# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|126177953|ref|YP_001045918.1| - 1.3e-20 73.1 0.1 3.1e-20 71.9 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|126177953|ref|YP_001045918.1| - 2e-11 44.3 0.0 5.1e-11 43.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|126177953|ref|YP_001045918.1| - 2.7e-09 37.6 0.0 1.8e-08 34.9 0.0 2.3 2 2 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|126177953|ref|YP_001045918.1| - 7.6e-09 36.1 0.5 4.1e-08 33.7 0.1 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|126177953|ref|YP_001045918.1| - 0.00033 20.1 0.1 0.0036 16.7 0.0 2.4 2 1 0 2 2 2 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|126177953|ref|YP_001045918.1| - 0.00036 20.5 0.3 0.0014 18.6 0.1 2.0 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|126177953|ref|YP_001045918.1| - 0.0055 15.9 0.0 0.01 15.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|126177953|ref|YP_001045918.1| - 0.01 15.6 0.1 0.034 13.9 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain DEAD PF00270.29 gi|126177953|ref|YP_001045918.1| - 0.013 15.3 2.5 0.048 13.4 0.8 2.4 2 1 0 2 2 2 0 DEAD/DEAH box helicase KAP_NTPase PF07693.14 gi|126177953|ref|YP_001045918.1| - 0.02 14.1 0.2 2.8 7.1 0.0 2.2 1 1 1 2 2 2 0 KAP family P-loop domain AAA_2 PF07724.14 gi|126177953|ref|YP_001045918.1| - 0.024 14.8 0.0 0.097 12.8 0.0 1.9 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) NACHT PF05729.12 gi|126177953|ref|YP_001045918.1| - 0.026 14.4 0.0 0.053 13.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|126177953|ref|YP_001045918.1| - 0.056 13.2 0.1 0.12 12.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain Microtub_bd PF16796.5 gi|126177953|ref|YP_001045918.1| - 0.063 13.2 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Microtubule binding AAA_7 PF12775.7 gi|126177953|ref|YP_001045918.1| - 0.069 12.7 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AsnC_trans_reg PF01037.21 gi|126177954|ref|YP_001045919.1| - 6.1e-14 51.8 0.0 9.6e-14 51.1 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|126177954|ref|YP_001045919.1| - 7e-12 45.0 0.5 2.6e-11 43.2 0.5 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|126177954|ref|YP_001045919.1| - 6.6e-06 25.6 0.1 1.5e-05 24.4 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Aminotran_1_2 PF00155.21 gi|126177955|ref|YP_001045920.1| - 3.4e-65 220.6 0.0 3.9e-65 220.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|126177955|ref|YP_001045920.1| - 6e-07 29.1 0.0 9.2e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|126177955|ref|YP_001045920.1| - 2.6e-05 23.4 0.0 4.1e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|126177955|ref|YP_001045920.1| - 0.00099 17.7 0.0 0.0014 17.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.20 gi|126177955|ref|YP_001045920.1| - 0.0065 15.3 0.0 0.0085 14.9 0.0 1.1 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Beta_elim_lyase PF01212.21 gi|126177955|ref|YP_001045920.1| - 0.18 11.1 0.0 0.28 10.4 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Adenylsucc_synt PF00709.21 gi|126177957|ref|YP_001045922.1| - 2.2e-78 264.0 3.9 1.7e-38 132.7 0.1 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Trm112p PF03966.16 gi|126177958|ref|YP_001045923.1| - 3.1e-09 37.3 1.3 7.6e-09 36.0 1.3 1.6 1 1 0 1 1 1 1 Trm112p-like protein Elf1 PF05129.13 gi|126177958|ref|YP_001045923.1| - 0.0034 17.4 0.1 0.0037 17.3 0.1 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Zn_Tnp_IS1595 PF12760.7 gi|126177958|ref|YP_001045923.1| - 0.011 15.6 0.2 0.016 15.1 0.2 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|126177958|ref|YP_001045923.1| - 0.018 15.4 1.9 0.018 15.4 1.9 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar Sarcolipin PF05366.11 gi|126177959|ref|YP_001045924.1| - 0.19 11.5 0.0 0.19 11.5 0.0 1.7 2 0 0 2 2 2 0 Sarcolipin CobD_Cbib PF03186.13 gi|126177960|ref|YP_001045925.1| - 3.1e-82 275.9 3.0 4e-82 275.5 3.0 1.1 1 0 0 1 1 1 1 CobD/Cbib protein SOR_SNZ PF01680.17 gi|126177961|ref|YP_001045926.1| - 2.3e-104 347.7 7.9 2.3e-104 347.7 7.9 1.6 2 0 0 2 2 2 1 SOR/SNZ family ThiG PF05690.14 gi|126177961|ref|YP_001045926.1| - 6.8e-10 38.7 8.1 1.4e-06 27.8 1.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|126177961|ref|YP_001045926.1| - 0.00062 19.0 0.0 0.049 12.8 0.0 2.3 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase Dus PF01207.17 gi|126177961|ref|YP_001045926.1| - 0.0019 17.3 0.7 0.5 9.4 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|126177961|ref|YP_001045926.1| - 0.0072 15.7 0.5 0.0072 15.7 0.5 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase OMPdecase PF00215.24 gi|126177961|ref|YP_001045926.1| - 0.0073 15.9 0.1 0.46 10.0 0.0 2.4 1 1 1 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.14 gi|126177961|ref|YP_001045926.1| - 0.015 14.5 2.1 0.065 12.4 0.0 2.5 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.21 gi|126177961|ref|YP_001045926.1| - 0.025 14.1 0.7 0.26 10.7 0.0 2.3 2 0 0 2 2 2 0 Histidine biosynthesis protein TetR_C_27 PF17935.1 gi|126177961|ref|YP_001045926.1| - 0.031 14.3 0.0 0.066 13.3 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain SNO PF01174.19 gi|126177962|ref|YP_001045927.1| - 2.9e-49 167.5 0.0 3.2e-49 167.3 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|126177962|ref|YP_001045927.1| - 0.00072 19.2 0.0 0.0009 18.9 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain HTH_5 PF01022.20 gi|126177963|ref|YP_001045928.1| - 8.9e-15 54.3 0.3 1.4e-14 53.6 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|126177963|ref|YP_001045928.1| - 2.7e-14 53.0 0.2 4.6e-14 52.2 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|126177963|ref|YP_001045928.1| - 6.9e-06 26.2 0.0 1.2e-05 25.4 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|126177963|ref|YP_001045928.1| - 0.011 15.6 0.1 0.024 14.5 0.1 1.6 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 gi|126177963|ref|YP_001045928.1| - 0.046 13.3 0.1 0.42 10.2 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding PaaX PF07848.12 gi|126177963|ref|YP_001045928.1| - 0.051 13.8 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 PaaX-like protein HTH_27 PF13463.6 gi|126177963|ref|YP_001045928.1| - 0.16 12.5 0.0 0.3 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain TauE PF01925.19 gi|126177964|ref|YP_001045929.1| - 3.7e-44 151.1 42.8 3.7e-44 151.1 42.8 1.7 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2231 PF09990.9 gi|126177964|ref|YP_001045929.1| - 0.047 14.1 3.6 0.047 14.1 3.6 3.4 3 1 0 3 3 3 0 Predicted membrane protein (DUF2231) HTH_20 PF12840.7 gi|126177965|ref|YP_001045930.1| - 1.8e-11 43.9 0.1 3.8e-11 42.9 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|126177965|ref|YP_001045930.1| - 1.9e-11 43.7 0.1 3.5e-11 42.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 gi|126177965|ref|YP_001045930.1| - 6.3e-05 23.1 0.0 0.00011 22.2 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain PaaX PF07848.12 gi|126177965|ref|YP_001045930.1| - 0.1 12.8 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein ArsP_1 PF03773.13 gi|126177967|ref|YP_001045932.1| - 1.9e-50 171.7 21.5 2.3e-50 171.4 21.5 1.1 1 0 0 1 1 1 1 Predicted permease ArsP_1 PF03773.13 gi|126177968|ref|YP_001045933.1| - 2.3e-76 256.8 22.8 2.6e-76 256.6 22.8 1.0 1 0 0 1 1 1 1 Predicted permease YrhK PF14145.6 gi|126177968|ref|YP_001045933.1| - 0.13 12.2 9.3 0.11 12.4 1.3 4.0 3 2 0 3 3 3 0 YrhK-like protein Flp1_like PF16982.5 gi|126177968|ref|YP_001045933.1| - 1 8.8 3.5 6 6.3 0.2 3.3 3 0 0 3 3 3 0 Putative Flagellin, Flp1-like, domain Thioredoxin_3 PF13192.6 gi|126177970|ref|YP_001045935.1| - 1e-26 92.8 0.7 1.1e-26 92.7 0.7 1.0 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin PF00085.20 gi|126177970|ref|YP_001045935.1| - 0.0093 15.9 0.0 0.0093 15.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.24 gi|126177970|ref|YP_001045935.1| - 0.041 14.1 0.6 0.091 13.0 0.4 1.8 1 1 0 1 1 1 0 Glutaredoxin Thioredoxin_4 PF13462.6 gi|126177970|ref|YP_001045935.1| - 0.1 12.7 0.1 3.5 7.8 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin Thioredoxin_3 PF13192.6 gi|126177971|ref|YP_001045936.1| - 4.9e-21 74.6 0.3 5.4e-21 74.4 0.3 1.0 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin PF00085.20 gi|126177971|ref|YP_001045936.1| - 0.031 14.3 0.0 0.033 14.2 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin Glutaredoxin PF00462.24 gi|126177971|ref|YP_001045936.1| - 0.08 13.2 0.1 0.19 11.9 0.1 1.7 1 1 0 1 1 1 0 Glutaredoxin Thioredoxin_4 PF13462.6 gi|126177971|ref|YP_001045936.1| - 0.12 12.6 0.0 4.2 7.5 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin DUF2703 PF10865.8 gi|126177972|ref|YP_001045937.1| - 1.4e-38 131.8 1.5 2.3e-38 131.0 1.5 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF2703) DGC PF08859.11 gi|126177972|ref|YP_001045937.1| - 1.9e-33 114.7 2.1 1.9e-33 114.7 2.1 1.8 2 0 0 2 2 2 1 DGC domain FeoC PF09012.10 gi|126177972|ref|YP_001045937.1| - 0.13 12.3 0.5 0.13 12.3 0.5 2.6 3 0 0 3 3 3 0 FeoC like transcriptional regulator ABC_tran PF00005.27 gi|126177973|ref|YP_001045938.1| - 1.8e-28 99.7 0.0 2.8e-28 99.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126177973|ref|YP_001045938.1| - 1.9e-11 44.3 0.4 3.3e-08 33.7 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|126177973|ref|YP_001045938.1| - 0.00028 21.5 0.0 0.00063 20.4 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_13 PF13166.6 gi|126177973|ref|YP_001045938.1| - 0.0004 19.2 0.1 0.12 10.9 0.0 2.0 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.19 gi|126177973|ref|YP_001045938.1| - 0.0067 15.9 0.0 0.17 11.3 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|126177973|ref|YP_001045938.1| - 0.021 15.4 0.0 0.027 15.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|126177973|ref|YP_001045938.1| - 0.034 14.6 0.0 0.12 12.8 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|126177973|ref|YP_001045938.1| - 0.036 13.8 0.1 0.2 11.4 0.1 2.0 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|126177973|ref|YP_001045938.1| - 0.11 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.6 gi|126177973|ref|YP_001045938.1| - 0.13 12.5 0.0 0.32 11.3 0.0 1.8 2 0 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|126177973|ref|YP_001045938.1| - 0.31 10.7 0.0 14 5.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ABC2_membrane PF01061.24 gi|126177974|ref|YP_001045939.1| - 7.3e-20 71.3 19.6 7.3e-20 71.3 19.6 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|126177974|ref|YP_001045939.1| - 5.4e-06 25.8 25.7 5.4e-06 25.8 25.7 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|126177974|ref|YP_001045939.1| - 0.00062 19.1 25.7 0.0086 15.4 20.7 2.4 1 1 1 2 2 2 2 ABC-2 family transporter protein DUF2703 PF10865.8 gi|126177975|ref|YP_001045940.1| - 1.2e-32 112.6 0.2 1.4e-32 112.4 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF2703) RACo_C_ter PF14574.6 gi|126177975|ref|YP_001045940.1| - 0.093 11.8 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 C-terminal domain of RACo the ASKHA domain Peripla_BP_2 PF01497.18 gi|126177976|ref|YP_001045941.1| - 1.1e-27 97.1 0.0 1.4e-27 96.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Methyltransf_11 PF08241.12 gi|126177977|ref|YP_001045942.1| - 1.9e-20 73.3 0.0 2.8e-20 72.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126177977|ref|YP_001045942.1| - 4.1e-20 72.3 0.0 6.3e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126177977|ref|YP_001045942.1| - 7.8e-15 55.0 0.0 9.9e-15 54.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|126177977|ref|YP_001045942.1| - 8.6e-10 38.7 0.0 1.1e-09 38.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126177977|ref|YP_001045942.1| - 6.9e-09 36.3 0.0 1.2e-08 35.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|126177977|ref|YP_001045942.1| - 1.1e-08 34.7 0.0 1.4e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|126177977|ref|YP_001045942.1| - 2.5e-05 23.9 0.0 3.9e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|126177977|ref|YP_001045942.1| - 0.00022 21.1 0.0 0.00036 20.5 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Cons_hypoth95 PF03602.15 gi|126177977|ref|YP_001045942.1| - 0.0009 18.9 0.0 0.0014 18.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 GidB PF02527.15 gi|126177977|ref|YP_001045942.1| - 0.00099 18.5 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_18 PF12847.7 gi|126177977|ref|YP_001045942.1| - 0.0086 16.0 0.0 0.013 15.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|126177977|ref|YP_001045942.1| - 0.0087 15.8 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase UPF0020 PF01170.18 gi|126177977|ref|YP_001045942.1| - 0.01 15.5 0.0 0.067 12.9 0.0 2.2 2 1 1 3 3 3 0 Putative RNA methylase family UPF0020 PrmA PF06325.13 gi|126177977|ref|YP_001045942.1| - 0.013 14.9 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_29 PF03141.16 gi|126177977|ref|YP_001045942.1| - 0.047 12.2 0.0 0.056 12.0 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_24 PF13578.6 gi|126177977|ref|YP_001045942.1| - 0.063 14.3 0.0 0.12 13.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Peripla_BP_2 PF01497.18 gi|126177978|ref|YP_001045943.1| - 3.5e-06 26.7 0.0 6.2e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein ABC_tran PF00005.27 gi|126177979|ref|YP_001045944.1| - 5.1e-32 111.3 0.0 6.7e-32 110.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126177979|ref|YP_001045944.1| - 1.5e-10 41.4 0.7 6.8e-05 22.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126177979|ref|YP_001045944.1| - 1.4e-06 27.9 0.1 0.0085 15.5 0.0 2.2 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|126177979|ref|YP_001045944.1| - 0.0001 22.2 0.2 0.11 12.1 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|126177979|ref|YP_001045944.1| - 0.00035 21.0 0.0 0.089 13.2 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|126177979|ref|YP_001045944.1| - 0.0006 19.5 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|126177979|ref|YP_001045944.1| - 0.00082 19.8 0.0 0.0013 19.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|126177979|ref|YP_001045944.1| - 0.0014 18.6 0.1 0.003 17.5 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase NB-ARC PF00931.22 gi|126177979|ref|YP_001045944.1| - 0.0033 16.6 0.1 0.14 11.3 0.0 2.1 2 0 0 2 2 2 1 NB-ARC domain AAA_23 PF13476.6 gi|126177979|ref|YP_001045944.1| - 0.0061 17.1 0.0 0.015 15.8 0.1 1.6 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|126177979|ref|YP_001045944.1| - 0.015 15.2 0.0 0.039 13.9 0.0 1.6 1 0 0 1 1 1 0 NTPase AAA_30 PF13604.6 gi|126177979|ref|YP_001045944.1| - 0.023 14.4 0.0 0.053 13.2 0.0 1.5 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|126177979|ref|YP_001045944.1| - 0.026 13.3 0.3 2 7.1 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class DUF815 PF05673.13 gi|126177979|ref|YP_001045944.1| - 0.04 13.1 0.0 0.062 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|126177979|ref|YP_001045944.1| - 0.044 14.1 0.1 0.59 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|126177979|ref|YP_001045944.1| - 0.046 14.0 0.1 0.58 10.4 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit GTP_EFTU PF00009.27 gi|126177979|ref|YP_001045944.1| - 0.12 11.9 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_19 PF13245.6 gi|126177979|ref|YP_001045944.1| - 0.16 12.3 0.1 0.28 11.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|126177979|ref|YP_001045944.1| - 0.17 11.1 0.0 0.27 10.3 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase FecCD PF01032.18 gi|126177980|ref|YP_001045945.1| - 7.5e-87 291.2 31.4 1.1e-86 290.7 31.4 1.2 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|126177980|ref|YP_001045945.1| - 5.6e-07 29.3 16.1 5.6e-07 29.3 16.1 1.6 2 0 0 2 2 2 1 ABC 3 transport family Methyltransf_17 PF12692.7 gi|126177980|ref|YP_001045945.1| - 0.1 12.6 0.0 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 S-adenosyl-L-methionine methyltransferase SPT_ssu-like PF11779.8 gi|126177980|ref|YP_001045945.1| - 0.13 11.8 0.7 1.9 8.2 0.0 2.9 2 0 0 2 2 2 0 Small subunit of serine palmitoyltransferase-like Mersacidin PF16934.5 gi|126177980|ref|YP_001045945.1| - 0.78 9.6 7.6 0.057 13.2 1.7 2.2 2 0 0 2 2 2 0 Two-component Enterococcus faecalis cytolysin (EFC) Peripla_BP_2 PF01497.18 gi|126177981|ref|YP_001045946.1| - 1.1e-36 126.6 0.0 1.4e-36 126.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Methyltransf_2 PF00891.18 gi|126177982|ref|YP_001045947.1| - 6.1e-15 55.1 0.0 9e-15 54.5 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_23 PF13489.6 gi|126177982|ref|YP_001045947.1| - 1.6e-08 34.6 0.0 2.8e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Dimerisation2 PF16864.5 gi|126177982|ref|YP_001045947.1| - 2.1e-07 30.8 0.0 3.5e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Dimerisation domain Methyltransf_12 PF08242.12 gi|126177982|ref|YP_001045947.1| - 2.3e-07 31.4 0.0 4.6e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126177982|ref|YP_001045947.1| - 0.00012 22.7 0.0 0.00032 21.3 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126177982|ref|YP_001045947.1| - 0.0012 19.5 0.2 0.0038 17.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126177982|ref|YP_001045947.1| - 0.0051 16.6 0.0 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|126177982|ref|YP_001045947.1| - 0.028 14.2 0.0 0.047 13.4 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase MTS PF05175.14 gi|126177982|ref|YP_001045947.1| - 0.032 13.8 0.1 0.07 12.7 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase small domain NodS PF05401.11 gi|126177982|ref|YP_001045947.1| - 0.21 11.2 0.0 0.34 10.5 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) DUF364 PF04016.12 gi|126177983|ref|YP_001045948.1| - 3.4e-49 166.2 0.0 4.5e-49 165.8 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|126177983|ref|YP_001045948.1| - 1.5e-14 54.0 0.0 2.7e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 Putative heavy-metal chelation Methyltransf_25 PF13649.6 gi|126177984|ref|YP_001045949.1| - 4.4e-16 59.4 0.1 1.2e-15 58.0 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126177984|ref|YP_001045949.1| - 2.4e-12 47.4 0.0 5.3e-12 46.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126177984|ref|YP_001045949.1| - 8.8e-11 41.8 0.0 1.6e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126177984|ref|YP_001045949.1| - 7.1e-10 39.5 0.0 2.2e-09 38.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|126177984|ref|YP_001045949.1| - 7.4e-09 35.7 0.0 1.8e-08 34.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|126177984|ref|YP_001045949.1| - 4.4e-08 32.8 0.0 8.8e-08 31.9 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain TehB PF03848.14 gi|126177984|ref|YP_001045949.1| - 6.3e-08 32.3 0.0 1.4e-07 31.1 0.0 1.6 2 0 0 2 2 2 1 Tellurite resistance protein TehB NodS PF05401.11 gi|126177984|ref|YP_001045949.1| - 1e-05 25.3 0.0 1.4e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.20 gi|126177984|ref|YP_001045949.1| - 0.0001 21.7 0.0 0.00014 21.3 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 gi|126177984|ref|YP_001045949.1| - 0.0001 21.7 0.0 0.00016 21.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.13 gi|126177984|ref|YP_001045949.1| - 0.00017 21.1 0.0 0.00088 18.8 0.0 1.9 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.20 gi|126177984|ref|YP_001045949.1| - 0.00029 20.0 0.0 0.00041 19.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.7 gi|126177984|ref|YP_001045949.1| - 0.00042 20.3 0.0 0.00078 19.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|126177984|ref|YP_001045949.1| - 0.0031 17.5 0.0 0.0064 16.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|126177984|ref|YP_001045949.1| - 0.0083 16.3 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 FtsJ-like methyltransferase DBP10CT PF08147.12 gi|126177984|ref|YP_001045949.1| - 0.0092 16.2 0.0 0.023 14.9 0.0 1.6 1 0 0 1 1 1 1 DBP10CT (NUC160) domain GidB PF02527.15 gi|126177984|ref|YP_001045949.1| - 0.011 15.1 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G MetW PF07021.12 gi|126177984|ref|YP_001045949.1| - 0.026 14.1 0.0 0.042 13.5 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW DREV PF05219.12 gi|126177984|ref|YP_001045949.1| - 0.027 13.6 0.0 0.043 12.9 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_4 PF02390.17 gi|126177984|ref|YP_001045949.1| - 0.057 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_15 PF09445.10 gi|126177984|ref|YP_001045949.1| - 0.089 12.4 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|126177984|ref|YP_001045949.1| - 0.12 12.0 0.0 0.23 11.1 0.0 1.4 1 1 0 1 1 1 0 Conserved hypothetical protein 95 Peripla_BP_2 PF01497.18 gi|126177985|ref|YP_001045950.1| - 2.2e-20 73.3 0.0 3.6e-20 72.5 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein NTPase_1 PF03266.15 gi|126177986|ref|YP_001045951.1| - 1.8e-36 125.6 0.0 2.1e-36 125.4 0.0 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.9 gi|126177986|ref|YP_001045951.1| - 0.02 14.5 0.0 0.075 12.6 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2478) C_GCAxxG_C_C PF09719.10 gi|126177987|ref|YP_001045952.1| - 0.053 13.8 0.1 0.083 13.2 0.1 1.4 1 0 0 1 1 1 0 Putative redox-active protein (C_GCAxxG_C_C) UL11 PF11094.8 gi|126177987|ref|YP_001045952.1| - 0.67 9.9 2.4 2.1 8.3 0.0 2.5 3 0 0 3 3 3 0 Membrane-associated tegument protein Pro_isomerase PF00160.21 gi|126177988|ref|YP_001045953.1| - 9.1e-49 165.8 0.1 1e-48 165.6 0.1 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Ribonucleas_3_3 PF14622.6 gi|126177989|ref|YP_001045954.1| - 1.7e-21 76.7 0.0 2.1e-21 76.4 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.26 gi|126177989|ref|YP_001045954.1| - 6.9e-12 45.9 0.0 1.3e-11 45.0 0.0 1.5 1 1 0 1 1 1 1 Ribonuclease III domain MFS_1 PF07690.16 gi|126177990|ref|YP_001045955.1| - 3.6e-31 108.4 68.8 6.9e-19 68.0 35.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily ATG22 PF11700.8 gi|126177990|ref|YP_001045955.1| - 0.0023 16.6 4.4 0.024 13.3 0.6 2.7 2 0 0 2 2 2 2 Vacuole effluxer Atg22 like AMP-binding PF00501.28 gi|126177991|ref|YP_001045956.1| - 9.1e-97 324.3 0.1 1.2e-96 323.9 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|126177991|ref|YP_001045956.1| - 1.1e-26 93.6 1.1 1.6e-26 93.1 0.2 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|126177991|ref|YP_001045956.1| - 4.6e-18 64.9 2.9 1e-17 63.8 2.9 1.6 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus CobN-Mg_chel PF02514.16 gi|126177992|ref|YP_001045957.1| - 0 1022.9 0.0 0 1015.5 0.0 2.0 2 0 0 2 2 2 2 CobN/Magnesium Chelatase NPV_P10 PF05531.12 gi|126177992|ref|YP_001045957.1| - 0.18 12.3 0.0 13 6.3 0.0 3.5 4 0 0 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF2149 PF09919.9 gi|126177993|ref|YP_001045958.1| - 1.6e-34 118.0 0.2 1.8e-34 117.8 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) BcrAD_BadFG PF01869.20 gi|126177993|ref|YP_001045958.1| - 0.045 13.2 0.0 0.057 12.9 0.0 1.1 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family MotA_ExbB PF01618.16 gi|126177994|ref|YP_001045959.1| - 1.4e-11 44.2 0.2 2.1e-11 43.6 0.2 1.3 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family DUF2530 PF10745.9 gi|126177994|ref|YP_001045959.1| - 0.26 11.6 2.8 0.61 10.4 0.5 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2530) DUF2162 PF09930.9 gi|126177995|ref|YP_001045960.1| - 3.1e-58 196.8 17.4 3.5e-58 196.6 17.4 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) CPP1-like PF11833.8 gi|126177995|ref|YP_001045960.1| - 0.0088 15.7 12.9 0.083 12.5 3.1 2.4 2 0 0 2 2 2 2 Protein CHAPERONE-LIKE PROTEIN OF POR1-like AzlD PF05437.12 gi|126177995|ref|YP_001045960.1| - 0.011 15.9 0.6 0.011 15.9 0.6 3.0 2 1 2 4 4 4 0 Branched-chain amino acid transport protein (AzlD) DUF1035 PF06281.12 gi|126177995|ref|YP_001045960.1| - 0.023 14.7 0.1 0.11 12.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1035) EMP70 PF02990.16 gi|126177995|ref|YP_001045960.1| - 0.31 9.7 3.9 0.12 11.0 1.5 1.4 1 1 0 1 1 1 0 Endomembrane protein 70 SLATT_3 PF18184.1 gi|126177995|ref|YP_001045960.1| - 0.59 10.3 1.9 1.1 9.4 0.1 2.1 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 3 H_PPase PF03030.16 gi|126177996|ref|YP_001045961.1| - 3.4e-275 914.8 58.4 3.9e-275 914.6 58.4 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase DNA_pol_E_B PF04042.16 gi|126177997|ref|YP_001045962.1| - 2.1e-10 40.3 0.0 3.6e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|126177997|ref|YP_001045962.1| - 5.4e-10 40.1 0.0 8.8e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|126177997|ref|YP_001045962.1| - 2.6e-09 37.5 0.0 6.4e-09 36.2 0.0 1.7 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.25 gi|126177997|ref|YP_001045962.1| - 1.1e-05 25.3 0.0 2.5e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.7 gi|126177997|ref|YP_001045962.1| - 0.23 11.1 0.0 0.39 10.3 0.0 1.3 1 0 0 1 1 1 0 tRNA_anti-like Peptidase_S24 PF00717.23 gi|126177998|ref|YP_001045963.1| - 0.00078 19.4 0.1 0.0016 18.4 0.1 1.5 1 0 0 1 1 1 1 Peptidase S24-like Radical_SAM PF04055.21 gi|126177999|ref|YP_001045964.1| - 3.4e-13 50.3 0.5 6.1e-13 49.5 0.1 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Radical_SAM PF04055.21 gi|126178000|ref|YP_001045965.1| - 1.4e-09 38.6 0.2 2.8e-09 37.6 0.2 1.5 1 0 0 1 1 1 1 Radical SAM superfamily DUF1328 PF07043.13 gi|126178001|ref|YP_001045966.1| - 1.1e-12 47.9 17.5 1.6e-12 47.4 17.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) DUF3671 PF12420.8 gi|126178001|ref|YP_001045966.1| - 0.25 11.4 3.9 0.32 11.1 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function SecG PF03840.14 gi|126178001|ref|YP_001045966.1| - 0.29 11.2 14.7 1 9.5 4.4 2.1 1 1 1 2 2 2 0 Preprotein translocase SecG subunit DUF131 PF01998.17 gi|126178001|ref|YP_001045966.1| - 4.2 7.1 14.0 1.7 8.3 5.2 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF131 DUF2981 PF11200.8 gi|126178001|ref|YP_001045966.1| - 5.7 6.6 7.2 5.6 6.6 7.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2981) FMN_red PF03358.15 gi|126178002|ref|YP_001045967.1| - 6.2e-25 87.8 0.0 1e-24 87.1 0.0 1.3 1 1 1 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|126178002|ref|YP_001045967.1| - 4.8e-08 32.9 0.0 6.2e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|126178002|ref|YP_001045967.1| - 0.091 13.0 0.0 0.3 11.3 0.0 1.8 2 0 0 2 2 2 0 Flavodoxin domain DUF123 PF01986.16 gi|126178003|ref|YP_001045968.1| - 1.1e-29 102.8 0.0 4e-29 101.0 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function DUF123 Peptidase_C78 PF07910.13 gi|126178003|ref|YP_001045968.1| - 0.26 10.7 0.0 14 5.1 0.0 2.1 2 0 0 2 2 2 0 Peptidase family C78 Lactamase_B PF00753.27 gi|126178004|ref|YP_001045969.1| - 5e-19 69.1 4.6 8.7e-19 68.3 4.6 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|126178004|ref|YP_001045969.1| - 1.2e-06 28.1 1.3 3.1e-06 26.9 1.3 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|126178004|ref|YP_001045969.1| - 0.0088 15.9 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain ThiC_Rad_SAM PF01964.18 gi|126178005|ref|YP_001045970.1| - 2.1e-161 537.4 0.1 2.4e-161 537.2 0.1 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family LMWPc PF01451.21 gi|126178006|ref|YP_001045971.1| - 8.4e-13 48.9 0.0 1.1e-12 48.6 0.0 1.2 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase AIRC PF00731.20 gi|126178007|ref|YP_001045972.1| - 5.5e-47 159.1 1.2 6e-47 158.9 1.2 1.0 1 0 0 1 1 1 1 AIR carboxylase Aminotran_5 PF00266.19 gi|126178008|ref|YP_001045973.1| - 2e-34 119.2 0.0 2.6e-34 118.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DMRL_synthase PF00885.19 gi|126178009|ref|YP_001045974.1| - 1.4e-14 54.1 0.2 1.6e-14 53.9 0.2 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Glyoxalase_3 PF13468.6 gi|126178009|ref|YP_001045974.1| - 0.033 14.3 0.1 0.047 13.8 0.1 1.2 1 0 0 1 1 1 0 Glyoxalase-like domain DUF2325 PF10087.9 gi|126178009|ref|YP_001045974.1| - 0.075 13.2 0.1 0.1 12.7 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2325) ThiG PF05690.14 gi|126178009|ref|YP_001045974.1| - 0.086 12.1 0.2 0.16 11.3 0.1 1.4 1 1 0 1 1 1 0 Thiazole biosynthesis protein ThiG DMRL_synthase PF00885.19 gi|126178010|ref|YP_001045975.1| - 3.1e-33 114.6 0.5 3.4e-33 114.4 0.5 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.21 gi|126178011|ref|YP_001045976.1| - 1.7e-71 241.3 0.0 1.9e-71 241.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|126178011|ref|YP_001045976.1| - 0.00098 18.2 0.0 0.0015 17.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|126178011|ref|YP_001045976.1| - 0.0062 15.1 0.0 0.026 13.1 0.0 1.8 1 1 1 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme TPR_1 PF00515.28 gi|126178012|ref|YP_001045977.1| - 1.5e-133 429.8 44.7 6.8e-12 44.7 1.0 16.0 16 0 0 16 16 16 16 Tetratricopeptide repeat TPR_2 PF07719.17 gi|126178012|ref|YP_001045977.1| - 5.9e-114 363.3 54.5 7e-10 38.3 0.8 16.0 16 0 0 16 16 16 16 Tetratricopeptide repeat TPR_11 PF13414.6 gi|126178012|ref|YP_001045977.1| - 7.1e-97 316.9 42.9 5.4e-10 38.8 0.6 15.2 3 2 12 15 15 15 15 TPR repeat TPR_8 PF13181.6 gi|126178012|ref|YP_001045977.1| - 1.7e-95 305.4 20.0 1.1e-07 31.4 0.1 16.0 16 0 0 16 16 16 15 Tetratricopeptide repeat TPR_16 PF13432.6 gi|126178012|ref|YP_001045977.1| - 1.2e-74 246.6 39.2 3.2e-11 43.7 0.5 9.7 4 2 6 11 11 11 11 Tetratricopeptide repeat TPR_17 PF13431.6 gi|126178012|ref|YP_001045977.1| - 1.3e-70 228.9 35.8 6.2e-06 26.2 0.1 16.1 16 0 0 16 16 16 14 Tetratricopeptide repeat TPR_14 PF13428.6 gi|126178012|ref|YP_001045977.1| - 3.1e-63 205.0 45.6 6.2e-06 26.6 1.7 15.8 2 2 14 16 16 16 13 Tetratricopeptide repeat TPR_9 PF13371.6 gi|126178012|ref|YP_001045977.1| - 1.4e-57 191.7 45.2 1e-09 38.4 1.6 9.8 5 2 5 10 10 10 10 Tetratricopeptide repeat TPR_12 PF13424.6 gi|126178012|ref|YP_001045977.1| - 4.8e-54 180.6 45.6 7e-08 32.7 0.6 11.6 2 2 9 12 12 12 12 Tetratricopeptide repeat TPR_19 PF14559.6 gi|126178012|ref|YP_001045977.1| - 1.7e-50 169.4 26.5 2.6e-07 31.0 0.1 9.3 3 3 6 10 10 10 10 Tetratricopeptide repeat TPR_7 PF13176.6 gi|126178012|ref|YP_001045977.1| - 5.4e-43 141.9 43.2 0.00017 21.3 0.3 15.8 15 1 1 16 16 16 8 Tetratricopeptide repeat TPR_6 PF13174.6 gi|126178012|ref|YP_001045977.1| - 2.3e-35 118.9 26.6 0.00079 19.9 0.1 14.3 15 0 0 15 15 14 7 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|126178012|ref|YP_001045977.1| - 1.4e-31 108.5 34.4 8.2e-08 32.4 4.4 7.4 3 1 4 8 8 8 7 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|126178012|ref|YP_001045977.1| - 2.8e-15 55.6 54.7 0.03 14.2 0.3 14.2 14 1 1 15 15 15 4 Tetratricopeptide repeat TPR_15 PF13429.6 gi|126178012|ref|YP_001045977.1| - 7.5e-13 48.3 17.0 0.0051 16.1 2.9 8.4 1 1 6 8 8 8 4 Tetratricopeptide repeat BTAD PF03704.17 gi|126178012|ref|YP_001045977.1| - 3.2e-11 43.9 36.2 0.034 14.6 0.2 7.3 3 3 4 7 7 7 6 Bacterial transcriptional activator domain Fis1_TPR_C PF14853.6 gi|126178012|ref|YP_001045977.1| - 4.2e-11 42.7 31.9 0.012 15.7 0.1 11.7 8 3 4 12 12 12 2 Fis1 C-terminal tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|126178012|ref|YP_001045977.1| - 1.7e-10 41.0 1.6 0.0071 16.3 0.0 6.3 2 1 2 5 5 5 1 Putative TPR-like repeat PPR PF01535.20 gi|126178012|ref|YP_001045977.1| - 2.5e-08 33.6 11.4 1.1 9.6 0.1 9.9 11 0 0 11 11 9 1 PPR repeat DUF3856 PF12968.7 gi|126178012|ref|YP_001045977.1| - 4e-08 33.4 13.4 0.24 11.5 0.1 9.6 2 2 8 10 10 10 1 Domain of Unknown Function (DUF3856) TPR_3 PF07720.12 gi|126178012|ref|YP_001045977.1| - 1e-07 31.8 15.2 9.3 6.4 0.2 9.5 11 0 0 11 11 10 0 Tetratricopeptide repeat TPR_20 PF14561.6 gi|126178012|ref|YP_001045977.1| - 1.7e-07 31.5 13.3 12 6.4 0.0 8.5 4 3 3 9 9 9 0 Tetratricopeptide repeat NARP1 PF12569.8 gi|126178012|ref|YP_001045977.1| - 6.3e-07 28.7 5.1 7.7 5.3 0.1 7.2 1 1 6 9 9 9 0 NMDA receptor-regulated protein 1 Paf67 PF10255.9 gi|126178012|ref|YP_001045977.1| - 1.6e-06 27.4 0.5 0.4 9.6 0.0 4.7 4 1 1 5 5 5 1 RNA polymerase I-associated factor PAF67 MIT PF04212.18 gi|126178012|ref|YP_001045977.1| - 5e-05 23.3 33.1 3.5 7.8 0.6 11.3 12 2 2 14 14 11 1 MIT (microtubule interacting and transport) domain DUF627 PF04781.12 gi|126178012|ref|YP_001045977.1| - 0.00014 21.8 0.8 9.9 6.2 0.1 6.1 5 2 1 7 7 7 0 Protein of unknown function (DUF627) Pyrid_ox_like PF16242.5 gi|126178012|ref|YP_001045977.1| - 0.00071 19.2 0.6 17 5.0 0.0 6.0 6 1 1 7 7 7 0 Pyridoxamine 5'-phosphate oxidase like Alkyl_sulf_dimr PF14863.6 gi|126178012|ref|YP_001045977.1| - 0.0011 19.4 4.8 13 6.2 0.1 6.1 5 3 0 6 6 6 0 Alkyl sulfatase dimerisation Coatomer_E PF04733.14 gi|126178012|ref|YP_001045977.1| - 0.0038 16.7 2.0 2.5 7.4 0.1 4.4 2 2 3 5 5 5 1 Coatomer epsilon subunit TAD2 PF18521.1 gi|126178012|ref|YP_001045977.1| - 0.0072 16.2 0.0 35 4.6 0.0 4.5 5 0 0 5 5 4 0 Transactivation domain 2 ChAPs PF09295.10 gi|126178012|ref|YP_001045977.1| - 0.016 14.2 1.8 13 4.6 0.0 4.6 4 2 1 6 6 6 0 ChAPs (Chs5p-Arf1p-binding proteins) RPN7 PF10602.9 gi|126178012|ref|YP_001045977.1| - 0.021 14.6 13.7 2.2 7.9 0.1 6.9 5 3 3 8 8 8 0 26S proteasome subunit RPN7 DNA_pol_lambd_f PF10391.9 gi|126178012|ref|YP_001045977.1| - 0.035 13.9 1.8 55 3.7 0.0 5.0 5 0 0 5 5 4 0 Fingers domain of DNA polymerase lambda PknG_TPR PF16918.5 gi|126178012|ref|YP_001045977.1| - 0.21 10.3 3.5 3 6.5 0.1 3.8 4 1 0 5 5 5 0 Protein kinase G tetratricopeptide repeat TPR_4 PF07721.14 gi|126178012|ref|YP_001045977.1| - 0.37 11.5 31.4 2.7 8.9 0.1 9.5 9 0 0 9 9 8 0 Tetratricopeptide repeat SPO22 PF08631.10 gi|126178012|ref|YP_001045977.1| - 0.49 9.8 2.9 4.8 6.6 0.3 3.8 4 1 1 5 5 5 0 Meiosis protein SPO22/ZIP4 like SNAP PF14938.6 gi|126178012|ref|YP_001045977.1| - 0.54 9.6 17.8 9.7 5.5 0.1 5.9 1 1 3 5 5 5 0 Soluble NSF attachment protein, SNAP PPR_2 PF13041.6 gi|126178012|ref|YP_001045977.1| - 1.2 9.4 6.8 63 3.9 0.2 5.2 6 0 0 6 6 5 0 PPR repeat family RadC PF04002.15 gi|126178013|ref|YP_001045978.1| - 2.7e-39 133.9 0.0 3.5e-39 133.5 0.0 1.1 1 0 0 1 1 1 1 RadC-like JAB domain Prok-JAB PF14464.6 gi|126178013|ref|YP_001045978.1| - 0.0018 18.0 0.0 0.0037 17.0 0.0 1.9 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain Yip1 PF04893.17 gi|126178014|ref|YP_001045979.1| - 5.3e-36 123.9 14.0 6.5e-36 123.6 14.0 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.12 gi|126178014|ref|YP_001045979.1| - 4.2e-07 29.9 8.0 5.6e-07 29.5 8.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) Pam17 PF08566.10 gi|126178014|ref|YP_001045979.1| - 0.12 12.2 1.9 0.14 12.0 0.4 1.8 2 1 0 2 2 2 0 Mitochondrial import protein Pam17 CARDB PF07705.11 gi|126178015|ref|YP_001045980.1| - 9.5e-10 38.7 0.2 2.8e-05 24.3 0.0 3.1 3 0 0 3 3 3 2 CARDB ASH PF15780.5 gi|126178015|ref|YP_001045980.1| - 6.8e-05 23.0 0.2 0.00059 20.0 0.1 2.4 2 0 0 2 2 2 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin DUF11 PF01345.18 gi|126178015|ref|YP_001045980.1| - 0.001 19.3 9.3 0.084 13.2 0.3 3.7 3 1 0 3 3 3 2 Domain of unknown function DUF11 ABC_tran PF00005.27 gi|126178016|ref|YP_001045981.1| - 4e-32 111.6 0.0 6e-32 111.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|126178016|ref|YP_001045981.1| - 2.1e-07 30.6 0.0 0.00083 18.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|126178016|ref|YP_001045981.1| - 2.9e-07 30.6 0.0 0.026 14.3 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|126178016|ref|YP_001045981.1| - 1.4e-05 24.7 0.2 2.7e-05 23.8 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|126178016|ref|YP_001045981.1| - 0.00039 20.1 0.5 0.037 13.6 0.1 2.5 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|126178016|ref|YP_001045981.1| - 0.0004 20.7 0.1 0.003 17.8 0.1 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|126178016|ref|YP_001045981.1| - 0.00042 20.2 0.0 0.00073 19.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|126178016|ref|YP_001045981.1| - 0.0027 18.1 0.2 0.0037 17.6 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 gi|126178016|ref|YP_001045981.1| - 0.0066 15.5 0.1 0.015 14.4 0.1 1.5 1 1 0 1 1 1 1 Type II/IV secretion system protein AAA_23 PF13476.6 gi|126178016|ref|YP_001045981.1| - 0.01 16.3 0.1 0.018 15.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|126178016|ref|YP_001045981.1| - 0.022 15.3 0.0 0.23 12.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|126178016|ref|YP_001045981.1| - 0.023 14.4 0.1 0.18 11.5 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|126178016|ref|YP_001045981.1| - 0.04 14.4 0.1 8.1 6.9 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|126178016|ref|YP_001045981.1| - 0.04 13.7 0.0 0.092 12.5 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein Rad17 PF03215.15 gi|126178016|ref|YP_001045981.1| - 0.051 13.5 0.0 0.08 12.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain FtsK_SpoIIIE PF01580.18 gi|126178016|ref|YP_001045981.1| - 0.067 12.5 0.2 0.16 11.3 0.1 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_28 PF13521.6 gi|126178016|ref|YP_001045981.1| - 0.071 13.4 0.3 0.2 11.9 0.0 1.8 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|126178016|ref|YP_001045981.1| - 0.075 13.1 1.2 0.15 12.1 0.7 2.1 1 1 1 2 2 2 0 50S ribosome-binding GTPase Mg_chelatase PF01078.21 gi|126178016|ref|YP_001045981.1| - 0.076 12.4 0.1 0.24 10.7 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|126178016|ref|YP_001045981.1| - 0.078 12.7 0.0 0.18 11.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.7 gi|126178016|ref|YP_001045981.1| - 0.098 11.6 0.0 6.8 5.5 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_7 PF12775.7 gi|126178016|ref|YP_001045981.1| - 0.11 12.1 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|126178016|ref|YP_001045981.1| - 0.14 12.3 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|126178016|ref|YP_001045981.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea MacB_PCD PF12704.7 gi|126178017|ref|YP_001045982.1| - 1.5e-23 84.2 2.9 1.5e-23 84.2 2.9 2.1 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|126178017|ref|YP_001045982.1| - 8.8e-13 48.6 1.9 8.8e-13 48.6 1.9 3.1 3 0 0 3 3 3 1 FtsX-like permease family Promethin PF16015.5 gi|126178017|ref|YP_001045982.1| - 0.064 13.2 0.4 0.064 13.2 0.4 1.9 2 0 0 2 2 2 0 Promethin EI24 PF07264.11 gi|126178017|ref|YP_001045982.1| - 0.64 10.2 5.4 0.4 10.9 2.8 2.0 2 1 0 2 2 2 0 Etoposide-induced protein 2.4 (EI24) DUF2953 PF11167.8 gi|126178019|ref|YP_001045984.1| - 1.6e-10 40.9 0.1 3e-10 40.0 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2953) Spore_YtfJ PF09579.10 gi|126178020|ref|YP_001045985.1| - 2.7e-14 53.1 6.2 3.7e-14 52.6 6.2 1.2 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) YdjM PF04307.14 gi|126178021|ref|YP_001045986.1| - 2.4e-21 75.8 7.7 2.4e-21 75.8 7.7 1.8 1 1 1 2 2 2 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|126178021|ref|YP_001045986.1| - 3.9e-05 23.7 0.3 4.6e-05 23.5 0.3 1.3 1 0 0 1 1 1 1 Zinc dependent phospholipase C DUF2938 PF11158.8 gi|126178021|ref|YP_001045986.1| - 0.12 11.8 7.2 1.5 8.2 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2938) PALP PF00291.25 gi|126178022|ref|YP_001045987.1| - 1.9e-44 152.3 0.2 2.3e-44 152.0 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Mt_ATP_synt PF15704.5 gi|126178022|ref|YP_001045987.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ATP synthase subunit Chorismate_bind PF00425.18 gi|126178023|ref|YP_001045988.1| - 1.2e-98 329.7 0.0 1.6e-98 329.4 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|126178023|ref|YP_001045988.1| - 1.6e-12 47.8 0.0 6e-11 42.7 0.0 2.5 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|126178024|ref|YP_001045989.1| - 4.1e-45 153.9 0.0 4.9e-45 153.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|126178024|ref|YP_001045989.1| - 3.2e-06 27.1 0.1 2.6e-05 24.1 0.1 2.1 1 1 0 1 1 1 1 Peptidase C26 Glycos_transf_3 PF00591.21 gi|126178025|ref|YP_001045990.1| - 6.9e-94 314.1 2.0 9.6e-94 313.7 2.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|126178025|ref|YP_001045990.1| - 9e-21 73.5 3.7 2.3e-20 72.2 3.7 1.7 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain IGPS PF00218.21 gi|126178026|ref|YP_001045991.1| - 1e-77 260.7 0.0 1.3e-77 260.5 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase PRAI PF00697.22 gi|126178027|ref|YP_001045992.1| - 4.2e-29 101.7 0.0 5e-29 101.5 0.0 1.1 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase MutL PF13941.6 gi|126178027|ref|YP_001045992.1| - 0.017 13.8 0.5 0.025 13.2 0.5 1.3 1 1 0 1 1 1 0 MutL protein UPF0180 PF03698.13 gi|126178027|ref|YP_001045992.1| - 0.14 12.3 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) PALP PF00291.25 gi|126178028|ref|YP_001045993.1| - 9.8e-47 159.8 1.9 1.1e-46 159.6 1.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Gmad2 PF10648.9 gi|126178028|ref|YP_001045993.1| - 0.07 13.4 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 Immunoglobulin-like domain of bacterial spore germination Trp_syntA PF00290.20 gi|126178029|ref|YP_001045994.1| - 2.9e-81 272.1 0.0 3.7e-81 271.8 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|126178029|ref|YP_001045994.1| - 4.5e-06 26.3 0.1 1.3e-05 24.8 0.0 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|126178029|ref|YP_001045994.1| - 0.00079 18.8 0.6 0.00079 18.8 0.6 1.8 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG PA PF02225.22 gi|126178029|ref|YP_001045994.1| - 0.0019 18.2 6.2 0.82 9.7 0.8 3.1 1 1 1 2 2 2 2 PA domain NanE PF04131.14 gi|126178029|ref|YP_001045994.1| - 0.05 12.8 0.1 0.096 11.9 0.1 1.5 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|126178029|ref|YP_001045994.1| - 0.073 12.2 0.0 0.47 9.6 0.0 1.9 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase NMO PF03060.15 gi|126178029|ref|YP_001045994.1| - 0.091 12.1 1.1 0.14 11.5 1.1 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase IMPDH PF00478.25 gi|126178029|ref|YP_001045994.1| - 0.17 10.8 1.4 0.69 8.8 0.4 2.1 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|126178029|ref|YP_001045994.1| - 8.2 5.3 7.5 0.59 9.1 1.8 1.9 2 1 1 3 3 3 0 FMN-dependent dehydrogenase NAD_kinase PF01513.21 gi|126178030|ref|YP_001045995.1| - 3.7e-41 141.2 0.0 4.4e-41 141.0 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|126178030|ref|YP_001045995.1| - 2.3e-05 24.0 0.9 4.2e-05 23.2 0.2 1.8 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain DeoRC PF00455.22 gi|126178030|ref|YP_001045995.1| - 0.068 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain Na_Pi_cotrans PF02690.15 gi|126178031|ref|YP_001045996.1| - 3.8e-51 172.8 33.9 8.7e-35 119.8 12.8 2.8 2 1 0 2 2 2 2 Na+/Pi-cotransporter PhoU PF01895.19 gi|126178031|ref|YP_001045996.1| - 0.00014 22.3 0.9 0.00014 22.3 0.9 1.8 2 0 0 2 2 2 1 PhoU domain Gly-zipper_Omp PF13488.6 gi|126178031|ref|YP_001045996.1| - 3.1 7.9 8.1 0.5 10.4 0.6 2.9 3 0 0 3 3 3 0 Glycine zipper DUF3379 PF11859.8 gi|126178033|ref|YP_001045998.1| - 0.14 11.5 0.0 0.19 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3379) DUF3169 PF11368.8 gi|126178034|ref|YP_001045999.1| - 0.031 13.8 0.5 0.034 13.7 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) SLC3A2_N PF16028.5 gi|126178034|ref|YP_001045999.1| - 0.085 12.4 1.6 3.5 7.2 0.0 2.1 2 0 0 2 2 2 0 Solute carrier family 3 member 2 N-terminus Yip1 PF04893.17 gi|126178035|ref|YP_001046000.1| - 0.00096 18.9 9.9 0.0011 18.8 9.9 1.1 1 0 0 1 1 1 1 Yip1 domain COX16 PF14138.6 gi|126178035|ref|YP_001046000.1| - 0.24 11.9 0.1 0.29 11.7 0.1 1.3 1 0 0 1 1 1 0 Cytochrome c oxidase assembly protein COX16 PRA1 PF03208.19 gi|126178035|ref|YP_001046000.1| - 0.9 9.2 5.7 1.6 8.4 5.7 1.4 1 1 0 1 1 1 0 PRA1 family protein ABC2_membrane_2 PF12679.7 gi|126178038|ref|YP_001046003.1| - 4.6e-49 167.2 13.8 5.3e-49 167.1 13.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|126178038|ref|YP_001046003.1| - 8.1e-07 28.7 12.0 8.1e-07 28.7 12.0 2.3 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|126178038|ref|YP_001046003.1| - 1.7e-06 27.8 5.6 1.7e-06 27.8 5.6 2.2 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|126178038|ref|YP_001046003.1| - 0.00023 20.4 17.8 0.00023 20.4 17.8 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|126178038|ref|YP_001046003.1| - 0.028 14.4 16.6 0.0087 16.0 11.7 2.5 2 1 0 2 2 2 0 ABC-2 family transporter protein SurA_N_2 PF13623.6 gi|126178038|ref|YP_001046003.1| - 0.04 13.8 1.7 0.33 10.8 0.0 2.9 2 1 1 3 3 3 0 SurA N-terminal domain ABC2_membrane_2 PF12679.7 gi|126178041|ref|YP_001046006.1| - 0.0013 18.1 0.0 0.0013 18.1 0.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein HTH_24 PF13412.6 gi|126178043|ref|YP_001046008.1| - 2.1e-20 72.0 0.1 1e-09 37.8 0.1 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|126178043|ref|YP_001046008.1| - 1.2e-08 34.8 0.4 0.00029 20.8 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain MarR PF01047.22 gi|126178043|ref|YP_001046008.1| - 1.1e-05 25.3 0.0 0.081 12.9 0.0 2.3 2 0 0 2 2 2 2 MarR family MarR_2 PF12802.7 gi|126178043|ref|YP_001046008.1| - 0.00011 22.0 0.0 0.0009 19.1 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|126178043|ref|YP_001046008.1| - 0.00013 21.9 0.0 0.04 13.9 0.0 2.4 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 gi|126178043|ref|YP_001046008.1| - 0.00038 20.2 0.2 0.14 12.0 0.0 2.4 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|126178043|ref|YP_001046008.1| - 0.0017 18.1 0.1 0.027 14.3 0.1 2.4 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|126178043|ref|YP_001046008.1| - 0.0019 18.0 0.0 2.6 8.0 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|126178043|ref|YP_001046008.1| - 0.014 15.4 0.2 1.5 8.9 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain RP-C PF03428.13 gi|126178043|ref|YP_001046008.1| - 0.014 15.1 0.2 0.041 13.5 0.0 1.7 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_23 PF13384.6 gi|126178043|ref|YP_001046008.1| - 0.042 13.7 0.2 0.21 11.4 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|126178043|ref|YP_001046008.1| - 0.087 13.0 0.0 0.41 10.9 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.6 gi|126178043|ref|YP_001046008.1| - 0.11 12.6 0.0 3.5 7.9 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain RPA_C PF08784.11 gi|126178043|ref|YP_001046008.1| - 0.18 12.5 0.0 11 6.7 0.0 2.1 2 0 0 2 2 2 0 Replication protein A C terminal PPC PF04151.15 gi|126178044|ref|YP_001046009.1| - 0.078 14.1 0.3 0.14 13.3 0.1 1.6 2 0 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain Reprolysin_5 PF13688.6 gi|126178045|ref|YP_001046010.1| - 7.6e-10 39.3 0.2 1.3e-09 38.6 0.2 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_3 PF13582.6 gi|126178045|ref|YP_001046010.1| - 1.6e-07 31.9 0.2 3.2e-07 30.9 0.2 1.5 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.6 gi|126178045|ref|YP_001046010.1| - 9e-07 28.7 0.8 2.1e-06 27.5 0.8 1.6 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Pep_M12B_propep PF01562.19 gi|126178045|ref|YP_001046010.1| - 5.2e-06 26.7 0.0 8.7e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Reprolysin family propeptide Reprolysin_2 PF13574.6 gi|126178045|ref|YP_001046010.1| - 0.0002 21.3 0.2 0.00037 20.4 0.2 1.4 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like DUF5122 PF17164.4 gi|126178047|ref|YP_001046012.1| - 0.15 12.4 5.9 51 4.3 0.0 4.8 4 0 0 4 4 4 0 Domain of unknown function (DUF5122) beta-propeller MarR PF01047.22 gi|126178048|ref|YP_001046013.1| - 8.7e-11 41.6 0.0 1.8e-10 40.5 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|126178048|ref|YP_001046013.1| - 1.4e-07 31.3 0.0 3.3e-07 30.1 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|126178048|ref|YP_001046013.1| - 3.2e-06 27.6 0.4 6.7e-06 26.5 0.1 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|126178048|ref|YP_001046013.1| - 0.00012 21.5 0.1 0.00096 18.7 0.0 2.5 4 0 0 4 4 4 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|126178048|ref|YP_001046013.1| - 0.00031 20.9 0.0 0.0006 20.0 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain RuvB_C PF05491.13 gi|126178048|ref|YP_001046013.1| - 0.0077 16.1 0.1 0.52 10.2 0.0 2.4 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain TrmB PF01978.19 gi|126178048|ref|YP_001046013.1| - 0.013 15.4 0.0 0.068 13.1 0.0 2.2 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB zf_PR_Knuckle PF18445.1 gi|126178048|ref|YP_001046013.1| - 0.013 15.3 0.0 1.4 8.8 0.0 2.3 2 0 0 2 2 2 0 PR zinc knuckle motif UPF0122 PF04297.14 gi|126178048|ref|YP_001046013.1| - 0.018 15.3 0.2 0.43 10.8 0.0 2.6 2 1 1 3 3 3 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_34 PF13601.6 gi|126178048|ref|YP_001046013.1| - 0.1 12.8 0.0 0.15 12.2 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain Lon_C PF05362.13 gi|126178049|ref|YP_001046014.1| - 1.1e-88 296.1 0.4 2.2e-88 295.1 0.4 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA PF00004.29 gi|126178049|ref|YP_001046014.1| - 1.7e-21 77.0 0.0 4.4e-21 75.7 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) LON_substr_bdg PF02190.16 gi|126178049|ref|YP_001046014.1| - 1.5e-11 44.6 0.0 2.8e-11 43.7 0.0 1.5 1 0 0 1 1 1 1 ATP-dependent protease La (LON) substrate-binding domain AAA_5 PF07728.14 gi|126178049|ref|YP_001046014.1| - 2.3e-09 37.4 0.0 8.7e-09 35.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|126178049|ref|YP_001046014.1| - 1.3e-08 34.7 0.0 2.6e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_16 PF13191.6 gi|126178049|ref|YP_001046014.1| - 4e-06 27.3 0.4 2.9e-05 24.5 0.1 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|126178049|ref|YP_001046014.1| - 4.9e-06 26.9 0.0 6.1e-05 23.3 0.0 2.5 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|126178049|ref|YP_001046014.1| - 0.00012 21.8 0.0 0.00034 20.4 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein RuvB_N PF05496.12 gi|126178049|ref|YP_001046014.1| - 0.00024 20.9 0.1 0.0013 18.5 0.0 2.3 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_PrkA PF08298.11 gi|126178049|ref|YP_001046014.1| - 0.00048 19.1 0.0 0.001 18.1 0.0 1.4 1 0 0 1 1 1 1 PrkA AAA domain AAA_2 PF07724.14 gi|126178049|ref|YP_001046014.1| - 0.0011 19.1 0.1 0.0051 16.9 0.0 2.2 3 0 0 3 3 2 1 AAA domain (Cdc48 subfamily) Rad17 PF03215.15 gi|126178049|ref|YP_001046014.1| - 0.0029 17.6 0.0 0.0061 16.5 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_33 PF13671.6 gi|126178049|ref|YP_001046014.1| - 0.0049 17.0 0.0 0.012 15.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.11 gi|126178049|ref|YP_001046014.1| - 0.0073 16.2 0.0 0.04 13.8 0.0 2.3 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 gi|126178049|ref|YP_001046014.1| - 0.0085 15.3 0.1 0.022 14.0 0.0 1.6 2 0 0 2 2 2 1 TIP49 P-loop domain DUF815 PF05673.13 gi|126178049|ref|YP_001046014.1| - 0.014 14.6 0.0 0.039 13.1 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF815) TsaE PF02367.17 gi|126178049|ref|YP_001046014.1| - 0.018 15.0 0.0 0.042 13.9 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Birna_VP4 PF01768.16 gi|126178049|ref|YP_001046014.1| - 0.02 14.7 0.1 0.045 13.6 0.1 1.5 1 0 0 1 1 1 0 Birnavirus VP4 protein AAA_30 PF13604.6 gi|126178049|ref|YP_001046014.1| - 0.021 14.6 0.0 0.059 13.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|126178049|ref|YP_001046014.1| - 0.032 14.8 2.7 0.037 14.6 0.1 2.5 3 0 0 3 3 2 0 AAA domain ATPgrasp_N PF18130.1 gi|126178049|ref|YP_001046014.1| - 0.038 14.6 2.2 0.37 11.4 0.1 3.3 4 0 0 4 4 3 0 ATP-grasp N-terminal domain NTPase_1 PF03266.15 gi|126178049|ref|YP_001046014.1| - 0.041 13.8 3.2 0.07 13.0 0.0 3.0 3 1 2 5 5 4 0 NTPase Zeta_toxin PF06414.12 gi|126178049|ref|YP_001046014.1| - 0.045 13.0 0.1 0.11 11.7 0.1 1.6 1 0 0 1 1 1 0 Zeta toxin Viral_helicase1 PF01443.18 gi|126178049|ref|YP_001046014.1| - 0.073 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 gi|126178049|ref|YP_001046014.1| - 0.076 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|126178049|ref|YP_001046014.1| - 0.12 12.2 0.1 3.3 7.6 0.0 2.6 3 0 0 3 3 2 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|126178049|ref|YP_001046014.1| - 0.13 12.2 0.0 0.63 9.9 0.0 2.1 2 0 0 2 2 2 0 NACHT domain AAA_19 PF13245.6 gi|126178049|ref|YP_001046014.1| - 0.13 12.6 0.4 0.31 11.3 0.0 1.8 2 0 0 2 2 1 0 AAA domain NB-ARC PF00931.22 gi|126178049|ref|YP_001046014.1| - 0.39 9.8 1.5 0.38 9.9 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_11 PF13086.6 gi|126178049|ref|YP_001046014.1| - 1 9.1 5.0 0.27 11.0 0.1 2.1 1 1 1 2 2 2 0 AAA domain DUF3824 PF12868.7 gi|126178050|ref|YP_001046015.1| - 0.22 12.2 0.0 0.38 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknwon function (DUF3824) LolA_like PF17131.4 gi|126178054|ref|YP_001046019.1| - 1.1e-05 25.2 0.0 0.0016 18.3 0.0 2.2 1 1 1 2 2 2 2 Outer membrane lipoprotein-sorting protein LolA_2 PF16584.5 gi|126178054|ref|YP_001046019.1| - 0.036 13.9 0.0 0.061 13.2 0.0 1.3 1 0 0 1 1 1 0 Outer membrane lipoprotein carrier protein LolA CarboxypepD_reg PF13620.6 gi|126178055|ref|YP_001046020.1| - 5.2e-12 45.9 0.5 2.6e-11 43.6 0.1 2.2 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|126178055|ref|YP_001046020.1| - 0.00019 21.4 0.1 0.00078 19.4 0.1 2.1 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarbopepD_reg_2 PF13715.6 gi|126178055|ref|YP_001046020.1| - 0.00023 21.1 0.0 0.00065 19.7 0.0 1.8 1 1 0 1 1 1 1 CarboxypepD_reg-like domain Big_7 PF17957.1 gi|126178055|ref|YP_001046020.1| - 0.002 18.9 0.7 0.015 16.1 0.8 2.3 2 0 0 2 2 2 1 Bacterial Ig domain PEGA PF08308.11 gi|126178055|ref|YP_001046020.1| - 0.0021 17.9 0.8 0.079 12.9 0.0 3.1 3 0 0 3 3 3 1 PEGA domain PGF-CTERM PF18204.1 gi|126178055|ref|YP_001046020.1| - 0.01 15.8 0.6 0.01 15.8 0.6 2.5 3 0 0 3 3 3 0 PGF-CTERM motif Dioxygenase_C PF00775.21 gi|126178055|ref|YP_001046020.1| - 0.033 13.6 0.0 0.057 12.8 0.0 1.4 1 0 0 1 1 1 0 Dioxygenase TraW_N PF12477.8 gi|126178055|ref|YP_001046020.1| - 0.081 12.9 5.8 0.18 11.8 5.8 1.6 1 0 0 1 1 1 0 Sex factor F TraW protein N terminal HTH_3 PF01381.22 gi|126178058|ref|YP_001046023.1| - 3e-09 36.8 0.0 5.8e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|126178058|ref|YP_001046023.1| - 3.4e-06 27.3 0.1 5.2e-06 26.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|126178058|ref|YP_001046023.1| - 4.3e-06 27.1 0.0 6.9e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_IclR PF09339.10 gi|126178058|ref|YP_001046023.1| - 7.2e-05 22.5 0.1 0.0015 18.3 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain TetR_N PF00440.23 gi|126178058|ref|YP_001046023.1| - 0.0031 17.3 0.0 0.0089 15.8 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_19 PF12844.7 gi|126178058|ref|YP_001046023.1| - 0.0042 17.1 0.0 0.0074 16.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|126178058|ref|YP_001046023.1| - 0.016 15.3 0.1 0.068 13.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 gi|126178058|ref|YP_001046023.1| - 0.027 14.0 0.2 0.19 11.3 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding PrpR_N PF06506.11 gi|126178058|ref|YP_001046023.1| - 0.032 13.8 0.3 0.23 11.0 0.3 2.0 2 0 0 2 2 2 0 Propionate catabolism activator HTH_28 PF13518.6 gi|126178058|ref|YP_001046023.1| - 0.034 14.3 0.0 0.081 13.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MerR PF00376.23 gi|126178058|ref|YP_001046023.1| - 0.12 12.2 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 MerR family regulatory protein MarR_2 PF12802.7 gi|126178058|ref|YP_001046023.1| - 0.14 12.1 0.4 1.1 9.1 0.0 2.3 2 1 0 2 2 2 0 MarR family Endonuc-BsobI PF09194.10 gi|126178058|ref|YP_001046023.1| - 0.16 11.2 0.0 0.18 10.9 0.0 1.1 1 0 0 1 1 1 0 Restriction endonuclease BsobI HTH_psq PF05225.16 gi|126178058|ref|YP_001046023.1| - 0.18 11.6 0.2 1 9.2 0.0 2.3 3 0 0 3 3 3 0 helix-turn-helix, Psq domain ABC_tran PF00005.27 gi|126178059|ref|YP_001046024.1| - 4.4e-11 43.4 0.0 6.5e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126178059|ref|YP_001046024.1| - 5.4e-07 29.7 0.0 0.024 14.5 0.0 2.5 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|126178059|ref|YP_001046024.1| - 0.0022 17.7 0.0 0.014 15.1 0.0 2.3 3 0 0 3 3 3 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|126178059|ref|YP_001046024.1| - 0.0054 16.2 0.2 0.31 10.5 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.21 gi|126178059|ref|YP_001046024.1| - 0.0075 15.7 0.0 0.57 9.5 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|126178059|ref|YP_001046024.1| - 0.014 15.7 0.6 0.15 12.3 0.1 2.4 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|126178059|ref|YP_001046024.1| - 0.025 15.0 0.1 0.044 14.2 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|126178059|ref|YP_001046024.1| - 0.063 13.2 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase IIGP PF05049.13 gi|126178059|ref|YP_001046024.1| - 0.1 11.6 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) AAA_7 PF12775.7 gi|126178059|ref|YP_001046024.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_23 PF13476.6 gi|126178059|ref|YP_001046024.1| - 0.13 12.7 0.1 0.22 12.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|126178059|ref|YP_001046024.1| - 0.21 11.2 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain cobW PF02492.19 gi|126178060|ref|YP_001046025.1| - 9.8e-15 54.6 0.0 1.4e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|126178060|ref|YP_001046025.1| - 0.0031 17.9 0.0 0.0049 17.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|126178060|ref|YP_001046025.1| - 0.02 14.9 0.0 0.031 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Hydin_ADK PF17213.3 gi|126178060|ref|YP_001046025.1| - 0.036 14.3 0.1 0.17 12.1 0.0 1.9 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain PduV-EutP PF10662.9 gi|126178060|ref|YP_001046025.1| - 0.062 13.0 0.0 0.23 11.2 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Zeta_toxin PF06414.12 gi|126178060|ref|YP_001046025.1| - 0.065 12.5 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin IF3_N PF05198.16 gi|126178060|ref|YP_001046025.1| - 0.15 12.4 0.1 0.4 11.0 0.0 1.8 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain ATPase_2 PF01637.18 gi|126178060|ref|YP_001046025.1| - 0.17 11.7 0.0 0.26 11.2 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea FeS PF04060.13 gi|126178061|ref|YP_001046026.1| - 4.1e-10 39.1 3.1 9e-10 38.0 3.1 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster HcyBio PF01837.16 gi|126178062|ref|YP_001046027.1| - 3.8e-101 338.4 0.0 4.3e-101 338.2 0.0 1.0 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation Fer4 PF00037.27 gi|126178062|ref|YP_001046027.1| - 8.1e-08 31.8 14.0 4.4e-06 26.3 1.6 3.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126178062|ref|YP_001046027.1| - 1.1e-06 28.6 3.8 0.00034 20.7 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126178062|ref|YP_001046027.1| - 2.4e-06 27.3 14.2 3.8e-05 23.6 2.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126178062|ref|YP_001046027.1| - 1.6e-05 24.9 12.2 2.8e-05 24.1 1.5 2.6 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126178062|ref|YP_001046027.1| - 2.5e-05 24.7 13.2 0.00085 19.9 13.8 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126178062|ref|YP_001046027.1| - 2.5e-05 24.1 14.7 0.0027 17.7 3.3 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|126178062|ref|YP_001046027.1| - 0.00024 21.5 2.4 0.023 15.1 0.5 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126178062|ref|YP_001046027.1| - 0.0003 21.1 11.5 0.0049 17.3 1.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|126178062|ref|YP_001046027.1| - 0.00039 21.3 11.0 0.0069 17.3 1.5 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|126178062|ref|YP_001046027.1| - 0.00089 19.4 11.5 0.01 16.0 12.5 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|126178062|ref|YP_001046027.1| - 0.00096 19.8 7.1 0.0025 18.5 0.5 2.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|126178062|ref|YP_001046027.1| - 0.01 16.3 0.5 0.01 16.3 0.5 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|126178062|ref|YP_001046027.1| - 0.13 13.2 17.7 0.15 13.0 6.5 3.2 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|126178062|ref|YP_001046027.1| - 3.2 8.4 12.0 2.2 8.9 3.8 2.4 1 1 2 3 3 2 0 4Fe-4S dicluster domain PALP PF00291.25 gi|126178063|ref|YP_001046028.1| - 5.2e-30 104.9 0.8 6.6e-30 104.5 0.8 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TPP_enzyme_C PF02775.21 gi|126178064|ref|YP_001046029.1| - 9.9e-13 48.1 0.0 3e-12 46.6 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|126178064|ref|YP_001046029.1| - 1.5e-10 40.9 0.0 8.3e-10 38.5 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PhoR PF11808.8 gi|126178065|ref|YP_001046030.1| - 0.83 10.1 4.2 2 8.9 0.6 2.0 2 0 0 2 2 2 0 Phosphate regulon sensor protein PhoR DUF3871 PF12987.7 gi|126178066|ref|YP_001046031.1| - 0.2 10.4 0.0 0.24 10.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3871) Caroten_synth PF04240.12 gi|126178067|ref|YP_001046032.1| - 6.7e-43 147.0 29.3 6.7e-43 147.0 29.3 1.6 1 1 0 1 1 1 1 Carotenoid biosynthesis protein Amino_oxidase PF01593.24 gi|126178068|ref|YP_001046033.1| - 9.1e-32 110.9 0.0 1.1e-31 110.6 0.0 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|126178068|ref|YP_001046033.1| - 1.1e-16 60.8 0.1 2.3e-16 59.8 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|126178068|ref|YP_001046033.1| - 1.2e-12 48.1 1.2 1.9e-11 44.1 1.2 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|126178068|ref|YP_001046033.1| - 4.3e-06 26.1 0.0 6.3e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|126178068|ref|YP_001046033.1| - 0.00011 21.5 0.4 0.00019 20.8 0.4 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|126178068|ref|YP_001046033.1| - 0.00017 22.1 1.0 0.00062 20.3 0.7 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|126178068|ref|YP_001046033.1| - 0.00024 20.5 0.6 0.00035 19.9 0.6 1.2 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|126178068|ref|YP_001046033.1| - 0.00083 18.7 0.0 0.0013 18.1 0.0 1.3 1 0 0 1 1 1 1 Thi4 family UDPG_MGDP_dh_N PF03721.14 gi|126178068|ref|YP_001046033.1| - 0.0059 16.2 0.1 0.0096 15.5 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HI0933_like PF03486.14 gi|126178068|ref|YP_001046033.1| - 0.006 15.3 0.2 0.025 13.3 0.5 1.9 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_9 PF13454.6 gi|126178068|ref|YP_001046033.1| - 0.014 15.4 0.4 0.034 14.1 0.4 1.6 1 0 0 1 1 1 0 FAD-NAD(P)-binding FAD_oxidored PF12831.7 gi|126178068|ref|YP_001046033.1| - 0.033 13.5 0.0 0.049 13.0 0.0 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|126178068|ref|YP_001046033.1| - 0.052 13.4 0.4 0.08 12.8 0.4 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|126178068|ref|YP_001046033.1| - 0.064 13.5 0.1 0.14 12.5 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain Pyr_redox_3 PF13738.6 gi|126178068|ref|YP_001046033.1| - 0.13 11.5 0.6 0.2 10.8 0.6 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase SQS_PSY PF00494.19 gi|126178069|ref|YP_001046034.1| - 2.4e-52 178.0 0.8 2.7e-52 177.9 0.8 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase UbiA PF01040.18 gi|126178070|ref|YP_001046035.1| - 3.5e-25 88.8 22.7 5.2e-25 88.2 22.7 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Flp_Fap PF04964.14 gi|126178070|ref|YP_001046035.1| - 0.13 12.1 1.0 0.33 10.8 1.0 1.6 1 0 0 1 1 1 0 Flp/Fap pilin component Mem_trans PF03547.18 gi|126178073|ref|YP_001046038.1| - 4.5e-34 117.5 28.7 3.2e-18 65.3 12.3 2.0 1 1 1 2 2 2 2 Membrane transport protein FTP PF07504.13 gi|126178075|ref|YP_001046040.1| - 0.05 13.4 0.6 0.37 10.7 0.1 2.7 3 0 0 3 3 3 0 Fungalysin/Thermolysin Propeptide Motif HTH_20 PF12840.7 gi|126178081|ref|YP_001046046.1| - 1.2e-12 47.7 0.9 2e-12 47.0 0.9 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|126178081|ref|YP_001046046.1| - 4.5e-11 42.4 0.1 7e-11 41.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|126178081|ref|YP_001046046.1| - 3.1e-07 30.1 0.2 6.7e-07 29.0 0.2 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|126178081|ref|YP_001046046.1| - 2.2e-06 27.4 0.3 6.5e-06 25.9 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.6 gi|126178081|ref|YP_001046046.1| - 2.6e-05 24.1 0.0 3.6e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|126178081|ref|YP_001046046.1| - 0.00034 20.1 0.0 0.00083 18.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_10 PF04967.12 gi|126178081|ref|YP_001046046.1| - 0.0051 16.6 0.0 0.012 15.4 0.0 1.6 2 0 0 2 2 2 1 HTH DNA binding domain RP-C PF03428.13 gi|126178081|ref|YP_001046046.1| - 0.0082 15.8 0.1 0.012 15.2 0.1 1.2 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_Crp_2 PF13545.6 gi|126178081|ref|YP_001046046.1| - 0.021 14.8 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PadR PF03551.14 gi|126178081|ref|YP_001046046.1| - 0.039 13.9 0.0 0.056 13.4 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|126178081|ref|YP_001046046.1| - 0.04 14.4 0.1 0.068 13.7 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_40 PF14493.6 gi|126178081|ref|YP_001046046.1| - 0.041 14.3 0.0 0.06 13.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|126178081|ref|YP_001046046.1| - 0.044 13.7 0.0 0.07 13.0 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rio2_N PF09202.11 gi|126178081|ref|YP_001046046.1| - 0.057 13.6 0.0 0.087 13.1 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal Fe_dep_repress PF01325.19 gi|126178081|ref|YP_001046046.1| - 0.067 13.4 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Phage_CI_repr PF07022.13 gi|126178081|ref|YP_001046046.1| - 0.091 12.9 0.0 0.11 12.6 0.0 1.4 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain DUF4423 PF14394.6 gi|126178081|ref|YP_001046046.1| - 0.098 12.4 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DUF3153 PF11353.8 gi|126178082|ref|YP_001046047.1| - 0.48 10.0 1.5 34 3.9 2.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3153) PepSY PF03413.19 gi|126178083|ref|YP_001046048.1| - 4.5e-10 39.9 1.5 0.00037 21.0 0.0 3.4 3 0 0 3 3 3 3 Peptidase propeptide and YPEB domain Phage_holin_3_6 PF07332.11 gi|126178086|ref|YP_001046051.1| - 0.055 13.5 0.5 0.077 13.0 0.5 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III META PF03724.16 gi|126178087|ref|YP_001046052.1| - 1.1e-38 131.5 0.0 7.2e-26 90.3 0.0 4.0 3 1 0 3 3 3 3 META domain Inh PF02974.14 gi|126178087|ref|YP_001046052.1| - 0.013 15.5 0.0 7.7 6.6 0.0 2.9 3 0 0 3 3 3 0 Protease inhibitor Inh PAG PF15347.6 gi|126178088|ref|YP_001046053.1| - 0.39 9.7 0.8 1.6 7.7 1.5 1.6 2 0 0 2 2 2 0 Phosphoprotein associated with glycosphingolipid-enriched DUF3040 PF11239.8 gi|126178089|ref|YP_001046054.1| - 0.068 13.4 0.1 0.66 10.3 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) Reprolysin_3 PF13582.6 gi|126178090|ref|YP_001046055.1| - 8e-15 55.5 0.0 1.6e-14 54.5 0.0 1.6 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|126178090|ref|YP_001046055.1| - 0.00021 21.5 0.1 0.00044 20.4 0.1 1.5 1 1 0 1 1 1 1 Metallo-peptidase family M12 VWA PF00092.28 gi|126178090|ref|YP_001046055.1| - 0.003 17.8 0.0 0.0072 16.6 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain Reprolysin_4 PF13583.6 gi|126178090|ref|YP_001046055.1| - 0.0039 16.8 0.5 0.01 15.5 0.5 1.7 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.8 gi|126178090|ref|YP_001046055.1| - 0.067 11.8 0.0 0.13 10.8 0.0 1.4 2 0 0 2 2 2 0 Putative peptidase family Pep_M12B_propep PF01562.19 gi|126178090|ref|YP_001046055.1| - 0.094 12.9 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Reprolysin family propeptide Zn_peptidase_2 PF04298.12 gi|126178090|ref|YP_001046055.1| - 0.16 11.4 0.4 0.57 9.6 0.0 1.8 2 0 0 2 2 2 0 Putative neutral zinc metallopeptidase Pilin_N PF07790.11 gi|126178091|ref|YP_001046056.1| - 0.095 13.6 0.0 0.17 12.8 0.0 1.3 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal HTH_20 PF12840.7 gi|126178092|ref|YP_001046057.1| - 1.1e-14 54.2 1.9 2.1e-14 53.3 1.9 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|126178092|ref|YP_001046057.1| - 4.9e-13 48.7 0.2 7.1e-13 48.2 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|126178092|ref|YP_001046057.1| - 4.6e-09 36.0 0.3 9.4e-09 35.0 0.3 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|126178092|ref|YP_001046057.1| - 9.8e-09 34.9 0.5 1.9e-08 34.0 0.5 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|126178092|ref|YP_001046057.1| - 4.9e-06 26.0 0.0 9.4e-06 25.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|126178092|ref|YP_001046057.1| - 0.00015 21.6 0.0 0.00023 21.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_10 PF04967.12 gi|126178092|ref|YP_001046057.1| - 0.00024 20.8 0.0 0.00054 19.7 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_11 PF08279.12 gi|126178092|ref|YP_001046057.1| - 0.00037 20.4 0.0 0.00072 19.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 gi|126178092|ref|YP_001046057.1| - 0.0012 18.3 0.0 0.0066 15.9 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_40 PF14493.6 gi|126178092|ref|YP_001046057.1| - 0.0018 18.7 0.0 0.0029 18.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|126178092|ref|YP_001046057.1| - 0.0021 18.2 0.1 0.0033 17.6 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|126178092|ref|YP_001046057.1| - 0.0029 18.1 0.1 0.0058 17.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|126178092|ref|YP_001046057.1| - 0.0036 17.2 0.1 0.0063 16.5 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|126178092|ref|YP_001046057.1| - 0.0051 17.1 0.2 0.0097 16.2 0.2 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_38 PF13936.6 gi|126178092|ref|YP_001046057.1| - 0.0055 16.5 0.0 0.0097 15.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|126178092|ref|YP_001046057.1| - 0.0055 16.6 0.0 0.0084 16.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RP-C PF03428.13 gi|126178092|ref|YP_001046057.1| - 0.0078 15.9 0.2 0.017 14.8 0.1 1.5 2 0 0 2 2 2 1 Replication protein C N-terminal domain MarR PF01047.22 gi|126178092|ref|YP_001046057.1| - 0.0081 16.1 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|126178092|ref|YP_001046057.1| - 0.0081 16.0 0.0 0.029 14.2 0.0 1.9 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain DUF3112 PF11309.8 gi|126178092|ref|YP_001046057.1| - 0.0083 15.6 0.0 0.01 15.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3112) HTH_Tnp_ISL3 PF13542.6 gi|126178092|ref|YP_001046057.1| - 0.017 14.6 0.1 0.042 13.3 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_17 PF12728.7 gi|126178092|ref|YP_001046057.1| - 0.02 15.1 0.0 0.051 13.8 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain DprA_WH PF17782.1 gi|126178092|ref|YP_001046057.1| - 0.022 14.8 1.6 0.039 14.1 1.6 1.4 1 0 0 1 1 1 0 DprA winged helix domain Phage_CI_repr PF07022.13 gi|126178092|ref|YP_001046057.1| - 0.043 13.9 0.0 0.063 13.4 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Rio2_N PF09202.11 gi|126178092|ref|YP_001046057.1| - 0.052 13.8 0.0 0.088 13.0 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal TetR_N PF00440.23 gi|126178092|ref|YP_001046057.1| - 0.057 13.2 0.0 0.24 11.2 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family DUF505 PF04458.12 gi|126178092|ref|YP_001046057.1| - 0.062 11.7 0.0 0.077 11.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_15 PF12324.8 gi|126178092|ref|YP_001046057.1| - 0.067 13.1 0.2 0.12 12.3 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase SpoIIID PF12116.8 gi|126178092|ref|YP_001046057.1| - 0.1 12.7 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Stage III sporulation protein D HTH_23 PF13384.6 gi|126178092|ref|YP_001046057.1| - 0.1 12.4 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Ferric_reduct PF01794.19 gi|126178092|ref|YP_001046057.1| - 0.13 12.4 1.0 0.28 11.3 1.0 1.6 1 1 0 1 1 1 0 Ferric reductase like transmembrane component Sulfolobus_pRN PF05584.11 gi|126178092|ref|YP_001046057.1| - 0.16 12.0 0.0 0.42 10.7 0.0 1.7 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein Dioxygenase_N PF04444.14 gi|126178094|ref|YP_001046059.1| - 0.062 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Catechol dioxygenase N terminus TM_helix PF05552.12 gi|126178094|ref|YP_001046059.1| - 0.16 11.9 0.2 0.33 11.0 0.2 1.5 1 0 0 1 1 1 0 Conserved TM helix RHS PF03527.14 gi|126178096|ref|YP_001046061.1| - 0.67 9.8 2.9 42 4.0 0.0 3.6 4 0 0 4 4 4 0 RHS protein Pep_M12B_propep PF01562.19 gi|126178097|ref|YP_001046062.1| - 1.6e-08 34.9 0.0 2.6e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 Reprolysin family propeptide PepSY PF03413.19 gi|126178097|ref|YP_001046062.1| - 0.0068 17.0 0.1 1 10.0 0.0 2.9 2 0 0 2 2 2 1 Peptidase propeptide and YPEB domain DUF4367 PF14285.6 gi|126178098|ref|YP_001046063.1| - 5.9e-06 26.7 0.0 7.2e-05 23.2 0.0 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4367) Trp_oprn_chp PF09534.10 gi|126178100|ref|YP_001046065.1| - 0.014 15.2 0.1 0.017 14.9 0.1 1.1 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF5590 PF17881.1 gi|126178100|ref|YP_001046065.1| - 0.16 12.1 0.0 0.25 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5590) TM_helix PF05552.12 gi|126178100|ref|YP_001046065.1| - 0.18 11.8 0.3 0.18 11.8 0.3 1.6 2 0 0 2 2 2 0 Conserved TM helix ADP_ribosyl_GH PF03747.14 gi|126178102|ref|YP_001046067.1| - 1.3e-52 179.4 5.8 1.6e-52 179.0 5.8 1.1 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Peptidase_U4 PF03419.13 gi|126178102|ref|YP_001046067.1| - 0.022 14.0 0.1 0.036 13.4 0.1 1.2 1 0 0 1 1 1 0 Sporulation factor SpoIIGA C_GCAxxG_C_C PF09719.10 gi|126178102|ref|YP_001046067.1| - 0.064 13.5 0.2 0.97 9.7 0.0 2.5 2 1 0 2 2 2 0 Putative redox-active protein (C_GCAxxG_C_C) T2SSF PF00482.23 gi|126178102|ref|YP_001046067.1| - 0.069 13.1 0.1 0.22 11.5 0.0 1.8 2 1 0 2 2 2 0 Type II secretion system (T2SS), protein F Gly-zipper_Omp PF13488.6 gi|126178102|ref|YP_001046067.1| - 0.81 9.7 6.0 5.3 7.1 0.1 3.0 3 0 0 3 3 3 0 Glycine zipper Semialdhyde_dh PF01118.24 gi|126178103|ref|YP_001046068.1| - 2.4e-31 108.7 0.0 3.9e-31 108.0 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|126178103|ref|YP_001046068.1| - 1.4e-18 67.6 0.0 2e-18 67.1 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain RmlD_sub_bind PF04321.17 gi|126178103|ref|YP_001046068.1| - 0.00039 19.6 0.0 0.00065 18.9 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain F420_oxidored PF03807.17 gi|126178103|ref|YP_001046068.1| - 0.029 14.9 0.0 0.069 13.7 0.0 1.6 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.20 gi|126178103|ref|YP_001046068.1| - 0.04 14.0 0.0 0.086 13.0 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus CBS PF00571.28 gi|126178104|ref|YP_001046069.1| - 2e-29 101.8 6.9 8.2e-15 55.0 0.8 2.1 2 0 0 2 2 2 2 CBS domain ArgJ PF01960.18 gi|126178105|ref|YP_001046070.1| - 4.9e-135 450.1 3.9 5.6e-135 449.9 3.9 1.0 1 0 0 1 1 1 1 ArgJ family Mak_N_cap PF18085.1 gi|126178105|ref|YP_001046070.1| - 0.21 12.7 1.2 0.66 11.1 0.3 2.2 2 0 0 2 2 2 0 Maltokinase N-terminal cap domain AA_kinase PF00696.28 gi|126178106|ref|YP_001046071.1| - 5.2e-48 163.8 5.7 5.9e-48 163.6 5.7 1.0 1 0 0 1 1 1 1 Amino acid kinase family ssDNA_TraI_N PF18272.1 gi|126178106|ref|YP_001046071.1| - 0.022 14.8 0.1 14 5.7 0.0 2.9 3 0 0 3 3 3 0 single-stranded DNA binding TraI N-terminal subdomain MinC_C PF03775.16 gi|126178106|ref|YP_001046071.1| - 0.11 12.5 0.1 0.11 12.5 0.1 2.3 2 1 0 2 2 2 0 Septum formation inhibitor MinC, C-terminal domain CM_2 PF01817.21 gi|126178107|ref|YP_001046072.1| - 1.9e-15 57.0 6.4 2.1e-15 56.8 6.4 1.0 1 0 0 1 1 1 1 Chorismate mutase type II Osmo_CC PF08946.10 gi|126178107|ref|YP_001046072.1| - 0.58 10.4 3.9 0.19 12.0 1.1 1.7 2 0 0 2 2 2 0 Osmosensory transporter coiled coil Peptidase_M50 PF02163.22 gi|126178108|ref|YP_001046073.1| - 3.8e-07 29.6 8.3 0.016 14.5 0.2 3.1 1 1 1 2 2 2 2 Peptidase family M50 PAS_9 PF13426.7 gi|126178109|ref|YP_001046074.1| - 2.9e-89 294.2 0.0 1.1e-14 54.5 0.0 8.3 8 0 0 8 8 8 8 PAS domain PAS_4 PF08448.10 gi|126178109|ref|YP_001046074.1| - 2.6e-80 265.8 10.8 1.2e-18 67.3 0.0 8.7 9 0 0 9 9 9 8 PAS fold PAS PF00989.25 gi|126178109|ref|YP_001046074.1| - 5.6e-67 222.8 0.0 7.7e-10 38.8 0.0 8.3 8 0 0 8 8 8 8 PAS fold PAS_3 PF08447.12 gi|126178109|ref|YP_001046074.1| - 2.7e-50 168.6 0.0 1.3e-16 60.7 0.0 8.5 8 0 0 8 8 8 7 PAS fold PAS_8 PF13188.7 gi|126178109|ref|YP_001046074.1| - 1.4e-38 130.3 1.4 2.2e-06 27.6 0.0 8.3 8 0 0 8 8 8 6 PAS domain HATPase_c PF02518.26 gi|126178109|ref|YP_001046074.1| - 9.2e-22 77.7 0.0 2.9e-21 76.0 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|126178109|ref|YP_001046074.1| - 5.1e-17 62.1 1.2 0.021 15.0 0.0 8.7 8 3 0 8 8 8 3 PAS fold GAF_2 PF13185.6 gi|126178109|ref|YP_001046074.1| - 8.2e-13 48.8 0.2 2.9e-12 47.1 0.1 2.1 2 0 0 2 2 1 1 GAF domain GAF_3 PF13492.6 gi|126178109|ref|YP_001046074.1| - 3e-11 43.8 0.0 7.7e-11 42.4 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|126178109|ref|YP_001046074.1| - 8.3e-08 32.9 0.0 1.9e-07 31.8 0.0 1.7 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.6 gi|126178109|ref|YP_001046074.1| - 0.00038 20.4 0.0 0.0013 18.7 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain MLTR_LBD PF17765.1 gi|126178109|ref|YP_001046074.1| - 0.0065 16.6 0.0 21 5.2 0.0 4.5 4 1 1 5 5 5 0 MmyB-like transcription regulator ligand binding domain PAS_11 PF14598.6 gi|126178109|ref|YP_001046074.1| - 0.012 15.7 0.0 0.67 10.1 0.0 3.1 3 0 0 3 3 2 0 PAS domain SpoVT_C PF15714.5 gi|126178109|ref|YP_001046074.1| - 0.057 13.5 0.0 0.26 11.4 0.0 2.2 1 0 0 1 1 1 0 Stage V sporulation protein T C-terminal, transcription factor HATPase_c_5 PF14501.6 gi|126178109|ref|YP_001046074.1| - 0.066 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 GHKL domain PAS_12 PF18095.1 gi|126178109|ref|YP_001046074.1| - 0.08 12.6 0.0 1.5 8.4 0.0 2.9 3 0 0 3 3 2 0 UPF0242 C-terminal PAS-like domain DnaB_bind PF10410.9 gi|126178109|ref|YP_001046074.1| - 0.16 12.2 1.7 1.1e+02 3.1 0.0 4.3 4 0 0 4 4 4 0 DnaB-helicase binding domain of primase FMN_red PF03358.15 gi|126178110|ref|YP_001046075.1| - 3.4e-23 82.1 0.0 4.1e-23 81.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|126178110|ref|YP_001046075.1| - 7.4e-15 55.2 0.0 1e-14 54.7 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|126178110|ref|YP_001046075.1| - 0.0096 16.2 0.0 0.043 14.0 0.0 1.9 2 0 0 2 2 2 1 Flavodoxin domain PDH PF02153.17 gi|126178110|ref|YP_001046075.1| - 0.019 14.0 0.0 0.031 13.3 0.0 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase FMN_red PF03358.15 gi|126178111|ref|YP_001046076.1| - 7e-20 71.3 0.4 1.1e-19 70.7 0.3 1.3 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|126178111|ref|YP_001046076.1| - 1.9e-10 40.8 0.0 2.6e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|126178111|ref|YP_001046076.1| - 0.0025 18.1 0.0 0.012 15.8 0.0 1.9 2 0 0 2 2 2 1 Flavodoxin domain BCCT PF02028.17 gi|126178112|ref|YP_001046077.1| - 4.9e-187 622.2 45.8 5.6e-187 622.0 45.8 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter Usp PF00582.26 gi|126178113|ref|YP_001046078.1| - 2.2e-21 76.9 0.8 8.8e-10 39.2 0.0 2.2 2 0 0 2 2 2 2 Universal stress protein family AhpC-TSA PF00578.21 gi|126178114|ref|YP_001046079.1| - 2.7e-34 117.8 0.0 4.2e-34 117.1 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.9 gi|126178114|ref|YP_001046079.1| - 2.2e-19 69.0 0.7 3.6e-19 68.3 0.7 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.10 gi|126178114|ref|YP_001046079.1| - 8.9e-19 67.7 0.0 1.2e-18 67.2 0.0 1.2 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.12 gi|126178114|ref|YP_001046079.1| - 0.035 13.6 0.0 0.049 13.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) SCO1-SenC PF02630.14 gi|126178114|ref|YP_001046079.1| - 0.048 13.6 0.0 0.073 13.0 0.0 1.3 1 0 0 1 1 1 0 SCO1/SenC CMD PF02627.20 gi|126178115|ref|YP_001046080.1| - 5.4e-13 48.8 0.3 6.3e-13 48.6 0.3 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Desulfoferrod_N PF06397.12 gi|126178116|ref|YP_001046081.1| - 2.3e-18 65.5 7.9 2.8e-18 65.2 7.9 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain RecR PF02132.15 gi|126178116|ref|YP_001046081.1| - 0.0086 15.6 0.1 0.013 15.1 0.1 1.3 1 0 0 1 1 1 1 RecR protein DUF3449 PF11931.8 gi|126178116|ref|YP_001046081.1| - 0.11 12.3 0.1 0.12 12.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3449) DUF1451 PF07295.11 gi|126178117|ref|YP_001046082.1| - 3.6e-06 27.1 2.2 4.3e-06 26.8 2.2 1.1 1 0 0 1 1 1 1 Zinc-ribbon containing domain DNA_RNApol_7kD PF03604.13 gi|126178117|ref|YP_001046082.1| - 0.0042 16.7 4.0 0.0084 15.8 4.0 1.5 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.19 gi|126178117|ref|YP_001046082.1| - 0.016 15.2 1.9 0.018 15.0 1.9 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_9 PF14369.6 gi|126178117|ref|YP_001046082.1| - 0.018 15.3 5.0 0.029 14.6 3.5 1.9 2 0 0 2 2 2 0 zinc-ribbon Zn-ribbon_8 PF09723.10 gi|126178117|ref|YP_001046082.1| - 0.018 15.1 2.6 0.03 14.4 2.6 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Prok-RING_1 PF14446.6 gi|126178117|ref|YP_001046082.1| - 0.64 10.0 6.1 0.99 9.4 6.1 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 FMN_red PF03358.15 gi|126178118|ref|YP_001046083.1| - 1.6e-21 76.7 0.0 2e-21 76.3 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|126178118|ref|YP_001046083.1| - 3.3e-12 46.5 0.0 4.4e-12 46.1 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Cation_efflux PF01545.21 gi|126178119|ref|YP_001046084.1| - 2.9e-49 167.5 7.0 3.4e-49 167.3 7.0 1.0 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|126178119|ref|YP_001046084.1| - 1.7e-23 82.5 0.2 3.2e-23 81.6 0.2 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Rubrerythrin PF02915.17 gi|126178120|ref|YP_001046085.1| - 3.3e-20 72.9 12.7 3.6e-19 69.5 12.7 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|126178120|ref|YP_001046085.1| - 0.00041 20.3 3.8 0.00063 19.7 3.8 1.2 1 0 0 1 1 1 1 Ferritin-like domain RecR PF02132.15 gi|126178120|ref|YP_001046085.1| - 0.0005 19.6 0.1 0.0012 18.4 0.1 1.6 1 0 0 1 1 1 1 RecR protein zf-ribbon_3 PF13248.6 gi|126178120|ref|YP_001046085.1| - 0.23 10.9 4.3 0.56 9.7 4.3 1.6 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|126178120|ref|YP_001046085.1| - 0.66 9.5 5.6 6.7 6.3 0.2 2.8 3 0 0 3 3 3 0 TFIIB zinc-binding DUF3797 PF12677.7 gi|126178120|ref|YP_001046085.1| - 1.3 9.0 3.8 1 9.3 1.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DNA_ligase_ZBD PF03119.16 gi|126178120|ref|YP_001046085.1| - 1.7 8.7 6.8 9.8 6.3 0.1 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-RRN7 PF11781.8 gi|126178120|ref|YP_001046085.1| - 2 8.2 3.8 2.8 7.7 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-Mss51 PF13824.6 gi|126178120|ref|YP_001046085.1| - 3 8.0 4.3 6.4 7.0 3.0 2.1 1 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Rad50_zn_hook PF04423.14 gi|126178120|ref|YP_001046085.1| - 9.5 6.1 6.7 9.8 6.1 0.2 2.9 2 1 0 2 2 2 0 Rad50 zinc hook motif Pyr_redox_2 PF07992.14 gi|126178121|ref|YP_001046086.1| - 2.8e-41 141.7 3.8 4.2e-41 141.1 3.8 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|126178121|ref|YP_001046086.1| - 1.5e-24 86.8 0.3 1.3e-18 67.3 0.0 2.5 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Glutaredoxin PF00462.24 gi|126178121|ref|YP_001046086.1| - 2.3e-16 59.7 0.9 1.2e-15 57.4 0.1 2.6 3 0 0 3 3 3 1 Glutaredoxin Pyr_redox PF00070.27 gi|126178121|ref|YP_001046086.1| - 2.8e-11 43.8 3.1 2e-09 37.9 0.1 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|126178121|ref|YP_001046086.1| - 3.5e-11 42.8 11.4 7.4e-06 25.3 0.2 4.4 2 1 2 4 4 4 4 FAD binding domain Thi4 PF01946.17 gi|126178121|ref|YP_001046086.1| - 2.9e-07 30.0 0.9 6.3e-06 25.6 0.1 2.7 3 0 0 3 3 3 1 Thi4 family HI0933_like PF03486.14 gi|126178121|ref|YP_001046086.1| - 3.3e-07 29.4 3.9 0.0075 15.0 0.7 3.8 4 0 0 4 4 4 3 HI0933-like protein DAO PF01266.24 gi|126178121|ref|YP_001046086.1| - 5e-06 26.3 11.8 0.0063 16.1 1.3 4.0 2 2 3 5 5 5 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|126178121|ref|YP_001046086.1| - 8.2e-06 26.0 0.7 0.0011 19.1 0.2 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 gi|126178121|ref|YP_001046086.1| - 2.3e-05 23.7 0.8 9.8 5.2 0.0 4.7 4 1 1 5 5 5 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 gi|126178121|ref|YP_001046086.1| - 2.4e-05 24.7 1.6 0.0059 17.0 0.1 3.0 3 1 0 3 3 3 1 Putative NAD(P)-binding GIDA PF01134.22 gi|126178121|ref|YP_001046086.1| - 2.5e-05 23.5 8.7 0.0069 15.5 1.6 3.7 4 0 0 4 4 4 2 Glucose inhibited division protein A GST_N_3 PF13417.6 gi|126178121|ref|YP_001046086.1| - 3.9e-05 24.0 0.0 6.7e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain FAD_oxidored PF12831.7 gi|126178121|ref|YP_001046086.1| - 0.0001 21.8 8.6 0.00031 20.2 0.1 3.5 4 0 0 4 4 4 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|126178121|ref|YP_001046086.1| - 0.00041 19.7 6.0 0.11 11.7 0.1 3.2 2 1 1 3 3 3 2 FAD binding domain Lycopene_cycl PF05834.12 gi|126178121|ref|YP_001046086.1| - 0.00058 19.0 0.1 0.13 11.3 0.0 2.5 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|126178121|ref|YP_001046086.1| - 0.0069 16.4 6.1 0.59 10.1 0.0 3.7 3 1 1 4 4 4 1 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|126178121|ref|YP_001046086.1| - 0.016 14.1 1.9 0.25 10.1 0.6 2.2 2 0 0 2 2 2 0 Tryptophan halogenase Catalase_C PF18011.1 gi|126178121|ref|YP_001046086.1| - 0.033 13.8 0.1 2 8.1 0.1 2.7 2 0 0 2 2 2 0 C-terminal domain found in long catalases Thioredoxin_3 PF13192.6 gi|126178121|ref|YP_001046086.1| - 0.035 14.1 0.1 0.32 11.1 0.0 2.5 2 0 0 2 2 2 0 Thioredoxin domain Thioredoxin_2 PF13098.6 gi|126178121|ref|YP_001046086.1| - 0.055 13.9 0.0 0.12 12.9 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like domain GST_N_2 PF13409.6 gi|126178121|ref|YP_001046086.1| - 0.073 13.4 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|126178121|ref|YP_001046086.1| - 0.094 13.1 0.0 0.3 11.5 0.0 1.8 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Staph_opine_DH PF10100.9 gi|126178121|ref|YP_001046086.1| - 0.14 10.7 0.1 3.7 6.1 0.0 2.2 2 0 0 2 2 2 0 Staphylopine dehydrogenase AlaDh_PNT_C PF01262.21 gi|126178121|ref|YP_001046086.1| - 0.2 11.0 4.4 5.6 6.2 0.7 2.