#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Cdc6_C	PF09079.11	gi|298676128|ref|YP_003727877.1|	-	2.7e-18	65.7	0.1	5.9e-18	64.6	0.1	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_16	PF13191.6	gi|298676128|ref|YP_003727877.1|	-	3.5e-11	43.8	0.0	2.6e-10	41.0	0.0	2.3	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|298676128|ref|YP_003727877.1|	-	4.4e-10	40.0	0.0	8.7e-10	39.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|298676128|ref|YP_003727877.1|	-	6.2e-07	29.9	0.0	1.7e-06	28.5	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|298676128|ref|YP_003727877.1|	-	1e-06	28.9	0.2	2.2e-06	27.8	0.2	1.6	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
TniB	PF05621.11	gi|298676128|ref|YP_003727877.1|	-	8.2e-06	25.4	0.0	1.5e-05	24.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
DUF815	PF05673.13	gi|298676128|ref|YP_003727877.1|	-	1.2e-05	24.6	0.0	2.4e-05	23.6	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
NACHT	PF05729.12	gi|298676128|ref|YP_003727877.1|	-	0.00026	21.0	0.0	0.00041	20.3	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
AAA_32	PF13654.6	gi|298676128|ref|YP_003727877.1|	-	0.0022	16.9	0.3	0.41	9.4	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_7	PF12775.7	gi|298676128|ref|YP_003727877.1|	-	0.003	17.1	0.0	0.0088	15.6	0.0	1.8	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
RNA_helicase	PF00910.22	gi|298676128|ref|YP_003727877.1|	-	0.0043	17.4	0.2	0.019	15.3	0.2	2.2	1	1	0	1	1	1	1	RNA	helicase
Kinesin	PF00225.23	gi|298676128|ref|YP_003727877.1|	-	0.006	15.6	0.0	0.036	13.0	0.0	2.1	2	0	0	2	2	2	1	Kinesin	motor	domain
AAA_assoc_2	PF16193.5	gi|298676128|ref|YP_003727877.1|	-	0.0061	16.9	0.0	0.017	15.5	0.0	1.7	1	0	0	1	1	1	1	AAA	C-terminal	domain
ResIII	PF04851.15	gi|298676128|ref|YP_003727877.1|	-	0.0069	16.4	0.2	0.048	13.7	0.0	2.3	2	1	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
Sigma54_activat	PF00158.26	gi|298676128|ref|YP_003727877.1|	-	0.0077	15.9	0.0	0.02	14.6	0.0	1.7	1	0	0	1	1	1	1	Sigma-54	interaction	domain
PIF1	PF05970.14	gi|298676128|ref|YP_003727877.1|	-	0.0088	15.3	0.0	0.02	14.1	0.0	1.7	1	1	1	2	2	2	1	PIF1-like	helicase
AAA_5	PF07728.14	gi|298676128|ref|YP_003727877.1|	-	0.013	15.5	0.1	0.67	10.0	0.0	2.7	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
DUF2075	PF09848.9	gi|298676128|ref|YP_003727877.1|	-	0.019	14.2	0.0	0.023	13.9	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Zeta_toxin	PF06414.12	gi|298676128|ref|YP_003727877.1|	-	0.019	14.2	0.0	0.036	13.4	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_2	PF07724.14	gi|298676128|ref|YP_003727877.1|	-	0.061	13.4	0.0	0.17	12.0	0.0	1.7	2	0	0	2	2	1	0	AAA	domain	(Cdc48	subfamily)
TsaE	PF02367.17	gi|298676128|ref|YP_003727877.1|	-	0.063	13.3	0.0	0.12	12.4	0.0	1.6	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_19	PF13245.6	gi|298676128|ref|YP_003727877.1|	-	0.083	13.2	0.0	0.19	12.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|298676128|ref|YP_003727877.1|	-	0.09	12.5	0.0	0.17	11.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_11	PF13086.6	gi|298676128|ref|YP_003727877.1|	-	0.097	12.4	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF772	PF05598.11	gi|298676129|ref|YP_003727878.1|	-	3.8e-21	74.9	0.1	8.1e-21	73.8	0.1	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|298676129|ref|YP_003727878.1|	-	2.1e-12	47.1	1.8	5.4e-12	45.8	1.8	1.7	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_4	PF13359.6	gi|298676129|ref|YP_003727878.1|	-	0.00017	21.3	0.1	0.00047	19.9	0.1	1.7	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1_3	PF13612.6	gi|298676129|ref|YP_003727878.1|	-	0.0011	19.0	0.2	0.0033	17.4	0.1	1.8	2	0	0	2	2	2	1	Transposase	DDE	domain
SdrD_B	PF17210.3	gi|298676130|ref|YP_003727879.1|	-	1.5e-257	836.8	109.3	2.2e-37	127.7	4.0	8.2	8	0	0	8	8	8	8	SdrD	B-like	domain
CarboxypepD_reg	PF13620.6	gi|298676130|ref|YP_003727879.1|	-	1.4e-72	239.9	44.7	1.8e-09	37.8	1.2	8.7	8	0	0	8	8	8	8	Carboxypeptidase	regulatory-like	domain
bMG3	PF11974.8	gi|298676130|ref|YP_003727879.1|	-	1e-27	96.2	0.0	0.0034	17.4	0.0	8.3	8	0	0	8	8	8	7	Bacterial	alpha-2-macroglobulin	MG3	domain
CarbopepD_reg_2	PF13715.6	gi|298676130|ref|YP_003727879.1|	-	1.7e-25	88.8	40.0	0.0048	16.9	0.2	8.5	8	0	0	8	8	8	8	CarboxypepD_reg-like	domain
SpaA	PF17802.1	gi|298676130|ref|YP_003727879.1|	-	2e-16	60.1	69.5	1.6e-05	25.1	0.6	10.2	6	4	2	8	8	8	6	Prealbumin-like	fold	domain
UDP-g_GGTase	PF06427.11	gi|298676130|ref|YP_003727879.1|	-	1.4e-12	47.6	4.4	0.088	12.9	0.0	6.7	7	0	0	7	7	7	4	UDP-glucose:Glycoprotein	Glucosyltransferase
TTR-52	PF01060.23	gi|298676130|ref|YP_003727879.1|	-	1.4e-12	48.1	10.4	3.6	8.4	0.0	8.7	8	0	0	8	8	8	1	Transthyretin-like	family
AdenylateSensor	PF16579.5	gi|298676130|ref|YP_003727879.1|	-	2.7e-11	43.9	7.7	0.7	10.4	0.1	5.9	6	0	0	6	6	5	4	Adenylate	sensor	of	SNF1-like	protein	kinase
DUF2012	PF09430.10	gi|298676130|ref|YP_003727879.1|	-	3.5e-11	43.3	14.0	3.6	7.7	0.0	8.3	8	0	0	8	8	8	3	Protein	of	unknown	function	(DUF2012)
phage_tail_N	PF08400.10	gi|298676130|ref|YP_003727879.1|	-	3.6e-06	27.0	35.3	0.18	11.8	0.3	8.1	8	1	1	9	9	8	4	Prophage	tail	fibre	N-terminal
DUF2025	PF09634.10	gi|298676130|ref|YP_003727879.1|	-	0.00028	20.8	3.4	14	5.8	0.0	5.5	5	0	0	5	5	5	0	Protein	of	unknown	function	(DUF2025)
Dioxygenase_C	PF00775.21	gi|298676130|ref|YP_003727879.1|	-	0.00062	19.3	17.5	1	8.7	0.0	7.1	8	0	0	8	8	8	1	Dioxygenase
MetallophosN	PF16371.5	gi|298676130|ref|YP_003727879.1|	-	0.0025	18.0	40.8	0.098	12.9	0.1	9.3	8	2	1	9	9	9	1	N	terminal	of	Calcineurin-like	phosphoesterase
HupF_HypC	PF01455.18	gi|298676130|ref|YP_003727879.1|	-	0.0026	17.9	0.6	1.6e+02	2.6	0.0	5.8	6	0	0	6	6	6	0	HupF/HypC	family
Big_1	PF02369.16	gi|298676130|ref|YP_003727879.1|	-	0.0031	17.5	42.6	0.56	10.3	0.1	10.3	9	2	2	11	11	11	4	Bacterial	Ig-like	domain	(group	1)
DUF3244	PF11589.8	gi|298676130|ref|YP_003727879.1|	-	0.03	14.4	18.9	6.9	6.8	0.0	8.0	8	0	0	8	8	8	0	Domain	of	unknown	function	(DUF3244)
PEGA	PF08308.11	gi|298676130|ref|YP_003727879.1|	-	0.033	14.1	10.6	50	3.9	0.0	6.4	6	0	0	6	6	6	0	PEGA	domain
PLRV_ORF5	PF01690.17	gi|298676130|ref|YP_003727879.1|	-	0.035	12.9	38.2	0.57	8.9	1.2	5.9	6	0	0	6	6	6	0	Potato	leaf	roll	virus	readthrough	protein
CooC_C	PF15976.5	gi|298676130|ref|YP_003727879.1|	-	0.05	13.6	7.5	25	5.0	0.0	5.7	6	0	0	6	6	5	0	CS1-pili	formation	C-terminal
Glyco_hydro_42C	PF08533.10	gi|298676130|ref|YP_003727879.1|	-	0.084	12.6	0.4	5.6	6.8	0.1	3.1	2	0	0	2	2	2	0	Beta-galactosidase	C-terminal	domain
EMP24_GP25L	PF01105.24	gi|298676130|ref|YP_003727879.1|	-	0.66	9.9	28.2	7	6.6	0.1	7.2	4	2	3	8	8	8	0	emp24/gp25L/p24	family/GOLD
SdrD_B	PF17210.3	gi|298676131|ref|YP_003727880.1|	-	7.2e-131	428.8	48.6	5.9e-34	116.7	8.7	4.8	5	0	0	5	5	5	4	SdrD	B-like	domain
CarboxypepD_reg	PF13620.6	gi|298676131|ref|YP_003727880.1|	-	1.4e-33	115.0	20.7	1.5e-09	38.0	0.9	5.8	5	3	1	6	6	6	4	Carboxypeptidase	regulatory-like	domain
bMG3	PF11974.8	gi|298676131|ref|YP_003727880.1|	-	4.1e-13	49.3	0.0	0.062	13.3	0.0	4.5	4	0	0	4	4	4	4	Bacterial	alpha-2-macroglobulin	MG3	domain
CarbopepD_reg_2	PF13715.6	gi|298676131|ref|YP_003727880.1|	-	2.4e-12	46.7	9.2	0.0015	18.5	0.4	4.7	4	0	0	4	4	4	3	CarboxypepD_reg-like	domain
TTR-52	PF01060.23	gi|298676131|ref|YP_003727880.1|	-	2.6e-06	28.0	0.5	24	5.7	0.0	5.1	5	0	0	5	5	5	0	Transthyretin-like	family
UDP-g_GGTase	PF06427.11	gi|298676131|ref|YP_003727880.1|	-	4.7e-06	26.7	0.3	0.55	10.4	0.0	4.1	4	0	0	4	4	4	2	UDP-glucose:Glycoprotein	Glucosyltransferase
DUF1416	PF07210.12	gi|298676131|ref|YP_003727880.1|	-	2e-05	24.4	0.3	0.15	11.9	0.0	3.8	4	0	0	4	4	4	1	Protein	of	unknown	function	(DUF1416)
AdenylateSensor	PF16579.5	gi|298676131|ref|YP_003727880.1|	-	4.3e-05	24.0	0.1	0.18	12.3	0.0	2.7	2	0	0	2	2	2	2	Adenylate	sensor	of	SNF1-like	protein	kinase
CARDB	PF07705.11	gi|298676131|ref|YP_003727880.1|	-	0.00084	19.6	5.7	3.7	7.9	2.0	4.4	3	2	0	3	3	3	1	CARDB
Big_1	PF02369.16	gi|298676131|ref|YP_003727880.1|	-	0.0025	17.8	18.2	1.8	8.7	0.1	6.8	5	2	2	7	7	7	2	Bacterial	Ig-like	domain	(group	1)
phage_tail_N	PF08400.10	gi|298676131|ref|YP_003727880.1|	-	0.012	15.6	7.5	7.1	6.6	0.3	4.4	3	1	2	5	5	5	0	Prophage	tail	fibre	N-terminal
DUF11	PF01345.18	gi|298676131|ref|YP_003727880.1|	-	0.026	14.8	8.9	0.59	10.5	8.9	3.1	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF11
PLRV_ORF5	PF01690.17	gi|298676131|ref|YP_003727880.1|	-	0.03	13.1	13.8	0.41	9.3	0.8	3.3	3	1	0	3	3	3	0	Potato	leaf	roll	virus	readthrough	protein
