6 2 1 0 2 2 2 2 Amidohydrolase family DUF719 PF05334.13 gi|294495924|ref|YP_003542417.1| - 0.054 13.7 0.1 15 5.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF719) GXGXG PF01493.19 gi|294495925|ref|YP_003542418.1| - 7e-10 38.8 21.8 3.3e-08 33.3 21.8 2.7 1 1 0 1 1 1 1 GXGXG motif NAGLU_N PF12971.7 gi|294495925|ref|YP_003542418.1| - 0.64 9.8 5.1 11 5.9 0.4 3.7 2 2 1 3 3 3 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain Molydop_binding PF01568.21 gi|294495926|ref|YP_003542419.1| - 8.7e-10 38.6 0.0 1e-09 38.4 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.22 gi|294495927|ref|YP_003542420.1| - 1.1e-18 67.5 0.0 2.6e-18 66.2 0.0 1.6 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.22 gi|294495927|ref|YP_003542420.1| - 0.16 11.7 0.0 0.68 9.7 0.0 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain FdhD-NarQ PF02634.15 gi|294495928|ref|YP_003542421.1| - 6.1e-58 196.3 0.0 7.1e-58 196.1 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family DUF364 PF04016.12 gi|294495929|ref|YP_003542422.1| - 6.2e-40 136.2 0.0 1e-39 135.4 0.0 1.3 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|294495929|ref|YP_003542422.1| - 4.7e-12 46.0 0.0 9.1e-12 45.0 0.0 1.4 1 0 0 1 1 1 1 Putative heavy-metal chelation QRPTase_C PF01729.19 gi|294495930|ref|YP_003542423.1| - 4.1e-26 91.8 0.0 6.9e-26 91.0 0.0 1.4 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|294495930|ref|YP_003542423.1| - 2.3e-13 50.0 0.0 4.4e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain B12-binding PF02310.19 gi|294495930|ref|YP_003542423.1| - 0.025 14.6 0.1 4.1 7.4 0.0 2.6 2 1 0 2 2 2 0 B12 binding domain NIF3 PF01784.18 gi|294495931|ref|YP_003542424.1| - 4.2e-56 190.3 0.5 5.1e-56 190.0 0.5 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) DUF1959 PF09218.10 gi|294495931|ref|YP_003542424.1| - 0.025 14.7 0.4 0.23 11.6 0.1 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF1959) Trm56 PF01994.16 gi|294495933|ref|YP_003542426.1| - 1.5e-50 170.1 0.0 1.8e-50 169.8 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Luteo_PO PF04662.13 gi|294495933|ref|YP_003542426.1| - 0.24 11.1 0.0 0.37 10.4 0.0 1.3 1 0 0 1 1 1 0 Luteovirus P0 protein Glycos_trans_3N PF02885.17 gi|294495934|ref|YP_003542427.1| - 1.6e-14 53.5 0.5 3.7e-14 52.3 0.2 1.8 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.21 gi|294495934|ref|YP_003542427.1| - 1.1e-11 44.8 1.9 1.1e-10 41.5 1.9 2.2 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain Molydop_binding PF01568.21 gi|294495934|ref|YP_003542427.1| - 1.3e-05 25.1 0.1 4.4e-05 23.5 0.1 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain PYNP_C PF07831.13 gi|294495934|ref|YP_003542427.1| - 0.00022 20.8 0.0 0.00069 19.2 0.0 1.9 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain CDC48_N PF02359.18 gi|294495934|ref|YP_003542427.1| - 0.00097 19.3 0.1 0.0022 18.1 0.1 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Peptidase_C26 PF07722.13 gi|294495934|ref|YP_003542427.1| - 0.14 11.9 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 Fumerase_C PF05683.12 gi|294495935|ref|YP_003542428.1| - 1.9e-40 138.4 0.0 2.1e-40 138.3 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.14 gi|294495936|ref|YP_003542429.1| - 2.8e-94 315.5 0.4 3.2e-94 315.3 0.4 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) SBF PF01758.16 gi|294495937|ref|YP_003542430.1| - 9.8e-49 165.7 22.0 9.8e-49 165.7 22.0 3.0 3 1 1 4 4 4 1 Sodium Bile acid symporter family Usp PF00582.26 gi|294495938|ref|YP_003542431.1| - 1.7e-36 125.8 0.0 9.7e-18 65.0 0.0 2.1 2 0 0 2 2 2 2 Universal stress protein family RQC PF09382.10 gi|294495938|ref|YP_003542431.1| - 0.003 17.3 0.1 0.078 12.8 0.0 2.8 3 0 0 3 3 3 1 RQC domain DNA_photolyase PF00875.18 gi|294495938|ref|YP_003542431.1| - 0.0043 17.1 0.0 0.091 12.8 0.0 2.2 2 0 0 2 2 2 1 DNA photolyase Fasciclin PF02469.22 gi|294495938|ref|YP_003542431.1| - 0.034 14.4 0.7 3.8 7.8 0.6 2.5 2 1 0 2 2 2 0 Fasciclin domain AGOG PF09171.10 gi|294495938|ref|YP_003542431.1| - 0.037 13.4 2.8 0.058 12.7 1.9 1.9 2 1 0 2 2 2 0 N-glycosylase/DNA lyase DUF2812 PF11193.8 gi|294495938|ref|YP_003542431.1| - 0.037 14.2 0.1 0.69 10.1 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2812) TetR_C_19 PF17924.1 gi|294495938|ref|YP_003542431.1| - 0.3 11.7 5.0 0.52 10.9 2.3 2.4 2 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Ribul_P_3_epim PF00834.19 gi|294495938|ref|YP_003542431.1| - 0.32 10.4 4.1 3.5 7.0 0.4 2.6 2 2 0 2 2 2 0 Ribulose-phosphate 3 epimerase family DGC PF08859.11 gi|294495940|ref|YP_003542433.1| - 2.4e-34 117.6 1.0 3e-34 117.3 1.0 1.1 1 0 0 1 1 1 1 DGC domain MtrA PF04208.14 gi|294495941|ref|YP_003542434.1| - 3.2e-42 144.1 1.1 1.9e-32 112.3 0.3 2.1 2 0 0 2 2 2 2 Tetrahydromethanopterin S-methyltransferase, subunit A Phage_int_SAM_3 PF14659.6 gi|294495941|ref|YP_003542434.1| - 0.0056 16.9 6.7 0.48 10.7 0.2 2.9 3 1 0 3 3 3 2 Phage integrase, N-terminal SAM-like domain FeS PF04060.13 gi|294495942|ref|YP_003542435.1| - 7.1e-11 41.6 0.5 1.3e-10 40.8 0.5 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster HTH_20 PF12840.7 gi|294495942|ref|YP_003542435.1| - 2.1e-05 24.5 0.0 7e-05 22.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|294495942|ref|YP_003542435.1| - 9.5e-05 22.2 0.0 0.00022 21.0 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|294495942|ref|YP_003542435.1| - 0.0052 16.7 0.1 0.015 15.3 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix TBP PF00352.21 gi|294495942|ref|YP_003542435.1| - 0.0054 16.6 0.0 0.014 15.3 0.0 1.8 2 0 0 2 2 2 1 Transcription factor TFIID (or TATA-binding protein, TBP) ArsR PF09824.9 gi|294495942|ref|YP_003542435.1| - 0.012 15.3 1.7 0.1 12.2 0.0 2.1 2 0 0 2 2 2 0 ArsR transcriptional regulator DUF2513 PF10711.9 gi|294495942|ref|YP_003542435.1| - 0.083 13.2 0.2 0.22 11.8 0.0 1.8 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) ArsP_1 PF03773.13 gi|294495943|ref|YP_003542436.1| - 3.5e-12 46.1 9.4 5.4e-12 45.5 9.4 1.2 1 0 0 1 1 1 1 Predicted permease TssN PF17555.2 gi|294495943|ref|YP_003542436.1| - 0.17 11.3 9.7 2 7.7 1.3 2.1 1 1 1 2 2 2 0 Type VI secretion system, TssN ArsP_1 PF03773.13 gi|294495944|ref|YP_003542437.1| - 1.1e-07 31.3 17.5 1.3e-07 31.1 17.5 1.1 1 0 0 1 1 1 1 Predicted permease Zn_peptidase_2 PF04298.12 gi|294495944|ref|YP_003542437.1| - 0.58 9.5 7.1 6.6 6.1 6.8 2.1 1 1 0 1 1 1 0 Putative neutral zinc metallopeptidase E1-E2_ATPase PF00122.20 gi|294495944|ref|YP_003542437.1| - 5 6.6 9.3 1.3 8.5 0.3 2.2 2 0 0 2 2 2 0 E1-E2 ATPase Cupin_2 PF07883.11 gi|294495945|ref|YP_003542438.1| - 0.048 13.4 0.0 0.071 12.8 0.0 1.2 1 0 0 1 1 1 0 Cupin domain PadR PF03551.14 gi|294495946|ref|YP_003542439.1| - 8.6e-22 76.9 0.1 1.1e-21 76.5 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_32 PF13565.6 gi|294495946|ref|YP_003542439.1| - 0.037 14.6 0.1 0.099 13.3 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_34 PF13601.6 gi|294495946|ref|YP_003542439.1| - 0.09 13.0 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.22 gi|294495946|ref|YP_003542439.1| - 0.12 12.3 0.2 0.24 11.4 0.2 1.7 1 1 0 1 1 1 0 MarR family Cytochrom_c3_2 PF14537.6 gi|294495947|ref|YP_003542440.1| - 7.1e-11 42.4 24.5 0.0002 21.8 6.5 5.4 5 0 0 5 5 5 2 Cytochrome c3 Cytochrome_C7 PF14522.6 gi|294495947|ref|YP_003542440.1| - 5.5e-10 39.1 29.7 0.00047 20.1 5.6 5.5 3 2 1 4 4 4 4 Cytochrome c7 and related cytochrome c Paired_CXXCH_1 PF09699.10 gi|294495947|ref|YP_003542440.1| - 4.1e-09 36.0 30.5 0.00097 18.8 3.1 6.6 6 1 0 6 6 6 2 Doubled CXXCH motif (Paired_CXXCH_1) CarboxypepD_reg PF13620.6 gi|294495947|ref|YP_003542440.1| - 6.8e-09 35.9 2.7 1.5e-08 34.8 2.7 1.6 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|294495947|ref|YP_003542440.1| - 7.9e-08 32.2 0.2 1.5e-07 31.3 0.2 1.4 1 0 0 1 1 1 1 CarboxypepD_reg-like domain DUF4330 PF14221.6 gi|294495947|ref|YP_003542440.1| - 1.2e-05 25.6 1.0 2.2e-05 24.7 1.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4330) Cytochrome_C554 PF13435.6 gi|294495947|ref|YP_003542440.1| - 3.4e-05 24.7 27.7 0.053 14.4 3.3 6.3 6 1 0 6 6 6 3 Cytochrome c554 and c-prime Cytochrome_CBB3 PF13442.6 gi|294495947|ref|YP_003542440.1| - 0.0012 19.1 35.5 0.26 11.6 0.1 8.1 6 2 2 8 8 8 2 Cytochrome C oxidase, cbb3-type, subunit III SdrD_B PF17210.3 gi|294495947|ref|YP_003542440.1| - 0.016 15.4 3.2 1.5 9.1 0.7 2.9 2 1 0 2 2 2 0 SdrD B-like domain DUF2012 PF09430.10 gi|294495947|ref|YP_003542440.1| - 0.16 12.1 0.0 0.36 10.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2012) DUF2500 PF10694.9 gi|294495947|ref|YP_003542440.1| - 0.21 12.1 0.0 0.43 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2500) Cytochrom_CIII PF02085.16 gi|294495947|ref|YP_003542440.1| - 0.31 11.4 31.0 44 4.5 8.0 6.3 4 2 1 5 5 5 0 Class III cytochrome C family Cytochrom_NNT PF03264.14 gi|294495947|ref|YP_003542440.1| - 2.3 7.9 27.3 6.2 6.5 0.6 6.2 4 2 3 7 7 7 0 NapC/NirT cytochrome c family, N-terminal region HTH_5 PF01022.20 gi|294495948|ref|YP_003542441.1| - 3e-19 68.6 0.9 6.8e-19 67.5 0.9 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|294495948|ref|YP_003542441.1| - 2.2e-11 43.6 0.0 5.3e-11 42.4 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|294495948|ref|YP_003542441.1| - 0.002 18.0 0.0 0.0033 17.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|294495948|ref|YP_003542441.1| - 0.0024 17.4 0.2 0.0074 15.8 0.2 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|294495948|ref|YP_003542441.1| - 0.0041 17.0 0.0 0.0062 16.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|294495948|ref|YP_003542441.1| - 0.011 15.5 0.0 0.017 14.9 0.0 1.2 1 0 0 1 1 1 0 Homeodomain-like domain HTH_IclR PF09339.10 gi|294495948|ref|YP_003542441.1| - 0.037 13.8 0.0 0.079 12.8 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain CSN5_C PF18323.1 gi|294495948|ref|YP_003542441.1| - 0.097 13.6 0.1 0.13 13.2 0.1 1.3 1 1 0 1 1 1 0 Cop9 signalosome subunit 5 C-terminal domain DUF169 PF02596.15 gi|294495949|ref|YP_003542442.1| - 1.2e-53 182.2 0.0 1.4e-53 181.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Clathrin-link PF09268.10 gi|294495949|ref|YP_003542442.1| - 0.093 12.1 0.0 0.24 10.8 0.0 1.7 1 0 0 1 1 1 0 Clathrin, heavy-chain linker GTF2I PF02946.14 gi|294495949|ref|YP_003542442.1| - 0.11 12.5 0.0 15 5.8 0.0 2.6 2 0 0 2 2 2 0 GTF2I-like repeat Methyltransf_31 PF13847.6 gi|294495951|ref|YP_003542444.1| - 1.7e-35 122.1 0.8 2.5e-35 121.5 0.2 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|294495951|ref|YP_003542444.1| - 3.1e-24 85.5 0.0 6.8e-24 84.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|294495951|ref|YP_003542444.1| - 1.4e-22 80.1 0.0 2.9e-22 79.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|294495951|ref|YP_003542444.1| - 8.4e-18 64.5 1.7 1.7e-17 63.5 0.3 1.9 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|294495951|ref|YP_003542444.1| - 3.9e-13 50.0 0.0 8.5e-13 48.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|294495951|ref|YP_003542444.1| - 9.4e-12 45.1 0.1 1.9e-11 44.2 0.1 1.5 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HTH_5 PF01022.20 gi|294495951|ref|YP_003542444.1| - 3e-11 43.0 0.0 6.1e-11 42.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Methyltransf_23 PF13489.6 gi|294495951|ref|YP_003542444.1| - 3.5e-11 43.2 0.0 5.4e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|294495951|ref|YP_003542444.1| - 1e-08 35.1 0.1 2.2e-08 34.1 0.1 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|294495951|ref|YP_003542444.1| - 1.8e-08 34.1 0.0 3.8e-08 33.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase small domain HTH_20 PF12840.7 gi|294495951|ref|YP_003542444.1| - 8.4e-08 32.2 0.0 1.6e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain PrmA PF06325.13 gi|294495951|ref|YP_003542444.1| - 8.6e-08 31.9 0.2 1.4e-07 31.2 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|294495951|ref|YP_003542444.1| - 3.4e-07 30.4 0.2 6.6e-06 26.2 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|294495951|ref|YP_003542444.1| - 1.5e-05 25.0 0.2 4.9e-05 23.3 0.2 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.20 gi|294495951|ref|YP_003542444.1| - 4.3e-05 23.0 0.0 6.9e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.10 gi|294495951|ref|YP_003542444.1| - 8.3e-05 22.2 0.0 0.00017 21.2 0.0 1.6 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase FtsJ PF01728.19 gi|294495951|ref|YP_003542444.1| - 0.00011 22.4 0.2 0.00064 19.9 0.0 2.0 2 0 0 2 2 2 1 FtsJ-like methyltransferase Methyltransf_18 PF12847.7 gi|294495951|ref|YP_003542444.1| - 0.00011 22.1 0.1 0.00027 20.9 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|294495951|ref|YP_003542444.1| - 0.00097 18.9 0.0 0.0015 18.3 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit HTH_24 PF13412.6 gi|294495951|ref|YP_003542444.1| - 0.002 17.6 0.1 0.022 14.3 0.1 2.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding GidB PF02527.15 gi|294495951|ref|YP_003542444.1| - 0.0058 16.0 0.0 0.0095 15.3 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_4 PF02390.17 gi|294495951|ref|YP_003542444.1| - 0.0059 16.1 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase RepL PF05732.11 gi|294495951|ref|YP_003542444.1| - 0.019 14.4 0.0 0.037 13.5 0.0 1.4 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_36 PF13730.6 gi|294495951|ref|YP_003542444.1| - 0.028 14.4 0.0 0.076 13.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|294495951|ref|YP_003542444.1| - 0.052 13.9 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor ADH_zinc_N PF00107.26 gi|294495951|ref|YP_003542444.1| - 0.061 13.3 0.1 0.25 11.3 0.0 2.1 2 0 0 2 2 1 0 Zinc-binding dehydrogenase AhpC-TSA PF00578.21 gi|294495952|ref|YP_003542445.1| - 2.9e-27 95.0 0.0 4.3e-27 94.5 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.9 gi|294495952|ref|YP_003542445.1| - 1.5e-14 53.5 0.4 3e-14 52.6 0.4 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.10 gi|294495952|ref|YP_003542445.1| - 1.8e-09 37.4 0.0 3e-09 36.7 0.0 1.5 1 1 0 1 1 1 1 Redoxin Cytochrom_C PF00034.21 gi|294495953|ref|YP_003542446.1| - 2.8e-09 38.0 0.0 4.6e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 gi|294495953|ref|YP_003542446.1| - 6.7e-07 29.5 0.0 1.2e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III SHOCT PF09851.9 gi|294495954|ref|YP_003542447.1| - 1.9e-09 36.9 1.7 3e-09 36.3 1.7 1.3 1 0 0 1 1 1 1 Short C-terminal domain FAM209 PF15206.6 gi|294495954|ref|YP_003542447.1| - 0.068 13.0 0.0 0.072 12.9 0.0 1.1 1 0 0 1 1 1 0 FAM209 family Methyltransf_25 PF13649.6 gi|294495955|ref|YP_003542448.1| - 5e-15 56.0 0.0 8e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|294495955|ref|YP_003542448.1| - 3.9e-14 52.5 0.0 4.4e-14 52.4 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|294495955|ref|YP_003542448.1| - 5.1e-14 52.3 0.0 6.6e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|294495955|ref|YP_003542448.1| - 2.7e-11 44.0 0.0 4.2e-11 43.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|294495955|ref|YP_003542448.1| - 2.8e-11 43.6 0.0 3.9e-11 43.1 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|294495955|ref|YP_003542448.1| - 1.2e-08 35.6 0.0 2e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|294495955|ref|YP_003542448.1| - 8e-06 25.8 0.0 9.7e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|294495955|ref|YP_003542448.1| - 0.00021 20.8 0.0 0.00029 20.4 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase FtsJ PF01728.19 gi|294495955|ref|YP_003542448.1| - 0.00028 21.1 0.0 0.00036 20.7 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase MTS PF05175.14 gi|294495955|ref|YP_003542448.1| - 0.00041 19.9 0.0 0.00057 19.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|294495955|ref|YP_003542448.1| - 0.00043 20.3 0.0 0.00054 20.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|294495955|ref|YP_003542448.1| - 0.00079 18.8 0.0 0.0012 18.2 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Phage_integrase PF00589.22 gi|294495955|ref|YP_003542448.1| - 0.0014 18.5 0.0 0.0015 18.3 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family Methyltransf_18 PF12847.7 gi|294495955|ref|YP_003542448.1| - 0.0023 17.9 0.0 0.0036 17.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|294495955|ref|YP_003542448.1| - 0.0026 17.2 0.0 0.003 17.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) GCD14 PF08704.10 gi|294495955|ref|YP_003542448.1| - 0.003 17.3 0.0 0.0037 17.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.20 gi|294495955|ref|YP_003542448.1| - 0.0068 15.5 0.0 0.0088 15.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.17 gi|294495955|ref|YP_003542448.1| - 0.012 14.8 0.0 0.014 14.6 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase RIO1 PF01163.22 gi|294495955|ref|YP_003542448.1| - 0.02 14.5 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 RIO1 family TehB PF03848.14 gi|294495955|ref|YP_003542448.1| - 0.022 14.2 0.0 0.026 13.9 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_16 PF10294.9 gi|294495955|ref|YP_003542448.1| - 0.05 13.3 0.0 0.066 12.9 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Methyltr_RsmB-F PF01189.17 gi|294495955|ref|YP_003542448.1| - 0.057 13.0 0.0 0.074 12.7 0.0 1.1 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_33 PF10017.9 gi|294495955|ref|YP_003542448.1| - 0.067 12.3 0.0 0.084 12.0 0.0 1.1 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent tRNA_U5-meth_tr PF05958.11 gi|294495955|ref|YP_003542448.1| - 0.086 11.8 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Cytochrome_C7 PF14522.6 gi|294495956|ref|YP_003542449.1| - 2.5e-12 46.6 22.8 0.00054 19.9 5.5 5.3 2 1 3 5 5 5 4 Cytochrome c7 and related cytochrome c Cytochrome_C554 PF13435.6 gi|294495956|ref|YP_003542449.1| - 5.1e-11 43.3 22.3 6.5e-05 23.8 0.3 5.9 5 2 0 5 5 5 4 Cytochrome c554 and c-prime Cytochrom_c3_2 PF14537.6 gi|294495956|ref|YP_003542449.1| - 2.3e-09 37.6 21.8 0.021 15.3 13.9 5.1 2 1 1 3 3 3 2 Cytochrome c3 Paired_CXXCH_1 PF09699.10 gi|294495956|ref|YP_003542449.1| - 3.8e-07 29.7 28.1 0.057 13.2 0.5 6.6 5 1 0 6 6 6 3 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_CIII PF02085.16 gi|294495956|ref|YP_003542449.1| - 1.9e-05 24.9 17.7 0.41 11.0 4.3 4.6 3 1 1 4 4 4 2 Class III cytochrome C family Cytochrom_C552 PF02335.15 gi|294495956|ref|YP_003542449.1| - 0.058 12.3 20.1 7.2 5.4 17.3 4.2 2 1 0 2 2 2 0 Cytochrome c552 Cytochrom_NNT PF03264.14 gi|294495956|ref|YP_003542449.1| - 0.076 12.7 28.6 0.67 9.6 7.5 5.4 2 1 3 5 5 5 0 NapC/NirT cytochrome c family, N-terminal region Haem_bd PF14376.6 gi|294495956|ref|YP_003542449.1| - 0.5 10.3 14.7 0.83 9.6 0.0 5.8 5 1 2 7 7 7 0 Haem-binding domain DUF3795 PF12675.7 gi|294495956|ref|YP_003542449.1| - 0.66 10.4 11.9 0.98 9.9 2.8 3.5 2 2 1 3 3 3 0 Protein of unknown function (DUF3795) NapB PF03892.14 gi|294495956|ref|YP_003542449.1| - 0.78 9.8 17.3 1.2 9.2 1.3 4.8 3 2 0 3 3 3 0 Nitrate reductase cytochrome c-type subunit (NapB) Neuropep_like PF15161.6 gi|294495956|ref|YP_003542449.1| - 3.5 7.3 5.0 13 5.5 0.0 3.2 3 0 0 3 3 2 0 Neuropeptide-like DUF3365 PF11845.8 gi|294495956|ref|YP_003542449.1| - 5.1 7.4 0.0 5.1 7.4 0.0 5.6 3 1 3 6 6 6 0 Protein of unknown function (DUF3365) DUF4405 PF14358.6 gi|294495957|ref|YP_003542450.1| - 1.3e-05 25.6 15.1 0.00011 22.7 11.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4405) DUF647 PF04884.14 gi|294495957|ref|YP_003542450.1| - 0.016 14.8 0.5 0.021 14.4 0.5 1.2 1 0 0 1 1 1 0 Vitamin B6 photo-protection and homoeostasis SLAC1 PF03595.17 gi|294495957|ref|YP_003542450.1| - 0.034 13.4 4.2 0.041 13.2 4.2 1.2 1 0 0 1 1 1 0 Voltage-dependent anion channel Prominin PF05478.11 gi|294495957|ref|YP_003542450.1| - 0.055 11.4 0.2 0.08 10.9 0.2 1.2 1 0 0 1 1 1 0 Prominin Ni_hydr_CYTB PF01292.20 gi|294495957|ref|YP_003542450.1| - 0.09 12.4 9.9 0.34 10.5 9.9 1.8 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 DUF2070 PF09843.9 gi|294495957|ref|YP_003542450.1| - 0.19 9.9 5.3 0.21 9.8 5.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4079 PF13301.6 gi|294495957|ref|YP_003542450.1| - 1.8 8.7 7.0 2.6 8.2 7.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4079) Presenilin PF01080.17 gi|294495957|ref|YP_003542450.1| - 3.4 6.3 8.1 3.7 6.2 8.1 1.2 1 0 0 1 1 1 0 Presenilin 2-Hacid_dh_C PF02826.19 gi|294495958|ref|YP_003542451.1| - 4.8e-63 211.7 0.0 7.6e-63 211.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|294495958|ref|YP_003542451.1| - 1.3e-24 86.4 0.0 1.4e-24 86.2 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|294495958|ref|YP_003542451.1| - 0.00016 21.9 0.1 0.00028 21.1 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|294495958|ref|YP_003542451.1| - 0.0048 17.4 0.2 0.019 15.6 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 gi|294495958|ref|YP_003542451.1| - 0.023 14.8 0.1 0.047 13.8 0.1 1.5 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|294495958|ref|YP_003542451.1| - 0.12 11.6 0.6 0.81 8.9 0.3 2.3 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain YHS PF04945.13 gi|294495959|ref|YP_003542452.1| - 7.5e-14 51.6 0.9 1.1e-13 51.0 0.9 1.2 1 0 0 1 1 1 1 YHS domain AA_permease_2 PF13520.6 gi|294495960|ref|YP_003542453.1| - 2.7e-34 118.7 56.5 3.7e-34 118.3 56.5 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|294495960|ref|YP_003542453.1| - 8.3e-15 54.3 60.5 5.2e-13 48.4 61.0 2.1 1 1 0 1 1 1 1 Amino acid permease MAF_flag10 PF01973.18 gi|294495960|ref|YP_003542453.1| - 0.15 11.7 0.9 2.8 7.6 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function DUF115 SIR2_2 PF13289.6 gi|294495961|ref|YP_003542454.1| - 1.1e-07 32.0 0.0 3.6e-07 30.4 0.0 1.7 1 1 0 1 1 1 1 SIR2-like domain Glug PF07581.12 gi|294495963|ref|YP_003542456.1| - 7.2e-30 101.4 120.9 7.1e-05 23.0 2.6 13.8 13 0 0 13 13 13 10 The GLUG motif PKD PF00801.20 gi|294495963|ref|YP_003542456.1| - 2.7e-13 49.6 2.8 2.7e-13 49.6 2.8 2.6 2 0 0 2 2 2 1 PKD domain CarboxypepD_reg PF13620.6 gi|294495963|ref|YP_003542456.1| - 1.3e-11 44.6 1.4 3.7e-11 43.1 0.0 2.6 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain SdrD_B PF17210.3 gi|294495963|ref|YP_003542456.1| - 2.6e-08 34.1 0.5 2.6e-08 34.1 0.5 3.1 4 0 0 4 4 4 1 SdrD B-like domain CarbopepD_reg_2 PF13715.6 gi|294495963|ref|YP_003542456.1| - 5.1e-06 26.4 0.2 5.1e-06 26.4 0.2 2.8 2 0 0 2 2 2 1 CarboxypepD_reg-like domain DUF2012 PF09430.10 gi|294495963|ref|YP_003542456.1| - 0.0027 17.8 0.0 0.0065 16.6 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2012) EMP24_GP25L PF01105.24 gi|294495963|ref|YP_003542456.1| - 0.015 15.2 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD PKD_3 PF16820.5 gi|294495963|ref|YP_003542456.1| - 0.046 13.5 0.2 0.29 10.9 0.0 2.5 2 0 0 2 2 2 0 PKD-like domain DNA_pol_B_3 PF08408.10 gi|294495964|ref|YP_003542457.1| - 0.014 15.6 0.1 0.03 14.5 0.1 1.6 1 0 0 1 1 1 0 DNA polymerase family B viral insert Cas_Cas1 PF01867.16 gi|294495965|ref|YP_003542458.1| - 9.2e-76 254.7 0.0 1.3e-75 254.2 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 HEAT_2 PF13646.6 gi|294495966|ref|YP_003542459.1| - 0.032 14.6 0.0 11 6.5 0.0 2.7 1 1 0 2 2 2 0 HEAT repeats DUF3837 PF12939.7 gi|294495966|ref|YP_003542459.1| - 0.11 12.9 8.3 0.13 12.7 0.0 3.5 2 1 2 4 4 4 0 Domain of unknown function (DUF3837) HTH_1 PF00126.27 gi|294495967|ref|YP_003542460.1| - 0.022 14.7 0.1 0.83 9.7 0.1 2.4 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Glyco_hydro_2_C PF02836.17 gi|294495967|ref|YP_003542460.1| - 0.034 13.3 0.0 0.04 13.0 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 2, TIM barrel domain HTH_23 PF13384.6 gi|294495967|ref|YP_003542460.1| - 0.059 13.2 0.1 0.11 12.3 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain GerE PF00196.19 gi|294495967|ref|YP_003542460.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_28 PF13518.6 gi|294495967|ref|YP_003542460.1| - 0.12 12.5 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain RecA_dep_nuc PF16786.5 gi|294495968|ref|YP_003542461.1| - 0.029 14.5 0.1 0.039 14.1 0.1 1.3 1 0 0 1 1 1 0 Recombination enhancement, RecA-dependent nuclease DUF866 PF05907.13 gi|294495968|ref|YP_003542461.1| - 0.089 12.7 0.1 0.11 12.4 0.1 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) Prominin PF05478.11 gi|294495969|ref|YP_003542462.1| - 7.9e-05 20.8 1.1 0.00012 20.3 1.1 1.2 1 0 0 1 1 1 1 Prominin DUF445 PF04286.12 gi|294495969|ref|YP_003542462.1| - 0.0078 16.1 4.5 0.0091 15.8 4.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF445) Zn-ribbon_8 PF09723.10 gi|294495969|ref|YP_003542462.1| - 0.0094 16.0 1.1 0.018 15.1 1.1 1.4 1 0 0 1 1 1 1 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|294495969|ref|YP_003542462.1| - 0.01 15.8 0.4 0.091 12.7 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Spectrin PF00435.21 gi|294495969|ref|YP_003542462.1| - 0.013 16.0 3.2 0.096 13.2 0.9 2.3 2 0 0 2 2 2 0 Spectrin repeat zf-RRN7 PF11781.8 gi|294495969|ref|YP_003542462.1| - 0.014 15.1 0.5 0.17 11.6 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 HypA PF01155.19 gi|294495969|ref|YP_003542462.1| - 0.014 15.4 1.9 0.016 15.2 0.4 1.9 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF4164 PF13747.6 gi|294495969|ref|YP_003542462.1| - 0.034 14.4 9.3 1.6 9.1 6.9 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) Helicase_IV_N PF12462.8 gi|294495969|ref|YP_003542462.1| - 0.058 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 DNA helicase IV / RNA helicase N terminal FlgN PF05130.12 gi|294495969|ref|YP_003542462.1| - 0.13 12.8 5.6 0.26 11.8 5.6 1.6 1 1 0 1 1 1 0 FlgN protein Apolipoprotein PF01442.18 gi|294495969|ref|YP_003542462.1| - 0.13 12.1 5.0 1.2 8.9 0.9 2.1 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain HSBP1 PF06825.12 gi|294495969|ref|YP_003542462.1| - 0.32 10.9 9.5 2 8.4 0.0 3.8 3 1 1 4 4 4 0 Heat shock factor binding protein 1 Laminin_II PF06009.12 gi|294495969|ref|YP_003542462.1| - 0.36 10.9 11.4 2.6 8.1 3.1 2.3 2 0 0 2 2 2 0 Laminin Domain II Baculo_PEP_C PF04513.12 gi|294495969|ref|YP_003542462.1| - 0.38 10.8 7.9 2.9 8.0 1.6 2.3 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus PLC-beta_C PF08703.10 gi|294495969|ref|YP_003542462.1| - 0.43 10.5 11.7 1.7 8.6 4.9 2.1 1 1 1 2 2 2 0 PLC-beta C terminal DUF948 PF06103.11 gi|294495969|ref|YP_003542462.1| - 0.58 10.4 3.4 3.3 8.0 3.4 2.3 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF148 PF02520.17 gi|294495969|ref|YP_003542462.1| - 1.2 9.3 8.1 1.9 8.7 0.7 2.3 1 1 1 2 2 2 0 Domain of unknown function DUF148 DUF1515 PF07439.11 gi|294495969|ref|YP_003542462.1| - 1.2 9.2 3.8 1.4 8.9 0.9 2.5 2 2 2 4 4 4 0 Protein of unknown function (DUF1515) Matrilin_ccoil PF10393.9 gi|294495969|ref|YP_003542462.1| - 1.2 9.0 4.5 1.4 8.8 0.1 2.8 3 0 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF1451 PF07295.11 gi|294495969|ref|YP_003542462.1| - 2 8.4 10.1 0.61 10.1 2.0 2.6 2 1 0 2 2 2 0 Zinc-ribbon containing domain XhlA PF10779.9 gi|294495969|ref|YP_003542462.1| - 3.4 7.9 13.9 1.4 9.2 5.0 3.4 2 2 1 3 3 3 0 Haemolysin XhlA UPF0242 PF06785.11 gi|294495969|ref|YP_003542462.1| - 3.7 7.6 9.3 12 5.9 9.3 1.7 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF1507 PF07408.11 gi|294495969|ref|YP_003542462.1| - 5.2 7.0 6.7 0.66 9.9 0.3 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1507) KAP_NTPase PF07693.14 gi|294495970|ref|YP_003542463.1| - 3.8e-41 141.4 4.6 6.7e-41 140.6 4.6 1.3 1 0 0 1 1 1 1 KAP family P-loop domain AAA_22 PF13401.6 gi|294495970|ref|YP_003542463.1| - 1e-07 32.3 0.3 0.018 15.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|294495970|ref|YP_003542463.1| - 1.5e-07 32.0 0.0 1.7e-06 28.5 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain NB-ARC PF00931.22 gi|294495970|ref|YP_003542463.1| - 0.00029 20.1 1.1 0.16 11.1 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain NACHT PF05729.12 gi|294495970|ref|YP_003542463.1| - 0.0021 18.0 0.0 1.1 9.2 0.1 2.3 2 0 0 2 2 2 2 NACHT domain DUF2791 PF10923.8 gi|294495970|ref|YP_003542463.1| - 0.0053 15.7 0.1 0.15 10.8 0.0 2.3 2 0 0 2 2 2 1 P-loop Domain of unknown function (DUF2791) AAA PF00004.29 gi|294495970|ref|YP_003542463.1| - 0.016 15.6 0.4 2.7 8.4 0.2 3.0 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Viral_helicase1 PF01443.18 gi|294495970|ref|YP_003542463.1| - 0.1 12.3 0.0 0.25 11.1 0.0 1.6 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ABC_tran PF00005.27 gi|294495970|ref|YP_003542463.1| - 0.14 12.6 0.1 0.84 10.1 0.0 2.3 2 0 0 2 2 2 0 ABC transporter Oxidored_molyb PF00174.19 gi|294495971|ref|YP_003542464.1| - 6e-35 120.4 0.0 2.1e-34 118.6 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase molybdopterin binding domain SnoaL PF07366.12 gi|294495972|ref|YP_003542465.1| - 2.5e-30 104.9 0.2 3e-30 104.6 0.2 1.1 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|294495972|ref|YP_003542465.1| - 1e-14 55.0 0.1 1.3e-14 54.7 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain BEX PF04538.12 gi|294495972|ref|YP_003542465.1| - 0.15 12.7 0.0 0.18 12.4 0.0 1.2 1 0 0 1 1 1 0 Brain expressed X-linked like family Peptidase_M50 PF02163.22 gi|294495973|ref|YP_003542466.1| - 6e-24 84.7 0.1 8.6e-23 80.9 0.1 2.2 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|294495973|ref|YP_003542466.1| - 2.5e-18 66.2 2.7 8.7e-10 38.8 1.1 2.3 1 1 1 2 2 2 2 PDZ domain PDZ_6 PF17820.1 gi|294495973|ref|YP_003542466.1| - 4.7e-12 45.6 0.0 4.7e-05 23.2 0.0 2.4 2 0 0 2 2 2 2 PDZ domain PDZ PF00595.24 gi|294495973|ref|YP_003542466.1| - 2.6e-09 37.3 0.8 4.3e-05 23.8 0.0 2.4 2 0 0 2 2 2 2 PDZ domain Tricorn_PDZ PF14685.6 gi|294495973|ref|YP_003542466.1| - 9.8e-05 22.3 0.4 0.36 10.8 0.0 2.4 2 0 0 2 2 2 2 Tricorn protease PDZ domain PDZ_1 PF12812.7 gi|294495973|ref|YP_003542466.1| - 0.00027 20.9 0.4 0.62 10.1 0.1 2.4 2 0 0 2 2 2 2 PDZ-like domain Prion_bPrPp PF11587.8 gi|294495973|ref|YP_003542466.1| - 0.62 10.0 4.3 17 5.4 0.9 2.5 2 0 0 2 2 2 0 Major prion protein bPrPp - N terminal TrkA_N PF02254.18 gi|294495974|ref|YP_003542467.1| - 5.9e-25 87.8 1.1 8.3e-25 87.3 1.1 1.2 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|294495974|ref|YP_003542467.1| - 1.5e-12 47.3 11.1 2.6e-12 46.5 11.1 1.3 1 0 0 1 1 1 1 Ion channel Ion_trans PF00520.31 gi|294495974|ref|YP_003542467.1| - 0.00079 18.7 4.9 0.0013 18.1 4.9 1.3 1 0 0 1 1 1 1 Ion transport protein TrkA_C PF02080.21 gi|294495974|ref|YP_003542467.1| - 0.00093 19.0 0.0 0.0021 17.9 0.0 1.6 1 0 0 1 1 1 1 TrkA-C domain DUF2754 PF10953.8 gi|294495974|ref|YP_003542467.1| - 0.044 14.0 0.7 0.044 14.0 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2754) DUF4998 PF16389.5 gi|294495974|ref|YP_003542467.1| - 0.058 13.0 0.0 0.093 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function TrkA_N PF02254.18 gi|294495975|ref|YP_003542468.1| - 1e-26 93.5 0.2 1.7e-26 92.7 0.2 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|294495975|ref|YP_003542468.1| - 5.9e-11 42.0 0.3 1.8e-10 40.5 0.1 1.9 2 0 0 2 2 2 1 TrkA-C domain 2-Hacid_dh_C PF02826.19 gi|294495975|ref|YP_003542468.1| - 0.0095 15.3 0.0 0.034 13.5 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|294495975|ref|YP_003542468.1| - 0.026 15.0 0.0 0.35 11.4 0.0 2.1 2 0 0 2 2 2 0 XdhC Rossmann domain NAD_binding_7 PF13241.6 gi|294495975|ref|YP_003542468.1| - 0.056 13.9 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding DUF835 PF05763.12 gi|294495975|ref|YP_003542468.1| - 0.28 10.9 1.6 0.73 9.6 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF835) TauE PF01925.19 gi|294495976|ref|YP_003542469.1| - 7.9e-41 140.2 34.2 9.6e-41 140.0 34.2 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE tRNA_synthFbeta PF17759.1 gi|294495977|ref|YP_003542470.1| - 2.6e-43 147.9 0.0 3.7e-43 147.5 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|294495977|ref|YP_003542470.1| - 2.6e-15 56.5 0.3 1.9e-14 53.7 0.0 2.5 3 0 0 3 3 3 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|294495977|ref|YP_003542470.1| - 1.1e-14 54.5 0.0 2.1e-14 53.6 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.20 gi|294495977|ref|YP_003542470.1| - 1.4e-05 24.7 0.1 5.1e-05 22.9 0.1 1.9 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) PhetRS_B1 PF18262.1 gi|294495977|ref|YP_003542470.1| - 0.0052 17.0 0.0 0.73 10.1 0.0 3.1 2 1 0 2 2 2 1 Phe-tRNA synthetase beta subunit B1 domain PARP_regulatory PF01358.18 gi|294495977|ref|YP_003542470.1| - 0.17 10.8 0.0 0.27 10.1 0.0 1.2 1 0 0 1 1 1 0 Poly A polymerase regulatory subunit T2SSE PF00437.20 gi|294495978|ref|YP_003542471.1| - 1.5e-49 168.5 0.0 3.1e-49 167.5 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein ArsR PF09824.9 gi|294495978|ref|YP_003542471.1| - 0.059 13.0 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 ArsR transcriptional regulator T2SSF PF00482.23 gi|294495979|ref|YP_003542472.1| - 1.2e-35 122.1 0.7 1.5e-18 66.9 0.0 4.2 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F Pex24p PF06398.11 gi|294495979|ref|YP_003542472.1| - 0.025 13.6 2.2 1.4 7.8 0.0 2.6 2 2 0 2 2 2 0 Integral peroxisomal membrane peroxin DivIC PF04977.15 gi|294495979|ref|YP_003542472.1| - 0.044 13.6 0.1 0.13 12.0 0.1 1.9 1 0 0 1 1 1 0 Septum formation initiator DUF2207 PF09972.9 gi|294495979|ref|YP_003542472.1| - 0.048 12.4 19.2 0.052 12.3 1.4 3.6 3 1 0 3 3 3 0 Predicted membrane protein (DUF2207) PspB PF06667.12 gi|294495979|ref|YP_003542472.1| - 1.1 9.3 0.0 1.1 9.3 0.0 3.3 4 0 0 4 4 4 0 Phage shock protein B RNase_HII PF01351.18 gi|294495980|ref|YP_003542473.1| - 6.2e-53 179.6 0.1 7e-53 179.4 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII Orthopox_A47 PF06334.11 gi|294495980|ref|YP_003542473.1| - 0.015 14.6 1.2 3.4 6.8 0.1 2.2 1 1 1 2 2 2 0 Orthopoxvirus A47 protein Peroxin-22 PF12827.7 gi|294495980|ref|YP_003542473.1| - 0.091 12.7 0.0 0.18 11.7 0.0 1.6 1 1 0 1 1 1 0 Peroxisomal biogenesis protein family GATase_5 PF13507.6 gi|294495981|ref|YP_003542474.1| - 4.1e-48 163.7 0.0 4.7e-48 163.5 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|294495981|ref|YP_003542474.1| - 1.1e-09 38.3 0.0 1.6e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|294495981|ref|YP_003542474.1| - 2.7e-08 33.7 0.1 6.8e-08 32.3 0.0 1.6 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|294495981|ref|YP_003542474.1| - 7.8e-07 29.0 0.0 1.3e-06 28.3 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|294495981|ref|YP_003542474.1| - 0.00085 19.2 0.0 0.0028 17.5 0.0 1.7 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|294495981|ref|YP_003542474.1| - 0.016 15.0 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 PurS PF02700.14 gi|294495982|ref|YP_003542475.1| - 4.8e-28 97.2 0.1 5.3e-28 97.0 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DpnD-PcfM PF14207.6 gi|294495982|ref|YP_003542475.1| - 0.019 14.9 0.2 0.03 14.2 0.2 1.4 1 0 0 1 1 1 0 DpnD/PcfM-like protein CDP-OH_P_transf PF01066.21 gi|294495983|ref|YP_003542476.1| - 7.8e-13 49.0 3.1 7.8e-13 49.0 3.1 2.6 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF5326 PF17260.2 gi|294495983|ref|YP_003542476.1| - 1.3 9.2 5.6 0.6 10.3 1.2 2.5 2 1 1 3 3 3 0 Family of unknown function (DUF5326) TPR_1 PF00515.28 gi|294495984|ref|YP_003542477.1| - 1.7e-10 40.2 1.8 7.1e-05 22.4 0.0 3.1 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|294495984|ref|YP_003542477.1| - 1.3e-09 37.4 0.2 3.6e-05 23.5 0.0 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|294495984|ref|YP_003542477.1| - 2.8e-06 27.1 1.2 1.2 9.5 0.2 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|294495984|ref|YP_003542477.1| - 6.8e-05 23.1 0.6 0.18 12.1 0.0 2.9 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|294495984|ref|YP_003542477.1| - 0.00021 20.9 0.1 0.3 10.8 0.0 2.9 2 1 0 2 2 2 2 TPR repeat Fis1_TPR_C PF14853.6 gi|294495984|ref|YP_003542477.1| - 0.0089 16.1 0.5 0.025 14.6 0.1 1.9 2 0 0 2 2 2 1 Fis1 C-terminal tetratricopeptide repeat TPR_7 PF13176.6 gi|294495984|ref|YP_003542477.1| - 0.04 14.0 0.2 12 6.2 0.0 3.0 2 1 1 3 3 3 0 Tetratricopeptide repeat MIT PF04212.18 gi|294495984|ref|YP_003542477.1| - 0.062 13.4 2.7 6.7 6.9 0.1 2.8 2 1 1 3 3 3 0 MIT (microtubule interacting and transport) domain TPR_1 PF00515.28 gi|294495985|ref|YP_003542478.1| - 2.3e-12 46.2 0.1 2.2e-07 30.4 0.0 3.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|294495985|ref|YP_003542478.1| - 3.5e-10 39.2 0.2 4.8e-07 29.4 0.0 3.6 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|294495985|ref|YP_003542478.1| - 2.2e-09 36.8 0.1 2.2e-08 33.7 0.0 2.4 2 1 0 2 2 2 1 TPR repeat TPR_17 PF13431.6 gi|294495985|ref|YP_003542478.1| - 2.8e-07 30.4 0.0 0.0007 19.8 0.0 2.5 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|294495985|ref|YP_003542478.1| - 3.3e-06 26.9 0.1 8e-05 22.5 0.0 2.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_9 PF13371.6 gi|294495985|ref|YP_003542478.1| - 4e-06 26.9 0.2 0.0064 16.6 0.0 1.8 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|294495985|ref|YP_003542478.1| - 1.8e-05 24.4 0.0 0.00017 21.4 0.0 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|294495985|ref|YP_003542478.1| - 0.00084 19.6 0.0 0.0014 18.9 0.0 1.5 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|294495985|ref|YP_003542478.1| - 0.0048 17.5 0.0 0.0092 16.6 0.0 1.5 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|294495985|ref|YP_003542478.1| - 0.0054 17.5 0.0 0.17 12.8 0.0 2.2 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|294495985|ref|YP_003542478.1| - 0.032 14.8 0.0 0.055 14.0 0.0 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|294495985|ref|YP_003542478.1| - 0.13 12.3 0.0 0.29 11.2 0.0 1.5 2 0 0 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat Aminotran_1_2 PF00155.21 gi|294495987|ref|YP_003542480.1| - 4.3e-58 197.2 0.0 4.9e-58 197.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|294495987|ref|YP_003542480.1| - 0.00014 20.5 0.0 0.00022 19.9 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|294495987|ref|YP_003542480.1| - 0.00038 19.9 0.0 0.00055 19.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|294495987|ref|YP_003542480.1| - 0.0084 15.1 0.0 0.013 14.5 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V E1-E2_ATPase PF00122.20 gi|294495988|ref|YP_003542481.1| - 4.1e-53 179.6 1.8 4.1e-53 179.6 1.8 3.9 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|294495988|ref|YP_003542481.1| - 1.5e-35 122.6 12.5 1.5e-35 122.6 12.5 2.2 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|294495988|ref|YP_003542481.1| - 1.5e-24 87.4 0.0 3.1e-24 86.4 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|294495988|ref|YP_003542481.1| - 4.8e-17 61.4 0.0 1.7e-16 59.7 0.0 2.0 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|294495988|ref|YP_003542481.1| - 1.6e-12 47.4 0.0 4.9e-12 45.8 0.0 1.9 2 0 0 2 2 2 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|294495988|ref|YP_003542481.1| - 4.5e-09 36.4 0.6 2.9e-05 24.0 0.4 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|294495988|ref|YP_003542481.1| - 8.1e-06 26.4 0.0 1.9e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase FAD_binding_4 PF01565.23 gi|294495988|ref|YP_003542481.1| - 0.032 14.0 0.2 0.36 10.6 0.0 2.6 3 0 0 3 3 3 0 FAD binding domain Radical_SAM PF04055.21 gi|294495988|ref|YP_003542481.1| - 0.089 13.2 0.2 0.76 10.1 0.0 2.5 2 1 0 2 2 2 0 Radical SAM superfamily DUF5455 PF17537.2 gi|294495988|ref|YP_003542481.1| - 0.09 13.2 0.3 0.09 13.2 0.3 4.3 4 2 1 5 5 5 0 Family of unknown function (DUF5455) Pyrophosphatase PF00719.19 gi|294495989|ref|YP_003542482.1| - 1.2e-53 181.2 0.1 1.4e-53 181.0 0.1 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase OKR_DC_1_N PF03709.15 gi|294495989|ref|YP_003542482.1| - 0.028 14.7 0.0 0.13 12.6 0.0 1.9 1 1 1 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain TruB_C_2 PF16198.5 gi|294495990|ref|YP_003542483.1| - 6.9e-27 93.4 0.0 1.2e-26 92.6 0.0 1.4 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain TruB_N PF01509.18 gi|294495990|ref|YP_003542483.1| - 2.4e-26 92.9 0.0 3.1e-14 53.6 0.0 3.1 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.12 gi|294495990|ref|YP_003542483.1| - 1.4e-20 73.1 0.1 2.7e-20 72.2 0.1 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.20 gi|294495990|ref|YP_003542483.1| - 1.9e-15 56.6 1.4 2.2e-15 56.4 0.3 1.7 2 0 0 2 2 2 1 PUA domain Asp23 PF03780.13 gi|294495990|ref|YP_003542483.1| - 0.14 12.5 0.0 0.41 11.1 0.0 1.8 1 0 0 1 1 1 0 Asp23 family, cell envelope-related function Cytidylate_kin2 PF13189.6 gi|294495991|ref|YP_003542484.1| - 9.4e-18 65.0 0.3 4e-16 59.7 0.3 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|294495991|ref|YP_003542484.1| - 3e-12 47.2 0.0 4.3e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|294495991|ref|YP_003542484.1| - 9.6e-12 45.5 0.0 2.6e-11 44.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|294495991|ref|YP_003542484.1| - 5.3e-10 39.4 0.8 0.00014 21.7 0.2 2.1 1 1 1 2 2 2 2 Cytidylate kinase ADK PF00406.22 gi|294495991|ref|YP_003542484.1| - 1.2e-05 25.4 0.0 3.2e-05 24.1 0.0 1.8 1 1 1 2 2 2 1 Adenylate kinase AAA_33 PF13671.6 gi|294495991|ref|YP_003542484.1| - 0.00015 22.0 0.0 0.016 15.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain Sulfotransfer_3 PF13469.6 gi|294495991|ref|YP_003542484.1| - 0.0018 18.7 0.0 0.0021 18.5 0.0 1.3 1 0 0 1 1 1 1 Sulfotransferase family SKI PF01202.22 gi|294495991|ref|YP_003542484.1| - 0.0044 17.1 0.3 0.012 15.7 0.2 1.6 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.6 gi|294495991|ref|YP_003542484.1| - 0.0045 17.3 0.0 0.0074 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|294495991|ref|YP_003542484.1| - 0.039 13.6 0.2 1.8 8.2 0.0 2.1 1 1 1 2 2 2 0 Dephospho-CoA kinase EMC3_TMCO1 PF01956.16 gi|294495992|ref|YP_003542485.1| - 2.3e-46 157.6 8.8 2.9e-46 157.3 8.8 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like HPIH PF13323.6 gi|294495992|ref|YP_003542485.1| - 0.035 13.9 0.5 0.054 13.3 0.0 1.5 2 0 0 2 2 2 0 N-terminal domain with HPIH motif DUF4634 PF15465.6 gi|294495992|ref|YP_003542485.1| - 0.05 13.9 0.1 0.084 13.2 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4634) DUF4035 PF13227.6 gi|294495992|ref|YP_003542485.1| - 0.1 12.3 0.4 0.18 11.5 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4035) RRF_GI PF12614.8 gi|294495992|ref|YP_003542485.1| - 0.11 12.7 0.7 0.17 12.0 0.7 1.3 1 0 0 1 1 1 0 Ribosome recycling factor ADK PF00406.22 gi|294495993|ref|YP_003542486.1| - 2.3e-59 199.8 0.0 2.8e-59 199.6 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|294495993|ref|YP_003542486.1| - 8.9e-29 100.6 0.1 2.8e-28 99.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain ADK_lid PF05191.14 gi|294495993|ref|YP_003542486.1| - 8.7e-16 57.6 3.5 1.1e-15 57.3 2.0 1.9 2 1 0 2 2 2 1 Adenylate kinase, active site lid Hydin_ADK PF17213.3 gi|294495993|ref|YP_003542486.1| - 5e-06 26.9 0.1 0.033 14.5 0.0 2.2 1 1 1 2 2 2 2 Hydin Adenylate kinase-like domain AAA_18 PF13238.6 gi|294495993|ref|YP_003542486.1| - 5.2e-05 23.8 0.0 0.00015 22.3 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|294495993|ref|YP_003542486.1| - 7.8e-05 22.9 0.0 0.00019 21.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 gi|294495993|ref|YP_003542486.1| - 0.011 15.5 0.1 0.076 12.7 0.0 2.2 3 0 0 3 3 3 0 Thymidylate kinase AAA_28 PF13521.6 gi|294495993|ref|YP_003542486.1| - 0.014 15.7 0.0 0.022 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|294495993|ref|YP_003542486.1| - 0.018 14.8 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 Cytidylate kinase AAA PF00004.29 gi|294495993|ref|YP_003542486.1| - 0.061 13.8 0.0 0.16 12.4 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TF_Zn_Ribbon PF08271.12 gi|294495993|ref|YP_003542486.1| - 0.082 12.4 1.7 0.17 11.4 1.7 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding Mg_chelatase PF01078.21 gi|294495993|ref|YP_003542486.1| - 0.1 12.0 0.0 0.22 10.9 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|294495993|ref|YP_003542486.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain SecY PF00344.20 gi|294495994|ref|YP_003542487.1| - 1.1e-64 218.6 23.7 1.3e-64 218.4 23.7 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|294495994|ref|YP_003542487.1| - 1.8e-10 40.5 3.5 2.6e-10 40.0 1.1 2.4 2 0 0 2 2 2 1 Plug domain of Sec61p Phage_holin_5_1 PF06946.11 gi|294495994|ref|YP_003542487.1| - 0.036 14.4 1.5 0.36 11.2 1.5 2.7 1 1 0 1 1 1 0 Bacteriophage A118-like holin, Hol118 Ribosomal_L27A PF00828.19 gi|294495995|ref|YP_003542488.1| - 2.1e-22 80.1 0.9 2.7e-22 79.8 0.9 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|294495995|ref|YP_003542488.1| - 0.0036 16.7 0.0 0.0058 16.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L30 PF00327.20 gi|294495996|ref|YP_003542489.1| - 5.6e-15 55.0 0.2 8.7e-15 54.3 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.20 gi|294495997|ref|YP_003542490.1| - 1.4e-24 85.9 1.2 3.6e-24 84.5 1.2 1.8 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|294495997|ref|YP_003542490.1| - 6.9e-24 83.1 0.1 1.2e-23 82.3 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L5e PF17144.4 gi|294495998|ref|YP_003542491.1| - 4.2e-32 111.4 0.2 5.9e-21 75.2 0.1 2.2 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|294495998|ref|YP_003542491.1| - 0.00065 20.0 0.0 0.00089 19.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|294495999|ref|YP_003542492.1| - 6.2e-58 194.9 6.9 7e-58 194.8 6.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L32e PF01655.18 gi|294496000|ref|YP_003542493.1| - 6e-34 116.7 0.0 7.5e-34 116.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.23 gi|294496001|ref|YP_003542494.1| - 8e-23 80.9 2.2 1.2e-13 51.5 0.2 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 HCBP_related PF06594.11 gi|294496001|ref|YP_003542494.1| - 0.11 12.4 0.2 24 5.0 0.1 2.6 2 0 0 2 2 2 0 Haemolysin-type calcium binding protein related domain Ribosomal_S8 PF00410.19 gi|294496002|ref|YP_003542495.1| - 5.3e-28 97.5 0.0 6.4e-28 97.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|294496003|ref|YP_003542496.1| - 7.5e-15 54.4 4.3 8.4e-15 54.3 4.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-P11 PF03854.14 gi|294496003|ref|YP_003542496.1| - 0.013 15.1 0.7 0.017 14.7 0.7 1.2 1 0 0 1 1 1 0 P-11 zinc finger DUF4428 PF14471.6 gi|294496003|ref|YP_003542496.1| - 0.037 14.0 0.1 0.042 13.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) MRNIP PF15749.5 gi|294496003|ref|YP_003542496.1| - 0.068 13.9 0.7 0.07 13.9 0.7 1.1 1 0 0 1 1 1 0 MRN-interacting protein DUF2757 PF10955.8 gi|294496003|ref|YP_003542496.1| - 1.8 8.9 5.8 3.3 8.0 0.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2757) Ribosomal_L5_C PF00673.21 gi|294496004|ref|YP_003542497.1| - 1.1e-26 92.8 0.0 2.4e-26 91.7 0.0 1.6 2 0 0 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|294496004|ref|YP_003542497.1| - 9e-17 61.2 0.0 1.6e-16 60.3 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.20 gi|294496005|ref|YP_003542498.1| - 2.5e-20 72.2 0.1 4.3e-20 71.4 0.1 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|294496005|ref|YP_003542498.1| - 1.9e-11 43.9 3.0 2.9e-11 43.3 3.0 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|294496005|ref|YP_003542498.1| - 7.6e-09 35.2 1.5 1.9e-08 33.9 1.5 1.7 1 0 0 1 1 1 1 S4 domain KOW PF00467.29 gi|294496005|ref|YP_003542498.1| - 0.0015 18.4 0.1 0.0044 16.9 0.1 1.9 1 0 0 1 1 1 1 KOW motif S4_2 PF13275.6 gi|294496005|ref|YP_003542498.1| - 0.0018 18.0 0.0 0.0041 16.9 0.0 1.6 1 0 0 1 1 1 1 S4 domain DUF3994 PF13159.6 gi|294496005|ref|YP_003542498.1| - 0.093 13.3 0.1 0.19 12.3 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3994) Ribosomal_L26 PF16906.5 gi|294496006|ref|YP_003542499.1| - 7.7e-27 93.6 0.1 1e-26 93.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|294496006|ref|YP_003542499.1| - 7.1e-05 22.6 1.4 0.00017 21.4 1.4 1.7 1 1 0 1 1 1 1 KOW motif Ribosomal_L14 PF00238.19 gi|294496007|ref|YP_003542500.1| - 9.9e-37 125.7 0.4 1.1e-36 125.6 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 gi|294496008|ref|YP_003542501.1| - 1.7e-28 98.5 2.3 2.1e-28 98.2 2.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|294496008|ref|YP_003542501.1| - 0.063 13.7 0.1 0.21 12.0 0.0 1.9 2 0 0 2 2 2 0 Ribosomal_S17 N-terminal UPF0086 PF01868.16 gi|294496009|ref|YP_003542502.1| - 8.5e-23 80.1 0.0 9.6e-23 79.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|294496010|ref|YP_003542503.1| - 3.9e-18 65.2 1.0 4.8e-18 64.9 1.0 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein DsrD PF08679.11 gi|294496010|ref|YP_003542503.1| - 0.014 15.7 0.1 0.025 14.8 0.1 1.4 1 0 0 1 1 1 0 Dissimilatory sulfite reductase D (DsrD) HSBP1 PF06825.12 gi|294496010|ref|YP_003542503.1| - 0.13 12.1 2.3 0.14 12.0 0.7 1.8 2 0 0 2 2 2 0 Heat shock factor binding protein 1 MerR-DNA-bind PF09278.11 gi|294496010|ref|YP_003542503.1| - 0.25 11.9 2.8 5.9 7.5 0.2 2.4 2 1 0 2 2 2 0 MerR, DNA binding YvrJ PF12841.7 gi|294496010|ref|YP_003542503.1| - 1.9 8.1 3.8 3.4 7.3 1.3 2.1 2 0 0 2 2 2 0 YvrJ protein family Ribosomal_S3_C PF00189.20 gi|294496011|ref|YP_003542504.1| - 4.3e-21 75.2 0.7 1e-20 74.0 0.7 1.7 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|294496011|ref|YP_003542504.1| - 8.5e-16 57.6 0.0 1.9e-15 56.4 0.0 1.7 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|294496011|ref|YP_003542504.1| - 1.6 8.6 4.9 0.41 10.5 0.2 2.5 3 0 0 3 3 3 0 KH domain Trypan_PARP PF05887.11 gi|294496011|ref|YP_003542504.1| - 4.8 7.2 19.5 8.6 6.3 19.5 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Ribosomal_L22 PF00237.19 gi|294496012|ref|YP_003542505.1| - 2.9e-31 107.7 0.1 3.5e-31 107.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|294496013|ref|YP_003542506.1| - 3.8e-27 94.0 0.3 5.3e-27 93.5 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.18 gi|294496014|ref|YP_003542507.1| - 3.9e-45 153.1 0.7 1.2e-44 151.6 0.7 1.7 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|294496014|ref|YP_003542507.1| - 2e-16 59.7 0.0 8.2e-16 57.7 0.0 2.1 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|294496015|ref|YP_003542508.1| - 6.6e-14 52.0 2.0 1.5e-13 50.9 2.0 1.5 1 1 0 1 1 1 1 Ribosomal protein L23 gag-asp_proteas PF13975.6 gi|294496015|ref|YP_003542508.1| - 0.016 15.8 0.1 0.018 15.6 0.1 1.2 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|294496015|ref|YP_003542508.1| - 0.073 13.7 0.0 0.087 13.5 0.0 1.1 1 0 0 1 1 1 0 Aspartyl protease Ribosomal_L4 PF00573.22 gi|294496016|ref|YP_003542509.1| - 9.7e-46 155.9 0.2 1.1e-45 155.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 gi|294496017|ref|YP_003542510.1| - 4.3e-91 305.6 0.1 5.3e-91 305.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L3 Methyltransf_15 PF09445.10 gi|294496018|ref|YP_003542511.1| - 1.9e-14 53.6 0.1 1.1e-13 51.1 0.0 2.0 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|294496018|ref|YP_003542511.1| - 3.9e-09 37.1 0.0 9.7e-09 35.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|294496018|ref|YP_003542511.1| - 3.8e-08 33.3 0.0 5.8e-08 32.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|294496018|ref|YP_003542511.1| - 9.4e-08 31.7 0.0 2e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_11 PF08241.12 gi|294496018|ref|YP_003542511.1| - 2.1e-05 25.1 0.0 4.7e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|294496018|ref|YP_003542511.1| - 6.1e-05 23.0 0.1 0.00057 19.8 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.16 gi|294496018|ref|YP_003542511.1| - 0.00011 22.0 0.0 0.00027 20.7 0.0 1.7 1 0 0 1 1 1 1 Met-10+ like-protein tRNA_U5-meth_tr PF05958.11 gi|294496018|ref|YP_003542511.1| - 0.00026 20.1 0.0 0.00047 19.2 0.0 1.3 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase MTS PF05175.14 gi|294496018|ref|YP_003542511.1| - 0.0026 17.3 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.20 gi|294496018|ref|YP_003542511.1| - 0.0029 16.7 0.0 0.0045 16.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CmcI PF04989.12 gi|294496018|ref|YP_003542511.1| - 0.003 17.3 0.0 0.0056 16.4 0.0 1.3 1 0 0 1 1 1 1 Cephalosporin hydroxylase Methyltransf_12 PF08242.12 gi|294496018|ref|YP_003542511.1| - 0.012 16.3 0.0 0.047 14.4 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|294496018|ref|YP_003542511.1| - 0.027 14.6 0.0 0.05 13.7 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase PrmA PF06325.13 gi|294496018|ref|YP_003542511.1| - 0.031 13.7 0.0 0.049 13.0 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|294496018|ref|YP_003542511.1| - 0.044 13.6 0.0 0.88 9.4 0.0 2.4 2 2 0 2 2 2 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|294496018|ref|YP_003542511.1| - 0.047 13.3 0.0 0.082 12.5 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Cons_hypoth95 PF03602.15 gi|294496018|ref|YP_003542511.1| - 0.084 12.5 0.1 0.19 11.4 0.0 1.5 2 0 0 2 2 2 0 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|294496018|ref|YP_003542511.1| - 0.093 12.0 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family DOT1 PF08123.13 gi|294496018|ref|YP_003542511.1| - 0.15 11.6 0.0 0.32 10.5 0.0 1.5 1 0 0 1 1 1 0 Histone methylation protein DOT1 UPF0020 PF01170.18 gi|294496018|ref|YP_003542511.1| - 0.16 11.6 0.0 0.37 10.5 0.0 1.6 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 TrkA_N PF02254.18 gi|294496018|ref|YP_003542511.1| - 0.16 12.2 0.0 0.48 10.7 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain PCMT PF01135.19 gi|294496018|ref|YP_003542511.1| - 0.19 11.4 0.0 0.33 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF948 PF06103.11 gi|294496018|ref|YP_003542511.1| - 0.23 11.8 0.2 0.48 10.7 0.2 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Response_reg PF00072.24 gi|294496019|ref|YP_003542512.1| - 7.3e-27 93.8 0.0 8.1e-27 93.6 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain FleQ PF06490.11 gi|294496019|ref|YP_003542512.1| - 0.0021 18.4 0.0 0.0031 17.9 0.0 1.3 1 1 0 1 1 1 1 Flagellar regulatory protein FleQ HSP20 PF00011.21 gi|294496020|ref|YP_003542513.1| - 1.6e-06 28.2 0.1 2.9e-05 24.2 0.1 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|294496020|ref|YP_003542513.1| - 0.00027 20.4 0.0 0.00041 19.8 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA DUF4709 PF15821.5 gi|294496021|ref|YP_003542514.1| - 0.0094 16.2 0.1 0.012 15.9 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4709) CAF20 PF17052.5 gi|294496021|ref|YP_003542514.1| - 0.063 13.4 0.0 0.063 13.4 0.0 1.0 1 0 0 1 1 1 0 Cap associated factor Nucleoporin_FG2 PF15967.5 gi|294496021|ref|YP_003542514.1| - 0.17 10.4 0.1 0.17 10.4 0.1 1.0 1 0 0 1 1 1 0 Nucleoporin FG repeated region DUF1724 PF08350.10 gi|294496022|ref|YP_003542515.1| - 3.5e-19 68.7 0.1 7.6e-19 67.6 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_11 PF08279.12 gi|294496022|ref|YP_003542515.1| - 0.018 15.0 0.0 0.071 13.1 0.0 2.0 2 0 0 2 2 2 0 HTH domain HD_4 PF13328.6 gi|294496023|ref|YP_003542516.1| - 9.1e-15 54.7 0.0 1.3e-14 54.3 0.0 1.1 1 0 0 1 1 1 1 HD domain CbiZ PF01955.18 gi|294496024|ref|YP_003542517.1| - 9.3e-56 189.0 0.0 1.2e-55 188.6 0.0 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase OMPdecase PF00215.24 gi|294496025|ref|YP_003542518.1| - 1.3e-35 123.1 0.0 1.6e-35 122.8 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family S6PP_C PF08472.10 gi|294496025|ref|YP_003542518.1| - 0.075 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Sucrose-6-phosphate phosphohydrolase C-terminal AMP-binding PF00501.28 gi|294496026|ref|YP_003542519.1| - 5e-100 335.0 0.0 7e-100 334.6 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|294496026|ref|YP_003542519.1| - 3.8e-27 95.1 0.5 8e-27 94.0 0.5 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|294496026|ref|YP_003542519.1| - 8e-18 64.1 5.6 8e-18 64.1 5.6 2.4 3 0 0 3 3 3 1 Acetyl-coenzyme A synthetase N-terminus Radical_SAM PF04055.21 gi|294496027|ref|YP_003542520.1| - 1.5e-09 38.5 0.8 1.8e-08 34.9 0.1 2.4 1 1 0 2 2 2 1 Radical SAM superfamily NCD3G PF07562.14 gi|294496027|ref|YP_003542520.1| - 0.0027 17.6 0.8 0.0056 16.6 0.8 1.5 1 0 0 1 1 1 1 Nine Cysteines Domain of family 3 GPCR DUF5320 PF17253.2 gi|294496028|ref|YP_003542521.1| - 1.1e-21 77.7 5.7 1.4e-21 77.4 5.7 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5320) bZIP_2 PF07716.15 gi|294496028|ref|YP_003542521.1| - 0.042 13.9 3.2 0.062 13.4 3.2 1.2 1 0 0 1 1 1 0 Basic region leucine zipper Uds1 PF15456.6 gi|294496028|ref|YP_003542521.1| - 0.083 13.1 0.2 0.11 12.6 0.2 1.1 1 0 0 1 1 1 0 Up-regulated During Septation HALZ PF02183.18 gi|294496028|ref|YP_003542521.1| - 0.37 11.0 4.6 0.55 10.5 4.6 1.2 1 0 0 1 1 1 0 Homeobox associated leucine zipper DUF134 PF02001.16 gi|294496029|ref|YP_003542522.1| - 3.4e-16 59.6 0.0 4.3e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 HTH_23 PF13384.6 gi|294496029|ref|YP_003542522.1| - 0.0016 18.2 0.0 0.0027 17.4 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|294496029|ref|YP_003542522.1| - 0.002 17.8 0.1 0.0028 17.3 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|294496029|ref|YP_003542522.1| - 0.0043 17.0 0.0 0.0043 17.0 0.0 1.8 2 0 0 2 2 1 1 Winged helix-turn helix HTH_psq PF05225.16 gi|294496029|ref|YP_003542522.1| - 0.0044 16.7 0.0 0.0089 15.7 0.0 1.4 1 0 0 1 1 1 1 helix-turn-helix, Psq domain UPF0175 PF03683.13 gi|294496029|ref|YP_003542522.1| - 0.0087 15.7 0.2 0.023 14.4 0.1 1.6 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0175) HTH_37 PF13744.6 gi|294496029|ref|YP_003542522.1| - 0.011 15.7 0.1 0.02 14.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF5320 PF17253.2 gi|294496029|ref|YP_003542522.1| - 0.016 16.3 11.6 0.016 16.3 11.6 1.7 2 0 0 2 2 1 0 Family of unknown function (DUF5320) zf-C4_Topoisom PF01396.19 gi|294496029|ref|YP_003542522.1| - 0.037 13.8 6.6 0.059 13.2 0.3 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger HTH_3 PF01381.22 gi|294496029|ref|YP_003542522.1| - 0.078 13.0 0.2 0.13 12.4 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix HTH_38 PF13936.6 gi|294496029|ref|YP_003542522.1| - 0.1 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Zn-ribbon_8 PF09723.10 gi|294496029|ref|YP_003542522.1| - 0.1 12.7 9.5 0.41 10.8 9.1 2.1 1 1 1 2 2 2 0 Zinc ribbon domain HTH_10 PF04967.12 gi|294496029|ref|YP_003542522.1| - 0.12 12.2 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 HTH DNA binding domain zf-ribbon_3 PF13248.6 gi|294496029|ref|YP_003542522.1| - 0.19 11.2 10.1 33 4.1 10.2 2.5 1 1 0 1 1 1 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|294496029|ref|YP_003542522.1| - 0.21 11.6 0.4 0.21 11.6 0.4 2.7 3 0 0 3 3 2 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|294496029|ref|YP_003542522.1| - 0.24 11.0 4.0 1.7 8.2 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|294496029|ref|YP_003542522.1| - 0.47 10.3 6.4 5 7.0 0.8 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.6 gi|294496029|ref|YP_003542522.1| - 0.61 10.2 4.7 1.3 9.1 4.7 1.5 1 0 0 1 1 1 0 Transposase zinc-binding domain HypA PF01155.19 gi|294496029|ref|YP_003542522.1| - 0.82 9.7 6.0 0.84 9.7 4.7 1.6 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-IS66 PF13005.7 gi|294496029|ref|YP_003542522.1| - 0.94 9.9 9.1 6.6 7.2 2.6 2.4 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-ACC PF17848.1 gi|294496029|ref|YP_003542522.1| - 0.97 9.6 6.7 2.9 8.0 0.3 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Ogr_Delta PF04606.12 gi|294496029|ref|YP_003542522.1| - 3 7.9 6.8 2 8.5 0.4 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger NRDD PF13597.6 gi|294496029|ref|YP_003542522.1| - 3.5 6.3 3.8 4.9 5.8 3.8 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DUF3797 PF12677.7 gi|294496029|ref|YP_003542522.1| - 8 6.4 6.3 24 4.9 0.7 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) H_PPase PF03030.16 gi|294496031|ref|YP_003542524.1| - 1.1e-266 886.7 55.0 1.3e-266 886.5 55.0 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase ArAE_2_N PF10337.9 gi|294496031|ref|YP_003542524.1| - 3.8 6.4 10.3 4.4 6.2 1.3 2.4 2 0 0 2 2 2 0 Putative ER transporter, 6TM, N-terminal DUF3397 PF11877.8 gi|294496031|ref|YP_003542524.1| - 6.1 7.1 15.6 0.44 10.8 6.2 3.