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NTP_transf_2 PF01909.23 gi|126178122|ref|YP_001046087.1| - 4.5e-10 39.7 0.0 4.7e-10 39.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|126178122|ref|YP_001046087.1| - 3.5e-08 33.4 0.0 3.7e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HEPN PF05168.14 gi|126178123|ref|YP_001046088.1| - 1.7e-32 112.0 0.7 2e-32 111.8 0.7 1.0 1 0 0 1 1 1 1 HEPN domain Polbeta PF18765.1 gi|126178124|ref|YP_001046089.1| - 9e-13 48.1 0.0 1.1e-12 47.8 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|126178124|ref|YP_001046089.1| - 0.012 15.9 0.0 0.014 15.7 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyltransferase domain CDP-OH_P_transf PF01066.21 gi|126178125|ref|YP_001046090.1| - 3.3e-13 50.2 4.5 3.3e-13 50.2 4.5 2.1 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Syndecan PF01034.20 gi|126178125|ref|YP_001046090.1| - 0.47 10.4 1.3 1.4 8.9 1.3 1.8 1 0 0 1 1 1 0 Syndecan domain STT3 PF02516.14 gi|126178126|ref|YP_001046091.1| - 1.1e-20 74.0 35.1 8.9e-20 71.1 35.1 2.4 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|126178126|ref|YP_001046091.1| - 1.7e-08 34.6 2.5 4.6e-08 33.2 2.5 1.7 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain ParE_toxin PF05016.15 gi|126178127|ref|YP_001046092.1| - 0.00015 22.3 0.4 0.0002 21.9 0.4 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|126178127|ref|YP_001046092.1| - 0.0036 17.2 0.2 0.0089 16.0 0.2 1.7 1 1 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system DUF3989 PF13150.6 gi|126178127|ref|YP_001046092.1| - 0.012 15.4 0.2 0.027 14.2 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3989) VAPB_antitox PF02697.14 gi|126178128|ref|YP_001046093.1| - 0.0022 18.8 0.1 0.0026 18.5 0.1 1.1 1 0 0 1 1 1 1 Putative antitoxin DUF1016_N PF17761.1 gi|126178129|ref|YP_001046094.1| - 2.8e-12 47.0 0.0 2.9e-12 46.9 0.0 1.0 1 0 0 1 1 1 1 DUF1016 N-terminal domain VAPB_antitox PF02697.14 gi|126178130|ref|YP_001046095.1| - 7.9e-08 33.0 1.3 9.8e-08 32.7 1.3 1.1 1 0 0 1 1 1 1 Putative antitoxin MatP_C PF17414.2 gi|126178130|ref|YP_001046095.1| - 0.001 19.2 0.2 0.0012 19.0 0.2 1.2 1 0 0 1 1 1 1 MatP C-terminal ribbon-helix-helix domain ABC_tran_2 PF16949.5 gi|126178131|ref|YP_001046096.1| - 0.038 12.8 0.0 0.047 12.5 0.0 1.1 1 0 0 1 1 1 0 Putative ATP-binding cassette HATPase_c_4 PF13749.6 gi|126178133|ref|YP_001046098.1| - 4.9e-17 61.8 0.0 9.4e-17 60.9 0.0 1.5 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal AlbA_2 PF04326.14 gi|126178133|ref|YP_001046098.1| - 2.1e-14 53.9 0.0 4.4e-14 52.8 0.0 1.6 1 0 0 1 1 1 1 Putative DNA-binding domain Glycos_transf_1 PF00534.20 gi|126178134|ref|YP_001046099.1| - 1.3e-33 116.0 0.0 2.7e-33 114.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126178134|ref|YP_001046099.1| - 3.1e-30 105.3 0.2 1.6e-29 103.1 0.1 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126178134|ref|YP_001046099.1| - 3.4e-30 105.3 1.5 6.1e-28 97.9 1.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|126178134|ref|YP_001046099.1| - 8.6e-21 75.0 12.0 9.9e-21 74.8 6.5 2.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|126178134|ref|YP_001046099.1| - 0.0062 16.9 0.0 0.013 15.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|126178135|ref|YP_001046100.1| - 2.1e-29 102.3 0.0 3.6e-29 101.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126178135|ref|YP_001046100.1| - 2.8e-21 76.3 0.0 5.6e-21 75.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126178135|ref|YP_001046100.1| - 3.1e-10 40.3 0.2 5.8e-10 39.4 0.2 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Epimerase_2 PF02350.19 gi|126178135|ref|YP_001046100.1| - 0.00011 21.2 0.0 0.00018 20.5 0.0 1.2 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_1_2 PF13524.6 gi|126178135|ref|YP_001046100.1| - 0.003 17.9 0.1 0.0098 16.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|126178135|ref|YP_001046100.1| - 0.0032 17.9 0.7 0.0083 16.6 0.7 1.9 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain dTDP_sugar_isom PF00908.17 gi|126178136|ref|YP_001046101.1| - 7.3e-15 55.1 0.0 8.1e-15 54.9 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.11 gi|126178136|ref|YP_001046101.1| - 3.5e-05 23.5 0.0 4.5e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.11 gi|126178136|ref|YP_001046101.1| - 0.0021 17.7 0.0 1.7 8.4 0.0 2.2 2 0 0 2 2 2 2 Cupin domain GDP_Man_Dehyd PF16363.5 gi|126178137|ref|YP_001046102.1| - 1e-82 278.2 0.0 1.2e-82 278.0 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|126178137|ref|YP_001046102.1| - 6.3e-66 222.3 0.0 7.5e-66 222.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|126178137|ref|YP_001046102.1| - 6.5e-21 74.7 0.0 3e-20 72.5 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|126178137|ref|YP_001046102.1| - 3.2e-19 69.1 0.0 1.1e-18 67.4 0.0 1.8 1 1 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|126178137|ref|YP_001046102.1| - 3.8e-19 68.7 0.0 5.5e-19 68.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|126178137|ref|YP_001046102.1| - 6.3e-15 55.0 0.0 1.1e-13 51.0 0.0 2.3 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|126178137|ref|YP_001046102.1| - 9.4e-10 38.7 0.0 1.7e-09 37.9 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|126178137|ref|YP_001046102.1| - 0.012 15.5 0.0 0.022 14.7 0.0 1.4 1 1 0 1 1 1 0 KR domain adh_short PF00106.25 gi|126178137|ref|YP_001046102.1| - 0.033 13.6 0.0 0.084 12.3 0.0 1.6 1 1 0 1 1 1 0 short chain dehydrogenase RmlD_sub_bind PF04321.17 gi|126178138|ref|YP_001046103.1| - 8e-88 294.3 0.0 9.9e-88 293.9 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|126178138|ref|YP_001046103.1| - 1.3e-15 57.5 0.0 2.3e-15 56.7 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|126178138|ref|YP_001046103.1| - 4.3e-09 36.2 0.0 5.7e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|126178138|ref|YP_001046103.1| - 2.2e-08 33.6 0.0 2.5e-07 30.1 0.0 2.4 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|126178138|ref|YP_001046103.1| - 0.0083 15.3 0.0 0.025 13.7 0.0 1.7 1 1 0 1 1 1 1 Male sterility protein NTP_transferase PF00483.23 gi|126178139|ref|YP_001046104.1| - 1e-52 179.2 0.0 1.2e-52 179.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|126178139|ref|YP_001046104.1| - 4.7e-14 53.0 0.0 5.5e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|126178139|ref|YP_001046104.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase Glycos_transf_2 PF00535.26 gi|126178140|ref|YP_001046105.1| - 1.3e-32 113.0 0.0 1.9e-32 112.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|126178140|ref|YP_001046105.1| - 1e-22 81.1 0.0 2e-22 80.2 0.0 1.4 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|126178140|ref|YP_001046105.1| - 6.7e-13 49.0 0.1 1.2e-12 48.1 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|126178140|ref|YP_001046105.1| - 9.4e-05 22.0 0.0 0.00064 19.3 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|126178140|ref|YP_001046105.1| - 0.0025 17.3 0.0 0.0071 15.8 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|126178140|ref|YP_001046105.1| - 0.026 15.0 0.0 0.048 14.2 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 ABC2_membrane PF01061.24 gi|126178141|ref|YP_001046106.1| - 4.3e-22 78.6 31.2 4.3e-22 78.6 31.2 1.8 1 1 1 2 2 2 1 ABC-2 type transporter Gram_pos_anchor PF00746.21 gi|126178141|ref|YP_001046106.1| - 1.5 8.9 4.7 2.6 8.1 0.8 2.9 2 0 0 2 2 2 0 LPXTG cell wall anchor motif ABC_tran PF00005.27 gi|126178142|ref|YP_001046107.1| - 2e-22 80.2 0.0 1.8e-21 77.1 0.0 2.2 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126178142|ref|YP_001046107.1| - 2.2e-07 31.0 1.4 8.4e-06 25.8 0.4 2.3 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|126178142|ref|YP_001046107.1| - 8.6e-07 28.6 0.0 1.7e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|126178142|ref|YP_001046107.1| - 5.9e-06 25.9 0.1 0.02 14.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|126178142|ref|YP_001046107.1| - 6e-06 26.9 0.1 1.1e-05 26.1 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|126178142|ref|YP_001046107.1| - 0.0016 18.9 0.2 0.014 15.8 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|126178142|ref|YP_001046107.1| - 0.0017 18.3 0.6 1.5 8.7 0.1 2.2 2 0 0 2 2 2 2 NTPase RsgA_GTPase PF03193.16 gi|126178142|ref|YP_001046107.1| - 0.0078 16.1 0.0 0.016 15.1 0.0 1.5 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|126178142|ref|YP_001046107.1| - 0.016 15.6 0.0 0.027 14.8 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|126178142|ref|YP_001046107.1| - 0.018 14.7 0.1 0.02 14.6 0.1 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|126178142|ref|YP_001046107.1| - 0.024 14.4 0.0 0.078 12.7 0.0 2.0 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|126178142|ref|YP_001046107.1| - 0.049 13.5 0.0 0.49 10.3 0.0 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_18 PF13238.6 gi|126178142|ref|YP_001046107.1| - 0.078 13.5 0.4 0.47 11.0 0.4 2.3 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|126178142|ref|YP_001046107.1| - 0.082 13.1 0.1 0.17 12.0 0.0 1.7 2 1 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|126178142|ref|YP_001046107.1| - 0.088 11.9 0.2 0.81 8.7 0.0 2.2 2 1 0 2 2 2 0 Type II/IV secretion system protein AAA_24 PF13479.6 gi|126178142|ref|YP_001046107.1| - 0.14 11.9 0.2 0.33 10.7 0.1 1.8 1 1 1 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|126178142|ref|YP_001046107.1| - 0.15 11.7 0.0 0.36 10.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|126178142|ref|YP_001046107.1| - 0.19 11.8 0.5 0.61 10.2 0.5 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase Glycos_transf_2 PF00535.26 gi|126178143|ref|YP_001046108.1| - 2.6e-55 186.8 0.0 2.4e-30 105.5 0.0 2.3 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|126178143|ref|YP_001046108.1| - 1.6e-23 83.6 0.0 5.1e-11 42.6 0.0 3.3 3 0 0 3 3 3 3 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|126178143|ref|YP_001046108.1| - 3.3e-22 79.5 0.0 1.2e-12 48.3 0.0 2.6 2 1 0 2 2 2 2 Glycosyltransferase like family 2 Methyltransf_23 PF13489.6 gi|126178143|ref|YP_001046108.1| - 8.9e-20 71.2 0.0 5.8e-19 68.5 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126178143|ref|YP_001046108.1| - 4.8e-15 55.7 0.0 1.5e-14 54.1 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126178143|ref|YP_001046108.1| - 1.4e-14 54.5 0.0 4.5e-14 52.9 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126178143|ref|YP_001046108.1| - 6.3e-13 49.3 0.0 3.1e-12 47.1 0.0 2.3 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126178143|ref|YP_001046108.1| - 6e-11 42.9 0.0 3.7e-10 40.4 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain MetW PF07021.12 gi|126178143|ref|YP_001046108.1| - 1.3e-07 31.4 0.0 2.8e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Glyco_tranf_2_5 PF13712.6 gi|126178143|ref|YP_001046108.1| - 2.4e-05 24.1 0.0 0.01 15.5 0.0 2.8 2 1 0 2 2 2 1 Glycosyltransferase like family Glyco_trans_2_3 PF13632.6 gi|126178143|ref|YP_001046108.1| - 5.7e-05 23.1 0.3 0.07 13.0 0.1 2.6 2 1 0 2 2 2 2 Glycosyl transferase family group 2 Methyltransf_9 PF08003.11 gi|126178143|ref|YP_001046108.1| - 0.00079 18.4 0.0 0.0017 17.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Glyco_transf_7C PF02709.14 gi|126178143|ref|YP_001046108.1| - 0.0012 18.4 0.0 0.057 13.1 0.0 2.6 2 0 0 2 2 2 1 N-terminal domain of galactosyltransferase Laminin_I PF06008.14 gi|126178143|ref|YP_001046108.1| - 0.0015 18.3 6.1 0.0025 17.6 6.1 1.2 1 0 0 1 1 1 1 Laminin Domain I NodS PF05401.11 gi|126178143|ref|YP_001046108.1| - 0.0029 17.3 0.0 0.0055 16.3 0.0 1.4 1 0 0 1 1 1 1 Nodulation protein S (NodS) ATG16 PF08614.11 gi|126178143|ref|YP_001046108.1| - 0.0042 17.3 8.5 0.0096 16.2 8.0 1.7 1 1 0 1 1 1 1 Autophagy protein 16 (ATG16) APG6_N PF17675.1 gi|126178143|ref|YP_001046108.1| - 0.0047 17.5 5.9 0.0099 16.4 5.9 1.5 1 0 0 1 1 1 1 Apg6 coiled-coil region ERM PF00769.19 gi|126178143|ref|YP_001046108.1| - 0.0064 16.3 3.4 0.011 15.6 3.4 1.3 1 0 0 1 1 1 1 Ezrin/radixin/moesin family Filament PF00038.21 gi|126178143|ref|YP_001046108.1| - 0.0065 16.1 5.2 0.01 15.4 5.2 1.2 1 0 0 1 1 1 1 Intermediate filament protein Atg14 PF10186.9 gi|126178143|ref|YP_001046108.1| - 0.0088 15.2 1.3 0.015 14.4 1.3 1.3 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 FAM76 PF16046.5 gi|126178143|ref|YP_001046108.1| - 0.019 14.3 2.9 0.033 13.6 2.9 1.2 1 0 0 1 1 1 0 FAM76 protein Leu_zip PF15294.6 gi|126178143|ref|YP_001046108.1| - 0.032 13.8 0.4 0.052 13.1 0.4 1.2 1 0 0 1 1 1 0 Leucine zipper Methyltransf_3 PF01596.17 gi|126178143|ref|YP_001046108.1| - 0.045 12.9 0.0 0.13 11.4 0.0 1.7 1 0 0 1 1 1 0 O-methyltransferase AAA_13 PF13166.6 gi|126178143|ref|YP_001046108.1| - 0.049 12.3 0.1 0.074 11.7 0.1 1.1 1 0 0 1 1 1 0 AAA domain DUF3450 PF11932.8 gi|126178143|ref|YP_001046108.1| - 0.051 12.9 8.8 0.095 12.0 8.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) KASH_CCD PF14662.6 gi|126178143|ref|YP_001046108.1| - 0.052 13.4 4.6 0.12 12.2 4.6 1.5 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH HMMR_N PF15905.5 gi|126178143|ref|YP_001046108.1| - 0.064 12.7 5.4 0.098 12.1 5.4 1.2 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal DUF1664 PF07889.12 gi|126178143|ref|YP_001046108.1| - 0.17 11.9 2.3 0.47 10.5 2.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) IFT57 PF10498.9 gi|126178143|ref|YP_001046108.1| - 0.18 10.7 4.9 0.29 10.1 4.9 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 bZIP_1 PF00170.21 gi|126178143|ref|YP_001046108.1| - 0.19 11.9 1.5 29 4.9 0.0 2.7 1 1 1 2 2 2 0 bZIP transcription factor TMF_DNA_bd PF12329.8 gi|126178143|ref|YP_001046108.1| - 0.21 11.6 8.7 0.5 10.4 2.7 2.4 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Spc7 PF08317.11 gi|126178143|ref|YP_001046108.1| - 0.25 10.2 5.0 0.44 9.4 5.0 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein Phage_GP20 PF06810.11 gi|126178143|ref|YP_001046108.1| - 0.38 10.6 1.9 0.77 9.6 1.9 1.4 1 0 0 1 1 1 0 Phage minor structural protein GP20 JIP_LZII PF16471.5 gi|126178143|ref|YP_001046108.1| - 0.54 10.5 2.9 2.1 8.6 1.9 2.2 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II UPF0242 PF06785.11 gi|126178143|ref|YP_001046108.1| - 0.61 10.2 4.3 1.3 9.1 4.3 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus TACC_C PF05010.14 gi|126178143|ref|YP_001046108.1| - 1 9.1 5.4 1.6 8.4 2.4 2.0 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal BRE1 PF08647.11 gi|126178143|ref|YP_001046108.1| - 1.2 9.2 4.3 2.4 8.3 4.3 1.5 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase ADIP PF11559.8 gi|126178143|ref|YP_001046108.1| - 2.2 8.3 11.2 0.085 12.9 5.0 1.7 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Fib_alpha PF08702.10 gi|126178143|ref|YP_001046108.1| - 9.2 6.4 6.2 18 5.5 6.2 1.4 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Hydrolase_like PF13242.6 gi|126178144|ref|YP_001046109.1| - 0.0047 17.0 0.0 0.009 16.1 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Ig_5 PF16681.5 gi|126178144|ref|YP_001046109.1| - 0.055 13.9 0.1 0.69 10.4 0.0 2.5 3 0 0 3 3 3 0 Ig-like domain on T-cell surface glycoprotein CD3 epsilon chain Methyltransf_9 PF08003.11 gi|126178145|ref|YP_001046110.1| - 3.1e-08 32.9 0.0 4.4e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_23 PF13489.6 gi|126178145|ref|YP_001046110.1| - 6.2e-06 26.1 0.0 1.1e-05 25.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126178145|ref|YP_001046110.1| - 0.0001 22.2 0.0 0.00014 21.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126178145|ref|YP_001046110.1| - 0.0034 18.0 0.0 0.0061 17.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126178145|ref|YP_001046110.1| - 0.0094 16.6 0.0 0.016 15.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126178145|ref|YP_001046110.1| - 0.1 13.3 0.0 0.2 12.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Oxidored-like PF09791.9 gi|126178146|ref|YP_001046111.1| - 0.03 14.0 0.1 0.037 13.7 0.1 1.1 1 0 0 1 1 1 0 Oxidoreductase-like protein, N-terminal Atthog PF18800.1 gi|126178149|ref|YP_001046114.1| - 0.016 15.1 0.7 0.016 15.1 0.7 2.5 3 0 0 3 3 3 0 Attenuator of Hedgehog Fig1 PF12351.8 gi|126178149|ref|YP_001046114.1| - 3.8 7.4 10.1 0.66 9.9 5.5 2.1 2 0 0 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 LPG_synthase_TM PF03706.13 gi|126178150|ref|YP_001046115.1| - 1.6e-45 156.0 31.2 1.8e-45 155.7 31.2 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Phage_holin_3_6 PF07332.11 gi|126178150|ref|YP_001046115.1| - 0.0025 17.8 1.0 0.0025 17.8 1.0 3.9 3 1 0 3 3 3 1 Putative Actinobacterial Holin-X, holin superfamily III Ilm1 PF10311.9 gi|126178150|ref|YP_001046115.1| - 1.1 8.8 7.0 0.2 11.3 2.2 2.1 2 0 0 2 2 2 0 Increased loss of mitochondrial DNA protein 1 Methyltransf_23 PF13489.6 gi|126178152|ref|YP_001046117.1| - 4.6e-17 62.4 0.0 5.6e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126178152|ref|YP_001046117.1| - 1.6e-14 54.0 0.0 1.9e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126178152|ref|YP_001046117.1| - 5.9e-13 49.3 0.0 9.5e-13 48.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126178152|ref|YP_001046117.1| - 1.8e-12 47.8 0.0 2.9e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126178152|ref|YP_001046117.1| - 2.2e-11 44.4 0.0 3.5e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|126178152|ref|YP_001046117.1| - 7.7e-09 35.4 0.0 1.1e-08 35.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|126178152|ref|YP_001046117.1| - 6e-08 32.3 0.0 7.5e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|126178152|ref|YP_001046117.1| - 3.3e-06 26.8 0.0 5.5e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.11 gi|126178152|ref|YP_001046117.1| - 0.00015 20.8 0.1 0.00023 20.2 0.1 1.2 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) AdoMet_MTase PF07757.13 gi|126178152|ref|YP_001046117.1| - 0.0056 17.0 0.0 0.01 16.1 0.0 1.4 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase Pox_MCEL PF03291.16 gi|126178152|ref|YP_001046117.1| - 0.0073 15.5 0.0 0.011 14.9 0.0 1.3 1 1 0 1 1 1 1 mRNA capping enzyme Methyltransf_2 PF00891.18 gi|126178152|ref|YP_001046117.1| - 0.018 14.3 0.0 0.047 13.0 0.0 1.6 1 1 0 1 1 1 0 O-methyltransferase domain NodS PF05401.11 gi|126178152|ref|YP_001046117.1| - 0.023 14.3 0.0 0.032 13.9 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_4 PF02390.17 gi|126178152|ref|YP_001046117.1| - 0.028 13.9 0.0 0.049 13.1 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_32 PF13679.6 gi|126178152|ref|YP_001046117.1| - 0.035 14.1 0.0 0.047 13.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.14 gi|126178152|ref|YP_001046117.1| - 0.039 13.4 0.0 0.053 12.9 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB CheR PF01739.18 gi|126178152|ref|YP_001046117.1| - 0.068 12.6 0.0 0.59 9.6 0.1 2.1 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain FtsJ PF01728.19 gi|126178152|ref|YP_001046117.1| - 0.077 13.1 0.0 0.14 12.2 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase TPMT PF05724.11 gi|126178152|ref|YP_001046117.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) PrmA PF06325.13 gi|126178152|ref|YP_001046117.1| - 0.13 11.7 0.0 0.17 11.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) PP-binding_2 PF14573.6 gi|126178152|ref|YP_001046117.1| - 0.13 12.5 0.1 0.19 12.0 0.1 1.2 1 0 0 1 1 1 0 Acyl-carrier Glycos_transf_1 PF00534.20 gi|126178153|ref|YP_001046118.1| - 5.7e-39 133.4 0.0 9.3e-39 132.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126178153|ref|YP_001046118.1| - 4.5e-30 104.8 0.0 1.1e-28 100.3 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126178153|ref|YP_001046118.1| - 2.8e-28 99.0 0.0 4.5e-28 98.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|126178153|ref|YP_001046118.1| - 2.6e-19 70.2 0.0 3.8e-19 69.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|126178153|ref|YP_001046118.1| - 4.7e-14 52.6 0.0 7.9e-14 51.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|126178153|ref|YP_001046118.1| - 1.9e-10 41.0 0.0 3.9e-10 40.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|126178153|ref|YP_001046118.1| - 9e-07 28.8 0.1 3e-06 27.1 0.0 1.8 1 1 1 2 2 2 1 Starch synthase catalytic domain Glyco_transf_20 PF00982.21 gi|126178153|ref|YP_001046118.1| - 0.035 12.8 0.0 0.072 11.7 0.0 1.5 2 0 0 2 2 2 0 Glycosyltransferase family 20 Glycos_transf_2 PF00535.26 gi|126178154|ref|YP_001046119.1| - 2.1e-35 122.0 0.0 2.8e-35 121.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|126178154|ref|YP_001046119.1| - 5.1e-12 46.2 0.0 1.1e-11 45.1 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|126178154|ref|YP_001046119.1| - 2.2e-07 30.6 0.0 2.9e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.7 gi|126178154|ref|YP_001046119.1| - 0.0018 18.7 0.0 0.0026 18.1 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_tranf_2_4 PF13704.6 gi|126178154|ref|YP_001046119.1| - 0.011 16.2 0.0 0.021 15.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|126178154|ref|YP_001046119.1| - 0.013 15.0 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 GDP_Man_Dehyd PF16363.5 gi|126178155|ref|YP_001046120.1| - 6.1e-68 229.7 0.0 2.1e-67 227.9 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|126178155|ref|YP_001046120.1| - 1.4e-62 211.4 0.0 1.6e-62 211.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|126178155|ref|YP_001046120.1| - 5.2e-23 81.5 0.0 7.3e-23 81.0 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|126178155|ref|YP_001046120.1| - 1.2e-22 80.5 0.0 4.7e-22 78.5 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|126178155|ref|YP_001046120.1| - 1.2e-17 63.9 0.0 1.6e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|126178155|ref|YP_001046120.1| - 2.1e-12 47.3 0.0 5.4e-12 46.0 0.0 1.7 1 1 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|126178155|ref|YP_001046120.1| - 1.3e-09 37.7 0.0 0.0022 17.2 0.0 2.8 2 1 0 2 2 2 2 Male sterility protein NmrA PF05368.13 gi|126178155|ref|YP_001046120.1| - 8e-07 28.9 0.0 1e-06 28.5 0.0 1.3 1 1 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|126178155|ref|YP_001046120.1| - 0.0053 16.7 0.0 0.024 14.5 0.0 1.9 1 1 0 1 1 1 1 KR domain adh_short PF00106.25 gi|126178155|ref|YP_001046120.1| - 0.013 15.0 0.0 0.065 12.7 0.0 2.2 1 1 0 1 1 1 0 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|126178155|ref|YP_001046120.1| - 0.13 12.5 0.0 0.25 11.6 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NTP_transferase PF00483.23 gi|126178156|ref|YP_001046121.1| - 4.4e-40 137.8 0.0 5e-40 137.6 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|126178156|ref|YP_001046121.1| - 4.1e-15 56.5 0.1 5.6e-15 56.1 0.1 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|126178156|ref|YP_001046121.1| - 1.5e-06 28.1 0.0 1e-05 25.4 0.0 2.0 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|126178156|ref|YP_001046121.1| - 0.0059 16.4 0.1 0.0081 16.0 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Acylphosphatase PF00708.18 gi|126178157|ref|YP_001046122.1| - 7.3e-23 80.8 0.3 1.5e-22 79.8 0.3 1.5 2 0 0 2 2 2 1 Acylphosphatase TMF_TATA_bd PF12325.8 gi|126178157|ref|YP_001046122.1| - 0.022 15.0 1.6 0.033 14.4 1.0 1.6 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DUF1664 PF07889.12 gi|126178157|ref|YP_001046122.1| - 0.11 12.5 1.3 0.3 11.1 1.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) UDPG_MGDP_dh_N PF03721.14 gi|126178158|ref|YP_001046123.1| - 6.9e-55 185.5 0.0 9.7e-55 185.0 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|126178158|ref|YP_001046123.1| - 7.2e-38 128.7 0.0 1.4e-37 127.8 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|126178158|ref|YP_001046123.1| - 2.1e-26 92.3 0.0 4.1e-26 91.4 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Pyr_redox_2 PF07992.14 gi|126178158|ref|YP_001046123.1| - 0.00016 21.0 0.2 0.0003 20.1 0.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|126178158|ref|YP_001046123.1| - 0.00077 20.0 0.4 0.0021 18.6 0.4 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|126178158|ref|YP_001046123.1| - 0.011 15.7 0.1 0.02 14.8 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|126178158|ref|YP_001046123.1| - 0.066 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.6 gi|126178158|ref|YP_001046123.1| - 0.091 13.0 0.4 0.091 13.0 0.4 2.2 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|126178158|ref|YP_001046123.1| - 0.11 11.7 0.4 0.16 11.2 0.4 1.2 1 0 0 1 1 1 0 FAD binding domain Polbeta PF18765.1 gi|126178159|ref|YP_001046124.1| - 0.00047 20.2 0.0 0.00066 19.7 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|126178159|ref|YP_001046124.1| - 0.0045 17.2 0.0 0.0075 16.5 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|126178160|ref|YP_001046125.1| - 2.1e-12 46.9 0.0 2.7e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|126178161|ref|YP_001046126.1| - 8.9e-26 90.1 0.0 1.1e-25 89.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 ParE_toxin PF05016.15 gi|126178163|ref|YP_001046128.1| - 0.043 14.4 0.2 0.051 14.2 0.2 1.1 1 0 0 1 1 1 0 ParE toxin of type II toxin-antitoxin system, parDE Glycos_transf_2 PF00535.26 gi|126178165|ref|YP_001046130.1| - 1.7e-23 83.3 0.0 2.4e-23 82.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|126178165|ref|YP_001046130.1| - 8.7e-06 25.8 0.0 1.2e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|126178165|ref|YP_001046130.1| - 0.07 13.7 0.0 0.14 12.7 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF2721 PF11026.8 gi|126178165|ref|YP_001046130.1| - 2 8.3 12.7 0.22 11.4 2.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) LAM_C PF12544.8 gi|126178166|ref|YP_001046131.1| - 7.2e-43 145.8 0.0 1.1e-42 145.2 0.0 1.3 1 0 0 1 1 1 1 Lysine-2,3-aminomutase Radical_SAM PF04055.21 gi|126178166|ref|YP_001046131.1| - 3.6e-13 50.2 0.4 2e-12 47.8 0.1 2.3 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|126178166|ref|YP_001046131.1| - 0.0048 17.2 0.1 0.018 15.3 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|126178166|ref|YP_001046131.1| - 0.0064 16.6 0.0 0.012 15.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Acetyltransf_1 PF00583.25 gi|126178167|ref|YP_001046132.1| - 6.3e-05 23.2 0.0 0.00012 22.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|126178167|ref|YP_001046132.1| - 0.00018 21.4 0.0 0.00073 19.5 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|126178167|ref|YP_001046132.1| - 0.0068 16.5 0.1 0.018 15.1 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|126178167|ref|YP_001046132.1| - 0.03 14.7 0.0 0.055 13.9 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain CCG PF02754.16 gi|126178171|ref|YP_001046136.1| - 3.5e-33 113.6 9.1 7.9e-16 58.1 0.2 3.9 3 0 0 3 3 3 2 Cysteine-rich domain Fer2_3 PF13085.6 gi|126178171|ref|YP_001046136.1| - 4.7e-26 90.9 0.0 1.1e-25 89.8 0.0 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|126178171|ref|YP_001046136.1| - 5.1e-12 46.1 6.1 5.1e-12 46.1 6.1 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer2_4 PF13510.6 gi|126178171|ref|YP_001046136.1| - 2.4e-09 37.1 0.6 1.1e-08 35.0 0.6 2.1 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_17 PF13534.6 gi|126178171|ref|YP_001046136.1| - 1.5e-08 35.0 6.9 1.5e-08 35.0 6.9 3.3 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126178171|ref|YP_001046136.1| - 1.2e-06 28.6 9.5 1.2e-06 28.6 9.5 3.6 4 1 0 4 4 4 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126178171|ref|YP_001046136.1| - 1.8e-05 25.3 8.6 1.8e-05 25.3 8.6 4.0 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126178171|ref|YP_001046136.1| - 4.9e-05 23.4 25.7 0.00018 21.6 15.2 4.2 4 1 2 6 6 6 3 4Fe-4S dicluster domain Fer2 PF00111.27 gi|126178171|ref|YP_001046136.1| - 0.00038 20.4 1.0 0.00038 20.4 1.0 2.8 3 0 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Fer4_18 PF13746.6 gi|126178171|ref|YP_001046136.1| - 0.021 15.0 0.2 0.021 15.0 0.2 3.4 4 0 0 4 4 4 0 4Fe-4S dicluster domain FAD_binding_2 PF00890.24 gi|126178172|ref|YP_001046137.1| - 1.6e-93 314.1 11.3 2e-93 313.8 11.3 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|126178172|ref|YP_001046137.1| - 6.3e-12 45.6 0.1 1.7e-11 44.2 0.1 1.7 1 1 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|126178172|ref|YP_001046137.1| - 3.4e-08 33.1 1.4 0.00086 18.6 0.5 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|126178172|ref|YP_001046137.1| - 0.0081 14.9 6.4 1.7 7.2 0.0 3.0 3 0 0 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.7 gi|126178172|ref|YP_001046137.1| - 0.013 14.8 4.5 0.018 14.4 4.1 1.4 1 1 0 1 1 1 0 FAD dependent oxidoreductase DAO PF01266.24 gi|126178172|ref|YP_001046137.1| - 0.061 12.9 10.4 2.3 7.7 9.8 2.7 1 1 1 2 2 2 0 FAD dependent oxidoreductase Thi4 PF01946.17 gi|126178172|ref|YP_001046137.1| - 0.12 11.6 4.9 1.3 8.2 0.7 2.7 3 0 0 3 3 3 0 Thi4 family AlaDh_PNT_C PF01262.21 gi|126178172|ref|YP_001046137.1| - 0.22 10.8 3.8 0.42 9.9 3.8 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|126178172|ref|YP_001046137.1| - 0.33 10.0 5.5 0.36 9.9 2.3 2.4 3 0 0 3 3 3 0 Glucose inhibited division protein A AA_kinase PF00696.28 gi|126178173|ref|YP_001046138.1| - 1.8e-50 171.8 1.3 3.4e-50 170.9 1.3 1.5 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.6 gi|126178173|ref|YP_001046138.1| - 5.2e-20 71.0 2.0 1.5e-09 37.5 0.2 3.2 3 0 0 3 3 3 2 ACT domain ACT PF01842.25 gi|126178173|ref|YP_001046138.1| - 3.3e-18 65.1 6.5 1.1e-09 37.8 0.1 3.5 4 0 0 4 4 4 2 ACT domain Tetrabrachion PF11401.8 gi|126178173|ref|YP_001046138.1| - 0.082 12.9 0.1 0.18 11.8 0.1 1.6 1 0 0 1 1 1 0 Tetrabrachion DUF4124 PF13511.6 gi|126178173|ref|YP_001046138.1| - 0.11 12.9 0.3 0.23 11.8 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4124) ACT_6 PF13740.6 gi|126178173|ref|YP_001046138.1| - 0.12 12.4 0.6 0.48 10.4 0.0 2.4 3 0 0 3 3 3 0 ACT domain AIRS_C PF02769.22 gi|126178174|ref|YP_001046139.1| - 2.4e-25 89.5 0.0 3.9e-25 88.8 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|126178174|ref|YP_001046139.1| - 4.1e-12 46.6 0.9 9.6e-12 45.4 0.9 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF362 PF04015.12 gi|126178175|ref|YP_001046140.1| - 6.9e-41 140.7 0.0 9.3e-41 140.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|126178175|ref|YP_001046140.1| - 1e-12 47.3 15.3 1.3e-07 31.1 4.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126178175|ref|YP_001046140.1| - 6.9e-12 45.8 37.4 3.9e-08 33.8 14.2 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126178175|ref|YP_001046140.1| - 4.6e-11 42.1 13.6 2.1e-05 24.3 2.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|126178175|ref|YP_001046140.1| - 8.2e-11 41.5 13.9 3.5e-06 26.9 3.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126178175|ref|YP_001046140.1| - 7.5e-10 38.8 24.4 5e-07 29.7 14.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126178175|ref|YP_001046140.1| - 1.8e-09 38.4 8.8 0.00028 21.8 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|126178175|ref|YP_001046140.1| - 1.9e-08 34.3 18.4 3.3e-06 27.1 10.1 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126178175|ref|YP_001046140.1| - 3.8e-08 33.4 23.2 2.2e-07 30.9 12.3 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126178175|ref|YP_001046140.1| - 1.3e-06 28.7 6.4 0.0073 16.7 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126178175|ref|YP_001046140.1| - 1.5e-05 25.4 9.3 0.027 15.0 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126178175|ref|YP_001046140.1| - 3.8e-05 23.9 14.4 0.013 15.9 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Lar_N PF09861.9 gi|126178175|ref|YP_001046140.1| - 0.00028 20.1 0.1 0.00045 19.4 0.1 1.2 1 0 0 1 1 1 1 Lactate racemase N-terminal domain Fer4_18 PF13746.6 gi|126178175|ref|YP_001046140.1| - 0.0035 17.5 2.1 0.006 16.8 2.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126178175|ref|YP_001046140.1| - 0.0046 17.8 20.9 0.02 15.8 6.6 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|126178175|ref|YP_001046140.1| - 0.084 13.6 11.4 47 4.8 11.3 2.6 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|126178175|ref|YP_001046140.1| - 0.39 11.3 11.6 1.6 9.3 2.0 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|126178175|ref|YP_001046140.1| - 0.98 10.3 20.5 0.61 11.0 3.6 2.7 2 1 0 3 3 2 0 4Fe-4S dicluster domain SCIFF PF13165.6 gi|126178175|ref|YP_001046140.1| - 3.5 7.7 7.8 2 8.4 0.8 2.4 2 0 0 2 2 2 0 Six-cysteine peptide SCIFF FMN_red PF03358.15 gi|126178176|ref|YP_001046141.1| - 2e-26 92.6 0.0 2.5e-26 92.3 0.0 1.0 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|126178176|ref|YP_001046141.1| - 0.017 14.8 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin-like fold Pterin_4a PF01329.19 gi|126178177|ref|YP_001046142.1| - 1e-20 73.7 0.0 1.2e-20 73.5 0.0 1.1 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase Thioredoxin PF00085.20 gi|126178178|ref|YP_001046143.1| - 4.4e-27 94.1 0.0 5.3e-27 93.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|126178178|ref|YP_001046143.1| - 5.3e-06 26.8 0.0 0.00037 20.9 0.0 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain OST3_OST6 PF04756.13 gi|126178178|ref|YP_001046143.1| - 0.00026 20.5 0.0 0.0004 19.8 0.0 1.3 1 1 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_9 PF14595.6 gi|126178178|ref|YP_001046143.1| - 0.0003 20.6 0.0 0.00034 20.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|126178178|ref|YP_001046143.1| - 0.00055 20.2 0.0 0.033 14.5 0.0 2.2 1 1 1 2 2 2 1 Thioredoxin-like HyaE PF07449.11 gi|126178178|ref|YP_001046143.1| - 0.0078 16.2 0.0 0.014 15.3 0.0 1.6 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_7 PF13899.6 gi|126178178|ref|YP_001046143.1| - 0.01 16.0 0.0 0.015 15.4 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like Redoxin PF08534.10 gi|126178178|ref|YP_001046143.1| - 0.019 14.7 0.0 0.024 14.4 0.0 1.2 1 0 0 1 1 1 0 Redoxin DUF953 PF06110.11 gi|126178178|ref|YP_001046143.1| - 0.02 14.5 0.2 0.13 11.9 0.2 2.0 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) KaiB PF07689.12 gi|126178178|ref|YP_001046143.1| - 0.043 13.5 0.0 0.094 12.5 0.0 1.5 1 0 0 1 1 1 0 KaiB domain AhpC-TSA PF00578.21 gi|126178178|ref|YP_001046143.1| - 0.17 11.8 0.0 0.28 11.1 0.0 1.4 1 1 0 1 1 1 0 AhpC/TSA family VEK-30 PF12107.8 gi|126178178|ref|YP_001046143.1| - 0.21 11.6 5.7 0.45 10.5 5.7 1.6 1 0 0 1 1 1 0 Plasminogen (Pg) ligand in fibrinolytic pathway EF-1_beta_acid PF10587.9 gi|126178178|ref|YP_001046143.1| - 0.61 10.6 3.9 1.2 9.6 3.9 1.5 1 0 0 1 1 1 0 Eukaryotic elongation factor 1 beta central acidic region GATase_7 PF13537.6 gi|126178179|ref|YP_001046144.1| - 3.6e-19 68.9 0.0 8.1e-19 67.7 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|126178179|ref|YP_001046144.1| - 6.3e-19 68.5 0.0 1.2e-18 67.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|126178179|ref|YP_001046144.1| - 1.3e-07 30.8 0.0 1.9e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|126178179|ref|YP_001046144.1| - 6.5e-06 25.8 0.1 1.4e-05 24.7 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain MctB PF11382.8 gi|126178179|ref|YP_001046144.1| - 0.073 12.8 0.1 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 Copper transport outer membrane protein, MctB Ribosomal_L37e PF01907.19 gi|126178180|ref|YP_001046145.1| - 1.1e-24 86.3 10.8 1.3e-24 86.1 10.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.7 gi|126178180|ref|YP_001046145.1| - 0.012 15.6 1.6 0.015 15.3 1.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L32p PF01783.23 gi|126178180|ref|YP_001046145.1| - 0.021 15.0 5.7 0.021 15.0 5.7 1.9 1 1 1 2 2 2 0 Ribosomal L32p protein family DUF35_N PF12172.8 gi|126178180|ref|YP_001046145.1| - 0.026 14.4 2.9 0.038 13.9 2.9 1.2 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-piccolo PF05715.13 gi|126178180|ref|YP_001046145.1| - 0.12 12.6 1.9 0.3 11.2 1.9 1.7 1 1 0 1 1 1 0 Piccolo Zn-finger zf-ribbon_3 PF13248.6 gi|126178180|ref|YP_001046145.1| - 0.13 11.7 2.6 0.26 10.7 2.7 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zn-ribbon_14 PF16503.5 gi|126178180|ref|YP_001046145.1| - 0.14 11.7 3.7 0.43 10.1 3.7 1.7 1 1 0 1 1 1 0 Zinc-ribbon MraY_sig1 PF10555.9 gi|126178180|ref|YP_001046145.1| - 0.47 10.1 4.6 0.4 10.3 1.3 2.0 2 0 0 2 2 2 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 zf-RING_10 PF16685.5 gi|126178180|ref|YP_001046145.1| - 0.65 10.2 5.0 21 5.3 5.0 2.0 1 1 0 1 1 1 0 zinc RING finger of MSL2 zf-HYPF PF07503.12 gi|126178180|ref|YP_001046145.1| - 0.8 9.5 4.7 9.2 6.1 0.8 2.3 2 0 0 2 2 2 0 HypF finger LSM PF01423.22 gi|126178181|ref|YP_001046146.1| - 1.4e-20 72.7 0.1 1.7e-20 72.5 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|126178181|ref|YP_001046146.1| - 0.0074 16.4 0.0 0.0096 16.0 0.0 1.3 1 1 0 1 1 1 1 Ataxin 2 SM domain Hfq PF17209.3 gi|126178181|ref|YP_001046146.1| - 0.061 13.0 0.0 0.079 12.6 0.0 1.2 1 0 0 1 1 1 0 Hfq protein PUA PF01472.20 gi|126178182|ref|YP_001046147.1| - 1.9e-19 69.4 0.5 2.8e-19 68.8 0.5 1.3 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|126178182|ref|YP_001046147.1| - 7.2e-06 26.2 0.0 1.2e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) Pre-PUA PF17832.1 gi|126178182|ref|YP_001046147.1| - 0.021 15.5 0.0 0.072 13.8 0.0 1.8 1 1 0 1 1 1 0 Pre-PUA-like domain UPF0113 PF03657.13 gi|126178182|ref|YP_001046147.1| - 0.022 15.0 0.0 0.039 14.2 0.0 1.4 1 0 0 1 1 1 0 UPF0113 PUA domain SepF PF04472.12 gi|126178183|ref|YP_001046148.1| - 4.7e-14 52.4 2.1 5.9e-14 52.1 2.1 1.1 1 0 0 1 1 1 1 Cell division protein SepF Transposase_31 PF04754.12 gi|126178183|ref|YP_001046148.1| - 0.17 11.4 0.0 0.2 11.3 0.0 1.1 1 0 0 1 1 1 0 Putative transposase, YhgA-like zf-ZPR1 PF03367.13 gi|126178184|ref|YP_001046149.1| - 1.7e-37 128.7 0.0 2e-37 128.5 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.6 gi|126178184|ref|YP_001046149.1| - 0.12 12.8 0.1 0.25 11.8 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-C4_Topoisom PF01396.19 gi|126178184|ref|YP_001046149.1| - 0.13 12.1 0.4 0.61 9.9 0.1 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger CpXC PF14353.6 gi|126178184|ref|YP_001046149.1| - 0.17 11.9 0.2 49 4.0 0.0 3.0 3 0 0 3 3 3 0 CpXC protein Prim_Zn_Ribbon PF08273.12 gi|126178184|ref|YP_001046149.1| - 0.57 10.5 3.0 3.5 8.0 0.9 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Rubredoxin_2 PF18073.1 gi|126178184|ref|YP_001046149.1| - 2.1 8.2 4.7 18 5.1 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Acetyltransf_10 PF13673.7 gi|126178186|ref|YP_001046151.1| - 9.4e-07 28.8 0.0 1.2e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|126178186|ref|YP_001046151.1| - 1.3e-05 25.5 0.0 2.1e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|126178186|ref|YP_001046151.1| - 1.4e-05 25.3 0.0 2.2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family GNAT_acetyltran PF12746.7 gi|126178186|ref|YP_001046151.1| - 0.00012 21.7 0.0 0.00017 21.3 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase FR47 PF08445.10 gi|126178186|ref|YP_001046151.1| - 0.013 15.5 0.0 0.41 10.7 0.0 2.5 2 1 0 2 2 2 0 FR47-like protein Acetyltransf_3 PF13302.7 gi|126178186|ref|YP_001046151.1| - 0.057 14.1 0.0 0.071 13.8 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PAS_4 PF08448.10 gi|126178187|ref|YP_001046152.1| - 5.6e-11 42.7 0.1 1.3e-10 41.5 0.1 1.6 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|126178187|ref|YP_001046152.1| - 6.5e-10 39.0 0.0 1.5e-09 37.8 0.0 1.7 1 1 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|126178187|ref|YP_001046152.1| - 6.5e-06 26.6 0.0 1.2e-05 25.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|126178187|ref|YP_001046152.1| - 0.00014 22.0 0.0 0.0016 18.6 0.0 2.4 1 1 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|126178187|ref|YP_001046152.1| - 0.00031 20.7 0.0 0.00088 19.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain DUF4118 PF13493.6 gi|126178187|ref|YP_001046152.1| - 0.0064 16.3 5.0 0.013 15.3 5.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) HATPase_c_3 PF13589.6 gi|126178187|ref|YP_001046152.1| - 0.0095 15.8 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|126178187|ref|YP_001046152.1| - 0.15 12.0 0.0 0.35 10.8 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Response_reg PF00072.24 gi|126178188|ref|YP_001046153.1| - 9.5e-31 106.3 0.9 2.1e-30 105.2 0.1 2.0 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.26 gi|126178188|ref|YP_001046153.1| - 3.2e-09 37.3 0.0 6.7e-09 36.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|126178188|ref|YP_001046153.1| - 0.00049 19.8 0.6 0.0021 17.8 0.1 2.3 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain Acyl-CoA_dh_C PF12806.7 gi|126178188|ref|YP_001046153.1| - 0.019 15.1 0.4 0.049 13.8 0.4 1.6 1 0 0 1 1 1 0 Acetyl-CoA dehydrogenase C-terminal like DUF4795 PF16043.5 gi|126178188|ref|YP_001046153.1| - 0.033 13.8 0.8 0.052 13.1 0.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) Sec8_exocyst PF04048.14 gi|126178188|ref|YP_001046153.1| - 0.043 13.7 1.5 0.092 12.6 1.5 1.5 1 0 0 1 1 1 0 Sec8 exocyst complex component specific domain Phage_lysis PF03245.13 gi|126178188|ref|YP_001046153.1| - 0.053 13.7 5.7 0.11 12.7 5.7 1.4 1 0 0 1 1 1 0 Bacteriophage Rz lysis protein CREPT PF16566.5 gi|126178188|ref|YP_001046153.1| - 0.059 13.5 6.4 0.051 13.7 4.6 1.7 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour Laminin_II PF06009.12 gi|126178188|ref|YP_001046153.1| - 0.072 13.1 3.7 0.21 11.6 3.7 1.7 1 0 0 1 1 1 0 Laminin Domain II DUF4763 PF15960.5 gi|126178188|ref|YP_001046153.1| - 0.078 12.3 5.3 0.13 11.6 5.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) Spc7 PF08317.11 gi|126178188|ref|YP_001046153.1| - 0.11 11.4 5.7 0.17 10.7 5.7 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein B12-binding PF02310.19 gi|126178188|ref|YP_001046153.1| - 0.11 12.5 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 B12 binding domain OmpH PF03938.14 gi|126178188|ref|YP_001046153.1| - 0.12 12.7 4.8 0.13 12.6 3.6 1.7 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) TMF_TATA_bd PF12325.8 gi|126178188|ref|YP_001046153.1| - 0.22 11.7 7.8 0.37 11.0 6.6 1.9 3 0 0 3 3 2 0 TATA element modulatory factor 1 TATA binding ZapB PF06005.12 gi|126178188|ref|YP_001046153.1| - 0.25 11.8 13.8 0.69 10.4 13.8 1.9 1 1 0 1 1 1 0 Cell division protein ZapB ApoLp-III PF07464.11 gi|126178188|ref|YP_001046153.1| - 0.55 10.3 6.3 0.67 10.0 3.3 2.1 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) JIP_LZII PF16471.5 gi|126178188|ref|YP_001046153.1| - 1.2 9.4 7.9 2.8 8.2 7.9 1.6 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II Response_reg PF00072.24 gi|126178189|ref|YP_001046154.1| - 3.6e-23 81.9 0.1 6.8e-23 81.0 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain CheW PF01584.19 gi|126178189|ref|YP_001046154.1| - 1.2e-22 80.1 2.7 2.6e-22 79.0 2.7 1.6 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.26 gi|126178189|ref|YP_001046154.1| - 4.8e-15 56.0 0.1 9.5e-15 55.1 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.23 gi|126178189|ref|YP_001046154.1| - 1.2e-11 44.7 0.0 4.5e-11 42.8 0.0 2.1 1 0 0 1 1 1 1 Hpt domain HATPase_c_2 PF13581.6 gi|126178189|ref|YP_001046154.1| - 0.0031 17.5 0.0 0.0074 16.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|126178189|ref|YP_001046154.1| - 0.0037 17.1 0.0 0.0076 16.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cache_3-Cache_2 PF17201.4 gi|126178190|ref|YP_001046155.1| - 9.3e-73 245.0 3.5 9.3e-73 245.0 3.5 2.2 3 0 0 3 3 3 1 Cache 3/Cache 2 fusion domain MCPsignal PF00015.21 gi|126178190|ref|YP_001046155.1| - 4e-35 121.2 37.6 2.9e-34 118.4 27.8 3.1 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain sCache_3_3 PF17202.4 gi|126178190|ref|YP_001046155.1| - 5.7e-34 116.8 2.7 5.7e-34 116.8 2.7 2.6 3 0 0 3 3 3 1 Single cache domain 3 dCache_1 PF02743.18 gi|126178190|ref|YP_001046155.1| - 1.5e-11 44.6 4.4 1.5e-11 44.6 4.4 3.0 2 1 0 2 2 2 1 Cache domain HAMP PF00672.25 gi|126178190|ref|YP_001046155.1| - 4e-11 43.1 6.4 4.1e-09 36.7 0.5 5.1 4 1 1 5 5 5 1 HAMP domain sCache_3_2 PF17203.4 gi|126178190|ref|YP_001046155.1| - 1.7e-09 37.9 1.3 1.7e-09 37.9 1.3 4.0 3 2 2 5 5 5 1 Single cache domain 3 dCache_2 PF08269.11 gi|126178190|ref|YP_001046155.1| - 1.5e-06 27.7 9.1 5e-06 25.9 0.1 3.5 3 1 0 3 3 3 1 Cache domain sCache_2 PF17200.4 gi|126178190|ref|YP_001046155.1| - 1.5e-06 28.2 3.1 3.6e-06 26.9 0.2 3.0 2 1 0 2 2 2 1 Single Cache domain 2 dCache_3 PF14827.6 gi|126178190|ref|YP_001046155.1| - 0.0012 18.5 3.1 0.0058 16.3 0.1 2.6 2 0 0 2 2 2 1 Double sensory domain of two-component sensor kinase DUF948 PF06103.11 gi|126178190|ref|YP_001046155.1| - 0.061 13.6 24.5 1 9.7 1.9 6.1 1 1 4 5 5 5 0 Bacterial protein of unknown function (DUF948) DNA_repr_REX1B PF14966.6 gi|126178190|ref|YP_001046155.1| - 0.7 10.6 13.7 0.18 12.5 3.2 4.4 3 2 1 4 4 4 0 DNA repair REX1-B CheW PF01584.19 gi|126178191|ref|YP_001046156.1| - 1.8e-42 144.3 0.5 1.7e-26 92.5 0.1 2.3 2 1 0 2 2 2 2 CheW-like domain HU-CCDC81_bac_1 PF18174.1 gi|126178191|ref|YP_001046156.1| - 0.059 13.3 0.0 0.16 11.9 0.0 1.7 2 0 0 2 2 2 0 CCDC81-like prokaryotic HU domain 1 DUF4097 PF13349.6 gi|126178192|ref|YP_001046157.1| - 2.9e-09 36.6 4.1 1.1e-08 34.8 4.1 2.0 1 1 0 1 1 1 1 Putative adhesin ABC2_membrane PF01061.24 gi|126178193|ref|YP_001046158.1| - 6.7e-25 87.7 28.7 6.7e-25 87.7 28.7 1.9 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|126178193|ref|YP_001046158.1| - 1.3e-13 50.8 31.1 1.3e-13 50.8 31.1 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|126178194|ref|YP_001046159.1| - 3.4e-34 118.3 0.0 6.8e-34 117.3 0.0 1.5 2 0 0 2 2 2 1 ABC transporter DUF4162 PF13732.6 gi|126178194|ref|YP_001046159.1| - 1e-12 48.6 0.0 2.2e-12 47.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_21 PF13304.6 gi|126178194|ref|YP_001046159.1| - 5.3e-12 46.2 0.5 8.2e-08 32.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|126178194|ref|YP_001046159.1| - 0.00028 21.4 1.3 0.00053 20.5 1.2 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|126178194|ref|YP_001046159.1| - 0.0006 19.3 0.0 0.0014 18.1 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|126178194|ref|YP_001046159.1| - 0.0011 18.6 0.1 0.0021 17.8 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|126178194|ref|YP_001046159.1| - 0.0026 17.6 0.0 0.47 10.1 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|126178194|ref|YP_001046159.1| - 0.0032 17.7 0.2 0.015 15.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|126178194|ref|YP_001046159.1| - 0.0054 16.6 0.0 0.013 15.5 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_27 PF13514.6 gi|126178194|ref|YP_001046159.1| - 0.019 14.5 0.1 0.037 13.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|126178194|ref|YP_001046159.1| - 0.027 14.1 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.6 gi|126178194|ref|YP_001046159.1| - 0.068 13.4 0.0 0.54 10.5 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 gi|126178194|ref|YP_001046159.1| - 0.093 12.1 0.0 0.23 10.8 0.0 1.8 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|126178194|ref|YP_001046159.1| - 0.12 12.8 0.0 0.28 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain TPP_enzyme_M PF00205.22 gi|126178195|ref|YP_001046160.1| - 0.096 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain ATP_synth_reg PF14960.6 gi|126178196|ref|YP_001046161.1| - 0.00062 19.2 1.3 0.00062 19.2 1.3 2.0 1 1 1 2 2 2 1 ATP synthase regulation DUF2207 PF09972.9 gi|126178196|ref|YP_001046161.1| - 0.1 11.4 1.7 0.1 11.3 1.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2061 PF09834.9 gi|126178196|ref|YP_001046161.1| - 0.2 12.2 6.3 0.32 11.5 6.3 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2061) DUF5325 PF17259.2 gi|126178196|ref|YP_001046161.1| - 0.63 10.0 6.4 0.87 9.5 6.4 1.3 1 1 0 1 1 1 0 Family of unknown function (DUF5325) Amidinotransf PF02274.17 gi|126178197|ref|YP_001046162.1| - 8.2e-38 130.3 0.0 2.2e-37 128.9 0.0 1.8 1 1 0 1 1 1 1 Amidinotransferase AA_kinase PF00696.28 gi|126178198|ref|YP_001046163.1| - 6e-30 104.6 0.0 1.1e-29 103.7 0.0 1.4 1 1 0 1 1 1 1 Amino acid kinase family Phage_tail_S PF05069.13 gi|126178198|ref|YP_001046163.1| - 0.015 15.2 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 Phage virion morphogenesis family DUF5518 PF17647.1 gi|126178199|ref|YP_001046164.1| - 8.6e-14 51.7 43.4 1e-13 51.5 43.4 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) DUF5518 PF17647.1 gi|126178200|ref|YP_001046165.1| - 2.6e-08 34.0 39.4 3e-08 33.8 39.4 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) MFS_1 PF07690.16 gi|126178201|ref|YP_001046166.1| - 1.4e-13 50.5 46.0 1.7e-08 33.8 29.9 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1 PF07690.16 gi|126178202|ref|YP_001046167.1| - 7.7e-55 186.2 50.0 7.7e-55 186.2 50.0 2.5 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|126178202|ref|YP_001046167.1| - 2.8e-05 22.7 6.5 2.8e-05 22.7 6.5 2.7 2 1 0 2 2 2 1 Transmembrane secretion effector MFS_1_like PF12832.7 gi|126178202|ref|YP_001046167.1| - 0.00079 18.4 24.0 0.0026 16.7 8.2 3.0 1 1 0 3 3 3 2 MFS_1 like family MFS_2 PF13347.6 gi|126178202|ref|YP_001046167.1| - 0.011 14.3 47.5 0.004 15.8 28.5 3.1 1 1 2 3 3 3 0 MFS/sugar transport protein TOM13 PF08219.11 gi|126178202|ref|YP_001046167.1| - 0.21 11.5 0.0 0.21 11.5 0.0 2.5 3 0 0 3 3 3 0 Outer membrane protein TOM13 DUF87 PF01935.17 gi|126178203|ref|YP_001046168.1| - 1.3e-12 48.3 0.0 2e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|126178203|ref|YP_001046168.1| - 0.0055 17.0 0.0 0.023 15.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain DUF853 PF05872.12 gi|126178203|ref|YP_001046168.1| - 0.01 14.5 0.0 0.091 11.3 0.0 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) Rubredoxin PF00301.20 gi|126178204|ref|YP_001046169.1| - 9.3e-23 80.0 2.5 1e-22 79.9 2.5 1.0 1 0 0 1 1 1 1 Rubredoxin PHD_4 PF16866.5 gi|126178204|ref|YP_001046169.1| - 9.8e-05 22.4 0.0 0.00012 22.1 0.0 1.2 1 0 0 1 1 1 1 PHD-finger HalOD2 PF18547.1 gi|126178204|ref|YP_001046169.1| - 0.00026 20.8 1.2 0.038 13.9 1.4 2.1 1 1 0 1 1 1 1 Halobacterial output domain 2 Zn-ribbon_8 PF09723.10 gi|126178204|ref|YP_001046169.1| - 0.001 19.1 3.8 0.014 15.5 3.8 2.0 1 1 0 1 1 1 1 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|126178204|ref|YP_001046169.1| - 0.0014 18.4 3.5 0.34 10.8 0.3 2.1 2 0 0 2 2 2 2 SprT-like zinc ribbon domain Desulfoferrod_N PF06397.12 gi|126178204|ref|YP_001046169.1| - 0.0058 16.2 0.9 0.29 10.8 0.5 2.1 2 0 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain TF_Zn_Ribbon PF08271.12 gi|126178204|ref|YP_001046169.1| - 0.0084 15.6 1.5 1.4 8.5 0.1 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding DUF35_N PF12172.8 gi|126178204|ref|YP_001046169.1| - 0.015 15.2 4.3 1.2 9.0 0.3 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin_2 PF18073.1 gi|126178204|ref|YP_001046169.1| - 0.021 14.6 6.8 0.89 9.3 1.5 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-C2H2_11 PF16622.5 gi|126178204|ref|YP_001046169.1| - 0.036 13.8 0.6 1 9.2 0.1 2.1 2 0 0 2 2 2 0 zinc-finger C2H2-type RbpA PF13397.6 gi|126178204|ref|YP_001046169.1| - 0.036 14.7 0.4 0.048 14.3 0.2 1.3 1 1 0 1 1 1 0 RNA polymerase-binding protein Mu-like_Com PF10122.9 gi|126178204|ref|YP_001046169.1| - 0.04 13.4 0.8 0.061 12.8 0.1 1.7 2 0 0 2 2 2 0 Mu-like prophage protein Com zinc_ribbon_10 PF10058.9 gi|126178204|ref|YP_001046169.1| - 0.042 13.6 0.7 1.3 8.8 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-ribbon_3 PF13248.6 gi|126178204|ref|YP_001046169.1| - 0.054 12.9 3.2 0.08 12.4 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.18 gi|126178204|ref|YP_001046169.1| - 0.069 12.5 0.9 0.069 12.5 0.9 2.0 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-C2H2_3 PF13878.6 gi|126178204|ref|YP_001046169.1| - 0.076 12.8 1.3 1.8 8.5 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO UPF0547 PF10571.9 gi|126178204|ref|YP_001046169.1| - 0.11 12.6 4.7 2.4 8.3 0.2 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf_UBZ PF18439.1 gi|126178204|ref|YP_001046169.1| - 0.12 12.0 2.5 0.32 10.6 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger OrfB_Zn_ribbon PF07282.11 gi|126178204|ref|YP_001046169.1| - 0.19 11.7 1.6 1.9 8.4 1.6 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-CCHC_2 PF13696.6 gi|126178204|ref|YP_001046169.1| - 0.19 11.6 5.7 4.5 7.2 0.4 2.2 2 0 0 2 2 2 0 Zinc knuckle zf-HIT PF04438.16 gi|126178204|ref|YP_001046169.1| - 0.33 10.9 5.9 0.99 9.3 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger zinc_ribbon_2 PF13240.6 gi|126178204|ref|YP_001046169.1| - 0.34 10.7 5.3 0.64 9.8 1.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|126178204|ref|YP_001046169.1| - 0.43 10.7 4.7 1.5 9.0 0.4 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zn-ribbon_14 PF16503.5 gi|126178204|ref|YP_001046169.1| - 0.47 10.0 4.4 4.8 6.8 1.0 2.1 2 0 0 2 2 2 0 Zinc-ribbon zf-H2C2_2 PF13465.6 gi|126178204|ref|YP_001046169.1| - 0.55 10.8 3.7 6.4 7.4 0.5 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2_4 PF13894.6 gi|126178204|ref|YP_001046169.1| - 1.6 9.8 5.3 23 6.2 0.3 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|126178204|ref|YP_001046169.1| - 3.6 8.2 6.1 9.1 7.0 1.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Rubredoxin PF00301.20 gi|126178205|ref|YP_001046170.1| - 1.6e-19 69.6 0.5 1.8e-19 69.5 0.5 1.0 1 0 0 1 1 1 1 Rubredoxin Zn-ribbon_8 PF09723.10 gi|126178205|ref|YP_001046170.1| - 0.0024 17.9 1.3 0.023 14.8 1.3 2.0 1 1 0 1 1 1 1 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|126178205|ref|YP_001046170.1| - 0.013 15.4 2.0 2.1 8.4 0.5 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Rubredoxin_2 PF18073.1 gi|126178205|ref|YP_001046170.1| - 0.019 14.7 4.2 1.6 8.5 0.6 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain HalOD2 PF18547.1 gi|126178205|ref|YP_001046170.1| - 0.031 14.2 4.7 0.37 10.7 4.7 2.0 1 1 0 1 1 1 0 Halobacterial output domain 2 TF_Zn_Ribbon PF08271.12 gi|126178205|ref|YP_001046170.1| - 0.032 13.7 0.9 0.63 9.6 0.1 2.2 2 1 0 2 2 2 0 TFIIB zinc-binding zf-RanBP PF00641.18 gi|126178205|ref|YP_001046170.1| - 0.068 12.5 1.5 0.26 10.7 0.3 2.0 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Desulfoferrod_N PF06397.12 gi|126178205|ref|YP_001046170.1| - 0.074 12.7 0.5 0.62 9.7 0.2 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain RNA_POL_M_15KD PF02150.16 gi|126178205|ref|YP_001046170.1| - 0.12 12.2 1.0 6.6 6.7 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf_UBZ PF18439.1 gi|126178205|ref|YP_001046170.1| - 0.14 11.8 1.8 0.46 10.1 0.1 2.0 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C2H2_3 PF13878.6 gi|126178205|ref|YP_001046170.1| - 0.16 11.8 1.5 2.2 8.2 0.3 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO RbpA PF13397.6 gi|126178205|ref|YP_001046170.1| - 0.18 12.4 0.2 0.2 12.3 0.1 1.3 1 1 0 1 1 1 0 RNA polymerase-binding protein ABC_tran PF00005.27 gi|126178207|ref|YP_001046172.1| - 1.8e-33 116.0 0.0 2.9e-33 115.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|126178207|ref|YP_001046172.1| - 6.1e-10 39.2 0.3 1.8e-09 37.7 0.3 1.9 1 0 0 1 1 1 1 TOBE domain TOBE_2 PF08402.10 gi|126178207|ref|YP_001046172.1| - 8.2e-09 35.5 0.2 2e-08 34.3 0.2 1.7 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|126178207|ref|YP_001046172.1| - 2.5e-07 30.8 2.6 0.0096 15.8 0.7 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126178207|ref|YP_001046172.1| - 0.0011 18.5 0.0 0.035 13.5 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.9 gi|126178207|ref|YP_001046172.1| - 0.0012 17.7 0.2 0.021 13.7 0.0 2.5 2 1 0 2 2 2 1 Predicted ATPase of the ABC class SbcCD_C PF13558.6 gi|126178207|ref|YP_001046172.1| - 0.0026 18.0 0.3 0.036 14.3 0.3 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|126178207|ref|YP_001046172.1| - 0.0029 18.0 0.7 0.028 14.8 0.7 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|126178207|ref|YP_001046172.1| - 0.0078 16.7 0.0 0.012 16.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain Asp_protease_2 PF13650.6 gi|126178207|ref|YP_001046172.1| - 0.0082 16.8 0.1 2.7 8.7 0.0 3.2 3 0 0 3 3 3 1 Aspartyl protease Mg_chelatase PF01078.21 gi|126178207|ref|YP_001046172.1| - 0.0083 15.5 0.0 0.026 13.9 0.0 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|126178207|ref|YP_001046172.1| - 0.013 15.2 0.1 0.16 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|126178207|ref|YP_001046172.1| - 0.024 14.9 0.6 0.16 12.3 0.6 2.1 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|126178207|ref|YP_001046172.1| - 0.11 12.2 0.1 0.27 11.0 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|126178207|ref|YP_001046172.1| - 0.13 12.1 0.0 0.4 10.6 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase CysA_C_terminal PF17850.1 gi|126178207|ref|YP_001046172.1| - 0.18 12.4 0.9 0.62 10.7 0.1 2.3 3 0 0 3 3 2 0 CysA C-terminal regulatory domain Heme_oxygenase PF01126.20 gi|126178207|ref|YP_001046172.1| - 0.19 11.5 0.0 0.3 10.9 0.0 1.2 1 0 0 1 1 1 0 Heme oxygenase SnoaL_2 PF12680.7 gi|126178207|ref|YP_001046172.1| - 0.92 10.2 5.1 2.9 8.6 3.7 2.4 2 1 1 3 3 3 0 SnoaL-like domain BPD_transp_1 PF00528.22 gi|126178208|ref|YP_001046173.1| - 9.3e-22 77.7 13.5 9.3e-22 77.7 13.5 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TrmO PF01980.16 gi|126178209|ref|YP_001046174.1| - 7.6e-35 119.7 0.0 9.4e-35 119.4 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O SBP_bac_11 PF13531.6 gi|126178210|ref|YP_001046175.1| - 9.1e-43 146.6 0.1 1.1e-42 146.4 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|126178210|ref|YP_001046175.1| - 6.3e-06 26.4 0.3 4.2e-05 23.7 0.3 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|126178210|ref|YP_001046175.1| - 0.00096 18.6 0.0 0.0027 17.2 0.0 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|126178210|ref|YP_001046175.1| - 0.0027 17.6 0.1 0.037 13.8 0.0 2.1 1 1 0 2 2 2 1 Bacterial extracellular solute-binding protein DUF4440 PF14534.6 gi|126178211|ref|YP_001046176.1| - 4.6e-11 43.1 0.0 5.8e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.6 gi|126178211|ref|YP_001046176.1| - 0.014 15.7 0.0 0.02 15.1 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like domain TMP-TENI PF02581.17 gi|126178212|ref|YP_001046177.1| - 2.5e-58 196.4 2.8 3e-58 196.1 2.8 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|126178212|ref|YP_001046177.1| - 0.0018 17.7 17.0 0.0083 15.6 16.9 1.8 1 1 0 1 1 1 1 Nitronate monooxygenase DUF561 PF04481.12 gi|126178212|ref|YP_001046177.1| - 0.011 14.9 1.2 0.018 14.2 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF561) Trp_syntA PF00290.20 gi|126178212|ref|YP_001046177.1| - 0.1 11.4 1.2 0.19 10.6 1.2 1.5 1 0 0 1 1 1 0 Tryptophan synthase alpha chain FlpD PF02662.16 gi|126178212|ref|YP_001046177.1| - 0.62 10.1 3.0 0.62 10.1 0.1 2.2 3 0 0 3 3 3 0 Methyl-viologen-reducing hydrogenase, delta subunit ThiG PF05690.14 gi|126178212|ref|YP_001046177.1| - 0.72 9.1 10.2 0.26 10.6 7.1 1.6 1 1 0 1 1 1 0 Thiazole biosynthesis protein ThiG HK PF02110.15 gi|126178213|ref|YP_001046178.1| - 9.8e-77 257.7 5.3 1.1e-76 257.5 5.3 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|126178213|ref|YP_001046178.1| - 2.7e-05 23.7 1.4 5.4e-05 22.7 1.4 1.5 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|126178213|ref|YP_001046178.1| - 0.0018 17.8 2.5 0.0023 17.4 2.5 1.3 1 1 0 1 1 1 1 Carbohydrate kinase MCH PF02289.16 gi|126178214|ref|YP_001046179.1| - 8.4e-120 399.7 0.0 9.4e-120 399.6 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) HTH_19 PF12844.7 gi|126178214|ref|YP_001046179.1| - 0.13 12.3 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Fer4_7 PF12838.7 gi|126178215|ref|YP_001046180.1| - 8.5e-14 51.9 20.4 1.9e-10 41.2 9.6 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|126178215|ref|YP_001046180.1| - 1.3e-12 47.0 16.1 1.4e-06 27.8 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126178215|ref|YP_001046180.1| - 1.1e-10 41.5 19.9 3.8e-07 30.1 10.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126178215|ref|YP_001046180.1| - 1.2e-10 41.3 22.4 2.1e-07 30.9 12.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126178215|ref|YP_001046180.1| - 5.2e-10 39.0 13.6 2.9e-05 23.9 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|126178215|ref|YP_001046180.1| - 1e-09 39.2 7.0 0.00017 22.5 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|126178215|ref|YP_001046180.1| - 1.5e-09 37.3 12.8 0.00015 21.6 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126178215|ref|YP_001046180.1| - 1.9e-09 37.5 9.2 3.8e-09 36.6 9.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126178215|ref|YP_001046180.1| - 4.6e-07 30.2 5.6 0.0065 16.9 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|126178215|ref|YP_001046180.1| - 1.6e-05 25.7 6.2 0.016 16.0 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126178215|ref|YP_001046180.1| - 2.7e-05 24.3 15.7 0.0031 17.9 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|126178215|ref|YP_001046180.1| - 8.8e-05 23.2 19.7 0.0057 17.5 5.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|126178215|ref|YP_001046180.1| - 0.00026 21.4 12.4 0.097 13.2 12.5 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|126178215|ref|YP_001046180.1| - 0.00046 20.9 6.4 0.25 12.1 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|126178215|ref|YP_001046180.1| - 0.0086 16.3 9.6 0.025 14.7 9.7 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|126178215|ref|YP_001046180.1| - 0.044 14.3 13.7 0.77 10.4 3.9 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Putative_PNPOx PF01243.20 gi|126178217|ref|YP_001046182.1| - 7e-09 35.8 0.0 1e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase CCG PF02754.16 gi|126178218|ref|YP_001046183.1| - 6.5e-08 32.7 3.8 2.9e-05 24.2 0.2 3.3 3 0 0 3 3 3 1 Cysteine-rich domain Fer4_9 PF13187.6 gi|126178218|ref|YP_001046183.1| - 0.00027 21.0 6.9 0.00027 21.0 6.9 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126178218|ref|YP_001046183.1| - 0.0018 18.3 7.7 0.0018 18.3 7.7 2.7 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126178218|ref|YP_001046183.1| - 0.0027 18.1 5.7 0.0027 18.1 5.7 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126178218|ref|YP_001046183.1| - 0.11 13.1 0.7 0.11 13.1 0.7 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126178218|ref|YP_001046183.1| - 1.4 9.5 17.1 0.1 13.2 6.8 3.2 3 2 0 3 3 3 0 4Fe-4S dicluster domain ParA PF10609.9 gi|126178219|ref|YP_001046184.1| - 1.1e-100 336.1 0.2 1.3e-100 335.9 0.2 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|126178219|ref|YP_001046184.1| - 4.3e-16 59.1 0.0 9.4e-16 58.0 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|126178219|ref|YP_001046184.1| - 6.7e-09 35.9 0.3 4.4e-08 33.3 0.3 1.9 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|126178219|ref|YP_001046184.1| - 2.6e-08 33.4 1.9 1.9e-06 27.3 0.1 2.7 2 1 1 3 3 3 1 Anion-transporting ATPase MipZ PF09140.11 gi|126178219|ref|YP_001046184.1| - 6.3e-07 28.9 0.1 1.4e-06 27.8 0.1 1.6 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|126178219|ref|YP_001046184.1| - 0.00045 19.7 0.1 0.0079 15.7 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.20 gi|126178219|ref|YP_001046184.1| - 0.0015 18.5 0.0 0.0022 17.9 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_25 PF13481.6 gi|126178219|ref|YP_001046184.1| - 0.0023 17.5 0.1 0.0051 16.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|126178219|ref|YP_001046184.1| - 0.0078 16.1 0.1 0.016 15.1 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase MeaB PF03308.16 gi|126178219|ref|YP_001046184.1| - 0.0079 15.2 0.1 0.013 14.5 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 gi|126178219|ref|YP_001046184.1| - 0.0097 15.7 0.1 0.02 14.7 0.0 1.5 2 0 0 2 2 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_22 PF13401.6 gi|126178219|ref|YP_001046184.1| - 0.011 16.0 0.0 0.019 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain CBP_BcsQ PF06564.12 gi|126178219|ref|YP_001046184.1| - 0.011 15.2 0.1 0.21 11.0 0.1 2.0 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ NB-ARC PF00931.22 gi|126178219|ref|YP_001046184.1| - 0.034 13.3 0.1 0.062 12.5 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.6 gi|126178219|ref|YP_001046184.1| - 0.038 14.4 0.0 0.064 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|126178219|ref|YP_001046184.1| - 0.041 13.6 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.12 gi|126178219|ref|YP_001046184.1| - 0.047 13.6 0.1 0.076 12.9 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|126178219|ref|YP_001046184.1| - 0.048 13.4 0.1 0.092 12.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|126178219|ref|YP_001046184.1| - 0.048 13.0 0.1 0.08 12.3 0.1 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI zinc_ribbon_2 PF13240.6 gi|126178219|ref|YP_001046184.1| - 0.073 12.8 0.2 0.12 12.1 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|126178219|ref|YP_001046184.1| - 0.077 13.0 0.2 0.12 12.3 0.2 1.2 1 0 0 1 1 1 0 PhnA Zinc-Ribbon RNA_helicase PF00910.22 gi|126178219|ref|YP_001046184.1| - 0.078 13.4 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 RNA helicase SRP54 PF00448.22 gi|126178219|ref|YP_001046184.1| - 0.12 12.0 0.2 0.24 11.0 0.1 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_26 PF13500.6 gi|126178219|ref|YP_001046184.1| - 0.12 12.2 1.4 11 5.8 0.1 2.7 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|126178219|ref|YP_001046184.1| - 0.15 11.9 0.0 0.83 9.4 0.0 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain PAS_4 PF08448.10 gi|126178221|ref|YP_001046186.1| - 1.9e-41 140.7 4.8 7.3e-17 61.6 0.0 4.0 2 1 2 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|126178221|ref|YP_001046186.1| - 1.6e-32 111.8 0.0 4.9e-12 46.0 0.0 3.6 4 0 0 4 4 4 3 PAS domain PAS_3 PF08447.12 gi|126178221|ref|YP_001046186.1| - 1.2e-29 102.4 0.0 1.5e-13 50.8 0.0 3.9 3 1 0 3 3 3 3 PAS fold PAS PF00989.25 gi|126178221|ref|YP_001046186.1| - 4.8e-25 87.8 0.0 7.9e-10 38.7 0.0 3.4 3 0 0 3 3 3 3 PAS fold GAF PF01590.26 gi|126178221|ref|YP_001046186.1| - 1.8e-12 48.0 0.1 2.6e-11 44.3 0.0 2.7 3 0 0 3 3 3 1 GAF domain PAS_8 PF13188.7 gi|126178221|ref|YP_001046186.1| - 4.5e-12 45.7 0.1 0.00016 21.6 0.2 4.0 3 0 0 3 3 3 2 PAS domain GAF_2 PF13185.6 gi|126178221|ref|YP_001046186.1| - 8e-08 32.7 3.5 3.7e-07 30.5 0.1 3.3 4 1 0 4 4 4 1 GAF domain GAF_3 PF13492.6 gi|126178221|ref|YP_001046186.1| - 2.2e-07 31.3 0.0 5e-07 30.1 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|126178221|ref|YP_001046186.1| - 1.2e-05 25.4 0.3 0.00064 19.9 0.0 3.2 3 0 0 3 3 3 1 PAS fold HisKA PF00512.25 gi|126178221|ref|YP_001046186.1| - 0.00029 20.8 0.0 0.0038 17.2 0.0 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain RuvA_C PF07499.13 gi|126178221|ref|YP_001046186.1| - 0.16 12.4 0.7 0.52 10.8 0.1 2.1 2 0 0 2 2 2 0 RuvA, C-terminal domain Cpn60_TCP1 PF00118.24 gi|126178222|ref|YP_001046187.1| - 9.4e-161 535.7 20.9 1.1e-160 535.6 20.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family MccV PF17508.2 gi|126178222|ref|YP_001046187.1| - 0.0024 18.4 0.3 0.013 16.1 0.1 2.4 2 0 0 2 2 2 1 Microcin V bacteriocin Pribosyltran PF00156.27 gi|126178223|ref|YP_001046188.1| - 2.2e-16 59.8 0.1 3.3e-16 59.2 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|126178223|ref|YP_001046188.1| - 0.0012 18.4 0.0 0.0017 17.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.6 gi|126178223|ref|YP_001046188.1| - 0.0059 16.1 0.1 0.013 15.0 0.1 1.5 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_23 PF13384.6 gi|126178223|ref|YP_001046188.1| - 0.033 14.0 0.0 0.072 12.9 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain GerE PF00196.19 gi|126178223|ref|YP_001046188.1| - 0.044 13.3 0.0 0.081 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_20 PF12840.7 gi|126178223|ref|YP_001046188.1| - 0.11 12.6 0.0 0.34 11.0 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain PIN_6 PF17146.4 gi|126178224|ref|YP_001046189.1| - 5.3e-18 65.3 0.0 7.9e-18 64.8 0.0 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|126178224|ref|YP_001046189.1| - 2.4e-06 27.1 0.8 5.5e-06 26.0 0.6 1.6 1 1 1 2 2 2 1 PINc domain ribonuclease zf-C3HC4_3 PF13920.6 gi|126178224|ref|YP_001046189.1| - 0.03 14.2 0.5 0.046 13.6 0.5 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) HypA PF01155.19 gi|126178224|ref|YP_001046189.1| - 0.11 12.6 0.0 0.21 11.6 0.0 1.5 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PIN_9 PF18477.1 gi|126178224|ref|YP_001046189.1| - 0.17 12.2 0.6 0.24 11.7 0.6 1.4 1 1 0 1 1 1 0 PIN like domain Zn-ribbon_8 PF09723.10 gi|126178224|ref|YP_001046189.1| - 1.1 9.4 5.0 9.4 6.4 5.0 2.3 1 1 0 1 1 1 0 Zinc ribbon domain RTC PF01137.21 gi|126178225|ref|YP_001046190.1| - 1.3e-66 224.0 0.0 1.6e-66 223.7 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|126178225|ref|YP_001046190.1| - 1.3e-09 38.5 0.5 3.1e-09 37.3 0.5 1.6 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Pribosyltran_N PF13793.6 gi|126178226|ref|YP_001046191.1| - 5.3e-23 81.2 0.0 4.1e-21 75.1 0.0 2.3 2 1 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|126178226|ref|YP_001046191.1| - 5.5e-17 61.7 0.4 1.2e-16 60.6 0.2 1.7 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|126178226|ref|YP_001046191.1| - 6.4e-09 36.1 0.4 1.2e-08 35.2 0.4 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|126178226|ref|YP_001046191.1| - 0.0015 18.1 0.1 0.0025 17.3 0.1 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase NTP_transf_3 PF12804.7 gi|126178226|ref|YP_001046191.1| - 0.023 15.0 1.1 0.22 11.9 1.1 2.2 1 1 0 1 1 1 0 MobA-like NTP transferase domain PRTase_2 PF15609.6 gi|126178226|ref|YP_001046191.1| - 0.035 13.6 0.0 0.13 11.8 0.1 1.8 1 1 1 2 2 2 0 Phosphoribosyl transferase Acetyltransf_6 PF13480.7 gi|126178226|ref|YP_001046191.1| - 0.097 12.8 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Lon_C PF05362.13 gi|126178227|ref|YP_001046192.1| - 7.9e-36 123.5 3.1 1.3e-35 122.8 3.1 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|126178227|ref|YP_001046192.1| - 2.7e-28 99.1 0.0 2.9e-21 75.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|126178227|ref|YP_001046192.1| - 4.5e-16 58.9 0.2 8.8e-10 38.3 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|126178227|ref|YP_001046192.1| - 5e-15 55.6 0.0 1.2e-08 34.8 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|126178227|ref|YP_001046192.1| - 1.7e-11 44.2 0.0 0.00022 21.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|126178227|ref|YP_001046192.1| - 3.8e-10 39.7 0.5 7.6e-10 38.7 0.5 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.29 gi|126178227|ref|YP_001046192.1| - 2.4e-07 31.2 0.0 0.0093 16.4 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|126178227|ref|YP_001046192.1| - 3.2e-07 29.7 0.0 0.0061 15.7 0.0 2.4 2 0 0 2 2 2 2 MCM P-loop domain Sigma54_activ_2 PF14532.6 gi|126178227|ref|YP_001046192.1| - 7.9e-06 26.0 0.0 0.0062 16.7 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|126178227|ref|YP_001046192.1| - 1.6e-05 24.7 0.0 0.026 14.3 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_3 PF07726.11 gi|126178227|ref|YP_001046192.1| - 1.6e-05 24.8 0.0 0.11 12.3 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|126178227|ref|YP_001046192.1| - 2.8e-05 24.4 0.0 0.0013 19.0 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_19 PF13245.6 gi|126178227|ref|YP_001046192.1| - 0.00018 21.8 0.2 0.0038 17.6 0.2 2.8 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|126178227|ref|YP_001046192.1| - 0.00039 20.0 0.0 0.0011 18.5 0.0 1.7 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_2 PF07724.14 gi|126178227|ref|YP_001046192.1| - 0.0026 17.9 0.0 1.3 9.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) PhoH PF02562.16 gi|126178227|ref|YP_001046192.1| - 0.0044 16.5 0.0 0.012 15.1 0.0 1.7 1 0 0 1 1 1 1 PhoH-like protein Parvo_NS1 PF01057.17 gi|126178227|ref|YP_001046192.1| - 0.0074 15.4 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 Birna_VP4 PF01768.16 gi|126178227|ref|YP_001046192.1| - 0.011 15.6 0.8 0.23 11.2 0.2 2.6 2 0 0 2 2 2 0 Birnavirus VP4 protein AAA_16 PF13191.6 gi|126178227|ref|YP_001046192.1| - 0.012 16.0 0.0 0.4 11.0 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|126178227|ref|YP_001046192.1| - 0.013 15.3 0.0 0.051 13.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|126178227|ref|YP_001046192.1| - 0.015 15.4 0.0 0.035 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|126178227|ref|YP_001046192.1| - 0.018 14.3 0.2 0.29 10.3 0.0 2.6 3 0 0 3 3 3 0 TIP49 P-loop domain DUF815 PF05673.13 gi|126178227|ref|YP_001046192.1| - 0.022 13.9 0.0 0.04 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) IstB_IS21 PF01695.17 gi|126178227|ref|YP_001046192.1| - 0.033 13.9 0.0 0.088 12.5 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein MgtC PF02308.16 gi|126178227|ref|YP_001046192.1| - 0.04 14.3 0.0 0.07 13.5 0.0 1.5 1 0 0 1 1 1 0 MgtC family AAA_18 PF13238.6 gi|126178227|ref|YP_001046192.1| - 0.055 14.0 0.0 0.18 12.4 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_10 PF12846.7 gi|126178227|ref|YP_001046192.1| - 0.068 12.1 0.0 0.15 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain TrwB_AAD_bind PF10412.9 gi|126178227|ref|YP_001046192.1| - 0.072 12.0 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_28 PF13521.6 gi|126178227|ref|YP_001046192.1| - 0.074 13.3 0.0 0.22 11.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|126178227|ref|YP_001046192.1| - 0.077 12.9 0.0 0.19 11.6 0.0 1.6 2 0 0 2 2 1 0 NACHT domain ABC_tran PF00005.27 gi|126178227|ref|YP_001046192.1| - 0.087 13.3 0.0 0.2 12.2 0.0 1.6 1 0 0 1 1 1 0 ABC transporter PmbA_TldD PF01523.16 gi|126178228|ref|YP_001046193.1| - 4.6e-51 174.3 0.1 5.6e-51 174.0 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase SH3_7 PF12914.7 gi|126178228|ref|YP_001046193.1| - 0.16 12.2 0.1 4.2 7.6 0.0 2.4 1 1 1 2 2 2 0 SH3 domain of SH3b2 type PmbA_TldD PF01523.16 gi|126178229|ref|YP_001046194.1| - 1.5e-51 175.9 0.3 1.8e-51 175.6 0.3 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase BofA PF07441.11 gi|126178230|ref|YP_001046195.1| - 3.4e-16 59.2 15.1 3.9e-16 59.0 15.1 1.0 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Pho88 PF10032.9 gi|126178230|ref|YP_001046195.1| - 0.15 11.3 0.3 0.18 11.0 0.3 1.2 1 0 0 1 1 1 0 Phosphate transport (Pho88) CPP1-like PF11833.8 gi|126178230|ref|YP_001046195.1| - 1.4 8.6 4.4 1.5 8.4 4.4 1.3 1 1 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like V-ATPase_G_2 PF16999.5 gi|126178232|ref|YP_001046197.1| - 1.9e-07 31.4 16.1 2.3e-07 31.2 16.1 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|126178232|ref|YP_001046197.1| - 0.01 15.9 19.8 0.016 15.3 15.2 2.0 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) DUF3552 PF12072.8 gi|126178232|ref|YP_001046197.1| - 0.03 13.8 13.3 0.023 14.1 11.8 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) DivIVA PF05103.13 gi|126178232|ref|YP_001046197.1| - 0.09 12.9 14.2 0.65 10.1 4.9 2.1 1 1 1 2 2 2 0 DivIVA protein BNIP3 PF06553.12 gi|126178232|ref|YP_001046197.1| - 0.11 12.1 0.4 0.13 12.0 0.4 1.1 1 0 0 1 1 1 0 BNIP3 Vps51 PF08700.11 gi|126178232|ref|YP_001046197.1| - 0.19 11.9 4.0 3.4 7.8 0.4 2.2 2 0 0 2 2 2 0 Vps51/Vps67 Spore_coat_CotO PF14153.6 gi|126178232|ref|YP_001046197.1| - 0.4 10.6 5.7 0.44 10.4 5.7 1.2 1 0 0 1 1 1 0 Spore coat protein CotO Vma12 PF11712.8 gi|126178232|ref|YP_001046197.1| - 0.88 9.6 3.2 1.4 9.0 3.2 1.5 1 1 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase V-ATPase_G PF03179.15 gi|126178232|ref|YP_001046197.1| - 0.98 10.0 14.4 2.4 8.7 14.4 1.7 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit RRF PF01765.19 gi|126178232|ref|YP_001046197.1| - 2.8 7.9 8.7 2.5 8.1 7.5 1.5 1 1 1 2 2 2 0 Ribosome recycling factor V_ATPase_I PF01496.19 gi|126178233|ref|YP_001046198.1| - 7.9e-32 110.1 0.6 4.6e-17 61.3 0.0 2.8 3 0 0 3 3 3 2 V-type ATPase 116kDa subunit family ATP-synt_C PF00137.21 gi|126178234|ref|YP_001046199.1| - 3.5e-15 56.1 11.0 3.5e-15 56.1 11.0 1.5 1 1 1 2 2 2 1 ATP synthase subunit C Calponin PF00402.18 gi|126178234|ref|YP_001046199.1| - 3.2 7.5 9.4 0.21 11.2 4.0 1.9 2 0 0 2 2 2 0 Calponin family repeat vATP-synt_E PF01991.18 gi|126178235|ref|YP_001046200.1| - 1.3e-16 60.6 4.1 2.1e-16 60.0 4.1 1.3 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit PBP_like PF12727.7 gi|126178235|ref|YP_001046200.1| - 0.041 13.0 0.1 0.065 12.3 0.1 1.3 1 0 0 1 1 1 0 PBP superfamily domain DUF2968 PF11180.8 gi|126178235|ref|YP_001046200.1| - 0.047 13.3 3.4 0.044 13.4 2.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2968) Ribosomal_S20p PF01649.18 gi|126178235|ref|YP_001046200.1| - 0.97 10.1 5.3 0.34 11.6 0.9 2.0 1 1 1 2 2 2 0 Ribosomal protein S20 vATP-synt_AC39 PF01992.16 gi|126178236|ref|YP_001046201.1| - 1.8e-75 254.6 0.2 2e-75 254.4 0.2 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF2764 PF10962.8 gi|126178236|ref|YP_001046201.1| - 0.098 12.1 0.0 0.23 10.9 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2764) ATP-synt_F PF01990.17 gi|126178237|ref|YP_001046202.1| - 1.2e-15 57.6 0.1 1.3e-15 57.5 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.25 gi|126178238|ref|YP_001046203.1| - 4.6e-96 320.6 0.0 7e-96 319.9 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|126178238|ref|YP_001046203.1| - 8.9e-43 145.0 0.2 1.7e-42 144.1 0.2 1.5 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|126178238|ref|YP_001046203.1| - 2.1e-11 44.1 2.2 6.9e-11 42.5 2.2 2.0 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.22 gi|126178238|ref|YP_001046203.1| - 0.0016 18.6 0.2 0.22 11.8 0.0 2.9 2 0 0 2 2 2 1 Peptidase family M23 Biotin_lipoyl_2 PF13533.6 gi|126178238|ref|YP_001046203.1| - 0.034 14.0 0.2 0.081 12.8 0.2 1.6 1 0 0 1 1 1 0 Biotin-lipoyl like AAA_22 PF13401.6 gi|126178238|ref|YP_001046203.1| - 0.041 14.2 0.0 0.082 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Biotin_lipoyl PF00364.22 gi|126178238|ref|YP_001046203.1| - 0.14 12.0 2.3 0.6 10.0 2.2 2.2 1 1 0 1 1 1 0 Biotin-requiring enzyme RnfC_N PF13375.6 gi|126178238|ref|YP_001046203.1| - 0.16 11.9 1.5 1 9.3 0.1 2.3 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain ATP-synt_ab PF00006.25 gi|126178239|ref|YP_001046204.1| - 7e-65 218.7 0.0 9.4e-65 218.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|126178239|ref|YP_001046204.1| - 1.1e-10 41.8 2.6 1.1e-10 41.8 2.6 1.9 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain DUF561 PF04481.12 gi|126178239|ref|YP_001046204.1| - 0.052 12.7 0.0 0.11 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF561) ATP-synt_D PF01813.17 gi|126178240|ref|YP_001046205.1| - 5.6e-56 189.5 8.1 6.3e-56 189.3 8.1 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF3150 PF11348.8 gi|126178240|ref|YP_001046205.1| - 0.0017 17.6 1.0 0.0023 17.2 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3150) RPW8 PF05659.11 gi|126178240|ref|YP_001046205.1| - 0.038 13.7 1.1 0.086 12.5 1.1 1.6 1 0 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 PGK PF00162.19 gi|126178241|ref|YP_001046206.1| - 4.1e-107 358.4 0.0 4.6e-107 358.2 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DUF89 PF01937.19 gi|126178242|ref|YP_001046207.1| - 2e-49 168.5 0.0 2.2e-49 168.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 Col_cuticle_N PF01484.17 gi|126178243|ref|YP_001046208.1| - 0.012 15.7 2.2 0.017 15.2 2.2 1.3 1 0 0 1 1 1 0 Nematode cuticle collagen N-terminal domain DUF4446 PF14584.6 gi|126178243|ref|YP_001046208.1| - 0.025 14.5 0.7 0.029 14.4 0.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) bZIP_1 PF00170.21 gi|126178243|ref|YP_001046208.1| - 0.029 14.5 0.1 0.037 14.1 0.1 1.1 1 0 0 1 1 1 0 bZIP transcription factor 7tm_1 PF00001.21 gi|126178243|ref|YP_001046208.1| - 0.064 12.6 0.3 0.056 12.8 0.3 1.0 1 0 0 1 1 1 0 7 transmembrane receptor (rhodopsin family) S1FA PF04689.13 gi|126178243|ref|YP_001046208.1| - 0.18 12.0 1.4 0.25 11.5 1.4 1.2 1 0 0 1 1 1 0 DNA binding protein S1FA CbiA PF01656.23 gi|126178244|ref|YP_001046209.1| - 4.2e-20 72.1 0.2 6e-20 71.6 0.2 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|126178244|ref|YP_001046209.1| - 1.2e-17 64.2 3.3 1.4e-16 60.7 3.3 2.3 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|126178244|ref|YP_001046209.1| - 4e-16 59.4 0.0 7.3e-16 58.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|126178244|ref|YP_001046209.1| - 2.4e-13 50.1 1.5 8.3e-13 48.4 1.5 1.6 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|126178244|ref|YP_001046209.1| - 3.7e-10 39.7 0.1 2.2e-09 37.1 0.0 2.0 2 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|126178244|ref|YP_001046209.1| - 1.2e-06 27.9 2.4 4.6e-06 26.0 0.6 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|126178244|ref|YP_001046209.1| - 1.5e-06 27.8 3.7 2.5e-05 23.7 2.1 2.7 1 1 0 2 2 2 1 ATPase MipZ CLP1_P PF16575.5 gi|126178244|ref|YP_001046209.1| - 1.9e-05 24.5 0.1 5e-05 23.2 0.1 1.7 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_26 PF13500.6 gi|126178244|ref|YP_001046209.1| - 0.0026 17.6 4.0 0.014 15.2 0.4 2.4 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|126178244|ref|YP_001046209.1| - 0.0044 16.6 0.3 0.022 14.4 0.3 2.0 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.11 gi|126178244|ref|YP_001046209.1| - 0.014 14.7 0.4 0.026 13.8 0.4 1.4 1 0 0 1 1 1 0 VirC1 protein AAA_24 PF13479.6 gi|126178244|ref|YP_001046209.1| - 0.026 14.3 0.2 0.046 13.4 0.2 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|126178244|ref|YP_001046209.1| - 0.027 14.2 0.9 0.046 13.4 0.9 1.4 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|126178244|ref|YP_001046209.1| - 0.039 13.9 0.1 0.085 12.8 0.1 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase SRP54 PF00448.22 gi|126178244|ref|YP_001046209.1| - 0.044 13.4 1.3 0.11 12.1 1.3 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Robl_LC7 PF03259.17 gi|126178245|ref|YP_001046210.1| - 1.1e-08 34.7 0.4 1.3e-08 34.4 0.4 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain LAMTOR5 PF16672.5 gi|126178245|ref|YP_001046210.1| - 0.069 13.1 0.3 0.11 12.5 0.2 1.4 1 1 0 1 1 1 0 Ragulator complex protein LAMTOR5 MetOD2 PF18548.1 gi|126178246|ref|YP_001046211.1| - 9.2e-27 93.0 3.2 1.3e-26 92.5 3.2 1.2 1 0 0 1 1 1 1 Metanogen output domain 2 Response_reg PF00072.24 gi|126178246|ref|YP_001046211.1| - 3.2e-21 75.6 0.0 8.7e-21 74.2 0.0 1.7 2 0 0 2 2 2 1 Response regulator receiver domain Ribonuc_red_lgN PF00317.21 gi|126178246|ref|YP_001046211.1| - 0.032 14.3 0.6 0.3 11.1 0.1 2.2 2 0 0 2 2 2 0 Ribonucleotide reductase, all-alpha domain PsiE PF06146.12 gi|126178247|ref|YP_001046212.1| - 1e-12 48.2 6.4 1e-12 48.2 6.4 1.9 2 0 0 2 2 2 1 Phosphate-starvation-inducible E MerC PF03203.14 gi|126178247|ref|YP_001046212.1| - 0.35 11.3 9.7 0.5 10.8 7.7 1.9 1 1 1 2 2 2 0 MerC mercury resistance protein DUF3975 PF13126.6 gi|126178247|ref|YP_001046212.1| - 0.56 10.7 10.3 0.03 14.7 5.1 1.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3975) DUF4234 PF14018.6 gi|126178247|ref|YP_001046212.1| - 0.65 10.2 7.2 58 3.9 7.2 2.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4234) Gram_pos_anchor PF00746.21 gi|126178247|ref|YP_001046212.1| - 2 8.4 0.0 2 8.4 0.0 2.6 3 0 0 3 3 3 0 LPXTG cell wall anchor motif RNA_pol_Rpb5_C PF01191.19 gi|126178248|ref|YP_001046213.1| - 1.9e-29 101.4 0.0 2.1e-29 101.2 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.15 gi|126178249|ref|YP_001046214.1| - 6.2e-51 172.8 0.0 7.8e-51 172.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.16 gi|126178249|ref|YP_001046214.1| - 2.4e-26 91.7 0.0 4.8e-26 90.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|126178249|ref|YP_001046214.1| - 2.1e-17 63.4 0.6 1.6e-16 60.5 0.6 2.1 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_6 PF00562.28 gi|126178250|ref|YP_001046215.1| - 3.1e-128 428.1 0.0 3.9e-128 427.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|126178250|ref|YP_001046215.1| - 8.1e-31 106.3 0.2 1.4e-30 105.5 0.2 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|126178250|ref|YP_001046215.1| - 9.5e-22 77.1 0.9 1.8e-21 76.1 0.9 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|126178250|ref|YP_001046215.1| - 1.3e-07 32.1 3.5 4.2e-07 30.4 3.5 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 Auto_anti-p27 PF06677.12 gi|126178250|ref|YP_001046215.1| - 0.078 13.2 2.2 0.14 12.3 2.2 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Vps36-NZF-N PF16988.5 gi|126178250|ref|YP_001046215.1| - 0.2 11.1 0.1 0.42 10.0 0.1 1.5 1 0 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain RNA_pol_Rpb1_1 PF04997.12 gi|126178251|ref|YP_001046216.1| - 5.8e-100 334.6 0.7 6.5e-100 334.5 0.0 1.4 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|126178251|ref|YP_001046216.1| - 8.3e-65 218.1 0.0 1.3e-64 217.4 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.17 gi|126178251|ref|YP_001046216.1| - 1.8e-32 111.5 0.0 3.3e-32 110.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.18 gi|126178251|ref|YP_001046216.1| - 8.7e-32 110.2 0.0 1.9e-31 109.1 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|126178251|ref|YP_001046216.1| - 3.9e-28 98.6 0.1 7.1e-28 97.8 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_5 PF04998.17 gi|126178252|ref|YP_001046217.1| - 2e-54 184.8 0.2 2.5e-54 184.5 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Ribosomal_L7Ae PF01248.26 gi|126178253|ref|YP_001046218.1| - 7.6e-16 57.6 0.0 9e-16 57.