SpaA	PF17802.1	gi|298676131|ref|YP_003727880.1|	-	0.079	13.3	38.8	0.54	10.6	6.6	6.7	4	3	0	4	4	4	0	Prealbumin-like	fold	domain
Tgi2PP	PF18250.1	gi|298676131|ref|YP_003727880.1|	-	0.094	13.0	3.0	46	4.3	0.1	4.2	3	0	0	3	3	3	0	Effector	immunity	protein	Tgi2PP
Dioxygenase_C	PF00775.21	gi|298676131|ref|YP_003727880.1|	-	0.16	11.4	0.9	3.5	7.0	0.0	3.1	3	0	0	3	3	3	0	Dioxygenase
PAS	PF00989.25	gi|298676132|ref|YP_003727881.1|	-	8.2e-37	125.7	0.0	2e-12	47.1	0.0	5.0	4	1	0	4	4	4	4	PAS	fold
PAS_9	PF13426.7	gi|298676132|ref|YP_003727881.1|	-	1.6e-36	124.7	0.2	5.6e-10	39.4	0.0	5.1	4	0	0	4	4	4	4	PAS	domain
HATPase_c	PF02518.26	gi|298676132|ref|YP_003727881.1|	-	1.3e-34	119.1	0.2	4.3e-34	117.4	0.1	2.0	2	0	0	2	2	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|298676132|ref|YP_003727881.1|	-	2.7e-33	114.5	0.0	2.5e-11	43.8	0.0	4.9	5	1	0	5	5	5	4	PAS	fold
PAS_8	PF13188.7	gi|298676132|ref|YP_003727881.1|	-	2.3e-28	97.7	0.6	2.6e-06	27.3	0.0	4.7	4	0	0	4	4	4	4	PAS	domain
HisKA	PF00512.25	gi|298676132|ref|YP_003727881.1|	-	3.2e-24	84.7	0.7	2.2e-22	78.9	0.2	2.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_3	PF08447.12	gi|298676132|ref|YP_003727881.1|	-	3.3e-17	62.5	0.1	4.5e-05	23.7	0.0	5.3	4	1	0	4	4	4	2	PAS	fold
PAS_12	PF18095.1	gi|298676132|ref|YP_003727881.1|	-	0.00029	20.5	0.0	1.1	8.8	0.0	4.0	4	0	0	4	4	4	1	UPF0242	C-terminal	PAS-like	domain
PAS_7	PF12860.7	gi|298676132|ref|YP_003727881.1|	-	0.00044	20.4	0.1	0.071	13.3	0.0	4.0	5	1	0	5	5	5	1	PAS	fold
GAF_2	PF13185.6	gi|298676132|ref|YP_003727881.1|	-	0.00056	20.2	0.0	0.0018	18.6	0.0	1.9	1	0	0	1	1	1	1	GAF	domain
HATPase_c_5	PF14501.6	gi|298676132|ref|YP_003727881.1|	-	0.0017	18.2	0.0	0.0049	16.7	0.0	1.8	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_3	PF13589.6	gi|298676132|ref|YP_003727881.1|	-	0.006	16.4	0.0	0.013	15.3	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_10	PF13596.6	gi|298676132|ref|YP_003727881.1|	-	0.0087	16.6	0.1	0.92	10.1	0.0	3.7	3	0	0	3	3	3	1	PAS	domain
HATPase_c_2	PF13581.6	gi|298676132|ref|YP_003727881.1|	-	0.011	15.6	0.0	0.033	14.2	0.0	1.8	2	0	0	2	2	2	0	Histidine	kinase-like	ATPase	domain
Synaptobrevin	PF00957.21	gi|298676132|ref|YP_003727881.1|	-	3.4	7.5	5.6	3.3	7.5	0.1	2.8	2	0	0	2	2	2	0	Synaptobrevin
VWA	PF00092.28	gi|298676133|ref|YP_003727882.1|	-	1.7e-17	64.2	1.6	3.6e-17	63.2	1.6	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
DUF1194	PF06707.11	gi|298676133|ref|YP_003727882.1|	-	5.8e-17	61.6	0.0	1e-16	60.8	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1194)
VWA_2	PF13519.6	gi|298676133|ref|YP_003727882.1|	-	4.4e-09	37.0	0.5	7.6e-09	36.2	0.5	1.4	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
CARDB	PF07705.11	gi|298676133|ref|YP_003727882.1|	-	1.2e-05	25.5	27.4	0.033	14.4	1.4	4.3	4	0	0	4	4	4	3	CARDB
DUF11	PF01345.18	gi|298676133|ref|YP_003727882.1|	-	0.00022	21.5	14.8	0.23	11.8	1.0	4.2	3	1	0	3	3	3	3	Domain	of	unknown	function	DUF11
DUF2393	PF09624.10	gi|298676133|ref|YP_003727882.1|	-	0.0012	18.8	2.9	0.38	10.7	0.1	3.3	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF2393)
DUF1573	PF07610.11	gi|298676133|ref|YP_003727882.1|	-	0.003	17.5	8.9	0.22	11.6	0.8	3.8	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF1573)
Glucodextran_N	PF09137.11	gi|298676133|ref|YP_003727882.1|	-	0.0054	16.3	0.5	0.085	12.4	0.1	2.3	2	0	0	2	2	2	1	Glucodextranase,	domain	N
TRAP_beta	PF05753.14	gi|298676133|ref|YP_003727882.1|	-	0.0074	15.7	10.6	0.12	11.8	0.1	3.8	3	1	0	3	3	3	1	Translocon-associated	protein	beta	(TRAPB)
Integrin_alpha2	PF08441.12	gi|298676133|ref|YP_003727882.1|	-	0.053	12.4	0.5	1.6	7.5	0.1	2.4	2	0	0	2	2	2	0	Integrin	alpha
NPCBM_assoc	PF10633.9	gi|298676133|ref|YP_003727882.1|	-	0.19	12.0	5.7	26	5.1	0.1	4.6	5	0	0	5	5	5	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
Ecm33	PF12454.8	gi|298676133|ref|YP_003727882.1|	-	0.82	9.9	3.4	0.55	10.4	1.1	1.9	2	0	0	2	2	2	0	GPI-anchored	cell	wall	organization	protein
OrfB_IS605	PF01385.19	gi|298676134|ref|YP_003727883.1|	-	4.1e-22	78.7	0.2	1.6e-21	76.7	0.0	2.1	2	1	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|298676134|ref|YP_003727883.1|	-	4.9e-10	39.2	0.3	1.8e-09	37.4	0.1	2.1	2	1	0	2	2	2	1	Putative	transposase	DNA-binding	domain
RuvX	PF03652.15	gi|298676134|ref|YP_003727883.1|	-	0.0046	17.3	0.0	0.011	16.1	0.0	1.6	1	0	0	1	1	1	1	Holliday	junction	resolvase
DUF919	PF06034.11	gi|298676134|ref|YP_003727883.1|	-	0.0055	16.5	0.4	0.015	15.1	0.4	1.7	1	0	0	1	1	1	1	Nucleopolyhedrovirus	protein	of	unknown	function	(DUF919)
Prenyltransf	PF01255.19	gi|298676135|ref|YP_003727884.1|	-	1.2e-69	234.3	0.1	1.5e-69	234.0	0.1	1.1	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
PD40	PF07676.12	gi|298676136|ref|YP_003727885.1|	-	1.3e-39	133.3	20.6	7.8e-10	38.4	0.3	8.7	9	0	0	9	9	9	7	WD40-like	Beta	Propeller	Repeat
CARDB	PF07705.11	gi|298676136|ref|YP_003727885.1|	-	6e-18	65.0	12.6	7.7e-17	61.4	1.6	3.5	3	0	0	3	3	3	2	CARDB
CarboxypepD_reg	PF13620.6	gi|298676136|ref|YP_003727885.1|	-	5.6e-11	42.6	0.6	2.1e-08	34.3	0.0	3.5	3	0	0	3	3	3	1	Carboxypeptidase	regulatory-like	domain
CarbopepD_reg_2	PF13715.6	gi|298676136|ref|YP_003727885.1|	-	5.9e-08	32.6	6.7	6.1e-07	29.3	0.3	3.4	3	0	0	3	3	3	1	CarboxypepD_reg-like	domain
DPPIV_N	PF00930.21	gi|298676136|ref|YP_003727885.1|	-	7.4e-08	31.5	23.0	0.017	13.9	0.3	6.8	2	1	4	6	6	6	4	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Pectate_lyase22	PF14583.6	gi|298676136|ref|YP_003727885.1|	-	1.5e-06	27.2	4.4	0.03	13.0	0.0	3.9	1	1	3	4	4	4	3	Oligogalacturonate	lyase
SdrD_B	PF17210.3	gi|298676136|ref|YP_003727885.1|	-	5.1e-06	26.7	0.2	5.1e-06	26.7	0.2	4.5	4	1	1	5	5	5	1	SdrD	B-like	domain
DUF2012	PF09430.10	gi|298676136|ref|YP_003727885.1|	-	2e-05	24.7	0.0	8e-05	22.7	0.0	2.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2012)
SpaA	PF17802.1	gi|298676136|ref|YP_003727885.1|	-	0.42	11.0	4.2	0.77	10.1	0.5	3.2	2	0	0	2	2	2	0	Prealbumin-like	fold	domain
Glyco_hydro_30C	PF17189.4	gi|298676136|ref|YP_003727885.1|	-	9.2	6.6	14.0	1.5	9.1	0.5	5.1	4	2	1	5	5	5	0	Glycosyl	hydrolase	family	30	beta	sandwich	domain
TrmB	PF01978.19	gi|298676137|ref|YP_003727886.1|	-	4.9e-09	36.0	0.1	0.0051	16.7	0.0	3.1	3	0	0	3	3	3	2	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|298676137|ref|YP_003727886.1|	-	1.1e-05	25.2	1.3	0.015	15.2	0.0	3.4	3	1	1	4	4	4	2	MarR	family
HTH_11	PF08279.12	gi|298676137|ref|YP_003727886.1|	-	0.00048	20.0	0.1	0.7	9.9	0.0	2.8	2	0	0	2	2	2	2	HTH	domain
Aph-1	PF06105.12	gi|298676137|ref|YP_003727886.1|	-	0.00064	19.2	0.0	0.0012	18.3	0.0	1.5	1	1	0	1	1	1	1	Aph-1	protein
HTH_36	PF13730.6	gi|298676137|ref|YP_003727886.1|	-	0.00069	19.5	0.1	0.4	10.7	0.0	2.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|298676137|ref|YP_003727886.1|	-	0.00075	19.3	0.0	0.082	12.8	0.0	2.5	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|298676137|ref|YP_003727886.1|	-	0.0072	16.2	0.8	1.3	9.0	0.0	2.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
DUF1441	PF07278.11	gi|298676137|ref|YP_003727886.1|	-	0.0076	16.2	0.2	0.017	15.0	0.1	1.6	2	0	0	2	2	1	1	Protein	of	unknown	function	(DUF1441)
RPA_C	PF08784.11	gi|298676137|ref|YP_003727886.1|	-	0.018	15.7	0.2	5.5	7.7	0.1	2.5	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
BPL_LplA_LipB	PF03099.19	gi|298676137|ref|YP_003727886.1|	-	0.022	14.7	0.0	0.045	13.7	0.0	1.5	1	0	0	1	1	1	0	Biotin/lipoate	A/B	protein	ligase	family
HTH_43	PF09904.9	gi|298676137|ref|YP_003727886.1|	-	0.035	14.0	0.0	0.14	12.2	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_27	PF13463.6	gi|298676137|ref|YP_003727886.1|	-	0.045	14.2	0.0	4.9	7.7	0.0	2.6	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|298676137|ref|YP_003727886.1|	-	0.053	13.3	0.0	1.6	8.6	0.0	2.4	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_40	PF14493.6	gi|298676137|ref|YP_003727886.1|	-	0.065	13.7	0.1	13	6.3	0.0	2.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|298676137|ref|YP_003727886.1|	-	0.11	12.9	0.9	1.7	9.0	0.1	2.7	2	1	1	3	3	3	0	Transcriptional	regulator
HTH_Crp_2	PF13545.6	gi|298676137|ref|YP_003727886.1|	-	0.13	12.2	0.1	1.1	9.3	0.0	2.3	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|298676137|ref|YP_003727886.1|	-	0.18	11.4	3.1	16	5.1	0.0	3.8	3	1	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|298676138|ref|YP_003727887.1|	-	0.00011	22.1	0.1	0.0002	21.1	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
AhpC-TSA	PF00578.21	gi|298676138|ref|YP_003727887.1|	-	0.01	15.7	0.2	0.11	12.4	0.1	2.4	2	1	1	3	3	3	0	AhpC/TSA	family
PCI	PF01399.27	gi|298676138|ref|YP_003727887.1|	-	0.018	15.5	0.4	0.073	13.6	0.1	2.0	2	0	0	2	2	2	0	PCI	domain