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3397) DUF523 PF04463.12 gi|294496032|ref|YP_003542525.1| - 2.2e-06 27.8 0.0 2.9e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF523) ER_lumen_recept PF00810.18 gi|294496033|ref|YP_003542526.1| - 1.2 10.0 12.3 0.19 12.5 3.1 2.6 2 1 0 2 2 2 0 ER lumen protein retaining receptor DUF3176 PF11374.8 gi|294496033|ref|YP_003542526.1| - 6.4 7.0 10.4 1 9.6 0.2 3.2 4 0 0 4 4 4 0 Protein of unknown function (DUF3176) Bac_export_2 PF01312.19 gi|294496033|ref|YP_003542526.1| - 8.7 5.4 20.3 1.6 7.9 15.8 1.8 1 1 1 2 2 2 0 FlhB HrpN YscU SpaS Family ATP_bind_3 PF01171.20 gi|294496034|ref|YP_003542527.1| - 4.4e-14 52.7 0.0 7.4e-14 51.9 0.0 1.3 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|294496034|ref|YP_003542527.1| - 1.5e-06 27.3 0.5 2.1e-06 26.8 0.1 1.5 2 0 0 2 2 2 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|294496034|ref|YP_003542527.1| - 0.0003 20.9 0.0 0.00056 20.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|294496034|ref|YP_003542527.1| - 0.0003 20.0 0.0 0.00042 19.5 0.0 1.2 1 0 0 1 1 1 1 NAD synthase ThiI PF02568.14 gi|294496034|ref|YP_003542527.1| - 0.0018 17.9 0.0 0.0027 17.3 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) zn-ribbon_14 PF16503.5 gi|294496034|ref|YP_003542527.1| - 0.0036 16.8 6.4 0.0036 16.8 6.4 2.8 3 0 0 3 3 3 1 Zinc-ribbon Diphthami_syn_2 PF01902.17 gi|294496034|ref|YP_003542527.1| - 0.01 15.4 0.1 0.016 14.7 0.1 1.4 1 0 0 1 1 1 0 Diphthamide synthase QueC PF06508.13 gi|294496034|ref|YP_003542527.1| - 0.03 13.8 0.0 0.03 13.8 0.0 2.0 2 1 0 2 2 2 0 Queuosine biosynthesis protein QueC RecR PF02132.15 gi|294496034|ref|YP_003542527.1| - 8.8 6.0 15.2 0.39 10.3 6.0 2.8 3 0 0 3 3 3 0 RecR protein TctA PF01970.16 gi|294496035|ref|YP_003542528.1| - 2.8e-75 253.6 32.8 3.3e-75 253.4 32.8 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family CbiA PF01656.23 gi|294496036|ref|YP_003542529.1| - 1.5e-22 80.0 0.0 1.9e-22 79.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|294496036|ref|YP_003542529.1| - 7.4e-12 45.5 0.0 3.6e-11 43.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|294496036|ref|YP_003542529.1| - 1.5e-10 40.8 0.1 1.2e-09 37.8 0.0 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase ParA PF10609.9 gi|294496036|ref|YP_003542529.1| - 5.5e-10 39.1 0.2 9.8e-06 25.2 0.1 3.0 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|294496036|ref|YP_003542529.1| - 1.7e-06 27.7 0.2 6.8e-05 22.4 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|294496036|ref|YP_003542529.1| - 2.8e-06 27.3 0.5 8.8e-05 22.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain CBP_BcsQ PF06564.12 gi|294496036|ref|YP_003542529.1| - 2e-05 24.2 0.0 0.0001 21.9 0.0 1.9 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ NTPase_1 PF03266.15 gi|294496036|ref|YP_003542529.1| - 0.00073 19.5 0.2 0.0015 18.5 0.2 1.5 1 0 0 1 1 1 1 NTPase AAA_18 PF13238.6 gi|294496036|ref|YP_003542529.1| - 0.0063 17.1 0.0 0.011 16.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain CLP1_P PF16575.5 gi|294496036|ref|YP_003542529.1| - 0.01 15.6 0.0 0.16 11.7 0.0 2.3 2 1 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_24 PF13479.6 gi|294496036|ref|YP_003542529.1| - 0.012 15.4 0.0 0.035 13.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|294496036|ref|YP_003542529.1| - 0.013 15.4 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase ABC_tran PF00005.27 gi|294496036|ref|YP_003542529.1| - 0.017 15.7 0.0 0.038 14.5 0.0 1.8 1 1 0 1 1 1 0 ABC transporter NB-ARC PF00931.22 gi|294496036|ref|YP_003542529.1| - 0.018 14.3 0.6 0.059 12.5 0.3 1.9 2 0 0 2 2 2 0 NB-ARC domain ATP-synt_ab PF00006.25 gi|294496036|ref|YP_003542529.1| - 0.018 14.7 1.1 0.044 13.4 1.1 1.6 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.6 gi|294496036|ref|YP_003542529.1| - 0.02 14.6 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|294496036|ref|YP_003542529.1| - 0.026 14.2 0.1 0.045 13.4 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain CTP_synth_N PF06418.14 gi|294496036|ref|YP_003542529.1| - 0.027 13.8 0.1 0.067 12.5 0.1 1.6 1 0 0 1 1 1 0 CTP synthase N-terminus MeaB PF03308.16 gi|294496036|ref|YP_003542529.1| - 0.031 13.3 0.5 0.047 12.7 0.5 1.5 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|294496036|ref|YP_003542529.1| - 0.037 14.4 0.0 0.072 13.5 0.0 1.5 2 0 0 2 2 1 0 AAA ATPase domain MipZ PF09140.11 gi|294496036|ref|YP_003542529.1| - 0.042 13.1 0.1 0.1 11.9 0.1 1.6 1 0 0 1 1 1 0 ATPase MipZ DUF87 PF01935.17 gi|294496036|ref|YP_003542529.1| - 0.051 13.7 0.6 0.12 12.4 0.1 1.8 2 0 0 2 2 2 0 Helicase HerA, central domain NACHT PF05729.12 gi|294496036|ref|YP_003542529.1| - 0.1 12.5 0.1 0.28 11.1 0.1 1.7 2 0 0 2 2 2 0 NACHT domain Cation_efflux PF01545.21 gi|294496037|ref|YP_003542530.1| - 1.1e-45 155.8 8.7 1.4e-45 155.5 8.7 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|294496037|ref|YP_003542530.1| - 1.6e-22 79.4 2.3 2.8e-22 78.7 2.3 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF1686 PF07937.11 gi|294496037|ref|YP_003542530.1| - 0.12 12.2 0.6 5.2 6.9 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1686) DUF3593 PF12159.8 gi|294496037|ref|YP_003542530.1| - 0.26 11.4 4.1 0.36 10.9 2.3 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3593) Chorismate_synt PF01264.21 gi|294496038|ref|YP_003542531.1| - 4.9e-144 479.0 2.2 5.5e-144 478.9 2.2 1.0 1 0 0 1 1 1 1 Chorismate synthase Melittin PF01372.17 gi|294496038|ref|YP_003542531.1| - 0.31 11.1 4.9 17 5.6 0.2 3.5 3 0 0 3 3 3 0 Melittin Aminotran_1_2 PF00155.21 gi|294496039|ref|YP_003542532.1| - 2e-62 211.5 0.0 2.2e-62 211.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|294496039|ref|YP_003542532.1| - 0.0052 15.4 0.0 0.0076 14.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme AAL_decarboxy PF03306.13 gi|294496040|ref|YP_003542533.1| - 6.5e-79 264.3 0.0 9e-79 263.8 0.0 1.1 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase ZnuA PF01297.17 gi|294496041|ref|YP_003542534.1| - 1.2e-63 215.0 0.4 1.3e-63 214.8 0.4 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 gi|294496042|ref|YP_003542535.1| - 7.2e-32 110.8 0.0 1.1e-31 110.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|294496042|ref|YP_003542535.1| - 3.8e-16 59.8 0.1 1.6e-08 34.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|294496042|ref|YP_003542535.1| - 3e-08 33.4 0.0 7.4e-08 32.1 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|294496042|ref|YP_003542535.1| - 4e-05 23.5 0.2 0.0056 16.4 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|294496042|ref|YP_003542535.1| - 0.002 18.0 0.2 0.079 12.9 0.0 2.7 2 1 1 3 3 3 1 RsgA GTPase AAA PF00004.29 gi|294496042|ref|YP_003542535.1| - 0.0021 18.5 0.3 0.46 10.9 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|294496042|ref|YP_003542535.1| - 0.0021 17.7 0.0 0.0041 16.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|294496042|ref|YP_003542535.1| - 0.0025 18.3 0.0 0.0051 17.3 0.0 1.6 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|294496042|ref|YP_003542535.1| - 0.014 15.6 0.1 0.35 11.1 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.6 gi|294496042|ref|YP_003542535.1| - 0.03 14.4 0.4 3.5 7.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|294496042|ref|YP_003542535.1| - 0.034 14.1 0.8 1.6 8.6 0.0 2.2 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|294496042|ref|YP_003542535.1| - 0.061 13.6 0.5 0.43 10.8 0.5 2.2 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|294496042|ref|YP_003542535.1| - 0.07 12.8 0.1 0.2 11.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain Roc PF08477.13 gi|294496042|ref|YP_003542535.1| - 0.1 12.8 0.4 22 5.3 0.0 2.7 2 1 1 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1 PF01926.23 gi|294496042|ref|YP_003542535.1| - 0.11 12.6 0.4 0.44 10.6 0.4 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|294496042|ref|YP_003542535.1| - 0.29 10.3 1.4 2.6 7.2 0.1 2.5 2 1 1 3 3 3 0 NB-ARC domain ABC-3 PF00950.17 gi|294496043|ref|YP_003542536.1| - 3.1e-82 276.0 25.9 3.4e-82 275.8 25.9 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|294496043|ref|YP_003542536.1| - 1.3e-09 37.5 22.4 1.3e-09 37.5 22.4 1.5 1 1 0 1 1 1 1 FecCD transport family DUF2427 PF10348.9 gi|294496043|ref|YP_003542536.1| - 0.12 12.2 0.2 0.12 12.2 0.2 3.3 2 2 0 2 2 2 0 Domain of unknown function (DUF2427) COX14 PF14880.6 gi|294496043|ref|YP_003542536.1| - 2.1 8.2 4.5 1.1 9.1 0.1 2.8 3 0 0 3 3 3 0 Cytochrome oxidase c assembly PAS_3 PF08447.12 gi|294496044|ref|YP_003542537.1| - 9.5e-22 77.1 0.0 2.8e-17 62.8 0.0 2.9 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 gi|294496044|ref|YP_003542537.1| - 1.3e-20 73.5 0.0 2.4e-08 33.9 0.0 3.4 3 1 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|294496044|ref|YP_003542537.1| - 2.6e-14 53.4 0.0 5.5e-05 23.4 0.0 3.2 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|294496044|ref|YP_003542537.1| - 1.2e-12 48.0 0.4 0.00078 19.7 0.0 3.3 3 0 0 3 3 3 3 PAS domain PAS_8 PF13188.7 gi|294496044|ref|YP_003542537.1| - 7.7e-08 32.2 0.0 0.0005 20.0 0.0 2.8 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.7 gi|294496044|ref|YP_003542537.1| - 0.13 12.4 0.0 21 5.3 0.0 3.0 3 1 0 3 3 3 0 PAS fold HATPase_c PF02518.26 gi|294496045|ref|YP_003542538.1| - 1.7e-32 112.2 0.4 5.6e-32 110.6 0.4 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|294496045|ref|YP_003542538.1| - 2.1e-23 82.5 1.2 8.3e-13 48.5 0.2 3.8 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|294496045|ref|YP_003542538.1| - 2.3e-23 82.3 0.0 5.2e-12 45.8 0.0 3.0 3 0 0 3 3 3 2 PAS fold GAF_2 PF13185.6 gi|294496045|ref|YP_003542538.1| - 1.6e-21 77.1 0.0 3e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 gi|294496045|ref|YP_003542538.1| - 1.2e-20 73.8 0.0 4.6e-09 36.5 0.0 3.4 3 0 0 3 3 3 2 PAS fold HisKA PF00512.25 gi|294496045|ref|YP_003542538.1| - 6.6e-18 64.5 0.1 6.6e-18 64.5 0.1 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|294496045|ref|YP_003542538.1| - 5.8e-17 61.3 0.0 1.5e-09 37.7 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|294496045|ref|YP_003542538.1| - 4.5e-06 26.8 0.0 0.002 18.4 0.0 3.4 3 0 0 3 3 3 1 PAS fold HATPase_c_3 PF13589.6 gi|294496045|ref|YP_003542538.1| - 3.3e-05 23.7 0.1 8.6e-05 22.4 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|294496045|ref|YP_003542538.1| - 0.00015 21.7 0.2 0.00055 19.8 0.2 2.0 1 0 0 1 1 1 1 GHKL domain PAS_10 PF13596.6 gi|294496045|ref|YP_003542538.1| - 0.00015 22.3 0.2 0.0011 19.5 0.0 2.6 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.7 gi|294496045|ref|YP_003542538.1| - 0.00045 20.3 2.1 1.8 8.7 0.0 4.1 3 2 0 3 3 3 2 PAS fold HATPase_c_2 PF13581.6 gi|294496045|ref|YP_003542538.1| - 0.016 15.2 0.0 0.09 12.7 0.0 2.2 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain bPH_5 PF10882.8 gi|294496045|ref|YP_003542538.1| - 0.019 15.1 1.9 14 5.8 0.1 3.9 5 0 0 5 5 3 0 Bacterial PH domain GAF PF01590.26 gi|294496045|ref|YP_003542538.1| - 0.081 13.5 0.0 0.17 12.5 0.0 1.5 1 0 0 1 1 1 0 GAF domain LMBR1 PF04791.16 gi|294496045|ref|YP_003542538.1| - 0.094 11.6 1.9 0.18 10.7 1.9 1.4 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF5125 PF17163.4 gi|294496045|ref|YP_003542538.1| - 0.14 12.4 0.1 0.58 10.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF5125) I_LWEQ PF01608.17 gi|294496045|ref|YP_003542538.1| - 0.46 10.7 2.6 0.78 10.0 0.8 2.2 2 0 0 2 2 2 0 I/LWEQ domain Lyase_1 PF00206.20 gi|294496046|ref|YP_003542539.1| - 2.5e-61 207.8 0.0 3.6e-61 207.3 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|294496046|ref|YP_003542539.1| - 2e-15 57.3 0.1 2.5e-14 53.8 0.0 2.6 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal Asparaginase PF00710.20 gi|294496047|ref|YP_003542540.1| - 1.9e-58 197.2 0.8 3.5e-58 196.3 0.8 1.4 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|294496047|ref|YP_003542540.1| - 4.3e-32 110.7 0.6 2.1e-30 105.2 0.0 2.5 3 0 0 3 3 3 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|294496047|ref|YP_003542540.1| - 5.4e-17 60.9 0.2 1.3e-16 59.6 0.2 1.7 1 0 0 1 1 1 1 GatD N-terminal domain Peripla_BP_4 PF13407.6 gi|294496047|ref|YP_003542540.1| - 0.0029 17.2 0.3 0.88 9.1 0.0 2.3 2 0 0 2 2 2 2 Periplasmic binding protein domain BCCT PF02028.17 gi|294496048|ref|YP_003542541.1| - 7e-182 605.2 43.8 8.1e-182 605.0 43.8 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter MtmB PF05369.12 gi|294496049|ref|YP_003542542.1| - 2.5e-137 458.4 2.5 3.2e-137 458.0 2.5 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB Pectate_lyase_2 PF06917.12 gi|294496049|ref|YP_003542542.1| - 0.032 12.8 0.0 0.045 12.3 0.0 1.1 1 0 0 1 1 1 0 Periplasmic pectate lyase CTP_transf_1 PF01148.20 gi|294496050|ref|YP_003542543.1| - 0.00098 19.0 10.1 0.0024 17.7 10.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase family Pilin_N PF07790.11 gi|294496051|ref|YP_003542544.1| - 1.5e-25 89.9 1.4 3.1e-25 88.9 1.4 1.5 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Gp5_C PF06715.12 gi|294496051|ref|YP_003542544.1| - 0.12 12.5 0.2 0.34 11.1 0.2 1.7 1 0 0 1 1 1 0 Gp5 C-terminal repeat (3 copies) UPF0688 PF15772.5 gi|294496051|ref|YP_003542544.1| - 0.12 12.6 0.1 0.14 12.4 0.1 1.2 1 0 0 1 1 1 0 UPF0688 family DUF5371 PF17341.2 gi|294496052|ref|YP_003542545.1| - 8.1e-39 131.7 5.5 9e-39 131.5 5.5 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5371) DDE_Tnp_1 PF01609.21 gi|294496053|ref|YP_003542546.1| - 3.3e-19 69.4 3.3 4.8e-19 68.9 3.3 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|294496053|ref|YP_003542546.1| - 9.5e-05 22.7 1.5 0.00025 21.4 1.5 1.7 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|294496053|ref|YP_003542546.1| - 0.011 15.8 0.1 0.024 14.6 0.1 1.6 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_4 PF13359.6 gi|294496053|ref|YP_003542546.1| - 0.027 14.1 0.4 0.044 13.4 0.4 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease DUF1297 PF06973.12 gi|294496054|ref|YP_003542547.1| - 1.3e-77 259.6 0.0 1.7e-77 259.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|294496054|ref|YP_003542547.1| - 3.9e-45 152.8 0.0 6e-45 152.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) SpoIIM PF01944.17 gi|294496055|ref|YP_003542548.1| - 5.1e-34 117.6 17.0 6.4e-34 117.2 17.0 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M DUF1097 PF06496.11 gi|294496055|ref|YP_003542548.1| - 0.85 9.7 13.8 0.029 14.5 6.8 2.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1097) DUF63 PF01889.17 gi|294496056|ref|YP_003542549.1| - 4.7e-109 364.8 15.8 5.3e-109 364.6 15.8 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Ycf9 PF01737.17 gi|294496056|ref|YP_003542549.1| - 0.039 13.8 0.3 0.039 13.8 0.3 2.9 3 0 0 3 3 3 0 YCF9 Reticulon PF02453.17 gi|294496056|ref|YP_003542549.1| - 3.5 7.6 11.4 0.38 10.7 4.1 3.0 2 1 0 2 2 2 0 Reticulon Fe-ADH_2 PF13685.6 gi|294496057|ref|YP_003542550.1| - 4.1e-75 252.7 6.6 5.4e-75 252.3 6.6 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|294496057|ref|YP_003542550.1| - 7.7e-27 94.1 5.0 4.8e-26 91.4 5.0 1.8 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|294496057|ref|YP_003542550.1| - 2e-07 30.5 0.6 6.5e-07 28.8 0.4 1.9 1 1 1 2 2 2 1 3-dehydroquinate synthase UPF0179 PF03684.13 gi|294496058|ref|YP_003542551.1| - 8e-51 171.6 3.8 9.6e-51 171.4 3.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.6 gi|294496058|ref|YP_003542551.1| - 0.00045 20.4 1.1 0.00083 19.6 1.1 1.5 1 1 0 1 1 1 1 Transposase DDE domain DUF2150 PF09920.9 gi|294496059|ref|YP_003542552.1| - 4.5e-73 245.2 5.1 5.2e-73 245.0 5.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) TBCA PF02970.16 gi|294496059|ref|YP_003542552.1| - 0.099 13.0 0.1 0.29 11.5 0.0 1.8 1 1 1 2 2 2 0 Tubulin binding cofactor A CbiX PF01903.17 gi|294496060|ref|YP_003542553.1| - 7.9e-31 106.6 0.0 9e-31 106.4 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|294496060|ref|YP_003542553.1| - 2.4e-06 27.1 0.0 3.2e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.19 gi|294496060|ref|YP_003542553.1| - 0.0075 15.4 0.0 0.0087 15.2 0.0 1.1 1 0 0 1 1 1 1 Ferrochelatase Mur_ligase_M PF08245.12 gi|294496061|ref|YP_003542554.1| - 0.00067 19.7 4.2 0.0044 17.1 4.2 2.1 1 1 0 1 1 1 1 Mur ligase middle domain HEM4 PF02602.15 gi|294496061|ref|YP_003542554.1| - 0.041 13.2 0.0 0.25 10.7 0.0 2.1 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD TrkA_N PF02254.18 gi|294496061|ref|YP_003542554.1| - 0.16 12.2 1.2 0.85 9.9 0.1 2.5 2 1 0 2 2 2 0 TrkA-N domain Oxidored_nitro PF00148.19 gi|294496062|ref|YP_003542555.1| - 2.9e-19 69.1 0.1 7.8e-19 67.7 0.0 1.5 1 1 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase GvpG PF05120.12 gi|294496062|ref|YP_003542555.1| - 0.023 14.7 0.2 0.052 13.6 0.2 1.6 1 0 0 1 1 1 0 Gas vesicle protein G Fer4_NifH PF00142.18 gi|294496063|ref|YP_003542556.1| - 5.4e-88 295.0 2.6 6.1e-88 294.8 2.6 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|294496063|ref|YP_003542556.1| - 1.6e-09 37.9 0.0 3.3e-09 36.9 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|294496063|ref|YP_003542556.1| - 2e-09 37.3 0.1 5.8e-09 35.8 0.1 1.7 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|294496063|ref|YP_003542556.1| - 1.9e-07 31.2 0.1 8.9e-07 29.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|294496063|ref|YP_003542556.1| - 6.4e-07 28.8 0.3 3.5e-06 26.4 0.0 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_24 PF13479.6 gi|294496063|ref|YP_003542556.1| - 3e-05 23.8 0.0 4.4e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|294496063|ref|YP_003542556.1| - 0.00077 18.5 0.1 0.0013 17.8 0.1 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MipZ PF09140.11 gi|294496063|ref|YP_003542556.1| - 0.001 18.4 0.1 0.033 13.5 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ SRP54 PF00448.22 gi|294496063|ref|YP_003542556.1| - 0.01 15.5 0.1 0.027 14.1 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|294496063|ref|YP_003542556.1| - 0.047 13.3 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|294496063|ref|YP_003542556.1| - 0.055 13.9 0.0 0.1 13.0 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain ATP_bind_1 PF03029.17 gi|294496063|ref|YP_003542556.1| - 0.056 13.2 0.2 2 8.1 0.1 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_7 PF12775.7 gi|294496063|ref|YP_003542556.1| - 0.16 11.4 0.0 0.24 10.9 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region GATase_3 PF07685.14 gi|294496064|ref|YP_003542557.1| - 1.8e-40 138.7 0.1 2.6e-40 138.1 0.1 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|294496064|ref|YP_003542557.1| - 5.1e-19 68.6 0.0 7.7e-19 68.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|294496064|ref|YP_003542557.1| - 3e-18 66.4 0.4 4e-16 59.4 0.4 2.3 1 1 0 1 1 1 1 AAA domain MobB PF03205.14 gi|294496064|ref|YP_003542557.1| - 0.0079 16.1 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B tRNA_int_endo PF01974.17 gi|294496065|ref|YP_003542558.1| - 1.6e-46 156.2 2.2 1.1e-23 83.1 0.3 2.2 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|294496065|ref|YP_003542558.1| - 7e-38 128.1 2.4 1.1e-19 69.9 0.0 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.10 gi|294496065|ref|YP_003542558.1| - 0.025 14.8 0.0 0.055 13.8 0.0 1.5 1 0 0 1 1 1 0 Sen15 protein AI-2E_transport PF01594.16 gi|294496066|ref|YP_003542559.1| - 9.5e-37 126.9 45.7 1.2e-36 126.6 45.7 1.0 1 0 0 1 1 1 1 AI-2E family transporter PHP_C PF13263.6 gi|294496067|ref|YP_003542560.1| - 5.3e-19 67.7 0.0 1.6e-18 66.2 0.0 1.8 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|294496067|ref|YP_003542560.1| - 3.7e-08 33.9 0.0 3.7e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 PHP domain GTP-bdg_N PF13167.6 gi|294496068|ref|YP_003542561.1| - 1.4e-22 80.2 0.0 3.1e-22 79.1 0.0 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|294496068|ref|YP_003542561.1| - 1.3e-18 67.1 0.0 2.7e-18 66.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|294496068|ref|YP_003542561.1| - 3e-14 53.4 2.1 7.8e-14 52.0 2.1 1.8 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region FeoB_N PF02421.18 gi|294496068|ref|YP_003542561.1| - 1.1e-06 28.3 0.0 2.4e-06 27.2 0.0 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|294496068|ref|YP_003542561.1| - 5.6e-06 26.3 0.0 1.3e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain RsgA_GTPase PF03193.16 gi|294496068|ref|YP_003542561.1| - 8.6e-05 22.5 0.1 0.15 12.0 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|294496068|ref|YP_003542561.1| - 0.00012 21.7 0.0 0.026 14.0 0.0 2.6 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain cobW PF02492.19 gi|294496068|ref|YP_003542561.1| - 0.00085 19.0 0.0 0.064 12.8 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MnmE_helical PF12631.7 gi|294496068|ref|YP_003542561.1| - 0.0099 16.1 0.0 0.017 15.3 0.0 1.3 1 0 0 1 1 1 1 MnmE helical domain PduV-EutP PF10662.9 gi|294496068|ref|YP_003542561.1| - 0.041 13.6 0.1 4.3 7.1 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Dynamin_N PF00350.23 gi|294496068|ref|YP_003542561.1| - 0.13 12.3 0.1 0.93 9.5 0.0 2.2 1 1 0 2 2 2 0 Dynamin family AAA_23 PF13476.6 gi|294496068|ref|YP_003542561.1| - 0.2 12.2 1.4 2.1 8.8 0.0 2.3 1 1 1 2 2 2 0 AAA domain YgaB PF14182.6 gi|294496068|ref|YP_003542561.1| - 0.9 10.0 5.6 29 5.1 0.1 3.9 4 0 0 4 4 4 0 YgaB-like protein DUF2209 PF09974.9 gi|294496069|ref|YP_003542562.1| - 3.7e-51 172.5 0.1 4.2e-51 172.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) DDR_swiveling PF18427.1 gi|294496069|ref|YP_003542562.1| - 0.032 14.3 0.0 0.033 14.2 0.0 1.1 1 0 0 1 1 1 0 DD-reactivating factor swiveling domain BTRD1 PF17660.1 gi|294496070|ref|YP_003542563.1| - 1.9 8.4 10.3 1.4 8.8 0.5 3.3 2 1 1 3 3 3 0 Bacterial tandem repeat domain 1 Prismane PF03063.20 gi|294496071|ref|YP_003542564.1| - 8.9e-165 549.2 0.0 1e-164 549.1 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family TM2 PF05154.16 gi|294496072|ref|YP_003542565.1| - 0.00017 21.8 6.4 0.00051 20.3 6.4 1.8 1 1 0 1 1 1 1 TM2 domain OAD_gamma PF04277.13 gi|294496072|ref|YP_003542565.1| - 2.2 8.9 4.6 0.56 10.8 0.7 1.8 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain POTRA_2 PF08479.11 gi|294496073|ref|YP_003542566.1| - 0.075 12.9 0.0 0.086 12.7 0.0 1.1 1 0 0 1 1 1 0 POTRA domain, ShlB-type Rhodanese PF00581.20 gi|294496074|ref|YP_003542567.1| - 2.1e-16 60.3 0.0 3.1e-16 59.8 0.0 1.3 1 1 0 1 1 1 1 Rhodanese-like domain DUF442 PF04273.13 gi|294496074|ref|YP_003542567.1| - 0.027 14.6 0.0 0.037 14.1 0.0 1.3 1 0 0 1 1 1 0 Putative phosphatase (DUF442) SopA_C PF13979.6 gi|294496074|ref|YP_003542567.1| - 0.046 13.5 0.0 0.049 13.4 0.0 1.0 1 0 0 1 1 1 0 SopA-like catalytic domain Pyr_redox_2 PF07992.14 gi|294496075|ref|YP_003542568.1| - 1.2e-16 60.9 0.6 2.6e-07 30.2 0.1 3.2 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|294496075|ref|YP_003542568.1| - 9e-15 54.7 0.6 2.1e-06 27.1 0.1 3.1 3 0 0 3 3 3 2 FAD binding domain GIDA PF01134.22 gi|294496075|ref|YP_003542568.1| - 4.2e-13 49.1 0.4 7.1e-05 22.1 0.0 3.2 3 0 0 3 3 3 3 Glucose inhibited division protein A HI0933_like PF03486.14 gi|294496075|ref|YP_003542568.1| - 6.7e-11 41.5 0.0 1.2e-07 30.8 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|294496075|ref|YP_003542568.1| - 1.1e-07 31.8 0.4 0.00025 20.8 0.1 2.5 2 1 1 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|294496075|ref|YP_003542568.1| - 1.4e-07 31.6 0.0 2e-05 24.7 0.1 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|294496075|ref|YP_003542568.1| - 2e-07 30.6 0.0 3.4e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|294496075|ref|YP_003542568.1| - 4.5e-05 22.9 0.2 8.9e-05 21.9 0.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|294496075|ref|YP_003542568.1| - 8e-05 22.0 0.2 0.00032 20.0 0.1 1.9 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.27 gi|294496075|ref|YP_003542568.1| - 0.00012 22.5 0.0 0.24 12.0 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|294496075|ref|YP_003542568.1| - 0.00012 21.2 0.0 0.0003 20.0 0.1 1.5 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|294496075|ref|YP_003542568.1| - 0.011 15.1 0.3 0.057 12.8 0.2 1.9 2 0 0 2 2 2 0 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|294496075|ref|YP_003542568.1| - 0.021 14.1 0.0 0.074 12.3 0.0 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|294496075|ref|YP_003542568.1| - 0.029 14.6 0.0 0.071 13.4 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_9 PF13454.6 gi|294496075|ref|YP_003542568.1| - 0.078 13.0 0.0 0.21 11.6 0.0 1.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding GDI PF00996.18 gi|294496075|ref|YP_003542568.1| - 0.17 10.4 0.1 0.57 8.6 0.0 1.8 2 0 0 2 2 2 0 GDP dissociation inhibitor HxlR PF01638.17 gi|294496076|ref|YP_003542569.1| - 2.4e-22 78.6 0.1 3e-22 78.2 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix DUF505 PF04458.12 gi|294496076|ref|YP_003542569.1| - 0.0013 17.2 0.1 0.0014 17.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) PadR PF03551.14 gi|294496076|ref|YP_003542569.1| - 0.0031 17.4 0.0 0.0046 16.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF2513 PF10711.9 gi|294496076|ref|YP_003542569.1| - 0.0064 16.8 0.1 0.009 16.3 0.1 1.1 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) DUF4423 PF14394.6 gi|294496076|ref|YP_003542569.1| - 0.012 15.4 0.0 0.015 15.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_20 PF12840.7 gi|294496076|ref|YP_003542569.1| - 0.021 14.9 0.0 0.033 14.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF829 PF05705.14 gi|294496076|ref|YP_003542569.1| - 0.035 14.0 0.0 0.038 13.9 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF829) MarR_2 PF12802.7 gi|294496076|ref|YP_003542569.1| - 0.041 13.8 0.0 0.06 13.2 0.0 1.3 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|294496076|ref|YP_003542569.1| - 0.082 12.9 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 MarR family Replic_Relax PF13814.6 gi|294496076|ref|YP_003542569.1| - 0.12 12.5 0.0 0.13 12.3 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Prismane PF03063.20 gi|294496077|ref|YP_003542570.1| - 1.6e-174 581.4 0.0 1.9e-174 581.2 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Thymopoietin PF08198.11 gi|294496077|ref|YP_003542570.1| - 0.067 12.8 0.1 0.35 10.5 0.1 2.1 2 0 0 2 2 2 0 Thymopoietin protein Cupin_2 PF07883.11 gi|294496078|ref|YP_003542571.1| - 1.4e-13 50.4 0.0 1.8e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|294496078|ref|YP_003542571.1| - 0.0025 17.7 0.1 0.0029 17.5 0.1 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.19 gi|294496078|ref|YP_003542571.1| - 0.0051 16.7 0.0 0.0065 16.4 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Pirin_C PF05726.13 gi|294496078|ref|YP_003542571.1| - 0.031 14.6 0.0 0.038 14.3 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain GPDPase_memb PF10110.9 gi|294496080|ref|YP_003542573.1| - 6.5e-08 31.7 15.8 5.6e-07 28.6 8.8 2.2 1 1 1 2 2 2 2 Membrane domain of glycerophosphoryl diester phosphodiesterase UPF0259 PF06790.11 gi|294496080|ref|YP_003542573.1| - 1.6e-05 24.8 19.2 0.00044 20.1 14.0 2.1 1 1 0 2 2 2 2 Uncharacterised protein family (UPF0259) DUF624 PF04854.14 gi|294496080|ref|YP_003542573.1| - 0.00058 19.9 10.3 0.039 14.0 0.5 3.4 1 1 2 3 3 3 2 Protein of unknown function, DUF624 Choline_transpo PF04515.12 gi|294496080|ref|YP_003542573.1| - 0.13 11.5 12.8 0.54 9.4 8.3 2.1 1 1 1 2 2 2 0 Plasma-membrane choline transporter DUF872 PF05915.12 gi|294496080|ref|YP_003542573.1| - 1.2 9.3 5.8 4.1 7.6 1.7 2.6 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) PKD_channel PF08016.12 gi|294496080|ref|YP_003542573.1| - 5.1 5.7 8.8 1.9 7.0 2.9 2.1 2 0 0 2 2 2 0 Polycystin cation channel DUF846 PF05832.12 gi|294496080|ref|YP_003542573.1| - 7.2 6.7 13.0 3.8 7.6 1.9 2.8 3 0 0 3 3 3 0 Eukaryotic protein of unknown function (DUF846) PepSY_TM_like_2 PF16357.5 gi|294496082|ref|YP_003542575.1| - 0.094 12.7 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative PepSY_TM-like Pilin_N PF07790.11 gi|294496084|ref|YP_003542577.1| - 0.006 17.5 0.5 0.012 16.5 0.5 1.5 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal RdRP_3 PF00998.23 gi|294496084|ref|YP_003542577.1| - 0.11 11.2 0.1 0.13 10.9 0.1 1.1 1 0 0 1 1 1 0 Viral RNA dependent RNA polymerase Pilin_N PF07790.11 gi|294496085|ref|YP_003542578.1| - 0.018 16.0 5.5 0.018 16.0 5.5 2.7 3 1 0 3 3 3 0 Archaeal Type IV pilin, N-terminal MG4 PF17789.1 gi|294496086|ref|YP_003542579.1| - 0.0024 18.0 0.1 0.029 14.5 0.1 2.6 2 0 0 2 2 2 1 Macroglobulin domain MG4 Pilin_N PF07790.11 gi|294496086|ref|YP_003542579.1| - 0.0027 18.6 5.0 0.0038 18.1 1.9 2.9 2 1 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Acetyltransf_1 PF00583.25 gi|294496088|ref|YP_003542581.1| - 3.2e-07 30.6 0.0 6.3e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|294496088|ref|YP_003542581.1| - 3.3e-07 30.3 0.0 7.6e-07 29.1 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|294496088|ref|YP_003542581.1| - 1.1e-06 28.7 0.1 2.6e-06 27.5 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|294496088|ref|YP_003542581.1| - 0.00022 21.6 0.0 0.00043 20.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|294496088|ref|YP_003542581.1| - 0.00028 20.8 0.0 0.00064 19.6 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|294496088|ref|YP_003542581.1| - 0.0023 18.1 0.0 0.0084 16.3 0.0 1.9 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Gly_acyl_tr_C PF08444.10 gi|294496088|ref|YP_003542581.1| - 0.011 16.0 0.0 0.024 14.8 0.0 1.6 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region LAM_C PF12544.8 gi|294496089|ref|YP_003542582.1| - 6.4e-45 152.4 0.0 1e-44 151.8 0.0 1.3 1 0 0 1 1 1 1 Lysine-2,3-aminomutase Radical_SAM PF04055.21 gi|294496089|ref|YP_003542582.1| - 4.6e-13 49.9 0.0 1.5e-12 48.2 0.0 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|294496089|ref|YP_003542582.1| - 0.0023 18.2 0.0 0.014 15.7 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|294496089|ref|YP_003542582.1| - 0.0033 17.5 0.1 0.01 16.0 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF3996 PF13161.6 gi|294496089|ref|YP_003542582.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3996) TetR_C_21 PF17926.1 gi|294496091|ref|YP_003542584.1| - 0.15 12.2 0.1 0.18 11.9 0.1 1.2 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain ATP-synt_D PF01813.17 gi|294496092|ref|YP_003542585.1| - 8.2e-57 192.2 5.9 9.2e-57 192.0 5.9 1.0 1 0 0 1 1 1 1 ATP synthase subunit D ATP-synt_ab PF00006.25 gi|294496093|ref|YP_003542586.1| - 1.1e-65 221.3 0.0 1.4e-65 221.0 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|294496093|ref|YP_003542586.1| - 1.8e-09 37.9 1.0 1.8e-09 37.9 1.0 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|294496093|ref|YP_003542586.1| - 0.00019 21.5 0.3 0.00076 19.6 0.2 2.1 3 0 0 3 3 3 1 HAS barrel domain Phage-MuB_C PF09077.11 gi|294496093|ref|YP_003542586.1| - 0.024 14.5 0.1 0.31 10.9 0.0 2.2 2 0 0 2 2 2 0 Mu B transposition protein, C terminal ATP-synt_ab PF00006.25 gi|294496094|ref|YP_003542587.1| - 4.3e-95 317.4 0.0 1.3e-94 315.8 0.0 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|294496094|ref|YP_003542587.1| - 9.9e-44 148.1 0.1 2e-43 147.1 0.1 1.5 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|294496094|ref|YP_003542587.1| - 3.9e-17 62.5 2.4 1.5e-16 60.7 2.4 2.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|294496094|ref|YP_003542587.1| - 0.024 14.9 0.0 0.055 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Peptidase_M23 PF01551.22 gi|294496094|ref|YP_003542587.1| - 0.024 14.8 0.4 3.8 7.8 0.0 2.6 2 0 0 2 2 2 0 Peptidase family M23 RnfC_N PF13375.6 gi|294496094|ref|YP_003542587.1| - 0.076 13.0 0.8 0.67 9.9 0.1 2.3 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain ATP-synt_F PF01990.17 gi|294496095|ref|YP_003542588.1| - 4.4e-16 59.0 0.0 4.9e-16 58.8 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit YcgL PF05166.13 gi|294496095|ref|YP_003542588.1| - 0.12 12.7 0.0 1.8 9.0 0.0 2.1 2 0 0 2 2 2 0 YcgL domain vATP-synt_AC39 PF01992.16 gi|294496096|ref|YP_003542589.1| - 6.7e-76 256.0 8.4 7.6e-76 255.8 8.4 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit vATP-synt_E PF01991.18 gi|294496097|ref|YP_003542590.1| - 7.1e-26 90.9 19.0 2.1e-24 86.0 19.0 2.0 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DivIVA PF05103.13 gi|294496097|ref|YP_003542590.1| - 0.00064 19.8 8.7 0.00064 19.8 8.7 2.1 1 1 1 2 2 2 1 DivIVA protein ATP-synt_B PF00430.18 gi|294496097|ref|YP_003542590.1| - 0.0011 19.1 14.7 0.0011 19.1 14.7 1.5 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) DUF2968 PF11180.8 gi|294496097|ref|YP_003542590.1| - 0.0028 17.3 3.9 0.0028 17.3 3.9 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2968) DUF3552 PF12072.8 gi|294496097|ref|YP_003542590.1| - 0.0035 16.8 16.0 0.034 13.6 15.4 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF3552) V-ATPase_G_2 PF16999.5 gi|294496097|ref|YP_003542590.1| - 0.0051 17.2 11.1 0.013 15.9 11.1 1.7 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DUF4972 PF16342.5 gi|294496097|ref|YP_003542590.1| - 3.4 7.4 7.7 2 8.1 1.7 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4972) D5_N PF08706.11 gi|294496097|ref|YP_003542590.1| - 4.4 7.6 6.7 2.9 8.2 3.5 1.8 1 1 1 2 2 2 0 D5 N terminal like ATP-synt_C PF00137.21 gi|294496098|ref|YP_003542591.1| - 2.2e-17 63.1 12.3 2.9e-17 62.8 12.3 1.1 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.19 gi|294496099|ref|YP_003542592.1| - 3.6e-26 91.4 7.6 9.3e-15 53.6 0.0 3.9 4 0 0 4 4 4 2 V-type ATPase 116kDa subunit family Phage_GP20 PF06810.11 gi|294496099|ref|YP_003542592.1| - 0.0011 18.8 1.2 0.31 10.8 0.3 2.4 2 0 0 2 2 2 2 Phage minor structural protein GP20 Prefoldin_2 PF01920.20 gi|294496099|ref|YP_003542592.1| - 0.0023 17.8 10.0 0.13 12.2 0.2 2.7 3 0 0 3 3 3 2 Prefoldin subunit Spc7 PF08317.11 gi|294496099|ref|YP_003542592.1| - 0.036 12.9 2.6 0.88 8.4 0.3 2.2 2 0 0 2 2 2 0 Spc7 kinetochore protein TPR_MLP1_2 PF07926.12 gi|294496099|ref|YP_003542592.1| - 0.042 13.9 4.2 3.4 7.7 0.8 2.2 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Vps51 PF08700.11 gi|294496099|ref|YP_003542592.1| - 0.097 12.8 3.2 0.1 12.7 0.3 2.4 2 0 0 2 2 2 0 Vps51/Vps67 APG6_N PF17675.1 gi|294496099|ref|YP_003542592.1| - 0.12 12.9 2.7 3.9 8.0 0.3 2.3 2 0 0 2 2 2 0 Apg6 coiled-coil region Spc24 PF08286.11 gi|294496099|ref|YP_003542592.1| - 0.18 12.1 1.6 8.2 6.7 0.1 2.6 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 TMF_DNA_bd PF12329.8 gi|294496099|ref|YP_003542592.1| - 0.19 11.8 10.3 1.4 8.9 0.6 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF5082 PF16888.5 gi|294496099|ref|YP_003542592.1| - 0.23 11.7 5.5 6 7.2 0.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) Prefoldin PF02996.17 gi|294496099|ref|YP_003542592.1| - 0.4 10.6 3.0 16 5.4 0.2 2.3 2 0 0 2 2 2 0 Prefoldin subunit ABC_tran_CTD PF16326.5 gi|294496099|ref|YP_003542592.1| - 0.55 10.5 7.2 8.8 6.7 1.1 2.7 2 0 0 2 2 2 0 ABC transporter C-terminal domain DUF724 PF05266.14 gi|294496099|ref|YP_003542592.1| - 0.59 9.9 3.4 4.5 7.1 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF724) DivIC PF04977.15 gi|294496099|ref|YP_003542592.1| - 0.88 9.4 5.3 3.5 7.5 1.6 2.6 2 0 0 2 2 2 0 Septum formation initiator DUF1640 PF07798.11 gi|294496099|ref|YP_003542592.1| - 1.4 8.9 4.8 0.18 11.8 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1640) DUF4164 PF13747.6 gi|294496099|ref|YP_003542592.1| - 1.4 9.2 4.9 2.7 8.3 1.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) FlaC_arch PF05377.11 gi|294496099|ref|YP_003542592.1| - 5.1 7.6 6.7 12 6.4 0.5 2.6 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) V-ATPase_G_2 PF16999.5 gi|294496100|ref|YP_003542593.1| - 4.2e-09 36.8 21.9 4.8e-09 36.6 21.9 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|294496100|ref|YP_003542593.1| - 6.6e-08 32.7 25.2 1.1e-06 28.8 19.2 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) Apolipoprotein PF01442.18 gi|294496100|ref|YP_003542593.1| - 0.0044 16.9 14.0 0.005 16.7 14.0 1.0 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain V-ATPase_G PF03179.15 gi|294496100|ref|YP_003542593.1| - 0.0049 17.4 19.9 0.0061 17.1 19.9 1.1 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit Ribosomal_S20p PF01649.18 gi|294496100|ref|YP_003542593.1| - 0.012 16.3 3.2 0.012 16.3 3.2 2.2 1 1 1 2 2 2 0 Ribosomal protein S20 HOIP-UBA PF16678.5 gi|294496100|ref|YP_003542593.1| - 0.041 13.9 7.8 0.06 13.4 7.8 1.3 1 0 0 1 1 1 0 HOIP UBA domain pair DUF4633 PF15464.6 gi|294496100|ref|YP_003542593.1| - 0.09 12.9 2.0 0.28 11.3 0.3 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4633) ApoLp-III PF07464.11 gi|294496100|ref|YP_003542593.1| - 0.16 12.1 11.8 3.9 7.6 11.8 2.0 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) AAA-ATPase_like PF09820.9 gi|294496100|ref|YP_003542593.1| - 0.23 10.8 2.2 0.26 10.7 2.2 1.3 1 1 0 1 1 1 0 Predicted AAA-ATPase ATG_C PF09333.11 gi|294496100|ref|YP_003542593.1| - 0.28 11.6 4.9 5 7.5 0.6 2.1 1 1 1 2 2 2 0 Autophagy-related protein C terminal domain DivIVA PF05103.13 gi|294496100|ref|YP_003542593.1| - 0.46 10.6 19.4 0.85 9.7 3.8 2.2 1 1 1 2 2 2 0 DivIVA protein GrpE PF01025.19 gi|294496100|ref|YP_003542593.1| - 0.83 9.3 17.4 30 4.2 17.4 2.0 1 1 0 1 1 1 0 GrpE DUF3552 PF12072.8 gi|294496100|ref|YP_003542593.1| - 0.88 9.0 23.3 0.13 11.7 16.0 2.5 1 1 2 3 3 3 0 Domain of unknown function (DUF3552) RRF PF01765.19 gi|294496100|ref|YP_003542593.1| - 1.2 9.0 15.0 1.8 8.5 15.0 1.4 1 1 0 1 1 1 0 Ribosome recycling factor OmpH PF03938.14 gi|294496100|ref|YP_003542593.1| - 1.3 9.3 15.9 2 8.8 15.9 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Borrelia_P83 PF05262.11 gi|294496100|ref|YP_003542593.1| - 3.2 6.1 17.3 3.8 5.9 17.3 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein XRN_M PF17846.1 gi|294496100|ref|YP_003542593.1| - 4.8 6.0 8.0 5.6 5.8 8.0 1.0 1 0 0 1 1 1 0 Xrn1 helical domain Remorin_C PF03763.13 gi|294496100|ref|YP_003542593.1| - 6.1 6.8 21.1 13 5.8 19.4 1.8 1 1 1 2 2 2 0 Remorin, C-terminal region DUF883 PF05957.13 gi|294496100|ref|YP_003542593.1| - 6.6 7.4 12.5 14 6.3 1.4 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) RNase_J_C PF17770.1 gi|294496100|ref|YP_003542593.1| - 8.2 7.6 10.3 20 6.3 0.2 2.8 1 1 2 3 3 3 0 Ribonuclease J C-terminal domain Asp-B-Hydro_N PF05279.11 gi|294496100|ref|YP_003542593.1| - 8.4 6.4 16.6 9.7 6.2 16.6 1.0 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region Orthopox_B11R PF07033.11 gi|294496100|ref|YP_003542593.1| - 9.8 6.1 9.5 6.4 6.6 0.6 2.5 1 1 1 2 2 2 0 Orthopoxvirus B11R protein Radical_SAM PF04055.21 gi|294496101|ref|YP_003542594.1| - 4e-14 53.3 0.1 8.1e-14 52.3 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|294496101|ref|YP_003542594.1| - 4.2e-10 40.0 0.1 1.1e-09 38.7 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|294496101|ref|YP_003542594.1| - 0.00034 20.9 0.0 0.0007 19.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain polyprenyl_synt PF00348.17 gi|294496102|ref|YP_003542595.1| - 1e-49 168.9 0.2 1.3e-49 168.6 0.2 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase CcmE PF03100.15 gi|294496103|ref|YP_003542596.1| - 1.3e-16 60.8 0.0 1.5e-16 60.5 0.0 1.0 1 0 0 1 1 1 1 CcmE Radical_SAM PF04055.21 gi|294496104|ref|YP_003542597.1| - 3e-19 70.0 0.8 1.6e-18 67.6 0.0 2.5 1 1 2 3 3 3 1 Radical SAM superfamily SPASM PF13186.6 gi|294496104|ref|YP_003542597.1| - 1.2e-09 38.6 2.7 2.2e-09 37.7 2.7 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|294496104|ref|YP_003542597.1| - 2.5e-08 34.3 0.0 5e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|294496104|ref|YP_003542597.1| - 2.1e-07 31.1 0.0 5.1e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain AsnC_trans_reg2 PF17805.1 gi|294496105|ref|YP_003542598.1| - 1.6e-23 82.6 0.0 3.2e-23 81.7 0.0 1.5 2 0 0 2 2 2 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|294496105|ref|YP_003542598.1| - 7.4e-09 35.3 0.4 2.3e-08 33.7 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|294496105|ref|YP_003542598.1| - 3.1e-05 23.5 1.9 0.00053 19.5 1.9 2.4 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|294496105|ref|YP_003542598.1| - 0.0035 17.4 0.0 0.0062 16.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|294496105|ref|YP_003542598.1| - 0.0076 16.2 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Sulfolobus_pRN PF05584.11 gi|294496105|ref|YP_003542598.1| - 0.077 13.0 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein PKD PF00801.20 gi|294496105|ref|YP_003542598.1| - 0.093 12.6 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 PKD domain IF2_N PF04760.15 gi|294496105|ref|YP_003542598.1| - 0.094 12.6 0.1 0.49 10.2 0.1 2.2 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Rrf2 PF02082.20 gi|294496105|ref|YP_003542598.1| - 0.14 12.5 0.0 0.8 10.1 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator AsnC_trans_reg2 PF17805.1 gi|294496106|ref|YP_003542599.1| - 1.1e-31 108.7 0.1 2.7e-31 107.6 0.0 1.6 2 0 0 2 2 2 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|294496106|ref|YP_003542599.1| - 3.4e-06 26.8 0.0 6.5e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|294496106|ref|YP_003542599.1| - 0.00035 20.1 0.3 0.00093 18.7 0.3 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|294496106|ref|YP_003542599.1| - 0.0069 15.9 0.1 0.16 11.5 0.0 2.3 1 1 1 2 2 2 1 Sigma-70, region 4 Aldo_ket_red PF00248.21 gi|294496106|ref|YP_003542599.1| - 0.021 14.0 0.0 0.055 12.7 0.0 1.6 2 0 0 2 2 2 0 Aldo/keto reductase family MarR_2 PF12802.7 gi|294496106|ref|YP_003542599.1| - 0.022 14.6 0.0 0.035 14.0 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|294496106|ref|YP_003542599.1| - 0.025 14.6 0.0 0.05 13.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|294496106|ref|YP_003542599.1| - 0.052 13.7 0.0 0.094 12.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HEPN PF05168.14 gi|294496106|ref|YP_003542599.1| - 0.061 13.5 0.1 0.38 10.9 0.0 1.9 1 1 1 2 2 2 0 HEPN domain HTH_Crp_2 PF13545.6 gi|294496106|ref|YP_003542599.1| - 0.14 12.1 0.3 0.26 11.3 0.3 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|294496106|ref|YP_003542599.1| - 0.19 11.2 0.0 0.33 10.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 NAD_binding_7 PF13241.6 gi|294496107|ref|YP_003542600.1| - 3e-20 72.6 0.0 1.1e-18 67.6 0.0 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|294496107|ref|YP_003542600.1| - 0.0012 18.2 0.0 0.0036 16.7 0.0 1.9 2 0 0 2 2 2 1 Sirohaem biosynthesis protein central CysG_dimeriser PF10414.9 gi|294496107|ref|YP_003542600.1| - 0.015 15.0 0.5 0.036 13.8 0.5 1.7 1 1 0 1 1 1 0 Sirohaem synthase dimerisation region 2-Hacid_dh_C PF02826.19 gi|294496107|ref|YP_003542600.1| - 0.12 11.7 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|294496107|ref|YP_003542600.1| - 0.15 12.9 0.0 0.26 12.1 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Shikimate_DH PF01488.20 gi|294496108|ref|YP_003542601.1| - 7.5e-38 129.7 1.5 2.8e-37 127.9 0.2 2.2 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|294496108|ref|YP_003542601.1| - 3.7e-35 120.8 0.2 8e-35 119.7 0.2 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|294496108|ref|YP_003542601.1| - 2.8e-18 66.1 0.9 5.9e-18 65.1 0.2 2.0 2 0 0 2 2 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|294496108|ref|YP_003542601.1| - 1.1e-07 32.3 0.1 8e-07 29.6 0.0 2.5 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|294496108|ref|YP_003542601.1| - 6.3e-07 28.9 0.0 1.1e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glu_dehyd_C PF16912.5 gi|294496108|ref|YP_003542601.1| - 8.5e-06 25.4 0.3 4e-05 23.2 0.2 2.0 2 0 0 2 2 2 1 Glucose dehydrogenase C-terminus NAD_binding_2 PF03446.15 gi|294496108|ref|YP_003542601.1| - 8.3e-05 22.8 0.0 0.00021 21.5 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|294496108|ref|YP_003542601.1| - 0.00073 19.8 0.0 0.0023 18.2 0.0 1.9 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain THF_DHG_CYH_C PF02882.19 gi|294496108|ref|YP_003542601.1| - 0.0012 18.2 0.4 2.5 7.4 0.0 3.3 4 0 0 4 4 4 2 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GFO_IDH_MocA PF01408.22 gi|294496108|ref|YP_003542601.1| - 0.0015 19.4 0.1 0.005 17.7 0.1 2.0 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_7 PF13241.6 gi|294496108|ref|YP_003542601.1| - 0.0017 18.8 0.1 0.005 17.3 0.0 1.9 2 0 0 2 2 2 1 Putative NAD(P)-binding Oxidored_nitro PF00148.19 gi|294496108|ref|YP_003542601.1| - 0.0085 14.9 0.1 0.013 14.2 0.1 1.3 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase OCD_Mu_crystall PF02423.15 gi|294496108|ref|YP_003542601.1| - 0.012 14.6 0.1 0.02 13.8 0.1 1.3 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family IlvN PF07991.12 gi|294496108|ref|YP_003542601.1| - 0.022 14.3 0.0 0.074 12.6 0.0 1.8 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_10 PF13460.6 gi|294496108|ref|YP_003542601.1| - 0.069 13.0 0.1 0.16 11.9 0.1 1.6 1 0 0 1 1 1 0 NAD(P)H-binding ALAD PF00490.21 gi|294496109|ref|YP_003542602.1| - 7.2e-146 485.4 0.3 8.1e-146 485.2 0.3 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Aminotran_3 PF00202.21 gi|294496110|ref|YP_003542603.1| - 3.1e-73 246.8 0.0 3.6e-73 246.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|294496110|ref|YP_003542603.1| - 0.0035 16.6 0.0 0.0052 16.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Porphobil_deam PF01379.20 gi|294496111|ref|YP_003542604.1| - 4.2e-70 235.4 0.0 5.7e-70 235.0 0.0 1.2 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|294496111|ref|YP_003542604.1| - 5.4e-12 45.9 0.0 1.3e-11 44.7 0.0 1.6 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain DHO_dh PF01180.21 gi|294496112|ref|YP_003542605.1| - 4.5e-66 223.0 0.9 5.1e-66 222.9 0.9 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|294496112|ref|YP_003542605.1| - 4.6e-13 49.0 0.1 4.2e-08 32.6 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|294496112|ref|YP_003542605.1| - 7.3e-05 22.3 0.2 0.00047 19.7 0.0 2.1 2 0 0 2 2 2 1 Histidine biosynthesis protein NMO PF03060.15 gi|294496112|ref|YP_003542605.1| - 0.00022 20.8 2.8 0.00022 20.8 2.8 2.1 1 1 1 2 2 2 1 Nitronate monooxygenase NanE PF04131.14 gi|294496112|ref|YP_003542605.1| - 0.0052 16.0 0.9 0.018 14.2 0.9 1.8 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase DUF561 PF04481.12 gi|294496112|ref|YP_003542605.1| - 0.012 14.8 2.2 0.017 14.3 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF561) G3P_antiterm PF04309.12 gi|294496112|ref|YP_003542605.1| - 0.016 14.7 1.9 2.8 7.3 0.1 3.2 4 0 0 4 4 4 0 Glycerol-3-phosphate responsive antiterminator ThiG PF05690.14 gi|294496112|ref|YP_003542605.1| - 0.084 12.2 0.1 0.084 12.2 0.1 1.9 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG IMPDH PF00478.25 gi|294496112|ref|YP_003542605.1| - 0.18 10.8 7.7 0.014 14.4 2.4 1.8 2 1 1 3 3 3 0 IMP dehydrogenase / GMP reductase domain DHODB_Fe-S_bind PF10418.9 gi|294496113|ref|YP_003542606.1| - 5.1e-10 39.0 6.9 5.1e-10 39.0 6.9 2.3 3 0 0 3 3 3 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|294496113|ref|YP_003542606.1| - 4.8e-06 27.2 0.1 0.00016 22.3 0.1 2.5 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|294496113|ref|YP_003542606.1| - 0.0043 17.4 0.1 0.048 14.0 0.1 2.2 1 1 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 gi|294496113|ref|YP_003542606.1| - 0.0088 16.2 0.0 0.45 10.6 0.0 2.6 3 0 0 3 3 3 1 Ferric reductase NAD binding domain Fer2_3 PF13085.6 gi|294496113|ref|YP_003542606.1| - 0.14 12.2 0.4 0.23 11.5 0.4 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain FAA_hydrolase PF01557.18 gi|294496115|ref|YP_003542608.1| - 4.1e-65 219.5 0.0 4.7e-65 219.3 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family TrmB PF01978.19 gi|294496116|ref|YP_003542609.1| - 0.011 15.6 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|294496116|ref|YP_003542609.1| - 0.018 14.6 0.5 0.056 13.0 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|294496116|ref|YP_003542609.1| - 0.036 13.9 0.2 0.14 12.1 0.1 1.9 1 1 1 2 2 2 0 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|294496116|ref|YP_003542609.1| - 0.049 13.6 0.1 0.15 12.0 0.0 1.9 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain RNA_pol_Rpc34 PF05158.12 gi|294496116|ref|YP_003542609.1| - 0.15 11.5 0.1 0.25 10.7 0.0 1.4 2 0 0 2 2 2 0 RNA polymerase Rpc34 subunit tRNA-synt_1c PF00749.21 gi|294496117|ref|YP_003542610.1| - 1.2e-64 218.2 0.0 1.6e-64 217.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|294496117|ref|YP_003542610.1| - 1.8e-25 89.8 0.0 3.4e-25 88.9 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Ribosomal_S3Ae PF01015.18 gi|294496118|ref|YP_003542611.1| - 1.8e-66 223.6 7.2 2.2e-66 223.3 7.2 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family PNPase PF03726.14 gi|294496118|ref|YP_003542611.1| - 0.88 10.1 5.7 12 6.5 0.5 3.0 1 1 1 3 3 3 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain tRNA_bind_4 PF18490.1 gi|294496119|ref|YP_003542612.1| - 1.1e-56 191.1 0.0 1.7e-56 190.5 0.0 1.3 1 0 0 1 1 1 1 tRNA-binding domain tRNA-synt_2b PF00587.25 gi|294496119|ref|YP_003542612.1| - 1.1e-06 28.8 0.0 2.8e-06 27.4 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) UDG PF03167.19 gi|294496120|ref|YP_003542613.1| - 2.8e-38 131.3 0.0 3.9e-38 130.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DHHA1 PF02272.19 gi|294496122|ref|YP_003542615.1| - 6.8e-17 62.2 0.8 6.8e-17 62.2 0.8 1.7 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|294496122|ref|YP_003542615.1| - 5.5e-06 26.6 0.9 1.2e-05 25.5 0.9 1.6 1 0 0 1 1 1 1 DHH family LPD14 PF18827.1 gi|294496122|ref|YP_003542615.1| - 0.091 13.0 0.0 0.2 11.9 0.0 1.6 1 0 0 1 1 1 0 Large polyvalent protein-associated domain 14 Ribosomal_S13_N PF08069.12 gi|294496123|ref|YP_003542616.1| - 1.5e-23 82.6 0.1 3.6e-23 81.4 0.1 1.7 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|294496123|ref|YP_003542616.1| - 2.8e-15 56.3 0.1 4e-15 55.8 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 Pesticin PF16754.5 gi|294496123|ref|YP_003542616.1| - 0.0093 15.9 0.0 0.014 15.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial toxin homologue of phage lysozyme, C-term Methyltransf_25 PF13649.6 gi|294496124|ref|YP_003542617.1| - 4.2e-16 59.4 0.0 6.6e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|294496124|ref|YP_003542617.1| - 5e-15 55.9 0.0 7.3e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|294496124|ref|YP_003542617.1| - 2.1e-10 40.6 0.0 2.6e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|294496124|ref|YP_003542617.1| - 1.8e-09 37.3 0.0 2.6e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.6 gi|294496124|ref|YP_003542617.1| - 1.8e-07 31.1 0.0 2.4e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|294496124|ref|YP_003542617.1| - 1.7e-05 25.5 0.0 3.3e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|294496124|ref|YP_003542617.1| - 0.00048 19.5 0.0 0.00068 19.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family DUF938 PF06080.12 gi|294496124|ref|YP_003542617.1| - 0.0011 18.8 0.0 0.0015 18.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_15 PF09445.10 gi|294496124|ref|YP_003542617.1| - 0.0032 17.1 0.0 0.0036 16.9 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_8 PF05148.15 gi|294496124|ref|YP_003542617.1| - 0.0059 16.5 0.0 0.016 15.0 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase URO-D PF01208.17 gi|294496125|ref|YP_003542618.1| - 3.4e-80 269.8 0.0 3.9e-80 269.6 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) URO-D PF01208.17 gi|294496127|ref|YP_003542620.1| - 1.4e-68 231.6 0.0 1.7e-68 231.4 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Phosphorylase PF00343.20 gi|294496127|ref|YP_003542620.1| - 0.055 11.8 0.0 0.073 11.3 0.0 1.1 1 0 0 1 1 1 0 Carbohydrate phosphorylase Cpn60_TCP1 PF00118.24 gi|294496128|ref|YP_003542621.1| - 1.3e-113 380.3 9.2 1.5e-113 380.1 9.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family eRF1_3 PF03465.15 gi|294496128|ref|YP_003542621.1| - 0.066 13.7 0.8 0.79 10.2 0.8 2.5 1 1 0 1 1 1 0 eRF1 domain 3 AvrM-A PF18241.1 gi|294496128|ref|YP_003542621.1| - 0.32 11.4 3.7 0.23 11.8 0.6 2.4 3 0 0 3 3 3 0 Flax-rust effector AvrM-A Hydantoinase_A PF01968.18 gi|294496129|ref|YP_003542622.1| - 4.2e-32 111.6 4.4 1.3e-30 106.7 0.1 2.8 3 0 0 3 3 3 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|294496129|ref|YP_003542622.1| - 6.8e-29 100.8 4.7 7.2e-16 58.4 0.2 4.2 4 1 1 5 5 5 3 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|294496129|ref|YP_003542622.1| - 4.5e-05 22.2 2.2 0.04 12.5 0.1 2.2 2 0 0 2 2 2 2 MutL protein StbA PF06406.11 gi|294496129|ref|YP_003542622.1| - 0.0027 17.0 0.2 0.0061 15.8 0.2 1.5 1 0 0 1 1 1 1 StbA protein URO-D PF01208.17 gi|294496130|ref|YP_003542623.1| - 1.2e-61 208.8 0.2 2.5e-61 207.7 0.0 1.5 2 0 0 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) B12-binding PF02310.19 gi|294496130|ref|YP_003542623.1| - 5.1e-22 78.2 0.0 3.6e-21 75.4 0.3 2.1 2 0 0 2 2 2 1 B12 binding domain B12-binding_2 PF02607.17 gi|294496130|ref|YP_003542623.1| - 9.8e-16 58.0 0.9 2.6e-15 56.6 0.1 2.1 2 0 0 2 2 2 1 B12 binding domain YjcQ PF09639.10 gi|294496130|ref|YP_003542623.1| - 0.032 14.5 0.9 20 5.5 0.1 3.5 3 0 0 3 3 3 0 YjcQ protein TrbI_Ftype PF09677.10 gi|294496130|ref|YP_003542623.1| - 0.17 12.2 0.1 12 6.3 0.0 2.8 3 0 0 3 3 3 0 Type-F conjugative transfer system protein (TrbI_Ftype) DUF1724 PF08350.10 gi|294496131|ref|YP_003542624.1| - 5.4e-23 80.9 1.4 1.2e-22 79.8 0.2 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|294496131|ref|YP_003542624.1| - 9.3e-05 22.2 0.5 9.3e-05 22.2 0.5 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|294496131|ref|YP_003542624.1| - 0.003 17.6 0.0 0.0046 17.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|294496131|ref|YP_003542624.1| - 0.031 14.2 0.1 0.065 13.2 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_34 PF13601.6 gi|294496131|ref|YP_003542624.1| - 0.083 13.1 0.1 0.28 11.4 0.1 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|294496131|ref|YP_003542624.1| - 0.11 12.4 0.2 0.48 10.4 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix tRNA-synt_His PF13393.6 gi|294496132|ref|YP_003542625.1| - 1.7e-63 214.7 0.0 2.1e-63 214.5 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|294496132|ref|YP_003542625.1| - 4e-16 59.5 0.0 6.9e-16 58.7 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|294496132|ref|YP_003542625.1| - 1.4e-12 47.6 0.4 2.9e-12 46.6 0.4 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.20 gi|294496132|ref|YP_003542625.1| - 2.3e-07 30.2 1.0 0.00064 18.9 0.3 2.9 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|294496132|ref|YP_003542625.1| - 0.0014 18.2 0.1 0.011 15.2 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|294496132|ref|YP_003542625.1| - 0.019 14.4 0.0 0.04 13.3 0.0 1.6 1 0 0 1 1 1 0 Phenylalanyl tRNA synthetase beta chain CLM domain DUF4371 PF14291.6 gi|294496132|ref|YP_003542625.1| - 0.044 13.4 0.1 0.072 12.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4371) Amidohydro_1 PF01979.20 gi|294496134|ref|YP_003542627.1| - 2e-29 103.0 0.0 1.2e-27 97.2 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|294496134|ref|YP_003542627.1| - 2.9e-11 43.3 0.0 4.1e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|294496134|ref|YP_003542627.1| - 1.2e-08 34.8 0.0 3.7e-08 33.3 0.0 1.7 1 1 0 1 1 1 1 Amidohydrolase family Nup54_C PF18437.1 gi|294496134|ref|YP_003542627.1| - 0.13 12.2 0.1 0.41 10.6 0.1 1.9 2 0 0 2 2 2 0 Nup54 C-terminal interacting domain Usp PF00582.26 gi|294496135|ref|YP_003542628.1| - 1.3e-37 129.5 0.0 1.5e-37 129.3 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family CBS PF00571.28 gi|294496136|ref|YP_003542629.1| - 7.9e-41 138.3 8.3 1.4e-13 51.0 0.0 4.2 4 0 0 4 4 4 4 CBS domain SNURF PF07192.11 gi|294496136|ref|YP_003542629.1| - 0.00032 20.5 0.0 0.00059 19.6 0.0 1.5 1 0 0 1 1 1 1 SNURF/RPN4 protein RibD_C PF01872.17 gi|294496137|ref|YP_003542630.1| - 9.9e-54 182.2 0.0 1.1e-53 182.0 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Thioredoxin PF00085.20 gi|294496138|ref|YP_003542631.1| - 1.2e-09 38.0 0.0 2.1e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin DIM1 PF02966.16 gi|294496138|ref|YP_003542631.1| - 0.0012 18.6 0.0 0.0018 18.1 0.0 1.2 1 0 0 1 1 1 1 Mitosis protein DIM1 Thioredoxin_3 PF13192.6 gi|294496138|ref|YP_003542631.1| - 0.0056 16.7 0.0 0.013 15.6 0.0 1.5 2 0 0 2 2 2 1 Thioredoxin domain T4_deiodinase PF00837.17 gi|294496138|ref|YP_003542631.1| - 0.0091 15.3 0.0 0.01 15.2 0.0 1.2 1 0 0 1 1 1 1 Iodothyronine deiodinase TraF PF13728.6 gi|294496138|ref|YP_003542631.1| - 0.029 14.2 0.0 0.037 13.8 0.0 1.1 1 0 0 1 1 1 0 F plasmid transfer operon protein Thioredoxin_2 PF13098.6 gi|294496138|ref|YP_003542631.1| - 0.041 14.3 0.0 0.081 13.4 0.0 1.7 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_4 PF13462.6 gi|294496138|ref|YP_003542631.1| - 0.091 12.9 0.0 0.3 11.2 0.0 1.7 1 1 1 2 2 2 0 Thioredoxin Redoxin PF08534.10 gi|294496138|ref|YP_003542631.1| - 0.092 12.5 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Redoxin DsbD PF02683.15 gi|294496139|ref|YP_003542632.1| - 3.2e-31 108.9 22.7 9.4e-31 107.4 22.7 1.6 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|294496139|ref|YP_003542632.1| - 3.4e-10 40.2 19.2 5.2e-10 39.6 19.2 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region CbiC PF02570.15 gi|294496140|ref|YP_003542633.1| - 4.7e-63 212.4 0.8 5.6e-63 212.2 0.8 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase TP_methylase PF00590.20 gi|294496141|ref|YP_003542634.1| - 1.4e-34 119.9 0.1 1.7e-34 119.6 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_C PF01890.16 gi|294496142|ref|YP_003542635.1| - 1.6e-30 106.0 0.3 1.8e-30 105.9 0.3 1.0 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus NusA_N PF08529.11 gi|294496142|ref|YP_003542635.1| - 0.037 14.4 0.1 0.047 14.1 0.1 1.3 1 0 0 1 1 1 0 NusA N-terminal domain DUF4471 PF14740.6 gi|294496142|ref|YP_003542635.1| - 0.12 11.6 0.0 0.13 11.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4471) CbiG_N PF11760.8 gi|294496143|ref|YP_003542636.1| - 1.7e-33 114.5 1.6 7.9e-33 112.3 0.1 2.4 3 0 0 3 3 3 1 Cobalamin synthesis G N-terminal TP_methylase PF00590.20 gi|294496144|ref|YP_003542637.1| - 6.1e-45 153.8 0.1 7e-45 153.6 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|294496144|ref|YP_003542637.1| - 0.0056 17.1 0.1 0.027 14.9 0.1 2.1 1 1 0 1 1 1 1 Radical SAM superfamily YlzJ PF14035.6 gi|294496144|ref|YP_003542637.1| - 0.091 13.0 0.1 0.62 10.3 0.0 2.3 2 0 0 2 2 2 0 YlzJ-like protein TP_methylase PF00590.20 gi|294496145|ref|YP_003542638.1| - 1.2e-33 116.9 0.0 3.9e-33 115.2 0.0 1.7 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DNA_pol3_beta PF00712.19 gi|294496145|ref|YP_003542638.1| - 0.029 14.5 0.1 0.08 13.1 0.1 1.7 2 0 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain Methyltransf_31 PF13847.6 gi|294496146|ref|YP_003542639.1| - 1.3e-14 54.3 0.1 1.5e-14 54.0 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|294496146|ref|YP_003542639.1| - 5.1e-10 39.9 0.0 8.1e-10 39.