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BRCT_3 PF18428.1 gi|126178253|ref|YP_001046218.1| - 0.082 13.0 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain KH_2 PF07650.17 gi|126178254|ref|YP_001046219.1| - 9e-18 63.9 0.1 3.2e-12 46.1 0.1 2.1 2 0 0 2 2 2 2 KH domain KH_5 PF13184.6 gi|126178254|ref|YP_001046219.1| - 7.3e-13 48.4 0.1 3.1e-12 46.4 0.0 1.9 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|126178254|ref|YP_001046219.1| - 4e-06 26.6 0.1 0.057 13.3 0.0 2.3 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|126178254|ref|YP_001046219.1| - 0.0012 18.6 0.1 0.12 12.2 0.0 2.5 2 0 0 2 2 2 2 KH domain Mucin PF01456.17 gi|126178255|ref|YP_001046220.1| - 0.36 10.8 13.7 0.85 9.6 13.7 1.6 1 1 0 1 1 1 0 Mucin-like glycoprotein DUF1786 PF08735.10 gi|126178256|ref|YP_001046221.1| - 3.1e-86 288.8 0.0 3.7e-86 288.5 0.0 1.1 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) NRDD PF13597.6 gi|126178257|ref|YP_001046222.1| - 5e-131 438.2 0.0 6.1e-131 438.0 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Robl_LC7 PF03259.17 gi|126178258|ref|YP_001046223.1| - 9.7e-09 34.9 0.4 1.1e-08 34.7 0.4 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain LAMTOR5 PF16672.5 gi|126178258|ref|YP_001046223.1| - 0.058 13.3 0.2 0.091 12.7 0.2 1.4 1 1 0 1 1 1 0 Ragulator complex protein LAMTOR5 MetOD2 PF18548.1 gi|126178259|ref|YP_001046224.1| - 9.2e-27 93.0 3.2 1.3e-26 92.5 3.2 1.2 1 0 0 1 1 1 1 Metanogen output domain 2 Response_reg PF00072.24 gi|126178259|ref|YP_001046224.1| - 3.2e-21 75.6 0.0 8.7e-21 74.2 0.0 1.7 2 0 0 2 2 2 1 Response regulator receiver domain Ribonuc_red_lgN PF00317.21 gi|126178259|ref|YP_001046224.1| - 0.032 14.3 0.6 0.3 11.1 0.1 2.2 2 0 0 2 2 2 0 Ribonucleotide reductase, all-alpha domain PsiE PF06146.12 gi|126178260|ref|YP_001046225.1| - 1e-12 48.2 6.4 1e-12 48.2 6.4 1.9 2 0 0 2 2 2 1 Phosphate-starvation-inducible E MerC PF03203.14 gi|126178260|ref|YP_001046225.1| - 0.35 11.3 9.7 0.5 10.8 7.7 1.9 1 1 1 2 2 2 0 MerC mercury resistance protein DUF3975 PF13126.6 gi|126178260|ref|YP_001046225.1| - 0.56 10.7 10.3 0.03 14.7 5.1 1.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3975) DUF4234 PF14018.6 gi|126178260|ref|YP_001046225.1| - 0.65 10.2 7.2 58 3.9 7.2 2.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4234) Gram_pos_anchor PF00746.21 gi|126178260|ref|YP_001046225.1| - 2 8.4 0.0 2 8.4 0.0 2.6 3 0 0 3 3 3 0 LPXTG cell wall anchor motif RNA_pol_Rpb5_C PF01191.19 gi|126178261|ref|YP_001046226.1| - 1.9e-29 101.4 0.0 2.1e-29 101.2 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.15 gi|126178262|ref|YP_001046227.1| - 6.2e-51 172.8 0.0 7.8e-51 172.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.16 gi|126178262|ref|YP_001046227.1| - 2.4e-26 91.7 0.0 4.8e-26 90.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|126178262|ref|YP_001046227.1| - 2.1e-17 63.4 0.6 1.6e-16 60.5 0.6 2.1 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_6 PF00562.28 gi|126178263|ref|YP_001046228.1| - 3.1e-128 428.1 0.0 3.9e-128 427.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|126178263|ref|YP_001046228.1| - 8.1e-31 106.3 0.2 1.4e-30 105.5 0.2 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|126178263|ref|YP_001046228.1| - 9.5e-22 77.1 0.9 1.8e-21 76.1 0.9 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|126178263|ref|YP_001046228.1| - 1.3e-07 32.1 3.5 4.2e-07 30.4 3.5 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 Auto_anti-p27 PF06677.12 gi|126178263|ref|YP_001046228.1| - 0.078 13.2 2.2 0.14 12.3 2.2 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Vps36-NZF-N PF16988.5 gi|126178263|ref|YP_001046228.1| - 0.2 11.1 0.1 0.42 10.0 0.1 1.5 1 0 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain RNA_pol_Rpb1_1 PF04997.12 gi|126178264|ref|YP_001046229.1| - 5.8e-100 334.6 0.7 6.5e-100 334.5 0.0 1.4 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|126178264|ref|YP_001046229.1| - 8.3e-65 218.1 0.0 1.3e-64 217.4 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.17 gi|126178264|ref|YP_001046229.1| - 1.8e-32 111.5 0.0 3.3e-32 110.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.18 gi|126178264|ref|YP_001046229.1| - 8.7e-32 110.2 0.0 1.9e-31 109.1 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|126178264|ref|YP_001046229.1| - 3.9e-28 98.6 0.1 7.1e-28 97.8 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_5 PF04998.17 gi|126178265|ref|YP_001046230.1| - 2e-54 184.8 0.2 2.5e-54 184.5 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Ribosomal_L7Ae PF01248.26 gi|126178266|ref|YP_001046231.1| - 7.6e-16 57.6 0.0 9e-16 57.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BRCT_3 PF18428.1 gi|126178266|ref|YP_001046231.1| - 0.082 13.0 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain KH_2 PF07650.17 gi|126178267|ref|YP_001046232.1| - 9e-18 63.9 0.1 3.2e-12 46.1 0.1 2.1 2 0 0 2 2 2 2 KH domain KH_5 PF13184.6 gi|126178267|ref|YP_001046232.1| - 7.3e-13 48.4 0.1 3.1e-12 46.4 0.0 1.9 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|126178267|ref|YP_001046232.1| - 4e-06 26.6 0.1 0.057 13.3 0.0 2.3 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|126178267|ref|YP_001046232.1| - 0.0012 18.6 0.1 0.12 12.2 0.0 2.5 2 0 0 2 2 2 2 KH domain Mucin PF01456.17 gi|126178268|ref|YP_001046233.1| - 0.36 10.8 13.7 0.85 9.6 13.7 1.6 1 1 0 1 1 1 0 Mucin-like glycoprotein DUF1786 PF08735.10 gi|126178269|ref|YP_001046234.1| - 3.1e-86 288.8 0.0 3.7e-86 288.5 0.0 1.1 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) NRDD PF13597.6 gi|126178270|ref|YP_001046235.1| - 7.1e-131 437.7 0.0 8.8e-131 437.4 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase LigT_PEase PF02834.16 gi|126178272|ref|YP_001046237.1| - 5.3e-27 93.8 0.3 1.8e-14 53.7 0.1 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|126178272|ref|YP_001046237.1| - 1e-06 28.7 0.0 1.2e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily tRNA_NucTransf2 PF09249.11 gi|126178273|ref|YP_001046238.1| - 2.2e-43 147.1 0.0 3.5e-43 146.5 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|126178273|ref|YP_001046238.1| - 5.4e-11 42.6 0.0 1.1e-10 41.6 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|126178273|ref|YP_001046238.1| - 0.00073 19.7 0.0 0.0012 19.0 0.0 1.3 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain HATPase_c PF02518.26 gi|126178274|ref|YP_001046239.1| - 7.3e-21 74.8 0.1 1.4e-20 73.8 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|126178274|ref|YP_001046239.1| - 2.6e-18 66.1 0.1 8e-18 64.5 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|126178274|ref|YP_001046239.1| - 6.5e-17 61.7 0.0 1.6e-16 60.4 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|126178274|ref|YP_001046239.1| - 4.6e-15 55.8 0.2 8.9e-15 54.9 0.2 1.5 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|126178274|ref|YP_001046239.1| - 8.2e-13 48.5 1.3 9e-12 45.1 0.0 3.2 4 1 1 5 5 5 1 PAS fold PAS_8 PF13188.7 gi|126178274|ref|YP_001046239.1| - 1.1e-07 31.7 0.0 2.8e-07 30.4 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_10 PF13596.6 gi|126178274|ref|YP_001046239.1| - 1.1e-05 26.0 0.0 4.2e-05 24.1 0.0 2.0 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|126178274|ref|YP_001046239.1| - 0.00017 21.6 0.0 0.00034 20.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|126178274|ref|YP_001046239.1| - 0.00042 20.2 0.0 0.0011 18.9 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS_7 PF12860.7 gi|126178274|ref|YP_001046239.1| - 0.0083 16.3 0.5 0.067 13.4 0.5 2.3 1 1 0 1 1 1 1 PAS fold Trehalase_Ca-bi PF07492.11 gi|126178274|ref|YP_001046239.1| - 0.12 12.1 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 Neutral trehalase Ca2+ binding domain Pex24p PF06398.11 gi|126178274|ref|YP_001046239.1| - 0.27 10.2 0.8 0.46 9.4 0.8 1.3 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin ABC2_membrane PF01061.24 gi|126178277|ref|YP_001046242.1| - 1.2e-39 136.0 18.8 1.2e-39 136.0 18.8 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|126178277|ref|YP_001046242.1| - 1.1e-15 57.6 21.8 1.1e-15 57.6 21.8 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|126178277|ref|YP_001046242.1| - 9.1e-05 21.9 17.9 0.00026 20.4 17.9 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|126178278|ref|YP_001046243.1| - 1.2e-34 119.7 0.0 1.9e-34 119.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter DUF4162 PF13732.6 gi|126178278|ref|YP_001046243.1| - 5.6e-12 46.2 0.0 1.2e-11 45.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_21 PF13304.6 gi|126178278|ref|YP_001046243.1| - 1.1e-11 45.1 1.3 1.7e-07 31.4 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|126178278|ref|YP_001046243.1| - 3e-05 23.9 0.0 0.059 13.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|126178278|ref|YP_001046243.1| - 0.00013 22.6 0.0 0.00026 21.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|126178278|ref|YP_001046243.1| - 0.00013 22.3 0.0 0.0012 19.2 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|126178278|ref|YP_001046243.1| - 0.0071 16.6 0.4 0.035 14.4 0.4 2.0 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|126178278|ref|YP_001046243.1| - 0.032 13.9 0.3 0.061 12.9 0.3 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SMC_N PF02463.19 gi|126178278|ref|YP_001046243.1| - 0.048 13.1 0.0 0.59 9.5 0.0 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|126178278|ref|YP_001046243.1| - 0.078 13.0 0.1 0.71 9.9 0.1 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|126178278|ref|YP_001046243.1| - 0.1 12.5 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|126178278|ref|YP_001046243.1| - 0.18 11.5 0.7 0.36 10.6 0.7 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|126178278|ref|YP_001046243.1| - 0.2 11.3 0.5 1.4 8.6 0.1 2.1 2 0 0 2 2 2 0 AAA domain MazE_antitoxin PF04014.18 gi|126178279|ref|YP_001046244.1| - 5.6e-08 32.5 0.4 7.2e-08 32.2 0.4 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin AbrB-like PF14250.6 gi|126178279|ref|YP_001046244.1| - 0.031 14.4 0.0 0.042 13.9 0.0 1.2 1 0 0 1 1 1 0 AbrB-like transcriptional regulator Methyltransf_11 PF08241.12 gi|126178280|ref|YP_001046245.1| - 6.7e-16 58.7 0.0 9.8e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126178280|ref|YP_001046245.1| - 2.2e-13 50.7 0.0 3.2e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126178280|ref|YP_001046245.1| - 1.4e-12 47.6 0.0 1.8e-12 47.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|126178280|ref|YP_001046245.1| - 1.4e-11 44.6 0.0 1.9e-11 44.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126178280|ref|YP_001046245.1| - 7.2e-08 33.1 0.0 1e-07 32.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|126178280|ref|YP_001046245.1| - 3.4e-07 29.8 0.0 4.1e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family FtsJ PF01728.19 gi|126178280|ref|YP_001046245.1| - 1.3e-05 25.3 0.0 2e-05 24.8 0.0 1.3 1 1 0 1 1 1 1 FtsJ-like methyltransferase Fibrillarin PF01269.17 gi|126178280|ref|YP_001046245.1| - 1.5e-05 24.3 0.0 1.8e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin CMAS PF02353.20 gi|126178280|ref|YP_001046245.1| - 1.5e-05 24.5 0.0 2e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|126178280|ref|YP_001046245.1| - 6.9e-05 22.4 0.0 8.6e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|126178280|ref|YP_001046245.1| - 0.0016 18.2 0.0 0.002 17.9 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_24 PF13578.6 gi|126178280|ref|YP_001046245.1| - 0.0017 19.4 0.0 0.0024 18.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|126178280|ref|YP_001046245.1| - 0.0033 17.1 0.0 0.0098 15.5 0.0 1.7 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F GCD14 PF08704.10 gi|126178280|ref|YP_001046245.1| - 0.0034 17.1 0.0 0.0068 16.1 0.0 1.4 2 0 0 2 2 2 1 tRNA methyltransferase complex GCD14 subunit MTS PF05175.14 gi|126178280|ref|YP_001046245.1| - 0.039 13.5 0.0 0.053 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_9 PF08003.11 gi|126178280|ref|YP_001046245.1| - 0.073 12.0 0.0 0.093 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_18 PF12847.7 gi|126178280|ref|YP_001046245.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain FrhB_FdhB_C PF04432.13 gi|126178281|ref|YP_001046246.1| - 9.6e-35 119.7 0.0 1.5e-34 119.1 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|126178281|ref|YP_001046246.1| - 1.5e-21 76.3 0.1 3.6e-21 75.1 0.1 1.7 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.27 gi|126178281|ref|YP_001046246.1| - 6.6e-09 35.2 2.6 6.6e-09 35.2 2.6 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|126178281|ref|YP_001046246.1| - 3.6e-07 30.0 2.3 3.6e-07 30.0 2.3 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126178281|ref|YP_001046246.1| - 4e-07 30.1 9.9 4e-07 30.1 9.9 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126178281|ref|YP_001046246.1| - 2.9e-06 27.8 10.2 2.9e-06 27.8 10.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126178281|ref|YP_001046246.1| - 3.1e-06 27.2 19.6 9.8e-05 22.4 10.0 2.1 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126178281|ref|YP_001046246.1| - 1.8e-05 24.9 13.3 0.0011 19.3 1.7 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|126178281|ref|YP_001046246.1| - 2.8e-05 24.5 1.6 0.05 14.1 0.8 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126178281|ref|YP_001046246.1| - 3.5e-05 23.6 3.1 3.5e-05 23.6 3.1 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|126178281|ref|YP_001046246.1| - 0.00018 22.0 2.8 0.023 15.2 0.6 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126178281|ref|YP_001046246.1| - 0.00022 22.1 11.1 0.0012 19.8 1.8 3.1 2 1 2 4 4 4 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|126178281|ref|YP_001046246.1| - 0.00042 20.4 9.7 0.0022 18.1 0.4 3.3 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126178281|ref|YP_001046246.1| - 0.0066 17.3 16.7 0.097 13.6 7.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|126178281|ref|YP_001046246.1| - 0.028 15.2 4.8 0.18 12.5 1.1 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|126178281|ref|YP_001046246.1| - 0.087 13.7 0.4 0.087 13.7 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|126178281|ref|YP_001046246.1| - 0.41 11.2 11.8 1 10.0 3.5 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|126178281|ref|YP_001046246.1| - 7.4 6.8 9.0 5.5 7.2 2.5 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain GXGXG PF01493.19 gi|126178282|ref|YP_001046247.1| - 4.7e-37 127.4 8.4 5.9e-37 127.1 8.4 1.1 1 0 0 1 1 1 1 GXGXG motif Glu_synthase PF01645.17 gi|126178283|ref|YP_001046248.1| - 5.4e-131 437.1 0.0 8.3e-131 436.5 0.0 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|126178283|ref|YP_001046248.1| - 8.3e-14 51.7 0.0 1.2e-08 34.7 0.0 2.3 2 0 0 2 2 2 2 Glutamate synthase central domain Fer4_10 PF13237.6 gi|126178283|ref|YP_001046248.1| - 1.2e-09 38.1 12.9 1.1e-06 28.7 8.8 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain IMPDH PF00478.25 gi|126178283|ref|YP_001046248.1| - 2.1e-09 36.8 5.7 2.5e-07 30.0 3.7 3.1 3 1 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|126178283|ref|YP_001046248.1| - 3.6e-09 36.1 6.4 5e-06 25.8 2.3 3.1 3 0 0 3 3 3 2 FMN-dependent dehydrogenase Fer4_7 PF12838.7 gi|126178283|ref|YP_001046248.1| - 2.7e-08 34.3 18.4 7.2e-07 29.7 10.8 2.8 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126178283|ref|YP_001046248.1| - 6.4e-08 32.6 16.7 1.4e-07 31.6 9.8 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|126178283|ref|YP_001046248.1| - 2.9e-07 30.0 19.5 0.00028 20.6 0.8 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126178283|ref|YP_001046248.1| - 4.5e-07 29.9 6.9 4.5e-07 29.9 6.9 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126178283|ref|YP_001046248.1| - 2.3e-06 28.4 11.1 0.005 17.7 1.1 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|126178283|ref|YP_001046248.1| - 6.8e-06 25.9 22.9 0.0028 17.7 1.9 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|126178283|ref|YP_001046248.1| - 1.6e-05 25.4 11.3 0.088 13.4 1.0 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126178283|ref|YP_001046248.1| - 4.6e-05 23.3 21.1 0.00023 21.1 1.7 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain NMO PF03060.15 gi|126178283|ref|YP_001046248.1| - 6e-05 22.6 1.9 0.00013 21.5 1.9 1.5 1 0 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.21 gi|126178283|ref|YP_001046248.1| - 0.034 13.4 2.7 0.34 10.1 2.7 2.2 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase Fer4_15 PF13459.6 gi|126178283|ref|YP_001046248.1| - 0.068 13.9 1.7 0.068 13.9 1.7 3.2 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|126178283|ref|YP_001046248.1| - 0.09 13.2 21.0 0.82 10.2 3.8 3.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain G3P_antiterm PF04309.12 gi|126178283|ref|YP_001046248.1| - 0.15 11.4 0.5 0.53 9.7 0.1 1.9 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Fer4_22 PF17179.4 gi|126178283|ref|YP_001046248.1| - 0.57 11.1 14.9 0.72 10.7 1.5 3.2 3 0 0 3 3 3 0 4Fe-4S dicluster domain GATase_6 PF13522.6 gi|126178284|ref|YP_001046249.1| - 3.3e-10 40.3 0.0 3.1e-09 37.1 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.21 gi|126178284|ref|YP_001046249.1| - 3.8e-07 29.2 0.1 4.8e-05 22.2 0.1 2.1 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_7 PF13537.6 gi|126178284|ref|YP_001046249.1| - 0.00014 21.8 0.0 0.12 12.3 0.0 2.2 2 0 0 2 2 2 2 Glutamine amidotransferase domain Gln-synt_C PF00120.24 gi|126178285|ref|YP_001046250.1| - 2.6e-130 434.4 0.0 3.1e-130 434.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|126178285|ref|YP_001046250.1| - 1.1e-30 105.1 0.0 2.3e-30 104.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Bmp PF02608.14 gi|126178285|ref|YP_001046250.1| - 0.0044 16.0 0.0 0.0069 15.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Gln-synt_N_2 PF16952.5 gi|126178285|ref|YP_001046250.1| - 0.046 13.6 0.0 0.086 12.7 0.0 1.5 1 0 0 1 1 1 0 Glutamine synthetase N-terminal domain ParA PF10609.9 gi|126178287|ref|YP_001046252.1| - 1.7e-101 338.8 0.0 2e-101 338.6 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|126178287|ref|YP_001046252.1| - 9.6e-17 61.2 0.0 3.1e-16 59.6 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|126178287|ref|YP_001046252.1| - 1.2e-09 38.4 0.1 1.4e-08 34.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|126178287|ref|YP_001046252.1| - 2.9e-07 30.0 0.8 2.3e-06 27.0 0.1 2.4 2 1 1 3 3 3 1 Anion-transporting ATPase MipZ PF09140.11 gi|126178287|ref|YP_001046252.1| - 1.2e-06 28.0 0.0 2e-06 27.3 0.0 1.4 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|126178287|ref|YP_001046252.1| - 7.2e-05 22.4 0.0 0.0039 16.7 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|126178287|ref|YP_001046252.1| - 0.0022 17.9 1.0 1.3 8.8 0.1 2.8 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|126178287|ref|YP_001046252.1| - 0.0024 17.5 0.1 0.0044 16.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain CLP1_P PF16575.5 gi|126178287|ref|YP_001046252.1| - 0.0044 16.8 0.0 0.011 15.5 0.0 1.6 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CBP_BcsQ PF06564.12 gi|126178287|ref|YP_001046252.1| - 0.011 15.2 0.2 0.08 12.4 0.1 1.9 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ APS_kinase PF01583.20 gi|126178287|ref|YP_001046252.1| - 0.012 15.5 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase SRP54 PF00448.22 gi|126178287|ref|YP_001046252.1| - 0.017 14.8 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|126178287|ref|YP_001046252.1| - 0.04 12.9 0.0 0.059 12.4 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NB-ARC PF00931.22 gi|126178287|ref|YP_001046252.1| - 0.083 12.1 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_29 PF13555.6 gi|126178287|ref|YP_001046252.1| - 0.13 12.0 0.1 0.79 9.5 0.1 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|126178287|ref|YP_001046252.1| - 0.14 12.7 0.0 0.24 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|126178287|ref|YP_001046252.1| - 0.14 12.1 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|126178287|ref|YP_001046252.1| - 0.15 12.2 0.0 0.94 9.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|126178287|ref|YP_001046252.1| - 0.17 11.7 0.1 0.32 10.9 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase NTPase_1 PF03266.15 gi|126178287|ref|YP_001046252.1| - 0.2 11.6 0.1 0.44 10.4 0.1 1.5 1 0 0 1 1 1 0 NTPase Torsin PF06309.11 gi|126178287|ref|YP_001046252.1| - 0.2 11.7 0.0 0.35 11.0 0.0 1.3 1 0 0 1 1 1 0 Torsin FeoB_associated PF12669.7 gi|126178287|ref|YP_001046252.1| - 0.97 9.9 4.9 2.5 8.6 4.9 1.7 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein ThiS PF02597.20 gi|126178288|ref|YP_001046253.1| - 3.7e-17 62.7 0.0 4.2e-17 62.6 0.0 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|126178288|ref|YP_001046253.1| - 0.014 15.7 0.0 0.016 15.6 0.0 1.1 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) TGS PF02824.21 gi|126178288|ref|YP_001046253.1| - 0.18 11.8 0.0 6.5 6.9 0.0 2.2 2 0 0 2 2 2 0 TGS domain AFOR_C PF01314.18 gi|126178289|ref|YP_001046254.1| - 8.8e-140 466.0 0.0 1.1e-139 465.8 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|126178289|ref|YP_001046254.1| - 9.6e-78 260.6 1.0 2.7e-77 259.2 0.4 2.0 3 0 0 3 3 3 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain TrmO PF01980.16 gi|126178290|ref|YP_001046255.1| - 2.1e-34 118.3 0.0 2.8e-34 117.9 0.0 1.2 1 0 0 1 1 1 1 tRNA-methyltransferase O RVT_3 PF13456.6 gi|126178291|ref|YP_001046256.1| - 1.8e-20 73.0 0.0 2.1e-20 72.8 0.0 1.0 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|126178291|ref|YP_001046256.1| - 2.2e-13 50.6 0.0 2.4e-13 50.5 0.0 1.1 1 0 0 1 1 1 1 RNase H Pribosyltran PF00156.27 gi|126178292|ref|YP_001046257.1| - 1.5e-17 63.6 0.0 3.7e-17 62.3 0.0 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|126178292|ref|YP_001046257.1| - 0.0068 15.9 0.0 0.018 14.5 0.0 1.7 1 1 1 2 2 2 1 Phosphoribosyl transferase UPRTase PF14681.6 gi|126178292|ref|YP_001046257.1| - 0.025 14.0 0.0 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase CedA PF10729.9 gi|126178292|ref|YP_001046257.1| - 0.099 12.5 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Cell division activator CedA PBP PF01161.20 gi|126178293|ref|YP_001046258.1| - 6.7e-18 65.3 0.0 8e-18 65.0 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein PBP PF01161.20 gi|126178294|ref|YP_001046259.1| - 5.1e-16 59.2 0.0 6.6e-16 58.8 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein CBS PF00571.28 gi|126178295|ref|YP_001046260.1| - 1.2e-27 96.2 4.3 9.8e-15 54.8 0.5 2.1 2 0 0 2 2 2 2 CBS domain DUF475 PF04332.15 gi|126178296|ref|YP_001046261.1| - 4.1e-49 168.0 10.5 4.9e-49 167.7 10.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF475) TerC PF03741.16 gi|126178296|ref|YP_001046261.1| - 8e-18 64.8 10.8 1.3e-08 34.7 5.7 2.1 1 1 1 2 2 2 2 Integral membrane protein TerC family DUF4271 PF14093.6 gi|126178296|ref|YP_001046261.1| - 4.5 7.1 14.0 1.6 8.6 4.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4271) Halogen_Hydrol PF10112.9 gi|126178296|ref|YP_001046261.1| - 5.3 7.0 9.2 8 6.4 0.2 2.8 3 0 0 3 3 3 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Flavin_Reduct PF01613.18 gi|126178297|ref|YP_001046262.1| - 1.2e-25 90.4 0.0 1.5e-25 90.1 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain Hom_end_hint PF05203.16 gi|126178297|ref|YP_001046262.1| - 0.18 11.7 0.1 0.93 9.4 0.0 1.9 2 0 0 2 2 2 0 Hom_end-associated Hint zf-CCHC_5 PF14787.6 gi|126178298|ref|YP_001046263.1| - 0.042 13.6 2.6 0.068 12.9 2.6 1.4 1 0 0 1 1 1 0 GAG-polyprotein viral zinc-finger Gly-zipper_YMGG PF13441.6 gi|126178299|ref|YP_001046264.1| - 0.00078 19.1 18.4 0.0013 18.4 18.4 1.4 1 0 0 1 1 1 1 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 gi|126178299|ref|YP_001046264.1| - 0.0039 17.2 21.7 0.0068 16.4 21.7 1.3 1 0 0 1 1 1 1 Glycine zipper DUF4244 PF14029.6 gi|126178299|ref|YP_001046264.1| - 0.023 14.1 0.9 4.3 6.8 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4244) CPSF73-100_C PF11718.8 gi|126178299|ref|YP_001046264.1| - 0.11 12.0 0.4 0.82 9.2 0.2 1.9 2 0 0 2 2 2 0 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term Rick_17kDa_Anti PF05433.15 gi|126178299|ref|YP_001046264.1| - 0.19 11.6 24.2 0.42 10.5 24.2 1.6 1 0 0 1 1 1 0 Glycine zipper 2TM domain FUSC PF04632.12 gi|126178299|ref|YP_001046264.1| - 0.32 9.5 6.7 0.42 9.1 6.7 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family TraT PF05818.12 gi|126178299|ref|YP_001046264.1| - 0.34 10.6 4.8 0.7 9.5 4.8 1.5 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Syntaxin-6_N PF09177.11 gi|126178299|ref|YP_001046264.1| - 0.43 11.2 4.3 1.1 9.9 4.2 1.7 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Aminopep PF10023.9 gi|126178299|ref|YP_001046264.1| - 0.61 9.4 5.3 0.88 8.9 5.3 1.2 1 0 0 1 1 1 0 Putative aminopeptidase Spc7 PF08317.11 gi|126178299|ref|YP_001046264.1| - 0.89 8.4 7.2 1.2 7.9 7.2 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Tim17 PF02466.19 gi|126178299|ref|YP_001046264.1| - 2.3 8.6 6.3 4.4 7.7 0.9 2.3 1 1 1 2 2 2 0 Tim17/Tim22/Tim23/Pmp24 family Glyco_trans_1_2 PF13524.6 gi|126178299|ref|YP_001046264.1| - 5.8 7.4 7.0 17 5.9 0.7 2.5 1 1 1 2 2 2 0 Glycosyl transferases group 1 Radical_SAM PF04055.21 gi|126178300|ref|YP_001046265.1| - 8.3e-08 32.8 0.4 1.4e-07 32.0 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|126178300|ref|YP_001046265.1| - 3.5e-07 30.6 0.0 6e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|126178300|ref|YP_001046265.1| - 0.15 12.2 0.2 0.48 10.6 0.2 1.8 1 1 0 1 1 1 0 4Fe-4S single cluster domain Cupin_2 PF07883.11 gi|126178301|ref|YP_001046266.1| - 9.4e-11 41.3 0.1 1.7e-10 40.5 0.0 1.5 2 0 0 2 2 2 1 Cupin domain AraC_binding PF02311.19 gi|126178301|ref|YP_001046266.1| - 2.8e-07 30.5 0.0 3.6e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain EutQ PF06249.12 gi|126178301|ref|YP_001046266.1| - 0.0064 16.3 0.0 0.007 16.1 0.0 1.3 1 1 0 1 1 1 1 Ethanolamine utilisation protein EutQ Pilus_CpaD PF09476.10 gi|126178301|ref|YP_001046266.1| - 0.013 15.3 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) ARD PF03079.14 gi|126178301|ref|YP_001046266.1| - 0.027 14.7 0.0 0.033 14.4 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family Asp_Arg_Hydrox PF05118.15 gi|126178301|ref|YP_001046266.1| - 0.091 12.6 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Aspartyl/Asparaginyl beta-hydroxylase Cupin_3 PF05899.12 gi|126178301|ref|YP_001046266.1| - 0.095 12.4 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) AraC_binding_2 PF14525.6 gi|126178301|ref|YP_001046266.1| - 0.11 12.2 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain E1-E2_ATPase PF00122.20 gi|126178302|ref|YP_001046267.1| - 8.3e-52 175.3 2.8 8.3e-52 175.3 2.8 3.1 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|126178302|ref|YP_001046267.1| - 4.2e-41 140.7 5.2 4.2e-41 140.7 5.2 2.2 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Cation_ATPase_N PF00690.26 gi|126178302|ref|YP_001046267.1| - 2.7e-20 71.8 0.0 6.4e-20 70.6 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase PF00702.26 gi|126178302|ref|YP_001046267.1| - 3.9e-18 66.5 2.8 2.7e-17 63.8 2.3 2.6 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|126178302|ref|YP_001046267.1| - 3.2e-16 59.2 0.0 5.9e-16 58.3 0.0 1.4 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|126178302|ref|YP_001046267.1| - 3.5e-08 33.5 0.0 1.1e-05 25.4 0.2 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|126178302|ref|YP_001046267.1| - 0.0029 18.0 0.1 0.011 16.2 0.1 2.0 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Beta_propel PF09826.9 gi|126178303|ref|YP_001046268.1| - 1.8e-159 531.9 0.0 2.1e-159 531.7 0.0 1.0 1 0 0 1 1 1 1 Beta propeller domain Na_Ca_ex PF01699.24 gi|126178304|ref|YP_001046269.1| - 3.8e-47 160.0 45.5 7.5e-24 84.4 18.8 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Nitroreductase PF00881.24 gi|126178305|ref|YP_001046270.1| - 5.8e-26 91.6 0.0 6.9e-26 91.3 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|126178305|ref|YP_001046270.1| - 0.23 11.0 0.0 0.32 10.5 0.0 1.3 1 0 0 1 1 1 0 Putative TM nitroreductase CxxCxxCC PF03692.15 gi|126178306|ref|YP_001046271.1| - 1.2e-08 35.5 2.3 2.6e-08 34.4 2.1 1.8 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain CitMHS PF03600.16 gi|126178307|ref|YP_001046272.1| - 1.3e-43 149.4 28.6 2.9e-43 148.2 28.6 1.6 1 1 0 1 1 1 1 Citrate transporter TrkA_C PF02080.21 gi|126178307|ref|YP_001046272.1| - 6.3e-13 48.4 0.0 7.3e-06 25.7 0.0 2.5 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.19 gi|126178307|ref|YP_001046272.1| - 5.2e-12 45.6 40.0 6.1e-11 42.0 13.4 3.1 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region Pyr_redox_2 PF07992.14 gi|126178308|ref|YP_001046273.1| - 7.9e-48 163.2 0.4 9.8e-48 162.9 0.4 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|126178308|ref|YP_001046273.1| - 5.7e-24 84.5 0.0 9.8e-24 83.7 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|126178308|ref|YP_001046273.1| - 1.3e-15 57.7 0.5 1.6e-11 44.6 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|126178308|ref|YP_001046273.1| - 3.7e-13 49.4 0.0 6.2e-08 32.2 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|126178308|ref|YP_001046273.1| - 1.8e-05 24.0 2.0 1.8e-05 24.0 2.0 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A 3HCDH_N PF02737.18 gi|126178308|ref|YP_001046273.1| - 5.5e-05 23.1 1.7 0.039 13.8 0.3 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|126178308|ref|YP_001046273.1| - 0.00088 18.6 0.5 0.2 10.9 0.1 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|126178308|ref|YP_001046273.1| - 0.00091 18.6 0.0 0.089 12.1 0.1 2.4 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|126178308|ref|YP_001046273.1| - 0.001 19.2 5.2 0.0037 17.5 0.3 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|126178308|ref|YP_001046273.1| - 0.0015 17.8 0.0 0.62 9.2 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|126178308|ref|YP_001046273.1| - 0.0015 17.7 1.5 0.002 17.3 0.3 1.8 2 0 0 2 2 2 1 FAD binding domain F420_oxidored PF03807.17 gi|126178308|ref|YP_001046273.1| - 0.0052 17.3 0.5 0.83 10.3 0.0 2.4 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.24 gi|126178308|ref|YP_001046273.1| - 0.0069 16.0 1.7 0.0069 16.0 1.7 2.7 2 1 0 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|126178308|ref|YP_001046273.1| - 0.012 14.3 0.6 0.091 11.4 0.1 2.3 2 1 1 3 3 3 0 HI0933-like protein PALP PF00291.25 gi|126178308|ref|YP_001046273.1| - 0.029 13.8 0.1 0.056 12.9 0.1 1.5 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Thi4 PF01946.17 gi|126178308|ref|YP_001046273.1| - 0.047 12.9 0.3 0.1 11.8 0.3 1.5 1 0 0 1 1 1 0 Thi4 family NAD_binding_2 PF03446.15 gi|126178308|ref|YP_001046273.1| - 0.05 13.8 0.0 0.22 11.7 0.0 2.0 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.6 gi|126178308|ref|YP_001046273.1| - 0.094 13.2 0.1 5.3 7.6 0.0 2.5 2 0 0 2 2 2 0 XdhC Rossmann domain Lycopene_cycl PF05834.12 gi|126178308|ref|YP_001046273.1| - 0.22 10.6 3.8 0.051 12.6 0.5 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|126178308|ref|YP_001046273.1| - 0.56 9.5 4.8 0.19 11.0 0.8 2.1 2 1 0 2 2 2 0 FAD dependent oxidoreductase GMC_oxred_C PF05199.13 gi|126178308|ref|YP_001046273.1| - 1 9.9 3.0 3.1 8.3 0.4 2.4 1 1 1 2 2 2 0 GMC oxidoreductase Fer4_7 PF12838.7 gi|126178309|ref|YP_001046274.1| - 2.3e-12 47.3 37.8 2.1e-08 34.6 13.5 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126178309|ref|YP_001046274.1| - 8.6e-11 41.8 23.0 2.3e-07 30.8 14.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|126178309|ref|YP_001046274.1| - 1.4e-10 40.5 14.2 3.9e-06 26.4 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|126178309|ref|YP_001046274.1| - 3.7e-08 33.0 12.2 0.00062 19.7 1.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|126178309|ref|YP_001046274.1| - 7.9e-08 33.1 9.7 0.0028 18.6 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|126178309|ref|YP_001046274.1| - 1.1e-07 31.6 16.2 0.00011 22.2 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126178309|ref|YP_001046274.1| - 1.7e-07 31.3 12.5 2.9e-07 30.5 12.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126178309|ref|YP_001046274.1| - 1.7e-06 28.0 10.0 3.1e-06 27.2 10.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126178309|ref|YP_001046274.1| - 7e-05 23.2 7.7 0.003 18.0 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|126178309|ref|YP_001046274.1| - 0.00011 22.9 8.0 0.082 13.7 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|126178309|ref|YP_001046274.1| - 0.0022 18.5 13.9 0.075 13.6 1.6 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126178309|ref|YP_001046274.1| - 0.023 15.2 2.2 0.023 15.2 2.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|126178309|ref|YP_001046274.1| - 0.026 15.1 14.7 0.04 14.5 2.7 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|126178309|ref|YP_001046274.1| - 0.18 12.0 11.4 0.38 10.9 11.4 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126178309|ref|YP_001046274.1| - 0.21 12.6 20.4 0.31 12.1 4.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Complex1_49kDa PF00346.19 gi|126178310|ref|YP_001046275.1| - 5e-61 206.2 0.1 1.4e-44 152.2 0.1 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|126178310|ref|YP_001046275.1| - 2.4e-15 56.4 1.9 6.6e-15 55.0 0.1 2.2 3 0 0 3 3 3 1 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 gi|126178311|ref|YP_001046276.1| - 2.9e-08 34.3 0.0 3.5e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BTRD1 PF17660.1 gi|126178311|ref|YP_001046276.1| - 0.011 15.6 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial tandem repeat domain 1 Oxidored_q6 PF01058.22 gi|126178312|ref|YP_001046277.1| - 3.1e-29 101.4 2.9 4.3e-29 101.0 2.9 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NADHdh PF00146.21 gi|126178313|ref|YP_001046278.1| - 3.9e-40 138.0 19.3 6e-40 137.4 19.3 1.2 1 0 0 1 1 1 1 NADH dehydrogenase Proton_antipo_M PF00361.20 gi|126178314|ref|YP_001046279.1| - 4.1e-47 160.8 32.4 4.1e-47 160.8 32.4 3.8 3 1 1 4 4 4 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|126178314|ref|YP_001046279.1| - 3.2e-08 33.5 1.2 3.2e-08 33.5 1.2 2.8 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HIT PF01230.23 gi|126178315|ref|YP_001046280.1| - 2.6e-21 76.2 0.0 3e-21 76.0 0.0 1.0 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|126178315|ref|YP_001046280.1| - 1e-07 32.4 0.0 1.2e-07 32.2 0.0 1.0 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|126178315|ref|YP_001046280.1| - 0.00058 19.7 0.2 0.0028 17.5 0.2 1.8 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DUF362 PF04015.12 gi|126178316|ref|YP_001046281.1| - 1.8e-48 165.5 0.0 2.4e-48 165.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|126178316|ref|YP_001046281.1| - 5.1e-10 38.8 16.2 6.8e-07 28.9 4.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126178316|ref|YP_001046281.1| - 8.4e-07 29.0 10.6 0.00055 20.0 0.9 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126178316|ref|YP_001046281.1| - 1.1e-06 28.4 15.6 2.8e-06 27.2 3.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126178316|ref|YP_001046281.1| - 5.8e-06 26.8 15.7 1.5e-05 25.5 15.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126178316|ref|YP_001046281.1| - 8.1e-06 26.2 6.9 0.0096 16.4 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126178316|ref|YP_001046281.1| - 2.1e-05 25.0 8.1 0.0039 17.7 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126178316|ref|YP_001046281.1| - 8.4e-05 22.7 15.6 0.00017 21.7 15.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126178316|ref|YP_001046281.1| - 0.00034 20.9 2.6 0.00034 20.9 2.6 2.8 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126178316|ref|YP_001046281.1| - 0.00047 20.2 16.5 0.0021 18.1 16.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126178316|ref|YP_001046281.1| - 0.0025 18.7 1.7 0.0025 18.7 1.7 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|126178316|ref|YP_001046281.1| - 0.0026 17.8 16.4 0.0087 16.1 3.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|126178316|ref|YP_001046281.1| - 0.009 16.8 0.1 0.009 16.8 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126178316|ref|YP_001046281.1| - 0.017 16.0 4.9 0.017 16.0 4.9 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|126178316|ref|YP_001046281.1| - 0.022 14.9 6.2 0.041 14.1 6.2 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Ribonucleas_3_3 PF14622.6 gi|126178317|ref|YP_001046282.1| - 6.6e-23 81.3 0.0 1.2e-22 80.4 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.26 gi|126178317|ref|YP_001046282.1| - 2.1e-12 47.6 0.0 7e-11 42.7 0.0 2.2 1 1 0 1 1 1 1 Ribonuclease III domain dsrm PF00035.26 gi|126178317|ref|YP_001046282.1| - 8e-09 36.1 0.0 3e-08 34.3 0.0 1.8 2 0 0 2 2 2 1 Double-stranded RNA binding motif MoeA_N PF03453.17 gi|126178319|ref|YP_001046284.1| - 6e-32 110.6 1.1 9.2e-32 110.0 1.1 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|126178319|ref|YP_001046284.1| - 1.7e-20 73.2 0.1 2.7e-20 72.5 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|126178319|ref|YP_001046284.1| - 2.6e-11 43.5 0.0 6.7e-11 42.2 0.0 1.8 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) GXGXG PF01493.19 gi|126178320|ref|YP_001046285.1| - 5e-10 39.3 16.7 3e-09 36.7 16.6 2.1 1 1 0 1 1 1 1 GXGXG motif Amidohydro_3 PF07969.11 gi|126178321|ref|YP_001046286.1| - 2.5e-67 228.4 0.0 3e-67 228.1 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|126178321|ref|YP_001046286.1| - 6.4e-08 32.3 0.1 3.4e-06 26.6 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Urease_alpha PF00449.20 gi|126178321|ref|YP_001046286.1| - 0.086 13.2 0.3 0.18 12.1 0.3 1.5 1 0 0 1 1 1 0 Urease alpha-subunit, N-terminal domain Molybdopterin PF00384.22 gi|126178322|ref|YP_001046287.1| - 2.2e-13 50.0 0.0 5.8e-13 48.6 0.0 1.8 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.22 gi|126178322|ref|YP_001046287.1| - 0.096 12.4 0.1 6.3 6.5 0.0 3.3 4 0 0 4 4 4 0 Thiamine pyrophosphate enzyme, central domain Molydop_binding PF01568.21 gi|126178323|ref|YP_001046288.1| - 2.3e-14 53.3 0.0 3e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain MCR_beta PF02241.18 gi|126178325|ref|YP_001046290.1| - 1.3e-132 441.0 6.4 2e-132 440.3 6.4 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|126178325|ref|YP_001046290.1| - 1e-78 263.1 0.9 1.6e-78 262.5 0.9 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_D PF02505.14 gi|126178326|ref|YP_001046291.1| - 4.9e-52 175.6 0.0 5.7e-52 175.4 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D Chordopox_G2 PF05796.12 gi|126178326|ref|YP_001046291.1| - 0.22 11.0 0.0 0.31 10.4 0.0 1.2 1 0 0 1 1 1 0 Chordopoxvirus protein G2 MCR_gamma PF02240.16 gi|126178327|ref|YP_001046292.1| - 4.9e-132 438.6 0.3 5.6e-132 438.5 0.3 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_alpha_N PF02745.15 gi|126178328|ref|YP_001046293.1| - 2.2e-153 509.3 0.2 3.2e-153 508.8 0.2 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|126178328|ref|YP_001046293.1| - 2e-67 225.5 1.2 3.8e-67 224.6 1.2 1.5 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain BofC_C PF08955.10 gi|126178328|ref|YP_001046293.1| - 0.13 12.4 0.1 1.7 8.8 0.0 2.4 2 0 0 2 2 2 0 BofC C-terminal domain IMS PF00817.20 gi|126178330|ref|YP_001046295.1| - 4.1e-45 153.4 0.0 1.6e-44 151.5 0.0 1.9 2 0 0 2 2 2 1 impB/mucB/samB family IMS_C PF11799.8 gi|126178330|ref|YP_001046295.1| - 1.6e-21 77.2 0.0 3.4e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|126178330|ref|YP_001046295.1| - 1.6e-07 31.3 0.1 3.3e-07 30.3 0.1 1.6 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.6 gi|126178330|ref|YP_001046295.1| - 0.00021 21.8 1.2 0.00037 21.0 0.1 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|126178330|ref|YP_001046295.1| - 0.00072 19.7 0.0 0.0014 18.8 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus DUF4332 PF14229.6 gi|126178330|ref|YP_001046295.1| - 0.002 18.4 0.0 0.0042 17.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) NUDIX PF00293.28 gi|126178330|ref|YP_001046295.1| - 0.095 12.7 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 NUDIX domain SDH_sah PF01972.16 gi|126178331|ref|YP_001046296.1| - 5.4e-113 376.7 0.0 5.9e-113 376.6 0.0 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|126178331|ref|YP_001046296.1| - 0.00011 22.2 0.0 0.0002 21.3 0.0 1.4 1 0 0 1 1 1 1 Clp protease ECH_1 PF00378.20 gi|126178331|ref|YP_001046296.1| - 0.0017 17.7 0.0 0.0026 17.1 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 gi|126178331|ref|YP_001046296.1| - 0.0067 16.4 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S49 Amdase PF17645.1 gi|126178331|ref|YP_001046296.1| - 0.11 12.1 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Arylmalonate decarboxylase HNH PF01844.23 gi|126178333|ref|YP_001046298.1| - 0.00019 21.5 6.1 0.00019 21.5 6.1 2.0 2 0 0 2 2 2 1 HNH endonuclease HNH_3 PF13392.6 gi|126178333|ref|YP_001046298.1| - 0.00069 19.3 2.1 0.00069 19.3 2.1 1.5 1 1 0 1 1 1 1 HNH endonuclease HNH_2 PF13391.6 gi|126178333|ref|YP_001046298.1| - 0.081 13.1 0.1 0.13 12.4 0.1 1.4 1 0 0 1 1 1 0 HNH endonuclease HNH_5 PF14279.6 gi|126178333|ref|YP_001046298.1| - 1.8 8.5 6.3 0.59 10.0 1.2 2.6 2 1 0 2 2 2 0 HNH endonuclease TPR_1 PF00515.28 gi|126178334|ref|YP_001046299.1| - 2.1e-61 201.4 0.1 6.7e-09 35.2 0.0 7.2 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_2 PF07719.17 gi|126178334|ref|YP_001046299.1| - 2.1e-55 180.4 0.1 1.1e-07 31.4 0.0 7.1 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|126178334|ref|YP_001046299.1| - 1.4e-42 143.1 0.0 3.8e-08 32.9 0.0 7.1 4 2 3 7 7 7 6 TPR repeat TPR_8 PF13181.6 gi|126178334|ref|YP_001046299.1| - 3.6e-36 120.3 0.0 1.6e-05 24.8 0.0 7.1 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_14 PF13428.6 gi|126178334|ref|YP_001046299.1| - 1.9e-33 112.2 7.7 1.2e-05 25.7 0.6 7.1 1 1 6 7 7 7 7 Tetratricopeptide repeat TPR_17 PF13431.6 gi|126178334|ref|YP_001046299.1| - 4.1e-30 102.0 0.6 0.00041 20.5 0.0 7.4 8 0 0 8 8 7 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|126178334|ref|YP_001046299.1| - 5.4e-30 103.8 2.9 1.6e-08 35.1 0.1 4.3 1 1 3 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|126178334|ref|YP_001046299.1| - 1.3e-26 92.7 4.9 4.5e-07 30.1 0.1 6.2 3 2 3 6 6 6 6 Tetratricopeptide repeat TPR_19 PF14559.6 gi|126178334|ref|YP_001046299.1| - 1e-24 86.8 0.0 3.3e-07 30.7 0.0 4.1 3 1 0 4 4 4 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|126178334|ref|YP_001046299.1| - 5.3e-23 81.0 10.7 3e-07 30.5 2.9 5.1 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|126178334|ref|YP_001046299.1| - 2.6e-21 74.0 0.4 0.059 13.4 0.0 6.9 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_6 PF13174.6 gi|126178334|ref|YP_001046299.1| - 1.7e-16 59.6 0.0 0.061 14.0 0.0 6.7 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_10 PF13374.6 gi|126178334|ref|YP_001046299.1| - 2.8e-15 55.6 7.0 0.04 13.8 0.4 7.6 8 0 0 8 8 8 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|126178334|ref|YP_001046299.1| - 2.7e-11 43.5 0.4 7.2e-07 29.3 0.0 4.0 2 1 2 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.6 gi|126178334|ref|YP_001046299.1| - 1.2e-08 34.9 1.9 0.048 13.7 0.0 5.5 6 0 0 6 6 6 2 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 gi|126178334|ref|YP_001046299.1| - 4e-07 29.3 0.0 0.059 12.3 0.0 3.1 2 1 0 3 3 3 3 NMDA receptor-regulated protein 1 TPR_15 PF13429.6 gi|126178334|ref|YP_001046299.1| - 5.5e-06 25.8 0.1 0.14 11.3 0.0 3.5 1 1 3 4 4 4 2 Tetratricopeptide repeat TPR_4 PF07721.14 gi|126178334|ref|YP_001046299.1| - 6e-06 26.4 9.0 0.84 10.5 0.8 5.9 6 0 0 6 6 5 2 Tetratricopeptide repeat BTAD PF03704.17 gi|126178334|ref|YP_001046299.1| - 2.2e-05 24.9 1.1 0.0015 19.0 0.9 3.1 2 1 1 3 3 3 1 Bacterial transcriptional activator domain MIT PF04212.18 gi|126178334|ref|YP_001046299.1| - 2.5e-05 24.2 0.1 14 5.9 0.0 5.4 6 0 0 6 6 6 0 MIT (microtubule interacting and transport) domain DUF3856 PF12968.7 gi|126178334|ref|YP_001046299.1| - 5e-05 23.4 0.4 12 6.0 0.0 4.9 2 2 3 5 5 5 0 Domain of Unknown Function (DUF3856) PPR PF01535.20 gi|126178334|ref|YP_001046299.1| - 0.00033 20.7 2.0 5.8 7.4 0.0 5.2 7 0 0 7 7 5 0 PPR repeat NRBF2_MIT PF17169.4 gi|126178334|ref|YP_001046299.1| - 0.00045 20.4 4.4 10 6.5 0.0 5.6 5 2 1 6 6 6 0 MIT domain of nuclear receptor-binding factor 2 FAT PF02259.23 gi|126178334|ref|YP_001046299.1| - 0.0069 15.7 0.1 1.9 7.6 0.0 3.4 1 1 2 3 3 3 1 FAT domain ChAPs PF09295.10 gi|126178334|ref|YP_001046299.1| - 0.013 14.5 0.0 0.18 10.8 0.0 2.4 2 1 1 3 3 3 0 ChAPs (Chs5p-Arf1p-binding proteins) DUF5113 PF17140.4 gi|126178334|ref|YP_001046299.1| - 0.015 15.1 0.2 43 3.9 0.0 4.4 3 2 3 6 6 6 0 Domain of unknown function (DUF5113) SRP_TPR_like PF17004.5 gi|126178334|ref|YP_001046299.1| - 0.02 14.9 0.0 0.11 12.6 0.0 2.3 1 1 0 2 2 2 0 Putative TPR-like repeat TPR_3 PF07720.12 gi|126178334|ref|YP_001046299.1| - 0.039 14.0 0.1 13 5.9 0.0 3.1 3 0 0 3 3 2 0 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|126178334|ref|YP_001046299.1| - 0.058 13.9 0.0 3.3 8.1 0.0 2.3 2 0 0 2 2 2 0 Alkyl sulfatase dimerisation Gemin6 PF06372.12 gi|126178334|ref|YP_001046299.1| - 0.061 12.9 0.0 29 4.2 0.0 3.0 2 1 1 3 3 3 0 Gemin6 protein COPI_C PF06957.11 gi|126178334|ref|YP_001046299.1| - 0.074 11.8 0.0 7.2 5.2 0.0 2.3 2 0 0 2 2 2 0 Coatomer (COPI) alpha subunit C-terminus TPR_MalT PF17874.1 gi|126178334|ref|YP_001046299.1| - 0.13 11.6 0.0 0.92 8.8 0.0 2.4 3 0 0 3 3 3 0 MalT-like TPR region GyrI-like PF06445.15 gi|126178335|ref|YP_001046300.1| - 6e-22 78.6 0.0 7.9e-22 78.2 0.0 1.2 1 0 0 1 1 1 1 GyrI-like small molecule binding domain MerR_1 PF13411.6 gi|126178335|ref|YP_001046300.1| - 6.5e-13 48.6 0.1 1.3e-12 47.7 0.1 1.5 1 0 0 1 1 1 1 MerR HTH family regulatory protein Cass2 PF14526.6 gi|126178335|ref|YP_001046300.1| - 1e-10 42.0 0.0 1.6e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 Integron-associated effector binding protein MerR PF00376.23 gi|126178335|ref|YP_001046300.1| - 6.1e-09 35.5 0.2 1.2e-08 34.6 0.2 1.5 1 0 0 1 1 1 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 gi|126178335|ref|YP_001046300.1| - 0.014 15.9 2.2 0.038 14.5 2.2 1.7 1 0 0 1 1 1 0 MerR, DNA binding Alpha-amylase PF00128.24 gi|126178336|ref|YP_001046301.1| - 4.2e-14 52.9 0.0 1.9e-12 47.4 0.0 2.4 1 1 0 1 1 1 1 Alpha amylase, catalytic domain hDGE_amylase PF14701.6 gi|126178336|ref|YP_001046301.1| - 0.014 14.5 0.0 0.042 13.0 0.0 1.6 2 0 0 2 2 2 0 Glycogen debranching enzyme, glucanotransferase domain Malt_amylase_C PF16657.5 gi|126178336|ref|YP_001046301.1| - 0.052 13.7 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain FAD_binding_3 PF01494.19 gi|126178337|ref|YP_001046302.1| - 5e-17 62.2 0.4 1.3e-16 60.8 0.4 1.5 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.14 gi|126178337|ref|YP_001046302.1| - 1.8e-10 40.3 0.0 0.00014 20.9 0.0 3.0 3 0 0 3 3 3 3 Tryptophan halogenase DAO PF01266.24 gi|126178337|ref|YP_001046302.1| - 7e-10 39.0 3.2 0.00012 21.8 0.3 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|126178337|ref|YP_001046302.1| - 1.1e-09 38.0 0.1 1e-05 24.9 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|126178337|ref|YP_001046302.1| - 1.3e-07 31.4 0.5 2.8e-07 30.3 0.5 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|126178337|ref|YP_001046302.1| - 1.3e-07 31.7 0.1 4.2e-07 30.1 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|126178337|ref|YP_001046302.1| - 9.5e-06 26.1 0.0 0.00067 20.2 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|126178337|ref|YP_001046302.1| - 2.5e-05 23.2 0.2 7.2e-05 21.7 0.1 1.7 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|126178337|ref|YP_001046302.1| - 3e-05 23.3 3.1 4.6e-05 22.7 0.2 2.3 3 0 0 3 3 3 1 FAD binding domain GIDA PF01134.22 gi|126178337|ref|YP_001046302.1| - 9.1e-05 21.7 0.2 0.00017 20.8 0.1 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|126178337|ref|YP_001046302.1| - 0.0003 20.2 0.1 0.076 12.3 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|126178337|ref|YP_001046302.1| - 0.00057 19.2 0.0 0.0011 18.3 0.0 1.3 1 0 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.12 gi|126178337|ref|YP_001046302.1| - 0.012 14.7 6.0 0.04 13.0 2.0 2.8 2 1 0 2 2 2 0 Lycopene cyclase protein ApbA PF02558.16 gi|126178337|ref|YP_001046302.1| - 0.021 14.5 0.0 0.042 13.5 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Amino_oxidase PF01593.24 gi|126178337|ref|YP_001046302.1| - 0.08 12.2 0.5 2.3 7.4 0.0 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase 3HCDH_N PF02737.18 gi|126178337|ref|YP_001046302.1| - 0.24 11.3 0.3 0.48 10.3 0.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HHH_3 PF12836.7 gi|126178338|ref|YP_001046303.1| - 2.8e-07 30.7 0.0 8.3e-07 29.2 0.0 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif Radical_SAM PF04055.21 gi|126178338|ref|YP_001046303.1| - 4.3e-07 30.5 0.0 1.3e-06 28.9 0.0 1.9 1 1 0 1 1 1 1 Radical SAM superfamily HHH PF00633.23 gi|126178338|ref|YP_001046303.1| - 0.00027 20.6 0.0 0.00081 19.1 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|126178338|ref|YP_001046303.1| - 0.0018 18.8 0.0 0.0054 17.3 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain Opiods_neuropep PF01160.18 gi|126178338|ref|YP_001046303.1| - 0.018 15.1 0.2 0.032 14.3 0.2 1.4 1 0 0 1 1 1 0 Vertebrate endogenous opioids neuropeptide HHH_6 PF14579.6 gi|126178338|ref|YP_001046303.1| - 0.034 14.4 0.0 0.095 13.0 0.0 1.7 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF2795 PF11387.8 gi|126178339|ref|YP_001046304.1| - 1.7e-33 114.5 0.1 3e-15 56.1 0.1 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF2795) PRC PF05239.16 gi|126178339|ref|YP_001046304.1| - 3.9e-10 39.7 0.0 6.5e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 PRC-barrel domain DUF2795 PF11387.8 gi|126178340|ref|YP_001046305.1| - 1.5e-50 169.2 0.8 5.5e-16 58.5 0.0 4.1 4 0 0 4 4 4 3 Protein of unknown function (DUF2795) PRC PF05239.16 gi|126178340|ref|YP_001046305.1| - 7.7e-15 54.7 0.0 1.3e-14 54.0 0.0 1.3 1 0 0 1 1 1 1 PRC-barrel domain Vps8 PF12816.7 gi|126178340|ref|YP_001046305.1| - 0.11 12.0 0.0 19 4.7 0.0 2.9 2 1 1 3 3 3 0 Golgi CORVET complex core vacuolar protein 8 Radical_SAM PF04055.21 gi|126178341|ref|YP_001046306.1| - 2e-26 93.4 0.0 4.4e-26 92.2 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|126178341|ref|YP_001046306.1| - 2.3e-10 40.5 0.5 7.8e-09 35.6 0.5 2.6 1 1 0 1 1 1 1 B12 binding domain DUF2225 PF09986.9 gi|126178342|ref|YP_001046307.1| - 0.00016 21.5 0.8 0.0034 17.1 0.8 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2225) TPR_19 PF14559.6 gi|126178342|ref|YP_001046307.1| - 0.01 16.3 0.4 0.024 15.2 0.4 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|126178342|ref|YP_001046307.1| - 0.06 14.0 1.3 0.06 14.0 1.3 2.1 3 0 0 3 3 3 0 Tetratricopeptide repeat HisG PF01634.18 gi|126178342|ref|YP_001046307.1| - 0.095 12.7 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 ATP phosphoribosyltransferase TPR_14 PF13428.6 gi|126178342|ref|YP_001046307.1| - 0.095 13.6 0.3 0.095 13.6 0.3 2.9 2 2 0 2 2 2 0 Tetratricopeptide repeat ABC2_membrane_3 PF12698.7 gi|126178343|ref|YP_001046308.1| - 6.9e-16 58.3 3.6 8.9e-16 57.9 3.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|126178343|ref|YP_001046308.1| - 2.8e-07 30.1 12.2 7.4e-07 28.7 12.2 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|126178343|ref|YP_001046308.1| - 0.001 19.1 7.4 0.001 19.1 7.4 2.3 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|126178343|ref|YP_001046308.1| - 0.51 9.9 13.2 0.061 12.9 7.1 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|126178345|ref|YP_001046310.1| - 5.2e-28 98.3 0.0 7.3e-28 97.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126178345|ref|YP_001046310.1| - 2.8e-12 47.1 0.6 1.6e-06 28.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|126178345|ref|YP_001046310.1| - 0.00064 20.3 0.0 0.0013 19.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|126178345|ref|YP_001046310.1| - 0.00064 19.5 0.0 0.021 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|126178345|ref|YP_001046310.1| - 0.0053 16.5 0.1 0.01 15.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain PhoH PF02562.16 gi|126178345|ref|YP_001046310.1| - 0.017 14.6 0.1 0.12 11.9 0.0 2.0 1 1 1 2 2 2 0 PhoH-like protein SMC_N PF02463.19 gi|126178345|ref|YP_001046310.1| - 0.018 14.5 0.0 3.3 7.1 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain GTP_EFTU PF00009.27 gi|126178345|ref|YP_001046310.1| - 0.029 13.9 0.0 0.31 10.5 0.1 2.0 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_24 PF13479.6 gi|126178345|ref|YP_001046310.1| - 0.031 14.0 0.0 1 9.1 0.0 2.7 3 0 0 3 3 3 0 AAA domain AAA_27 PF13514.6 gi|126178345|ref|YP_001046310.1| - 0.034 13.7 0.0 0.16 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|126178345|ref|YP_001046310.1| - 0.082 13.1 0.2 0.68 10.1 0.2 2.3 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|126178345|ref|YP_001046310.1| - 0.083 13.2 0.1 0.37 11.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF4162 PF13732.6 gi|126178345|ref|YP_001046310.1| - 0.1 13.3 0.0 0.21 12.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) RsgA_GTPase PF03193.16 gi|126178345|ref|YP_001046310.1| - 0.16 11.8 0.0 0.32 10.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|126178345|ref|YP_001046310.1| - 0.19 11.4 0.1 0.3 10.8 0.1 1.5 1 1 0 1 1 1 0 AAA domain TrkA_N PF02254.18 gi|126178347|ref|YP_001046312.1| - 1.4e-23 83.3 0.0 3e-23 82.3 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.20 gi|126178347|ref|YP_001046312.1| - 3.1e-16 59.4 0.1 6.4e-14 52.0 0.1 2.3 2 0 0 2 2 2 2 DHH family DHHA1 PF02272.19 gi|126178347|ref|YP_001046312.1| - 1.4e-09 38.5 0.2 4.9e-09 36.7 0.0 2.0 2 1 0 2 2 2 1 DHHA1 domain Sacchrp_dh_NADP PF03435.18 gi|126178347|ref|YP_001046312.1| - 0.00085 19.6 0.0 0.0018 18.5 0.0 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|126178347|ref|YP_001046312.1| - 0.044 13.8 0.0 0.098 12.7 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|126178347|ref|YP_001046312.1| - 0.064 12.9 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|126178347|ref|YP_001046312.1| - 0.091 12.3 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MAF_flag10 PF01973.18 gi|126178348|ref|YP_001046313.1| - 1.8e-25 89.6 0.0 2.3e-25 89.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 Radical_SAM PF04055.21 gi|126178349|ref|YP_001046314.1| - 9.8e-15 55.3 0.0 1.7e-14 54.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.7 gi|126178349|ref|YP_001046314.1| - 9.3e-06 25.8 0.0 2.2e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|126178349|ref|YP_001046314.1| - 0.029 14.3 0.1 1.4 8.9 0.1 2.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif CBS PF00571.28 gi|126178350|ref|YP_001046315.1| - 1.7e-24 86.0 8.6 5e-15 55.7 2.6 2.5 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|126178350|ref|YP_001046315.1| - 3.2e-12 46.3 7.7 1.5e-06 27.7 0.4 2.5 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|126178350|ref|YP_001046315.1| - 0.064 12.9 8.2 0.021 14.4 4.5 2.0 1 1 1 2 2 2 0 Peptidase M50B-like PRC PF05239.16 gi|126178351|ref|YP_001046316.1| - 7.5e-11 42.0 2.3 9.2e-11 41.7 2.3 1.1 1 0 0 1 1 1 1 PRC-barrel domain Thg1 PF04446.12 gi|126178352|ref|YP_001046317.1| - 1.2e-20 73.7 0.0 1.9e-20 73.2 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.6 gi|126178352|ref|YP_001046317.1| - 1.6e-07 31.5 0.0 2.3e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 Thg1 C terminal domain tRNA-synt_1 PF00133.22 gi|126178353|ref|YP_001046318.1| - 7.1e-190 632.2 0.1 9.9e-190 631.8 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|126178353|ref|YP_001046318.1| - 1.1e-30 106.7 0.0 2.4e-30 105.5 0.0 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|126178353|ref|YP_001046318.1| - 8.1e-26 90.7 5.1 6.2e-10 38.4 0.2 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|126178353|ref|YP_001046318.1| - 3.9e-06 26.4 0.0 1.7e-05 24.3 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|126178353|ref|YP_001046318.1| - 7.3e-05 21.8 0.2 0.00035 19.6 0.0 2.1 3 0 0 3 3 3 1 tRNA synthetases class I (K) LDcluster4 PF18306.1 gi|126178354|ref|YP_001046319.1| - 9.7e-41 139.0 6.9 1.1e-40 138.8 6.9 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|126178354|ref|YP_001046319.1| - 2.8e-08 33.9 0.4 4.8e-08 33.2 0.4 1.4 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.15 gi|126178354|ref|YP_001046319.1| - 8e-05 22.0 1.4 0.00093 18.5 0.5 2.0 2 0 0 2 2 2 1 DNA recombination-mediator protein A Nuc_deoxyrib_tr PF05014.15 gi|126178354|ref|YP_001046319.1| - 0.13 12.3 0.0 0.29 11.2 0.0 1.5 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase TPALS PF18178.1 gi|126178354|ref|YP_001046319.1| - 0.15 11.5 0.2 0.25 10.7 0.2 1.3 1 0 0 1 1 1 0 TIR- and PNP-associating SLOG family DAGK_cat PF00781.24 gi|126178354|ref|YP_001046319.1| - 0.89 9.2 7.0 1.4 8.6 0.5 2.1 1 1 1 2 2 2 0 Diacylglycerol kinase catalytic domain PBP_like PF12727.7 gi|126178355|ref|YP_001046320.1| - 4e-56 189.2 0.0 9.2e-54 181.5 0.0 2.3 2 0 0 2 2 2 2 PBP superfamily domain MoeA_N PF03453.17 gi|126178355|ref|YP_001046320.1| - 2.8e-36 124.7 0.6 5.6e-36 123.7 0.6 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|126178355|ref|YP_001046320.1| - 1.7e-25 89.4 0.1 4e-25 88.1 0.1 1.7 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|126178355|ref|YP_001046320.1| - 1.4e-10 41.1 0.1 4.2e-10 39.7 0.1 1.9 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) LysR_substrate PF03466.20 gi|126178355|ref|YP_001046320.1| - 0.0017 17.8 0.8 0.0084 15.5 0.2 2.5 3 0 0 3 3 3 1 LysR substrate binding domain MoeA_N PF03453.17 gi|126178356|ref|YP_001046321.1| - 2.2e-42 144.5 2.8 3.8e-42 143.7 2.8 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|126178356|ref|YP_001046321.1| - 7.9e-22 77.5 0.1 1.4e-21 76.7 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|126178356|ref|YP_001046321.1| - 1.6e-15 57.0 0.1 4.5e-15 55.6 0.1 1.8 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) tRNA_deacylase PF04414.12 gi|126178358|ref|YP_001046323.1| - 3.1e-63 213.0 0.0 4e-63 212.7 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Tubulin PF00091.25 gi|126178359|ref|YP_001046324.1| - 6.2e-42 144.0 0.2 9.4e-42 143.4 0.2 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|126178359|ref|YP_001046324.1| - 1.3e-35 121.5 0.6 3.6e-35 120.2 0.6 1.8 1 0 0 1 1 1 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|126178359|ref|YP_001046324.1| - 0.0017 18.3 0.1 0.0042 17.0 0.1 1.7 1 0 0 1 1 1 1 NAD(P)H-binding Cpn10 PF00166.21 gi|126178359|ref|YP_001046324.1| - 0.063 13.3 0.5 0.72 10.0 0.0 2.4 2 1 0 2 2 2 0 Chaperonin 10 Kd subunit Tubulin_2 PF13809.6 gi|126178359|ref|YP_001046324.1| - 0.94 8.6 9.1 0.25 10.5 1.8 2.5 2 1 0 2 2 2 0 Tubulin like SecE PF00584.20 gi|126178360|ref|YP_001046325.1| - 2.8e-06 27.1 0.3 4e-06 26.6 0.3 1.3 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Spt5-NGN PF03439.13 gi|126178361|ref|YP_001046326.1| - 5.1e-23 80.8 0.8 9e-23 80.0 0.8 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|126178361|ref|YP_001046326.1| - 1e-06 28.4 4.2 3e-06 27.0 0.8 2.6 2 0 0 2 2 2 1 KOW motif Glyco_hydro_65C PF03633.15 gi|126178361|ref|YP_001046326.1| - 0.054 13.4 0.3 0.13 12.2 0.2 1.7 2 0 0 2 2 2 0 Glycosyl hydrolase family 65, C-terminal domain Ribosomal_L11_N PF03946.14 gi|126178362|ref|YP_001046327.1| - 1.1e-24 86.0 1.3 1.1e-24 86.0 1.3 1.6 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|126178362|ref|YP_001046327.1| - 1.4e-17 63.9 0.1 2.2e-17 63.3 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain YonK PF09642.10 gi|126178362|ref|YP_001046327.1| - 0.056 13.6 0.0 8.6 6.6 0.1 2.3 2 0 0 2 2 2 0 YonK protein Ribosomal_L1 PF00687.21 gi|126178363|ref|YP_001046328.1| - 8.7e-44 149.7 0.0 1.1e-43 149.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family KH_10 PF17905.1 gi|126178363|ref|YP_001046328.1| - 0.013 15.9 0.1 0.19 12.2 0.0 2.2 2 0 0 2 2 2 0 GLD-3 KH domain 5 Ribosomal_L10 PF00466.20 gi|126178364|ref|YP_001046329.1| - 2.3e-24 85.4 0.0 4.9e-24 84.4 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|126178364|ref|YP_001046329.1| - 8.9e-21 73.7 0.6 1.8e-20 72.7 0.6 1.5 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|126178364|ref|YP_001046329.1| - 4.7e-05 23.9 30.6 0.0023 18.5 30.6 2.8 1 1 0 1 1 1 1 60s Acidic ribosomal protein Ribosomal_60s PF00428.19 gi|126178365|ref|YP_001046330.1| - 3.3e-22 78.9 22.0 3.9e-22 78.6 22.0 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein EF-hand_14 PF17959.1 gi|126178365|ref|YP_001046330.1| - 0.088 13.2 0.0 0.12 12.7 0.0 1.2 1 0 0 1 1 1 0 EF-hand domain TFIID_30kDa PF03540.13 gi|126178365|ref|YP_001046330.1| - 0.12 12.3 0.0 0.21 11.5 0.0 1.5 1 1 0 1 1 1 0 Transcription initiation factor TFIID 23-30kDa subunit PepSY_2 PF13670.6 gi|126178365|ref|YP_001046330.1| - 0.75 9.8 10.3 15 5.7 0.0 2.2 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF3138 PF11336.8 gi|126178365|ref|YP_001046330.1| - 3.6 6.1 6.4 3.8 6.0 6.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) AlbA_2 PF04326.14 gi|126178366|ref|YP_001046331.1| - 4e-11 43.3 0.0 7.9e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Putative DNA-binding domain HATPase_c_4 PF13749.6 gi|126178366|ref|YP_001046331.1| - 7.2e-11 42.1 0.0 1.5e-10 41.1 0.0 1.6 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal OB_Dis3 PF17849.1 gi|126178366|ref|YP_001046331.1| - 0.016 15.2 0.3 9 6.4 0.0 3.5 3 0 0 3 3 3 0 Dis3-like cold-shock domain 2 (CSD2) Sua5_yciO_yrdC PF01300.18 gi|126178367|ref|YP_001046332.1| - 4.6e-34 117.5 0.0 7.7e-34 116.7 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination HypF_C PF17788.1 gi|126178367|ref|YP_001046332.1| - 4.1e-23 82.0 0.0 4.1e-23 82.0 0.0 1.7 2 0 0 2 2 2 1 HypF Kae1-like domain zf-HYPF PF07503.12 gi|126178367|ref|YP_001046332.1| - 5.2e-23 80.5 12.3 4.7e-13 48.7 3.8 2.6 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.18 gi|126178367|ref|YP_001046332.1| - 6.5e-19 68.1 0.1 1.2e-18 67.3 0.1 1.5 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|126178367|ref|YP_001046332.1| - 4.5e-09 36.4 0.5 1.2e-06 28.4 0.0 2.2 2 0 0 2 2 2 2 Glycoprotease family Carbam_trans_N PF02543.15 gi|126178367|ref|YP_001046332.1| - 3.1e-05 23.8 0.1 0.00029 20.6 0.0 2.0 2 0 0 2 2 2 1 Carbamoyltransferase N-terminus BcrAD_BadFG PF01869.20 gi|126178367|ref|YP_001046332.1| - 0.00028 20.5 0.1 0.00048 19.7 0.1 1.3 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Lar_restr_allev PF14354.6 gi|126178367|ref|YP_001046332.1| - 1.1 9.7 6.4 0.66 10.4 1.3 2.7 2 1 0 2 2 2 0 Restriction alleviation protein Lar FYVE PF01363.21 gi|126178367|ref|YP_001046332.1| - 1.4 9.1 4.5 0.37 11.0 0.2 2.2 2 1 0 3 3 3 0 FYVE zinc finger ArsR PF09824.9 gi|126178368|ref|YP_001046333.1| - 9.9e-64 213.7 0.0 1.1e-63 213.5 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator Clathrin PF00637.20 gi|126178368|ref|YP_001046333.1| - 0.0004 20.3 0.1 0.00069 19.5 0.1 1.3 1 0 0 1 1 1 1 Region in Clathrin and VPS MarR_2 PF12802.7 gi|126178369|ref|YP_001046334.1| - 1.2e-10 41.1 0.1 3.6e-10 39.6 0.1 1.8 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|126178369|ref|YP_001046334.1| - 3.8e-10 39.1 0.0 7.8e-10 38.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|126178369|ref|YP_001046334.1| - 1.1e-08 34.9 0.1 3.8e-08 33.1 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|126178369|ref|YP_001046334.1| - 4.1e-07 29.9 0.1 1.6e-06 28.0 0.1 2.0 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|126178369|ref|YP_001046334.1| - 2.2e-05 24.1 0.0 4.2e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|126178369|ref|YP_001046334.1| - 3.9e-05 23.3 1.1 7.2e-05 22.5 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_11 PF08279.12 gi|126178369|ref|YP_001046334.1| - 4.1e-05 23.4 0.0 8.8e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|126178369|ref|YP_001046334.1| - 4.5e-05 23.0 0.8 0.00022 20.8 0.1 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|126178369|ref|YP_001046334.1| - 5.4e-05 23.0 0.0 0.00016 21.5 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|126178369|ref|YP_001046334.1| - 0.00014 21.9 0.0 0.00036 20.7 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain AbiEi_4 PF13338.6 gi|126178369|ref|YP_001046334.1| - 0.00018 21.6 0.1 0.00064 19.8 0.1 2.0 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin Rrf2 PF02082.20 gi|126178369|ref|YP_001046334.1| - 0.00027 21.2 0.0 0.00053 20.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator DUF4423 PF14394.6 gi|126178369|ref|YP_001046334.1| - 0.00038 20.2 0.0 0.00065 19.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_27 PF13463.6 gi|126178369|ref|YP_001046334.1| - 0.00046 20.6 0.1 0.0012 19.3 0.0 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|126178369|ref|YP_001046334.1| - 0.00053 19.9 0.0 0.00088 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_13 PF11972.8 gi|126178369|ref|YP_001046334.1| - 0.001 19.0 0.1 0.0021 18.1 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain TrmB PF01978.19 gi|126178369|ref|YP_001046334.1| - 0.0016 18.3 0.0 0.0096 15.8 0.1 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_3 PF01381.22 gi|126178369|ref|YP_001046334.1| - 0.0019 18.2 0.1 0.01 15.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_29 PF13551.6 gi|126178369|ref|YP_001046334.1| - 0.0022 18.0 0.1 0.024 14.7 0.0 2.7 3 1 0 3 3 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|126178369|ref|YP_001046334.1| - 0.0041 17.2 2.3 0.0047 17.0 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Mnd1 PF03962.15 gi|126178369|ref|YP_001046334.1| - 0.0052 17.1 0.0 0.013 15.8 0.0 1.6 1 0 0 1 1 1 1 Mnd1 HTH domain HTH_20 PF12840.7 gi|126178369|ref|YP_001046334.1| - 0.0085 16.1 0.3 0.024 14.7 0.0 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|126178369|ref|YP_001046334.1| - 0.012 15.4 0.0 0.047 13.5 0.0 1.9 2 0 0 2 2 1 0 HTH DNA binding domain EAP30 PF04157.16 gi|126178369|ref|YP_001046334.1| - 0.019 14.3 0.2 0.21 10.9 0.0 2.3 3 0 0 3 3 3 0 EAP30/Vps36 family YdaS_antitoxin PF15943.5 gi|126178369|ref|YP_001046334.1| - 0.032 14.1 0.1 0.22 11.4 0.0 2.2 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF4364 PF14277.6 gi|126178369|ref|YP_001046334.1| - 0.05 13.3 0.0 0.083 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) SMC_ScpB PF04079.16 gi|126178369|ref|YP_001046334.1| - 0.084 12.5 0.1 0.15 11.7 0.1 1.5 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB HTH_1 PF00126.27 gi|126178369|ref|YP_001046334.1| - 0.091 12.7 1.4 0.24 11.4 0.1 2.4 2 1 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_36 PF13730.6 gi|126178369|ref|YP_001046334.1| - 0.12 12.3 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1967 PF09269.11 gi|126178369|ref|YP_001046334.1| - 0.15 12.0 0.2 1.5 8.8 0.1 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF1967) Mrr_N PF14338.6 gi|126178369|ref|YP_001046334.1| - 0.17 12.1 0.4 1.5 9.0 0.0 2.2 2 1 1 3 3 2 0 Mrr N-terminal domain RPA_C PF08784.11 gi|126178369|ref|YP_001046334.1| - 0.19 12.4 0.1 0.55 10.9 0.0 1.8 2 0 0 2 2 1 0 Replication protein A C terminal DEAD PF00270.29 gi|126178370|ref|YP_001046335.1| - 5.5e-19 68.6 0.0 2.1e-18 66.7 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|126178370|ref|YP_001046335.1| - 6.2e-16 58.7 0.0 1.2e-15 57.8 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|126178370|ref|YP_001046335.1| - 1.5e-07 31.6 0.0 2.6e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Prim_Zn_Ribbon PF08273.12 gi|126178370|ref|YP_001046335.1| - 0.1 12.9 1.2 0.24 11.7 1.2 1.5 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase PAS_9 PF13426.7 gi|126178371|ref|YP_001046336.1| - 6e-06 26.5 0.0 0.00012 22.3 0.0 2.7 2 2 1 3 3 3 1 PAS domain PAS_8 PF13188.7 gi|126178371|ref|YP_001046336.1| - 0.0001 22.2 0.0 0.00032 20.6 0.0 1.9 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 gi|126178371|ref|YP_001046336.1| - 0.00012 22.0 0.1 0.00012 22.0 0.1 2.4 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|126178371|ref|YP_001046336.1| - 0.00014 22.1 0.4 0.0037 17.5 0.4 2.7 1 1 0 1 1 1 1 PAS fold Exonuc_VII_L PF02601.15 gi|126178371|ref|YP_001046336.1| - 0.84 9.2 4.1 1.2 8.6 4.1 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit OmpH PF03938.14 gi|126178371|ref|YP_001046336.1| - 3.9 7.8 9.7 8.7 6.7 9.5 1.6 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) MFS_1 PF07690.16 gi|126178372|ref|YP_001046337.1| - 9.1e-54 182.7 57.6 1.3e-34 119.7 28.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|126178372|ref|YP_001046337.1| - 8e-10 38.1 10.0 8e-10 38.1 10.0 2.4 1 1 1 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|126178372|ref|YP_001046337.1| - 1.5e-06 26.9 25.4 0.00067 18.2 5.0 2.1 1 1 1 2 2 2 2 Transmembrane secretion effector MFS_4 PF06779.14 gi|126178372|ref|YP_001046337.1| - 1.9e-06 27.4 28.4 2.6e-06 27.0 27.1 1.8 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MFS_2 PF13347.6 gi|126178372|ref|YP_001046337.1| - 0.00058 18.5 13.4 0.00058 18.5 13.4 3.1 2 1 1 3 3 3 1 MFS/sugar transport protein DUF3989 PF13150.6 gi|126178372|ref|YP_001046337.1| - 0.26 11.0 0.7 0.69 9.7 0.7 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3989) Methyltransf_25 PF13649.6 gi|126178373|ref|YP_001046338.1| - 0.093 13.4 0.0 0.2 12.4 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|126178373|ref|YP_001046338.1| - 0.22 10.9 0.1 0.42 10.0 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Bactofilin PF04519.13 gi|126178374|ref|YP_001046339.1| - 1.6e-14 54.0 6.5 4.5e-09 36.5 0.3 3.1 2 1 0 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|126178374|ref|YP_001046339.1| - 1.4e-05 24.6 17.4 0.0018 18.0 0.1 5.9 5 2 1 6 6 6 2 Bacterial transferase hexapeptide (six repeats) DUF3494 PF11999.8 gi|126178374|ref|YP_001046339.1| - 0.099 12.3 0.0 2 8.0 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3494) DUF2572 PF10833.8 gi|126178374|ref|YP_001046339.1| - 0.53 10.0 1.4 2.1 8.0 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2572) FapA PF03961.13 gi|126178374|ref|YP_001046339.1| - 0.7 8.4 4.5 1.8 7.1 0.1 2.2 2 0 0 2 2 2 0 Flagellar Assembly Protein A MinC_C PF03775.16 gi|126178374|ref|YP_001046339.1| - 0.94 9.5 3.8 1.1 9.3 0.2 2.7 2 2 0 2 2 2 0 Septum formation inhibitor MinC, C-terminal domain PhosphMutase PF10143.9 gi|126178375|ref|YP_001046340.1| - 3.9e-49 166.8 0.0 5.3e-49 166.4 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|126178375|ref|YP_001046340.1| - 1.3e-38 132.8 0.0 1.5e-38 132.6 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|126178375|ref|YP_001046340.1| - 0.00014 21.6 0.0 0.11 12.1 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Alk_phosphatase PF00245.20 gi|126178375|ref|YP_001046340.1| - 0.0025 16.8 0.0 0.0039 16.2 0.0 1.2 1 0 0 1 1 1 1 Alkaline phosphatase baeRF_family11 PF18855.1 gi|126178375|ref|YP_001046340.1| - 0.068 13.5 0.0 0.21 11.9 0.0 1.8 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 11 FTR1 PF03239.14 gi|126178376|ref|YP_001046341.1| - 0.0089 15.2 0.0 0.01 15.0 0.0 1.1 1 0 0 1 1 1 1 Iron permease FTR1 family Ribosomal_S3Ae PF01015.18 gi|126178377|ref|YP_001046342.1| - 1.2e-60 204.6 1.7 1.5e-60 204.2 1.7 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family FlgT_N PF16548.5 gi|126178377|ref|YP_001046342.1| - 0.052 14.1 0.5 0.12 12.9 0.5 1.6 1 0 0 1 1 1 0 Flagellar assembly protein T, N-terminal domain DHHA1 PF02272.19 gi|126178379|ref|YP_001046344.1| - 6.9e-15 55.7 0.3 1.4e-14 54.6 0.3 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|126178379|ref|YP_001046344.1| - 0.02 15.1 0.1 0.058 13.6 0.1 1.8 1 0 0 1 1 1 0 DHH family Ribosomal_S13_N PF08069.12 gi|126178380|ref|YP_001046345.1| - 1.1e-26 92.7 0.8 1.9e-26 91.8 0.2 1.8 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|126178380|ref|YP_001046345.1| - 2.7e-14 53.1 0.4 4.3e-14 52.5 0.4 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 V4R PF02830.18 gi|126178381|ref|YP_001046346.1| - 4.5e-17 61.8 0.3 4.5e-17 61.8 0.3 1.8 2 0 0 2 2 2 1 V4R domain HTH_20 PF12840.7 gi|126178381|ref|YP_001046346.1| - 2.4e-10 40.3 0.2 1.2e-09 38.1 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|126178381|ref|YP_001046346.1| - 7.7e-09 35.3 0.0 1.5e-08 34.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|126178381|ref|YP_001046346.1| - 8.1e-08 32.0 0.4 1.4e-07 31.2 0.4 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|126178381|ref|YP_001046346.1| - 0.00078 19.3 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|126178381|ref|YP_001046346.1| - 0.011 16.2 0.0 0.021 15.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DprA_WH PF17782.1 gi|126178381|ref|YP_001046346.1| - 0.013 15.6 0.2 0.029 14.5 0.2 1.5 1 0 0 1 1 1 0 DprA winged helix domain HTH_IclR PF09339.10 gi|126178381|ref|YP_001046346.1| - 0.023 14.5 0.1 0.046 13.5 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|126178381|ref|YP_001046346.1| - 0.038 13.6 0.0 0.067 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding RP-C PF03428.13 gi|126178381|ref|YP_001046346.1| - 0.08 12.6 0.0 0.25 11.0 0.0 1.7 2 0 0 2 2 2 0 Replication protein C N-terminal domain TrmB PF01978.19 gi|126178381|ref|YP_001046346.1| - 0.18 11.7 0.0 0.38 10.7 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.6 gi|126178381|ref|YP_001046346.1| - 0.22 12.0 0.0 0.37 11.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Flavodoxin_1 PF00258.25 gi|126178382|ref|YP_001046347.1| - 5.6e-11 42.8 0.0 8.2e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Lactamase_B PF00753.27 gi|126178382|ref|YP_001046347.1| - 2.2e-07 31.1 0.7 4.9e-07 30.0 0.7 1.7 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|126178382|ref|YP_001046347.1| - 7.1e-06 25.7 0.0 1.6e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain FMN_red PF03358.15 gi|126178382|ref|YP_001046347.1| - 0.004 16.9 0.0 0.008 15.9 0.0 1.5 1 0 0 1 1 1 1 NADPH-dependent FMN reductase PGM_PMM_II PF02879.16 gi|126178382|ref|YP_001046347.1| - 0.0086 16.7 0.0 0.036 14.7 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Flavodoxin_5 PF12724.7 gi|126178382|ref|YP_001046347.1| - 0.014 15.6 0.0 0.052 13.8 0.0 1.9 1 1 0 1 1 1 0 Flavodoxin domain PGM_PMM_I PF02878.16 gi|126178382|ref|YP_001046347.1| - 0.02 14.6 1.6 0.04 13.6 0.1 2.2 2 1 1 3 3 3 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MFS_1 PF07690.16 gi|126178383|ref|YP_001046348.1| - 2.5e-25 89.1 85.7 5.2e-20 71.7 46.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily ATG22 PF11700.8 gi|126178383|ref|YP_001046348.1| - 0.00066 18.4 0.2 0.00066 18.4 0.2 2.5 3 1 0 3 3 3 1 Vacuole effluxer Atg22 like LPG_synthase_TM PF03706.13 gi|126178384|ref|YP_001046349.1| - 1.2e-53 182.6 44.1 1.5e-53 182.3 44.1 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DUF5612 PF18462.1 gi|126178385|ref|YP_001046350.1| - 1e-70 236.1 3.8 1.5e-70 235.5 3.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5612) ACT PF01842.25 gi|126178385|ref|YP_001046350.1| - 3.8e-07 29.8 0.0 8.4e-06 25.5 0.0 2.5 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|126178385|ref|YP_001046350.1| - 0.00055 20.5 0.2 0.0018 18.8 0.2 1.9 1 1 0 1 1 1 1 ACT domain Peripla_BP_6 PF13458.6 gi|126178385|ref|YP_001046350.1| - 0.078 12.6 0.6 0.11 12.1 0.6 1.2 1 0 0 1 1 1 0 Periplasmic binding protein Sua5_yciO_yrdC PF01300.18 gi|126178386|ref|YP_001046351.1| - 9e-46 155.6 0.0 1e-45 155.4 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination NTP_transf_2 PF01909.23 gi|126178387|ref|YP_001046352.1| - 0.0031 17.8 0.0 0.0056 16.9 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain Cas_Cas4 PF01930.17 gi|126178388|ref|YP_001046353.1| - 2.2e-08 34.3 0.0 2.6e-07 30.9 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|126178388|ref|YP_001046353.1| - 0.00011 22.2 5.4 0.00055 19.9 1.0 2.3 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily RecC_C PF17946.1 gi|126178388|ref|YP_001046353.1| - 0.15 11.8 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 RecC C-terminal domain DUF3467 PF11950.8 gi|126178389|ref|YP_001046354.1| - 1.3e-16 60.6 0.0 1.6e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) MCM_lid PF17855.1 gi|126178390|ref|YP_001046355.1| - 0.0056 17.1 0.0 0.01 16.3 0.0 1.4 1 0 0 1 1 1 1 MCM AAA-lid domain Ribonuclease_3 PF00636.26 gi|126178391|ref|YP_001046356.1| - 0.004 17.8 0.0 0.012 16.3 0.0 1.8 1 1 0 1 1 1 1 Ribonuclease III domain Ribonucleas_3_3 PF14622.6 gi|126178391|ref|YP_001046356.1| - 0.0084 16.3 0.0 0.014 15.5 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease-III-like NPV_P10 PF05531.12 gi|126178391|ref|YP_001046356.1| - 0.13 12.8 0.1 0.26 11.8 0.1 1.5 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein QueC PF06508.13 gi|126178393|ref|YP_001046358.1| - 0.007 15.9 0.0 0.0083 15.6 0.0 1.1 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC DUF308 PF03729.13 gi|126178394|ref|YP_001046359.1| - 3.6e-15 56.0 56.1 1.7e-09 37.8 18.1 3.6 1 1 3 4 4 4 4 Short repeat of unknown function (DUF308) CGGC PF08821.11 gi|126178395|ref|YP_001046360.1| - 1.6e-29 102.2 0.0 1.9e-29 101.9 0.0 1.1 1 0 0 1 1 1 1 CGGC domain RibD_C PF01872.17 gi|126178396|ref|YP_001046361.1| - 1.7e-16 60.7 0.0 2.5e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 RibD C-terminal domain HD_assoc PF13286.6 gi|126178397|ref|YP_001046362.1| - 6.4e-09 36.2 0.2 1.5e-08 35.0 0.2 1.7 1 1 0 1 1 1 1 Phosphohydrolase-associated domain HD PF01966.22 gi|126178397|ref|YP_001046362.1| - 1.2e-08 35.2 0.1 2.3e-08 34.3 0.1 1.5 1 0 0 1 1 1 1 HD domain ResIII PF04851.15 gi|126178399|ref|YP_001046364.1| - 2.2e-30 105.9 0.0 4.7e-30 104.8 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF3427 PF11907.8 gi|126178399|ref|YP_001046364.1| - 8.6e-27 94.1 0.0 1.9e-26 93.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3427) PLDc_2 PF13091.6 gi|126178399|ref|YP_001046364.1| - 3.5e-12 46.3 0.1 7e-12 45.4 0.1 1.5 1 0 0 1 1 1 1 PLD-like domain Helicase_C PF00271.31 gi|126178399|ref|YP_001046364.1| - 5.4e-10 39.6 0.0 7.4e-09 35.9 0.0 2.8 3 0 0 3 3 3 1 Helicase conserved C-terminal domain SWI2_SNF2 PF18766.1 gi|126178399|ref|YP_001046364.1| - 2.6e-07 30.5 0.0 6.8e-07 29.2 0.0 1.7 1 0 0 1 1 1 1 SWI2/SNF2 ATPase RE_NgoFVII PF09565.10 gi|126178399|ref|YP_001046364.1| - 2.3e-05 23.8 0.0 3.7e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 NgoFVII restriction endonuclease DEAD PF00270.29 gi|126178399|ref|YP_001046364.1| - 0.0042 16.9 0.0 0.011 15.5 0.0 1.8 1 1 0 1 1 1 1 DEAD/DEAH box helicase HEAT_PBS PF03130.16 gi|126178399|ref|YP_001046364.1| - 0.15 12.8 0.4 3.6 8.5 0.1 3.3 3 0 0 3 3 3 0 PBS lyase HEAT-like repeat Abhydrolase_6 PF12697.7 gi|126178400|ref|YP_001046365.1| - 3.1e-08 34.5 7.3 4e-08 34.1 7.3 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|126178400|ref|YP_001046365.1| - 0.00016 21.4 0.0 0.00025 20.8 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|126178400|ref|YP_001046365.1| - 0.00046 19.5 0.0 0.0018 17.6 0.0 1.9 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Palm_thioest PF02089.15 gi|126178400|ref|YP_001046365.1| - 0.00058 19.8 0.0 0.00065 19.6 0.0 1.1 1 0 0 1 1 1 1 Palmitoyl protein thioesterase Lipase_2 PF01674.18 gi|126178400|ref|YP_001046365.1| - 0.00062 19.3 0.0 0.0011 18.6 0.0 1.5 1 1 0 1 1 1 1 Lipase (class 2) LCAT PF02450.15 gi|126178400|ref|YP_001046365.1| - 0.0068 15.6 0.0 0.01 15.1 0.0 1.2 1 0 0 1 1 1 1 Lecithin:cholesterol acyltransferase PGAP1 PF07819.13 gi|126178400|ref|YP_001046365.1| - 0.011 15.5 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein DUF900 PF05990.12 gi|126178400|ref|YP_001046365.1| - 0.02 14.4 0.0 0.028 13.9 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF900) DUF915 PF06028.11 gi|126178400|ref|YP_001046365.1| - 0.29 10.4 0.0 8.8 5.6 0.0 2.4 3 0 0 3 3 3 0 Alpha/beta hydrolase of unknown function (DUF915) Sm_multidrug_ex PF06695.11 gi|126178401|ref|YP_001046366.1| - 0.0036 17.9 6.0 0.0036 17.9 6.0 1.9 1 1 0 2 2 2 1 Putative small multi-drug export protein PALP PF00291.25 gi|126178402|ref|YP_001046367.1| - 4.9e-73 246.1 1.7 5.5e-73 245.9 1.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Urocanase PF01175.18 gi|126178402|ref|YP_001046367.1| - 0.059 13.0 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 Urocanase Rossmann-like domain FeS_assembly_P PF01883.19 gi|126178403|ref|YP_001046368.1| - 1.9e-19 69.6 2.8 3.7e-19 68.7 2.8 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Hexapep PF00132.24 gi|126178403|ref|YP_001046368.1| - 2.5e-14 52.3 12.9 5e-08 32.4 3.8 3.0 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|126178403|ref|YP_001046368.1| - 1.2e-07 31.4 17.7 0.00014 21.5 4.7 3.0 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.14 gi|126178403|ref|YP_001046368.1| - 0.0045 17.3 0.0 0.015 15.6 0.0 1.8 2 0 0 2 2 2 1 Serine acetyltransferase, N-terminal Fer4 PF00037.27 gi|126178404|ref|YP_001046369.1| - 6.2e-07 29.0 12.9 0.0001 22.0 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|126178404|ref|YP_001046369.1| - 2.1e-06 27.6 12.0 0.00035 20.5 3.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|126178404|ref|YP_001046369.1| - 1.1e-05 26.3 9.5 4.9e-05 24.2 9.5 2.0 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|126178404|ref|YP_001046369.1| - 5.9e-05 23.1 9.8 0.0062 16.6 11.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126178404|ref|YP_001046369.1| - 6.9e-05 22.7 12.2 0.0032 17.5 3.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126178404|ref|YP_001046369.1| - 0.00014 22.4 8.1 0.00031 21.3 8.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126178404|ref|YP_001046369.1| - 0.00027 21.4 4.9 0.092 13.3 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126178404|ref|YP_001046369.1| - 0.00039 20.5 9.7 0.0055 16.8 2.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126178404|ref|YP_001046369.1| - 0.0004 20.8 6.2 0.11 13.0 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126178404|ref|YP_001046369.1| - 0.0027 18.1 8.6 0.012 16.0 1.1 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|126178404|ref|YP_001046369.1| - 0.035 15.0 15.1 1.5 9.9 1.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126178404|ref|YP_001046369.1| - 0.036 14.2 13.2 0.41 10.8 13.2 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|126178404|ref|YP_001046369.1| - 0.081 13.1 8.6 1.1 9.4 1.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain zf-C2HCIx2C PF10782.9 gi|126178404|ref|YP_001046369.1| - 0.44 10.5 0.1 0.44 10.5 0.1 2.3 3 0 0 3 3 3 0 Zinc-finger Fer4_13 PF13370.6 gi|126178404|ref|YP_001046369.1| - 3.4 8.3 9.9 1.1 9.8 2.3 2.8 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I TM_helix PF05552.12 gi|126178405|ref|YP_001046370.1| - 1.3e-19 69.9 13.4 4.6e-16 58.5 1.8 3.5 4 0 0 4 4 4 2 Conserved TM helix Colicin_V PF02674.16 gi|126178405|ref|YP_001046370.1| - 0.054 13.5 0.2 0.054 13.5 0.2 3.0 2 1 1 3 3 3 0 Colicin V production protein GWT1 PF06423.12 gi|126178405|ref|YP_001046370.1| - 0.1 12.7 1.3 0.16 12.1 1.1 1.5 1 1 0 1 1 1 0 GWT1 DUF5090 PF17009.5 gi|126178405|ref|YP_001046370.1| - 5.9 6.8 10.3 12 5.8 10.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5090) MMPL PF03176.15 gi|126178406|ref|YP_001046371.1| - 2.2e-47 161.6 39.6 2.4e-26 92.5 9.9 2.9 3 0 0 3 3 3 2 MMPL family Sterol-sensing PF12349.8 gi|126178406|ref|YP_001046371.1| - 1.9e-12 47.3 20.3 1.1e-08 35.1 6.1 3.0 3 1 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|126178406|ref|YP_001046371.1| - 2.2e-11 43.5 34.2 3.1e-09 36.5 11.0 2.6 3 0 0 3 3 3 2 Protein export membrane protein ACR_tran PF00873.19 gi|126178406|ref|YP_001046371.1| - 2.9e-06 25.3 35.2 0.0019 16.0 9.4 2.7 2 1 1 3 3 3 2 AcrB/AcrD/AcrF family Patched PF02460.18 gi|126178406|ref|YP_001046371.1| - 8e-05 20.9 38.7 0.0012 17.0 17.9 2.1 2 0 0 2 2 2 2 Patched family HTH_10 PF04967.12 gi|126178408|ref|YP_001046373.1| - 1.3e-19 69.7 0.6 2.4e-19 68.9 0.6 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|126178408|ref|YP_001046373.1| - 0.00026 20.5 0.0 0.00084 18.8 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|126178408|ref|YP_001046373.1| - 0.03 14.2 0.0 0.071 13.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|126178408|ref|YP_001046373.1| - 0.036 14.0 0.0 0.087 12.7 0.0 1.7 1 0 0 1 1 1 0 MarR family DUF134 PF02001.16 gi|126178408|ref|YP_001046373.1| - 0.049 14.2 0.2 6.8 7.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF134 HTH_11 PF08279.12 gi|126178408|ref|YP_001046373.1| - 0.064 13.2 0.1 0.13 12.3 0.1 1.6 1 0 0 1 1 1 0 HTH domain Sigma70_r4 PF04545.16 gi|126178408|ref|YP_001046373.1| - 0.065 12.8 0.3 0.18 11.3 0.3 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 Phage_rep_O PF04492.13 gi|126178408|ref|YP_001046373.1| - 0.11 13.1 0.0 0.25 11.9 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage replication protein O DUF4292 PF14125.6 gi|126178408|ref|YP_001046373.1| - 0.12 12.1 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4292) TrmB PF01978.19 gi|126178409|ref|YP_001046374.1| - 4.1e-21 74.6 0.0 1e-20 73.4 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|126178409|ref|YP_001046374.1| - 0.0062 16.3 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain PadR PF03551.14 gi|126178409|ref|YP_001046374.1| - 0.021 14.8 0.0 0.13 12.3 0.0 2.1 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family Rrf2 PF02082.20 gi|126178409|ref|YP_001046374.1| - 0.044 14.1 0.0 0.089 13.