PG_binding_2	PF08823.11	gi|298676138|ref|YP_003727887.1|	-	0.062	13.6	0.0	0.14	12.5	0.0	1.6	1	0	0	1	1	1	0	Putative	peptidoglycan	binding	domain
Dimerisation2	PF16864.5	gi|298676138|ref|YP_003727887.1|	-	0.11	12.5	0.0	0.29	11.2	0.0	1.7	1	0	0	1	1	1	0	Dimerisation	domain
NTP_transferase	PF00483.23	gi|298676139|ref|YP_003727888.1|	-	1.9e-47	162.0	0.0	2.8e-47	161.4	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.24	gi|298676139|ref|YP_003727888.1|	-	2.8e-15	55.4	28.7	1.3e-08	34.2	3.0	5.1	3	1	3	6	6	6	4	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.7	gi|298676139|ref|YP_003727888.1|	-	2.1e-12	47.7	0.0	2.9e-12	47.2	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep_2	PF14602.6	gi|298676139|ref|YP_003727888.1|	-	1.6e-06	27.7	16.8	0.00013	21.6	2.7	4.5	5	0	0	5	5	5	2	Hexapeptide	repeat	of	succinyl-transferase
IspD	PF01128.19	gi|298676139|ref|YP_003727888.1|	-	0.00012	21.9	0.0	0.00031	20.6	0.0	1.7	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DUF4954	PF16314.5	gi|298676139|ref|YP_003727888.1|	-	0.0039	15.4	4.4	0.0081	14.3	4.4	1.5	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4954)
Fucokinase	PF07959.12	gi|298676139|ref|YP_003727888.1|	-	0.16	10.9	0.0	0.36	9.7	0.0	1.7	2	0	0	2	2	2	0	L-fucokinase
PGM_PMM_I	PF02878.16	gi|298676140|ref|YP_003727889.1|	-	7.2e-35	119.7	0.0	1.3e-34	118.9	0.0	1.3	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|298676140|ref|YP_003727889.1|	-	1.8e-28	99.1	0.1	4.2e-28	98.0	0.1	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.16	gi|298676140|ref|YP_003727889.1|	-	4.1e-20	72.1	0.0	7.6e-20	71.2	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.20	gi|298676140|ref|YP_003727889.1|	-	5.2e-12	45.8	0.0	1.2e-11	44.6	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
CinA_KH	PF18146.1	gi|298676140|ref|YP_003727889.1|	-	0.045	13.9	0.1	7.8	6.7	0.0	3.0	2	0	0	2	2	2	0	Damage-inducible	protein	CinA	KH	domain
DUF2957	PF11170.8	gi|298676140|ref|YP_003727889.1|	-	0.1	11.4	0.0	0.17	10.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2957)
SIS	PF01380.22	gi|298676141|ref|YP_003727890.1|	-	2.5e-60	202.0	3.7	2.8e-30	104.8	0.1	3.6	4	0	0	4	4	4	2	SIS	domain
GATase_6	PF13522.6	gi|298676141|ref|YP_003727890.1|	-	6.4e-22	78.2	0.0	1.2e-21	77.3	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|298676141|ref|YP_003727890.1|	-	1.2e-15	57.6	0.0	3.2e-15	56.1	0.0	1.8	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
SIS_2	PF13580.6	gi|298676141|ref|YP_003727890.1|	-	0.00079	19.4	0.1	0.072	13.1	0.0	2.6	2	0	0	2	2	2	1	SIS	domain
GATase_4	PF13230.6	gi|298676141|ref|YP_003727890.1|	-	0.0057	15.6	0.0	0.0095	14.9	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
DUF5124	PF17160.4	gi|298676141|ref|YP_003727890.1|	-	0.1	13.4	0.0	0.26	12.1	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5124)
NTP_transferase	PF00483.23	gi|298676142|ref|YP_003727891.1|	-	5.3e-45	153.9	0.2	8.2e-45	153.3	0.2	1.3	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.24	gi|298676142|ref|YP_003727891.1|	-	1.6e-22	78.3	20.6	2.3e-08	33.4	0.3	4.7	3	1	1	4	4	4	4	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.7	gi|298676142|ref|YP_003727891.1|	-	2.6e-15	57.1	0.0	3.7e-15	56.7	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep_2	PF14602.6	gi|298676142|ref|YP_003727891.1|	-	5.4e-09	35.6	21.0	4.7e-07	29.4	0.7	4.8	4	0	0	4	4	4	3	Hexapeptide	repeat	of	succinyl-transferase
IspD	PF01128.19	gi|298676142|ref|YP_003727891.1|	-	8.2e-06	25.7	0.1	2e-05	24.5	0.1	1.7	1	1	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.26	gi|298676142|ref|YP_003727891.1|	-	1.6e-05	24.8	0.1	2.7e-05	24.0	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
CTP_transf_3	PF02348.19	gi|298676142|ref|YP_003727891.1|	-	0.00015	21.8	0.9	0.00026	21.0	0.9	1.3	1	0	0	1	1	1	1	Cytidylyltransferase
Glyco_tranf_2_3	PF13641.6	gi|298676142|ref|YP_003727891.1|	-	0.0011	19.0	0.1	0.0021	18.0	0.1	1.4	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
DapH_N	PF08503.10	gi|298676142|ref|YP_003727891.1|	-	0.075	13.3	1.0	0.5	10.6	0.1	2.9	3	0	0	3	3	3	0	Tetrahydrodipicolinate	succinyltransferase	N-terminal
OrfB_Zn_ribbon	PF07282.11	gi|298676143|ref|YP_003727892.1|	-	7.1e-25	86.7	3.4	1.4e-24	85.7	1.0	2.5	2	1	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|298676143|ref|YP_003727892.1|	-	6.4e-10	39.3	1.6	6.4e-10	39.3	1.6	1.7	2	0	0	2	2	2	1	Probable	transposase
HypA	PF01155.19	gi|298676143|ref|YP_003727892.1|	-	0.058	13.4	0.1	0.14	12.2	0.1	1.6	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
UPF0547	PF10571.9	gi|298676143|ref|YP_003727892.1|	-	0.13	12.4	1.6	0.88	9.7	0.1	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DNA_RNApol_7kD	PF03604.13	gi|298676143|ref|YP_003727892.1|	-	0.88	9.3	6.7	3.4	7.4	6.7	2.0	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn_Tnp_IS1595	PF12760.7	gi|298676143|ref|YP_003727892.1|	-	1	9.4	4.8	2.7	8.1	4.8	1.7	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
DUF2387	PF09526.10	gi|298676143|ref|YP_003727892.1|	-	1.8	8.8	5.8	13	6.0	1.9	3.0	2	1	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
Rubredoxin_2	PF18073.1	gi|298676143|ref|YP_003727892.1|	-	2.2	8.1	4.5	21	4.9	0.4	2.4	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
DUF2207	PF09972.9	gi|298676144|ref|YP_003727893.1|	-	0.0099	14.7	0.4	0.013	14.3	0.4	1.1	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2207)
DsbD_2	PF13386.6	gi|298676144|ref|YP_003727893.1|	-	0.013	15.5	0.3	0.014	15.3	0.3	1.0	1	0	0	1	1	1	0	Cytochrome	C	biogenesis	protein	transmembrane	region
TraQ	PF09679.10	gi|298676144|ref|YP_003727893.1|	-	0.11	12.4	0.4	0.15	12.0	0.4	1.2	1	0	0	1	1	1	0	Type-F	conjugative	transfer	system	pilin	chaperone	(TraQ)
DUF3188	PF11384.8	gi|298676144|ref|YP_003727893.1|	-	7.4	6.4	6.8	61	3.4	6.5	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3188)
Epimerase	PF01370.21	gi|298676145|ref|YP_003727894.1|	-	1.2e-56	191.9	0.0	1.5e-56	191.6	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|298676145|ref|YP_003727894.1|	-	3.1e-49	168.2	0.1	7.8e-49	166.8	0.1	1.6	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|298676145|ref|YP_003727894.1|	-	1.7e-22	79.9	0.6	4.7e-21	75.2	0.6	2.6	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
3Beta_HSD	PF01073.19	gi|298676145|ref|YP_003727894.1|	-	1.2e-21	77.0	0.0	1.7e-21	76.5	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|298676145|ref|YP_003727894.1|	-	1.7e-11	43.8	0.0	2.2e-11	43.4	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|298676145|ref|YP_003727894.1|	-	6.9e-09	35.3	0.0	2e-05	23.9	0.0	2.4	2	1	0	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|298676145|ref|YP_003727894.1|	-	4e-06	26.8	0.0	4.6e-05	23.4	0.0	2.4	1	1	1	2	2	2	1	NAD(P)H-binding
adh_short	PF00106.25	gi|298676145|ref|YP_003727894.1|	-	0.0003	20.3	0.0	0.0028	17.2	0.0	2.3	1	1	1	2	2	2	1	short	chain	dehydrogenase
NmrA	PF05368.13	gi|298676145|ref|YP_003727894.1|	-	0.00031	20.4	0.2	0.00084	19.0	0.0	1.8	2	0	0	2	2	2	1	NmrA-like	family
3HCDH_N	PF02737.18	gi|298676145|ref|YP_003727894.1|	-	0.0042	17.0	0.0	0.0085	16.0	0.0	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|298676145|ref|YP_003727894.1|	-	0.08	13.5	0.0	0.27	11.8	0.0	1.9	2	0	0	2	2	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
KR	PF08659.10	gi|298676145|ref|YP_003727894.1|	-	0.098	12.6	0.0	1	9.2	0.0	2.3	2	0	0	2	2	2	0	KR	domain
Glycos_transf_2	PF00535.26	gi|298676146|ref|YP_003727895.1|	-	4.6e-24	85.1	0.2	7.8e-24	84.4	0.2	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|298676146|ref|YP_003727895.1|	-	8.1e-05	22.6	0.1	0.00012	22.1	0.1	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|298676146|ref|YP_003727895.1|	-	0.0041	17.6	0.0	0.011	16.2	0.0	1.8	1	1	1	2	2	2	1	Glycosyl	transferase	family	2
DUF373	PF04123.13	gi|298676146|ref|YP_003727895.1|	-	3.6	7.0	6.1	1	8.7	0.8	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF373)
Glycos_transf_2	PF00535.26	gi|298676147|ref|YP_003727896.1|	-	6.1e-27	94.5	0.1	9.3e-27	93.9	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|298676147|ref|YP_003727896.1|	-	4.6e-16	59.4	0.0	6.8e-16	58.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|298676147|ref|YP_003727896.1|	-	8.5e-12	45.1	2.6	7.3e-11	42.0	2.6	2.0	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|298676147|ref|YP_003727896.1|	-	2.5e-09	37.3	0.1	3.8e-09	36.8	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_4	PF13704.6	gi|298676147|ref|YP_003727896.1|	-	4.2e-05	24.0	0.3	0.00097	19.6	0.0	2.4	2	1	0	2	2	2	1	Glycosyl	transferase	family	2