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|294496146|ref|YP_003542639.1| - 5e-09 36.3 0.1 1.7e-08 34.6 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|294496146|ref|YP_003542639.1| - 6.4e-09 35.6 0.0 9.7e-09 35.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|294496146|ref|YP_003542639.1| - 1.3e-07 31.3 0.1 1.9e-07 30.8 0.1 1.2 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|294496146|ref|YP_003542639.1| - 1.1e-06 28.5 0.1 2.7e-06 27.3 0.1 1.6 1 1 1 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|294496146|ref|YP_003542639.1| - 1.7e-06 28.7 0.0 2.3e-06 28.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|294496146|ref|YP_003542639.1| - 3.4e-06 26.6 0.1 1e-05 25.1 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase Ubie_methyltran PF01209.18 gi|294496146|ref|YP_003542639.1| - 4.6e-05 22.9 0.1 5.8e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|294496146|ref|YP_003542639.1| - 5.1e-05 23.8 0.0 8.1e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_5 PF01795.19 gi|294496146|ref|YP_003542639.1| - 6.9e-05 22.5 0.0 8e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 MraW methylase family Methyltransf_24 PF13578.6 gi|294496146|ref|YP_003542639.1| - 7.7e-05 23.7 0.0 0.00012 23.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|294496146|ref|YP_003542639.1| - 8.4e-05 22.0 0.0 0.00011 21.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_3 PF01596.17 gi|294496146|ref|YP_003542639.1| - 0.00011 21.5 0.1 0.00017 20.9 0.1 1.4 1 1 0 1 1 1 1 O-methyltransferase DOT1 PF08123.13 gi|294496146|ref|YP_003542639.1| - 0.00012 21.7 0.0 0.0002 20.9 0.0 1.3 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_32 PF13679.6 gi|294496146|ref|YP_003542639.1| - 0.00021 21.3 0.0 0.00025 21.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|294496146|ref|YP_003542639.1| - 0.00048 19.8 0.0 0.0006 19.5 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 RrnaAD PF00398.20 gi|294496146|ref|YP_003542639.1| - 0.0015 17.7 0.1 0.0036 16.4 0.0 1.5 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase UPF0020 PF01170.18 gi|294496146|ref|YP_003542639.1| - 0.002 17.8 0.0 0.0029 17.3 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 GidB PF02527.15 gi|294496146|ref|YP_003542639.1| - 0.0038 16.6 0.1 0.0047 16.3 0.1 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G GCD14 PF08704.10 gi|294496146|ref|YP_003542639.1| - 0.0041 16.8 0.0 0.0052 16.5 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_23 PF13489.6 gi|294496146|ref|YP_003542639.1| - 0.0084 16.0 0.0 0.01 15.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|294496146|ref|YP_003542639.1| - 0.012 14.9 0.0 0.02 14.2 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase domain Methyltransf_16 PF10294.9 gi|294496146|ref|YP_003542639.1| - 0.028 14.2 0.0 0.042 13.6 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase AviRa PF11599.8 gi|294496146|ref|YP_003542639.1| - 0.081 12.4 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 RRNA methyltransferase AviRa DUF2594 PF10769.9 gi|294496146|ref|YP_003542639.1| - 0.13 12.3 0.1 0.22 11.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2594) Methyltr_RsmB-F PF01189.17 gi|294496146|ref|YP_003542639.1| - 0.13 11.9 0.0 0.28 10.8 0.0 1.5 1 1 1 2 2 2 0 16S rRNA methyltransferase RsmB/F GATase_3 PF07685.14 gi|294496147|ref|YP_003542640.1| - 3e-51 173.8 0.0 4.4e-51 173.3 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|294496147|ref|YP_003542640.1| - 3.4e-21 75.6 0.0 9.5e-21 74.2 0.0 1.7 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|294496147|ref|YP_003542640.1| - 2.1e-19 70.1 0.1 9.9e-19 67.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain GATase PF00117.28 gi|294496147|ref|YP_003542640.1| - 3.5e-05 23.7 0.0 6e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|294496147|ref|YP_003542640.1| - 0.0011 18.8 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|294496147|ref|YP_003542640.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Peptidase C26 DUF1724 PF08350.10 gi|294496148|ref|YP_003542641.1| - 2.2e-23 82.1 1.2 4.1e-22 78.1 0.8 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF1724) HemN_C PF06969.16 gi|294496148|ref|YP_003542641.1| - 0.023 14.7 0.0 1.5 9.0 0.0 2.8 3 1 0 3 3 3 0 HemN C-terminal domain HTH_45 PF14947.6 gi|294496148|ref|YP_003542641.1| - 0.082 12.9 1.6 2 8.5 0.0 3.3 4 0 0 4 4 4 0 Winged helix-turn-helix Response_reg PF00072.24 gi|294496149|ref|YP_003542642.1| - 6.6e-29 100.3 0.0 7.8e-29 100.1 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain UbiA PF01040.18 gi|294496150|ref|YP_003542643.1| - 5.3e-19 68.5 17.6 5.3e-19 68.5 15.7 1.9 1 1 1 2 2 2 2 UbiA prenyltransferase family DUF1980 PF09323.10 gi|294496150|ref|YP_003542643.1| - 1.3 8.9 5.1 0.44 10.4 1.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1980) HATPase_c PF02518.26 gi|294496151|ref|YP_003542644.1| - 2e-35 121.7 0.1 5.7e-35 120.2 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_1 PF02743.18 gi|294496151|ref|YP_003542644.1| - 5.2e-26 91.9 0.9 5.2e-26 91.9 0.9 2.2 2 1 1 3 3 3 1 Cache domain HisKA PF00512.25 gi|294496151|ref|YP_003542644.1| - 4.1e-22 78.0 0.1 4.1e-22 78.0 0.1 2.4 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 gi|294496151|ref|YP_003542644.1| - 2.5e-20 72.6 0.2 7e-20 71.1 0.1 1.9 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 gi|294496151|ref|YP_003542644.1| - 1.6e-06 28.1 0.0 3.5e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 gi|294496151|ref|YP_003542644.1| - 0.00014 21.7 0.0 0.00033 20.5 0.0 1.7 1 0 0 1 1 1 1 GHKL domain PAS_9 PF13426.7 gi|294496151|ref|YP_003542644.1| - 0.00017 21.8 0.0 0.00054 20.2 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|294496151|ref|YP_003542644.1| - 0.00085 19.6 0.0 0.0016 18.7 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|294496151|ref|YP_003542644.1| - 0.0015 18.5 0.0 0.0028 17.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HAMP PF00672.25 gi|294496151|ref|YP_003542644.1| - 0.016 15.6 0.0 0.04 14.3 0.0 1.8 1 0 0 1 1 1 0 HAMP domain HATPase_c_3 PF13589.6 gi|294496151|ref|YP_003542644.1| - 0.022 14.6 0.0 0.053 13.3 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LicD PF04991.13 gi|294496151|ref|YP_003542644.1| - 0.55 10.3 4.3 1.5 8.9 3.9 1.9 1 1 1 2 2 2 0 LicD family CorA PF01544.18 gi|294496152|ref|YP_003542645.1| - 1.2e-80 270.9 7.5 1.5e-80 270.6 7.5 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein T2SSF PF00482.23 gi|294496152|ref|YP_003542645.1| - 1.2 9.1 4.1 0.68 9.9 0.3 2.3 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F Glycos_transf_3 PF00591.21 gi|294496153|ref|YP_003542646.1| - 1.1e-101 339.7 0.1 1.6e-101 339.2 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|294496153|ref|YP_003542646.1| - 9e-17 60.7 0.5 3.3e-16 58.9 0.1 2.2 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain PHO4 PF01384.20 gi|294496153|ref|YP_003542646.1| - 0.12 11.4 1.0 0.21 10.6 1.0 1.4 1 1 0 1 1 1 0 Phosphate transporter family PRAI PF00697.22 gi|294496154|ref|YP_003542647.1| - 4.7e-35 121.1 0.1 5.3e-35 120.9 0.1 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BtpA PF03437.15 gi|294496154|ref|YP_003542647.1| - 0.022 14.2 0.7 0.036 13.5 0.3 1.5 1 1 0 1 1 1 0 BtpA family TMP-TENI PF02581.17 gi|294496154|ref|YP_003542647.1| - 0.12 11.7 0.4 0.35 10.2 0.0 2.0 2 0 0 2 2 2 0 Thiamine monophosphate synthase Chorismate_bind PF00425.18 gi|294496155|ref|YP_003542648.1| - 1.6e-95 319.6 0.0 2.3e-94 315.8 0.0 2.3 2 1 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|294496155|ref|YP_003542648.1| - 2e-21 76.7 2.3 7.8e-21 74.8 0.0 2.6 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|294496156|ref|YP_003542649.1| - 8.2e-45 152.9 0.0 9.1e-45 152.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|294496156|ref|YP_003542649.1| - 2e-16 60.4 0.0 6.4e-16 58.8 0.0 1.7 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|294496156|ref|YP_003542649.1| - 0.027 14.3 0.0 0.044 13.6 0.0 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family AAA_18 PF13238.6 gi|294496157|ref|YP_003542650.1| - 2.9e-23 82.8 0.2 3.8e-23 82.4 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|294496157|ref|YP_003542650.1| - 9.8e-06 25.9 0.0 1.4e-05 25.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|294496157|ref|YP_003542650.1| - 2.9e-05 24.5 0.1 0.00022 21.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|294496157|ref|YP_003542650.1| - 4.6e-05 23.4 0.1 0.15 11.9 0.0 2.2 1 1 1 2 2 2 2 Deoxynucleoside kinase AAA_33 PF13671.6 gi|294496157|ref|YP_003542650.1| - 0.00011 22.4 0.0 0.0014 18.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|294496157|ref|YP_003542650.1| - 0.00014 21.6 0.0 0.025 14.2 0.0 2.1 1 1 1 2 2 2 1 Dephospho-CoA kinase UPF0180 PF03698.13 gi|294496157|ref|YP_003542650.1| - 0.00017 21.7 0.2 0.35 11.1 0.1 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0180) AAA PF00004.29 gi|294496157|ref|YP_003542650.1| - 0.00046 20.6 0.0 0.00064 20.2 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|294496157|ref|YP_003542650.1| - 0.00048 19.5 0.0 0.0017 17.7 0.0 2.1 1 1 0 1 1 1 1 Zeta toxin PRK PF00485.18 gi|294496157|ref|YP_003542650.1| - 0.00057 19.7 0.0 0.0014 18.4 0.0 1.7 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family SKI PF01202.22 gi|294496157|ref|YP_003542650.1| - 0.00082 19.5 0.0 0.12 12.4 0.0 2.2 2 0 0 2 2 2 1 Shikimate kinase ADK PF00406.22 gi|294496157|ref|YP_003542650.1| - 0.0042 17.2 0.3 0.62 10.2 0.0 2.9 1 1 2 3 3 3 1 Adenylate kinase Rad17 PF03215.15 gi|294496157|ref|YP_003542650.1| - 0.0065 16.4 0.0 0.0082 16.1 0.0 1.4 1 1 0 1 1 1 1 Rad17 P-loop domain tRNA_lig_kinase PF08303.11 gi|294496157|ref|YP_003542650.1| - 0.0085 16.2 0.1 0.02 15.0 0.1 1.8 1 1 0 1 1 1 1 tRNA ligase kinase domain AAA_5 PF07728.14 gi|294496157|ref|YP_003542650.1| - 0.0094 15.9 0.0 0.015 15.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|294496157|ref|YP_003542650.1| - 0.011 16.1 0.1 0.016 15.5 0.1 1.5 1 1 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|294496157|ref|YP_003542650.1| - 0.055 13.2 0.0 0.1 12.3 0.0 1.6 2 0 0 2 2 2 0 Cytidylate kinase KORA PF16509.5 gi|294496157|ref|YP_003542650.1| - 0.056 13.7 0.0 17 5.8 0.0 2.3 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor DpaA_N PF16924.5 gi|294496157|ref|YP_003542650.1| - 0.065 13.3 0.1 0.42 10.7 0.0 2.0 2 0 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain AAA_16 PF13191.6 gi|294496157|ref|YP_003542650.1| - 0.067 13.6 0.0 0.11 12.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain KTI12 PF08433.10 gi|294496157|ref|YP_003542650.1| - 0.12 11.8 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 RuvB_N PF05496.12 gi|294496157|ref|YP_003542650.1| - 0.13 12.0 0.0 0.22 11.2 0.0 1.5 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain CTP_transf_like PF01467.26 gi|294496159|ref|YP_003542652.1| - 2.9e-15 56.7 0.0 2.3e-14 53.8 0.0 2.0 1 1 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|294496159|ref|YP_003542652.1| - 0.046 12.9 0.0 1.6 7.8 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase FrhB_FdhB_C PF04432.13 gi|294496160|ref|YP_003542653.1| - 2.4e-35 121.7 0.4 4.7e-35 120.7 0.0 1.7 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|294496160|ref|YP_003542653.1| - 1.9e-13 50.4 0.0 4.2e-13 49.2 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.27 gi|294496160|ref|YP_003542653.1| - 9.9e-09 34.7 21.1 4.8e-08 32.5 6.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294496160|ref|YP_003542653.1| - 4.5e-07 30.3 10.9 4.5e-07 30.3 10.9 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294496160|ref|YP_003542653.1| - 3.3e-06 27.2 8.9 3.3e-06 27.2 8.9 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294496160|ref|YP_003542653.1| - 5.4e-06 26.4 12.9 5.4e-06 26.4 12.9 2.6 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294496160|ref|YP_003542653.1| - 1.6e-05 24.7 4.9 1.6e-05 24.7 4.9 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|294496160|ref|YP_003542653.1| - 1.7e-05 24.6 5.5 1.7e-05 24.6 5.5 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|294496160|ref|YP_003542653.1| - 0.00043 20.4 12.2 0.00043 20.4 12.2 2.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294496160|ref|YP_003542653.1| - 0.00053 20.3 1.8 0.00053 20.3 1.8 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|294496160|ref|YP_003542653.1| - 0.00059 20.7 12.4 0.00059 20.7 12.4 2.8 2 1 0 2 2 1 1 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|294496160|ref|YP_003542653.1| - 0.0012 19.6 5.4 0.047 14.4 0.4 3.1 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|294496160|ref|YP_003542653.1| - 0.0018 18.7 9.2 0.0068 16.8 9.2 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|294496160|ref|YP_003542653.1| - 0.0066 17.0 8.2 0.0066 17.0 8.2 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|294496160|ref|YP_003542653.1| - 0.025 15.1 11.3 0.17 12.4 4.4 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CTP_transf_like PF01467.26 gi|294496160|ref|YP_003542653.1| - 0.055 13.7 0.0 0.097 12.9 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase-like Bac_luciferase PF00296.20 gi|294496161|ref|YP_003542654.1| - 6e-66 223.0 0.0 7.3e-66 222.7 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase PHP PF02811.19 gi|294496161|ref|YP_003542654.1| - 0.15 12.4 0.0 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 PHP domain Desulfoferrod_N PF06397.12 gi|294496162|ref|YP_003542655.1| - 6.4e-15 54.5 11.3 6.9e-15 54.4 11.3 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain zf-UDP PF14569.6 gi|294496162|ref|YP_003542655.1| - 0.0066 16.5 1.3 0.0076 16.4 1.3 1.2 1 0 0 1 1 1 1 Zinc-binding RING-finger zf-CCHC_2 PF13696.6 gi|294496162|ref|YP_003542655.1| - 0.024 14.5 0.6 0.038 13.8 0.6 1.4 1 0 0 1 1 1 0 Zinc knuckle zf-Sec23_Sec24 PF04810.15 gi|294496162|ref|YP_003542655.1| - 0.033 14.3 0.1 0.053 13.6 0.0 1.5 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf_UBZ PF18439.1 gi|294496162|ref|YP_003542655.1| - 0.085 12.5 0.3 0.21 11.2 0.0 1.7 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF2180 PF09947.9 gi|294496163|ref|YP_003542656.1| - 6.8e-28 96.5 10.7 7.7e-28 96.3 10.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) FYVE PF01363.21 gi|294496163|ref|YP_003542656.1| - 0.095 12.8 5.8 0.17 12.1 5.8 1.5 1 1 0 1 1 1 0 FYVE zinc finger zf-AN1 PF01428.16 gi|294496163|ref|YP_003542656.1| - 0.16 12.2 9.6 0.31 11.2 1.9 2.5 2 1 0 2 2 2 0 AN1-like Zinc finger Tnp_zf-ribbon_2 PF13842.6 gi|294496163|ref|YP_003542656.1| - 0.16 12.8 10.8 0.12 13.2 5.4 2.3 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon HNH_5 PF14279.6 gi|294496163|ref|YP_003542656.1| - 0.46 10.4 7.4 6.1 6.8 0.0 3.1 3 0 0 3 3 3 0 HNH endonuclease DZR PF12773.7 gi|294496163|ref|YP_003542656.1| - 1.1 9.4 7.2 5.9 7.0 7.2 2.0 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_S27e PF01667.17 gi|294496163|ref|YP_003542656.1| - 1.6 8.5 8.9 1.2 8.9 5.0 2.4 2 1 0 2 2 2 0 Ribosomal protein S27 DUF2180 PF09947.9 gi|294496164|ref|YP_003542657.1| - 7.1e-24 83.6 7.0 7.9e-24 83.4 7.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) Tnp_zf-ribbon_2 PF13842.6 gi|294496164|ref|YP_003542657.1| - 0.002 18.9 3.5 0.0066 17.2 0.7 2.1 2 0 0 2 2 2 1 DDE_Tnp_1-like zinc-ribbon zf-RING_5 PF14634.6 gi|294496164|ref|YP_003542657.1| - 0.026 14.5 5.2 2.3 8.3 1.3 2.3 2 0 0 2 2 2 0 zinc-RING finger domain FYVE PF01363.21 gi|294496164|ref|YP_003542657.1| - 0.034 14.3 3.6 0.057 13.6 3.6 1.4 1 1 0 1 1 1 0 FYVE zinc finger DUF4674 PF15719.5 gi|294496164|ref|YP_003542657.1| - 1.3 9.0 3.9 8.7 6.3 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4674) zf-UBP_var PF17807.1 gi|294496164|ref|YP_003542657.1| - 2.6 7.9 7.1 3.5 7.5 0.9 2.1 2 0 0 2 2 2 0 Variant UBP zinc finger CMD PF02627.20 gi|294496165|ref|YP_003542658.1| - 1.2e-15 57.3 0.3 1.5e-15 57.0 0.3 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF3666 PF12408.8 gi|294496165|ref|YP_003542658.1| - 0.13 11.5 0.0 0.34 10.1 0.0 1.7 1 0 0 1 1 1 0 Ribose-5-phosphate isomerase SapB_1 PF05184.15 gi|294496165|ref|YP_003542658.1| - 0.17 11.9 5.2 0.98 9.5 2.4 3.0 2 1 0 2 2 2 0 Saposin-like type B, region 1 Cytochrome_C554 PF13435.6 gi|294496166|ref|YP_003542659.1| - 8.6e-11 42.6 6.5 2e-08 35.0 0.5 2.5 2 0 0 2 2 2 2 Cytochrome c554 and c-prime PGF-CTERM PF18204.1 gi|294496166|ref|YP_003542659.1| - 9.1e-07 28.7 0.2 1.5e-06 27.9 0.2 1.4 1 0 0 1 1 1 1 PGF-CTERM motif Cytochrome_C7 PF14522.6 gi|294496166|ref|YP_003542659.1| - 8.9e-06 25.6 12.3 0.043 13.8 3.8 3.1 1 1 1 2 2 2 2 Cytochrome c7 and related cytochrome c Cytochrom_c3_2 PF14537.6 gi|294496166|ref|YP_003542659.1| - 8e-05 23.0 10.1 0.035 14.6 1.1 3.3 2 2 0 2 2 2 2 Cytochrome c3 Cytochrom_C552 PF02335.15 gi|294496166|ref|YP_003542659.1| - 0.03 13.2 11.7 0.025 13.5 3.1 2.5 1 1 2 3 3 3 0 Cytochrome c552 E6 PF00518.17 gi|294496166|ref|YP_003542659.1| - 0.033 14.6 0.7 0.88 10.0 0.0 2.4 2 0 0 2 2 2 0 Early Protein (E6) Cytochrom_CIII PF02085.16 gi|294496166|ref|YP_003542659.1| - 0.065 13.6 13.4 2.4 8.6 4.5 3.0 1 1 1 2 2 2 0 Class III cytochrome C family ORC4_C PF14629.6 gi|294496166|ref|YP_003542659.1| - 0.12 11.7 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 4 C-terminus Paired_CXXCH_1 PF09699.10 gi|294496166|ref|YP_003542659.1| - 1.2 8.9 15.1 12 5.7 0.1 4.7 3 1 2 5 5 5 0 Doubled CXXCH motif (Paired_CXXCH_1) Fer4 PF00037.27 gi|294496167|ref|YP_003542660.1| - 1.7e-14 52.9 15.2 2.2e-07 30.4 5.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|294496167|ref|YP_003542660.1| - 2.2e-12 46.9 22.3 4.5e-09 36.3 10.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|294496167|ref|YP_003542660.1| - 3.5e-12 46.7 6.6 4.2e-12 46.5 6.6 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294496167|ref|YP_003542660.1| - 3.5e-12 45.8 14.1 6.9e-07 29.1 1.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|294496167|ref|YP_003542660.1| - 3.7e-10 39.8 7.4 4.8e-10 39.4 7.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294496167|ref|YP_003542660.1| - 9.3e-10 38.0 11.7 7.5e-05 22.6 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|294496167|ref|YP_003542660.1| - 1.8e-09 37.6 5.4 2.6e-09 37.1 5.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294496167|ref|YP_003542660.1| - 5e-09 37.0 6.2 0.00059 20.7 2.2 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|294496167|ref|YP_003542660.1| - 2.2e-06 28.1 14.1 0.00012 22.5 1.4 2.1 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|294496167|ref|YP_003542660.1| - 3.1e-06 27.3 9.3 0.0017 18.7 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294496167|ref|YP_003542660.1| - 7.1e-06 26.5 8.9 0.0035 17.9 8.9 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|294496167|ref|YP_003542660.1| - 2.3e-05 24.8 9.1 0.029 14.8 3.1 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|294496167|ref|YP_003542660.1| - 3.5e-05 24.4 11.2 0.0024 18.7 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|294496167|ref|YP_003542660.1| - 0.00019 22.1 15.5 0.025 15.3 15.5 2.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|294496167|ref|YP_003542660.1| - 0.00055 20.1 10.4 0.033 14.4 10.3 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|294496167|ref|YP_003542660.1| - 0.0014 18.7 1.4 0.0015 18.7 1.4 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|294496167|ref|YP_003542660.1| - 0.055 14.3 8.7 0.3 12.0 0.6 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Toxin_2 PF00451.19 gi|294496167|ref|YP_003542660.1| - 0.25 11.7 0.2 0.25 11.7 0.2 2.3 2 1 0 2 2 2 0 Scorpion short toxin, BmKK2 AFP PF02420.15 gi|294496167|ref|YP_003542660.1| - 1.2 9.7 7.7 9.7 6.9 0.1 2.6 2 0 0 2 2 2 0 Insect antifreeze protein repeat FMN_red PF03358.15 gi|294496168|ref|YP_003542661.1| - 7.4e-33 113.5 0.0 9.3e-33 113.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|294496168|ref|YP_003542661.1| - 2.2e-07 30.8 0.0 3.5e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin-like fold NAD_binding_1 PF00175.21 gi|294496169|ref|YP_003542662.1| - 1.5e-20 73.9 0.0 2.3e-20 73.2 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|294496169|ref|YP_003542662.1| - 1.9e-13 50.6 0.0 3.5e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 gi|294496169|ref|YP_003542662.1| - 1.9e-06 28.0 0.1 0.00023 21.3 0.1 2.3 1 1 1 2 2 2 2 Ferric reductase NAD binding domain FAD_binding_8 PF08022.12 gi|294496169|ref|YP_003542662.1| - 0.00012 22.1 0.0 0.0003 20.8 0.0 1.7 1 1 0 1 1 1 1 FAD-binding domain Flavoprotein PF02441.19 gi|294496170|ref|YP_003542663.1| - 1.8e-20 73.3 0.0 2.8e-20 72.6 0.0 1.3 1 0 0 1 1 1 1 Flavoprotein Inos-1-P_synth PF01658.17 gi|294496172|ref|YP_003542665.1| - 1e-32 112.6 0.0 1.7e-32 111.9 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|294496172|ref|YP_003542665.1| - 0.01 15.2 0.0 0.1 12.0 0.0 2.1 1 1 1 2 2 2 0 Myo-inositol-1-phosphate synthase DHHC PF01529.20 gi|294496173|ref|YP_003542666.1| - 4.3 7.5 6.4 9.2 6.4 6.4 1.6 1 1 0 1 1 1 0 DHHC palmitoyltransferase SUR7 PF06687.12 gi|294496173|ref|YP_003542666.1| - 5.9 6.5 10.7 10 5.7 10.7 1.5 1 1 0 1 1 1 0 SUR7/PalI family Exosortase_EpsH PF09721.10 gi|294496174|ref|YP_003542667.1| - 1.2e-13 51.2 11.0 1.5e-13 50.9 11.0 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) Cation_ATPase_C PF00689.21 gi|294496174|ref|YP_003542667.1| - 0.28 10.9 7.3 0.37 10.5 7.3 1.2 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus TRAP_beta PF05753.14 gi|294496175|ref|YP_003542668.1| - 0.11 11.9 0.1 0.21 11.0 0.1 1.3 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) SdrD_B PF17210.3 gi|294496176|ref|YP_003542669.1| - 1.6e-36 124.9 4.2 1.6e-36 124.9 4.2 7.0 9 0 0 9 9 9 1 SdrD B-like domain DUF11 PF01345.18 gi|294496176|ref|YP_003542669.1| - 1.5e-22 79.7 125.3 0.015 15.6 2.3 16.0 12 1 0 15 15 15 14 Domain of unknown function DUF11 Inhibitor_I42 PF09394.10 gi|294496176|ref|YP_003542669.1| - 1.4e-20 73.5 38.4 1.3 9.5 0.1 14.7 15 0 0 15 15 15 12 Chagasin family peptidase inhibitor I42 DUF2840 PF11000.8 gi|294496176|ref|YP_003542669.1| - 5.8e-18 65.1 0.0 4.6 7.0 0.0 11.0 12 0 0 12 12 12 4 Protein of unknown function (DUF2840) DUF1573 PF07610.11 gi|294496176|ref|YP_003542669.1| - 2.7e-11 43.3 16.0 20 5.3 0.1 13.5 14 0 0 14 14 14 1 Protein of unknown function (DUF1573) CarboxypepD_reg PF13620.6 gi|294496176|ref|YP_003542669.1| - 5.7e-08 32.9 2.0 6.5e-07 29.5 2.0 3.0 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Blt1_C PF17183.4 gi|294496176|ref|YP_003542669.1| - 1.1e-06 28.1 0.0 2.3e+02 1.5 0.0 8.6 9 0 0 9 9 9 0 Get5 carboxyl domain HTH_3 PF01381.22 gi|294496176|ref|YP_003542669.1| - 0.00052 20.0 0.0 2.8e+02 1.7 0.0 6.6 8 0 0 8 8 8 0 Helix-turn-helix SBBP PF06739.11 gi|294496176|ref|YP_003542669.1| - 2.5 8.2 40.3 85 3.3 0.2 10.9 9 0 0 9 9 9 0 Beta-propeller repeat Gelsolin PF00626.22 gi|294496177|ref|YP_003542670.1| - 0.11 12.4 0.1 0.21 11.5 0.1 1.4 1 0 0 1 1 1 0 Gelsolin repeat HTH_45 PF14947.6 gi|294496178|ref|YP_003542671.1| - 6.2e-24 83.8 1.1 7e-24 83.6 1.1 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix Topo_Zn_Ribbon PF08272.11 gi|294496178|ref|YP_003542671.1| - 0.083 12.6 0.4 0.13 12.0 0.4 1.3 1 0 0 1 1 1 0 Topoisomerase I zinc-ribbon-like Cadherin-like PF12733.7 gi|294496179|ref|YP_003542672.1| - 0.016 15.7 0.9 0.11 13.0 0.2 2.0 1 1 1 2 2 2 0 Cadherin-like beta sandwich domain SSP160 PF06933.11 gi|294496180|ref|YP_003542673.1| - 2.9 6.0 11.5 3.7 5.6 11.5 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 RAP1 PF07218.11 gi|294496180|ref|YP_003542673.1| - 5.2 5.2 4.7 6.7 4.9 4.7 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) DUF515 PF04415.12 gi|294496180|ref|YP_003542673.1| - 6.1 5.1 5.9 7.4 4.8 5.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) bMG10 PF17973.1 gi|294496181|ref|YP_003542674.1| - 1.7e-20 73.5 2.5 3.3e-05 24.1 0.0 4.7 4 1 0 4 4 4 3 Bacterial Alpha-2-macroglobulin MG10 domain DUF11 PF01345.18 gi|294496181|ref|YP_003542674.1| - 1.1e-09 38.5 11.8 0.056 13.8 0.1 5.3 5 1 1 6 6 6 4 Domain of unknown function DUF11 MG2 PF01835.19 gi|294496181|ref|YP_003542674.1| - 1.7e-05 25.2 0.1 2.8 8.4 0.0 4.2 4 0 0 4 4 4 1 MG2 domain NPCBM_assoc PF10633.9 gi|294496181|ref|YP_003542674.1| - 0.00014 22.0 18.0 0.39 11.0 0.8 5.5 3 3 0 3 3 3 3 NPCBM-associated, NEW3 domain of alpha-galactosidase HepII_C PF18675.1 gi|294496181|ref|YP_003542674.1| - 0.00024 21.1 4.3 6.5 6.9 0.0 4.7 5 0 0 5 5 5 2 Heparinase II C-terminal domain Peptidase_A4 PF01828.17 gi|294496181|ref|YP_003542674.1| - 0.00069 19.2 6.2 1.6 8.2 0.3 4.1 4 0 0 4 4 4 2 Peptidase A4 family DUF4795 PF16043.5 gi|294496181|ref|YP_003542674.1| - 0.0015 18.2 0.8 7 6.2 0.0 3.1 3 0 0 3 3 3 2 Domain of unknown function (DUF4795) GBS_Bsp-like PF08481.10 gi|294496181|ref|YP_003542674.1| - 0.06 13.5 0.0 60 3.9 0.0 4.3 4 0 0 4 4 4 0 GBS Bsp-like repeat CHU_C PF13585.6 gi|294496181|ref|YP_003542674.1| - 0.065 13.3 0.4 2e+02 2.1 0.1 4.2 4 0 0 4 4 4 0 C-terminal domain of CHU protein family PPC PF04151.15 gi|294496181|ref|YP_003542674.1| - 0.16 13.1 20.4 1.1 10.4 0.6 4.5 5 0 0 5 5 4 0 Bacterial pre-peptidase C-terminal domain Chlam_OMP6 PF03504.13 gi|294496181|ref|YP_003542674.1| - 1.3 9.4 11.2 15 5.9 0.1 4.9 5 0 0 5 5 5 0 Chlamydia cysteine-rich outer membrane protein 6 MbtH PF03621.13 gi|294496181|ref|YP_003542674.1| - 1.4 8.5 9.1 12 5.5 0.2 3.9 4 0 0 4 4 4 0 MbtH-like protein EF-hand_5 PF13202.6 gi|294496182|ref|YP_003542675.1| - 0.23 11.0 6.2 0.4 10.3 0.4 3.3 3 0 0 3 3 3 0 EF hand MHC_II_alpha PF00993.20 gi|294496182|ref|YP_003542675.1| - 0.32 10.7 3.6 1.8 8.3 0.1 3.3 3 0 0 3 3 3 0 Class II histocompatibility antigen, alpha domain EF-hand_1 PF00036.32 gi|294496182|ref|YP_003542675.1| - 6.3 6.6 16.7 2.4 7.9 0.1 6.0 7 0 0 7 7 7 0 EF hand Nitroreductase PF00881.24 gi|294496183|ref|YP_003542676.1| - 3.6e-31 108.5 1.1 5.4e-17 62.4 0.1 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|294496183|ref|YP_003542676.1| - 2.9e-13 49.9 0.1 0.0023 17.5 0.0 3.0 1 1 2 3 3 3 3 Putative TM nitroreductase CT_C_D PF02682.16 gi|294496183|ref|YP_003542676.1| - 0.063 13.0 0.0 0.072 12.8 0.0 1.2 1 0 0 1 1 1 0 Carboxyltransferase domain, subdomain C and D Rubrerythrin PF02915.17 gi|294496184|ref|YP_003542677.1| - 3.8e-15 56.5 8.0 4.7e-15 56.2 8.0 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|294496184|ref|YP_003542677.1| - 8.5e-06 26.0 3.1 0.23 11.7 0.2 2.5 1 1 0 1 1 1 1 Ferritin-like domain DUF2202 PF09968.9 gi|294496184|ref|YP_003542677.1| - 0.0042 16.9 0.6 0.19 11.5 0.1 2.2 2 0 0 2 2 2 2 Uncharacterized protein domain (DUF2202) CmlA_N PF18456.1 gi|294496184|ref|YP_003542677.1| - 0.07 12.4 0.0 0.095 12.0 0.0 1.3 1 0 0 1 1 1 0 Diiron non-heme beta-hydroxylase N-terminal domain Flavodoxin_1 PF00258.25 gi|294496185|ref|YP_003542678.1| - 1e-12 48.5 0.0 2.5e-12 47.2 0.0 1.7 1 0 0 1 1 1 1 Flavodoxin Lactamase_B PF00753.27 gi|294496185|ref|YP_003542678.1| - 2.1e-08 34.4 0.0 3.1e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|294496185|ref|YP_003542678.1| - 0.00083 18.9 0.0 0.0033 17.0 0.0 1.8 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Flavodoxin_5 PF12724.7 gi|294496185|ref|YP_003542678.1| - 0.026 14.8 0.0 0.052 13.8 0.0 1.5 1 0 0 1 1 1 0 Flavodoxin domain TFIID_20kDa PF03847.13 gi|294496185|ref|YP_003542678.1| - 0.027 15.0 0.2 0.075 13.5 0.0 1.8 2 0 0 2 2 2 0 Transcription initiation factor TFIID subunit A Flavodoxin_3 PF12641.7 gi|294496185|ref|YP_003542678.1| - 0.076 12.7 0.0 0.21 11.2 0.0 1.8 2 1 0 2 2 2 0 Flavodoxin domain FeThRed_B PF02943.15 gi|294496186|ref|YP_003542679.1| - 5.9e-17 61.6 2.2 6.4e-17 61.5 2.2 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain 2-Hacid_dh_C PF02826.19 gi|294496187|ref|YP_003542680.1| - 2e-62 209.7 0.1 3.2e-62 209.0 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|294496187|ref|YP_003542680.1| - 3.5e-40 136.8 1.0 3.5e-40 136.8 1.0 2.0 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.12 gi|294496187|ref|YP_003542680.1| - 3.5e-05 23.4 0.1 0.00025 20.7 0.0 2.3 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|294496187|ref|YP_003542680.1| - 4.2e-05 23.8 1.0 0.00018 21.7 0.1 2.5 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ACT PF01842.25 gi|294496187|ref|YP_003542680.1| - 0.014 15.2 0.1 0.059 13.2 0.1 2.1 1 0 0 1 1 1 0 ACT domain UDPG_MGDP_dh_C PF03720.15 gi|294496187|ref|YP_003542680.1| - 0.049 14.1 0.0 0.19 12.1 0.0 2.0 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|294496187|ref|YP_003542680.1| - 0.069 13.7 1.6 0.67 10.6 0.0 3.1 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent DUF2240 PF09999.9 gi|294496189|ref|YP_003542682.1| - 2e-42 144.2 0.0 2.4e-42 144.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) Ribosomal_L18 PF17135.4 gi|294496190|ref|YP_003542683.1| - 3.1e-13 49.5 0.1 3.5e-13 49.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|294496190|ref|YP_003542683.1| - 5.9e-08 33.5 0.7 5.9e-08 33.5 0.7 1.9 2 1 0 2 2 2 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L13 PF00572.18 gi|294496191|ref|YP_003542684.1| - 4.1e-11 43.2 0.0 5.1e-09 36.4 0.0 2.1 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|294496192|ref|YP_003542685.1| - 1.3e-32 112.8 0.3 1.5e-32 112.7 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|294496193|ref|YP_003542686.1| - 1.2e-29 102.3 0.2 1.3e-29 102.2 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S14 PF00253.21 gi|294496193|ref|YP_003542686.1| - 0.14 11.9 1.7 0.32 10.8 0.0 1.9 1 1 1 2 2 2 0 Ribosomal protein S14p/S29e RNA_pol_Rpb6 PF01192.22 gi|294496194|ref|YP_003542687.1| - 2e-10 40.5 0.1 2.3e-10 40.2 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 Ribosomal_S2 PF00318.20 gi|294496195|ref|YP_003542688.1| - 1.7e-25 89.5 0.4 4.6e-15 55.4 0.4 2.2 1 1 1 2 2 2 2 Ribosomal protein S2 Memo PF01875.17 gi|294496196|ref|YP_003542689.1| - 4.2e-78 262.2 0.0 4.8e-78 262.0 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|294496196|ref|YP_003542689.1| - 1.1e-05 24.7 0.0 2.6e-05 23.5 0.0 1.6 1 1 1 2 2 2 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase GHMP_kinases_N PF00288.26 gi|294496197|ref|YP_003542690.1| - 1.6e-17 63.5 2.6 4.8e-17 62.0 2.6 1.9 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|294496197|ref|YP_003542690.1| - 9.3e-14 51.6 1.3 9.3e-14 51.6 1.3 2.3 2 1 1 3 3 3 1 GHMP kinases C terminal AA_kinase PF00696.28 gi|294496198|ref|YP_003542691.1| - 1.2e-39 136.3 0.3 1.4e-39 136.1 0.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.18 gi|294496199|ref|YP_003542692.1| - 1.3e-32 113.2 0.9 3.9e-30 105.0 0.9 2.2 1 1 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|294496199|ref|YP_003542692.1| - 0.00015 20.9 7.2 0.027 13.5 0.1 3.5 2 2 1 3 3 3 2 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|294496199|ref|YP_003542692.1| - 0.0031 16.9 1.6 0.0037 16.7 0.6 1.8 1 1 0 1 1 1 1 Nitronate monooxygenase Glu_synthase PF01645.17 gi|294496199|ref|YP_003542692.1| - 0.004 16.3 1.4 0.0089 15.2 1.4 1.6 1 1 0 1 1 1 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|294496199|ref|YP_003542692.1| - 0.0083 15.4 1.4 0.025 13.8 0.3 2.2 2 1 1 3 3 3 1 Dihydroorotate dehydrogenase RMMBL PF07521.12 gi|294496200|ref|YP_003542693.1| - 1.4e-09 37.7 0.7 1.2e-08 34.8 0.2 2.6 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|294496200|ref|YP_003542693.1| - 3.5e-08 33.2 1.1 1.5e-07 31.1 0.2 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|294496200|ref|YP_003542693.1| - 2e-07 31.2 1.6 6.1e-07 29.6 1.6 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily polyprenyl_synt PF00348.17 gi|294496201|ref|YP_003542694.1| - 1.9e-69 233.6 0.0 2.3e-69 233.3 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DUF1131 PF06572.12 gi|294496201|ref|YP_003542694.1| - 0.082 12.6 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1131) T2SSE PF00437.20 gi|294496202|ref|YP_003542695.1| - 8.8e-41 139.8 0.0 1.3e-40 139.2 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|294496202|ref|YP_003542695.1| - 0.023 14.5 0.0 0.049 13.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|294496202|ref|YP_003542695.1| - 0.13 12.8 0.2 0.28 11.6 0.2 1.6 1 0 0 1 1 1 0 AAA domain T2SSF PF00482.23 gi|294496203|ref|YP_003542696.1| - 2e-34 118.2 3.0 1.4e-17 63.8 0.0 3.2 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F 7tm_1 PF00001.21 gi|294496203|ref|YP_003542696.1| - 0.021 14.1 4.0 0.63 9.3 0.1 3.2 2 1 0 2 2 2 0 7 transmembrane receptor (rhodopsin family) Pilin_N PF07790.11 gi|294496204|ref|YP_003542697.1| - 0.62 11.0 5.0 0.85 10.6 1.7 2.9 3 2 0 3 3 3 0 Archaeal Type IV pilin, N-terminal Radical_SAM PF04055.21 gi|294496205|ref|YP_003542698.1| - 3.8e-21 76.2 0.0 3.8e-21 76.2 0.0 2.0 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|294496205|ref|YP_003542698.1| - 0.0024 18.1 0.4 0.0089 16.3 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain DZR PF12773.7 gi|294496205|ref|YP_003542698.1| - 0.091 12.8 0.3 0.091 12.8 0.3 3.1 3 1 0 3 3 3 0 Double zinc ribbon NOB1_Zn_bind PF08772.11 gi|294496205|ref|YP_003542698.1| - 0.21 11.7 0.1 0.21 11.7 0.1 2.8 3 0 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.6 gi|294496205|ref|YP_003542698.1| - 0.31 10.5 0.1 0.31 10.5 0.1 3.8 4 0 0 4 4 4 0 zinc-ribbon domain DUF1272 PF06906.11 gi|294496205|ref|YP_003542698.1| - 0.42 10.7 9.5 3.1 7.9 0.0 4.1 4 0 0 4 4 4 0 Protein of unknown function (DUF1272) PyrI_C PF02748.15 gi|294496205|ref|YP_003542698.1| - 1.6 8.7 9.8 10 6.1 0.0 3.4 3 0 0 3 3 3 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain TF_Zn_Ribbon PF08271.12 gi|294496205|ref|YP_003542698.1| - 6.6 6.3 7.8 5.7 6.5 0.2 3.1 2 1 1 3 3 3 0 TFIIB zinc-binding PAS_3 PF08447.12 gi|294496206|ref|YP_003542699.1| - 2.4e-41 139.9 2.2 7.7e-14 51.8 0.0 5.7 6 0 0 6 6 6 3 PAS fold PAS PF00989.25 gi|294496206|ref|YP_003542699.1| - 7e-36 122.7 0.0 1.1e-13 51.2 0.0 4.7 4 0 0 4 4 4 4 PAS fold PAS_4 PF08448.10 gi|294496206|ref|YP_003542699.1| - 7.5e-35 119.5 0.0 5.1e-13 49.2 0.0 5.6 5 0 0 5 5 5 4 PAS fold PAS_9 PF13426.7 gi|294496206|ref|YP_003542699.1| - 1.3e-33 115.3 0.1 3.5e-12 46.5 0.0 5.2 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.26 gi|294496206|ref|YP_003542699.1| - 1.7e-33 115.5 0.1 3.4e-33 114.5 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|294496206|ref|YP_003542699.1| - 9.3e-26 90.8 0.0 3.1e-16 59.9 0.0 2.9 3 0 0 3 3 3 2 GAF domain HisKA PF00512.25 gi|294496206|ref|YP_003542699.1| - 1e-19 70.3 0.4 3.7e-19 68.5 0.0 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|294496206|ref|YP_003542699.1| - 4.9e-18 64.7 0.1 1.9e-09 37.3 0.0 4.5 4 0 0 4 4 4 2 PAS domain GAF PF01590.26 gi|294496206|ref|YP_003542699.1| - 1.6e-07 32.0 0.0 0.023 15.3 0.0 2.6 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.6 gi|294496206|ref|YP_003542699.1| - 3.8e-07 30.5 0.0 0.00036 20.9 0.0 2.7 2 0 0 2 2 2 2 GAF domain HATPase_c_3 PF13589.6 gi|294496206|ref|YP_003542699.1| - 0.00023 21.0 0.0 0.00061 19.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|294496206|ref|YP_003542699.1| - 0.00053 20.1 0.2 0.017 15.3 0.0 3.3 4 0 0 4 4 4 1 PAS fold HATPase_c_5 PF14501.6 gi|294496206|ref|YP_003542699.1| - 0.0006 19.7 0.0 0.0016 18.3 0.0 1.8 1 0 0 1 1 1 1 GHKL domain Bul1_C PF04426.12 gi|294496206|ref|YP_003542699.1| - 0.05 13.0 3.2 0.12 11.7 3.2 1.6 1 0 0 1 1 1 0 Bul1 C terminus PMC2NT PF08066.12 gi|294496206|ref|YP_003542699.1| - 0.31 11.8 2.2 46 4.8 0.0 3.8 2 1 1 3 3 3 0 PMC2NT (NUC016) domain PsiE PF06146.12 gi|294496207|ref|YP_003542700.1| - 7.3e-10 39.1 9.1 7.3e-10 39.1 9.1 2.2 2 0 0 2 2 2 1 Phosphate-starvation-inducible E MerC PF03203.14 gi|294496207|ref|YP_003542700.1| - 0.11 12.9 4.7 0.21 12.1 3.8 1.8 1 1 1 2 2 2 0 MerC mercury resistance protein CMD PF02627.20 gi|294496209|ref|YP_003542702.1| - 2.1e-15 56.5 0.0 2.5e-15 56.3 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family HTH_20 PF12840.7 gi|294496210|ref|YP_003542703.1| - 1.8e-05 24.7 0.0 2.8e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|294496210|ref|YP_003542703.1| - 0.00031 20.5 0.2 0.00046 20.0 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family zf-CRD PF17979.1 gi|294496211|ref|YP_003542704.1| - 0.011 15.9 0.2 0.013 15.6 0.2 1.0 1 0 0 1 1 1 0 Cysteine rich domain with multizinc binding regions zinc_ribbon_4 PF13717.6 gi|294496211|ref|YP_003542704.1| - 0.053 13.5 3.6 0.47 10.4 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|294496211|ref|YP_003542704.1| - 0.053 14.4 0.9 2.1 9.4 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger ADK_lid PF05191.14 gi|294496211|ref|YP_003542704.1| - 0.061 13.3 1.5 0.061 13.3 1.5 2.2 1 1 1 2 2 2 0 Adenylate kinase, active site lid zf-C2H2 PF00096.26 gi|294496211|ref|YP_003542704.1| - 0.08 13.4 1.2 2 9.0 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 gi|294496211|ref|YP_003542704.1| - 0.098 13.1 0.7 0.41 11.2 0.2 1.9 2 0 0 2 2 2 0 Zinc-finger double domain Lar_restr_allev PF14354.6 gi|294496211|ref|YP_003542704.1| - 0.12 12.8 1.7 1.4 9.4 0.1 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar C1_2 PF03107.16 gi|294496211|ref|YP_003542704.1| - 0.51 10.7 3.7 1.2 9.6 0.2 2.0 1 1 1 2 2 2 0 C1 domain Zn-ribbon_8 PF09723.10 gi|294496211|ref|YP_003542704.1| - 0.7 10.1 3.6 11 6.3 0.2 2.1 2 0 0 2 2 2 0 Zinc ribbon domain DUF98 PF01947.16 gi|294496212|ref|YP_003542705.1| - 1.9e-18 66.9 0.0 2.8e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 p-hydroxybenzoic acid synthase UTRA PF07702.13 gi|294496212|ref|YP_003542705.1| - 4.3e-05 23.4 0.1 6e-05 22.9 0.1 1.2 1 0 0 1 1 1 1 UTRA domain DUF5611 PF18446.1 gi|294496213|ref|YP_003542706.1| - 1.7e-36 125.2 0.3 1.9e-36 125.0 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) Radical_SAM PF04055.21 gi|294496214|ref|YP_003542707.1| - 3.2e-11 43.9 0.0 5e-11 43.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|294496214|ref|YP_003542707.1| - 6.4e-06 26.5 0.0 9.9e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|294496214|ref|YP_003542707.1| - 0.0068 16.5 0.0 0.016 15.3 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain HTH_Mga PF08280.11 gi|294496214|ref|YP_003542707.1| - 0.14 12.2 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain KH_1 PF00013.29 gi|294496215|ref|YP_003542708.1| - 0.047 13.5 0.0 0.085 12.7 0.0 1.4 1 0 0 1 1 1 0 KH domain Mst1_SARAH PF11629.8 gi|294496215|ref|YP_003542708.1| - 0.22 11.7 0.6 0.22 11.7 0.6 1.7 2 0 0 2 2 2 0 C terminal SARAH domain of Mst1 AIRS PF00586.24 gi|294496216|ref|YP_003542709.1| - 5.4e-17 62.2 0.2 1.3e-16 61.0 0.2 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|294496216|ref|YP_003542709.1| - 9.9e-15 55.0 0.0 2e-14 54.0 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Radical_SAM PF04055.21 gi|294496217|ref|YP_003542710.1| - 2e-25 90.1 0.0 2.9e-25 89.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|294496217|ref|YP_003542710.1| - 1.2e-06 28.7 0.0 2.9e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|294496217|ref|YP_003542710.1| - 0.0051 17.1 0.0 0.0094 16.2 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain PTPS PF01242.19 gi|294496218|ref|YP_003542711.1| - 4.3e-28 97.8 0.0 5.1e-28 97.5 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Radical_SAM PF04055.21 gi|294496219|ref|YP_003542712.1| - 2.7e-12 47.4 0.3 5.4e-12 46.4 0.3 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|294496219|ref|YP_003542712.1| - 1.2e-06 28.6 0.2 3.6e-06 27.1 0.2 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|294496219|ref|YP_003542712.1| - 3.8e-05 24.0 0.1 0.00011 22.5 0.1 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain DUF366 PF04017.12 gi|294496220|ref|YP_003542713.1| - 5.6e-72 241.1 1.9 6.3e-72 240.9 1.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) QueC PF06508.13 gi|294496221|ref|YP_003542714.1| - 1.1e-54 185.1 0.0 1.3e-54 184.9 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|294496221|ref|YP_003542714.1| - 0.014 15.1 0.1 0.019 14.6 0.1 1.1 1 0 0 1 1 1 0 Asparagine synthase Fer2 PF00111.27 gi|294496221|ref|YP_003542714.1| - 0.035 14.1 0.1 0.066 13.2 0.1 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain ATP_bind_3 PF01171.20 gi|294496221|ref|YP_003542714.1| - 0.15 11.8 0.0 0.61 9.8 0.0 1.8 2 0 0 2 2 2 0 PP-loop family Poxvirus PF06227.12 gi|294496222|ref|YP_003542715.1| - 0.0017 18.2 0.3 0.0028 17.4 0.3 1.4 1 0 0 1 1 1 1 dsDNA Poxvirus DUF3294 PF07957.11 gi|294496222|ref|YP_003542715.1| - 0.0095 15.7 0.5 0.012 15.4 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3294) YycH PF07435.11 gi|294496222|ref|YP_003542715.1| - 0.035 13.1 0.9 0.64 8.9 0.0 2.0 1 1 1 2 2 2 0 YycH protein OCD_Mu_crystall PF02423.15 gi|294496223|ref|YP_003542716.1| - 3.3e-111 371.2 0.7 4.1e-111 370.9 0.7 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|294496223|ref|YP_003542716.1| - 1.2e-05 25.4 0.0 2.4e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.22 gi|294496223|ref|YP_003542716.1| - 0.0021 18.9 0.0 0.0041 17.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|294496223|ref|YP_003542716.1| - 0.05 13.9 0.1 0.58 10.4 0.0 2.5 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|294496223|ref|YP_003542716.1| - 0.079 13.2 0.1 0.2 11.9 0.1 1.8 1 0 0 1 1 1 0 TrkA-N domain DUF5616 PF18481.1 gi|294496224|ref|YP_003542717.1| - 1.7e-46 158.1 0.6 2.5e-46 157.5 0.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|294496224|ref|YP_003542717.1| - 2.1e-23 81.8 0.4 3.2e-23 81.1 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF434) TrbI PF03743.14 gi|294496224|ref|YP_003542717.1| - 0.088 12.6 0.1 0.14 12.0 0.1 1.3 1 0 0 1 1 1 0 Bacterial conjugation TrbI-like protein TrkH PF02386.16 gi|294496225|ref|YP_003542718.1| - 1.4e-51 175.5 23.3 1.1e-49 169.3 23.3 2.1 1 1 0 1 1 1 1 Cation transport protein TrkA_N PF02254.18 gi|294496226|ref|YP_003542719.1| - 2.6e-29 101.8 3.5 8.9e-29 100.1 1.5 2.3 2 1 0 3 3 3 1 TrkA-N domain TrkA_C PF02080.21 gi|294496226|ref|YP_003542719.1| - 5.5e-09 35.7 0.0 3e-08 33.4 0.0 2.2 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_10 PF13460.6 gi|294496226|ref|YP_003542719.1| - 1.3e-08 35.0 0.1 1.6e-08 34.7 0.1 1.2 1 0 0 1 1 1 1 NAD(P)H-binding F420_oxidored PF03807.17 gi|294496226|ref|YP_003542719.1| - 1.4e-08 35.2 1.1 4.2e-08 33.7 1.0 1.9 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|294496226|ref|YP_003542719.1| - 4.9e-08 33.1 0.3 9.1e-08 32.3 0.2 1.5 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|294496226|ref|YP_003542719.1| - 9.1e-08 32.5 0.3 1.9e-07 31.5 0.3 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Epimerase PF01370.21 gi|294496226|ref|YP_003542719.1| - 2.8e-05 23.7 0.1 3.9e-05 23.2 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_2 PF03446.15 gi|294496226|ref|YP_003542719.1| - 3e-05 24.2 0.3 6.3e-05 23.2 0.1 1.7 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|294496226|ref|YP_003542719.1| - 3.5e-05 23.8 0.9 5.8e-05 23.0 0.9 1.4 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|294496226|ref|YP_003542719.1| - 5.2e-05 23.5 0.4 0.00019 21.7 0.1 1.9 1 1 1 2 2 2 1 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|294496226|ref|YP_003542719.1| - 0.0002 22.2 0.1 0.00064 20.5 0.1 1.7 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold adh_short PF00106.25 gi|294496226|ref|YP_003542719.1| - 0.00026 20.5 0.2 0.00048 19.6 0.2 1.4 1 1 0 1 1 1 1 short chain dehydrogenase ApbA PF02558.16 gi|294496226|ref|YP_003542719.1| - 0.0003 20.4 0.1 0.00048 19.8 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|294496226|ref|YP_003542719.1| - 0.0023 17.2 0.1 0.0028 17.0 0.1 1.3 1 1 0 1 1 1 1 FAD binding domain ThiF PF00899.21 gi|294496226|ref|YP_003542719.1| - 0.0042 16.5 5.0 0.55 9.6 0.3 2.7 2 1 1 3 3 3 2 ThiF family NmrA PF05368.13 gi|294496226|ref|YP_003542719.1| - 0.0042 16.7 0.1 0.0068 16.0 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family HI0933_like PF03486.14 gi|294496226|ref|YP_003542719.1| - 0.0067 15.2 0.1 0.0082 14.9 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein Semialdhyde_dh PF01118.24 gi|294496226|ref|YP_003542719.1| - 0.0078 16.7 0.1 0.037 14.4 0.1 2.0 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 gi|294496226|ref|YP_003542719.1| - 0.0084 16.1 0.1 1.4 8.9 0.0 2.4 2 1 0 2 2 2 1 Zinc-binding dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|294496226|ref|YP_003542719.1| - 0.0095 15.9 0.2 0.035 14.1 0.2 2.1 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.6 gi|294496226|ref|YP_003542719.1| - 0.012 16.2 0.0 0.026 15.0 0.0 1.8 1 1 0 1 1 1 0 XdhC Rossmann domain KR PF08659.10 gi|294496226|ref|YP_003542719.1| - 0.012 15.6 0.1 0.02 14.8 0.1 1.4 1 0 0 1 1 1 0 KR domain Pyr_redox_2 PF07992.14 gi|294496226|ref|YP_003542719.1| - 0.028 13.6 0.3 0.049 12.9 0.3 1.4 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3Beta_HSD PF01073.19 gi|294496226|ref|YP_003542719.1| - 0.03 13.3 0.2 0.048 12.7 0.1 1.5 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short_C2 PF13561.6 gi|294496226|ref|YP_003542719.1| - 0.058 12.9 0.4 0.087 12.4 0.4 1.2 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Pyr_redox PF00070.27 gi|294496226|ref|YP_003542719.1| - 0.082 13.5 0.2 0.32 11.6 0.1 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase LpxI_N PF17930.1 gi|294496226|ref|YP_003542719.1| - 0.11 12.4 0.1 0.26 11.2 0.1 1.7 1 1 0 1 1 1 0 LpxI N-terminal domain IlvN PF07991.12 gi|294496226|ref|YP_003542719.1| - 0.12 11.9 0.2 0.23 11.0 0.2 1.6 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DAO PF01266.24 gi|294496226|ref|YP_003542719.1| - 0.16 11.6 0.4 0.36 10.3 0.2 1.7 1 1 1 2 2 2 0 FAD dependent oxidoreductase DUF2325 PF10087.9 gi|294496226|ref|YP_003542719.1| - 0.2 11.8 1.5 1.1 9.4 0.1 2.5 2 1 1 3 3 2 0 Uncharacterized protein conserved in bacteria (DUF2325) B12-binding PF02310.19 gi|294496226|ref|YP_003542719.1| - 0.26 11.3 0.9 0.88 9.6 0.1 2.2 1 1 1 2 2 2 0 B12 binding domain DUF2769 PF10967.8 gi|294496227|ref|YP_003542720.1| - 1.1e-15 58.1 12.8 1.5e-15 57.6 12.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) Glu_synthase PF01645.17 gi|294496228|ref|YP_003542721.1| - 1.2e-95 320.8 0.1 1.5e-95 320.5 0.1 1.1 1 0 0 1 1 1 1 Conserved region in glutamate synthase Rubredoxin PF00301.20 gi|294496228|ref|YP_003542721.1| - 5.2e-14 52.0 7.6 1.9e-13 50.2 3.9 2.5 2 0 0 2 2 2 1 Rubredoxin FMN_dh PF01070.18 gi|294496228|ref|YP_003542721.1| - 4.9e-08 32.4 0.4 1.4e-06 27.6 0.2 2.7 3 0 0 3 3 3 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|294496228|ref|YP_003542721.1| - 9.5e-08 31.4 0.1 1.6e-07 30.7 0.1 1.3 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain zf-RING_7 PF02591.15 gi|294496228|ref|YP_003542721.1| - 0.00055 20.1 2.8 0.023 14.9 0.1 3.7 4 0 0 4 4 3 1 C4-type zinc ribbon domain Elf1 PF05129.13 gi|294496228|ref|YP_003542721.1| - 0.0012 18.9 1.3 0.0022 18.0 0.0 2.1 2 0 0 2 2 1 1 Transcription elongation factor Elf1 like NMO PF03060.15 gi|294496228|ref|YP_003542721.1| - 0.0033 16.9 0.2 0.0059 16.0 0.2 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase Cys_rich_KTR PF14205.6 gi|294496228|ref|YP_003542721.1| - 0.011 15.5 0.4 1 9.2 0.0 2.7 2 0 0 2 2 2 0 Cysteine-rich KTR Ribul_P_3_epim PF00834.19 gi|294496228|ref|YP_003542721.1| - 0.016 14.6 0.1 3.2 7.1 0.0 2.3 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family His_biosynth PF00977.21 gi|294496228|ref|YP_003542721.1| - 0.018 14.5 0.0 0.029 13.8 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein Vps36-NZF-N PF16988.5 gi|294496228|ref|YP_003542721.1| - 0.019 14.3 0.9 0.019 14.3 0.9 1.9 2 0 0 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain ThiG PF05690.14 gi|294496228|ref|YP_003542721.1| - 0.046 13.0 0.1 0.076 12.3 0.1 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG LrgB PF04172.16 gi|294496228|ref|YP_003542721.1| - 0.07 12.6 0.3 0.07 12.6 0.3 1.6 2 0 0 2 2 2 0 LrgB-like family Ima1_N PF09779.9 gi|294496228|ref|YP_003542721.1| - 0.087 13.7 0.4 0.18 12.7 0.4 1.5 1 0 0 1 1 1 0 Ima1 N-terminal domain zinc_ribbon_2 PF13240.6 gi|294496228|ref|YP_003542721.1| - 0.096 12.4 0.1 0.27 11.0 0.1 1.8 1 0 0 1 1 1 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.12 gi|294496228|ref|YP_003542721.1| - 0.13 12.6 0.7 10 6.5 0.0 3.4 3 0 0 3 3 3 0 Zinc-binding domain of primase-helicase Lar_restr_allev PF14354.6 gi|294496228|ref|YP_003542721.1| - 0.23 11.9 2.3 0.23 11.9 0.4 2.0 2 0 0 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|294496228|ref|YP_003542721.1| - 0.93 9.7 10.5 1.9 8.7 3.2 2.8 1 1 1 2 2 2 0 Zinc ribbon domain zf-Di19 PF05605.12 gi|294496228|ref|YP_003542721.1| - 1.2 9.5 5.6 3.5 8.0 3.9 2.6 2 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-ribbon_3 PF13248.6 gi|294496228|ref|YP_003542721.1| - 3.9 7.0 9.5 0.56 9.7 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain zf_CopZ PF18423.1 gi|294496228|ref|YP_003542721.1| - 4.3 7.4 6.3 17 5.5 0.3 3.2 3 0 0 3 3 3 0 Zinc binding domain RimK PF08443.11 gi|294496229|ref|YP_003542722.1| - 2.6e-30 105.4 0.0 7e-30 104.0 0.0 1.7 1 1 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|294496229|ref|YP_003542722.1| - 3.4e-12 46.1 0.0 8.7e-12 44.8 0.0 1.6 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain Rimk_N PF18030.1 gi|294496229|ref|YP_003542722.1| - 3.3e-10 40.2 0.0 6.1e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 RimK PreATP-grasp domain ATP-grasp_3 PF02655.14 gi|294496229|ref|YP_003542722.1| - 1.2e-08 35.2 0.1 4.9e-08 33.2 0.1 1.9 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|294496229|ref|YP_003542722.1| - 1e-05 24.9 0.0 0.00012 21.4 0.0 2.4 1 1 0 1 1 1 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 gi|294496229|ref|YP_003542722.1| - 3.8e-05 23.1 0.1 0.036 13.3 0.0 2.5 3 0 0 3 3 3 2 Sugar-transfer associated ATP-grasp ATPgrasp_Ter PF15632.6 gi|294496229|ref|YP_003542722.1| - 0.071 12.9 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_5 PF13549.6 gi|294496229|ref|YP_003542722.1| - 0.19 11.1 0.0 1.6 8.2 0.0 2.1 1 1 1 2 2 2 0 ATP-grasp domain PTH2 PF01981.16 gi|294496230|ref|YP_003542723.1| - 5e-41 139.7 0.1 5.5e-41 139.5 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Transglut_core PF01841.19 gi|294496231|ref|YP_003542724.1| - 0.00014 22.3 0.0 0.00027 21.3 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF2917 PF11142.8 gi|294496231|ref|YP_003542724.1| - 0.075 12.4 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2917) TruD PF01142.18 gi|294496232|ref|YP_003542725.1| - 4.1e-161 536.4 0.2 4.7e-161 536.3 0.2 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) CTP_synth_N PF06418.14 gi|294496233|ref|YP_003542726.1| - 2e-125 417.5 0.2 3.2e-125 416.8 0.2 1.3 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|294496233|ref|YP_003542726.1| - 1.3e-55 188.1 0.0 2.7e-55 187.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|294496233|ref|YP_003542726.1| - 2.7e-06 27.3 0.0 9.9e-06 25.4 0.0 1.9 2 0 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|294496233|ref|YP_003542726.1| - 0.00044 20.3 0.0 0.0011 19.0 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DJ-1_PfpI PF01965.24 gi|294496233|ref|YP_003542726.1| - 0.049 13.4 0.1 0.88 9.4 0.0 2.6 2 1 0 2 2 2 0 DJ-1/PfpI family Wyosine_form PF08608.12 gi|294496233|ref|YP_003542726.1| - 0.059 13.7 0.0 0.31 11.4 0.0 2.1 2 0 0 2 2 2 0 Wyosine base formation Transket_pyr PF02779.24 gi|294496233|ref|YP_003542726.1| - 0.07 12.8 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Transketolase, pyrimidine binding domain MeaB PF03308.16 gi|294496233|ref|YP_003542726.1| - 0.081 11.9 0.5 0.15 11.0 0.2 1.5 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_31 PF13614.6 gi|294496233|ref|YP_003542726.1| - 0.17 11.8 0.1 0.5 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain Phage_holin_5_2 PF16079.5 gi|294496234|ref|YP_003542727.1| - 0.039 14.3 0.4 0.084 13.2 0.4 1.5 1 0 0 1 1 1 0 Phage holin family Hol44, in holin superfamily V Trm112p PF03966.16 gi|294496235|ref|YP_003542728.1| - 9.7e-10 38.9 1.4 3e-09 37.3 1.4 1.7 1 1 0 1 1 1 1 Trm112p-like protein Elf1 PF05129.13 gi|294496235|ref|YP_003542728.1| - 0.0012 18.8 0.0 0.0013 18.8 0.0 1.0 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|294496235|ref|YP_003542728.1| - 0.003 17.9 0.2 0.0033 17.8 0.2 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-RRPl_C4 PF17026.5 gi|294496235|ref|YP_003542728.1| - 0.18 11.9 0.7 0.33 11.1 0.7 1.6 1 1 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type DUF1451 PF07295.11 gi|294496235|ref|YP_003542728.1| - 0.27 11.3 1.1 0.92 9.5 0.1 1.9 1 1 0 2 2 2 0 Zinc-ribbon containing domain Gate PF07670.14 gi|294496236|ref|YP_003542729.1| - 0.00015 22.0 20.5 0.0084 16.4 1.7 3.0 2 2 1 3 3 3 2 Nucleoside recognition FpoO PF10621.9 gi|294496237|ref|YP_003542730.1| - 2.8e-54 182.1 6.4 3.1e-54 182.0 6.4 1.0 1 0 0 1 1 1 1 F420H2 dehydrogenase subunit FpoO DNTTIP1_dimer PF18192.1 gi|294496237|ref|YP_003542730.1| - 0.065 13.6 0.0 4.1 7.8 0.1 2.4 2 1 0 2 2 2 0 DNTTIP1 dimerisation domain Fer4_16 PF13484.6 gi|294496237|ref|YP_003542730.1| - 1.3 10.0 12.7 24 5.9 8.4 2.7 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Cys_box PF17869.1 gi|294496237|ref|YP_003542730.1| - 8.3 6.6 10.3 1.9 8.7 1.1 2.3 2 0 0 2 2 2 0 Anosmin cysteine rich domain Proton_antipo_M PF00361.20 gi|294496238|ref|YP_003542731.1| - 5.1e-73 245.8 29.5 5.1e-73 245.8 29.5 2.1 2 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|294496238|ref|YP_003542731.1| - 0.0061 16.6 2.9 0.012 15.7 0.6 2.8 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus GET2 PF08690.10 gi|294496238|ref|YP_003542731.1| - 0.071 12.8 2.8 0.15 11.7 2.8 1.5 1 0 0 1 1 1 0 GET complex subunit GET2 Tmemb_18A PF09771.9 gi|294496238|ref|YP_003542731.1| - 8.6 6.8 9.9 2.1 8.8 1.8 3.2 3 0 0 3 3 3 0 Transmembrane protein 188 Proton_antipo_M PF00361.20 gi|294496239|ref|YP_003542732.1| - 4.5e-67 226.3 32.8 4.5e-67 226.3 32.8 1.7 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|294496240|ref|YP_003542733.1| - 1.4e-75 254.3 23.0 1.4e-75 254.3 23.0 2.1 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|294496240|ref|YP_003542733.1| - 4.8e-18 65.0 1.5 4.8e-18 65.0 1.5 5.3 6 0 0 6 6 6 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_C PF01010.19 gi|294496240|ref|YP_003542733.1| - 5.3e-05 23.0 1.5 0.00016 21.4 1.5 1.8 1 0 0 1 1 1 1 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Oxidored_q2 PF00420.24 gi|294496241|ref|YP_003542734.1| - 1.7e-25 88.7 4.2 1.8e-25 88.5 4.2 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BMC PF00936.19 gi|294496241|ref|YP_003542734.1| - 0.047 13.7 0.2 0.065 13.2 0.2 1.2 1 0 0 1 1 1 0 BMC domain Oxidored_q3 PF00499.20 gi|294496242|ref|YP_003542735.1| - 1.3e-11 44.4 1.9 1.5e-11 44.2 1.9 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Oxidored_q3 PF00499.20 gi|294496243|ref|YP_003542736.1| - 1.4e-20 73.5 11.2 1.4e-20 73.5 11.2 1.8 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.6 gi|294496243|ref|YP_003542736.1| - 0.8 9.9 19.6 0.22 11.7 14.8 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4040) Peptidase_U4 PF03419.13 gi|294496243|ref|YP_003542736.1| - 1.5 8.0 8.8 1.8 7.8 8.8 1.0 1 0 0 1 1 1 0 Sporulation factor SpoIIGA Fer4 PF00037.27 gi|294496244|ref|YP_003542737.1| - 1.3e-12 46.9 15.0 2e-06 27.3 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294496244|ref|YP_003542737.1| - 7.7e-10 39.2 10.7 1.1e-09 38.7 10.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294496244|ref|YP_003542737.1| - 2.5e-09 37.2 7.0 3.7e-09 36.6 7.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294496244|ref|YP_003542737.1| - 5.9e-08 33.5 6.6 0.0045 17.9 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|294496244|ref|YP_003542737.1| - 8e-08 32.3 12.0 1.8e-07 31.2 12.2 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294496244|ref|YP_003542737.1| - 1.5e-07 31.1 8.9 6.3e-05 22.8 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|294496244|ref|YP_003542737.1| - 8.1e-07 29.1 11.9 1.4e-06 28.3 11.9 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|294496244|ref|YP_003542737.1| - 4.6e-06 27.0 10.8 1.5e-05 25.4 10.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294496244|ref|YP_003542737.1| - 0.00024 21.1 16.2 0.0074 16.3 7.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|294496244|ref|YP_003542737.1| - 0.00029 21.6 10.0 0.035 15.0 3.7 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294496244|ref|YP_003542737.1| - 0.00056 20.2 13.5 0.047 14.2 4.9 2.3 1 1 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294496244|ref|YP_003542737.1| - 0.00061 20.3 12.3 0.0058 17.2 12.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|294496244|ref|YP_003542737.1| - 0.0049 17.6 9.4 0.027 15.2 2.1 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|294496244|ref|YP_003542737.1| - 0.013 16.0 5.4 0.013 16.0 5.4 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|294496244|ref|YP_003542737.1| - 0.032 15.2 2.4 0.032 15.2 2.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|294496244|ref|YP_003542737.1| - 0.084 13.1 10.1 9.2 6.5 10.1 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain NADHdh PF00146.21 gi|294496245|ref|YP_003542738.1| - 2e-107 358.9 22.4 2.5e-107 358.6 22.4 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.19 gi|294496246|ref|YP_003542739.1| - 1.1e-85 287.0 0.1 5.7e-84 281.4 0.1 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|294496246|ref|YP_003542739.1| - 7.3e-05 21.8 0.0 9.7e-05 21.4 0.0 1.2 1 0 0 1 1 1 1 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 gi|294496247|ref|YP_003542740.1| - 5.8e-35 120.6 0.0 8.3e-35 120.1 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RNase_H_2 PF13482.6 gi|294496247|ref|YP_003542740.1| - 0.0019 18.2 0.0 0.0026 17.8 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily Oxidored_q6 PF01058.22 gi|294496248|ref|YP_003542741.1| - 1.8e-22 79.6 0.0 2.7e-22 79.0 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.19 gi|294496249|ref|YP_003542742.1| - 1.1e-31 108.8 1.7 1.1e-31 108.8 1.7 1.6 2 0 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Strabismus PF06638.11 gi|294496249|ref|YP_003542742.1| - 0.23 10.1 1.6 0.27 9.8 1.6 1.1 1 0 0 1 1 1 0 Strabismus protein TF_Zn_Ribbon PF08271.12 gi|294496250|ref|YP_003542743.1| - 0.00015 21.2 9.9 0.23 11.0 0.1 3.5 3 0 0 3 3 3 2 TFIIB zinc-binding DUF4441 PF14536.6 gi|294496250|ref|YP_003542743.1| - 0.0012 19.0 0.1 0.0032 17.6 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4441) zf-piccolo PF05715.13 gi|294496250|ref|YP_003542743.1| - 0.0074 16.4 4.0 1.2 9.3 0.9 2.6 2 0 0 2 2 2 2 Piccolo Zn-finger zf-Di19 PF05605.12 gi|294496250|ref|YP_003542743.1| - 0.0086 16.4 0.3 6.8 7.1 0.0 2.6 2 0 0 2 2 2 2 Drought induced 19 protein (Di19), zinc-binding zf-ACC PF17848.1 gi|294496250|ref|YP_003542743.1| - 0.075 13.1 8.5 2 8.6 0.1 3.7 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain DZR PF12773.7 gi|294496250|ref|YP_003542743.1| - 0.085 12.9 7.4 0.16 12.0 0.1 3.1 2 2 0 2 2 2 0 Double zinc ribbon YhfH PF14149.6 gi|294496250|ref|YP_003542743.1| - 0.11 12.5 8.8 21 5.2 0.0 3.8 3 0 0 3 3 3 0 YhfH-like protein zf-ribbon_3 PF13248.6 gi|294496250|ref|YP_003542743.1| - 0.17 11.3 11.3 0.92 9.0 0.1 3.6 4 0 0 4 4 4 0 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|294496250|ref|YP_003542743.1| - 0.61 9.9 0.1 0.61 9.9 0.1 3.8 5 0 0 5 5 5 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|294496250|ref|YP_003542743.1| - 1 9.3 5.2 36 4.4 0.6 3.4 3 0 0 3 3 3 0 Putative transposase DNA-binding domain NRDD PF13597.6 gi|294496250|ref|YP_003542743.1| - 1.5 7.5 7.9 1.9 7.2 7.9 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf_UBZ PF18439.1 gi|294496250|ref|YP_003542743.1| - 1.9 8.1 9.7 2.7 7.7 0.1 3.5 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger eIF-5_eIF-2B PF01873.17 gi|294496250|ref|YP_003542743.1| - 3.4 7.6 8.1 0.14 12.0 0.8 2.4 1 1 1 3 3 3 0 Domain found in IF2B/IF5 Ribosomal_S17 PF00366.20 gi|294496250|ref|YP_003542743.1| - 8.2 6.6 6.9 0.79 9.9 0.8 2.5 2 1 1 3 3 3 0 Ribosomal protein S17 DUF22 PF01629.16 gi|294496251|ref|YP_003542744.1| - 2.2e-37 126.9 0.2 3e-37 126.5 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF22 Fer4 PF00037.27 gi|294496252|ref|YP_003542745.1| - 4.4e-13 48.5 13.4 8.9e-07 28.5 2.