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator MarR_2 PF12802.7 gi|126178409|ref|YP_001046374.1| - 0.047 13.6 0.0 0.086 12.7 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_9 PF08221.11 gi|126178409|ref|YP_001046374.1| - 0.092 12.8 0.0 0.5 10.5 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Serpin PF00079.20 gi|126178410|ref|YP_001046375.1| - 2.6e-122 408.7 0.0 2.9e-122 408.5 0.0 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) DNA_meth_N PF18284.1 gi|126178410|ref|YP_001046375.1| - 0.046 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 DNA methylase N-terminal domain GTP_EFTU_D4 PF14578.6 gi|126178411|ref|YP_001046376.1| - 2.3e-33 114.0 1.0 2.3e-33 114.0 1.0 2.7 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|126178411|ref|YP_001046376.1| - 8e-32 110.4 0.0 2.3e-31 108.8 0.0 1.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|126178411|ref|YP_001046376.1| - 3.8e-17 62.3 1.8 5.4e-17 61.8 0.3 2.0 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|126178411|ref|YP_001046376.1| - 3.9e-15 56.0 5.0 4e-09 36.7 0.1 3.0 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|126178411|ref|YP_001046376.1| - 1.7e-08 34.6 0.1 5.3e-08 32.9 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|126178411|ref|YP_001046376.1| - 0.0011 19.0 0.0 0.1 12.6 0.0 2.5 2 0 0 2 2 2 1 Dynamin family Roc PF08477.13 gi|126178411|ref|YP_001046376.1| - 0.009 16.2 0.0 0.017 15.3 0.0 1.5 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase RsgA_GTPase PF03193.16 gi|126178411|ref|YP_001046376.1| - 0.034 14.0 2.0 3.2 7.6 0.2 3.0 2 1 1 3 3 3 0 RsgA GTPase ATP_bind_1 PF03029.17 gi|126178411|ref|YP_001046376.1| - 0.063 13.1 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Ribosomal_S6e PF01092.19 gi|126178412|ref|YP_001046377.1| - 4.1e-43 146.3 0.0 4.9e-43 146.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e Radical_SAM PF04055.21 gi|126178413|ref|YP_001046378.1| - 1.4e-18 67.8 0.0 3.1e-18 66.7 0.1 1.5 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|126178413|ref|YP_001046378.1| - 0.0005 20.4 0.0 0.001 19.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|126178413|ref|YP_001046378.1| - 0.0074 16.4 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TrmO PF01980.16 gi|126178414|ref|YP_001046379.1| - 8.2e-26 90.6 0.0 1.1e-25 90.1 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O DUF2240 PF09999.9 gi|126178415|ref|YP_001046380.1| - 7.3e-52 174.8 0.2 8.3e-52 174.7 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) 5_nucleotid_C PF02872.18 gi|126178417|ref|YP_001046382.1| - 3.8e-17 62.9 0.0 9e-17 61.7 0.0 1.5 2 0 0 2 2 2 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|126178417|ref|YP_001046382.1| - 3.5e-05 24.4 0.1 0.17 12.4 0.1 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase DrsE PF02635.15 gi|126178418|ref|YP_001046383.1| - 8.7e-13 48.7 0.0 1e-12 48.4 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DUF3367 PF11847.8 gi|126178418|ref|YP_001046383.1| - 0.044 11.6 0.0 0.053 11.4 0.0 1.1 1 0 0 1 1 1 0 Alpha-(1->3)-arabinofuranosyltransferase Ribosomal_S8e PF01201.22 gi|126178419|ref|YP_001046384.1| - 1.1e-35 122.8 1.9 1.2e-35 122.6 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e cobW PF02492.19 gi|126178420|ref|YP_001046385.1| - 1.8e-21 76.6 0.0 2.3e-21 76.2 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|126178420|ref|YP_001046385.1| - 2.7e-07 29.8 0.3 0.0013 17.8 0.0 2.1 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|126178420|ref|YP_001046385.1| - 0.00054 19.9 0.0 0.0013 18.6 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.22 gi|126178420|ref|YP_001046385.1| - 0.00056 19.6 0.0 0.0011 18.6 0.0 1.7 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain TrwB_AAD_bind PF10412.9 gi|126178420|ref|YP_001046385.1| - 0.0028 16.6 0.1 0.0044 16.0 0.1 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain PduV-EutP PF10662.9 gi|126178420|ref|YP_001046385.1| - 0.0065 16.2 0.0 0.15 11.8 0.0 2.2 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.27 gi|126178420|ref|YP_001046385.1| - 0.1 12.1 0.1 11 5.4 0.0 2.3 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain SRP19 PF01922.17 gi|126178421|ref|YP_001046386.1| - 1.9e-16 60.8 0.0 2.3e-16 60.5 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein NRho PF16733.5 gi|126178421|ref|YP_001046386.1| - 0.0063 16.5 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 Rhomboid N-terminal domain KOG2701 PF09762.9 gi|126178421|ref|YP_001046386.1| - 0.16 12.2 0.0 0.2 11.9 0.0 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein (DUF2037) PHP PF02811.19 gi|126178422|ref|YP_001046387.1| - 6.9e-08 33.0 0.0 1.2e-07 32.2 0.0 1.4 1 1 0 1 1 1 1 PHP domain RNase_P_p30 PF01876.16 gi|126178422|ref|YP_001046387.1| - 1.1e-05 25.0 0.0 1.7e-05 24.4 0.0 1.5 1 1 0 1 1 1 1 RNase P subunit p30 PGA_cap PF09587.10 gi|126178422|ref|YP_001046387.1| - 0.014 14.8 0.1 0.047 13.1 0.0 1.8 2 1 1 3 3 3 0 Bacterial capsule synthesis protein PGA_cap TFIIB PF00382.19 gi|126178423|ref|YP_001046388.1| - 1.2e-43 147.0 0.9 4.2e-21 74.8 0.4 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|126178423|ref|YP_001046388.1| - 1.5e-18 66.0 0.6 1.5e-18 66.0 0.6 1.7 2 0 0 2 2 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|126178423|ref|YP_001046388.1| - 0.00058 19.3 6.7 0.0034 16.9 0.3 3.3 3 1 0 3 3 3 1 Sigma-70, region 4 RPA_interact_C PF14768.6 gi|126178423|ref|YP_001046388.1| - 0.0045 17.5 0.1 0.32 11.6 0.0 2.4 2 0 0 2 2 2 1 Replication protein A interacting C-terminal Lar_restr_allev PF14354.6 gi|126178423|ref|YP_001046388.1| - 0.0055 17.1 0.4 0.062 13.7 0.2 2.5 2 0 0 2 2 2 1 Restriction alleviation protein Lar HTH_AsnC-type PF13404.6 gi|126178423|ref|YP_001046388.1| - 0.0056 16.5 1.7 0.029 14.2 0.3 2.9 2 1 0 2 2 2 1 AsnC-type helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 gi|126178423|ref|YP_001046388.1| - 0.0068 16.3 1.0 0.015 15.2 1.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Ribosomal_S27e PF01667.17 gi|126178423|ref|YP_001046388.1| - 0.0088 15.7 0.4 0.0088 15.7 0.4 1.7 2 0 0 2 2 2 1 Ribosomal protein S27 A2L_zn_ribbon PF08792.10 gi|126178423|ref|YP_001046388.1| - 0.012 15.3 2.1 0.062 13.0 2.1 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain GFA PF04828.14 gi|126178423|ref|YP_001046388.1| - 0.017 15.5 0.3 0.057 13.8 0.1 1.9 2 0 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme HTH_31 PF13560.6 gi|126178423|ref|YP_001046388.1| - 0.017 15.4 4.0 5.1 7.5 0.1 3.8 3 0 0 3 3 3 0 Helix-turn-helix domain zf-ribbon_3 PF13248.6 gi|126178423|ref|YP_001046388.1| - 0.018 14.4 0.3 2.5 7.6 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF2318 PF10080.9 gi|126178423|ref|YP_001046388.1| - 0.03 14.5 0.6 0.1 12.8 0.2 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) DZR PF12773.7 gi|126178423|ref|YP_001046388.1| - 0.038 14.0 1.6 0.16 12.0 0.5 2.2 2 0 0 2 2 2 0 Double zinc ribbon Cyclin_C PF02984.19 gi|126178423|ref|YP_001046388.1| - 0.041 14.0 0.0 12 6.0 0.0 2.5 2 0 0 2 2 2 0 Cyclin, C-terminal domain UPF0253 PF06786.12 gi|126178423|ref|YP_001046388.1| - 0.042 14.1 0.2 0.45 10.8 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) HypA PF01155.19 gi|126178423|ref|YP_001046388.1| - 0.085 12.9 1.8 0.47 10.5 1.1 2.3 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Sigma70_r4_2 PF08281.12 gi|126178423|ref|YP_001046388.1| - 0.091 12.5 0.7 0.74 9.5 0.1 2.8 2 2 0 2 2 2 0 Sigma-70, region 4 Stc1 PF12898.7 gi|126178423|ref|YP_001046388.1| - 0.095 13.3 1.8 1.2 9.8 1.6 2.3 2 0 0 2 2 2 0 Stc1 domain LUC7 PF03194.15 gi|126178423|ref|YP_001046388.1| - 0.14 11.8 3.6 0.24 11.1 3.6 1.4 1 0 0 1 1 1 0 LUC7 N_terminus Zn_ribbon_SprT PF17283.2 gi|126178423|ref|YP_001046388.1| - 0.21 11.6 2.2 0.59 10.1 0.3 2.5 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn_Tnp_IS91 PF14319.6 gi|126178423|ref|YP_001046388.1| - 0.28 11.2 1.6 0.37 10.9 0.4 1.7 2 0 0 2 2 1 0 Transposase zinc-binding domain zf-piccolo PF05715.13 gi|126178423|ref|YP_001046388.1| - 0.31 11.2 2.0 0.53 10.5 0.5 2.0 2 0 0 2 2 2 0 Piccolo Zn-finger Elf1 PF05129.13 gi|126178423|ref|YP_001046388.1| - 0.36 10.9 3.1 0.32 11.1 0.9 1.9 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like Nudix_N_2 PF14803.6 gi|126178423|ref|YP_001046388.1| - 1.1 9.3 5.6 0.48 10.4 1.5 2.5 2 1 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|126178423|ref|YP_001046388.1| - 1.3 9.2 7.4 1.4 9.1 0.6 2.9 2 1 1 3 3 3 0 Zinc ribbon domain HTH_3 PF01381.22 gi|126178423|ref|YP_001046388.1| - 2 8.5 0.0 2 8.5 0.0 4.0 4 1 1 5 5 4 0 Helix-turn-helix Auto_anti-p27 PF06677.12 gi|126178423|ref|YP_001046388.1| - 2.1 8.6 3.8 16 5.8 2.0 2.5 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS1595 PF12760.7 gi|126178423|ref|YP_001046388.1| - 3.5 7.7 5.3 0.43 10.6 0.6 1.9 2 0 0 2 2 1 0 Transposase zinc-ribbon domain Methyltransf_11 PF08241.12 gi|126178424|ref|YP_001046389.1| - 4.5e-23 81.7 0.0 1.6e-22 79.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126178424|ref|YP_001046389.1| - 6.7e-20 71.6 0.0 2.1e-19 70.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126178424|ref|YP_001046389.1| - 2.5e-16 59.9 0.0 6.1e-16 58.6 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|126178424|ref|YP_001046389.1| - 8.2e-13 48.2 0.0 1e-12 47.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|126178424|ref|YP_001046389.1| - 2.8e-12 47.2 0.0 5.5e-12 46.3 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|126178424|ref|YP_001046389.1| - 2e-07 31.0 0.0 4e-07 30.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|126178424|ref|YP_001046389.1| - 5.7e-06 26.0 0.0 8.2e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|126178424|ref|YP_001046389.1| - 0.00061 19.4 0.0 0.0008 19.0 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_8 PF05148.15 gi|126178424|ref|YP_001046389.1| - 0.0014 18.6 0.0 0.002 18.0 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_24 PF13578.6 gi|126178424|ref|YP_001046389.1| - 0.002 19.1 0.0 0.081 14.0 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 gi|126178424|ref|YP_001046389.1| - 0.0028 17.4 0.0 0.0051 16.5 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MetW PF07021.12 gi|126178424|ref|YP_001046389.1| - 0.074 12.6 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.7 gi|126178424|ref|YP_001046389.1| - 0.078 12.9 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CotH PF08757.11 gi|126178425|ref|YP_001046390.1| - 1.1e-80 271.5 0.0 1.4e-80 271.2 0.0 1.1 1 0 0 1 1 1 1 CotH kinase protein WD40 PF00400.32 gi|126178426|ref|YP_001046391.1| - 9.6e-16 57.9 7.5 0.1 13.5 0.0 8.0 7 1 1 8 8 8 3 WD domain, G-beta repeat ANAPC4_WD40 PF12894.7 gi|126178426|ref|YP_001046391.1| - 1.1e-11 44.8 0.0 0.036 14.4 0.0 5.3 3 2 4 7 7 7 3 Anaphase-promoting complex subunit 4 WD40 domain PQQ_2 PF13360.6 gi|126178426|ref|YP_001046391.1| - 1.6e-10 41.0 16.7 4e-08 33.1 6.6 2.9 1 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|126178426|ref|YP_001046391.1| - 0.00025 21.4 38.3 0.26 11.8 2.7 8.2 7 1 1 8 8 8 3 PQQ-like domain DUF1513 PF07433.11 gi|126178426|ref|YP_001046391.1| - 0.0054 15.9 3.9 0.038 13.1 0.0 2.9 2 1 1 3 3 3 1 Protein of unknown function (DUF1513) SGL PF08450.12 gi|126178426|ref|YP_001046391.1| - 0.0091 15.6 2.1 3.8 7.0 0.4 3.4 2 1 1 4 4 4 1 SMP-30/Gluconolactonase/LRE-like region WD40_like PF17005.5 gi|126178426|ref|YP_001046391.1| - 0.042 13.2 0.0 4.4 6.5 0.0 2.7 4 0 0 4 4 4 0 WD40-like domain Mcl1_mid PF12341.8 gi|126178426|ref|YP_001046391.1| - 0.093 12.1 0.0 0.85 8.9 0.0 2.3 1 1 1 2 2 2 0 Minichromosome loss protein, Mcl1, middle region DUF4148 PF13663.6 gi|126178426|ref|YP_001046391.1| - 0.1 12.8 0.1 0.1 12.8 0.1 3.3 3 1 1 4 4 4 0 Domain of unknown function (DUF4148) DUF5122 PF17164.4 gi|126178426|ref|YP_001046391.1| - 0.76 10.1 0.0 0.76 10.1 0.0 4.5 5 0 0 5 5 5 0 Domain of unknown function (DUF5122) beta-propeller C_GCAxxG_C_C PF09719.10 gi|126178427|ref|YP_001046392.1| - 1.7e-31 109.0 0.6 2.1e-31 108.7 0.6 1.1 1 0 0 1 1 1 1 Putative redox-active protein (C_GCAxxG_C_C) Acyl_transf_3 PF01757.22 gi|126178428|ref|YP_001046393.1| - 1.2e-12 47.6 36.6 1.7e-12 47.1 36.6 1.2 1 0 0 1 1 1 1 Acyltransferase family YhfC PF10086.9 gi|126178429|ref|YP_001046394.1| - 1.4e-62 211.0 15.4 1.8e-62 210.7 15.4 1.1 1 0 0 1 1 1 1 YhfC intramembrane metalloprotease AIRS PF00586.24 gi|126178430|ref|YP_001046395.1| - 2e-19 70.0 0.9 3.4e-19 69.3 0.9 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|126178430|ref|YP_001046395.1| - 7.4e-07 29.4 0.7 6.9e-06 26.3 0.7 2.4 1 1 0 1 1 1 1 AIR synthase related protein, C-terminal domain DUF460 PF04312.13 gi|126178431|ref|YP_001046396.1| - 7.8e-48 161.8 0.0 1.6e-47 160.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|126178431|ref|YP_001046396.1| - 0.00029 21.1 3.7 0.00029 21.1 3.7 4.2 4 1 0 4 4 3 1 Actinobacteria/chloroflexi VLRF1 release factor HAUS5 PF14817.6 gi|126178431|ref|YP_001046396.1| - 0.00072 18.4 9.3 0.0012 17.7 9.3 1.3 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 5 PSK_trans_fac PF07704.11 gi|126178431|ref|YP_001046396.1| - 0.028 15.2 3.6 0.028 15.2 3.6 4.2 3 1 1 4 4 3 0 Rv0623-like transcription factor DUF641 PF04859.12 gi|126178431|ref|YP_001046396.1| - 0.034 14.5 9.1 0.94 9.8 0.9 3.1 2 1 1 3 3 3 0 Plant protein of unknown function (DUF641) TMF_DNA_bd PF12329.8 gi|126178431|ref|YP_001046396.1| - 0.18 11.8 4.3 3.9 7.5 0.1 2.8 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding SlyX PF04102.12 gi|126178431|ref|YP_001046396.1| - 0.32 11.6 7.6 3.5 8.3 1.2 3.1 1 1 1 2 2 2 0 SlyX CREPT PF16566.5 gi|126178431|ref|YP_001046396.1| - 0.36 11.0 8.9 6.4 6.9 3.1 3.3 2 1 1 3 3 3 0 Cell-cycle alteration and expression-elevated protein in tumour AAA_13 PF13166.6 gi|126178431|ref|YP_001046396.1| - 0.58 8.7 1.9 0.96 8.0 1.9 1.3 1 0 0 1 1 1 0 AAA domain Lzipper-MIP1 PF14389.6 gi|126178431|ref|YP_001046396.1| - 1.3 9.4 7.1 0.25 11.7 1.0 2.8 3 0 0 3 3 3 0 Leucine-zipper of ternary complex factor MIP1 DUF1018 PF06252.12 gi|126178431|ref|YP_001046396.1| - 1.6 9.8 8.0 15 6.6 8.0 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1018) Atg14 PF10186.9 gi|126178431|ref|YP_001046396.1| - 4.4 6.3 7.5 9.3 5.2 7.5 1.5 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4407 PF14362.6 gi|126178431|ref|YP_001046396.1| - 8 5.7 8.4 2.2 7.5 4.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) RIO1 PF01163.22 gi|126178432|ref|YP_001046397.1| - 9.9e-44 149.2 0.0 1.4e-43 148.7 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|126178432|ref|YP_001046397.1| - 3.9e-24 84.7 0.7 6.2e-24 84.0 0.7 1.3 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|126178432|ref|YP_001046397.1| - 3.1e-06 27.3 1.3 0.00011 22.2 1.3 2.6 1 1 0 1 1 1 1 Phosphotransferase enzyme family Kdo PF06293.14 gi|126178432|ref|YP_001046397.1| - 0.03 13.7 0.0 0.093 12.1 0.0 1.9 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|126178432|ref|YP_001046397.1| - 0.047 13.0 0.1 0.15 11.4 0.1 1.8 1 1 0 1 1 1 0 Protein kinase domain HTH_27 PF13463.6 gi|126178432|ref|YP_001046397.1| - 0.079 13.5 0.1 0.25 11.8 0.1 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain ATP_bind_3 PF01171.20 gi|126178433|ref|YP_001046398.1| - 1.4e-09 38.0 0.0 2.6e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 PP-loop family Asn_synthase PF00733.21 gi|126178433|ref|YP_001046398.1| - 6.3e-06 26.1 0.0 9.3e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|126178433|ref|YP_001046398.1| - 6.6e-06 25.1 0.0 8.4e-06 24.8 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|126178433|ref|YP_001046398.1| - 0.0024 17.0 0.0 0.0032 16.6 0.0 1.1 1 0 0 1 1 1 1 NAD synthase zf_UBZ PF18439.1 gi|126178433|ref|YP_001046398.1| - 0.014 15.0 0.4 0.014 15.0 0.4 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger OrfB_Zn_ribbon PF07282.11 gi|126178433|ref|YP_001046398.1| - 0.063 13.2 2.3 9.3 6.3 0.0 3.4 3 0 0 3 3 3 0 Putative transposase DNA-binding domain Hormone_2 PF00123.20 gi|126178433|ref|YP_001046398.1| - 0.097 12.6 0.0 0.26 11.2 0.0 1.8 1 0 0 1 1 1 0 Peptide hormone QueC PF06508.13 gi|126178433|ref|YP_001046398.1| - 0.11 12.0 0.0 0.38 10.2 0.0 1.9 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC GPI PF06560.11 gi|126178435|ref|YP_001046400.1| - 2.4e-42 144.3 0.2 3e-42 143.9 0.2 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.11 gi|126178435|ref|YP_001046400.1| - 0.00017 21.2 0.1 0.00037 20.2 0.1 1.5 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|126178435|ref|YP_001046400.1| - 0.0012 18.5 0.0 0.0018 17.9 0.0 1.2 1 0 0 1 1 1 1 Cupin ARD PF03079.14 gi|126178435|ref|YP_001046400.1| - 0.057 13.6 0.0 0.085 13.0 0.0 1.4 1 0 0 1 1 1 0 ARD/ARD' family NPCBM_assoc PF10633.9 gi|126178436|ref|YP_001046401.1| - 1.6e-14 53.9 5.1 4.9e-05 23.5 0.2 4.0 4 0 0 4 4 4 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|126178436|ref|YP_001046401.1| - 7.4e-13 48.6 6.5 2.7e-05 24.3 0.2 3.4 3 0 0 3 3 3 3 CARDB DUF11 PF01345.18 gi|126178436|ref|YP_001046401.1| - 0.00013 22.2 11.1 1.3 9.4 0.1 4.7 3 2 0 3 3 3 3 Domain of unknown function DUF11 MG2 PF01835.19 gi|126178436|ref|YP_001046401.1| - 0.0031 17.9 0.1 1 9.8 0.0 3.0 3 0 0 3 3 3 1 MG2 domain PHTB1_C PF14728.6 gi|126178436|ref|YP_001046401.1| - 0.024 13.7 0.0 32 3.4 0.0 3.0 3 0 0 3 3 3 0 PTHB1 C-terminus Fn3-like PF14310.6 gi|126178436|ref|YP_001046401.1| - 0.031 14.4 0.0 17 5.6 0.0 3.4 3 0 0 3 3 3 0 Fibronectin type III-like domain He_PIG PF05345.12 gi|126178436|ref|YP_001046401.1| - 0.31 11.3 6.7 1.1 9.5 0.5 3.4 3 0 0 3 3 3 0 Putative Ig domain DUF4232 PF14016.6 gi|126178436|ref|YP_001046401.1| - 2.5 8.2 9.8 7.6 6.7 0.0 4.1 2 1 1 3 3 3 0 Protein of unknown function (DUF4232) TrmB PF01978.19 gi|126178437|ref|YP_001046402.1| - 9.5e-20 70.3 0.0 1.5e-19 69.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|126178437|ref|YP_001046402.1| - 0.00092 19.3 0.0 0.0018 18.4 0.0 1.5 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_IclR PF09339.10 gi|126178437|ref|YP_001046402.1| - 0.0036 17.1 0.5 0.01 15.6 0.1 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain PadR PF03551.14 gi|126178437|ref|YP_001046402.1| - 0.016 15.1 0.0 0.039 13.9 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Penicillinase_R PF03965.16 gi|126178437|ref|YP_001046402.1| - 0.027 14.8 0.0 0.042 14.2 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor MarR PF01047.22 gi|126178437|ref|YP_001046402.1| - 0.036 14.0 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 MarR family NRD1_2 PF01995.16 gi|126178438|ref|YP_001046403.1| - 2.3e-84 282.4 0.0 2.6e-84 282.2 0.0 1.0 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 Pyr_redox_2 PF07992.14 gi|126178440|ref|YP_001046405.1| - 3.8e-49 167.5 1.8 4.8e-49 167.2 1.8 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|126178440|ref|YP_001046405.1| - 4.8e-16 59.1 3.1 2.8e-11 43.8 0.5 4.0 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|126178440|ref|YP_001046405.1| - 1.2e-15 57.5 0.0 2.1e-11 43.7 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|126178440|ref|YP_001046405.1| - 1.8e-07 30.6 8.0 0.0089 15.2 2.0 4.3 2 2 2 4 4 4 3 Glucose inhibited division protein A HI0933_like PF03486.14 gi|126178440|ref|YP_001046405.1| - 2.6e-07 29.7 0.8 9.4e-05 21.3 0.6 3.1 4 0 0 4 4 4 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|126178440|ref|YP_001046405.1| - 1.5e-06 27.5 10.2 0.0045 16.1 1.3 3.9 2 1 1 4 4 4 2 FAD binding domain NAD_binding_9 PF13454.6 gi|126178440|ref|YP_001046405.1| - 3.2e-06 27.2 1.5 0.048 13.6 0.0 3.4 3 0 0 3 3 3 2 FAD-NAD(P)-binding Pyr_redox_dim PF02852.22 gi|126178440|ref|YP_001046405.1| - 6.2e-06 26.4 0.2 2e-05 24.8 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FAD_oxidored PF12831.7 gi|126178440|ref|YP_001046405.1| - 7.1e-06 25.6 0.7 1.2e-05 24.9 0.7 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|126178440|ref|YP_001046405.1| - 1.2e-05 24.3 0.9 0.0032 16.4 0.2 2.3 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_7 PF13241.6 gi|126178440|ref|YP_001046405.1| - 2.6e-05 24.6 0.7 0.2 12.1 0.1 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding DAO PF01266.24 gi|126178440|ref|YP_001046405.1| - 4e-05 23.4 16.0 0.006 16.2 1.2 3.9 4 1 1 5 5 5 3 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|126178440|ref|YP_001046405.1| - 0.0017 17.6 0.0 0.0095 15.1 0.0 2.0 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|126178440|ref|YP_001046405.1| - 0.0022 18.2 0.3 0.0022 18.2 0.3 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|126178440|ref|YP_001046405.1| - 0.0035 17.2 2.6 0.35 10.7 0.3 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|126178440|ref|YP_001046405.1| - 0.0038 16.5 0.8 0.0038 16.5 0.8 2.5 3 0 0 3 3 3 1 FAD binding domain Amino_oxidase PF01593.24 gi|126178440|ref|YP_001046405.1| - 0.012 14.9 0.0 0.012 14.9 0.0 2.7 4 0 0 4 4 4 0 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.21 gi|126178440|ref|YP_001046405.1| - 0.032 13.5 0.9 1.6 8.0 0.1 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|126178440|ref|YP_001046405.1| - 0.043 12.9 5.4 2.3 7.2 2.1 3.1 2 2 0 2 2 2 0 Lycopene cyclase protein ApbA PF02558.16 gi|126178440|ref|YP_001046405.1| - 0.12 12.0 3.0 0.34 10.6 0.3 2.2 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA DHH PF01368.20 gi|126178441|ref|YP_001046406.1| - 6.4e-28 97.0 0.0 9.9e-28 96.3 0.0 1.3 1 0 0 1 1 1 1 DHH family DRTGG PF07085.12 gi|126178441|ref|YP_001046406.1| - 2.4e-18 65.8 0.6 4.8e-18 64.9 0.6 1.5 1 0 0 1 1 1 1 DRTGG domain DHHA2 PF02833.14 gi|126178441|ref|YP_001046406.1| - 5e-13 49.5 0.0 8.8e-13 48.6 0.0 1.4 1 0 0 1 1 1 1 DHHA2 domain CBS PF00571.28 gi|126178441|ref|YP_001046406.1| - 3.7e-09 36.9 2.4 0.00027 21.3 0.0 3.6 4 0 0 4 4 4 2 CBS domain Mal_decarbox_Al PF16957.5 gi|126178441|ref|YP_001046406.1| - 0.072 11.4 0.1 0.19 10.0 0.1 1.6 2 0 0 2 2 2 0 Malonate decarboxylase, alpha subunit, transporter CARDB PF07705.11 gi|126178442|ref|YP_001046407.1| - 2e-06 28.0 0.0 0.056 13.7 0.0 3.0 3 0 0 3 3 3 2 CARDB DUF11 PF01345.18 gi|126178442|ref|YP_001046407.1| - 5e-05 23.5 6.9 0.081 13.2 0.5 3.9 1 1 1 3 3 3 2 Domain of unknown function DUF11 ASH PF15780.5 gi|126178442|ref|YP_001046407.1| - 0.00072 19.7 0.2 0.0036 17.5 0.0 2.1 2 0 0 2 2 2 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Big_1 PF02369.16 gi|126178442|ref|YP_001046407.1| - 3.3 7.8 7.1 15 5.7 0.2 3.2 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 1) ABC_tran PF00005.27 gi|126178443|ref|YP_001046408.1| - 4.5e-34 117.9 0.0 6.1e-34 117.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126178443|ref|YP_001046408.1| - 2.8e-09 37.2 0.1 2.9e-05 24.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126178443|ref|YP_001046408.1| - 1.9e-06 27.5 0.0 5.6e-05 22.7 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|126178443|ref|YP_001046408.1| - 8.4e-05 22.2 0.0 0.00016 21.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|126178443|ref|YP_001046408.1| - 0.0013 19.1 0.0 0.0025 18.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|126178443|ref|YP_001046408.1| - 0.0025 17.7 0.0 0.0045 16.9 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|126178443|ref|YP_001046408.1| - 0.0078 16.5 0.2 0.022 15.0 0.0 1.8 2 1 1 3 3 3 1 AAA domain AAA_18 PF13238.6 gi|126178443|ref|YP_001046408.1| - 0.012 16.1 0.5 0.16 12.5 0.5 2.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|126178443|ref|YP_001046408.1| - 0.018 14.8 0.0 1.2 8.8 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|126178443|ref|YP_001046408.1| - 0.019 14.5 0.7 0.12 11.9 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|126178443|ref|YP_001046408.1| - 0.021 14.5 0.1 1.6 8.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|126178443|ref|YP_001046408.1| - 0.034 14.2 0.0 0.14 12.2 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_28 PF13521.6 gi|126178443|ref|YP_001046408.1| - 0.059 13.6 0.1 0.31 11.3 0.1 2.3 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|126178443|ref|YP_001046408.1| - 0.13 11.4 0.0 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_24 PF13479.6 gi|126178443|ref|YP_001046408.1| - 0.13 11.9 0.1 0.39 10.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|126178443|ref|YP_001046408.1| - 0.14 12.4 0.0 2.7 8.3 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Dynamin_N PF00350.23 gi|126178443|ref|YP_001046408.1| - 0.17 11.9 0.1 0.47 10.5 0.1 1.7 2 0 0 2 2 2 0 Dynamin family AAA_23 PF13476.6 gi|126178443|ref|YP_001046408.1| - 0.23 12.0 0.0 0.47 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain MacB_PCD PF12704.7 gi|126178444|ref|YP_001046409.1| - 1.6e-19 71.0 4.4 1.6e-19 71.0 4.4 2.1 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|126178444|ref|YP_001046409.1| - 3.6e-11 43.4 6.8 3.6e-11 43.4 6.8 3.0 3 0 0 3 3 3 1 FtsX-like permease family EI24 PF07264.11 gi|126178444|ref|YP_001046409.1| - 0.0029 17.9 0.8 0.0029 17.9 0.8 1.7 2 0 0 2 2 2 1 Etoposide-induced protein 2.4 (EI24) MacB_PCD PF12704.7 gi|126178445|ref|YP_001046410.1| - 5.1e-16 59.6 1.2 5.1e-16 59.6 1.2 2.3 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|126178445|ref|YP_001046410.1| - 2.7e-15 56.6 12.0 3e-13 50.1 4.2 3.1 3 0 0 3 3 3 2 FtsX-like permease family DUF3303 PF11746.8 gi|126178446|ref|YP_001046411.1| - 3.9e-06 27.0 0.0 4.4e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3303) GYD PF08734.11 gi|126178446|ref|YP_001046411.1| - 2.5e-05 24.1 0.0 2.6e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 GYD domain DUF4167 PF13763.6 gi|126178447|ref|YP_001046412.1| - 0.12 12.6 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4167) MarC PF01914.17 gi|126178448|ref|YP_001046413.1| - 3.8e-42 144.0 19.6 4.7e-42 143.7 19.6 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein PAP2 PF01569.21 gi|126178449|ref|YP_001046414.1| - 7.4e-20 71.1 5.4 7.4e-20 71.1 5.4 2.3 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|126178449|ref|YP_001046414.1| - 0.00083 19.1 16.2 0.0015 18.2 12.5 2.8 2 1 0 2 2 2 1 PAP2 superfamily Arch_flagellin PF01917.16 gi|126178450|ref|YP_001046415.1| - 0.043 14.0 0.0 0.068 13.3 0.0 1.5 2 0 0 2 2 2 0 Archaebacterial flagellin DUF2163 PF09931.9 gi|126178450|ref|YP_001046415.1| - 0.059 13.6 0.0 0.077 13.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2163) NfeD PF01957.18 gi|126178451|ref|YP_001046416.1| - 2.4e-14 53.4 3.5 2.4e-14 53.4 3.5 1.6 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding DUF4131 PF13567.6 gi|126178451|ref|YP_001046416.1| - 1.7 8.2 8.6 6.9 6.3 8.6 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Band_7 PF01145.25 gi|126178452|ref|YP_001046417.1| - 9.2e-34 117.0 3.1 1.7e-33 116.1 3.1 1.4 1 0 0 1 1 1 1 SPFH domain / Band 7 family Peptidase_M50 PF02163.22 gi|126178453|ref|YP_001046418.1| - 4.2e-23 81.9 1.3 6.7e-23 81.2 1.3 1.3 1 0 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|126178453|ref|YP_001046418.1| - 4.7e-10 39.7 0.0 7.6e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|126178453|ref|YP_001046418.1| - 3.6e-06 26.7 0.1 5.9e-06 26.0 0.1 1.4 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|126178453|ref|YP_001046418.1| - 0.076 13.4 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 PDZ domain Babuvirus_MP PF07234.11 gi|126178453|ref|YP_001046418.1| - 1.4 9.2 9.5 0.072 13.3 1.0 3.0 2 2 2 4 4 4 0 Movement and RNA silencing protein RNase_HII PF01351.18 gi|126178454|ref|YP_001046419.1| - 1.7e-38 132.4 0.0 2e-38 132.2 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII TrkA_N PF02254.18 gi|126178455|ref|YP_001046420.1| - 8.4e-26 90.5 1.8 1.5e-25 89.7 1.8 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|126178455|ref|YP_001046420.1| - 1.7e-13 50.2 3.4 2.3e-13 49.8 0.6 2.5 2 1 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.17 gi|126178455|ref|YP_001046420.1| - 4e-05 24.1 0.5 0.00018 22.1 0.2 2.3 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|126178455|ref|YP_001046420.1| - 8e-05 23.0 0.2 0.00017 22.0 0.2 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_2 PF03446.15 gi|126178455|ref|YP_001046420.1| - 0.00011 22.4 0.1 0.00063 19.9 0.1 2.0 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.6 gi|126178455|ref|YP_001046420.1| - 0.0003 20.8 0.5 0.00044 20.2 0.5 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|126178455|ref|YP_001046420.1| - 0.00054 20.2 0.0 0.0013 18.9 0.1 1.8 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|126178455|ref|YP_001046420.1| - 0.0026 17.7 0.1 0.0048 16.8 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|126178455|ref|YP_001046420.1| - 0.0045 17.5 0.0 0.0067 16.9 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain adh_short PF00106.25 gi|126178455|ref|YP_001046420.1| - 0.023 14.2 0.1 0.036 13.5 0.1 1.4 1 0 0 1 1 1 0 short chain dehydrogenase DUF3104 PF11302.8 gi|126178455|ref|YP_001046420.1| - 0.051 13.3 0.1 8.8 6.1 0.0 3.2 4 0 0 4 4 4 0 Protein of unknown function (DUF3104) LTD PF00932.19 gi|126178455|ref|YP_001046420.1| - 0.056 13.8 0.3 11 6.4 0.0 2.5 2 1 0 2 2 2 0 Lamin Tail Domain UDPG_MGDP_dh_N PF03721.14 gi|126178455|ref|YP_001046420.1| - 0.083 12.5 0.3 0.16 11.6 0.3 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|126178455|ref|YP_001046420.1| - 0.092 12.4 0.8 3.4 7.3 0.1 2.7 1 1 1 2 2 2 0 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.22 gi|126178455|ref|YP_001046420.1| - 0.11 13.3 0.1 0.26 12.1 0.1 1.7 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ID PF18543.1 gi|126178455|ref|YP_001046420.1| - 0.36 10.9 1.8 2.2 8.4 0.1 2.8 3 0 0 3 3 3 0 Intracellular delivery domain FAD_binding_3 PF01494.19 gi|126178456|ref|YP_001046421.1| - 1.7e-11 44.0 5.6 4.5e-09 36.0 5.6 2.8 1 1 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|126178456|ref|YP_001046421.1| - 1e-08 34.7 3.1 2.1e-06 27.1 1.4 2.4 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|126178456|ref|YP_001046421.1| - 1.6e-08 34.4 8.3 1.3e-07 31.4 8.3 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|126178456|ref|YP_001046421.1| - 1.9e-08 34.3 10.3 0.00027 20.6 1.2 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|126178456|ref|YP_001046421.1| - 3.7e-07 29.2 1.4 5.9e-07 28.5 1.4 1.3 1 0 0 1 1 1 1 HI0933-like protein Trp_halogenase PF04820.14 gi|126178456|ref|YP_001046421.1| - 1.1e-06 27.8 1.2 0.023 13.6 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|126178456|ref|YP_001046421.1| - 2.5e-06 26.8 2.4 0.0064 15.6 1.8 2.4 2 1 0 2 2 2 2 Lycopene cyclase protein GIDA PF01134.22 gi|126178456|ref|YP_001046421.1| - 1.1e-05 24.7 0.3 1.6e-05 24.2 0.3 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|126178456|ref|YP_001046421.1| - 2.8e-05 24.2 0.5 7.7e-05 22.9 0.5 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|126178456|ref|YP_001046421.1| - 4.4e-05 22.9 0.8 4.4e-05 22.9 0.8 1.9 2 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|126178456|ref|YP_001046421.1| - 0.00025 20.4 0.2 0.003 16.8 0.0 2.2 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|126178456|ref|YP_001046421.1| - 0.0024 17.2 0.0 0.0054 16.0 0.0 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|126178456|ref|YP_001046421.1| - 0.017 14.4 1.5 0.028 13.7 1.5 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|126178456|ref|YP_001046421.1| - 0.034 14.7 0.2 0.092 13.3 0.2 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|126178456|ref|YP_001046421.1| - 0.079 13.4 0.1 0.25 11.8 0.1 2.0 1 1 0 1 1 1 0 Putative NAD(P)-binding Fer4 PF00037.27 gi|126178457|ref|YP_001046422.1| - 2.1e-15 55.8 14.1 9e-09 34.8 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|126178457|ref|YP_001046422.1| - 1.4e-09 37.5 11.5 6.6e-05 22.8 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|126178457|ref|YP_001046422.1| - 1.7e-09 37.3 14.3 2.2e-06 27.5 2.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126178457|ref|YP_001046422.1| - 2.2e-09 37.8 9.2 0.00011 22.7 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126178457|ref|YP_001046422.1| - 1.6e-08 35.4 8.9 0.00022 22.1 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|126178457|ref|YP_001046422.1| - 2e-08 34.3 9.9 5e-08 33.0 9.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126178457|ref|YP_001046422.1| - 2.6e-08 33.9 23.0 4.2e-06 26.8 12.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126178457|ref|YP_001046422.1| - 7.6e-08 32.4 12.7 2e-06 27.8 14.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|126178457|ref|YP_001046422.1| - 8.8e-06 25.9 6.8 1e-05 25.7 6.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126178457|ref|YP_001046422.1| - 1.7e-05 25.2 7.6 0.015 15.8 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126178457|ref|YP_001046422.1| - 2.2e-05 24.6 10.9 0.016 15.7 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|126178457|ref|YP_001046422.1| - 7.7e-05 23.2 14.0 0.024 15.1 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|126178457|ref|YP_001046422.1| - 0.00018 21.9 12.3 0.038 14.4 1.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126178457|ref|YP_001046422.1| - 0.00047 20.9 17.8 0.022 15.7 4.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|126178457|ref|YP_001046422.1| - 0.012 16.4 12.6 0.025 15.3 1.3 2.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain Furin-like_2 PF15913.5 gi|126178457|ref|YP_001046422.1| - 0.013 15.7 3.2 0.92 9.7 0.2 2.0 1 1 1 2 2 2 0 Furin-like repeat, cysteine-rich Fer4_22 PF17179.4 gi|126178457|ref|YP_001046422.1| - 0.035 15.0 9.6 0.79 10.6 1.3 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|126178457|ref|YP_001046422.1| - 0.62 10.2 3.2 3.5 7.8 0.3 2.2 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Methyltransf_31 PF13847.6 gi|126178458|ref|YP_001046423.1| - 2.7e-12 46.8 0.0 2.9e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126178458|ref|YP_001046423.1| - 5.7e-11 43.0 0.1 8.8e-11 42.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126178458|ref|YP_001046423.1| - 6.4e-08 33.1 0.0 9.3e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|126178458|ref|YP_001046423.1| - 1.3e-07 31.3 0.1 1.9e-07 30.8 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|126178458|ref|YP_001046423.1| - 2.9e-07 30.4 0.2 6.1e-07 29.4 0.1 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|126178458|ref|YP_001046423.1| - 7.9e-07 28.7 0.0 1.2e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase PrmA PF06325.13 gi|126178458|ref|YP_001046423.1| - 7.1e-06 25.6 0.2 9.5e-06 25.2 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|126178458|ref|YP_001046423.1| - 9.1e-06 25.7 0.0 1.7e-05 24.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|126178458|ref|YP_001046423.1| - 5.2e-05 23.1 0.0 6.4e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Ubie_methyltran PF01209.18 gi|126178458|ref|YP_001046423.1| - 7.3e-05 22.2 0.0 8.8e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|126178458|ref|YP_001046423.1| - 0.00014 21.3 0.0 0.00018 20.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_12 PF08242.12 gi|126178458|ref|YP_001046423.1| - 0.0007 20.3 0.0 0.00086 20.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|126178458|ref|YP_001046423.1| - 0.0017 18.3 0.0 0.0025 17.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|126178458|ref|YP_001046423.1| - 0.0059 16.3 0.0 0.0088 15.7 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|126178458|ref|YP_001046423.1| - 0.0089 15.9 0.0 0.0095 15.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|126178458|ref|YP_001046423.1| - 0.046 12.7 0.0 0.052 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_24 PF13578.6 gi|126178458|ref|YP_001046423.1| - 0.056 14.5 0.1 0.087 13.8 0.1 1.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|126178458|ref|YP_001046423.1| - 0.065 12.8 0.0 0.073 12.6 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.18 gi|126178458|ref|YP_001046423.1| - 0.08 12.6 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 DNA methylase UPF0020 PF01170.18 gi|126178458|ref|YP_001046423.1| - 0.098 12.3 0.2 0.22 11.2 0.2 1.6 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_3 PF01596.17 gi|126178458|ref|YP_001046423.1| - 0.1 11.8 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_8 PF05148.15 gi|126178458|ref|YP_001046423.1| - 0.1 12.5 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase GidB PF02527.15 gi|126178458|ref|YP_001046423.1| - 0.11 11.8 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G RrnaAD PF00398.20 gi|126178458|ref|YP_001046423.1| - 0.11 11.5 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TehB PF03848.14 gi|126178458|ref|YP_001046423.1| - 0.13 11.6 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB DREV PF05219.12 gi|126178458|ref|YP_001046423.1| - 0.2 10.7 0.0 0.24 10.5 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase TP_methylase PF00590.20 gi|126178459|ref|YP_001046424.1| - 3.1e-34 118.8 0.1 1.2e-32 113.6 0.1 2.0 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 gi|126178460|ref|YP_001046425.1| - 4.5e-46 157.5 1.9 5.5e-46 157.2 1.9 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|126178460|ref|YP_001046425.1| - 0.00098 19.5 0.2 0.0031 17.9 0.2 1.9 1 1 0 1 1 1 1 Radical SAM superfamily CbiG_N PF11760.8 gi|126178461|ref|YP_001046426.1| - 2.6e-29 101.0 0.7 6.1e-29 99.9 0.1 1.9 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|126178461|ref|YP_001046426.1| - 1.4e-25 90.1 1.0 2.4e-25 89.3 1.0 1.4 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus TP_methylase PF00590.20 gi|126178462|ref|YP_001046427.1| - 7.8e-36 124.0 1.5 9.1e-36 123.8 1.5 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases ZnuA PF01297.17 gi|126178462|ref|YP_001046427.1| - 0.078 12.4 0.0 0.089 12.2 0.0 1.1 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic CbiC PF02570.15 gi|126178463|ref|YP_001046428.1| - 1.2e-58 198.0 1.3 1.4e-58 197.8 1.3 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase CbiD PF01888.17 gi|126178464|ref|YP_001046429.1| - 2.3e-45 154.9 0.0 3e-45 154.5 0.0 1.2 1 0 0 1 1 1 1 CbiD TP_methylase PF00590.20 gi|126178465|ref|YP_001046430.1| - 3.5e-18 66.3 6.6 2.4e-17 63.6 6.6 2.2 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases MTS PF05175.14 gi|126178465|ref|YP_001046430.1| - 0.091 12.3 0.1 0.17 11.4 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase small domain DUF4096 PF13340.6 gi|126178466|ref|YP_001046431.1| - 4.9e-21 74.7 0.0 6.8e-21 74.3 0.0 1.2 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) MethyltransfD12 PF02086.15 gi|126178467|ref|YP_001046432.1| - 3.1e-57 194.2 0.0 3.6e-57 194.0 0.0 1.0 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase N6_N4_Mtase PF01555.18 gi|126178468|ref|YP_001046433.1| - 1.1e-30 107.1 0.0 1.5e-30 106.7 0.0 1.2 1 0 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 gi|126178468|ref|YP_001046433.1| - 0.0073 16.0 0.0 0.032 13.9 0.0 1.9 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|126178468|ref|YP_001046433.1| - 0.016 14.8 0.0 1.6 8.3 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase small domain N6_Mtase PF02384.16 gi|126178468|ref|YP_001046433.1| - 0.026 13.8 0.0 0.46 9.7 0.0 2.1 2 0 0 2 2 2 0 N-6 DNA Methylase PAS_3 PF08447.12 gi|126178469|ref|YP_001046434.1| - 2.8e-24 85.2 0.0 5.9e-19 68.2 0.0 3.6 4 0 0 4 4 4 2 PAS fold PAS PF00989.25 gi|126178469|ref|YP_001046434.1| - 8.6e-22 77.3 0.0 8.4e-13 48.3 0.0 2.5 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|126178469|ref|YP_001046434.1| - 1.2e-18 67.7 0.0 4.2e-18 65.9 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|126178469|ref|YP_001046434.1| - 3.1e-14 53.1 0.0 5.1e-07 29.9 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|126178469|ref|YP_001046434.1| - 6.5e-14 52.1 0.3 5.4e-09 36.3 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|126178469|ref|YP_001046434.1| - 1.9e-10 40.5 0.6 2.5e-05 24.2 0.1 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|126178469|ref|YP_001046434.1| - 1.1e-05 25.4 0.1 6.4e-05 22.9 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|126178469|ref|YP_001046434.1| - 0.0037 17.1 0.0 0.014 15.3 0.0 2.0 2 0 0 2 2 2 1 GHKL domain MycE_N PF17843.1 gi|126178469|ref|YP_001046434.1| - 0.028 14.9 0.9 0.75 10.3 0.0 3.2 3 0 0 3 3 3 0 MycE methyltransferase N-terminal PAS_7 PF12860.7 gi|126178469|ref|YP_001046434.1| - 0.12 12.6 0.0 1.1 9.4 0.0 2.6 2 0 0 2 2 2 0 PAS fold dCache_1 PF02743.18 gi|126178470|ref|YP_001046435.1| - 3e-10 40.3 0.0 3.5e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 Cache domain CHASE PF03924.13 gi|126178470|ref|YP_001046435.1| - 6.5e-05 23.0 0.1 0.00013 22.0 0.1 1.5 1 0 0 1 1 1 1 CHASE domain Sm_multidrug_ex PF06695.11 gi|126178471|ref|YP_001046436.1| - 8e-18 65.2 4.6 8e-18 65.2 4.6 2.0 3 0 0 3 3 3 1 Putative small multi-drug export protein Phage_r1t_holin PF16945.5 gi|126178471|ref|YP_001046436.1| - 0.033 14.4 0.7 0.064 13.5 0.7 1.4 1 0 0 1 1 1 0 Putative lactococcus lactis phage r1t holin DUF4226 PF10774.9 gi|126178475|ref|YP_001046440.1| - 0.086 13.1 0.1 0.086 13.1 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4226) Cation_efflux PF01545.21 gi|126178476|ref|YP_001046441.1| - 8.6e-43 146.4 13.4 1e-42 146.2 13.4 1.0 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|126178476|ref|YP_001046441.1| - 1.7e-21 76.1 0.0 3e-21 75.3 0.0 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter PK PF00224.21 gi|126178477|ref|YP_001046442.1| - 3.5e-116 387.9 0.6 4.6e-116 387.5 0.6 1.0 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|126178477|ref|YP_001046442.1| - 2.4e-19 69.7 0.0 1.3e-18 67.3 0.0 2.2 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|126178477|ref|YP_001046442.1| - 3.4e-05 23.1 0.7 5.9e-05 22.3 0.7 1.4 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family T6_Ig_like PF18002.1 gi|126178477|ref|YP_001046442.1| - 0.073 12.9 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 T6 antigen Ig like domain ABC_tran PF00005.27 gi|126178478|ref|YP_001046443.1| - 3.2e-30 105.4 0.0 4.9e-30 104.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126178478|ref|YP_001046443.1| - 7.8e-19 68.6 0.1 7.6e-12 45.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126178478|ref|YP_001046443.1| - 3.3e-08 33.3 0.0 0.00024 20.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|126178478|ref|YP_001046443.1| - 1.1e-05 25.4 0.0 0.0037 17.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|126178478|ref|YP_001046443.1| - 0.00021 20.9 0.1 0.00039 20.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|126178478|ref|YP_001046443.1| - 0.0036 16.0 0.0 0.071 11.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|126178478|ref|YP_001046443.1| - 0.022 15.3 0.2 0.035 14.6 0.2 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|126178478|ref|YP_001046443.1| - 0.025 14.2 0.4 0.065 12.8 0.2 1.8 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|126178478|ref|YP_001046443.1| - 0.028 14.7 0.0 0.11 12.8 0.0 1.9 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|126178478|ref|YP_001046443.1| - 0.038 13.9 0.0 0.067 13.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|126178478|ref|YP_001046443.1| - 0.04 14.2 0.2 0.5 10.6 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|126178478|ref|YP_001046443.1| - 0.16 12.4 0.0 0.34 11.3 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|126178478|ref|YP_001046443.1| - 0.21 10.9 0.0 0.42 9.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin CbiQ PF02361.16 gi|126178479|ref|YP_001046444.1| - 8.1e-44 149.8 10.3 1.1e-43 149.4 10.3 1.1 1 0 0 1 1 1 1 Cobalt transport protein CbiN PF02553.15 gi|126178480|ref|YP_001046445.1| - 4.4e-23 81.0 2.8 6e-23 80.6 2.8 1.2 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiM PF01891.16 gi|126178481|ref|YP_001046446.1| - 1.3e-54 185.1 21.6 1.5e-54 185.0 21.6 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region ECF_trnsprt PF12822.7 gi|126178481|ref|YP_001046446.1| - 7.8e-05 22.8 24.6 7.8e-05 22.8 24.6 1.4 2 0 0 2 2 2 1 ECF transporter, substrate-specific component DUF2079 PF09852.9 gi|126178481|ref|YP_001046446.1| - 0.028 13.3 4.2 0.059 12.2 4.2 1.7 1 1 0 1 1 1 0 Predicted membrane protein (DUF2079) GATase_3 PF07685.14 gi|126178482|ref|YP_001046447.1| - 5.8e-36 123.9 0.0 8.5e-36 123.4 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|126178482|ref|YP_001046447.1| - 7e-18 65.2 0.1 1.2e-12 48.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|126178482|ref|YP_001046447.1| - 7.5e-17 61.6 0.0 1.1e-16 61.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|126178482|ref|YP_001046447.1| - 0.00082 19.3 0.0 0.003 17.5 0.0 2.0 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B DUF1611 PF07755.11 gi|126178482|ref|YP_001046447.1| - 0.013 14.8 0.2 0.025 13.9 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain NACHT PF05729.12 gi|126178482|ref|YP_001046447.1| - 0.036 14.0 0.1 0.061 13.2 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 gi|126178482|ref|YP_001046447.1| - 0.063 12.8 0.1 0.13 11.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain CTP_synth_N PF06418.14 gi|126178482|ref|YP_001046447.1| - 0.22 10.8 0.0 0.34 10.2 0.0 1.2 1 0 0 1 1 1 0 CTP synthase N-terminus Cupredoxin_1 PF13473.6 gi|126178483|ref|YP_001046448.1| - 0.0027 17.8 0.1 0.0064 16.6 0.0 1.7 1 1 1 2 2 2 1 Cupredoxin-like domain PRCC PF10253.9 gi|126178483|ref|YP_001046448.1| - 2.6 8.8 6.6 3 8.6 6.6 1.3 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting MSP1_C PF07462.11 gi|126178483|ref|YP_001046448.1| - 9.3 4.8 6.5 10 4.7 6.5 1.2 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus Aldo_ket_red PF00248.21 gi|126178484|ref|YP_001046449.1| - 5.5e-26 91.4 0.0 1.4e-21 77.0 0.0 2.0 1 1 1 2 2 2 2 Aldo/keto reductase family MFS_1 PF07690.16 gi|126178485|ref|YP_001046450.1| - 6.1e-51 173.4 62.5 1e-34 120.1 26.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|126178485|ref|YP_001046450.1| - 3.4e-14 52.5 16.0 2.1e-09 36.8 7.1 2.4 2 1 0 2 2 2 2 MFS_1 like family LacY_symp PF01306.19 gi|126178485|ref|YP_001046450.1| - 2e-07 30.2 9.0 0.0015 17.4 0.0 3.0 2 1 0 3 3 3 2 LacY proton/sugar symporter MFS_2 PF13347.6 gi|126178485|ref|YP_001046450.1| - 7.7e-06 24.7 26.7 0.00051 18.7 11.3 2.4 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_3 PF05977.13 gi|126178485|ref|YP_001046450.1| - 0.0017 16.9 22.1 0.084 11.3 22.1 2.2 1 1 0 1 1 1 1 Transmembrane secretion effector TRI12 PF06609.13 gi|126178485|ref|YP_001046450.1| - 0.0019 16.7 2.4 0.0019 16.7 2.4 2.2 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) Sugar_tr PF00083.24 gi|126178485|ref|YP_001046450.1| - 0.0052 15.7 4.1 0.0052 15.7 4.1 3.1 2 1 1 3 3 3 2 Sugar (and other) transporter Folate_carrier PF01770.18 gi|126178485|ref|YP_001046450.1| - 0.024 13.4 0.4 0.047 12.4 0.2 1.6 1 1 0 1 1 1 0 Reduced folate carrier OATP PF03137.20 gi|126178485|ref|YP_001046450.1| - 2.2 6.5 22.6 0.083 11.2 3.2 3.4 3 1 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family CPBP PF02517.16 gi|126178486|ref|YP_001046451.1| - 3.3e-10 40.2 2.8 3.3e-10 40.2 2.8 4.0 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease RelB_N PF18506.1 gi|126178487|ref|YP_001046452.1| - 0.026 14.3 6.1 0.085 12.7 0.2 2.9 2 1 1 3 3 3 0 RelB Antitoxin alpha helical domain VAPB_antitox PF02697.14 gi|126178487|ref|YP_001046452.1| - 0.028 15.2 0.1 0.039 14.7 0.1 1.5 1 1 0 1 1 1 0 Putative antitoxin TruB_N PF01509.18 gi|126178488|ref|YP_001046453.1| - 3.8e-25 89.0 0.3 2.6e-21 76.5 0.3 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|126178488|ref|YP_001046453.1| - 2.6e-20 72.3 0.1 4.1e-20 71.7 0.1 1.3 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|126178488|ref|YP_001046453.1| - 5.3e-13 48.7 2.1 5.3e-13 48.7 2.1 2.0 3 0 0 3 3 3 1 PUA domain DKCLD PF08068.12 gi|126178488|ref|YP_001046453.1| - 7.1e-05 22.8 0.1 0.00014 21.9 0.1 1.4 1 0 0 1 1 1 1 DKCLD (NUC011) domain UPF0113 PF03657.13 gi|126178488|ref|YP_001046453.1| - 0.022 15.0 0.5 0.24 11.7 0.1 2.3 2 0 0 2 2 2 0 UPF0113 PUA domain HEM4 PF02602.15 gi|126178489|ref|YP_001046454.1| - 9.7e-19 67.6 0.0 1.8e-18 66.7 0.0 1.4 1 1 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TctA PF01970.16 gi|126178490|ref|YP_001046455.1| - 9.6e-52 176.1 40.6 1.2e-51 175.8 40.6 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Nop PF01798.18 gi|126178491|ref|YP_001046456.1| - 6.8e-39 133.7 0.1 2.1e-36 125.5 0.0 2.1 2 0 0 2 2 2 2 snoRNA binding domain, fibrillarin Fibrillarin PF01269.17 gi|126178492|ref|YP_001046457.1| - 2.9e-61 206.5 0.0 3.4e-61 206.2 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin DREV PF05219.12 gi|126178492|ref|YP_001046457.1| - 0.0092 15.1 0.0 0.013 14.6 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_11 PF08241.12 gi|126178492|ref|YP_001046457.1| - 0.089 13.4 0.0 0.25 12.0 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126178492|ref|YP_001046457.1| - 0.1 13.3 0.0 0.16 12.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|126178492|ref|YP_001046457.1| - 0.16 11.8 0.0 0.44 10.4 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain DUF1614 PF07758.11 gi|126178493|ref|YP_001046458.1| - 1.5e-54 184.5 14.9 1.5e-54 184.5 14.9 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) DUF86 PF01934.17 gi|126178494|ref|YP_001046459.1| - 2.8e-23 82.0 0.0 3.8e-23 81.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF4145 PF13643.6 gi|126178494|ref|YP_001046459.1| - 0.008 16.3 0.4 0.12 12.6 0.4 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4145) TraI_2 PF07514.11 gi|126178494|ref|YP_001046459.1| - 0.074 12.0 0.0 0.091 11.7 0.0 1.1 1 0 0 1 1 1 0 Putative helicase Polbeta PF18765.1 gi|126178495|ref|YP_001046460.1| - 3.5e-15 55.9 0.0 4.5e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|126178495|ref|YP_001046460.1| - 4.5e-10 39.7 0.1 4.9e-10 39.6 0.1 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain TPR_7 PF13176.6 gi|126178495|ref|YP_001046460.1| - 0.1 12.7 0.4 0.2 11.8 0.4 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat HicA_toxin PF07927.12 gi|126178496|ref|YP_001046461.1| - 2.4e-10 40.3 0.0 2.8e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 gi|126178497|ref|YP_001046462.1| - 0.00054 20.1 0.0 0.00065 19.8 0.0 1.2 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system AP_endonuc_2 PF01261.24 gi|126178498|ref|YP_001046463.1| - 3.5e-10 39.7 0.1 9.8e-10 38.2 0.1 1.7 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Thymidylat_synt PF00303.19 gi|126178499|ref|YP_001046464.1| - 4.5e-15 55.5 0.0 4.8e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase Myosin_N PF02736.19 gi|126178499|ref|YP_001046464.1| - 0.22 11.4 1.3 0.31 10.9 0.4 1.6 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain DUF3821 PF12863.7 gi|126178500|ref|YP_001046465.1| - 3.6e-07 30.3 0.3 3.6e-07 30.3 0.3 4.2 2 2 2 4 4 4 2 Domain of unknown function (DUF3821) PGF-CTERM PF18204.1 gi|126178500|ref|YP_001046465.1| - 3.2e-06 26.9 9.0 3.2e-06 26.9 9.0 2.9 3 0 0 3 3 3 1 PGF-CTERM motif Ig_3 PF13927.6 gi|126178500|ref|YP_001046465.1| - 3.5e-05 24.3 0.2 0.0029 18.2 0.0 3.5 2 0 0 2 2 2 1 Immunoglobulin domain I-set PF07679.16 gi|126178500|ref|YP_001046465.1| - 0.021 14.9 0.8 0.24 11.5 0.0 3.2 4 0 0 4 4 4 0 Immunoglobulin I-set domain EMP24_GP25L PF01105.24 gi|126178500|ref|YP_001046465.1| - 0.29 11.1 1.1 0.77 9.7 0.4 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD PYNP_C PF07831.13 gi|126178501|ref|YP_001046466.1| - 2.2e-13 49.6 0.0 3.4e-11 42.6 0.0 2.6 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.21 gi|126178501|ref|YP_001046466.1| - 1.4e-11 44.5 1.5 2.3e-10 40.5 1.5 2.3 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|126178501|ref|YP_001046466.1| - 3.9e-09 36.2 0.0 7.3e-09 35.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain DUF2254 PF10011.9 gi|126178501|ref|YP_001046466.1| - 0.00054 18.9 0.0 0.00081 18.3 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Molydop_binding PF01568.21 gi|126178501|ref|YP_001046466.1| - 0.03 14.3 0.1 0.067 13.2 0.1 1.5 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain Biotin_lipoyl_2 PF13533.6 gi|126178501|ref|YP_001046466.1| - 0.032 14.1 0.0 0.95 9.3 0.0 3.1 3 0 0 3 3 3 0 Biotin-lipoyl like CarbopepD_reg_2 PF13715.6 gi|126178502|ref|YP_001046467.1| - 8.5e-26 89.8 3.7 1.1e-08 34.9 0.1 5.1 3 1 2 5 5 5 5 CarboxypepD_reg-like domain CarboxypepD_reg PF13620.6 gi|126178502|ref|YP_001046467.1| - 6.1e-25 87.3 14.5 4e-08 33.4 0.1 5.2 4 1 1 5 5 5 5 Carboxypeptidase regulatory-like domain PEGA PF08308.11 gi|126178502|ref|YP_001046467.1| - 1.2e-18 66.8 6.1 1.1e-05 25.2 0.0 5.6 5 0 0 5 5 5 5 PEGA domain DUF1533 PF07550.11 gi|126178502|ref|YP_001046467.1| - 2e-05 24.3 1.0 0.048 13.5 0.0 3.9 3 1 0 3 3 3 1 Protein of unknown function (DUF1533) DUF3869 PF12985.7 gi|126178502|ref|YP_001046467.1| - 7.3e-05 23.1 3.7 0.32 11.4 0.1 4.0 2 2 2 4 4 4 2 Domain of unknown function (DUF3869) DUF2846 PF11008.8 gi|126178502|ref|YP_001046467.1| - 7.5e-05 22.7 0.0 0.17 11.9 0.0 3.3 3 0 0 3 3 3 2 Protein of unknown function (DUF2846) Invasin_D3 PF09134.10 gi|126178502|ref|YP_001046467.1| - 0.00041 20.6 7.5 0.051 13.9 0.0 4.1 3 1 1 4 4 4 1 Invasin, domain 3 Big_1 PF02369.16 gi|126178502|ref|YP_001046467.1| - 0.0015 18.5 6.8 2.8 8.0 2.1 4.9 4 2 0 4 4 4 1 Bacterial Ig-like domain (group 1) LapA_dom PF06305.11 gi|126178502|ref|YP_001046467.1| - 0.017 14.9 0.1 0.055 13.3 0.1 1.8 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain fn3_3 PF14686.6 gi|126178502|ref|YP_001046467.1| - 0.065 13.0 0.1 0.33 10.8 0.0 2.2 2 0 0 2 2 2 0 Polysaccharide lyase family 4, domain II DUF2012 PF09430.10 gi|126178502|ref|YP_001046467.1| - 0.1 12.7 0.0 0.53 10.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2012) MetallophosN PF16371.5 gi|126178502|ref|YP_001046467.1| - 0.11 12.7 4.7 4.1 7.7 0.0 3.6 4 0 0 4 4 4 0 N terminal of Calcineurin-like phosphoesterase YtkA PF13115.6 gi|126178502|ref|YP_001046467.1| - 0.15 12.7 0.8 12 6.6 0.0 3.5 5 0 0 5 5 4 0 YtkA-like Trp_oprn_chp PF09534.10 gi|126178502|ref|YP_001046467.1| - 0.24 11.2 6.5 0.061 13.1 2.8 1.8 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Big_1 PF02369.16 gi|126178503|ref|YP_001046468.1| - 4.6e-14 52.2 35.7 3.6e-06 26.9 0.1 7.4 6 2 1 7 7 7 3 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|126178503|ref|YP_001046468.1| - 6.7e-13 48.8 27.9 6e-06 26.5 6.2 5.8 5 0 0 5 5 5 3 Invasin, domain 3 VWA PF00092.28 gi|126178503|ref|YP_001046468.1| - 4.5e-09 36.8 0.0 2.2e-05 24.8 0.0 3.1 3 1 0 3 3 3 2 von Willebrand factor type A domain VWA_2 PF13519.6 gi|126178503|ref|YP_001046468.1| - 4.3e-05 24.1 0.0 0.14 12.8 0.0 3.1 3 0 0 3 3 3 2 von Willebrand factor type A domain BON PF04972.17 gi|126178503|ref|YP_001046468.1| - 0.072 13.4 0.0 0.072 13.4 0.0 2.3 3 0 0 3 3 3 0 BON domain Spo0M PF07070.11 gi|126178503|ref|YP_001046468.1| - 0.11 12.1 0.1 3 7.3 0.0 2.4 2 0 0 2 2 2 0 SpoOM protein Myco_19_kDa PF05481.12 gi|126178503|ref|YP_001046468.1| - 0.92 9.8 5.3 20 5.5 0.1 3.4 2 0 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen dUTPase PF00692.19 gi|126178504|ref|YP_001046469.1| - 7.3e-20 71.0 0.0 9.4e-20 70.6 0.0 1.1 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|126178504|ref|YP_001046469.1| - 0.0003 19.7 0.1 0.0054 15.6 0.0 2.4 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) NRD1_2 PF01995.16 gi|126178505|ref|YP_001046470.1| - 6.9e-70 235.0 0.0 8.3e-70 234.7 0.0 1.1 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|126178505|ref|YP_001046470.1| - 1e-18 67.0 0.4 2.9e-18 65.6 0.3 1.8 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_11 PF08279.12 gi|126178505|ref|YP_001046470.1| - 0.13 12.2 0.0 0.38 10.7 0.0 1.8 1 1 0 1 1 1 0 HTH domain DUF3684 PF12449.8 gi|126178505|ref|YP_001046470.1| - 0.34 8.6 0.0 0.4 8.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3684) Tubulin PF00091.25 gi|126178506|ref|YP_001046471.1| - 2e-08 34.7 0.0 1e-07 32.4 0.0 2.0 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|126178506|ref|YP_001046471.1| - 0.16 11.1 0.0 0.58 9.3 0.0 1.8 2 0 0 2 2 2 0 Tubulin like Bac_luciferase PF00296.20 gi|126178507|ref|YP_001046472.1| - 3.8e-50 171.1 0.0 4.6e-50 170.8 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Aldedh PF00171.22 gi|126178509|ref|YP_001046474.1| - 2e-143 478.3 0.0 2.3e-143 478.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family TPR_16 PF13432.6 gi|126178509|ref|YP_001046474.1| - 0.22 12.2 1.1 61 4.4 0.1 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat B_solenoid_ydck PF18836.1 gi|126178511|ref|YP_001046476.1| - 0.06 13.2 9.2 16 5.6 0.2 4.0 1 1 3 5 5 5 0 Beta solenoid repeat from YDCK UPF0179 PF03684.13 gi|126178511|ref|YP_001046476.1| - 0.098 12.5 2.3 0.11 12.3 2.3 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0179) NblA PF04485.12 gi|126178511|ref|YP_001046476.1| - 0.49 10.8 5.0 90 3.6 5.0 2.8 1 1 0 1 1 1 0 Phycobilisome degradation protein nblA MTD PF01993.18 gi|126178512|ref|YP_001046477.1| - 2.1e-119 397.9 3.0 2.3e-119 397.7 3.0 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase TFX_C PF14601.6 gi|126178513|ref|YP_001046478.1| - 5.3e-33 112.8 0.0 8.4e-33 112.2 0.0 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|126178513|ref|YP_001046478.1| - 5.5e-08 32.2 0.3 9.5e-08 31.4 0.3 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|126178513|ref|YP_001046478.1| - 4.3e-06 26.2 0.1 7.1e-06 25.5 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|126178513|ref|YP_001046478.1| - 0.00071 19.2 0.0 0.0021 17.7 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HNOB PF07700.15 gi|126178513|ref|YP_001046478.1| - 0.0036 17.3 0.0 0.0047 16.9 0.0 1.1 1 0 0 1 1 1 1 Haem-NO-binding HTH_37 PF13744.6 gi|126178513|ref|YP_001046478.1| - 0.0043 17.0 0.2 0.026 14.5 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain UPF0122 PF04297.14 gi|126178513|ref|YP_001046478.1| - 0.028 14.7 0.1 0.057 13.6 0.1 1.6 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_31 PF13560.6 gi|126178513|ref|YP_001046478.1| - 0.031 14.6 0.0 0.06 13.7 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain LXG PF04740.12 gi|126178513|ref|YP_001046478.1| - 0.093 12.4 0.0 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 LXG domain of WXG superfamily MRP-L20 PF12824.7 gi|126178513|ref|YP_001046478.1| - 0.14 12.3 0.4 2.1 8.5 0.0 2.0 1 1 1 2 2 2 0 Mitochondrial ribosomal protein subunit L20 Ribosomal_L3 PF00297.22 gi|126178514|ref|YP_001046479.1| - 1e-89 301.2 1.9 1.9e-89 300.2 1.9 1.4 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|126178515|ref|YP_001046480.1| - 1.3e-42 145.7 0.2 1.5e-42 145.5 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|126178516|ref|YP_001046481.1| - 2.7e-14 53.3 1.5 1.8e-13 50.6 1.5 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 RRM_1 PF00076.22 gi|126178516|ref|YP_001046481.1| - 0.034 14.0 0.1 0.051 13.4 0.1 1.2 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Ribosomal_L2_C PF03947.18 gi|126178517|ref|YP_001046482.1| - 2.7e-41 140.7 3.1 1.2e-40 138.7 3.1 1.8 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|126178517|ref|YP_001046482.1| - 1.6e-15 56.8 0.0 7.2e-15 54.7 0.0 2.1 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|126178518|ref|YP_001046483.1| - 1.8e-25 88.6 0.0 2.4e-25 88.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L22 PF00237.19 gi|126178519|ref|YP_001046484.1| - 1.3e-26 92.8 0.2 1.7e-26 92.5 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.20 gi|126178520|ref|YP_001046485.1| - 2e-22 79.5 0.6 3.8e-22 78.6 0.6 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|126178520|ref|YP_001046485.1| - 6.5e-15 54.7 0.1 1.3e-14 53.8 0.1 1.4 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|126178520|ref|YP_001046485.1| - 0.00043 20.0 0.7 0.035 13.9 0.0 2.7 3 0 0 3 3 3 2 KH domain Ribosomal_L29 PF00831.23 gi|126178521|ref|YP_001046486.1| - 2.4e-15 56.2 2.8 2.7e-15 56.1 2.8 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein UPF0086 PF01868.16 gi|126178522|ref|YP_001046487.1| - 1.6e-24 85.6 0.0 1.8e-24 85.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.20 gi|126178523|ref|YP_001046488.1| - 1.5e-27 95.5 2.3 1.8e-27 95.2 2.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|126178523|ref|YP_001046488.1| - 0.1 13.0 0.3 0.24 11.8 0.0 1.8 2 0 0 2 2 2 0 Ribosomal_S17 N-terminal Ribosomal_L14 PF00238.19 gi|126178524|ref|YP_001046489.1| - 8.4e-34 116.3 0.2 9.5e-34 116.1 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L26 PF16906.5 gi|126178525|ref|YP_001046490.1| - 7.3e-29 100.1 0.0 8.7e-29 99.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|126178525|ref|YP_001046490.1| - 2e-06 27.5 1.5 2e-06 27.5 1.5 2.1 3 0 0 3 3 3 1 KOW motif Ribosomal_S4e PF00900.20 gi|126178526|ref|YP_001046491.1| - 4.7e-22 77.7 0.1 8.3e-22 76.9 0.1 1.3 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|126178526|ref|YP_001046491.1| - 1.5e-10 41.0 1.7 2.6e-10 40.2 1.7 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain KOW PF00467.29 gi|126178526|ref|YP_001046491.1| - 2.2e-05 24.2 0.7 2.2e-05 24.2 0.7 2.3 2 0 0 2 2 2 1 KOW motif S4 PF01479.25 gi|126178526|ref|YP_001046491.1| - 0.001 18.7 0.2 0.0044 16.7 0.0 2.0 2 0 0 2 2 2 1 S4 domain S4_2 PF13275.6 gi|126178526|ref|YP_001046491.1| - 0.068 13.0 0.2 0.33 10.8 0.0 2.0 2 0 0 2 2 2 0 S4 domain Ribosomal_L5_C PF00673.21 gi|126178527|ref|YP_001046492.1| - 8e-26 90.1 0.0 1.2e-25 89.5 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|126178527|ref|YP_001046492.1| - 1.1e-18 67.3 0.2 1.9e-18 66.5 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 gi|126178528|ref|YP_001046493.1| - 3.7e-14 52.2 5.8 4.5e-14 51.9 5.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.6 gi|126178528|ref|YP_001046493.1| - 0.0057 16.5 0.5 0.0069 16.3 0.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) zf-3CxxC_2 PF17180.4 gi|126178528|ref|YP_001046493.1| - 0.0086 16.8 1.0 0.0086 16.8 1.0 1.9 2 0 0 2 2 2 1 Zinc-binding domain C1_2 PF03107.16 gi|126178528|ref|YP_001046493.1| - 0.018 15.3 1.3 0.024 14.9 1.3 1.1 1 0 0 1 1 1 0 C1 domain MRNIP PF15749.5 gi|126178528|ref|YP_001046493.1| - 0.066 13.9 1.1 0.067 13.9 1.1 1.2 1 0 0 1 1 1 0 MRN-interacting protein zf-C2H2_4 PF13894.6 gi|126178528|ref|YP_001046493.1| - 1.7 9.7 5.5 3.9 8.6 0.7 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Ribosomal_S8 PF00410.19 gi|126178529|ref|YP_001046494.1| - 1.9e-27 95.7 0.0 2.2e-27 95.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|126178530|ref|YP_001046495.1| - 6.1e-26 90.9 3.3 1.8e-13 50.9 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 TubC_N PF18563.1 gi|126178530|ref|YP_001046495.1| - 0.093 12.7 0.1 1.1 9.3 0.0 2.6 2 1 1 3 3 3 0 TubC N-terminal docking domain Ribosomal_L32e PF01655.18 gi|126178531|ref|YP_001046496.1| - 1.9e-34 118.4 0.0 2.3e-34 118.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.20 gi|126178532|ref|YP_001046497.1| - 7.1e-55 185.0 5.9 7.9e-55 184.9 5.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e SAND PF01342.21 gi|126178532|ref|YP_001046497.1| - 0.05 13.3 0.1 0.094 12.4 0.1 1.4 1 0 0 1 1 1 0 SAND domain HTH_17 PF12728.7 gi|126178532|ref|YP_001046497.1| - 0.37 11.0 6.2 3 8.1 0.1 3.1 3 0 0 3 3 3 0 Helix-turn-helix domain Ribosomal_L5e PF17144.4 gi|126178533|ref|YP_001046498.1| - 1.7e-35 122.5 0.4 4.7e-23 82.0 0.1 2.3 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|126178533|ref|YP_001046498.1| - 0.00043 20.6 0.0 0.00058 20.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S5 PF00333.20 gi|126178534|ref|YP_001046499.1| - 2.5e-25 88.2 2.4 5.9e-25 87.0 2.4 1.7 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|126178534|ref|YP_001046499.1| - 6.1e-24 83.3 0.2 1.1e-23 82.4 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.20 gi|126178535|ref|YP_001046500.1| - 3.1e-16 59.0 0.3 5.6e-16 58.2 0.3 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|126178536|ref|YP_001046501.1| - 4.7e-19 69.3 1.1 6.3e-19 68.9 1.1 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|126178536|ref|YP_001046501.1| - 0.028 13.8 0.0 0.047 13.1 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein 60S L18 and 50S L18e SecY PF00344.20 gi|126178537|ref|YP_001046502.1| - 6.9e-72 242.3 20.0 8.6e-72 242.0 20.0 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|126178537|ref|YP_001046502.1| - 3.6e-10 39.5 1.4 1.8e-09 37.3 1.4 2.3 1 0 0 1 1 1 1 Plug domain of Sec61p DUF2673 PF10880.8 gi|126178537|ref|YP_001046502.1| - 0.11 12.7 0.3 0.11 12.7 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2673) Ninjurin PF04923.12 gi|126178537|ref|YP_001046502.1| - 5.4 7.0 7.4 27 4.8 2.2 3.0 2 1 0 2 2 2 0 Ninjurin AAA_17 PF13207.6 gi|126178538|ref|YP_001046503.1| - 1.8e-35 122.3 0.1 2.2e-35 122.1 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|126178538|ref|YP_001046503.1| - 2.7e-11 44.1 0.0 1.3e-10 41.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|126178538|ref|YP_001046503.1| - 2.7e-05 24.4 0.1 5.3e-05 23.4 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|126178538|ref|YP_001046503.1| - 2.8e-05 24.5 0.0 3.5e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|126178538|ref|YP_001046503.1| - 4.6e-05 23.4 0.8 8.1e-05 22.6 0.6 1.5 1 1 0 1 1 1 1 NTPase NACHT PF05729.12 gi|126178538|ref|YP_001046503.1| - 7e-05 22.8 0.0 8.7e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 NACHT domain Thymidylate_kin PF02223.17 gi|126178538|ref|YP_001046503.1| - 0.0001 22.1 0.6 0.011 15.4 0.6 2.6 1 1 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 gi|126178538|ref|YP_001046503.1| - 0.00013 22.3 0.5 0.00026 21.3 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|126178538|ref|YP_001046503.1| - 0.00081 19.2 0.2 0.0012 18.6 0.2 1.4 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|126178538|ref|YP_001046503.1| - 0.00085 18.9 0.1 0.0012 18.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region ATP_bind_1 PF03029.17 gi|126178538|ref|YP_001046503.1| - 0.0011 18.8 0.4 0.0078 16.0 0.4 2.0 1 1 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_19 PF13245.6 gi|126178538|ref|YP_001046503.1| - 0.0013 19.1 2.1 0.0024 18.2 2.1 1.7 1 1 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|126178538|ref|YP_001046503.1| - 0.0024 16.9 0.1 0.0039 16.2 0.1 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|126178538|ref|YP_001046503.1| - 0.0029 17.9 0.1 0.0068 16.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|126178538|ref|YP_001046503.1| - 0.0031 17.9 0.1 0.0049 17.3 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Viral_helicase1 PF01443.18 gi|126178538|ref|YP_001046503.1| - 0.0045 16.8 0.0 0.0062 16.3 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase KTI12 PF08433.10 gi|126178538|ref|YP_001046503.1| - 0.0069 15.9 0.0 0.01 15.3 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_14 PF13173.6 gi|126178538|ref|YP_001046503.1| - 0.011 15.8 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|126178538|ref|YP_001046503.1| - 0.012 15.3 0.1 0.021 14.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain CPT PF07931.12 gi|126178538|ref|YP_001046503.1| - 0.012 15.4 0.2 0.015 15.1 0.2 1.3 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein DAP3 PF10236.9 gi|126178538|ref|YP_001046503.1| - 0.014 14.6 0.0 0.02 14.1 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 ATPase_2 PF01637.18 gi|126178538|ref|YP_001046503.1| - 0.015 15.2 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_11 PF13086.6 gi|126178538|ref|YP_001046503.1| - 0.017 14.9 2.0 2.8 7.6 0.2 2.1 1 1 1 2 2 2 0 AAA domain DUF3918 PF13056.6 gi|126178538|ref|YP_001046503.1| - 0.019 14.5 0.1 0.045 13.4 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3918) DUF2075 PF09848.9 gi|126178538|ref|YP_001046503.1| - 0.026 13.8 0.2 0.034 13.4 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) cobW PF02492.19 gi|126178538|ref|YP_001046503.1| - 0.05 13.2 1.1 0.096 12.3 0.3 1.8 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|126178538|ref|YP_001046503.1| - 0.063 13.4 0.5 0.17 12.0 0.2 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.22 gi|126178538|ref|YP_001046503.1| - 0.063 12.9 0.2 0.09 12.4 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain 6PF2K PF01591.18 gi|126178538|ref|YP_001046503.1| - 0.077 12.3 0.1 0.12 11.7 0.1 1.2 1 0 0 1 1 1 0 6-phosphofructo-2-kinase NB-ARC PF00931.22 gi|126178538|ref|YP_001046503.1| - 0.082 12.1 0.1 0.12 11.6 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.14 gi|126178538|ref|YP_001046503.1| - 0.1 12.6 0.1 0.48 10.4 0.1 2.0 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) dNK PF01712.19 gi|126178538|ref|YP_001046503.1| - 0.22 11.3 0.4 16 5.3 0.0 2.4 1 1 1 3 3 3 0 Deoxynucleoside kinase EMC3_TMCO1 PF01956.16 gi|126178539|ref|YP_001046504.1| - 1.7e-46 158.1 2.2 2.2e-46 157.7 2.2 1.2 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like Proton_antipo_N PF00662.20 gi|126178539|ref|YP_001046504.1| - 0.088 12.9 3.6 0.5 10.5 3.6 2.3 1 1 0 1 1 1 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus COX16 PF14138.6 gi|126178539|ref|YP_001046504.1| - 0.1 13.1 0.4 0.21 12.1 0.4 1.5 1 0 0 1 1 1 0 Cytochrome c oxidase assembly protein COX16 Cytidylate_kin2 PF13189.6 gi|126178540|ref|YP_001046505.1| - 3.1e-23 82.8 0.1 3.5e-22 79.4 0.1 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family Cytidylate_kin PF02224.18 gi|126178540|ref|YP_001046505.1| - 1.4e-13 51.1 1.1 3.4e-06 26.9 0.2 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_18 PF13238.6 gi|126178540|ref|YP_001046505.1| - 6.7e-13 49.3 0.0 8.6e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|126178540|ref|YP_001046505.1| - 1.9e-09 38.0 0.0 2.8e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|126178540|ref|YP_001046505.1| - 2.2e-05 24.8 0.1 5e-05 23.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|126178540|ref|YP_001046505.1| - 0.00036 20.7 0.1 0.012 15.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain E3_binding PF02817.17 gi|126178540|ref|YP_001046505.1| - 0.0028 17.9 0.8 3.2 8.2 0.0 3.4 3 0 0 3 3 3 2 e3 binding domain ADK PF00406.22 gi|126178540|ref|YP_001046505.1| - 0.01 15.9 0.1 0.021 14.9 0.1 1.6 1 1 1 2 2 2 0 Adenylate kinase AAA PF00004.29 gi|126178540|ref|YP_001046505.1| - 0.016 15.6 0.0 0.023 15.1 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP-synt_D PF01813.17 gi|126178541|ref|YP_001046506.1| - 3.9e-46 157.4 2.0 4.4e-46 157.2 2.0 1.0 1 0 0 1 1 1 1 ATP synthase subunit D vATP-synt_AC39 PF01992.16 gi|126178542|ref|YP_001046507.1| - 6.5e-71 239.6 0.0 7.4e-71 239.4 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit GyrI-like PF06445.15 gi|126178543|ref|YP_001046508.1| - 6e-14 52.6 0.1 6.8e-14 52.5 0.1 1.1 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 gi|126178543|ref|YP_001046508.1| - 0.002 18.3 0.1 0.0023 18.1 0.1 1.1 1 0 0 1 1 1 1 Integron-associated effector binding protein DUF2888 PF11135.8 gi|126178543|ref|YP_001046508.1| - 0.19 11.7 0.0 0.24 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2888) Hist_deacetyl PF00850.19 gi|126178544|ref|YP_001046509.1| - 2.3e-74 250.7 0.0 2.8e-74 250.4 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain DUF3530 PF12048.8 gi|126178545|ref|YP_001046510.1| - 0.058 12.8 0.6 0.084 12.3 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3530) TrpP PF17099.5 gi|126178546|ref|YP_001046511.1| - 0.00042 20.1 16.2 0.00065 19.5 16.2 1.3 1 0 0 1 1 1 1 Tryptophan transporter TrpP ABC2_membrane PF01061.24 gi|126178546|ref|YP_001046511.1| - 5.5 6.4 16.6 2.5 7.4 5.2 2.3 1 1 1 2 2 2 0 ABC-2 type transporter ABC_tran PF00005.27 gi|126178547|ref|YP_001046512.1| - 3.3e-60 202.6 0.0 3.2e-31 108.7 0.0 2.2 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|126178547|ref|YP_001046512.1| - 4.2e-15 55.8 0.3 2e-06 27.4 0.0 3.7 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|126178547|ref|YP_001046512.1| - 9.1e-15 55.2 2.2 2.9e-05 24.1 0.0 4.2 2 2 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|126178547|ref|YP_001046512.1| - 4.3e-11 43.5 0.8 0.00024 21.5 0.2 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|126178547|ref|YP_001046512.1| - 6.5e-08 32.2 0.2 0.0083 15.9 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|126178547|ref|YP_001046512.1| - 1.9e-07 31.5 3.9 0.015 15.5 0.1 3.5 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|126178547|ref|YP_001046512.1| - 2.8e-07 31.2 0.0 0.016 15.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.15 gi|126178547|ref|YP_001046512.1| - 1.6e-06 28.1 1.9 0.0043 17.0 0.0 2.7 3 0 0 3 3 2 2 NTPase NB-ARC PF00931.22 gi|126178547|ref|YP_001046512.1| - 1.4e-05 24.4 0.1 0.091 11.9 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain AAA_30 PF13604.6 gi|126178547|ref|YP_001046512.1| - 2.2e-05 24.3 8.4 0.036 13.8 0.2 2.9 2 2 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|126178547|ref|YP_001046512.1| - 2.4e-05 23.8 2.6 0.12 11.7 0.0 3.2 4 1 0 4 4 3 2 KaiC AAA_24 PF13479.6 gi|126178547|ref|YP_001046512.1| - 4.5e-05 23.3 0.2 0.034 13.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|126178547|ref|YP_001046512.1| - 5.4e-05 23.2 0.0 0.17 11.8 0.0 2.3 2 0 0 2 2 2 2 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|126178547|ref|YP_001046512.1| - 5.5e-05 23.2 0.6 0.019 14.9 0.0 2.4 2 0 0 2 2 2 1 NACHT domain TsaE PF02367.17 gi|126178547|ref|YP_001046512.1| - 5.8e-05 23.1 0.1 0.43 10.6 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE SbcCD_C PF13558.6 gi|126178547|ref|YP_001046512.1| - 6.3e-05 23.1 0.1 0.98 9.7 0.1 3.7 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit T2SSE PF00437.20 gi|126178547|ref|YP_001046512.1| - 7.1e-05 22.0 0.6 0.0078 15.3 0.1 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_25 PF13481.6 gi|126178547|ref|YP_001046512.1| - 8.8e-05 22.2 2.4 0.14 11.8 0.1 3.5 4 0 0 4 4 3 1 AAA domain ATP_bind_1 PF03029.17 gi|126178547|ref|YP_001046512.1| - 9.1e-05 22.4 2.2 0.17 11.6 0.1 2.3 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein AAA PF00004.29 gi|126178547|ref|YP_001046512.1| - 0.00022 21.7 1.8 0.36 11.3 0.1 3.7 2 2 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|126178547|ref|YP_001046512.1| - 0.0004 19.9 0.1 0.067 12.6 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein Zeta_toxin PF06414.12 gi|126178547|ref|YP_001046512.1| - 0.00057 19.2 0.4 0.44 9.8 0.1 2.4 2 0 0 2 2 2 2 Zeta toxin RsgA_GTPase PF03193.16 gi|126178547|ref|YP_001046512.1| - 0.00063 19.7 0.2 0.83 9.5 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase AAA_18 PF13238.6 gi|126178547|ref|YP_001046512.1| - 0.00079 20.0 3.1 0.089 13.3 0.6 3.2 4 1 0 4 4 2 1 AAA domain Mg_chelatase PF01078.21 gi|126178547|ref|YP_001046512.1| - 0.001 18.5 0.2 0.34 10.3 0.0 2.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.9 gi|126178547|ref|YP_001046512.1| - 0.0012 18.5 0.2 1.7 8.4 0.1 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation TniB PF05621.11 gi|126178547|ref|YP_001046512.1| - 0.0017 17.8 0.1 1.6 8.1 0.0 3.7 4 0 0 4 4 4 1 Bacterial TniB protein DLIC PF05783.11 gi|126178547|ref|YP_001046512.1| - 0.0017 17.3 0.3 0.06 12.2 0.1 2.2 2 0 0 2 2 2 1 Dynein light intermediate chain (DLIC) AAA_5 PF07728.14 gi|126178547|ref|YP_001046512.1| - 0.0023 18.0 0.2 0.58 10.1 0.0 2.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|126178547|ref|YP_001046512.1| - 0.0024 17.9 0.1 3.4 7.7 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|126178547|ref|YP_001046512.1| - 0.0025 17.4 0.1 0.64 9.5 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region APS_kinase PF01583.20 gi|126178547|ref|YP_001046512.1| - 0.0031 17.4 0.6 0.36 10.7 0.0 2.6 3 0 0 3 3 2 1 Adenylylsulphate kinase AAA_33 PF13671.6 gi|126178547|ref|YP_001046512.1| - 0.0031 17.7 2.2 0.94 9.6 0.0 2.7 3 0 0 3 3 2 1 AAA domain cobW PF02492.19 gi|126178547|ref|YP_001046512.1| - 0.0045 16.6 4.6 1.1 8.8 0.1 2.9 3 0 0 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|126178547|ref|YP_001046512.1| - 0.0048 17.2 4.0 2.7 8.3 0.1 3.2 3 1 0 3 3 3 2 AAA domain IstB_IS21 PF01695.17 gi|126178547|ref|YP_001046512.1| - 0.0053 16.5 1.0 1.3 8.8 0.0 3.6 4 0 0 4 4 4 1 IstB-like ATP binding protein SRP54 PF00448.22 gi|126178547|ref|YP_001046512.1| - 0.0078 15.9 0.8 1 9.0 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain RNA_helicase PF00910.22 gi|126178547|ref|YP_001046512.1| - 0.0091 16.4 0.1 6.6 7.2 0.0 2.3 2 0 0 2 2 2 0 RNA helicase MeaB PF03308.16 gi|126178547|ref|YP_001046512.1| - 0.0092 15.0 1.8 0.42 9.5 0.1 2.4 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Zot PF05707.12 gi|126178547|ref|YP_001046512.1| - 0.0099 15.5 0.2 3.3 7.3 0.0 3.5 4 0 0 4 4 4 0 Zonular occludens toxin (Zot) AAA_27 PF13514.6 gi|126178547|ref|YP_001046512.1| - 0.018 14.7 0.0 2.7 7.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain RecA PF00154.21 gi|126178547|ref|YP_001046512.1| - 0.018 14.5 1.2 4.8 6.6 0.1 3.2 3 1 1 4 4 3 0 recA bacterial DNA recombination protein AAA_15 PF13175.6 gi|126178547|ref|YP_001046512.1| - 0.021 14.6 0.0 0.067 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain Roc PF08477.13 gi|126178547|ref|YP_001046512.1| - 0.024 14.8 0.2 0.6 10.3 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_28 PF13521.6 gi|126178547|ref|YP_001046512.1| - 0.028 14.7 3.7 4.6 7.5 0.0 3.2 3 0 0 3 3 3 0 AAA domain MobB PF03205.14 gi|126178547|ref|YP_001046512.1| - 0.032 14.1 0.6 0.71 9.8 0.1 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B PRK PF00485.18 gi|126178547|ref|YP_001046512.1| - 0.044 13.5 0.2 2.3 7.9 0.0 2.2 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_13 PF13166.6 gi|126178547|ref|YP_001046512.1| - 0.047 12.3 0.0 1.5 7.4 0.0 2.8 3 0 0 3 3 3 0 AAA domain PIF1 PF05970.14 gi|126178547|ref|YP_001046512.1| - 0.048 12.8 0.0 3.6 6.7 0.0 2.2 2 0 0 2 2 2 0 PIF1-like helicase Rad17 PF03215.15 gi|126178547|ref|YP_001046512.1| - 0.11 12.4 0.0 1.8 8.4 0.0 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain RuvA_C PF07499.13 gi|126178547|ref|YP_001046512.1| - 0.11 13.0 1.9 0.2 12.1 0.1 2.3 3 0 0 3 3 1 0 RuvA, C-terminal domain DEAD PF00270.29 gi|126178547|ref|YP_001046512.1| - 0.11 12.2 3.4 2.2 8.0 1.0 2.8 3 1 0 3 3 2 0 DEAD/DEAH box helicase MMR_HSR1 PF01926.23 gi|126178547|ref|YP_001046512.1| - 0.2 11.8 0.6 16 5.6 0.1 2.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.18 gi|126178547|ref|YP_001046512.1| - 0.2 11.0 1.6 12 5.2 0.0 2.9 3 0 0 3 3 3 0 FtsK/SpoIIIE family DUF2075 PF09848.9 gi|126178547|ref|YP_001046512.1| - 1.2 8.3 2.6 2.4 7.3 0.4 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ABC_ATPase PF09818.9 gi|126178547|ref|YP_001046512.1| - 6.6 5.4 6.3 42 2.7 0.1 3.2 2 1 0 3 3 3 0 Predicted ATPase of the ABC class CbiQ PF02361.16 gi|126178548|ref|YP_001046513.1| - 4.2e-27 95.2 10.0 5.1e-27 94.9 10.0 1.1 1 0 0 1 1 1 1 Cobalt transport protein AP_endonuc_2 PF01261.24 gi|126178550|ref|YP_001046515.1| - 6.2e-20 71.5 2.5 8e-20 71.2 2.5 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Peripla_BP_2 PF01497.18 gi|126178551|ref|YP_001046516.1| - 5.6e-36 124.3 0.0 6.8e-36 124.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein PGF-CTERM PF18204.1 gi|126178551|ref|YP_001046516.1| - 0.077 13.0 0.1 0.21 11.6 0.1 1.8 1 0 0 1 1 1 0 PGF-CTERM motif Peripla_BP_4 PF13407.6 gi|126178551|ref|YP_001046516.1| - 0.19 11.3 0.0 2.2 7.8 0.1 2.1 2 0 0 2 2 2 0 Periplasmic binding protein domain ABC_tran PF00005.27 gi|126178552|ref|YP_001046517.1| - 1.7e-30 106.3 0.0 2.6e-30 105.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|126178552|ref|YP_001046517.1| - 7.4e-09 35.4 0.0 1.1e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|126178552|ref|YP_001046517.1| - 2.2e-07 31.0 0.3 1.5e-05 25.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|126178552|ref|YP_001046517.1| - 0.00018 22.1 0.0 0.00027 21.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|126178552|ref|YP_001046517.1| - 0.00027 20.6 0.0 0.00058 19.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|126178552|ref|YP_001046517.1| - 0.0005 19.8 0.2 0.0065 16.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|126178552|ref|YP_001046517.1| - 0.00077 19.8 0.1 0.24 11.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|126178552|ref|YP_001046517.1| - 0.0014 19.1 0.5 0.0065 16.9 0.5 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|126178552|ref|YP_001046517.1| - 0.0022 17.8 0.0 0.0029 17.4 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|126178552|ref|YP_001046517.1| - 0.0029 16.5 0.1 0.39 9.5 0.0 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class T2SSE PF00437.20 gi|126178552|ref|YP_001046517.1| - 0.01 14.9 0.0 0.019 14.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein MeaB PF03308.16 gi|126178552|ref|YP_001046517.1| - 0.017 14.1 0.0 0.038 13.0 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 gi|126178552|ref|YP_001046517.1| - 0.022 15.2 0.0 1.2 9.6 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|126178552|ref|YP_001046517.1| - 0.033 13.8 0.0 0.056 13.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|126178552|ref|YP_001046517.1| - 0.035 14.3 0.1 0.12 12.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|126178552|ref|YP_001046517.1| - 0.036 13.8 0.0 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|126178552|ref|YP_001046517.1| - 0.036 13.7 0.0 0.061 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|126178552|ref|YP_001046517.1| - 0.039 13.1 0.1 0.099 11.8 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain Rad17 PF03215.15 gi|126178552|ref|YP_001046517.1| - 0.047 13.6 0.0 0.082 12.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain TniB PF05621.11 gi|126178552|ref|YP_001046517.1| - 0.049 13.0 0.3 1.8 7.9 0.1 2.2 2 0 0 2 2 2 0 Bacterial TniB protein SRP54 PF00448.22 gi|126178552|ref|YP_001046517.1| - 0.051 13.2 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.14 gi|126178552|ref|YP_001046517.1| - 0.052 13.4 0.1 0.11 12.4 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.6 gi|126178552|ref|YP_001046517.1| - 0.059 13.4 0.0 0.27 11.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|126178552|ref|YP_001046517.1| - 0.069 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein NACHT PF05729.12 gi|126178552|ref|YP_001046517.1| - 0.071 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 gi|126178552|ref|YP_001046517.1| - 0.073 12.4 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|126178552|ref|YP_001046517.1| - 0.081 12.9 0.0 0.44 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|126178552|ref|YP_001046517.1| - 0.085 12.4 0.0 0.21 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|126178552|ref|YP_001046517.1| - 0.11 12.9 0.1 0.77 10.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|126178552|ref|YP_001046517.1| - 0.16 11.9 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea FecCD PF01032.18 gi|126178553|ref|YP_001046518.1| - 9.6e-89 297.5 38.5 1.2e-88 297.2 38.5 1.1 1 0 0 1 1 1 1 FecCD transport family GTP_EFTU_D2 PF03144.25 gi|126178554|ref|YP_001046519.1| - 3.6e-09 36.9 0.1 6.6e-09 36.0 0.1 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|126178554|ref|YP_001046519.1| - 0.0051 16.7 0.1 0.011 15.6 0.1 1.6 1 1 0 1 1 1 1 Elongation factor Tu domain 4 MtrH PF02007.18 gi|126178555|ref|YP_001046520.1| - 1.7e-100 336.0 0.0 2.6e-100 335.4 0.0 1.2 1 1 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit MtrA PF04208.14 gi|126178556|ref|YP_001046521.1| - 6.2e-84 279.9 1.6 9.7e-84 279.3 1.6 1.3 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrG PF04210.13 gi|126178556|ref|YP_001046521.1| - 3.2e-23 81.3 3.0 4.1e-23 81.0 1.0 2.0 2 0 0 2 2 2 1 Tetrahydromethanopterin S-methyltransferase, subunit G DUF5383 PF17355.2 gi|126178556|ref|YP_001046521.1| - 0.11 12.9 0.2 0.17 12.3 0.2 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5383) Sugarporin_N PF11471.8 gi|126178556|ref|YP_001046521.1| - 0.19 11.7 0.2 0.35 10.9 0.2 1.4 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension MtrF PF09472.10 gi|126178557|ref|YP_001046522.1| - 1.3e-24 85.4 3.0 1.4e-24 85.2 3.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrA PF04208.14 gi|126178558|ref|YP_001046523.1| - 7.2e-84 279.7 1.7 9.3e-84 279.3 1.7 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.10 gi|126178558|ref|YP_001046523.1| - 0.0054 16.1 3.9 0.0054 16.1 3.9 2.4 2 1 0 2 2 2 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrB PF05440.12 gi|126178559|ref|YP_001046524.1| - 1.3e-31 108.8 0.4 1.5e-31 108.6 0.4 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B GWT1 PF06423.12 gi|126178559|ref|YP_001046524.1| - 0.087 12.9 0.1 0.12 12.4 0.1 1.2 1 0 0 1 1 1 0 GWT1 MtrC PF04211.13 gi|126178560|ref|YP_001046525.1| - 5.7e-72 242.0 34.8 1.2e-71 240.9 34.8 1.4 1 1 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C Vpu PF00558.19 gi|126178560|ref|YP_001046525.1| - 2.7 7.8 7.1 0.6 9.9 0.9 2.8 2 0 0 2 2 2 0 Vpu protein MtrD PF04207.12 gi|126178561|ref|YP_001046526.1| - 8.3e-91 303.5 24.8 1.2e-90 303.0 24.8 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D Ost5 PF05251.12 gi|126178561|ref|YP_001046526.1| - 0.0016 18.7 4.1 0.0016 18.7 4.1 3.2 3 1 0 3 3 3 1 Oligosaccharyltransferase subunit 5 MtrE PF04206.12 gi|126178562|ref|YP_001046527.1| - 1.4e-127 424.6 11.0 1.6e-127 424.4 11.