Anp1	PF03452.14	gi|298676147|ref|YP_003727896.1|	-	0.029	13.8	0.1	0.054	12.9	0.0	1.4	2	0	0	2	2	2	0	Anp1
DUF2207	PF09972.9	gi|298676147|ref|YP_003727896.1|	-	0.32	9.7	3.2	0.43	9.3	3.2	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
AMP-binding	PF00501.28	gi|298676148|ref|YP_003727897.1|	-	0.0015	17.2	0.0	0.0021	16.8	0.0	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
RNaseH_like	PF04308.12	gi|298676148|ref|YP_003727897.1|	-	0.025	14.5	0.1	0.051	13.5	0.1	1.5	1	0	0	1	1	1	0	Ribonuclease	H-like
Glycos_transf_1	PF00534.20	gi|298676149|ref|YP_003727898.1|	-	1.4e-33	115.9	0.6	2.5e-33	115.0	0.6	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|298676149|ref|YP_003727898.1|	-	6.4e-29	101.1	0.0	1.9e-28	99.6	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|298676149|ref|YP_003727898.1|	-	8.1e-10	39.0	0.1	1.7e-09	37.9	0.1	1.6	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|298676149|ref|YP_003727898.1|	-	9.9e-08	32.3	0.0	2.2e-07	31.2	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|298676149|ref|YP_003727898.1|	-	0.0022	18.5	0.0	0.0032	17.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glycos_transf_1	PF00534.20	gi|298676150|ref|YP_003727899.1|	-	1.3e-36	125.7	0.2	2.8e-35	121.4	0.2	2.4	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|298676150|ref|YP_003727899.1|	-	3.6e-24	85.7	0.0	6.4e-24	84.9	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|298676150|ref|YP_003727899.1|	-	2.2e-12	47.3	0.0	3.2e-12	46.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|298676150|ref|YP_003727899.1|	-	0.0013	19.1	0.0	0.0051	17.2	0.0	2.0	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
DUF4649	PF15507.6	gi|298676150|ref|YP_003727899.1|	-	0.02	14.9	0.1	0.052	13.5	0.1	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4649)
DUF1359	PF07097.11	gi|298676150|ref|YP_003727899.1|	-	0.038	14.2	0.6	0.14	12.4	0.6	2.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1359)
Glyco_trans_4_4	PF13579.6	gi|298676150|ref|YP_003727899.1|	-	0.12	12.8	0.0	0.17	12.3	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	transferase	4-like	domain
Tmemb_9	PF05434.11	gi|298676151|ref|YP_003727900.1|	-	9.9	6.1	5.8	0.9	9.4	0.3	2.1	2	0	0	2	2	2	0	TMEM9
Glycos_transf_2	PF00535.26	gi|298676152|ref|YP_003727901.1|	-	1.5e-41	142.0	0.1	2.4e-41	141.4	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|298676152|ref|YP_003727901.1|	-	1.2e-19	71.1	0.0	1.9e-19	70.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|298676152|ref|YP_003727901.1|	-	2.6e-19	69.8	2.8	3.4e-19	69.4	2.8	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|298676152|ref|YP_003727901.1|	-	0.014	15.8	0.1	0.035	14.6	0.1	1.7	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
TPR_2	PF07719.17	gi|298676152|ref|YP_003727901.1|	-	0.039	14.1	0.0	0.082	13.1	0.0	1.6	1	0	0	1	1	1	0	Tetratricopeptide	repeat
NTP_transferase	PF00483.23	gi|298676152|ref|YP_003727901.1|	-	0.04	13.5	0.0	0.063	12.8	0.0	1.2	1	0	0	1	1	1	0	Nucleotidyl	transferase
TPR_1	PF00515.28	gi|298676152|ref|YP_003727901.1|	-	0.041	13.7	0.0	0.094	12.6	0.0	1.6	1	0	0	1	1	1	0	Tetratricopeptide	repeat
Peptidase_S24	PF00717.23	gi|298676152|ref|YP_003727901.1|	-	0.088	12.8	0.1	0.23	11.4	0.1	1.8	1	1	0	1	1	1	0	Peptidase	S24-like
Glycos_transf_1	PF00534.20	gi|298676153|ref|YP_003727902.1|	-	1.7e-40	138.4	0.0	3.6e-40	137.3	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|298676153|ref|YP_003727902.1|	-	2.7e-30	105.5	0.0	4.4e-30	104.9	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|298676153|ref|YP_003727902.1|	-	2.2e-15	57.0	0.0	1.8e-13	50.8	0.0	2.8	2	1	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_2	PF13477.6	gi|298676153|ref|YP_003727902.1|	-	4.9e-10	39.6	1.0	2.2e-07	31.0	1.0	2.5	1	1	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_trans_1_2	PF13524.6	gi|298676153|ref|YP_003727902.1|	-	1.2e-06	28.8	0.0	3.1e-06	27.5	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|298676153|ref|YP_003727902.1|	-	0.0026	18.2	0.0	0.04	14.4	0.0	2.5	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_5	PF08323.11	gi|298676153|ref|YP_003727902.1|	-	0.051	13.2	0.1	0.1	12.3	0.1	1.5	1	1	0	1	1	1	0	Starch	synthase	catalytic	domain
Trp_syntA	PF00290.20	gi|298676153|ref|YP_003727902.1|	-	0.085	11.7	0.0	0.18	10.6	0.0	1.5	2	0	0	2	2	2	0	Tryptophan	synthase	alpha	chain
Polysacc_synt_3	PF13440.6	gi|298676154|ref|YP_003727903.1|	-	1.5e-19	70.3	17.4	1.5e-19	70.3	17.4	2.3	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|298676154|ref|YP_003727903.1|	-	2.1e-18	66.7	26.8	2.1e-18	66.7	26.8	3.6	3	1	0	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt	PF01943.17	gi|298676154|ref|YP_003727903.1|	-	2.5e-15	56.6	28.8	2.5e-15	56.6	28.8	2.5	1	1	2	3	3	3	1	Polysaccharide	biosynthesis	protein
MurJ	PF03023.14	gi|298676154|ref|YP_003727903.1|	-	7.3e-09	34.7	43.2	7.3e-09	34.7	43.2	2.9	1	1	1	2	2	2	1	Lipid	II	flippase	MurJ
MatE	PF01554.18	gi|298676154|ref|YP_003727903.1|	-	1.8e-08	34.2	2.1	1.8e-08	34.2	2.1	4.5	3	2	1	4	4	4	2	MatE
Sulfotransfer_3	PF13469.6	gi|298676155|ref|YP_003727904.1|	-	6.1e-10	39.8	0.0	3.6e-08	34.1	0.0	2.8	1	1	0	1	1	1	1	Sulfotransferase	family
Proteasom_PSMB	PF10508.9	gi|298676155|ref|YP_003727904.1|	-	0.02	13.4	0.0	0.029	12.9	0.0	1.1	1	0	0	1	1	1	0	Proteasome	non-ATPase	26S	subunit
NTP_transferase	PF00483.23	gi|298676156|ref|YP_003727905.1|	-	8.7e-43	146.7	0.0	9.8e-43	146.5	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|298676156|ref|YP_003727905.1|	-	4.3e-15	56.4	0.0	5.6e-15	56.1	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|298676156|ref|YP_003727905.1|	-	9.9e-08	32.0	0.1	5.8e-07	29.5	0.1	2.1	1	1	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.26	gi|298676156|ref|YP_003727905.1|	-	0.0037	17.1	0.2	0.0062	16.4	0.2	1.4	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
DUF2408	PF10303.9	gi|298676157|ref|YP_003727906.1|	-	0.018	15.6	0.0	0.069	13.7	0.0	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2408)
OrfB_IS605	PF01385.19	gi|298676158|ref|YP_003727907.1|	-	8.4e-22	77.6	0.0	1.7e-21	76.6	0.0	1.5	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|298676158|ref|YP_003727907.1|	-	8e-12	44.9	0.0	1.7e-11	43.9	0.0	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Glyco_hydro_97	PF10566.9	gi|298676158|ref|YP_003727907.1|	-	0.0001	21.7	0.1	0.00018	20.9	0.1	1.4	1	0	0	1	1	1	1	Glycoside	hydrolase	97
EAP30	PF04157.16	gi|298676158|ref|YP_003727907.1|	-	0.067	12.5	0.0	0.11	11.7	0.0	1.4	1	0	0	1	1	1	0	EAP30/Vps36	family
RuvX	PF03652.15	gi|298676158|ref|YP_003727907.1|	-	0.15	12.4	0.0	0.3	11.5	0.0	1.5	1	0	0	1	1	1	0	Holliday	junction	resolvase
HEPN_Swt1	PF18731.1	gi|298676158|ref|YP_003727907.1|	-	0.16	12.4	1.7	0.23	11.8	0.7	1.8	2	0	0	2	2	2	0	Swt1-like	HEPN
Mrr_cat	PF04471.12	gi|298676159|ref|YP_003727908.1|	-	8.9e-27	93.4	0.1	6.4e-25	87.4	0.2	2.4	2	0	0	2	2	2	1	Restriction	endonuclease
Mrr_cat_2	PF13156.6	gi|298676159|ref|YP_003727908.1|	-	1.1e-06	28.6	0.3	1.1e-06	28.6	0.3	2.0	3	0	0	3	3	3	1	Restriction	endonuclease
CARD	PF00619.21	gi|298676159|ref|YP_003727908.1|	-	0.00015	21.7	0.8	0.5	10.4	0.1	3.5	2	1	1	3	3	3	1	Caspase	recruitment	domain
FAD_binding_1	PF00667.20	gi|298676159|ref|YP_003727908.1|	-	0.0049	16.5	0.8	0.0093	15.6	0.4	1.7	1	1	1	2	2	2	1	FAD	binding	domain
Ferritin	PF00210.24	gi|298676159|ref|YP_003727908.1|	-	0.17	11.8	3.5	0.47	10.4	1.0	2.6	1	1	0	2	2	2	0	Ferritin-like	domain
HEAT_PBS	PF03130.16	gi|298676159|ref|YP_003727908.1|	-	0.2	12.4	0.1	63	4.7	0.0	3.2	3	0	0	3	3	3	0	PBS	lyase	HEAT-like	repeat
Mrr_cat	PF04471.12	gi|298676160|ref|YP_003727909.1|	-	1.9e-23	82.7	0.2	3.7e-23	81.7	0.2	1.5	1	0	0	1	1	1	1	Restriction	endonuclease
Mrr_cat_2	PF13156.6	gi|298676160|ref|YP_003727909.1|	-	5.6e-06	26.3	0.4	1.2e-05	25.2	0.2	1.7	1	1	0	1	1	1	1	Restriction	endonuclease
BTB	PF00651.31	gi|298676160|ref|YP_003727909.1|	-	0.019	15.2	1.3	0.48	10.7	0.1	2.9	2	1	0	2	2	2	0	BTB/POZ	domain
HECT	PF00632.25	gi|298676160|ref|YP_003727909.1|	-	0.081	12.4	1.1	0.11	11.9	1.1	1.3	1	0	0	1	1	1	0	HECT-domain	(ubiquitin-transferase)
PemK_toxin	PF02452.17	gi|298676161|ref|YP_003727910.1|	-	3.8e-11	43.3	0.0	4.2e-11	43.2	0.0	1.0	1	0	0	1	1	1	1	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
FliW	PF02623.15	gi|298676161|ref|YP_003727910.1|	-	0.046	13.6	0.0	0.053	13.4	0.0	1.2	1	0	0	1	1	1	0	FliW	protein
MazE_antitoxin	PF04014.18	gi|298676162|ref|YP_003727911.1|	-	4.4e-09	36.0	0.1	6e-09	35.6	0.1	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|298676162|ref|YP_003727911.1|	-	0.0038	17.6	0.1	0.0055	17.1	0.1	1.5	1	1	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