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|294496252|ref|YP_003542745.1| - 2e-09 37.5 25.8 1.4e-06 28.4 13.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|294496252|ref|YP_003542745.1| - 8.6e-09 35.4 11.1 1e-08 35.1 11.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294496252|ref|YP_003542745.1| - 2.3e-08 33.6 13.4 5.4e-05 23.0 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|294496252|ref|YP_003542745.1| - 4.2e-08 33.1 15.7 4.6e-05 23.6 4.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294496252|ref|YP_003542745.1| - 2.2e-07 31.4 26.2 3.2e-05 24.4 15.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294496252|ref|YP_003542745.1| - 8.9e-07 29.8 12.3 0.0014 19.5 3.1 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|294496252|ref|YP_003542745.1| - 1.2e-06 28.3 11.7 0.0038 17.2 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294496252|ref|YP_003542745.1| - 1.9e-05 25.1 10.1 0.013 16.0 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294496252|ref|YP_003542745.1| - 2.1e-05 24.5 26.6 0.00075 19.6 15.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|294496252|ref|YP_003542745.1| - 0.0033 17.9 15.2 0.033 14.6 2.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|294496252|ref|YP_003542745.1| - 0.0036 18.1 12.4 0.064 14.1 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|294496252|ref|YP_003542745.1| - 0.0047 17.4 10.9 0.27 11.8 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|294496252|ref|YP_003542745.1| - 0.045 14.7 17.7 0.51 11.4 5.2 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain zf-C2H2_11 PF16622.5 gi|294496252|ref|YP_003542745.1| - 1.4 8.7 9.2 0.75 9.6 0.7 2.2 2 0 0 2 2 2 0 zinc-finger C2H2-type Fer4_18 PF13746.6 gi|294496252|ref|YP_003542745.1| - 3.4 7.9 11.4 8.2 6.7 11.4 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Amino_oxidase PF01593.24 gi|294496253|ref|YP_003542746.1| - 1.1e-13 51.3 0.0 1.7e-13 50.7 0.0 1.3 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|294496253|ref|YP_003542746.1| - 8.2e-11 42.0 0.2 2.4e-10 40.5 0.2 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|294496253|ref|YP_003542746.1| - 3.1e-06 26.5 0.3 0.003 16.7 0.1 2.5 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.24 gi|294496253|ref|YP_003542746.1| - 4.9e-05 23.1 0.2 0.027 14.0 0.0 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|294496253|ref|YP_003542746.1| - 0.0017 17.6 2.7 0.072 12.3 0.1 3.3 3 1 1 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|294496253|ref|YP_003542746.1| - 0.002 16.9 0.5 0.031 13.0 0.2 2.4 2 1 1 3 3 3 1 HI0933-like protein Pyr_redox PF00070.27 gi|294496253|ref|YP_003542746.1| - 0.068 13.7 2.7 5.4 7.6 0.2 3.2 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|294496253|ref|YP_003542746.1| - 0.091 11.8 1.0 1.1 8.3 0.1 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|294496253|ref|YP_003542746.1| - 0.15 11.3 0.5 0.26 10.5 0.5 1.4 1 0 0 1 1 1 0 FAD binding domain MCRA PF06100.11 gi|294496253|ref|YP_003542746.1| - 0.19 10.5 0.1 0.34 9.6 0.1 1.4 1 0 0 1 1 1 0 MCRA family FAD_oxidored PF12831.7 gi|294496253|ref|YP_003542746.1| - 0.19 11.0 0.1 0.32 10.3 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase FapA PF03961.13 gi|294496254|ref|YP_003542747.1| - 0.0054 15.4 14.0 0.0096 14.6 13.9 1.4 1 1 0 1 1 1 1 Flagellar Assembly Protein A MatE PF01554.18 gi|294496254|ref|YP_003542747.1| - 0.056 13.1 10.1 0.13 11.9 10.1 1.6 1 0 0 1 1 1 0 MatE YwiC PF14256.6 gi|294496254|ref|YP_003542747.1| - 0.42 10.9 15.5 0.42 10.9 10.8 2.3 1 1 1 2 2 2 0 YwiC-like protein DUF3007 PF11460.8 gi|294496254|ref|YP_003542747.1| - 0.51 10.6 0.1 0.51 10.6 0.1 2.3 2 1 0 3 3 3 0 Protein of unknown function (DUF3007) Adipogenin PF15202.6 gi|294496254|ref|YP_003542747.1| - 5.5 7.1 6.2 30 4.7 2.4 2.5 2 0 0 2 2 2 0 Adipogenin Maf PF02545.14 gi|294496255|ref|YP_003542748.1| - 2.7e-52 176.9 0.0 3.1e-52 176.8 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein Radical_SAM PF04055.21 gi|294496256|ref|YP_003542749.1| - 1.5e-11 45.0 0.1 9.8e-11 42.3 0.1 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Radical_SAM PF04055.21 gi|294496257|ref|YP_003542750.1| - 6.4e-13 49.4 0.2 1.1e-12 48.6 0.2 1.4 1 0 0 1 1 1 1 Radical SAM superfamily HlyD_D23 PF16576.5 gi|294496257|ref|YP_003542750.1| - 0.024 13.9 0.0 0.05 12.8 0.0 1.6 1 1 0 1 1 1 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion Fer4_14 PF13394.6 gi|294496257|ref|YP_003542750.1| - 0.031 14.4 0.2 0.21 11.7 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|294496258|ref|YP_003542751.1| - 4.2e-18 66.3 0.2 6e-18 65.8 0.2 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|294496258|ref|YP_003542751.1| - 0.026 14.7 0.2 0.088 12.9 0.0 2.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain CofC PF01983.16 gi|294496259|ref|YP_003542752.1| - 9.2e-49 165.6 0.5 1.1e-48 165.3 0.5 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like CutA1 PF03091.15 gi|294496260|ref|YP_003542753.1| - 8.2e-33 112.2 0.1 9.1e-33 112.1 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein DEP PF00610.21 gi|294496260|ref|YP_003542753.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) FAD_binding_3 PF01494.19 gi|294496261|ref|YP_003542754.1| - 1.7e-16 60.4 1.5 4e-13 49.3 1.0 3.0 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|294496261|ref|YP_003542754.1| - 2e-11 43.6 2.0 1.4e-06 27.7 0.2 2.6 2 1 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 gi|294496261|ref|YP_003542754.1| - 2.6e-10 40.2 1.9 8.2e-10 38.6 1.9 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|294496261|ref|YP_003542754.1| - 1e-07 31.9 2.2 0.0019 17.9 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|294496261|ref|YP_003542754.1| - 2e-07 30.4 0.0 0.0002 20.5 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.14 gi|294496261|ref|YP_003542754.1| - 7.1e-07 28.3 0.2 3.6e-06 26.0 0.0 2.1 3 0 0 3 3 3 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|294496261|ref|YP_003542754.1| - 1e-05 24.9 1.5 4.5e-05 22.8 1.5 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|294496261|ref|YP_003542754.1| - 1.2e-05 25.5 0.0 3.2e-05 24.1 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|294496261|ref|YP_003542754.1| - 0.00024 20.3 1.3 0.00056 19.1 1.4 1.6 1 1 0 1 1 1 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|294496261|ref|YP_003542754.1| - 0.00089 18.2 0.0 0.65 8.8 0.1 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|294496261|ref|YP_003542754.1| - 0.012 14.9 1.0 0.023 14.0 1.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|294496261|ref|YP_003542754.1| - 0.015 14.6 0.3 0.041 13.1 0.1 1.7 2 0 0 2 2 2 0 Thi4 family SE PF08491.10 gi|294496261|ref|YP_003542754.1| - 0.032 13.3 0.0 0.065 12.3 0.0 1.5 1 0 0 1 1 1 0 Squalene epoxidase Pyr_redox PF00070.27 gi|294496261|ref|YP_003542754.1| - 0.045 14.3 0.2 0.045 14.3 0.2 2.7 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|294496261|ref|YP_003542754.1| - 0.065 12.5 0.4 0.16 11.3 0.1 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.6 gi|294496261|ref|YP_003542754.1| - 0.15 12.5 0.1 0.53 10.8 0.0 1.8 2 1 0 2 2 1 0 XdhC Rossmann domain TrkA_N PF02254.18 gi|294496262|ref|YP_003542755.1| - 8.4e-44 148.5 5.4 3.5e-23 82.1 0.1 2.3 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|294496262|ref|YP_003542755.1| - 3.6e-32 110.0 0.2 1.1e-14 54.0 0.0 2.8 2 0 0 2 2 2 2 TrkA-C domain AlaDh_PNT_C PF01262.21 gi|294496262|ref|YP_003542755.1| - 2.5e-09 36.7 4.7 5.2e-05 22.6 0.2 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|294496262|ref|YP_003542755.1| - 5e-09 36.5 2.4 0.0003 21.2 0.1 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|294496262|ref|YP_003542755.1| - 3.4e-08 33.7 3.1 0.00062 19.8 0.1 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase Pyr_redox_2 PF07992.14 gi|294496262|ref|YP_003542755.1| - 2e-06 27.2 0.5 0.0098 15.2 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|294496262|ref|YP_003542755.1| - 2.9e-06 27.6 4.6 0.013 15.8 0.7 3.4 3 0 0 3 3 3 2 Saccharopine dehydrogenase NADP binding domain Pyr_redox PF00070.27 gi|294496262|ref|YP_003542755.1| - 1.1e-05 25.9 0.7 0.0025 18.3 0.1 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 gi|294496262|ref|YP_003542755.1| - 0.00022 21.7 3.0 0.21 12.2 0.1 3.2 3 0 0 3 3 2 2 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|294496262|ref|YP_003542755.1| - 0.00041 20.3 1.5 0.28 11.1 0.1 3.0 2 1 1 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|294496262|ref|YP_003542755.1| - 0.00047 20.2 0.1 0.47 10.4 0.0 2.4 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_8 PF13450.6 gi|294496262|ref|YP_003542755.1| - 0.00074 19.7 0.2 0.0056 16.9 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|294496262|ref|YP_003542755.1| - 0.00078 19.1 0.3 0.37 10.3 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|294496262|ref|YP_003542755.1| - 0.0011 18.3 0.1 0.015 14.5 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain Castor_Poll_mid PF06241.12 gi|294496262|ref|YP_003542755.1| - 0.004 17.1 0.1 1.8 8.6 0.0 2.6 2 0 0 2 2 2 1 Castor and Pollux, part of voltage-gated ion channel HI0933_like PF03486.14 gi|294496262|ref|YP_003542755.1| - 0.0082 14.9 0.1 0.1 11.3 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein ApbA PF02558.16 gi|294496262|ref|YP_003542755.1| - 0.011 15.4 0.2 1.9 8.2 0.0 2.5 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|294496262|ref|YP_003542755.1| - 0.017 14.7 2.7 3.1 7.3 0.3 3.2 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF1188 PF06690.11 gi|294496262|ref|YP_003542755.1| - 0.02 14.4 4.7 0.14 11.7 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1188) Lycopene_cycl PF05834.12 gi|294496262|ref|YP_003542755.1| - 0.028 13.5 0.3 0.42 9.6 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein XdhC_C PF13478.6 gi|294496262|ref|YP_003542755.1| - 0.061 13.8 0.1 1.9 9.0 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain 2-Hacid_dh_C PF02826.19 gi|294496262|ref|YP_003542755.1| - 0.068 12.5 0.2 3 7.2 0.1 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|294496262|ref|YP_003542755.1| - 0.091 12.0 0.4 0.85 8.8 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase RNase_PH_C PF03725.15 gi|294496262|ref|YP_003542755.1| - 0.1 12.7 1.5 1.4 9.0 0.3 2.8 2 0 0 2 2 2 0 3' exoribonuclease family, domain 2 NmrA PF05368.13 gi|294496262|ref|YP_003542755.1| - 0.12 11.9 1.7 0.6 9.6 0.6 2.2 2 0 0 2 2 2 0 NmrA-like family ThiF PF00899.21 gi|294496262|ref|YP_003542755.1| - 0.17 11.2 0.3 7.6 5.8 0.0 2.6 2 0 0 2 2 2 0 ThiF family DnaJ_C PF01556.18 gi|294496263|ref|YP_003542756.1| - 1e-42 145.7 0.0 1.3e-42 145.4 0.0 1.1 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|294496263|ref|YP_003542756.1| - 1.9e-28 98.4 6.1 1.9e-28 98.4 6.1 1.6 2 0 0 2 2 2 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|294496263|ref|YP_003542756.1| - 5.9e-14 52.2 16.7 1.2e-13 51.2 16.7 1.6 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|294496263|ref|YP_003542756.1| - 0.0013 18.7 18.9 0.18 11.8 6.0 3.4 1 1 2 3 3 3 2 Tryptophan RNA-binding attenuator protein inhibitory protein FdhE PF04216.12 gi|294496263|ref|YP_003542756.1| - 0.032 14.1 0.9 0.071 13.0 0.9 1.5 1 1 0 1 1 1 0 Protein involved in formate dehydrogenase formation Ntox4 PF15541.6 gi|294496263|ref|YP_003542756.1| - 0.11 12.9 0.1 0.67 10.3 0.0 2.3 2 0 0 2 2 2 0 Bacterial toxin 4 DZR PF12773.7 gi|294496263|ref|YP_003542756.1| - 0.45 10.6 11.6 38 4.4 11.6 2.3 1 1 0 1 1 1 0 Double zinc ribbon Cytochrom_c3_2 PF14537.6 gi|294496263|ref|YP_003542756.1| - 1.5 9.3 5.4 4.2 7.9 5.4 1.8 1 1 0 1 1 1 0 Cytochrome c3 TackOD1 PF18551.1 gi|294496263|ref|YP_003542756.1| - 2.2 7.9 4.8 20 4.8 0.1 2.2 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 HSP70 PF00012.20 gi|294496264|ref|YP_003542757.1| - 1.1e-249 829.7 18.9 2.5e-247 821.9 18.9 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|294496264|ref|YP_003542757.1| - 3.6e-18 65.5 3.5 7.7e-18 64.4 3.5 1.5 1 1 0 1 1 1 1 MreB/Mbl protein FGGY_C PF02782.16 gi|294496264|ref|YP_003542757.1| - 0.0026 17.5 0.0 0.0068 16.2 0.0 1.7 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain Raco_middle PF17651.1 gi|294496264|ref|YP_003542757.1| - 0.029 14.1 0.1 0.19 11.4 0.0 2.3 2 0 0 2 2 2 0 RACo middle region FtsA PF14450.6 gi|294496264|ref|YP_003542757.1| - 0.038 14.4 8.9 5.3 7.5 0.3 4.1 3 2 0 3 3 3 0 Cell division protein FtsA DUF3347 PF11827.8 gi|294496264|ref|YP_003542757.1| - 0.67 10.1 10.9 4.4 7.4 7.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3347) Vfa1 PF08432.10 gi|294496264|ref|YP_003542757.1| - 2.8 8.2 8.1 6 7.1 8.1 1.5 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 SMBP PF16785.5 gi|294496264|ref|YP_003542757.1| - 5.6 7.2 17.0 0.45 10.8 9.4 2.7 3 0 0 3 3 3 0 Small metal-binding protein GrpE PF01025.19 gi|294496265|ref|YP_003542758.1| - 1.2e-58 197.4 6.4 1.5e-58 197.1 6.4 1.0 1 0 0 1 1 1 1 GrpE Spc29 PF17082.5 gi|294496265|ref|YP_003542758.1| - 0.02 14.8 0.6 0.023 14.5 0.6 1.2 1 0 0 1 1 1 0 Spindle Pole Component 29 DUF996 PF06195.13 gi|294496266|ref|YP_003542759.1| - 0.022 15.1 7.8 0.022 15.1 7.8 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF996) DUF2304 PF10066.9 gi|294496266|ref|YP_003542759.1| - 1.4 9.2 12.4 1.1 9.5 6.7 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) Peptidase_U4 PF03419.13 gi|294496266|ref|YP_003542759.1| - 1.4 8.1 16.9 2.4e+02 0.8 16.9 2.0 1 1 0 1 1 1 0 Sporulation factor SpoIIGA DUF2070 PF09843.9 gi|294496266|ref|YP_003542759.1| - 4.7 5.4 12.6 5.9 5.1 12.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF202 PF02656.15 gi|294496266|ref|YP_003542759.1| - 9.1 6.8 13.6 3 8.4 4.0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF202) SLATT_6 PF18169.1 gi|294496266|ref|YP_003542759.1| - 9.7 5.8 8.4 2.7 7.5 2.4 2.0 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 6 ATP-grasp_3 PF02655.14 gi|294496267|ref|YP_003542760.1| - 6.5e-40 136.8 0.0 9.8e-40 136.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|294496267|ref|YP_003542760.1| - 5.7e-06 26.1 0.0 1.2e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.6 gi|294496267|ref|YP_003542760.1| - 0.00024 20.5 0.0 0.014 14.7 0.0 2.3 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp preATP-grasp_3 PF18301.1 gi|294496267|ref|YP_003542760.1| - 0.00026 21.2 0.0 0.00049 20.3 0.0 1.4 1 0 0 1 1 1 1 pre ATP-grasp 3 domain Dala_Dala_lig_C PF07478.13 gi|294496267|ref|YP_003542760.1| - 0.16 11.5 0.0 0.41 10.2 0.0 1.8 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus Dot_icm_IcmQ PF09475.10 gi|294496267|ref|YP_003542760.1| - 0.18 11.3 0.0 1.8 8.0 0.0 2.0 2 0 0 2 2 2 0 Dot/Icm secretion system protein (dot_icm_IcmQ) Hydantoinase_A PF01968.18 gi|294496268|ref|YP_003542761.1| - 1.9e-27 96.3 0.2 1.9e-27 96.3 0.2 1.4 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|294496268|ref|YP_003542761.1| - 0.0027 16.4 0.0 0.13 10.8 0.0 2.2 2 0 0 2 2 2 2 MutL protein StbA PF06406.11 gi|294496268|ref|YP_003542761.1| - 0.058 12.6 0.1 0.54 9.4 0.0 2.1 1 1 1 2 2 2 0 StbA protein P-II PF00543.22 gi|294496268|ref|YP_003542761.1| - 0.14 12.8 0.0 0.27 11.8 0.0 1.4 1 0 0 1 1 1 0 Nitrogen regulatory protein P-II Hydant_A_N PF05378.13 gi|294496268|ref|YP_003542761.1| - 0.17 11.6 1.4 9 6.0 0.0 2.8 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region AA_kinase PF00696.28 gi|294496269|ref|YP_003542762.1| - 3.2e-11 43.3 0.0 0.00013 21.7 0.0 2.1 1 1 1 2 2 2 2 Amino acid kinase family Herpes_teg_N PF04843.12 gi|294496269|ref|YP_003542762.1| - 0.032 13.9 0.0 0.063 13.0 0.0 1.4 1 0 0 1 1 1 0 Herpesvirus tegument protein, N-terminal conserved region DUF1610 PF07754.11 gi|294496270|ref|YP_003542763.1| - 7.1e-07 29.1 7.7 6.4e-05 22.8 2.6 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-CHY PF05495.12 gi|294496270|ref|YP_003542763.1| - 0.0019 18.7 11.3 0.06 13.8 10.7 2.0 1 1 0 1 1 1 1 CHY zinc finger DZR PF12773.7 gi|294496270|ref|YP_003542763.1| - 0.0021 18.0 14.0 0.055 13.5 14.1 2.2 1 1 0 1 1 1 1 Double zinc ribbon C1_2 PF03107.16 gi|294496270|ref|YP_003542763.1| - 0.0044 17.3 11.5 0.11 12.9 3.2 2.1 1 1 1 2 2 2 1 C1 domain TF_Zn_Ribbon PF08271.12 gi|294496270|ref|YP_003542763.1| - 0.013 14.9 13.6 1.2 8.7 9.2 3.0 2 1 0 2 2 2 0 TFIIB zinc-binding tRNA-synt_1g PF09334.11 gi|294496270|ref|YP_003542763.1| - 0.014 14.1 3.4 0.015 14.0 3.4 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (M) zinc_ribbon_2 PF13240.6 gi|294496270|ref|YP_003542763.1| - 0.024 14.4 17.8 0.92 9.3 4.3 3.7 2 2 1 3 3 3 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|294496270|ref|YP_003542763.1| - 0.027 14.5 10.8 0.076 13.0 10.8 1.7 1 1 0 1 1 1 0 zinc-ribbons zf-HIT PF04438.16 gi|294496270|ref|YP_003542763.1| - 0.028 14.3 14.5 0.21 11.5 5.5 2.9 1 1 1 2 2 2 0 HIT zinc finger zf-C3HC4_3 PF13920.6 gi|294496270|ref|YP_003542763.1| - 0.041 13.7 9.4 0.4 10.6 0.4 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Rhodanese_C PF12368.8 gi|294496270|ref|YP_003542763.1| - 0.056 13.8 9.3 0.061 13.7 9.3 1.1 1 0 0 1 1 1 0 Rhodanase C-terminal zf-UBP PF02148.19 gi|294496270|ref|YP_003542763.1| - 0.06 13.7 1.0 0.06 13.7 1.0 2.4 2 1 1 3 3 3 0 Zn-finger in ubiquitin-hydrolases and other protein Zn_Tnp_IS91 PF14319.6 gi|294496270|ref|YP_003542763.1| - 0.087 12.9 10.8 0.17 11.9 10.8 1.5 1 1 0 1 1 1 0 Transposase zinc-binding domain OrfB_Zn_ribbon PF07282.11 gi|294496270|ref|YP_003542763.1| - 0.15 12.0 11.1 0.3 11.0 6.1 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Spt4 PF06093.13 gi|294496270|ref|YP_003542763.1| - 0.16 12.1 0.5 0.16 12.1 0.5 2.0 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger zf-C3HC4_4 PF15227.6 gi|294496270|ref|YP_003542763.1| - 0.19 11.9 10.6 0.21 11.8 1.2 2.2 2 0 0 2 2 2 0 zinc finger of C3HC4-type, RING HypA PF01155.19 gi|294496270|ref|YP_003542763.1| - 0.2 11.7 11.5 0.26 11.3 1.0 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_C2H2_10 PF18414.1 gi|294496270|ref|YP_003542763.1| - 0.21 11.1 11.3 0.59 9.7 0.4 3.2 4 0 0 4 4 3 0 C2H2 type zinc-finger zf-ribbon_3 PF13248.6 gi|294496270|ref|YP_003542763.1| - 0.23 10.9 12.6 1.5 8.3 0.5 3.4 3 1 0 3 3 3 0 zinc-ribbon domain zf-RING_5 PF14634.6 gi|294496270|ref|YP_003542763.1| - 0.27 11.2 12.0 1.3 9.0 4.1 2.2 2 0 0 2 2 2 0 zinc-RING finger domain Nudix_N_2 PF14803.6 gi|294496270|ref|YP_003542763.1| - 0.28 11.1 14.8 2.1 8.3 4.0 3.2 1 1 1 2 2 2 0 Nudix N-terminal zf-ACC PF17848.1 gi|294496270|ref|YP_003542763.1| - 0.3 11.2 17.4 24 5.1 9.4 3.9 3 1 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zf_UBZ PF18439.1 gi|294496270|ref|YP_003542763.1| - 0.3 10.7 11.3 0.5 10.0 0.1 3.4 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger NMD3 PF04981.13 gi|294496270|ref|YP_003542763.1| - 0.64 9.4 8.4 0.68 9.3 8.4 1.0 1 0 0 1 1 1 0 NMD3 family zinc_ribbon_10 PF10058.9 gi|294496270|ref|YP_003542763.1| - 0.65 9.8 13.8 0.12 12.1 7.8 2.5 1 1 2 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF1272 PF06906.11 gi|294496270|ref|YP_003542763.1| - 0.72 10.0 11.7 11 6.3 11.7 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-tcix PF14952.6 gi|294496270|ref|YP_003542763.1| - 0.91 9.2 13.5 8.5 6.1 2.6 3.1 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding UPF0547 PF10571.9 gi|294496270|ref|YP_003542763.1| - 1 9.5 13.6 5 7.3 0.2 3.3 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 PolC_DP2 PF03833.13 gi|294496270|ref|YP_003542763.1| - 1.1 7.1 6.7 1.2 6.9 6.7 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-Mss51 PF13824.6 gi|294496270|ref|YP_003542763.1| - 1.2 9.3 12.0 39 4.4 12.0 2.3 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin_2 PF18073.1 gi|294496270|ref|YP_003542763.1| - 1.3 8.8 0.1 1.3 8.8 0.1 3.9 3 1 0 3 3 3 0 Rubredoxin metal binding domain C1_1 PF00130.22 gi|294496270|ref|YP_003542763.1| - 2.1 8.3 11.2 1.8 8.5 6.3 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Rdx PF10262.9 gi|294496270|ref|YP_003542763.1| - 2.1 8.6 5.2 0.81 9.9 1.7 2.1 1 1 1 2 2 2 0 Rdx family Prok-RING_1 PF14446.6 gi|294496270|ref|YP_003542763.1| - 2.2 8.3 13.1 9.9 6.2 5.4 2.5 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Tnp_zf-ribbon_2 PF13842.6 gi|294496270|ref|YP_003542763.1| - 2.2 9.2 14.9 9.5 7.1 4.4 3.4 1 1 2 3 3 3 0 DDE_Tnp_1-like zinc-ribbon zf-B_box PF00643.24 gi|294496270|ref|YP_003542763.1| - 2.6 8.3 13.5 11 6.3 3.0 3.0 2 1 1 3 3 3 0 B-box zinc finger Zn_ribbon_SprT PF17283.2 gi|294496270|ref|YP_003542763.1| - 2.7 8.0 17.2 4 7.4 2.7 3.3 1 1 1 2 2 2 0 SprT-like zinc ribbon domain RecR PF02132.15 gi|294496270|ref|YP_003542763.1| - 3.7 7.2 13.5 2.8 7.6 2.3 2.4 1 1 1 2 2 2 0 RecR protein zf-TFIIB PF13453.6 gi|294496270|ref|YP_003542763.1| - 4.8 6.6 13.1 32 4.0 0.0 2.9 2 1 0 2 2 2 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.10 gi|294496270|ref|YP_003542763.1| - 5.2 7.3 15.1 6.3 7.0 9.5 2.6 1 1 1 2 2 2 0 Zinc ribbon domain zf-C3HC4 PF00097.25 gi|294496270|ref|YP_003542763.1| - 5.2 7.0 13.2 8.1 6.4 1.1 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) PhnA_Zn_Ribbon PF08274.12 gi|294496270|ref|YP_003542763.1| - 6.8 6.7 15.0 17 5.4 0.9 3.3 2 1 1 3 3 2 0 PhnA Zinc-Ribbon Rubredoxin PF00301.20 gi|294496270|ref|YP_003542763.1| - 8 6.6 12.4 3.7 7.6 0.3 3.2 2 1 0 3 3 3 0 Rubredoxin zf_C2H2_ZHX PF18387.1 gi|294496270|ref|YP_003542763.1| - 8.9 6.0 10.1 13 5.6 0.3 3.6 3 1 1 4 4 4 0 Zinc-fingers and homeoboxes C2H2 finger domain CpXC PF14353.6 gi|294496270|ref|YP_003542763.1| - 9.1 6.4 10.7 12 6.0 1.0 2.6 1 1 1 2 2 2 0 CpXC protein zf-H2C2_2 PF13465.6 gi|294496270|ref|YP_003542763.1| - 9.5 6.8 15.0 4.9 7.7 0.9 3.5 2 2 1 3 3 3 0 Zinc-finger double domain EF1_GNE PF00736.19 gi|294496271|ref|YP_003542764.1| - 6.4e-19 67.9 0.3 7.4e-19 67.7 0.3 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain ThiI PF02568.14 gi|294496272|ref|YP_003542765.1| - 4.7e-58 196.0 0.0 6.2e-58 195.6 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|294496272|ref|YP_003542765.1| - 5.4e-20 72.0 0.0 2.9e-19 69.6 0.0 2.0 2 0 0 2 2 2 1 THUMP domain tRNA_Me_trans PF03054.16 gi|294496272|ref|YP_003542765.1| - 1.6e-05 23.9 0.0 3e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase QueC PF06508.13 gi|294496272|ref|YP_003542765.1| - 3.3e-05 23.5 0.0 0.028 13.9 0.0 2.4 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|294496272|ref|YP_003542765.1| - 0.023 13.8 0.0 0.039 13.1 0.0 1.4 1 0 0 1 1 1 0 NAD synthase A2L_zn_ribbon PF08792.10 gi|294496273|ref|YP_003542766.1| - 2.4e-05 23.9 2.7 2.9e-05 23.6 2.7 1.1 1 0 0 1 1 1 1 A2L zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|294496273|ref|YP_003542766.1| - 0.0037 17.2 0.4 0.004 17.1 0.4 1.2 1 0 0 1 1 1 1 zinc-ribbons DZR PF12773.7 gi|294496273|ref|YP_003542766.1| - 0.03 14.3 0.6 0.04 13.9 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.6 gi|294496273|ref|YP_003542766.1| - 0.13 11.6 4.0 0.38 10.1 4.0 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger Toprim_4 PF13662.6 gi|294496274|ref|YP_003542767.1| - 8.4e-06 26.2 0.0 2.1e-05 24.9 0.0 1.7 1 1 0 1 1 1 1 Toprim domain Toprim PF01751.22 gi|294496274|ref|YP_003542767.1| - 0.00081 19.6 0.1 0.0075 16.5 0.1 2.3 1 1 0 1 1 1 1 Toprim domain zf-C4_ClpX PF06689.13 gi|294496275|ref|YP_003542768.1| - 0.0035 17.2 0.2 0.0058 16.5 0.2 1.4 1 0 0 1 1 1 1 ClpX C4-type zinc finger HTH_12 PF08461.10 gi|294496275|ref|YP_003542768.1| - 0.075 13.0 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain AMP-binding PF00501.28 gi|294496276|ref|YP_003542769.1| - 7.7e-16 57.7 0.0 1e-15 57.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Sulphotransf PF09037.10 gi|294496276|ref|YP_003542769.1| - 0.062 12.8 0.1 0.81 9.2 0.0 2.3 2 0 0 2 2 2 0 Stf0 sulphotransferase SIS_2 PF13580.6 gi|294496276|ref|YP_003542769.1| - 0.17 11.9 0.0 0.54 10.3 0.0 1.8 1 1 1 2 2 2 0 SIS domain Acylphosphatase PF00708.18 gi|294496277|ref|YP_003542770.1| - 1.7e-27 95.6 0.0 1.9e-27 95.5 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase BLUF PF04940.12 gi|294496277|ref|YP_003542770.1| - 0.079 13.1 0.0 0.083 13.0 0.0 1.2 1 0 0 1 1 1 0 Sensors of blue-light using FAD tRNA-Thr_ED PF08915.11 gi|294496278|ref|YP_003542771.1| - 8.2e-53 178.1 0.2 1.5e-52 177.3 0.2 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|294496278|ref|YP_003542771.1| - 6.9e-20 71.0 1.5 1.7e-19 69.8 1.5 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|294496278|ref|YP_003542771.1| - 1.2e-14 54.7 0.5 2e-14 54.0 0.5 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) AI-2E_transport PF01594.16 gi|294496279|ref|YP_003542772.1| - 2.2e-38 132.2 44.1 2.7e-38 131.9 44.1 1.0 1 0 0 1 1 1 1 AI-2E family transporter PetG PF02529.15 gi|294496279|ref|YP_003542772.1| - 3.5 7.6 8.6 1.3 9.0 0.5 3.2 3 0 0 3 3 3 0 Cytochrome B6-F complex subunit 5 PAPS_reduct PF01507.19 gi|294496280|ref|YP_003542773.1| - 1.5e-39 135.8 0.0 2.2e-39 135.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_9 PF13187.6 gi|294496280|ref|YP_003542773.1| - 0.00038 20.6 10.2 0.00038 20.6 10.2 3.0 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|294496280|ref|YP_003542773.1| - 0.0016 19.0 10.8 0.0016 19.0 10.8 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|294496280|ref|YP_003542773.1| - 0.0017 18.5 9.7 0.0017 18.5 9.7 3.5 4 1 0 4 4 4 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294496280|ref|YP_003542773.1| - 0.036 14.2 15.0 0.22 11.6 15.1 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain NAD_synthase PF02540.17 gi|294496280|ref|YP_003542773.1| - 0.041 13.0 0.0 0.068 12.3 0.0 1.2 1 0 0 1 1 1 0 NAD synthase ATP_bind_3 PF01171.20 gi|294496280|ref|YP_003542773.1| - 0.077 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 PP-loop family Fer4 PF00037.27 gi|294496280|ref|YP_003542773.1| - 0.53 10.2 23.3 0.18 11.7 3.7 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|294496280|ref|YP_003542773.1| - 2.6 9.0 15.2 2.5 9.0 2.3 3.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294496280|ref|YP_003542773.1| - 9 6.6 21.3 1.8 8.8 3.2 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|294496281|ref|YP_003542774.1| - 1.6e-43 147.0 1.6 2.5e-43 146.4 1.6 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 gi|294496281|ref|YP_003542774.1| - 1.6e-37 129.4 3.9 2.1e-37 129.0 3.9 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|294496281|ref|YP_003542774.1| - 1.2e-13 51.0 3.1 7.7e-08 31.9 0.5 3.5 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|294496281|ref|YP_003542774.1| - 1.9e-13 50.8 8.6 5.9e-08 33.2 2.1 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|294496281|ref|YP_003542774.1| - 1.8e-09 37.7 0.9 1.2e-08 35.1 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|294496281|ref|YP_003542774.1| - 4.1e-08 33.6 0.3 0.00082 19.8 0.1 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|294496281|ref|YP_003542774.1| - 3.4e-07 29.8 10.0 0.00041 19.7 4.8 2.8 2 1 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|294496281|ref|YP_003542774.1| - 4.5e-06 26.8 1.6 0.094 12.8 0.1 4.1 4 0 0 4 4 4 2 Shikimate / quinate 5-dehydrogenase DAO PF01266.24 gi|294496281|ref|YP_003542774.1| - 5.8e-06 26.1 8.7 0.00014 21.6 2.3 3.2 3 1 1 4 4 4 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|294496281|ref|YP_003542774.1| - 7.4e-06 25.4 0.0 7.4e-06 25.4 0.0 2.7 3 0 0 3 3 3 1 Thi4 family HI0933_like PF03486.14 gi|294496281|ref|YP_003542774.1| - 7.4e-06 24.9 0.6 7.4e-06 24.9 0.6 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|294496281|ref|YP_003542774.1| - 8.4e-06 25.1 0.4 8.4e-06 25.1 0.4 2.9 2 1 1 3 3 3 1 FAD binding domain GIDA PF01134.22 gi|294496281|ref|YP_003542774.1| - 1.6e-05 24.2 5.4 0.00024 20.3 0.2 3.0 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|294496281|ref|YP_003542774.1| - 3.2e-05 23.5 7.8 8e-05 22.2 0.7 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|294496281|ref|YP_003542774.1| - 4.2e-05 23.0 1.3 0.00013 21.4 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain Amino_oxidase PF01593.24 gi|294496281|ref|YP_003542774.1| - 0.00058 19.3 0.4 0.00058 19.3 0.4 1.6 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase 2-Hacid_dh_C PF02826.19 gi|294496281|ref|YP_003542774.1| - 0.0012 18.3 0.5 1.6 8.0 0.0 2.5 3 0 0 3 3 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|294496281|ref|YP_003542774.1| - 0.0015 19.0 6.9 0.16 12.6 0.4 3.7 3 1 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent PALP PF00291.25 gi|294496281|ref|YP_003542774.1| - 0.002 17.6 1.0 2 7.7 0.1 3.2 3 1 1 4 4 4 1 Pyridoxal-phosphate dependent enzyme 3HCDH_N PF02737.18 gi|294496281|ref|YP_003542774.1| - 0.0099 15.8 4.4 0.094 12.6 0.7 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FMO-like PF00743.19 gi|294496281|ref|YP_003542774.1| - 0.02 13.3 0.0 1.3 7.4 0.0 2.1 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like NAD_binding_9 PF13454.6 gi|294496281|ref|YP_003542774.1| - 0.022 14.7 0.8 0.16 11.9 0.5 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|294496281|ref|YP_003542774.1| - 0.026 13.6 0.9 0.026 13.6 0.9 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein Fer4_18 PF13746.6 gi|294496281|ref|YP_003542774.1| - 0.027 14.7 0.2 0.093 12.9 0.2 1.9 1 0 0 1 1 1 0 4Fe-4S dicluster domain ELFV_dehydrog PF00208.21 gi|294496281|ref|YP_003542774.1| - 0.028 14.1 0.4 0.4 10.4 0.0 2.2 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase THF_DHG_CYH_C PF02882.19 gi|294496281|ref|YP_003542774.1| - 0.03 13.7 0.9 5.6 6.3 0.2 3.2 3 0 0 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain K_oxygenase PF13434.6 gi|294496281|ref|YP_003542774.1| - 0.036 13.2 0.9 4.8 6.2 0.0 2.9 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Fer4_7 PF12838.7 gi|294496281|ref|YP_003542774.1| - 0.04 14.5 0.9 0.04 14.5 0.9 2.4 2 1 0 2 2 1 0 4Fe-4S dicluster domain TrkA_N PF02254.18 gi|294496281|ref|YP_003542774.1| - 0.05 13.9 3.2 7.5 6.8 0.2 3.1 3 1 0 3 3 3 0 TrkA-N domain XdhC_C PF13478.6 gi|294496281|ref|YP_003542774.1| - 0.051 14.1 0.3 0.48 10.9 0.0 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain UDPG_MGDP_dh_N PF03721.14 gi|294496281|ref|YP_003542774.1| - 0.066 12.8 5.3 0.45 10.1 0.1 3.4 3 1 1 4 4 4 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF4147 PF13660.6 gi|294496281|ref|YP_003542774.1| - 0.084 12.4 1.2 8.8 5.8 0.2 2.8 2 1 0 3 3 3 0 Domain of unknown function (DUF4147) ApbA PF02558.16 gi|294496281|ref|YP_003542774.1| - 0.14 11.8 2.5 0.53 9.9 1.0 2.3 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA ThiF PF00899.21 gi|294496281|ref|YP_003542774.1| - 0.26 10.6 2.8 13 5.0 0.1 3.0 3 0 0 3 3 3 0 ThiF family NAD_binding_2 PF03446.15 gi|294496281|ref|YP_003542774.1| - 0.3 11.2 3.2 1.7 8.8 0.0 3.1 3 1 1 4 4 4 0 NAD binding domain of 6-phosphogluconate dehydrogenase Trp_halogenase PF04820.14 gi|294496281|ref|YP_003542774.1| - 0.51 9.1 3.0 0.25 10.2 0.3 1.7 2 0 0 2 2 2 0 Tryptophan halogenase Rossmann-like PF10727.9 gi|294496281|ref|YP_003542774.1| - 1.2 9.0 4.6 2.1 8.2 0.1 2.8 3 0 0 3 3 3 0 Rossmann-like domain AdoHcyase_NAD PF00670.21 gi|294496281|ref|YP_003542774.1| - 3 7.9 5.6 14 5.7 0.1 3.1 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Fer4_4 PF12800.7 gi|294496281|ref|YP_003542774.1| - 7.1 7.4 12.2 0.83 10.3 3.3 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain DHODB_Fe-S_bind PF10418.9 gi|294496282|ref|YP_003542775.1| - 1e-11 44.4 4.0 2e-11 43.5 4.0 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|294496282|ref|YP_003542775.1| - 4.4e-08 33.7 0.0 1.1e-07 32.4 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase NAD-binding domain AdoMet_Synthase PF01941.19 gi|294496284|ref|YP_003542777.1| - 2.1e-177 589.9 0.2 2.3e-177 589.7 0.2 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) HisG PF01634.18 gi|294496285|ref|YP_003542778.1| - 5.1e-51 172.8 0.5 7.2e-51 172.3 0.5 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|294496285|ref|YP_003542778.1| - 1.1e-25 89.6 0.5 2.4e-25 88.4 0.2 1.8 2 0 0 2 2 2 1 HisG, C-terminal domain TANGO2 PF05742.12 gi|294496285|ref|YP_003542778.1| - 0.17 11.9 0.0 0.23 11.5 0.0 1.2 1 0 0 1 1 1 0 Transport and Golgi organisation 2 His_biosynth PF00977.21 gi|294496286|ref|YP_003542779.1| - 3.6e-75 252.4 0.6 4.1e-75 252.2 0.6 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|294496286|ref|YP_003542779.1| - 1.6e-09 37.3 0.1 0.00053 19.2 0.0 2.1 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 gi|294496286|ref|YP_003542779.1| - 3.9e-09 36.1 0.2 2.6e-05 23.6 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase ThiG PF05690.14 gi|294496286|ref|YP_003542779.1| - 5.1e-06 26.0 0.5 0.0039 16.5 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|294496286|ref|YP_003542779.1| - 5.6e-06 26.0 2.4 2.1e-05 24.1 0.5 2.0 1 1 1 2 2 2 1 Nitronate monooxygenase IMPDH PF00478.25 gi|294496286|ref|YP_003542779.1| - 1.7e-05 24.0 0.7 0.019 13.9 0.2 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|294496286|ref|YP_003542779.1| - 5.9e-05 22.3 0.2 0.11 11.6 0.0 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase PcrB PF01884.17 gi|294496286|ref|YP_003542779.1| - 9.4e-05 22.0 0.2 0.0058 16.1 0.0 2.1 2 0 0 2 2 2 1 PcrB family NanE PF04131.14 gi|294496286|ref|YP_003542779.1| - 0.00013 21.2 0.2 0.16 11.1 0.1 2.1 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.17 gi|294496286|ref|YP_003542779.1| - 0.0002 20.7 0.7 0.0011 18.3 0.1 2.0 2 0 0 2 2 2 1 Thiamine monophosphate synthase G3P_antiterm PF04309.12 gi|294496286|ref|YP_003542779.1| - 0.00037 20.0 0.8 0.042 13.3 0.1 2.3 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator IGPS PF00218.21 gi|294496286|ref|YP_003542779.1| - 0.0021 17.3 0.2 0.014 14.6 0.0 2.0 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.20 gi|294496286|ref|YP_003542779.1| - 0.0026 16.7 0.3 0.21 10.4 0.0 2.1 2 0 0 2 2 2 1 Tryptophan synthase alpha chain DUF561 PF04481.12 gi|294496286|ref|YP_003542779.1| - 0.01 15.0 0.1 0.016 14.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Glu_synthase PF01645.17 gi|294496286|ref|YP_003542779.1| - 0.023 13.9 2.0 0.16 11.1 0.3 2.5 2 1 1 3 3 3 0 Conserved region in glutamate synthase IGPD PF00475.18 gi|294496287|ref|YP_003542780.1| - 2.5e-60 203.0 3.0 3.5e-60 202.5 3.0 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase tRNA_NucTran2_2 PF13735.6 gi|294496287|ref|YP_003542780.1| - 0.21 11.6 0.0 0.49 10.4 0.0 1.6 2 0 0 2 2 2 0 tRNA nucleotidyltransferase domain 2 putative MutS_V PF00488.21 gi|294496288|ref|YP_003542781.1| - 2.9e-08 33.9 0.0 5.5e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 MutS domain V Spc42p PF11544.8 gi|294496288|ref|YP_003542781.1| - 0.00058 19.8 0.1 0.0017 18.3 0.0 1.8 2 0 0 2 2 2 1 Spindle pole body component Spc42p AAA PF00004.29 gi|294496288|ref|YP_003542781.1| - 0.0012 19.3 0.1 0.0087 16.5 0.0 2.4 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) HHH_5 PF14520.6 gi|294496288|ref|YP_003542781.1| - 0.0014 19.2 0.2 0.01 16.4 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_16 PF13191.6 gi|294496288|ref|YP_003542781.1| - 0.042 14.2 0.9 12 6.3 0.5 4.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|294496288|ref|YP_003542781.1| - 0.06 13.9 0.1 7.9 6.9 0.0 2.7 3 0 0 3 3 3 0 AAA domain HHH_2 PF12826.7 gi|294496288|ref|YP_003542781.1| - 0.12 12.5 0.0 0.35 11.0 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF4130 PF13566.6 gi|294496289|ref|YP_003542782.1| - 3.9e-13 49.7 0.0 5.7e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4130 Radical_SAM PF04055.21 gi|294496290|ref|YP_003542783.1| - 7.6e-07 29.6 0.2 1.7e-06 28.5 0.2 1.7 1 1 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.7 gi|294496290|ref|YP_003542783.1| - 1.9e-05 24.8 0.0 5e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|294496290|ref|YP_003542783.1| - 0.00087 19.0 0.0 0.002 17.9 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif dDENN PF03455.19 gi|294496290|ref|YP_003542783.1| - 0.042 13.8 0.0 0.09 12.8 0.0 1.5 1 0 0 1 1 1 0 dDENN domain HHH_5 PF14520.6 gi|294496290|ref|YP_003542783.1| - 0.054 14.1 0.0 0.14 12.7 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain OrfB_Zn_ribbon PF07282.11 gi|294496290|ref|YP_003542783.1| - 0.61 10.1 4.2 2.7 8.0 0.0 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain HTH_20 PF12840.7 gi|294496291|ref|YP_003542784.1| - 3.5e-13 49.4 0.1 6.1e-13 48.6 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|294496291|ref|YP_003542784.1| - 1.9e-12 46.9 1.5 3.3e-12 46.1 1.5 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|294496291|ref|YP_003542784.1| - 9.9e-08 31.4 0.1 1.7e-07 30.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|294496291|ref|YP_003542784.1| - 5.7e-06 26.1 0.0 9.1e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|294496291|ref|YP_003542784.1| - 3.4e-05 23.7 0.2 5.7e-05 23.0 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|294496291|ref|YP_003542784.1| - 0.00021 21.2 0.1 0.00036 20.4 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|294496291|ref|YP_003542784.1| - 0.0012 18.6 0.1 0.005 16.6 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|294496291|ref|YP_003542784.1| - 0.003 17.4 0.2 0.0053 16.6 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|294496291|ref|YP_003542784.1| - 0.0039 16.9 0.0 0.0084 15.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.17 gi|294496291|ref|YP_003542784.1| - 0.0047 16.8 0.2 0.0089 15.9 0.1 1.5 2 0 0 2 2 1 1 HxlR-like helix-turn-helix Fe_dep_repress PF01325.19 gi|294496291|ref|YP_003542784.1| - 0.0051 17.0 0.1 0.0093 16.1 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DprA_WH PF17782.1 gi|294496291|ref|YP_003542784.1| - 0.008 16.3 0.1 0.012 15.7 0.1 1.3 1 0 0 1 1 1 1 DprA winged helix domain HTH_45 PF14947.6 gi|294496291|ref|YP_003542784.1| - 0.0096 15.9 0.0 0.058 13.4 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DUF4423 PF14394.6 gi|294496291|ref|YP_003542784.1| - 0.014 15.1 0.1 0.02 14.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_1 PF00126.27 gi|294496291|ref|YP_003542784.1| - 0.02 14.8 0.0 0.035 14.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Rrf2 PF02082.20 gi|294496291|ref|YP_003542784.1| - 0.022 15.1 0.1 0.041 14.2 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator ArsR PF09824.9 gi|294496291|ref|YP_003542784.1| - 0.023 14.3 0.0 0.034 13.7 0.0 1.2 1 0 0 1 1 1 0 ArsR transcriptional regulator RepL PF05732.11 gi|294496291|ref|YP_003542784.1| - 0.039 13.4 0.0 0.065 12.7 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) FUR PF01475.19 gi|294496291|ref|YP_003542784.1| - 0.04 14.1 0.4 0.091 12.9 0.4 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family HTH_26 PF13443.6 gi|294496291|ref|YP_003542784.1| - 0.053 14.0 0.0 0.1 13.1 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain UPF0122 PF04297.14 gi|294496291|ref|YP_003542784.1| - 0.064 13.5 0.0 0.096 12.9 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4_2 PF08281.12 gi|294496291|ref|YP_003542784.1| - 0.12 12.1 0.1 0.25 11.0 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 TnsD PF15978.5 gi|294496291|ref|YP_003542784.1| - 0.13 11.3 0.1 0.14 11.1 0.1 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_23 PF13384.6 gi|294496291|ref|YP_003542784.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain AP_endonuc_2 PF01261.24 gi|294496292|ref|YP_003542785.1| - 1.9e-18 66.7 0.4 8.3e-18 64.6 0.4 1.8 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF5132 PF17195.4 gi|294496292|ref|YP_003542785.1| - 0.069 13.2 0.3 0.17 12.0 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF5132) ADP_PFK_GK PF04587.15 gi|294496293|ref|YP_003542786.1| - 1.6e-98 330.1 0.0 1.8e-98 330.0 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region PAS_3 PF08447.12 gi|294496293|ref|YP_003542786.1| - 0.081 13.2 0.0 2.3 8.6 0.0 2.2 2 0 0 2 2 2 0 PAS fold ADP_PFK_GK PF04587.15 gi|294496294|ref|YP_003542787.1| - 1e-115 386.8 0.0 1.1e-115 386.6 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region DUF2290 PF10053.9 gi|294496294|ref|YP_003542787.1| - 0.076 12.5 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2290) PfkB PF00294.24 gi|294496294|ref|YP_003542787.1| - 0.089 12.1 0.1 0.22 10.8 0.0 1.6 2 0 0 2 2 2 0 pfkB family carbohydrate kinase ArgJ PF01960.18 gi|294496295|ref|YP_003542788.1| - 1.5e-136 455.1 8.3 1.8e-136 454.8 8.3 1.0 1 0 0 1 1 1 1 ArgJ family CBS PF00571.28 gi|294496296|ref|YP_003542789.1| - 4.2e-32 110.4 3.1 6.9e-15 55.2 0.2 2.6 2 1 1 3 3 3 2 CBS domain Semialdhyde_dh PF01118.24 gi|294496297|ref|YP_003542790.1| - 5.7e-33 113.9 0.0 9.5e-33 113.2 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|294496297|ref|YP_003542790.1| - 7.4e-20 71.8 0.0 9.8e-20 71.4 0.0 1.1 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|294496297|ref|YP_003542790.1| - 0.0078 16.3 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.22 gi|294496297|ref|YP_003542790.1| - 0.02 15.7 0.0 0.057 14.2 0.0 1.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|294496297|ref|YP_003542790.1| - 0.04 14.5 0.0 0.077 13.6 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Epimerase PF01370.21 gi|294496297|ref|YP_003542790.1| - 0.17 11.3 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family PDH PF02153.17 gi|294496297|ref|YP_003542790.1| - 0.18 10.8 0.0 0.28 10.2 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase Nuc_deoxyrib_tr PF05014.15 gi|294496298|ref|YP_003542791.1| - 6.3e-28 97.4 0.0 7.5e-28 97.2 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Nuc_deoxyri_tr2 PF15891.5 gi|294496298|ref|YP_003542791.1| - 3.7e-20 72.2 0.0 4.4e-20 72.0 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase like TIR_2 PF13676.6 gi|294496298|ref|YP_003542791.1| - 0.00016 22.3 0.0 0.00021 21.9 0.0 1.2 1 0 0 1 1 1 1 TIR domain NAD_binding_2 PF03446.15 gi|294496298|ref|YP_003542791.1| - 0.0062 16.7 0.0 0.0089 16.2 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase DUF4406 PF14359.6 gi|294496298|ref|YP_003542791.1| - 0.023 15.1 0.0 0.033 14.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4406) LDcluster4 PF18306.1 gi|294496298|ref|YP_003542791.1| - 0.11 12.1 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 SLOG cluster4 family AMMECR1 PF01871.17 gi|294496299|ref|YP_003542792.1| - 1.6e-50 171.0 0.0 1.8e-50 170.8 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 PGK PF00162.19 gi|294496300|ref|YP_003542793.1| - 6e-107 357.9 0.0 6.8e-107 357.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase AAA_26 PF13500.6 gi|294496301|ref|YP_003542794.1| - 6.1e-34 117.6 0.2 1.1e-33 116.7 0.0 1.5 2 0 0 2 2 2 1 AAA domain DRTGG PF07085.12 gi|294496301|ref|YP_003542794.1| - 1e-30 105.6 0.4 2.9e-30 104.2 0.4 1.8 1 0 0 1 1 1 1 DRTGG domain CbiA PF01656.23 gi|294496301|ref|YP_003542794.1| - 1.3e-05 25.3 0.3 0.00013 22.0 0.1 2.2 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF4604 PF15377.6 gi|294496301|ref|YP_003542794.1| - 0.31 11.4 0.3 1.1 9.7 0.0 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4604) ATP-grasp_5 PF13549.6 gi|294496302|ref|YP_003542795.1| - 2.1e-79 266.1 0.0 3e-79 265.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|294496302|ref|YP_003542795.1| - 2.2e-55 186.3 3.1 5.3e-55 185.0 0.3 2.9 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|294496302|ref|YP_003542795.1| - 3.9e-28 98.3 0.1 2.1e-27 95.9 0.1 2.4 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|294496302|ref|YP_003542795.1| - 3.9e-14 53.1 0.3 9.5e-14 51.9 0.3 1.7 1 0 0 1 1 1 1 CoA binding domain CPSase_L_D2 PF02786.17 gi|294496302|ref|YP_003542795.1| - 0.11 12.0 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain FMN_red PF03358.15 gi|294496303|ref|YP_003542796.1| - 8.5e-38 129.5 0.0 1.1e-37 129.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|294496303|ref|YP_003542796.1| - 2.5e-12 46.9 0.0 2.9e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_1 PF00258.25 gi|294496303|ref|YP_003542796.1| - 0.0013 19.0 0.0 0.01 16.0 0.0 2.0 1 1 1 2 2 2 1 Flavodoxin Flavodoxin_5 PF12724.7 gi|294496303|ref|YP_003542796.1| - 0.04 14.1 0.0 0.064 13.5 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin domain Fer4_2 PF12797.7 gi|294496303|ref|YP_003542796.1| - 0.27 11.4 2.8 0.51 10.6 2.8 1.4 1 0 0 1 1 1 0 4Fe-4S binding domain PduV-EutP PF10662.9 gi|294496304|ref|YP_003542797.1| - 0.0015 18.3 0.0 0.0016 18.2 0.0 1.1 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation DUF3206 PF11472.8 gi|294496304|ref|YP_003542797.1| - 0.081 12.9 0.0 0.085 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3206) Radical_SAM PF04055.21 gi|294496305|ref|YP_003542798.1| - 4.6e-24 85.7 0.0 4.8e-23 82.4 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|294496305|ref|YP_003542798.1| - 1.2e-12 47.7 0.1 2.4e-12 46.8 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|294496305|ref|YP_003542798.1| - 6.7e-07 29.2 0.0 1.2e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 TRAM domain FBPase_glpX PF03320.13 gi|294496306|ref|YP_003542799.1| - 2.2e-118 394.6 2.8 2.6e-118 394.4 2.8 1.0 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CGI-121 PF08617.10 gi|294496307|ref|YP_003542800.1| - 2.4e-08 34.3 0.0 2.9e-08 34.0 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 FliE PF02049.18 gi|294496307|ref|YP_003542800.1| - 0.017 15.2 0.0 0.033 14.3 0.0 1.4 1 0 0 1 1 1 0 Flagellar hook-basal body complex protein FliE PALP PF00291.25 gi|294496308|ref|YP_003542801.1| - 2.1e-76 257.2 1.2 2.4e-76 257.0 1.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme tRNA-synt_1 PF00133.22 gi|294496309|ref|YP_003542802.1| - 1.2e-62 212.0 1.8 8.3e-43 146.5 0.3 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|294496309|ref|YP_003542802.1| - 7.5e-27 94.1 0.6 9.9e-12 44.3 0.0 3.4 2 1 1 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|294496309|ref|YP_003542802.1| - 2.8e-20 72.8 0.0 5.5e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|294496309|ref|YP_003542802.1| - 1.9e-10 40.6 0.0 8.4e-07 28.6 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|294496309|ref|YP_003542802.1| - 1.2e-08 34.7 0.0 2.5e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1d PF00750.19 gi|294496309|ref|YP_003542802.1| - 0.011 14.7 0.2 0.024 13.6 0.0 1.6 2 0 0 2 2 2 0 tRNA synthetases class I (R) tRNA-synt_1f PF01921.18 gi|294496309|ref|YP_003542802.1| - 0.061 12.2 0.0 0.14 11.0 0.0 1.6 1 0 0 1 1 1 0 tRNA synthetases class I (K) ABC_tran PF00005.27 gi|294496310|ref|YP_003542803.1| - 3.8e-30 105.2 0.1 1.3e-27 97.0 0.0 2.2 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|294496310|ref|YP_003542803.1| - 2.7e-13 50.4 1.2 1.3e-09 38.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|294496310|ref|YP_003542803.1| - 9.5e-10 38.3 0.0 2.9e-06 26.9 0.0 2.4 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|294496310|ref|YP_003542803.1| - 0.00044 20.1 6.1 0.0079 15.9 0.1 2.6 3 0 0 3 3 3 2 AAA ATPase domain AAA PF00004.29 gi|294496310|ref|YP_003542803.1| - 0.00063 20.2 1.2 0.0074 16.7 1.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|294496310|ref|YP_003542803.1| - 0.00078 19.1 0.0 0.068 12.7 0.0 2.9 3 0 0 3 3 3 1 AAA domain NB-ARC PF00931.22 gi|294496310|ref|YP_003542803.1| - 0.0048 16.1 0.3 0.46 9.6 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain AAA_22 PF13401.6 gi|294496310|ref|YP_003542803.1| - 0.0055 17.0 1.0 0.75 10.1 0.0 2.8 2 1 1 3 3 3 1 AAA domain AAA_24 PF13479.6 gi|294496310|ref|YP_003542803.1| - 0.0073 16.1 0.2 0.022 14.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|294496310|ref|YP_003542803.1| - 0.013 15.2 0.0 0.034 13.9 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|294496310|ref|YP_003542803.1| - 0.013 15.2 0.2 5.3 6.7 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein SbcCD_C PF13558.6 gi|294496310|ref|YP_003542803.1| - 0.018 15.3 0.0 0.039 14.2 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|294496310|ref|YP_003542803.1| - 0.024 14.6 0.6 0.088 12.7 0.1 2.0 2 0 0 2 2 2 0 RsgA GTPase AAA_23 PF13476.6 gi|294496310|ref|YP_003542803.1| - 0.027 15.0 0.0 0.027 15.0 0.0 2.1 2 1 0 2 2 2 0 AAA domain TniB PF05621.11 gi|294496310|ref|YP_003542803.1| - 0.1 12.0 0.5 0.99 8.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein NTPase_1 PF03266.15 gi|294496310|ref|YP_003542803.1| - 0.11 12.4 2.1 0.47 10.4 0.1 2.3 2 1 0 2 2 2 0 NTPase CbiQ PF02361.16 gi|294496311|ref|YP_003542804.1| - 1.5e-34 119.5 8.7 2.2e-34 119.0 8.7 1.1 1 0 0 1 1 1 1 Cobalt transport protein CarboxypepD_reg PF13620.6 gi|294496312|ref|YP_003542805.1| - 0.0002 21.5 0.0 0.0003 21.0 0.0 1.3 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain bMG3 PF11974.8 gi|294496312|ref|YP_003542805.1| - 0.003 17.5 0.0 0.0051 16.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial alpha-2-macroglobulin MG3 domain SdrD_B PF17210.3 gi|294496312|ref|YP_003542805.1| - 0.0046 17.2 0.1 0.0083 16.4 0.1 1.4 1 0 0 1 1 1 1 SdrD B-like domain CarbopepD_reg_2 PF13715.6 gi|294496312|ref|YP_003542805.1| - 0.0074 16.3 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 CarboxypepD_reg-like domain EMP24_GP25L PF01105.24 gi|294496312|ref|YP_003542805.1| - 0.86 9.5 4.9 0.33 10.9 1.5 1.8 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD CbiM PF01891.16 gi|294496313|ref|YP_003542806.1| - 4.7e-48 163.8 19.3 5.3e-48 163.6 19.3 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF1422 PF07226.11 gi|294496313|ref|YP_003542806.1| - 0.017 15.1 0.5 0.074 13.1 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1422) Herpes_LMP1 PF05297.11 gi|294496313|ref|YP_003542806.1| - 8.9 5.4 7.6 11 5.1 7.6 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) PGF-CTERM PF18204.1 gi|294496314|ref|YP_003542807.1| - 1.8e-07 30.9 0.1 2.8e-07 30.3 0.1 1.3 1 0 0 1 1 1 1 PGF-CTERM motif DUF1664 PF07889.12 gi|294496314|ref|YP_003542807.1| - 2.3e-05 24.4 3.9 0.077 13.0 0.2 3.1 2 2 0 2 2 2 2 Protein of unknown function (DUF1664) Cluap1 PF10234.9 gi|294496314|ref|YP_003542807.1| - 0.00011 21.8 14.1 0.00074 19.0 3.9 2.3 1 1 1 2 2 2 2 Clusterin-associated protein-1 SKA1 PF07160.12 gi|294496314|ref|YP_003542807.1| - 0.00026 20.9 18.3 0.028 14.3 3.6 3.5 1 1 3 4 4 4 2 Spindle and kinetochore-associated protein 1 CorA PF01544.18 gi|294496314|ref|YP_003542807.1| - 0.0004 19.8 11.4 0.052 12.8 1.1 3.0 1 1 2 3 3 3 2 CorA-like Mg2+ transporter protein DUF4407 PF14362.6 gi|294496314|ref|YP_003542807.1| - 0.0016 17.8 10.4 0.019 14.3 0.6 2.5 1 1 2 3 3 3 2 Domain of unknown function (DUF4407) Spc29 PF17082.5 gi|294496314|ref|YP_003542807.1| - 0.0024 17.8 4.6 0.63 9.9 0.1 2.5 2 2 0 2 2 2 2 Spindle Pole Component 29 HHH_8 PF14716.6 gi|294496314|ref|YP_003542807.1| - 0.0044 17.4 1.4 74 3.8 0.0 5.1 5 2 0 5 5 4 0 Helix-hairpin-helix domain Fzo_mitofusin PF04799.13 gi|294496314|ref|YP_003542807.1| - 0.0058 16.2 1.0 3.5 7.2 0.1 2.7 2 0 0 2 2 2 2 fzo-like conserved region BLOC1_2 PF10046.9 gi|294496314|ref|YP_003542807.1| - 0.0078 16.5 9.8 1.1 9.6 0.4 4.3 1 1 1 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4208 PF13907.6 gi|294496314|ref|YP_003542807.1| - 0.0091 16.4 3.6 21 5.6 0.0 4.3 2 2 1 4 4 4 0 Domain of unknown function (DUF4208) Fib_alpha PF08702.10 gi|294496314|ref|YP_003542807.1| - 0.0091 16.2 7.7 0.69 10.1 0.5 3.3 1 1 3 4 4 4 2 Fibrinogen alpha/beta chain family GldM_N PF12081.8 gi|294496314|ref|YP_003542807.1| - 0.013 15.6 8.8 0.27 11.3 1.4 3.3 1 1 3 4 4 4 0 GldM N-terminal domain Synaptobrevin PF00957.21 gi|294496314|ref|YP_003542807.1| - 0.016 15.0 9.0 1.8 8.4 0.1 5.2 5 1 1 6 6 6 0 Synaptobrevin DUF4874 PF16173.5 gi|294496314|ref|YP_003542807.1| - 0.017 14.8 2.8 2 8.1 0.1 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4874) CLU PF13236.6 gi|294496314|ref|YP_003542807.1| - 0.043 13.6 6.9 1.4 8.7 0.7 2.8 2 2 0 2 2 2 0 Clustered mitochondria BRE1 PF08647.11 gi|294496314|ref|YP_003542807.1| - 0.05 13.7 1.6 3.6 7.7 0.1 2.9 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase Jnk-SapK_ap_N PF09744.9 gi|294496314|ref|YP_003542807.1| - 0.052 13.8 14.5 0.59 10.4 0.9 2.9 1 1 2 3 3 3 0 JNK_SAPK-associated protein-1 DUF4446 PF14584.6 gi|294496314|ref|YP_003542807.1| - 0.059 13.4 2.6 4.9 7.1 0.1 3.3 2 2 0 2 2 2 0 Protein of unknown function (DUF4446) Med9 PF07544.13 gi|294496314|ref|YP_003542807.1| - 0.062 13.4 2.9 4.7 7.4 0.1 3.3 2 2 3 5 5 5 0 RNA polymerase II transcription mediator complex subunit 9 DUF641 PF04859.12 gi|294496314|ref|YP_003542807.1| - 0.066 13.5 3.4 1.2 9.4 0.1 3.0 2 2 2 4 4 4 0 Plant protein of unknown function (DUF641) Syntaxin PF00804.25 gi|294496314|ref|YP_003542807.1| - 0.08 12.6 11.0 2 8.0 0.1 3.9 4 0 0 4 4 4 0 Syntaxin ABC_tran_CTD PF16326.5 gi|294496314|ref|YP_003542807.1| - 0.096 13.0 0.2 0.096 13.0 0.2 4.2 5 0 0 5 5 4 0 ABC transporter C-terminal domain V-SNARE PF05008.15 gi|294496314|ref|YP_003542807.1| - 0.099 13.0 9.8 6.3 7.2 0.1 4.2 4 0 0 4 4 4 0 Vesicle transport v-SNARE protein N-terminus SlyX PF04102.12 gi|294496314|ref|YP_003542807.1| - 0.1 13.2 14.0 0.21 12.2 0.1 3.9 5 0 0 5 5 3 0 SlyX LPP PF04728.13 gi|294496314|ref|YP_003542807.1| - 0.13 12.6 7.9 1.5 9.2 0.9 3.2 2 0 0 2 2 2 0 Lipoprotein leucine-zipper Syntaxin_2 PF14523.6 gi|294496314|ref|YP_003542807.1| - 0.17 12.3 10.9 7.7 6.9 0.1 4.3 3 2 1 4 4 4 0 Syntaxin-like protein EzrA PF06160.12 gi|294496314|ref|YP_003542807.1| - 0.28 9.3 21.3 1 7.4 7.8 2.3 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA Serine_rich PF08824.10 gi|294496314|ref|YP_003542807.1| - 0.28 11.2 10.6 1.4 8.9 2.3 3.0 2 1 1 3 3 3 0 Serine rich protein interaction domain MobC PF05713.11 gi|294496314|ref|YP_003542807.1| - 0.32 11.5 1.6 43 4.7 0.1 3.3 3 0 0 3 3 2 0 Bacterial mobilisation protein (MobC) ADIP PF11559.8 gi|294496314|ref|YP_003542807.1| - 0.46 10.6 5.7 3.9 7.5 0.1 3.1 2 1 1 3 3 3 0 Afadin- and alpha -actinin-Binding Phage_Mu_Gam PF07352.12 gi|294496314|ref|YP_003542807.1| - 0.61 10.0 12.5 1.7 8.5 0.9 3.5 3 2 0 3 3 3 0 Bacteriophage Mu Gam like protein DUF4200 PF13863.6 gi|294496314|ref|YP_003542807.1| - 0.91 9.9 7.8 4.3 7.8 0.4 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) TMPIT PF07851.13 gi|294496314|ref|YP_003542807.1| - 1.1 8.5 8.3 19 4.3 0.4 3.1 1 1 2 3 3 3 0 TMPIT-like protein Syntaxin-6_N PF09177.11 gi|294496314|ref|YP_003542807.1| - 1.2 9.7 14.6 3.1 8.4 0.5 4.2 1 1 1 3 3 3 0 Syntaxin 6, N-terminal TF_AP-2 PF03299.14 gi|294496314|ref|YP_003542807.1| - 1.3 9.0 9.6 3.6 7.5 0.7 3.2 2 1 1 3 3 3 0 Transcription factor AP-2 Fez1 PF06818.15 gi|294496314|ref|YP_003542807.1| - 1.5 9.2 17.8 7.2 7.0 5.5 2.5 1 1 1 2 2 2 0 Fez1 V_ATPase_I PF01496.19 gi|294496314|ref|YP_003542807.1| - 1.8 6.4 13.1 0.7 7.7 2.5 2.3 1 1 0 2 2 2 0 V-type ATPase 116kDa subunit family THOC7 PF05615.13 gi|294496314|ref|YP_003542807.1| - 3.2 8.0 12.2 2.6e+03 -1.4 11.3 3.1 1 1 0 1 1 1 0 Tho complex subunit 7 ACCA PF03255.14 gi|294496314|ref|YP_003542807.1| - 4.4 7.2 10.6 7.6 6.4 0.2 3.6 1 1 4 5 5 5 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ISG65-75 PF11727.8 gi|294496314|ref|YP_003542807.1| - 4.6 6.4 17.4 2.3 7.4 0.8 3.0 2 1 1 3 3 3 0 Invariant surface glycoprotein Golgin_A5 PF09787.9 gi|294496314|ref|YP_003542807.1| - 6.5 6.1 21.8 1.5 8.2 5.6 2.9 1 1 3 4 4 4 0 Golgin subfamily A member 5 ArsR PF09824.9 gi|294496316|ref|YP_003542809.1| - 3.5e-68 228.2 0.1 4e-68 228.0 0.1 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator Sulfolobus_pRN PF05584.11 gi|294496316|ref|YP_003542809.1| - 0.038 14.0 0.0 0.11 12.5 0.0 1.8 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein TRAF_BIRC3_bd PF16673.5 gi|294496316|ref|YP_003542809.1| - 0.09 12.6 0.0 0.21 11.4 0.0 1.7 1 0 0 1 1 1 0 TNF receptor-associated factor BIRC3 binding domain HTH_24 PF13412.6 gi|294496317|ref|YP_003542810.1| - 1.7e-11 43.5 0.3 5.3e-11 41.9 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|294496317|ref|YP_003542810.1| - 2.5e-08 33.7 0.0 5.1e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|294496317|ref|YP_003542810.1| - 1.7e-07 31.1 0.0 3.6e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|294496317|ref|YP_003542810.1| - 1.4e-06 28.1 0.0 4.4e-06 26.5 0.0 1.8 2 0 0 2 2 1 1 MarR family HTH_Crp_2 PF13545.6 gi|294496317|ref|YP_003542810.1| - 7.7e-06 25.8 0.0 2.3e-05 24.3 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|294496317|ref|YP_003542810.1| - 1.8e-05 25.2 0.2 0.00014 22.3 0.0 2.4 3 0 0 3 3 2 1 Winged helix DNA-binding domain HTH_3 PF01381.22 gi|294496317|ref|YP_003542810.1| - 0.00011 22.2 0.1 0.0026 17.8 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix Rrf2 PF02082.20 gi|294496317|ref|YP_003542810.1| - 0.00012 22.3 0.0 0.00035 20.9 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|294496317|ref|YP_003542810.1| - 0.00021 21.4 0.1 0.00071 19.7 0.0 1.9 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|294496317|ref|YP_003542810.1| - 0.00071 19.3 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.6 gi|294496317|ref|YP_003542810.1| - 0.0014 18.6 0.0 0.0031 17.5 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_28 PF13518.6 gi|294496317|ref|YP_003542810.1| - 0.0018 18.4 0.0 0.0043 17.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|294496317|ref|YP_003542810.1| - 0.002 17.9 0.0 0.0044 16.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Mnd1 PF03962.15 gi|294496317|ref|YP_003542810.1| - 0.0039 17.5 0.1 0.11 12.7 0.0 2.4 2 0 0 2 2 2 1 Mnd1 HTH domain HTH_36 PF13730.6 gi|294496317|ref|YP_003542810.1| - 0.0088 16.0 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain RPA_C PF08784.11 gi|294496317|ref|YP_003542810.1| - 0.017 15.7 0.0 0.044 14.4 0.0 1.6 1 0 0 1 1 1 0 Replication protein A C terminal HTH_13 PF11972.8 gi|294496317|ref|YP_003542810.1| - 0.037 14.1 0.0 0.085 12.9 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_AsnC-type PF13404.6 gi|294496317|ref|YP_003542810.1| - 0.039 13.8 0.0 0.12 12.3 0.0 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain GntR PF00392.21 gi|294496317|ref|YP_003542810.1| - 0.043 13.5 0.0 0.098 12.