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E MCR_alpha_N PF02745.15 gi|126178563|ref|YP_001046528.1| - 1.1e-151 503.7 0.1 1.6e-151 503.2 0.1 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|126178563|ref|YP_001046528.1| - 1.2e-66 222.9 2.1 2.7e-66 221.8 2.1 1.7 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain BofC_C PF08955.10 gi|126178563|ref|YP_001046528.1| - 0.066 13.3 0.0 6.9 6.8 0.0 2.5 2 0 0 2 2 2 0 BofC C-terminal domain MCR_beta_N PF02783.15 gi|126178563|ref|YP_001046528.1| - 0.16 11.6 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_gamma PF02240.16 gi|126178564|ref|YP_001046529.1| - 1.9e-132 440.0 0.1 2.1e-132 439.8 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_C PF04609.12 gi|126178565|ref|YP_001046530.1| - 5.8e-07 28.9 1.1 2.2e-06 27.0 1.1 1.9 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MCR_D PF02505.14 gi|126178566|ref|YP_001046531.1| - 6.2e-55 185.0 0.0 7.6e-55 184.7 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.18 gi|126178567|ref|YP_001046532.1| - 7.9e-137 454.8 6.7 1.1e-136 454.3 6.7 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|126178567|ref|YP_001046532.1| - 1.3e-79 266.1 0.6 1.9e-79 265.5 0.6 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain LPD14 PF18827.1 gi|126178567|ref|YP_001046532.1| - 0.066 13.5 1.0 0.32 11.2 0.1 2.3 2 0 0 2 2 2 0 Large polyvalent protein-associated domain 14 GXGXG PF01493.19 gi|126178568|ref|YP_001046533.1| - 8.1e-11 41.9 24.3 1.8e-10 40.7 19.8 2.1 1 1 1 2 2 2 2 GXGXG motif Amidohydro_3 PF07969.11 gi|126178569|ref|YP_001046534.1| - 5.2e-76 257.0 0.8 6.1e-76 256.8 0.8 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|126178569|ref|YP_001046534.1| - 3.6e-07 29.8 0.0 4.1e-05 23.1 0.0 2.6 1 1 0 1 1 1 1 Amidohydrolase family Molybdopterin PF00384.22 gi|126178570|ref|YP_001046535.1| - 4.8e-15 55.4 0.0 9.9e-15 54.4 0.0 1.6 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|126178571|ref|YP_001046536.1| - 2.3e-16 59.8 0.0 2.8e-16 59.5 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain FlpD PF02662.16 gi|126178572|ref|YP_001046537.1| - 1.1e-49 167.6 0.0 1.2e-49 167.4 0.0 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.27 gi|126178573|ref|YP_001046538.1| - 5.4e-17 60.8 39.9 9.5e-06 25.2 1.5 4.6 4 0 0 4 4 4 4 4Fe-4S binding domain Pyr_redox_2 PF07992.14 gi|126178573|ref|YP_001046538.1| - 1.3e-16 60.7 0.2 2e-15 56.8 0.2 2.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_9 PF13187.6 gi|126178573|ref|YP_001046538.1| - 3.6e-14 52.7 23.6 2.5e-07 30.7 8.8 3.5 3 1 0 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126178573|ref|YP_001046538.1| - 4.7e-13 49.0 34.8 2.8e-09 37.0 8.2 4.3 5 0 0 5 5 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126178573|ref|YP_001046538.1| - 3.7e-12 46.7 32.3 3.2e-07 30.8 10.0 3.5 3 1 2 5 5 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126178573|ref|YP_001046538.1| - 1.2e-10 42.2 19.9 0.019 15.9 0.1 4.7 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|126178573|ref|YP_001046538.1| - 3.4e-10 39.6 35.5 0.00074 19.5 2.2 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.6 gi|126178573|ref|YP_001046538.1| - 5.5e-09 36.3 20.8 0.017 15.6 0.2 4.1 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126178573|ref|YP_001046538.1| - 1.8e-08 34.4 33.6 0.0013 18.8 12.9 4.0 2 2 1 3 3 3 3 4Fe-4S dicluster domain FAD_oxidored PF12831.7 gi|126178573|ref|YP_001046538.1| - 6.3e-08 32.4 0.1 1.6e-07 31.1 0.1 1.6 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_2 PF12797.7 gi|126178573|ref|YP_001046538.1| - 1.6e-06 27.9 45.9 0.026 14.6 3.0 5.0 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_17 PF13534.6 gi|126178573|ref|YP_001046538.1| - 5.8e-06 26.8 2.8 5.8e-06 26.8 2.8 4.2 4 1 2 6 6 4 2 4Fe-4S dicluster domain NAD_binding_8 PF13450.6 gi|126178573|ref|YP_001046538.1| - 1.6e-05 25.0 0.0 1.6e-05 25.0 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|126178573|ref|YP_001046538.1| - 1.7e-05 24.1 0.4 3e-05 23.3 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|126178573|ref|YP_001046538.1| - 9.3e-05 21.7 0.1 0.00018 20.8 0.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|126178573|ref|YP_001046538.1| - 0.00015 22.3 0.6 0.00015 22.3 0.6 2.9 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_22 PF17179.4 gi|126178573|ref|YP_001046538.1| - 0.00022 22.0 21.7 0.9 10.4 0.4 4.7 4 0 0 4 4 4 3 4Fe-4S dicluster domain DAO PF01266.24 gi|126178573|ref|YP_001046538.1| - 0.00054 19.6 1.3 0.016 14.8 0.2 3.1 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|126178573|ref|YP_001046538.1| - 0.0039 16.5 1.0 0.01 15.1 0.5 1.9 1 1 1 2 2 2 1 FAD binding domain Fer4_4 PF12800.7 gi|126178573|ref|YP_001046538.1| - 0.0059 17.0 1.6 0.0059 17.0 1.6 5.5 6 0 0 6 6 4 4 4Fe-4S binding domain AlaDh_PNT_C PF01262.21 gi|126178573|ref|YP_001046538.1| - 0.018 14.4 0.0 0.043 13.1 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|126178573|ref|YP_001046538.1| - 0.018 13.7 1.4 0.032 13.0 1.4 1.4 1 0 0 1 1 1 0 HI0933-like protein Fer4_13 PF13370.6 gi|126178573|ref|YP_001046538.1| - 0.021 15.3 29.3 2.4 8.8 1.5 5.4 5 0 0 5 5 5 0 4Fe-4S single cluster domain of Ferredoxin I Thi4 PF01946.17 gi|126178573|ref|YP_001046538.1| - 0.027 13.7 0.0 0.058 12.6 0.0 1.5 1 0 0 1 1 1 0 Thi4 family Pyr_redox_3 PF13738.6 gi|126178573|ref|YP_001046538.1| - 0.027 13.7 1.0 0.1 11.8 0.4 2.1 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|126178573|ref|YP_001046538.1| - 0.082 11.9 0.0 8 5.4 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein Amino_oxidase PF01593.24 gi|126178573|ref|YP_001046538.1| - 0.084 12.1 0.0 0.25 10.6 0.0 1.7 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Fer4_15 PF13459.6 gi|126178573|ref|YP_001046538.1| - 0.29 11.9 27.4 0.35 11.7 0.6 4.8 3 1 1 4 4 4 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|126178573|ref|YP_001046538.1| - 3.3 7.9 23.7 3.5 7.9 0.1 4.6 4 1 1 5 5 5 0 4Fe-4S dicluster domain CCG PF02754.16 gi|126178574|ref|YP_001046539.1| - 2.8e-31 107.6 0.5 1.4e-17 63.7 0.2 2.2 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|126178575|ref|YP_001046540.1| - 3.8e-10 40.1 4.8 7.4e-10 39.1 4.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126178575|ref|YP_001046540.1| - 5.3e-09 36.5 14.9 2.6e-08 34.3 5.3 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126178575|ref|YP_001046540.1| - 1.5e-08 34.6 7.2 6.6e-08 32.6 7.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126178575|ref|YP_001046540.1| - 2.9e-06 27.3 18.2 3.5e-05 23.8 9.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126178575|ref|YP_001046540.1| - 0.00069 20.2 11.7 0.015 15.9 12.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126178575|ref|YP_001046540.1| - 0.00076 19.8 10.1 0.19 12.3 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|126178575|ref|YP_001046540.1| - 0.0012 19.7 8.9 0.21 12.6 0.3 2.6 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|126178575|ref|YP_001046540.1| - 0.0062 16.6 13.8 0.35 11.1 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|126178575|ref|YP_001046540.1| - 0.053 13.4 13.6 0.25 11.2 1.0 2.7 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126178575|ref|YP_001046540.1| - 0.16 12.1 8.7 0.75 10.0 8.7 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|126178575|ref|YP_001046540.1| - 0.24 11.6 4.1 2.1 8.6 0.2 2.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126178575|ref|YP_001046540.1| - 1.2 10.3 15.9 1.4 10.0 3.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|126178575|ref|YP_001046540.1| - 6.1 7.8 11.1 14 6.6 3.9 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|126178576|ref|YP_001046541.1| - 1.6e-43 144.8 91.8 1.7e-07 30.7 3.7 8.7 8 1 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126178576|ref|YP_001046541.1| - 1e-32 112.5 69.7 1.8e-11 44.4 9.1 5.3 3 2 4 7 7 7 7 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126178576|ref|YP_001046541.1| - 1.2e-30 105.3 64.5 1.1e-09 38.2 8.2 5.9 5 1 1 6 6 6 6 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126178576|ref|YP_001046541.1| - 9e-28 96.2 66.6 5.7e-08 32.8 7.4 5.7 3 2 4 7 7 7 7 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126178576|ref|YP_001046541.1| - 1.5e-26 93.1 63.1 9.9e-06 26.4 8.8 7.2 5 2 2 7 7 7 7 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|126178576|ref|YP_001046541.1| - 6.7e-25 86.1 88.0 4e-05 23.5 3.2 8.2 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126178576|ref|YP_001046541.1| - 1.5e-24 85.9 65.7 7.2e-05 22.8 10.4 6.8 6 1 1 7 7 7 7 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126178576|ref|YP_001046541.1| - 4.1e-23 80.0 82.9 1.7e-05 24.6 2.9 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_8 PF13183.6 gi|126178576|ref|YP_001046541.1| - 2.4e-13 50.3 64.9 0.00018 21.9 7.9 6.4 4 2 2 7 7 7 6 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126178576|ref|YP_001046541.1| - 1.2e-12 48.2 63.6 0.005 17.4 0.3 6.6 3 2 3 6 6 6 6 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|126178576|ref|YP_001046541.1| - 5.1e-09 36.7 58.1 0.07 13.9 0.1 8.4 7 1 1 8 8 8 6 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|126178576|ref|YP_001046541.1| - 5e-07 30.2 100.9 0.0077 17.1 4.2 8.4 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_4 PF12800.7 gi|126178576|ref|YP_001046541.1| - 1e-05 25.7 8.7 0.00063 20.1 1.4 8.1 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_13 PF13370.6 gi|126178576|ref|YP_001046541.1| - 0.00054 20.4 86.3 0.14 12.7 3.6 8.4 8 0 0 8 8 8 5 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|126178576|ref|YP_001046541.1| - 0.031 15.1 0.2 0.031 15.1 0.2 8.1 7 1 2 9 9 9 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|126178577|ref|YP_001046542.1| - 5.4e-18 64.0 12.2 2.7e-09 36.4 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126178577|ref|YP_001046542.1| - 3.7e-14 52.6 18.1 2.9e-11 43.3 9.3 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126178577|ref|YP_001046542.1| - 1.1e-13 50.6 12.3 6.9e-07 29.1 3.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|126178577|ref|YP_001046542.1| - 1.5e-13 51.4 16.3 8e-10 39.5 8.7 1.9 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|126178577|ref|YP_001046542.1| - 2.2e-13 50.6 8.3 3.7e-13 49.8 8.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126178577|ref|YP_001046542.1| - 2.3e-12 46.2 11.8 6.3e-06 26.0 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126178577|ref|YP_001046542.1| - 3.1e-11 43.3 6.8 5.4e-11 42.5 6.8 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126178577|ref|YP_001046542.1| - 4.1e-09 36.8 19.8 9.6e-08 32.5 8.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126178577|ref|YP_001046542.1| - 8.9e-09 35.4 12.7 3e-07 30.5 12.8 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126178577|ref|YP_001046542.1| - 1.2e-08 34.8 11.5 0.00047 20.5 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|126178577|ref|YP_001046542.1| - 2.2e-06 28.4 5.0 0.0047 17.7 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126178577|ref|YP_001046542.1| - 3.8e-06 27.3 11.0 4.6e-05 23.8 11.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126178577|ref|YP_001046542.1| - 1.3e-05 25.8 23.0 0.0032 18.3 7.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|126178577|ref|YP_001046542.1| - 0.00017 22.3 12.4 0.019 15.7 2.3 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|126178577|ref|YP_001046542.1| - 0.0027 18.2 14.5 0.1 13.1 3.5 2.4 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|126178577|ref|YP_001046542.1| - 0.11 12.7 12.7 0.28 11.4 1.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|126178577|ref|YP_001046542.1| - 0.16 12.1 3.9 5.7 7.1 0.1 2.1 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_19 PF06902.11 gi|126178577|ref|YP_001046542.1| - 0.17 12.0 0.8 0.17 12.0 0.8 2.7 2 2 0 2 2 2 0 Divergent 4Fe-4S mono-cluster FTR_C PF02741.15 gi|126178578|ref|YP_001046543.1| - 1.1e-67 226.7 1.7 1.9e-67 225.9 1.7 1.4 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.18 gi|126178578|ref|YP_001046543.1| - 9.2e-60 200.7 0.1 1.6e-59 199.9 0.1 1.4 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase DUF1743 PF08489.11 gi|126178579|ref|YP_001046544.1| - 2.5e-06 27.5 0.3 0.00035 20.6 0.0 2.8 2 1 0 2 2 2 1 Domain of unknown function (DUF1743) DUF1743 PF08489.11 gi|126178580|ref|YP_001046545.1| - 3.7e-10 39.9 0.1 5.1e-07 29.8 0.0 3.3 2 1 0 2 2 2 2 Domain of unknown function (DUF1743) Radical_SAM PF04055.21 gi|126178581|ref|YP_001046546.1| - 2e-13 51.1 0.0 2.7e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily HTH_IclR PF09339.10 gi|126178581|ref|YP_001046546.1| - 0.1 12.4 0.1 0.2 11.5 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TPP_enzyme_C PF02775.21 gi|126178582|ref|YP_001046547.1| - 1.1e-08 35.1 0.1 2.1e-08 34.1 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|126178582|ref|YP_001046547.1| - 0.00083 19.0 5.8 0.059 13.0 2.8 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Trm56 PF01994.16 gi|126178582|ref|YP_001046547.1| - 0.025 14.5 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 tRNA ribose 2'-O-methyltransferase, aTrm56 HMGL-like PF00682.19 gi|126178583|ref|YP_001046548.1| - 1.2e-79 267.6 2.0 1.7e-79 267.1 2.0 1.2 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.24 gi|126178583|ref|YP_001046548.1| - 0.016 14.6 0.1 0.039 13.4 0.1 1.6 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Aconitase PF00330.20 gi|126178584|ref|YP_001046549.1| - 3.8e-84 283.3 11.0 1.7e-81 274.6 11.0 2.8 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|126178584|ref|YP_001046549.1| - 0.016 13.9 0.0 0.024 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Aconitase_C PF00694.19 gi|126178585|ref|YP_001046550.1| - 8.1e-17 61.8 0.0 1e-16 61.5 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain PepSY_like PF11396.8 gi|126178585|ref|YP_001046550.1| - 0.013 16.0 0.0 0.022 15.3 0.0 1.3 1 0 0 1 1 1 0 Putative beta-lactamase-inhibitor-like, PepSY-like Iso_dh PF00180.20 gi|126178587|ref|YP_001046552.1| - 1.3e-88 297.5 0.0 9.8e-88 294.6 0.0 1.8 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase AP_endonuc_2 PF01261.24 gi|126178588|ref|YP_001046553.1| - 3.4e-33 114.9 0.3 4.1e-33 114.6 0.3 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PKD PF00801.20 gi|126178589|ref|YP_001046554.1| - 2e-16 59.6 15.5 7e-09 35.4 2.3 3.4 3 0 0 3 3 3 2 PKD domain PD40 PF07676.12 gi|126178589|ref|YP_001046554.1| - 0.0012 18.8 6.3 3.1 7.8 0.1 4.8 4 0 0 4 4 4 2 WD40-like Beta Propeller Repeat PKD_3 PF16820.5 gi|126178589|ref|YP_001046554.1| - 0.2 11.4 1.2 40 4.1 0.0 3.4 3 0 0 3 3 3 0 PKD-like domain SUKH_6 PF14568.6 gi|126178589|ref|YP_001046554.1| - 0.25 11.8 0.5 1.5e+02 2.8 0.1 4.0 4 0 0 4 4 4 0 SMI1-KNR4 cell-wall DUF1654 PF07867.11 gi|126178590|ref|YP_001046555.1| - 0.11 12.2 0.1 16 5.3 0.0 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1654) DUF2064 PF09837.9 gi|126178590|ref|YP_001046555.1| - 1.7 8.4 8.0 27 4.6 0.0 4.2 4 0 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2064) tRNA_int_endo PF01974.17 gi|126178591|ref|YP_001046556.1| - 1.3e-47 159.8 2.6 4.7e-25 87.5 0.2 2.2 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|126178591|ref|YP_001046556.1| - 6.3e-28 96.2 0.3 4.7e-13 48.6 0.0 2.7 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|126178591|ref|YP_001046556.1| - 7.3e-09 35.7 0.7 0.00014 22.0 0.1 2.6 2 0 0 2 2 2 2 tRNA-splicing endonuclease subunit sen54 N-term DUF5624 PF18538.1 gi|126178591|ref|YP_001046556.1| - 0.077 13.1 0.0 0.22 11.6 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF5624) tRNA-synt_1b PF00579.25 gi|126178592|ref|YP_001046557.1| - 4.8e-28 98.3 0.0 1.4e-17 64.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) LPD7 PF18821.1 gi|126178592|ref|YP_001046557.1| - 0.047 13.8 0.1 0.1 12.7 0.1 1.6 1 0 0 1 1 1 0 Large polyvalent protein-associated domain 7 tRNA-synt_2d PF01409.20 gi|126178593|ref|YP_001046558.1| - 3.9e-91 304.9 0.0 5.3e-91 304.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|126178593|ref|YP_001046558.1| - 3.4e-09 36.4 0.0 3.1e-06 26.8 0.0 2.2 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain PheRS_DBD3 PF18553.1 gi|126178593|ref|YP_001046558.1| - 0.0013 18.9 0.2 0.0075 16.5 0.0 2.3 3 0 0 3 3 3 1 PheRS DNA binding domain 3 tRNA-synt_2 PF00152.20 gi|126178593|ref|YP_001046558.1| - 0.03 13.4 0.1 0.16 11.0 0.0 2.1 3 0 0 3 3 3 0 tRNA synthetases class II (D, K and N) MarR_2 PF12802.7 gi|126178593|ref|YP_001046558.1| - 0.063 13.2 0.8 0.13 12.2 0.1 1.9 2 0 0 2 2 2 0 MarR family Quaking_NLS PF16551.5 gi|126178593|ref|YP_001046558.1| - 0.12 12.0 0.1 0.24 11.1 0.1 1.5 1 0 0 1 1 1 0 Putative nuclear localisation signal of quaking tRNA_synthFbeta PF17759.1 gi|126178594|ref|YP_001046559.1| - 2.1e-35 122.1 0.0 3.3e-35 121.5 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|126178594|ref|YP_001046559.1| - 1.7e-16 60.2 0.1 1.6e-14 53.9 0.0 2.6 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|126178594|ref|YP_001046559.1| - 2e-15 56.9 0.0 3.3e-15 56.2 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_His PF13393.6 gi|126178594|ref|YP_001046559.1| - 0.072 12.3 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Histidyl-tRNA synthetase PhetRS_B1 PF18262.1 gi|126178594|ref|YP_001046559.1| - 0.11 12.7 0.0 0.73 10.1 0.0 2.3 2 0 0 2 2 2 0 Phe-tRNA synthetase beta subunit B1 domain His_biosynth PF00977.21 gi|126178595|ref|YP_001046560.1| - 1.1e-87 293.2 0.3 1.3e-87 293.1 0.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein TMP-TENI PF02581.17 gi|126178595|ref|YP_001046560.1| - 2e-05 24.0 0.4 0.017 14.5 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase Dus PF01207.17 gi|126178595|ref|YP_001046560.1| - 3.3e-05 23.1 0.1 0.00031 19.9 0.0 1.9 1 1 0 2 2 2 1 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|126178595|ref|YP_001046560.1| - 0.00023 20.7 2.8 0.13 11.6 0.1 2.5 2 1 1 3 3 3 2 Nitronate monooxygenase G3P_antiterm PF04309.12 gi|126178595|ref|YP_001046560.1| - 0.00057 19.4 0.1 0.0052 16.2 0.1 2.0 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator ThiG PF05690.14 gi|126178595|ref|YP_001046560.1| - 0.0075 15.6 0.1 0.24 10.7 0.0 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG IMPDH PF00478.25 gi|126178595|ref|YP_001046560.1| - 0.025 13.6 1.3 0.27 10.2 0.2 2.1 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|126178595|ref|YP_001046560.1| - 0.033 13.4 0.3 2.1 7.5 0.1 2.1 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase PcrB PF01884.17 gi|126178595|ref|YP_001046560.1| - 0.037 13.5 0.0 0.062 12.7 0.0 1.3 1 0 0 1 1 1 0 PcrB family Trp_syntA PF00290.20 gi|126178595|ref|YP_001046560.1| - 0.096 11.5 0.1 0.14 10.9 0.1 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain SBP_bac_3 PF00497.20 gi|126178595|ref|YP_001046560.1| - 0.16 11.4 0.0 0.78 9.1 0.0 1.8 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 AdoHcyase_NAD PF00670.21 gi|126178596|ref|YP_001046561.1| - 2.8e-51 173.8 1.4 3.8e-51 173.4 0.3 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AdoHcyase PF05221.17 gi|126178596|ref|YP_001046561.1| - 5.8e-51 173.4 0.0 5e-26 91.5 0.1 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase 2-Hacid_dh_C PF02826.19 gi|126178596|ref|YP_001046561.1| - 5.2e-10 39.0 0.1 9e-10 38.2 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|126178596|ref|YP_001046561.1| - 1.6e-08 34.3 0.1 3.8e-08 33.1 0.0 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|126178596|ref|YP_001046561.1| - 0.0017 18.6 0.0 0.0043 17.3 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain Pyr_redox_2 PF07992.14 gi|126178596|ref|YP_001046561.1| - 0.01 15.1 0.0 0.013 14.7 0.0 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|126178596|ref|YP_001046561.1| - 0.022 14.0 0.3 0.094 12.0 0.2 2.1 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ELFV_dehydrog PF00208.21 gi|126178596|ref|YP_001046561.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DUF35_N PF12172.8 gi|126178597|ref|YP_001046562.1| - 0.00098 19.0 4.9 0.00098 19.0 4.9 3.8 4 0 0 4 4 4 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Lar_restr_allev PF14354.6 gi|126178597|ref|YP_001046562.1| - 0.0028 18.0 4.3 0.0028 18.0 4.3 2.8 2 1 1 3 3 3 1 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|126178597|ref|YP_001046562.1| - 0.018 15.2 1.8 0.018 15.2 1.8 4.5 3 1 1 4 4 4 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|126178597|ref|YP_001046562.1| - 0.019 14.9 4.4 0.019 14.9 4.4 3.3 1 1 2 3 3 3 0 Transposase zinc-ribbon domain HypA PF01155.19 gi|126178597|ref|YP_001046562.1| - 0.095 12.7 0.5 0.095 12.7 0.5 3.4 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2_11 PF16622.5 gi|126178597|ref|YP_001046562.1| - 4.4 7.2 11.8 2.3 8.1 0.2 3.1 3 0 0 3 3 3 0 zinc-finger C2H2-type DZR PF12773.7 gi|126178597|ref|YP_001046562.1| - 5.6 7.1 23.3 0.32 11.0 11.1 3.1 1 1 1 2 2 2 0 Double zinc ribbon NRDD PF13597.6 gi|126178597|ref|YP_001046562.1| - 6.2 5.5 8.8 0.71 8.6 0.9 2.2 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase SBP_bac_11 PF13531.6 gi|126178599|ref|YP_001046564.1| - 6.1e-51 173.4 0.9 7.1e-51 173.2 0.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|126178599|ref|YP_001046564.1| - 4.2e-18 66.4 2.6 2.6e-17 63.8 2.6 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|126178599|ref|YP_001046564.1| - 6.3e-06 26.2 0.1 0.00084 19.2 0.1 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.7 gi|126178599|ref|YP_001046564.1| - 0.0059 16.3 2.5 0.0091 15.7 1.0 1.8 2 0 0 2 2 2 1 PBP superfamily domain PBP_like PF12727.7 gi|126178599|ref|YP_001046564.1| - 0.028 13.6 0.0 0.047 12.8 0.0 1.4 1 1 0 1 1 1 0 PBP superfamily domain BPD_transp_1 PF00528.22 gi|126178600|ref|YP_001046565.1| - 2e-18 66.8 14.9 2e-18 66.8 14.9 2.0 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|126178601|ref|YP_001046566.1| - 3.1e-33 115.2 0.0 4.1e-33 114.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126178601|ref|YP_001046566.1| - 6.6e-08 32.7 0.0 0.0022 17.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|126178601|ref|YP_001046566.1| - 8.2e-06 26.4 0.0 1.1e-05 26.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|126178601|ref|YP_001046566.1| - 0.00021 20.9 0.1 0.0004 20.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|126178601|ref|YP_001046566.1| - 0.00057 19.4 0.1 0.29 10.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|126178601|ref|YP_001046566.1| - 0.00089 19.1 0.0 0.0012 18.6 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|126178601|ref|YP_001046566.1| - 0.0026 17.7 0.0 0.0072 16.2 0.1 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|126178601|ref|YP_001046566.1| - 0.0027 18.1 0.4 0.0037 17.7 0.4 1.5 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|126178601|ref|YP_001046566.1| - 0.026 14.4 0.2 1.6 8.6 0.0 2.1 2 0 0 2 2 2 0 NACHT domain Dynamin_N PF00350.23 gi|126178601|ref|YP_001046566.1| - 0.061 13.4 0.1 0.095 12.8 0.1 1.3 1 0 0 1 1 1 0 Dynamin family DUF2813 PF11398.8 gi|126178601|ref|YP_001046566.1| - 0.061 12.6 0.0 0.091 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) HAD PF12710.7 gi|126178601|ref|YP_001046566.1| - 0.066 13.6 0.0 0.094 13.1 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase AAA_5 PF07728.14 gi|126178601|ref|YP_001046566.1| - 0.087 12.8 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|126178601|ref|YP_001046566.1| - 0.099 12.3 0.2 0.16 11.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|126178601|ref|YP_001046566.1| - 0.1 12.7 0.1 0.4 10.8 0.1 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|126178601|ref|YP_001046566.1| - 0.13 11.5 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|126178601|ref|YP_001046566.1| - 0.15 12.4 0.6 0.65 10.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain MukB PF04310.12 gi|126178601|ref|YP_001046566.1| - 0.18 11.6 0.0 0.32 10.8 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal OGG_N PF07934.12 gi|126178603|ref|YP_001046568.1| - 3.9e-19 68.9 0.0 2.9e-17 62.9 0.0 2.2 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.25 gi|126178603|ref|YP_001046568.1| - 3e-08 34.1 0.0 4.8e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein Radical_SAM PF04055.21 gi|126178604|ref|YP_001046569.1| - 2.2e-26 93.2 0.1 3e-26 92.8 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|126178604|ref|YP_001046569.1| - 0.00019 21.5 0.0 0.0004 20.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|126178604|ref|YP_001046569.1| - 0.0072 16.6 0.0 0.014 15.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2655 PF10848.8 gi|126178604|ref|YP_001046569.1| - 1.4 9.3 4.7 1.1 9.6 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2655) Dala_Dala_lig_C PF07478.13 gi|126178605|ref|YP_001046570.1| - 2e-26 92.8 0.0 2.7e-26 92.4 0.0 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Methyltransf_25 PF13649.6 gi|126178605|ref|YP_001046570.1| - 1.8e-20 73.5 0.0 8.8e-20 71.2 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126178605|ref|YP_001046570.1| - 3e-17 63.1 0.0 9.3e-17 61.5 0.0 1.9 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126178605|ref|YP_001046570.1| - 2.3e-15 56.7 0.0 3.7e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|126178605|ref|YP_001046570.1| - 7.1e-13 48.7 0.0 1.6e-12 47.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|126178605|ref|YP_001046570.1| - 2.1e-10 40.3 0.0 1.2e-09 37.8 0.0 1.9 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|126178605|ref|YP_001046570.1| - 2.8e-06 26.9 0.0 5.2e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|126178605|ref|YP_001046570.1| - 4.1e-05 23.2 0.0 7e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain ATP-grasp_4 PF13535.6 gi|126178605|ref|YP_001046570.1| - 0.00011 21.9 0.0 0.00078 19.1 0.0 2.3 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|126178605|ref|YP_001046570.1| - 0.00064 19.5 0.0 0.14 11.9 0.0 3.1 3 0 0 3 3 3 1 ATP-grasp in the biosynthetic pathway with Ter operon CMAS PF02353.20 gi|126178605|ref|YP_001046570.1| - 0.0063 15.8 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|126178605|ref|YP_001046570.1| - 0.0089 15.6 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TTL PF03133.15 gi|126178605|ref|YP_001046570.1| - 0.015 14.4 0.0 0.033 13.3 0.0 1.5 1 0 0 1 1 1 0 Tubulin-tyrosine ligase family PCMT PF01135.19 gi|126178605|ref|YP_001046570.1| - 0.1 12.3 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) ATP-grasp_3 PF02655.14 gi|126178605|ref|YP_001046570.1| - 0.11 12.5 0.0 0.44 10.6 0.0 1.9 1 1 0 1 1 1 0 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|126178605|ref|YP_001046570.1| - 0.11 11.7 0.0 1 8.5 0.0 2.2 2 1 0 2 2 2 0 Sugar-transfer associated ATP-grasp zinc_ribbon_6 PF14599.6 gi|126178606|ref|YP_001046571.1| - 0.014 15.4 3.5 0.4 10.7 4.7 2.1 1 1 1 2 2 2 0 Zinc-ribbon zinc_ribbon_6 PF14599.6 gi|126178607|ref|YP_001046572.1| - 0.0053 16.7 3.8 0.028 14.5 0.3 2.1 1 1 1 2 2 2 2 Zinc-ribbon ArfGap PF01412.18 gi|126178607|ref|YP_001046572.1| - 0.088 12.9 0.3 0.1 12.7 0.3 1.1 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf ABC2_membrane PF01061.24 gi|126178608|ref|YP_001046573.1| - 1.1e-22 80.5 21.7 1.1e-22 80.5 21.7 1.8 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|126178608|ref|YP_001046573.1| - 5.7e-06 25.7 30.1 6.9e-06 25.4 30.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|126178609|ref|YP_001046574.1| - 6.8e-30 104.4 0.0 1.6e-29 103.2 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|126178609|ref|YP_001046574.1| - 5.4e-16 59.3 0.2 1.1e-10 41.8 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|126178609|ref|YP_001046574.1| - 2.2e-06 27.6 0.0 0.0017 18.2 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|126178609|ref|YP_001046574.1| - 0.0035 16.8 0.0 0.46 9.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|126178609|ref|YP_001046574.1| - 0.0079 16.7 0.0 0.014 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|126178609|ref|YP_001046574.1| - 0.014 15.1 0.2 0.064 13.0 0.0 2.1 3 0 0 3 3 3 0 AAA domain DLIC PF05783.11 gi|126178609|ref|YP_001046574.1| - 0.044 12.6 0.0 0.062 12.1 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) Rad17 PF03215.15 gi|126178609|ref|YP_001046574.1| - 0.086 12.8 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain DUF4162 PF13732.6 gi|126178609|ref|YP_001046574.1| - 0.13 13.0 0.0 0.32 11.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) ATP_bind_1 PF03029.17 gi|126178609|ref|YP_001046574.1| - 0.19 11.4 0.1 0.37 10.5 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein SET PF00856.28 gi|126178610|ref|YP_001046575.1| - 2.2e-12 47.7 0.3 1e-07 32.5 0.1 2.0 1 1 1 2 2 2 2 SET domain UPF0126 PF03458.13 gi|126178611|ref|YP_001046576.1| - 0.2 11.5 0.1 0.2 11.5 0.1 2.6 3 1 0 3 3 3 0 UPF0126 domain DEC-1_N PF04625.13 gi|126178611|ref|YP_001046576.1| - 1.2 8.1 5.3 1.7 7.6 5.3 1.2 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region TOBE PF03459.17 gi|126178612|ref|YP_001046577.1| - 6.7e-19 67.9 2.0 7.4e-19 67.8 2.0 1.0 1 0 0 1 1 1 1 TOBE domain OB_aCoA_assoc PF01796.17 gi|126178612|ref|YP_001046577.1| - 0.026 14.5 0.9 0.034 14.1 0.9 1.3 1 1 0 1 1 1 0 DUF35 OB-fold domain, acyl-CoA-associated TOBE_3 PF12857.7 gi|126178612|ref|YP_001046577.1| - 0.029 14.3 0.1 0.041 13.8 0.1 1.3 1 1 0 1 1 1 0 TOBE-like domain VAPB_antitox PF02697.14 gi|126178613|ref|YP_001046578.1| - 0.0015 19.2 0.1 0.0061 17.3 0.1 1.8 1 1 0 1 1 1 1 Putative antitoxin RHH_1 PF01402.21 gi|126178613|ref|YP_001046578.1| - 0.24 11.4 1.4 17 5.5 0.1 2.4 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family ParE_toxin PF05016.15 gi|126178614|ref|YP_001046579.1| - 2.3e-05 24.9 0.1 2.6e-05 24.7 0.1 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE PGF-CTERM PF18204.1 gi|126178615|ref|YP_001046580.1| - 4.4e-06 26.5 1.7 8.3e-06 25.6 1.7 1.5 1 0 0 1 1 1 1 PGF-CTERM motif Rad60-SLD PF11976.8 gi|126178615|ref|YP_001046580.1| - 0.16 11.8 0.3 1.1 9.2 0.1 2.4 2 1 0 2 2 2 0 Ubiquitin-2 like Rad60 SUMO-like TMEM132D_C PF15706.5 gi|126178615|ref|YP_001046580.1| - 0.17 11.6 0.6 0.28 11.0 0.0 1.8 2 0 0 2 2 2 0 Mature oligodendrocyte transmembrane protein, TMEM132D, C-term HTH_IclR PF09339.10 gi|126178616|ref|YP_001046581.1| - 0.0054 16.5 0.0 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|126178616|ref|YP_001046581.1| - 0.092 12.7 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 MarR family AlbA_2 PF04326.14 gi|126178617|ref|YP_001046582.1| - 3.4e-13 50.0 0.0 5.9e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 Putative DNA-binding domain HATPase_c_4 PF13749.6 gi|126178617|ref|YP_001046582.1| - 0.00012 22.2 0.0 0.00025 21.1 0.0 1.5 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal DNA_pol3_theta PF06440.11 gi|126178617|ref|YP_001046582.1| - 0.12 12.1 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase III, theta subunit Skp1 PF01466.19 gi|126178617|ref|YP_001046582.1| - 0.21 11.7 0.4 18 5.6 0.0 2.9 3 0 0 3 3 3 0 Skp1 family, dimerisation domain MCH PF02289.16 gi|126178618|ref|YP_001046583.1| - 9.3e-133 442.3 0.0 1e-132 442.1 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) AAA_16 PF13191.6 gi|126178619|ref|YP_001046584.1| - 1.3e-09 38.6 0.7 4.7e-08 33.6 0.1 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|126178619|ref|YP_001046584.1| - 1.7e-07 31.6 0.0 4e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.11 gi|126178619|ref|YP_001046584.1| - 9.9e-06 25.5 0.0 3.7e-05 23.6 0.0 2.1 1 1 0 1 1 1 1 CDC6, C terminal winged helix domain NACHT PF05729.12 gi|126178619|ref|YP_001046584.1| - 0.004 17.1 0.0 0.0074 16.2 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_33 PF13671.6 gi|126178619|ref|YP_001046584.1| - 0.014 15.5 0.2 0.063 13.4 0.0 2.3 1 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|126178619|ref|YP_001046584.1| - 0.02 14.6 0.0 0.059 13.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain HTH_29 PF13551.6 gi|126178619|ref|YP_001046584.1| - 0.025 14.6 0.1 0.068 13.2 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn helix AAA PF00004.29 gi|126178619|ref|YP_001046584.1| - 0.03 14.8 0.1 0.064 13.7 0.1 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TIP49_C PF17856.1 gi|126178619|ref|YP_001046584.1| - 0.031 14.4 0.2 0.083 13.0 0.2 1.7 1 0 0 1 1 1 0 TIP49 AAA-lid domain AAA_7 PF12775.7 gi|126178619|ref|YP_001046584.1| - 0.037 13.5 0.0 0.11 12.0 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region DUF815 PF05673.13 gi|126178619|ref|YP_001046584.1| - 0.06 12.5 0.0 0.13 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|126178619|ref|YP_001046584.1| - 0.072 12.3 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain NTPase_1 PF03266.15 gi|126178619|ref|YP_001046584.1| - 0.091 12.7 2.1 0.58 10.0 0.1 3.0 3 1 0 4 4 4 0 NTPase DZR PF12773.7 gi|126178620|ref|YP_001046585.1| - 0.1 12.7 1.3 0.22 11.6 1.3 1.6 1 0 0 1 1 1 0 Double zinc ribbon DUF3040 PF11239.8 gi|126178621|ref|YP_001046586.1| - 0.031 14.5 0.5 0.048 13.9 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Beta_helix PF13229.6 gi|126178622|ref|YP_001046587.1| - 1.1e-05 25.4 9.8 0.028 14.3 3.6 3.6 1 1 1 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|126178622|ref|YP_001046587.1| - 0.00012 22.1 0.2 0.00075 19.4 0.1 2.2 2 1 0 2 2 2 1 Pectate lyase superfamily protein CARDB PF07705.11 gi|126178623|ref|YP_001046588.1| - 8.4e-30 103.1 4.1 5.6e-14 52.2 0.2 3.2 3 0 0 3 3 3 2 CARDB Dockerin_1 PF00404.18 gi|126178623|ref|YP_001046588.1| - 4.5e-06 26.7 1.5 1.9e-05 24.8 1.0 2.4 3 0 0 3 3 3 1 Dockerin type I domain Pectate_lyase_3 PF12708.7 gi|126178623|ref|YP_001046588.1| - 1e-05 25.5 0.1 1e-05 25.5 0.1 2.8 2 1 0 3 3 3 1 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|126178623|ref|YP_001046588.1| - 8.8e-05 22.4 21.5 0.069 13.0 8.6 3.7 1 1 2 3 3 3 3 Right handed beta helix region EF-hand_1 PF00036.32 gi|126178623|ref|YP_001046588.1| - 0.055 13.0 0.2 3.8 7.3 0.0 2.6 2 0 0 2 2 2 0 EF hand Lysyl_oxidase PF01186.17 gi|126178623|ref|YP_001046588.1| - 0.065 12.9 0.0 14 5.2 0.0 2.7 2 0 0 2 2 2 0 Lysyl oxidase DUF4832 PF16116.5 gi|126178623|ref|YP_001046588.1| - 0.11 12.3 0.0 16 5.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4832) EF-hand_5 PF13202.6 gi|126178623|ref|YP_001046588.1| - 1.2 8.8 7.9 1.7 8.3 0.1 2.9 3 0 0 3 3 3 0 EF hand Ecm33 PF12454.8 gi|126178623|ref|YP_001046588.1| - 2.1 8.5 7.0 16 5.7 0.1 3.5 3 0 0 3 3 3 0 GPI-anchored cell wall organization protein Polysacc_synt PF01943.17 gi|126178624|ref|YP_001046589.1| - 2.8e-07 30.2 27.8 2.8e-07 30.2 27.8 2.4 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|126178624|ref|YP_001046589.1| - 8.8e-06 25.8 9.3 8.8e-06 25.8 9.3 4.3 2 1 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|126178624|ref|YP_001046589.1| - 0.002 17.4 16.4 0.002 17.4 16.4 2.0 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein TraQ PF09679.10 gi|126178624|ref|YP_001046589.1| - 4 7.4 8.4 15 5.5 0.6 3.5 3 0 0 3 3 3 0 Type-F conjugative transfer system pilin chaperone (TraQ) DUF2206 PF09971.9 gi|126178625|ref|YP_001046590.1| - 1.4e-121 405.8 2.0 1.4e-121 405.8 2.0 3.3 3 0 0 3 3 3 1 Predicted membrane protein (DUF2206) PetM PF08041.11 gi|126178625|ref|YP_001046590.1| - 7.3 6.3 12.9 9.4 5.9 3.4 4.1 3 0 0 3 3 3 0 PetM family of cytochrome b6f complex subunit 7 Glyco_trans_1_4 PF13692.6 gi|126178626|ref|YP_001046591.1| - 1.4e-23 83.8 0.0 2.6e-23 82.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|126178626|ref|YP_001046591.1| - 8.8e-23 80.7 0.0 1.8e-22 79.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126178626|ref|YP_001046591.1| - 1.1e-17 64.6 0.0 2e-17 63.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|126178626|ref|YP_001046591.1| - 4.3e-12 46.8 0.5 2.6e-11 44.2 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|126178626|ref|YP_001046591.1| - 4.1e-06 27.1 0.0 8.2e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|126178626|ref|YP_001046591.1| - 0.00017 21.7 0.0 0.00029 20.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Beta_helix PF13229.6 gi|126178627|ref|YP_001046592.1| - 5.2e-09 36.2 9.8 3.3e-05 23.8 3.5 3.4 2 1 0 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|126178627|ref|YP_001046592.1| - 6e-06 26.2 3.7 1.1e-05 25.3 0.4 2.5 2 1 0 2 2 2 1 Pectate lyase superfamily protein Glycos_transf_1 PF00534.20 gi|126178628|ref|YP_001046593.1| - 5.5e-31 107.4 0.0 9.8e-31 106.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126178628|ref|YP_001046593.1| - 8.4e-27 94.2 0.0 1.5e-26 93.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126178628|ref|YP_001046593.1| - 1.4e-26 93.5 0.2 1.6e-25 90.0 0.5 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|126178628|ref|YP_001046593.1| - 1.1e-22 81.2 0.5 2.2e-22 80.2 0.3 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|126178628|ref|YP_001046593.1| - 4.9e-08 33.0 0.0 1.2e-05 25.1 0.0 2.2 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|126178628|ref|YP_001046593.1| - 3.1e-07 30.7 0.0 6.6e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|126178628|ref|YP_001046593.1| - 0.025 14.6 0.1 0.078 13.0 0.1 1.8 1 1 0 1 1 1 0 Glycosyl transferase 4-like Glycos_transf_N PF04413.16 gi|126178628|ref|YP_001046593.1| - 0.15 11.7 0.0 0.32 10.6 0.0 1.5 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) PGA_cap PF09587.10 gi|126178629|ref|YP_001046594.1| - 2.2e-63 214.1 0.0 3.2e-63 213.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap 7TM-7TMR_HD PF07698.11 gi|126178630|ref|YP_001046595.1| - 0.042 13.6 0.1 0.061 13.1 0.1 1.2 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase TraX PF05857.11 gi|126178631|ref|YP_001046596.1| - 0.26 11.3 5.8 0.29 11.1 5.8 1.1 1 0 0 1 1 1 0 TraX protein DUF2070 PF09843.9 gi|126178631|ref|YP_001046596.1| - 6.1 5.0 9.1 8.2 4.6 9.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF58 PF01882.18 gi|126178632|ref|YP_001046597.1| - 5.9e-13 48.9 0.0 1.2e-12 47.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|126178633|ref|YP_001046598.1| - 6.3e-48 161.9 0.1 1.1e-47 161.1 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|126178633|ref|YP_001046598.1| - 1.3e-20 73.0 0.3 2.3e-20 72.2 0.3 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|126178633|ref|YP_001046598.1| - 1.3e-11 44.6 0.0 2.4e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|126178633|ref|YP_001046598.1| - 6.4e-07 29.3 0.1 3e-06 27.1 0.1 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|126178633|ref|YP_001046598.1| - 7.4e-06 26.4 0.0 1.7e-05 25.2 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|126178633|ref|YP_001046598.1| - 0.0007 18.7 0.0 0.0011 18.2 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|126178633|ref|YP_001046598.1| - 0.02 14.6 0.0 0.7 9.6 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_30 PF13604.6 gi|126178633|ref|YP_001046598.1| - 0.15 11.8 0.1 0.66 9.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain DUF4350 PF14258.6 gi|126178634|ref|YP_001046599.1| - 9.6e-08 32.4 0.1 2.9e-07 30.8 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|126178634|ref|YP_001046599.1| - 0.0052 16.3 0.0 0.0078 15.7 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system CarboxypepD_reg PF13620.6 gi|126178635|ref|YP_001046600.1| - 0.00011 22.4 2.3 0.00018 21.7 0.3 2.3 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4129 PF13559.6 gi|126178635|ref|YP_001046600.1| - 0.0006 20.0 1.3 0.0024 18.1 1.3 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4129) Big_3_5 PF16640.5 gi|126178635|ref|YP_001046600.1| - 0.031 14.5 4.9 0.38 11.0 0.2 2.7 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 3) Glycos_transf_2 PF00535.26 gi|126178637|ref|YP_001046602.1| - 1.5e-06 28.1 0.1 2.4e-06 27.5 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 GAF_2 PF13185.6 gi|126178637|ref|YP_001046602.1| - 0.044 14.1 0.2 0.089 13.1 0.1 1.5 1 1 0 1 1 1 0 GAF domain Glyco_tranf_2_4 PF13704.6 gi|126178637|ref|YP_001046602.1| - 0.051 14.1 0.0 0.064 13.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_1 PF00534.20 gi|126178638|ref|YP_001046603.1| - 1.2e-35 122.6 0.0 4.6e-35 120.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126178638|ref|YP_001046603.1| - 2.8e-27 95.8 0.0 4.5e-27 95.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126178638|ref|YP_001046603.1| - 3.3e-26 92.3 0.0 4.7e-26 91.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|126178638|ref|YP_001046603.1| - 3.6e-14 53.5 0.0 6.7e-14 52.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|126178638|ref|YP_001046603.1| - 2.4e-09 37.4 0.0 4.2e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|126178638|ref|YP_001046603.1| - 2e-07 31.1 0.0 3.8e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.20 gi|126178640|ref|YP_001046605.1| - 9.5e-37 126.2 0.0 1.4e-36 125.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126178640|ref|YP_001046605.1| - 5.5e-33 114.2 0.0 9e-33 113.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126178640|ref|YP_001046605.1| - 1.1e-24 87.3 0.0 2.2e-24 86.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|126178640|ref|YP_001046605.1| - 4.7e-14 53.1 0.0 1.3e-13 51.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|126178640|ref|YP_001046605.1| - 3.8e-12 46.4 0.0 7.5e-12 45.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|126178640|ref|YP_001046605.1| - 9.1e-10 38.7 0.0 1.4e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like DUF2325 PF10087.9 gi|126178640|ref|YP_001046605.1| - 0.01 15.9 0.0 0.049 13.8 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2325) Gamma_PGA_hydro PF05908.11 gi|126178640|ref|YP_001046605.1| - 0.035 13.5 0.1 0.059 12.8 0.1 1.3 1 0 0 1 1 1 0 Poly-gamma-glutamate hydrolase Glycos_transf_1 PF00534.20 gi|126178641|ref|YP_001046606.1| - 5.9e-36 123.6 0.0 1.1e-35 122.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126178641|ref|YP_001046606.1| - 4.6e-30 104.8 0.0 9.7e-30 103.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|126178641|ref|YP_001046606.1| - 7.4e-13 48.7 0.0 1.4e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|126178643|ref|YP_001046608.1| - 1.5e-47 161.3 0.1 3.7e-47 160.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126178643|ref|YP_001046608.1| - 1.8e-40 138.5 0.1 3.5e-39 134.3 0.1 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126178643|ref|YP_001046608.1| - 4.3e-24 85.4 0.2 7e-24 84.7 0.2 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|126178643|ref|YP_001046608.1| - 9.2e-18 65.2 0.1 3.4e-17 63.4 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|126178643|ref|YP_001046608.1| - 1.1e-14 54.5 0.0 3.1e-14 53.1 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|126178643|ref|YP_001046608.1| - 7.8e-14 51.9 0.0 1.2e-13 51.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Asn_synthase PF00733.21 gi|126178644|ref|YP_001046609.1| - 1.9e-05 24.5 0.0 0.0001 22.1 0.0 1.9 2 0 0 2 2 2 1 Asparagine synthase DUF1612 PF07756.12 gi|126178644|ref|YP_001046609.1| - 0.065 13.5 0.1 0.21 11.8 0.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1612) DUF4208 PF13907.6 gi|126178646|ref|YP_001046611.1| - 0.15 12.5 0.0 0.16 12.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4208) Asn_synthase PF00733.21 gi|126178647|ref|YP_001046612.1| - 1.1e-05 25.4 0.0 0.00049 19.9 0.0 2.3 2 0 0 2 2 2 2 Asparagine synthase Polysacc_synt_3 PF13440.6 gi|126178648|ref|YP_001046613.1| - 1.3e-19 70.6 7.3 1.3e-19 70.6 7.3 1.4 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|126178648|ref|YP_001046613.1| - 6.1e-10 38.9 16.4 6.1e-10 38.9 16.4 2.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein UDPG_MGDP_dh_N PF03721.14 gi|126178649|ref|YP_001046614.1| - 1.6e-32 112.6 1.4 5.7e-25 88.0 0.4 2.5 1 1 1 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|126178649|ref|YP_001046614.1| - 2.3e-24 85.4 0.0 4.9e-24 84.3 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|126178649|ref|YP_001046614.1| - 2.7e-18 66.3 0.0 1.8e-16 60.4 0.0 2.8 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|126178649|ref|YP_001046614.1| - 1e-07 32.2 0.0 4.1e-05 23.8 0.0 2.5 2 0 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|126178649|ref|YP_001046614.1| - 2.4e-05 23.8 0.0 0.033 13.5 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|126178649|ref|YP_001046614.1| - 0.00057 20.4 0.2 0.0024 18.4 0.0 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.17 gi|126178649|ref|YP_001046614.1| - 0.0024 16.9 0.5 0.047 12.7 0.1 2.7 3 0 0 3 3 3 1 Prephenate dehydrogenase Epimerase PF01370.21 gi|126178650|ref|YP_001046615.1| - 1.2e-58 198.5 0.0 1.4e-58 198.2 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|126178650|ref|YP_001046615.1| - 1.3e-55 189.1 0.0 1.4e-54 185.7 0.0 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|126178650|ref|YP_001046615.1| - 1e-18 67.4 0.0 1.4e-18 66.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|126178650|ref|YP_001046615.1| - 1.1e-16 60.9 0.0 5e-16 58.7 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|126178650|ref|YP_001046615.1| - 3.4e-09 36.2 0.0 5.5e-09 35.5 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|126178650|ref|YP_001046615.1| - 4.2e-09 36.6 0.0 6.7e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|126178650|ref|YP_001046615.1| - 2e-05 23.9 0.1 0.0017 17.6 0.1 2.2 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.13 gi|126178650|ref|YP_001046615.1| - 0.004 16.7 0.0 0.0064 16.1 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.18 gi|126178650|ref|YP_001046615.1| - 0.018 15.3 0.0 0.043 14.1 0.0 1.6 2 0 0 2 2 2 0 TrkA-N domain KR PF08659.10 gi|126178650|ref|YP_001046615.1| - 0.052 13.4 0.3 0.17 11.8 0.3 1.9 1 1 0 1 1 1 0 KR domain Sacchrp_dh_NADP PF03435.18 gi|126178650|ref|YP_001046615.1| - 0.13 12.5 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DUF98 PF01947.16 gi|126178651|ref|YP_001046616.1| - 6.4e-28 97.6 0.0 1.1e-27 96.9 0.0 1.3 1 0 0 1 1 1 1 p-hydroxybenzoic acid synthase GHMP_kinases_C PF08544.13 gi|126178651|ref|YP_001046616.1| - 2.6e-08 34.1 1.0 6.9e-08 32.8 0.0 2.1 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|126178651|ref|YP_001046616.1| - 1.2e-05 25.4 3.5 3.9e-05 23.8 3.5 2.0 1 0 0 1 1 1 1 GHMP kinases N terminal domain UTRA PF07702.13 gi|126178651|ref|YP_001046616.1| - 0.001 18.9 0.6 0.0024 17.7 0.6 1.7 1 1 0 1 1 1 1 UTRA domain PhosphMutase PF10143.9 gi|126178652|ref|YP_001046617.1| - 3.5e-58 196.2 0.0 5.4e-58 195.6 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|126178652|ref|YP_001046617.1| - 2e-37 128.9 0.0 2.4e-37 128.6 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|126178652|ref|YP_001046617.1| - 0.02 14.5 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase Epimerase PF01370.21 gi|126178653|ref|YP_001046618.1| - 2.7e-47 161.2 0.0 3.3e-47 161.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|126178653|ref|YP_001046618.1| - 3e-42 145.2 0.0 4.1e-42 144.8 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|126178653|ref|YP_001046618.1| - 1.4e-15 57.1 0.0 1.7e-15 56.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|126178653|ref|YP_001046618.1| - 4.6e-14 52.2 0.1 2.8e-13 49.7 0.1 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|126178653|ref|YP_001046618.1| - 6.2e-14 51.8 0.0 1e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|126178653|ref|YP_001046618.1| - 2.5e-09 36.7 0.1 2.7e-06 26.7 0.0 2.4 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|126178653|ref|YP_001046618.1| - 6.7e-06 26.1 0.0 1e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|126178653|ref|YP_001046618.1| - 0.00094 18.7 0.3 0.11 11.9 0.1 2.4 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|126178653|ref|YP_001046618.1| - 0.098 12.6 0.0 0.36 10.7 0.1 1.8 2 0 0 2 2 2 0 KR domain DUF368 PF04018.13 gi|126178654|ref|YP_001046619.1| - 1.5e-62 211.4 19.0 2e-62 211.0 19.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF368) SIS PF01380.22 gi|126178656|ref|YP_001046621.1| - 6e-17 61.7 0.0 1e-16 61.0 0.0 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|126178656|ref|YP_001046621.1| - 4.3e-09 36.5 0.2 7.1e-05 22.8 0.0 2.3 1 1 1 2 2 2 2 SIS domain POR PF01558.18 gi|126178657|ref|YP_001046622.1| - 2.4e-39 135.3 0.4 2.8e-39 135.0 0.4 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase VirK PF06903.12 gi|126178657|ref|YP_001046622.1| - 0.18 11.9 0.0 0.32 11.1 0.0 1.4 1 0 0 1 1 1 0 VirK protein Fer4 PF00037.27 gi|126178658|ref|YP_001046623.1| - 2.4e-14 52.4 17.1 1.1e-07 31.4 6.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|126178658|ref|YP_001046623.1| - 2.7e-11 43.0 16.9 3.2e-07 30.2 6.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126178658|ref|YP_001046623.1| - 1.3e-10 41.7 10.8 4.7e-05 23.9 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126178658|ref|YP_001046623.1| - 7.4e-10 39.6 13.6 4.8e-05 24.2 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|126178658|ref|YP_001046623.1| - 1.2e-09 38.2 11.4 2.4e-09 37.2 11.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126178658|ref|YP_001046623.1| - 4.5e-09 35.9 12.3 2.2e-05 24.3 2.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126178658|ref|YP_001046623.1| - 1.3e-08 34.9 27.8 1.1e-06 28.7 14.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126178658|ref|YP_001046623.1| - 5.9e-08 32.7 25.5 5e-06 26.5 15.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126178658|ref|YP_001046623.1| - 8.6e-06 26.1 14.5 0.0072 16.7 3.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126178658|ref|YP_001046623.1| - 0.00015 22.0 15.3 0.034 14.6 3.8 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|126178658|ref|YP_001046623.1| - 0.00061 20.3 16.0 0.16 12.5 4.5 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|126178658|ref|YP_001046623.1| - 0.00075 20.0 10.6 0.072 13.6 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|126178658|ref|YP_001046623.1| - 0.0014 19.4 12.3 0.2 12.5 1.6 2.4 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|126178658|ref|YP_001046623.1| - 0.0016 19.3 25.2 0.0021 18.9 4.3 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|126178658|ref|YP_001046623.1| - 0.13 12.5 11.5 2 8.6 4.1 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|126178658|ref|YP_001046623.1| - 0.15 13.0 15.9 2 9.3 4.5 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|126178659|ref|YP_001046624.1| - 7.2e-66 222.2 0.2 9.9e-66 221.8 0.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|126178659|ref|YP_001046624.1| - 2e-33 114.7 0.1 4.7e-33 113.5 0.1 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|126178659|ref|YP_001046624.1| - 1.9e-06 27.8 0.0 4e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|126178660|ref|YP_001046625.1| - 3.4e-27 95.1 0.0 5.5e-27 94.4 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LysE PF01810.18 gi|126178661|ref|YP_001046626.1| - 1.2e-13 51.0 12.5 1.6e-13 50.6 12.5 1.1 1 0 0 1 1 1 1 LysE type translocator DUF4493 PF14900.6 gi|126178662|ref|YP_001046627.1| - 0.089 12.6 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4493) DUF4774 PF15999.5 gi|126178662|ref|YP_001046627.1| - 0.16 11.8 1.1 1.2 9.0 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4774) PALP PF00291.25 gi|126178663|ref|YP_001046628.1| - 3.2e-77 259.8 4.9 3.8e-77 259.6 4.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zinc_ribbon_2 PF13240.6 gi|126178663|ref|YP_001046628.1| - 0.039 13.7 0.6 0.07 12.9 0.6 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|126178663|ref|YP_001046628.1| - 0.05 13.0 0.2 9.6 5.8 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.14 gi|126178663|ref|YP_001046628.1| - 0.053 13.5 1.1 0.14 12.2 1.1 1.7 1 0 0 1 1 1 0 Adenylate kinase, active site lid PCSK9_C3 PF18463.1 gi|126178663|ref|YP_001046628.1| - 0.094 13.0 0.2 0.23 11.7 0.2 1.6 1 0 0 1 1 1 0 Proprotein convertase subtilisin-like/kexin type 9 C-terminal domain PK_C PF02887.16 gi|126178663|ref|YP_001046628.1| - 0.16 12.2 0.9 1.2 9.4 0.1 2.3 2 1 0 2 2 2 0 Pyruvate kinase, alpha/beta domain Rubredoxin_2 PF18073.1 gi|126178663|ref|YP_001046628.1| - 1.9 8.3 4.0 21 4.9 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain YdjM PF04307.14 gi|126178664|ref|YP_001046629.1| - 1.1e-26 93.2 11.4 1.5e-26 92.7 11.4 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase CN_hydrolase PF00795.22 gi|126178665|ref|YP_001046630.1| - 2.8e-42 144.9 0.0 3.2e-42 144.7 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF4191 PF13829.6 gi|126178666|ref|YP_001046631.1| - 0.31 10.3 2.7 0.36 10.1 2.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) MarC PF01914.17 gi|126178667|ref|YP_001046632.1| - 1.5e-56 191.0 16.6 1.7e-56 190.8 16.6 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein DUF3522 PF12036.8 gi|126178667|ref|YP_001046632.1| - 0.66 10.2 9.2 0.037 14.3 2.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3522) NDK PF00334.19 gi|126178668|ref|YP_001046633.1| - 7.3e-50 168.5 0.0 8.1e-50 168.3 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.20 gi|126178669|ref|YP_001046634.1| - 1.1e-22 80.1 0.8 1.2e-22 79.9 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|126178669|ref|YP_001046634.1| - 0.0014 18.5 3.2 0.002 18.0 3.2 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.13 gi|126178669|ref|YP_001046634.1| - 0.0016 18.5 0.2 0.0022 18.0 0.2 1.2 1 0 0 1 1 1 1 YHS domain Desulfoferrod_N PF06397.12 gi|126178669|ref|YP_001046634.1| - 0.01 15.4 0.2 0.019 14.6 0.2 1.5 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain VATC PF18716.1 gi|126178669|ref|YP_001046634.1| - 0.012 15.4 3.1 0.029 14.2 3.1 1.7 1 1 0 1 1 1 0 Vms1-associating treble clef domain TF_Zn_Ribbon PF08271.12 gi|126178669|ref|YP_001046634.1| - 0.016 14.7 0.3 0.039 13.5 0.3 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding DUF3268 PF11672.8 gi|126178669|ref|YP_001046634.1| - 0.084 13.2 0.2 0.084 13.2 0.2 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain DUF2116 PF09889.9 gi|126178669|ref|YP_001046634.1| - 0.12 12.3 0.3 0.42 10.6 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) SerH PF06873.11 gi|126178669|ref|YP_001046634.1| - 0.17 10.7 0.0 0.18 10.5 0.0 1.0 1 0 0 1 1 1 0 Cell surface immobilisation antigen SerH SOBP PF15279.6 gi|126178669|ref|YP_001046634.1| - 0.22 12.1 0.4 0.27 11.8 0.4 1.1 1 0 0 1 1 1 0 Sine oculis-binding protein Ribosomal_S28e PF01200.18 gi|126178670|ref|YP_001046635.1| - 1.2e-29 102.0 0.3 1.3e-29 101.9 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|126178671|ref|YP_001046636.1| - 1.8e-24 85.3 0.3 2.1e-24 85.1 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|126178671|ref|YP_001046636.1| - 0.00016 21.5 0.0 0.00026 20.8 0.0 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain DUF2298 PF10060.9 gi|126178672|ref|YP_001046637.1| - 4.8e-103 345.5 45.0 4.8e-103 345.5 45.0 1.5 2 0 0 2 2 2 1 Uncharacterized membrane protein (DUF2298) LPG_synthase_TM PF03706.13 gi|126178673|ref|YP_001046638.1| - 5.9e-53 180.4 35.1 6.7e-53 180.2 35.1 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glycos_transf_2 PF00535.26 gi|126178674|ref|YP_001046639.1| - 1.5e-24 86.7 0.0 2.1e-24 86.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|126178674|ref|YP_001046639.1| - 0.00052 20.0 0.0 0.00061 19.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|126178674|ref|YP_001046639.1| - 0.001 18.6 0.0 0.0015 18.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|126178674|ref|YP_001046639.1| - 0.0034 17.9 0.0 0.0089 16.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 Amino_oxidase PF01593.24 gi|126178675|ref|YP_001046640.1| - 3.3e-22 79.4 0.1 9.8e-22 77.8 0.1 1.6 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.24 gi|126178675|ref|YP_001046640.1| - 3.4e-12 46.6 1.8 1.2e-11 44.9 1.8 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|126178675|ref|YP_001046640.1| - 1.5e-10 41.2 0.2 4.3e-10 39.7 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|126178675|ref|YP_001046640.1| - 0.0056 17.2 0.0 0.26 11.9 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|126178675|ref|YP_001046640.1| - 0.0067 15.5 0.0 0.41 9.7 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain DUF3017 PF11222.8 gi|126178675|ref|YP_001046640.1| - 0.065 13.5 0.1 0.17 12.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3017) Pyr_redox_2 PF07992.14 gi|126178675|ref|YP_001046640.1| - 0.15 11.3 0.0 0.27 10.4 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Tubulin PF00091.25 gi|126178676|ref|YP_001046641.1| - 3.8e-28 99.0 0.1 6.9e-28 98.2 0.1 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|126178676|ref|YP_001046641.1| - 0.00022 20.5 0.0 0.00039 19.7 0.0 1.4 1 0 0 1 1 1 1 Tubulin like DUF5053 PF16476.5 gi|126178676|ref|YP_001046641.1| - 0.11 12.1 0.0 0.3 10.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF5053) HtaA PF04213.13 gi|126178677|ref|YP_001046642.1| - 0.05 14.1 0.1 0.093 13.2 0.1 1.4 1 0 0 1 1 1 0 Htaa Mce4_CUP1 PF11887.8 gi|126178677|ref|YP_001046642.1| - 0.11 11.9 1.7 0.13 11.7 0.6 1.7 2 0 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative SKG6 PF08693.10 gi|126178677|ref|YP_001046642.1| - 0.45 10.0 5.6 1.2 8.7 5.6 1.7 1 0 0 1 1 1 0 Transmembrane alpha-helix domain Ribosomal_60s PF00428.19 gi|126178677|ref|YP_001046642.1| - 2.1 9.0 7.8 3.3 8.3 6.8 1.9 1 1 0 1 1 1 0 60s Acidic ribosomal protein PMT_2 PF13231.6 gi|126178678|ref|YP_001046643.1| - 1.2e-21 77.5 15.2 1.2e-21 77.5 15.2 2.6 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|126178678|ref|YP_001046643.1| - 1.8e-12 47.4 9.3 1.8e-12 47.4 9.3 2.1 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase OppC_N PF12911.7 gi|126178678|ref|YP_001046643.1| - 5.4 7.1 8.4 28 4.8 0.0 4.1 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C Ribosomal_S10 PF00338.22 gi|126178679|ref|YP_001046644.1| - 1.1e-26 92.9 0.0 1.2e-26 92.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|126178679|ref|YP_001046644.1| - 0.016 16.0 0.1 0.033 15.0 0.0 1.6 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain GTP_EFTU PF00009.27 gi|126178680|ref|YP_001046645.1| - 1.8e-54 184.3 0.0 2.1e-54 184.0 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|126178680|ref|YP_001046645.1| - 1.1e-38 132.0 0.1 2.4e-38 130.9 0.1 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|126178680|ref|YP_001046645.1| - 1.8e-17 63.4 1.2 3.2e-16 59.5 0.7 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|126178680|ref|YP_001046645.1| - 3.7e-05 23.8 0.0 0.00031 20.8 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.6 gi|126178680|ref|YP_001046645.1| - 0.00043 20.1 1.4 0.0011 18.8 1.4 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Gtr1_RagA PF04670.12 gi|126178680|ref|YP_001046645.1| - 0.02 14.2 0.0 0.078 12.3 0.0 1.8 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region FeoB_N PF02421.18 gi|126178680|ref|YP_001046645.1| - 0.13 11.8 0.4 0.62 9.6 0.2 2.2 2 1 0 2 2 2 0 Ferrous iron transport protein B NIR_SIR PF01077.22 gi|126178682|ref|YP_001046647.1| - 6.4e-21 74.5 0.1 8.2e-21 74.2 0.1 1.1 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|126178682|ref|YP_001046647.1| - 3.7e-19 68.3 0.0 8.3e-19 67.2 0.0 1.6 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|126178682|ref|YP_001046647.1| - 7.7e-09 35.0 18.2 2.1e-06 27.3 0.7 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126178682|ref|YP_001046647.1| - 2.2e-07 30.9 37.1 4.4e-05 23.6 15.0 2.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126178682|ref|YP_001046647.1| - 1.9e-05 24.6 19.5 6.7e-05 22.8 1.0 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126178682|ref|YP_001046647.1| - 2.3e-05 24.4 14.1 0.00014 21.9 0.1 3.3 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126178682|ref|YP_001046647.1| - 3e-05 23.8 10.8 0.00018 21.4 1.6 3.4 3 1 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126178682|ref|YP_001046647.1| - 0.00011 22.7 24.6 0.0019 18.8 15.6 3.1 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126178682|ref|YP_001046647.1| - 0.0018 19.2 0.2 0.0018 19.2 0.2 3.0 3 1 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|126178682|ref|YP_001046647.1| - 0.0061 16.7 14.9 0.0061 16.7 14.9 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126178682|ref|YP_001046647.1| - 0.0066 16.9 0.0 0.0066 16.9 0.0 3.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|126178682|ref|YP_001046647.1| - 0.02 15.1 7.3 0.052 13.8 7.3 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|126178682|ref|YP_001046647.1| - 0.032 14.8 9.1 0.17 12.4 0.1 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|126178682|ref|YP_001046647.1| - 0.061 13.9 2.2 0.061 13.9 2.2 3.6 3 1 2 5 5 5 0 4Fe-4S dicluster domain GcpE PF04551.14 gi|126178682|ref|YP_001046647.1| - 0.076 12.1 0.7 0.13 11.3 0.7 1.5 1 1 0 1 1 1 0 GcpE protein Fer4_4 PF12800.7 gi|126178682|ref|YP_001046647.1| - 0.39 11.3 26.3 0.15 12.6 3.8 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|126178682|ref|YP_001046647.1| - 1.9 9.3 14.7 1.2 9.9 0.3 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain CobS PF02654.15 gi|126178683|ref|YP_001046648.1| - 1.1e-40 140.0 17.0 1.3e-40 139.8 17.0 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase PgpA PF04608.13 gi|126178684|ref|YP_001046649.1| - 3.8e-09 36.7 0.1 7e-09 35.8 0.1 1.5 1 1 1 2 2 2 1 Phosphatidylglycerophosphatase A GATase PF00117.28 gi|126178686|ref|YP_001046651.1| - 4.3e-25 88.6 0.0 5.3e-25 88.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|126178686|ref|YP_001046651.1| - 1.3e-11 44.7 1.0 7.5e-11 42.2 0.7 2.2 1 1 0 1 1 1 1 Peptidase C26 DUF5516 PF17637.2 gi|126178686|ref|YP_001046651.1| - 0.068 12.9 0.9 0.13 12.0 0.9 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5516) CxxCxxCC PF03692.15 gi|126178687|ref|YP_001046652.1| - 8.2e-12 45.6 1.3 1.1e-11 45.2 1.3 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain SapC PF07277.11 gi|126178687|ref|YP_001046652.1| - 0.072 12.7 0.0 0.085 12.4 0.0 1.3 1 0 0 1 1 1 0 SapC TraB PF01963.17 gi|126178688|ref|YP_001046653.1| - 3.8e-27 95.9 0.0 5e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 TraB family Nitroreductase PF00881.24 gi|126178689|ref|YP_001046654.1| - 5.3e-29 101.4 0.5 1.2e-13 51.4 0.0 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|126178689|ref|YP_001046654.1| - 3.6e-20 72.5 0.9 4.8e-08 32.8 0.0 3.0 1 1 2 3 3 3 3 Putative TM nitroreductase DUF2115 PF09888.9 gi|126178690|ref|YP_001046655.1| - 1.6e-52 178.3 0.0 1.9e-52 178.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) Ammonium_transp PF00909.21 gi|126178691|ref|YP_001046656.1| - 1.4e-126 422.4 39.3 1.6e-126 422.3 39.3 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.22 gi|126178692|ref|YP_001046657.1| - 1.1e-32 112.7 0.4 1.2e-32 112.5 0.4 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Bac_luciferase PF00296.20 gi|126178693|ref|YP_001046658.1| - 1.7e-47 162.4 0.2 3.6e-47 161.3 0.2 1.4 1 1 0 1 1 1 1 Luciferase-like monooxygenase RraA-like PF03737.15 gi|126178694|ref|YP_001046659.1| - 2.7e-42 144.5 5.4 2.7e-42 144.5 5.4 2.1 2 0 0 2 2 2 1 Aldolase/RraA OMPdecase PF00215.24 gi|126178694|ref|YP_001046659.1| - 1.2e-19 70.8 7.2 2.6e-19 69.7 5.8 2.2 2 1 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Trp_syntA PF00290.20 gi|126178694|ref|YP_001046659.1| - 0.00042 19.2 1.3 0.019 13.8 0.4 2.3 2 0 0 2 2 2 2 Tryptophan synthase alpha chain HMGL-like PF00682.19 gi|126178694|ref|YP_001046659.1| - 0.0084 15.7 1.3 0.049 13.2 0.2 2.1 1 1 1 2 2 2 1 HMGL-like DHO_dh PF01180.21 gi|126178694|ref|YP_001046659.1| - 0.0099 15.1 0.5 0.032 13.5 0.6 1.7 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase DUF561 PF04481.12 gi|126178694|ref|YP_001046659.1| - 0.017 14.3 2.0 0.043 13.0 0.4 2.4 3 1 0 3 3 3 0 Protein of unknown function (DUF561) ThiG PF05690.14 gi|126178694|ref|YP_001046659.1| - 0.063 12.6 4.7 0.035 13.4 2.4 1.7 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 gi|126178694|ref|YP_001046659.1| - 0.079 12.3 5.7 0.047 13.0 0.7 3.0 2 1 1 3 3 3 0 Thiamine monophosphate synthase Ribul_P_3_epim PF00834.19 gi|126178694|ref|YP_001046659.1| - 0.39 10.1 1.7 0.8 9.0 1.5 1.8 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DUF1538 PF07556.11 gi|126178695|ref|YP_001046660.1| - 1.2e-58 197.9 28.9 1.3e-58 197.8 28.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) Phage_holin_2_1 PF04971.12 gi|126178695|ref|YP_001046660.1| - 1.5 8.9 3.6 4.4 7.4 0.1 2.7 2 0 0 2 2 2 0 Bacteriophage P21 holin S DUF1538 PF07556.11 gi|126178696|ref|YP_001046661.1| - 4.6e-69 231.9 21.5 5.3e-69 231.7 21.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) DUF1616 PF07760.11 gi|126178696|ref|YP_001046661.1| - 0.81 9.0 9.2 1.5 8.1 9.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) DUF872 PF05915.12 gi|126178696|ref|YP_001046661.1| - 5.9 7.1 7.2 19 5.4 2.0 2.4 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) P-II PF00543.22 gi|126178697|ref|YP_001046662.1| - 9.9e-06 26.1 0.1 1.3e-05 25.7 0.1 1.1 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II ACT PF01842.25 gi|126178698|ref|YP_001046663.1| - 6.6e-20 70.6 0.9 1.3e-09 37.7 0.1 2.1 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|126178698|ref|YP_001046663.1| - 3.1e-09 36.5 0.2 0.00019 21.2 0.0 2.3 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|126178698|ref|YP_001046663.1| - 3.7e-09 37.0 0.1 0.0044 17.6 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.6 gi|126178698|ref|YP_001046663.1| - 0.0002 21.3 0.0 0.033 14.2 0.0 2.2 1 1 1 2 2 2 2 ACT domain AMP-binding_C_2 PF14535.6 gi|126178699|ref|YP_001046664.1| - 8.5e-33 112.5 0.4 1.9e-32 111.4 0.4 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|126178699|ref|YP_001046664.1| - 2.8e-16 59.1 0.0 4.1e-16 58.6 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C_2 PF14535.6 gi|126178700|ref|YP_001046665.1| - 9.5e-31 106.0 0.0 2.6e-30 104.6 0.0 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|126178700|ref|YP_001046665.1| - 4.1e-23 81.7 0.5 1.3e-20 73.4 0.0 2.1 2 0 0 2 2 2 2 AMP-binding enzyme GH3 PF03321.13 gi|126178700|ref|YP_001046665.1| - 0.0041 16.0 0.0 0.089 11.6 0.0 2.2 2 0 0 2 2 2 1 GH3 auxin-responsive promoter Peptidase_C42 PF05533.12 gi|126178700|ref|YP_001046665.1| - 0.071 13.1 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Beet yellows virus-type papain-like endopeptidase C42 Cas_Cas1 PF01867.16 gi|126178701|ref|YP_001046666.1| - 7.3e-44 150.0 0.0 9.3e-44 149.7 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Acylphosphatase PF00708.18 gi|126178702|ref|YP_001046667.1| - 7.7e-19 67.9 0.0 8.7e-19 67.7 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase DnaB_bind PF10410.9 gi|126178703|ref|YP_001046668.1| - 0.0075 16.4 9.9 8.3 6.7 0.1 6.4 6 1 0 6 6 6 1 DnaB-helicase binding domain of primase DUF1843 PF08898.10 gi|126178703|ref|YP_001046668.1| - 0.048 14.2 0.5 0.62 10.6 0.1 3.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1843) TPR_8 PF13181.6 gi|126178703|ref|YP_001046668.1| - 0.051 13.8 2.0 12 6.4 0.0 3.9 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|126178703|ref|YP_001046668.1| - 0.092 13.0 13.0 0.29 11.4 0.6 3.9 3 0 0 3 3 3 0 Tetratricopeptide repeat Ribosomal_L17 PF01196.19 gi|126178703|ref|YP_001046668.1| - 0.096 13.6 2.8 1.2 10.1 0.1 4.0 4 1 1 5 5 5 0 Ribosomal protein L17 TPR_14 PF13428.6 gi|126178703|ref|YP_001046668.1| - 1.3 10.0 13.2 65 4.7 0.0 7.1 6 1 1 7 7 7 0 Tetratricopeptide repeat PGM_PMM_I PF02878.16 gi|126178705|ref|YP_001046670.1| - 1.5e-40 138.1 0.1 4.5e-40 136.6 0.1 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|126178705|ref|YP_001046670.1| - 8.9e-25 87.3 0.0 1.9e-24 86.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|126178705|ref|YP_001046670.1| - 1.1e-21 77.1 0.0 2.7e-21 75.9 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|126178705|ref|YP_001046670.1| - 7.1e-12 45.3 0.2 2.2e-11 43.7 0.1 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain MoaE PF02391.17 gi|126178706|ref|YP_001046671.1| - 2.6e-18 66.3 0.2 5.4e-18 65.3 0.2 1.5 1 0 0 1 1 1 1 MoaE protein MobB PF03205.14 gi|126178706|ref|YP_001046671.1| - 3.5e-17 62.5 0.0 7.8e-17 61.4 0.0 1.6 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.23 gi|126178706|ref|YP_001046671.1| - 0.00046 20.2 0.4 0.0011 19.0 0.4 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|126178706|ref|YP_001046671.1| - 0.0021 18.6 0.3 0.004 17.7 0.3 1.7 1 1 0 1 1 1 1 ABC transporter Trans_reg_C PF00486.28 gi|126178706|ref|YP_001046671.1| - 0.049 13.7 0.2 0.94 9.6 0.0 2.8 2 1 1 3 3 3 0 Transcriptional regulatory protein, C terminal RNA_helicase PF00910.22 gi|126178706|ref|YP_001046671.1| - 0.054 13.9 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|126178706|ref|YP_001046671.1| - 0.13 12.0 0.3 0.25 11.1 0.3 1.5 1 0 0 1 1 1 0 AAA domain HHH_8 PF14716.6 gi|126178706|ref|YP_001046671.1| - 0.15 12.4 1.5 0.4 11.1 0.3 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain Tho1_MOS11_C PF18592.1 gi|126178706|ref|YP_001046671.1| - 0.15 11.9 0.6 0.36 10.7 0.6 1.6 1 0 0 1 1 1 0 Tho1/MOS11 C-terminal domain FeoB_N PF02421.18 gi|126178706|ref|YP_001046671.1| - 0.18 11.4 0.1 0.31 10.6 0.1 1.3 1 0 0 1 1 1 0 Ferrous iron transport protein B Phage_integrase PF00589.22 gi|126178708|ref|YP_001046673.1| - 2.3e-37 128.4 0.1 4e-37 127.6 0.1 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|126178708|ref|YP_001046673.1| - 3.3e-12 46.7 3.3 3.8e-12 46.5 0.9 2.4 2 2 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|126178708|ref|YP_001046673.1| - 4e-11 43.1 1.6 0.00022 21.5 0.0 2.8 3 0 0 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|126178708|ref|YP_001046673.1| - 1.1e-10 41.7 0.2 0.00046 20.5 0.1 3.3 3 0 0 3 3 3 2 Phage integrase SAM-like domain DUF3102 PF11300.8 gi|126178708|ref|YP_001046673.1| - 0.045 14.0 0.2 0.48 10.7 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3102) HTH_23 PF13384.6 gi|126178708|ref|YP_001046673.1| - 0.11 12.4 0.8 2.9 7.8 0.0 3.1 3 0 0 3 3 3 0 Homeodomain-like domain PsiB PF06290.11 gi|126178708|ref|YP_001046673.1| - 0.15 11.5 0.0 17 4.9 0.0 2.6 3 0 0 3 3 3 0 Plasmid SOS inhibition protein (PsiB) Epimerase PF01370.21 gi|126178709|ref|YP_001046674.1| - 1.1e-62 211.7 0.0 1.3e-62 211.5 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|126178709|ref|YP_001046674.1| - 2.5e-58 198.1 0.0 1.4e-57 195.6 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|126178709|ref|YP_001046674.1| - 3.8e-22 78.6 0.0 5.1e-22 78.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|126178709|ref|YP_001046674.1| - 2.3e-19 69.6 0.0 7.8e-19 67.9 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|126178709|ref|YP_001046674.1| - 1.5e-11 43.9 0.0 2.2e-11 43.4 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|126178709|ref|YP_001046674.1| - 8.5e-11 42.1 0.0 1.3e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|126178709|ref|YP_001046674.1| - 4.6e-08 32.5 0.1 5.4e-06 25.8 0.1 2.5 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 gi|126178709|ref|YP_001046674.1| - 2e-05 24.2 0.2 6.8e-05 22.4 0.1 1.9 2 1 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.13 gi|126178709|ref|YP_001046674.1| - 2.5e-05 23.9 0.0 3.9e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|126178709|ref|YP_001046674.1| - 0.0035 17.3 0.3 0.0064 16.4 0.3 1.5 1 1 0 1 1 1 1 KR domain Glyco_transf_4 PF13439.6 gi|126178709|ref|YP_001046674.1| - 0.0041 17.1 0.1 0.009 16.0 0.1 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 NAD_binding_8 PF13450.6 gi|126178709|ref|YP_001046674.1| - 0.0062 16.7 0.1 0.014 15.7 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.18 gi|126178709|ref|YP_001046674.1| - 0.012 15.8 0.1 0.026 14.8 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_2 PF03446.15 gi|126178709|ref|YP_001046674.1| - 0.022 14.9 0.1 0.057 13.6 0.0 1.7 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Rossmann-like PF10727.9 gi|126178709|ref|YP_001046674.1| - 0.027 14.4 0.2 0.053 13.4 0.2 1.6 1 0 0 1 1 1 0 Rossmann-like domain Glyco_trans_4_4 PF13579.6 gi|126178709|ref|YP_001046674.1| - 0.032 14.7 1.1 0.046 14.2 0.3 1.8 2 1 0 2 2 1 0 Glycosyl transferase 4-like domain 3HCDH_N PF02737.18 gi|126178709|ref|YP_001046674.1| - 0.039 13.8 0.0 0.075 12.9 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short_C2 PF13561.6 gi|126178709|ref|YP_001046674.1| - 0.045 13.3 0.1 0.081 12.5 0.1 1.5 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Sacchrp_dh_NADP PF03435.18 gi|126178709|ref|YP_001046674.1| - 0.049 13.9 0.1 0.076 13.3 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|126178709|ref|YP_001046674.1| - 0.068 13.8 0.0 0.13 12.9 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent TPR_2 PF07719.17 gi|126178710|ref|YP_001046675.1| - 1.5e-19 68.4 2.2 4.3e-07 29.5 0.3 3.3 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|126178710|ref|YP_001046675.1| - 1.2e-17 62.9 0.5 1.5e-06 27.7 0.2 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|126178710|ref|YP_001046675.1| - 3.4e-11 43.3 13.9 3.8e-05 23.9 3.0 3.0 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|126178710|ref|YP_001046675.1| - 8.3e-10 38.1 0.0 0.016 15.4 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|126178710|ref|YP_001046675.1| - 2e-09 37.9 13.0 0.00011 22.7 1.7 3.1 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|126178710|ref|YP_001046675.1| - 3.4e-09 36.4 1.4 0.00053 20.2 0.1 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|126178710|ref|YP_001046675.1| - 3.8e-08 32.8 2.7 0.018 15.0 0.2 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|126178710|ref|YP_001046675.1| - 4.6e-08 32.7 6.9 0.032 14.1 0.7 3.4 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_4 PF07721.14 gi|126178710|ref|YP_001046675.1| - 3e-07 30.4 7.6 0.026 15.1 0.4 3.9 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|126178710|ref|YP_001046675.1| - 7.5e-07 29.2 8.5 0.011 15.9 0.3 3.1 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|126178710|ref|YP_001046675.1| - 1.6e-06 28.4 8.3 0.015 16.1 0.4 3.3 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|126178710|ref|YP_001046675.1| - 1.9e-06 27.4 5.8 9.8e-05 22.0 0.2 3.8 3 1 1 4 4 4 2 TPR repeat TPR_19 PF14559.6 gi|126178710|ref|YP_001046675.1| - 7.3e-06 26.4 5.4 0.0077 16.7 1.8 2.2 1 1 2 3 3 3 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|126178710|ref|YP_001046675.1| - 0.0017 18.5 0.2 0.26 11.6 0.0 2.1 1 1 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 SRP_TPR_like PF17004.5 gi|126178710|ref|YP_001046675.1| - 0.047 13.7 0.0 0.33 11.0 0.0 2.0 1 1 0 1 1 1 0 Putative TPR-like repeat DUF3856 PF12968.7 gi|126178710|ref|YP_001046675.1| - 0.079 13.0 0.1 0.63 10.1 0.0 2.2 2 1 1 3 3 3 0 Domain of Unknown Function (DUF3856) Coatomer_E PF04733.14 gi|126178710|ref|YP_001046675.1| - 0.092 12.1 0.1 0.28 10.6 0.0 1.6 1 1 0 2 2 2 0 Coatomer epsilon subunit TPR_6 PF13174.6 gi|126178710|ref|YP_001046675.1| - 0.13 12.9 2.4 1.8 9.4 0.2 3.0 3 1 0 3 3 2 0 Tetratricopeptide repeat MannoseP_isomer PF01050.18 gi|126178711|ref|YP_001046676.1| - 8.6e-66 220.5 0.1 1.3e-65 219.9 0.1 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.23 gi|126178711|ref|YP_001046676.1| - 1.3e-57 195.3 0.0 1.9e-57 194.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.11 gi|126178711|ref|YP_001046676.1| - 1.1e-11 44.3 0.6 2.4e-11 43.2 0.1 1.9 2 0 0 2 2 2 1 Cupin domain NTP_transf_3 PF12804.7 gi|126178711|ref|YP_001046676.1| - 1.7e-09 38.2 0.0 7.4e-09 36.2 0.0 2.0 2 0 0 2 2 2 1 MobA-like NTP transferase domain Cupin_6 PF12852.7 gi|126178711|ref|YP_001046676.1| - 0.13 11.9 0.2 0.42 10.3 0.1 1.8 1 1 1 2 2 2 0 Cupin DUF3795 PF12675.7 gi|126178712|ref|YP_001046677.1| - 4.3e-07 30.3 22.6 2.1e-06 28.1 17.7 3.0 2 1 0 2 2 2 1 Protein of unknown function (DUF3795) zf-C3HC4_3 PF13920.6 gi|126178712|ref|YP_001046677.1| - 0.011 15.6 2.0 0.011 15.6 2.0 3.6 3 1 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) UPF0547 PF10571.9 gi|126178712|ref|YP_001046677.1| - 0.012 15.7 0.3 0.012 15.7 0.3 3.2 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 HypA PF01155.19 gi|126178712|ref|YP_001046677.1| - 0.028 14.4 0.8 0.028 14.4 0.8 2.9 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C3HC4_2 PF13923.6 gi|126178712|ref|YP_001046677.1| - 0.069 13.0 2.5 0.069 13.0 2.5 3.6 3 2 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zinc-ribbon_6 PF10005.9 gi|126178712|ref|YP_001046677.1| - 0.085 13.5 0.3 0.085 13.5 0.3 2.6 2 1 0 2 2 2 0 zinc-ribbon domain HEPN_AbiU2 PF18734.1 gi|126178712|ref|YP_001046677.1| - 0.11 11.9 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 AbiU2 DZR PF12773.7 gi|126178712|ref|YP_001046677.1| - 0.19 11.8 25.3 3.2 7.9 7.7 3.1 1 1 1 2 2 2 0 Double zinc ribbon Enolase_C PF00113.22 gi|126178713|ref|YP_001046678.1| - 7.3e-115 383.3 0.0 9.1e-115 383.0 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|126178713|ref|YP_001046678.1| - 1.8e-54 183.4 0.1 3.2e-54 182.6 0.1 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|126178713|ref|YP_001046678.1| - 1.8e-05 24.4 0.6 3.7e-05 23.4 0.1 1.7 2 0 0 2 2 2 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|126178713|ref|YP_001046678.1| - 0.0027 16.9 1.6 0.0027 16.9 0.1 1.6 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus Na_H_Exchanger PF00999.21 gi|126178714|ref|YP_001046679.1| - 1.6e-62 211.5 54.5 2.1e-62 211.1 54.5 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Fzo_mitofusin PF04799.13 gi|126178714|ref|YP_001046679.1| - 0.54 9.8 2.5 0.31 10.6 0.2 1.7 2 0 0 2 2 2 0 fzo-like conserved region DUF3488 PF11992.8 gi|126178714|ref|YP_001046679.1| - 0.92 8.4 17.2 0.0052 15.8 6.9 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF3488) Rubrerythrin PF02915.17 gi|126178715|ref|YP_001046680.1| - 3.4e-17 63.1 1.4 1.2e-16 61.4 1.4 1.7 1 1 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|126178715|ref|YP_001046680.1| - 4.1e-06 27.1 0.2 7.6e-05 23.0 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) Ferritin_2 PF13668.6 gi|126178715|ref|YP_001046680.1| - 1.4e-05 25.3 0.0 2.7e-05 24.4 0.0 1.5 1 1 0 1 1 1 1 Ferritin-like domain Ald_deCOase PF11266.8 gi|126178715|ref|YP_001046680.1| - 0.0042 16.8 0.2 0.55 9.9 0.0 2.1 2 0 0 2 2 2 2 Long-chain fatty aldehyde decarbonylase Ferritin PF00210.24 gi|126178715|ref|YP_001046680.1| - 0.015 15.2 1.1 0.73 9.8 0.1 2.1 1 1 0 2 2 2 0 Ferritin-like domain Metal_hydrol PF10118.9 gi|126178715|ref|YP_001046680.1| - 0.025 14.3 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 Predicted metal-dependent hydrolase dsDNA_bind PF01984.20 gi|126178715|ref|YP_001046680.1| - 0.08 13.2 0.0 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 Double-stranded DNA-binding domain DUF892 PF05974.12 gi|126178715|ref|YP_001046680.1| - 0.1 12.6 0.5 6.8 6.7 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF892) DUF3231 PF11553.8 gi|126178715|ref|YP_001046680.1| - 0.13 11.8 0.1 0.23 11.1 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3231) tRNA-Thr_ED PF08915.11 gi|126178716|ref|YP_001046681.1| - 8.5e-51 171.6 0.0 1.5e-50 170.8 0.0 1.4 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|126178716|ref|YP_001046681.1| - 8.7e-18 64.3 0.5 1.7e-17 63.3 0.5 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|126178716|ref|YP_001046681.1| - 1.9e-14 54.1 0.0 2e-13 50.7 0.0 2.2 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) DCD PF06559.11 gi|126178717|ref|YP_001046682.1| - 1.4e-12 47.1 0.0 1.9e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.19 gi|126178717|ref|YP_001046682.1| - 3.3e-11 43.0 0.0 5.3e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 dUTPase SpoU_methylase PF00588.19 gi|126178718|ref|YP_001046683.1| - 1.1e-27 97.0 0.0 1.4e-27 96.6 0.0 1.1 1 0 0 1 1 1 1 SpoU rRNA Methylase family PcrB PF01884.17 gi|126178719|ref|YP_001046684.1| - 1.1e-65 221.3 0.0 1.3e-65 221.0 0.0 1.0 1 0 0 1 1 1 1 PcrB family Trp_syntA PF00290.20 gi|126178719|ref|YP_001046684.1| - 0.037 12.9 0.1 0.069 12.0 0.1 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|126178719|ref|YP_001046684.1| - 0.04 13.4 0.1 0.076 12.5 0.1 1.4 1 0 0 1 1 1 0 Histidine biosynthesis protein DUF5037 PF16440.5 gi|126178719|ref|YP_001046684.1| - 0.052 13.0 0.0 0.081 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5037) Topoisom_bac PF01131.20 gi|126178720|ref|YP_001046685.1| - 2e-122 409.2 0.0 2.6e-122 408.8 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|126178720|ref|YP_001046685.1| - 1.8e-16 60.2 0.2 4.9e-16 58.8 0.2 1.8 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.6 gi|126178720|ref|YP_001046685.1| - 3.2e-13 50.1 2.0 4e-05 24.1 0.0 4.6 4 0 0 4 4 4 2 Helix-hairpin-helix domain zf-C4_Topoisom PF01396.19 gi|126178720|ref|YP_001046685.1| - 1.1e-09 37.9 0.4 2.7e-09 36.6 0.4 1.8 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger Cdd1 PF11731.8 gi|126178720|ref|YP_001046685.1| - 0.00013 22.1 0.0 0.61 10.4 0.0 2.8 2 0 0 2 2 2 2 Pathogenicity locus HTH_IclR PF09339.10 gi|126178720|ref|YP_001046685.1| - 0.029 14.2 0.1 24 4.8 0.0 4.1 4 0 0 4 4 4 0 IclR helix-turn-helix domain HHH PF00633.23 gi|126178720|ref|YP_001046685.1| - 0.037 13.9 0.1 0.2 11.6 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif tRNA_edit PF04073.15 gi|126178720|ref|YP_001046685.1| - 0.06 13.4 0.0 0.24 11.5 0.0 2.1 1 0 0 1 1 1 0 Aminoacyl-tRNA editing domain Toprim_4 PF13662.6 gi|126178720|ref|YP_001046685.1| - 0.12 12.9 0.0 0.37 11.3 0.0 1.9 1 0 0 1 1 1 0 Toprim domain Bystin PF05291.11 gi|126178720|ref|YP_001046685.1| - 0.23 10.7 0.1 0.38 10.0 0.1 1.2 1 0 0 1 1 1 0 Bystin GatB_N PF02934.15 gi|126178721|ref|YP_001046686.1| - 6.9e-103 343.8 0.0 8.6e-103 343.5 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|126178721|ref|YP_001046686.1| - 2.9e-36 124.6 0.0 4.4e-36 124.0 0.0 1.2 1 0 0 1 1 1 1 GatB domain Amidase PF01425.21 gi|126178722|ref|YP_001046687.1| - 1e-151 506.0 0.2 1.2e-151 505.7 0.2 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.15 gi|126178723|ref|YP_001046688.1| - 2.5e-14 53.3 0.1 4.3e-14 52.6 0.1 1.3 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit DUF1127 PF06568.11 gi|126178723|ref|YP_001046688.1| - 0.22 11.3 0.1 0.55 10.0 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1127) Asn_synthase PF00733.21 gi|126178724|ref|YP_001046689.1| - 1.8e-34 120.0 2.8 8.8e-20 71.7 0.4 2.1 1 1 1 2 2 2 2 Asparagine synthase NAD_synthase PF02540.17 gi|126178724|ref|YP_001046689.1| - 0.12 11.4 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 NAD synthase FmdE PF02663.14 gi|126178725|ref|YP_001046690.1| - 1.2e-13 51.2 0.0 2.9e-11 43.6 0.0 2.3 2 1 0 2 2 2 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon PD40 PF07676.12 gi|126178726|ref|YP_001046691.1| - 1.1e-34 117.6 18.5 2e-06 27.6 0.6 7.6 7 1 0 7 7 7 7 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|126178726|ref|YP_001046691.1| - 3.2e-14 52.5 0.2 0.068 11.9 0.1 6.6 2 2 3 5 5 5 5 Dipeptidyl peptidase IV (DPP IV) N-terminal region Gmad1 PF10647.9 gi|126178726|ref|YP_001046691.1| - 5.1e-09 36.3 0.9 0.00011 22.0 0.3 3.5 2 1 0 2 2 2 2 Lipoprotein LpqB beta-propeller domain DUF5050 PF16472.5 gi|126178726|ref|YP_001046691.1| - 0.00089 18.6 0.0 0.016 14.5 0.0 2.6 2 1 1 3 3 3 1 Domain of unknown function (DUF5050) Inh PF02974.14 gi|126178726|ref|YP_001046691.1| - 0.0014 18.6 0.3 28 4.8 0.1 4.8 4 2 2 6 6 6 0 Protease inhibitor Inh PGF-CTERM PF18204.1 gi|126178726|ref|YP_001046691.1| - 0.0019 18.1 0.3 0.0035 17.3 0.3 1.5 1 0 0 1 1 1 1 PGF-CTERM motif ANAPC4_WD40 PF12894.7 gi|126178726|ref|YP_001046691.1| - 0.012 15.9 0.0 13 6.2 0.0 4.1 4 1 0 4 4 4 0 Anaphase-promoting complex subunit 4 WD40 domain eIF2A PF08662.11 gi|126178726|ref|YP_001046691.1| - 0.071 13.0 0.0 1.5 8.6 0.0 2.8 1 1 1 2 2 2 0 Eukaryotic translation initiation factor eIF2A DUF3169 PF11368.8 gi|126178729|ref|YP_001046694.1| - 0.00067 19.3 0.1 0.00067 19.3 0.1 2.1 2 1 0 2 2 2 1 Protein of unknown function (DUF3169) DUF2207 PF09972.9 gi|126178729|ref|YP_001046694.1| - 0.01 14.6 4.2 0.079 11.7 0.0 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Phage_holin_3_6 PF07332.11 gi|126178729|ref|YP_001046694.1| - 0.011 15.7 10.4 0.25 11.4 3.3 2.3 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Viral_P18 PF04521.13 gi|126178729|ref|YP_001046694.1| - 0.017 14.9 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 ssRNA positive strand viral 18kD cysteine rich protein Trp_oprn_chp PF09534.10 gi|126178729|ref|YP_001046694.1| - 1.8 8.4 4.6 1.2 9.0 0.2 2.2 1 1 1 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) TssN PF17555.2 gi|126178729|ref|YP_001046694.1| - 3.4 7.0 9.0 0.41 10.0 1.0 2.1 2 0 0 2 2 2 0 Type VI secretion system, TssN HTH_45 PF14947.6 gi|126178730|ref|YP_001046695.1| - 1.2e-10 41.3 0.0 1.3e-10 41.1 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|126178730|ref|YP_001046695.1| - 0.013 15.3 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|126178730|ref|YP_001046695.1| - 0.019 15.3 0.0 0.021 15.2 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor DUF1857 PF08982.11 gi|126178730|ref|YP_001046695.1| - 0.039 13.8 0.0 0.044 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1857) HTH_27 PF13463.6 gi|126178730|ref|YP_001046695.1| - 0.083 13.4 0.0 0.1 13.