MraZ	PF02381.18	gi|298676162|ref|YP_003727911.1|	-	0.091	12.8	0.0	0.12	12.4	0.0	1.3	1	0	0	1	1	1	0	MraZ	protein,	putative	antitoxin-like
Phage_T4_gp36	PF03903.13	gi|298676162|ref|YP_003727911.1|	-	0.2	11.6	0.0	0.21	11.5	0.0	1.1	1	0	0	1	1	1	0	Phage	T4	tail	fibre
S-layer	PF07752.11	gi|298676163|ref|YP_003727912.1|	-	2.5e-154	511.8	32.1	5.1e-78	261.7	13.5	3.1	2	0	0	2	2	2	2	S-layer	protein
Peptidase_S8	PF00082.22	gi|298676163|ref|YP_003727912.1|	-	6.8e-48	163.4	8.4	6.8e-48	163.4	8.4	3.7	2	1	0	2	2	2	1	Subtilase	family
Big_2	PF02368.18	gi|298676163|ref|YP_003727912.1|	-	7.8e-08	32.1	2.6	7.8e-08	32.1	2.6	5.7	5	0	0	5	5	5	1	Bacterial	Ig-like	domain	(group	2)
FlgD_ig	PF13860.6	gi|298676163|ref|YP_003727912.1|	-	0.00021	21.1	0.1	0.00021	21.1	0.1	6.4	7	0	0	7	7	7	1	FlgD	Ig-like	domain
DUF2271	PF10029.9	gi|298676163|ref|YP_003727912.1|	-	0.00052	19.7	0.6	0.024	14.3	0.1	3.3	3	0	0	3	3	3	1	Predicted	periplasmic	protein	(DUF2271)
DUF4625	PF15418.6	gi|298676163|ref|YP_003727912.1|	-	0.0074	16.5	20.4	0.35	11.1	0.6	6.7	5	1	1	6	6	6	2	Domain	of	unknown	function	(DUF4625)
DUF4179	PF13786.6	gi|298676163|ref|YP_003727912.1|	-	0.058	13.9	3.1	0.55	10.7	0.1	3.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4179)
Peptidase_S49_N	PF08496.10	gi|298676163|ref|YP_003727912.1|	-	0.31	11.1	2.2	0.66	10.0	2.2	1.4	1	0	0	1	1	1	0	Peptidase	family	S49	N-terminal
RGI_lyase	PF18370.1	gi|298676163|ref|YP_003727912.1|	-	2.4	8.5	6.9	8.3	6.8	0.0	5.0	4	0	0	4	4	4	0	Rhamnogalacturonan	I	lyases	beta-sheet	domain
KxDL	PF10241.9	gi|298676165|ref|YP_003727914.1|	-	0.086	13.1	0.8	0.21	11.9	0.8	1.7	1	0	0	1	1	1	0	Uncharacterized	conserved	protein
TaqI_C	PF12950.7	gi|298676166|ref|YP_003727915.1|	-	0.053	13.6	0.2	0.15	12.1	0.2	1.7	1	0	0	1	1	1	0	TaqI-like	C-terminal	specificity	domain
Tubulin_2	PF13809.6	gi|298676167|ref|YP_003727916.1|	-	3.1e-09	36.5	0.0	3.1e-09	36.5	0.0	2.4	2	1	0	2	2	2	1	Tubulin	like
Tubulin	PF00091.25	gi|298676167|ref|YP_003727916.1|	-	4.4e-07	30.3	0.0	4.4e-07	30.3	0.0	4.1	4	0	0	4	4	4	1	Tubulin/FtsZ	family,	GTPase	domain
DUF1563	PF07599.11	gi|298676167|ref|YP_003727916.1|	-	0.024	14.7	0.9	0.23	11.6	0.2	3.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1563)
Arch_flagellin	PF01917.16	gi|298676168|ref|YP_003727917.1|	-	1.7e-31	109.6	7.0	1.7e-31	109.6	7.0	2.1	1	1	1	2	2	2	1	Archaebacterial	flagellin
VanW	PF04294.13	gi|298676168|ref|YP_003727917.1|	-	0.034	13.8	0.1	0.11	12.2	0.1	1.7	1	1	0	1	1	1	0	VanW	like	protein
Clr5	PF14420.6	gi|298676169|ref|YP_003727918.1|	-	0.045	14.0	0.2	0.062	13.5	0.2	1.2	1	0	0	1	1	1	0	Clr5	domain
SF1-HH	PF16275.5	gi|298676169|ref|YP_003727918.1|	-	0.14	12.5	0.0	0.16	12.3	0.0	1.1	1	0	0	1	1	1	0	Splicing	factor	1	helix-hairpin	domain
TraT	PF05818.12	gi|298676170|ref|YP_003727919.1|	-	0.016	14.9	0.1	0.018	14.8	0.1	1.0	1	0	0	1	1	1	0	Enterobacterial	TraT	complement	resistance	protein
AHJR-like	PF18743.1	gi|298676170|ref|YP_003727919.1|	-	0.049	13.2	0.1	0.056	13.0	0.1	1.2	1	0	0	1	1	1	0	REase_AHJR-like
OrfB_IS605	PF01385.19	gi|298676171|ref|YP_003727920.1|	-	8.4e-26	90.6	0.8	2.2e-25	89.2	0.0	2.0	2	0	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|298676171|ref|YP_003727920.1|	-	8.9e-12	44.8	0.3	2.4e-11	43.4	0.1	1.9	2	1	0	2	2	2	1	Putative	transposase	DNA-binding	domain
RuvX	PF03652.15	gi|298676171|ref|YP_003727920.1|	-	0.018	15.5	0.0	0.037	14.4	0.0	1.5	1	0	0	1	1	1	0	Holliday	junction	resolvase
MTES_1575	PF18741.1	gi|298676172|ref|YP_003727921.1|	-	3e-36	123.5	0.2	1.1e-35	121.6	0.1	2.1	2	0	0	2	2	2	1	REase_MTES_1575
AAA_12	PF13087.6	gi|298676172|ref|YP_003727921.1|	-	1.8e-14	53.8	3.5	3e-13	49.9	1.7	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|298676172|ref|YP_003727921.1|	-	1.5e-09	38.1	0.1	3.1e-09	37.0	0.1	1.6	1	1	0	1	1	1	1	AAA	domain
DUF559	PF04480.12	gi|298676172|ref|YP_003727921.1|	-	0.00027	20.7	0.0	0.00079	19.3	0.0	1.8	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF559)
RAP	PF08373.10	gi|298676172|ref|YP_003727921.1|	-	0.0014	18.6	0.5	0.0053	16.8	0.1	2.3	3	0	0	3	3	3	1	RAP	domain
AAA_19	PF13245.6	gi|298676172|ref|YP_003727921.1|	-	0.0021	18.4	0.0	0.0043	17.4	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|298676172|ref|YP_003727921.1|	-	0.004	16.9	0.0	0.009	15.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
UvrD-helicase	PF00580.21	gi|298676172|ref|YP_003727921.1|	-	0.0091	15.6	1.5	0.021	14.4	1.5	1.7	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
Viral_helicase1	PF01443.18	gi|298676172|ref|YP_003727921.1|	-	0.016	15.0	0.0	0.035	13.9	0.0	1.5	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
PAS_3	PF08447.12	gi|298676173|ref|YP_003727922.1|	-	1.2e-45	153.7	0.9	1e-20	73.8	0.3	3.7	4	0	0	4	4	4	3	PAS	fold
PAS_9	PF13426.7	gi|298676173|ref|YP_003727922.1|	-	3.9e-32	110.6	6.2	4e-13	49.5	0.0	4.1	4	0	0	4	4	4	4	PAS	domain
PAS	PF00989.25	gi|298676173|ref|YP_003727922.1|	-	2.7e-25	88.6	0.1	4e-15	55.8	0.0	4.1	4	0	0	4	4	4	3	PAS	fold
PAS_4	PF08448.10	gi|298676173|ref|YP_003727922.1|	-	4e-25	88.2	0.0	2.1e-10	40.8	0.0	4.2	4	0	0	4	4	4	4	PAS	fold
PAS_11	PF14598.6	gi|298676173|ref|YP_003727922.1|	-	7.1e-09	35.8	0.0	5.3e-06	26.5	0.0	2.7	2	1	0	2	2	2	2	PAS	domain
PAS_8	PF13188.7	gi|298676173|ref|YP_003727922.1|	-	4.4e-06	26.6	0.0	0.73	9.9	0.0	4.3	4	0	0	4	4	4	1	PAS	domain
PAS_7	PF12860.7	gi|298676173|ref|YP_003727922.1|	-	0.018	15.2	0.5	2	8.6	0.0	3.9	4	1	0	4	4	4	0	PAS	fold
HisKA_2	PF07568.12	gi|298676174|ref|YP_003727923.1|	-	9.2e-30	102.6	5.1	9.2e-30	102.6	5.1	2.4	2	1	0	2	2	2	1	Histidine	kinase
HATPase_c	PF02518.26	gi|298676174|ref|YP_003727923.1|	-	1.7e-07	31.7	0.0	1.7e-06	28.5	0.0	2.4	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HWE_HK	PF07536.14	gi|298676174|ref|YP_003727923.1|	-	4.6e-07	30.4	1.6	1.5e-06	28.8	0.2	2.3	2	0	0	2	2	2	1	HWE	histidine	kinase
HATPase_c_2	PF13581.6	gi|298676174|ref|YP_003727923.1|	-	0.00049	20.0	0.0	0.0011	18.9	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
Apolipoprotein	PF01442.18	gi|298676174|ref|YP_003727923.1|	-	0.011	15.6	2.9	0.013	15.4	2.9	1.1	1	0	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
Gluconate_2-dh3	PF13618.6	gi|298676174|ref|YP_003727923.1|	-	0.011	15.9	1.3	0.018	15.3	1.3	1.4	1	1	0	1	1	1	0	Gluconate	2-dehydrogenase	subunit	3
PIN_8	PF18476.1	gi|298676174|ref|YP_003727923.1|	-	0.031	14.1	5.7	0.043	13.7	5.7	1.2	1	0	0	1	1	1	0	PIN	like	domain
SPOB_a	PF14689.6	gi|298676174|ref|YP_003727923.1|	-	0.08	12.7	8.1	0.12	12.1	1.6	3.4	3	1	1	4	4	4	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
Succ_DH_flav_C	PF02910.20	gi|298676174|ref|YP_003727923.1|	-	0.091	12.8	1.9	0.16	12.0	1.9	1.3	1	0	0	1	1	1	0	Fumarate	reductase	flavoprotein	C-term
Fib_alpha	PF08702.10	gi|298676174|ref|YP_003727923.1|	-	0.23	11.6	6.5	0.36	11.0	6.5	1.4	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
DUF572	PF04502.13	gi|298676174|ref|YP_003727923.1|	-	0.37	10.4	4.3	0.45	10.1	4.3	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF572)
Spc29	PF17082.5	gi|298676174|ref|YP_003727923.1|	-	2.7	7.8	9.9	4.6	7.0	0.3	2.1	1	1	1	2	2	2	0	Spindle	Pole	Component	29
YdjM	PF04307.14	gi|298676176|ref|YP_003727925.1|	-	5.2e-15	55.2	3.8	6.5e-15	54.9	3.8	1.1	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Lar_restr_allev	PF14354.6	gi|298676177|ref|YP_003727926.1|	-	0.0012	19.2	0.5	0.0014	19.0	0.5	1.1	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
TF_Zn_Ribbon	PF08271.12	gi|298676177|ref|YP_003727926.1|	-	0.0019	17.7	0.8	0.0027	17.2	0.8	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
FlhC	PF05280.11	gi|298676177|ref|YP_003727926.1|	-	0.0048	16.6	0.3	0.0054	16.5	0.3	1.0	1	0	0	1	1	1	1	Flagellar	transcriptional	activator	(FlhC)
DNA_ligase_ZBD	PF03119.16	gi|298676177|ref|YP_003727926.1|	-	0.029	14.4	0.9	0.12	12.4	0.9	2.0	1	1	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Opiods_neuropep	PF01160.18	gi|298676177|ref|YP_003727926.1|	-	0.038	14.1	0.5	0.043	13.9	0.5	1.1	1	0	0	1	1	1	0	Vertebrate	endogenous	opioids	neuropeptide
DUF4428	PF14471.6	gi|298676177|ref|YP_003727926.1|	-	0.049	13.6	1.3	0.074	13.0	1.3	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4428)
DUF1272	PF06906.11	gi|298676177|ref|YP_003727926.1|	-	0.072	13.2	2.9	0.88	9.7	0.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1272)
zinc_ribbon_9	PF14369.6	gi|298676177|ref|YP_003727926.1|	-	0.16	12.3	0.6	0.16	12.3	0.6	1.5	1	1	0	1	1	1	0	zinc-ribbon
VATC	PF18716.1	gi|298676177|ref|YP_003727926.1|	-	0.21	11.5	2.6	2.8	7.8	2.6	2.0	1	1	0	1	1	1	0	Vms1-associating	treble	clef	domain