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|294496317|ref|YP_003542810.1| - 0.048 13.5 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HU-DNA_bdg PF14848.6 gi|294496317|ref|YP_003542810.1| - 0.048 13.7 0.4 0.31 11.0 0.2 2.2 1 1 1 2 2 2 0 DNA-binding domain LexA_DNA_bind PF01726.16 gi|294496317|ref|YP_003542810.1| - 0.049 13.4 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain YdaS_antitoxin PF15943.5 gi|294496317|ref|YP_003542810.1| - 0.049 13.5 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT LacI PF00356.21 gi|294496317|ref|YP_003542810.1| - 0.05 13.4 0.0 0.14 11.9 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_10 PF04967.12 gi|294496317|ref|YP_003542810.1| - 0.05 13.4 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain TrmB PF01978.19 gi|294496317|ref|YP_003542810.1| - 0.07 13.0 0.1 0.15 11.9 0.1 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Phage_rep_O PF04492.13 gi|294496317|ref|YP_003542810.1| - 0.074 13.6 0.0 0.15 12.6 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage replication protein O HTH_34 PF13601.6 gi|294496317|ref|YP_003542810.1| - 0.1 12.8 0.1 0.63 10.3 0.0 2.4 2 1 0 2 2 2 0 Winged helix DNA-binding domain MqsR_toxin PF15723.5 gi|294496317|ref|YP_003542810.1| - 0.15 12.5 0.8 3.6 8.0 0.1 3.1 2 2 2 4 4 4 0 Motility quorum-sensing regulator, toxin of MqsA Metallophos_2 PF12850.7 gi|294496318|ref|YP_003542811.1| - 1.9e-27 96.5 0.0 2.3e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|294496318|ref|YP_003542811.1| - 3.1e-05 24.6 2.1 0.0016 19.0 0.4 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase MIF PF01187.18 gi|294496318|ref|YP_003542811.1| - 0.032 14.5 0.0 12 6.2 0.0 2.2 2 0 0 2 2 2 0 Macrophage migration inhibitory factor (MIF) SeqA_N PF17206.3 gi|294496319|ref|YP_003542812.1| - 0.13 11.6 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 SeqA protein N-terminal domain PilS PF08805.11 gi|294496321|ref|YP_003542814.1| - 2.7e-06 27.2 0.9 1.2 9.0 0.0 3.5 3 0 0 3 3 3 3 PilS N terminal HH_signal PF01085.18 gi|294496321|ref|YP_003542814.1| - 0.00039 20.1 4.8 0.42 10.3 0.3 3.5 3 0 0 3 3 3 3 Hedgehog amino-terminal signalling domain DUF4852 PF16144.5 gi|294496321|ref|YP_003542814.1| - 0.065 13.4 0.0 0.17 12.0 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4852) Sld7_N PF18636.1 gi|294496321|ref|YP_003542814.1| - 1.7 9.0 6.9 60 4.0 0.2 3.3 3 0 0 3 3 3 0 Mitochondrial morphogenesis protein SLD7 N-terminal domain Na_H_Exchanger PF00999.21 gi|294496322|ref|YP_003542815.1| - 1.7e-39 135.7 54.1 2.5e-39 135.1 54.1 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|294496322|ref|YP_003542815.1| - 1.5e-27 96.1 0.5 3.7e-27 94.9 0.5 1.6 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|294496322|ref|YP_003542815.1| - 5e-14 51.9 0.1 1.7e-13 50.2 0.1 2.0 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|294496322|ref|YP_003542815.1| - 4.2e-08 33.6 0.2 9.7e-08 32.4 0.2 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|294496322|ref|YP_003542815.1| - 3.3e-05 24.1 0.1 6.9e-05 23.1 0.1 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|294496322|ref|YP_003542815.1| - 0.00019 21.9 0.0 0.00067 20.2 0.0 2.0 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|294496322|ref|YP_003542815.1| - 0.00023 21.4 0.1 0.00077 19.7 0.1 2.0 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|294496322|ref|YP_003542815.1| - 0.00025 20.7 0.2 0.00061 19.4 0.2 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|294496322|ref|YP_003542815.1| - 0.005 16.5 0.0 0.0096 15.6 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NmrA PF05368.13 gi|294496322|ref|YP_003542815.1| - 0.019 14.6 0.1 0.033 13.8 0.1 1.4 1 0 0 1 1 1 0 NmrA-like family XdhC_C PF13478.6 gi|294496322|ref|YP_003542815.1| - 0.03 14.8 0.0 0.062 13.8 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_10 PF13460.6 gi|294496322|ref|YP_003542815.1| - 0.034 14.0 0.1 0.07 13.0 0.1 1.5 1 0 0 1 1 1 0 NAD(P)H-binding 3HCDH_N PF02737.18 gi|294496322|ref|YP_003542815.1| - 0.041 13.8 0.1 0.077 12.9 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|294496322|ref|YP_003542815.1| - 0.09 12.8 0.1 0.17 11.9 0.1 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Epimerase PF01370.21 gi|294496322|ref|YP_003542815.1| - 0.094 12.2 0.1 0.15 11.5 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|294496322|ref|YP_003542815.1| - 0.11 11.8 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain B12-binding PF02310.19 gi|294496323|ref|YP_003542816.1| - 1.4e-26 92.9 0.7 2.1e-26 92.3 0.7 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|294496323|ref|YP_003542816.1| - 6.1e-20 71.4 2.8 9.6e-20 70.8 0.7 2.3 3 0 0 3 3 3 1 B12 binding domain DUF4987 PF16377.5 gi|294496325|ref|YP_003542818.1| - 0.093 12.9 0.1 0.11 12.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function EamA PF00892.20 gi|294496326|ref|YP_003542819.1| - 2e-11 44.2 42.0 1e-05 25.7 15.0 3.3 3 1 0 3 3 3 3 EamA-like transporter family B12-binding PF02310.19 gi|294496327|ref|YP_003542820.1| - 1.5e-22 79.9 1.0 2.5e-22 79.2 1.0 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|294496327|ref|YP_003542820.1| - 4e-20 72.0 0.7 1.3e-19 70.4 0.5 1.9 2 0 0 2 2 2 1 B12 binding domain MTTB PF06253.11 gi|294496328|ref|YP_003542821.1| - 5.6e-27 93.9 0.0 6e-27 93.8 0.0 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) MTTB PF06253.11 gi|294496329|ref|YP_003542822.1| - 1.7e-55 188.0 0.0 2e-55 187.7 0.0 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) RACo_C_ter PF14574.6 gi|294496330|ref|YP_003542823.1| - 1.6e-73 246.9 1.3 4.2e-73 245.6 1.3 1.7 1 1 0 1 1 1 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|294496330|ref|YP_003542823.1| - 4.4e-13 49.2 0.0 1.1e-12 48.0 0.0 1.7 1 0 0 1 1 1 1 RACo middle region Fer4_21 PF14697.6 gi|294496330|ref|YP_003542823.1| - 8e-09 35.5 10.0 1.7e-08 34.5 10.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294496330|ref|YP_003542823.1| - 7.7e-08 32.1 13.3 0.0012 18.8 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294496330|ref|YP_003542823.1| - 1e-07 32.4 8.9 2.1e-07 31.4 8.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294496330|ref|YP_003542823.1| - 5.8e-07 29.6 9.4 1e-06 28.8 9.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|294496330|ref|YP_003542823.1| - 2.2e-06 27.2 15.8 0.0012 18.5 3.8 3.1 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|294496330|ref|YP_003542823.1| - 1.6e-05 24.9 10.7 5.6e-05 23.2 11.0 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294496330|ref|YP_003542823.1| - 0.00013 21.8 10.6 0.011 15.7 1.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|294496330|ref|YP_003542823.1| - 0.00078 20.3 12.1 0.2 12.6 3.6 2.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|294496330|ref|YP_003542823.1| - 0.00095 19.7 3.8 0.005 17.3 0.2 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294496330|ref|YP_003542823.1| - 0.0089 16.5 11.3 0.69 10.6 1.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|294496330|ref|YP_003542823.1| - 0.071 14.1 12.9 0.48 11.5 2.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain CMAS PF02353.20 gi|294496330|ref|YP_003542823.1| - 0.085 12.1 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Fer4_8 PF13183.6 gi|294496330|ref|YP_003542823.1| - 0.13 12.7 9.6 0.19 12.2 1.1 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain FGGY_N PF00370.21 gi|294496330|ref|YP_003542823.1| - 0.17 11.4 0.0 0.31 10.5 0.0 1.4 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain Fer4_13 PF13370.6 gi|294496330|ref|YP_003542823.1| - 1.7 9.2 8.9 4.6 7.9 8.9 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I PcrB PF01884.17 gi|294496331|ref|YP_003542824.1| - 0.12 11.8 0.6 3.6 7.0 0.3 2.2 1 1 1 2 2 2 0 PcrB family Ribosomal_L31 PF01197.18 gi|294496332|ref|YP_003542825.1| - 0.076 13.3 0.2 0.17 12.1 0.2 1.6 1 0 0 1 1 1 0 Ribosomal protein L31 CBFD_NFYB_HMF PF00808.23 gi|294496333|ref|YP_003542826.1| - 2.1e-16 59.9 0.7 2.4e-16 59.7 0.7 1.1 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|294496333|ref|YP_003542826.1| - 2.9e-09 37.4 0.2 3.2e-09 37.2 0.2 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|294496333|ref|YP_003542826.1| - 1.3e-07 31.7 0.0 1.4e-07 31.6 0.0 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|294496333|ref|YP_003542826.1| - 0.00015 22.1 0.1 0.00016 22.0 0.1 1.3 1 1 0 1 1 1 1 CENP-S protein TFIID-31kDa PF02291.15 gi|294496333|ref|YP_003542826.1| - 0.00015 21.8 0.0 0.00018 21.6 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TAF PF02969.17 gi|294496333|ref|YP_003542826.1| - 0.0014 18.7 0.4 0.0017 18.5 0.4 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) ApbA_C PF08546.11 gi|294496333|ref|YP_003542826.1| - 0.005 17.0 0.2 0.0059 16.8 0.2 1.1 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal Bromo_TP PF07524.13 gi|294496333|ref|YP_003542826.1| - 0.0052 16.8 0.0 0.0064 16.5 0.0 1.1 1 0 0 1 1 1 1 Bromodomain associated DUF2949 PF11165.8 gi|294496333|ref|YP_003542826.1| - 0.038 14.3 0.1 2.8 8.3 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2949) Sm_multidrug_ex PF06695.11 gi|294496334|ref|YP_003542827.1| - 6.5e-40 136.5 3.6 9.7e-40 136.0 3.6 1.3 1 0 0 1 1 1 1 Putative small multi-drug export protein Rep_fac_C PF08542.11 gi|294496335|ref|YP_003542828.1| - 1.2e-22 80.1 0.0 2.6e-22 79.0 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|294496335|ref|YP_003542828.1| - 4e-18 66.1 0.0 1e-17 64.8 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|294496335|ref|YP_003542828.1| - 1.9e-16 60.3 0.0 6.1e-11 42.4 0.0 2.4 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|294496335|ref|YP_003542828.1| - 1.5e-08 34.6 0.0 1.5e-07 31.3 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|294496335|ref|YP_003542828.1| - 5e-07 30.3 0.1 0.00011 22.7 0.0 2.6 2 1 1 3 3 3 1 AAA ATPase domain Rad17 PF03215.15 gi|294496335|ref|YP_003542828.1| - 1.1e-06 28.8 0.0 1.7e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_3 PF07726.11 gi|294496335|ref|YP_003542828.1| - 2.4e-06 27.4 0.0 1.2e-05 25.2 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|294496335|ref|YP_003542828.1| - 4e-06 26.9 0.0 6.9e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|294496335|ref|YP_003542828.1| - 1.1e-05 24.8 0.0 9e-05 21.8 0.0 2.2 2 1 1 3 3 3 1 TIP49 P-loop domain ResIII PF04851.15 gi|294496335|ref|YP_003542828.1| - 3.4e-05 23.9 0.0 8.7e-05 22.6 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Mg_chelatase PF01078.21 gi|294496335|ref|YP_003542828.1| - 0.00013 21.4 0.0 0.022 14.1 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|294496335|ref|YP_003542828.1| - 0.00043 20.8 0.0 0.033 14.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_assoc_2 PF16193.5 gi|294496335|ref|YP_003542828.1| - 0.001 19.3 0.0 0.0022 18.3 0.0 1.5 1 0 0 1 1 1 1 AAA C-terminal domain IstB_IS21 PF01695.17 gi|294496335|ref|YP_003542828.1| - 0.0019 18.0 0.0 0.0065 16.2 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|294496335|ref|YP_003542828.1| - 0.0022 18.3 0.0 1.1 9.5 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|294496335|ref|YP_003542828.1| - 0.0027 17.7 0.0 0.028 14.4 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|294496335|ref|YP_003542828.1| - 0.0036 17.0 0.0 1.8 8.2 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_11 PF13086.6 gi|294496335|ref|YP_003542828.1| - 0.013 15.3 0.0 0.025 14.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_2 PF07724.14 gi|294496335|ref|YP_003542828.1| - 0.013 15.6 0.0 0.031 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) DNA_pol3_delta PF06144.13 gi|294496335|ref|YP_003542828.1| - 0.014 15.1 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit AAA_7 PF12775.7 gi|294496335|ref|YP_003542828.1| - 0.031 13.8 0.0 0.056 13.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|294496335|ref|YP_003542828.1| - 0.04 13.6 0.0 0.11 12.2 0.0 1.7 2 0 0 2 2 1 0 AAA domain PhoH PF02562.16 gi|294496335|ref|YP_003542828.1| - 0.059 12.8 0.0 3.8 6.9 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein AAA_25 PF13481.6 gi|294496335|ref|YP_003542828.1| - 0.086 12.4 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF3400 PF11880.8 gi|294496335|ref|YP_003542828.1| - 0.1 12.1 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) SNF2_N PF00176.23 gi|294496335|ref|YP_003542828.1| - 0.11 11.2 0.0 0.38 9.4 0.0 1.7 1 1 0 2 2 2 0 SNF2 family N-terminal domain RNA_helicase PF00910.22 gi|294496335|ref|YP_003542828.1| - 0.12 12.7 0.0 0.27 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF4870 PF09685.10 gi|294496336|ref|YP_003542829.1| - 1.7e-05 24.9 4.4 2.2e-05 24.5 4.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) Fer4 PF00037.27 gi|294496337|ref|YP_003542830.1| - 1.6e-20 72.0 51.8 8.4e-08 31.7 7.5 5.9 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294496337|ref|YP_003542830.1| - 9.5e-16 58.1 52.6 1.8e-08 34.8 13.1 4.5 1 1 3 4 4 4 3 4Fe-4S dicluster domain FeS PF04060.13 gi|294496337|ref|YP_003542830.1| - 3.2e-14 52.3 3.2 3.2e-14 52.3 3.2 4.3 5 1 0 5 5 4 1 Putative Fe-S cluster Fer4_6 PF12837.7 gi|294496337|ref|YP_003542830.1| - 8e-14 51.0 46.6 3.6e-05 23.6 5.3 5.7 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|294496337|ref|YP_003542830.1| - 1.1e-12 47.9 46.0 2.2e-05 24.5 18.7 4.9 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294496337|ref|YP_003542830.1| - 2.5e-12 46.8 29.6 5.5e-08 32.9 15.0 3.9 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294496337|ref|YP_003542830.1| - 6.5e-11 41.6 45.3 4.5e-05 23.3 1.4 5.9 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|294496337|ref|YP_003542830.1| - 2.7e-08 33.8 49.7 9e-06 25.7 16.7 5.3 2 2 2 4 4 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294496337|ref|YP_003542830.1| - 4.4e-06 27.5 45.4 0.0023 18.8 14.5 4.9 4 1 1 5 5 5 4 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|294496337|ref|YP_003542830.1| - 2e-05 25.0 35.3 0.0059 17.1 2.5 5.5 4 1 1 5 5 5 3 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|294496337|ref|YP_003542830.1| - 2.7e-05 24.8 53.9 0.0069 17.3 4.2 6.5 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294496337|ref|YP_003542830.1| - 0.00019 21.9 45.2 0.0047 17.4 15.1 4.7 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294496337|ref|YP_003542830.1| - 0.00028 21.1 57.6 0.022 15.3 1.2 6.2 7 0 0 7 7 5 4 4Fe-4S binding domain Fer4_8 PF13183.6 gi|294496337|ref|YP_003542830.1| - 0.03 14.8 48.1 0.099 13.1 15.3 4.7 2 2 3 5 5 5 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|294496337|ref|YP_003542830.1| - 0.14 12.9 36.7 0.11 13.2 3.3 6.0 4 1 0 4 4 4 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|294496337|ref|YP_003542830.1| - 0.73 10.7 43.9 0.12 13.2 2.9 5.0 3 2 2 5 5 5 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|294496337|ref|YP_003542830.1| - 1 9.5 38.1 0.12 12.5 14.5 3.8 2 1 2 4 4 4 0 4Fe-4S dicluster domain Rnf-Nqr PF02508.14 gi|294496338|ref|YP_003542831.1| - 1.8e-55 187.6 21.8 2.1e-55 187.4 21.8 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein DUF2070 PF09843.9 gi|294496338|ref|YP_003542831.1| - 0.35 9.1 16.5 0.46 8.7 16.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Abhydrolase_9_N PF15420.6 gi|294496338|ref|YP_003542831.1| - 3.9 7.4 7.9 0.49 10.4 0.3 2.3 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus Rnf-Nqr PF02508.14 gi|294496339|ref|YP_003542832.1| - 8.9e-63 211.4 15.3 1e-62 211.2 15.3 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein FMN_bind PF04205.14 gi|294496340|ref|YP_003542833.1| - 3.4e-17 62.8 0.5 5.7e-17 62.0 0.5 1.4 1 0 0 1 1 1 1 FMN-binding domain NQR2_RnfD_RnfE PF03116.15 gi|294496341|ref|YP_003542834.1| - 2.9e-73 246.8 25.2 3.6e-73 246.5 25.2 1.1 1 0 0 1 1 1 1 NQR2, RnfD, RnfE family Complex1_51K PF01512.17 gi|294496342|ref|YP_003542835.1| - 4.9e-22 78.4 0.0 1.4e-21 77.0 0.0 1.8 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.6 gi|294496342|ref|YP_003542835.1| - 2.1e-19 69.4 1.5 2.1e-19 69.4 1.5 2.2 2 1 0 2 2 2 1 RnfC Barrel sandwich hybrid domain Fer4_7 PF12838.7 gi|294496342|ref|YP_003542835.1| - 2.7e-09 37.5 11.7 9.8e-09 35.7 11.7 2.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294496342|ref|YP_003542835.1| - 4.2e-09 36.4 22.4 5.2e-07 29.7 13.4 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain SLBB PF10531.9 gi|294496342|ref|YP_003542835.1| - 5.4e-09 35.8 0.2 1.1e-08 34.7 0.2 1.6 1 0 0 1 1 1 1 SLBB domain Fer4 PF00037.27 gi|294496342|ref|YP_003542835.1| - 5.7e-09 35.4 13.3 0.00017 21.2 2.9 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|294496342|ref|YP_003542835.1| - 1.4e-08 34.8 11.5 0.00021 21.4 2.9 2.9 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294496342|ref|YP_003542835.1| - 2.5e-08 33.9 22.0 1.2e-06 28.6 13.1 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|294496342|ref|YP_003542835.1| - 7.7e-08 32.7 30.9 8.5e-06 26.1 12.3 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294496342|ref|YP_003542835.1| - 1.4e-07 31.3 12.6 0.0013 18.8 1.3 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|294496342|ref|YP_003542835.1| - 7.1e-07 29.0 12.2 0.0027 17.7 2.7 3.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294496342|ref|YP_003542835.1| - 1.6e-06 28.6 12.3 3e-05 24.5 13.2 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|294496342|ref|YP_003542835.1| - 2.1e-06 27.9 12.7 0.0039 17.4 2.5 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|294496342|ref|YP_003542835.1| - 7.3e-06 26.6 16.3 0.015 16.2 5.5 3.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|294496342|ref|YP_003542835.1| - 1.1e-05 26.3 13.0 0.013 16.4 1.9 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|294496342|ref|YP_003542835.1| - 1.5e-05 25.2 17.4 0.0038 17.6 2.4 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|294496342|ref|YP_003542835.1| - 0.00021 22.1 6.9 0.17 12.8 2.6 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain NQRA PF05896.11 gi|294496342|ref|YP_003542835.1| - 0.073 12.5 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Fer4_13 PF13370.6 gi|294496342|ref|YP_003542835.1| - 0.25 11.9 13.5 1.1 9.9 2.3 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_20 PF14691.6 gi|294496342|ref|YP_003542835.1| - 0.44 10.3 11.2 4.6 7.0 10.1 2.4 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Cytochrome_C7 PF14522.6 gi|294496343|ref|YP_003542836.1| - 5.4e-06 26.3 32.5 0.025 14.6 0.4 4.9 3 2 1 4 4 4 4 Cytochrome c7 and related cytochrome c Cytochrom_c3_2 PF14537.6 gi|294496343|ref|YP_003542836.1| - 7.5e-06 26.3 30.4 0.0082 16.6 0.2 5.1 3 2 0 3 3 3 2 Cytochrome c3 Cytochrom_NNT PF03264.14 gi|294496343|ref|YP_003542836.1| - 0.00027 20.7 23.9 0.13 11.9 4.4 6.1 5 1 1 6 6 6 2 NapC/NirT cytochrome c family, N-terminal region EF-hand_5 PF13202.6 gi|294496343|ref|YP_003542836.1| - 0.18 11.4 0.0 0.18 11.4 0.0 2.1 1 1 1 2 2 2 0 EF hand Flocculin_t3 PF13928.6 gi|294496343|ref|YP_003542836.1| - 2.3 8.8 5.4 4.3 7.9 1.6 2.9 2 1 0 2 2 2 0 Flocculin type 3 repeat EF-hand_1 PF00036.32 gi|294496343|ref|YP_003542836.1| - 2.5 7.8 3.5 2.4 7.9 0.1 2.3 1 1 1 2 2 2 0 EF hand ApbE PF02424.15 gi|294496344|ref|YP_003542837.1| - 3.1e-76 256.3 0.2 3.6e-76 256.1 0.2 1.0 1 0 0 1 1 1 1 ApbE family Mcl1_mid PF12341.8 gi|294496344|ref|YP_003542837.1| - 0.032 13.6 0.0 0.058 12.7 0.0 1.4 1 0 0 1 1 1 0 Minichromosome loss protein, Mcl1, middle region ABC2_membrane_3 PF12698.7 gi|294496344|ref|YP_003542837.1| - 0.76 8.8 3.5 0.66 9.0 2.6 1.4 2 0 0 2 2 2 0 ABC-2 family transporter protein LigT_PEase PF02834.16 gi|294496345|ref|YP_003542838.1| - 1.9e-28 98.5 0.0 9.4e-15 54.6 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|294496345|ref|YP_003542838.1| - 2.5e-10 40.5 0.0 3.1e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|294496345|ref|YP_003542838.1| - 1.3e-08 35.0 0.0 1.4e-08 34.9 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain DisA_N PF02457.16 gi|294496346|ref|YP_003542839.1| - 4.4e-21 74.7 5.0 6.9e-21 74.0 0.2 3.0 2 1 1 3 3 3 1 DisA bacterial checkpoint controller nucleotide-binding Laminin_G_3 PF13385.6 gi|294496346|ref|YP_003542839.1| - 0.18 12.0 0.0 0.25 11.5 0.0 1.3 1 0 0 1 1 1 0 Concanavalin A-like lectin/glucanases superfamily eRF1_1 PF03463.15 gi|294496347|ref|YP_003542840.1| - 1.1e-27 96.6 0.9 1.7e-27 96.0 0.9 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|294496347|ref|YP_003542840.1| - 3.1e-24 85.6 0.4 8.8e-24 84.2 0.4 1.8 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|294496347|ref|YP_003542840.1| - 3e-08 34.1 0.0 6.1e-07 29.8 0.0 2.3 1 1 0 1 1 1 1 eRF1 domain 2 FbpA PF05833.11 gi|294496348|ref|YP_003542841.1| - 5.9e-99 331.9 1.2 7.5e-99 331.5 1.2 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|294496348|ref|YP_003542841.1| - 4e-26 91.8 0.0 8.1e-26 90.8 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain Plk4_PB2 PF18409.1 gi|294496348|ref|YP_003542841.1| - 0.31 11.8 1.7 0.93 10.2 0.5 2.2 2 0 0 2 2 2 0 Polo-like Kinase 4 Polo Box 2 Fib_alpha PF08702.10 gi|294496348|ref|YP_003542841.1| - 1.6 8.9 7.4 0.12 12.5 2.1 1.8 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family DNA_primase_S PF01896.19 gi|294496349|ref|YP_003542842.1| - 1.2e-20 74.3 0.0 2.7e-20 73.1 0.0 1.6 1 1 0 1 1 1 1 DNA primase small subunit Sld5 PF05916.11 gi|294496350|ref|YP_003542843.1| - 0.0032 17.9 1.3 0.0074 16.7 1.3 1.8 1 0 0 1 1 1 1 GINS complex protein Ribosomal_L44 PF00935.19 gi|294496351|ref|YP_003542844.1| - 2.6e-23 82.3 10.4 3.5e-23 81.9 10.4 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|294496351|ref|YP_003542844.1| - 0.031 13.7 2.7 1.7 8.1 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|294496351|ref|YP_003542844.1| - 0.034 14.2 3.2 0.056 13.5 3.2 1.4 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_10 PF10058.9 gi|294496351|ref|YP_003542844.1| - 0.05 13.3 0.5 2.3 8.0 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Ribosomal_L33 PF00471.20 gi|294496351|ref|YP_003542844.1| - 0.15 12.6 2.7 0.15 12.6 2.7 2.8 3 1 0 3 3 3 0 Ribosomal protein L33 PGC7_Stella PF15549.6 gi|294496351|ref|YP_003542844.1| - 1.4 8.9 6.3 6.5 6.7 0.3 2.0 1 1 1 2 2 2 0 PGC7/Stella/Dppa3 domain zinc_ribbon_2 PF13240.6 gi|294496351|ref|YP_003542844.1| - 5 7.0 8.6 2.4 8.0 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|294496352|ref|YP_003542845.1| - 7.7e-25 86.4 0.9 8.3e-25 86.3 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zf-C2H2_12 PF18658.1 gi|294496352|ref|YP_003542845.1| - 0.0022 17.5 0.1 0.0036 16.8 0.0 1.3 1 1 0 1 1 1 1 Zinc-finger C2H2-type zf-RING_10 PF16685.5 gi|294496352|ref|YP_003542845.1| - 0.014 15.6 0.3 0.11 12.6 0.0 1.9 2 0 0 2 2 2 0 zinc RING finger of MSL2 HypA PF01155.19 gi|294496352|ref|YP_003542845.1| - 0.02 14.9 0.4 0.022 14.7 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS91 PF14319.6 gi|294496352|ref|YP_003542845.1| - 0.021 14.8 0.2 0.022 14.8 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain C1_1 PF00130.22 gi|294496352|ref|YP_003542845.1| - 0.026 14.4 0.7 0.036 13.9 0.7 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Sgf11 PF08209.11 gi|294496352|ref|YP_003542845.1| - 0.031 13.8 2.5 0.097 12.3 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-BED PF02892.15 gi|294496352|ref|YP_003542845.1| - 0.036 14.1 2.7 0.57 10.2 2.7 2.0 1 1 0 1 1 1 0 BED zinc finger zinc_ribbon_6 PF14599.6 gi|294496352|ref|YP_003542845.1| - 0.057 13.4 2.5 0.15 12.1 2.2 1.9 2 1 1 3 3 3 0 Zinc-ribbon ZZ PF00569.17 gi|294496352|ref|YP_003542845.1| - 0.38 10.6 3.6 4.5 7.2 3.9 2.0 1 1 1 2 2 2 0 Zinc finger, ZZ type EIF_2_alpha PF07541.12 gi|294496353|ref|YP_003542846.1| - 1.4e-24 86.4 0.1 2.4e-24 85.6 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|294496353|ref|YP_003542846.1| - 3.6e-11 43.3 0.2 7.9e-11 42.1 0.2 1.5 1 0 0 1 1 1 1 S1 RNA binding domain DUF952 PF06108.12 gi|294496353|ref|YP_003542846.1| - 0.072 13.1 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF952) Nop10p PF04135.12 gi|294496354|ref|YP_003542847.1| - 1.6e-21 76.1 3.3 1.7e-21 76.0 3.3 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family PolC_DP2 PF03833.13 gi|294496354|ref|YP_003542847.1| - 0.0053 14.7 0.4 0.0053 14.7 0.4 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 NOB1_Zn_bind PF08772.11 gi|294496354|ref|YP_003542847.1| - 0.008 16.3 0.9 0.01 16.0 0.9 1.4 1 1 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like zf-H2C2_2 PF13465.6 gi|294496354|ref|YP_003542847.1| - 0.0084 16.5 1.1 0.98 10.0 0.0 2.2 2 0 0 2 2 2 1 Zinc-finger double domain RecR PF02132.15 gi|294496354|ref|YP_003542847.1| - 0.015 14.8 1.0 0.019 14.5 1.0 1.2 1 0 0 1 1 1 0 RecR protein DUF1272 PF06906.11 gi|294496354|ref|YP_003542847.1| - 0.018 15.1 1.2 0.02 15.0 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) DUF2321 PF10083.9 gi|294496354|ref|YP_003542847.1| - 0.04 13.6 0.1 0.04 13.6 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) HypA PF01155.19 gi|294496354|ref|YP_003542847.1| - 0.05 13.6 1.1 0.056 13.5 1.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 gi|294496354|ref|YP_003542847.1| - 0.071 13.0 1.0 0.15 12.0 1.0 1.6 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) NRDD PF13597.6 gi|294496354|ref|YP_003542847.1| - 0.095 11.5 0.8 0.092 11.5 0.8 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-ribbon_3 PF13248.6 gi|294496354|ref|YP_003542847.1| - 0.12 11.9 4.5 0.19 11.2 0.5 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|294496354|ref|YP_003542847.1| - 0.26 11.1 5.0 0.69 9.7 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.11 gi|294496354|ref|YP_003542847.1| - 0.41 10.7 7.1 1.4 8.9 1.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ACC PF17848.1 gi|294496354|ref|YP_003542847.1| - 0.85 9.7 7.6 3.3 7.9 0.5 2.2 1 1 1 2 2 2 0 Acetyl-coA carboxylase zinc finger domain PAC2 PF09754.9 gi|294496355|ref|YP_003542848.1| - 1.9e-52 178.4 0.1 2.1e-52 178.2 0.1 1.0 1 0 0 1 1 1 1 PAC2 family NAD_binding_10 PF13460.6 gi|294496355|ref|YP_003542848.1| - 0.045 13.6 0.0 0.73 9.7 0.0 2.4 3 0 0 3 3 3 0 NAD(P)H-binding PHP PF02811.19 gi|294496356|ref|YP_003542849.1| - 0.018 15.4 0.1 0.035 14.4 0.1 1.8 1 1 0 1 1 1 0 PHP domain PHP_C PF13263.6 gi|294496356|ref|YP_003542849.1| - 0.14 11.9 0.0 0.4 10.5 0.0 1.8 1 0 0 1 1 1 0 PHP-associated AAA_15 PF13175.6 gi|294496357|ref|YP_003542850.1| - 1.8e-21 77.3 25.2 5.6e-14 52.6 11.8 3.1 2 1 1 3 3 3 2 AAA ATPase domain AAA_21 PF13304.6 gi|294496357|ref|YP_003542850.1| - 2e-17 64.0 4.0 8.8e-17 61.9 4.0 2.1 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|294496357|ref|YP_003542850.1| - 3.7e-11 43.9 3.5 3.7e-11 43.9 3.5 2.5 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|294496357|ref|YP_003542850.1| - 7.7e-08 32.0 0.0 1.4e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|294496357|ref|YP_003542850.1| - 4e-06 26.4 0.7 3.4e-05 23.4 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|294496357|ref|YP_003542850.1| - 1.7e-05 24.6 0.0 3.4e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF2813 PF11398.8 gi|294496357|ref|YP_003542850.1| - 0.00014 21.3 0.1 0.0098 15.2 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) ABC_tran PF00005.27 gi|294496357|ref|YP_003542850.1| - 0.00055 20.5 0.1 0.023 15.2 0.0 2.8 3 1 1 4 4 4 1 ABC transporter MMR_HSR1 PF01926.23 gi|294496357|ref|YP_003542850.1| - 0.0093 16.0 0.2 0.03 14.4 0.2 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase DUF4994 PF16385.5 gi|294496357|ref|YP_003542850.1| - 0.03 14.2 0.0 0.09 12.7 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function DUF4347 PF14252.6 gi|294496357|ref|YP_003542850.1| - 0.088 12.6 0.0 1.9 8.3 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4347) Dynamin_N PF00350.23 gi|294496357|ref|YP_003542850.1| - 0.11 12.6 0.3 0.37 10.8 0.0 2.1 2 0 0 2 2 2 0 Dynamin family SAD_SRA PF02182.17 gi|294496358|ref|YP_003542851.1| - 0.0029 17.3 0.1 0.0035 17.1 0.1 1.3 1 1 0 1 1 1 1 SAD/SRA domain Inhibitor_I42 PF09394.10 gi|294496359|ref|YP_003542852.1| - 3.2e-26 91.5 0.3 7.7e-26 90.3 0.1 1.7 2 0 0 2 2 2 1 Chagasin family peptidase inhibitor I42 MacB_PCD PF12704.7 gi|294496360|ref|YP_003542853.1| - 4e-23 82.8 3.8 4e-23 82.8 3.8 2.2 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|294496360|ref|YP_003542853.1| - 3.4e-13 49.9 4.9 3.4e-13 49.9 4.9 3.2 3 0 0 3 3 3 1 FtsX-like permease family DUF4118 PF13493.6 gi|294496360|ref|YP_003542853.1| - 6.5 6.6 16.3 0.43 10.4 5.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4118) DUF2207 PF09972.9 gi|294496360|ref|YP_003542853.1| - 8.3 5.0 8.4 45 2.6 8.4 2.2 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3040 PF11239.8 gi|294496360|ref|YP_003542853.1| - 8.6 6.7 10.6 38 4.7 4.3 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3040) MacB_PCD PF12704.7 gi|294496361|ref|YP_003542854.1| - 3.2e-23 83.1 5.2 3.2e-23 83.1 5.2 2.8 4 0 0 4 4 4 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|294496361|ref|YP_003542854.1| - 1.1e-12 48.3 5.0 1.1e-12 48.3 5.0 3.3 3 0 0 3 3 3 1 FtsX-like permease family DUF21 PF01595.20 gi|294496361|ref|YP_003542854.1| - 7 6.3 12.6 2.6 7.7 5.0 2.5 2 1 0 2 2 2 0 Cyclin M transmembrane N-terminal domain ETRAMP PF09716.10 gi|294496362|ref|YP_003542855.1| - 0.043 13.9 0.0 0.28 11.3 0.0 2.0 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) NPCBM_assoc PF10633.9 gi|294496362|ref|YP_003542855.1| - 0.055 13.7 0.3 9 6.6 0.0 3.7 4 1 0 4 4 4 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|294496362|ref|YP_003542855.1| - 0.081 13.2 0.3 9 6.7 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function DUF11 OppC_N PF12911.7 gi|294496362|ref|YP_003542855.1| - 0.17 11.9 0.3 1.7 8.7 0.0 2.2 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Insulin_TMD PF17870.1 gi|294496362|ref|YP_003542855.1| - 0.18 11.9 0.0 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment ABC_tran PF00005.27 gi|294496363|ref|YP_003542856.1| - 3.2e-32 111.9 0.0 4.4e-32 111.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|294496363|ref|YP_003542856.1| - 9.9e-08 32.1 0.0 0.00046 20.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|294496363|ref|YP_003542856.1| - 1.5e-05 24.5 0.1 0.00015 21.3 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|294496363|ref|YP_003542856.1| - 0.00026 20.7 0.0 0.00051 19.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|294496363|ref|YP_003542856.1| - 0.00046 20.6 0.0 0.00092 19.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|294496363|ref|YP_003542856.1| - 0.00047 20.1 0.0 0.00087 19.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|294496363|ref|YP_003542856.1| - 0.004 17.4 0.2 0.019 15.3 0.1 1.9 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|294496363|ref|YP_003542856.1| - 0.0053 16.5 0.0 0.13 12.0 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein MMR_HSR1 PF01926.23 gi|294496363|ref|YP_003542856.1| - 0.0098 16.0 0.2 0.052 13.6 0.0 2.1 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|294496363|ref|YP_003542856.1| - 0.013 16.0 0.0 0.022 15.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|294496363|ref|YP_003542856.1| - 0.017 14.7 0.0 0.038 13.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|294496363|ref|YP_003542856.1| - 0.024 14.6 0.0 0.32 10.9 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|294496363|ref|YP_003542856.1| - 0.038 13.7 0.2 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|294496363|ref|YP_003542856.1| - 0.046 13.4 0.0 0.11 12.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|294496363|ref|YP_003542856.1| - 0.051 13.1 0.0 0.079 12.5 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region NB-ARC PF00931.22 gi|294496363|ref|YP_003542856.1| - 0.056 12.6 0.3 0.14 11.3 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain G-alpha PF00503.20 gi|294496363|ref|YP_003542856.1| - 0.13 11.4 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.6 gi|294496363|ref|YP_003542856.1| - 0.15 12.2 0.4 0.47 10.6 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|294496363|ref|YP_003542856.1| - 0.16 12.5 0.4 0.28 11.7 0.4 1.8 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|294496363|ref|YP_003542856.1| - 0.18 12.2 0.0 0.34 11.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase FtsX PF02687.21 gi|294496366|ref|YP_003542859.1| - 7.4e-16 58.4 7.8 4.1e-15 56.0 2.3 3.1 3 0 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|294496366|ref|YP_003542859.1| - 2.4e-15 57.4 0.7 2.4e-15 57.4 0.7 1.8 2 0 0 2 2 2 1 MacB-like periplasmic core domain UPF0052 PF01933.18 gi|294496368|ref|YP_003542861.1| - 2.1e-49 168.3 0.0 2.4e-49 168.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 HD PF01966.22 gi|294496369|ref|YP_003542862.1| - 8.4e-11 42.2 2.6 8.4e-11 42.2 2.6 2.0 2 0 0 2 2 2 1 HD domain HDOD PF08668.12 gi|294496369|ref|YP_003542862.1| - 0.0078 15.7 0.1 0.02 14.4 0.1 1.6 1 1 0 1 1 1 1 HDOD domain HTH_40 PF14493.6 gi|294496369|ref|YP_003542862.1| - 0.12 12.8 0.7 2.5 8.6 0.1 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain CSD PF00313.22 gi|294496370|ref|YP_003542863.1| - 0.058 13.3 0.0 11 6.0 0.0 2.1 2 0 0 2 2 2 0 'Cold-shock' DNA-binding domain Flavoprotein PF02441.19 gi|294496371|ref|YP_003542864.1| - 2.7e-26 92.2 0.0 3.4e-26 91.9 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein ThiS PF02597.20 gi|294496372|ref|YP_003542865.1| - 1.5e-19 70.4 0.2 1.7e-19 70.2 0.2 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|294496372|ref|YP_003542865.1| - 0.0032 17.8 0.1 0.0036 17.6 0.1 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) TraC PF07820.12 gi|294496372|ref|YP_003542865.1| - 0.052 13.9 0.1 0.055 13.8 0.1 1.2 1 0 0 1 1 1 0 TraC-like protein CRCB PF02537.15 gi|294496373|ref|YP_003542866.1| - 2e-18 66.5 10.4 2.5e-18 66.2 10.4 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) CRCB PF02537.15 gi|294496374|ref|YP_003542867.1| - 3.7e-21 75.2 6.5 4.5e-21 75.0 6.5 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) MFS_1 PF07690.16 gi|294496374|ref|YP_003542867.1| - 0.0014 17.6 6.4 0.0017 17.3 6.4 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF4383 PF14325.6 gi|294496374|ref|YP_003542867.1| - 0.021 15.1 4.7 0.4 11.0 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4383) DUF190 PF02641.15 gi|294496375|ref|YP_003542868.1| - 2.9e-34 117.3 0.3 3.2e-34 117.1 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 CRS1_YhbY PF01985.21 gi|294496376|ref|YP_003542869.1| - 7.4e-21 74.1 0.2 8e-21 74.0 0.2 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain ATPase PF06745.13 gi|294496377|ref|YP_003542870.1| - 1.6e-10 40.8 0.3 3.2e-10 39.8 0.3 1.4 1 1 0 1 1 1 1 KaiC DUF835 PF05763.12 gi|294496377|ref|YP_003542870.1| - 0.00025 20.8 0.1 0.00062 19.5 0.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF835) DnaB_C PF03796.15 gi|294496377|ref|YP_003542870.1| - 0.13 11.5 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain MoCF_biosynth PF00994.24 gi|294496378|ref|YP_003542871.1| - 1.6e-34 118.6 0.1 1.9e-34 118.4 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain Ribosomal_L16 PF00252.18 gi|294496379|ref|YP_003542872.1| - 3.1e-34 117.8 3.2 3.6e-34 117.6 3.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e eIF-5_eIF-2B PF01873.17 gi|294496380|ref|YP_003542873.1| - 1.3e-36 125.0 0.0 1.9e-36 124.5 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|294496380|ref|YP_003542873.1| - 3.3e-12 46.2 0.5 5.8e-12 45.4 0.2 1.6 2 0 0 2 2 2 1 TRAM domain ZF-HD_dimer PF04770.12 gi|294496380|ref|YP_003542873.1| - 0.13 12.6 2.6 0.26 11.6 2.6 1.6 1 1 0 1 1 1 0 ZF-HD protein dimerisation region Radical_SAM PF04055.21 gi|294496381|ref|YP_003542874.1| - 7.6e-13 49.2 0.1 2.1e-12 47.8 0.1 1.8 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|294496381|ref|YP_003542874.1| - 6.3e-08 33.0 0.2 1.8e-07 31.6 0.2 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|294496381|ref|YP_003542874.1| - 0.00045 20.5 0.0 0.0018 18.6 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|294496381|ref|YP_003542874.1| - 0.00093 19.3 0.1 0.0027 17.8 0.1 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain QCR10 PF09796.9 gi|294496381|ref|YP_003542874.1| - 0.033 14.3 0.0 0.15 12.1 0.0 1.9 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) tRNA-synt_1b PF00579.25 gi|294496382|ref|YP_003542875.1| - 6.7e-32 111.0 0.0 1.2e-18 67.5 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA-synt_2d PF01409.20 gi|294496383|ref|YP_003542876.1| - 2.5e-93 312.1 0.0 3.2e-93 311.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|294496383|ref|YP_003542876.1| - 9.2e-08 31.8 0.0 6.5e-05 22.5 0.0 2.3 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|294496383|ref|YP_003542876.1| - 0.00035 19.8 0.4 0.035 13.2 0.1 3.0 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) MarR_2 PF12802.7 gi|294496383|ref|YP_003542876.1| - 0.00062 19.6 0.1 0.056 13.3 0.0 2.7 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|294496383|ref|YP_003542876.1| - 0.0059 16.5 0.2 0.82 9.6 0.1 2.9 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB PheRS_DBD3 PF18553.1 gi|294496383|ref|YP_003542876.1| - 0.0083 16.4 0.0 0.047 14.0 0.0 2.3 2 0 0 2 2 2 1 PheRS DNA binding domain 3 DUF4364 PF14277.6 gi|294496383|ref|YP_003542876.1| - 0.03 14.1 0.6 0.13 12.0 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|294496383|ref|YP_003542876.1| - 0.058 13.4 0.3 1.5 8.8 0.1 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DUF362 PF04015.12 gi|294496384|ref|YP_003542877.1| - 4.7e-48 164.1 0.1 6e-48 163.8 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|294496384|ref|YP_003542877.1| - 1.7e-09 37.1 21.8 1.2e-07 31.3 5.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|294496384|ref|YP_003542877.1| - 1.2e-07 31.4 18.3 1.4e-05 24.9 5.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|294496384|ref|YP_003542877.1| - 3.5e-07 30.0 5.6 3.5e-07 30.0 5.6 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|294496384|ref|YP_003542877.1| - 1.4e-06 28.4 15.6 1.5e-05 25.0 16.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|294496384|ref|YP_003542877.1| - 1.1e-05 25.9 16.0 2.4e-05 24.8 16.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|294496384|ref|YP_003542877.1| - 3.2e-05 24.3 7.7 0.0049 17.3 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294496384|ref|YP_003542877.1| - 7.6e-05 22.8 15.0 0.00014 22.0 15.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294496384|ref|YP_003542877.1| - 0.00089 20.1 12.8 0.0057 17.6 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|294496384|ref|YP_003542877.1| - 0.00099 19.2 14.2 0.0023 18.0 14.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294496384|ref|YP_003542877.1| - 0.0035 17.7 2.1 0.0035 17.7 2.1 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294496384|ref|YP_003542877.1| - 0.03 14.9 16.3 0.039 14.5 2.8 2.5 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|294496384|ref|YP_003542877.1| - 0.044 14.3 2.7 0.044 14.3 2.7 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|294496384|ref|YP_003542877.1| - 0.047 14.4 3.2 0.047 14.4 3.2 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain DUF531 PF04407.12 gi|294496385|ref|YP_003542878.1| - 1.7e-76 256.1 0.0 1.9e-76 255.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) Acetyltransf_10 PF13673.7 gi|294496386|ref|YP_003542879.1| - 7.5e-12 45.3 0.0 1e-11 44.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|294496386|ref|YP_003542879.1| - 9.7e-12 45.2 0.0 1.3e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|294496386|ref|YP_003542879.1| - 2.1e-10 40.9 0.0 2.7e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.6 gi|294496386|ref|YP_003542879.1| - 0.00079 19.5 0.3 0.0015 18.6 0.0 1.6 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|294496386|ref|YP_003542879.1| - 0.0034 17.3 0.0 0.016 15.2 0.0 2.0 1 1 0 1 1 1 1 FR47-like protein HCV_env PF01539.17 gi|294496386|ref|YP_003542879.1| - 0.0077 15.9 0.1 0.0096 15.6 0.1 1.2 1 0 0 1 1 1 1 Hepatitis C virus envelope glycoprotein E1 PanZ PF12568.8 gi|294496386|ref|YP_003542879.1| - 0.014 15.2 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_9 PF13527.7 gi|294496386|ref|YP_003542879.1| - 0.11 12.6 0.0 4.2 7.4 0.0 2.2 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Pribosyltran PF00156.27 gi|294496387|ref|YP_003542880.1| - 1.3e-19 70.3 0.1 1.5e-19 70.0 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|294496387|ref|YP_003542880.1| - 7.1e-06 25.6 0.0 9.2e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|294496387|ref|YP_003542880.1| - 0.0037 16.8 0.1 0.0051 16.3 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Diphthamide_syn PF01866.17 gi|294496388|ref|YP_003542881.1| - 1e-84 284.5 0.0 1.3e-84 284.2 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein DUF1847 PF08901.11 gi|294496388|ref|YP_003542881.1| - 0.058 13.0 0.0 0.65 9.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1847) PrmA PF06325.13 gi|294496389|ref|YP_003542882.1| - 2.1e-16 60.2 0.1 2.8e-16 59.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|294496389|ref|YP_003542882.1| - 3e-13 49.7 0.0 3.8e-13 49.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|294496389|ref|YP_003542882.1| - 2.3e-09 37.2 0.0 4.2e-09 36.4 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|294496389|ref|YP_003542882.1| - 1e-08 35.7 0.0 2.8e-08 34.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 gi|294496389|ref|YP_003542882.1| - 1e-06 28.6 1.4 2.5e-05 24.1 1.4 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|294496389|ref|YP_003542882.1| - 1.7e-05 25.4 0.1 4.2e-05 24.1 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|294496389|ref|YP_003542882.1| - 2.9e-05 24.0 0.0 3.3e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|294496389|ref|YP_003542882.1| - 0.00075 19.3 0.1 0.001 18.9 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein N6_Mtase PF02384.16 gi|294496389|ref|YP_003542882.1| - 0.001 18.4 0.0 0.0018 17.6 0.0 1.4 1 0 0 1 1 1 1 N-6 DNA Methylase Cons_hypoth95 PF03602.15 gi|294496389|ref|YP_003542882.1| - 0.0027 17.4 0.0 0.0053 16.4 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_32 PF13679.6 gi|294496389|ref|YP_003542882.1| - 0.0048 16.9 0.0 0.0065 16.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|294496389|ref|YP_003542882.1| - 0.0097 15.4 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 1 RRNA methyltransferase AviRa Methyltransf_12 PF08242.12 gi|294496389|ref|YP_003542882.1| - 0.068 13.9 0.0 0.11 13.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain ECR1_N PF14382.6 gi|294496390|ref|YP_003542883.1| - 9e-12 44.6 0.2 1.8e-11 43.6 0.2 1.5 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.9 gi|294496390|ref|YP_003542883.1| - 6.3e-05 23.5 3.0 6.3e-05 23.5 3.0 2.7 2 2 1 3 3 3 1 Exosome component EXOSC1/CSL4 S1 PF00575.23 gi|294496390|ref|YP_003542883.1| - 0.00033 20.9 2.6 0.05 14.0 0.1 2.7 2 0 0 2 2 2 1 S1 RNA binding domain zf-NADH-PPase PF09297.11 gi|294496390|ref|YP_003542883.1| - 0.0013 18.4 1.8 0.0022 17.6 1.8 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain Vfa1 PF08432.10 gi|294496390|ref|YP_003542883.1| - 0.0016 18.8 10.1 0.0023 18.3 10.1 1.2 1 0 0 1 1 1 1 AAA-ATPase Vps4-associated protein 1 HypA PF01155.19 gi|294496390|ref|YP_003542883.1| - 0.0032 17.5 0.1 0.0061 16.6 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|294496390|ref|YP_003542883.1| - 0.011 15.7 0.3 0.018 15.0 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Trm112p PF03966.16 gi|294496390|ref|YP_003542883.1| - 0.015 15.9 2.5 0.56 10.8 0.3 2.6 2 1 0 2 2 2 0 Trm112p-like protein Cupin_7 PF12973.7 gi|294496390|ref|YP_003542883.1| - 0.017 15.0 0.1 0.028 14.3 0.1 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain zf-ribbon_3 PF13248.6 gi|294496390|ref|YP_003542883.1| - 0.059 12.8 1.6 0.13 11.7 1.6 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|294496390|ref|YP_003542883.1| - 0.4 10.4 4.4 0.83 9.4 4.4 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|294496390|ref|YP_003542883.1| - 0.45 10.7 1.7 1 9.5 1.7 1.6 1 0 0 1 1 1 0 Zinc ribbon domain NPR3 PF03666.13 gi|294496390|ref|YP_003542883.1| - 2.7 6.7 8.7 3.7 6.2 8.7 1.2 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 Sec62 PF03839.16 gi|294496390|ref|YP_003542883.1| - 3 7.3 8.1 4 6.9 8.1 1.2 1 0 0 1 1 1 0 Translocation protein Sec62 Presenilin PF01080.17 gi|294496390|ref|YP_003542883.1| - 3.5 6.3 6.3 4.8 5.8 6.3 1.2 1 0 0 1 1 1 0 Presenilin V_ATPase_I PF01496.19 gi|294496390|ref|YP_003542883.1| - 8.9 4.1 9.5 11 3.7 9.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family RNA_pol_L_2 PF13656.6 gi|294496391|ref|YP_003542884.1| - 7.1e-20 70.6 0.0 9.5e-20 70.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|294496391|ref|YP_003542884.1| - 1e-05 24.9 0.0 1.5e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain SepSecS PF05889.13 gi|294496392|ref|YP_003542885.1| - 8e-48 163.1 0.0 3.4e-47 161.0 0.0 1.9 1 1 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|294496392|ref|YP_003542885.1| - 3.1e-17 62.6 0.0 4.5e-17 62.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|294496392|ref|YP_003542885.1| - 1.5e-09 37.5 0.0 2.2e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|294496392|ref|YP_003542885.1| - 9e-05 21.9 0.0 0.00014 21.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.20 gi|294496392|ref|YP_003542885.1| - 0.00057 18.7 0.0 0.0014 17.4 0.0 1.5 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Pyridoxal_deC PF00282.19 gi|294496392|ref|YP_003542885.1| - 0.018 13.8 0.0 0.028 13.2 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Rhodanese PF00581.20 gi|294496393|ref|YP_003542886.1| - 3.4e-38 130.4 0.3 5.6e-14 52.6 0.1 3.5 3 1 0 3 3 3 3 Rhodanese-like domain DUF3293 PF11697.8 gi|294496393|ref|YP_003542886.1| - 0.1 13.1 0.0 5.4 7.6 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3293) Methyltransf_33 PF10017.9 gi|294496394|ref|YP_003542887.1| - 3.1e-99 332.0 0.0 3.6e-99 331.8 0.0 1.0 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent DUF4037 PF13228.6 gi|294496394|ref|YP_003542887.1| - 0.0092 16.8 0.0 7.2 7.5 0.0 2.7 2 0 0 2 2 2 2 Domain of unknown function (DUF4037) Mad3_BUB1_II PF08171.11 gi|294496394|ref|YP_003542887.1| - 0.014 15.5 0.1 0.039 14.1 0.1 1.8 1 0 0 1 1 1 0 Mad3/BUB1 homology region 2 Aminotran_5 PF00266.19 gi|294496395|ref|YP_003542888.1| - 2.6e-131 438.0 0.2 3e-131 437.8 0.2 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|294496395|ref|YP_003542888.1| - 3.1e-09 36.5 0.1 5.2e-09 35.7 0.1 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|294496395|ref|YP_003542888.1| - 1.1e-07 31.5 0.1 1.9e-07 30.7 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SepSecS PF05889.13 gi|294496395|ref|YP_003542888.1| - 2.6e-06 26.4 0.4 9.6e-06 24.5 0.4 1.9 1 1 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Cys_Met_Meta_PP PF01053.20 gi|294496395|ref|YP_003542888.1| - 1.7e-05 23.6 0.1 2.7e-05 22.9 0.1 1.5 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|294496395|ref|YP_003542888.1| - 0.00063 19.1 0.1 0.00075 18.9 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase CBM60 PF16841.5 gi|294496395|ref|YP_003542888.1| - 0.014 15.8 0.7 1.4 9.4 0.1 3.5 4 0 0 4 4 4 0 Ca-dependent carbohydrate-binding module xylan-binding Pyridoxal_deC PF00282.19 gi|294496395|ref|YP_003542888.1| - 0.041 12.6 0.1 0.061 12.0 0.1 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain SufE PF02657.15 gi|294496396|ref|YP_003542889.1| - 4.4e-40 136.3 0.0 5e-40 136.1 0.0 1.0 1 0 0 1 1 1 1 Fe-S metabolism associated domain HTH_45 PF14947.6 gi|294496397|ref|YP_003542890.1| - 8e-06 25.8 0.0 1.4e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|294496397|ref|YP_003542890.1| - 0.00051 20.0 0.0 0.00064 19.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|294496397|ref|YP_003542890.1| - 0.057 13.6 0.0 0.084 13.0 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HemN_C PF06969.16 gi|294496397|ref|YP_003542890.1| - 0.12 12.5 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 HemN C-terminal domain GHD PF17834.1 gi|294496397|ref|YP_003542890.1| - 0.14 12.2 0.0 0.34 11.0 0.0 1.6 2 0 0 2 2 2 0 Beta-sandwich domain in beta galactosidase DUF1289 PF06945.13 gi|294496398|ref|YP_003542891.1| - 0.025 14.4 3.1 0.065 13.1 3.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1289) Cyt-b5 PF00173.28 gi|294496399|ref|YP_003542892.1| - 1.5e-08 34.7 0.1 2e-08 34.3 0.1 1.2 1 0 0 1 1 1 1 Cytochrome b5-like Heme/Steroid binding domain PALP PF00291.25 gi|294496400|ref|YP_003542893.1| - 5.4e-31 108.1 0.1 6.3e-31 107.9 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADK_lid PF05191.14 gi|294496400|ref|YP_003542893.1| - 0.0033 17.4 0.4 0.0071 16.3 0.4 1.5 1 0 0 1 1 1 1 Adenylate kinase, active site lid zinc_ribbon_2 PF13240.6 gi|294496400|ref|YP_003542893.1| - 0.15 11.8 0.7 0.28 10.9 0.7 1.5 1 0 0 1 1 1 0 zinc-ribbon domain TPP_enzyme_N PF02776.18 gi|294496401|ref|YP_003542894.1| - 3e-09 36.7 0.0 3.7e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HipN PF18253.1 gi|294496401|ref|YP_003542894.1| - 0.028 14.1 0.0 0.069 12.8 0.0 1.6 1 0 0 1 1 1 0 Hsp70-interacting protein N N-terminal domain TPP_enzyme_C PF02775.21 gi|294496402|ref|YP_003542895.1| - 2.7e-21 75.9 0.5 4.8e-21 75.2 0.5 1.3 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HcyBio PF01837.16 gi|294496403|ref|YP_003542896.1| - 6.7e-102 340.9 0.0 7.6e-102 340.7 0.0 1.0 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation Fer4_7 PF12838.7 gi|294496403|ref|YP_003542896.1| - 0.0058 17.2 9.6 0.046 14.3 10.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|294496403|ref|YP_003542896.1| - 0.019 15.5 0.1 0.019 15.5 0.1 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_2 PF12797.7 gi|294496403|ref|YP_003542896.1| - 0.053 13.6 10.6 0.71 10.1 1.3 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.6 gi|294496403|ref|YP_003542896.1| - 0.063 13.5 8.7 0.15 12.3 8.7 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294496403|ref|YP_003542896.1| - 0.22 11.7 11.7 0.28 11.3 0.9 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|294496403|ref|YP_003542896.1| - 0.56 11.0 0.1 0.56 11.0 0.1 2.9 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|294496403|ref|YP_003542896.1| - 0.63 10.2 11.3 2.6 8.2 2.1 2.6 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|294496403|ref|YP_003542896.1| - 0.97 9.4 10.4 3.4 7.6 0.7 3.0 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|294496403|ref|YP_003542896.1| - 1.2 9.6 8.7 0.46 11.0 0.2 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294496403|ref|YP_003542896.1| - 3 8.1 9.5 1.8 8.8 2.8 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294496403|ref|YP_003542896.1| - 3.6 8.2 12.5 10 6.7 2.8 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294496403|ref|YP_003542896.1| - 9.4 7.0 13.0 20 6.0 3.6 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Na_H_Exchanger PF00999.21 gi|294496404|ref|YP_003542897.1| - 4.1e-69 233.2 51.6 6.1e-69 232.6 51.6 1.2 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|294496404|ref|YP_003542897.1| - 2.9e-24 85.6 0.1 1.5e-23 83.2 0.1 2.1 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|294496404|ref|YP_003542897.1| - 9.8e-17 60.6 2.0 2e-16 59.5 0.5 2.4 2 0 0 2 2 2 1 TrkA-C domain 2-Hacid_dh_C PF02826.19 gi|294496404|ref|YP_003542897.1| - 0.023 14.1 0.0 0.044 13.1 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PrpR_N PF06506.11 gi|294496404|ref|YP_003542897.1| - 0.098 12.2 0.0 0.33 10.5 0.0 1.9 1 0 0 1 1 1 0 Propionate catabolism activator DUF1538 PF07556.11 gi|294496405|ref|YP_003542898.1| - 8e-70 234.4 23.9 9.6e-70 234.2 23.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) DUF1538 PF07556.11 gi|294496406|ref|YP_003542899.1| - 2.8e-67 226.1 22.6 3.2e-67 225.9 22.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) P-II PF00543.22 gi|294496407|ref|YP_003542900.1| - 0.00011 22.7 0.2 0.00014 22.4 0.2 1.1 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF1797 PF08796.10 gi|294496408|ref|YP_003542901.1| - 0.00031 20.8 0.5 0.00094 19.2 0.5 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1797) Katanin_con80 PF13925.6 gi|294496408|ref|YP_003542901.1| - 0.039 14.0 0.3 20 5.2 0.0 3.0 3 0 0 3 3 3 0 con80 domain of Katanin tRNA-synt_1b PF00579.25 gi|294496409|ref|YP_003542902.1| - 6.4e-54 183.3 0.0 7.2e-54 183.1 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|294496409|ref|YP_003542902.1| - 0.00059 18.9 0.0 0.2 10.6 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) Msg2_C PF12373.8 gi|294496409|ref|YP_003542902.1| - 0.067 12.6 0.1 0.14 11.6 0.1 1.5 1 0 0 1 1 1 0 Major surface glycoprotein 2 C terminal Thg1 PF04446.12 gi|294496410|ref|YP_003542903.1| - 1.3e-23 83.4 0.2 2e-23 82.7 0.2 1.3 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.6 gi|294496410|ref|YP_003542903.1| - 3.1e-07 30.6 0.4 5.3e-07 29.8 0.4 1.3 1 0 0 1 1 1 1 Thg1 C terminal domain PRC PF05239.16 gi|294496411|ref|YP_003542904.1| - 8.6e-13 48.2 2.4 1.1e-12 47.8 2.4 1.1 1 0 0 1 1 1 1 PRC-barrel domain RNase_H_2 PF13482.6 gi|294496412|ref|YP_003542905.1| - 8.2e-38 130.0 0.1 1.2e-37 129.4 0.1 1.3 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo1 PF03104.19 gi|294496412|ref|YP_003542905.1| - 0.0028 16.9 0.3 0.008 15.4 0.1 1.7 1 1 1 2 2 2 1 DNA polymerase family B, exonuclease domain HHH_5 PF14520.6 gi|294496412|ref|YP_003542905.1| - 0.041 14.5 0.0 0.11 13.2 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain DNA_pol_B_exo2 PF10108.9 gi|294496412|ref|YP_003542905.1| - 0.045 13.4 0.1 0.52 10.0 0.0 2.1 1 1 1 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Cdd1 PF11731.8 gi|294496412|ref|YP_003542905.1| - 0.15 12.3 0.0 0.7 10.2 0.0 2.0 2 0 0 2 2 2 0 Pathogenicity locus UvrC_HhH_N PF08459.11 gi|294496413|ref|YP_003542906.1| - 5.3e-55 185.6 0.0 1.5e-54 184.1 0.0 1.8 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.24 gi|294496413|ref|YP_003542906.1| - 7.8e-13 48.5 0.3 2.1e-12 47.1 0.3 1.8 1 0 0 1 1 1 1 GIY-YIG catalytic domain HHH_5 PF14520.6 gi|294496413|ref|YP_003542906.1| - 1.4e-09 38.4 2.0 1.4e-09 38.4 2.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain UVR PF02151.19 gi|294496413|ref|YP_003542906.1| - 4.2e-09 35.9 0.9 1e-08 34.6 0.1 2.2 2 0 0 2 2 2 1 UvrB/uvrC motif HHH_2 PF12826.7 gi|294496413|ref|YP_003542906.1| - 1.5e-08 34.6 0.5 1.5e-08 34.6 0.5 2.6 4 0 0 4 4 4 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|294496413|ref|YP_003542906.1| - 0.00057 20.4 0.4 0.00057 20.4 0.4 2.9 4 0 0 4 4 4 1 5'-3' exonuclease, C-terminal SAM fold HHH PF00633.23 gi|294496413|ref|YP_003542906.1| - 0.017 15.0 0.8 3.7 7.6 0.0 2.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif T5orf172 PF10544.9 gi|294496413|ref|YP_003542906.1| - 0.071 13.7 0.2 0.071 13.7 0.2 2.2 2 0 0 2 2 2 0 T5orf172 domain Usp PF00582.26 gi|294496414|ref|YP_003542907.1| - 7e-31 107.6 0.0 8e-31 107.4 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family GARS_N PF02844.15 gi|294496414|ref|YP_003542907.1| - 0.11 13.3 0.0 0.15 12.8 0.0 1.5 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain CxxCxxCC PF03692.15 gi|294496415|ref|YP_003542908.1| - 1.2e-11 45.1 2.9 2.3e-11 44.2 2.9 1.6 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Radical_SAM PF04055.21 gi|294496416|ref|YP_003542909.1| - 2e-22 80.4 0.1 2.7e-22 79.9 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|294496416|ref|YP_003542909.1| - 2.1e-06 27.8 0.0 3.6e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain Peptidase_M50 PF02163.22 gi|294496417|ref|YP_003542910.1| - 3e-13 49.6 10.8 2e-06 27.3 0.2 2.7 2 1 1 3 3 3 2 Peptidase family M50 DUF126 PF01989.16 gi|294496418|ref|YP_003542911.1| - 3.7e-34 116.4 0.2 3.7e-34 116.4 0.2 1.4 2 0 0 2 2 2 1 Aconitase X swivel domain DUF521 PF04412.13 gi|294496419|ref|YP_003542912.1| - 7.8e-158 525.4 0.7 8.7e-158 525.2 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) zinc_ribbon_4 PF13717.6 gi|294496419|ref|YP_003542912.1| - 0.016 15.1 6.0 9.9 6.2 0.2 4.5 5 0 0 5 5 5 0 zinc-ribbon domain CoA_binding_2 PF13380.6 gi|294496419|ref|YP_003542912.1| - 0.035 14.6 0.2 0.081 13.4 0.2 1.5 1 0 0 1 1 1 0 CoA binding domain UbiD PF01977.16 gi|294496420|ref|YP_003542913.1| - 1.6e-108 363.2 0.2 1.8e-108 363.0 0.2 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CofC PF01983.16 gi|294496420|ref|YP_003542913.1| - 0.065 12.4 0.1 0.13 11.5 0.1 1.4 1 0 0 1 1 1 0 Guanylyl transferase CofC like Gln-synt_N_2 PF16952.5 gi|294496420|ref|YP_003542913.1| - 0.095 12.5 0.0 0.23 11.3 0.0 1.7 1 0 0 1 1 1 0 Glutamine synthetase N-terminal domain RPN5_C PF18098.1 gi|294496421|ref|YP_003542914.1| - 0.036 14.2 0.2 0.9 9.7 0.0 2.6 3 0 0 3 3 3 0 26S proteasome regulatory subunit RPN5 C-terminal domain DUF3887 PF13026.6 gi|294496421|ref|YP_003542914.1| - 0.074 13.9 0.2 0.3 11.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3887) AP_endonuc_2 PF01261.24 gi|294496422|ref|YP_003542915.1| - 1.4e-24 86.7 0.1 1.8e-24 86.4 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Glyco_hydro_97 PF10566.9 gi|294496422|ref|YP_003542915.1| - 0.037 13.3 0.0 0.049 12.9 0.0 1.1 1 0 0 1 1 1 0 Glycoside hydrolase 97 Peptidase_S66C PF17676.1 gi|294496422|ref|YP_003542915.1| - 0.12 12.9 0.0 0.2 12.2 0.0 1.3 1 0 0 1 1 1 0 LD-carboxypeptidase C-terminal domain UvdE PF03851.14 gi|294496422|ref|YP_003542915.1| - 0.16 11.2 0.0 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 UV-endonuclease UvdE MtrE PF04206.12 gi|294496423|ref|YP_003542916.1| - 6.6e-138 458.5 12.6 7.6e-138 458.3 12.6 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E SNARE_assoc PF09335.11 gi|294496423|ref|YP_003542916.1| - 0.021 15.3 8.4 0.021 15.3 8.4 2.4 2 1 0 2 2 2 0 SNARE associated Golgi protein Wzy_C PF04932.15 gi|294496423|ref|YP_003542916.1| - 0.069 12.8 0.3 0.069 12.8 0.3 2.8 2 1 0 2 2 2 0 O-Antigen ligase MtrD PF04207.12 gi|294496424|ref|YP_003542917.1| - 1.4e-102 342.0 28.8 1.7e-102 341.8 28.8 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrC PF04211.13 gi|294496425|ref|YP_003542918.1| - 3.7e-114 380.3 32.1 4.3e-114 380.1 32.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C MtrB PF05440.12 gi|294496426|ref|YP_003542919.1| - 6.1e-40 135.5 0.1 7.2e-40 135.3 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B HSBP1 PF06825.12 gi|294496426|ref|YP_003542919.1| - 0.084 12.8 0.4 0.11 12.4 0.4 1.3 1 0 0 1 1 1 0 Heat shock factor binding protein 1 MtrF PF09472.10 gi|294496426|ref|YP_003542919.1| - 0.11 11.9 1.3 0.25 10.8 0.4 1.8 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) Spore_YhaL PF14147.6 gi|294496426|ref|YP_003542919.1| - 2.1 8.1 4.0 4.1 7.2 4.0 1.4 1 0 0 1 1 1 0 Sporulation protein YhaL MtrA PF04208.14 gi|294496427|ref|YP_003542920.1| - 1.4e-85 285.3 0.7 1.7e-85 285.0 0.7 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.10 gi|294496427|ref|YP_003542920.1| - 0.045 13.2 0.2 0.12 11.8 0.2 1.7 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrF PF09472.10 gi|294496428|ref|YP_003542921.1| - 2.5e-30 103.6 1.6 2.8e-30 103.5 1.6 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrG PF04210.13 gi|294496429|ref|YP_003542922.1| - 6.1e-33 112.5 0.8 7e-33 112.3 0.8 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G Osmo_CC PF08946.10 gi|294496429|ref|YP_003542922.1| - 0.15 12.3 1.1 0.27 11.5 1.2 1.4 1 1 0 1 1 1 0 Osmosensory transporter coiled coil MtrH PF02007.18 gi|294496430|ref|YP_003542923.1| - 8.9e-132 438.7 1.1 1e-131 438.5 1.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit HhH-GPD PF00730.25 gi|294496431|ref|YP_003542924.1| - 4.9e-23 81.6 0.1 6.7e-23 81.2 0.1 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|294496431|ref|YP_003542924.1| - 1.5e-10 40.4 0.1 7.4e-10 38.2 0.0 2.3 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|294496431|ref|YP_003542924.1| - 0.017 15.7 0.0 0.55 10.9 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.9 gi|294496431|ref|YP_003542924.1| - 0.019 15.3 5.0 0.035 14.5 5.0 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III DUF2400 PF09674.10 gi|294496431|ref|YP_003542924.1| - 0.11 12.5 0.1 0.26 11.3 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) HHH_2 PF12826.7 gi|294496431|ref|YP_003542924.1| - 0.16 12.1 0.0 1.6 8.9 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF4139 PF13598.6 gi|294496432|ref|YP_003542925.1| - 4.5e-07 29.8 0.0 8.9e-07 28.8 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4139) DUF4140 PF13600.6 gi|294496432|ref|YP_003542925.1| - 0.013 15.9 0.0 0.035 14.5 0.0 1.7 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) CCG PF02754.16 gi|294496433|ref|YP_003542926.1| - 2.1e-34 117.6 1.3 3.9e-18 65.4 0.8 2.2 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|294496434|ref|YP_003542927.1| - 1.2e-10 41.6 8.2 2.3e-10 40.7 8.