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|126178730|ref|YP_001046695.1| - 0.17 11.5 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Lyase_1 PF00206.20 gi|126178731|ref|YP_001046696.1| - 9e-53 179.7 0.1 1.5e-52 179.0 0.1 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|126178731|ref|YP_001046696.1| - 2.7e-19 69.5 0.6 2.7e-19 69.5 0.6 2.2 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|126178731|ref|YP_001046696.1| - 0.00087 19.4 0.2 0.0024 17.9 0.2 1.7 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal ANTAR PF03861.14 gi|126178731|ref|YP_001046696.1| - 0.056 13.3 2.3 0.077 12.8 0.7 2.1 2 0 0 2 2 2 0 ANTAR domain ASL_C2 PF14698.6 gi|126178731|ref|YP_001046696.1| - 0.13 13.0 0.4 0.58 10.9 0.1 2.3 2 0 0 2 2 2 0 Argininosuccinate lyase C-terminal FumaraseC_C PF10415.9 gi|126178731|ref|YP_001046696.1| - 0.19 12.1 1.3 0.79 10.2 0.1 2.7 2 1 0 2 2 2 0 Fumarase C C-terminus PAS_8 PF13188.7 gi|126178732|ref|YP_001046697.1| - 1.2e-19 69.9 0.1 9.5e-06 25.5 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_9 PF13426.7 gi|126178732|ref|YP_001046697.1| - 2e-19 69.7 0.0 1e-06 28.9 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|126178732|ref|YP_001046697.1| - 2.2e-18 66.5 0.0 6.1e-06 26.5 0.0 3.9 3 1 0 3 3 3 3 PAS fold PAS PF00989.25 gi|126178732|ref|YP_001046697.1| - 2.7e-13 49.9 0.0 0.0021 18.1 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_7 PF12860.7 gi|126178732|ref|YP_001046697.1| - 4.3e-09 36.5 0.4 1.4e-05 25.2 0.3 3.8 3 1 0 3 3 3 1 PAS fold HTH_IclR PF09339.10 gi|126178732|ref|YP_001046697.1| - 5.3e-07 29.3 0.0 1.2e-06 28.2 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|126178732|ref|YP_001046697.1| - 1.1e-06 28.5 0.1 2.1e-05 24.4 0.0 2.5 2 0 0 2 2 2 1 HTH domain HTH_23 PF13384.6 gi|126178732|ref|YP_001046697.1| - 4.4e-06 26.3 0.0 1.9e-05 24.3 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.6 gi|126178732|ref|YP_001046697.1| - 6.1e-06 25.7 0.1 1.9e-05 24.1 0.1 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|126178732|ref|YP_001046697.1| - 1.8e-05 24.5 0.1 4.3e-05 23.3 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|126178732|ref|YP_001046697.1| - 0.00038 20.5 0.0 0.0011 19.0 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|126178732|ref|YP_001046697.1| - 0.0004 20.2 0.0 0.0014 18.5 0.0 1.9 2 0 0 2 2 1 1 MarR family HTH_29 PF13551.6 gi|126178732|ref|YP_001046697.1| - 0.00075 19.5 0.1 0.028 14.4 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn helix TrmB PF01978.19 gi|126178732|ref|YP_001046697.1| - 0.0011 18.8 0.0 0.0026 17.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|126178732|ref|YP_001046697.1| - 0.0012 18.8 0.1 0.0078 16.1 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.6 gi|126178732|ref|YP_001046697.1| - 0.0012 18.5 0.0 0.0031 17.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_40 PF14493.6 gi|126178732|ref|YP_001046697.1| - 0.0016 18.8 0.0 0.022 15.2 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|126178732|ref|YP_001046697.1| - 0.0036 17.2 0.1 0.015 15.3 0.1 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|126178732|ref|YP_001046697.1| - 0.006 16.6 0.0 0.019 15.0 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix TetR_N PF00440.23 gi|126178732|ref|YP_001046697.1| - 0.0076 16.0 0.0 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Sigma70_r4_2 PF08281.12 gi|126178732|ref|YP_001046697.1| - 0.0091 15.7 0.1 0.11 12.2 0.0 2.6 3 0 0 3 3 2 1 Sigma-70, region 4 DUF977 PF06163.11 gi|126178732|ref|YP_001046697.1| - 0.012 15.6 0.0 0.078 12.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF977) RPA_C PF08784.11 gi|126178732|ref|YP_001046697.1| - 0.013 16.1 0.0 0.031 14.9 0.0 1.6 1 0 0 1 1 1 0 Replication protein A C terminal Rrf2 PF02082.20 gi|126178732|ref|YP_001046697.1| - 0.018 15.4 0.0 0.037 14.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_45 PF14947.6 gi|126178732|ref|YP_001046697.1| - 0.031 14.3 0.0 0.08 12.9 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix TBPIP PF07106.13 gi|126178732|ref|YP_001046697.1| - 0.033 14.1 0.0 0.09 12.7 0.0 1.7 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain HTH_28 PF13518.6 gi|126178732|ref|YP_001046697.1| - 0.048 13.8 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|126178732|ref|YP_001046697.1| - 0.075 13.3 0.1 0.21 11.8 0.1 1.8 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|126178732|ref|YP_001046697.1| - 0.1 12.5 0.1 0.34 10.8 0.1 2.0 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|126178732|ref|YP_001046697.1| - 0.11 12.5 0.0 0.35 10.9 0.0 1.9 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_41 PF14502.6 gi|126178732|ref|YP_001046697.1| - 0.11 12.2 0.1 0.3 10.8 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|126178732|ref|YP_001046697.1| - 0.12 12.3 0.0 0.36 10.8 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_10 PF04967.12 gi|126178732|ref|YP_001046697.1| - 0.13 12.1 0.4 0.45 10.4 0.0 2.1 2 0 0 2 2 2 0 HTH DNA binding domain HTH_17 PF12728.7 gi|126178732|ref|YP_001046697.1| - 0.15 12.3 0.0 6.7 7.0 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix domain Phage_NinH PF06322.11 gi|126178732|ref|YP_001046697.1| - 0.18 11.7 0.0 0.39 10.6 0.0 1.5 1 0 0 1 1 1 0 Phage NinH protein Penicillinase_R PF03965.16 gi|126178732|ref|YP_001046697.1| - 0.18 12.1 0.0 0.74 10.2 0.0 2.0 2 0 0 2 2 2 0 Penicillinase repressor TnsD PF15978.5 gi|126178732|ref|YP_001046697.1| - 0.22 10.5 0.0 0.36 9.7 0.0 1.3 1 0 0 1 1 1 0 Tn7-like transposition protein D Bac_luciferase PF00296.20 gi|126178733|ref|YP_001046698.1| - 4.4e-68 230.0 0.1 4.9e-68 229.9 0.1 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Cupin_2 PF07883.11 gi|126178734|ref|YP_001046699.1| - 4e-14 52.1 0.1 5.3e-14 51.7 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|126178734|ref|YP_001046699.1| - 1.9e-06 27.8 0.0 2.6e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|126178734|ref|YP_001046699.1| - 2.2e-05 24.1 0.0 3.3e-05 23.5 0.0 1.3 1 1 0 1 1 1 1 Cupin Cupin_7 PF12973.7 gi|126178734|ref|YP_001046699.1| - 0.0029 17.5 0.0 0.0037 17.2 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_3 PF05899.12 gi|126178734|ref|YP_001046699.1| - 0.0077 15.9 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DMSP_lyase PF16867.5 gi|126178734|ref|YP_001046699.1| - 0.11 12.1 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase CorA PF01544.18 gi|126178735|ref|YP_001046700.1| - 2.4e-63 214.2 0.0 2.9e-63 213.9 0.0 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein MscS_TM PF12794.7 gi|126178735|ref|YP_001046700.1| - 0.051 12.4 0.0 0.078 11.8 0.0 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 EamA PF00892.20 gi|126178735|ref|YP_001046700.1| - 0.073 13.2 1.8 0.089 13.0 0.5 1.8 2 0 0 2 2 2 0 EamA-like transporter family MS_channel PF00924.18 gi|126178736|ref|YP_001046701.1| - 2.4e-32 112.2 7.2 1e-31 110.1 7.2 1.8 1 1 0 1 1 1 1 Mechanosensitive ion channel DUF1624 PF07786.12 gi|126178736|ref|YP_001046701.1| - 0.26 10.8 8.6 0.45 10.0 8.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1624) CorA PF01544.18 gi|126178737|ref|YP_001046702.1| - 3e-76 256.5 0.0 3.6e-76 256.3 0.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein MscS_TM PF12794.7 gi|126178737|ref|YP_001046702.1| - 0.031 13.2 0.3 0.048 12.5 0.3 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 T2SSF PF00482.23 gi|126178737|ref|YP_001046702.1| - 1.7 8.6 5.8 0.4 10.6 0.1 2.5 3 0 0 3 3 3 0 Type II secretion system (T2SS), protein F Yip1 PF04893.17 gi|126178738|ref|YP_001046703.1| - 0.0021 17.8 3.3 0.0024 17.6 3.3 1.0 1 0 0 1 1 1 1 Yip1 domain Abhydrolase_9_N PF15420.6 gi|126178738|ref|YP_001046703.1| - 0.0053 16.8 2.7 0.0059 16.6 2.7 1.0 1 0 0 1 1 1 1 Alpha/beta-hydrolase family N-terminus Saf_2TM PF18303.1 gi|126178738|ref|YP_001046703.1| - 0.011 15.4 1.7 0.013 15.1 1.7 1.1 1 0 0 1 1 1 0 SAVED-fused 2TM effector domain Colicin_V PF02674.16 gi|126178738|ref|YP_001046703.1| - 0.012 15.6 5.6 0.013 15.4 5.6 1.0 1 0 0 1 1 1 0 Colicin V production protein Phage_holin_3_6 PF07332.11 gi|126178738|ref|YP_001046703.1| - 0.032 14.3 7.5 0.039 14.0 7.5 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2973 PF11189.8 gi|126178738|ref|YP_001046703.1| - 0.061 13.4 2.7 0.19 11.9 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2973) TPPK_C PF12555.8 gi|126178738|ref|YP_001046703.1| - 2.4 8.3 16.3 1.1 9.4 2.4 2.1 1 1 1 2 2 2 0 Thiamine pyrophosphokinase C terminal Helicase_C_2 PF13307.6 gi|126178739|ref|YP_001046704.1| - 2.8e-33 115.5 0.0 6.4e-33 114.3 0.0 1.6 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|126178739|ref|YP_001046704.1| - 1.3e-14 54.2 0.6 1.5e-11 44.2 0.0 2.7 2 1 0 2 2 2 2 DEAD_2 HBB PF06777.11 gi|126178739|ref|YP_001046704.1| - 2.6e-11 43.6 0.0 4.8e-11 42.7 0.0 1.4 1 0 0 1 1 1 1 Helical and beta-bridge domain ResIII PF04851.15 gi|126178739|ref|YP_001046704.1| - 9.8e-06 25.7 0.0 0.029 14.4 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|126178739|ref|YP_001046704.1| - 0.0033 17.2 0.1 0.14 11.9 0.0 2.8 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_16 PF13191.6 gi|126178739|ref|YP_001046704.1| - 0.0033 17.8 0.6 0.011 16.1 0.1 2.1 3 0 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|126178739|ref|YP_001046704.1| - 0.0037 17.5 0.5 0.82 9.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|126178739|ref|YP_001046704.1| - 0.11 12.2 1.2 0.18 11.5 0.0 2.0 3 0 0 3 3 3 0 AAA domain DNA_binding_1 PF01035.20 gi|126178740|ref|YP_001046705.1| - 2.1e-25 88.7 0.1 3e-25 88.1 0.1 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain ApbA_C PF08546.11 gi|126178741|ref|YP_001046706.1| - 4.2e-34 117.5 0.0 6.5e-34 116.8 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|126178741|ref|YP_001046706.1| - 1.3e-25 89.8 0.0 1.9e-25 89.3 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|126178741|ref|YP_001046706.1| - 0.0011 19.0 0.1 0.0094 15.9 0.1 2.2 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|126178741|ref|YP_001046706.1| - 0.024 15.2 0.1 0.1 13.2 0.1 2.1 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 gi|126178741|ref|YP_001046706.1| - 0.039 14.5 0.6 0.17 12.5 0.4 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|126178741|ref|YP_001046706.1| - 0.041 14.1 0.3 0.12 12.6 0.3 1.8 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Thi4 PF01946.17 gi|126178741|ref|YP_001046706.1| - 0.071 12.3 0.4 0.8 8.9 0.1 2.1 2 0 0 2 2 2 0 Thi4 family DAO PF01266.24 gi|126178741|ref|YP_001046706.1| - 0.25 10.9 6.2 1.6 8.2 6.2 2.3 1 1 0 1 1 1 0 FAD dependent oxidoreductase NTP_transf_3 PF12804.7 gi|126178742|ref|YP_001046707.1| - 1.8e-27 96.7 0.2 2.2e-27 96.4 0.2 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|126178742|ref|YP_001046707.1| - 0.023 14.4 0.0 0.032 14.0 0.0 1.1 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase WD40 PF00400.32 gi|126178744|ref|YP_001046709.1| - 3.3e-13 49.9 2.5 0.085 13.8 0.1 6.3 6 1 0 6 6 6 3 WD domain, G-beta repeat PQQ_2 PF13360.6 gi|126178744|ref|YP_001046709.1| - 1.7e-12 47.5 4.1 6.7e-08 32.4 1.3 2.3 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|126178744|ref|YP_001046709.1| - 1.5e-09 38.1 18.2 0.0076 16.7 0.1 7.1 6 1 1 7 7 7 4 PQQ-like domain PQQ PF01011.21 gi|126178744|ref|YP_001046709.1| - 2.1e-08 33.7 10.6 0.02 14.8 0.0 6.8 7 0 0 7 7 7 2 PQQ enzyme repeat ANAPC4_WD40 PF12894.7 gi|126178744|ref|YP_001046709.1| - 3.3e-07 30.5 0.0 0.095 13.0 0.0 4.9 1 1 3 5 5 5 2 Anaphase-promoting complex subunit 4 WD40 domain GXGXG PF01493.19 gi|126178744|ref|YP_001046709.1| - 0.094 12.3 0.1 1.2 8.7 0.0 2.4 2 1 0 2 2 2 0 GXGXG motif Gtr1_RagA PF04670.12 gi|126178744|ref|YP_001046709.1| - 0.095 12.0 0.0 2.7 7.3 0.0 2.3 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region NHL PF01436.21 gi|126178744|ref|YP_001046709.1| - 0.11 12.6 1.2 73 3.7 0.0 4.6 5 0 0 5 5 5 0 NHL repeat Me-amine-dh_H PF06433.11 gi|126178744|ref|YP_001046709.1| - 0.12 11.2 0.2 1 8.2 0.0 2.4 3 0 0 3 3 3 0 Methylamine dehydrogenase heavy chain (MADH) DHODB_Fe-S_bind PF10418.9 gi|126178745|ref|YP_001046710.1| - 3.4e-13 49.2 8.4 5.6e-12 45.3 5.6 2.3 2 0 0 2 2 2 2 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|126178745|ref|YP_001046710.1| - 0.00034 21.2 0.2 0.0013 19.4 0.2 1.9 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|126178745|ref|YP_001046710.1| - 0.06 13.7 0.0 0.72 10.2 0.0 2.2 1 1 0 1 1 1 0 Oxidoreductase FAD-binding domain PQQ_3 PF13570.6 gi|126178745|ref|YP_001046710.1| - 2.7 8.6 4.9 2.5 8.7 1.6 2.4 3 0 0 3 3 3 0 PQQ-like domain DHO_dh PF01180.21 gi|126178746|ref|YP_001046711.1| - 1.7e-51 175.2 0.1 2.4e-51 174.7 0.1 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|126178746|ref|YP_001046711.1| - 7.6e-08 31.8 0.3 0.00017 20.8 0.0 2.0 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|126178746|ref|YP_001046711.1| - 9e-06 25.3 3.1 9e-06 25.3 3.1 1.6 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|126178746|ref|YP_001046711.1| - 0.00021 20.8 0.1 0.00021 20.8 0.1 2.1 3 0 0 3 3 3 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|126178746|ref|YP_001046711.1| - 0.015 14.3 0.8 0.035 13.1 0.8 1.5 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Trp_syntA PF00290.20 gi|126178746|ref|YP_001046711.1| - 0.019 13.8 0.4 0.038 12.8 0.1 1.6 2 0 0 2 2 2 0 Tryptophan synthase alpha chain DUF561 PF04481.12 gi|126178746|ref|YP_001046711.1| - 0.035 13.3 0.7 0.062 12.5 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) G3P_antiterm PF04309.12 gi|126178746|ref|YP_001046711.1| - 0.058 12.8 0.5 0.19 11.1 0.1 2.0 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator IGPS PF00218.21 gi|126178746|ref|YP_001046711.1| - 0.06 12.5 0.0 0.09 11.9 0.0 1.2 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase Ldh_1_N PF00056.23 gi|126178747|ref|YP_001046712.1| - 7.4e-19 68.2 0.0 1e-18 67.8 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|126178747|ref|YP_001046712.1| - 1.7e-12 47.6 0.0 4.2e-12 46.3 0.0 1.6 2 0 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|126178747|ref|YP_001046712.1| - 0.013 15.1 0.7 0.23 11.0 0.7 2.1 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|126178747|ref|YP_001046712.1| - 0.041 13.2 0.0 0.06 12.7 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|126178747|ref|YP_001046712.1| - 0.13 12.9 0.0 0.26 11.9 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DNA_pol_B PF00136.21 gi|126178748|ref|YP_001046713.1| - 2e-44 152.1 0.0 3.2e-44 151.4 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|126178748|ref|YP_001046713.1| - 7.6e-31 107.5 0.0 7.5e-30 104.2 0.0 2.4 2 1 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|126178748|ref|YP_001046713.1| - 0.0023 17.9 0.0 0.014 15.4 0.0 2.3 2 1 0 2 2 2 1 RNase_H superfamily DNA_pol_B_2 PF03175.13 gi|126178748|ref|YP_001046713.1| - 0.11 11.4 0.1 0.83 8.4 0.0 2.3 3 0 0 3 3 3 0 DNA polymerase type B, organellar and viral MG2 PF01835.19 gi|126178750|ref|YP_001046715.1| - 0.023 15.1 0.1 0.083 13.4 0.0 1.9 1 1 1 2 2 2 0 MG2 domain MG2 PF01835.19 gi|126178751|ref|YP_001046716.1| - 0.04 14.4 0.1 0.094 13.2 0.0 1.7 2 0 0 2 2 2 0 MG2 domain NAD_binding_2 PF03446.15 gi|126178752|ref|YP_001046717.1| - 0.048 13.8 0.0 0.061 13.5 0.0 1.1 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF4873 PF16170.5 gi|126178752|ref|YP_001046717.1| - 0.054 13.7 0.2 0.63 10.3 0.0 2.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4873) Mrr_cat PF04471.12 gi|126178752|ref|YP_001046717.1| - 0.089 12.8 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease Peptidase_S3 PF00944.19 gi|126178753|ref|YP_001046718.1| - 0.024 14.5 0.0 0.035 13.9 0.0 1.3 1 0 0 1 1 1 0 Alphavirus core protein PKcGMP_CC PF16808.5 gi|126178753|ref|YP_001046718.1| - 0.027 14.3 0.2 0.059 13.2 0.2 1.5 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase FapA PF03961.13 gi|126178754|ref|YP_001046719.1| - 0.13 10.9 7.0 0.19 10.3 7.0 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A Bactofilin PF04519.13 gi|126178754|ref|YP_001046719.1| - 0.23 11.8 11.2 0.65 10.3 1.3 2.6 1 1 1 2 2 2 0 Polymer-forming cytoskeletal Phage_spike PF18715.1 gi|126178754|ref|YP_001046719.1| - 0.39 10.8 0.1 0.39 10.8 0.1 2.9 2 1 0 2 2 2 0 Phage spike trimer ABC2_membrane_3 PF12698.7 gi|126178754|ref|YP_001046719.1| - 4.1 6.4 15.3 6.8 5.7 15.3 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2070 PF09843.9 gi|126178754|ref|YP_001046719.1| - 4.1 5.6 13.9 5.5 5.2 13.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Methyltransf_31 PF13847.6 gi|126178755|ref|YP_001046720.1| - 5.1e-07 29.6 0.0 9.3e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|126178755|ref|YP_001046720.1| - 4.7e-06 26.5 0.0 8.1e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.10 gi|126178755|ref|YP_001046720.1| - 5.2e-06 25.9 0.0 7.5e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_25 PF13649.6 gi|126178755|ref|YP_001046720.1| - 8.3e-05 23.2 0.0 0.00019 22.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|126178755|ref|YP_001046720.1| - 0.0047 16.5 0.0 0.041 13.4 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|126178755|ref|YP_001046720.1| - 0.062 14.0 0.0 0.16 12.7 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain POR PF01558.18 gi|126178756|ref|YP_001046721.1| - 1.9e-39 135.6 0.0 2.2e-39 135.4 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|126178757|ref|YP_001046722.1| - 1.1e-27 96.7 0.2 3.3e-27 95.1 0.1 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Fer4 PF00037.27 gi|126178757|ref|YP_001046722.1| - 6.4e-11 41.6 11.8 2.9e-05 23.7 5.4 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain POR_N PF01855.19 gi|126178757|ref|YP_001046722.1| - 3.1e-10 40.2 0.0 1e-09 38.5 0.0 1.9 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4_9 PF13187.6 gi|126178757|ref|YP_001046722.1| - 1.1e-05 25.5 10.6 1.1e-05 25.5 10.6 2.3 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126178757|ref|YP_001046722.1| - 1.4e-05 24.9 3.7 1.4e-05 24.9 3.7 3.9 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|126178757|ref|YP_001046722.1| - 2.1e-05 24.4 21.1 0.0035 17.4 2.2 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126178757|ref|YP_001046722.1| - 5.5e-05 23.7 13.4 0.011 16.4 1.5 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126178757|ref|YP_001046722.1| - 7.3e-05 22.8 10.8 0.00041 20.4 10.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126178757|ref|YP_001046722.1| - 8.6e-05 22.6 12.7 0.00077 19.5 13.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126178757|ref|YP_001046722.1| - 0.00024 22.0 8.3 0.0042 18.0 1.5 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|126178757|ref|YP_001046722.1| - 0.00065 20.0 12.7 0.0051 17.2 2.3 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|126178757|ref|YP_001046722.1| - 0.11 13.0 11.2 1.1 9.9 1.2 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|126178757|ref|YP_001046722.1| - 0.12 13.0 11.9 0.66 10.6 1.9 2.8 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|126178757|ref|YP_001046722.1| - 0.29 11.9 9.7 4.3 8.1 1.5 3.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain DAHP_snth_FXD PF18152.1 gi|126178757|ref|YP_001046722.1| - 0.89 9.4 4.5 9.5 6.1 0.1 2.9 3 0 0 3 3 3 0 DAHP synthase ferredoxin-like domain Fer4_8 PF13183.6 gi|126178757|ref|YP_001046722.1| - 0.92 10.0 13.5 4.6e+03 -1.8 13.6 2.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126178757|ref|YP_001046722.1| - 5.4 8.2 16.3 15 6.8 6.6 3.2 2 0 0 2 2 2 0 4Fe-4S binding domain Xan_ur_permease PF00860.20 gi|126178758|ref|YP_001046723.1| - 1.4e-33 116.2 43.3 1.4e-33 116.2 43.3 1.9 2 0 0 2 2 2 2 Permease family ABC_tran PF00005.27 gi|126178759|ref|YP_001046724.1| - 3e-27 95.8 0.0 4.4e-27 95.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126178759|ref|YP_001046724.1| - 2.7e-12 47.1 0.5 1.7e-07 31.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|126178759|ref|YP_001046724.1| - 0.00064 20.4 0.0 0.0011 19.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|126178759|ref|YP_001046724.1| - 0.032 14.0 0.1 0.098 12.4 0.0 1.9 1 1 1 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|126178759|ref|YP_001046724.1| - 0.05 14.1 0.0 0.076 13.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|126178759|ref|YP_001046724.1| - 0.071 12.8 0.0 4.1 7.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain MeaB PF03308.16 gi|126178759|ref|YP_001046724.1| - 0.11 11.4 0.1 0.25 10.3 0.1 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 gi|126178759|ref|YP_001046724.1| - 0.15 12.5 0.1 1.3 9.5 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|126178759|ref|YP_001046724.1| - 0.17 12.1 0.0 6.4 7.0 0.0 2.4 2 1 0 2 2 2 0 AAA domain ABC2_membrane_2 PF12679.7 gi|126178760|ref|YP_001046725.1| - 4.8e-11 42.5 19.5 2.3e-10 40.2 18.3 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.13 gi|126178760|ref|YP_001046725.1| - 4.7e-07 29.5 16.8 6.2e-07 29.1 16.8 1.2 1 0 0 1 1 1 1 CcmB protein ABC2_membrane_4 PF12730.7 gi|126178760|ref|YP_001046725.1| - 1e-05 25.6 7.4 1.4e-05 25.1 6.7 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|126178760|ref|YP_001046725.1| - 2.7e-05 23.4 7.5 2.7e-05 23.4 7.5 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein tRNA-synt_2b PF00587.25 gi|126178761|ref|YP_001046726.1| - 2.2e-38 132.0 0.1 3.3e-38 131.5 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|126178761|ref|YP_001046726.1| - 1.3e-22 80.1 0.8 2.1e-22 79.4 0.8 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain CENP-F_leu_zip PF10473.9 gi|126178761|ref|YP_001046726.1| - 0.14 12.2 0.3 0.24 11.4 0.3 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Oxidored_q2 PF00420.24 gi|126178762|ref|YP_001046727.1| - 0.031 13.9 2.0 0.045 13.4 2.0 1.2 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Ferredoxin_N PF16947.5 gi|126178763|ref|YP_001046728.1| - 0.0062 16.6 0.3 0.018 15.1 0.2 1.8 1 1 0 1 1 1 1 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding ABC-3 PF00950.17 gi|126178764|ref|YP_001046729.1| - 2e-77 260.2 33.4 2.4e-77 259.9 33.4 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|126178764|ref|YP_001046729.1| - 1.1e-07 31.2 32.9 1.8e-07 30.5 32.9 1.5 1 1 0 1 1 1 1 FecCD transport family TPPK_C PF12555.8 gi|126178764|ref|YP_001046729.1| - 0.012 15.7 2.3 0.012 15.7 2.3 4.3 4 0 0 4 4 4 0 Thiamine pyrophosphokinase C terminal DUF975 PF06161.11 gi|126178764|ref|YP_001046729.1| - 1.7 8.4 16.5 0.83 9.4 14.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF975) ABC_tran PF00005.27 gi|126178765|ref|YP_001046730.1| - 3.1e-30 105.5 0.0 4.4e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126178765|ref|YP_001046730.1| - 1.1e-10 41.9 0.4 2.7e-05 24.1 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|126178765|ref|YP_001046730.1| - 3.9e-05 23.4 0.0 8.8e-05 22.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|126178765|ref|YP_001046730.1| - 0.00035 21.0 0.8 0.0072 16.8 0.8 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|126178765|ref|YP_001046730.1| - 0.00067 19.2 0.0 0.0062 16.0 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|126178765|ref|YP_001046730.1| - 0.0012 18.5 0.0 0.0027 17.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|126178765|ref|YP_001046730.1| - 0.0013 19.3 0.0 0.0019 18.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|126178765|ref|YP_001046730.1| - 0.012 15.3 0.0 0.018 14.8 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 gi|126178765|ref|YP_001046730.1| - 0.019 14.6 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|126178765|ref|YP_001046730.1| - 0.029 14.1 0.1 2.7 7.7 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|126178765|ref|YP_001046730.1| - 0.03 14.6 0.1 0.19 12.0 0.1 2.0 2 1 1 3 3 3 0 AAA domain RsgA_GTPase PF03193.16 gi|126178765|ref|YP_001046730.1| - 0.063 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase ATPase_2 PF01637.18 gi|126178765|ref|YP_001046730.1| - 0.087 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|126178765|ref|YP_001046730.1| - 0.12 12.8 0.1 0.22 11.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|126178765|ref|YP_001046730.1| - 0.29 11.4 1.7 0.94 9.7 0.2 2.2 2 1 0 2 2 2 0 AAA domain ZnuA PF01297.17 gi|126178766|ref|YP_001046731.1| - 6.9e-62 209.2 0.0 8.5e-62 208.9 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic Fe_dep_repr_C PF02742.15 gi|126178767|ref|YP_001046732.1| - 4.4e-14 52.3 0.4 7.4e-14 51.6 0.4 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|126178767|ref|YP_001046732.1| - 7.1e-11 42.1 0.2 1e-10 41.6 0.2 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|126178767|ref|YP_001046732.1| - 5.9e-05 22.9 0.0 0.00018 21.3 0.0 1.7 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|126178767|ref|YP_001046732.1| - 0.00043 20.1 0.0 0.0011 18.9 0.0 1.6 2 0 0 2 2 2 1 MarR family FaeA PF04703.12 gi|126178767|ref|YP_001046732.1| - 0.0018 18.6 0.1 0.0032 17.8 0.1 1.4 1 0 0 1 1 1 1 FaeA-like protein HTH_Crp_2 PF13545.6 gi|126178767|ref|YP_001046732.1| - 0.003 17.5 0.0 0.0078 16.2 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|126178767|ref|YP_001046732.1| - 0.0078 16.5 0.0 0.02 15.2 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_DeoR PF08220.12 gi|126178767|ref|YP_001046732.1| - 0.016 14.9 0.0 0.037 13.8 0.0 1.6 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Rio2_N PF09202.11 gi|126178767|ref|YP_001046732.1| - 0.028 14.6 0.0 0.1 12.8 0.0 1.8 1 1 1 2 2 2 0 Rio2, N-terminal HTH_11 PF08279.12 gi|126178767|ref|YP_001046732.1| - 0.033 14.1 0.0 0.23 11.4 0.0 2.3 2 0 0 2 2 2 0 HTH domain GntR PF00392.21 gi|126178767|ref|YP_001046732.1| - 0.037 13.7 0.0 0.061 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|126178767|ref|YP_001046732.1| - 0.047 13.5 0.2 7.7 6.4 0.1 2.2 2 0 0 2 2 2 0 Homeodomain-like domain Radical_SAM PF04055.21 gi|126178768|ref|YP_001046733.1| - 3.6e-20 73.0 0.0 5.7e-20 72.4 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.20 gi|126178768|ref|YP_001046733.1| - 5.1e-08 32.9 0.1 9.8e-08 32.0 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 DUF108 PF01958.18 gi|126178769|ref|YP_001046734.1| - 8.2e-30 103.0 0.0 1.5e-29 102.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|126178769|ref|YP_001046734.1| - 5.1e-13 49.7 0.0 1.3e-12 48.4 0.0 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|126178769|ref|YP_001046734.1| - 0.00048 20.9 0.1 0.00087 20.1 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GPHH PF16905.5 gi|126178769|ref|YP_001046734.1| - 0.045 13.5 0.0 0.89 9.4 0.0 2.7 3 0 0 3 3 3 0 Voltage-dependent L-type calcium channel, IQ-associated NadA PF02445.16 gi|126178770|ref|YP_001046735.1| - 1.8e-102 342.6 0.0 2e-102 342.4 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein QRPTase_C PF01729.19 gi|126178771|ref|YP_001046736.1| - 2.3e-49 167.4 0.8 3.1e-49 167.0 0.8 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|126178771|ref|YP_001046736.1| - 9.6e-26 89.7 0.0 1.8e-25 88.8 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Glu_synthase PF01645.17 gi|126178771|ref|YP_001046736.1| - 0.44 9.6 3.3 0.5 9.4 0.6 2.1 1 1 1 2 2 2 0 Conserved region in glutamate synthase HEAT_2 PF13646.6 gi|126178773|ref|YP_001046738.1| - 5.7e-34 116.4 7.4 6.8e-14 52.0 1.0 3.0 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.16 gi|126178773|ref|YP_001046738.1| - 9.3e-27 91.0 13.8 2.2e-08 34.0 0.1 4.7 5 0 0 5 5 5 4 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|126178773|ref|YP_001046738.1| - 6e-19 66.5 1.6 0.00015 21.7 0.0 5.1 5 0 0 5 5 5 3 HEAT repeat HEAT_EZ PF13513.6 gi|126178773|ref|YP_001046738.1| - 2.4e-14 53.5 9.9 9.2e-05 22.9 0.1 4.6 4 1 1 5 5 5 3 HEAT-like repeat Arm PF00514.23 gi|126178773|ref|YP_001046738.1| - 3.4e-12 45.9 1.2 8.4e-07 28.8 0.0 4.1 3 1 1 4 4 4 2 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|126178773|ref|YP_001046738.1| - 5.3e-05 23.3 0.0 0.11 12.6 0.0 3.4 1 1 2 3 3 3 2 non-SMC mitotic condensation complex subunit 1 Aconitase_B_N PF11791.8 gi|126178773|ref|YP_001046738.1| - 0.0059 16.7 0.0 0.67 10.0 0.0 2.2 2 0 0 2 2 2 1 Aconitate B N-terminal domain DSX_dimer PF08828.10 gi|126178773|ref|YP_001046738.1| - 0.022 14.4 0.2 1.6 8.4 0.0 2.2 1 1 1 2 2 2 0 Doublesex dimerisation domain Vac14_Fab1_bd PF12755.7 gi|126178773|ref|YP_001046738.1| - 0.04 14.5 0.0 45 4.7 0.0 3.3 2 1 0 2 2 2 0 Vacuolar 14 Fab1-binding region IFRD PF05004.13 gi|126178773|ref|YP_001046738.1| - 0.051 12.7 0.0 0.92 8.5 0.0 2.8 2 2 1 3 3 3 0 Interferon-related developmental regulator (IFRD) DUF2019 PF09450.10 gi|126178773|ref|YP_001046738.1| - 0.055 13.4 0.2 4.7 7.2 0.1 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF2019) dCMP_cyt_deam_1 PF00383.23 gi|126178774|ref|YP_001046739.1| - 1.3e-19 69.9 0.0 1.6e-19 69.6 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|126178774|ref|YP_001046739.1| - 2.6e-18 66.1 0.0 3.3e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 gi|126178774|ref|YP_001046739.1| - 0.00085 19.4 0.2 0.26 11.4 0.8 2.1 1 1 1 2 2 2 2 Bd3614-like deaminase SNAD4 PF18750.1 gi|126178774|ref|YP_001046739.1| - 0.01 15.9 0.0 0.022 14.9 0.0 1.5 2 0 0 2 2 2 0 Secreted Novel AID/APOBEC-like Deaminase 4 APOBEC_N PF08210.11 gi|126178774|ref|YP_001046739.1| - 0.22 11.4 0.0 0.31 10.9 0.0 1.3 1 1 0 1 1 1 0 APOBEC-like N-terminal domain AAL_decarboxy PF03306.13 gi|126178775|ref|YP_001046740.1| - 2.6e-82 275.4 0.0 2.9e-82 275.2 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase Usp PF00582.26 gi|126178776|ref|YP_001046741.1| - 3.9e-15 56.6 0.2 4.5e-07 30.5 0.1 2.0 2 0 0 2 2 2 2 Universal stress protein family CitMHS PF03600.16 gi|126178777|ref|YP_001046742.1| - 1.5e-50 172.1 36.4 1.5e-50 172.1 36.4 1.9 1 1 1 2 2 2 1 Citrate transporter ArsB PF02040.15 gi|126178777|ref|YP_001046742.1| - 1.9e-14 53.9 32.7 2.6e-14 53.4 32.7 1.2 1 0 0 1 1 1 1 Arsenical pump membrane protein NhaB PF06450.12 gi|126178777|ref|YP_001046742.1| - 0.00012 21.1 5.1 0.00012 21.1 5.1 3.1 3 1 0 3 3 3 1 Bacterial Na+/H+ antiporter B (NhaB) Usp PF00582.26 gi|126178778|ref|YP_001046743.1| - 5.6e-05 23.7 0.1 8.2e-05 23.1 0.1 1.2 1 0 0 1 1 1 1 Universal stress protein family HARP PF07443.13 gi|126178778|ref|YP_001046743.1| - 0.0036 16.9 0.0 0.0069 16.0 0.0 1.5 1 0 0 1 1 1 1 HepA-related protein (HARP) HEAT_PBS PF03130.16 gi|126178778|ref|YP_001046743.1| - 0.014 16.0 0.1 0.073 13.8 0.0 2.2 1 1 1 2 2 2 0 PBS lyase HEAT-like repeat DUF1372 PF07116.11 gi|126178778|ref|YP_001046743.1| - 0.15 12.3 0.1 0.66 10.2 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1372) Peptidase_M54 PF07998.11 gi|126178779|ref|YP_001046744.1| - 2.6e-22 79.8 0.0 3.1e-22 79.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_3 PF13582.6 gi|126178779|ref|YP_001046744.1| - 8.8e-05 23.0 0.0 0.00013 22.5 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.24 gi|126178779|ref|YP_001046744.1| - 0.00015 21.7 0.0 0.00021 21.2 0.0 1.2 1 0 0 1 1 1 1 Matrixin PPR_3 PF13812.6 gi|126178779|ref|YP_001046744.1| - 0.013 15.6 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 Pentatricopeptide repeat domain Peptidase_M43 PF05572.13 gi|126178779|ref|YP_001046744.1| - 0.017 15.1 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin_4 PF13583.6 gi|126178779|ref|YP_001046744.1| - 0.019 14.6 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.8 gi|126178779|ref|YP_001046744.1| - 0.022 13.4 0.1 0.029 13.0 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase family Reprolysin_5 PF13688.6 gi|126178779|ref|YP_001046744.1| - 0.022 14.9 0.1 0.029 14.5 0.1 1.3 1 1 0 1 1 1 0 Metallo-peptidase family M12 UPF0146 PF03686.13 gi|126178780|ref|YP_001046745.1| - 3e-20 72.4 0.1 3.8e-20 72.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) AAA PF00004.29 gi|126178781|ref|YP_001046746.1| - 1.4e-12 48.2 0.0 3.2e-12 47.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|126178781|ref|YP_001046746.1| - 4.9e-05 23.6 0.1 0.094 13.0 0.0 2.8 2 1 1 3 3 3 2 AAA domain IstB_IS21 PF01695.17 gi|126178781|ref|YP_001046746.1| - 0.00011 22.0 0.1 0.0008 19.2 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_30 PF13604.6 gi|126178781|ref|YP_001046746.1| - 0.00016 21.5 0.7 0.00032 20.5 0.7 1.5 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|126178781|ref|YP_001046746.1| - 0.00038 20.3 0.0 0.00084 19.1 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_assoc_2 PF16193.5 gi|126178781|ref|YP_001046746.1| - 0.0012 19.2 0.1 0.0037 17.6 0.1 1.9 1 0 0 1 1 1 1 AAA C-terminal domain AAA_5 PF07728.14 gi|126178781|ref|YP_001046746.1| - 0.0016 18.5 0.0 0.0032 17.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|126178781|ref|YP_001046746.1| - 0.003 17.1 0.0 0.0053 16.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region Rad17 PF03215.15 gi|126178781|ref|YP_001046746.1| - 0.0059 16.5 0.0 0.017 15.1 0.0 1.8 1 1 1 2 2 2 1 Rad17 P-loop domain AAA_25 PF13481.6 gi|126178781|ref|YP_001046746.1| - 0.0086 15.7 0.3 0.043 13.4 0.0 2.2 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|126178781|ref|YP_001046746.1| - 0.0097 15.2 0.2 0.13 11.5 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin AAA_16 PF13191.6 gi|126178781|ref|YP_001046746.1| - 0.018 15.4 0.1 0.085 13.2 0.1 2.1 1 1 0 1 1 1 0 AAA ATPase domain AAA_11 PF13086.6 gi|126178781|ref|YP_001046746.1| - 0.024 14.4 0.1 0.33 10.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|126178781|ref|YP_001046746.1| - 0.026 14.5 0.0 0.053 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|126178781|ref|YP_001046746.1| - 0.033 14.6 0.0 0.071 13.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|126178781|ref|YP_001046746.1| - 0.036 13.8 0.0 0.065 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain IPT PF01745.16 gi|126178781|ref|YP_001046746.1| - 0.047 13.1 0.0 0.12 11.7 0.0 1.6 1 0 0 1 1 1 0 Isopentenyl transferase TerB_C PF15615.6 gi|126178781|ref|YP_001046746.1| - 0.08 13.2 1.0 0.17 12.2 1.0 1.5 1 0 0 1 1 1 0 TerB-C domain AAA_28 PF13521.6 gi|126178781|ref|YP_001046746.1| - 0.082 13.2 0.0 0.26 11.5 0.0 1.9 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|126178781|ref|YP_001046746.1| - 0.13 11.9 0.0 0.46 10.2 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain DNA_pol3_delta PF06144.13 gi|126178781|ref|YP_001046746.1| - 0.15 11.8 0.0 2.3 8.0 0.0 2.2 2 0 0 2 2 2 0 DNA polymerase III, delta subunit AIRS_C PF02769.22 gi|126178782|ref|YP_001046747.1| - 1.1e-17 64.6 0.1 1.9e-17 63.8 0.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|126178782|ref|YP_001046747.1| - 3.9e-17 62.7 0.8 7.7e-17 61.7 0.8 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain CBFD_NFYB_HMF PF00808.23 gi|126178784|ref|YP_001046749.1| - 5e-16 58.7 1.0 5.5e-16 58.6 1.0 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|126178784|ref|YP_001046749.1| - 2.2e-12 47.5 0.4 2.2e-12 47.5 0.4 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|126178784|ref|YP_001046749.1| - 3e-09 37.0 0.1 3.1e-09 36.9 0.1 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TAF PF02969.17 gi|126178784|ref|YP_001046749.1| - 8.1e-07 29.1 1.2 8.6e-07 29.0 1.2 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.6 gi|126178784|ref|YP_001046749.1| - 8.7e-06 26.0 0.1 9.2e-06 26.0 0.1 1.1 1 0 0 1 1 1 1 CENP-S protein Bromo_TP PF07524.13 gi|126178784|ref|YP_001046749.1| - 2.3e-05 24.3 0.0 2.4e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Bromodomain associated TFIID-31kDa PF02291.15 gi|126178784|ref|YP_001046749.1| - 4.3e-05 23.6 0.1 4.5e-05 23.5 0.1 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID_20kDa PF03847.13 gi|126178784|ref|YP_001046749.1| - 0.00071 20.0 0.0 0.00078 19.9 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.16 gi|126178784|ref|YP_001046749.1| - 0.002 18.1 0.0 0.0028 17.7 0.0 1.3 1 1 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit AAA_32 PF13654.6 gi|126178784|ref|YP_001046749.1| - 0.0046 15.8 1.1 0.005 15.7 1.1 1.2 1 1 0 1 1 1 1 AAA domain PCP_red PF08369.10 gi|126178784|ref|YP_001046749.1| - 0.06 13.6 2.7 0.62 10.3 0.5 2.3 1 1 1 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit IGPD PF00475.18 gi|126178785|ref|YP_001046750.1| - 2.4e-58 196.5 0.2 3.2e-58 196.1 0.2 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.21 gi|126178786|ref|YP_001046751.1| - 5.5e-69 232.1 0.1 6.1e-69 232.0 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|126178786|ref|YP_001046751.1| - 2.8e-07 29.9 1.5 0.00027 20.1 0.9 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain ThiG PF05690.14 gi|126178786|ref|YP_001046751.1| - 1.2e-06 28.0 3.3 0.00041 19.8 0.8 2.1 1 1 1 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|126178786|ref|YP_001046751.1| - 8.4e-06 25.2 0.4 0.0011 18.3 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.17 gi|126178786|ref|YP_001046751.1| - 0.00023 20.4 0.0 0.22 10.6 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|126178786|ref|YP_001046751.1| - 0.00029 20.3 0.7 0.00052 19.5 0.7 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase Trp_syntA PF00290.20 gi|126178786|ref|YP_001046751.1| - 0.0004 19.3 0.8 0.007 15.2 0.3 2.0 2 0 0 2 2 2 1 Tryptophan synthase alpha chain TMP-TENI PF02581.17 gi|126178786|ref|YP_001046751.1| - 0.0015 17.9 0.9 0.0069 15.7 0.1 2.2 2 1 1 3 3 3 1 Thiamine monophosphate synthase PcrB PF01884.17 gi|126178786|ref|YP_001046751.1| - 0.0039 16.7 0.3 0.082 12.3 0.0 2.1 2 0 0 2 2 2 1 PcrB family NanE PF04131.14 gi|126178786|ref|YP_001046751.1| - 0.0057 15.9 0.3 0.47 9.6 0.1 2.2 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|126178786|ref|YP_001046751.1| - 0.013 14.5 6.8 0.14 11.2 6.8 2.1 1 1 0 1 1 1 0 FMN-dependent dehydrogenase G3P_antiterm PF04309.12 gi|126178786|ref|YP_001046751.1| - 0.023 14.1 0.2 3.9 6.9 0.1 2.2 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator DUF357 PF04010.13 gi|126178786|ref|YP_001046751.1| - 0.048 13.7 0.8 1.1 9.4 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF357) IGPS PF00218.21 gi|126178786|ref|YP_001046751.1| - 0.2 10.8 0.0 0.7 9.0 0.0 1.7 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase HisG PF01634.18 gi|126178787|ref|YP_001046752.1| - 7.4e-52 175.5 0.5 1.2e-51 174.9 0.5 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|126178787|ref|YP_001046752.1| - 3.5e-28 97.5 0.8 7.4e-28 96.5 0.2 1.9 2 0 0 2 2 2 1 HisG, C-terminal domain NMT1 PF09084.11 gi|126178787|ref|YP_001046752.1| - 2.8e-09 37.3 0.4 1.3e-08 35.1 0.4 2.3 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|126178787|ref|YP_001046752.1| - 0.033 13.8 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein DUF881 PF05949.12 gi|126178787|ref|YP_001046752.1| - 0.06 13.2 0.3 0.16 11.8 0.0 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF881) AdoMet_Synthase PF01941.19 gi|126178788|ref|YP_001046753.1| - 2.6e-171 569.8 0.1 2.9e-171 569.6 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) DisA_N PF02457.16 gi|126178789|ref|YP_001046754.1| - 4.7e-20 71.3 0.0 9.7e-20 70.3 0.0 1.5 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding MmoB_DmpM PF02406.17 gi|126178789|ref|YP_001046754.1| - 0.11 12.8 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 MmoB/DmpM family CoA_binding PF02629.19 gi|126178790|ref|YP_001046755.1| - 6.2e-20 71.7 2.1 6.2e-20 71.7 2.1 2.2 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|126178790|ref|YP_001046755.1| - 6.8e-13 48.7 0.3 6.5e-12 45.5 0.3 2.3 1 1 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|126178790|ref|YP_001046755.1| - 1.6e-09 37.7 0.9 1.5e-08 34.6 0.0 2.3 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|126178790|ref|YP_001046755.1| - 1.1e-07 32.3 0.4 5.9e-07 30.0 0.1 2.1 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|126178790|ref|YP_001046755.1| - 0.01 16.6 0.1 0.024 15.5 0.1 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DUF1611_N PF17396.2 gi|126178790|ref|YP_001046755.1| - 0.11 12.8 0.2 0.27 11.5 0.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain ATP-grasp_2 PF08442.10 gi|126178791|ref|YP_001046756.1| - 2.5e-46 157.8 0.1 4.1e-46 157.1 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|126178791|ref|YP_001046756.1| - 5.3e-12 45.8 1.0 9.6e-12 45.0 1.0 1.4 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|126178791|ref|YP_001046756.1| - 1.6e-10 40.9 1.3 9.6e-10 38.3 1.3 2.1 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|126178791|ref|YP_001046756.1| - 0.0046 16.8 0.0 0.0086 15.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain POR PF01558.18 gi|126178792|ref|YP_001046757.1| - 5.1e-28 98.3 0.1 7.2e-28 97.8 0.1 1.2 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|126178793|ref|YP_001046758.1| - 2.1e-39 134.8 0.7 2.8e-39 134.4 0.7 1.1 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|126178794|ref|YP_001046759.1| - 2.1e-73 246.9 0.1 2.6e-73 246.6 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|126178794|ref|YP_001046759.1| - 6.8e-14 52.0 0.0 1.4e-13 51.0 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|126178794|ref|YP_001046759.1| - 1.7e-05 24.5 0.4 2.9e-05 23.7 0.4 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Msg2_C PF12373.8 gi|126178794|ref|YP_001046759.1| - 3.1 7.3 4.3 7.1 6.2 0.4 2.5 2 0 0 2 2 2 0 Major surface glycoprotein 2 C terminal Fer4 PF00037.27 gi|126178795|ref|YP_001046760.1| - 1.7e-13 49.8 11.9 1.8e-08 33.8 1.4 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126178795|ref|YP_001046760.1| - 4.4e-11 43.2 4.6 5e-07 30.2 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126178795|ref|YP_001046760.1| - 2e-10 40.3 15.8 8.3e-08 32.0 1.0 3.0 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126178795|ref|YP_001046760.1| - 5.9e-09 35.9 6.2 4.3e-05 23.6 1.0 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126178795|ref|YP_001046760.1| - 3.9e-08 32.9 11.8 1.4e-05 24.9 1.1 3.2 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126178795|ref|YP_001046760.1| - 1.2e-07 31.7 9.0 9.1e-07 28.9 9.6 1.9 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126178795|ref|YP_001046760.1| - 7.1e-07 30.1 8.8 0.0027 18.6 1.4 2.6 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|126178795|ref|YP_001046760.1| - 3.4e-06 27.1 15.6 0.019 15.5 2.7 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126178795|ref|YP_001046760.1| - 4.1e-05 23.7 11.1 0.0014 18.7 11.6 2.5 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|126178795|ref|YP_001046760.1| - 0.00072 20.2 0.8 0.00072 20.2 0.8 2.4 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|126178795|ref|YP_001046760.1| - 0.00099 19.9 4.3 0.00099 19.9 4.3 3.0 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|126178795|ref|YP_001046760.1| - 0.0091 16.5 8.3 0.031 14.8 0.2 2.8 3 0 0 3 3 3 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|126178795|ref|YP_001046760.1| - 0.028 14.6 1.8 0.028 14.6 1.8 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126178795|ref|YP_001046760.1| - 0.045 14.3 12.6 0.097 13.2 2.2 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|126178795|ref|YP_001046760.1| - 1 10.2 9.1 2 9.3 1.1 2.4 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126178795|ref|YP_001046760.1| - 2.7 8.5 14.2 42 4.7 14.6 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fumerase_C PF05683.12 gi|126178796|ref|YP_001046761.1| - 2.4e-36 125.0 0.2 2.7e-36 124.8 0.2 1.0 1 0 0 1 1 1 1 Fumarase C-terminus NifU PF01106.17 gi|126178796|ref|YP_001046761.1| - 0.015 15.5 0.9 0.023 14.8 0.1 1.7 2 0 0 2 2 2 0 NifU-like domain Fumerase PF05681.14 gi|126178797|ref|YP_001046762.1| - 7.8e-89 297.7 0.0 8.8e-89 297.5 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Ribosomal_L16 PF00252.18 gi|126178798|ref|YP_001046763.1| - 5.9e-34 116.9 0.2 6.8e-34 116.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e ABC_tran PF00005.27 gi|126178799|ref|YP_001046764.1| - 1.3e-30 106.7 0.0 1.9e-30 106.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126178799|ref|YP_001046764.1| - 5.7e-09 36.2 0.0 0.00061 19.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|126178799|ref|YP_001046764.1| - 4e-08 33.8 0.4 7.3e-07 29.7 0.4 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|126178799|ref|YP_001046764.1| - 0.0001 22.3 0.0 0.0002 21.3 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_28 PF13521.6 gi|126178799|ref|YP_001046764.1| - 0.00019 21.7 0.1 0.0016 18.7 0.0 2.2 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|126178799|ref|YP_001046764.1| - 0.00036 20.5 0.0 0.00075 19.5 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|126178799|ref|YP_001046764.1| - 0.00051 20.5 0.1 0.00072 20.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|126178799|ref|YP_001046764.1| - 0.00054 20.2 0.0 0.0011 19.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|126178799|ref|YP_001046764.1| - 0.00098 18.9 0.0 0.045 13.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|126178799|ref|YP_001046764.1| - 0.0018 18.8 0.0 0.0023 18.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|126178799|ref|YP_001046764.1| - 0.004 17.1 0.3 0.018 15.0 0.1 2.0 2 1 0 2 2 2 1 NACHT domain AAA_33 PF13671.6 gi|126178799|ref|YP_001046764.1| - 0.0055 16.9 0.0 0.011 15.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|126178799|ref|YP_001046764.1| - 0.0057 16.1 0.0 2.8 7.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|126178799|ref|YP_001046764.1| - 0.0068 16.4 0.1 0.014 15.4 0.1 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|126178799|ref|YP_001046764.1| - 0.0086 15.8 0.5 0.017 14.8 0.4 1.8 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|126178799|ref|YP_001046764.1| - 0.013 16.0 0.2 0.019 15.5 0.2 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|126178799|ref|YP_001046764.1| - 0.023 14.5 0.0 0.045 13.5 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|126178799|ref|YP_001046764.1| - 0.028 14.2 0.0 0.053 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|126178799|ref|YP_001046764.1| - 0.032 14.1 0.1 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|126178799|ref|YP_001046764.1| - 0.033 13.4 0.0 0.053 12.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain PduV-EutP PF10662.9 gi|126178799|ref|YP_001046764.1| - 0.033 13.9 0.0 0.062 13.1 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation TsaE PF02367.17 gi|126178799|ref|YP_001046764.1| - 0.038 14.0 0.1 0.064 13.3 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 gi|126178799|ref|YP_001046764.1| - 0.05 13.5 1.5 2.9 7.8 0.6 2.4 2 1 0 2 2 2 0 NTPase ABC_ATPase PF09818.9 gi|126178799|ref|YP_001046764.1| - 0.056 12.2 0.0 1.1 8.0 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class MMR_HSR1 PF01926.23 gi|126178799|ref|YP_001046764.1| - 0.066 13.3 0.1 0.15 12.1 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|126178799|ref|YP_001046764.1| - 0.068 13.6 0.0 0.22 11.9 0.0 1.8 2 0 0 2 2 2 0 RNA helicase RuvB_N PF05496.12 gi|126178799|ref|YP_001046764.1| - 0.072 12.8 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 gi|126178799|ref|YP_001046764.1| - 0.075 12.6 0.2 0.22 11.1 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|126178799|ref|YP_001046764.1| - 0.11 12.2 1.0 0.38 10.5 0.1 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|126178799|ref|YP_001046764.1| - 0.13 12.5 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.6 gi|126178799|ref|YP_001046764.1| - 0.13 12.3 0.2 0.66 10.0 0.1 2.2 2 1 1 3 3 3 0 AAA domain MCM PF00493.23 gi|126178799|ref|YP_001046764.1| - 0.14 11.2 0.0 0.37 9.9 0.0 1.6 2 0 0 2 2 2 0 MCM P-loop domain BPD_transp_1 PF00528.22 gi|126178800|ref|YP_001046765.1| - 4.1e-22 78.8 13.4 4.1e-22 78.8 13.4 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component NMT1_2 PF13379.6 gi|126178801|ref|YP_001046766.1| - 1.7e-34 119.7 0.6 2.5e-34 119.1 0.6 1.2 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|126178801|ref|YP_001046766.1| - 2.8e-21 76.5 0.0 4e-21 76.0 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|126178801|ref|YP_001046766.1| - 2.2e-06 27.4 0.4 4.3e-06 26.5 0.4 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_3 PF16868.5 gi|126178801|ref|YP_001046766.1| - 8.3e-05 22.1 0.0 0.0018 17.7 0.0 2.0 1 1 1 2 2 2 1 NMT1-like family SBP_bac_3 PF00497.20 gi|126178801|ref|YP_001046766.1| - 0.00041 19.8 0.0 0.0014 18.1 0.0 1.7 1 1 1 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 LysR_substrate PF03466.20 gi|126178801|ref|YP_001046766.1| - 0.0081 15.5 0.0 0.021 14.2 0.0 1.7 1 1 0 1 1 1 1 LysR substrate binding domain Ppnp PF06865.11 gi|126178801|ref|YP_001046766.1| - 0.018 15.4 0.0 0.038 14.4 0.0 1.5 1 0 0 1 1 1 0 Pyrimidine/purine nucleoside phosphorylase Lyase_1 PF00206.20 gi|126178802|ref|YP_001046767.1| - 1.1e-53 182.7 0.0 1.4e-53 182.3 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|126178802|ref|YP_001046767.1| - 1.2e-18 67.7 1.1 3.6e-18 66.1 1.1 1.9 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Asparaginase PF00710.20 gi|126178803|ref|YP_001046768.1| - 4.8e-58 195.9 0.9 2.2e-57 193.7 0.3 2.1 2 1 1 3 3 3 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|126178803|ref|YP_001046768.1| - 2.2e-29 102.0 0.1 1.8e-28 99.0 0.0 2.2 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|126178803|ref|YP_001046768.1| - 1.2e-08 34.2 0.1 2.3e-08 33.2 0.1 1.5 1 0 0 1 1 1 1 GatD N-terminal domain GatB_N PF02934.15 gi|126178804|ref|YP_001046769.1| - 2.2e-61 207.7 0.0 2.9e-61 207.3 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.14 gi|126178804|ref|YP_001046769.1| - 1.8e-14 53.7 0.1 1.1e-13 51.2 0.0 2.2 2 0 0 2 2 2 1 GAD domain GatB_Yqey PF02637.18 gi|126178804|ref|YP_001046769.1| - 5.3e-12 45.9 0.0 8.8e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 GatB domain YqeY PF09424.10 gi|126178804|ref|YP_001046769.1| - 6.2e-05 23.1 0.2 0.00013 22.0 0.2 1.6 1 0 0 1 1 1 1 Yqey-like protein DUF5350 PF17299.2 gi|126178805|ref|YP_001046770.1| - 2.4e-25 88.8 5.4 2.4e-25 88.8 5.4 1.5 2 0 0 2 2 2 1 Family of unknown function (DUF5350) DEK_C PF08766.11 gi|126178806|ref|YP_001046771.1| - 0.05 13.5 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 DEK C terminal domain TPR_1 PF00515.28 gi|126178806|ref|YP_001046771.1| - 0.12 12.3 0.0 0.3 11.0 0.0 1.7 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|126178806|ref|YP_001046771.1| - 0.14 11.8 0.0 0.85 9.3 0.0 2.0 2 0 0 2 2 2 0 TPR repeat Nitroreductase PF00881.24 gi|126178807|ref|YP_001046772.1| - 4.5e-35 121.2 0.1 3.4e-17 63.0 0.1 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|126178807|ref|YP_001046772.1| - 1.5e-11 44.3 0.0 0.0012 18.4 0.0 3.0 1 1 1 3 3 3 3 Putative TM nitroreductase DUF555 PF04475.12 gi|126178808|ref|YP_001046773.1| - 5.9e-48 161.4 0.8 6.7e-48 161.2 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) PfkB PF00294.24 gi|126178809|ref|YP_001046774.1| - 6.3e-45 153.8 0.0 7.1e-45 153.6 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF2070 PF09843.9 gi|126178810|ref|YP_001046775.1| - 2e-201 670.2 0.6 2.3e-201 670.0 0.6 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) Aminotran_1_2 PF00155.21 gi|126178811|ref|YP_001046776.1| - 1.9e-31 109.5 0.0 2.4e-31 109.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|126178811|ref|YP_001046776.1| - 8.8e-08 31.3 0.0 1.2e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase SopA PF13981.6 gi|126178811|ref|YP_001046776.1| - 0.2 12.1 0.0 0.33 11.4 0.0 1.2 1 0 0 1 1 1 0 SopA-like central domain DUF4386 PF14329.6 gi|126178812|ref|YP_001046777.1| - 5.4e-05 23.2 20.6 0.00011 22.2 20.6 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4386) DUF996 PF06195.13 gi|126178812|ref|YP_001046777.1| - 0.0004 20.7 1.3 0.00084 19.6 0.8 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF996) DUF1418 PF07214.12 gi|126178812|ref|YP_001046777.1| - 0.0073 16.1 0.6 0.0073 16.1 0.6 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1418) PTPS_related PF10131.9 gi|126178812|ref|YP_001046777.1| - 0.0088 14.4 6.1 0.014 13.7 6.1 1.3 1 0 0 1 1 1 1 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein Tetraspanin PF00335.20 gi|126178812|ref|YP_001046777.1| - 0.032 13.9 0.8 0.032 13.9 0.8 2.0 1 1 1 2 2 2 0 Tetraspanin family DUF998 PF06197.13 gi|126178812|ref|YP_001046777.1| - 0.036 13.7 30.8 0.27 10.8 12.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF998) Cupin_2 PF07883.11 gi|126178813|ref|YP_001046778.1| - 0.0062 16.2 0.1 0.066 12.9 0.1 2.3 1 1 0 1 1 1 1 Cupin domain GAF_2 PF13185.6 gi|126178814|ref|YP_001046779.1| - 8.5e-20 71.5 0.7 2.2e-18 66.9 0.3 2.5 2 0 0 2 2 2 1 GAF domain HATPase_c PF02518.26 gi|126178814|ref|YP_001046779.1| - 1.3e-19 70.8 0.0 3e-19 69.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|126178814|ref|YP_001046779.1| - 3.5e-18 65.8 0.3 1.3e-16 60.8 0.0 3.3 3 0 0 3 3 3 1 PAS fold PAS_3 PF08447.12 gi|126178814|ref|YP_001046779.1| - 7.6e-17 61.4 0.1 2.2e-12 47.1 0.0 3.4 3 0 0 3 3 3 2 PAS fold GAF PF01590.26 gi|126178814|ref|YP_001046779.1| - 2.1e-13 51.0 0.1 4.5e-13 50.0 0.1 1.5 1 0 0 1 1 1 1 GAF domain PAS PF00989.25 gi|126178814|ref|YP_001046779.1| - 2.5e-09 37.1 0.0 3.6e-05 23.7 0.0 3.5 2 1 1 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|126178814|ref|YP_001046779.1| - 6.1e-08 32.9 0.2 8.5e-05 22.8 0.0 3.5 3 1 1 4 4 3 2 PAS domain HATPase_c_2 PF13581.6 gi|126178814|ref|YP_001046779.1| - 2.5e-05 24.2 0.1 7.8e-05 22.6 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF_3 PF13492.6 gi|126178814|ref|YP_001046779.1| - 2.6e-05 24.6 0.1 0.00014 22.2 0.1 2.1 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|126178814|ref|YP_001046779.1| - 4.2e-05 23.5 0.0 0.00036 20.5 0.0 2.6 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 gi|126178814|ref|YP_001046779.1| - 0.035 14.0 0.0 0.072 13.0 0.0 1.4 1 0 0 1 1 1 0 GHKL domain PAS_7 PF12860.7 gi|126178814|ref|YP_001046779.1| - 0.071 13.3 0.2 1.7 8.9 0.0 3.1 3 0 0 3 3 3 0 PAS fold PAS_10 PF13596.6 gi|126178814|ref|YP_001046779.1| - 0.16 12.5 0.0 0.53 10.9 0.0 2.0 1 0 0 1 1 1 0 PAS domain CENP-Q PF13094.6 gi|126178814|ref|YP_001046779.1| - 0.21 11.8 6.2 5.6 7.1 2.1 3.3 3 0 0 3 3 3 0 CENP-Q, a CENPA-CAD centromere complex subunit DivIC PF04977.15 gi|126178814|ref|YP_001046779.1| - 3.7 7.4 13.0 18 5.2 0.1 3.6 3 0 0 3 3 3 0 Septum formation initiator DZR PF12773.7 gi|126178816|ref|YP_001046781.1| - 0.0027 17.7 0.8 0.0041 17.1 0.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon RecR PF02132.15 gi|126178816|ref|YP_001046781.1| - 0.017 14.7 0.8 0.035 13.7 0.8 1.5 1 0 0 1 1 1 0 RecR protein BetaGal_dom4_5 PF13364.6 gi|126178817|ref|YP_001046782.1| - 0.009 16.6 0.2 0.013 16.1 0.2 1.4 1 1 0 1 1 1 1 Beta-galactosidase jelly roll domain PKD PF00801.20 gi|126178817|ref|YP_001046782.1| - 0.012 15.4 0.1 0.025 14.4 0.0 1.7 2 0 0 2 2 2 0 PKD domain AlbA_2 PF04326.14 gi|126178818|ref|YP_001046783.1| - 3.4e-20 72.6 0.2 6.3e-20 71.7 0.0 1.6 2 0 0 2 2 1 1 Putative DNA-binding domain HATPase_c_4 PF13749.6 gi|126178818|ref|YP_001046783.1| - 2.4e-13 50.0 0.0 6.1e-13 48.7 0.0 1.8 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal HTH_24 PF13412.6 gi|126178818|ref|YP_001046783.1| - 4.2e-07 29.4 0.4 1.1e-06 28.1 0.4 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|126178818|ref|YP_001046783.1| - 2.8e-05 24.0 0.1 6.7e-05 22.7 0.1 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|126178818|ref|YP_001046783.1| - 0.0012 18.7 0.7 0.0054 16.6 0.7 2.1 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|126178818|ref|YP_001046783.1| - 0.0032 17.2 2.5 0.019 14.8 1.4 2.5 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_1 PF00126.27 gi|126178818|ref|YP_001046783.1| - 0.0057 16.6 0.1 0.016 15.2 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Crp_2 PF13545.6 gi|126178818|ref|YP_001046783.1| - 0.015 15.3 0.6 0.32 11.0 0.1 2.8 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|126178818|ref|YP_001046783.1| - 0.022 14.8 0.3 0.076 13.1 0.3 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_C_36 PF18598.1 gi|126178818|ref|YP_001046783.1| - 0.043 13.8 0.1 0.1 12.5 0.1 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Rrf2 PF02082.20 gi|126178818|ref|YP_001046783.1| - 0.081 13.3 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Rnk_N PF14760.6 gi|126178818|ref|YP_001046783.1| - 0.099 13.1 0.2 34 5.0 0.1 2.9 2 0 0 2 2 2 0 Rnk N-terminus AbiEi_4 PF13338.6 gi|126178818|ref|YP_001046783.1| - 0.35 11.1 2.8 0.52 10.5 0.6 2.5 3 0 0 3 3 3 0 Transcriptional regulator, AbiEi antitoxin DUF2073 PF09846.9 gi|126178819|ref|YP_001046784.1| - 0.0027 17.6 0.1 0.0058 16.5 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) DUF4263 PF14082.6 gi|126178819|ref|YP_001046784.1| - 0.12 12.6 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4263) NucS PF01939.16 gi|126178820|ref|YP_001046785.1| - 0.01 15.2 0.0 0.021 14.2 0.0 1.4 1 0 0 1 1 1 0 Endonuclease NucS SfsA PF03749.13 gi|126178820|ref|YP_001046785.1| - 0.041 13.8 0.0 0.13 12.1 0.0 1.8 2 0 0 2 2 2 0 Sugar fermentation stimulation protein RE domain Ribonuc_L-PSP PF01042.21 gi|126178821|ref|YP_001046786.1| - 3e-40 137.0 0.0 3.4e-40 136.8 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Response_reg PF00072.24 gi|126178822|ref|YP_001046787.1| - 6.6e-22 77.8 0.0 1.4e-21 76.7 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|126178822|ref|YP_001046787.1| - 4.8e-13 49.2 0.0 2.8e-12 46.8 0.0 2.2 2 0 0 2 2 2 1 PAS domain HATPase_c PF02518.26 gi|126178822|ref|YP_001046787.1| - 5.8e-09 36.5 0.0 1.9e-08 34.8 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|126178822|ref|YP_001046787.1| - 1.9e-07 31.1 0.0 5.1e-07 29.7 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|126178822|ref|YP_001046787.1| - 2.4e-06 27.4 0.0 6.4e-06 26.1 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|126178822|ref|YP_001046787.1| - 1.3e-05 25.4 0.0 3.4e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|126178822|ref|YP_001046787.1| - 4.3e-05 23.7 0.4 0.00015 21.9 0.0 2.1 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|126178822|ref|YP_001046787.1| - 0.0037 17.3 0.1 0.0093 16.0 0.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.6 gi|126178822|ref|YP_001046787.1| - 0.03 14.0 0.0 0.063 13.0 0.0 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_12 PF18095.1 gi|126178822|ref|YP_001046787.1| - 0.08 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain DUF3887 PF13026.6 gi|126178823|ref|YP_001046788.1| - 2.5e-11 44.2 0.0 3.5e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3887) DUF4019 PF13211.6 gi|126178823|ref|YP_001046788.1| - 0.00044 20.6 0.0 0.0016 18.8 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF4019) AceK PF06315.11 gi|126178823|ref|YP_001046788.1| - 0.089 11.3 0.0 0.089 11.3 0.0 1.0 1 0 0 1 1 1 0 Isocitrate dehydrogenase kinase/phosphatase (AceK) DUF234 PF03008.14 gi|126178824|ref|YP_001046789.1| - 2.5e-18 66.3 0.1 4.7e-18 65.5 0.1 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|126178824|ref|YP_001046789.1| - 1.5e-12 48.0 0.0 1.2e-11 45.0 0.0 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|126178824|ref|YP_001046789.1| - 1.8e-08 34.5 0.0 3.5e-08 33.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|126178824|ref|YP_001046789.1| - 5.3e-06 26.9 0.1 7.7e-05 23.1 0.1 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|126178824|ref|YP_001046789.1| - 1e-05 25.9 0.0 1.7e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|126178824|ref|YP_001046789.1| - 0.025 14.0 0.0 0.061 12.7 0.0 1.6 1 1 0 1 1 1 0 Bacterial TniB protein TrmB PF01978.19 gi|126178824|ref|YP_001046789.1| - 0.14 12.1 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|126178824|ref|YP_001046789.1| - 0.16 12.0 0.0 0.31 11.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Catalase PF00199.19 gi|126178825|ref|YP_001046790.1| - 2.6e-177 589.7 0.1 3.4e-177 589.3 0.1 1.1 1 0 0 1 1 1 1 Catalase Catalase_C PF18011.1 gi|126178825|ref|YP_001046790.1| - 2.1e-25 89.1 0.5 3.4e-25 88.4 0.5 1.3 1 0 0 1 1 1 1 C-terminal domain found in long catalases Catalase-rel PF06628.12 gi|126178825|ref|YP_001046790.1| - 8.8e-23 80.3 0.0 2.3e-22 78.9 0.0 1.8 1 0 0 1 1 1 1 Catalase-related immune-responsive DJ-1_PfpI PF01965.24 gi|126178825|ref|YP_001046790.1| - 1.4e-16 60.7 0.5 2.2e-16 60.1 0.5 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family MctB PF11382.8 gi|126178825|ref|YP_001046790.1| - 0.022 14.5 0.0 0.038 13.7 0.0 1.2 1 0 0 1 1 1 0 Copper transport outer membrane protein, MctB Radical_SAM PF04055.21 gi|126178826|ref|YP_001046791.1| - 5.1e-25 88.8 0.0 8.7e-25 88.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|126178826|ref|YP_001046791.1| - 1.7e-10 41.2 0.1 4.6e-10 39.9 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|126178826|ref|YP_001046791.1| - 2e-08 34.6 0.0 3.4e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|126178826|ref|YP_001046791.1| - 5e-05 23.4 0.0 9.2e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain NPDC1 PF06809.11 gi|126178826|ref|YP_001046791.1| - 0.026 13.6 0.0 0.036 13.1 0.0 1.2 1 0 0 1 1 1 0 Neural proliferation differentiation control-1 protein (NPDC1) AsnC_trans_reg2 PF17805.1 gi|126178827|ref|YP_001046792.1| - 1.7e-28 98.6 0.1 3e-28 97.8 0.1 1.4 1 0 0 1 1 1 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|126178827|ref|YP_001046792.1| - 0.00032 20.4 2.1 0.00032 20.4 2.1 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_1 PF00126.27 gi|126178827|ref|YP_001046792.1| - 0.028 14.4 0.9 0.038 13.9 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Tnp_ISL3 PF13542.6 gi|126178827|ref|YP_001046792.1| - 0.059 12.8 0.0 0.44 10.0 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 AsnC_trans_reg2 PF17805.1 gi|126178828|ref|YP_001046793.1| - 3.8e-23 81.4 0.0 5.1e-23 81.0 0.0 1.2 1 0 0 1 1 1 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|126178828|ref|YP_001046793.1| - 4.4e-06 26.4 0.2 9.3e-06 25.4 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|126178828|ref|YP_001046793.1| - 0.0006 19.7 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Radical_SAM PF04055.21 gi|126178829|ref|YP_001046794.1| - 8.4e-26 91.3 0.0 1.3e-25 90.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|126178829|ref|YP_001046794.1| - 1.5e-09 38.2 0.8 3.1e-09 37.2 0.8 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|126178829|ref|YP_001046794.1| - 1.8e-07 31.5 0.0 3.1e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|126178829|ref|YP_001046794.1| - 0.00056 20.0 0.0 0.001 19.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain PhdYeFM_antitox PF02604.19 gi|126178829|ref|YP_001046794.1| - 0.046 13.5 0.0 8.6 6.2 0.0 2.3 2 0 0 2 2 2 0 Antitoxin Phd_YefM, type II toxin-antitoxin system Amidohydro_2 PF04909.14 gi|126178829|ref|YP_001046794.1| - 0.14 11.9 0.0 0.3 10.8 0.0 1.3 1 1 0 1 1 1 0 Amidohydrolase DnaJ PF00226.31 gi|126178830|ref|YP_001046795.1| - 4.1e-10 39.6 0.0 5.6e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 DnaJ domain Aminotran_5 PF00266.19 gi|126178831|ref|YP_001046796.1| - 2.4e-75 253.8 0.0 2.8e-75 253.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|126178831|ref|YP_001046796.1| - 2.5e-06 27.1 0.0 3.6e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|126178831|ref|YP_001046796.1| - 0.00022 19.9 0.0 0.00031 19.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|126178831|ref|YP_001046796.1| - 0.16 11.2 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Methyltransf_11 PF08241.12 gi|126178833|ref|YP_001046798.1| - 4.4e-13 49.7 0.0 1.1e-12 48.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|126178833|ref|YP_001046798.1| - 1.3e-09 38.1 0.0 2.7e-09 37.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126178833|ref|YP_001046798.1| - 3.4e-07 30.9 0.0 8.1e-07 29.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126178833|ref|YP_001046798.1| - 0.0013 19.4 0.0 0.0044 17.7 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|126178833|ref|YP_001046798.1| - 0.015 14.6 0.0 0.064 12.6 0.0 2.1 2 1 0 2 2 2 0 ubiE/COQ5 methyltransferase family PAS_9 PF13426.7 gi|126178834|ref|YP_001046799.1| - 2.2e-52 175.7 0.5 3e-11 43.5 0.0 5.3 5 1 0 5 5 5 4 PAS domain PAS_4 PF08448.10 gi|126178834|ref|YP_001046799.1| - 3.7e-40 136.6 2.6 1.4e-12 47.8 0.1 5.3 4 2 0 4 4 4 4 PAS fold PAS PF00989.25 gi|126178834|ref|YP_001046799.1| - 2.2e-38 130.7 0.4 1.1e-12 48.0 0.0 5.8 5 0 0 5 5 5 5 PAS fold PAS_8 PF13188.7 gi|126178834|ref|YP_001046799.1| - 3.3e-26 90.8 0.1 2.2e-08 33.9 0.0 5.1 4 1 0 4 4 4 4 PAS domain HATPase_c PF02518.26 gi|126178834|ref|YP_001046799.1| - 9.1e-21 74.5 0.0 1.9e-20 73.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|126178834|ref|YP_001046799.1| - 1.6e-17 63.6 0.0 1.3e-05 25.4 0.0 6.1 5 1 0 5 5 5 3 PAS fold PAS_10 PF13596.6 gi|126178834|ref|YP_001046799.1| - 1.3e-07 32.2 0.0 0.0021 18.6 0.0 4.5 5 0 0 5 5 5 2 PAS domain PAS_7 PF12860.7 gi|126178834|ref|YP_001046799.1| - 1.6e-07 31.5 4.8 0.045 13.9 0.1 5.4 3 3 0 3 3 3 2 PAS fold HATPase_c_2 PF13581.6 gi|126178834|ref|YP_001046799.1| - 0.00013 22.0 0.1 0.00039 20.4 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain ZapB PF06005.12 gi|126178834|ref|YP_001046799.1| - 0.0083 16.5 4.3 0.0083 16.5 4.3 3.9 4 1 0 4 4 4 1 Cell division protein ZapB HATPase_c_5 PF14501.6 gi|126178834|ref|YP_001046799.1| - 0.012 15.5 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 GHKL domain dCache_1 PF02743.18 gi|126178834|ref|YP_001046799.1| - 0.18 11.6 0.0 26 4.5 0.0 3.4 4 0 0 4 4 4 0 Cache domain FlaC_arch PF05377.11 gi|126178834|ref|YP_001046799.1| - 0.3 11.5 3.0 0.38 11.2 0.5 2.4 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) GIT_CC PF16559.5 gi|126178834|ref|YP_001046799.1| - 0.35 10.8 1.8 0.76 9.7 0.5 2.2 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor dCMP_cyt_deam_1 PF00383.23 gi|126178835|ref|YP_001046800.1| - 8.4e-20 70.5 0.7 1.1e-19 70.2 0.7 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|126178835|ref|YP_001046800.1| - 6.8e-07 29.1 0.0 3e-06 27.0 0.0 1.9 1 1 0 1 1 1 1 MafB19-like deaminase Abhydrolase_1 PF00561.20 gi|126178837|ref|YP_001046802.1| - 1e-28 100.7 0.0 1.6e-28 100.1 0.0 1.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|126178837|ref|YP_001046802.1| - 1.3e-22 81.5 2.7 1.5e-22 81.3 2.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|126178837|ref|YP_001046802.1| - 8.3e-20 71.1 0.0 7.3e-13 48.3 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_5 PF12695.7 gi|126178837|ref|YP_001046802.1| - 1.4e-05 25.0 0.0 0.0054 16.5 0.0 2.6 3 0 0 3 3 3 2 Alpha/beta hydrolase family DUF915 PF06028.11 gi|126178837|ref|YP_001046802.1| - 0.0004 19.8 0.0 0.00087 18.7 0.0 1.5 2 0 0 2 2 2 1 Alpha/beta hydrolase of unknown function (DUF915) Peptidase_S9 PF00326.21 gi|126178837|ref|YP_001046802.1| - 0.0056 16.2 0.0 0.12 11.8 0.0 2.3 2 1 0 2 2 2 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|126178837|ref|YP_001046802.1| - 0.0082 15.8 0.1 0.15 11.7 0.0 2.2 2 0 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_4 PF08386.10 gi|126178837|ref|YP_001046802.1| - 0.064 13.4 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein Abhydrolase_2 PF02230.16 gi|126178837|ref|YP_001046802.1| - 0.11 12.2 0.0 6.7 6.4 0.0 2.4 3 0 0 3 3 3 0 Phospholipase/Carboxylesterase Peptidase_M24 PF00557.24 gi|126178838|ref|YP_001046803.1| - 2.1e-36 125.6 0.1 2.9e-36 125.1 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|126178838|ref|YP_001046803.1| - 6.3e-11 43.0 0.0 1e-10 42.3 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Methyltransf_25 PF13649.6 gi|126178839|ref|YP_001046804.1| - 2.1e-18 66.8 0.0 3.4e-18 66.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126178839|ref|YP_001046804.1| - 2.3e-17 63.4 0.0 4e-17 62.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126178839|ref|YP_001046804.1| - 8.9e-13 48.3 0.0 1.1e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126178839|ref|YP_001046804.1| - 8.8e-10 39.2 0.0 1.3e-09 38.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|126178839|ref|YP_001046804.1| - 2.4e-08 33.6 0.0 3.2e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|126178839|ref|YP_001046804.1| - 4e-07 30.0 0.0 7e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|126178839|ref|YP_001046804.1| - 1.7e-05 24.4 0.0 2.7e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_24 PF13578.6 gi|126178839|ref|YP_001046804.1| - 1.7e-05 25.7 0.0 3.7e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|126178839|ref|YP_001046804.1| - 3.1e-05 23.6 0.0 5.5e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.18 gi|126178839|ref|YP_001046804.1| - 0.00042 19.7 0.0 0.00074 18.9 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase domain Methyltransf_15 PF09445.10 gi|126178839|ref|YP_001046804.1| - 0.0039 16.8 0.0 0.005 16.4 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase RrnaAD PF00398.20 gi|126178839|ref|YP_001046804.1| - 0.0067 15.5 0.0 0.0091 15.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.7 gi|126178839|ref|YP_001046804.1| - 0.016 15.1 0.0 0.025 14.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|126178839|ref|YP_001046804.1| - 0.021 14.6 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GidB PF02527.15 gi|126178839|ref|YP_001046804.1| - 0.056 12.8 0.0 0.077 12.3 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G NodS PF05401.11 gi|126178839|ref|YP_001046804.1| - 0.063 12.9 0.0 0.075 12.6 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|126178839|ref|YP_001046804.1| - 0.079 12.9 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|126178839|ref|YP_001046804.1| - 0.16 11.7 0.0 0.41 10.3 0.0 1.7 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 PrmA PF06325.13 gi|126178839|ref|YP_001046804.1| - 0.24 10.7 0.0 0.3 10.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) RsgA_GTPase PF03193.16 gi|126178840|ref|YP_001046805.1| - 7.8e-42 143.0 0.0 1.1e-41 142.5 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|126178840|ref|YP_001046805.1| - 5.9e-08 32.8 0.0 1.5e-07 31.5 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|126178840|ref|YP_001046805.1| - 6.3e-06 25.8 0.0 0.062 12.8 0.0 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|126178840|ref|YP_001046805.1| - 6.2e-05 22.6 0.1 0.065 12.8 0.0 2.7 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain ABC_tran PF00005.27 gi|126178840|ref|YP_001046805.1| - 9.7e-05 22.9 0.0 0.00019 22.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter Dynamin_N PF00350.23 gi|126178840|ref|YP_001046805.1| - 0.00042 20.4 0.3 0.0065 16.5 0.1 2.6 2 1 1 3 3 3 1 Dynamin family AAA_22 PF13401.6 gi|126178840|ref|YP_001046805.1| - 0.00072 19.8 0.0 0.0015 18.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain Septin PF00735.18 gi|126178840|ref|YP_001046805.1| - 0.00078 18.8 0.0 0.0015 17.9 0.0 1.3 1 0 0 1 1 1 1 Septin Roc PF08477.13 gi|126178840|ref|YP_001046805.1| - 0.0012 19.0 0.1 0.0034 17.6 0.0 1.7 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_16 PF13191.6 gi|126178840|ref|YP_001046805.1| - 0.0039 17.6 0.0 0.02 15.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain cobW PF02492.19 gi|126178840|ref|YP_001046805.1| - 0.0042 16.7 0.5 2.3 7.8 0.0 2.4 3 0 0 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.9 gi|126178840|ref|YP_001046805.1| - 0.0083 15.9 0.0 1.3 8.7 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.6 gi|126178840|ref|YP_001046805.1| - 0.01 15.6 0.0 0.024 14.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AIG1 PF04548.16 gi|126178840|ref|YP_001046805.1| - 0.022 14.1 0.1 0.032 13.6 0.1 1.2 1 0 0 1 1 1 0 AIG1 family Ras PF00071.22 gi|126178840|ref|YP_001046805.1| - 0.024 14.2 0.0 0.36 10.4 0.0 2.1 2 0 0 2 2 2 0 Ras family AAA_33 PF13671.6 gi|126178840|ref|YP_001046805.1| - 0.031 14.4 0.0 0.2 11.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|126178840|ref|YP_001046805.1| - 0.045 14.0 0.0 0.095 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|126178840|ref|YP_001046805.1| - 0.055 12.4 2.5 1 8.3 0.1 2.7 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|126178840|ref|YP_001046805.1| - 0.056 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|126178840|ref|YP_001046805.1| - 0.15 12.6 0.0 0.29 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|126178840|ref|YP_001046805.1| - 0.15 11.9 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Methyltransf_31 PF13847.6 gi|126178841|ref|YP_001046806.1| - 1.8e-23 83.1 0.0 2.4e-23 82.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126178841|ref|YP_001046806.1| - 1e-20 74.2 0.0 4.9e-20 72.0 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126178841|ref|YP_001046806.1| - 2e-20 73.2 0.0 2.7e-19 69.6 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126178841|ref|YP_001046806.1| - 8.9e-17 61.7 0.0 1.7e-16 60.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|126178841|ref|YP_001046806.1| - 1.5e-14 54.2 0.0 3.4e-14 53.0 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|126178841|ref|YP_001046806.1| - 1e-12 47.9 0.0 1.8e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_2 PF00891.18 gi|126178841|ref|YP_001046806.1| - 1.2e-07 31.3 0.0 1.4e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain PCMT PF01135.19 gi|126178841|ref|YP_001046806.1| - 1.5e-07 31.4 0.0 2.1e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|126178841|ref|YP_001046806.1| - 4.2e-07 29.6 0.0 6.8e-07 28.9 0.0 1.4 1 1 0 1 1 1 1 Putative methyltransferase MTS PF05175.14 gi|126178841|ref|YP_001046806.1| - 9.1e-07 28.6 0.0 1.4e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TPMT PF05724.11 gi|126178841|ref|YP_001046806.1| - 2e-05 24.4 0.0 3.2e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) NodS PF05401.11 gi|126178841|ref|YP_001046806.1| - 3.1e-05 23.7 0.0 4.4e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.20 gi|126178841|ref|YP_001046806.1| - 0.0003 20.2 0.0 0.00037 19.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|126178841|ref|YP_001046806.1| - 0.0028 17.1 0.0 0.004 16.6 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB CheR PF01739.18 gi|126178841|ref|YP_001046806.1| - 0.0059 16.1 0.0 2.1 7.8 0.0 2.2 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain Methyltransf_9 PF08003.11 gi|126178841|ref|YP_001046806.1| - 0.0089 15.0 0.0 0.013 14.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) FtsJ PF01728.19 gi|126178841|ref|YP_001046806.1| - 0.013 15.6 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase GCD14 PF08704.10 gi|126178841|ref|YP_001046806.1| - 0.02 14.6 0.0 0.029 14.1 0.0 1.1 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit MetW PF07021.12 gi|126178841|ref|YP_001046806.1| - 0.027 14.0 0.0 0.041 13.5 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.7 gi|126178841|ref|YP_001046806.1| - 0.045 13.7 0.0 0.075 13.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|126178841|ref|YP_001046806.1| - 0.082 11.9 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_16 PF10294.9 gi|126178841|ref|YP_001046806.1| - 0.11 12.2 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_24 PF13578.6 gi|126178841|ref|YP_001046806.1| - 0.13 13.3 0.0 0.4 11.7 0.0 1.8 2 0 0 2 2 1 0 Methyltransferase domain DUF938 PF06080.12 gi|126178841|ref|YP_001046806.1| - 0.26 11.0 0.0 0.37 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) DUF998 PF06197.13 gi|126178842|ref|YP_001046807.1| - 2.2e-17 63.2 28.0 2.7e-17 63.0 28.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Radical_SAM PF04055.21 gi|126178843|ref|YP_001046808.1| - 1.6e-13 51.4 0.1 4.4e-13 49.9 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|126178843|ref|YP_001046808.1| - 2.4e-05 24.7 0.1 6.3e-05 23.4 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|126178843|ref|YP_001046808.1| - 0.00023 21.4 0.0 0.00059 20.1 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|126178843|ref|YP_001046808.1| - 0.00059 19.9 0.0 0.0013 18.8 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Flavodoxin_2 PF02525.17 gi|126178844|ref|YP_001046809.1| - 4.8e-34 117.8 0.0 5.4e-34 117.6 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 gi|126178844|ref|YP_001046809.1| - 2.9e-12 46.6 0.0 3.8e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Barstar PF01337.18 gi|126178844|ref|YP_001046809.1| - 0.11 12.5 0.1 1.8 8.6 0.1 2.1 2 0 0 2 2 2 0 Barstar (barnase inhibitor) Putative_PNPOx PF01243.20 gi|126178845|ref|YP_001046810.1| - 8.1e-11 42.0 0.0 1.4e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|126178845|ref|YP_001046810.1| - 1.2e-07 31.5 0.0 1.4e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like Pyridox_ox_2 PF12900.7 gi|126178845|ref|YP_001046810.1| - 0.0024 17.9 0.0 0.0033 17.4 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxase_2 PF12766.7 gi|126178845|ref|YP_001046810.1| - 0.056 14.1 0.1 0.15 12.7 0.0 1.8 2 1 0 2 2 2 0 Pyridoxamine 5'-phosphate oxidase DNA_alkylation PF08713.11 gi|126178846|ref|YP_001046811.1| - 5.3e-62 209.3 1.9 5.9e-62 209.1 1.9 1.0 1 0 0 1 1 1 1 DNA alkylation repair enzyme HEAT_2 PF13646.6 gi|126178846|ref|YP_001046811.1| - 0.03 14.7 0.0 0.06 13.7 0.0 1.6 1 0 0 1 1 1 0 HEAT repeats Metallophos PF00149.28 gi|126178847|ref|YP_001046812.1| - 4.4e-05 24.1 0.0 0.00011 22.7 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|126178847|ref|YP_001046812.1| - 0.0039 17.4 0.0 0.006 16.8 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Condensation PF00668.20 gi|126178848|ref|YP_001046813.1| - 1e-10 40.9 0.0 5.6e-09 35.2 0.0 3.1 2 1 0 2 2 2 1 Condensation domain TetR_N PF00440.23 gi|126178849|ref|YP_001046814.1| - 2.5e-11 43.2 0.5 5e-11 42.2 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 gi|126178849|ref|YP_001046814.1| - 7.6e-10 39.0 1.9 2.3e-09 37.5 0.4 2.1 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_C_31 PF17940.1 gi|126178849|ref|YP_001046814.1| - 3.9e-07 30.2 0.9 7.1e-07 29.4 0.5 1.7 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_22 PF13309.6 gi|126178849|ref|YP_001046814.1| - 3.9e-05 23.7 0.1 8e-05 22.6 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|126178849|ref|YP_001046814.1| - 0.00041 20.1 0.1 0.003 17.3 0.1 2.2 2 0 0 2 2 2 1 Homeodomain-like domain TetR_C_11 PF16859.5 gi|126178849|ref|YP_001046814.1| - 0.00083 19.7 0.8 0.0027 18.0 0.4 2.1 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain HTH_17 PF12728.7 gi|126178849|ref|YP_001046814.1| - 0.0014 18.8 0.4 0.0029 17.8 0.1 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain Phage_AlpA PF05930.12 gi|126178849|ref|YP_001046814.1| - 0.0048 16.7 0.0 0.0091 15.8 0.0 1.4 1 0 0 1 1 1 1 Prophage CP4-57 regulatory protein (AlpA) TetR_C_26 PF17934.1 gi|126178849|ref|YP_001046814.1| - 0.0068 16.7 0.0 0.018 15.4 0.0 1.7 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 gi|126178849|ref|YP_001046814.1| - 0.012 15.7 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_3 PF01381.22 gi|126178849|ref|YP_001046814.1| - 0.02 15.0 0.0 0.042 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix TetR_C_17 PF17922.1 gi|126178849|ref|YP_001046814.1| - 0.021 14.9 0.0 0.041 14.0 0.0 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_12 PF16914.5 gi|126178849|ref|YP_001046814.1| - 0.034 14.3 0.1 0.076 13.1 0.1 1.5 1 0 0 1 1 1 0 Bacterial transcriptional repressor C-terminal DUF134 PF02001.16 gi|126178849|ref|YP_001046814.1| - 0.045 14.3 0.0 0.12 12.9 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_19 PF12844.7 gi|126178849|ref|YP_001046814.1| - 0.046 13.7 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.19 gi|126178849|ref|YP_001046814.1| - 0.058 13.2 1.9 0.12 12.2 0.1 2.4 3 0 0 3 3 3 0 Bacterial regulatory protein, Fis family HTH_AraC PF00165.23 gi|126178849|ref|YP_001046814.1| - 0.076 13.1 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_7 PF02796.15 gi|126178849|ref|YP_001046814.1| - 0.09 12.9 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_Tnp_1 PF01527.20 gi|126178849|ref|YP_001046814.1| - 0.12 12.7 0.0 0.24 11.8 0.0 1.5 1 0 0 1 1 1 0 Transposase Sigma54_CBD PF04963.13 gi|126178849|ref|YP_001046814.1| - 0.16 11.8 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 factor, core binding domain Peptidase_M17_N PF02789.17 gi|126178849|ref|YP_001046814.1| - 0.18 11.7 0.6 0.56 10.1 0.0 2.0 2 1 0 2 2 2 0 Cytosol aminopeptidase family, N-terminal domain MMPL PF03176.15 gi|126178851|ref|YP_001046816.1| - 1.1e-48 165.9 23.1 8.5e-28 97.2 6.1 2.5 2 1 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|126178851|ref|YP_001046816.1| - 2.6e-11 43.6 6.8 3.2e-07 30.3 2.0 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|126178851|ref|YP_001046816.1| - 9.5e-09 34.9 4.1 9.5e-09 34.9 4.1 2.5 2 0 0 2 2 2 1 Protein export membrane protein Patched PF02460.18 gi|126178851|ref|YP_001046816.1| - 2.3e-08 32.6 10.8 0.00013 20.2 3.2 2.2 2 0 0 2 2 2 2 Patched family ACR_tran PF00873.19 gi|126178851|ref|YP_001046816.1| - 3.6e-07 28.3 4.4 3.6e-07 28.3 4.4 2.1 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family DUF3796 PF12676.7 gi|126178851|ref|YP_001046816.1| - 2.7 8.4 5.9 1.5 9.3 0.0 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF3796) DUF2206 PF09971.9 gi|126178851|ref|YP_001046816.1| - 7.5 5.2 7.8 5.7 5.6 0.5 2.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2206) Fer4 PF00037.27 gi|126178852|ref|YP_001046817.1| - 2.9e-08 33.2 20.4 1e-07 31.5 4.0 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126178852|ref|YP_001046817.1| - 1.9e-06 27.9 3.7 1.9e-06 27.9 3.7 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126178852|ref|YP_001046817.1| - 2.4e-06 27.4 11.9 7.3e-06 25.8 2.9 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126178852|ref|YP_001046817.1| - 3.1e-06 27.2 4.0 5.1e-06 26.6 2.9 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126178852|ref|YP_001046817.1| - 3.5e-06 27.5 6.6 0.00022 21.7 0.9 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126178852|ref|YP_001046817.1| - 2.4e-05 24.4 8.3 4.9e-05 23.4 8.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126178852|ref|YP_001046817.1| - 0.0001 23.2 6.0 0.054 14.4 1.2 2.8 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|126178852|ref|YP_001046817.1| - 0.00061 19.7 7.6 0.00068 19.6 1.9 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|126178852|ref|YP_001046817.1| - 0.0033 17.9 3.2 0.044 14.3 0.6 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|126178852|ref|YP_001046817.1| - 0.0096 16.6 10.8 0.15 12.9 8.2 3.0 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_19 PF06902.11 gi|126178852|ref|YP_001046817.1| - 0.17 12.0 4.3 0.82 9.8 0.2 2.5 2 0 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Fer4_22 PF17179.4 gi|126178852|ref|YP_001046817.1| - 0.33 11.8 5.4 0.43 11.4 0.9 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126178852|ref|YP_001046817.1| - 0.4 11.2 7.8 12 6.4 7.7 2.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Pur_DNA_glyco PF02245.16 gi|126178853|ref|YP_001046818.1| - 2e-69 232.5 0.0 2.3e-69 232.3 0.0 1.0 1 0 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) DUF4307 PF14155.6 gi|126178854|ref|YP_001046819.1| - 0.0072 16.1 0.1 0.039 13.8 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4307) Cytochrom_B_N_2 PF13631.6 gi|126178854|ref|YP_001046819.1| - 0.079 13.0 0.1 0.11 12.4 0.1 1.2 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB Cupin_2 PF07883.11 gi|126178855|ref|YP_001046820.1| - 8.6e-17 60.6 0.1 1.4e-16 60.0 0.1 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|126178855|ref|YP_001046820.1| - 0.0029 17.5 0.0 0.0037 17.2 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|126178855|ref|YP_001046820.1| - 0.016 14.9 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_6 PF12852.7 gi|126178855|ref|YP_001046820.1| - 0.2 11.4 0.0 0.21 11.3 0.0 1.1 1 0 0 1 1 1 0 Cupin AI-2E_transport PF01594.16 gi|126178857|ref|YP_001046822.1| - 3e-41 141.7 43.3 3.7e-41 141.3 43.3 1.0 1 0 0 1 1 1 1 AI-2E family transporter Shisa PF13908.6 gi|126178857|ref|YP_001046822.1| - 1.1 9.5 6.0 0.53 10.5 3.4 1.8 1 1 0 1 1 1 0 Wnt and FGF inhibitory regulator Na_H_Exchanger PF00999.21 gi|126178858|ref|YP_001046823.1| - 1.9e-47 161.9 49.9 2.4e-47 161.6 49.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.21 gi|126178858|ref|YP_001046823.1| - 1.6e-12 47.1 0.1 2.9e-12 46.2 0.1 1.5 1 0 0 1 1 1 1 TrkA-C domain PKD PF00801.20 gi|126178859|ref|YP_001046824.1| - 5.2e-48 160.8 30.4 4.5e-13 48.8 1.4 4.5 4 0 0 4 4 4 4 PKD domain DUF1344 PF07076.11 gi|126178859|ref|YP_001046824.1| - 3.5e-05 23.6 0.8 3.9 7.5 0.1 4.4 4 0 0 4 4 4 1 Protein of unknown function (DUF1344) CopC PF04234.12 gi|126178859|ref|YP_001046824.1| - 0.00028 21.8 8.8 3.8 8.6 0.1 4.5 4 0 0 4 4 4 1 CopC domain PKD_3 PF16820.5 gi|126178859|ref|YP_001046824.1| - 0.00091 18.9 10.4 2.1 8.1 0.1 4.7 4 1 0 4 4 4 2 PKD-like domain Big_6 PF17936.1 gi|126178859|ref|YP_001046824.1| - 0.011 16.0 11.6 5.7 7.3 0.1 4.8 4 1 0 4 4 4 0 Bacterial Ig domain Phage_DNA_bind PF02303.17 gi|126178859|ref|YP_001046824.1| - 0.013 15.8 0.0 2.2 8.6 0.0 3.4 4 0 0 4 4 4 0 Helix-destabilising protein PD40 PF07676.12 gi|126178859|ref|YP_001046824.1| - 0.031 14.2 0.7 0.55 10.2 0.5 2.9 2 0 0 2 2 2 0 WD40-like Beta Propeller Repeat TcfC PF16967.5 gi|126178859|ref|YP_001046824.1| - 0.033 13.7 0.3 39 3.8 0.0 3.8 4 0 0 4 4 4 0 E-set like domain DUF807 PF05660.11 gi|126178859|ref|YP_001046824.1| - 0.12 12.4 4.2 27 4.7 0.0 4.0 3 1 1 4 4 4 0 Coxiella burnetii protein of unknown function (DUF807) Rad52_Rad22 PF04098.15 gi|126178859|ref|YP_001046824.1| - 1.7 8.5 3.1 67 3.4 0.2 3.5 4 0 0 4 4 4 0 Rad52/22 family double-strand break repair protein MBG PF17883.1 gi|126178859|ref|YP_001046824.1| - 1.9 9.2 17.4 24 5.6 0.1 5.2 3 1 2 5 5 5 0 MBG domain Calycin_like PF13944.6 gi|126178859|ref|YP_001046824.1| - 3.3 8.0 11.0 46 4.3 0.2 4.7 2 2 3 5 5 5 0 Calycin-like beta-barrel domain DUF5011 PF16403.5 gi|126178859|ref|YP_001046824.1| - 4.1 7.6 15.2 3.3 7.9 0.5 4.2 4 0 0 4 4 4 0 Domain of unknown function (DUF5011) Cadherin-like PF12733.7 gi|126178859|ref|YP_001046824.1| - 6.4 7.4 10.6 5 7.7 0.8 3.9 2 2 2 4 4 4 0 Cadherin-like beta sandwich domain MFS_1 PF07690.16 gi|126178860|ref|YP_001046825.1| - 4.9e-52 177.0 56.7 4.9e-52 177.0 56.7 2.4 1 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|126178860|ref|YP_001046825.1| - 1e-09 37.8 40.9 6.1e-08 31.9 17.0 2.7 2 1 0 2 2 2 2 Sugar (and other) transporter OATP PF03137.20 gi|126178860|ref|YP_001046825.1| - 0.011 14.0 26.4 0.024 12.9 4.7 3.4 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Trep_Strep PF09605.10 gi|126178861|ref|YP_001046826.1| - 0.11 12.5 18.0 0.16 11.9 15.3 1.9 1 1 1 2 2 2 0 Hypothetical bacterial integral membrane protein (Trep_Strep) Phage_holin_3_6 PF07332.11 gi|126178861|ref|YP_001046826.1| - 1 9.4 20.2 0.89 9.6 7.4 2.1 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III PAS_4 PF08448.10 gi|126178862|ref|YP_001046827.1| - 7e-52 174.3 6.2 7.4e-17 61.6 0.0 5.6 6 0 0 6 6 5 4 PAS fold PAS PF00989.25 gi|126178862|ref|YP_001046827.1| - 3.9e-38 129.9 1.4 8.1e-14 51.6 0.0 5.0 3 1 1 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|126178862|ref|YP_001046827.1| - 3.6e-35 120.4 0.0 8.7e-10 38.8 0.0 4.8 5 0 0 5 5 4 4 PAS domain PAS_3 PF08447.12 gi|126178862|ref|YP_001046827.1| - 7.7e-22 77.4 0.0 9.3e-12 45.1 0.0 4.1 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|126178862|ref|YP_001046827.1| - 1.8e-21 75.7 0.1 5.9e-05 23.0 0.0 4.9 5 0 0 5 5 5 3 PAS domain HATPase_c PF02518.26 gi|126178862|ref|YP_001046827.1| - 3.9e-21 75.6 0.0 1e-20 74.