DUF1616	PF07760.11	gi|298676178|ref|YP_003727927.1|	-	3.3e-113	377.9	0.2	3.8e-113	377.7	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
MFS_1	PF07690.16	gi|298676178|ref|YP_003727927.1|	-	2.3e-06	26.8	1.8	3.5e-06	26.2	1.8	1.2	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
DUF4064	PF13273.6	gi|298676178|ref|YP_003727927.1|	-	0.044	14.1	0.1	0.044	14.1	0.1	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF4064)
DUF872	PF05915.12	gi|298676178|ref|YP_003727927.1|	-	0.22	11.7	0.9	26	5.0	0.0	2.4	2	0	0	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF872)
CPBP	PF02517.16	gi|298676179|ref|YP_003727928.1|	-	2.3e-17	63.2	5.4	2.3e-17	63.2	5.4	2.4	2	1	0	2	2	2	1	CPBP	intramembrane	metalloprotease
DUF1419	PF07215.11	gi|298676179|ref|YP_003727928.1|	-	0.15	12.2	0.4	2.2	8.4	0.1	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1419)
Y_Y_Y	PF07495.13	gi|298676181|ref|YP_003727930.1|	-	4.7e-06	26.5	1.0	0.00031	20.7	0.0	3.0	3	0	0	3	3	3	1	Y_Y_Y	domain
DUF669	PF05037.13	gi|298676181|ref|YP_003727930.1|	-	0.028	14.6	0.2	12	6.0	0.0	3.2	2	1	2	4	4	4	0	Protein	of	unknown	function	(DUF669)
BsuPI	PF12690.7	gi|298676181|ref|YP_003727930.1|	-	0.043	13.8	1.1	1.7	8.7	0.7	3.3	4	0	0	4	4	4	0	Intracellular	proteinase	inhibitor
Big_3_5	PF16640.5	gi|298676181|ref|YP_003727930.1|	-	0.067	13.4	2.0	9	6.6	0.6	3.6	3	1	0	3	3	3	0	Bacterial	Ig-like	domain	(group	3)
Tox-ODYAM1	PF15642.6	gi|298676181|ref|YP_003727930.1|	-	0.076	12.0	0.8	0.11	11.4	0.8	1.2	1	0	0	1	1	1	0	Toxin	in	Odyssella	and	Amoebophilus
UPF0228	PF05727.11	gi|298676183|ref|YP_003727932.1|	-	1e-26	93.2	9.9	1.2e-26	92.9	9.4	1.4	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0228)
DUF3221	PF11518.8	gi|298676183|ref|YP_003727932.1|	-	0.26	11.7	2.9	0.52	10.7	0.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3221)
PGF-CTERM	PF18204.1	gi|298676185|ref|YP_003727934.1|	-	0.041	13.9	4.3	0.069	13.1	4.3	1.3	1	0	0	1	1	1	0	PGF-CTERM	motif
TraA	PF05513.11	gi|298676185|ref|YP_003727934.1|	-	0.042	14.2	0.1	2	8.8	0.0	2.5	2	0	0	2	2	2	0	TraA
Pilin_N	PF07790.11	gi|298676186|ref|YP_003727935.1|	-	0.00014	22.7	0.1	0.00041	21.2	0.0	1.9	2	0	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
UPF0228	PF05727.11	gi|298676188|ref|YP_003727937.1|	-	6.3e-41	139.1	4.1	6.3e-41	139.1	4.1	2.0	1	1	1	2	2	2	2	Uncharacterised	protein	family	(UPF0228)
DUF3149	PF11346.8	gi|298676189|ref|YP_003727938.1|	-	0.012	15.2	2.3	0.012	15.2	2.3	2.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3149)
E1-E2_ATPase	PF00122.20	gi|298676189|ref|YP_003727938.1|	-	0.6	9.6	1.7	0.67	9.5	1.7	1.1	1	0	0	1	1	1	0	E1-E2	ATPase
DUF2207	PF09972.9	gi|298676189|ref|YP_003727938.1|	-	1.3	7.7	6.1	1.5	7.5	6.1	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DHHC	PF01529.20	gi|298676189|ref|YP_003727938.1|	-	3.1	7.9	5.6	3.8	7.6	5.6	1.0	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
MMADHC	PF10229.9	gi|298676190|ref|YP_003727939.1|	-	0.083	12.6	0.0	0.65	9.7	0.0	1.9	2	0	0	2	2	2	0	Methylmalonic	aciduria	and	homocystinuria	type	D	protein
GRP	PF07172.11	gi|298676191|ref|YP_003727940.1|	-	0.084	13.6	0.4	0.092	13.4	0.4	1.0	1	0	0	1	1	1	0	Glycine	rich	protein	family
NosD	PF05048.13	gi|298676192|ref|YP_003727941.1|	-	2.4e-44	151.4	123.7	2e-19	69.8	35.8	3.1	1	1	2	3	3	3	3	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.6	gi|298676192|ref|YP_003727941.1|	-	4.7e-36	124.0	133.2	1.2e-17	64.2	39.8	3.4	2	1	2	4	4	4	3	Right	handed	beta	helix	region
FixG_C	PF11614.8	gi|298676194|ref|YP_003727943.1|	-	3.9e-10	40.0	49.9	0.0035	17.5	1.9	7.7	6	1	1	7	7	7	5	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
PGF-CTERM	PF18204.1	gi|298676194|ref|YP_003727943.1|	-	0.00011	22.0	0.4	0.00017	21.4	0.4	1.3	1	0	0	1	1	1	1	PGF-CTERM	motif
DUF11	PF01345.18	gi|298676194|ref|YP_003727943.1|	-	0.0015	18.7	57.0	0.011	16.0	1.6	6.9	6	1	1	7	7	7	4	Domain	of	unknown	function	DUF11
Ail_Lom	PF06316.11	gi|298676194|ref|YP_003727943.1|	-	0.0021	17.8	2.5	0.92	9.2	0.4	3.1	2	1	0	2	2	2	2	Enterobacterial	Ail/Lom	protein
Fn3-like	PF14310.6	gi|298676194|ref|YP_003727943.1|	-	0.057	13.5	0.0	19	5.4	0.0	4.3	3	0	0	3	3	3	0	Fibronectin	type	III-like	domain
Pentapeptide_4	PF13599.6	gi|298676194|ref|YP_003727943.1|	-	0.088	13.0	0.1	0.38	10.9	0.1	2.1	1	0	0	1	1	1	0	Pentapeptide	repeats	(9	copies)
BsuPI	PF12690.7	gi|298676194|ref|YP_003727943.1|	-	1.2	9.2	26.1	3.2	7.8	0.8	8.2	10	1	0	10	10	10	0	Intracellular	proteinase	inhibitor
ASH	PF15780.5	gi|298676194|ref|YP_003727943.1|	-	2.4	8.4	33.7	0.76	10.0	0.8	6.8	6	1	1	7	7	7	0	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
Pilin_N	PF07790.11	gi|298676195|ref|YP_003727944.1|	-	3e-24	85.7	1.5	3e-24	85.7	1.5	1.9	2	0	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
Response_reg	PF00072.24	gi|298676196|ref|YP_003727945.1|	-	4.4e-28	97.7	0.1	4.9e-28	97.5	0.1	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Ras	PF00071.22	gi|298676197|ref|YP_003727946.1|	-	0.071	12.7	0.1	0.12	11.9	0.1	1.4	1	0	0	1	1	1	0	Ras	family
Imm6	PF14434.6	gi|298676197|ref|YP_003727946.1|	-	0.2	11.6	6.8	0.26	11.2	1.1	2.8	2	1	1	3	3	3	0	Immunity	protein	Imm6
RAMP4	PF06624.12	gi|298676198|ref|YP_003727947.1|	-	0.016	15.3	0.3	0.034	14.2	0.3	1.5	1	0	0	1	1	1	0	Ribosome	associated	membrane	protein	RAMP4
GatB_Yqey	PF02637.18	gi|298676198|ref|YP_003727947.1|	-	0.018	15.0	1.1	0.025	14.5	0.5	1.6	2	0	0	2	2	2	0	GatB	domain
SNF2_assoc	PF08455.10	gi|298676199|ref|YP_003727948.1|	-	0.00075	18.6	0.9	0.00086	18.4	0.9	1.1	1	0	0	1	1	1	1	Bacterial	SNF2	helicase	associated
GatB_Yqey	PF02637.18	gi|298676199|ref|YP_003727948.1|	-	0.02	14.7	0.7	0.024	14.5	0.7	1.1	1	0	0	1	1	1	0	GatB	domain
FRP	PF18032.1	gi|298676199|ref|YP_003727948.1|	-	0.057	14.0	0.3	0.11	13.2	0.1	1.6	2	0	0	2	2	2	0	Photoprotection	regulator	fluorescence	recovery	protein
EamA	PF00892.20	gi|298676202|ref|YP_003727951.1|	-	4.6e-13	49.5	51.1	8.1e-06	26.0	19.6	3.1	2	1	0	2	2	2	2	EamA-like	transporter	family
Rer1	PF03248.13	gi|298676204|ref|YP_003727953.1|	-	0.084	12.6	2.4	0.1	12.4	2.4	1.0	1	0	0	1	1	1	0	Rer1	family
DDE_3	PF13358.6	gi|298676205|ref|YP_003727954.1|	-	1.5e-21	76.7	0.1	2e-21	76.3	0.1	1.2	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_1	PF03184.19	gi|298676205|ref|YP_003727954.1|	-	9.7e-05	22.1	0.1	0.00012	21.8	0.1	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|298676205|ref|YP_003727954.1|	-	0.00031	20.9	0.0	0.00046	20.4	0.0	1.2	1	0	0	1	1	1	1	Integrase	core	domain
HTH_32	PF13565.6	gi|298676206|ref|YP_003727955.1|	-	5.6e-11	42.9	0.1	1.1e-10	42.0	0.1	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_23	PF13384.6	gi|298676206|ref|YP_003727955.1|	-	3.8e-08	32.9	0.2	1.2e-07	31.3	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_33	PF13592.6	gi|298676206|ref|YP_003727955.1|	-	1.7e-07	30.7	0.3	1.4e-06	27.8	0.1	2.4	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|298676206|ref|YP_003727955.1|	-	7.7e-07	29.1	0.0	1.7e-06	28.0	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|298676206|ref|YP_003727955.1|	-	7.4e-06	25.9	0.0	1.6e-05	24.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
DUF559	PF04480.12	gi|298676206|ref|YP_003727955.1|	-	0.0021	17.9	0.3	0.006	16.4	0.1	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF559)
HTH_Tnp_IS630	PF01710.16	gi|298676206|ref|YP_003727955.1|	-	0.0025	17.8	0.4	0.0043	17.1	0.2	1.5	1	1	0	1	1	1	1	Transposase
Tau95	PF09734.9	gi|298676206|ref|YP_003727955.1|	-	0.03	15.1	0.3	0.057	14.2	0.2	1.5	1	1	0	1	1	1	0	RNA	polymerase	III	transcription	factor	(TF)IIIC	subunit	HTH	domain
LZ_Tnp_IS481	PF13011.6	gi|298676206|ref|YP_003727955.1|	-	0.15	12.7	0.0	0.23	12.0	0.0	1.4	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
U3_assoc_6	PF08640.11	gi|298676206|ref|YP_003727955.1|	-	0.42	10.7	4.4	0.43	10.7	0.3	2.7	3	0	0	3	3	3	0	U3	small	nucleolar	RNA-associated	protein	6
MetOD1	PF18546.1	gi|298676207|ref|YP_003727956.1|	-	1.7e-40	138.5	1.6	2.9e-40	137.8	1.6	1.4	1	0	0	1	1	1	1	Metanogen	output	domain	1
PAS_9	PF13426.7	gi|298676207|ref|YP_003727956.1|	-	3.9e-23	81.7	1.4	4.2e-11	43.0	0.1	2.8	3	0	0	3	3	3	2	PAS	domain
PAS_8	PF13188.7	gi|298676207|ref|YP_003727956.1|	-	9.5e-17	60.6	0.2	9.4e-09	35.1	0.0	2.5	2	0	0	2	2	2	2	PAS	domain
PAS_4	PF08448.10	gi|298676207|ref|YP_003727956.1|	-	5.9e-16	58.7	0.0	1.7e-07	31.5	0.0	2.2	2	0	0	2	2	2	2	PAS	fold
PAS	PF00989.25	gi|298676207|ref|YP_003727956.1|	-	3.9e-13	49.4	0.1	1.2e-05	25.3	0.0	2.7	2	0	0	2	2	2	2	PAS	fold
PAS_3	PF08447.12	gi|298676207|ref|YP_003727956.1|	-	4.8e-07	30.0	0.0	0.0082	16.4	0.0	2.5	2	0	0	2	2	2	2	PAS	fold
DUF3877	PF12993.7	gi|298676207|ref|YP_003727956.1|	-	0.0034	17.3	0.1	0.011	15.6	0.1	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function,	E.	rectale	Gene	description	(DUF3877)