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294496434|ref|YP_003542927.1| - 2.8e-09 36.9 6.7 4.9e-09 36.2 6.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|294496434|ref|YP_003542927.1| - 4.5e-08 33.5 8.8 7.1e-08 32.9 8.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294496434|ref|YP_003542927.1| - 1.6e-07 31.4 8.6 3.1e-07 30.5 8.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|294496434|ref|YP_003542927.1| - 2.9e-07 31.0 10.6 1.5e-06 28.7 11.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294496434|ref|YP_003542927.1| - 0.00017 21.5 10.7 0.004 17.2 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|294496434|ref|YP_003542927.1| - 0.00022 20.9 13.3 0.0088 15.8 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|294496434|ref|YP_003542927.1| - 0.00033 20.7 5.7 0.00063 19.8 5.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294496434|ref|YP_003542927.1| - 0.081 13.9 14.1 3.4 8.7 4.1 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|294496434|ref|YP_003542927.1| - 0.3 11.3 8.4 0.43 10.8 0.6 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|294496434|ref|YP_003542927.1| - 0.37 11.8 18.2 0.24 12.4 3.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|294496434|ref|YP_003542927.1| - 0.65 10.6 12.7 0.37 11.4 4.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|294496434|ref|YP_003542927.1| - 0.93 9.3 6.8 2 8.2 0.7 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.6 gi|294496434|ref|YP_003542927.1| - 1.1 10.0 5.6 2.7 8.8 1.1 2.5 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|294496434|ref|YP_003542927.1| - 1.8 9.5 12.5 6.7 7.6 1.5 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294496434|ref|YP_003542927.1| - 2.2 8.5 12.1 1.1 9.4 1.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Gln-synt_C PF00120.24 gi|294496435|ref|YP_003542928.1| - 3e-138 460.5 0.0 3.6e-138 460.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|294496435|ref|YP_003542928.1| - 4e-30 103.4 0.1 9.9e-30 102.1 0.1 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|294496435|ref|YP_003542928.1| - 7.4e-05 22.5 0.0 0.00046 20.0 0.0 2.2 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain GATase_6 PF13522.6 gi|294496436|ref|YP_003542929.1| - 4.3e-13 49.6 0.0 5.6e-10 39.5 0.0 2.2 1 1 1 2 2 2 2 Glutamine amidotransferase domain GATase_2 PF00310.21 gi|294496436|ref|YP_003542929.1| - 2.5e-10 39.7 0.5 2e-08 33.4 0.5 2.1 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_7 PF13537.6 gi|294496436|ref|YP_003542929.1| - 2.3e-07 30.7 0.0 0.016 15.1 0.0 2.2 2 0 0 2 2 2 2 Glutamine amidotransferase domain Glu_synthase PF01645.17 gi|294496437|ref|YP_003542930.1| - 1.9e-137 458.3 0.1 1.9e-137 458.3 0.1 1.4 2 0 0 2 2 2 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|294496437|ref|YP_003542930.1| - 5.3e-15 55.7 0.1 1.5e-07 31.2 0.0 2.4 2 1 0 2 2 2 2 Glutamate synthase central domain FMN_dh PF01070.18 gi|294496437|ref|YP_003542930.1| - 6.6e-11 41.8 5.1 6.5e-08 32.0 1.9 3.1 3 0 0 3 3 3 1 FMN-dependent dehydrogenase Fer4_7 PF12838.7 gi|294496437|ref|YP_003542930.1| - 1.7e-09 38.1 12.9 2.2e-07 31.3 9.2 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294496437|ref|YP_003542930.1| - 1.4e-08 35.6 7.7 0.00023 22.0 0.2 3.5 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain IMPDH PF00478.25 gi|294496437|ref|YP_003542930.1| - 1.4e-08 34.1 8.8 6.6e-07 28.6 8.1 2.8 2 1 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Fer4_9 PF13187.6 gi|294496437|ref|YP_003542930.1| - 1.9e-08 34.3 15.7 2.2e-07 30.9 11.4 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain NMO PF03060.15 gi|294496437|ref|YP_003542930.1| - 2.9e-08 33.5 3.6 5.4e-08 32.6 3.6 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4_10 PF13237.6 gi|294496437|ref|YP_003542930.1| - 1.1e-07 31.9 18.1 0.0014 18.7 15.2 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|294496437|ref|YP_003542930.1| - 1.1e-07 31.4 18.2 6.3e-06 25.8 1.4 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|294496437|ref|YP_003542930.1| - 4.4e-06 26.7 10.6 4.4e-06 26.7 10.6 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294496437|ref|YP_003542930.1| - 7.2e-06 25.9 22.9 5.8e-05 23.0 1.9 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294496437|ref|YP_003542930.1| - 5.1e-05 23.7 10.4 0.11 13.0 0.5 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|294496437|ref|YP_003542930.1| - 6.5e-05 23.3 9.9 0.077 13.5 0.2 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294496437|ref|YP_003542930.1| - 0.00048 20.1 10.5 0.0059 16.6 1.8 3.8 4 0 0 4 4 3 2 4Fe-4S binding domain DHO_dh PF01180.21 gi|294496437|ref|YP_003542930.1| - 0.00057 19.2 0.8 0.011 15.0 0.7 2.3 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|294496437|ref|YP_003542930.1| - 0.0013 18.3 0.3 0.0022 17.5 0.3 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein Fer4_15 PF13459.6 gi|294496437|ref|YP_003542930.1| - 0.04 14.7 14.4 0.045 14.5 2.6 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|294496437|ref|YP_003542930.1| - 0.045 14.3 18.7 0.079 13.5 1.6 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|294496437|ref|YP_003542930.1| - 0.15 12.9 11.6 2.5 9.0 0.8 3.2 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|294496437|ref|YP_003542930.1| - 0.43 10.7 4.0 1.2 9.3 4.0 1.7 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster GXGXG PF01493.19 gi|294496438|ref|YP_003542931.1| - 9e-39 133.0 8.9 1.1e-38 132.7 8.9 1.1 1 0 0 1 1 1 1 GXGXG motif FrhB_FdhB_C PF04432.13 gi|294496439|ref|YP_003542932.1| - 4.6e-36 124.0 0.0 7.3e-36 123.3 0.0 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|294496439|ref|YP_003542932.1| - 3.6e-18 65.5 0.1 7.2e-18 64.5 0.1 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_6 PF12837.7 gi|294496439|ref|YP_003542932.1| - 2.6e-08 33.6 12.7 1.4e-06 28.1 2.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|294496439|ref|YP_003542932.1| - 1.5e-07 31.4 9.3 4.4e-07 29.9 9.3 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|294496439|ref|YP_003542932.1| - 2.5e-07 30.2 2.7 2.5e-07 30.2 2.7 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294496439|ref|YP_003542932.1| - 8.8e-06 26.2 8.3 8.8e-06 26.2 8.3 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|294496439|ref|YP_003542932.1| - 5.8e-05 23.2 7.9 5.8e-05 23.2 7.9 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294496439|ref|YP_003542932.1| - 0.00017 21.5 3.0 0.00017 21.5 3.0 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|294496439|ref|YP_003542932.1| - 0.00026 21.5 5.0 0.013 16.0 0.6 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294496439|ref|YP_003542932.1| - 0.00057 20.2 17.2 0.0013 19.1 1.9 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|294496439|ref|YP_003542932.1| - 0.00069 20.0 5.3 0.081 13.4 1.1 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294496439|ref|YP_003542932.1| - 0.0013 19.6 12.2 0.31 12.0 9.9 3.3 2 1 1 3 3 3 1 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|294496439|ref|YP_003542932.1| - 0.025 15.1 7.1 0.27 11.8 0.7 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|294496439|ref|YP_003542932.1| - 0.066 14.2 14.2 1.6 9.8 7.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|294496439|ref|YP_003542932.1| - 0.4 11.5 7.2 0.21 12.5 0.7 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|294496439|ref|YP_003542932.1| - 0.54 11.0 7.6 0.54 11.0 0.6 3.5 4 0 0 4 4 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|294496439|ref|YP_003542932.1| - 1.8 8.7 8.2 67 3.7 8.2 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|294496439|ref|YP_003542932.1| - 4.5 7.5 18.9 2.5 8.3 12.5 3.0 3 1 0 3 3 2 0 4Fe-4S dicluster domain Exonuc_VII_L PF02601.15 gi|294496440|ref|YP_003542933.1| - 1e-86 291.3 0.0 3.4e-78 263.3 0.1 2.1 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 gi|294496440|ref|YP_003542933.1| - 2.4e-31 107.8 0.3 5.2e-31 106.7 0.3 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|294496440|ref|YP_003542933.1| - 2.1e-08 34.0 0.1 5.5e-08 32.7 0.0 1.8 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain RecJ_OB PF17768.1 gi|294496440|ref|YP_003542933.1| - 0.0034 17.6 0.0 0.0071 16.6 0.0 1.5 1 0 0 1 1 1 1 RecJ OB domain Mod_r PF07200.13 gi|294496440|ref|YP_003542933.1| - 0.09 12.9 0.9 0.17 12.0 0.4 1.6 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein RNA_pol_Rpb4 PF03874.16 gi|294496440|ref|YP_003542933.1| - 0.11 12.8 0.0 1.6 9.0 0.0 2.2 2 0 0 2 2 2 0 RNA polymerase Rpb4 YscO-like PF16789.5 gi|294496440|ref|YP_003542933.1| - 0.13 12.3 1.4 14 5.7 0.3 2.2 2 0 0 2 2 2 0 YscO-like protein TM140 PF14985.6 gi|294496440|ref|YP_003542933.1| - 0.2 11.2 0.0 0.31 10.6 0.0 1.2 1 0 0 1 1 1 0 TM140 protein family Apolipoprotein PF01442.18 gi|294496440|ref|YP_003542933.1| - 0.82 9.5 4.6 0.2 11.5 1.5 1.5 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain Exonuc_VII_S PF02609.16 gi|294496441|ref|YP_003542934.1| - 1.3e-18 66.7 4.7 1.8e-18 66.3 4.7 1.2 1 0 0 1 1 1 1 Exonuclease VII small subunit DUF810 PF05664.11 gi|294496441|ref|YP_003542934.1| - 0.014 14.0 0.6 0.014 14.0 0.6 1.0 1 0 0 1 1 1 0 Plant family of unknown function (DUF810) GIT_CC PF16559.5 gi|294496441|ref|YP_003542934.1| - 0.018 14.9 0.6 0.38 10.7 0.4 2.3 1 1 0 1 1 1 0 GIT coiled-coil Rho guanine nucleotide exchange factor ABC_tran_CTD PF16326.5 gi|294496441|ref|YP_003542934.1| - 0.27 11.5 7.8 0.5 10.7 7.8 1.5 1 1 0 1 1 1 0 ABC transporter C-terminal domain ATPase PF06745.13 gi|294496442|ref|YP_003542935.1| - 2.5e-69 233.1 8.5 1e-45 155.9 2.1 2.7 2 1 0 2 2 2 2 KaiC DnaB_C PF03796.15 gi|294496442|ref|YP_003542935.1| - 2.9e-12 46.5 0.0 7.6e-07 28.7 0.0 2.3 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|294496442|ref|YP_003542935.1| - 2.3e-09 37.1 0.1 0.0012 18.5 0.0 3.0 2 1 0 2 2 2 2 AAA domain GvpD PF07088.11 gi|294496442|ref|YP_003542935.1| - 1.3e-07 30.6 3.5 0.24 10.0 0.0 4.3 4 1 1 5 5 5 3 GvpD gas vesicle protein AAA_16 PF13191.6 gi|294496442|ref|YP_003542935.1| - 1.6e-07 31.9 0.0 0.0037 17.7 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain RecA PF00154.21 gi|294496442|ref|YP_003542935.1| - 4.5e-07 29.6 0.1 0.02 14.4 0.0 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|294496442|ref|YP_003542935.1| - 1.1e-06 28.6 0.1 0.004 16.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain Rad51 PF08423.11 gi|294496442|ref|YP_003542935.1| - 2.5e-06 26.9 0.1 0.00058 19.2 0.1 2.5 2 0 0 2 2 2 1 Rad51 AAA_14 PF13173.6 gi|294496442|ref|YP_003542935.1| - 6.4e-06 26.2 0.1 0.0019 18.2 0.0 3.1 2 2 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|294496442|ref|YP_003542935.1| - 7.6e-06 26.3 0.0 0.013 15.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|294496442|ref|YP_003542935.1| - 1.8e-05 24.5 0.1 0.048 13.4 0.0 2.7 3 0 0 3 3 3 2 IstB-like ATP binding protein DUF2075 PF09848.9 gi|294496442|ref|YP_003542935.1| - 2.1e-05 23.9 0.2 0.1 11.8 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_18 PF13238.6 gi|294496442|ref|YP_003542935.1| - 3.2e-05 24.5 0.2 0.011 16.3 0.0 2.6 2 1 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|294496442|ref|YP_003542935.1| - 8.5e-05 21.7 0.1 0.16 11.0 0.1 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein NACHT PF05729.12 gi|294496442|ref|YP_003542935.1| - 0.0001 22.3 0.0 0.089 12.7 0.0 2.7 2 0 0 2 2 2 1 NACHT domain AAA_7 PF12775.7 gi|294496442|ref|YP_003542935.1| - 0.00012 21.7 0.2 0.22 11.0 0.1 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|294496442|ref|YP_003542935.1| - 0.0002 21.4 0.1 0.0018 18.2 0.0 2.2 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea PAXNEB PF05625.11 gi|294496442|ref|YP_003542935.1| - 0.00022 20.5 2.0 0.12 11.5 0.2 3.0 2 1 0 3 3 3 1 PAXNEB protein AAA_19 PF13245.6 gi|294496442|ref|YP_003542935.1| - 0.00025 21.4 0.0 0.38 11.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|294496442|ref|YP_003542935.1| - 0.00026 20.7 0.1 0.46 10.2 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain TrwB_AAD_bind PF10412.9 gi|294496442|ref|YP_003542935.1| - 0.0003 19.8 0.0 0.0096 14.9 0.0 2.5 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain MEDS PF14417.6 gi|294496442|ref|YP_003542935.1| - 0.0003 20.6 0.0 0.00094 19.0 0.0 1.8 2 0 0 2 2 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PhoH PF02562.16 gi|294496442|ref|YP_003542935.1| - 0.00034 20.1 0.0 0.17 11.3 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein AAA PF00004.29 gi|294496442|ref|YP_003542935.1| - 0.00045 20.6 0.1 1 9.8 0.0 3.0 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) ResIII PF04851.15 gi|294496442|ref|YP_003542935.1| - 0.00069 19.7 0.0 1.1 9.3 0.0 2.7 3 0 0 3 3 2 1 Type III restriction enzyme, res subunit Zeta_toxin PF06414.12 gi|294496442|ref|YP_003542935.1| - 0.0013 18.0 0.9 0.28 10.4 0.1 2.4 2 0 0 2 2 2 1 Zeta toxin Roc PF08477.13 gi|294496442|ref|YP_003542935.1| - 0.0016 18.6 0.2 1.1 9.5 0.0 3.3 3 0 0 3 3 3 1 Ras of Complex, Roc, domain of DAPkinase DAP3 PF10236.9 gi|294496442|ref|YP_003542935.1| - 0.0022 17.2 0.0 2.3 7.3 0.0 2.5 2 0 0 2 2 2 2 Mitochondrial ribosomal death-associated protein 3 CbiA PF01656.23 gi|294496442|ref|YP_003542935.1| - 0.0024 17.9 0.6 0.0056 16.7 0.3 1.9 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|294496442|ref|YP_003542935.1| - 0.0024 17.6 0.0 0.15 11.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|294496442|ref|YP_003542935.1| - 0.0047 17.3 0.0 1.6 9.1 0.0 2.6 2 0 0 2 2 2 1 RNA helicase cobW PF02492.19 gi|294496442|ref|YP_003542935.1| - 0.0055 16.3 0.5 2.6 7.6 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_11 PF13086.6 gi|294496442|ref|YP_003542935.1| - 0.013 15.3 0.0 5.3 6.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain ArsA_ATPase PF02374.15 gi|294496442|ref|YP_003542935.1| - 0.014 14.6 0.2 0.038 13.2 0.0 1.8 2 0 0 2 2 2 0 Anion-transporting ATPase NB-ARC PF00931.22 gi|294496442|ref|YP_003542935.1| - 0.014 14.6 1.1 0.076 12.2 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain NTPase_1 PF03266.15 gi|294496442|ref|YP_003542935.1| - 0.014 15.3 0.3 0.88 9.5 0.1 2.9 2 0 0 2 2 2 0 NTPase KdpD PF02702.17 gi|294496442|ref|YP_003542935.1| - 0.019 14.5 0.0 0.35 10.3 0.0 2.3 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain AAA_5 PF07728.14 gi|294496442|ref|YP_003542935.1| - 0.02 14.9 0.2 2.2 8.3 0.0 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|294496442|ref|YP_003542935.1| - 0.031 13.5 0.4 7.1 5.7 0.0 2.3 2 0 0 2 2 2 0 TIP49 P-loop domain Hpr_kinase_C PF07475.12 gi|294496442|ref|YP_003542935.1| - 0.031 13.8 4.1 0.99 8.9 0.1 3.4 4 0 0 4 4 3 0 HPr Serine kinase C-terminal domain AAA_33 PF13671.6 gi|294496442|ref|YP_003542935.1| - 0.032 14.4 0.0 3.6 7.7 0.0 2.6 3 0 0 3 3 2 0 AAA domain SRP54 PF00448.22 gi|294496442|ref|YP_003542935.1| - 0.034 13.8 0.1 0.084 12.5 0.0 1.8 2 0 0 2 2 1 0 SRP54-type protein, GTPase domain AAA_31 PF13614.6 gi|294496442|ref|YP_003542935.1| - 0.039 13.9 0.0 0.074 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zot PF05707.12 gi|294496442|ref|YP_003542935.1| - 0.05 13.3 0.0 3.3 7.3 0.0 2.4 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) ATP-synt_ab PF00006.25 gi|294496442|ref|YP_003542935.1| - 0.057 13.1 0.1 0.58 9.8 0.0 2.3 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain ABC_tran PF00005.27 gi|294496442|ref|YP_003542935.1| - 0.065 13.7 0.4 1.7 9.2 0.0 2.5 2 0 0 2 2 2 0 ABC transporter RuvB_N PF05496.12 gi|294496442|ref|YP_003542935.1| - 0.12 12.1 0.0 2.3 7.9 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain TsaE PF02367.17 gi|294496442|ref|YP_003542935.1| - 0.13 12.2 2.0 7.7 6.5 0.1 3.1 2 1 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Herpes_TK PF00693.18 gi|294496442|ref|YP_003542935.1| - 0.16 11.2 0.2 4.6 6.4 0.1 2.2 2 0 0 2 2 2 0 Thymidine kinase from herpesvirus Mg_chelatase PF01078.21 gi|294496442|ref|YP_003542935.1| - 0.21 10.9 0.3 20 4.5 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI OrfB_IS605 PF01385.19 gi|294496443|ref|YP_003542936.1| - 1.9e-28 99.1 2.1 3.6e-28 98.2 2.1 1.4 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|294496443|ref|YP_003542936.1| - 5.1e-22 77.1 2.2 1.2e-21 75.9 2.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 gi|294496443|ref|YP_003542936.1| - 5.1e-21 74.4 0.8 1e-20 73.4 0.8 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-piccolo PF05715.13 gi|294496443|ref|YP_003542936.1| - 0.016 15.3 0.9 0.033 14.3 0.9 1.5 1 0 0 1 1 1 0 Piccolo Zn-finger Zn_Tnp_IS1595 PF12760.7 gi|294496443|ref|YP_003542936.1| - 0.043 13.8 1.5 0.081 12.9 1.5 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain RuvC_1 PF18516.1 gi|294496443|ref|YP_003542936.1| - 0.064 12.4 5.3 0.12 11.5 5.3 1.5 1 1 0 1 1 1 0 RuvC nuclease domain zf-RanBP PF00641.18 gi|294496443|ref|YP_003542936.1| - 4.5 6.7 8.3 4.7 6.6 0.7 2.4 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others MarR PF01047.22 gi|294496444|ref|YP_003542937.1| - 2e-06 27.6 0.2 6.6e-06 26.0 0.1 1.7 1 1 1 2 2 2 1 MarR family HTH_45 PF14947.6 gi|294496444|ref|YP_003542937.1| - 5e-06 26.4 0.2 6.1e-06 26.1 0.2 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|294496444|ref|YP_003542937.1| - 7.7e-06 25.4 0.2 1.4e-05 24.5 0.1 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|294496444|ref|YP_003542937.1| - 2.6e-05 24.0 0.0 3.3e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|294496444|ref|YP_003542937.1| - 0.0008 19.2 0.1 0.0016 18.2 0.0 1.5 1 1 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|294496444|ref|YP_003542937.1| - 0.0026 17.6 0.1 0.0031 17.4 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TBPIP PF07106.13 gi|294496444|ref|YP_003542937.1| - 0.0058 16.5 0.8 0.25 11.3 0.2 2.2 1 1 1 2 2 2 1 TBPIP/Hop2 winged helix domain TFIIE_alpha PF02002.17 gi|294496444|ref|YP_003542937.1| - 0.008 16.0 0.1 0.0087 15.9 0.1 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit Rrf2 PF02082.20 gi|294496444|ref|YP_003542937.1| - 0.014 15.7 0.1 0.018 15.4 0.1 1.1 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.20 gi|294496444|ref|YP_003542937.1| - 0.018 14.9 0.2 0.026 14.4 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|294496444|ref|YP_003542937.1| - 0.026 14.3 0.1 0.058 13.1 0.1 1.6 1 1 1 2 2 2 0 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|294496444|ref|YP_003542937.1| - 0.034 14.2 0.1 0.047 13.7 0.0 1.3 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|294496444|ref|YP_003542937.1| - 0.059 13.3 0.0 0.1 12.6 0.0 1.5 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Fe_dep_repress PF01325.19 gi|294496444|ref|YP_003542937.1| - 0.1 12.8 0.2 0.14 12.4 0.2 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain gp32 PF08804.10 gi|294496444|ref|YP_003542937.1| - 0.1 12.6 0.1 0.11 12.6 0.1 1.1 1 0 0 1 1 1 0 gp32 DNA binding protein like HsbA PF12296.8 gi|294496444|ref|YP_003542937.1| - 0.11 13.0 0.0 0.13 12.7 0.0 1.2 1 0 0 1 1 1 0 Hydrophobic surface binding protein A Phage_rep_O PF04492.13 gi|294496444|ref|YP_003542937.1| - 0.12 12.9 0.1 0.14 12.8 0.1 1.2 1 0 0 1 1 1 0 Bacteriophage replication protein O RseC_MucC PF04246.12 gi|294496445|ref|YP_003542938.1| - 2.5 8.1 7.1 0.72 9.8 2.5 1.9 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Rpr2 PF04032.16 gi|294496446|ref|YP_003542939.1| - 1.4e-15 57.3 2.7 2.4e-15 56.6 2.7 1.4 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Lactamase_B_3 PF13483.6 gi|294496447|ref|YP_003542940.1| - 2.7e-30 105.4 0.1 3.2e-30 105.2 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|294496447|ref|YP_003542940.1| - 1e-14 54.6 0.1 2.7e-14 53.1 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|294496447|ref|YP_003542940.1| - 0.00029 20.9 1.9 0.28 11.1 0.5 2.2 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily DUF1699 PF08004.11 gi|294496448|ref|YP_003542941.1| - 3.9e-63 210.9 1.1 4.4e-63 210.8 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) AC_N PF16214.5 gi|294496449|ref|YP_003542942.1| - 1.8 7.6 5.5 1.8 7.6 5.5 1.0 1 0 0 1 1 1 0 Adenylyl cyclase N-terminal extracellular and transmembrane region DUF2207 PF09972.9 gi|294496449|ref|YP_003542942.1| - 2.1 7.0 4.5 2.3 6.9 4.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DHHA1 PF02272.19 gi|294496451|ref|YP_003542944.1| - 1e-16 61.6 1.5 2e-16 60.7 1.5 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|294496451|ref|YP_003542944.1| - 0.061 13.6 0.1 0.11 12.8 0.1 1.4 1 0 0 1 1 1 0 DHH family AstA PF04958.12 gi|294496451|ref|YP_003542944.1| - 0.068 11.7 0.0 0.13 10.8 0.0 1.4 1 0 0 1 1 1 0 Arginine N-succinyltransferase beta subunit NRD1_2 PF01995.16 gi|294496452|ref|YP_003542945.1| - 4.9e-95 317.3 2.2 5.5e-95 317.2 2.2 1.0 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 GPI PF06560.11 gi|294496453|ref|YP_003542946.1| - 2.1e-45 154.2 1.4 2.7e-45 153.9 1.4 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.11 gi|294496453|ref|YP_003542946.1| - 0.044 13.5 0.1 0.11 12.3 0.1 1.6 1 1 0 1 1 1 0 Cupin domain Metallophos_2 PF12850.7 gi|294496454|ref|YP_003542947.1| - 2.2e-11 44.2 0.0 4.5e-11 43.2 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|294496454|ref|YP_003542947.1| - 7.5e-11 42.9 0.1 1.4e-10 42.0 0.1 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Plug_translocon PF10559.9 gi|294496454|ref|YP_003542947.1| - 0.13 12.2 0.0 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 Plug domain of Sec61p CRISPR_Cas2 PF09827.9 gi|294496454|ref|YP_003542947.1| - 0.15 12.3 0.4 2 8.6 0.3 2.4 2 0 0 2 2 2 0 CRISPR associated protein Cas2 NETI PF14044.6 gi|294496454|ref|YP_003542947.1| - 0.15 11.8 1.8 0.64 9.8 0.6 2.4 2 0 0 2 2 2 0 NETI protein SMC_N PF02463.19 gi|294496455|ref|YP_003542948.1| - 2.2e-15 56.7 25.6 1.1e-09 38.1 0.1 3.3 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|294496455|ref|YP_003542948.1| - 4.7e-12 46.8 42.8 4.7e-12 46.8 42.8 6.3 1 1 3 4 4 4 1 AAA domain AAA_15 PF13175.6 gi|294496455|ref|YP_003542948.1| - 2.5e-09 37.4 23.3 2.5e-09 37.4 23.3 3.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 gi|294496455|ref|YP_003542948.1| - 2.8e-06 27.4 2.7 3.2e-05 23.9 0.7 4.2 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|294496455|ref|YP_003542948.1| - 1.2e-05 25.0 0.0 2.7e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|294496455|ref|YP_003542948.1| - 0.2 11.6 0.0 0.2 11.6 0.0 4.6 5 2 2 7 7 7 0 RsgA GTPase AAA_16 PF13191.6 gi|294496455|ref|YP_003542948.1| - 0.56 10.6 0.0 0.56 10.6 0.0 3.7 3 1 1 4 4 4 0 AAA ATPase domain DUF1843 PF08898.10 gi|294496455|ref|YP_003542948.1| - 1.6 9.2 7.9 2.6 8.6 0.1 3.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1843) AAA_13 PF13166.6 gi|294496455|ref|YP_003542948.1| - 2.2 6.8 95.4 0.69 8.5 14.6 4.6 2 1 1 4 4 4 0 AAA domain DUF4748 PF15932.5 gi|294496455|ref|YP_003542948.1| - 4.2 7.2 7.2 1.8 8.3 2.4 3.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4748) Baculo_PEP_C PF04513.12 gi|294496456|ref|YP_003542949.1| - 0.0087 16.1 2.3 0.013 15.6 2.3 1.2 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus COG2 PF06148.11 gi|294496456|ref|YP_003542949.1| - 0.0093 16.1 4.1 0.018 15.1 4.1 1.4 1 0 0 1 1 1 1 COG (conserved oligomeric Golgi) complex component, COG2 SKA2 PF16740.5 gi|294496456|ref|YP_003542949.1| - 0.017 14.9 3.6 0.035 13.9 3.6 1.5 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 NPV_P10 PF05531.12 gi|294496456|ref|YP_003542949.1| - 0.3 11.6 4.4 0.81 10.2 4.4 1.8 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Herpes_UL25 PF01499.16 gi|294496456|ref|YP_003542949.1| - 0.63 8.5 4.1 0.87 8.0 4.1 1.1 1 0 0 1 1 1 0 Herpesvirus UL25 family MFA1_2 PF17317.2 gi|294496456|ref|YP_003542949.1| - 1 9.2 4.2 0.34 10.7 0.3 2.3 2 0 0 2 2 2 0 Mating hormone A-factor 1&2 CcdA PF07362.12 gi|294496456|ref|YP_003542949.1| - 2.6 8.5 6.8 0.18 12.3 1.0 2.1 2 0 0 2 2 2 0 Post-segregation antitoxin CcdA XhlA PF10779.9 gi|294496456|ref|YP_003542949.1| - 9.8 6.5 10.7 7.9 6.8 1.1 2.7 2 0 0 2 2 2 0 Haemolysin XhlA DUF3139 PF11337.8 gi|294496456|ref|YP_003542949.1| - 9.9 6.9 7.6 1.5 9.5 2.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) SMC_N PF02463.19 gi|294496457|ref|YP_003542950.1| - 2.3e-67 226.6 26.1 1.4e-66 224.1 26.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|294496457|ref|YP_003542950.1| - 8.2e-34 116.4 0.0 4.7e-33 114.0 0.0 2.4 2 0 0 2 2 2 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.6 gi|294496457|ref|YP_003542950.1| - 1.4e-12 48.6 25.9 1.4e-12 48.6 25.9 7.5 2 2 1 3 3 1 1 AAA domain AAA_29 PF13555.6 gi|294496457|ref|YP_003542950.1| - 4.8e-07 29.4 0.0 1e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|294496457|ref|YP_003542950.1| - 1.8e-06 28.0 24.9 0.00013 21.9 0.3 4.8 3 2 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system IFT57 PF10498.9 gi|294496457|ref|YP_003542950.1| - 0.0001 21.4 98.8 0.0012 17.9 32.8 4.7 3 1 1 4 4 4 3 Intra-flagellar transport protein 57 AAA_15 PF13175.6 gi|294496457|ref|YP_003542950.1| - 0.00033 20.5 44.1 0.00033 20.5 44.1 5.4 2 2 1 3 3 1 1 AAA ATPase domain PspA_IM30 PF04012.12 gi|294496457|ref|YP_003542950.1| - 0.0011 18.6 13.3 0.0011 18.6 13.3 8.4 3 2 4 8 8 7 1 PspA/IM30 family APG6_N PF17675.1 gi|294496457|ref|YP_003542950.1| - 0.0025 18.3 145.5 0.044 14.3 11.3 8.8 2 2 4 8 8 8 4 Apg6 coiled-coil region Laminin_I PF06008.14 gi|294496457|ref|YP_003542950.1| - 0.0046 16.7 11.7 0.0046 16.7 11.7 5.8 2 2 3 5 5 5 1 Laminin Domain I DUF1664 PF07889.12 gi|294496457|ref|YP_003542950.1| - 0.0061 16.6 81.2 0.011 15.7 5.1 9.6 2 2 9 12 12 12 5 Protein of unknown function (DUF1664) FlxA PF14282.6 gi|294496457|ref|YP_003542950.1| - 0.007 16.3 4.8 0.007 16.3 4.8 8.3 4 1 3 7 7 5 1 FlxA-like protein DUF4472 PF14739.6 gi|294496457|ref|YP_003542950.1| - 0.0098 16.6 17.1 0.0098 16.6 17.1 8.8 4 3 5 10 10 9 1 Domain of unknown function (DUF4472) Spc7 PF08317.11 gi|294496457|ref|YP_003542950.1| - 0.24 10.2 134.8 0.1 11.5 30.0 8.0 2 2 5 8 8 8 0 Spc7 kinetochore protein T3SSipB PF16535.5 gi|294496457|ref|YP_003542950.1| - 0.74 10.3 61.0 0.25 11.8 6.1 6.5 2 2 4 6 6 5 0 Type III cell invasion protein SipB FPP PF05911.11 gi|294496457|ref|YP_003542950.1| - 0.9 7.6 116.6 0.0061 14.8 24.4 5.0 2 2 2 5 5 5 0 Filament-like plant protein, long coiled-coil DUF3584 PF12128.8 gi|294496457|ref|YP_003542950.1| - 1.4 6.3 113.5 0.072 10.6 38.8 3.9 2 2 2 4 4 4 0 Protein of unknown function (DUF3584) DUF4407 PF14362.6 gi|294496457|ref|YP_003542950.1| - 1.4 8.2 94.9 0.37 10.1 23.9 6.0 2 2 4 6 6 5 0 Domain of unknown function (DUF4407) ATG16 PF08614.11 gi|294496457|ref|YP_003542950.1| - 8.2 6.6 128.0 0.59 10.3 8.2 7.6 3 3 4 7 7 7 0 Autophagy protein 16 (ATG16) SMC_ScpA PF02616.14 gi|294496458|ref|YP_003542951.1| - 1.3e-21 77.7 4.6 3.3e-20 73.0 4.6 2.1 1 1 0 1 1 1 1 Segregation and condensation protein ScpA NLE PF08154.12 gi|294496458|ref|YP_003542951.1| - 0.065 13.8 0.0 9 6.9 0.0 2.7 2 0 0 2 2 2 0 NLE (NUC135) domain FAM176 PF14851.6 gi|294496458|ref|YP_003542951.1| - 2.7 7.6 8.4 1.7 8.3 2.4 2.2 1 1 1 2 2 2 0 FAM176 family SMC_ScpB PF04079.16 gi|294496459|ref|YP_003542952.1| - 3.2e-41 140.6 2.3 3e-39 134.2 0.1 2.9 2 1 1 3 3 3 2 Segregation and condensation complex subunit ScpB HTH_20 PF12840.7 gi|294496459|ref|YP_003542952.1| - 0.0056 16.7 0.0 0.023 14.8 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|294496459|ref|YP_003542952.1| - 0.0091 15.9 0.1 0.67 9.9 0.0 3.3 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB Ribosomal_S7e PF01251.18 gi|294496459|ref|YP_003542952.1| - 0.027 14.2 1.1 0.13 12.1 0.2 2.2 2 0 0 2 2 2 0 Ribosomal protein S7e APG17 PF04108.12 gi|294496459|ref|YP_003542952.1| - 0.053 12.6 0.2 0.053 12.6 0.2 1.6 2 0 0 2 2 2 0 Autophagy protein Apg17 TBP PF00352.21 gi|294496460|ref|YP_003542953.1| - 1e-56 188.8 0.2 2.4e-27 94.7 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|294496460|ref|YP_003542953.1| - 2.6e-08 33.8 0.0 0.0052 16.9 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) NdhS PF11623.8 gi|294496460|ref|YP_003542953.1| - 0.02 14.5 0.0 4.2 7.1 0.0 2.4 2 0 0 2 2 2 0 NAD(P)H dehydrogenase subunit S DUF218 PF02698.17 gi|294496460|ref|YP_003542953.1| - 0.083 12.9 0.0 9.5 6.3 0.0 2.2 1 1 1 2 2 2 0 DUF218 domain Glycos_transf_2 PF00535.26 gi|294496461|ref|YP_003542954.1| - 8.8e-18 64.7 0.0 1.4e-17 64.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|294496461|ref|YP_003542954.1| - 8.1e-07 29.1 0.0 1.1e-06 28.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|294496461|ref|YP_003542954.1| - 0.021 15.3 0.0 0.039 14.5 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF373 PF04123.13 gi|294496461|ref|YP_003542954.1| - 0.25 10.7 2.3 0.2 11.1 0.9 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF373) Tetraspanin PF00335.20 gi|294496461|ref|YP_003542954.1| - 0.41 10.3 4.1 0.6 9.8 4.1 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF4191 PF13829.6 gi|294496461|ref|YP_003542954.1| - 0.45 9.8 3.5 0.86 8.9 3.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) ThiC_Rad_SAM PF01964.18 gi|294496462|ref|YP_003542955.1| - 1.4e-167 557.8 1.1 1.6e-167 557.6 1.1 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Pro_isomerase PF00160.21 gi|294496463|ref|YP_003542956.1| - 1.2e-46 158.8 0.1 1.5e-46 158.6 0.1 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DUF4680 PF15730.5 gi|294496463|ref|YP_003542956.1| - 0.17 12.2 0.0 0.22 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4680) DUF166 PF02593.14 gi|294496465|ref|YP_003542958.1| - 3.1e-73 246.0 0.0 3.5e-73 245.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function CGGC PF08821.11 gi|294496466|ref|YP_003542959.1| - 7.5e-35 119.3 2.4 8.4e-35 119.2 2.4 1.0 1 0 0 1 1 1 1 CGGC domain zf-C2H2 PF00096.26 gi|294496466|ref|YP_003542959.1| - 0.035 14.6 3.6 0.19 12.2 0.2 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type Fer4_21 PF14697.6 gi|294496467|ref|YP_003542960.1| - 2.3e-09 37.2 8.7 2.3e-09 37.2 8.7 2.5 2 1 1 3 3 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|294496467|ref|YP_003542960.1| - 1.1e-08 34.6 17.7 1.3e-05 24.8 4.5 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294496467|ref|YP_003542960.1| - 1.9e-06 28.3 13.6 0.0026 18.3 0.9 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294496467|ref|YP_003542960.1| - 4.2e-06 26.6 3.7 4.2e-06 26.6 3.7 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|294496467|ref|YP_003542960.1| - 1e-05 25.6 7.1 1e-05 25.6 7.1 2.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294496467|ref|YP_003542960.1| - 1.8e-05 24.8 16.2 9.3e-05 22.5 8.5 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294496467|ref|YP_003542960.1| - 4.1e-05 23.4 2.0 4.1e-05 23.4 2.0 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|294496467|ref|YP_003542960.1| - 5.5e-05 24.0 15.9 0.043 14.7 6.2 2.8 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|294496467|ref|YP_003542960.1| - 0.00087 20.0 11.0 0.0044 17.7 0.9 2.9 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|294496467|ref|YP_003542960.1| - 0.01 16.4 11.8 0.21 12.2 0.7 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294496467|ref|YP_003542960.1| - 0.12 12.9 4.4 0.12 12.9 4.4 3.8 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|294496467|ref|YP_003542960.1| - 0.14 13.0 1.8 0.14 13.0 1.8 3.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|294496467|ref|YP_003542960.1| - 0.17 12.3 16.3 19 5.8 16.3 2.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain GXGXG PF01493.19 gi|294496468|ref|YP_003542961.1| - 2.2e-07 30.6 11.6 9.7e-06 25.3 4.0 2.9 2 2 1 3 3 3 3 GXGXG motif tRNA_anti-codon PF01336.25 gi|294496468|ref|YP_003542961.1| - 0.022 14.7 0.1 7.2 6.7 0.0 2.8 3 0 0 3 3 3 0 OB-fold nucleic acid binding domain FeoC PF09012.10 gi|294496469|ref|YP_003542962.1| - 5.2e-12 45.7 0.6 7.6e-12 45.1 0.6 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator Herpes_LMP2 PF07415.11 gi|294496470|ref|YP_003542963.1| - 0.0029 16.5 6.0 0.0034 16.3 6.0 1.1 1 0 0 1 1 1 1 Gammaherpesvirus latent membrane protein (LMP2) protein Pox_A14 PF05767.12 gi|294496470|ref|YP_003542963.1| - 0.22 11.7 4.2 0.23 11.6 2.2 2.1 3 0 0 3 3 3 0 Poxvirus virion envelope protein A14 DUF1700 PF08006.11 gi|294496470|ref|YP_003542963.1| - 0.69 9.4 8.5 1 8.8 8.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) DUF308 PF03729.13 gi|294496470|ref|YP_003542963.1| - 4 7.8 19.6 4.1 7.8 1.0 3.3 1 1 2 3 3 3 0 Short repeat of unknown function (DUF308) FeoB_N PF02421.18 gi|294496471|ref|YP_003542964.1| - 6e-65 217.5 0.8 8.9e-65 217.0 0.8 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|294496471|ref|YP_003542964.1| - 3.7e-45 152.8 17.0 2e-30 105.3 3.8 2.7 2 0 0 2 2 2 2 Nucleoside recognition FeoB_C PF07664.12 gi|294496471|ref|YP_003542964.1| - 8.9e-19 66.9 0.6 8.9e-19 66.9 0.6 3.5 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.23 gi|294496471|ref|YP_003542964.1| - 1.2e-18 67.2 0.2 2e-18 66.5 0.2 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|294496471|ref|YP_003542964.1| - 3.8e-13 49.8 0.0 8.3e-13 48.7 0.0 1.6 1 0 0 1 1 1 1 FeoB cytosolic helical domain SRPRB PF09439.10 gi|294496471|ref|YP_003542964.1| - 1.7e-05 24.3 0.0 2.6e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|294496471|ref|YP_003542964.1| - 0.028 14.5 0.1 8.3 6.4 0.0 2.3 1 1 1 2 2 2 0 Dynamin family AIG1 PF04548.16 gi|294496471|ref|YP_003542964.1| - 0.077 12.3 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 AIG1 family GTP_EFTU PF00009.27 gi|294496471|ref|YP_003542964.1| - 0.15 11.6 0.5 9.7 5.7 0.3 2.9 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain FeoA PF04023.14 gi|294496472|ref|YP_003542965.1| - 1.3e-15 57.4 0.0 1.5e-15 57.2 0.0 1.0 1 0 0 1 1 1 1 FeoA domain FeoA PF04023.14 gi|294496473|ref|YP_003542966.1| - 7.8e-16 58.1 0.1 8.6e-16 58.0 0.1 1.0 1 0 0 1 1 1 1 FeoA domain LEM PF03020.15 gi|294496473|ref|YP_003542966.1| - 0.031 13.8 0.0 0.058 13.0 0.0 1.4 1 0 0 1 1 1 0 LEM domain HIT PF01230.23 gi|294496474|ref|YP_003542967.1| - 3.6e-28 98.2 0.2 4.9e-28 97.7 0.2 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|294496474|ref|YP_003542967.1| - 2.1e-18 66.8 0.0 2.7e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|294496474|ref|YP_003542967.1| - 0.00022 21.1 0.0 0.00032 20.6 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Trypsin_2 PF13365.6 gi|294496475|ref|YP_003542968.1| - 2.9e-31 109.4 0.4 4.4e-31 108.8 0.4 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 gi|294496475|ref|YP_003542968.1| - 2.4e-18 66.2 0.1 6.1e-18 64.9 0.1 1.7 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.26 gi|294496475|ref|YP_003542968.1| - 4.5e-13 49.5 0.1 1.2e-12 48.1 0.1 1.6 1 1 0 1 1 1 1 Trypsin PDZ_6 PF17820.1 gi|294496475|ref|YP_003542968.1| - 0.00021 21.0 3.1 0.3 11.0 2.7 3.0 2 1 0 2 2 2 1 PDZ domain PDZ PF00595.24 gi|294496475|ref|YP_003542968.1| - 0.026 14.9 4.9 0.033 14.5 2.1 2.7 2 1 0 2 2 2 0 PDZ domain Peptidase_S46 PF10459.9 gi|294496475|ref|YP_003542968.1| - 0.35 9.4 0.7 1.3 7.6 0.5 1.7 2 0 0 2 2 2 0 Peptidase S46 FMN_red PF03358.15 gi|294496476|ref|YP_003542969.1| - 3.8e-30 104.7 0.0 5e-30 104.3 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|294496476|ref|YP_003542969.1| - 5.8e-09 35.9 0.0 7.2e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2284 PF10050.9 gi|294496476|ref|YP_003542969.1| - 0.017 14.9 0.1 0.027 14.2 0.1 1.3 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) HTH_5 PF01022.20 gi|294496477|ref|YP_003542970.1| - 4.1e-16 58.6 0.6 6.6e-16 57.9 0.6 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|294496477|ref|YP_003542970.1| - 3.3e-11 43.1 0.5 5e-11 42.5 0.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|294496477|ref|YP_003542970.1| - 9.8e-05 22.5 0.1 0.00017 21.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|294496477|ref|YP_003542970.1| - 0.0032 17.3 0.0 0.0051 16.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|294496477|ref|YP_003542970.1| - 0.0041 17.0 0.2 0.0072 16.2 0.2 1.5 1 0 0 1 1 1 1 MarR family Arg_repressor PF01316.21 gi|294496477|ref|YP_003542970.1| - 0.031 14.0 0.0 0.054 13.2 0.0 1.5 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain HTH_27 PF13463.6 gi|294496477|ref|YP_003542970.1| - 0.047 14.2 0.0 0.073 13.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Dimerisation2 PF16864.5 gi|294496477|ref|YP_003542970.1| - 0.079 12.9 0.1 0.099 12.6 0.1 1.1 1 0 0 1 1 1 0 Dimerisation domain ORC5_C PF14630.6 gi|294496477|ref|YP_003542970.1| - 0.09 12.3 0.1 0.1 12.1 0.1 1.1 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 5 C-terminus HTH_24 PF13412.6 gi|294496477|ref|YP_003542970.1| - 0.099 12.2 0.1 0.22 11.1 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding ArsP_1 PF03773.13 gi|294496478|ref|YP_003542971.1| - 1.4e-51 175.4 12.0 1.4e-51 175.4 12.0 1.5 2 0 0 2 2 2 1 Predicted permease FeoB_associated PF12669.7 gi|294496478|ref|YP_003542971.1| - 0.15 12.5 0.0 0.15 12.5 0.0 4.4 4 0 0 4 4 4 0 FeoB-associated Cys-rich membrane protein DUF418 PF04235.12 gi|294496478|ref|YP_003542971.1| - 0.7 9.8 9.8 1.3 9.0 8.5 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF418) Ribonuc_red_lgC PF02867.15 gi|294496479|ref|YP_003542972.1| - 9.1e-163 542.5 0.0 7.5e-161 536.2 0.0 2.1 1 1 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|294496479|ref|YP_003542972.1| - 5.6e-24 84.0 0.0 1.2e-23 82.9 0.0 1.6 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain POR_N PF01855.19 gi|294496480|ref|YP_003542973.1| - 0.0028 17.4 0.6 0.23 11.1 0.1 2.2 2 0 0 2 2 2 2 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg OstA PF03968.14 gi|294496480|ref|YP_003542973.1| - 0.0086 16.3 16.5 0.098 12.9 1.2 4.4 4 0 0 4 4 4 2 OstA-like protein Bactofilin PF04519.13 gi|294496480|ref|YP_003542973.1| - 0.029 14.6 42.5 0.21 11.9 1.8 7.5 3 2 3 8 8 8 0 Polymer-forming cytoskeletal BsuPI PF12690.7 gi|294496480|ref|YP_003542973.1| - 0.074 13.1 0.4 5.1 7.2 0.1 3.2 2 0 0 2 2 2 0 Intracellular proteinase inhibitor T2SSN PF01203.19 gi|294496480|ref|YP_003542973.1| - 0.12 12.6 6.4 22 5.2 0.3 4.4 3 2 1 5 5 5 0 Type II secretion system (T2SS), protein N UPF0051 PF01458.17 gi|294496480|ref|YP_003542973.1| - 2.3 7.8 15.8 0.57 9.8 1.7 3.7 3 1 1 4 4 4 0 Uncharacterized protein family (UPF0051) DUF61 PF01886.16 gi|294496481|ref|YP_003542974.1| - 9.8e-37 125.8 0.1 1.2e-36 125.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 DUF4895 PF16236.5 gi|294496481|ref|YP_003542974.1| - 0.091 12.5 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4895) MMR_HSR1_Xtn PF16897.5 gi|294496482|ref|YP_003542975.1| - 4.1e-33 113.6 1.3 8.8e-33 112.5 0.9 1.8 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|294496482|ref|YP_003542975.1| - 5.2e-21 74.9 0.0 1e-20 73.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|294496482|ref|YP_003542975.1| - 2.2e-20 72.5 0.0 4.8e-20 71.4 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|294496482|ref|YP_003542975.1| - 1.1e-12 47.7 0.0 2.7e-12 46.5 0.0 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|294496482|ref|YP_003542975.1| - 0.0012 18.8 2.3 0.079 12.9 0.1 3.3 3 1 1 4 4 4 1 RsgA GTPase Dynamin_N PF00350.23 gi|294496482|ref|YP_003542975.1| - 0.0024 17.9 0.3 0.19 11.7 0.0 2.6 3 0 0 3 3 3 1 Dynamin family MeaB PF03308.16 gi|294496482|ref|YP_003542975.1| - 0.0057 15.7 0.5 0.061 12.3 0.2 2.2 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|294496482|ref|YP_003542975.1| - 0.008 15.8 2.6 2.4 7.7 0.1 2.6 3 0 0 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain SRPRB PF09439.10 gi|294496482|ref|YP_003542975.1| - 0.019 14.4 0.0 0.034 13.6 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AIG1 PF04548.16 gi|294496482|ref|YP_003542975.1| - 0.025 13.9 0.0 0.05 12.9 0.0 1.5 1 0 0 1 1 1 0 AIG1 family ATP_bind_1 PF03029.17 gi|294496482|ref|YP_003542975.1| - 0.059 13.2 0.1 3.7 7.3 0.0 2.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MnmE_helical PF12631.7 gi|294496482|ref|YP_003542975.1| - 0.16 12.1 0.0 0.23 11.6 0.0 1.2 1 0 0 1 1 1 0 MnmE helical domain ABC_tran PF00005.27 gi|294496483|ref|YP_003542976.1| - 2.3e-30 105.9 0.0 4e-30 105.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|294496483|ref|YP_003542976.1| - 5.4e-10 39.6 1.2 3.1e-05 23.9 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|294496483|ref|YP_003542976.1| - 1.2e-09 38.2 0.1 4.3e-09 36.4 0.1 2.0 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.19 gi|294496483|ref|YP_003542976.1| - 4.1e-05 23.1 0.1 0.0029 17.1 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain TOBE PF03459.17 gi|294496483|ref|YP_003542976.1| - 0.0004 20.6 0.0 0.00074 19.8 0.0 1.5 1 0 0 1 1 1 1 TOBE domain AAA_23 PF13476.6 gi|294496483|ref|YP_003542976.1| - 0.00045 20.8 0.2 0.001 19.7 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|294496483|ref|YP_003542976.1| - 0.0059 16.9 0.4 0.024 14.9 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|294496483|ref|YP_003542976.1| - 0.016 15.7 0.0 0.094 13.1 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|294496483|ref|YP_003542976.1| - 0.02 15.3 0.1 0.033 14.6 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|294496483|ref|YP_003542976.1| - 0.033 13.9 0.0 0.063 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|294496483|ref|YP_003542976.1| - 0.091 13.0 0.3 0.81 10.0 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|294496483|ref|YP_003542976.1| - 0.12 12.2 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.6 gi|294496483|ref|YP_003542976.1| - 0.14 12.5 0.0 0.29 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain KdpD PF02702.17 gi|294496483|ref|YP_003542976.1| - 0.15 11.5 0.0 0.69 9.4 0.0 2.0 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain BPD_transp_1 PF00528.22 gi|294496484|ref|YP_003542977.1| - 8.9e-22 77.7 16.6 1.3e-21 77.2 16.6 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|294496485|ref|YP_003542978.1| - 1.5e-49 168.8 0.0 1.7e-49 168.6 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|294496485|ref|YP_003542978.1| - 2.8e-17 63.7 0.1 3.8e-08 33.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|294496485|ref|YP_003542978.1| - 9.9e-06 25.3 0.0 1.5e-05 24.7 0.0 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_8 PF13416.6 gi|294496485|ref|YP_003542978.1| - 0.0043 16.9 0.0 0.23 11.2 0.0 2.2 1 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|294496485|ref|YP_003542978.1| - 0.011 15.2 0.0 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|294496485|ref|YP_003542978.1| - 0.023 14.1 0.0 0.37 10.1 0.0 2.3 2 1 0 2 2 2 0 LysR substrate binding domain PBP_like_2 PF12849.7 gi|294496485|ref|YP_003542978.1| - 0.03 14.0 0.1 0.23 11.1 0.0 2.0 2 0 0 2 2 2 0 PBP superfamily domain NusG_add PF18298.1 gi|294496485|ref|YP_003542978.1| - 0.098 12.9 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 NusG additional domain MoeA_N PF03453.17 gi|294496486|ref|YP_003542979.1| - 7.7e-40 136.2 0.2 1.4e-39 135.3 0.2 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|294496486|ref|YP_003542979.1| - 6.3e-26 90.8 0.0 1.2e-25 89.8 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|294496486|ref|YP_003542979.1| - 2e-11 43.9 0.1 1.4e-10 41.1 0.0 2.5 4 0 0 4 4 4 1 MoeA C-terminal region (domain IV) Aminotran_4 PF01063.19 gi|294496487|ref|YP_003542980.1| - 1e-56 192.3 0.0 1.2e-56 192.1 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV Ig_J_chain PF15097.6 gi|294496487|ref|YP_003542980.1| - 0.024 14.5 0.0 0.04 13.8 0.0 1.3 1 0 0 1 1 1 0 Immunoglobulin J chain 4HBT PF03061.22 gi|294496488|ref|YP_003542981.1| - 3.2e-09 37.0 0.1 4.1e-09 36.7 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|294496488|ref|YP_003542981.1| - 2.7e-07 30.8 0.1 3.8e-07 30.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) Aminotran_5 PF00266.19 gi|294496488|ref|YP_003542981.1| - 0.012 14.7 0.0 0.013 14.4 0.0 1.1 1 0 0 1 1 1 0 Aminotransferase class-V PS-DH PF14765.6 gi|294496488|ref|YP_003542981.1| - 0.064 12.5 0.0 0.078 12.2 0.0 1.1 1 0 0 1 1 1 0 Polyketide synthase dehydratase ComJ PF11033.8 gi|294496488|ref|YP_003542981.1| - 0.13 12.0 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Competence protein J (ComJ) HAD_2 PF13419.6 gi|294496489|ref|YP_003542982.1| - 8.2e-30 104.2 0.0 9.5e-30 104.0 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|294496489|ref|YP_003542982.1| - 1.7e-12 48.1 0.1 6.8e-11 42.9 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|294496489|ref|YP_003542982.1| - 1.1e-05 25.4 0.0 1.6e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like XRN_M PF17846.1 gi|294496489|ref|YP_003542982.1| - 0.12 11.3 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 Xrn1 helical domain Response_reg PF00072.24 gi|294496490|ref|YP_003542983.1| - 1.6e-20 73.3 0.0 1.9e-20 73.1 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain iPGM_N PF06415.13 gi|294496491|ref|YP_003542984.1| - 2.2e-85 285.5 0.2 3.1e-85 285.0 0.2 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|294496491|ref|YP_003542984.1| - 6.9e-82 274.5 0.1 7.9e-82 274.3 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|294496491|ref|YP_003542984.1| - 0.00019 21.1 0.0 0.0003 20.5 0.0 1.4 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|294496491|ref|YP_003542984.1| - 0.095 12.1 0.0 0.17 11.3 0.0 1.5 2 0 0 2 2 2 0 Sulfatase XPG_I PF00867.18 gi|294496492|ref|YP_003542985.1| - 9.1e-26 90.0 0.1 2.7e-25 88.5 0.0 1.8 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.17 gi|294496492|ref|YP_003542985.1| - 1.8e-20 73.3 0.0 3.9e-20 72.2 0.0 1.6 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|294496492|ref|YP_003542985.1| - 3.1e-06 27.7 0.2 7.8e-06 26.4 0.0 1.8 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|294496492|ref|YP_003542985.1| - 0.0087 16.6 0.0 0.023 15.3 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|294496492|ref|YP_003542985.1| - 0.0092 16.1 0.0 0.023 14.8 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif 5_3_exonuc_N PF02739.16 gi|294496492|ref|YP_003542985.1| - 0.05 13.5 0.0 0.098 12.6 0.0 1.5 1 1 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain Oxidored_q2 PF00420.24 gi|294496494|ref|YP_003542987.1| - 0.0015 18.1 0.5 0.002 17.7 0.5 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LapA_dom PF06305.11 gi|294496494|ref|YP_003542987.1| - 0.036 13.9 0.9 0.036 13.9 0.9 1.7 1 1 1 2 2 2 0 Lipopolysaccharide assembly protein A domain Baculo_PEP_C PF04513.12 gi|294496494|ref|YP_003542987.1| - 0.056 13.5 0.7 0.072 13.1 0.7 1.1 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4175 PF13779.6 gi|294496494|ref|YP_003542987.1| - 0.067 11.1 0.1 0.076 10.9 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) SPP PF06550.11 gi|294496495|ref|YP_003542988.1| - 1.7e-95 319.8 23.8 2e-95 319.5 23.8 1.0 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease EAV_GS PF01309.18 gi|294496495|ref|YP_003542988.1| - 0.85 9.2 3.5 4.2 7.0 0.7 2.2 1 1 1 2 2 2 0 Equine arteritis virus small envelope glycoprotein CMD PF02627.20 gi|294496496|ref|YP_003542989.1| - 9.2e-14 51.3 0.1 1.3e-13 50.8 0.1 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF3755 PF12579.8 gi|294496496|ref|YP_003542989.1| - 0.066 12.9 1.0 1.1 8.9 1.0 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3755) MCR_C PF04609.12 gi|294496497|ref|YP_003542990.1| - 7.2e-124 412.2 0.1 8.6e-124 412.0 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF4899 PF16240.5 gi|294496497|ref|YP_003542990.1| - 0.11 11.7 0.0 0.95 8.6 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4899) DUF2113 PF09886.9 gi|294496498|ref|YP_003542991.1| - 3.7e-65 218.7 0.1 4.2e-65 218.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) BcrAD_BadFG PF01869.20 gi|294496499|ref|YP_003542992.1| - 4.2e-58 197.0 4.8 6e-58 196.4 4.8 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|294496499|ref|YP_003542992.1| - 0.0017 18.8 0.2 0.027 14.9 0.2 2.4 1 1 0 1 1 1 1 Cell division protein FtsA Peptidase_M22 PF00814.25 gi|294496499|ref|YP_003542992.1| - 0.01 15.6 0.1 3.4 7.3 0.0 2.7 3 0 0 3 3 3 0 Glycoprotease family Hydant_A_N PF05378.13 gi|294496499|ref|YP_003542992.1| - 0.044 13.5 2.3 0.11 12.2 0.3 2.3 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase N-terminal region FGGY_N PF00370.21 gi|294496499|ref|YP_003542992.1| - 0.071 12.7 0.3 5.6 6.5 0.0 2.4 1 1 1 2 2 2 0 FGGY family of carbohydrate kinases, N-terminal domain DUF2112 PF09885.9 gi|294496500|ref|YP_003542993.1| - 5.2e-65 217.8 0.0 5.9e-65 217.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.9 gi|294496501|ref|YP_003542994.1| - 3.1e-44 148.9 0.0 4.2e-44 148.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) ABC_tran PF00005.27 gi|294496503|ref|YP_003542996.1| - 4.4e-49 166.5 0.0 5.2e-24 85.3 0.0 2.4 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|294496503|ref|YP_003542996.1| - 1.9e-07 30.7 0.2 0.0021 17.6 0.2 3.1 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_18 PF13238.6 gi|294496503|ref|YP_003542996.1| - 1.1e-05 26.0 0.3 0.33 11.5 0.0 3.2 3 0 0 3 3 3 2 AAA domain RsgA_GTPase PF03193.16 gi|294496503|ref|YP_003542996.1| - 2.2e-05 24.4 1.1 0.11 12.3 0.1 2.6 2 0 0 2 2 2 2 RsgA GTPase PRK PF00485.18 gi|294496503|ref|YP_003542996.1| - 0.00049 19.9 0.2 0.82 9.4 0.0 2.4 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_29 PF13555.6 gi|294496503|ref|YP_003542996.1| - 0.00061 19.5 2.3 0.17 11.6 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|294496503|ref|YP_003542996.1| - 0.00072 18.9 0.3 0.018 14.3 0.1 2.3 2 0 0 2 2 2 1 Zeta toxin AAA_16 PF13191.6 gi|294496503|ref|YP_003542996.1| - 0.00096 19.6 0.0 0.2 12.0 0.0 2.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 gi|294496503|ref|YP_003542996.1| - 0.0011 18.8 2.3 0.89 9.3 0.0 3.0 4 0 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system MobB PF03205.14 gi|294496503|ref|YP_003542996.1| - 0.0016 18.3 0.1 0.87 9.5 0.0 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ATP-synt_ab PF00006.25 gi|294496503|ref|YP_003542996.1| - 0.0022 17.7 0.1 0.55 9.8 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_28 PF13521.6 gi|294496503|ref|YP_003542996.1| - 0.0045 17.2 1.6 4.1 7.6 0.0 3.9 4 1 1 5 5 5 1 AAA domain AAA_22 PF13401.6 gi|294496503|ref|YP_003542996.1| - 0.0063 16.8 3.1 1.4 9.2 0.0 3.0 3 1 0 3 3 2 1 AAA domain AAA_30 PF13604.6 gi|294496503|ref|YP_003542996.1| - 0.0076 16.0 0.8 0.52 10.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|294496503|ref|YP_003542996.1| - 0.0094 15.3 0.2 1.2 8.5 0.0 2.8 3 0 0 3 3 3 1 KaiC NB-ARC PF00931.22 gi|294496503|ref|YP_003542996.1| - 0.015 14.5 0.8 0.37 10.0 0.1 2.4 2 0 0 2 2 2 0 NB-ARC domain AAA_33 PF13671.6 gi|294496503|ref|YP_003542996.1| - 0.017 15.3 4.3 0.56 10.4 0.2 2.7 2 2 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|294496503|ref|YP_003542996.1| - 0.019 13.9 1.7 0.35 9.7 0.2 2.3 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain IstB_IS21 PF01695.17 gi|294496503|ref|YP_003542996.1| - 0.025 14.3 3.0 8.7 6.0 0.1 3.3 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_23 PF13476.6 gi|294496503|ref|YP_003542996.1| - 0.036 14.6 3.8 0.33 11.4 0.3 2.3 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|294496503|ref|YP_003542996.1| - 0.052 13.5 0.7 13 5.8 0.1 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PduV-EutP PF10662.9 gi|294496503|ref|YP_003542996.1| - 0.069 12.9 0.3 1.9 8.3 0.0 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_17 PF13207.6 gi|294496503|ref|YP_003542996.1| - 0.073 13.5 0.1 0.74 10.2 0.0 2.5 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|294496503|ref|YP_003542996.1| - 0.092 13.1 0.1 17 5.9 0.0 2.5 2 0 0 2 2 2 0 RNA helicase AAA_24 PF13479.6 gi|294496503|ref|YP_003542996.1| - 0.096 12.4 1.1 13 5.5 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|294496503|ref|YP_003542996.1| - 0.13 11.8 0.9 5.1 6.6 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region DUF87 PF01935.17 gi|294496503|ref|YP_003542996.1| - 0.14 12.2 3.2 3 7.9 0.1 3.2 3 0 0 3 3 3 0 Helicase HerA, central domain MMR_HSR1 PF01926.23 gi|294496503|ref|YP_003542996.1| - 0.14 12.2 2.7 5.5 7.1 0.0 3.3 4 0 0 4 4 4 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|294496503|ref|YP_003542996.1| - 0.2 11.6 1.9 0.58 10.1 0.1 2.3 2 0 0 2 2 2 0 NACHT domain PhoH PF02562.16 gi|294496503|ref|YP_003542996.1| - 0.25 10.7 2.4 0.99 8.8 0.0 2.7 2 1 0 2 2 2 0 PhoH-like protein AAA PF00004.29 gi|294496503|ref|YP_003542996.1| - 0.33 11.4 4.1 36 4.8 1.8 3.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|294496503|ref|YP_003542996.1| - 0.33 11.0 3.0 7.4 6.6 0.6 2.7 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|294496503|ref|YP_003542996.1| - 9.4 5.8 7.8 17 5.0 0.1 3.5 4 0 0 4 4 4 0 CobW/HypB/UreG, nucleotide-binding domain Hydrolase PF00702.26 gi|294496504|ref|YP_003542997.1| - 1.2e-17 65.0 0.0 4.9e-17 62.9 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|294496504|ref|YP_003542997.1| - 2.9e-06 27.2 0.0 0.036 13.8 0.1 3.0 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|294496504|ref|YP_003542997.1| - 0.0011 19.1 0.0 0.0078 16.3 0.0 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|294496504|ref|YP_003542997.1| - 0.0048 16.9 0.1 0.011 15.8 0.1 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|294496504|ref|YP_003542997.1| - 0.025 15.0 0.0 0.11 12.9 0.0 1.9 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.14 gi|294496504|ref|YP_003542997.1| - 0.2 11.2 0.2 0.51 9.9 0.2 1.6 1 1 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) SNase PF00565.17 gi|294496505|ref|YP_003542998.1| - 3.8e-22 78.8 0.0 5.6e-22 78.3 0.0 1.3 1 0 0 1 1 1 1 Staphylococcal nuclease homologue tRNA_anti-codon PF01336.25 gi|294496505|ref|YP_003542998.1| - 0.0032 17.4 0.0 0.0068 16.4 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF3592 PF12158.8 gi|294496505|ref|YP_003542998.1| - 0.13 12.3 0.6 5.3 7.1 0.1 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF3592) DUF2064 PF09837.9 gi|294496505|ref|YP_003542998.1| - 0.17 11.7 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) Peptidase_M10 PF00413.24 gi|294496506|ref|YP_003542999.1| - 1.6e-15 57.3 0.0 2.3e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.9 gi|294496506|ref|YP_003542999.1| - 0.0003 19.8 0.2 0.0004 19.4 0.2 1.2 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_3 PF13582.6 gi|294496506|ref|YP_003542999.1| - 0.0027 18.2 0.0 0.0036 17.8 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like DUF4953 PF16313.5 gi|294496506|ref|YP_003542999.1| - 0.0032 16.7 0.0 0.0048 16.2 0.0 1.2 1 0 0 1 1 1 1 Met-zincin Metallopep PF12044.8 gi|294496506|ref|YP_003542999.1| - 0.0096 14.6 0.0 0.014 14.0 0.0 1.2 1 0 0 1 1 1 1 Putative peptidase family Astacin PF01400.24 gi|294496506|ref|YP_003542999.1| - 0.012 15.2 0.1 0.024 14.2 0.0 1.5 2 0 0 2 2 2 0 Astacin (Peptidase family M12A) Peptidase_M54 PF07998.11 gi|294496506|ref|YP_003542999.1| - 0.044 13.8 0.0 0.073 13.1 0.0 1.4 1 0 0 1 1 1 0 Peptidase family M54 Reprolysin_5 PF13688.6 gi|294496506|ref|YP_003542999.1| - 0.076 13.2 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Reprolysin_4 PF13583.6 gi|294496506|ref|YP_003542999.1| - 0.15 11.6 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like TM_helix PF05552.12 gi|294496506|ref|YP_003542999.1| - 9 6.4 7.4 7.2 6.7 0.7 2.3 2 0 0 2 2 2 0 Conserved TM helix DNA_binding_1 PF01035.20 gi|294496507|ref|YP_003543000.1| - 1.6e-30 105.0 0.1 2e-30 104.8 0.1 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain eIF-5a PF01287.20 gi|294496508|ref|YP_003543001.1| - 3.8e-08 33.3 0.5 3.8e-08 33.3 0.5 1.6 2 0 0 2 2 2 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|294496508|ref|YP_003543001.1| - 0.001 19.0 0.1 0.0016 18.4 0.1 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain DUF1947 PF09183.10 gi|294496508|ref|YP_003543001.1| - 0.0053 17.0 1.0 0.095 13.0 0.2 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF1947) Arginase PF00491.21 gi|294496509|ref|YP_003543002.1| - 9.8e-77 258.2 0.0 1.1e-76 258.0 0.0 1.0 1 0 0 1 1 1 1 Arginase family Elf1 PF05129.13 gi|294496510|ref|YP_003543003.1| - 0.0031 17.5 0.2 0.0061 16.6 0.2 1.4 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like PCMT PF01135.19 gi|294496511|ref|YP_003543004.1| - 2.1e-70 236.7 0.1 2.6e-70 236.4 0.1 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|294496511|ref|YP_003543004.1| - 8e-10 38.7 0.0 1.1e-09 38.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|294496511|ref|YP_003543004.1| - 5.9e-06 25.5 0.1 8e-06 25.1 0.1 1.2 1 0 0 1 1 1 1 Fibrillarin GCD14 PF08704.10 gi|294496511|ref|YP_003543004.1| - 0.00049 19.9 0.0 0.00072 19.3 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.20 gi|294496511|ref|YP_003543004.1| - 0.00065 18.9 0.0 0.00098 18.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.17 gi|294496511|ref|YP_003543004.1| - 0.0029 16.8 0.1 0.0044 16.2 0.1 1.3 1 0 0 1 1 1 1 O-methyltransferase CMAS PF02353.20 gi|294496511|ref|YP_003543004.1| - 0.0041 16.5 0.0 0.0058 16.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.6 gi|294496511|ref|YP_003543004.1| - 0.0048 17.6 0.0 0.0072 17.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|294496511|ref|YP_003543004.1| - 0.01 15.2 0.0 0.015 14.7 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltr_RsmB-F PF01189.17 gi|294496511|ref|YP_003543004.1| - 0.012 15.2 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_23 PF13489.6 gi|294496511|ref|YP_003543004.1| - 0.016 15.0 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|294496511|ref|YP_003543004.1| - 0.18 12.5 0.0 0.29 11.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|294496511|ref|YP_003543004.1| - 0.22 11.5 0.0 0.3 11.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PhoU PF01895.19 gi|294496512|ref|YP_003543005.1| - 2.8e-23 82.2 6.1 1.9e-17 63.5 1.1 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|294496512|ref|YP_003543005.1| - 1.8e-07 30.9 0.0 3.4e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin HsbA PF12296.8 gi|294496512|ref|YP_003543005.1| - 0.19 12.2 1.9 1.5 9.2 2.2 2.3 2 0 0 2 2 2 0 Hydrophobic surface binding protein A GTP_EFTU PF00009.27 gi|294496513|ref|YP_003543006.1| - 4.1e-16 59.1 0.1 1e-06 28.5 0.1 2.9 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|294496513|ref|YP_003543006.1| - 8.8e-16 58.0 0.0 1.2e-15 57.6 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|294496513|ref|YP_003543006.1| - 2.2e-06 27.7 0.1 0.044 13.7 0.0 2.1 2 0 0 2 2 2 2 RsgA GTPase Arf PF00025.21 gi|294496513|ref|YP_003543006.1| - 5.3e-06 26.0 0.0 0.065 12.7 0.0 2.3 2 0 0 2 2 2 2 ADP-ribosylation factor family FeoB_N PF02421.18 gi|294496513|ref|YP_003543006.1| - 1.5e-05 24.6 0.1 8.9e-05 22.1 0.1 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B Roc PF08477.13 gi|294496513|ref|YP_003543006.1| - 0.00012 22.2 0.0 0.0059 16.8 0.0 2.2 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase SRPRB PF09439.10 gi|294496513|ref|YP_003543006.1| - 0.00012 21.5 0.0 0.021 14.2 0.0 2.4 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit Septin PF00735.18 gi|294496513|ref|YP_003543006.1| - 0.00022 20.6 0.0 0.00032 20.1 0.0 1.2 1 0 0 1 1 1 1 Septin AAA_24 PF13479.6 gi|294496513|ref|YP_003543006.1| - 0.00068 19.4 0.1 0.0026 17.