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.6 gi|126178862|ref|YP_001046827.1| - 2.3e-05 24.9 0.0 0.018 15.6 0.0 3.7 3 0 0 3 3 3 1 PAS domain PAS_11 PF14598.6 gi|126178862|ref|YP_001046827.1| - 0.0012 18.9 0.0 0.0063 16.6 0.0 2.1 2 0 0 2 2 2 1 PAS domain sCache_3_3 PF17202.4 gi|126178862|ref|YP_001046827.1| - 0.0024 18.3 0.0 0.0076 16.7 0.0 1.8 1 0 0 1 1 1 1 Single cache domain 3 PAS_7 PF12860.7 gi|126178862|ref|YP_001046827.1| - 0.0035 17.5 5.8 12 6.0 0.0 6.4 6 2 0 6 6 6 0 PAS fold HATPase_c_2 PF13581.6 gi|126178862|ref|YP_001046827.1| - 0.0066 16.4 0.7 0.017 15.0 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|126178862|ref|YP_001046827.1| - 0.037 13.9 0.0 0.11 12.4 0.0 1.8 1 0 0 1 1 1 0 GHKL domain MLTR_LBD PF17765.1 gi|126178862|ref|YP_001046827.1| - 0.048 13.8 5.6 1.8 8.6 0.0 3.9 3 1 1 5 5 4 0 MmyB-like transcription regulator ligand binding domain E2F_TDP PF02319.20 gi|126178862|ref|YP_001046827.1| - 0.14 12.2 0.5 0.5 10.5 0.5 1.9 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain Cache_3-Cache_2 PF17201.4 gi|126178862|ref|YP_001046827.1| - 0.22 10.7 0.0 0.22 10.7 0.0 2.4 3 0 0 3 3 3 0 Cache 3/Cache 2 fusion domain FAM165 PF14981.6 gi|126178862|ref|YP_001046827.1| - 0.44 10.4 8.1 13 5.6 0.1 3.6 3 0 0 3 3 3 0 FAM165 family HMMR_N PF15905.5 gi|126178862|ref|YP_001046827.1| - 1.2 8.6 17.1 0.015 14.8 5.6 2.5 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal HIP1_clath_bdg PF16515.5 gi|126178862|ref|YP_001046827.1| - 1.8 9.2 28.9 0.96 10.1 9.2 3.4 3 0 0 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DUF4407 PF14362.6 gi|126178862|ref|YP_001046827.1| - 2.6 7.3 12.4 0.27 10.5 1.2 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4407) DUF3450 PF11932.8 gi|126178862|ref|YP_001046827.1| - 2.8 7.2 18.6 1.5 8.0 7.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) IFT57 PF10498.9 gi|126178862|ref|YP_001046827.1| - 3.3 6.6 11.4 0.22 10.4 4.5 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Sec34 PF04136.15 gi|126178862|ref|YP_001046827.1| - 4.8 7.1 10.3 2.9 7.8 6.5 2.4 2 0 0 2 2 2 0 Sec34-like family Peptidase_C69 PF03577.15 gi|126178863|ref|YP_001046828.1| - 4.7e-47 160.8 0.0 1.8e-45 155.6 0.0 2.0 2 0 0 2 2 2 2 Peptidase family C69 DLH PF01738.18 gi|126178864|ref|YP_001046829.1| - 3.3e-33 115.1 0.4 6.4e-31 107.6 0.4 2.1 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.21 gi|126178864|ref|YP_001046829.1| - 1.1e-10 41.4 0.0 1.9e-07 30.8 0.0 2.2 1 1 1 2 2 2 2 Prolyl oligopeptidase family Chlorophyllase2 PF12740.7 gi|126178864|ref|YP_001046829.1| - 3e-08 32.9 0.0 4.3e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 Chlorophyllase enzyme Chlorophyllase PF07224.11 gi|126178864|ref|YP_001046829.1| - 1.4e-07 30.9 0.0 2.1e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase BAAT_C PF08840.11 gi|126178864|ref|YP_001046829.1| - 5.8e-06 26.4 0.0 0.0066 16.4 0.0 2.2 1 1 1 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal Hydrolase_4 PF12146.8 gi|126178864|ref|YP_001046829.1| - 0.00023 20.5 0.0 0.11 11.8 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|126178864|ref|YP_001046829.1| - 0.012 16.2 0.0 0.076 13.6 0.0 1.8 1 1 1 2 2 2 0 Alpha/beta hydrolase family Abhydrolase_3 PF07859.13 gi|126178864|ref|YP_001046829.1| - 0.014 15.3 0.0 0.09 12.6 0.0 2.0 1 1 1 2 2 2 0 alpha/beta hydrolase fold PAF-AH_p_II PF03403.13 gi|126178864|ref|YP_001046829.1| - 0.1 11.1 0.0 0.12 10.9 0.0 1.2 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II DUF169 PF02596.15 gi|126178865|ref|YP_001046830.1| - 1.9e-34 119.4 0.0 2.5e-34 119.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 NADH-G_4Fe-4S_3 PF10588.9 gi|126178866|ref|YP_001046831.1| - 0.071 12.7 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DUF1673 PF07895.11 gi|126178867|ref|YP_001046832.1| - 3.8e-09 36.6 0.5 2e-07 31.0 0.5 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1673) LapA_dom PF06305.11 gi|126178867|ref|YP_001046832.1| - 0.015 15.1 1.2 0.015 15.1 1.2 2.8 2 1 2 4 4 4 0 Lipopolysaccharide assembly protein A domain MitoNEET_N PF10660.9 gi|126178867|ref|YP_001046832.1| - 0.04 13.9 0.1 0.1 12.6 0.1 1.6 1 0 0 1 1 1 0 Iron-containing outer mitochondrial membrane protein N-terminus Trp_oprn_chp PF09534.10 gi|126178867|ref|YP_001046832.1| - 0.18 11.6 13.5 0.023 14.5 4.8 2.5 1 1 1 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Deltameth_res PF16020.5 gi|126178867|ref|YP_001046832.1| - 1.7 8.5 4.8 2.8 7.9 0.1 2.7 3 0 0 3 3 3 0 Deltamethrin resistance DUF1673 PF07895.11 gi|126178868|ref|YP_001046833.1| - 2.5e-51 174.6 0.0 3.1e-51 174.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) bPH_6 PF10756.9 gi|126178868|ref|YP_001046833.1| - 0.0017 18.4 0.1 0.0042 17.1 0.1 1.6 1 0 0 1 1 1 1 Bacterial PH domain DUF4131 PF13567.6 gi|126178868|ref|YP_001046833.1| - 0.018 14.7 4.8 0.14 11.8 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) bPH_5 PF10882.8 gi|126178868|ref|YP_001046833.1| - 0.023 14.7 0.0 2.8 8.1 0.0 2.3 2 0 0 2 2 2 0 Bacterial PH domain DUF3318 PF11780.8 gi|126178868|ref|YP_001046833.1| - 0.088 12.8 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3318) DUF3093 PF11292.8 gi|126178868|ref|YP_001046833.1| - 0.2 11.9 4.8 8.6 6.6 1.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3093) DUF4401 PF14351.6 gi|126178868|ref|YP_001046833.1| - 0.63 9.3 8.2 0.37 10.0 3.4 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4401) DUF4282 PF14110.6 gi|126178868|ref|YP_001046833.1| - 9.6 7.0 8.6 2.9 8.7 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) DUF1673 PF07895.11 gi|126178869|ref|YP_001046834.1| - 0.00011 22.0 1.2 0.00035 20.4 1.2 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1673) DUF1673 PF07895.11 gi|126178870|ref|YP_001046835.1| - 1.1e-17 64.6 0.0 1.4e-17 64.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) DUF2244 PF10003.9 gi|126178870|ref|YP_001046835.1| - 0.00085 19.0 3.2 0.00085 19.0 3.2 2.3 2 0 0 2 2 2 1 Integral membrane protein (DUF2244) MASE5 PF17178.4 gi|126178870|ref|YP_001046835.1| - 0.031 14.1 6.6 1 9.1 0.3 2.1 2 0 0 2 2 2 0 Membrane-associated sensor Cortexin PF11057.8 gi|126178870|ref|YP_001046835.1| - 0.25 11.2 2.3 0.74 9.7 0.0 2.3 2 0 0 2 2 2 0 Cortexin of kidney ABC_tran PF00005.27 gi|126178871|ref|YP_001046836.1| - 1.9e-25 89.9 0.0 2.6e-25 89.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126178871|ref|YP_001046836.1| - 1.4e-14 54.6 4.1 3.5e-09 36.9 0.8 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|126178871|ref|YP_001046836.1| - 5.3e-05 23.7 0.0 9.4e-05 22.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|126178871|ref|YP_001046836.1| - 0.00016 22.2 0.0 0.00021 21.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|126178871|ref|YP_001046836.1| - 0.00018 21.2 0.0 0.00053 19.7 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|126178871|ref|YP_001046836.1| - 0.00038 20.3 0.0 0.28 10.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|126178871|ref|YP_001046836.1| - 0.00053 19.5 0.0 0.0041 16.6 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|126178871|ref|YP_001046836.1| - 0.0012 19.2 0.1 0.025 14.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|126178871|ref|YP_001046836.1| - 0.0024 18.0 0.0 0.0054 16.8 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|126178871|ref|YP_001046836.1| - 0.0083 15.7 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF87 PF01935.17 gi|126178871|ref|YP_001046836.1| - 0.0087 16.2 0.0 0.017 15.3 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain DUF815 PF05673.13 gi|126178871|ref|YP_001046836.1| - 0.0092 15.2 0.0 0.016 14.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RsgA_GTPase PF03193.16 gi|126178871|ref|YP_001046836.1| - 0.014 15.3 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 gi|126178871|ref|YP_001046836.1| - 0.04 14.3 0.0 0.12 12.8 0.0 1.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|126178871|ref|YP_001046836.1| - 0.042 13.6 0.0 0.068 12.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain CoA_trans PF01144.23 gi|126178871|ref|YP_001046836.1| - 0.044 13.2 0.0 0.078 12.4 0.0 1.4 1 0 0 1 1 1 0 Coenzyme A transferase IstB_IS21 PF01695.17 gi|126178871|ref|YP_001046836.1| - 0.046 13.5 0.0 0.1 12.3 0.0 1.5 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_28 PF13521.6 gi|126178871|ref|YP_001046836.1| - 0.1 12.8 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|126178871|ref|YP_001046836.1| - 0.11 12.0 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region Rad17 PF03215.15 gi|126178871|ref|YP_001046836.1| - 0.15 12.0 0.0 1.6 8.6 0.0 2.0 2 0 0 2 2 2 0 Rad17 P-loop domain Bac_luciferase PF00296.20 gi|126178872|ref|YP_001046837.1| - 1.3e-57 195.6 0.0 1.6e-57 195.3 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Putative_PNPOx PF01243.20 gi|126178874|ref|YP_001046839.1| - 0.0024 18.0 0.0 0.0038 17.4 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase adh_short_C2 PF13561.6 gi|126178875|ref|YP_001046840.1| - 5.2e-64 216.0 7.8 6e-64 215.8 7.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|126178875|ref|YP_001046840.1| - 4.4e-59 199.2 2.8 5.4e-59 198.9 2.8 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|126178875|ref|YP_001046840.1| - 1.2e-14 54.6 0.4 1.7e-14 54.1 0.4 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|126178875|ref|YP_001046840.1| - 5.4e-05 22.8 0.2 7.5e-05 22.3 0.2 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|126178875|ref|YP_001046840.1| - 0.00046 19.4 0.1 0.00067 18.9 0.1 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein DFP PF04127.15 gi|126178875|ref|YP_001046840.1| - 0.00068 19.5 0.6 0.0012 18.7 0.6 1.4 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein 3HCDH_N PF02737.18 gi|126178875|ref|YP_001046840.1| - 0.0018 18.2 2.2 0.0043 17.0 2.2 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|126178875|ref|YP_001046840.1| - 0.0039 17.4 0.4 0.0085 16.3 0.4 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|126178875|ref|YP_001046840.1| - 0.0067 16.7 0.4 0.01 16.1 0.4 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|126178875|ref|YP_001046840.1| - 0.0069 16.9 0.6 0.0069 16.9 0.6 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|126178875|ref|YP_001046840.1| - 0.059 13.6 1.2 0.084 13.1 0.4 1.6 2 0 0 2 2 2 0 TrkA-N domain THF_DHG_CYH_C PF02882.19 gi|126178875|ref|YP_001046840.1| - 0.066 12.5 0.5 0.13 11.5 0.2 1.8 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RmlD_sub_bind PF04321.17 gi|126178875|ref|YP_001046840.1| - 0.07 12.2 0.2 0.1 11.7 0.2 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain Shikimate_DH PF01488.20 gi|126178875|ref|YP_001046840.1| - 0.097 12.7 0.5 0.16 12.0 0.5 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase adh_short_C2 PF13561.6 gi|126178876|ref|YP_001046841.1| - 2.5e-69 233.4 0.9 3e-69 233.1 0.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|126178876|ref|YP_001046841.1| - 1e-55 188.2 1.5 1.3e-55 187.9 1.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|126178876|ref|YP_001046841.1| - 2e-14 53.9 0.8 2.8e-14 53.4 0.8 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|126178876|ref|YP_001046841.1| - 0.004 16.7 0.2 0.021 14.3 0.2 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Glyco_tran_WecB PF03808.13 gi|126178876|ref|YP_001046841.1| - 0.071 13.1 0.1 0.25 11.3 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferase WecB/TagA/CpsF family Adenine_deam_C PF13382.6 gi|126178876|ref|YP_001046841.1| - 3 7.1 5.7 0.31 10.4 0.9 1.7 2 0 0 2 2 2 0 Adenine deaminase C-terminal domain PFK PF00365.20 gi|126178877|ref|YP_001046842.1| - 1.2e-97 326.7 1.2 1.4e-97 326.5 1.2 1.0 1 0 0 1 1 1 1 Phosphofructokinase PGK PF00162.19 gi|126178878|ref|YP_001046843.1| - 5.8e-145 483.0 0.0 6.6e-145 482.8 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase PRC PF05239.16 gi|126178879|ref|YP_001046844.1| - 3.8e-18 65.3 0.1 4.8e-18 65.0 0.1 1.1 1 0 0 1 1 1 1 PRC-barrel domain ChaB PF06150.12 gi|126178880|ref|YP_001046845.1| - 4e-26 91.3 0.9 4.9e-26 91.1 0.9 1.1 1 0 0 1 1 1 1 ChaB Radical_SAM PF04055.21 gi|126178881|ref|YP_001046846.1| - 1.1e-22 81.2 0.2 2.1e-22 80.3 0.2 1.5 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|126178881|ref|YP_001046846.1| - 2.1e-08 34.2 0.2 5.7e-08 32.8 0.1 1.8 1 1 1 2 2 2 1 B12 binding domain Metallophos_2 PF12850.7 gi|126178882|ref|YP_001046847.1| - 1.3e-16 61.3 0.0 2e-16 60.6 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|126178882|ref|YP_001046847.1| - 9.2e-14 52.4 0.2 1.4e-13 51.8 0.2 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|126178882|ref|YP_001046847.1| - 8.6e-08 31.8 0.0 6.3e-07 29.0 0.0 1.9 1 1 1 2 2 2 1 Metallophosphoesterase, calcineurin superfamily CYTH PF01928.21 gi|126178883|ref|YP_001046848.1| - 7.7e-32 110.6 1.2 9.3e-32 110.4 1.2 1.0 1 0 0 1 1 1 1 CYTH domain DUF4973 PF16343.5 gi|126178883|ref|YP_001046848.1| - 0.09 12.8 0.0 0.15 12.1 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4973) AAA_16 PF13191.6 gi|126178884|ref|YP_001046849.1| - 4.9e-16 59.6 0.0 1.2e-15 58.3 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|126178884|ref|YP_001046849.1| - 4.2e-06 26.8 0.0 0.0062 16.5 0.0 2.5 2 0 0 2 2 2 2 NACHT domain AAA_22 PF13401.6 gi|126178884|ref|YP_001046849.1| - 4.6e-05 23.7 0.0 0.00019 21.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|126178884|ref|YP_001046849.1| - 0.00046 20.1 0.0 0.0011 18.9 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase RuvB_N PF05496.12 gi|126178884|ref|YP_001046849.1| - 0.0015 18.3 0.0 0.0071 16.1 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain ABC_tran PF00005.27 gi|126178884|ref|YP_001046849.1| - 0.0026 18.3 0.0 0.0045 17.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter MMR_HSR1 PF01926.23 gi|126178884|ref|YP_001046849.1| - 0.0027 17.7 0.0 0.012 15.7 0.0 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_35 PF14516.6 gi|126178884|ref|YP_001046849.1| - 0.0075 15.2 0.0 0.022 13.6 0.0 1.6 2 0 0 2 2 2 1 AAA-like domain AAA_28 PF13521.6 gi|126178884|ref|YP_001046849.1| - 0.013 15.8 0.0 0.054 13.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|126178884|ref|YP_001046849.1| - 0.016 15.1 0.0 0.096 12.6 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|126178884|ref|YP_001046849.1| - 0.017 14.6 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region NTPase_1 PF03266.15 gi|126178884|ref|YP_001046849.1| - 0.02 14.8 0.0 0.26 11.2 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA PF00004.29 gi|126178884|ref|YP_001046849.1| - 0.02 15.3 0.3 0.1 13.0 0.0 2.3 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) KAP_NTPase PF07693.14 gi|126178884|ref|YP_001046849.1| - 0.023 13.9 0.0 0.026 13.8 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_33 PF13671.6 gi|126178884|ref|YP_001046849.1| - 0.025 14.8 0.0 0.13 12.4 0.0 2.4 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|126178884|ref|YP_001046849.1| - 0.036 13.4 0.0 0.075 12.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|126178884|ref|YP_001046849.1| - 0.037 14.4 0.0 0.072 13.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 gi|126178884|ref|YP_001046849.1| - 0.039 13.1 0.0 0.44 9.7 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.6 gi|126178884|ref|YP_001046849.1| - 0.091 12.5 0.0 0.35 10.6 0.0 2.0 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|126178884|ref|YP_001046849.1| - 0.097 12.7 0.0 0.44 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MeaB PF03308.16 gi|126178884|ref|YP_001046849.1| - 0.11 11.5 0.0 0.23 10.4 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|126178884|ref|YP_001046849.1| - 0.13 12.0 0.0 0.34 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|126178884|ref|YP_001046849.1| - 0.21 10.4 0.0 0.34 9.8 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain FKBP_C PF00254.28 gi|126178885|ref|YP_001046850.1| - 1.4e-10 41.3 0.0 6.1e-10 39.3 0.0 1.9 1 1 1 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|126178885|ref|YP_001046850.1| - 5.8e-05 23.1 0.0 9.6e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 FKBP26_C-terminal FbpA PF05833.11 gi|126178886|ref|YP_001046851.1| - 2.1e-57 194.9 0.0 2.9e-57 194.5 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|126178886|ref|YP_001046851.1| - 1e-22 80.8 0.0 1.9e-22 80.0 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|126178886|ref|YP_001046851.1| - 5.3e-06 26.6 0.0 1.2e-05 25.5 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain DUF2267 PF10025.9 gi|126178886|ref|YP_001046851.1| - 0.36 11.1 0.0 0.36 11.1 0.0 2.7 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2267) eRF1_1 PF03463.15 gi|126178887|ref|YP_001046852.1| - 6.9e-23 81.1 0.0 1.2e-22 80.3 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|126178887|ref|YP_001046852.1| - 3.7e-18 66.0 0.9 1.3e-17 64.3 0.3 2.2 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|126178887|ref|YP_001046852.1| - 0.007 16.7 0.0 0.021 15.1 0.0 1.7 1 1 1 2 2 2 1 eRF1 domain 2 Ribosomal_L7Ae PF01248.26 gi|126178887|ref|YP_001046852.1| - 0.11 12.2 0.1 0.51 10.1 0.1 2.0 1 1 1 2 2 2 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DUF3040 PF11239.8 gi|126178888|ref|YP_001046853.1| - 0.052 13.8 2.5 0.72 10.2 2.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) ABC_tran PF00005.27 gi|126178889|ref|YP_001046854.1| - 2.5e-38 131.7 0.0 2.5e-19 70.1 0.0 2.3 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|126178889|ref|YP_001046854.1| - 8.9e-16 58.0 2.0 3.8e-07 29.8 0.0 3.6 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|126178889|ref|YP_001046854.1| - 3e-11 43.0 2.2 8.5e-11 41.5 2.2 1.8 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|126178889|ref|YP_001046854.1| - 4.2e-09 36.6 4.1 0.042 13.7 0.1 4.3 3 1 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system Fer4 PF00037.27 gi|126178889|ref|YP_001046854.1| - 8.6e-08 31.7 2.8 8.6e-08 31.7 2.8 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|126178889|ref|YP_001046854.1| - 1.3e-07 31.4 11.1 3e-06 27.1 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126178889|ref|YP_001046854.1| - 4e-05 23.7 9.0 6.7e-05 22.9 9.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_16 PF13191.6 gi|126178889|ref|YP_001046854.1| - 0.00025 21.5 0.4 0.36 11.2 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain AAA_24 PF13479.6 gi|126178889|ref|YP_001046854.1| - 0.00041 20.1 0.4 0.71 9.6 0.1 2.6 2 1 0 2 2 2 2 AAA domain Fer4_9 PF13187.6 gi|126178889|ref|YP_001046854.1| - 0.00091 19.3 6.6 0.0019 18.3 6.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Rad17 PF03215.15 gi|126178889|ref|YP_001046854.1| - 0.001 19.0 0.2 0.065 13.2 0.1 2.8 2 1 1 3 3 3 1 Rad17 P-loop domain Fer4_2 PF12797.7 gi|126178889|ref|YP_001046854.1| - 0.0011 18.9 1.5 0.0011 18.9 1.5 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain RNA_helicase PF00910.22 gi|126178889|ref|YP_001046854.1| - 0.0012 19.3 0.0 2.1 8.8 0.0 2.4 2 0 0 2 2 2 2 RNA helicase Fer4_10 PF13237.6 gi|126178889|ref|YP_001046854.1| - 0.0015 18.6 1.1 0.0015 18.6 1.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain RsgA_GTPase PF03193.16 gi|126178889|ref|YP_001046854.1| - 0.0015 18.5 0.6 2 8.3 0.1 2.6 3 0 0 3 3 2 2 RsgA GTPase Fer4_7 PF12838.7 gi|126178889|ref|YP_001046854.1| - 0.0019 18.8 8.0 0.0064 17.1 8.3 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_29 PF13555.6 gi|126178889|ref|YP_001046854.1| - 0.0032 17.2 2.5 0.74 9.6 0.2 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|126178889|ref|YP_001046854.1| - 0.0038 17.7 0.0 3.7 8.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.6 gi|126178889|ref|YP_001046854.1| - 0.011 15.9 0.0 4.5 7.6 0.0 3.1 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 gi|126178889|ref|YP_001046854.1| - 0.013 15.7 0.2 6.8 7.0 0.0 2.7 2 1 0 2 2 2 0 AAA domain MukB PF04310.12 gi|126178889|ref|YP_001046854.1| - 0.027 14.3 0.5 2.4 7.9 0.0 2.6 2 0 0 2 2 2 0 MukB N-terminal AAA_33 PF13671.6 gi|126178889|ref|YP_001046854.1| - 0.029 14.6 0.6 2.6 8.2 0.1 3.3 4 1 0 4 4 3 0 AAA domain AAA PF00004.29 gi|126178889|ref|YP_001046854.1| - 0.035 14.5 0.0 9.3 6.7 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|126178889|ref|YP_001046854.1| - 0.052 13.3 0.1 7.7 6.1 0.0 2.4 3 0 0 3 3 2 0 AAA ATPase domain Fer4_16 PF13484.6 gi|126178889|ref|YP_001046854.1| - 0.07 14.1 1.6 0.07 14.1 1.6 2.4 1 1 0 2 2 2 0 4Fe-4S double cluster binding domain NACHT PF05729.12 gi|126178889|ref|YP_001046854.1| - 0.11 12.4 3.0 0.55 10.1 0.1 2.6 2 1 0 2 2 2 0 NACHT domain AAA_5 PF07728.14 gi|126178889|ref|YP_001046854.1| - 0.11 12.5 0.1 8.3 6.4 0.0 2.8 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) DUF87 PF01935.17 gi|126178889|ref|YP_001046854.1| - 0.13 12.4 2.8 8.8 6.4 0.0 2.6 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_14 PF13173.6 gi|126178889|ref|YP_001046854.1| - 0.14 12.2 0.1 35 4.4 0.0 3.1 3 0 0 3 3 3 0 AAA domain AAA_28 PF13521.6 gi|126178889|ref|YP_001046854.1| - 0.15 12.3 0.1 23 5.2 0.0 2.8 2 0 0 2 2 2 0 AAA domain Fer4_4 PF12800.7 gi|126178889|ref|YP_001046854.1| - 0.49 11.0 12.6 0.17 12.5 3.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_25 PF13481.6 gi|126178889|ref|YP_001046854.1| - 0.81 9.2 3.1 5.8 6.4 0.6 2.9 2 1 0 2 2 2 0 AAA domain Fer4_22 PF17179.4 gi|126178889|ref|YP_001046854.1| - 1.9 9.4 5.7 0.45 11.4 2.3 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126178889|ref|YP_001046854.1| - 9.4 6.9 9.7 50 4.6 9.7 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Reg_prop PF07494.11 gi|126178890|ref|YP_001046855.1| - 2.3e-07 30.2 0.3 0.47 10.9 0.0 5.0 4 0 0 4 4 4 3 Two component regulator propeller CheD PF03975.13 gi|126178891|ref|YP_001046856.1| - 5.5e-30 103.7 0.0 6.6e-30 103.4 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.12 gi|126178892|ref|YP_001046857.1| - 7.6e-18 64.1 5.1 6.2e-10 38.8 0.2 2.6 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|126178892|ref|YP_001046857.1| - 2.8e-09 37.0 3.4 0.00013 22.0 1.2 2.8 1 1 1 2 2 2 2 Chemotaxis phosphatase CheX CheW PF01584.19 gi|126178893|ref|YP_001046858.1| - 2.5e-20 72.5 0.7 5.5e-20 71.4 0.7 1.6 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.26 gi|126178893|ref|YP_001046858.1| - 7e-20 71.6 0.1 1.7e-19 70.3 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.23 gi|126178893|ref|YP_001046858.1| - 1.6e-19 70.0 0.2 1.6e-19 70.0 0.2 2.5 3 0 0 3 3 3 1 Hpt domain P2 PF07194.11 gi|126178893|ref|YP_001046858.1| - 3e-16 59.2 0.0 1.1e-15 57.4 0.0 2.0 1 0 0 1 1 1 1 P2 response regulator binding domain H-kinase_dim PF02895.14 gi|126178893|ref|YP_001046858.1| - 4.2e-12 46.3 1.9 4.2e-12 46.3 1.9 1.9 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_2 PF13581.6 gi|126178893|ref|YP_001046858.1| - 0.012 15.6 0.1 0.033 14.2 0.1 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|126178893|ref|YP_001046858.1| - 0.032 14.0 0.0 0.067 13.0 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|126178893|ref|YP_001046858.1| - 0.12 12.3 0.0 0.42 10.5 0.0 1.9 1 1 0 1 1 1 0 GHKL domain CheB_methylest PF01339.17 gi|126178894|ref|YP_001046859.1| - 3e-55 186.5 0.3 9.3e-54 181.7 0.2 2.3 3 0 0 3 3 3 1 CheB methylesterase Response_reg PF00072.24 gi|126178894|ref|YP_001046859.1| - 3.8e-25 88.2 0.2 8.3e-25 87.1 0.2 1.5 1 0 0 1 1 1 1 Response regulator receiver domain Ad_Cy_reg PF16701.5 gi|126178894|ref|YP_001046859.1| - 0.061 13.1 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Adenylate cyclase regulatory domain Response_reg PF00072.24 gi|126178895|ref|YP_001046860.1| - 4.1e-30 104.2 0.3 4.6e-30 104.1 0.3 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheF-arch PF04283.12 gi|126178896|ref|YP_001046861.1| - 3.5e-14 53.1 0.1 5e-14 52.6 0.1 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea Rtt106 PF08512.12 gi|126178896|ref|YP_001046861.1| - 0.023 15.1 0.0 0.043 14.2 0.0 1.4 1 0 0 1 1 1 0 Histone chaperone Rttp106-like T2SSF PF00482.23 gi|126178898|ref|YP_001046863.1| - 0.0044 17.0 13.8 0.077 13.0 0.1 4.6 4 2 1 5 5 5 2 Type II secretion system (T2SS), protein F Spore_YtrH PF14034.6 gi|126178898|ref|YP_001046863.1| - 0.027 14.6 0.1 0.027 14.6 0.1 3.1 4 0 0 4 4 4 0 Sporulation protein YtrH Thymidylate_kin PF02223.17 gi|126178898|ref|YP_001046863.1| - 0.18 11.5 0.1 0.75 9.4 0.0 2.0 2 0 0 2 2 2 0 Thymidylate kinase T2SSE PF00437.20 gi|126178899|ref|YP_001046864.1| - 2.5e-45 154.7 0.0 5e-45 153.7 0.0 1.5 2 0 0 2 2 2 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|126178899|ref|YP_001046864.1| - 0.0011 19.5 0.0 0.0053 17.3 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_29 PF13555.6 gi|126178899|ref|YP_001046864.1| - 0.0046 16.7 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|126178899|ref|YP_001046864.1| - 0.011 15.5 0.0 1.5 8.4 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|126178899|ref|YP_001046864.1| - 0.011 16.0 0.0 0.027 14.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|126178899|ref|YP_001046864.1| - 0.046 13.0 0.0 0.14 11.4 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_16 PF13191.6 gi|126178899|ref|YP_001046864.1| - 0.081 13.3 0.0 0.19 12.1 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain ATPase PF06745.13 gi|126178900|ref|YP_001046865.1| - 8e-25 87.5 0.3 9.3e-25 87.3 0.3 1.0 1 0 0 1 1 1 1 KaiC Rad51 PF08423.11 gi|126178900|ref|YP_001046865.1| - 1.2e-06 28.0 0.8 1.3e-05 24.6 0.8 2.0 1 1 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|126178900|ref|YP_001046865.1| - 1.3e-06 28.2 0.0 3e-06 26.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain PAXNEB PF05625.11 gi|126178900|ref|YP_001046865.1| - 6.3e-05 22.3 2.0 0.00031 20.0 0.2 2.0 1 1 1 2 2 2 1 PAXNEB protein DnaB_C PF03796.15 gi|126178900|ref|YP_001046865.1| - 7.4e-05 22.2 0.1 0.0039 16.6 0.0 2.1 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain Elong_Iki1 PF10483.9 gi|126178900|ref|YP_001046865.1| - 0.0021 17.6 0.1 0.0025 17.4 0.1 1.1 1 0 0 1 1 1 1 Elongator subunit Iki1 DUF835 PF05763.12 gi|126178900|ref|YP_001046865.1| - 0.0085 15.8 0.3 0.015 15.1 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF835) AAA_22 PF13401.6 gi|126178900|ref|YP_001046865.1| - 0.053 13.8 0.0 0.14 12.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|126178900|ref|YP_001046865.1| - 0.15 11.8 1.9 0.18 11.5 0.1 1.7 1 1 1 2 2 2 0 AAA ATPase domain Arch_flagellin PF01917.16 gi|126178902|ref|YP_001046867.1| - 1.7e-09 38.1 0.2 2.1e-09 37.8 0.2 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Pertactin PF03212.14 gi|126178902|ref|YP_001046867.1| - 0.0022 17.9 0.1 0.0033 17.4 0.1 1.2 1 0 0 1 1 1 1 Pertactin Arch_fla_DE PF04659.13 gi|126178903|ref|YP_001046868.1| - 2.7e-05 24.0 0.0 5.5e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Archaeal flagella protein CLZ PF16526.5 gi|126178903|ref|YP_001046868.1| - 0.042 14.2 0.1 0.095 13.1 0.1 1.6 1 0 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CdvA PF18822.1 gi|126178903|ref|YP_001046868.1| - 0.048 13.5 0.1 0.12 12.2 0.0 1.7 2 0 0 2 2 2 0 CdvA-like coiled-coil domain Rsm22 PF09243.10 gi|126178903|ref|YP_001046868.1| - 0.16 11.2 0.0 0.22 10.8 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial small ribosomal subunit Rsm22 Polysacc_synt PF01943.17 gi|126178904|ref|YP_001046869.1| - 1.6e-14 53.9 23.9 1.6e-14 53.9 23.9 2.6 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|126178904|ref|YP_001046869.1| - 1.4e-06 27.8 17.5 1.4e-06 27.8 17.5 3.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein FrhB_FdhB_C PF04432.13 gi|126178905|ref|YP_001046870.1| - 1.8e-30 105.8 0.0 3.3e-30 105.0 0.0 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|126178905|ref|YP_001046870.1| - 3.8e-17 62.2 0.0 7e-17 61.4 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.27 gi|126178905|ref|YP_001046870.1| - 5.4e-08 32.3 13.0 4.1e-06 26.4 1.7 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126178905|ref|YP_001046870.1| - 3.8e-05 23.7 10.0 3.8e-05 23.7 10.0 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126178905|ref|YP_001046870.1| - 0.00017 22.0 8.3 0.015 15.8 0.6 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126178905|ref|YP_001046870.1| - 0.00044 20.4 20.3 0.0014 18.8 12.1 3.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126178905|ref|YP_001046870.1| - 0.00066 20.2 10.9 0.00066 20.2 10.9 3.1 4 1 0 4 4 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126178905|ref|YP_001046870.1| - 0.00072 19.5 0.8 0.00072 19.5 0.8 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126178905|ref|YP_001046870.1| - 0.0019 18.2 12.7 0.0019 18.2 12.7 3.4 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126178905|ref|YP_001046870.1| - 0.0039 17.2 22.2 0.018 15.1 1.9 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|126178905|ref|YP_001046870.1| - 0.0045 17.7 5.5 0.0063 17.2 0.9 2.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|126178905|ref|YP_001046870.1| - 0.016 15.7 1.3 0.016 15.7 1.3 3.6 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|126178905|ref|YP_001046870.1| - 0.036 14.6 1.0 0.036 14.6 1.0 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|126178905|ref|YP_001046870.1| - 0.14 13.0 0.6 0.14 13.0 0.6 3.4 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126178905|ref|YP_001046870.1| - 0.44 11.0 0.1 0.44 11.0 0.1 3.6 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126178905|ref|YP_001046870.1| - 0.64 11.1 24.8 0.23 12.5 4.4 3.4 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|126178905|ref|YP_001046870.1| - 1.8 9.5 18.1 1.2 10.1 4.0 3.3 3 1 1 4 4 3 0 4Fe-4S double cluster binding domain PS_pyruv_trans PF04230.13 gi|126178906|ref|YP_001046871.1| - 2.8e-50 171.9 0.8 3.6e-50 171.5 0.8 1.1 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase Glycos_transf_1 PF00534.20 gi|126178907|ref|YP_001046872.1| - 4.8e-44 149.9 0.0 8.3e-44 149.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126178907|ref|YP_001046872.1| - 5.2e-32 111.1 0.2 1.4e-31 109.7 0.1 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126178907|ref|YP_001046872.1| - 1e-17 64.7 0.0 3.2e-17 63.1 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|126178907|ref|YP_001046872.1| - 1.5e-10 41.8 0.0 2.3e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|126178907|ref|YP_001046872.1| - 1.2e-08 35.2 0.0 3.2e-07 30.7 0.0 2.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|126178907|ref|YP_001046872.1| - 4.3e-08 33.3 0.0 8.5e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_20 PF00982.21 gi|126178907|ref|YP_001046872.1| - 0.0019 16.9 0.0 0.45 9.1 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase family 20 Trm56 PF01994.16 gi|126178907|ref|YP_001046872.1| - 0.0069 16.3 0.0 0.017 15.0 0.0 1.7 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 DUF3492 PF11997.8 gi|126178907|ref|YP_001046872.1| - 0.0086 15.8 0.1 0.017 14.8 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3492) Epimerase_2 PF02350.19 gi|126178907|ref|YP_001046872.1| - 0.038 12.9 0.0 0.058 12.2 0.0 1.2 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_5 PF08323.11 gi|126178907|ref|YP_001046872.1| - 0.045 13.4 0.2 0.13 11.9 0.2 1.8 1 1 0 1 1 1 0 Starch synthase catalytic domain DUF354 PF04007.12 gi|126178909|ref|YP_001046874.1| - 1.1e-21 77.3 0.0 1.2e-21 77.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.6 gi|126178909|ref|YP_001046874.1| - 7.7e-05 22.8 0.0 0.00013 22.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_28 PF03033.20 gi|126178909|ref|YP_001046874.1| - 0.00015 21.8 0.0 0.0003 20.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Glyco_hydro_65C PF03633.15 gi|126178909|ref|YP_001046874.1| - 0.04 13.8 0.1 0.12 12.3 0.1 1.8 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain Glyco_transf_4 PF13439.6 gi|126178909|ref|YP_001046874.1| - 0.062 13.3 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.26 gi|126178910|ref|YP_001046875.1| - 3e-23 82.5 0.0 4.1e-23 82.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|126178910|ref|YP_001046875.1| - 2.1e-07 31.1 0.1 3.1e-07 30.5 0.1 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|126178910|ref|YP_001046875.1| - 0.093 13.3 0.0 0.16 12.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 PMT_2 PF13231.6 gi|126178911|ref|YP_001046876.1| - 1.2e-06 28.8 13.7 1.2e-06 28.8 13.7 5.1 4 1 1 6 6 6 3 Dolichyl-phosphate-mannose-protein mannosyltransferase Arch_flagellin PF01917.16 gi|126178912|ref|YP_001046877.1| - 1.7e-43 148.7 6.9 1.9e-43 148.5 6.9 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|126178913|ref|YP_001046878.1| - 9.2e-46 156.0 6.7 1e-45 155.8 6.7 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin End_N_terminal PF12218.8 gi|126178913|ref|YP_001046878.1| - 0.028 14.1 0.1 0.6 9.8 0.0 2.3 2 0 0 2 2 2 0 N terminal extension of bacteriophage endosialidase Arginase PF00491.21 gi|126178915|ref|YP_001046880.1| - 3.7e-68 230.0 0.5 4.5e-68 229.8 0.5 1.0 1 0 0 1 1 1 1 Arginase family Lipase_GDSL_2 PF13472.6 gi|126178915|ref|YP_001046880.1| - 0.12 12.7 0.1 0.35 11.2 0.1 1.8 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family eIF-5a PF01287.20 gi|126178916|ref|YP_001046881.1| - 0.00026 21.0 0.1 0.00053 20.0 0.1 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|126178916|ref|YP_001046881.1| - 0.00089 19.2 0.0 0.0017 18.3 0.0 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain Inositol_P PF00459.25 gi|126178917|ref|YP_001046882.1| - 2.6e-34 119.0 0.1 3.2e-34 118.7 0.1 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|126178917|ref|YP_001046882.1| - 0.0039 16.7 0.0 0.0054 16.2 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Maf PF02545.14 gi|126178917|ref|YP_001046882.1| - 0.13 12.1 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Maf-like protein DUF1515 PF07439.11 gi|126178917|ref|YP_001046882.1| - 0.15 12.1 0.2 0.46 10.5 0.0 1.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1515) NAD_kinase PF01513.21 gi|126178918|ref|YP_001046883.1| - 1.9e-51 175.0 0.0 2.3e-51 174.7 0.0 1.2 1 0 0 1 1 1 1 ATP-NAD kinase CHASE4 PF05228.13 gi|126178918|ref|YP_001046883.1| - 0.027 14.7 0.0 0.35 11.1 0.0 2.1 1 1 0 1 1 1 0 CHASE4 domain DAGK_cat PF00781.24 gi|126178918|ref|YP_001046883.1| - 0.03 13.9 0.3 0.056 13.1 0.3 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain DUF169 PF02596.15 gi|126178919|ref|YP_001046884.1| - 1.5e-62 211.2 0.0 1.7e-62 211.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 ACT PF01842.25 gi|126178920|ref|YP_001046885.1| - 3.1e-05 23.6 1.0 0.0091 15.8 0.1 2.9 2 2 2 4 4 4 2 ACT domain Radical_SAM PF04055.21 gi|126178920|ref|YP_001046885.1| - 0.02 15.3 0.4 1.1 9.7 0.4 2.1 1 1 0 1 1 1 0 Radical SAM superfamily Saccharop_dh_N PF04455.12 gi|126178920|ref|YP_001046885.1| - 0.1 13.0 0.1 0.43 11.0 0.0 1.9 2 0 0 2 2 2 0 LOR/SDH bifunctional enzyme conserved region Homoserine_dh PF00742.19 gi|126178921|ref|YP_001046886.1| - 5.1e-55 186.1 0.1 7.7e-55 185.5 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|126178921|ref|YP_001046886.1| - 9.8e-10 39.1 0.1 2.5e-09 37.8 0.1 1.7 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|126178921|ref|YP_001046886.1| - 0.00019 21.3 0.3 0.00033 20.5 0.1 1.5 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Gp_dh_N PF00044.24 gi|126178921|ref|YP_001046886.1| - 0.0019 18.5 0.2 0.0045 17.3 0.2 1.7 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|126178921|ref|YP_001046886.1| - 0.018 14.9 0.6 0.048 13.5 0.6 1.8 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|126178921|ref|YP_001046886.1| - 0.026 15.1 2.0 0.082 13.5 2.0 2.0 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|126178921|ref|YP_001046886.1| - 0.039 14.2 0.4 0.12 12.7 0.4 1.9 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|126178921|ref|YP_001046886.1| - 0.073 13.9 0.0 0.13 13.1 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ApbA PF02558.16 gi|126178921|ref|YP_001046886.1| - 0.16 11.6 0.3 0.32 10.7 0.4 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrmB PF01978.19 gi|126178922|ref|YP_001046887.1| - 1.1e-06 28.4 0.0 2.5e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|126178922|ref|YP_001046887.1| - 2.3e-05 24.2 0.1 0.00036 20.3 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|126178922|ref|YP_001046887.1| - 7e-05 22.5 0.0 0.0056 16.5 0.0 3.1 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|126178922|ref|YP_001046887.1| - 0.00014 21.9 0.0 0.00041 20.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|126178922|ref|YP_001046887.1| - 0.0013 18.8 0.0 0.0037 17.3 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|126178922|ref|YP_001046887.1| - 0.0033 17.2 0.1 0.017 14.9 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_43 PF09904.9 gi|126178922|ref|YP_001046887.1| - 0.015 15.2 0.0 0.032 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_24 PF13412.6 gi|126178922|ref|YP_001046887.1| - 0.067 12.8 0.0 0.2 11.2 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|126178922|ref|YP_001046887.1| - 0.073 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Terminase_5 PF06056.12 gi|126178922|ref|YP_001046887.1| - 0.076 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) Fe_dep_repress PF01325.19 gi|126178922|ref|YP_001046887.1| - 0.12 12.6 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF2284 PF10050.9 gi|126178923|ref|YP_001046888.1| - 3.8e-45 153.6 0.0 4.4e-45 153.4 0.0 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) Inos-1-P_synth PF01658.17 gi|126178924|ref|YP_001046889.1| - 3e-31 107.9 0.0 4.3e-31 107.4 0.0 1.2 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Fae PF08714.11 gi|126178925|ref|YP_001046890.1| - 1.4e-70 236.4 2.5 1.5e-70 236.2 2.5 1.0 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) PrsW-protease PF13367.6 gi|126178926|ref|YP_001046891.1| - 1.6e-40 138.6 17.8 2.2e-40 138.2 17.8 1.1 1 0 0 1 1 1 1 PrsW family intramembrane metalloprotease Bee_toxin PF17454.2 gi|126178927|ref|YP_001046892.1| - 0.046 13.7 0.2 0.046 13.7 0.2 2.3 2 0 0 2 2 2 0 Honey bee toxin NAD_binding_7 PF13241.6 gi|126178929|ref|YP_001046894.1| - 1.5e-20 73.6 0.0 2.7e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|126178929|ref|YP_001046894.1| - 1.7e-05 24.2 0.0 3.1e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central Seryl_tRNA_N PF02403.22 gi|126178929|ref|YP_001046894.1| - 0.0021 18.3 0.1 0.0037 17.5 0.1 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Sacchrp_dh_NADP PF03435.18 gi|126178929|ref|YP_001046894.1| - 0.0025 18.1 0.0 0.0042 17.3 0.0 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain T3SS_needle_reg PF09025.10 gi|126178929|ref|YP_001046894.1| - 0.054 13.5 0.0 0.085 12.8 0.0 1.3 1 0 0 1 1 1 0 YopR, type III needle-polymerisation regulator Shikimate_DH PF01488.20 gi|126178930|ref|YP_001046895.1| - 2.5e-38 131.2 0.4 4.6e-38 130.4 0.0 1.6 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|126178930|ref|YP_001046895.1| - 3.3e-30 104.8 0.2 9e-30 103.4 0.1 1.8 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|126178930|ref|YP_001046895.1| - 9.4e-18 64.5 2.7 1.9e-17 63.5 2.7 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|126178930|ref|YP_001046895.1| - 0.00013 22.5 0.0 0.00041 20.9 0.0 2.0 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Glu_dehyd_C PF16912.5 gi|126178930|ref|YP_001046895.1| - 0.0013 18.2 1.1 0.0037 16.8 0.2 1.9 2 0 0 2 2 2 1 Glucose dehydrogenase C-terminus ThiF PF00899.21 gi|126178930|ref|YP_001046895.1| - 0.003 17.0 0.4 0.0052 16.2 0.4 1.3 1 0 0 1 1 1 1 ThiF family NAD_binding_2 PF03446.15 gi|126178930|ref|YP_001046895.1| - 0.0034 17.5 0.0 0.0093 16.1 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|126178930|ref|YP_001046895.1| - 0.0038 16.6 0.1 0.0068 15.8 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|126178930|ref|YP_001046895.1| - 0.012 15.8 0.1 0.033 14.4 0.1 1.8 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|126178930|ref|YP_001046895.1| - 0.047 14.1 0.1 0.12 12.9 0.1 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding TfuA PF07812.12 gi|126178930|ref|YP_001046895.1| - 0.049 13.4 0.5 0.11 12.3 0.1 1.8 2 0 0 2 2 2 0 TfuA-like protein DFP PF04127.15 gi|126178930|ref|YP_001046895.1| - 0.12 12.2 0.1 0.23 11.3 0.1 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein 3HCDH_N PF02737.18 gi|126178930|ref|YP_001046895.1| - 0.14 12.0 0.2 0.37 10.6 0.2 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Adhesin_P1_N PF18652.1 gi|126178930|ref|YP_001046895.1| - 0.15 12.1 1.7 0.56 10.3 0.1 2.3 2 0 0 2 2 2 0 Adhesin P1 N-terminal domain ALAD PF00490.21 gi|126178931|ref|YP_001046896.1| - 6.3e-136 452.7 0.1 7.2e-136 452.5 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Ubiq_cyt_C_chap PF03981.12 gi|126178931|ref|YP_001046896.1| - 0.071 13.2 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Ubiquinol-cytochrome C chaperone DUF3918 PF13056.6 gi|126178931|ref|YP_001046896.1| - 5.7 6.6 10.2 2 8.1 4.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3918) Aminotran_3 PF00202.21 gi|126178932|ref|YP_001046897.1| - 3.5e-60 203.8 0.0 4.7e-60 203.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Porphobil_deam PF01379.20 gi|126178933|ref|YP_001046898.1| - 4.1e-67 225.7 0.0 5.5e-67 225.2 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|126178933|ref|YP_001046898.1| - 4.1e-07 30.3 0.1 7.6e-07 29.4 0.1 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain TP_methylase PF00590.20 gi|126178934|ref|YP_001046899.1| - 1.1e-51 175.8 2.3 1.3e-51 175.6 2.3 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|126178934|ref|YP_001046899.1| - 0.006 17.0 0.3 0.035 14.5 0.3 2.2 1 1 0 1 1 1 1 Radical SAM superfamily ILVD_EDD PF00920.21 gi|126178935|ref|YP_001046900.1| - 4.1e-210 698.8 2.5 4.6e-210 698.6 2.5 1.0 1 0 0 1 1 1 1 Dehydratase family Pro_CA PF00484.19 gi|126178936|ref|YP_001046901.1| - 6.4e-50 169.5 0.0 7.3e-50 169.3 0.0 1.0 1 0 0 1 1 1 1 Carbonic anhydrase Abhydrolase_1 PF00561.20 gi|126178936|ref|YP_001046901.1| - 0.17 11.5 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 alpha/beta hydrolase fold FMN_red PF03358.15 gi|126178938|ref|YP_001046903.1| - 8.5e-24 84.0 0.0 1.2e-23 83.6 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|126178938|ref|YP_001046903.1| - 3.7e-06 26.8 0.0 5.3e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Fer4_4 PF12800.7 gi|126178938|ref|YP_001046903.1| - 0.17 12.4 2.2 0.46 11.1 2.2 1.6 1 0 0 1 1 1 0 4Fe-4S binding domain CPSase_sm_chain PF00988.22 gi|126178939|ref|YP_001046904.1| - 4.1e-41 139.8 0.0 6e-41 139.3 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|126178939|ref|YP_001046904.1| - 4.2e-40 137.6 0.0 6e-40 137.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|126178939|ref|YP_001046904.1| - 2.9e-08 33.8 0.1 5.8e-07 29.5 0.1 2.1 1 1 0 1 1 1 1 Peptidase C26 DUF1952 PF09189.10 gi|126178939|ref|YP_001046904.1| - 0.17 11.7 0.0 0.6 10.0 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1952) CPSase_L_D2 PF02786.17 gi|126178940|ref|YP_001046905.1| - 8e-108 358.8 0.3 3.6e-69 232.5 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|126178940|ref|YP_001046905.1| - 8e-34 116.6 0.0 2.3e-33 115.2 0.0 1.8 2 0 0 2 2 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 gi|126178940|ref|YP_001046905.1| - 1e-20 73.7 0.2 3.7e-19 68.7 0.0 3.2 4 0 0 4 4 3 1 MGS-like domain ATP-grasp PF02222.22 gi|126178940|ref|YP_001046905.1| - 4e-19 68.8 0.0 2.6e-08 33.6 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|126178940|ref|YP_001046905.1| - 6.6e-16 58.3 0.0 1.5e-06 28.0 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|126178940|ref|YP_001046905.1| - 1.9e-15 56.9 0.0 3.1e-06 26.9 0.0 2.9 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|126178940|ref|YP_001046905.1| - 3.1e-10 40.3 0.2 0.0006 19.9 0.0 2.9 3 0 0 3 3 2 2 ATP-grasp domain GARS_A PF01071.19 gi|126178940|ref|YP_001046905.1| - 1.8e-06 27.8 0.0 0.02 14.7 0.0 2.5 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|126178940|ref|YP_001046905.1| - 0.0024 17.5 0.0 0.26 10.8 0.0 3.1 3 1 0 3 3 3 1 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.6 gi|126178940|ref|YP_001046905.1| - 0.0067 15.9 0.3 0.5 9.8 0.0 3.8 5 0 0 5 5 5 1 ATP-grasp domain Peptidase_S66 PF02016.15 gi|126178940|ref|YP_001046905.1| - 0.018 15.2 0.0 5.1 7.2 0.0 3.1 2 1 1 3 3 3 0 LD-carboxypeptidase N-terminal domain Glyco_trans_4_2 PF13477.6 gi|126178940|ref|YP_001046905.1| - 0.023 14.7 0.0 2.5 8.1 0.0 2.9 3 0 0 3 3 2 0 Glycosyl transferase 4-like ATP-grasp_2 PF08442.10 gi|126178940|ref|YP_001046905.1| - 0.024 14.2 0.0 6.6 6.2 0.0 2.9 3 1 0 3 3 3 0 ATP-grasp domain NAD_binding_10 PF13460.6 gi|126178940|ref|YP_001046905.1| - 0.068 13.0 0.1 0.61 9.9 0.0 2.6 3 0 0 3 3 3 0 NAD(P)H-binding Epimerase PF01370.21 gi|126178940|ref|YP_001046905.1| - 0.081 12.4 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DUF4176 PF13780.6 gi|126178940|ref|YP_001046905.1| - 0.17 11.9 0.0 15 5.7 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4176) OpuAC PF04069.12 gi|126178942|ref|YP_001046907.1| - 2.1e-70 237.2 0.9 2.4e-70 237.1 0.9 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system SBP_bac_3 PF00497.20 gi|126178942|ref|YP_001046907.1| - 0.063 12.7 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 BPD_transp_1 PF00528.22 gi|126178943|ref|YP_001046908.1| - 1.5e-23 83.5 13.4 1.5e-23 83.5 13.4 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|126178944|ref|YP_001046909.1| - 4.8e-32 111.3 0.0 8.9e-32 110.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter CBS PF00571.28 gi|126178944|ref|YP_001046909.1| - 9.1e-14 51.6 5.2 7.6e-08 32.7 0.5 2.9 3 0 0 3 3 3 2 CBS domain AAA_21 PF13304.6 gi|126178944|ref|YP_001046909.1| - 5.5e-07 29.7 0.0 0.0093 15.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|126178944|ref|YP_001046909.1| - 0.00048 19.8 0.0 0.00086 19.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|126178944|ref|YP_001046909.1| - 0.0008 19.8 0.1 0.0021 18.4 0.0 1.8 2 1 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|126178944|ref|YP_001046909.1| - 0.0028 17.6 0.0 0.0056 16.6 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|126178944|ref|YP_001046909.1| - 0.015 15.6 0.3 1.1 9.5 0.1 2.4 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|126178944|ref|YP_001046909.1| - 0.037 14.5 0.0 0.068 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|126178944|ref|YP_001046909.1| - 0.057 12.2 0.1 1.6 7.4 0.1 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|126178944|ref|YP_001046909.1| - 0.094 12.4 0.1 0.4 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|126178944|ref|YP_001046909.1| - 0.17 12.0 0.0 0.67 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|126178944|ref|YP_001046909.1| - 0.17 12.1 0.4 0.52 10.6 0.4 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Arginosuc_synth PF00764.19 gi|126178945|ref|YP_001046910.1| - 1.1e-163 545.1 0.0 1.3e-163 544.9 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|126178945|ref|YP_001046910.1| - 0.01 15.3 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|126178945|ref|YP_001046910.1| - 0.17 10.9 0.0 0.28 10.3 0.0 1.3 1 0 0 1 1 1 0 NAD synthase Putative_PNPOx PF01243.20 gi|126178946|ref|YP_001046911.1| - 8.2e-17 61.2 0.0 1e-16 60.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|126178946|ref|YP_001046911.1| - 3.7e-05 23.3 0.1 4.3e-05 23.1 0.1 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like DUF2114 PF09887.9 gi|126178947|ref|YP_001046912.1| - 3.2e-229 761.0 0.1 3.6e-229 760.8 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) OTCace PF00185.24 gi|126178949|ref|YP_001046914.1| - 2.9e-56 189.9 0.0 4.9e-56 189.2 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|126178949|ref|YP_001046914.1| - 1.5e-49 167.8 0.0 2.4e-49 167.1 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Gag_p30 PF02093.16 gi|126178949|ref|YP_001046914.1| - 0.16 11.5 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 Gag P30 core shell protein GARS_A PF01071.19 gi|126178950|ref|YP_001046915.1| - 7.3e-57 192.3 0.0 1e-56 191.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|126178950|ref|YP_001046915.1| - 1.4e-24 86.7 0.1 2.5e-24 85.9 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|126178950|ref|YP_001046915.1| - 3.7e-14 52.8 0.8 1.3e-13 51.1 0.0 2.3 3 0 0 3 3 3 1 Phosphoribosylglycinamide synthetase, C domain ATPgrasp_ST PF14397.6 gi|126178950|ref|YP_001046915.1| - 0.0028 17.0 0.0 0.0082 15.4 0.0 1.6 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|126178950|ref|YP_001046915.1| - 0.014 15.4 0.0 0.03 14.4 0.0 1.6 1 1 0 1 1 1 0 ATP-grasp domain RimK PF08443.11 gi|126178950|ref|YP_001046915.1| - 0.078 12.6 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|126178950|ref|YP_001046915.1| - 0.18 11.2 0.0 0.37 10.2 0.0 1.5 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain Pribosyltran PF00156.27 gi|126178951|ref|YP_001046916.1| - 1.1e-14 54.2 2.5 1.4e-14 53.9 2.5 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain CarS-like PF01864.17 gi|126178952|ref|YP_001046917.1| - 2.8e-46 157.7 2.1 3.2e-46 157.5 2.1 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|126178952|ref|YP_001046917.1| - 1.8e-08 34.5 0.9 1.8e-08 34.5 0.9 2.0 2 0 0 2 2 2 1 Cytidylyltransferase family DUF5518 PF17647.1 gi|126178952|ref|YP_001046917.1| - 1.7 8.8 12.3 1.2 9.3 2.7 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5518) Radical_SAM PF04055.21 gi|126178953|ref|YP_001046918.1| - 4.3e-20 72.8 4.4 1.9e-19 70.7 0.0 3.0 2 2 1 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|126178953|ref|YP_001046918.1| - 6.9e-07 29.6 1.0 2.7e-06 27.7 0.0 2.2 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|126178953|ref|YP_001046918.1| - 2.7e-05 24.3 0.1 0.00037 20.6 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.24 gi|126178953|ref|YP_001046918.1| - 0.032 13.6 0.0 0.066 12.6 0.0 1.5 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel MRG PF05712.13 gi|126178953|ref|YP_001046918.1| - 0.092 12.0 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 MRG OCD_Mu_crystall PF02423.15 gi|126178954|ref|YP_001046919.1| - 1.2e-95 320.1 0.4 1.6e-95 319.7 0.4 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|126178954|ref|YP_001046919.1| - 2.6e-06 27.5 0.0 5.4e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|126178954|ref|YP_001046919.1| - 0.00011 22.7 0.0 0.00022 21.7 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|126178954|ref|YP_001046919.1| - 0.02 15.2 0.1 0.04 14.2 0.0 1.6 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|126178954|ref|YP_001046919.1| - 0.046 13.1 0.0 0.072 12.4 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Robl_LC7 PF03259.17 gi|126178955|ref|YP_001046920.1| - 2.9e-07 30.2 0.1 5.4e-07 29.3 0.1 1.4 1 0 0 1 1 1 1 Roadblock/LC7 domain DUF4388 PF14332.6 gi|126178955|ref|YP_001046920.1| - 0.13 12.5 0.0 0.2 11.9 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4388) Robl_LC7 PF03259.17 gi|126178956|ref|YP_001046921.1| - 2.2e-16 59.4 0.6 2.9e-16 59.0 0.6 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.10 gi|126178956|ref|YP_001046921.1| - 1.7e-05 24.6 0.0 2e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting NiFeSe_Hases PF00374.19 gi|126178957|ref|YP_001046922.1| - 1.6e-38 132.9 0.0 7.3e-19 68.0 0.0 3.1 3 0 0 3 3 3 3 Nickel-dependent hydrogenase Oxidored_q6 PF01058.22 gi|126178958|ref|YP_001046923.1| - 1.7e-27 95.9 0.2 5.9e-27 94.1 0.1 1.9 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit ATC_hydrolase PF14196.6 gi|126178959|ref|YP_001046924.1| - 0.00023 21.9 0.0 0.00028 21.7 0.0 1.1 1 0 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase V4R PF02830.18 gi|126178959|ref|YP_001046924.1| - 0.064 13.3 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 V4R domain Fer4_10 PF13237.6 gi|126178960|ref|YP_001046925.1| - 2.2e-11 43.7 22.1 7.1e-09 35.7 11.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|126178960|ref|YP_001046925.1| - 2.3e-11 43.0 16.7 9.1e-07 28.5 3.7 2.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|126178960|ref|YP_001046925.1| - 3.9e-11 42.5 16.0 1.1e-06 28.5 3.4 2.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126178960|ref|YP_001046925.1| - 2.3e-09 37.7 23.7 3.5e-08 33.9 11.3 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126178960|ref|YP_001046925.1| - 6.3e-09 35.4 12.8 8.2e-06 25.6 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126178960|ref|YP_001046925.1| - 2e-08 34.2 10.0 3.9e-08 33.3 10.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126178960|ref|YP_001046925.1| - 3.7e-08 33.4 13.7 2.6e-07 30.7 13.7 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126178960|ref|YP_001046925.1| - 1.5e-06 28.3 13.7 0.0013 19.1 1.5 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|126178960|ref|YP_001046925.1| - 1.7e-06 28.5 7.7 0.001 19.6 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126178960|ref|YP_001046925.1| - 1.9e-06 28.7 8.2 0.0057 17.6 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|126178960|ref|YP_001046925.1| - 5e-05 23.8 12.5 0.00046 20.7 1.7 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|126178960|ref|YP_001046925.1| - 5.6e-05 23.9 7.4 0.0088 16.9 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|126178960|ref|YP_001046925.1| - 0.00013 22.7 11.3 0.00028 21.6 2.3 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|126178960|ref|YP_001046925.1| - 0.00019 21.8 13.7 0.0049 17.3 2.0 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|126178960|ref|YP_001046925.1| - 0.026 14.7 11.9 1.4 9.1 12.0 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|126178960|ref|YP_001046925.1| - 0.45 10.7 6.6 1.1 9.4 6.6 1.7 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S CbiA PF01656.23 gi|126178961|ref|YP_001046926.1| - 2.7e-21 76.0 0.1 3.5e-21 75.6 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|126178961|ref|YP_001046926.1| - 1e-18 67.7 2.4 1.1e-17 64.3 2.4 2.3 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|126178961|ref|YP_001046926.1| - 7.2e-17 61.9 0.1 1e-16 61.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|126178961|ref|YP_001046926.1| - 1.4e-10 41.1 0.5 1.1e-09 38.2 0.5 1.9 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|126178961|ref|YP_001046926.1| - 4.5e-08 32.9 0.0 6.9e-08 32.3 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|126178961|ref|YP_001046926.1| - 6.5e-06 25.5 3.3 7e-05 22.2 0.7 2.7 3 0 0 3 3 3 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|126178961|ref|YP_001046926.1| - 3.3e-05 23.8 0.2 3.3e-05 23.8 0.2 2.0 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|126178961|ref|YP_001046926.1| - 3.6e-05 23.2 0.8 0.17 11.1 0.1 2.1 2 0 0 2 2 2 2 ATPase MipZ CLP1_P PF16575.5 gi|126178961|ref|YP_001046926.1| - 0.00017 21.4 0.1 0.00051 19.9 0.1 1.7 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop VirC1 PF07015.11 gi|126178961|ref|YP_001046926.1| - 0.01 15.2 1.3 0.01 15.2 0.3 1.5 2 0 0 2 2 2 0 VirC1 protein AAA_24 PF13479.6 gi|126178961|ref|YP_001046926.1| - 0.027 14.2 0.1 0.044 13.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|126178961|ref|YP_001046926.1| - 0.054 13.1 1.3 0.12 12.0 1.3 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|126178961|ref|YP_001046926.1| - 0.056 13.3 0.2 0.09 12.7 0.2 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_30 PF13604.6 gi|126178961|ref|YP_001046926.1| - 0.15 11.8 0.2 0.23 11.1 0.2 1.3 1 0 0 1 1 1 0 AAA domain HycI PF01750.18 gi|126178964|ref|YP_001046929.1| - 2.6e-14 53.2 0.1 3.1e-14 52.9 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease RimK PF08443.11 gi|126178965|ref|YP_001046930.1| - 5.4e-22 78.3 0.0 1.4e-21 77.0 0.0 1.6 1 1 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|126178965|ref|YP_001046930.1| - 3.3e-10 39.6 0.0 1.7e-08 34.0 0.0 2.2 1 1 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|126178965|ref|YP_001046930.1| - 3.3e-08 33.7 0.0 4.7e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|126178965|ref|YP_001046930.1| - 1.1e-06 28.1 0.1 3.9e-05 23.0 0.0 2.6 1 1 2 3 3 3 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 gi|126178965|ref|YP_001046930.1| - 1.4e-06 27.8 0.2 0.0085 15.4 0.0 3.0 2 1 1 3 3 3 2 Sugar-transfer associated ATP-grasp R2K_3 PF14243.6 gi|126178965|ref|YP_001046930.1| - 2.4e-05 24.4 0.4 0.00024 21.2 0.1 2.2 2 1 1 3 3 3 1 ATP-grasp domain, R2K clade family 3 ATP-grasp PF02222.22 gi|126178965|ref|YP_001046930.1| - 0.15 11.7 0.0 0.23 11.0 0.0 1.4 1 1 0 1 1 1 0 ATP-grasp domain UPF0058 PF01893.16 gi|126178966|ref|YP_001046931.1| - 9e-32 109.2 2.3 1e-31 109.0 2.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Toprim_4 PF13662.6 gi|126178967|ref|YP_001046932.1| - 8.3e-12 45.4 0.3 2.8e-11 43.7 0.1 2.0 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|126178967|ref|YP_001046932.1| - 0.0001 22.7 0.0 0.00019 21.8 0.0 1.5 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|126178967|ref|YP_001046932.1| - 0.003 17.8 0.2 0.032 14.5 0.2 2.5 1 1 0 1 1 1 1 Toprim domain DUF167 PF02594.16 gi|126178968|ref|YP_001046933.1| - 3.5e-24 84.7 0.0 4.5e-24 84.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Tautomerase PF01361.21 gi|126178968|ref|YP_001046933.1| - 0.0054 16.6 0.0 0.0095 15.8 0.0 1.5 1 0 0 1 1 1 1 Tautomerase enzyme Amidohydro_1 PF01979.20 gi|126178969|ref|YP_001046934.1| - 4.7e-13 49.2 0.0 3.7e-12 46.2 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|126178969|ref|YP_001046934.1| - 1.9e-10 40.8 5.1 2.9e-05 23.7 0.1 2.5 2 1 0 3 3 3 2 Amidohydrolase family DUF2156 PF09924.9 gi|126178970|ref|YP_001046935.1| - 1.8e-51 175.0 0.0 2e-51 174.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2156) Acetyltransf_10 PF13673.7 gi|126178971|ref|YP_001046936.1| - 2e-12 47.1 0.0 2.5e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|126178971|ref|YP_001046936.1| - 2e-12 47.3 0.0 2.4e-12 47.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|126178971|ref|YP_001046936.1| - 1.9e-09 37.8 0.0 2.9e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|126178971|ref|YP_001046936.1| - 0.00016 21.8 0.0 0.00024 21.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|126178971|ref|YP_001046936.1| - 0.00023 21.1 0.0 0.00036 20.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|126178971|ref|YP_001046936.1| - 0.0075 16.9 0.1 0.0092 16.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|126178971|ref|YP_001046936.1| - 0.029 14.5 0.0 0.044 13.9 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase AIRS_C PF02769.22 gi|126178972|ref|YP_001046937.1| - 5e-33 114.4 2.7 8.3e-33 113.7 2.7 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|126178972|ref|YP_001046937.1| - 1.3e-16 61.0 2.3 1.3e-16 61.0 2.3 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain HypA PF01155.19 gi|126178973|ref|YP_001046938.1| - 7.7e-25 87.1 0.3 8.7e-25 86.9 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HupF_HypC PF01455.18 gi|126178974|ref|YP_001046939.1| - 6.1e-22 77.5 0.3 7e-22 77.3 0.3 1.1 1 0 0 1 1 1 1 HupF/HypC family FXa_inhibition PF14670.6 gi|126178975|ref|YP_001046940.1| - 7.2 7.0 8.8 31 5.0 0.3 3.3 3 0 0 3 3 3 0 Coagulation Factor Xa inhibitory site DUF2476 PF10630.9 gi|126178975|ref|YP_001046940.1| - 8.3 6.5 19.9 45 4.1 7.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2476) Methyltransf_11 PF08241.12 gi|126178976|ref|YP_001046941.1| - 2.3e-21 76.3 0.0 4.1e-21 75.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126178976|ref|YP_001046941.1| - 1.2e-20 74.0 0.0 1.9e-20 73.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|126178976|ref|YP_001046941.1| - 1.4e-15 57.5 0.0 1.8e-15 57.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126178976|ref|YP_001046941.1| - 1.3e-11 44.5 0.0 1.7e-11 44.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126178976|ref|YP_001046941.1| - 1.4e-11 45.0 0.0 2e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|126178976|ref|YP_001046941.1| - 6.2e-07 29.2 0.0 9.1e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Ubie_methyltran PF01209.18 gi|126178976|ref|YP_001046941.1| - 6.9e-06 25.6 0.0 9.6e-06 25.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|126178976|ref|YP_001046941.1| - 0.00013 21.6 0.0 0.00023 20.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain TPMT PF05724.11 gi|126178976|ref|YP_001046941.1| - 0.00028 20.6 0.0 0.00055 19.7 0.0 1.5 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) CMAS PF02353.20 gi|126178976|ref|YP_001046941.1| - 0.00047 19.5 0.0 0.00062 19.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.6 gi|126178976|ref|YP_001046941.1| - 0.012 16.6 0.0 0.019 16.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|126178976|ref|YP_001046941.1| - 0.015 14.9 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Cons_hypoth95 PF03602.15 gi|126178976|ref|YP_001046941.1| - 0.036 13.7 0.0 0.056 13.1 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_8 PF05148.15 gi|126178976|ref|YP_001046941.1| - 0.16 11.8 0.0 0.41 10.4 0.0 1.6 1 1 0 1 1 1 0 Hypothetical methyltransferase tRNA_U5-meth_tr PF05958.11 gi|126178976|ref|YP_001046941.1| - 0.17 10.9 0.0 0.23 10.4 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_4 PF02390.17 gi|126178976|ref|YP_001046941.1| - 0.17 11.4 0.0 0.65 9.4 0.0 1.8 2 0 0 2 2 2 0 Putative methyltransferase Pox_MCEL PF03291.16 gi|126178976|ref|YP_001046941.1| - 0.22 10.6 0.0 0.32 10.0 0.0 1.2 1 0 0 1 1 1 0 mRNA capping enzyme SelR PF01641.18 gi|126178977|ref|YP_001046942.1| - 1.9e-54 182.9 0.1 2.7e-54 182.4 0.1 1.2 1 0 0 1 1 1 1 SelR domain Zn_ribbon_SprT PF17283.2 gi|126178977|ref|YP_001046942.1| - 0.0093 15.9 2.4 0.036 14.0 2.4 2.0 1 1 0 1 1 1 1 SprT-like zinc ribbon domain Yippee-Mis18 PF03226.14 gi|126178977|ref|YP_001046942.1| - 0.022 14.9 0.8 0.046 13.9 0.1 1.9 2 1 0 2 2 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Jas PF16135.5 gi|126178977|ref|YP_001046942.1| - 0.54 10.5 3.8 0.31 11.3 1.0 2.0 2 1 0 2 2 2 0 TPL-binding domain in jasmonate signalling Ribosomal_L37e PF01907.19 gi|126178977|ref|YP_001046942.1| - 0.56 10.4 5.1 12 6.2 0.2 2.3 2 0 0 2 2 2 0 Ribosomal protein L37e CARDB PF07705.11 gi|126178978|ref|YP_001046943.1| - 0.0059 16.9 0.0 0.0075 16.5 0.0 1.2 1 0 0 1 1 1 1 CARDB DUF4352 PF11611.8 gi|126178978|ref|YP_001046943.1| - 0.045 14.0 0.0 0.061 13.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4352) LCE6A PF15858.5 gi|126178978|ref|YP_001046943.1| - 0.087 13.6 0.6 0.35 11.6 0.0 2.0 1 1 1 2 2 2 0 Late cornified envelope protein 6A family DUF1489 PF07370.11 gi|126178978|ref|YP_001046943.1| - 0.13 12.0 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1489) FMN_red PF03358.15 gi|126178979|ref|YP_001046944.1| - 3.8e-34 117.7 0.0 5.2e-34 117.2 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|126178979|ref|YP_001046944.1| - 9.3e-13 48.3 0.0 1.3e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold HEAT_2 PF13646.6 gi|126178980|ref|YP_001046945.1| - 5.5e-105 344.0 84.3 5.4e-14 52.3 1.2 13.6 3 3 7 13 13 13 13 HEAT repeats HEAT PF02985.22 gi|126178980|ref|YP_001046945.1| - 1.6e-60 195.8 34.7 0.0078 16.4 0.0 23.2 23 0 0 23 23 23 17 HEAT repeat HEAT_PBS PF03130.16 gi|126178980|ref|YP_001046945.1| - 1.2e-57 186.7 113.6 4.2e-05 23.8 1.2 24.1 24 1 0 24 24 24 15 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|126178980|ref|YP_001046945.1| - 3.2e-31 107.3 73.4 0.065 13.8 0.1 21.1 19 3 2 22 22 22 14 HEAT-like repeat Arm PF00514.23 gi|126178980|ref|YP_001046945.1| - 1.9e-28 97.6 31.5 0.3 11.2 0.0 20.1 16 6 8 24 24 24 7 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|126178980|ref|YP_001046945.1| - 2.2e-16 60.3 8.5 0.38 10.8 0.0 13.0 9 5 3 14 14 14 2 non-SMC mitotic condensation complex subunit 1 Vac14_Fab1_bd PF12755.7 gi|126178980|ref|YP_001046945.1| - 8.7e-07 29.5 0.0 0.21 12.2 0.0 7.2 6 3 1 7 7 7 1 Vacuolar 14 Fab1-binding region Adaptin_N PF01602.20 gi|126178980|ref|YP_001046945.1| - 1.8e-05 23.5 0.0 0.42 9.1 0.0 5.8 6 2 1 7 7 7 1 Adaptin N terminal region RTP1_C1 PF10363.9 gi|126178980|ref|YP_001046945.1| - 2.7e-05 24.3 0.4 5.8 7.1 0.0 5.7 5 0 0 5 5 5 1 Required for nuclear transport of RNA pol II C-terminus 1 Vitellogenin_N PF01347.22 gi|126178980|ref|YP_001046945.1| - 0.0011 17.4 0.1 5.7 5.2 0.0 3.9 3 1 1 4 4 4 1 Lipoprotein amino terminal region IFRD PF05004.13 gi|126178980|ref|YP_001046945.1| - 0.0013 17.9 9.5 21 4.1 0.0 7.7 5 2 2 8 8 8 0 Interferon-related developmental regulator (IFRD) RasGEF_N_2 PF14663.6 gi|126178980|ref|YP_001046945.1| - 0.0014 19.0 1.9 1.4e+02 2.9 0.0 8.4 11 2 1 12 12 12 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain Cnd3 PF12719.7 gi|126178980|ref|YP_001046945.1| - 0.0071 15.6 0.0 0.13 11.4 0.0 3.1 4 1 0 4 4 4 1 Nuclear condensing complex subunits, C-term domain NopRA1 PF16201.5 gi|126178980|ref|YP_001046945.1| - 0.013 15.0 0.4 21 4.6 0.0 4.5 5 0 0 5 5 5 0 Nucleolar pre-ribosomal-associated protein 1 DUF2573 PF10835.8 gi|126178980|ref|YP_001046945.1| - 0.078 13.3 0.0 46 4.4 0.0 3.9 3 1 1 4 4 4 0 Protein of unknown function (DUF2573) DUF2019 PF09450.10 gi|126178980|ref|YP_001046945.1| - 1.6 8.7 9.9 6.4 6.8 0.0 5.6 6 1 1 7 7 7 0 Domain of unknown function (DUF2019) DUF4921 PF16268.5 gi|126178981|ref|YP_001046946.1| - 0.036 12.9 0.0 0.057 12.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4921) Glycos_transf_1 PF00534.20 gi|126178982|ref|YP_001046947.1| - 2.7e-29 101.9 0.0 4.7e-29 101.1 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126178982|ref|YP_001046947.1| - 1.3e-26 93.6 0.0 3e-26 92.5 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126178982|ref|YP_001046947.1| - 8.8e-22 77.9 0.0 1.5e-21 77.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.11 gi|126178982|ref|YP_001046947.1| - 3.7e-13 49.7 0.0 7.9e-07 29.0 0.0 2.3 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 gi|126178982|ref|YP_001046947.1| - 2.9e-12 47.3 0.0 3.4e-11 43.8 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|126178982|ref|YP_001046947.1| - 4.7e-10 39.7 0.0 1.4e-09 38.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Mut7-C PF01927.16 gi|126178983|ref|YP_001046948.1| - 7e-32 110.5 0.0 7.9e-32 110.4 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain PIN_10 PF18478.1 gi|126178983|ref|YP_001046948.1| - 0.0049 17.0 0.0 0.009 16.2 0.0 1.4 1 0 0 1 1 1 1 PIN like domain zf-RING_7 PF02591.15 gi|126178983|ref|YP_001046948.1| - 0.0061 16.7 0.4 0.014 15.5 0.4 1.7 1 1 0 1 1 1 1 C4-type zinc ribbon domain DUF5615 PF18480.1 gi|126178983|ref|YP_001046948.1| - 0.019 14.7 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) Radical_SAM PF04055.21 gi|126178984|ref|YP_001046949.1| - 3e-19 70.0 0.0 1.2e-18 68.1 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily DZR PF12773.7 gi|126178984|ref|YP_001046949.1| - 0.0097 15.9 0.2 0.0097 15.9 0.2 3.0 4 0 0 4 4 3 1 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|126178984|ref|YP_001046949.1| - 0.032 14.3 0.3 0.032 14.3 0.3 2.8 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Rpr2 PF04032.16 gi|126178984|ref|YP_001046949.1| - 0.13 12.6 0.6 1.9 8.8 0.2 2.6 2 0 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-ribbon_3 PF13248.6 gi|126178984|ref|YP_001046949.1| - 0.22 11.0 0.2 0.22 11.0 0.2 4.2 4 0 0 4 4 4 0 zinc-ribbon domain Fer4_12 PF13353.6 gi|126178984|ref|YP_001046949.1| - 0.25 11.6 2.5 0.21 11.8 0.2 2.1 2 1 0 2 2 2 0 4Fe-4S single cluster domain zf-C4_Topoisom PF01396.19 gi|126178984|ref|YP_001046949.1| - 0.26 11.1 5.5 0.6 9.9 0.0 3.1 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-TFIIB PF13453.6 gi|126178984|ref|YP_001046949.1| - 0.72 9.2 6.3 0.16 11.3 2.1 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.10 gi|126178984|ref|YP_001046949.1| - 0.77 9.9 9.4 2.1 8.5 0.1 4.0 4 0 0 4 4 4 0 Zinc ribbon domain YhfH PF14149.6 gi|126178984|ref|YP_001046949.1| - 0.85 9.7 6.6 1.3 9.0 0.1 3.2 3 0 0 3 3 3 0 YhfH-like protein DUF1272 PF06906.11 gi|126178984|ref|YP_001046949.1| - 0.87 9.7 6.0 9.3 6.4 0.0 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF1272) zinc_ribbon_2 PF13240.6 gi|126178984|ref|YP_001046949.1| - 1.9 8.3 10.4 0.75 9.6 0.1 3.8 4 0 0 4 4 4 0 zinc-ribbon domain GFA PF04828.14 gi|126178984|ref|YP_001046949.1| - 6.7 7.1 12.1 8.4 6.8 0.0 4.4 4 1 1 5 5 5 0 Glutathione-dependent formaldehyde-activating enzyme Lar_restr_allev PF14354.6 gi|126178985|ref|YP_001046950.1| - 0.00025 21.3 2.2 0.00028 21.2 2.2 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|126178985|ref|YP_001046950.1| - 0.00061 19.7 4.5 0.0011 18.9 4.5 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|126178985|ref|YP_001046950.1| - 0.011 15.8 2.4 1.3 9.2 0.5 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|126178985|ref|YP_001046950.1| - 0.016 14.9 6.3 0.15 11.8 0.7 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain TF_Zn_Ribbon PF08271.12 gi|126178985|ref|YP_001046950.1| - 0.032 13.7 3.7 2.2 7.9 0.3 2.3 2 1 0 2 2 2 0 TFIIB zinc-binding TFIIS_C PF01096.18 gi|126178985|ref|YP_001046950.1| - 0.036 13.9 2.8 3.6 7.5 0.6 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) HypA PF01155.19 gi|126178985|ref|YP_001046950.1| - 0.11 12.5 1.8 2.7 8.0 0.1 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1 PF03811.13 gi|126178985|ref|YP_001046950.1| - 0.26 11.0 7.0 1.2 9.0 7.0 1.9 1 1 0 1 1 1 0 InsA N-terminal domain zf-RRN7 PF11781.8 gi|126178985|ref|YP_001046950.1| - 0.3 10.8 8.5 15 5.3 7.6 2.4 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 AA_kinase PF00696.28 gi|126178986|ref|YP_001046951.1| - 2e-23 83.3 4.9 5.3e-23 81.9 4.9 1.6 1 1 0 1 1 1 1 Amino acid kinase family HhH-GPD PF00730.25 gi|126178987|ref|YP_001046952.1| - 2.1e-24 86.0 0.0 3e-24 85.5 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|126178987|ref|YP_001046952.1| - 2e-10 40.0 0.0 3.6e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|126178987|ref|YP_001046952.1| - 3.2e-06 27.3 0.3 6.2e-06 26.4 0.3 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|126178987|ref|YP_001046952.1| - 0.0014 19.2 0.0 0.2 12.3 0.0 2.5 2 1 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|126178987|ref|YP_001046952.1| - 0.057 13.5 0.0 4.3 7.5 0.0 2.7 2 1 0 2 2 2 0 Helix-hairpin-helix motif PRODH PF18327.1 gi|126178987|ref|YP_001046952.1| - 0.078 13.2 0.2 0.17 12.1 0.2 1.5 1 0 0 1 1 1 0 Proline utilization A proline dehydrogenase N-terminal domain DAHP_snth_FXD PF18152.1 gi|126178987|ref|YP_001046952.1| - 0.12 12.2 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 DAHP synthase ferredoxin-like domain PHO4 PF01384.20 gi|126178988|ref|YP_001046953.1| - 1.9e-86 290.2 53.0 1.3e-53 182.2 26.6 2.7 1 1 1 2 2 2 2 Phosphate transporter family RsbRD_N PF14361.6 gi|126178988|ref|YP_001046953.1| - 0.24 12.1 0.0 0.49 11.1 0.0 1.5 1 0 0 1 1 1 0 RsbT co-antagonist protein rsbRD N-terminal domain PhoU_div PF01865.16 gi|126178989|ref|YP_001046954.1| - 3.4e-24 85.4 8.8 4.2e-24 85.1 8.8 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|126178989|ref|YP_001046954.1| - 0.0017 18.8 6.9 0.02 15.3 0.4 2.5 1 1 1 2 2 2 2 PhoU domain CsgA PF17334.2 gi|126178989|ref|YP_001046954.1| - 0.042 14.6 2.3 1.3 9.8 0.3 2.3 2 0 0 2 2 2 0 Minor curli fiber component A DUF1894 PF08979.11 gi|126178990|ref|YP_001046955.1| - 3.2e-25 88.3 0.1 3.7e-25 88.1 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) Aminotran_5 PF00266.19 gi|126178991|ref|YP_001046956.1| - 1.3e-117 392.9 0.0 2.1e-117 392.2 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class-V PAPS_reduct PF01507.19 gi|126178991|ref|YP_001046956.1| - 4.7e-33 114.7 0.0 7.5e-33 114.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Aminotran_1_2 PF00155.21 gi|126178991|ref|YP_001046956.1| - 1.3e-06 27.9 0.0 7.5e-06 25.3 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|126178991|ref|YP_001046956.1| - 1e-05 25.1 0.1 1.5e-05 24.4 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|126178991|ref|YP_001046956.1| - 0.0015 17.9 0.0 0.0023 17.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Asn_synthase PF00733.21 gi|126178991|ref|YP_001046956.1| - 0.18 11.4 0.0 0.3 10.7 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase FdhD-NarQ PF02634.15 gi|126178992|ref|YP_001046957.1| - 3.2e-54 184.1 0.1 3.9e-54 183.8 0.1 1.1 1 0 0 1 1 1 1 FdhD/NarQ family YjhX_toxin PF09857.9 gi|126178992|ref|YP_001046957.1| - 0.14 12.1 0.1 0.81 9.7 0.0 2.0 2 0 0 2 2 2 0 Putative toxin of bacterial toxin-antitoxin pair Glyoxalase_2 PF12681.7 gi|126178993|ref|YP_001046958.1| - 6.3e-49 164.8 0.0 7.7e-49 164.5 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|126178993|ref|YP_001046958.1| - 5.6e-06 26.6 0.2 3.7e-05 23.9 0.2 2.0 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Sigma70_r4 PF04545.16 gi|126178993|ref|YP_001046958.1| - 0.064 12.8 0.1 0.14 11.7 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 FrhB_FdhB_C PF04432.13 gi|126178994|ref|YP_001046959.1| - 7e-38 129.9 0.1 7e-38 129.9 0.1 1.7 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|126178994|ref|YP_001046959.1| - 1.2e-21 76.6 0.1 2.5e-21 75.6 0.1 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_17 PF13534.6 gi|126178994|ref|YP_001046959.1| - 3.3e-06 27.5 19.3 1.6e-05 25.4 16.4 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126178994|ref|YP_001046959.1| - 7.2e-06 26.0 15.0 0.0015 18.6 0.1 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|126178994|ref|YP_001046959.1| - 0.00013 21.7 8.4 0.069 12.9 3.2 2.4 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.27 gi|126178994|ref|YP_001046959.1| - 0.00013 21.6 15.6 0.0016 18.2 3.9 3.2 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|126178994|ref|YP_001046959.1| - 0.00026 20.9 19.3 0.009 16.1 2.9 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|126178994|ref|YP_001046959.1| - 0.00076 19.9 21.8 0.0043 17.5 2.5 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126178994|ref|YP_001046959.1| - 0.0014 19.1 22.4 0.012 16.2 19.6 3.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126178994|ref|YP_001046959.1| - 0.0015 18.6 27.5 0.0017 18.4 2.7 3.5 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126178994|ref|YP_001046959.1| - 0.0016 18.6 21.3 0.04 14.1 19.1 3.4 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126178994|ref|YP_001046959.1| - 0.0035 17.4 13.8 0.047 13.8 0.5 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126178994|ref|YP_001046959.1| - 0.013 15.9 3.1 0.013 15.9 3.1 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|126178994|ref|YP_001046959.1| - 0.12 12.5 10.5 2 8.7 0.7 3.2 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|126178994|ref|YP_001046959.1| - 1.1 10.1 22.4 0.39 11.6 0.6 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Cript PF10235.9 gi|126178994|ref|YP_001046959.1| - 3.1 8.4 12.2 4.1 8.0 3.3 3.0 3 0 0 3 3 3 0 Microtubule-associated protein CRIPT Fer4_16 PF13484.6 gi|126178994|ref|YP_001046959.1| - 4.9 8.2 21.8 0.29 12.1 0.5 3.5 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Molybdopterin PF00384.22 gi|126178995|ref|YP_001046960.1| - 1.5e-94 317.5 0.0 1.9e-94 317.1 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|126178995|ref|YP_001046960.1| - 2.1e-30 105.0 0.1 4.1e-30 104.1 0.1 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|126178995|ref|YP_001046960.1| - 5.3e-20 71.2 0.8 9.8e-20 70.3 0.8 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain FmdE PF02663.14 gi|126178996|ref|YP_001046961.1| - 2.1e-22 79.6 0.0 2.7e-22 79.2 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|126178996|ref|YP_001046961.1| - 0.29 11.1 3.2 0.55 10.2 0.0 3.0 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger TrmO PF01980.16 gi|126178997|ref|YP_001046962.1| - 3.7e-27 94.9 0.0 5.1e-27 94.5 0.0 1.2 1 0 0 1 1 1 1 tRNA-methyltransferase O FmdE PF02663.14 gi|126178997|ref|YP_001046962.1| - 6.9e-10 39.1 0.0 1e-09 38.5 0.0 1.3 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon MoeA_N PF03453.17 gi|126178998|ref|YP_001046963.1| - 4.4e-38 130.5 0.1 9.7e-38 129.4 0.1 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|126178998|ref|YP_001046963.1| - 3.4e-22 78.7 0.1 5.8e-22 77.9 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.7 gi|126178998|ref|YP_001046963.1| - 6.8e-15 54.7 0.0 1.7e-07 30.5 0.0 3.1 2 1 1 3 3 3 2 PBP superfamily domain MoeA_C PF03454.15 gi|126178998|ref|YP_001046963.1| - 1.8e-12 47.3 2.3 2.4e-12 46.9 0.1 2.5 4 0 0 4 4 4 1 MoeA C-terminal region (domain IV) SnoaL_3 PF13474.6 gi|126178999|ref|YP_001046964.1| - 8.2e-22 77.7 0.0 9.2e-22 77.6 0.0 1.0 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|126178999|ref|YP_001046964.1| - 3.3e-14 53.2 0.2 3.7e-14 53.0 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_2 PF12680.7 gi|126178999|ref|YP_001046964.1| - 9.8e-09 35.8 1.0 1.3e-08 35.4 1.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain CaMKII_AD PF08332.10 gi|126178999|ref|YP_001046964.1| - 0.0033 17.5 0.0 0.0041 17.2 0.0 1.1 1 0 0 1 1 1 1 Calcium/calmodulin dependent protein kinase II association domain HTH_12 PF08461.10 gi|126178999|ref|YP_001046964.1| - 0.025 14.5 0.0 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain SnoaL PF07366.12 gi|126178999|ref|YP_001046964.1| - 0.082 12.7 0.1 0.1 12.4 0.1 1.3 1 1 0 1 1 1 0 SnoaL-like polyketide cyclase DUF3755 PF12579.8 gi|126178999|ref|YP_001046964.1| - 0.097 12.3 0.3 0.097 12.3 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3755) META PF03724.16 gi|126179000|ref|YP_001046965.1| - 1.2e-49 166.8 0.0 5.5e-24 84.2 0.0 2.0 2 0 0 2 2 2 2 META domain DUF5640 PF18692.1 gi|126179000|ref|YP_001046965.1| - 0.005 16.8 0.0 0.75 9.9 0.0 3.3 3 1 0 3 3 3 1 Family of unknown function (DUF5640) META PF03724.16 gi|126179001|ref|YP_001046966.1| - 6.2e-107 351.2 0.0 2.4e-26 91.8 0.0 4.1 4 0 0 4 4 4 4 META domain DUF5640 PF18692.1 gi|126179001|ref|YP_001046966.1| - 6.2e-06 26.2 1.4 2.3 8.3 0.0 5.7 8 0 0 8 8 8 1 Family of unknown function (DUF5640) Inh PF02974.14 gi|126179001|ref|YP_001046966.1| - 0.00026 21.0 0.0 4.2 7.5 0.0 4.5 4 0 0 4 4 4 1 Protease inhibitor Inh RTC PF01137.21 gi|126179001|ref|YP_001046966.1| - 0.019 14.2 0.0 5.5 6.1 0.0 3.1 3 0 0 3 3 3 0 RNA 3'-terminal phosphate cyclase DUF2318 PF10080.9 gi|126179001|ref|YP_001046966.1| - 0.032 14.4 0.1 23 5.2 0.0 3.9 4 0 0 4 4 4 0 Predicted membrane protein (DUF2318) TruB_C PF09142.11 gi|126179001|ref|YP_001046966.1| - 0.053 13.3 0.4 6.8 6.6 0.1 3.1 2 0 0 2 2 2 0 tRNA Pseudouridine synthase II, C terminal FlaE PF07559.14 gi|126179001|ref|YP_001046966.1| - 0.19 12.3 2.3 4.2 8.0 1.0 3.1 2 1 0 2 2 2 0 Flagellar basal body protein FlaE m_DGTX_Dc1a_b_c PF17491.2 gi|126179001|ref|YP_001046966.1| - 1.9 9.2 13.9 21 5.9 0.2 4.2 4 0 0 4 4 4 0 Spider Toxins mu-diguetoxin-1 a, b and c His_Phos_1 PF00300.22 gi|126179002|ref|YP_001046967.1| - 1.9e-37 128.8 0.1 3.5e-28 98.6 0.1 2.0 1 1 1 2 2 2 2 Histidine phosphatase superfamily (branch 1) RHH_1 PF01402.21 gi|126179003|ref|YP_001046968.1| - 0.064 13.2 0.7 0.064 13.2 0.7 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Glyco_hydro_77 PF02446.17 gi|126179004|ref|YP_001046969.1| - 1e-160 535.7 0.0 1.2e-160 535.4 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase DUF2795 PF11387.8 gi|126179005|ref|YP_001046970.1| - 1e-16 60.9 0.7 1.4e-16 60.4 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2795) DUF5343 PF17278.2 gi|126179006|ref|YP_001046971.1| - 0.051 13.7 0.0 0.092 12.8 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5343) DUF4349 PF14257.6 gi|126179007|ref|YP_001046972.1| - 0.48 9.8 2.4 0.87 9.0 2.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) Zn-ribbon_8 PF09723.10 gi|126179008|ref|YP_001046973.1| - 3.1 8.0 5.6 18 5.5 1.4 2.2 1 1 0 2 2 2 0 Zinc ribbon domain UPF0020 PF01170.18 gi|126179009|ref|YP_001046974.1| - 4.9e-26 91.6 0.0 9e-25 87.5 0.0 2.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 AviRa PF11599.8 gi|126179009|ref|YP_001046974.1| - 7.2e-08 32.2 0.0 0.00019 21.0 0.0 2.1 1 1 1 2 2 2 2 RRNA methyltransferase AviRa Methyltransf_25 PF13649.6 gi|126179009|ref|YP_001046974.1| - 2.6e-07 31.2 0.0 5.8e-07 30.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126179009|ref|YP_001046974.1| - 3e-06 27.8 0.0 8.1e-06 26.4 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126179009|ref|YP_001046974.1| - 7.7e-06 25.8 0.0 1.2e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|126179009|ref|YP_001046974.1| - 2.2e-05 24.3 0.0 0.00015 21.6 0.0 2.0 2 0 0 2 2 2 1 DNA methylase N6_Mtase PF02384.16 gi|126179009|ref|YP_001046974.1| - 0.0022 17.3 0.0 0.0073 15.6 0.0 1.7 2 0 0 2 2 2 1 N-6 DNA Methylase MethyltransfD12 PF02086.15 gi|126179009|ref|YP_001046974.1| - 0.067 12.9 0.0 0.098 12.3 0.0 1.1 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase DnaJ_C PF01556.18 gi|126179010|ref|YP_001046975.1| - 3.6e-36 124.5 0.0 4.8e-36 124.1 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|126179010|ref|YP_001046975.1| - 2.9e-28 97.8 2.8 4.8e-28 97.1 2.8 1.3 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|126179010|ref|YP_001046975.1| - 2.6e-12 46.9 19.3 5.2e-12 45.9 19.3 1.5 1 0 0 1 1 1 1 DnaJ central domain HypA PF01155.19 gi|126179010|ref|YP_001046975.1| - 0.014 15.4 6.0 0.34 11.0 0.3 2.4 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|126179010|ref|YP_001046975.1| - 0.2 11.7 10.3 0.58 10.2 10.4 1.7 1 1 0 1 1 1 0 Double zinc ribbon Anti-TRAP PF15777.5 gi|126179010|ref|YP_001046975.1| - 0.41 10.7 22.7 0.11 12.5 7.1 3.1 1 1 2 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein zinc-ribbons_6 PF07191.12 gi|126179010|ref|YP_001046975.1| - 0.72 9.9 6.3 2.3 8.2 6.3 1.9 1 1 0 1 1 1 0 zinc-ribbons TackOD1 PF18551.1 gi|126179010|ref|YP_001046975.1| - 2.1 8.0 5.9 5.8 6.5 3.5 2.1 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 FdhE PF04216.12 gi|126179010|ref|YP_001046975.1| - 5.1 6.9 6.7 8.8 6.1 6.7 1.3 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation HSP70 PF00012.20 gi|126179011|ref|YP_001046976.1| - 6.9e-244 810.5 16.1 1.1e-214 714.2 9.1 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.13 gi|126179011|ref|YP_001046976.1| - 1.5e-20 73.3 3.3 4.9e-20 71.6 3.3 1.8 1 1 0 1 1 1 1 MreB/Mbl protein FGGY_C PF02782.16 gi|126179011|ref|YP_001046976.1| - 0.013 15.2 0.0 0.026 14.2 0.0 1.5 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.6 gi|126179011|ref|YP_001046976.1| - 0.068 13.6 6.6 5.3 7.5 0.0 3.5 3 1 0 3 3 3 0 Cell division protein FtsA MtrB PF05440.12 gi|126179011|ref|YP_001046976.1| - 0.18 12.2 1.0 1.2 9.6 0.0 2.7 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF3347 PF11827.8 gi|126179011|ref|YP_001046976.1| - 1.3 9.2 10.5 2.7 8.2 10.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) GrpE PF01025.19 gi|126179012|ref|YP_001046977.1| - 6e-47 159.4 0.1 6.9e-47 159.2 0.1 1.0 1 0 0 1 1 1 1 GrpE UPF0242 PF06785.11 gi|126179012|ref|YP_001046977.1| - 0.0061 16.7 1.1 0.008 16.3 0.8 1.3 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus TACC_C PF05010.14 gi|126179012|ref|YP_001046977.1| - 0.009 15.8 0.2 0.015 15.1 0.2 1.4 1 1 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal CLZ PF16526.5 gi|126179012|ref|YP_001046977.1| - 0.051 13.9 0.7 0.095 13.1 0.7 1.5 1 0 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Enkurin PF13864.6 gi|126179012|ref|YP_001046977.1| - 0.093 13.2 0.3 0.18 12.2 0.3 1.5 1 0 0 1 1 1 0 Calmodulin-binding AICARFT_IMPCHas PF01808.18 gi|126179013|ref|YP_001046978.1| - 6.8e-110 367.2 0.0 8.4e-110 366.9 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.22 gi|126179013|ref|YP_001046978.1| - 1.8e-21 76.1 0.0 3.4e-21 75.2 0.0 1.5 1 0 0 1 1 1 1 MGS-like domain HasA PF06438.12 gi|126179013|ref|YP_001046978.1| - 0.072 12.7 0.1 3.3 7.3 0.0 2.4 2 1 0 2 2 2 0 Heme-binding protein A (HasA) DUF4013 PF13197.6 gi|126179014|ref|YP_001046979.1| - 9.3e-27 93.9 23.7 9.3e-27 93.9 23.7 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) ATP-synt_E PF05680.12 gi|126179014|ref|YP_001046979.1| - 0.055 13.8 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 ATP synthase E chain TetR_C_14 PF17754.1 gi|126179014|ref|YP_001046979.1| - 0.11 12.5 4.3 0.24 11.3 4.3 1.6 1 0 0 1 1 1 0 MftR C-terminal domain Tim17 PF02466.19 gi|126179014|ref|YP_001046979.1| - 1.3 9.4 8.0 0.54 10.7 2.6 2.4 2 1 0 2 2 2 0 Tim17/Tim22/Tim23/Pmp24 family DUF4013 PF13197.6 gi|126179015|ref|YP_001046980.1| - 3.1e-31 108.5 32.5 3.1e-31 108.5 32.5 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) DUF4013 PF13197.6 gi|126179017|ref|YP_001046982.1| - 1.9e-13 50.6 29.6 1.9e-13 50.6 29.6 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) DUF4271 PF14093.6 gi|126179017|ref|YP_001046982.1| - 1.4 8.7 18.2 2 8.3 18.