ATC_hydrolase	PF14196.6	gi|298676207|ref|YP_003727956.1|	-	0.21	12.4	1.3	0.73	10.6	1.3	1.9	1	1	0	1	1	1	0	L-2-amino-thiazoline-4-carboxylic	acid	hydrolase
Glug	PF07581.12	gi|298676209|ref|YP_003727958.1|	-	5.3e-48	158.3	187.2	0.00053	20.2	2.5	25.7	26	0	0	26	26	26	20	The	GLUG	motif
NosD	PF05048.13	gi|298676209|ref|YP_003727958.1|	-	1.5e-31	109.6	94.6	2e-24	86.2	34.8	6.2	4	1	2	6	6	6	2	Periplasmic	copper-binding	protein	(NosD)
Trypan_PARP	PF05887.11	gi|298676209|ref|YP_003727958.1|	-	0.014	15.4	2.6	0.04	13.9	2.6	1.8	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
DUF5094	PF17015.5	gi|298676210|ref|YP_003727959.1|	-	0.13	12.4	9.0	0.15	12.1	9.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5094)
ThiS	PF02597.20	gi|298676212|ref|YP_003727961.1|	-	0.12	13.0	0.0	0.21	12.2	0.0	1.5	1	0	0	1	1	1	0	ThiS	family
Pilin_N	PF07790.11	gi|298676212|ref|YP_003727961.1|	-	0.15	13.0	0.4	0.42	11.6	0.4	1.9	1	1	0	1	1	1	0	Archaeal	Type	IV	pilin,	N-terminal
ParE_toxin	PF05016.15	gi|298676214|ref|YP_003727963.1|	-	2.7e-06	27.9	0.5	4.1e-06	27.3	0.5	1.3	1	1	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
Gp49	PF05973.14	gi|298676214|ref|YP_003727963.1|	-	0.00015	21.8	0.0	0.00018	21.6	0.0	1.1	1	0	0	1	1	1	1	Phage	derived	protein	Gp49-like	(DUF891)
ParE-like_toxin	PF15781.5	gi|298676214|ref|YP_003727963.1|	-	0.00017	21.5	0.5	0.00026	20.9	0.5	1.3	1	1	0	1	1	1	1	ParE-like	toxin	of	type	II	bacterial	toxin-antitoxin	system
DUF4364	PF14277.6	gi|298676214|ref|YP_003727963.1|	-	0.0034	17.2	0.4	0.0041	16.9	0.4	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
Gag_p24	PF00607.20	gi|298676215|ref|YP_003727964.1|	-	0.00061	19.7	0.0	0.00073	19.5	0.0	1.1	1	0	0	1	1	1	1	gag	gene	protein	p24	(core	nucleocapsid	protein)
zf-C2H2_4	PF13894.6	gi|298676217|ref|YP_003727966.1|	-	9.1e-08	32.3	34.4	0.0031	18.2	1.6	5.9	6	0	0	6	6	6	3	C2H2-type	zinc	finger
zf-Di19	PF05605.12	gi|298676217|ref|YP_003727966.1|	-	3.9e-07	30.2	19.8	0.08	13.3	0.1	4.0	2	1	0	3	3	3	3	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_jaz	PF12171.8	gi|298676217|ref|YP_003727966.1|	-	8.3e-07	29.1	12.4	0.00033	20.9	2.5	4.6	5	1	0	5	5	3	2	Zinc-finger	double-stranded	RNA-binding
DZR	PF12773.7	gi|298676217|ref|YP_003727966.1|	-	0.00054	19.9	13.0	0.015	15.3	1.7	3.2	2	1	1	3	3	3	2	Double	zinc	ribbon
zf-C2H2	PF00096.26	gi|298676217|ref|YP_003727966.1|	-	0.0014	19.0	38.9	0.016	15.6	3.3	5.7	6	0	0	6	6	6	3	Zinc	finger,	C2H2	type
zf-C2HC_2	PF13913.6	gi|298676217|ref|YP_003727966.1|	-	0.0061	16.4	4.8	0.084	12.8	0.4	4.4	5	0	0	5	5	4	2	zinc-finger	of	a	C2HC-type
zf-C2H2_2	PF12756.7	gi|298676217|ref|YP_003727966.1|	-	0.008	16.5	27.1	0.1	12.9	6.0	3.6	1	1	2	3	3	3	3	C2H2	type	zinc-finger	(2	copies)
zf-met	PF12874.7	gi|298676217|ref|YP_003727966.1|	-	0.013	15.9	18.9	0.22	12.0	1.8	4.1	4	0	0	4	4	3	0	Zinc-finger	of	C2H2	type
PyrI_C	PF02748.15	gi|298676217|ref|YP_003727966.1|	-	0.018	14.9	12.9	0.098	12.6	0.4	3.3	3	1	0	3	3	3	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
NAD_binding_4	PF07993.12	gi|298676217|ref|YP_003727966.1|	-	0.019	14.1	0.3	1.8	7.6	0.0	2.0	1	1	1	2	2	2	0	Male	sterility	protein
HSP33	PF01430.19	gi|298676217|ref|YP_003727966.1|	-	0.029	13.8	1.8	3.8	6.8	0.1	2.3	2	0	0	2	2	2	0	Hsp33	protein
NinD	PF17466.2	gi|298676217|ref|YP_003727966.1|	-	0.03	14.4	0.4	4.8	7.3	0.0	2.9	3	0	0	3	3	3	0	Family	of	unknown	function
zinc-ribbons_6	PF07191.12	gi|298676217|ref|YP_003727966.1|	-	0.056	13.4	14.1	1.4	8.9	0.9	3.8	3	1	1	4	4	4	0	zinc-ribbons
DUF4370	PF14290.6	gi|298676217|ref|YP_003727966.1|	-	0.085	12.7	0.4	0.12	12.2	0.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4370)
zf-CHCC	PF10276.9	gi|298676217|ref|YP_003727966.1|	-	0.096	12.8	13.4	1.5	9.0	0.1	4.3	5	0	0	5	5	5	0	Zinc-finger	domain
zf-RING_7	PF02591.15	gi|298676217|ref|YP_003727966.1|	-	0.1	12.8	7.3	6.6	7.0	0.0	4.1	4	0	0	4	4	4	0	C4-type	zinc	ribbon	domain
Sgf11	PF08209.11	gi|298676217|ref|YP_003727966.1|	-	0.12	12.0	11.7	3.4	7.3	0.2	3.7	3	0	0	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
T6PP_N	PF18572.1	gi|298676217|ref|YP_003727966.1|	-	0.4	10.5	3.7	0.88	9.4	0.2	2.2	1	1	1	2	2	2	0	Trehalose-6-phosphate	phosphatase	N-terminal	helical	bundle	domain
DUF629	PF04780.12	gi|298676217|ref|YP_003727966.1|	-	0.58	8.6	17.9	2.5	6.5	2.6	3.2	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF629)
GFA	PF04828.14	gi|298676217|ref|YP_003727966.1|	-	1	9.7	14.4	4.7	7.6	2.4	3.5	3	1	0	3	3	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
CpXC	PF14353.6	gi|298676217|ref|YP_003727966.1|	-	1.3	9.1	13.6	0.85	9.7	0.4	3.7	2	2	1	3	3	3	0	CpXC	protein
zf-TFIIIC	PF12660.7	gi|298676217|ref|YP_003727966.1|	-	1.7	8.7	11.7	5.1	7.1	0.3	3.4	1	1	1	2	2	2	0	Putative	zinc-finger	of	transcription	factor	IIIC	complex
BolA	PF01722.18	gi|298676217|ref|YP_003727966.1|	-	3.1	8.1	10.0	27	5.1	1.9	3.1	1	1	1	2	2	2	0	BolA-like	protein
zf-AN1	PF01428.16	gi|298676217|ref|YP_003727966.1|	-	3.2	8.0	29.9	0.26	11.5	1.5	3.8	4	0	0	4	4	4	0	AN1-like	Zinc	finger
HNH	PF01844.23	gi|298676217|ref|YP_003727966.1|	-	9.4	6.5	24.4	1.5	9.0	0.4	4.8	5	0	0	5	5	5	0	HNH	endonuclease
DDE_3	PF13358.6	gi|298676218|ref|YP_003727967.1|	-	3.1e-32	111.3	0.1	4e-32	111.0	0.1	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
AviRa	PF11599.8	gi|298676218|ref|YP_003727967.1|	-	0.057	12.9	0.2	0.11	12.0	0.1	1.5	2	0	0	2	2	2	0	RRNA	methyltransferase	AviRa
SMC_ScpB	PF04079.16	gi|298676218|ref|YP_003727967.1|	-	0.1	12.2	0.0	0.17	11.5	0.0	1.5	1	0	0	1	1	1	0	Segregation	and	condensation	complex	subunit	ScpB
HTH_32	PF13565.6	gi|298676219|ref|YP_003727968.1|	-	1.2e-10	41.8	0.0	4.3e-10	40.1	0.0	1.8	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|298676219|ref|YP_003727968.1|	-	6.4e-10	38.9	0.0	1e-09	38.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|298676219|ref|YP_003727968.1|	-	4.7e-05	23.0	0.1	0.00016	21.3	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
Clathrin	PF00637.20	gi|298676219|ref|YP_003727968.1|	-	0.03	14.2	0.3	0.051	13.4	0.3	1.4	1	0	0	1	1	1	0	Region	in	Clathrin	and	VPS
ATG27	PF09451.10	gi|298676219|ref|YP_003727968.1|	-	0.17	11.7	1.4	3.4	7.5	0.1	2.0	1	1	1	2	2	2	0	Autophagy-related	protein	27
fn3	PF00041.21	gi|298676220|ref|YP_003727969.1|	-	5.2e-05	23.5	1.6	5.2e-05	23.5	1.6	3.3	3	0	0	3	3	3	1	Fibronectin	type	III	domain
YtkA	PF13115.6	gi|298676220|ref|YP_003727969.1|	-	2.2	8.9	7.2	1.2	9.8	0.2	4.1	4	0	0	4	4	4	0	YtkA-like
Gram_pos_anchor	PF00746.21	gi|298676221|ref|YP_003727970.1|	-	0.00058	19.7	0.1	0.0012	18.7	0.1	1.5	1	0	0	1	1	1	1	LPXTG	cell	wall	anchor	motif
MG4	PF17789.1	gi|298676221|ref|YP_003727970.1|	-	0.0018	18.4	1.3	1.6	8.9	0.2	2.8	2	0	0	2	2	2	2	Macroglobulin	domain	MG4
CarboxypepD_reg	PF13620.6	gi|298676221|ref|YP_003727970.1|	-	0.0064	16.7	1.7	0.013	15.8	0.2	2.3	2	0	0	2	2	2	1	Carboxypeptidase	regulatory-like	domain
Big_1	PF02369.16	gi|298676221|ref|YP_003727970.1|	-	0.022	14.8	0.1	0.022	14.8	0.1	3.1	4	0	0	4	4	4	0	Bacterial	Ig-like	domain	(group	1)
Pollen_Ole_e_I	PF01190.17	gi|298676221|ref|YP_003727970.1|	-	0.023	15.0	0.6	0.088	13.2	0.0	2.2	2	0	0	2	2	2	0	Pollen	proteins	Ole	e	I	like
SEP	PF08059.13	gi|298676221|ref|YP_003727970.1|	-	0.026	15.1	2.2	0.12	12.9	0.7	2.5	2	1	0	2	2	2	0	SEP	domain
TTR-52	PF01060.23	gi|298676221|ref|YP_003727970.1|	-	0.21	12.3	3.4	0.65	10.7	0.1	2.9	3	0	0	3	3	3	0	Transthyretin-like	family
Glyco_hydro_108	PF05838.12	gi|298676221|ref|YP_003727970.1|	-	0.7	10.4	3.6	2	8.9	1.9	2.5	2	1	0	2	2	2	0	Glycosyl	hydrolase	108
Cupredoxin_1	PF13473.6	gi|298676221|ref|YP_003727970.1|	-	1.2	9.3	4.4	3.2	7.9	3.2	2.3	2	1	0	2	2	2	0	Cupredoxin-like	domain
Pilin_N	PF07790.11	gi|298676221|ref|YP_003727970.1|	-	7.8	7.5	5.9	6.4	7.8	0.1	3.1	2	1	0	2	2	2	0	Archaeal	Type	IV	pilin,	N-terminal
DUF4625	PF15418.6	gi|298676223|ref|YP_003727972.1|	-	0.0023	18.2	1.2	0.0023	18.2	1.2	11.5	7	2	5	12	12	12	2	Domain	of	unknown	function	(DUF4625)
Big_7	PF17957.1	gi|298676223|ref|YP_003727972.1|	-	0.0033	18.1	18.8	0.0046	17.7	9.0	18.0	16	4	3	19	19	19	5	Bacterial	Ig	domain
DUF1616	PF07760.11	gi|298676223|ref|YP_003727972.1|	-	0.0049	16.3	1.0	0.0049	16.3	1.0	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1616)
Y_Y_Y	PF07495.13	gi|298676223|ref|YP_003727972.1|	-	3.3	7.7	8.2	6.7	6.7	0.0	5.3	4	0	0	4	4	4	0	Y_Y_Y	domain
DUF5462	PF17547.2	gi|298676223|ref|YP_003727972.1|	-	4.9	6.5	7.4	4.7	6.6	0.1	3.9	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5462)
Big_3_4	PF13754.6	gi|298676223|ref|YP_003727972.1|	-	5.3	6.8	8.9	4.5	7.1	0.0	5.2	6	0	0	6	6	6	0	Domain	of	unknown	function