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|294496513|ref|YP_003543006.1| - 0.0007 20.0 0.0 0.0012 19.3 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1_Xtn PF16897.5 gi|294496513|ref|YP_003543006.1| - 0.0012 18.8 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain NB-ARC PF00931.22 gi|294496513|ref|YP_003543006.1| - 0.0071 15.6 0.0 0.016 14.4 0.0 1.6 1 0 0 1 1 1 1 NB-ARC domain AAA PF00004.29 gi|294496513|ref|YP_003543006.1| - 0.0084 16.5 0.1 0.021 15.2 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|294496513|ref|YP_003543006.1| - 0.0091 15.9 0.1 0.019 14.9 0.1 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea ABC_tran PF00005.27 gi|294496513|ref|YP_003543006.1| - 0.013 16.0 0.1 0.021 15.3 0.0 1.4 1 1 0 1 1 1 0 ABC transporter Dynamin_N PF00350.23 gi|294496513|ref|YP_003543006.1| - 0.014 15.5 0.0 2.3 8.2 0.0 2.3 1 1 0 2 2 2 0 Dynamin family AAA_18 PF13238.6 gi|294496513|ref|YP_003543006.1| - 0.028 14.9 0.0 0.067 13.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|294496513|ref|YP_003543006.1| - 0.043 13.7 0.0 0.094 12.6 0.0 1.6 1 0 0 1 1 1 0 NTPase RNA_helicase PF00910.22 gi|294496513|ref|YP_003543006.1| - 0.044 14.2 0.0 0.069 13.5 0.0 1.4 1 0 0 1 1 1 0 RNA helicase TniB PF05621.11 gi|294496513|ref|YP_003543006.1| - 0.061 12.7 0.1 0.67 9.3 0.0 2.5 2 1 0 2 2 2 0 Bacterial TniB protein NACHT PF05729.12 gi|294496513|ref|YP_003543006.1| - 0.062 13.2 0.0 0.21 11.5 0.0 2.0 1 1 0 1 1 1 0 NACHT domain MeaB PF03308.16 gi|294496513|ref|YP_003543006.1| - 0.071 12.1 0.1 1.3 7.9 0.0 2.4 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AIG1 PF04548.16 gi|294496513|ref|YP_003543006.1| - 0.083 12.2 0.0 0.12 11.6 0.0 1.5 1 1 0 1 1 1 0 AIG1 family cobW PF02492.19 gi|294496513|ref|YP_003543006.1| - 0.13 11.8 0.0 0.72 9.4 0.0 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Parvo_NS1 PF01057.17 gi|294496513|ref|YP_003543006.1| - 0.13 11.3 0.0 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_28 PF13521.6 gi|294496513|ref|YP_003543006.1| - 0.14 12.4 0.1 0.36 11.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain PPV_E1_C PF00519.17 gi|294496513|ref|YP_003543006.1| - 0.25 10.1 0.0 0.37 9.6 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase DUF2073 PF09846.9 gi|294496514|ref|YP_003543007.1| - 2.3e-45 152.8 0.1 2.6e-45 152.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) SIS PF01380.22 gi|294496516|ref|YP_003543009.1| - 1.3e-17 63.9 0.1 2.8e-17 62.8 0.1 1.5 2 0 0 2 2 2 1 SIS domain SIS_2 PF13580.6 gi|294496516|ref|YP_003543009.1| - 0.00039 20.5 2.0 0.005 16.9 0.3 2.2 1 1 1 2 2 2 1 SIS domain Y1_Tnp PF01797.16 gi|294496516|ref|YP_003543009.1| - 0.03 14.4 0.0 0.05 13.7 0.0 1.4 1 0 0 1 1 1 0 Transposase IS200 like Aminotran_1_2 PF00155.21 gi|294496517|ref|YP_003543010.1| - 5.2e-66 223.3 0.0 5.8e-66 223.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|294496517|ref|YP_003543010.1| - 4e-08 33.0 0.0 7.9e-08 32.0 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|294496517|ref|YP_003543010.1| - 3.5e-07 29.5 0.0 7.3e-07 28.5 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|294496517|ref|YP_003543010.1| - 6.4e-06 24.9 0.1 8.2e-06 24.6 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme NOG1_N PF17835.1 gi|294496518|ref|YP_003543011.1| - 9.3e-50 168.7 0.2 1.5e-49 168.0 0.2 1.3 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|294496518|ref|YP_003543011.1| - 1.1e-22 79.6 0.1 2.1e-22 78.6 0.1 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|294496518|ref|YP_003543011.1| - 3.9e-18 65.6 0.0 7.3e-18 64.7 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|294496518|ref|YP_003543011.1| - 5.1e-13 48.8 0.0 7.8e-13 48.2 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B DUF2277 PF10041.9 gi|294496518|ref|YP_003543011.1| - 0.0043 17.3 0.0 0.011 16.0 0.0 1.7 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2277) RsgA_GTPase PF03193.16 gi|294496518|ref|YP_003543011.1| - 0.0069 16.3 0.0 0.12 12.3 0.0 2.5 2 1 0 2 2 2 1 RsgA GTPase ATP_bind_1 PF03029.17 gi|294496518|ref|YP_003543011.1| - 0.032 14.0 0.0 5.9 6.6 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AIG1 PF04548.16 gi|294496518|ref|YP_003543011.1| - 0.08 12.2 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 AIG1 family Dynamin_N PF00350.23 gi|294496518|ref|YP_003543011.1| - 0.12 12.4 0.2 21 5.1 0.1 2.4 1 1 1 2 2 2 0 Dynamin family AAA_16 PF13191.6 gi|294496518|ref|YP_003543011.1| - 0.15 12.5 0.0 0.76 10.1 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain HrcA_DNA-bdg PF03444.15 gi|294496519|ref|YP_003543012.1| - 2.2e-35 120.2 0.1 5.6e-35 118.8 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|294496519|ref|YP_003543012.1| - 2.9e-25 88.5 0.4 1.8e-11 44.3 0.1 2.5 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.20 gi|294496519|ref|YP_003543012.1| - 3.4e-08 33.7 0.0 6.9e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|294496519|ref|YP_003543012.1| - 2e-07 30.8 0.0 3.9e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|294496519|ref|YP_003543012.1| - 0.036 14.0 0.0 0.08 12.8 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|294496519|ref|YP_003543012.1| - 0.044 13.4 0.0 0.97 9.2 0.0 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_IclR PF09339.10 gi|294496519|ref|YP_003543012.1| - 0.086 12.7 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|294496519|ref|YP_003543012.1| - 0.13 12.3 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PRA-PH PF01503.17 gi|294496520|ref|YP_003543013.1| - 1.2e-15 57.7 0.0 1.3e-15 57.5 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|294496520|ref|YP_003543013.1| - 0.0008 19.5 1.1 0.00085 19.5 0.2 1.5 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain CBS PF00571.28 gi|294496521|ref|YP_003543014.1| - 6.7e-26 90.5 1.7 6.1e-12 45.8 0.3 2.0 2 0 0 2 2 2 2 CBS domain Ribosomal_L9_C PF03948.14 gi|294496521|ref|YP_003543014.1| - 0.0035 17.8 0.1 0.0079 16.6 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein L9, C-terminal domain IF3_N PF05198.16 gi|294496521|ref|YP_003543014.1| - 0.02 15.2 0.1 2 8.7 0.0 2.3 1 1 1 2 2 2 0 Translation initiation factor IF-3, N-terminal domain Aconitase PF00330.20 gi|294496522|ref|YP_003543015.1| - 4.7e-92 309.4 0.3 5.1e-90 302.7 0.3 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|294496522|ref|YP_003543015.1| - 0.0091 14.7 0.0 0.014 14.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) CxxCxxCC PF03692.15 gi|294496523|ref|YP_003543016.1| - 6.4e-13 49.2 0.0 1.6e-12 47.9 0.0 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain TrkA_N PF02254.18 gi|294496524|ref|YP_003543017.1| - 7.9e-18 64.8 0.0 2.2e-17 63.4 0.0 1.8 1 0 0 1 1 1 1 TrkA-N domain DHHA1 PF02272.19 gi|294496524|ref|YP_003543017.1| - 9.4e-15 55.2 0.4 2.7e-13 50.5 0.1 2.7 3 0 0 3 3 3 1 DHHA1 domain DHH PF01368.20 gi|294496524|ref|YP_003543017.1| - 3.3e-14 52.9 0.6 6e-14 52.1 0.3 1.6 2 0 0 2 2 2 1 DHH family Pox_VLTF3 PF04947.14 gi|294496524|ref|YP_003543017.1| - 0.13 12.0 0.0 1.7 8.4 0.0 2.5 3 0 0 3 3 3 0 Poxvirus Late Transcription Factor VLTF3 like Carb_kinase PF01256.17 gi|294496525|ref|YP_003543018.1| - 6.2e-57 192.9 0.6 9.7e-57 192.2 0.6 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|294496525|ref|YP_003543018.1| - 3.4e-43 147.5 1.3 1.1e-41 142.6 0.3 2.3 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|294496525|ref|YP_003543018.1| - 9.1e-05 21.9 0.9 0.0002 20.9 0.1 1.9 2 0 0 2 2 2 1 Hydroxyethylthiazole kinase family TP_methylase PF00590.20 gi|294496525|ref|YP_003543018.1| - 0.034 14.1 0.0 0.089 12.7 0.0 1.7 1 0 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases MoaC PF01967.21 gi|294496527|ref|YP_003543020.1| - 1.5e-49 167.6 3.1 1.7e-49 167.4 3.1 1.0 1 0 0 1 1 1 1 MoaC family Pribosyltran_N PF13793.6 gi|294496528|ref|YP_003543021.1| - 2.6e-26 91.8 0.0 9.8e-24 83.5 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|294496528|ref|YP_003543021.1| - 7e-18 64.6 0.1 1.3e-17 63.7 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|294496528|ref|YP_003543021.1| - 2.5e-09 37.5 1.5 3.1e-09 37.2 0.2 1.7 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|294496528|ref|YP_003543021.1| - 1.1e-06 28.3 0.0 1.7e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|294496528|ref|YP_003543021.1| - 0.0082 15.7 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase RRM_3 PF08777.11 gi|294496529|ref|YP_003543022.1| - 0.046 13.8 1.8 0.13 12.3 0.2 2.0 1 1 1 2 2 2 0 RNA binding motif Herpes_UL32 PF06070.11 gi|294496529|ref|YP_003543022.1| - 0.1 10.3 1.5 0.11 10.2 1.5 1.0 1 0 0 1 1 1 0 Herpesvirus large structural phosphoprotein UL32 HK97-gp10_like PF04883.12 gi|294496529|ref|YP_003543022.1| - 0.19 12.8 1.5 0.3 12.1 1.5 1.5 1 1 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component HhH-GPD PF00730.25 gi|294496530|ref|YP_003543023.1| - 1.8e-16 60.5 0.0 2.4e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|294496530|ref|YP_003543023.1| - 0.00019 21.1 0.0 0.00043 20.0 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|294496530|ref|YP_003543023.1| - 0.034 14.8 0.0 0.09 13.4 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain TPD PF14811.6 gi|294496531|ref|YP_003543024.1| - 4.3e-48 162.7 0.2 5.8e-48 162.2 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function TPD sequence-motif CDC24_OB2 PF17245.2 gi|294496531|ref|YP_003543024.1| - 0.11 13.1 0.1 0.2 12.2 0.1 1.4 1 0 0 1 1 1 0 Cell division control protein 24, OB domain 2 FeoB_N PF02421.18 gi|294496533|ref|YP_003543026.1| - 2.3e-59 199.4 0.2 3.8e-59 198.7 0.2 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|294496533|ref|YP_003543026.1| - 4.5e-26 91.3 18.0 4.1e-13 49.6 7.8 2.7 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|294496533|ref|YP_003543026.1| - 1.7e-19 69.9 0.1 4.2e-19 68.7 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|294496533|ref|YP_003543026.1| - 1e-14 53.9 0.3 1e-14 53.9 0.3 3.3 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus AIG1 PF04548.16 gi|294496533|ref|YP_003543026.1| - 0.00015 21.2 0.1 0.00024 20.5 0.1 1.2 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.23 gi|294496533|ref|YP_003543026.1| - 0.0003 20.9 1.6 0.073 13.1 0.0 2.4 1 1 1 2 2 2 2 Dynamin family ATP_bind_1 PF03029.17 gi|294496533|ref|YP_003543026.1| - 0.029 14.2 0.1 0.092 12.5 0.0 1.8 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein SRPRB PF09439.10 gi|294496533|ref|YP_003543026.1| - 0.034 13.6 0.0 0.059 12.8 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit FeoB_Cyto PF17910.1 gi|294496533|ref|YP_003543026.1| - 0.064 13.8 0.0 0.13 12.8 0.0 1.5 1 0 0 1 1 1 0 FeoB cytosolic helical domain Fe_dep_repress PF01325.19 gi|294496534|ref|YP_003543027.1| - 2.2e-20 72.6 0.1 1.8e-19 69.7 0.0 2.4 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|294496534|ref|YP_003543027.1| - 2.8e-16 59.4 0.1 7.6e-16 58.0 0.1 1.8 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain FeoA PF04023.14 gi|294496534|ref|YP_003543027.1| - 2.1e-11 43.9 0.3 8e-11 42.0 0.2 2.0 3 0 0 3 3 2 1 FeoA domain HTH_24 PF13412.6 gi|294496534|ref|YP_003543027.1| - 3.3e-06 26.5 0.0 9.4e-06 25.1 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|294496534|ref|YP_003543027.1| - 7e-06 25.9 0.0 2.8e-05 23.9 0.0 2.1 1 1 1 2 2 2 1 MarR family MarR_2 PF12802.7 gi|294496534|ref|YP_003543027.1| - 9.6e-06 25.4 0.0 4.3e-05 23.3 0.0 2.1 1 1 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|294496534|ref|YP_003543027.1| - 2e-05 24.4 0.2 0.00021 21.2 0.0 2.7 3 1 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|294496534|ref|YP_003543027.1| - 2.2e-05 24.1 0.0 5.5e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|294496534|ref|YP_003543027.1| - 0.00029 21.1 0.2 0.11 12.9 0.0 3.4 3 1 0 3 3 3 1 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|294496534|ref|YP_003543027.1| - 0.00056 19.6 0.0 0.0021 17.8 0.0 1.9 2 0 0 2 2 2 1 LexA DNA binding domain TrmB PF01978.19 gi|294496534|ref|YP_003543027.1| - 0.00081 19.2 0.0 0.0044 16.9 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HrcA_DNA-bdg PF03444.15 gi|294496534|ref|YP_003543027.1| - 0.0017 17.9 0.0 0.0075 15.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_27 PF13463.6 gi|294496534|ref|YP_003543027.1| - 0.0063 17.0 0.1 0.035 14.6 0.1 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|294496534|ref|YP_003543027.1| - 0.007 16.2 0.2 0.029 14.2 0.0 2.1 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|294496534|ref|YP_003543027.1| - 0.01 15.5 0.0 0.028 14.0 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family GerE PF00196.19 gi|294496534|ref|YP_003543027.1| - 0.033 13.7 0.0 0.11 12.1 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_AsnC-type PF13404.6 gi|294496534|ref|YP_003543027.1| - 0.049 13.5 0.0 0.099 12.5 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_45 PF14947.6 gi|294496534|ref|YP_003543027.1| - 0.083 12.9 0.0 0.61 10.1 0.0 2.4 2 1 0 2 2 2 0 Winged helix-turn-helix RP-C PF03428.13 gi|294496534|ref|YP_003543027.1| - 0.086 12.5 0.0 0.39 10.4 0.0 1.9 2 0 0 2 2 2 0 Replication protein C N-terminal domain DUF2250 PF10007.9 gi|294496534|ref|YP_003543027.1| - 0.092 12.9 0.1 0.22 11.6 0.1 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DS PF01916.17 gi|294496535|ref|YP_003543028.1| - 5.9e-97 324.4 0.7 6.8e-97 324.2 0.7 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Orn_Arg_deC_N PF02784.16 gi|294496536|ref|YP_003543029.1| - 1.1e-09 38.0 0.0 2e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|294496536|ref|YP_003543029.1| - 1.7e-05 24.9 0.0 2e-05 24.8 0.0 1.3 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PvlArgDC PF01862.16 gi|294496537|ref|YP_003543030.1| - 5.9e-60 201.7 0.0 6.7e-60 201.6 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) tRNA-synt_1f PF01921.18 gi|294496538|ref|YP_003543031.1| - 1.1e-128 429.2 0.0 1.4e-128 428.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|294496538|ref|YP_003543031.1| - 1.4e-07 30.6 0.0 0.00031 19.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|294496538|ref|YP_003543031.1| - 1.1e-05 24.9 0.0 0.17 11.2 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Transpos_assoc PF13963.6 gi|294496538|ref|YP_003543031.1| - 0.063 13.6 0.0 0.21 11.9 0.0 1.9 1 0 0 1 1 1 0 Transposase-associated domain Methyltransf_11 PF08241.12 gi|294496539|ref|YP_003543032.1| - 4.9e-20 72.0 0.0 8e-20 71.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|294496539|ref|YP_003543032.1| - 9.5e-19 67.9 0.0 1.5e-18 67.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|294496539|ref|YP_003543032.1| - 2.3e-12 47.5 0.0 4.1e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|294496539|ref|YP_003543032.1| - 3.1e-12 46.6 0.0 4.2e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|294496539|ref|YP_003543032.1| - 2.5e-10 40.4 0.1 5e-10 39.4 0.0 1.5 1 1 1 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|294496539|ref|YP_003543032.1| - 5.2e-06 26.0 0.0 8.1e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_9 PF08003.11 gi|294496539|ref|YP_003543032.1| - 0.00017 20.6 0.0 0.00036 19.6 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) CheR PF01739.18 gi|294496539|ref|YP_003543032.1| - 0.00024 20.6 0.0 0.0023 17.5 0.0 2.1 2 0 0 2 2 2 1 CheR methyltransferase, SAM binding domain CMAS PF02353.20 gi|294496539|ref|YP_003543032.1| - 0.00063 19.1 0.0 0.0012 18.2 0.0 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|294496539|ref|YP_003543032.1| - 0.00073 19.2 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW NodS PF05401.11 gi|294496539|ref|YP_003543032.1| - 0.0027 17.3 0.0 0.0038 16.9 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_29 PF03141.16 gi|294496539|ref|YP_003543032.1| - 0.021 13.4 0.0 0.024 13.2 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|294496539|ref|YP_003543032.1| - 0.022 14.3 0.0 0.045 13.3 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain TehB PF03848.14 gi|294496539|ref|YP_003543032.1| - 0.028 13.8 0.0 0.037 13.4 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB PrmA PF06325.13 gi|294496539|ref|YP_003543032.1| - 0.03 13.7 0.0 0.046 13.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) BofA PF07441.11 gi|294496540|ref|YP_003543033.1| - 1.7e-07 31.3 23.7 2.1e-07 31.0 23.7 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA WBS28 PF15164.6 gi|294496540|ref|YP_003543033.1| - 0.66 9.2 3.6 1 8.6 3.6 1.2 1 0 0 1 1 1 0 Williams-Beuren syndrome chromosomal region 28 protein homologue Nuc_deoxyrib_tr PF05014.15 gi|294496541|ref|YP_003543034.1| - 4.8e-09 36.3 0.0 5.3e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase DUF4406 PF14359.6 gi|294496541|ref|YP_003543034.1| - 0.013 16.0 0.0 1.3 9.6 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4406) Nuc_deoxyri_tr2 PF15891.5 gi|294496541|ref|YP_003543034.1| - 0.042 14.2 0.0 0.053 13.8 0.0 1.2 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase like Peptidase_U32 PF01136.19 gi|294496542|ref|YP_003543035.1| - 1.4e-116 387.6 0.0 9e-87 290.1 0.0 2.3 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.8 gi|294496542|ref|YP_003543035.1| - 1.8e-25 89.6 0.0 3.1e-25 88.9 0.0 1.4 1 0 0 1 1 1 1 Collagenase MazG PF03819.17 gi|294496543|ref|YP_003543036.1| - 4.8e-16 58.7 0.0 5.7e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.17 gi|294496543|ref|YP_003543036.1| - 1.4e-06 28.6 0.3 1.7e-06 28.4 0.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG-like PF12643.7 gi|294496543|ref|YP_003543036.1| - 0.00013 22.1 0.0 0.0002 21.6 0.0 1.1 1 0 0 1 1 1 1 MazG-like family DUF3782 PF12644.7 gi|294496543|ref|YP_003543036.1| - 0.0012 19.0 0.0 0.002 18.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3782) His_biosynth PF00977.21 gi|294496544|ref|YP_003543037.1| - 6.6e-89 297.3 0.5 7.6e-89 297.1 0.5 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|294496544|ref|YP_003543037.1| - 1.6e-06 27.6 0.2 0.0046 16.3 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|294496544|ref|YP_003543037.1| - 2.7e-06 26.7 0.0 0.0043 16.2 0.1 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|294496544|ref|YP_003543037.1| - 3.6e-06 26.6 0.2 0.058 12.8 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase G3P_antiterm PF04309.12 gi|294496544|ref|YP_003543037.1| - 1.2e-05 24.8 0.3 0.0071 15.8 0.1 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 gi|294496544|ref|YP_003543037.1| - 2e-05 24.0 0.1 0.053 12.8 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|294496544|ref|YP_003543037.1| - 0.0002 20.7 0.0 0.069 12.4 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|294496544|ref|YP_003543037.1| - 0.0058 15.7 0.1 0.33 9.9 0.0 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain PcrB PF01884.17 gi|294496544|ref|YP_003543037.1| - 0.081 12.4 1.1 0.16 11.4 0.1 2.0 2 1 1 3 3 3 0 PcrB family RimM PF01782.18 gi|294496545|ref|YP_003543038.1| - 0.0028 17.8 0.0 0.0038 17.4 0.0 1.1 1 0 0 1 1 1 1 RimM N-terminal domain DUF4198 PF10670.9 gi|294496546|ref|YP_003543039.1| - 8.1e-26 91.7 2.0 1.8e-25 90.6 2.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4198) PGF-CTERM PF18204.1 gi|294496546|ref|YP_003543039.1| - 7e-07 29.0 2.7 1.3e-06 28.2 2.7 1.4 1 0 0 1 1 1 1 PGF-CTERM motif CbiM PF01891.16 gi|294496547|ref|YP_003543040.1| - 3.1e-49 167.7 21.8 3.4e-49 167.5 21.8 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region CarboxypepD_reg PF13620.6 gi|294496548|ref|YP_003543041.1| - 0.00018 21.7 0.0 0.00026 21.2 0.0 1.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|294496548|ref|YP_003543041.1| - 0.00035 20.5 0.0 0.00058 19.8 0.0 1.4 1 0 0 1 1 1 1 CarboxypepD_reg-like domain SpaA PF17802.1 gi|294496548|ref|YP_003543041.1| - 0.037 14.3 0.0 0.063 13.6 0.0 1.3 1 0 0 1 1 1 0 Prealbumin-like fold domain SdrD_B PF17210.3 gi|294496548|ref|YP_003543041.1| - 0.059 13.6 0.0 0.079 13.2 0.0 1.2 1 0 0 1 1 1 0 SdrD B-like domain TTR-52 PF01060.23 gi|294496548|ref|YP_003543041.1| - 0.17 12.6 0.0 0.28 11.9 0.0 1.3 1 0 0 1 1 1 0 Transthyretin-like family CbiQ PF02361.16 gi|294496549|ref|YP_003543042.1| - 2.4e-40 138.5 14.3 3.7e-40 137.9 14.3 1.2 1 0 0 1 1 1 1 Cobalt transport protein LtuB PF17455.2 gi|294496549|ref|YP_003543042.1| - 0.0066 17.0 0.2 0.069 13.8 0.0 2.2 2 0 0 2 2 2 1 Late transcription unit B ABC_tran PF00005.27 gi|294496550|ref|YP_003543043.1| - 4.5e-32 111.4 0.0 7.3e-32 110.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|294496550|ref|YP_003543043.1| - 2.1e-14 54.1 0.8 5.7e-10 39.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|294496550|ref|YP_003543043.1| - 2.8e-06 27.0 0.3 3.6e-05 23.3 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|294496550|ref|YP_003543043.1| - 0.00038 20.3 0.9 0.075 12.7 0.2 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|294496550|ref|YP_003543043.1| - 0.00065 20.3 0.1 0.00076 20.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|294496550|ref|YP_003543043.1| - 0.014 15.9 0.3 0.15 12.5 0.3 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) BCA_ABC_TP_C PF12399.8 gi|294496550|ref|YP_003543043.1| - 0.017 15.1 0.0 0.033 14.1 0.0 1.5 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter IstB_IS21 PF01695.17 gi|294496550|ref|YP_003543043.1| - 0.023 14.4 0.0 2 8.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|294496550|ref|YP_003543043.1| - 0.03 14.0 0.1 0.073 12.8 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain KdpD PF02702.17 gi|294496550|ref|YP_003543043.1| - 0.064 12.7 0.1 0.11 12.0 0.1 1.3 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain cobW PF02492.19 gi|294496550|ref|YP_003543043.1| - 0.085 12.4 0.1 0.18 11.4 0.0 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.6 gi|294496550|ref|YP_003543043.1| - 0.12 12.6 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 gi|294496550|ref|YP_003543043.1| - 0.13 12.0 0.8 0.3 10.8 0.0 2.0 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.6 gi|294496550|ref|YP_003543043.1| - 0.15 12.2 0.0 0.41 10.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain BKACE PF05853.12 gi|294496550|ref|YP_003543043.1| - 0.17 11.1 0.2 1 8.6 0.1 1.9 2 0 0 2 2 2 0 beta-keto acid cleavage enzyme ABC_tran PF00005.27 gi|294496551|ref|YP_003543044.1| - 5.8e-41 140.2 0.0 6.5e-21 75.3 0.0 2.5 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|294496551|ref|YP_003543044.1| - 4.1e-14 52.6 8.8 1.1e-06 28.2 2.5 4.2 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|294496551|ref|YP_003543044.1| - 3.7e-12 45.9 3.2 7.3e-12 44.9 3.2 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|294496551|ref|YP_003543044.1| - 4.8e-09 36.5 2.8 0.17 11.6 0.1 4.2 2 2 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system Fer4 PF00037.27 gi|294496551|ref|YP_003543044.1| - 5.2e-08 32.4 5.1 5.2e-08 32.4 5.1 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Rad17 PF03215.15 gi|294496551|ref|YP_003543044.1| - 1.5e-05 25.0 0.0 0.14 12.1 0.0 2.6 3 0 0 3 3 2 2 Rad17 P-loop domain AAA_16 PF13191.6 gi|294496551|ref|YP_003543044.1| - 1.6e-05 25.4 0.1 0.082 13.3 0.0 3.2 3 0 0 3 3 3 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|294496551|ref|YP_003543044.1| - 2.8e-05 24.1 0.4 0.091 12.7 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase Fer4_6 PF12837.7 gi|294496551|ref|YP_003543044.1| - 8.3e-05 22.5 3.4 8.3e-05 22.5 3.4 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_15 PF13175.6 gi|294496551|ref|YP_003543044.1| - 0.00012 22.0 1.0 0.81 9.3 0.0 3.3 3 0 0 3 3 3 1 AAA ATPase domain Fer4_2 PF12797.7 gi|294496551|ref|YP_003543044.1| - 0.00026 20.9 1.6 0.00026 20.9 1.6 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_29 PF13555.6 gi|294496551|ref|YP_003543044.1| - 0.00038 20.1 0.9 0.91 9.3 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|294496551|ref|YP_003543044.1| - 0.00045 20.6 0.5 1.6 9.1 0.1 2.8 3 0 0 3 3 2 2 RNA helicase Fer4_9 PF13187.6 gi|294496551|ref|YP_003543044.1| - 0.00057 20.0 8.1 0.0012 19.0 8.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_22 PF13401.6 gi|294496551|ref|YP_003543044.1| - 0.00095 19.5 0.2 0.34 11.2 0.0 2.6 2 1 0 2 2 2 1 AAA domain Fer4_21 PF14697.6 gi|294496551|ref|YP_003543044.1| - 0.0012 19.0 7.0 0.0023 18.1 7.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_24 PF13479.6 gi|294496551|ref|YP_003543044.1| - 0.0013 18.5 0.5 0.75 9.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain Fer4_7 PF12838.7 gi|294496551|ref|YP_003543044.1| - 0.0015 19.0 9.6 0.0086 16.6 9.9 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain AAA_23 PF13476.6 gi|294496551|ref|YP_003543044.1| - 0.002 18.6 1.8 1.1 9.7 0.4 2.6 2 0 0 2 2 2 1 AAA domain Fer4_10 PF13237.6 gi|294496551|ref|YP_003543044.1| - 0.0024 18.0 11.2 0.0074 16.4 1.6 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA PF00004.29 gi|294496551|ref|YP_003543044.1| - 0.0031 17.9 0.0 1.6 9.1 0.0 2.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|294496551|ref|YP_003543044.1| - 0.0041 17.1 0.4 3.2 7.8 0.0 3.8 3 1 0 3 3 3 1 AAA domain SbcCD_C PF13558.6 gi|294496551|ref|YP_003543044.1| - 0.012 15.8 0.0 13 6.0 0.0 3.1 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 gi|294496551|ref|YP_003543044.1| - 0.016 15.1 0.1 2.3 8.1 0.0 2.4 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|294496551|ref|YP_003543044.1| - 0.017 15.3 1.0 0.42 10.8 0.1 2.8 2 1 0 2 2 2 0 AAA domain Fer4_16 PF13484.6 gi|294496551|ref|YP_003543044.1| - 0.045 14.7 0.5 0.045 14.7 0.5 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain MMR_HSR1 PF01926.23 gi|294496551|ref|YP_003543044.1| - 0.046 13.8 0.1 5.8 7.0 0.0 3.1 3 0 0 3 3 3 0 50S ribosome-binding GTPase Fer4_8 PF13183.6 gi|294496551|ref|YP_003543044.1| - 0.074 13.5 0.3 0.074 13.5 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain AAA_18 PF13238.6 gi|294496551|ref|YP_003543044.1| - 0.075 13.6 0.2 38 4.8 0.0 3.2 3 0 0 3 3 3 0 AAA domain MeaB PF03308.16 gi|294496551|ref|YP_003543044.1| - 0.12 11.3 1.6 3.8 6.4 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF87 PF01935.17 gi|294496551|ref|YP_003543044.1| - 0.16 12.0 2.3 9.1 6.3 0.1 2.8 3 0 0 3 3 2 0 Helicase HerA, central domain NB-ARC PF00931.22 gi|294496551|ref|YP_003543044.1| - 0.19 10.9 0.2 3.2 6.9 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain Fer4_4 PF12800.7 gi|294496551|ref|YP_003543044.1| - 0.2 12.3 14.3 0.052 14.1 3.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_30 PF13604.6 gi|294496551|ref|YP_003543044.1| - 0.23 11.2 0.9 16 5.1 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.6 gi|294496551|ref|YP_003543044.1| - 0.26 10.8 3.3 4.6 6.8 0.0 3.5 4 0 0 4 4 4 0 AAA domain AAA_5 PF07728.14 gi|294496551|ref|YP_003543044.1| - 0.31 11.0 1.0 44 4.1 0.1 2.9 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) Fer4_22 PF17179.4 gi|294496551|ref|YP_003543044.1| - 2 9.3 6.6 0.71 10.8 3.3 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain NTPase_1 PF03266.15 gi|294496551|ref|YP_003543044.1| - 2.3 8.1 5.7 19 5.1 0.1 3.4 4 0 0 4 4 3 0 NTPase FUSC_2 PF13515.6 gi|294496552|ref|YP_003543045.1| - 0.0008 19.5 1.1 0.00086 19.4 1.1 1.2 1 0 0 1 1 1 1 Fusaric acid resistance protein-like Phage_holin_3_6 PF07332.11 gi|294496552|ref|YP_003543045.1| - 0.11 12.5 4.2 0.15 12.1 4.2 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Lactamase_B_2 PF12706.7 gi|294496553|ref|YP_003543046.1| - 8.1e-06 25.5 0.0 1.6e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|294496553|ref|YP_003543046.1| - 0.002 18.2 0.4 0.0046 17.0 0.4 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|294496553|ref|YP_003543046.1| - 0.027 14.4 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Thioredoxin PF00085.20 gi|294496554|ref|YP_003543047.1| - 2.9e-23 81.8 0.0 3.1e-23 81.7 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|294496554|ref|YP_003543047.1| - 1.2e-09 38.6 0.0 1.8e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|294496554|ref|YP_003543047.1| - 3.3e-06 27.3 0.0 0.0012 19.1 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like KaiB PF07689.12 gi|294496554|ref|YP_003543047.1| - 5.9e-06 25.9 0.0 7e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 KaiB domain Glutaredoxin PF00462.24 gi|294496554|ref|YP_003543047.1| - 7e-06 26.2 0.1 1.3e-05 25.3 0.1 1.5 1 1 0 1 1 1 1 Glutaredoxin DUF836 PF05768.14 gi|294496554|ref|YP_003543047.1| - 0.00013 22.3 0.0 0.00015 22.1 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) TraF PF13728.6 gi|294496554|ref|YP_003543047.1| - 0.00013 21.8 0.0 0.00015 21.7 0.0 1.0 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 gi|294496554|ref|YP_003543047.1| - 0.00049 20.1 0.0 0.00057 19.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.6 gi|294496554|ref|YP_003543047.1| - 0.00083 19.1 0.0 0.00098 18.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.10 gi|294496554|ref|YP_003543047.1| - 0.00083 19.1 0.1 0.021 14.5 0.0 2.0 1 1 1 2 2 2 1 Redoxin TrbC_Ftype PF09673.10 gi|294496554|ref|YP_003543047.1| - 0.016 15.3 0.0 0.018 15.1 0.0 1.1 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein AhpC-TSA PF00578.21 gi|294496554|ref|YP_003543047.1| - 0.077 12.9 0.0 0.13 12.2 0.0 1.5 1 1 0 1 1 1 0 AhpC/TSA family Ribosomal_L9_C PF03948.14 gi|294496554|ref|YP_003543047.1| - 0.1 13.0 0.5 4.9 7.7 0.1 2.0 1 1 1 2 2 2 0 Ribosomal protein L9, C-terminal domain DSBA PF01323.20 gi|294496554|ref|YP_003543047.1| - 0.12 12.2 0.0 0.84 9.4 0.0 1.8 1 1 1 2 2 2 0 DSBA-like thioredoxin domain HyaE PF07449.11 gi|294496554|ref|YP_003543047.1| - 0.13 12.3 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE F420_ligase PF01996.16 gi|294496555|ref|YP_003543048.1| - 1.7e-58 197.9 0.2 1.9e-58 197.7 0.2 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase ThiC_Rad_SAM PF01964.18 gi|294496556|ref|YP_003543049.1| - 8.7e-143 476.1 0.1 9.9e-143 475.9 0.1 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family MTHFR PF02219.17 gi|294496557|ref|YP_003543050.1| - 1.4e-30 106.6 0.0 1.6e-30 106.4 0.0 1.1 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase MTHFR_C PF12225.8 gi|294496558|ref|YP_003543051.1| - 5.4e-32 109.3 0.4 5.4e-32 109.3 0.4 2.0 2 0 0 2 2 2 1 Methylene-tetrahydrofolate reductase C terminal zf-RING_6 PF14835.6 gi|294496558|ref|YP_003543051.1| - 0.91 9.4 5.8 0.59 10.0 1.7 2.3 2 0 0 2 2 2 0 zf-RING of BARD1-type protein Hydant_A_N PF05378.13 gi|294496559|ref|YP_003543052.1| - 1.2e-33 116.3 4.9 1.1e-29 103.4 0.7 3.4 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region Hydantoinase_A PF01968.18 gi|294496559|ref|YP_003543052.1| - 3.6e-32 111.8 0.5 3.6e-32 111.8 0.5 2.6 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|294496559|ref|YP_003543052.1| - 1.4e-07 30.5 0.7 0.004 15.8 0.0 2.3 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.20 gi|294496559|ref|YP_003543052.1| - 0.0052 16.3 0.2 3.3 7.1 0.0 2.8 3 0 0 3 3 3 2 BadF/BadG/BcrA/BcrD ATPase family DUF4003 PF13170.6 gi|294496559|ref|YP_003543052.1| - 0.021 14.2 0.6 0.038 13.4 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4003) ROK PF00480.20 gi|294496559|ref|YP_003543052.1| - 0.023 14.2 0.4 0.18 11.2 0.0 2.3 2 0 0 2 2 2 0 ROK family EutA PF06277.11 gi|294496559|ref|YP_003543052.1| - 0.057 12.3 0.2 0.3 9.9 0.0 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation protein EutA StbA PF06406.11 gi|294496559|ref|YP_003543052.1| - 0.17 11.1 0.5 0.3 10.3 0.1 1.6 2 0 0 2 2 2 0 StbA protein Pterin_bind PF00809.22 gi|294496560|ref|YP_003543053.1| - 1.1e-56 192.3 0.0 1.5e-56 191.8 0.0 1.2 1 0 0 1 1 1 1 Pterin binding enzyme THF_DHG_CYH_C PF02882.19 gi|294496561|ref|YP_003543054.1| - 1.2e-64 216.5 2.5 1.5e-64 216.1 2.5 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|294496561|ref|YP_003543054.1| - 6.5e-40 136.0 0.6 9.5e-40 135.5 0.6 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AdoHcyase_NAD PF00670.21 gi|294496561|ref|YP_003543054.1| - 0.01 15.9 2.6 0.7 10.0 2.6 2.3 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain SHMT PF00464.19 gi|294496562|ref|YP_003543055.1| - 5.8e-168 558.6 0.4 6.9e-168 558.4 0.4 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|294496562|ref|YP_003543055.1| - 3.3e-09 36.4 0.0 4.4e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|294496562|ref|YP_003543055.1| - 8.9e-06 25.2 0.2 1.2e-05 24.8 0.2 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|294496562|ref|YP_003543055.1| - 0.0047 16.3 0.1 0.0061 15.9 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.20 gi|294496562|ref|YP_003543055.1| - 0.0051 15.6 0.0 0.01 14.6 0.0 1.6 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Formyl_trans_N PF00551.19 gi|294496563|ref|YP_003543056.1| - 7.5e-57 192.0 0.0 8.5e-57 191.8 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase HTH_3 PF01381.22 gi|294496564|ref|YP_003543057.1| - 2.9e-08 33.7 0.0 9.8e-08 31.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|294496564|ref|YP_003543057.1| - 1.3e-07 31.6 0.0 3.3e-07 30.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|294496564|ref|YP_003543057.1| - 4.4e-06 27.0 0.1 8.3e-06 26.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|294496564|ref|YP_003543057.1| - 0.0015 18.4 0.3 0.005 16.7 0.1 2.0 2 0 0 2 2 2 1 HTH domain YdaS_antitoxin PF15943.5 gi|294496564|ref|YP_003543057.1| - 0.027 14.3 0.0 0.18 11.7 0.0 2.3 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT NUMOD1 PF07453.13 gi|294496564|ref|YP_003543057.1| - 0.034 14.4 0.1 0.076 13.3 0.1 1.6 1 0 0 1 1 1 0 NUMOD1 domain HTH_Crp_2 PF13545.6 gi|294496564|ref|YP_003543057.1| - 0.11 12.5 0.0 0.3 11.1 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF1743 PF08489.11 gi|294496565|ref|YP_003543058.1| - 2.3e-43 146.9 0.4 1.4e-42 144.4 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|294496565|ref|YP_003543058.1| - 0.007 16.3 0.0 0.016 15.2 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain zinc-ribbons_6 PF07191.12 gi|294496565|ref|YP_003543058.1| - 0.024 14.6 1.5 0.055 13.5 1.5 1.6 1 0 0 1 1 1 0 zinc-ribbons C1_1 PF00130.22 gi|294496565|ref|YP_003543058.1| - 0.099 12.5 2.7 0.21 11.5 2.7 1.5 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Rep_fac-A_C PF08646.10 gi|294496565|ref|YP_003543058.1| - 0.13 12.0 2.9 0.36 10.6 2.9 1.7 1 0 0 1 1 1 0 Replication factor-A C terminal domain OrfB_Zn_ribbon PF07282.11 gi|294496565|ref|YP_003543058.1| - 0.21 11.6 4.3 0.57 10.2 4.3 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|294496565|ref|YP_003543058.1| - 0.35 10.9 4.4 0.9 9.6 4.4 1.6 1 0 0 1 1 1 0 Double zinc ribbon zf-LITAF-like PF10601.9 gi|294496565|ref|YP_003543058.1| - 0.59 10.4 2.4 16 5.9 0.3 2.5 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|294496565|ref|YP_003543058.1| - 0.83 9.6 5.9 1.8 8.5 5.9 1.6 1 0 0 1 1 1 0 SprT-like zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|294496565|ref|YP_003543058.1| - 1.5 8.9 6.9 3.1 7.8 6.9 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF2757 PF10955.8 gi|294496565|ref|YP_003543058.1| - 7.2 6.9 6.9 12 6.2 0.2 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2757) NAD_synthase PF02540.17 gi|294496566|ref|YP_003543059.1| - 5.3e-79 264.7 0.0 6.1e-79 264.5 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|294496566|ref|YP_003543059.1| - 0.00013 20.9 0.0 0.00086 18.2 0.0 1.9 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|294496566|ref|YP_003543059.1| - 0.013 15.2 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase ATPase PF06745.13 gi|294496567|ref|YP_003543060.1| - 1.7e-67 227.2 5.7 2.6e-36 125.1 0.1 2.2 2 0 0 2 2 2 2 KaiC DnaB_C PF03796.15 gi|294496567|ref|YP_003543060.1| - 2.2e-14 53.4 0.0 4.5e-07 29.5 0.0 2.4 2 1 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|294496567|ref|YP_003543060.1| - 2.7e-09 36.9 0.5 0.0016 18.0 0.3 3.4 2 1 0 2 2 2 2 AAA domain GvpD PF07088.11 gi|294496567|ref|YP_003543060.1| - 3.7e-08 32.4 0.8 8.3e-06 24.7 0.2 3.0 2 1 0 2 2 2 1 GvpD gas vesicle protein AAA_22 PF13401.6 gi|294496567|ref|YP_003543060.1| - 7e-07 29.6 0.1 0.00063 20.0 0.1 2.4 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|294496567|ref|YP_003543060.1| - 3.3e-06 26.6 0.5 0.064 12.5 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Rad51 PF08423.11 gi|294496567|ref|YP_003543060.1| - 3.9e-06 26.3 4.7 0.018 14.3 0.2 2.8 3 0 0 3 3 3 2 Rad51 ATPase_2 PF01637.18 gi|294496567|ref|YP_003543060.1| - 5.4e-06 26.5 0.7 0.075 12.9 0.1 2.4 2 0 0 2 2 2 2 ATPase domain predominantly from Archaea RecA PF00154.21 gi|294496567|ref|YP_003543060.1| - 1.1e-05 25.1 2.3 0.0073 15.8 0.1 2.9 2 1 0 2 2 2 2 recA bacterial DNA recombination protein AAA_14 PF13173.6 gi|294496567|ref|YP_003543060.1| - 1.8e-05 24.7 3.3 0.02 14.9 0.6 3.4 3 2 0 3 3 2 2 AAA domain ResIII PF04851.15 gi|294496567|ref|YP_003543060.1| - 0.00053 20.0 1.7 0.15 12.0 1.4 3.0 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|294496567|ref|YP_003543060.1| - 0.00068 19.5 0.5 0.26 11.1 0.0 2.6 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|294496567|ref|YP_003543060.1| - 0.0013 18.5 0.0 0.92 9.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|294496567|ref|YP_003543060.1| - 0.0018 18.4 0.0 0.83 9.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|294496567|ref|YP_003543060.1| - 0.002 18.5 1.1 0.19 12.1 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain Viral_helicase1 PF01443.18 gi|294496567|ref|YP_003543060.1| - 0.0024 17.6 0.1 0.0087 15.8 0.0 1.9 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase PhoH PF02562.16 gi|294496567|ref|YP_003543060.1| - 0.0089 15.5 6.8 3.2 7.2 0.1 3.9 3 1 1 4 4 4 2 PhoH-like protein AAA PF00004.29 gi|294496567|ref|YP_003543060.1| - 0.0094 16.4 6.5 1.5 9.2 0.0 3.0 2 2 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|294496567|ref|YP_003543060.1| - 0.0094 15.5 0.4 1.1 8.8 0.0 2.8 3 0 0 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain AAA_7 PF12775.7 gi|294496567|ref|YP_003543060.1| - 0.012 15.1 2.0 1.5 8.3 0.0 3.1 3 1 0 3 3 3 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|294496567|ref|YP_003543060.1| - 0.013 15.2 0.4 3.2 7.4 0.0 2.9 3 0 0 3 3 3 0 Sigma-54 interaction domain T2SSE PF00437.20 gi|294496567|ref|YP_003543060.1| - 0.02 14.0 2.4 1.4 7.9 0.1 2.9 3 0 0 3 3 3 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|294496567|ref|YP_003543060.1| - 0.025 14.9 1.2 1.2 9.4 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|294496567|ref|YP_003543060.1| - 0.033 13.9 0.2 0.55 9.9 0.0 2.6 3 0 0 3 3 2 0 AAA domain IstB_IS21 PF01695.17 gi|294496567|ref|YP_003543060.1| - 0.044 13.5 1.3 11 5.7 0.0 3.0 2 1 1 3 3 3 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|294496567|ref|YP_003543060.1| - 0.073 12.3 1.1 0.68 9.2 0.0 2.5 2 1 0 2 2 2 0 Zeta toxin Terminase_6C PF17289.2 gi|294496567|ref|YP_003543060.1| - 0.075 13.1 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Terminase RNaseH-like domain NACHT PF05729.12 gi|294496567|ref|YP_003543060.1| - 0.092 12.7 1.4 0.15 12.0 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_29 PF13555.6 gi|294496567|ref|YP_003543060.1| - 0.13 12.0 2.3 2 8.2 0.0 3.2 3 0 0 3 3 3 0 P-loop containing region of AAA domain ATP_bind_1 PF03029.17 gi|294496567|ref|YP_003543060.1| - 0.62 9.8 4.2 0.64 9.7 0.1 2.4 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|294496567|ref|YP_003543060.1| - 0.66 10.5 5.0 1.6 9.3 0.2 3.0 2 2 0 2 2 2 0 AAA domain PIN_6 PF17146.4 gi|294496568|ref|YP_003543061.1| - 1.9e-13 50.7 0.0 2.7e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease zinc-ribbons_6 PF07191.12 gi|294496568|ref|YP_003543061.1| - 0.0043 17.0 0.1 0.0064 16.5 0.1 1.2 1 0 0 1 1 1 1 zinc-ribbons zf-C3HC4_3 PF13920.6 gi|294496568|ref|YP_003543061.1| - 0.018 14.9 1.6 0.029 14.2 1.6 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) PIN_5 PF08745.11 gi|294496568|ref|YP_003543061.1| - 0.022 14.2 0.3 0.046 13.1 0.2 1.7 1 1 0 2 2 2 0 PINc domain ribonuclease Prok-RING_1 PF14446.6 gi|294496568|ref|YP_003543061.1| - 0.04 13.9 1.0 0.083 12.8 1.0 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Fer4_11 PF13247.6 gi|294496568|ref|YP_003543061.1| - 0.063 13.4 0.1 0.093 12.9 0.1 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain DNA_ligase_ZBD PF03119.16 gi|294496568|ref|YP_003543061.1| - 0.075 13.1 0.2 0.16 12.0 0.2 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|294496568|ref|YP_003543061.1| - 0.31 11.2 2.5 0.9 9.7 2.5 1.7 1 1 0 1 1 1 0 Zinc ribbon domain Pribosyltran PF00156.27 gi|294496569|ref|YP_003543062.1| - 1.1e-19 70.5 0.1 1.8e-19 69.8 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|294496569|ref|YP_003543062.1| - 0.00068 19.1 0.0 0.00094 18.7 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|294496569|ref|YP_003543062.1| - 0.0031 17.1 0.2 0.0068 15.9 0.2 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase GerE PF00196.19 gi|294496569|ref|YP_003543062.1| - 0.0087 15.6 0.2 0.04 13.5 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Pribosyl_synth PF14572.6 gi|294496569|ref|YP_003543062.1| - 0.015 15.4 0.3 0.33 11.0 0.2 2.2 1 1 1 2 2 2 0 Phosphoribosyl synthetase-associated domain HTH_7 PF02796.15 gi|294496569|ref|YP_003543062.1| - 0.028 14.5 0.8 0.094 12.8 0.1 2.2 3 0 0 3 3 3 0 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|294496569|ref|YP_003543062.1| - 0.05 13.6 2.0 0.5 10.3 0.1 2.6 3 0 0 3 3 3 0 HTH domain Fe_dep_repress PF01325.19 gi|294496569|ref|YP_003543062.1| - 0.056 13.7 0.1 4.6 7.5 0.0 2.8 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain Terminase_5 PF06056.12 gi|294496569|ref|YP_003543062.1| - 0.13 12.1 0.0 5.8 6.9 0.0 2.5 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) Rho_N PF07498.12 gi|294496569|ref|YP_003543062.1| - 0.14 12.1 0.3 74 3.4 0.2 3.5 4 0 0 4 4 4 0 Rho termination factor, N-terminal domain DnaJ_CXXCXGXG PF00684.19 gi|294496570|ref|YP_003543063.1| - 5.2e-10 39.5 13.9 5.2e-10 39.5 13.9 2.4 2 0 0 2 2 2 1 DnaJ central domain tRNA_anti-codon PF01336.25 gi|294496570|ref|YP_003543063.1| - 1.4e-08 34.6 0.0 5.5e-08 32.7 0.0 2.0 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|294496570|ref|YP_003543063.1| - 2.1e-05 24.8 1.2 3.8e-05 23.9 0.1 2.0 2 0 0 2 2 1 1 S1 RNA binding domain DHH PF01368.20 gi|294496570|ref|YP_003543063.1| - 0.00063 19.9 0.3 0.0012 19.1 0.3 1.4 1 0 0 1 1 1 1 DHH family tRNA_anti_2 PF13742.6 gi|294496570|ref|YP_003543063.1| - 0.0033 17.6 0.0 0.0093 16.2 0.0 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Anti-TRAP PF15777.5 gi|294496570|ref|YP_003543063.1| - 0.011 15.6 21.6 0.48 10.4 6.2 2.7 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein S1_2 PF13509.6 gi|294496570|ref|YP_003543063.1| - 0.093 12.8 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 S1 domain zf-C4pol PF14260.6 gi|294496570|ref|YP_003543063.1| - 0.55 10.7 9.1 0.64 10.5 2.1 2.6 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta PolC_DP2 PF03833.13 gi|294496570|ref|YP_003543063.1| - 0.84 7.4 7.1 0.044 11.7 0.7 1.8 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 Zn-ribbon_8 PF09723.10 gi|294496570|ref|YP_003543063.1| - 1.1 9.4 22.2 0.76 10.0 0.2 3.9 3 1 0 3 3 3 0 Zinc ribbon domain HypA PF01155.19 gi|294496570|ref|YP_003543063.1| - 1.4 9.0 20.8 1.4 9.0 0.8 4.3 2 1 2 4 4 4 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|294496570|ref|YP_003543063.1| - 1.5 8.9 18.3 12 6.0 2.7 3.3 2 1 1 3 3 3 0 Double zinc ribbon TackOD1 PF18551.1 gi|294496570|ref|YP_003543063.1| - 5.1 6.7 13.1 7.7 6.1 0.4 2.9 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 zf-CHY PF05495.12 gi|294496570|ref|YP_003543063.1| - 6.6 7.3 8.2 4.6 7.8 2.9 2.8 1 1 1 2 2 2 0 CHY zinc finger DUF2072 PF09845.9 gi|294496570|ref|YP_003543063.1| - 8.1 6.7 11.7 0.19 12.0 2.9 2.7 2 0 0 2 2 2 0 Zn-ribbon containing protein Band_7 PF01145.25 gi|294496571|ref|YP_003543064.1| - 9.7e-33 113.7 3.9 1.6e-32 113.0 3.9 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|294496571|ref|YP_003543064.1| - 0.0066 16.2 0.3 0.013 15.2 0.1 1.6 2 0 0 2 2 2 1 SPFH domain-Band 7 family NfeD PF01957.18 gi|294496572|ref|YP_003543065.1| - 4.6e-14 52.6 0.6 1.4e-13 51.0 0.0 2.1 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|294496572|ref|YP_003543065.1| - 0.00029 20.8 0.5 0.00063 19.7 0.5 1.6 1 0 0 1 1 1 1 Clp protease AIRS_C PF02769.22 gi|294496573|ref|YP_003543066.1| - 5.2e-19 68.9 0.9 1.1e-18 67.8 0.9 1.6 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|294496573|ref|YP_003543066.1| - 1.2e-06 29.0 0.7 3.4e-06 27.6 0.7 1.9 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Vinculin PF01044.19 gi|294496573|ref|YP_003543066.1| - 0.075 11.3 0.0 0.12 10.6 0.0 1.2 1 0 0 1 1 1 0 Vinculin family GATase PF00117.28 gi|294496574|ref|YP_003543067.1| - 6.2e-22 78.3 0.0 7e-22 78.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|294496574|ref|YP_003543067.1| - 2e-06 27.8 0.0 1.9e-05 24.6 0.0 2.0 1 1 0 1 1 1 1 SNO glutamine amidotransferase family DJ-1_PfpI PF01965.24 gi|294496574|ref|YP_003543067.1| - 5.1e-06 26.4 0.0 7.6e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|294496574|ref|YP_003543067.1| - 7.1e-06 25.9 0.1 1.6e-05 24.8 0.1 1.6 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.14 gi|294496574|ref|YP_003543067.1| - 1.2e-05 25.0 0.1 3e-05 23.7 0.1 1.6 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain UDPG_MGDP_dh_N PF03721.14 gi|294496575|ref|YP_003543068.1| - 2.1e-62 210.0 0.1 4e-62 209.1 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|294496575|ref|YP_003543068.1| - 4.6e-37 126.1 0.0 8.3e-37 125.3 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|294496575|ref|YP_003543068.1| - 7.8e-29 100.2 0.0 2.3e-28 98.7 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|294496575|ref|YP_003543068.1| - 1.8e-06 28.4 0.0 0.0035 17.9 0.0 3.4 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|294496575|ref|YP_003543068.1| - 1.9e-05 24.7 0.0 5.5e-05 23.2 0.0 1.8 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|294496575|ref|YP_003543068.1| - 6.2e-05 23.0 0.0 0.00013 22.0 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|294496575|ref|YP_003543068.1| - 0.00092 19.7 0.0 0.0026 18.3 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DpaA_N PF16924.5 gi|294496575|ref|YP_003543068.1| - 0.001 19.1 0.1 0.02 15.0 0.0 2.9 3 1 0 3 3 3 1 Dipicolinate synthase subunit A N-terminal domain Pyr_redox_2 PF07992.14 gi|294496575|ref|YP_003543068.1| - 0.0011 18.3 0.0 0.0019 17.5 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|294496575|ref|YP_003543068.1| - 0.0013 18.4 0.1 0.0052 16.4 0.1 2.0 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_11 PF14833.6 gi|294496575|ref|YP_003543068.1| - 0.0028 17.9 0.1 0.025 14.8 0.0 2.3 2 0 0 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TrkA_N PF02254.18 gi|294496575|ref|YP_003543068.1| - 0.0029 17.9 0.2 0.011 16.0 0.0 2.1 2 0 0 2 2 2 1 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|294496575|ref|YP_003543068.1| - 0.0045 16.3 0.1 0.0078 15.5 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain GFO_IDH_MocA PF01408.22 gi|294496575|ref|YP_003543068.1| - 0.0091 16.8 0.0 0.022 15.6 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.15 gi|294496575|ref|YP_003543068.1| - 0.011 15.9 0.0 1.8 8.7 0.0 2.6 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|294496575|ref|YP_003543068.1| - 0.014 14.8 0.0 0.062 12.7 0.0 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|294496575|ref|YP_003543068.1| - 0.046 13.0 0.0 0.072 12.3 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain NAD_binding_8 PF13450.6 gi|294496575|ref|YP_003543068.1| - 0.052 13.8 0.9 0.095 12.9 0.1 1.9 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Rossmann-like PF10727.9 gi|294496575|ref|YP_003543068.1| - 0.13 12.1 0.1 0.38 10.6 0.0 1.8 2 0 0 2 2 2 0 Rossmann-like domain MTH865 PF07747.11 gi|294496576|ref|YP_003543069.1| - 6.2e-29 99.6 0.1 7e-29 99.4 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family HTH_5 PF01022.20 gi|294496577|ref|YP_003543070.1| - 5.1e-06 26.3 0.0 2.8e-05 23.9 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|294496577|ref|YP_003543070.1| - 0.00093 19.2 0.0 0.0018 18.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rio2_N PF09202.11 gi|294496577|ref|YP_003543070.1| - 0.0077 16.4 0.9 0.19 12.0 0.1 2.4 2 0 0 2 2 2 1 Rio2, N-terminal DUF932 PF06067.11 gi|294496577|ref|YP_003543070.1| - 0.0087 15.8 0.1 0.9 9.3 0.0 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF932) DUF4441 PF14536.6 gi|294496577|ref|YP_003543070.1| - 0.0095 16.1 6.3 0.012 15.8 5.1 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4441) DUF4423 PF14394.6 gi|294496577|ref|YP_003543070.1| - 0.011 15.4 1.8 0.086 12.5 0.1 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4423) PNPase PF03726.14 gi|294496577|ref|YP_003543070.1| - 0.029 14.9 3.6 0.28 11.7 0.0 3.1 3 1 0 3 3 3 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain TarH PF02203.15 gi|294496577|ref|YP_003543070.1| - 0.036 14.0 0.0 0.21 11.5 0.0 1.9 2 0 0 2 2 2 0 Tar ligand binding domain homologue HEPN_Apea PF18739.1 gi|294496577|ref|YP_003543070.1| - 2 8.9 5.6 4.2 7.8 5.6 1.5 1 0 0 1 1 1 0 Apea-like HEPN T2SSE PF00437.20 gi|294496578|ref|YP_003543071.1| - 1.2e-09 37.7 0.1 2.1e-09 36.8 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.29 gi|294496578|ref|YP_003543071.1| - 3.6e-06 26.7 0.2 1.5e-05 24.7 0.2 2.1 1 0 0 1 1 1 1 KH domain PIN PF01850.21 gi|294496578|ref|YP_003543071.1| - 0.00034 21.1 0.0 0.00078 19.9 0.0 1.6 1 0 0 1 1 1 1 PIN domain AAA_16 PF13191.6 gi|294496578|ref|YP_003543071.1| - 0.0011 19.4 0.0 0.0023 18.4 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain KH_2 PF07650.17 gi|294496578|ref|YP_003543071.1| - 0.0038 17.0 0.3 0.014 15.2 0.3 2.0 1 0 0 1 1 1 1 KH domain IstB_IS21 PF01695.17 gi|294496578|ref|YP_003543071.1| - 0.0049 16.6 0.0 0.0086 15.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein CbiA PF01656.23 gi|294496578|ref|YP_003543071.1| - 0.0051 16.9 0.0 0.012 15.6 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain KH_4 PF13083.6 gi|294496578|ref|YP_003543071.1| - 0.015 15.2 0.3 0.064 13.1 0.3 2.1 1 0 0 1 1 1 0 KH domain AAA_29 PF13555.6 gi|294496578|ref|YP_003543071.1| - 0.016 14.9 0.0 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|294496578|ref|YP_003543071.1| - 0.019 15.1 0.0 0.046 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|294496578|ref|YP_003543071.1| - 0.021 14.8 0.0 0.068 13.1 0.0 1.9 1 0 0 1 1 1 0 NTPase MeaB PF03308.16 gi|294496578|ref|YP_003543071.1| - 0.024 13.6 0.0 0.046 12.7 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|294496578|ref|YP_003543071.1| - 0.038 14.5 0.0 0.09 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|294496578|ref|YP_003543071.1| - 0.04 13.6 0.0 0.18 11.5 0.0 1.9 1 1 1 2 2 2 0 Thymidylate kinase ATPase PF06745.13 gi|294496578|ref|YP_003543071.1| - 0.049 13.0 0.0 0.13 11.6 0.0 1.7 1 0 0 1 1 1 0 KaiC KTI12 PF08433.10 gi|294496578|ref|YP_003543071.1| - 0.053 13.0 0.0 0.091 12.2 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_28 PF13521.6 gi|294496578|ref|YP_003543071.1| - 0.061 13.6 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|294496578|ref|YP_003543071.1| - 0.063 13.0 0.0 0.32 10.7 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 gi|294496578|ref|YP_003543071.1| - 0.072 12.7 0.0 0.17 11.4 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_5 PF07728.14 gi|294496578|ref|YP_003543071.1| - 0.075 13.0 0.0 0.18 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_11 PF13086.6 gi|294496578|ref|YP_003543071.1| - 0.075 12.8 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|294496578|ref|YP_003543071.1| - 0.078 12.7 0.0 5.1 6.8 0.0 2.5 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|294496578|ref|YP_003543071.1| - 0.086 12.5 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|294496578|ref|YP_003543071.1| - 0.099 12.1 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region APS_kinase PF01583.20 gi|294496578|ref|YP_003543071.1| - 0.1 12.5 0.0 0.43 10.5 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase NACHT PF05729.12 gi|294496578|ref|YP_003543071.1| - 0.13 12.2 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|294496578|ref|YP_003543071.1| - 0.14 12.6 0.0 0.33 11.4 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|294496578|ref|YP_003543071.1| - 0.14 12.2 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PRA-CH PF01502.18 gi|294496579|ref|YP_003543072.1| - 1.9e-35 120.5 0.3 2.3e-35 120.2 0.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase PepSY PF03413.19 gi|294496580|ref|YP_003543073.1| - 0.00024 21.6 0.0 0.007 16.9 0.0 3.2 2 2 0 2 2 2 1 Peptidase propeptide and YPEB domain SWI2_SNF2 PF18766.1 gi|294496580|ref|YP_003543073.1| - 0.025 14.3 0.1 7.8 6.1 0.0 2.3 2 0 0 2 2 2 0 SWI2/SNF2 ATPase NUC PF18510.1 gi|294496580|ref|YP_003543073.1| - 0.62 10.5 5.7 1 9.8 0.4 2.5 2 1 0 2 2 2 0 Nuclease domain Fe-S_biosyn PF01521.20 gi|294496581|ref|YP_003543074.1| - 5.8e-12 45.8 0.1 6.9e-12 45.6 0.1 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Pyr_redox PF00070.27 gi|294496581|ref|YP_003543074.1| - 0.024 15.2 0.0 0.036 14.6 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAC PF01849.18 gi|294496582|ref|YP_003543075.1| - 1.9e-18 66.2 2.4 1.9e-18 66.2 2.4 1.7 2 0 0 2 2 2 1 NAC domain UBA_4 PF14555.6 gi|294496582|ref|YP_003543075.1| - 0.0004 20.1 0.1 0.0014 18.4 0.0 1.8 2 0 0 2 2 2 1 UBA-like domain Sigma70_r3 PF04539.16 gi|294496582|ref|YP_003543075.1| - 0.0061 16.6 5.0 0.011 15.8 0.5 3.0 2 2 2 4 4 4 1 Sigma-70 region 3 Death PF00531.22 gi|294496582|ref|YP_003543075.1| - 0.044 14.0 0.0 10 6.4 0.0 2.2 2 0 0 2 2 2 0 Death domain RTC4 PF14474.6 gi|294496582|ref|YP_003543075.1| - 0.062 13.5 0.1 0.097 12.8 0.1 1.4 1 1 0 1 1 1 0 RTC4-like domain Pyr_redox_2 PF07992.14 gi|294496583|ref|YP_003543076.1| - 5.1e-45 153.9 0.0 7.4e-45 153.4 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|294496583|ref|YP_003543076.1| - 2.4e-19 69.6 0.0 6.1e-19 68.3 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|294496583|ref|YP_003543076.1| - 1.8e-14 54.0 0.1 4.8e-14 52.7 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|294496583|ref|YP_003543076.1| - 4.3e-10 39.3 0.0 1.8e-09 37.3 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|294496583|ref|YP_003543076.1| - 0.0054 16.0 0.0 0.014 14.7 0.0 1.6 1 0 0 1 1 1 1 Thi4 family K_oxygenase PF13434.6 gi|294496583|ref|YP_003543076.1| - 0.0067 15.6 0.1 0.23 10.6 0.0 2.7 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 gi|294496583|ref|YP_003543076.1| - 0.015 15.7 0.0 0.059 13.8 0.0 2.0 1 1 1 2 2 2 0 Putative NAD(P)-binding XdhC_C PF13478.6 gi|294496583|ref|YP_003543076.1| - 0.054 14.0 0.0 0.3 11.6 0.0 2.1 2 0 0 2 2 2 0 XdhC Rossmann domain ApbA PF02558.16 gi|294496583|ref|YP_003543076.1| - 0.12 12.1 0.1 1.2 8.7 0.0 2.6 3 1 0 3 3 3 0 Ketopantoate reductase PanE/ApbA HMGL-like PF00682.19 gi|294496585|ref|YP_003543078.1| - 2.8e-69 233.6 3.8 5.6e-69 232.6 3.8 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|294496585|ref|YP_003543078.1| - 7.9e-31 106.7 1.8 1.4e-30 105.9 1.8 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain SpoVS PF04232.12 gi|294496585|ref|YP_003543078.1| - 2.4 7.9 5.8 2.8 7.7 0.1 2.9 2 0 0 2 2 2 0 Stage V sporulation protein S (SpoVS) ABC_tran PF00005.27 gi|294496586|ref|YP_003543079.1| - 4e-33 114.8 0.0 5.5e-33 114.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|294496586|ref|YP_003543079.1| - 5.1e-09 36.4 0.6 0.0013 18.7 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|294496586|ref|YP_003543079.1| - 6.6e-07 29.0 0.0 1.4e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|294496586|ref|YP_003543079.1| - 1e-06 29.4 0.0 2.3e-06 28.3 0.0 1.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|294496586|ref|YP_003543079.1| - 3.4e-06 26.7 1.3 5.6e-05 22.7 1.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|294496586|ref|YP_003543079.1| - 6.3e-05 22.9 0.0 0.00014 21.7 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|294496586|ref|YP_003543079.1| - 0.00017 21.9 1.0 0.0035 17.6 0.7 2.4 2 1 0 2 2 1 1 AAA domain AAA_27 PF13514.6 gi|294496586|ref|YP_003543079.1| - 0.00078 19.1 0.0 0.0014 18.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|294496586|ref|YP_003543079.1| - 0.0012 17.7 0.4 1.7 7.4 0.2 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class NB-ARC PF00931.22 gi|294496586|ref|YP_003543079.1| - 0.004 16.4 3.1 0.031 13.5 3.1 2.0 1 1 0 1 1 1 1 NB-ARC domain AAA_16 PF13191.6 gi|294496586|ref|YP_003543079.1| - 0.0058 17.0 0.0 0.0097 16.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|294496586|ref|YP_003543079.1| - 0.0075 16.2 0.1 0.022 14.7 0.0 1.8 1 1 1 2 2 2 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|294496586|ref|YP_003543079.1| - 0.0082 16.1 0.3 0.015 15.2 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase Mg_chelatase PF01078.21 gi|294496586|ref|YP_003543079.1| - 0.016 14.6 0.0 0.046 13.1 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|294496586|ref|YP_003543079.1| - 0.017 15.2 0.0 1 9.4 0.0 2.8 2 1 1 3 3 3 0 AAA domain AAA_33 PF13671.6 gi|294496586|ref|YP_003543079.1| - 0.03 14.5 0.1 0.12 12.5 0.1 2.1 1 1 0 1 1 1 0 AAA domain Spore_IV_A PF09547.10 gi|294496586|ref|YP_003543079.1| - 0.074 12.0 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) AAA_24 PF13479.6 gi|294496586|ref|YP_003543079.1| - 0.093 12.4 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|294496586|ref|YP_003543079.1| - 0.11 11.7 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.6 gi|294496586|ref|YP_003543079.1| - 0.11 12.1 0.0 0.29 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|294496586|ref|YP_003543079.1| - 0.12 12.4 0.0 8.1 6.4 0.0 2.7 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|294496586|ref|YP_003543079.1| - 0.17 12.1 0.0 4.3 7.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|294496586|ref|YP_003543079.1| - 0.18 12.2 0.6 1.1 9.6 0.6 2.0 1 1 0 1 1 1 0 AAA domain FecCD PF01032.18 gi|294496587|ref|YP_003543080.1| - 1.4e-90 303.4 34.7 1.8e-90 303.1 34.7 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|294496587|ref|YP_003543080.1| - 0.00067 19.2 21.0 0.00067 19.2 21.0 1.5 2 0 0 2 2 2 1 ABC 3 transport family DUF2407_C PF13373.6 gi|294496587|ref|YP_003543080.1| - 5.6 7.1 4.7 19 5.4 0.2 2.9 3 0 0 3 3 3 0 DUF2407 C-terminal domain Peripla_BP_2 PF01497.18 gi|294496588|ref|YP_003543081.1| - 6.2e-52 176.5 0.0 8.9e-52 176.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Acid_PPase PF12689.7 gi|294496588|ref|YP_003543081.1| - 0.017 15.0 0.0 0.034 14.0 0.0 1.5 1 1 0 1 1 1 0 Acid Phosphatase Gram_pos_anchor PF00746.21 gi|294496589|ref|YP_003543082.1| - 2.7 8.0 4.5 0.6 10.1 0.4 1.9 2 0 0 2 2 2 0 LPXTG cell wall anchor motif PGF-CTERM PF18204.1 gi|294496589|ref|YP_003543082.1| - 3.2 7.9 6.6 0.34 10.9 1.1 2.3 2 0 0 2 2 2 0 PGF-CTERM motif Methyltransf_25 PF13649.6 gi|294496590|ref|YP_003543083.1| - 6.6e-12 46.0 0.0 2.3e-11 44.2 0.0 1.9 3 0 0 3 3 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|294496590|ref|YP_003543083.1| - 2.5e-08 34.5 0.1 3e-07 31.1 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.20 gi|294496590|ref|YP_003543083.1| - 3.3e-08 32.9 0.0 5.3e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.6 gi|294496590|ref|YP_003543083.1| - 2.8e-07 30.5 0.0 7.5e-07 29.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|294496590|ref|YP_003543083.1| - 4.4e-07 29.9 0.0 1.2e-06 28.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|294496590|ref|YP_003543083.1| - 8.1e-07 29.6 0.1 4.3e-06 27.3 0.0 2.2 3 0 0 3 3 2 1 Methyltransferase domain GidB PF02527.15 gi|294496590|ref|YP_003543083.1| - 3.5e-05 23.2 0.0 5.4e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G CMAS PF02353.20 gi|294496590|ref|YP_003543083.1| - 8.7e-05 21.9 0.0 0.00024 20.5 0.0 1.7 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|294496590|ref|YP_003543083.1| - 0.00016 21.2 0.0 0.00033 20.3 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|294496590|ref|YP_003543083.1| - 0.00072 19.5 0.1 0.0017 18.