Spc7	PF08317.11	gi|298676224|ref|YP_003727973.1|	-	3.9e-06	26.0	74.7	0.013	14.4	24.1	3.9	2	2	2	4	4	4	4	Spc7	kinetochore	protein
AAA_13	PF13166.6	gi|298676224|ref|YP_003727973.1|	-	1.2e-05	24.2	73.8	8.7e-05	21.4	34.1	2.3	1	1	1	2	2	2	2	AAA	domain
AAA_23	PF13476.6	gi|298676224|ref|YP_003727973.1|	-	0.00049	20.7	100.6	0.0027	18.2	45.6	4.7	1	1	2	3	3	2	1	AAA	domain
OmpH	PF03938.14	gi|298676224|ref|YP_003727973.1|	-	0.015	15.6	76.1	0.23	11.8	12.9	4.4	2	2	2	4	4	4	0	Outer	membrane	protein	(OmpH-like)
Spore_III_AB	PF09548.10	gi|298676224|ref|YP_003727973.1|	-	0.02	15.0	0.9	0.02	15.0	0.9	4.7	3	2	1	4	4	4	0	Stage	III	sporulation	protein	AB	(spore_III_AB)
ERM	PF00769.19	gi|298676224|ref|YP_003727973.1|	-	0.28	11.0	51.7	0.19	11.5	15.5	2.4	2	0	0	2	2	2	0	Ezrin/radixin/moesin	family
UPF0242	PF06785.11	gi|298676224|ref|YP_003727973.1|	-	0.4	10.8	84.2	1.1	9.3	13.5	4.5	2	2	2	4	4	4	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
T3SSipB	PF16535.5	gi|298676224|ref|YP_003727973.1|	-	0.43	11.0	41.9	0.14	12.7	8.9	4.9	1	1	4	5	5	5	0	Type	III	cell	invasion	protein	SipB
TMF_TATA_bd	PF12325.8	gi|298676224|ref|YP_003727973.1|	-	1.6	9.0	65.7	0.5	10.6	14.9	5.0	1	1	4	5	5	5	0	TATA	element	modulatory	factor	1	TATA	binding
Fez1	PF06818.15	gi|298676224|ref|YP_003727973.1|	-	1.6	9.1	64.9	0.35	11.3	24.0	3.9	2	2	2	4	4	4	0	Fez1
TACC_C	PF05010.14	gi|298676224|ref|YP_003727973.1|	-	2.6	7.8	70.5	0.027	14.3	31.3	3.5	2	2	0	2	2	2	0	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
HOOK	PF05622.12	gi|298676224|ref|YP_003727973.1|	-	2.9	5.9	76.1	0.68	8.0	36.0	2.1	1	1	0	2	2	2	0	HOOK	protein
FliJ	PF02050.16	gi|298676224|ref|YP_003727973.1|	-	3.8	7.8	50.7	0.049	13.9	4.9	5.1	2	2	2	4	4	4	0	Flagellar	FliJ	protein
Fmp27_WPPW	PF10359.9	gi|298676224|ref|YP_003727973.1|	-	4.1	6.1	68.3	0.16	10.8	11.9	4.2	1	1	3	4	4	4	0	RNA	pol	II	promoter	Fmp27	protein	domain
GAS	PF13851.6	gi|298676224|ref|YP_003727973.1|	-	4.3	6.6	84.1	0.69	9.2	23.2	3.9	2	2	1	3	3	3	0	Growth-arrest	specific	micro-tubule	binding
MHB	PF16525.5	gi|298676224|ref|YP_003727973.1|	-	4.5	7.6	7.0	1.6	9.0	0.5	3.3	3	0	0	3	3	3	0	Haemophore,	haem-binding
Laminin_II	PF06009.12	gi|298676224|ref|YP_003727973.1|	-	9.3	6.3	62.3	2.5	8.1	11.3	5.1	2	2	4	6	6	5	0	Laminin	Domain	II
LTXXQ	PF07813.12	gi|298676224|ref|YP_003727973.1|	-	9.7	7.0	10.2	1.2	9.9	1.2	3.2	2	2	1	3	3	3	0	LTXXQ	motif	family	protein
DUF4373	PF14297.6	gi|298676225|ref|YP_003727974.1|	-	0.024	15.4	0.6	0.22	12.3	0.0	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4373)
HTH_45	PF14947.6	gi|298676226|ref|YP_003727975.1|	-	2.7e-06	27.3	2.0	0.0012	18.8	0.1	2.3	2	0	0	2	2	2	2	Winged	helix-turn-helix
DUF2250	PF10007.9	gi|298676226|ref|YP_003727975.1|	-	0.0033	17.5	0.1	2.5	8.3	0.0	2.3	1	1	1	2	2	2	2	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_54	PF18607.1	gi|298676226|ref|YP_003727975.1|	-	0.01	15.9	0.1	0.73	9.9	0.1	2.2	1	1	1	2	2	2	0	ParA	helix	turn	helix	domain
DUF4835	PF16119.5	gi|298676226|ref|YP_003727975.1|	-	0.027	13.6	0.2	0.036	13.2	0.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4835)
OrfB_IS605	PF01385.19	gi|298676228|ref|YP_003727977.1|	-	2.3e-27	95.6	2.1	5.1e-27	94.5	2.1	1.5	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|298676228|ref|YP_003727977.1|	-	5.4e-24	83.9	0.4	1.1e-23	82.9	0.4	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.8	gi|298676228|ref|YP_003727977.1|	-	1.9e-19	68.9	1.4	4e-19	67.8	1.4	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
zf-piccolo	PF05715.13	gi|298676228|ref|YP_003727977.1|	-	0.0071	16.5	0.3	0.019	15.1	0.3	1.7	1	0	0	1	1	1	1	Piccolo	Zn-finger
LemA	PF04011.12	gi|298676228|ref|YP_003727977.1|	-	0.031	14.1	0.9	0.4	10.5	0.2	2.2	2	0	0	2	2	2	0	LemA	family
Phage_GP20	PF06810.11	gi|298676228|ref|YP_003727977.1|	-	0.036	13.9	6.7	0.21	11.4	1.3	2.7	3	0	0	3	3	3	0	Phage	minor	structural	protein	GP20
HypA	PF01155.19	gi|298676228|ref|YP_003727977.1|	-	0.37	10.8	1.8	1.3	9.1	0.8	2.2	2	1	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
MapZ_EC1	PF18041.1	gi|298676228|ref|YP_003727977.1|	-	0.59	10.4	8.1	0.22	11.8	2.0	2.4	2	0	0	2	2	2	0	MapZ	extracellular	domain	1
Big_3_3	PF13750.6	gi|298676229|ref|YP_003727978.1|	-	8.5e-05	22.3	37.7	0.00013	21.7	1.7	6.6	4	2	2	7	7	7	4	Bacterial	Ig-like	domain	(group	3)
DUF4625	PF15418.6	gi|298676229|ref|YP_003727978.1|	-	0.00058	20.1	31.0	0.093	13.0	0.8	7.0	4	1	4	8	8	8	4	Domain	of	unknown	function	(DUF4625)
Y_Y_Y	PF07495.13	gi|298676229|ref|YP_003727978.1|	-	0.22	11.5	9.1	0.41	10.6	0.3	4.6	3	0	0	3	3	3	0	Y_Y_Y	domain
Gram_pos_anchor	PF00746.21	gi|298676230|ref|YP_003727979.1|	-	0.0003	20.6	0.2	0.00065	19.6	0.2	1.6	1	0	0	1	1	1	1	LPXTG	cell	wall	anchor	motif
CarboxypepD_reg	PF13620.6	gi|298676230|ref|YP_003727979.1|	-	0.00086	19.5	0.8	0.00086	19.5	0.8	2.3	2	0	0	2	2	2	1	Carboxypeptidase	regulatory-like	domain
Big_1	PF02369.16	gi|298676230|ref|YP_003727979.1|	-	0.0056	16.7	0.2	0.0056	16.7	0.2	3.2	4	0	0	4	4	4	1	Bacterial	Ig-like	domain	(group	1)
MG4	PF17789.1	gi|298676230|ref|YP_003727979.1|	-	0.0091	16.1	1.6	1.9	8.7	0.2	2.8	2	0	0	2	2	2	2	Macroglobulin	domain	MG4
SEP	PF08059.13	gi|298676230|ref|YP_003727979.1|	-	0.047	14.3	2.0	0.25	11.9	0.6	2.5	2	1	0	2	2	2	0	SEP	domain
DUF617	PF04759.13	gi|298676230|ref|YP_003727979.1|	-	0.13	12.3	0.2	1.2	9.2	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF617
ABC2_membrane_3	PF12698.7	gi|298676230|ref|YP_003727979.1|	-	0.14	11.3	2.7	0.33	10.0	2.7	1.6	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
TTR-52	PF01060.23	gi|298676230|ref|YP_003727979.1|	-	0.74	10.6	3.7	1.6	9.4	0.2	2.8	3	0	0	3	3	3	0	Transthyretin-like	family
Glyco_hydro2_C5	PF18565.1	gi|298676230|ref|YP_003727979.1|	-	2.5	8.0	5.8	13	5.7	0.0	3.2	4	0	0	4	4	4	0	Glycoside	hydrolase	family	2	C-terminal	domain	5
Pilin_N	PF07790.11	gi|298676230|ref|YP_003727979.1|	-	4.5	8.3	6.3	2.2	9.3	0.3	3.0	2	1	1	3	3	3	0	Archaeal	Type	IV	pilin,	N-terminal
TrmB	PF01978.19	gi|298676231|ref|YP_003727980.1|	-	9.2e-06	25.5	0.0	1.5e-05	24.8	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|298676231|ref|YP_003727980.1|	-	3e-05	23.8	0.0	4.5e-05	23.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|298676231|ref|YP_003727980.1|	-	4.2e-05	23.4	0.1	7.8e-05	22.5	0.0	1.5	1	1	0	1	1	1	1	MarR	family
SMC_ScpB	PF04079.16	gi|298676231|ref|YP_003727980.1|	-	0.00082	19.0	0.1	0.0012	18.5	0.1	1.2	1	0	0	1	1	1	1	Segregation	and	condensation	complex	subunit	ScpB
HTH_36	PF13730.6	gi|298676231|ref|YP_003727980.1|	-	0.0072	16.3	0.1	0.011	15.7	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF327	PF03885.13	gi|298676231|ref|YP_003727980.1|	-	0.016	15.2	0.1	0.02	14.9	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF327)
Phage_rep_O	PF04492.13	gi|298676231|ref|YP_003727980.1|	-	0.022	15.3	0.1	0.036	14.7	0.1	1.3	1	0	0	1	1	1	0	Bacteriophage	replication	protein	O
HTH_37	PF13744.6	gi|298676231|ref|YP_003727980.1|	-	0.046	13.7	0.1	0.11	12.5	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF2582	PF10771.9	gi|298676231|ref|YP_003727980.1|	-	0.1	12.8	0.2	0.41	10.8	0.1	2.0	1	1	1	2	2	2	0	Winged	helix-turn-helix	domain	(DUF2582)
AAA_22	PF13401.6	gi|298676232|ref|YP_003727981.1|	-	1.4e-13	51.3	0.1	5.2e-13	49.4	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|298676232|ref|YP_003727981.1|	-	7.2e-06	26.5	0.3	0.00015	22.2	0.0	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
ATPase_2	PF01637.18	gi|298676232|ref|YP_003727981.1|	-	0.0011	18.9	0.8	0.015	15.2	0.5	2.7	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_19	PF13245.6	gi|298676232|ref|YP_003727981.1|	-	0.007	16.7	0.1	0.036	14.4	0.0	2.1	2	1	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|298676232|ref|YP_003727981.1|	-	0.01	16.3	0.6	0.025	15.0	0.1	1.9	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SNF2_N	PF00176.23	gi|298676232|ref|YP_003727981.1|	-	0.011	14.5	0.1	0.017	13.9	0.1	1.2	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
NB-ARC	PF00931.22	gi|298676232|ref|YP_003727981.1|	-	0.012	14.8	1.2	2.7	7.1	0.1	2.5	2	1	0	2	2	2	0	NB-ARC	domain
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanohalobium_evestigatum_Z_7303_uid49857/NC_014254.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanohalobium_evestigatum_Z_7303_uid49857/NC_014254.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanohalobium_evestigatum_Z_7303_uid49857/NC_014254.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanohalobium_evestigatum_Z_7303_uid49857/NC_014254.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 15:44:28 2019
# [ok]