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|294496590|ref|YP_003543083.1| - 0.0014 18.0 0.0 0.0025 17.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|294496590|ref|YP_003543083.1| - 0.0015 18.3 0.0 0.0024 17.6 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.15 gi|294496590|ref|YP_003543083.1| - 0.0025 17.5 0.0 0.0042 16.7 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_16 PF10294.9 gi|294496590|ref|YP_003543083.1| - 0.0037 17.0 0.0 0.0063 16.3 0.0 1.5 1 0 0 1 1 1 1 Lysine methyltransferase tRNA_U5-meth_tr PF05958.11 gi|294496590|ref|YP_003543083.1| - 0.0038 16.3 0.0 0.006 15.6 0.0 1.3 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_15 PF09445.10 gi|294496590|ref|YP_003543083.1| - 0.0054 16.3 0.0 0.0092 15.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase DREV PF05219.12 gi|294496590|ref|YP_003543083.1| - 0.0072 15.5 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase Methyltr_RsmB-F PF01189.17 gi|294496590|ref|YP_003543083.1| - 0.031 13.9 0.0 0.055 13.1 0.0 1.4 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Met_10 PF02475.16 gi|294496590|ref|YP_003543083.1| - 0.036 13.8 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein PrmA PF06325.13 gi|294496590|ref|YP_003543083.1| - 0.048 13.0 0.0 0.099 12.0 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.17 gi|294496590|ref|YP_003543083.1| - 0.052 13.0 0.0 0.15 11.5 0.0 1.7 1 0 0 1 1 1 0 Putative methyltransferase TBCC_N PF16752.5 gi|294496590|ref|YP_003543083.1| - 0.11 13.0 0.7 2.3 8.7 0.0 2.5 3 0 0 3 3 2 0 Tubulin-specific chaperone C N-terminal domain DUF938 PF06080.12 gi|294496590|ref|YP_003543083.1| - 0.15 11.8 0.0 0.34 10.6 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF938) Dynactin_p62 PF05502.13 gi|294496590|ref|YP_003543083.1| - 1.2 7.8 3.4 1.9 7.2 3.4 1.2 1 0 0 1 1 1 0 Dynactin p62 family S-layer PF07752.11 gi|294496591|ref|YP_003543084.1| - 2.3e-67 226.8 7.8 3.1e-67 226.3 7.8 1.1 1 0 0 1 1 1 1 S-layer protein PGF-CTERM PF18204.1 gi|294496591|ref|YP_003543084.1| - 0.025 14.6 0.7 0.04 13.9 0.7 1.4 1 0 0 1 1 1 0 PGF-CTERM motif TatD_DNase PF01026.21 gi|294496592|ref|YP_003543085.1| - 3.3e-60 203.6 0.2 3.8e-60 203.4 0.2 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 gi|294496592|ref|YP_003543085.1| - 0.0013 18.2 0.4 0.0017 17.7 0.4 1.1 1 0 0 1 1 1 1 Amidohydrolase family Lactamase_B PF00753.27 gi|294496593|ref|YP_003543086.1| - 3.4e-30 105.5 0.5 3.9e-30 105.3 0.5 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|294496593|ref|YP_003543086.1| - 1.4e-08 34.5 0.0 1.7e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|294496593|ref|YP_003543086.1| - 0.0023 17.4 0.1 0.0044 16.5 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Radical_SAM_N PF08497.10 gi|294496594|ref|YP_003543087.1| - 2.2e-128 427.7 0.0 3e-128 427.3 0.0 1.2 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.8 gi|294496594|ref|YP_003543087.1| - 2.2e-23 83.3 0.0 3.8e-23 82.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.21 gi|294496594|ref|YP_003543087.1| - 3.2e-18 66.7 0.5 1e-16 61.7 0.1 3.0 2 1 1 3 3 3 1 Radical SAM superfamily B12-binding PF02310.19 gi|294496594|ref|YP_003543087.1| - 0.031 14.3 0.0 0.24 11.4 0.0 2.3 2 0 0 2 2 2 0 B12 binding domain ShK PF01549.24 gi|294496594|ref|YP_003543087.1| - 0.17 12.4 1.6 0.45 11.1 1.6 1.7 1 0 0 1 1 1 0 ShK domain-like Response_reg PF00072.24 gi|294496595|ref|YP_003543088.1| - 2.3e-19 69.6 1.7 6.9e-19 68.1 0.9 2.3 2 0 0 2 2 2 1 Response regulator receiver domain PAS_4 PF08448.10 gi|294496595|ref|YP_003543088.1| - 1.3e-10 41.5 0.0 7.4e-10 39.1 0.0 2.1 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|294496595|ref|YP_003543088.1| - 8.7e-10 38.5 0.4 7.5e-09 35.5 0.0 2.6 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|294496595|ref|YP_003543088.1| - 3.3e-09 36.7 0.0 8.4e-09 35.4 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|294496595|ref|YP_003543088.1| - 5e-08 33.2 1.5 3.3e-07 30.5 0.1 2.8 2 1 1 3 3 3 1 PAS domain PAS_3 PF08447.12 gi|294496595|ref|YP_003543088.1| - 1.8e-06 28.1 0.0 4.3e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|294496595|ref|YP_003543088.1| - 0.017 15.6 0.0 0.46 11.0 0.1 3.1 2 1 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|294496595|ref|YP_003543088.1| - 0.033 14.2 0.0 0.1 12.6 0.0 1.9 1 0 0 1 1 1 0 PAS domain Capsule_synth PF05159.14 gi|294496595|ref|YP_003543088.1| - 0.05 13.0 0.1 0.11 11.9 0.1 1.5 1 0 0 1 1 1 0 Capsule polysaccharide biosynthesis protein Pinin_SDK_N PF04697.13 gi|294496595|ref|YP_003543088.1| - 0.053 14.2 1.2 0.42 11.3 0.1 2.5 2 0 0 2 2 2 0 pinin/SDK conserved region CCG PF02754.16 gi|294496596|ref|YP_003543089.1| - 7.8e-33 112.6 2.1 7.4e-16 58.1 0.1 2.8 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|294496596|ref|YP_003543089.1| - 1.1e-10 41.8 4.3 1.1e-10 41.8 4.3 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|294496596|ref|YP_003543089.1| - 5.3e-10 39.7 6.1 5.3e-10 39.7 6.1 2.5 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|294496596|ref|YP_003543089.1| - 6.7e-10 39.4 3.3 6.7e-10 39.4 3.3 3.4 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|294496596|ref|YP_003543089.1| - 1.3e-07 31.6 18.6 4e-06 26.8 9.5 3.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|294496596|ref|YP_003543089.1| - 3.4e-06 26.6 18.6 7.9e-05 22.3 0.7 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|294496596|ref|YP_003543089.1| - 6.5e-05 23.0 15.3 0.00011 22.3 11.0 3.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294496596|ref|YP_003543089.1| - 8e-05 23.5 21.4 0.00086 20.2 10.9 3.2 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|294496596|ref|YP_003543089.1| - 0.00086 19.6 1.4 0.00086 19.6 1.4 4.3 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|294496596|ref|YP_003543089.1| - 0.0051 17.3 9.3 0.65 10.6 0.3 3.0 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|294496596|ref|YP_003543089.1| - 0.0079 16.3 14.0 0.055 13.6 0.4 3.6 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294496596|ref|YP_003543089.1| - 0.0095 16.0 13.0 0.028 14.5 3.9 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|294496596|ref|YP_003543089.1| - 0.031 14.5 3.0 2.5 8.3 0.1 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Tetraspanin PF00335.20 gi|294496596|ref|YP_003543089.1| - 0.094 12.4 0.4 0.77 9.4 0.4 2.3 1 1 0 1 1 1 0 Tetraspanin family Fer4_6 PF12837.7 gi|294496596|ref|YP_003543089.1| - 0.15 12.2 0.5 0.15 12.2 0.5 3.8 5 0 0 5 5 5 0 4Fe-4S binding domain FAD-oxidase_C PF02913.19 gi|294496597|ref|YP_003543090.1| - 1.4e-55 188.6 0.0 1.8e-55 188.3 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|294496597|ref|YP_003543090.1| - 3.2e-40 137.1 0.1 6.9e-40 136.0 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain DUF5591 PF17884.1 gi|294496598|ref|YP_003543091.1| - 1.6e-59 200.2 0.3 2.6e-59 199.5 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT PF01702.18 gi|294496598|ref|YP_003543091.1| - 3.5e-15 56.0 0.1 1.4e-14 54.0 0.1 1.9 2 0 0 2 2 2 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.6 gi|294496598|ref|YP_003543091.1| - 1.5e-14 53.9 0.0 3e-14 52.9 0.0 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|294496598|ref|YP_003543091.1| - 2.1e-13 50.0 0.4 1.4e-12 47.4 0.0 2.2 2 0 0 2 2 2 1 PUA domain DUF1033 PF06279.11 gi|294496598|ref|YP_003543091.1| - 0.041 14.1 0.1 0.074 13.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1033) Acetyltransf_1 PF00583.25 gi|294496599|ref|YP_003543092.1| - 7.4e-20 71.3 0.2 9.3e-20 71.0 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|294496599|ref|YP_003543092.1| - 2.9e-17 62.8 0.3 3.5e-17 62.5 0.3 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|294496599|ref|YP_003543092.1| - 2.2e-13 50.4 0.2 3.5e-13 49.8 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|294496599|ref|YP_003543092.1| - 6.4e-11 42.1 0.0 9.9e-11 41.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|294496599|ref|YP_003543092.1| - 1.8e-06 28.6 0.1 2.3e-06 28.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|294496599|ref|YP_003543092.1| - 4e-05 23.8 0.1 5.3e-05 23.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|294496599|ref|YP_003543092.1| - 0.001 18.6 0.3 0.0013 18.2 0.3 1.2 1 0 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_8 PF13523.6 gi|294496599|ref|YP_003543092.1| - 0.0014 18.4 0.2 0.0022 17.7 0.2 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|294496599|ref|YP_003543092.1| - 0.0014 18.7 0.0 0.025 14.7 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|294496599|ref|YP_003543092.1| - 0.0034 17.5 0.1 0.0075 16.4 0.0 1.6 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|294496599|ref|YP_003543092.1| - 0.054 13.2 0.1 0.079 12.7 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_18 PF18014.1 gi|294496599|ref|YP_003543092.1| - 0.11 12.4 0.0 0.85 9.5 0.0 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.6 gi|294496599|ref|YP_003543092.1| - 0.16 11.3 0.2 0.22 10.9 0.2 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase 2 UPF0058 PF01893.16 gi|294496600|ref|YP_003543093.1| - 5.5e-34 116.3 2.7 6.2e-34 116.2 2.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Aconitase_C PF00694.19 gi|294496602|ref|YP_003543095.1| - 1.4e-17 64.3 0.0 2.9e-17 63.2 0.1 1.6 1 1 1 2 2 2 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|294496602|ref|YP_003543095.1| - 0.0068 16.1 0.2 0.061 13.0 0.2 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Iso_dh PF00180.20 gi|294496603|ref|YP_003543096.1| - 3.8e-94 315.7 0.0 4.4e-94 315.5 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF2213 PF09979.9 gi|294496603|ref|YP_003543096.1| - 0.095 12.7 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2213) Radical_SAM PF04055.21 gi|294496604|ref|YP_003543097.1| - 1.3e-23 84.2 1.6 3.6e-23 82.7 0.0 2.2 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|294496604|ref|YP_003543097.1| - 8.7e-08 32.3 0.3 1.1e-06 28.8 0.0 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|294496604|ref|YP_003543097.1| - 1.9e-07 31.4 1.2 1.5e-06 28.5 0.0 2.5 1 1 1 2 2 2 1 4Fe-4S single cluster domain DUF1919 PF08942.10 gi|294496604|ref|YP_003543097.1| - 0.023 14.2 0.0 0.04 13.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1919) AP_endonuc_2 PF01261.24 gi|294496604|ref|YP_003543097.1| - 0.064 12.7 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel NRD1_2 PF01995.16 gi|294496605|ref|YP_003543098.1| - 1.3e-85 286.5 0.2 1.7e-85 286.1 0.2 1.1 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|294496605|ref|YP_003543098.1| - 1.4e-29 101.8 1.6 2.4e-29 101.1 1.6 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_21 PF13276.6 gi|294496605|ref|YP_003543098.1| - 0.12 12.6 0.3 0.24 11.5 0.3 1.5 1 0 0 1 1 1 0 HTH-like domain ABC1 PF03109.16 gi|294496606|ref|YP_003543099.1| - 1e-38 132.1 0.0 2.1e-38 131.1 0.0 1.5 1 0 0 1 1 1 1 ABC1 family Pkinase PF00069.25 gi|294496606|ref|YP_003543099.1| - 1.1e-07 31.6 0.1 2.5e-07 30.3 0.1 1.6 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|294496606|ref|YP_003543099.1| - 9.5e-06 25.7 0.1 3.2e-05 24.0 0.0 1.9 2 1 0 2 2 2 1 Phosphotransferase enzyme family RIO1 PF01163.22 gi|294496606|ref|YP_003543099.1| - 0.00038 20.1 0.3 0.0012 18.5 0.0 2.0 3 0 0 3 3 3 1 RIO1 family Choline_kinase PF01633.20 gi|294496606|ref|YP_003543099.1| - 0.012 15.3 0.4 0.47 10.0 0.3 2.3 2 0 0 2 2 2 0 Choline/ethanolamine kinase WaaY PF06176.11 gi|294496606|ref|YP_003543099.1| - 0.013 15.1 0.1 0.031 13.9 0.1 1.6 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.17 gi|294496606|ref|YP_003543099.1| - 0.013 14.8 0.1 0.035 13.4 0.1 1.6 1 1 0 1 1 1 0 Protein tyrosine kinase Phasin PF05597.11 gi|294496607|ref|YP_003543100.1| - 7.5e-08 32.4 7.4 1.8e-06 28.0 7.4 2.0 1 1 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) PRESAN PF09687.10 gi|294496607|ref|YP_003543100.1| - 0.00058 20.4 3.7 0.00076 20.0 3.7 1.2 1 0 0 1 1 1 1 Plasmodium RESA N-terminal PhoU PF01895.19 gi|294496607|ref|YP_003543100.1| - 0.0063 16.9 0.9 0.0063 16.9 0.9 1.7 1 1 1 2 2 2 1 PhoU domain BMFP PF04380.13 gi|294496607|ref|YP_003543100.1| - 0.0095 16.4 5.1 0.23 12.0 5.0 2.4 1 1 0 1 1 1 1 Membrane fusogenic activity NAGLU_C PF12972.7 gi|294496607|ref|YP_003543100.1| - 0.022 14.3 0.2 0.026 14.0 0.2 1.1 1 0 0 1 1 1 0 Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain PIN_12 PF16289.5 gi|294496607|ref|YP_003543100.1| - 0.025 15.1 3.5 0.03 14.8 3.5 1.1 1 0 0 1 1 1 0 PIN domain GPP34 PF05719.11 gi|294496607|ref|YP_003543100.1| - 0.055 13.5 0.1 0.063 13.3 0.1 1.1 1 0 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) TAFH PF07531.14 gi|294496607|ref|YP_003543100.1| - 0.056 13.5 3.7 0.12 12.5 1.6 2.0 1 1 1 2 2 2 0 NHR1 homology to TAF GST_C_2 PF13410.6 gi|294496607|ref|YP_003543100.1| - 0.1 12.6 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain Pex26 PF07163.12 gi|294496607|ref|YP_003543100.1| - 0.13 11.6 0.8 0.15 11.3 0.8 1.2 1 0 0 1 1 1 0 Pex26 protein RIC3 PF15361.6 gi|294496607|ref|YP_003543100.1| - 0.14 12.5 2.4 0.16 12.4 2.4 1.3 1 0 0 1 1 1 0 Resistance to inhibitors of cholinesterase homologue 3 MerR-DNA-bind PF09278.11 gi|294496607|ref|YP_003543100.1| - 0.27 11.8 1.5 0.72 10.4 1.5 1.8 1 1 0 1 1 1 0 MerR, DNA binding TMPIT PF07851.13 gi|294496607|ref|YP_003543100.1| - 0.46 9.7 4.8 0.53 9.5 4.8 1.0 1 0 0 1 1 1 0 TMPIT-like protein DUF4083 PF13314.6 gi|294496607|ref|YP_003543100.1| - 0.66 10.0 5.1 0.52 10.3 0.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4083) PBECR1 PF18809.1 gi|294496607|ref|YP_003543100.1| - 0.75 10.5 6.5 4.4 8.0 2.9 2.2 1 1 1 2 2 2 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1 XhlA PF10779.9 gi|294496607|ref|YP_003543100.1| - 2.9 8.2 8.1 0.63 10.3 4.5 1.8 2 0 0 2 2 2 0 Haemolysin XhlA YtxH PF12732.7 gi|294496607|ref|YP_003543100.1| - 7.5 7.2 7.2 41 4.8 7.2 2.1 1 1 0 1 1 1 0 YtxH-like protein ABC_tran PF00005.27 gi|294496608|ref|YP_003543101.1| - 7.6e-58 194.9 0.0 2.3e-27 96.2 0.0 2.6 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|294496608|ref|YP_003543101.1| - 2.3e-13 50.6 1.5 0.0016 18.3 0.1 4.2 4 0 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|294496608|ref|YP_003543101.1| - 1.8e-08 34.0 2.0 0.0042 16.8 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|294496608|ref|YP_003543101.1| - 1.9e-08 34.9 0.5 0.00023 21.6 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|294496608|ref|YP_003543101.1| - 2.8e-07 30.9 1.0 0.0069 16.7 0.0 3.3 3 0 0 3 3 3 2 AAA domain RsgA_GTPase PF03193.16 gi|294496608|ref|YP_003543101.1| - 2.9e-07 30.5 1.6 0.022 14.7 0.1 2.8 3 0 0 3 3 2 2 RsgA GTPase AAA_23 PF13476.6 gi|294496608|ref|YP_003543101.1| - 3.6e-07 30.9 0.1 0.0093 16.5 0.4 2.4 2 0 0 2 2 2 2 AAA domain Rad17 PF03215.15 gi|294496608|ref|YP_003543101.1| - 7.7e-07 29.2 0.0 0.044 13.7 0.0 2.5 2 0 0 2 2 2 2 Rad17 P-loop domain AAA_18 PF13238.6 gi|294496608|ref|YP_003543101.1| - 2.1e-06 28.3 0.2 0.14 12.7 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|294496608|ref|YP_003543101.1| - 4.1e-06 26.7 0.1 0.046 13.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain PRK PF00485.18 gi|294496608|ref|YP_003543101.1| - 2.2e-05 24.3 0.0 0.071 12.8 0.0 2.3 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family MeaB PF03308.16 gi|294496608|ref|YP_003543101.1| - 4.2e-05 22.6 0.6 0.0091 15.0 0.1 2.2 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB T2SSE PF00437.20 gi|294496608|ref|YP_003543101.1| - 5.1e-05 22.5 0.1 0.07 12.2 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein SMC_N PF02463.19 gi|294496608|ref|YP_003543101.1| - 5.4e-05 22.7 0.1 2 7.8 0.0 3.8 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_33 PF13671.6 gi|294496608|ref|YP_003543101.1| - 0.00024 21.3 0.0 0.086 13.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|294496608|ref|YP_003543101.1| - 0.00039 20.4 0.4 0.028 14.3 0.0 2.7 3 0 0 3 3 3 1 ATPase domain predominantly from Archaea Mg_chelatase PF01078.21 gi|294496608|ref|YP_003543101.1| - 0.00051 19.5 0.1 0.063 12.7 0.0 2.9 3 0 0 3 3 2 1 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|294496608|ref|YP_003543101.1| - 0.00054 19.7 0.1 0.36 10.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain MobB PF03205.14 gi|294496608|ref|YP_003543101.1| - 0.00055 19.8 0.9 0.15 12.0 0.0 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.29 gi|294496608|ref|YP_003543101.1| - 0.00066 20.1 0.0 0.43 11.0 0.0 3.6 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|294496608|ref|YP_003543101.1| - 0.00067 19.8 0.9 0.27 11.5 0.1 3.3 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 gi|294496608|ref|YP_003543101.1| - 0.0013 18.7 0.1 0.061 13.3 0.0 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|294496608|ref|YP_003543101.1| - 0.0014 18.7 0.1 0.64 10.1 0.0 3.1 3 0 0 3 3 3 1 AAA domain APS_kinase PF01583.20 gi|294496608|ref|YP_003543101.1| - 0.0019 18.1 0.2 2.4 8.1 0.1 2.6 2 0 0 2 2 2 1 Adenylylsulphate kinase cobW PF02492.19 gi|294496608|ref|YP_003543101.1| - 0.0024 17.5 1.9 0.27 10.8 0.1 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain dNK PF01712.19 gi|294496608|ref|YP_003543101.1| - 0.0027 17.6 0.2 0.58 10.0 0.0 2.4 2 0 0 2 2 2 1 Deoxynucleoside kinase AAA_28 PF13521.6 gi|294496608|ref|YP_003543101.1| - 0.0031 17.8 0.8 0.35 11.1 0.0 2.6 2 1 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|294496608|ref|YP_003543101.1| - 0.0031 16.7 0.3 1.2 8.3 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain AAA_15 PF13175.6 gi|294496608|ref|YP_003543101.1| - 0.0036 17.1 0.2 0.8 9.3 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain NTPase_1 PF03266.15 gi|294496608|ref|YP_003543101.1| - 0.004 17.1 0.9 2.3 8.1 0.1 2.6 3 0 0 3 3 2 1 NTPase KAP_NTPase PF07693.14 gi|294496608|ref|YP_003543101.1| - 0.0045 16.3 0.0 0.76 9.0 0.0 2.2 2 0 0 2 2 2 1 KAP family P-loop domain MMR_HSR1 PF01926.23 gi|294496608|ref|YP_003543101.1| - 0.0093 16.0 0.2 5.4 7.1 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|294496608|ref|YP_003543101.1| - 0.0093 15.3 0.1 4.1 6.6 0.1 2.5 2 0 0 2 2 2 0 Zeta toxin AAA_19 PF13245.6 gi|294496608|ref|YP_003543101.1| - 0.0096 16.3 0.1 1.5 9.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|294496608|ref|YP_003543101.1| - 0.014 15.5 1.4 2.1 8.4 0.0 2.7 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_PrkA PF08298.11 gi|294496608|ref|YP_003543101.1| - 0.015 14.3 0.1 0.072 12.0 0.0 1.9 2 0 0 2 2 2 0 PrkA AAA domain PhoH PF02562.16 gi|294496608|ref|YP_003543101.1| - 0.02 14.3 0.1 4.4 6.7 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein NACHT PF05729.12 gi|294496608|ref|YP_003543101.1| - 0.027 14.4 5.3 0.17 11.8 0.1 2.6 3 0 0 3 3 2 0 NACHT domain Dynamin_N PF00350.23 gi|294496608|ref|YP_003543101.1| - 0.033 14.2 0.7 0.79 9.8 0.1 2.7 3 0 0 3 3 2 0 Dynamin family CLP1_P PF16575.5 gi|294496608|ref|YP_003543101.1| - 0.042 13.6 0.0 7.1 6.4 0.0 2.3 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop RNA_helicase PF00910.22 gi|294496608|ref|YP_003543101.1| - 0.043 14.2 0.2 5.9 7.3 0.0 2.5 2 0 0 2 2 2 0 RNA helicase AAA_25 PF13481.6 gi|294496608|ref|YP_003543101.1| - 0.044 13.4 0.2 2.4 7.7 0.0 3.1 3 0 0 3 3 3 0 AAA domain G-alpha PF00503.20 gi|294496608|ref|YP_003543101.1| - 0.046 12.9 0.6 2.2 7.3 0.0 2.2 2 0 0 2 2 2 0 G-protein alpha subunit DLIC PF05783.11 gi|294496608|ref|YP_003543101.1| - 0.05 12.4 0.1 2.6 6.8 0.0 2.5 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) ATP-synt_ab PF00006.25 gi|294496608|ref|YP_003543101.1| - 0.066 12.9 0.1 11 5.6 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PIF1 PF05970.14 gi|294496608|ref|YP_003543101.1| - 0.067 12.4 0.4 7.4 5.6 0.0 2.8 3 0 0 3 3 3 0 PIF1-like helicase PduV-EutP PF10662.9 gi|294496608|ref|YP_003543101.1| - 0.067 12.9 1.1 1.5 8.6 0.1 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation CoaE PF01121.20 gi|294496608|ref|YP_003543101.1| - 0.081 12.6 1.0 0.86 9.3 0.2 2.4 2 0 0 2 2 2 0 Dephospho-CoA kinase AAA_7 PF12775.7 gi|294496608|ref|YP_003543101.1| - 0.1 12.1 0.2 11 5.5 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region TsaE PF02367.17 gi|294496608|ref|YP_003543101.1| - 0.11 12.5 0.8 0.97 9.4 0.0 2.3 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Cytidylate_kin PF02224.18 gi|294496608|ref|YP_003543101.1| - 0.12 12.0 0.9 4.4 7.0 0.1 2.4 2 0 0 2 2 2 0 Cytidylate kinase AAA_17 PF13207.6 gi|294496608|ref|YP_003543101.1| - 0.14 12.6 0.8 15 6.0 0.1 2.5 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|294496608|ref|YP_003543101.1| - 0.16 11.7 0.5 3.9 7.2 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein VirE PF05272.11 gi|294496608|ref|YP_003543101.1| - 0.19 11.4 0.0 7.3 6.3 0.0 2.2 2 0 0 2 2 2 0 Virulence-associated protein E Thymidylate_kin PF02223.17 gi|294496608|ref|YP_003543101.1| - 0.19 11.4 0.8 4.6 6.9 0.0 2.9 3 0 0 3 3 3 0 Thymidylate kinase Pox_A32 PF04665.12 gi|294496608|ref|YP_003543101.1| - 0.34 10.3 1.8 5.8 6.3 0.1 2.2 2 0 0 2 2 2 0 Poxvirus A32 protein DUF87 PF01935.17 gi|294496608|ref|YP_003543101.1| - 0.42 10.7 2.9 22 5.1 0.7 2.4 2 0 0 2 2 2 0 Helicase HerA, central domain PcrB PF01884.17 gi|294496609|ref|YP_003543102.1| - 1.5e-66 224.1 0.1 1.7e-66 223.9 0.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|294496609|ref|YP_003543102.1| - 3.3e-05 23.4 0.2 6.4e-05 22.5 0.1 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein Ribul_P_3_epim PF00834.19 gi|294496609|ref|YP_003543102.1| - 0.0031 16.9 0.5 0.0053 16.2 0.5 1.3 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family IMPDH PF00478.25 gi|294496609|ref|YP_003543102.1| - 0.005 15.9 0.4 0.1 11.6 0.2 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain HMGL-like PF00682.19 gi|294496609|ref|YP_003543102.1| - 0.009 15.6 0.2 0.39 10.2 0.0 2.1 2 0 0 2 2 2 1 HMGL-like ThiG PF05690.14 gi|294496609|ref|YP_003543102.1| - 0.023 14.0 8.6 1.3 8.3 0.1 2.5 2 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG Ribosomal_L40e PF01020.17 gi|294496610|ref|YP_003543103.1| - 6.6e-06 25.9 7.3 7.5e-06 25.7 7.3 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zf-ribbon_3 PF13248.6 gi|294496610|ref|YP_003543103.1| - 0.00037 19.8 2.7 0.00045 19.5 2.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|294496610|ref|YP_003543103.1| - 0.0012 18.5 2.3 0.0018 17.9 2.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|294496610|ref|YP_003543103.1| - 0.0043 17.0 0.7 0.0047 16.9 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|294496610|ref|YP_003543103.1| - 0.014 15.0 5.8 0.014 15.0 5.8 2.0 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ZPR1 PF03367.13 gi|294496610|ref|YP_003543103.1| - 0.03 14.2 2.4 0.16 11.8 0.1 1.9 1 1 1 2 2 2 0 ZPR1 zinc-finger domain RNA_POL_M_15KD PF02150.16 gi|294496610|ref|YP_003543103.1| - 0.62 10.0 5.6 2.6 8.0 5.6 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit GatB_N PF02934.15 gi|294496611|ref|YP_003543104.1| - 2.4e-100 335.5 0.0 3.4e-100 334.9 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|294496611|ref|YP_003543104.1| - 3.4e-40 137.3 0.4 5.1e-40 136.7 0.4 1.3 1 0 0 1 1 1 1 GatB domain zf-Di19 PF05605.12 gi|294496611|ref|YP_003543104.1| - 0.017 15.4 0.8 0.035 14.4 0.8 1.5 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Amidase PF01425.21 gi|294496612|ref|YP_003543105.1| - 1.5e-160 535.1 0.1 1.7e-160 534.9 0.1 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.15 gi|294496613|ref|YP_003543106.1| - 4.7e-19 68.4 0.4 6.5e-19 68.0 0.4 1.2 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit FrhB_FdhB_C PF04432.13 gi|294496614|ref|YP_003543107.1| - 4.7e-37 127.2 0.8 1.3e-36 125.7 0.0 2.0 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|294496614|ref|YP_003543107.1| - 9.4e-23 80.2 0.0 2.6e-22 78.8 0.0 1.8 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term YHS PF04945.13 gi|294496614|ref|YP_003543107.1| - 1.3e-10 41.2 3.6 3.2e-10 39.9 3.6 1.7 1 0 0 1 1 1 1 YHS domain Fer4_10 PF13237.6 gi|294496614|ref|YP_003543107.1| - 5.4e-05 23.2 14.3 9.4e-05 22.5 12.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|294496614|ref|YP_003543107.1| - 0.00053 20.5 11.7 0.019 15.5 0.1 3.3 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|294496614|ref|YP_003543107.1| - 0.00054 20.3 15.2 0.0093 16.4 1.2 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|294496614|ref|YP_003543107.1| - 0.00082 19.5 15.5 0.002 18.2 12.9 2.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|294496614|ref|YP_003543107.1| - 0.00095 19.1 13.3 0.048 13.7 3.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|294496614|ref|YP_003543107.1| - 0.0012 19.4 12.8 0.1 13.2 1.5 3.3 2 1 2 4 4 4 3 4Fe-4S dicluster domain zf-FCS PF06467.14 gi|294496614|ref|YP_003543107.1| - 0.0014 18.5 3.2 0.0014 18.5 3.2 3.0 4 0 0 4 4 3 1 MYM-type Zinc finger with FCS sequence motif Fer4_8 PF13183.6 gi|294496614|ref|YP_003543107.1| - 0.0057 17.1 14.9 0.031 14.7 0.7 3.0 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|294496614|ref|YP_003543107.1| - 0.012 16.5 14.2 0.13 13.2 0.3 3.8 5 0 0 5 5 5 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|294496614|ref|YP_003543107.1| - 0.05 14.3 4.8 4.8 8.0 0.1 3.0 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4 PF00037.27 gi|294496614|ref|YP_003543107.1| - 0.07 13.0 21.3 0.11 12.4 3.4 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain VWA_CoxE PF05762.14 gi|294496614|ref|YP_003543107.1| - 0.15 11.4 0.1 0.23 10.8 0.1 1.2 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein DUF3330 PF11809.8 gi|294496614|ref|YP_003543107.1| - 0.23 11.6 0.1 0.23 11.6 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3330) Fer4_21 PF14697.6 gi|294496614|ref|YP_003543107.1| - 0.45 10.7 14.6 0.22 11.7 11.5 2.1 2 0 0 2 2 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|294496614|ref|YP_003543107.1| - 0.97 9.7 20.4 0.65 10.2 2.4 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Radical_SAM PF04055.21 gi|294496615|ref|YP_003543108.1| - 6.8e-13 49.3 0.9 1.2e-12 48.5 0.9 1.4 1 0 0 1 1 1 1 Radical SAM superfamily LSDAT_euk PF18139.1 gi|294496615|ref|YP_003543108.1| - 0.046 13.1 0.0 0.068 12.5 0.0 1.2 1 0 0 1 1 1 0 SLOG in TRPM Aldo_ket_red PF00248.21 gi|294496615|ref|YP_003543108.1| - 0.087 12.0 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Aldo/keto reductase family DUF2975 PF11188.8 gi|294496616|ref|YP_003543109.1| - 0.027 14.4 2.3 0.031 14.1 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) LapA_dom PF06305.11 gi|294496616|ref|YP_003543109.1| - 0.031 14.1 1.8 0.031 14.1 1.8 1.7 1 1 1 2 2 2 0 Lipopolysaccharide assembly protein A domain DUF3007 PF11460.8 gi|294496616|ref|YP_003543109.1| - 0.058 13.7 1.0 0.064 13.5 1.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) PrgI PF12666.7 gi|294496616|ref|YP_003543109.1| - 0.072 13.8 1.3 0.09 13.5 1.3 1.1 1 0 0 1 1 1 0 PrgI family protein RseC_MucC PF04246.12 gi|294496616|ref|YP_003543109.1| - 0.17 11.8 1.8 0.2 11.6 1.8 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF2207 PF09972.9 gi|294496616|ref|YP_003543109.1| - 0.2 10.4 2.3 0.2 10.4 2.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) FeoB_C PF07664.12 gi|294496616|ref|YP_003543109.1| - 0.95 9.2 4.1 13 5.6 1.0 2.1 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus DUF2970 PF11174.8 gi|294496616|ref|YP_003543109.1| - 0.96 9.4 12.7 1.2 9.1 1.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2970) Mrr_cat PF04471.12 gi|294496617|ref|YP_003543110.1| - 1.3e-28 99.3 0.0 3.6e-28 97.9 0.0 1.8 2 0 0 2 2 2 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|294496617|ref|YP_003543110.1| - 5.6e-07 29.5 0.0 2.5e-06 27.4 0.0 2.0 2 0 0 2 2 2 1 Restriction endonuclease Rtt106 PF08512.12 gi|294496617|ref|YP_003543110.1| - 0.0056 17.1 0.1 0.027 14.9 0.0 2.0 2 0 0 2 2 2 1 Histone chaperone Rttp106-like bPH_3 PF14470.6 gi|294496617|ref|YP_003543110.1| - 0.0073 16.6 0.4 0.034 14.5 0.0 2.1 2 0 0 2 2 2 1 Bacterial PH domain Thioredoxin PF00085.20 gi|294496618|ref|YP_003543111.1| - 1.2e-27 95.9 0.0 1.4e-27 95.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|294496618|ref|YP_003543111.1| - 2.6e-06 27.8 0.6 0.0001 22.7 0.6 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|294496618|ref|YP_003543111.1| - 2.6e-05 24.5 0.0 0.031 14.6 0.0 2.3 1 1 1 2 2 2 2 Thioredoxin-like OST3_OST6 PF04756.13 gi|294496618|ref|YP_003543111.1| - 0.0001 21.8 0.0 0.0001 21.7 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_9 PF14595.6 gi|294496618|ref|YP_003543111.1| - 0.0046 16.7 0.0 0.0074 16.1 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin Phosducin PF02114.16 gi|294496618|ref|YP_003543111.1| - 0.0051 15.8 0.0 0.0063 15.5 0.0 1.1 1 0 0 1 1 1 1 Phosducin DUF953 PF06110.11 gi|294496618|ref|YP_003543111.1| - 0.048 13.3 0.0 0.31 10.7 0.0 2.0 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) HyaE PF07449.11 gi|294496618|ref|YP_003543111.1| - 0.063 13.2 0.0 0.13 12.2 0.0 1.5 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE Thioredoxin_3 PF13192.6 gi|294496618|ref|YP_003543111.1| - 0.07 13.2 0.0 0.27 11.3 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin domain DUF2114 PF09887.9 gi|294496619|ref|YP_003543112.1| - 1.5e-233 775.2 2.0 1.7e-233 775.0 2.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) DUF166 PF02593.14 gi|294496620|ref|YP_003543113.1| - 2.2e-59 200.7 0.0 2.5e-59 200.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function Thymidylate_kin PF02223.17 gi|294496621|ref|YP_003543114.1| - 3.8e-41 140.8 0.0 4.4e-41 140.6 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|294496621|ref|YP_003543114.1| - 3.2e-05 23.9 0.0 4.4e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Deoxynucleoside kinase AAA_28 PF13521.6 gi|294496621|ref|YP_003543114.1| - 7.5e-05 23.0 0.0 9.4e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|294496621|ref|YP_003543114.1| - 0.00046 20.7 0.0 0.0015 19.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain Ploopntkinase1 PF18748.1 gi|294496621|ref|YP_003543114.1| - 0.0017 17.9 0.0 0.42 10.1 0.0 2.5 2 1 0 2 2 2 2 P-loop Nucleotide Kinase1 AAA_33 PF13671.6 gi|294496621|ref|YP_003543114.1| - 0.005 17.0 0.0 0.01 16.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|294496621|ref|YP_003543114.1| - 0.008 16.2 0.1 0.86 9.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|294496621|ref|YP_003543114.1| - 0.045 14.1 0.0 0.078 13.3 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.6 gi|294496621|ref|YP_003543114.1| - 0.048 14.1 0.1 4.4 7.7 0.0 2.8 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|294496621|ref|YP_003543114.1| - 0.052 14.1 0.1 0.12 12.9 0.1 1.9 1 1 0 1 1 1 0 ABC transporter Arf PF00025.21 gi|294496621|ref|YP_003543114.1| - 0.059 12.8 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 ADP-ribosylation factor family G-alpha PF00503.20 gi|294496621|ref|YP_003543114.1| - 0.085 12.0 0.0 0.087 12.0 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_22 PF13401.6 gi|294496621|ref|YP_003543114.1| - 0.095 13.0 0.1 0.75 10.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain Adenyl_transf PF04439.12 gi|294496621|ref|YP_003543114.1| - 0.097 11.8 0.1 0.14 11.3 0.1 1.3 1 0 0 1 1 1 0 Streptomycin adenylyltransferase His_biosynth PF00977.21 gi|294496623|ref|YP_003543116.1| - 5.1e-34 117.7 0.1 6.3e-34 117.4 0.1 1.1 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|294496623|ref|YP_003543116.1| - 0.0042 16.6 0.1 2.4 7.5 0.0 2.1 2 0 0 2 2 2 2 PcrB family ThiG PF05690.14 gi|294496623|ref|YP_003543116.1| - 0.008 15.5 0.3 0.56 9.5 0.2 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG 4HFCP_synth PF04476.13 gi|294496624|ref|YP_003543117.1| - 1.2e-88 296.7 0.2 1.4e-88 296.5 0.2 1.0 1 0 0 1 1 1 1 4-HFC-P synthase QRPTase_C PF01729.19 gi|294496624|ref|YP_003543117.1| - 1.4e-07 31.4 0.0 2.3e-06 27.5 0.0 2.1 1 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain PIN_5 PF08745.11 gi|294496625|ref|YP_003543118.1| - 1.7e-94 315.1 0.1 1.9e-94 314.9 0.1 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease Phage_RpbA PF10789.9 gi|294496625|ref|YP_003543118.1| - 0.11 12.6 0.7 0.81 9.8 0.2 2.3 1 1 1 2 2 2 0 Phage RNA polymerase binding, RpbA DUF5615 PF18480.1 gi|294496625|ref|YP_003543118.1| - 0.13 12.0 0.0 0.3 10.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) UbiA PF01040.18 gi|294496626|ref|YP_003543119.1| - 1.3e-41 142.6 18.7 1.7e-41 142.2 18.7 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF5368 PF17336.2 gi|294496626|ref|YP_003543119.1| - 0.12 12.5 0.1 0.12 12.5 0.1 3.4 3 1 1 4 4 4 0 Family of unknown function (DUF5368) NadA PF02445.16 gi|294496627|ref|YP_003543120.1| - 6.1e-120 399.9 3.6 6.9e-120 399.7 3.6 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein DUF108 PF01958.18 gi|294496628|ref|YP_003543121.1| - 1.9e-37 127.5 0.7 3.5e-37 126.7 0.7 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|294496628|ref|YP_003543121.1| - 2.3e-24 86.3 0.3 4e-24 85.5 0.1 1.5 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|294496628|ref|YP_003543121.1| - 1.5e-06 28.4 0.1 3e-06 27.4 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.17 gi|294496628|ref|YP_003543121.1| - 2.2e-05 25.0 0.1 4.3e-05 24.0 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|294496628|ref|YP_003543121.1| - 2.4e-05 25.1 0.1 4.9e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|294496628|ref|YP_003543121.1| - 0.00046 20.4 0.7 0.00099 19.4 0.7 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Semialdhyde_dh PF01118.24 gi|294496628|ref|YP_003543121.1| - 0.00054 20.4 0.1 0.00084 19.8 0.1 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 gi|294496628|ref|YP_003543121.1| - 0.02 14.9 0.1 0.16 11.9 0.0 2.0 2 0 0 2 2 2 0 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 gi|294496628|ref|YP_003543121.1| - 0.031 13.6 0.1 0.2 11.0 0.0 2.0 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|294496628|ref|YP_003543121.1| - 0.071 13.3 0.1 0.11 12.7 0.1 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Gp_dh_N PF00044.24 gi|294496628|ref|YP_003543121.1| - 0.12 12.7 0.8 1 9.7 0.6 2.7 2 1 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain QRPTase_C PF01729.19 gi|294496629|ref|YP_003543122.1| - 6.2e-54 182.3 1.7 6.2e-54 182.3 1.7 1.5 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|294496629|ref|YP_003543122.1| - 8.3e-23 80.3 0.0 2.2e-22 78.9 0.0 1.8 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.19 gi|294496629|ref|YP_003543122.1| - 0.00089 18.7 0.0 0.0017 17.8 0.0 1.5 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.17 gi|294496629|ref|YP_003543122.1| - 0.074 12.4 0.2 0.15 11.4 0.2 1.6 1 1 0 1 1 1 0 Thiamine monophosphate synthase Sensor PF13796.6 gi|294496630|ref|YP_003543123.1| - 0.12 12.4 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Putative sensor Ocular_alb PF02101.15 gi|294496631|ref|YP_003543124.1| - 0.36 9.7 5.8 0.091 11.7 2.5 1.5 1 1 1 2 2 2 0 Ocular albinism type 1 protein MHYT PF03707.16 gi|294496631|ref|YP_003543124.1| - 0.38 11.0 3.1 5.3 7.3 0.0 2.5 2 1 0 2 2 2 0 Bacterial signalling protein N terminal repeat AIPR PF10592.9 gi|294496633|ref|YP_003543126.1| - 1.7e-53 182.2 11.1 1.7e-53 182.2 11.1 1.8 2 0 0 2 2 2 1 AIPR protein DUF11 PF01345.18 gi|294496634|ref|YP_003543127.1| - 1.8e-14 53.8 0.1 5.7e-07 29.7 0.2 2.7 1 1 1 2 2 2 2 Domain of unknown function DUF11 BatD PF13584.6 gi|294496634|ref|YP_003543127.1| - 4.8e-10 38.8 4.7 2.9e-07 29.7 3.2 2.8 1 1 2 3 3 3 3 Oxygen tolerance NPCBM_assoc PF10633.9 gi|294496634|ref|YP_003543127.1| - 2.2e-08 34.2 0.1 0.0075 16.5 0.0 3.4 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.14 gi|294496634|ref|YP_003543127.1| - 1.1e-07 31.5 2.4 0.0031 16.9 0.1 2.4 1 1 1 2 2 2 2 Translocon-associated protein beta (TRAPB) CARDB PF07705.11 gi|294496634|ref|YP_003543127.1| - 1.6e-06 28.3 2.6 0.0031 17.7 0.3 2.7 2 0 0 2 2 2 2 CARDB bMG10 PF17973.1 gi|294496634|ref|YP_003543127.1| - 0.0078 16.4 3.1 3.5 7.8 0.0 3.8 2 2 1 3 3 3 1 Bacterial Alpha-2-macroglobulin MG10 domain Cadherin PF00028.17 gi|294496634|ref|YP_003543127.1| - 0.087 13.3 0.6 1.7 9.1 0.0 3.2 3 1 0 3 3 3 0 Cadherin domain Alpha_adaptinC2 PF02883.20 gi|294496634|ref|YP_003543127.1| - 0.12 12.7 0.1 3.2 8.1 0.1 2.4 2 0 0 2 2 2 0 Adaptin C-terminal domain AglB_L1 PF18079.1 gi|294496634|ref|YP_003543127.1| - 0.73 10.2 4.7 0.38 11.1 0.6 2.6 3 0 0 3 3 3 0 Archaeal glycosylation protein B long peripheral domain BsuPI PF12690.7 gi|294496634|ref|YP_003543127.1| - 1.3 9.0 4.2 16 5.6 0.4 3.7 4 1 0 4 4 4 0 Intracellular proteinase inhibitor Tubulin PF00091.25 gi|294496635|ref|YP_003543128.1| - 4.6e-34 118.3 0.1 9e-34 117.4 0.1 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|294496635|ref|YP_003543128.1| - 3.9e-07 29.6 0.0 3.8e-06 26.3 0.0 2.2 1 1 1 2 2 2 2 Tubulin like SLIDE PF09111.10 gi|294496635|ref|YP_003543128.1| - 0.24 11.5 0.0 0.24 11.5 0.0 2.2 3 0 0 3 3 3 0 SLIDE ABC_tran PF00005.27 gi|294496636|ref|YP_003543129.1| - 1e-34 120.0 0.1 1.7e-34 119.3 0.0 1.4 2 0 0 2 2 1 1 ABC transporter SMC_N PF02463.19 gi|294496636|ref|YP_003543129.1| - 1.5e-09 37.6 0.2 2.1e-07 30.6 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|294496636|ref|YP_003543129.1| - 6e-05 22.7 0.3 0.00012 21.7 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|294496636|ref|YP_003543129.1| - 0.00011 22.6 0.0 0.00016 22.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|294496636|ref|YP_003543129.1| - 0.00015 21.7 1.0 0.094 12.5 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system NACHT PF05729.12 gi|294496636|ref|YP_003543129.1| - 0.0011 18.9 0.7 0.54 10.2 0.1 3.0 2 1 1 3 3 3 1 NACHT domain AAA_22 PF13401.6 gi|294496636|ref|YP_003543129.1| - 0.0017 18.6 0.5 0.011 16.1 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|294496636|ref|YP_003543129.1| - 0.0026 17.5 0.0 0.006 16.3 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.6 gi|294496636|ref|YP_003543129.1| - 0.0042 16.7 0.1 0.72 9.4 0.1 2.4 3 0 0 3 3 3 1 AAA domain AAA_23 PF13476.6 gi|294496636|ref|YP_003543129.1| - 0.009 16.5 0.2 0.026 15.0 0.0 1.7 3 0 0 3 3 2 1 AAA domain RsgA_GTPase PF03193.16 gi|294496636|ref|YP_003543129.1| - 0.012 15.6 0.5 0.027 14.4 0.1 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_33 PF13671.6 gi|294496636|ref|YP_003543129.1| - 0.045 13.9 0.6 0.14 12.3 0.6 1.9 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|294496636|ref|YP_003543129.1| - 0.051 13.3 0.1 0.77 9.5 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein Rad17 PF03215.15 gi|294496636|ref|YP_003543129.1| - 0.054 13.4 0.0 0.13 12.2 0.0 1.6 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_13 PF13166.6 gi|294496636|ref|YP_003543129.1| - 0.078 11.6 0.0 0.66 8.6 0.0 1.9 1 1 1 2 2 2 0 AAA domain Herpes_LP PF03363.13 gi|294496636|ref|YP_003543129.1| - 0.09 12.6 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus leader protein NB-ARC PF00931.22 gi|294496636|ref|YP_003543129.1| - 0.11 11.7 0.1 0.22 10.7 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain cobW PF02492.19 gi|294496636|ref|YP_003543129.1| - 0.11 12.0 0.1 0.32 10.6 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain G-alpha PF00503.20 gi|294496636|ref|YP_003543129.1| - 0.12 11.6 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit DUF296 PF03479.15 gi|294496637|ref|YP_003543130.1| - 8.1e-17 61.5 0.0 9.5e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain TrmB PF01978.19 gi|294496638|ref|YP_003543131.1| - 0.0016 18.3 0.0 0.0024 17.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_37 PF13744.6 gi|294496638|ref|YP_003543131.1| - 0.015 15.2 0.0 0.046 13.7 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|294496638|ref|YP_003543131.1| - 0.016 15.1 0.0 0.037 13.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Replic_Relax PF13814.6 gi|294496638|ref|YP_003543131.1| - 0.089 12.8 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Replication-relaxation PadR PF03551.14 gi|294496638|ref|YP_003543131.1| - 0.1 12.6 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MarR_2 PF12802.7 gi|294496638|ref|YP_003543131.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.6 1 1 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|294496638|ref|YP_003543131.1| - 0.11 12.6 0.0 0.2 11.8 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain Enolase_C PF00113.22 gi|294496639|ref|YP_003543132.1| - 3.6e-113 377.7 1.2 5e-113 377.2 1.2 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|294496639|ref|YP_003543132.1| - 1.9e-58 196.3 0.0 6.4e-58 194.6 0.1 1.9 2 0 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|294496639|ref|YP_003543132.1| - 5.1e-05 22.9 0.0 8.9e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MacB_PCD PF12704.7 gi|294496640|ref|YP_003543133.1| - 4.1e-17 63.2 0.2 4.1e-17 63.2 0.2 1.7 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|294496640|ref|YP_003543133.1| - 2.4e-15 56.8 3.7 2.4e-15 56.8 3.7 2.7 3 0 0 3 3 3 1 FtsX-like permease family DUF3537 PF12056.8 gi|294496640|ref|YP_003543133.1| - 0.059 12.2 0.5 0.16 10.8 0.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3537) DUF1372 PF07116.11 gi|294496640|ref|YP_003543133.1| - 0.1 12.8 0.9 1.3 9.2 0.3 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1372) DNA_pol_B PF00136.21 gi|294496641|ref|YP_003543134.1| - 5.2e-116 388.1 0.1 6.5e-116 387.7 0.1 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|294496641|ref|YP_003543134.1| - 4.2e-60 203.7 0.0 6e-60 203.2 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|294496641|ref|YP_003543134.1| - 0.00036 20.3 0.0 0.00077 19.2 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB EF1_GNE PF00736.19 gi|294496641|ref|YP_003543134.1| - 0.018 15.2 0.2 0.093 12.9 0.0 2.2 2 0 0 2 2 2 0 EF-1 guanine nucleotide exchange domain DNA_pol_B_2 PF03175.13 gi|294496641|ref|YP_003543134.1| - 0.082 11.8 0.1 0.42 9.4 0.0 1.8 1 1 1 2 2 2 0 DNA polymerase type B, organellar and viral peroxidase PF00141.23 gi|294496642|ref|YP_003543135.1| - 4.5e-89 298.1 0.0 8.9e-47 159.7 0.0 2.2 2 0 0 2 2 2 2 Peroxidase GST_C_3 PF14497.6 gi|294496642|ref|YP_003543135.1| - 0.033 14.4 0.0 5.8 7.2 0.0 2.8 2 0 0 2 2 2 0 Glutathione S-transferase, C-terminal domain PAS_9 PF13426.7 gi|294496643|ref|YP_003543136.1| - 2.2e-34 117.9 1.3 1.2e-16 60.8 0.1 3.5 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|294496643|ref|YP_003543136.1| - 1.9e-33 114.8 0.0 1.2e-16 60.8 0.0 2.5 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|294496643|ref|YP_003543136.1| - 3.4e-31 108.0 0.3 8.9e-31 106.7 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|294496643|ref|YP_003543136.1| - 4.8e-29 100.5 0.1 5.8e-10 39.3 0.1 3.5 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|294496643|ref|YP_003543136.1| - 1.2e-27 96.3 0.0 2.9e-12 46.8 0.0 3.2 3 0 0 3 3 3 2 PAS fold HisKA PF00512.25 gi|294496643|ref|YP_003543136.1| - 2.5e-18 65.9 0.1 6e-18 64.6 0.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|294496643|ref|YP_003543136.1| - 1.1e-10 41.3 0.0 3.4e-05 23.8 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_10 PF13596.6 gi|294496643|ref|YP_003543136.1| - 8.4e-08 32.8 0.0 0.009 16.6 0.0 3.2 3 0 0 3 3 3 2 PAS domain PAS_12 PF18095.1 gi|294496643|ref|YP_003543136.1| - 0.00052 19.7 0.2 0.14 11.7 0.1 2.6 2 0 0 2 2 2 1 UPF0242 C-terminal PAS-like domain HATPase_c_5 PF14501.6 gi|294496643|ref|YP_003543136.1| - 0.0021 17.9 0.0 0.0065 16.3 0.0 1.9 1 0 0 1 1 1 1 GHKL domain Snf7 PF03357.21 gi|294496643|ref|YP_003543136.1| - 0.0041 16.7 2.6 1.9 8.1 0.2 3.3 3 0 0 3 3 3 1 Snf7 DUF2111 PF09884.9 gi|294496643|ref|YP_003543136.1| - 0.045 13.8 0.0 1.5 9.0 0.0 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2111) SDF PF00375.18 gi|294496644|ref|YP_003543137.1| - 5.5e-119 397.7 42.5 6.2e-119 397.5 42.5 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family NTP_transf_2 PF01909.23 gi|294496645|ref|YP_003543138.1| - 7.6e-14 51.8 1.0 8.7e-14 51.6 1.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|294496645|ref|YP_003543138.1| - 1.2e-10 41.3 0.4 1.5e-10 41.0 0.4 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|294496646|ref|YP_003543139.1| - 1.2e-26 92.9 0.0 1.5e-26 92.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 Efg1 PF10153.9 gi|294496647|ref|YP_003543140.1| - 0.05 14.0 0.1 0.062 13.7 0.1 1.2 1 0 0 1 1 1 0 rRNA-processing protein Efg1 Tnp_P_element_C PF12596.8 gi|294496647|ref|YP_003543140.1| - 0.055 14.0 0.2 0.1 13.1 0.2 1.6 1 1 0 1 1 1 0 87kDa Transposase HicA_toxin PF07927.12 gi|294496649|ref|YP_003543142.1| - 1.3e-06 28.4 0.1 1.5e-06 28.1 0.1 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, OrfB_Zn_ribbon PF07282.11 gi|294496650|ref|YP_003543143.1| - 8e-22 77.0 1.3 2.4e-21 75.4 1.3 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|294496650|ref|YP_003543143.1| - 4.1e-11 43.2 0.0 1e-10 41.9 0.0 1.8 1 0 0 1 1 1 1 Probable transposase C1_2 PF03107.16 gi|294496650|ref|YP_003543143.1| - 0.079 13.3 1.5 0.19 12.1 1.5 1.6 1 0 0 1 1 1 0 C1 domain zn-ribbon_14 PF16503.5 gi|294496650|ref|YP_003543143.1| - 0.22 11.1 2.5 5 6.7 0.5 2.4 2 0 0 2 2 2 0 Zinc-ribbon Retrotran_gag_3 PF14244.6 gi|294496650|ref|YP_003543143.1| - 0.31 10.9 1.8 1.3 8.9 0.1 2.8 3 0 0 3 3 3 0 gag-polypeptide of LTR copia-type S-layer PF07752.11 gi|294496652|ref|YP_003543145.1| - 2.1e-161 534.9 41.5 3.9e-81 271.9 17.4 2.0 2 0 0 2 2 2 2 S-layer protein PGF-CTERM PF18204.1 gi|294496652|ref|YP_003543145.1| - 7.3e-11 41.7 1.7 1.3e-10 40.8 1.7 1.5 1 0 0 1 1 1 1 PGF-CTERM motif CBM_2 PF00553.19 gi|294496652|ref|YP_003543145.1| - 0.00049 20.4 1.3 1.3 9.4 0.2 2.6 2 0 0 2 2 2 2 Cellulose binding domain PorP_SprF PF11751.8 gi|294496652|ref|YP_003543145.1| - 0.0021 17.6 0.8 2.1 7.8 0.1 2.5 2 2 0 2 2 2 2 Type IX secretion system membrane protein PorP/SprF adh_short PF00106.25 gi|294496652|ref|YP_003543145.1| - 0.0079 15.7 1.4 2.7 7.4 0.1 2.3 2 0 0 2 2 2 2 short chain dehydrogenase GluRS_N PF18466.1 gi|294496652|ref|YP_003543145.1| - 0.024 15.0 1.1 5.1 7.6 0.1 2.8 2 0 0 2 2 2 0 Glutamate--tRNA ligase N-terminal domain FAP PF07174.11 gi|294496652|ref|YP_003543145.1| - 0.35 10.3 5.1 0.57 9.6 5.1 1.2 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) DUF3575 PF12099.8 gi|294496652|ref|YP_003543145.1| - 0.48 9.7 2.2 14 5.0 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3575) Amelogenin PF02948.15 gi|294496652|ref|YP_003543145.1| - 1.6 9.3 8.8 2.8 8.6 8.8 1.3 1 0 0 1 1 1 0 Amelogenin ATPase PF06745.13 gi|294496653|ref|YP_003543146.1| - 9.1e-72 241.1 0.5 1e-71 241.0 0.5 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|294496653|ref|YP_003543146.1| - 0.0092 15.6 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|294496653|ref|YP_003543146.1| - 0.077 12.3 0.0 0.14 11.4 0.0 1.6 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain E1-E2_ATPase PF00122.20 gi|294496654|ref|YP_003543147.1| - 1.1e-55 188.0 1.4 1.1e-55 188.0 1.4 3.0 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|294496654|ref|YP_003543147.1| - 8.3e-37 126.7 9.4 8.3e-37 126.7 9.4 2.0 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|294496654|ref|YP_003543147.1| - 2e-24 87.1 6.7 3.3e-23 83.1 6.7 2.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|294496654|ref|YP_003543147.1| - 3.7e-22 78.2 0.0 6.8e-22 77.4 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Cation_ATPase_N PF00690.26 gi|294496654|ref|YP_003543147.1| - 5.1e-12 45.3 0.0 1.7e-11 43.6 0.0 2.0 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|294496654|ref|YP_003543147.1| - 9.2e-06 25.6 0.4 0.0022 17.8 0.5 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|294496654|ref|YP_003543147.1| - 0.0072 16.7 0.2 0.057 13.8 0.2 2.4 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Na_H_Exchanger PF00999.21 gi|294496655|ref|YP_003543148.1| - 1.8e-58 198.2 53.0 2.1e-58 197.9 53.0 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CBS PF00571.28 gi|294496656|ref|YP_003543149.1| - 3.9e-26 91.3 0.8 4.3e-12 46.3 0.1 2.2 2 0 0 2 2 2 2 CBS domain ABC_tran PF00005.27 gi|294496657|ref|YP_003543150.1| - 1.4e-30 106.6 0.0 2.6e-30 105.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|294496657|ref|YP_003543150.1| - 6.9e-09 35.9 2.7 0.00015 21.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|294496657|ref|YP_003543150.1| - 1.3e-07 31.3 0.0 2.2e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|294496657|ref|YP_003543150.1| - 0.0013 18.4 0.4 0.0033 17.1 0.4 1.7 1 1 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|294496657|ref|YP_003543150.1| - 0.0069 16.1 0.3 0.025 14.3 0.1 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|294496657|ref|YP_003543150.1| - 0.044 14.3 0.0 0.071 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|294496657|ref|YP_003543150.1| - 0.068 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase POR PF01558.18 gi|294496657|ref|YP_003543150.1| - 0.079 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase BCA_ABC_TP_C PF12399.8 gi|294496657|ref|YP_003543150.1| - 0.09 12.7 0.1 0.2 11.6 0.1 1.6 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter MMR_HSR1 PF01926.23 gi|294496657|ref|YP_003543150.1| - 0.11 12.6 0.1 0.57 10.3 0.0 2.2 2 0 0 2 2 2 0 50S ribosome-binding GTPase BDHCT_assoc PF16204.5 gi|294496657|ref|YP_003543150.1| - 0.14 11.8 0.0 0.21 11.3 0.0 1.1 1 0 0 1 1 1 0 BDHCT-box associated domain on Bloom syndrome protein ABC_ATPase PF09818.9 gi|294496657|ref|YP_003543150.1| - 0.18 10.5 0.0 0.29 9.9 0.0 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class CbiQ PF02361.16 gi|294496658|ref|YP_003543151.1| - 1.3e-39 136.0 8.2 1.9e-39 135.5 8.2 1.1 1 0 0 1 1 1 1 Cobalt transport protein CbiN PF02553.15 gi|294496659|ref|YP_003543152.1| - 2.2e-25 88.4 0.5 3e-25 88.0 0.5 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiM PF01891.16 gi|294496660|ref|YP_003543153.1| - 1e-53 182.2 22.0 1.2e-53 182.1 22.0 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region ECF_trnsprt PF12822.7 gi|294496660|ref|YP_003543153.1| - 0.0036 17.4 24.5 0.0036 17.4 24.5 1.6 2 0 0 2 2 2 1 ECF transporter, substrate-specific component DUF981 PF06168.11 gi|294496660|ref|YP_003543153.1| - 0.055 13.4 15.9 0.09 12.7 15.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF981) UCR_UQCRX_QCR9 PF05365.12 gi|294496660|ref|YP_003543153.1| - 0.32 11.0 2.4 1.6 8.7 1.5 2.5 2 0 0 2 2 2 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like TP_methylase PF00590.20 gi|294496661|ref|YP_003543154.1| - 3.3e-21 76.2 0.3 1.8e-20 73.8 0.3 1.9 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiD PF01888.17 gi|294496662|ref|YP_003543155.1| - 8.9e-52 175.9 1.9 1.4e-51 175.2 1.9 1.3 1 0 0 1 1 1 1 CbiD sCache_like PF16736.5 gi|294496662|ref|YP_003543155.1| - 0.083 13.0 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Single Cache-like MutL_C PF08676.11 gi|294496663|ref|YP_003543156.1| - 6.1e-39 133.1 0.0 1.2e-38 132.2 0.0 1.5 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|294496663|ref|YP_003543156.1| - 1.5e-36 124.6 0.0 2.5e-36 123.9 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|294496663|ref|YP_003543156.1| - 1.1e-11 44.7 0.1 2.1e-11 43.8 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|294496663|ref|YP_003543156.1| - 3.1e-08 34.1 0.1 6.4e-08 33.1 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MutS_V PF00488.21 gi|294496664|ref|YP_003543157.1| - 4.9e-85 284.3 1.0 1.1e-84 283.2 0.3 1.8 2 0 0 2 2 2 1 MutS domain V MutS_III PF05192.18 gi|294496664|ref|YP_003543157.1| - 3.1e-44 151.5 0.8 5.5e-44 150.7 0.3 1.7 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.20 gi|294496664|ref|YP_003543157.1| - 7.6e-44 148.6 0.0 1.8e-43 147.3 0.0 1.7 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|294496664|ref|YP_003543157.1| - 9.2e-31 106.1 0.2 2.3e-30 104.8 0.2 1.7 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|294496664|ref|YP_003543157.1| - 1.8e-21 76.9 0.0 4.4e-21 75.6 0.0 1.7 1 0 0 1 1 1 1 MutS domain II AAA_27 PF13514.6 gi|294496664|ref|YP_003543157.1| - 0.0053 16.4 0.0 0.017 14.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|294496664|ref|YP_003543157.1| - 0.02 14.6 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|294496664|ref|YP_003543157.1| - 0.095 12.7 0.0 0.41 10.7 0.0 2.1 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|294496664|ref|YP_003543157.1| - 0.13 12.7 0.0 0.62 10.6 0.0 2.2 2 1 1 3 3 3 0 ABC transporter ABC2_membrane PF01061.24 gi|294496665|ref|YP_003543158.1| - 2.4e-19 69.6 22.6 2.4e-19 69.6 22.6 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|294496665|ref|YP_003543158.1| - 2e-07 30.5 31.3 2.4e-07 30.2 31.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|294496666|ref|YP_003543159.1| - 1.8e-30 106.3 0.0 2.8e-30 105.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|294496666|ref|YP_003543159.1| - 9.4e-14 51.9 0.1 9.7e-08 32.2 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|294496666|ref|YP_003543159.1| - 8e-06 25.8 0.0 0.016 14.9 0.0 2.2 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|294496666|ref|YP_003543159.1| - 0.00027 21.5 0.5 0.00066 20.2 0.5 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|294496666|ref|YP_003543159.1| - 0.00089 18.8 0.1 0.018 14.5 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF3398 PF11878.8 gi|294496666|ref|YP_003543159.1| - 0.027 14.9 0.1 0.063 13.7 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3398) DUF4162 PF13732.6 gi|294496666|ref|YP_003543159.1| - 0.079 13.7 0.0 0.23 12.2 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4162) AAA_22 PF13401.6 gi|294496666|ref|YP_003543159.1| - 0.087 13.1 0.4 9.2 6.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|294496666|ref|YP_003543159.1| - 0.18 11.5 0.0 0.37 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain TrkH PF02386.16 gi|294496667|ref|YP_003543160.1| - 8.4e-69 232.3 21.3 3.5e-68 230.3 21.3 1.7 1 1 0 1 1 1 1 Cation transport protein VIT1 PF01988.19 gi|294496667|ref|YP_003543160.1| - 2.8 7.8 11.0 6.9 6.5 3.8 2.8 2 1 0 2 2 2 0 VIT family DHBP_synthase PF00926.19 gi|294496668|ref|YP_003543161.1| - 2.6e-61 206.5 0.1 3.1e-61 206.3 0.1 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase PEP-utilizers PF00391.23 gi|294496668|ref|YP_003543161.1| - 0.02 14.6 0.3 5.8 6.7 0.1 2.7 2 1 1 3 3 3 0 PEP-utilising enzyme, mobile domain CTP-dep_RFKase PF01982.16 gi|294496669|ref|YP_003543162.1| - 4.8e-46 155.8 0.0 7.8e-46 155.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_Crp_2 PF13545.6 gi|294496669|ref|YP_003543162.1| - 0.00012 21.9 0.0 0.00024 21.0 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|294496669|ref|YP_003543162.1| - 0.00043 20.2 0.0 0.00078 19.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|294496669|ref|YP_003543162.1| - 0.0036 17.2 0.0 0.0061 16.4 0.0 1.3 1 0 0 1 1 1 1 MarR family MazE_antitoxin PF04014.18 gi|294496669|ref|YP_003543162.1| - 0.018 14.9 0.8 0.04 13.9 0.1 1.9 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin HTH_36 PF13730.6 gi|294496669|ref|YP_003543162.1| - 0.11 12.4 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Ribosomal_S8 PF00410.19 gi|294496669|ref|YP_003543162.1| - 0.11 12.4 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S8 Rrf2 PF02082.20 gi|294496669|ref|YP_003543162.1| - 0.14 12.5 0.0 0.23 11.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Ion_trans PF00520.31 gi|294496670|ref|YP_003543163.1| - 1.8e-31 109.3 14.9 2.1e-31 109.0 14.9 1.1 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|294496670|ref|YP_003543163.1| - 1.6e-14 53.6 8.2 1.6e-14 53.6 8.2 2.4 2 1 1 3 3 3 1 Ion channel PKD_channel PF08016.12 gi|294496670|ref|YP_003543163.1| - 0.03 13.0 12.2 0.03 13.0 4.9 2.1 1 1 1 2 2 2 0 Polycystin cation channel DZR PF12773.7 gi|294496670|ref|YP_003543163.1| - 0.032 14.2 0.7 0.051 13.6 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon MqsA_antitoxin PF15731.5 gi|294496670|ref|YP_003543163.1| - 0.16 12.1 0.2 0.28 11.3 0.2 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA E1-E2_ATPase PF00122.20 gi|294496671|ref|YP_003543164.1| - 9e-49 165.4 0.1 9e-49 165.4 0.1 2.4 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|294496671|ref|YP_003543164.1| - 1.9e-43 149.2 2.6 3e-43 148.6 2.6 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|294496671|ref|YP_003543164.1| - 3e-06 27.8 0.0 7.8e-06 26.4 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|294496671|ref|YP_003543164.1| - 4.1e-06 26.7 0.0 0.0038 17.0 0.0 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|294496671|ref|YP_003543164.1| - 0.011 15.9 0.0 0.022 14.8 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase FTR_C PF02741.15 gi|294496672|ref|YP_003543165.1| - 3.4e-66 221.9 1.5 3.4e-66 221.9 1.5 1.7 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.18 gi|294496672|ref|YP_003543165.1| - 3.5e-62 208.6 0.0 7.2e-62 207.5 0.0 1.5 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase bPH_2 PF03703.14 gi|294496673|ref|YP_003543166.1| - 1.3e-17 63.7 0.2 1.8e-17 63.3 0.2 1.2 1 0 0 1 1 1 1 Bacterial PH domain bPH_4 PF06713.11 gi|294496673|ref|YP_003543166.1| - 0.062 13.4 0.0 0.096 12.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial PH domain bPH_2 PF03703.14 gi|294496674|ref|YP_003543167.1| - 2.3e-34 117.4 1.0 7.1e-13 48.6 0.1 3.2 3 0 0 3 3 3 3 Bacterial PH domain DUF1345 PF07077.11 gi|294496674|ref|YP_003543167.1| - 0.00021 21.0 0.7 0.0033 17.1 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1345) Chordopox_L2 PF05803.12 gi|294496674|ref|YP_003543167.1| - 0.0021 17.8 5.1 0.004 16.9 0.7 2.6 2 0 0 2 2 2 1 Chordopoxvirus L2 protein bPH_4 PF06713.11 gi|294496674|ref|YP_003543167.1| - 0.015 15.3 0.4 2.2 8.4 0.1 2.6 2 0 0 2 2 2 0 Bacterial PH domain TraE PF05309.11 gi|294496674|ref|YP_003543167.1| - 1.7 8.0 5.6 8.1 5.8 0.1 2.5 2 0 0 2 2 2 0 TraE protein TraB PF01963.17 gi|294496675|ref|YP_003543168.1| - 2.8e-30 106.1 0.0 4.6e-30 105.4 0.0 1.3 1 0 0 1 1 1 1 TraB family CBS PF00571.28 gi|294496676|ref|YP_003543169.1| - 2.2e-24 85.7 4.7 1.5e-13 51.0 0.6 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|294496676|ref|YP_003543169.1| - 8.1e-16 58.0 10.9 8.5e-09 35.0 0.7 3.1 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|294496676|ref|YP_003543169.1| - 0.00021 21.0 1.3 0.00021 21.0 1.3 2.4 2 1 0 2 2 2 1 Peptidase M50B-like DUF3267 PF11667.8 gi|294496676|ref|YP_003543169.1| - 6.9 7.0 14.8 0.17 12.2 2.3 3.0 3 0 0 3 3 3 0 Putative zincin peptidase Pyridoxal_deC PF00282.19 gi|294496677|ref|YP_003543170.1| - 5.1e-31 107.7 0.0 1.7e-30 106.0 0.0 1.7 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|294496677|ref|YP_003543170.1| - 8.5e-07 28.3 0.0 1.9e-06 27.1 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|294496677|ref|YP_003543170.1| - 1.5e-06 27.7 0.0 1.5e-05 24.4 0.0 2.2 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|294496677|ref|YP_003543170.1| - 5.7e-06 25.8 0.0 9.3e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanohalophilus_mahii_DSM_5219_uid47313/NC_014002.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanohalophilus_mahii_DSM_5219_uid47313/NC_014002.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanohalophilus_mahii_DSM_5219_uid47313/NC_014002.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanohalophilus_mahii_DSM_5219_uid47313/NC_014002.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:00:48 2019 # [ok]