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4271) RTX PF02382.15 gi|126179017|ref|YP_001046982.1| - 6.4 6.4 7.2 2.1 8.0 4.7 1.4 1 1 0 1 1 1 0 N-terminal domain in RTX protein DUF4013 PF13197.6 gi|126179018|ref|YP_001046983.1| - 5.8e-28 97.8 30.1 5.8e-28 97.8 30.1 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) TrkH PF02386.16 gi|126179018|ref|YP_001046983.1| - 0.01 14.4 0.9 0.01 14.4 0.9 2.2 2 0 0 2 2 2 1 Cation transport protein HMGL-like PF00682.19 gi|126179019|ref|YP_001046984.1| - 1.2e-72 244.7 1.7 2.5e-72 243.6 0.1 2.0 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|126179019|ref|YP_001046984.1| - 8.6e-34 116.3 1.1 1.7e-33 115.4 1.1 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Ribosomal_S11 PF00411.19 gi|126179019|ref|YP_001046984.1| - 0.0024 18.2 3.3 0.29 11.5 0.1 3.3 3 0 0 3 3 3 2 Ribosomal protein S11 Ldh_2 PF02615.14 gi|126179019|ref|YP_001046984.1| - 0.0059 15.8 0.3 0.01 15.0 0.3 1.4 1 0 0 1 1 1 1 Malate/L-lactate dehydrogenase TPP_enzyme_N PF02776.18 gi|126179020|ref|YP_001046985.1| - 3.5e-56 189.5 0.2 1.8e-55 187.2 0.1 2.1 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|126179020|ref|YP_001046985.1| - 9e-55 184.7 0.0 7.3e-54 181.7 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|126179020|ref|YP_001046985.1| - 6e-54 181.5 0.2 9.9e-54 180.8 0.2 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 gi|126179020|ref|YP_001046985.1| - 0.089 12.5 0.2 0.17 11.6 0.2 1.4 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ALS_ss_C PF10369.9 gi|126179021|ref|YP_001046986.1| - 2e-30 104.8 2.7 3.4e-30 104.1 0.4 2.0 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|126179021|ref|YP_001046986.1| - 5.4e-18 64.6 0.4 1.7e-17 63.0 0.1 1.9 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|126179021|ref|YP_001046986.1| - 1.2e-12 47.4 0.6 5.3e-12 45.3 0.1 2.2 2 1 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|126179021|ref|YP_001046986.1| - 5.3e-05 23.7 0.1 0.00011 22.7 0.1 1.6 1 0 0 1 1 1 1 ACT domain Sigma_1s PF02454.16 gi|126179021|ref|YP_001046986.1| - 0.0021 18.0 0.0 0.003 17.5 0.0 1.3 1 0 0 1 1 1 1 Sigma 1s protein UPF0180 PF03698.13 gi|126179021|ref|YP_001046986.1| - 0.0052 16.9 0.2 0.012 15.8 0.2 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0180) ACT_6 PF13740.6 gi|126179021|ref|YP_001046986.1| - 0.022 14.7 0.4 4.9 7.2 0.2 2.8 2 2 0 2 2 2 0 ACT domain YbbR PF07949.12 gi|126179021|ref|YP_001046986.1| - 0.03 14.7 1.4 0.33 11.3 0.2 2.3 2 0 0 2 2 2 0 YbbR-like protein DUF3764 PF12594.8 gi|126179021|ref|YP_001046986.1| - 0.059 13.4 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3764) NIL PF09383.10 gi|126179021|ref|YP_001046986.1| - 0.087 12.7 0.2 0.62 10.0 0.1 2.3 1 1 1 2 2 2 0 NIL domain SSF PF00474.17 gi|126179022|ref|YP_001046987.1| - 6.7e-60 203.1 32.1 9.3e-60 202.6 32.1 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Fer4_16 PF13484.6 gi|126179023|ref|YP_001046988.1| - 8.9e-05 23.4 13.8 0.0073 17.2 2.2 2.4 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|126179023|ref|YP_001046988.1| - 9.9e-05 22.8 4.3 0.0067 17.0 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126179023|ref|YP_001046988.1| - 0.00012 22.2 0.5 0.00012 22.2 0.5 2.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|126179023|ref|YP_001046988.1| - 0.00013 21.7 22.3 0.00026 20.6 4.2 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126179023|ref|YP_001046988.1| - 0.00026 21.1 13.6 0.00077 19.6 13.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Flavodoxin_1 PF00258.25 gi|126179023|ref|YP_001046988.1| - 0.0006 20.0 0.0 0.00096 19.4 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 gi|126179023|ref|YP_001046988.1| - 0.00074 19.8 0.0 0.001 19.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Fer4_18 PF13746.6 gi|126179023|ref|YP_001046988.1| - 0.0027 17.9 4.2 0.0057 16.8 4.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126179023|ref|YP_001046988.1| - 0.003 18.1 14.1 0.043 14.4 14.5 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126179023|ref|YP_001046988.1| - 0.0032 17.5 3.5 0.0032 17.5 3.5 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126179023|ref|YP_001046988.1| - 0.01 15.9 15.5 0.9 9.7 16.8 2.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain FMN_red PF03358.15 gi|126179023|ref|YP_001046988.1| - 0.01 15.6 0.0 0.023 14.4 0.0 1.6 2 0 0 2 2 2 0 NADPH-dependent FMN reductase TetR_C_33 PF13305.6 gi|126179023|ref|YP_001046988.1| - 0.046 14.5 0.1 0.087 13.6 0.1 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Fer4_4 PF12800.7 gi|126179023|ref|YP_001046988.1| - 0.071 13.7 2.9 0.071 13.7 2.9 2.5 3 0 0 3 3 1 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126179024|ref|YP_001046989.1| - 2.6e-07 31.1 6.4 0.00038 21.0 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126179024|ref|YP_001046989.1| - 8e-07 29.9 7.7 0.0026 18.7 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|126179024|ref|YP_001046989.1| - 2.5e-06 27.1 20.6 4.7e-05 23.0 3.2 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126179024|ref|YP_001046989.1| - 4.4e-06 26.7 12.8 9.6e-06 25.7 12.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126179024|ref|YP_001046989.1| - 1.6e-05 24.8 1.8 1.6e-05 24.8 1.8 2.8 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|126179024|ref|YP_001046989.1| - 2.5e-05 24.7 3.7 0.0011 19.4 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126179024|ref|YP_001046989.1| - 3.9e-05 24.1 3.8 0.0026 18.3 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126179024|ref|YP_001046989.1| - 6.1e-05 22.9 4.4 6.1e-05 22.9 4.4 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126179024|ref|YP_001046989.1| - 0.0003 20.9 14.7 0.00038 20.5 0.5 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Flavodoxin_5 PF12724.7 gi|126179024|ref|YP_001046989.1| - 0.00037 20.8 0.0 0.00045 20.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Fer4_4 PF12800.7 gi|126179024|ref|YP_001046989.1| - 0.00075 19.8 3.7 0.00075 19.8 3.7 2.8 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126179024|ref|YP_001046989.1| - 0.017 15.2 17.9 0.017 15.2 17.9 2.4 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126179024|ref|YP_001046989.1| - 0.069 14.1 5.9 0.069 14.1 5.9 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Flavodoxin_1 PF00258.25 gi|126179024|ref|YP_001046989.1| - 0.079 13.2 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin Fer4_22 PF17179.4 gi|126179024|ref|YP_001046989.1| - 2.6 8.9 11.9 0.17 12.7 1.6 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|126179024|ref|YP_001046989.1| - 3.1 8.0 9.4 10 6.4 9.4 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain EHN PF06441.12 gi|126179025|ref|YP_001046990.1| - 1.5e-35 121.8 0.0 2.5e-35 121.1 0.0 1.4 1 0 0 1 1 1 1 Epoxide hydrolase N terminus Abhydrolase_1 PF00561.20 gi|126179025|ref|YP_001046990.1| - 2.4e-14 53.6 0.0 4e-14 52.9 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|126179025|ref|YP_001046990.1| - 1.5e-13 51.9 8.0 1.5e-13 51.9 8.0 1.8 2 0 0 2 2 2 1 Alpha/beta hydrolase family Amino_oxidase PF01593.24 gi|126179026|ref|YP_001046991.1| - 3.5e-24 85.9 0.1 1.2e-23 84.1 0.1 1.7 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|126179026|ref|YP_001046991.1| - 2.1e-10 40.7 0.1 4.6e-10 39.6 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|126179026|ref|YP_001046991.1| - 8.9e-05 23.0 0.3 0.00024 21.6 0.1 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|126179026|ref|YP_001046991.1| - 0.00023 20.9 0.3 0.00053 19.7 0.1 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|126179026|ref|YP_001046991.1| - 0.0011 18.2 0.2 0.0018 17.6 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|126179026|ref|YP_001046991.1| - 0.0036 16.6 0.2 0.0064 15.8 0.0 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase SpoVS PF04232.12 gi|126179026|ref|YP_001046991.1| - 0.037 13.7 0.0 0.095 12.4 0.0 1.6 1 0 0 1 1 1 0 Stage V sporulation protein S (SpoVS) TrkA_N PF02254.18 gi|126179026|ref|YP_001046991.1| - 0.046 14.0 0.0 0.083 13.2 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain FAD_oxidored PF12831.7 gi|126179026|ref|YP_001046991.1| - 0.095 12.0 0.1 0.14 11.5 0.1 1.1 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|126179026|ref|YP_001046991.1| - 0.13 12.3 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HI0933_like PF03486.14 gi|126179026|ref|YP_001046991.1| - 0.31 9.7 0.1 0.55 8.9 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein Glycos_transf_1 PF00534.20 gi|126179027|ref|YP_001046992.1| - 1.1e-17 64.1 0.0 1.5e-17 63.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126179027|ref|YP_001046992.1| - 3.6e-17 63.0 0.0 5.9e-17 62.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126179027|ref|YP_001046992.1| - 2e-11 44.2 0.1 3.8e-11 43.3 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|126179027|ref|YP_001046992.1| - 0.017 15.5 0.0 0.037 14.4 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|126179028|ref|YP_001046993.1| - 2e-32 112.4 0.2 5e-32 111.0 0.1 1.6 1 1 1 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|126179028|ref|YP_001046993.1| - 1.2e-11 45.0 0.2 2.3e-11 44.1 0.2 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|126179028|ref|YP_001046993.1| - 2.9e-07 30.1 0.0 3.7e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|126179028|ref|YP_001046993.1| - 1.3e-06 28.1 0.0 1.7e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|126179028|ref|YP_001046993.1| - 0.007 16.3 0.0 0.0098 15.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 gi|126179028|ref|YP_001046993.1| - 0.014 15.9 0.0 0.028 14.9 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 4HBT PF03061.22 gi|126179029|ref|YP_001046994.1| - 2.6e-09 37.3 1.3 4.1e-09 36.7 1.3 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|126179029|ref|YP_001046994.1| - 9.7e-05 22.5 0.4 0.00012 22.2 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) YiiD_C PF09500.10 gi|126179029|ref|YP_001046994.1| - 0.021 14.7 0.0 2.7 7.8 0.0 2.1 2 0 0 2 2 2 0 Putative thioesterase (yiiD_Cterm) PA-IIL PF07472.11 gi|126179029|ref|YP_001046994.1| - 0.057 13.7 0.0 1.1 9.6 0.0 2.1 2 0 0 2 2 2 0 Fucose-binding lectin II (PA-IIL) PMSR PF01625.21 gi|126179030|ref|YP_001046995.1| - 1.9e-66 223.0 0.0 2.1e-66 222.8 0.0 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF2148 PF09918.9 gi|126179031|ref|YP_001046996.1| - 4.6e-32 109.9 0.2 8.1e-32 109.1 0.2 1.4 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.13 gi|126179031|ref|YP_001046996.1| - 0.00075 19.1 3.5 0.0018 17.9 3.5 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster GHMP_kinases_N PF00288.26 gi|126179032|ref|YP_001046997.1| - 0.0077 16.4 1.0 0.017 15.4 1.0 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain bPH_2 PF03703.14 gi|126179033|ref|YP_001046998.1| - 2.3e-21 75.8 2.2 3.9e-07 30.2 0.1 3.4 3 0 0 3 3 3 3 Bacterial PH domain bPH_2 PF03703.14 gi|126179034|ref|YP_001046999.1| - 2e-19 69.6 0.3 3e-19 69.0 0.3 1.3 1 0 0 1 1 1 1 Bacterial PH domain bPH_4 PF06713.11 gi|126179034|ref|YP_001046999.1| - 0.0068 16.5 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain Fae PF08714.11 gi|126179035|ref|YP_001047000.1| - 3.8e-67 225.2 0.2 7.1e-67 224.3 0.2 1.5 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.24 gi|126179035|ref|YP_001047000.1| - 2.7e-22 79.5 4.0 2e-21 76.6 4.0 2.3 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.17 gi|126179035|ref|YP_001047000.1| - 0.0066 15.9 3.0 0.28 10.6 0.3 2.2 2 0 0 2 2 2 2 PcrB family Ribul_P_3_epim PF00834.19 gi|126179035|ref|YP_001047000.1| - 0.016 14.6 3.4 0.25 10.7 2.8 2.9 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family IMPDH PF00478.25 gi|126179035|ref|YP_001047000.1| - 0.028 13.4 0.5 0.048 12.6 0.5 1.4 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|126179035|ref|YP_001047000.1| - 0.042 12.9 5.0 0.24 10.4 5.0 1.9 1 1 0 1 1 1 0 FMN-dependent dehydrogenase DUF5388 PF17363.2 gi|126179035|ref|YP_001047000.1| - 0.056 13.7 0.2 0.26 11.5 0.0 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5388) DUF4015 PF13200.6 gi|126179035|ref|YP_001047000.1| - 0.13 11.3 0.1 0.27 10.2 0.1 1.5 1 0 0 1 1 1 0 Putative glycosyl hydrolase domain AMP-binding PF00501.28 gi|126179036|ref|YP_001047001.1| - 2.1e-110 369.2 0.0 2.6e-110 368.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|126179036|ref|YP_001047001.1| - 9.2e-21 74.6 0.0 1.3e-19 70.9 0.0 2.5 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding_C_2 PF14535.6 gi|126179036|ref|YP_001047001.1| - 0.001 19.3 0.0 0.0025 18.1 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PhnI PF05861.12 gi|126179036|ref|YP_001047001.1| - 0.095 11.5 0.0 14 4.4 0.0 2.3 2 0 0 2 2 2 0 Bacterial phosphonate metabolism protein (PhnI) Amidohydro_1 PF01979.20 gi|126179037|ref|YP_001047002.1| - 3.6e-68 230.4 0.2 4.4e-68 230.1 0.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|126179037|ref|YP_001047002.1| - 3.4e-14 53.2 0.4 3.3e-10 40.0 0.0 2.4 2 1 0 2 2 2 2 Amidohydrolase family PNP_UDP_1 PF01048.20 gi|126179038|ref|YP_001047003.1| - 8.4e-34 116.8 0.5 9.4e-34 116.7 0.5 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily QRPTase_C PF01729.19 gi|126179039|ref|YP_001047004.1| - 3.5e-23 82.2 0.0 5.2e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|126179039|ref|YP_001047004.1| - 1.5e-08 34.6 0.0 2.8e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|126179039|ref|YP_001047004.1| - 0.0088 16.4 0.0 0.086 13.2 0.0 2.1 1 1 1 2 2 2 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Virulence_fact PF13769.6 gi|126179039|ref|YP_001047004.1| - 0.18 12.0 0.0 0.41 10.9 0.0 1.5 1 0 0 1 1 1 0 Virulence factor Clathrin PF00637.20 gi|126179040|ref|YP_001047005.1| - 0.098 12.5 0.3 0.18 11.7 0.3 1.5 1 0 0 1 1 1 0 Region in Clathrin and VPS N6_Mtase PF02384.16 gi|126179042|ref|YP_001047007.1| - 6.8e-62 209.5 0.0 1.1e-61 208.8 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|126179042|ref|YP_001047007.1| - 3.8e-17 63.2 0.2 1.1e-16 61.7 0.0 1.9 2 0 0 2 2 2 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|126179042|ref|YP_001047007.1| - 2.3e-07 30.7 0.0 4.9e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methylase_S PF01420.19 gi|126179043|ref|YP_001047008.1| - 8.4e-31 107.4 0.0 3e-14 53.6 0.0 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain ResIII PF04851.15 gi|126179044|ref|YP_001047009.1| - 5.4e-35 120.9 0.3 1.4e-34 119.6 0.3 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SWI2_SNF2 PF18766.1 gi|126179044|ref|YP_001047009.1| - 5e-20 72.1 0.2 8.8e-20 71.3 0.2 1.3 1 0 0 1 1 1 1 SWI2/SNF2 ATPase EcoEI_R_C PF08463.10 gi|126179044|ref|YP_001047009.1| - 1.7e-19 70.5 0.0 5e-19 69.0 0.0 1.8 1 0 0 1 1 1 1 EcoEI R protein C-terminal HSDR_N PF04313.14 gi|126179044|ref|YP_001047009.1| - 2.3e-10 40.7 0.2 7.8e-09 35.7 0.0 3.2 3 1 0 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) Helicase_C PF00271.31 gi|126179044|ref|YP_001047009.1| - 1.3e-06 28.7 0.2 0.00018 21.8 0.0 3.5 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|126179044|ref|YP_001047009.1| - 0.00015 21.6 0.0 0.00035 20.4 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF2726 PF10881.8 gi|126179044|ref|YP_001047009.1| - 0.0011 18.8 0.0 0.0027 17.6 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2726) DUF2075 PF09848.9 gi|126179044|ref|YP_001047009.1| - 0.028 13.7 0.0 0.058 12.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.6 gi|126179044|ref|YP_001047009.1| - 0.069 13.5 0.5 0.58 10.5 0.0 2.7 3 0 0 3 3 3 0 AAA ATPase domain SRP54_N PF02881.19 gi|126179044|ref|YP_001047009.1| - 0.073 13.3 1.8 0.43 10.8 0.4 2.7 1 1 1 2 2 2 0 SRP54-type protein, helical bundle domain HSDR_N_2 PF13588.6 gi|126179044|ref|YP_001047009.1| - 0.091 12.8 0.0 0.25 11.4 0.0 1.7 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) AAA_19 PF13245.6 gi|126179044|ref|YP_001047009.1| - 0.13 12.6 0.0 0.34 11.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF3347 PF11827.8 gi|126179045|ref|YP_001047010.1| - 0.054 13.7 1.2 0.13 12.4 1.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) HicB_lk_antitox PF15919.5 gi|126179046|ref|YP_001047011.1| - 1.5e-10 41.2 0.0 1.6e-10 41.1 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 gi|126179047|ref|YP_001047012.1| - 0.001 19.2 0.0 0.001 19.2 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system PHD_like PF12910.7 gi|126179047|ref|YP_001047012.1| - 0.12 12.4 0.2 0.14 12.2 0.2 1.1 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system HicA_toxin PF07927.12 gi|126179048|ref|YP_001047013.1| - 7.3e-05 22.7 0.0 8.8e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, HicA_toxin PF07927.12 gi|126179049|ref|YP_001047014.1| - 1.4e-12 47.4 1.3 1.8e-12 47.1 0.7 1.4 2 0 0 2 2 2 1 HicA toxin of bacterial toxin-antitoxin, VAPB_antitox PF02697.14 gi|126179050|ref|YP_001047015.1| - 0.0015 19.3 0.1 0.0016 19.1 0.1 1.1 1 0 0 1 1 1 1 Putative antitoxin ParE_toxin PF05016.15 gi|126179051|ref|YP_001047016.1| - 1.5e-05 25.5 0.2 1.7e-05 25.3 0.2 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE HTH_34 PF13601.6 gi|126179053|ref|YP_001047018.1| - 7.2e-19 67.8 0.0 8.5e-19 67.5 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|126179053|ref|YP_001047018.1| - 1.3e-10 41.1 0.1 2e-10 40.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.14 gi|126179053|ref|YP_001047018.1| - 7.7e-07 29.0 0.2 1.2e-06 28.4 0.2 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_5 PF01022.20 gi|126179053|ref|YP_001047018.1| - 1.3e-05 25.0 0.0 1.9e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|126179053|ref|YP_001047018.1| - 7.3e-05 23.2 0.1 0.00011 22.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|126179053|ref|YP_001047018.1| - 0.00014 21.4 0.1 0.00019 20.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|126179053|ref|YP_001047018.1| - 0.0031 17.4 0.1 0.0049 16.7 0.1 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|126179053|ref|YP_001047018.1| - 0.015 15.1 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_57 PF18679.1 gi|126179053|ref|YP_001047018.1| - 0.018 15.3 0.0 0.038 14.3 0.0 1.7 1 0 0 1 1 1 0 ThcOx helix turn helix domain HTH_11 PF08279.12 gi|126179053|ref|YP_001047018.1| - 0.033 14.1 0.1 0.052 13.5 0.1 1.4 1 0 0 1 1 1 0 HTH domain MarR PF01047.22 gi|126179053|ref|YP_001047018.1| - 0.076 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|126179053|ref|YP_001047018.1| - 0.1 12.4 0.1 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain RNA_pol_Rpc34 PF05158.12 gi|126179053|ref|YP_001047018.1| - 0.15 11.4 0.0 0.17 11.2 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit PemK_toxin PF02452.17 gi|126179055|ref|YP_001047020.1| - 9.6e-21 74.3 0.0 1.1e-20 74.1 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system HTH_45 PF14947.6 gi|126179057|ref|YP_001047022.1| - 0.0052 16.7 0.0 0.0085 16.1 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|126179057|ref|YP_001047022.1| - 0.0052 17.3 0.1 0.0079 16.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|126179057|ref|YP_001047022.1| - 0.075 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Mrr_N PF14338.6 gi|126179057|ref|YP_001047022.1| - 0.089 12.9 0.1 0.22 11.7 0.1 1.9 1 1 0 1 1 1 0 Mrr N-terminal domain BsuBI_PstI_RE_N PF17728.1 gi|126179057|ref|YP_001047022.1| - 0.1 12.5 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 BsuBI/PstI restriction endonuclease HTH domain DUF86 PF01934.17 gi|126179061|ref|YP_001047026.1| - 3.6e-20 72.0 0.0 4.3e-20 71.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Tegument_dsDNA PF12818.7 gi|126179061|ref|YP_001047026.1| - 0.049 12.8 0.0 0.062 12.4 0.0 1.1 1 0 0 1 1 1 0 dsDNA viral tegument protein DUF4795 PF16043.5 gi|126179061|ref|YP_001047026.1| - 0.13 11.8 0.0 0.21 11.2 0.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) Polbeta PF18765.1 gi|126179062|ref|YP_001047027.1| - 2.1e-16 59.8 0.0 2.5e-16 59.5 0.0 1.0 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|126179062|ref|YP_001047027.1| - 2.3e-12 47.1 0.0 2.8e-12 46.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.6 gi|126179062|ref|YP_001047027.1| - 0.0062 16.7 0.0 0.0071 16.5 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm MdcG PF10620.9 gi|126179062|ref|YP_001047027.1| - 0.059 13.1 0.3 0.078 12.8 0.3 1.3 1 1 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG DUF1281 PF06924.11 gi|126179062|ref|YP_001047027.1| - 0.086 12.4 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1281) PIN PF01850.21 gi|126179063|ref|YP_001047028.1| - 2.2e-06 28.2 0.0 2.4e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|126179063|ref|YP_001047028.1| - 0.034 13.9 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) B3_4 PF03483.17 gi|126179066|ref|YP_001047031.1| - 2.5e-29 102.2 0.0 3.5e-29 101.7 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain Glyoxalase PF00903.25 gi|126179067|ref|YP_001047032.1| - 2.6e-12 47.1 0.0 4.2e-12 46.4 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|126179067|ref|YP_001047032.1| - 3.5e-05 24.0 0.0 6e-05 23.3 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|126179067|ref|YP_001047032.1| - 0.016 16.0 0.0 0.026 15.3 0.0 1.3 1 1 0 1 1 1 0 Glyoxalase-like domain AAA_22 PF13401.6 gi|126179068|ref|YP_001047033.1| - 1.8e-05 25.0 0.0 0.00013 22.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|126179068|ref|YP_001047033.1| - 0.00029 21.3 0.2 0.0015 18.9 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 gi|126179068|ref|YP_001047033.1| - 0.00039 20.4 0.1 0.00098 19.1 0.1 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|126179068|ref|YP_001047033.1| - 0.0012 18.9 0.0 1.5 8.9 0.0 2.4 1 1 0 2 2 2 2 AAA domain AAA_35 PF14516.6 gi|126179068|ref|YP_001047033.1| - 0.0021 16.9 0.0 0.021 13.7 0.0 2.1 1 1 0 1 1 1 1 AAA-like domain AAA-ATPase_like PF09820.9 gi|126179068|ref|YP_001047033.1| - 0.0072 15.8 0.0 0.016 14.6 0.0 1.5 1 1 0 1 1 1 1 Predicted AAA-ATPase MarR_2 PF12802.7 gi|126179069|ref|YP_001047034.1| - 1.3e-08 34.6 0.2 4.8e-08 32.8 0.2 2.0 1 0 0 1 1 1 1 MarR family AAA_16 PF13191.6 gi|126179069|ref|YP_001047034.1| - 2.8e-08 34.3 0.2 9.4e-08 32.6 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain HTH_24 PF13412.6 gi|126179069|ref|YP_001047034.1| - 3.2e-07 29.8 0.0 9.9e-07 28.2 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|126179069|ref|YP_001047034.1| - 3e-06 27.1 0.0 1e-05 25.3 0.0 1.9 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.19 gi|126179069|ref|YP_001047034.1| - 1.4e-05 25.2 0.0 4.5e-05 23.6 0.0 1.8 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain AAA_22 PF13401.6 gi|126179069|ref|YP_001047034.1| - 1.6e-05 25.2 0.0 4e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF2791 PF10923.8 gi|126179069|ref|YP_001047034.1| - 4.7e-05 22.4 0.0 0.00011 21.3 0.0 1.4 1 1 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) HTH_Crp_2 PF13545.6 gi|126179069|ref|YP_001047034.1| - 0.0001 22.2 0.1 0.00032 20.6 0.0 1.9 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|126179069|ref|YP_001047034.1| - 0.00021 21.3 0.0 0.0011 18.9 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|126179069|ref|YP_001047034.1| - 0.00038 20.3 0.0 0.0023 17.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|126179069|ref|YP_001047034.1| - 0.00041 20.1 0.0 0.0014 18.4 0.0 2.0 2 0 0 2 2 1 1 IclR helix-turn-helix domain DprA_WH PF17782.1 gi|126179069|ref|YP_001047034.1| - 0.0013 18.8 1.8 0.0031 17.6 0.1 2.5 3 0 0 3 3 2 1 DprA winged helix domain GntR PF00392.21 gi|126179069|ref|YP_001047034.1| - 0.0016 18.1 0.0 0.0044 16.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Zeta_toxin PF06414.12 gi|126179069|ref|YP_001047034.1| - 0.0028 17.0 0.0 0.0075 15.6 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin LexA_DNA_bind PF01726.16 gi|126179069|ref|YP_001047034.1| - 0.0068 16.1 0.1 0.014 15.1 0.1 1.5 1 0 0 1 1 1 1 LexA DNA binding domain TrmB PF01978.19 gi|126179069|ref|YP_001047034.1| - 0.0089 15.9 0.0 0.021 14.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB AAA_14 PF13173.6 gi|126179069|ref|YP_001047034.1| - 0.028 14.5 0.0 0.075 13.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain HTH_AsnC-type PF13404.6 gi|126179069|ref|YP_001047034.1| - 0.042 13.7 0.2 0.12 12.2 0.2 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain ABC_tran PF00005.27 gi|126179069|ref|YP_001047034.1| - 0.048 14.2 0.0 0.087 13.3 0.0 1.5 1 1 0 1 1 1 0 ABC transporter Cohesin_HEAT PF12765.7 gi|126179069|ref|YP_001047034.1| - 0.06 13.7 1.0 0.2 12.0 1.0 2.0 1 0 0 1 1 1 0 HEAT repeat associated with sister chromatid cohesion Rrf2 PF02082.20 gi|126179069|ref|YP_001047034.1| - 0.063 13.6 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.12 gi|126179069|ref|YP_001047034.1| - 0.13 12.2 0.0 0.28 11.1 0.0 1.6 1 0 0 1 1 1 0 HTH domain DUF815 PF05673.13 gi|126179069|ref|YP_001047034.1| - 0.17 11.0 0.0 0.32 10.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|126179069|ref|YP_001047034.1| - 0.18 11.7 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Methyltransf_25 PF13649.6 gi|126179070|ref|YP_001047035.1| - 2.8e-21 76.0 0.2 4.1e-21 75.5 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126179070|ref|YP_001047035.1| - 1.7e-16 60.6 0.1 3.3e-16 59.7 0.1 1.4 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126179070|ref|YP_001047035.1| - 1.4e-15 57.4 0.0 1.7e-15 57.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126179070|ref|YP_001047035.1| - 4e-15 56.4 0.1 5.2e-15 56.0 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.11 gi|126179070|ref|YP_001047035.1| - 8.4e-13 48.5 0.0 2.2e-12 47.1 0.0 1.5 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_23 PF13489.6 gi|126179070|ref|YP_001047035.1| - 1.6e-12 47.6 0.0 1.9e-12 47.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|126179070|ref|YP_001047035.1| - 3.9e-09 36.2 0.0 5e-09 35.8 0.0 1.0 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|126179070|ref|YP_001047035.1| - 3.4e-07 29.8 0.0 3.9e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|126179070|ref|YP_001047035.1| - 3.7e-07 29.9 0.0 4.8e-07 29.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|126179070|ref|YP_001047035.1| - 4.3e-07 29.5 0.0 5.7e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 gi|126179070|ref|YP_001047035.1| - 2.6e-05 24.0 0.0 3.4e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_9 PF08003.11 gi|126179070|ref|YP_001047035.1| - 0.00033 19.7 0.0 0.00043 19.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|126179070|ref|YP_001047035.1| - 0.0021 17.5 0.0 0.0023 17.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) AdoMet_MTase PF07757.13 gi|126179070|ref|YP_001047035.1| - 0.015 15.6 0.0 0.022 15.1 0.0 1.2 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase DUF938 PF06080.12 gi|126179070|ref|YP_001047035.1| - 0.028 14.2 0.0 0.039 13.7 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_4 PF02390.17 gi|126179070|ref|YP_001047035.1| - 0.037 13.5 0.0 0.082 12.4 0.0 1.5 2 0 0 2 2 2 0 Putative methyltransferase Methyltransf_32 PF13679.6 gi|126179070|ref|YP_001047035.1| - 0.073 13.1 0.0 0.097 12.7 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|126179070|ref|YP_001047035.1| - 0.11 12.1 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MetW PF07021.12 gi|126179070|ref|YP_001047035.1| - 0.13 11.8 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Pox_MCEL PF03291.16 gi|126179070|ref|YP_001047035.1| - 0.25 10.4 0.0 0.88 8.6 0.0 1.7 2 0 0 2 2 2 0 mRNA capping enzyme Acetyltransf_10 PF13673.7 gi|126179071|ref|YP_001047036.1| - 5.5e-14 52.2 0.0 6.3e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|126179071|ref|YP_001047036.1| - 1.1e-10 41.8 0.0 1.7e-10 41.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|126179071|ref|YP_001047036.1| - 2.7e-08 34.1 0.0 4.1e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|126179071|ref|YP_001047036.1| - 0.0001 22.2 0.0 0.00018 21.4 0.0 1.4 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_16 PF05301.11 gi|126179071|ref|YP_001047036.1| - 0.019 14.8 0.0 0.023 14.5 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase, Mec-17 GNAT_acetyltr_2 PF13718.6 gi|126179071|ref|YP_001047036.1| - 0.024 14.1 0.1 0.034 13.5 0.1 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 DUF4405 PF14358.6 gi|126179072|ref|YP_001047037.1| - 5.5e-17 62.1 4.9 6.6e-17 61.8 4.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) Ferric_reduct PF01794.19 gi|126179072|ref|YP_001047037.1| - 0.021 14.9 0.2 0.025 14.7 0.2 1.2 1 0 0 1 1 1 0 Ferric reductase like transmembrane component DUF2070 PF09843.9 gi|126179073|ref|YP_001047038.1| - 1 7.6 7.3 1 7.6 7.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Phage_holin_3_6 PF07332.11 gi|126179073|ref|YP_001047038.1| - 1.1 9.3 11.5 0.094 12.8 5.3 2.0 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF308 PF03729.13 gi|126179076|ref|YP_001047041.1| - 0.00034 20.9 7.0 0.00034 20.9 7.0 3.8 2 1 1 3 3 3 1 Short repeat of unknown function (DUF308) DUF3792 PF12670.7 gi|126179076|ref|YP_001047041.1| - 0.013 15.7 3.5 0.013 15.7 3.5 3.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3792) DUF4271 PF14093.6 gi|126179076|ref|YP_001047041.1| - 0.019 14.9 8.1 0.72 9.7 3.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4271) DUF1616 PF07760.11 gi|126179076|ref|YP_001047041.1| - 2.1 7.7 8.5 3.3 7.0 8.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) MIG-14_Wnt-bd PF06664.12 gi|126179076|ref|YP_001047041.1| - 2.8 7.1 12.0 3.4 6.8 2.8 2.5 1 1 1 2 2 2 0 Wnt-binding factor required for Wnt secretion ADC PF06314.11 gi|126179077|ref|YP_001047042.1| - 2.4e-44 151.7 0.0 2.8e-44 151.4 0.0 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) adh_short PF00106.25 gi|126179078|ref|YP_001047043.1| - 1.5e-51 174.6 0.0 2e-51 174.3 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|126179078|ref|YP_001047043.1| - 4.2e-38 131.2 0.0 5.4e-38 130.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|126179078|ref|YP_001047043.1| - 1.2e-14 54.6 0.0 1.7e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|126179078|ref|YP_001047043.1| - 0.0016 18.0 0.1 0.0019 17.7 0.1 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|126179078|ref|YP_001047043.1| - 0.0084 16.0 0.0 0.01 15.7 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding DUF1776 PF08643.10 gi|126179078|ref|YP_001047043.1| - 0.021 14.2 0.0 0.21 10.9 0.0 2.0 2 0 0 2 2 2 0 Fungal family of unknown function (DUF1776) RmlD_sub_bind PF04321.17 gi|126179078|ref|YP_001047043.1| - 0.14 11.3 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain GSDH PF07995.11 gi|126179079|ref|YP_001047044.1| - 1.9e-33 116.2 0.0 3.1e-33 115.5 0.0 1.3 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase AHSA1 PF08327.11 gi|126179080|ref|YP_001047045.1| - 1.9e-19 70.1 0.1 2.3e-19 69.8 0.1 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.9 gi|126179080|ref|YP_001047045.1| - 1.2e-06 28.9 0.2 1.4e-06 28.6 0.2 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Gate PF07670.14 gi|126179081|ref|YP_001047046.1| - 0.00057 20.1 17.0 0.013 15.8 0.6 3.8 2 2 1 3 3 3 2 Nucleoside recognition SSF PF00474.17 gi|126179083|ref|YP_001047048.1| - 3.8e-50 170.9 44.4 4.8e-50 170.6 44.4 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family ATP19 PF11022.8 gi|126179083|ref|YP_001047048.1| - 0.26 11.7 1.3 0.77 10.2 0.1 2.6 2 0 0 2 2 2 0 ATP synthase subunit K PEGA PF08308.11 gi|126179084|ref|YP_001047049.1| - 1.5e-05 24.8 8.0 0.01 15.7 0.7 2.7 2 1 0 2 2 2 2 PEGA domain Phytoreo_P8 PF07124.11 gi|126179084|ref|YP_001047049.1| - 0.057 12.4 3.9 1.8 7.4 0.7 2.1 2 0 0 2 2 2 0 Phytoreovirus outer capsid protein P8 Soc PF16855.5 gi|126179084|ref|YP_001047049.1| - 0.068 13.7 0.7 0.36 11.3 0.1 2.1 2 0 0 2 2 2 0 Small outer capsid protein TrbC PF04956.13 gi|126179084|ref|YP_001047049.1| - 0.094 12.9 0.7 13 6.1 0.0 2.7 3 0 0 3 3 3 0 TrbC/VIRB2 family HATPase_c PF02518.26 gi|126179085|ref|YP_001047050.1| - 1.8e-21 76.8 0.0 4.3e-21 75.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|126179085|ref|YP_001047050.1| - 3.3e-21 75.6 1.3 6.1e-13 49.0 0.1 2.8 2 1 0 2 2 2 2 PAS fold PAS PF00989.25 gi|126179085|ref|YP_001047050.1| - 9.5e-17 61.0 0.7 1.3e-11 44.5 0.0 3.3 4 0 0 4 4 4 2 PAS fold PAS_9 PF13426.7 gi|126179085|ref|YP_001047050.1| - 1.1e-14 54.6 0.1 2.1e-10 40.8 0.0 3.4 3 1 0 3 3 3 2 PAS domain PAS_3 PF08447.12 gi|126179085|ref|YP_001047050.1| - 4.5e-10 39.7 0.0 7e-09 35.9 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|126179085|ref|YP_001047050.1| - 5.3e-10 39.1 0.5 0.00022 21.2 0.2 2.7 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.7 gi|126179085|ref|YP_001047050.1| - 4.4e-09 36.5 1.7 0.00013 22.1 0.1 3.4 3 1 0 3 3 3 2 PAS fold DUF4118 PF13493.6 gi|126179085|ref|YP_001047050.1| - 1.9e-07 30.8 3.9 4.2e-07 29.7 3.9 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) HATPase_c_2 PF13581.6 gi|126179085|ref|YP_001047050.1| - 3.3e-05 23.8 0.0 9.4e-05 22.4 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|126179085|ref|YP_001047050.1| - 0.0092 15.9 0.0 0.022 14.7 0.0 1.6 1 0 0 1 1 1 1 GHKL domain DUF2339 PF10101.9 gi|126179085|ref|YP_001047050.1| - 0.057 12.0 3.9 0.081 11.5 3.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2339) YycH PF07435.11 gi|126179085|ref|YP_001047050.1| - 0.29 10.0 0.3 0.48 9.3 0.3 1.3 1 0 0 1 1 1 0 YycH protein Peptidase_U4 PF03419.13 gi|126179085|ref|YP_001047050.1| - 0.5 9.6 3.1 1.2 8.3 3.1 1.6 1 1 0 1 1 1 0 Sporulation factor SpoIIGA Transglut_core PF01841.19 gi|126179086|ref|YP_001047051.1| - 9e-23 80.9 0.1 2.6e-22 79.4 0.0 1.8 2 0 0 2 2 2 1 Transglutaminase-like superfamily Fe-ADH PF00465.19 gi|126179087|ref|YP_001047052.1| - 8.1e-108 360.5 4.8 9.1e-108 360.3 4.8 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|126179087|ref|YP_001047052.1| - 1.1e-16 61.3 1.8 1.4e-08 34.7 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase PAS PF00989.25 gi|126179088|ref|YP_001047053.1| - 2.8e-29 101.4 0.0 3.1e-13 49.7 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|126179088|ref|YP_001047053.1| - 2.8e-25 88.6 0.0 3e-12 46.7 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|126179088|ref|YP_001047053.1| - 4.9e-18 65.4 0.0 6.3e-08 32.8 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|126179088|ref|YP_001047053.1| - 1e-15 57.4 0.0 1.9e-06 27.8 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|126179088|ref|YP_001047053.1| - 2.1e-08 34.3 0.0 0.012 15.9 0.0 3.0 2 2 0 2 2 2 2 PAS fold HisKA PF00512.25 gi|126179088|ref|YP_001047053.1| - 0.00037 20.5 0.0 0.0014 18.6 0.0 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|126179088|ref|YP_001047053.1| - 0.0016 18.5 0.5 0.021 15.0 0.0 2.8 3 1 0 3 3 3 1 PAS fold PAS_12 PF18095.1 gi|126179088|ref|YP_001047053.1| - 0.045 13.4 0.0 2.1 8.0 0.0 2.6 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain HypD PF01924.16 gi|126179089|ref|YP_001047054.1| - 2.1e-136 454.6 0.0 2.4e-136 454.5 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family Radical_SAM PF04055.21 gi|126179090|ref|YP_001047055.1| - 5e-18 66.0 0.1 1.3e-17 64.7 0.1 1.6 2 0 0 2 2 2 1 Radical SAM superfamily HTH_20 PF12840.7 gi|126179090|ref|YP_001047055.1| - 5.5e-08 32.7 0.4 1.2e-07 31.6 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|126179090|ref|YP_001047055.1| - 2.2e-07 30.6 0.2 4.6e-07 29.6 0.2 1.5 1 0 0 1 1 1 1 MarR family Fer4_14 PF13394.6 gi|126179090|ref|YP_001047055.1| - 8e-05 22.8 0.0 0.00013 22.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain HTH_5 PF01022.20 gi|126179090|ref|YP_001047055.1| - 0.00013 21.8 0.0 0.00026 20.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|126179090|ref|YP_001047055.1| - 0.00029 20.8 0.1 0.00082 19.3 0.1 1.8 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|126179090|ref|YP_001047055.1| - 0.0003 20.3 0.7 0.00071 19.1 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|126179090|ref|YP_001047055.1| - 0.0017 18.2 0.0 0.0037 17.1 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|126179090|ref|YP_001047055.1| - 0.0033 17.3 0.0 0.0057 16.6 0.0 1.3 1 0 0 1 1 1 1 MarR family DprA_WH PF17782.1 gi|126179090|ref|YP_001047055.1| - 0.0056 16.8 1.8 0.0085 16.2 0.6 1.9 2 0 0 2 2 1 1 DprA winged helix domain HTH_27 PF13463.6 gi|126179090|ref|YP_001047055.1| - 0.0099 16.4 0.0 0.02 15.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|126179090|ref|YP_001047055.1| - 0.014 15.2 0.1 0.049 13.4 0.0 1.9 2 0 0 2 2 2 0 LexA DNA binding domain HTH_10 PF04967.12 gi|126179090|ref|YP_001047055.1| - 0.032 14.1 0.1 0.2 11.5 0.0 2.1 2 0 0 2 2 2 0 HTH DNA binding domain HTH_IclR PF09339.10 gi|126179090|ref|YP_001047055.1| - 0.039 13.7 0.1 0.078 12.8 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Fer4_12 PF13353.6 gi|126179090|ref|YP_001047055.1| - 0.052 13.8 0.0 0.09 13.0 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain FaeA PF04703.12 gi|126179090|ref|YP_001047055.1| - 0.092 13.1 0.0 0.22 11.9 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein AP_endonuc_2 PF01261.24 gi|126179091|ref|YP_001047056.1| - 2.4e-16 59.8 0.1 3.2e-16 59.4 0.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel EF-hand_6 PF13405.6 gi|126179091|ref|YP_001047056.1| - 0.17 11.9 0.3 3 8.0 0.3 2.3 1 1 0 1 1 1 0 EF-hand domain DUF3052 PF11253.8 gi|126179092|ref|YP_001047057.1| - 0.023 14.6 0.0 0.029 14.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3052) FKBP_C PF00254.28 gi|126179093|ref|YP_001047058.1| - 1.6e-12 47.5 0.0 2.1e-12 47.2 0.0 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase GreA_GreB PF01272.19 gi|126179093|ref|YP_001047058.1| - 0.043 13.7 0.2 0.45 10.5 0.0 2.6 3 0 0 3 3 3 0 Transcription elongation factor, GreA/GreB, C-term TRAM PF01938.20 gi|126179093|ref|YP_001047058.1| - 0.079 13.0 0.6 0.74 9.8 0.4 2.5 1 1 1 2 2 2 0 TRAM domain SEC-C PF02810.15 gi|126179094|ref|YP_001047059.1| - 8.3e-10 38.4 8.8 1.5e-09 37.6 8.8 1.4 1 0 0 1 1 1 1 SEC-C motif NERD PF08378.11 gi|126179094|ref|YP_001047059.1| - 0.006 17.0 0.4 0.016 15.7 0.4 1.7 1 0 0 1 1 1 1 Nuclease-related domain 5_nucleotid_C PF02872.18 gi|126179095|ref|YP_001047060.1| - 3e-42 144.5 0.1 1.8e-41 142.0 0.0 2.1 2 0 0 2 2 2 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|126179095|ref|YP_001047060.1| - 4.5e-10 40.4 0.0 6.9e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Rubrerythrin PF02915.17 gi|126179096|ref|YP_001047061.1| - 1.8e-11 44.6 2.4 2.5e-11 44.1 2.4 1.2 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|126179096|ref|YP_001047061.1| - 2.6e-05 24.5 0.2 4e-05 23.9 0.2 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin_2 PF13668.6 gi|126179096|ref|YP_001047061.1| - 0.00032 20.9 2.4 0.0014 18.8 0.3 2.0 1 1 1 2 2 2 1 Ferritin-like domain COQ7 PF03232.13 gi|126179096|ref|YP_001047061.1| - 0.00099 18.9 0.0 0.0014 18.4 0.0 1.2 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Ferritin PF00210.24 gi|126179096|ref|YP_001047061.1| - 0.0036 17.3 3.1 0.0063 16.5 2.8 1.5 1 1 0 1 1 1 1 Ferritin-like domain Mn_catalase PF05067.12 gi|126179096|ref|YP_001047061.1| - 0.022 13.7 0.1 0.024 13.6 0.1 1.0 1 0 0 1 1 1 0 Manganese containing catalase Rhodanese_C PF12368.8 gi|126179097|ref|YP_001047062.1| - 0.016 15.6 3.3 0.018 15.4 3.3 1.2 1 0 0 1 1 1 0 Rhodanase C-terminal zf-RING_4 PF14570.6 gi|126179097|ref|YP_001047062.1| - 0.017 14.9 4.4 0.046 13.5 4.3 1.7 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain DZR PF12773.7 gi|126179097|ref|YP_001047062.1| - 0.045 13.8 3.5 0.057 13.5 3.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon C1_2 PF03107.16 gi|126179097|ref|YP_001047062.1| - 0.93 9.9 6.5 0.95 9.8 0.9 2.2 1 1 1 2 2 2 0 C1 domain zf-C2H2_4 PF13894.6 gi|126179097|ref|YP_001047062.1| - 2.1 9.4 5.9 22 6.2 0.9 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger adh_short PF00106.25 gi|126179098|ref|YP_001047063.1| - 2.8e-39 134.6 0.0 2.1e-38 131.8 0.0 1.9 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|126179098|ref|YP_001047063.1| - 1e-29 103.8 0.0 5.4e-29 101.4 0.0 1.8 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|126179098|ref|YP_001047063.1| - 3.7e-07 30.2 0.1 6.5e-07 29.4 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|126179098|ref|YP_001047063.1| - 0.0073 15.8 0.0 0.0087 15.5 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family HEM4 PF02602.15 gi|126179098|ref|YP_001047063.1| - 0.012 15.0 0.4 0.032 13.6 0.1 1.7 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD AMP-binding PF00501.28 gi|126179099|ref|YP_001047064.1| - 2e-81 273.8 0.0 2.3e-81 273.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|126179099|ref|YP_001047064.1| - 8.4e-25 87.6 0.2 1.6e-24 86.7 0.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain GATase PF00117.28 gi|126179100|ref|YP_001047065.1| - 7e-21 74.9 0.0 7.9e-21 74.7 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|126179100|ref|YP_001047065.1| - 0.00012 21.7 0.1 0.00022 20.9 0.1 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|126179100|ref|YP_001047065.1| - 0.00036 20.3 1.2 0.0058 16.4 0.9 2.4 1 1 0 1 1 1 1 Peptidase C26 SNO PF01174.19 gi|126179100|ref|YP_001047065.1| - 0.012 15.5 0.0 0.043 13.7 0.0 1.8 1 1 0 1 1 1 0 SNO glutamine amidotransferase family PAPS_reduct PF01507.19 gi|126179101|ref|YP_001047066.1| - 2.4e-44 151.4 0.0 3.1e-44 151.1 0.0 1.1 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.20 gi|126179101|ref|YP_001047066.1| - 5.4e-16 58.3 1.1 1e-15 57.4 1.1 1.4 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|126179101|ref|YP_001047066.1| - 0.033 14.4 0.0 0.059 13.6 0.0 1.4 1 0 0 1 1 1 0 UPF0113 PUA domain TrkH PF02386.16 gi|126179104|ref|YP_001047069.1| - 8e-54 182.9 9.7 3.9e-53 180.6 9.7 1.8 1 1 0 1 1 1 1 Cation transport protein PAS_4 PF08448.10 gi|126179106|ref|YP_001047071.1| - 3e-42 143.3 5.9 3.5e-14 53.0 0.5 4.6 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|126179106|ref|YP_001047071.1| - 4.4e-39 132.9 0.0 1.7e-12 47.5 0.0 4.5 4 0 0 4 4 4 4 PAS domain PAS PF00989.25 gi|126179106|ref|YP_001047071.1| - 3.2e-26 91.6 0.1 1.1e-08 35.0 0.0 5.3 4 1 1 5 5 5 3 PAS fold PAS_3 PF08447.12 gi|126179106|ref|YP_001047071.1| - 5.5e-12 45.8 0.0 3e-07 30.6 0.0 4.3 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.7 gi|126179106|ref|YP_001047071.1| - 2.6e-09 36.9 0.1 0.38 10.8 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS_10 PF13596.6 gi|126179106|ref|YP_001047071.1| - 1.9e-06 28.4 0.0 0.017 15.7 0.0 3.6 4 0 0 4 4 4 2 PAS domain HisKA PF00512.25 gi|126179106|ref|YP_001047071.1| - 0.0002 21.4 2.1 0.00055 19.9 0.1 2.9 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|126179106|ref|YP_001047071.1| - 0.013 16.1 0.1 0.81 10.3 0.0 3.3 3 1 0 3 3 3 0 GAF domain PAS_2 PF08446.11 gi|126179106|ref|YP_001047071.1| - 0.018 15.7 0.0 1.1 10.0 0.0 3.1 3 0 0 3 3 2 0 PAS fold GAF_2 PF13185.6 gi|126179106|ref|YP_001047071.1| - 0.076 13.3 1.8 0.23 11.7 0.0 2.7 3 0 0 3 3 3 0 GAF domain GAF_3 PF13492.6 gi|126179106|ref|YP_001047071.1| - 0.11 12.8 0.1 0.74 10.2 0.0 2.4 3 0 0 3 3 3 0 GAF domain RPEL PF02755.15 gi|126179106|ref|YP_001047071.1| - 1 9.1 0.0 1 9.1 0.0 2.8 3 0 0 3 3 2 0 RPEL repeat TaqI_C PF12950.7 gi|126179107|ref|YP_001047072.1| - 8.3e-21 74.3 0.9 3.3e-20 72.3 0.6 2.3 2 0 0 2 2 2 1 TaqI-like C-terminal specificity domain Eco57I PF07669.11 gi|126179107|ref|YP_001047072.1| - 8.7e-15 55.1 0.0 2.3e-14 53.8 0.0 1.6 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.16 gi|126179107|ref|YP_001047072.1| - 5.2e-14 52.2 0.1 1.6e-08 34.2 0.0 3.4 3 1 0 3 3 3 2 N-6 DNA Methylase HSDR_N PF04313.14 gi|126179107|ref|YP_001047072.1| - 8.6e-09 35.6 0.0 4.2e-06 26.8 0.0 2.7 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.6 gi|126179107|ref|YP_001047072.1| - 0.0012 18.8 0.0 0.0032 17.4 0.0 1.7 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) UPF0020 PF01170.18 gi|126179107|ref|YP_001047072.1| - 0.0032 17.2 0.0 0.26 11.0 0.0 2.8 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|126179107|ref|YP_001047072.1| - 0.14 11.9 0.1 5.9 6.7 0.0 2.6 2 0 0 2 2 2 0 Methyltransferase domain DUF4981 PF16353.5 gi|126179109|ref|YP_001047074.1| - 0.0071 16.8 0.0 0.0089 16.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function(DUF4981) NTP_transf_2 PF01909.23 gi|126179110|ref|YP_001047075.1| - 1.1e-13 51.3 0.1 1.2e-13 51.2 0.1 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|126179110|ref|YP_001047075.1| - 2e-13 50.2 0.0 2.4e-13 50.0 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase MdcG PF10620.9 gi|126179110|ref|YP_001047075.1| - 0.16 11.8 0.0 0.41 10.4 0.0 1.7 1 1 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG DUF86 PF01934.17 gi|126179111|ref|YP_001047076.1| - 0.052 13.4 0.0 0.054 13.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF86 Polbeta PF18765.1 gi|126179112|ref|YP_001047077.1| - 4.7e-17 61.9 0.0 5.6e-17 61.6 0.0 1.0 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|126179112|ref|YP_001047077.1| - 2.7e-12 46.8 0.0 3.3e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.6 gi|126179112|ref|YP_001047077.1| - 0.0015 18.7 0.0 0.0017 18.6 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm MdcG PF10620.9 gi|126179112|ref|YP_001047077.1| - 0.0041 16.9 0.1 0.0061 16.4 0.1 1.3 1 1 0 1 1 1 1 Phosphoribosyl-dephospho-CoA transferase MdcG RNase_E_G PF10150.9 gi|126179112|ref|YP_001047077.1| - 0.18 11.2 0.0 0.21 10.9 0.0 1.1 1 0 0 1 1 1 0 Ribonuclease E/G family DUF86 PF01934.17 gi|126179113|ref|YP_001047078.1| - 3.3e-16 59.2 0.0 3.7e-16 59.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Tegument_dsDNA PF12818.7 gi|126179113|ref|YP_001047078.1| - 0.006 15.7 0.0 0.0068 15.6 0.0 1.0 1 0 0 1 1 1 1 dsDNA viral tegument protein Phage_tail_X PF05489.12 gi|126179114|ref|YP_001047079.1| - 0.021 14.5 0.1 2.1 8.1 0.0 2.1 2 0 0 2 2 2 0 Phage Tail Protein X DUF4981 PF16353.5 gi|126179115|ref|YP_001047080.1| - 0.078 13.5 0.0 0.12 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function(DUF4981) PIN PF01850.21 gi|126179116|ref|YP_001047081.1| - 2.1e-17 63.8 1.5 1.5e-16 61.0 1.5 2.0 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|126179116|ref|YP_001047081.1| - 0.00015 22.3 0.9 0.00044 20.8 0.1 2.1 1 1 0 2 2 2 1 PIN domain PIN_3 PF13470.6 gi|126179116|ref|YP_001047081.1| - 0.00026 21.7 0.4 0.0012 19.5 0.4 2.1 1 1 0 1 1 1 1 PIN domain Cas_APE2256 PF09651.10 gi|126179117|ref|YP_001047082.1| - 0.00052 19.9 0.1 0.00088 19.2 0.1 1.4 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) TPR_19 PF14559.6 gi|126179119|ref|YP_001047084.1| - 1e-14 54.8 0.3 5.2e-05 23.7 0.0 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|126179119|ref|YP_001047084.1| - 1.9e-08 34.8 7.1 3.9e-05 24.2 0.6 4.8 2 2 2 5 5 5 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|126179119|ref|YP_001047084.1| - 2e-08 33.7 14.1 0.16 12.1 1.1 7.0 7 1 0 7 7 7 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|126179119|ref|YP_001047084.1| - 3.7e-08 33.5 11.3 1.6 9.8 0.2 6.6 3 1 3 6 6 6 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|126179119|ref|YP_001047084.1| - 5.5e-08 33.0 7.7 0.03 14.6 0.3 5.1 4 1 0 5 5 5 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|126179119|ref|YP_001047084.1| - 7e-07 28.8 4.4 3.7 7.5 0.6 6.2 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|126179119|ref|YP_001047084.1| - 1.2e-06 28.1 0.4 0.55 10.4 0.1 5.5 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|126179119|ref|YP_001047084.1| - 1.3e-06 28.6 4.2 0.5 11.1 0.1 5.7 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|126179119|ref|YP_001047084.1| - 2.5e-06 27.2 0.8 0.94 9.9 0.3 5.8 7 0 0 7 7 5 1 Tetratricopeptide repeat TPR_4 PF07721.14 gi|126179119|ref|YP_001047084.1| - 4.1e-05 23.8 0.7 4.9 8.1 0.0 4.7 4 0 0 4 4 4 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|126179119|ref|YP_001047084.1| - 0.00075 19.7 0.6 0.67 10.2 0.1 2.4 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|126179119|ref|YP_001047084.1| - 0.006 16.4 8.3 18 5.3 0.0 6.1 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|126179119|ref|YP_001047084.1| - 0.0079 15.6 0.0 0.022 14.2 0.0 1.7 1 0 0 1 1 1 1 MalT-like TPR region PPR PF01535.20 gi|126179119|ref|YP_001047084.1| - 0.012 15.8 2.2 14 6.2 0.0 4.4 5 0 0 5 5 4 0 PPR repeat TPR_17 PF13431.6 gi|126179119|ref|YP_001047084.1| - 0.031 14.7 0.2 0.72 10.4 0.1 3.3 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|126179119|ref|YP_001047084.1| - 0.062 13.0 0.4 47 3.8 0.0 3.9 3 1 1 4 4 4 0 TPR repeat TPR_3 PF07720.12 gi|126179119|ref|YP_001047084.1| - 0.064 13.3 0.1 24 5.0 0.5 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat Fungal_trans_2 PF11951.8 gi|126179119|ref|YP_001047084.1| - 0.098 11.5 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 Fungal specific transcription factor domain BTAD PF03704.17 gi|126179119|ref|YP_001047084.1| - 0.18 12.2 2.5 52 4.2 0.0 3.8 3 2 1 4 4 4 0 Bacterial transcriptional activator domain DUF2109 PF09882.9 gi|126179121|ref|YP_001047086.1| - 1e-31 108.8 4.1 1.1e-31 108.6 4.1 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2109) FeoB_associated PF12669.7 gi|126179121|ref|YP_001047086.1| - 3.8 8.0 4.5 5.9 7.4 0.8 2.3 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein PhrC_PhrF PF11131.8 gi|126179121|ref|YP_001047086.1| - 4.9 6.8 7.7 0.7 9.5 1.2 2.2 2 0 0 2 2 2 0 Rap-phr extracellular signalling DUF2108 PF09881.9 gi|126179122|ref|YP_001047087.1| - 9.3e-25 86.4 8.8 1e-24 86.3 8.8 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2108) DUF2107 PF09880.9 gi|126179123|ref|YP_001047088.1| - 7.3e-31 106.1 5.7 8.1e-31 106.0 5.7 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2107) DUF2106 PF09879.9 gi|126179124|ref|YP_001047089.1| - 1.9e-63 212.5 0.7 2.1e-63 212.4 0.7 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2106) DUF2105 PF09878.9 gi|126179125|ref|YP_001047090.1| - 7.3e-75 251.1 15.9 8.1e-75 250.9 15.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2105) MnhB PF04039.13 gi|126179125|ref|YP_001047090.1| - 0.61 10.4 18.4 0.25 11.7 10.5 2.3 1 1 0 2 2 2 0 Domain related to MnhB subunit of Na+/H+ antiporter NADHdeh_related PF10125.9 gi|126179126|ref|YP_001047091.1| - 4.4e-105 349.9 13.6 4.8e-105 349.8 13.6 1.0 1 0 0 1 1 1 1 NADH dehydrogenase I, subunit N related protein DUF5336 PF17270.2 gi|126179127|ref|YP_001047092.1| - 0.035 13.7 1.5 0.035 13.7 1.5 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5336) NADHdh PF00146.21 gi|126179128|ref|YP_001047093.1| - 2.5e-29 102.6 25.3 3e-29 102.3 25.3 1.1 1 0 0 1 1 1 1 NADH dehydrogenase GYF_2 PF14237.6 gi|126179128|ref|YP_001047093.1| - 0.066 13.0 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 GYF domain 2 DUF1959 PF09218.10 gi|126179130|ref|YP_001047095.1| - 9.8e-07 28.9 0.0 1.2e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1959) Oxidored_q6 PF01058.22 gi|126179131|ref|YP_001047096.1| - 3.9e-23 81.7 0.2 4.7e-23 81.4 0.2 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|126179132|ref|YP_001047097.1| - 2e-48 164.8 0.4 2.8e-39 134.9 0.1 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|126179132|ref|YP_001047097.1| - 4.3e-13 49.0 3.9 6e-12 45.2 0.1 2.8 2 1 0 2 2 2 2 Nickel-dependent hydrogenase Fer4_7 PF12838.7 gi|126179133|ref|YP_001047098.1| - 3.6e-17 62.7 20.6 4.5e-08 33.5 9.1 3.2 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126179133|ref|YP_001047098.1| - 3.3e-16 59.1 30.5 4.4e-08 33.1 12.0 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|126179133|ref|YP_001047098.1| - 3.5e-16 58.3 37.1 3.8e-07 29.7 3.1 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126179133|ref|YP_001047098.1| - 8.8e-15 54.6 24.4 5.6e-05 23.2 10.0 3.5 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126179133|ref|YP_001047098.1| - 6.2e-13 48.7 30.1 8.3e-07 29.1 9.5 3.1 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126179133|ref|YP_001047098.1| - 6.1e-12 45.1 38.6 0.00052 20.0 3.4 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.6 gi|126179133|ref|YP_001047098.1| - 2.1e-11 44.1 29.1 2.6e-05 24.6 12.4 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126179133|ref|YP_001047098.1| - 2.4e-10 41.2 29.6 0.0029 18.5 13.6 4.1 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|126179133|ref|YP_001047098.1| - 1.9e-09 37.0 39.2 0.00014 21.8 3.1 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_17 PF13534.6 gi|126179133|ref|YP_001047098.1| - 2.8e-08 34.2 32.1 0.00044 20.7 12.3 3.4 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126179133|ref|YP_001047098.1| - 7.6e-08 32.3 32.7 0.0036 17.7 0.6 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_22 PF17179.4 gi|126179133|ref|YP_001047098.1| - 4e-06 27.6 20.7 0.51 11.2 1.1 4.1 4 0 0 4 4 4 4 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|126179133|ref|YP_001047098.1| - 0.0004 21.1 23.4 0.46 11.3 0.3 4.4 4 0 0 4 4 4 4 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|126179133|ref|YP_001047098.1| - 0.0052 17.6 4.8 0.0052 17.6 4.8 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_13 PF13370.6 gi|126179133|ref|YP_001047098.1| - 0.021 15.4 35.8 0.18 12.4 2.3 4.3 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|126179133|ref|YP_001047098.1| - 0.034 14.4 0.7 0.034 14.4 0.7 4.0 1 1 3 4 4 4 0 4Fe-4S dicluster domain Molydop_binding PF01568.21 gi|126179134|ref|YP_001047099.1| - 1.8e-18 66.5 0.0 2.3e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.22 gi|126179135|ref|YP_001047100.1| - 2.3e-09 36.8 0.0 4.3e-09 35.9 0.0 1.5 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.16 gi|126179135|ref|YP_001047100.1| - 0.035 14.1 2.5 0.082 12.9 2.5 1.6 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Amidohydro_3 PF07969.11 gi|126179136|ref|YP_001047101.1| - 7.9e-78 263.0 0.0 9.4e-78 262.8 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|126179136|ref|YP_001047101.1| - 0.00077 18.9 0.0 0.18 11.1 0.0 2.4 3 0 0 3 3 3 2 Amidohydrolase family GXGXG PF01493.19 gi|126179137|ref|YP_001047102.1| - 4e-13 49.4 24.0 7.7e-11 41.9 17.3 2.4 1 1 1 2 2 2 2 GXGXG motif DUF1922 PF09082.10 gi|126179138|ref|YP_001047103.1| - 4.3e-06 26.9 0.1 5.2e-06 26.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) zf-ACC PF17848.1 gi|126179138|ref|YP_001047103.1| - 0.0021 18.1 0.9 1.5 9.0 0.1 2.5 2 0 0 2 2 2 2 Acetyl-coA carboxylase zinc finger domain NOB1_Zn_bind PF08772.11 gi|126179138|ref|YP_001047103.1| - 0.01 16.0 0.0 0.013 15.6 0.0 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like TF_Zn_Ribbon PF08271.12 gi|126179138|ref|YP_001047103.1| - 0.026 14.0 1.9 0.055 13.0 1.9 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|126179138|ref|YP_001047103.1| - 0.029 13.8 2.2 0.18 11.2 2.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|126179138|ref|YP_001047103.1| - 0.035 13.8 0.1 0.073 12.8 0.1 1.5 1 0 0 1 1 1 0 Ribosomal protein S27 Mu-like_Com PF10122.9 gi|126179138|ref|YP_001047103.1| - 0.046 13.2 0.2 0.77 9.3 0.0 2.1 2 0 0 2 2 2 0 Mu-like prophage protein Com zinc_ribbon_5 PF13719.6 gi|126179138|ref|YP_001047103.1| - 0.046 13.5 1.2 0.13 12.0 1.2 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|126179138|ref|YP_001047103.1| - 0.061 13.3 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbons Zn_Tnp_IS91 PF14319.6 gi|126179138|ref|YP_001047103.1| - 0.068 13.2 1.1 0.13 12.3 0.1 1.8 2 0 0 2 2 2 0 Transposase zinc-binding domain YhfH PF14149.6 gi|126179138|ref|YP_001047103.1| - 0.085 12.9 0.4 3.9 7.5 0.0 2.4 2 0 0 2 2 2 0 YhfH-like protein zf-ISL3 PF14690.6 gi|126179138|ref|YP_001047103.1| - 0.091 13.4 4.0 0.23 12.1 4.0 1.8 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DAO PF01266.24 gi|126179139|ref|YP_001047104.1| - 2.2e-43 149.2 5.1 2.8e-43 148.8 5.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Rieske PF00355.26 gi|126179139|ref|YP_001047104.1| - 3.6e-16 58.9 0.1 7.5e-16 57.8 0.1 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Pyr_redox_2 PF07992.14 gi|126179139|ref|YP_001047104.1| - 3.3e-06 26.5 0.1 3.1e-05 23.4 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|126179139|ref|YP_001047104.1| - 8.2e-06 26.0 0.9 3.1e-05 24.1 0.9 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|126179139|ref|YP_001047104.1| - 0.0002 20.7 0.3 0.49 9.6 0.4 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|126179139|ref|YP_001047104.1| - 0.0003 19.6 0.1 0.0038 16.0 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|126179139|ref|YP_001047104.1| - 0.00038 19.8 1.3 0.00059 19.2 1.3 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|126179139|ref|YP_001047104.1| - 0.00045 19.7 0.6 0.0009 18.7 0.6 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|126179139|ref|YP_001047104.1| - 0.00053 19.4 2.4 0.68 9.1 0.3 2.9 2 1 0 2 2 2 2 Flavin containing amine oxidoreductase Trp_halogenase PF04820.14 gi|126179139|ref|YP_001047104.1| - 0.0056 15.6 0.8 0.0056 15.6 0.8 1.4 2 0 0 2 2 2 1 Tryptophan halogenase Pyr_redox PF00070.27 gi|126179139|ref|YP_001047104.1| - 0.0067 17.0 0.6 0.018 15.6 0.6 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|126179139|ref|YP_001047104.1| - 0.01 14.9 0.7 0.017 14.2 0.7 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|126179139|ref|YP_001047104.1| - 0.018 14.1 4.2 0.28 10.2 3.4 2.2 1 1 1 2 2 2 0 FAD binding domain Rieske_2 PF13806.6 gi|126179139|ref|YP_001047104.1| - 0.028 14.3 0.0 0.1 12.5 0.0 1.9 2 0 0 2 2 2 0 Rieske-like [2Fe-2S] domain Thi4 PF01946.17 gi|126179139|ref|YP_001047104.1| - 0.038 13.2 0.0 0.065 12.5 0.0 1.4 1 0 0 1 1 1 0 Thi4 family 3HCDH_N PF02737.18 gi|126179139|ref|YP_001047104.1| - 0.083 12.8 0.2 0.14 12.1 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|126179139|ref|YP_001047104.1| - 0.25 11.3 1.5 9.3 6.2 0.0 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding ApbA PF02558.16 gi|126179139|ref|YP_001047104.1| - 0.5 10.0 1.9 1.3 8.7 1.2 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Glycos_transf_1 PF00534.20 gi|126179140|ref|YP_001047105.1| - 8.1e-29 100.3 0.0 1.2e-28 99.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126179140|ref|YP_001047105.1| - 3.3e-16 59.9 0.1 6e-16 59.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|126179140|ref|YP_001047105.1| - 2.4e-15 56.7 0.0 7.2e-15 55.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 GGDEF_2 PF17853.1 gi|126179140|ref|YP_001047105.1| - 0.031 14.5 0.8 0.098 12.9 0.3 2.2 1 1 1 2 2 2 0 GGDEF-like domain F420_ligase PF01996.16 gi|126179142|ref|YP_001047107.1| - 3.2e-59 200.2 0.0 3.7e-59 200.0 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Amidohydro_1 PF01979.20 gi|126179143|ref|YP_001047108.1| - 1.1e-19 71.0 0.2 1.8e-16 60.4 0.2 2.6 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|126179143|ref|YP_001047108.1| - 3.8e-11 42.9 0.0 4.8e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Usp PF00582.26 gi|126179144|ref|YP_001047109.1| - 1.1e-34 119.9 0.2 1.2e-34 119.8 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family Carot_N PF09150.10 gi|126179144|ref|YP_001047109.1| - 0.18 11.7 0.0 0.23 11.3 0.0 1.2 1 0 0 1 1 1 0 Orange carotenoid protein, N-terminal CBS PF00571.28 gi|126179145|ref|YP_001047110.1| - 1.9e-42 143.5 8.7 6e-15 55.4 0.1 4.1 4 0 0 4 4 4 4 CBS domain Peptidase_S55 PF05580.12 gi|126179145|ref|YP_001047110.1| - 0.012 15.5 0.1 0.34 10.8 0.0 2.2 2 0 0 2 2 2 0 SpoIVB peptidase S55 IF3_N PF05198.16 gi|126179145|ref|YP_001047110.1| - 0.031 14.6 0.2 0.52 10.6 0.0 2.8 3 0 0 3 3 3 0 Translation initiation factor IF-3, N-terminal domain HTH_42 PF06224.12 gi|126179145|ref|YP_001047110.1| - 0.06 12.9 0.2 3.1 7.3 0.0 2.2 1 1 1 2 2 2 0 Winged helix DNA-binding domain GAF PF01590.26 gi|126179145|ref|YP_001047110.1| - 0.088 13.4 1.0 10 6.7 0.1 2.8 2 2 1 3 3 3 0 GAF domain Proteasome PF00227.26 gi|126179146|ref|YP_001047111.1| - 1.4e-56 191.0 1.2 1.6e-56 190.8 1.2 1.0 1 0 0 1 1 1 1 Proteasome subunit KH_7 PF17214.3 gi|126179147|ref|YP_001047112.1| - 1.4e-27 95.4 2.8 2e-26 91.7 0.5 2.7 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|126179147|ref|YP_001047112.1| - 1.9e-23 82.9 0.0 3.6e-23 82.0 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_6 PF16661.5 gi|126179147|ref|YP_001047112.1| - 7.7e-15 54.8 0.0 1.2e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|126179147|ref|YP_001047112.1| - 1.2e-14 53.9 0.4 3.2e-14 52.6 0.1 2.0 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|126179147|ref|YP_001047112.1| - 6.6e-12 45.9 0.0 1.1e-08 35.3 0.0 2.5 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|126179147|ref|YP_001047112.1| - 1e-07 31.7 0.0 2.1e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|126179147|ref|YP_001047112.1| - 1.7e-05 24.5 1.1 5.5e-05 22.9 0.1 2.3 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|126179147|ref|YP_001047112.1| - 7.9e-05 22.6 0.0 0.00018 21.4 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.29 gi|126179147|ref|YP_001047112.1| - 0.02 14.7 0.1 0.12 12.3 0.1 2.2 2 0 0 2 2 2 0 KH domain DUF3489 PF11994.8 gi|126179147|ref|YP_001047112.1| - 0.11 12.6 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) MFS_1 PF07690.16 gi|126179148|ref|YP_001047113.1| - 7.2e-19 67.9 50.5 7.2e-19 67.9 50.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Aldedh PF00171.22 gi|126179149|ref|YP_001047114.1| - 7.3e-160 532.5 0.0 8.9e-160 532.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|126179149|ref|YP_001047114.1| - 0.035 13.6 0.0 0.056 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1487) Fasciclin PF02469.22 gi|126179150|ref|YP_001047115.1| - 9.1e-32 110.0 1.7 1.9e-31 109.0 1.7 1.5 1 1 0 1 1 1 1 Fasciclin domain DUF4097 PF13349.6 gi|126179150|ref|YP_001047115.1| - 0.011 15.1 0.4 0.014 14.7 0.4 1.2 1 0 0 1 1 1 0 Putative adhesin Fasciclin PF02469.22 gi|126179151|ref|YP_001047116.1| - 5.5e-20 71.9 0.1 1.4e-19 70.6 0.1 1.7 1 0 0 1 1 1 1 Fasciclin domain DUF4430 PF14478.6 gi|126179151|ref|YP_001047116.1| - 0.0015 19.1 0.3 0.012 16.2 0.1 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF4430) Cupin_2 PF07883.11 gi|126179153|ref|YP_001047118.1| - 3.2e-12 46.0 0.0 3.9e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|126179153|ref|YP_001047118.1| - 4.3e-07 29.9 0.0 4.9e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|126179153|ref|YP_001047118.1| - 4.1e-05 23.2 0.0 4.8e-05 23.0 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Asp_Arg_Hydrox PF05118.15 gi|126179153|ref|YP_001047118.1| - 0.00016 21.6 0.0 0.00023 21.0 0.0 1.3 1 1 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase Cupin_6 PF12852.7 gi|126179153|ref|YP_001047118.1| - 0.004 16.9 0.0 0.0045 16.7 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_1 PF00190.22 gi|126179153|ref|YP_001047118.1| - 0.031 13.9 0.0 0.034 13.7 0.0 1.2 1 0 0 1 1 1 0 Cupin Ppnp PF06865.11 gi|126179153|ref|YP_001047118.1| - 0.047 14.1 0.0 0.071 13.5 0.0 1.3 1 1 0 1 1 1 0 Pyrimidine/purine nucleoside phosphorylase EutQ PF06249.12 gi|126179153|ref|YP_001047118.1| - 0.055 13.2 0.0 0.061 13.1 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ AraC_N PF06719.13 gi|126179153|ref|YP_001047118.1| - 0.071 12.8 0.0 0.13 11.9 0.0 1.4 2 0 0 2 2 2 0 AraC-type transcriptional regulator N-terminus Fer4_5 PF12801.7 gi|126179154|ref|YP_001047119.1| - 8.4e-17 60.9 7.6 1.3e-11 44.3 0.8 4.5 6 0 0 6 6 6 2 4Fe-4S binding domain Fer4 PF00037.27 gi|126179154|ref|YP_001047119.1| - 1.4e-11 43.7 28.0 7.8e-07 28.7 4.3 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126179154|ref|YP_001047119.1| - 4.7e-10 39.9 16.2 3.3e-06 27.6 4.8 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126179154|ref|YP_001047119.1| - 1.2e-09 38.1 16.7 8.4e-07 29.1 3.1 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126179154|ref|YP_001047119.1| - 1e-07 32.8 18.2 0.033 15.1 4.2 4.1 2 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|126179154|ref|YP_001047119.1| - 5.9e-07 30.0 30.7 0.0029 18.4 5.4 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126179154|ref|YP_001047119.1| - 1.6e-06 28.1 19.7 0.00017 21.6 15.1 3.6 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126179154|ref|YP_001047119.1| - 3.1e-06 27.0 28.1 8.5e-06 25.6 4.5 4.2 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|126179154|ref|YP_001047119.1| - 0.00022 21.5 28.5 0.00023 21.4 4.3 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126179154|ref|YP_001047119.1| - 0.00026 21.1 18.4 0.006 16.7 4.2 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126179154|ref|YP_001047119.1| - 0.00032 20.6 29.0 0.00082 19.3 4.5 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|126179154|ref|YP_001047119.1| - 0.00061 20.3 19.9 0.099 13.2 7.1 3.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126179154|ref|YP_001047119.1| - 0.0013 19.1 19.8 0.056 13.9 2.2 3.5 2 1 3 5 5 4 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|126179154|ref|YP_001047119.1| - 0.007 16.5 17.5 0.038 14.2 12.8 3.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|126179154|ref|YP_001047119.1| - 0.054 14.3 16.7 0.19 12.6 4.3 2.7 2 1 1 3 3 2 0 4Fe-4S dicluster domain Cupin_2 PF07883.11 gi|126179155|ref|YP_001047120.1| - 7.6e-15 54.4 0.1 1.2e-14 53.7 0.1 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|126179155|ref|YP_001047120.1| - 0.001 18.9 0.0 0.0014 18.6 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|126179155|ref|YP_001047120.1| - 0.037 13.6 0.0 0.057 13.0 0.0 1.3 1 1 0 1 1 1 0 Cupin AraC_binding_2 PF14525.6 gi|126179155|ref|YP_001047120.1| - 0.047 13.4 0.0 0.049 13.3 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Pirin_C PF05726.13 gi|126179155|ref|YP_001047120.1| - 0.05 14.0 0.0 0.07 13.5 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain DUF2115 PF09888.9 gi|126179156|ref|YP_001047121.1| - 3e-49 167.7 0.0 3.7e-49 167.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) TrmB PF01978.19 gi|126179157|ref|YP_001047122.1| - 2.4e-19 69.0 0.0 3.5e-19 68.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|126179157|ref|YP_001047122.1| - 0.047 13.5 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|126179157|ref|YP_001047122.1| - 0.054 13.4 0.1 0.11 12.4 0.1 1.6 1 0 0 1 1 1 0 MarR family NIR_SIR PF01077.22 gi|126179158|ref|YP_001047123.1| - 1.2e-22 80.1 0.0 2.8e-22 78.9 0.0 1.5 2 0 0 2 2 2 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|126179158|ref|YP_001047123.1| - 1.8e-12 46.9 0.0 3.5e-12 46.0 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain PMBR PF09373.10 gi|126179158|ref|YP_001047123.1| - 0.043 14.0 0.1 0.11 12.7 0.1 1.7 1 0 0 1 1 1 0 Pseudomurein-binding repeat DUF488 PF04343.13 gi|126179159|ref|YP_001047124.1| - 1.2e-34 119.6 1.8 1.3e-34 119.4 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF488 MerR-DNA-bind PF09278.11 gi|126179159|ref|YP_001047124.1| - 0.039 14.5 0.2 0.091 13.3 0.2 1.6 1 0 0 1 1 1 0 MerR, DNA binding Big_2 PF02368.18 gi|126179160|ref|YP_001047125.1| - 6.4e-89 291.9 114.5 2.8e-13 49.6 13.5 9.5 9 0 0 9 9 9 8 Bacterial Ig-like domain (group 2) Invasin_D3 PF09134.10 gi|126179160|ref|YP_001047125.1| - 5.4e-10 39.4 127.1 0.034 14.5 11.4 10.1 6 2 4 10 10 10 8 Invasin, domain 3 Big_1 PF02369.16 gi|126179160|ref|YP_001047125.1| - 0.00013 21.9 138.2 0.13 12.3 12.1 13.6 10 5 0 10 10 10 6 Bacterial Ig-like domain (group 1) Glyco_hydro_59M PF17387.2 gi|126179160|ref|YP_001047125.1| - 0.15 12.2 10.9 9.1 6.5 0.0 5.4 6 0 0 6 6 6 0 Glycosyl hydrolase family 59 central domain DUF2382 PF09557.10 gi|126179160|ref|YP_001047125.1| - 7.3 6.9 13.8 0.43 10.8 1.0 4.3 4 0 0 4 4 4 0 Domain of unknown function (DUF2382) Big_2 PF02368.18 gi|126179161|ref|YP_001047126.1| - 7.1e-74 243.7 55.5 9.9e-12 44.6 7.4 9.8 9 0 0 9 9 9 9 Bacterial Ig-like domain (group 2) Invasin_D3 PF09134.10 gi|126179161|ref|YP_001047126.1| - 3.4e-17 62.5 79.7 0.00038 20.7 2.8 9.2 7 2 2 9 9 9 6 Invasin, domain 3 Big_1 PF02369.16 gi|126179161|ref|YP_001047126.1| - 1.3e-12 47.6 65.5 0.0055 16.7 6.7 13.3 9 6 1 10 10 10 6 Bacterial Ig-like domain (group 1) bMG6 PF17962.1 gi|126179161|ref|YP_001047126.1| - 0.023 14.8 0.0 26 5.0 0.0 4.4 5 0 0 5 5 5 0 Bacterial macroglobulin domain 6 Phage_holin_Dp1 PF16938.5 gi|126179161|ref|YP_001047126.1| - 2.4 8.5 7.2 50 4.2 0.0 5.2 6 0 0 6 6 6 0 Putative phage holin Dp-1 Glyco_hydro2_C5 PF18565.1 gi|126179161|ref|YP_001047126.1| - 8.5 6.3 14.8 7.4 6.5 0.1 6.3 6 1 0 6 6 6 0 Glycoside hydrolase family 2 C-terminal domain 5 DUF3800 PF12686.7 gi|126179163|ref|YP_001047128.1| - 3.5e-18 66.4 1.3 4.8e-18 65.9 1.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3800) DUF4298 PF14131.6 gi|126179163|ref|YP_001047128.1| - 0.083 12.9 0.3 0.17 11.8 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4298) MENTAL PF10457.9 gi|126179164|ref|YP_001047129.1| - 0.035 13.9 2.7 0.05 13.4 2.7 1.1 1 0 0 1 1 1 0 Cholesterol-capturing domain DUF805 PF05656.14 gi|126179164|ref|YP_001047129.1| - 4.2 7.8 7.6 7.3 7.1 7.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF805) DUF202 PF02656.15 gi|126179165|ref|YP_001047130.1| - 0.75 10.3 6.0 0.41 11.1 1.8 2.3 1 1 2 3 3 3 0 Domain of unknown function (DUF202) Pilin_N PF07790.11 gi|126179166|ref|YP_001047131.1| - 1.3e-19 70.9 6.6 1.9e-19 70.3 4.6 1.9 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal FUSC-like PF12805.7 gi|126179166|ref|YP_001047131.1| - 1.1 8.3 2.8 1.5 7.9 2.8 1.1 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS DUF86 PF01934.17 gi|126179167|ref|YP_001047132.1| - 2.1e-10 40.5 0.1 2.1e-10 40.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 YhcG_C PF06250.11 gi|126179168|ref|YP_001047133.1| - 4.4e-53 179.3 0.1 6.8e-53 178.7 0.1 1.2 1 0 0 1 1 1 1 YhcG PDDEXK nuclease domain DUF1016_N PF17761.1 gi|126179168|ref|YP_001047133.1| - 6.2e-24 84.7 0.0 4.2e-22 78.8 0.0 2.6 2 1 0 2 2 2 1 DUF1016 N-terminal domain HTH_ParB PF17762.1 gi|126179168|ref|YP_001047133.1| - 0.013 15.2 0.1 1.9 8.4 0.0 2.6 2 0 0 2 2 2 0 HTH domain found in ParB protein HSDR_N_2 PF13588.6 gi|126179168|ref|YP_001047133.1| - 0.018 15.0 0.0 0.072 13.1 0.0 1.9 2 0 0 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) A-2_8-polyST PF07388.11 gi|126179168|ref|YP_001047133.1| - 0.065 11.8 0.0 0.096 11.3 0.0 1.2 1 0 0 1 1 1 0 Alpha-2,8-polysialyltransferase (POLYST) NTP_transf_2 PF01909.23 gi|126179169|ref|YP_001047134.1| - 0.00017 21.8 0.0 0.00017 21.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|126179169|ref|YP_001047134.1| - 0.0012 18.9 0.0 0.0012 18.9 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Zn_ribbon_2 PF12674.7 gi|126179170|ref|YP_001047135.1| - 1.1e-55 186.3 5.8 8e-28 96.9 2.0 2.0 2 0 0 2 2 2 2 Putative zinc ribbon domain zf_C2H2_13 PF18508.1 gi|126179170|ref|YP_001047135.1| - 0.0028 17.2 0.6 2.6 7.7 0.1 2.5 2 0 0 2 2 2 2 Zinc finger domain LIM PF00412.22 gi|126179170|ref|YP_001047135.1| - 0.0081 16.4 6.7 0.38 11.0 1.4 2.3 2 0 0 2 2 2 2 LIM domain A2L_zn_ribbon PF08792.10 gi|126179170|ref|YP_001047135.1| - 0.0086 15.8 5.3 2.4 8.0 0.1 3.8 4 0 0 4 4 4 2 A2L zinc ribbon domain Auto_anti-p27 PF06677.12 gi|126179170|ref|YP_001047135.1| - 0.031 14.4 9.4 0.14 12.3 0.7 3.0 2 2 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.6 gi|126179170|ref|YP_001047135.1| - 0.12 12.1 10.6 15 5.5 0.1 4.2 4 0 0 4 4 4 0 zinc-ribbon domain PHF5 PF03660.14 gi|126179170|ref|YP_001047135.1| - 0.29 11.3 2.7 11 6.3 0.2 2.2 2 0 0 2 2 2 0 PHF5-like protein DZR PF12773.7 gi|126179170|ref|YP_001047135.1| - 0.4 10.7 12.4 1.1 9.4 2.7 3.2 2 2 0 2 2 2 0 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|126179170|ref|YP_001047135.1| - 5 7.2 7.2 5.1 7.2 0.6 2.5 2 1 1 3 3 3 0 zinc-ribbons DUF4599 PF15371.6 gi|126179171|ref|YP_001047136.1| - 0.079 13.5 0.0 0.11 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4599) Bax1-I PF01027.20 gi|126179172|ref|YP_001047137.1| - 0.00021 21.2 8.8 0.00024 21.0 8.8 1.0 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 OAD_beta PF03977.13 gi|126179172|ref|YP_001047137.1| - 0.0069 15.4 4.1 0.0069 15.4 4.1 1.4 1 1 0 1 1 1 1 Na+-transporting oxaloacetate decarboxylase beta subunit MatE PF01554.18 gi|126179172|ref|YP_001047137.1| - 0.0094 15.6 2.8 0.0094 15.6 2.8 1.9 1 1 1 2 2 2 1 MatE FixQ PF05545.11 gi|126179172|ref|YP_001047137.1| - 0.23 11.5 0.2 0.23 11.5 0.2 2.9 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ DUF3098 PF11297.8 gi|126179172|ref|YP_001047137.1| - 9.4 5.9 12.4 12 5.5 0.8 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF3098) HTH_AsnC-type PF13404.6 gi|126179173|ref|YP_001047138.1| - 4e-16 58.5 0.1 5.9e-16 58.0 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|126179173|ref|YP_001047138.1| - 8e-14 50.9 0.1 1.2e-13 50.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|126179173|ref|YP_001047138.1| - 2.7e-09 36.8 0.0 4.4e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain MarR PF01047.22 gi|126179173|ref|YP_001047138.1| - 1.1e-06 28.4 0.0 1.8e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|126179173|ref|YP_001047138.1| - 4e-06 26.7 0.1 1.1e-05 25.3 0.1 1.6 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|126179173|ref|YP_001047138.1| - 4.8e-06 26.4 0.0 8.4e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|126179173|ref|YP_001047138.1| - 0.00011 21.9 0.0 0.00032 20.4 0.0 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|126179173|ref|YP_001047138.1| - 0.00021 21.3 0.0 0.0004 20.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|126179173|ref|YP_001047138.1| - 0.00025 20.9 0.3 0.00055 19.8 0.1 1.7 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 gi|126179173|ref|YP_001047138.1| - 0.0018 18.0 0.0 0.0034 17.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|126179173|ref|YP_001047138.1| - 0.0027 18.2 0.0 0.0062 17.0 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|126179173|ref|YP_001047138.1| - 0.0032 17.6 0.0 0.0071 16.5 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|126179173|ref|YP_001047138.1| - 0.0034 17.2 0.0 0.0055 16.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|126179173|ref|YP_001047138.1| - 0.0068 16.0 0.1 0.3 10.8 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|126179173|ref|YP_001047138.1| - 0.034 14.5 0.0 0.064 13.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_23 PF13384.6 gi|126179173|ref|YP_001047138.1| - 0.037 13.8 0.0 0.068 13.0 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain LexA_DNA_bind PF01726.16 gi|126179173|ref|YP_001047138.1| - 0.059 13.2 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain HTH_38 PF13936.6 gi|126179173|ref|YP_001047138.1| - 0.064 13.0 0.1 0.22 11.3 0.1 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|126179173|ref|YP_001047138.1| - 0.073 13.2 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC E3_UFM1_ligase PF09743.9 gi|126179173|ref|YP_001047138.1| - 0.078 12.6 0.0 0.093 12.3 0.0 1.2 1 0 0 1 1 1 0 E3 UFM1-protein ligase 1 TrmB PF01978.19 gi|126179173|ref|YP_001047138.1| - 0.12 12.3 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Phos_pyr_kin PF08543.12 gi|126179174|ref|YP_001047139.1| - 2.6e-80 269.4 0.0 2.9e-80 269.2 0.0 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|126179174|ref|YP_001047139.1| - 8.5e-09 35.1 0.0 1.2e-08 34.6 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.15 gi|126179174|ref|YP_001047139.1| - 0.035 13.5 0.6 0.064 12.6 0.6 1.5 1 1 0 1 1 1 0 Hydroxyethylthiazole kinase family AIRS_C PF02769.22 gi|126179175|ref|YP_001047140.1| - 3.5e-18 66.2 0.9 3.5e-18 66.2 0.9 1.7 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|126179175|ref|YP_001047140.1| - 2.4e-08 34.5 2.9 8.3e-08 32.8 2.9 1.9 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain NTP_transf_2 PF01909.23 gi|126179176|ref|YP_001047141.1| - 1.9e-13 50.5 0.0 2.1e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|126179176|ref|YP_001047141.1| - 9.4e-11 41.7 0.0 1e-10 41.5 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase MdcG PF10620.9 gi|126179176|ref|YP_001047141.1| - 2.7e-06 27.3 0.6 5.4e-06 26.3 0.6 1.5 1 1 0 1 1 1 1 Phosphoribosyl-dephospho-CoA transferase MdcG DUF86 PF01934.17 gi|126179177|ref|YP_001047142.1| - 3.8e-25 88.1 0.0 4.3e-25 87.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Serpin PF00079.20 gi|126179178|ref|YP_001047143.1| - 1.3e-117 393.2 0.0 1.5e-117 393.1 0.0 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) HTH_20 PF12840.7 gi|126179179|ref|YP_001047144.1| - 7e-13 48.4 1.8 8.7e-13 48.1 0.3 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|126179179|ref|YP_001047144.1| - 1.5e-12 47.2 0.3 3.2e-12 46.1 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|126179179|ref|YP_001047144.1| - 1.6e-09 37.2 0.0 2.8e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|126179179|ref|YP_001047144.1| - 2.2e-09 37.0 0.4 4.1e-09 36.1 0.4 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|126179179|ref|YP_001047144.1| - 4.7e-06 26.4 1.1 5e-06 26.3 0.1 1.6 2 0 0 2 2 1 1 MarR family TrmB PF01978.19 gi|126179179|ref|YP_001047144.1| - 3.5e-05 23.6 0.0 5.2e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|126179179|ref|YP_001047144.1| - 4.6e-05 23.3 0.0 7.1e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix Penicillinase_R PF03965.16 gi|126179179|ref|YP_001047144.1| - 6e-05 23.4 0.0 8.9e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor MarR PF01047.22 gi|126179179|ref|YP_001047144.1| - 7.9e-05 22.5 0.2 0.00013 21.8 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|126179179|ref|YP_001047144.1| - 0.00014 21.8 0.1 0.00021 21.2 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_10 PF04967.12 gi|126179179|ref|YP_001047144.1| - 0.00014 21.6 0.1 0.00023 20.9 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_27 PF13463.6 gi|126179179|ref|YP_001047144.1| - 0.00016 22.1 0.0 0.00027 21.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|126179179|ref|YP_001047144.1| - 0.00046 20.3 0.0 0.00066 19.8 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain PadR PF03551.14 gi|126179179|ref|YP_001047144.1| - 0.0018 18.2 0.0 0.0026 17.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_40 PF14493.6 gi|126179179|ref|YP_001047144.1| - 0.0023 18.4 0.0 0.0035 17.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|126179179|ref|YP_001047144.1| - 0.0028 17.4 0.0 0.005 16.6 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_34 PF13601.6 gi|126179179|ref|YP_001047144.1| - 0.0033 17.6 0.0 0.0061 16.7 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|126179179|ref|YP_001047144.1| - 0.0065 16.8 0.0 0.011 16.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_Mga PF08280.11 gi|126179179|ref|YP_001047144.1| - 0.0075 16.3 0.2 0.012 15.6 0.2 1.2 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain RP-C PF03428.13 gi|126179179|ref|YP_001047144.1| - 0.0077 15.9 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_23 PF13384.6 gi|126179179|ref|YP_001047144.1| - 0.0083 15.9 0.1 0.023 14.5 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|126179179|ref|YP_001047144.1| - 0.0098 15.8 0.2 0.029 14.3 0.0 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|126179179|ref|YP_001047144.1| - 0.021 14.6 0.0 0.04 13.7 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_38 PF13936.6 gi|126179179|ref|YP_001047144.1| - 0.034 13.9 0.7 0.091 12.5 0.2 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_35 PF13693.6 gi|126179179|ref|YP_001047144.1| - 0.036 14.1 0.1 0.068 13.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Mga PF05043.13 gi|126179179|ref|YP_001047144.1| - 0.06 13.9 0.1 0.082 13.5 0.1 1.2 1 0 0 1 1 1 0 Mga helix-turn-helix domain SpoIIID PF12116.8 gi|126179179|ref|YP_001047144.1| - 0.075 13.1 0.1 0.12 12.5 0.1 1.2 1 0 0 1 1 1 0 Stage III sporulation protein D DUF202 PF02656.15 gi|126179179|ref|YP_001047144.1| - 0.082 13.4 2.5 0.25 11.8 2.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF202) GerE PF00196.19 gi|126179179|ref|YP_001047144.1| - 0.088 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_WhiA PF02650.14 gi|126179179|ref|YP_001047144.1| - 0.093 13.1 0.1 0.12 12.7 0.1 1.2 1 0 0 1 1 1 0 WhiA C-terminal HTH domain PaaX PF07848.12 gi|126179179|ref|YP_001047144.1| - 0.11 12.8 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein HxlR PF01638.17 gi|126179179|ref|YP_001047144.1| - 0.17 11.8 0.0 0.25 11.2 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_7 PF02796.15 gi|126179179|ref|YP_001047144.1| - 0.18 11.9 0.0 1.2 9.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Ost5 PF05251.12 gi|126179179|ref|YP_001047144.1| - 0.21 11.9 4.1 3.3 8.0 0.5 2.3 2 0 0 2 2 2 0 Oligosaccharyltransferase subunit 5 Gram_pos_anchor PF00746.21 gi|126179179|ref|YP_001047144.1| - 6.7 6.8 7.1 19 5.3 0.2 2.4 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Methyltransf_11 PF08241.12 gi|126179180|ref|YP_001047145.1| - 8.2e-24 84.1 0.0 1.5e-23 83.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126179180|ref|YP_001047145.1| - 1.7e-20 73.5 0.0 3.2e-20 72.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|126179180|ref|YP_001047145.1| - 4.7e-17 62.1 0.0 2.6e-16 59.7 0.0 1.9 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|126179180|ref|YP_001047145.1| - 1.4e-14 54.2 0.0 2e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126179180|ref|YP_001047145.1| - 3.4e-14 53.4 0.0 7.3e-14 52.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126179180|ref|YP_001047145.1| - 2.7e-13 50.0 0.0 4.5e-13 49.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|126179180|ref|YP_001047145.1| - 2.6e-06 26.9 0.0 1.5e-05 24.4 0.0 1.9 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase AdoMet_MTase PF07757.13 gi|126179180|ref|YP_001047145.1| - 0.0034 17.7 0.1 0.0064 16.8 0.1 1.5 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase DUF1072 PF06380.11 gi|126179180|ref|YP_001047145.1| - 0.011 15.6 0.8 0.02 14.8 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1072) N6_N4_Mtase PF01555.18 gi|126179180|ref|YP_001047145.1| - 0.013 15.2 0.0 0.34 10.6 0.0 2.1 2 0 0 2 2 2 0 DNA methylase Methyltransf_8 PF05148.15 gi|126179180|ref|YP_001047145.1| - 0.024 14.5 0.0 0.05 13.5 0.0 1.6 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_9 PF08003.11 gi|126179180|ref|YP_001047145.1| - 0.042 12.8 0.0 0.062 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) PCMT PF01135.19 gi|126179180|ref|YP_001047145.1| - 0.094 12.4 0.0 0.17 11.6 0.0 1.4 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DNA_pol3_delta2 PF13177.6 gi|126179181|ref|YP_001047146.1| - 5.6e-11 42.5 0.0 1.8e-10 40.8 0.0 1.8 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|126179181|ref|YP_001047146.1| - 6.3e-09 36.1 0.0 1.5e-08 35.0 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|126179181|ref|YP_001047146.1| - 4.2e-08 33.7 0.0 1.9e-07 31.6 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|126179181|ref|YP_001047146.1| - 1.3e-06 28.9 2.8 7.1e-06 26.5 0.0 2.9 2 2 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|126179181|ref|YP_001047146.1| - 0.00034 20.4 0.0 0.00094 19.0 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_assoc_2 PF16193.5 gi|126179181|ref|YP_001047146.1| - 0.00085 19.6 1.4 0.0012 19.1 0.2 1.9 2 0 0 2 2 1 1 AAA C-terminal domain Rad17 PF03215.15 gi|126179181|ref|YP_001047146.1| - 0.00098 19.1 0.0 0.0013 18.7 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_18 PF13238.6 gi|126179181|ref|YP_001047146.1| - 0.0017 18.9 0.0 0.0033 18.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|126179181|ref|YP_001047146.1| - 0.0032 17.0 0.0 0.0054 16.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region PIN PF01850.21 gi|126179181|ref|YP_001047146.1| - 0.0051 17.3 0.4 0.013 16.1 0.4 1.6 1 0 0 1 1 1 1 PIN domain AAA_30 PF13604.6 gi|126179181|ref|YP_001047146.1| - 0.01 15.5 0.1 0.33 10.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|126179181|ref|YP_001047146.1| - 0.011 16.2 0.0 0.019 15.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|126179181|ref|YP_001047146.1| - 0.012 15.6 0.0 0.034 14.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|126179181|ref|YP_001047146.1| - 0.023 15.0 0.8 0.11 12.8 0.1 2.4 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|126179181|ref|YP_001047146.1| - 0.04 14.2 0.0 0.13 12.5 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|126179181|ref|YP_001047146.1| - 0.055 13.2 0.0 0.075 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|126179181|ref|YP_001047146.1| - 0.079 12.3 0.4 0.71 9.2 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_29 PF13555.6 gi|126179181|ref|YP_001047146.1| - 0.17 11.7 0.0 0.35 10.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain TPR_6 PF13174.6 gi|126179181|ref|YP_001047146.1| - 0.29 11.9 2.3 84 4.1 0.2 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|126179181|ref|YP_001047146.1| - 4 8.5 8.1 9.9 7.3 0.6 3.5 2 1 1 3 3 3 0 Tetratricopeptide repeat PPS_PS PF02006.16 gi|126179182|ref|YP_001047147.1| - 1.8e-66 223.0 0.4 2.3e-66 222.7 0.4 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase GHMP_kinases_N PF00288.26 gi|126179183|ref|YP_001047148.1| - 5.3e-13 49.0 0.6 5.3e-13 49.0 0.6 1.7 2 0 0 2 2 2 1 GHMP kinases N terminal domain DFP PF04127.15 gi|126179184|ref|YP_001047149.1| - 2.9e-35 121.8 0.8 2.2e-33 115.7 0.0 2.5 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|126179184|ref|YP_001047149.1| - 1.1e-34 119.5 1.8 8.2e-34 116.6 0.6 2.1 2 0 0 2 2 2 1 Flavoprotein Pyr_redox_2 PF07992.14 gi|126179184|ref|YP_001047149.1| - 0.014 14.6 0.1 0.35 10.0 0.0 2.3 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Dus PF01207.17 gi|126179184|ref|YP_001047149.1| - 0.15 11.1 0.0 0.29 10.2 0.0 1.4 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) Met_10 PF02475.16 gi|126179185|ref|YP_001047150.1| - 1.5e-44 152.1 0.0 2.2e-44 151.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|126179185|ref|YP_001047150.1| - 3e-06 26.9 0.0 4.5e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|126179185|ref|YP_001047150.1| - 0.00041 21.0 0.1 0.0012 19.5 0.1 1.9 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|126179185|ref|YP_001047150.1| - 0.00043 19.8 0.0 0.00071 19.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|126179185|ref|YP_001047150.1| - 0.0012 18.7 0.0 0.0022 18.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|126179185|ref|YP_001047150.1| - 0.002 17.7 0.0 0.0035 16.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|126179185|ref|YP_001047150.1| - 0.03 14.0 0.0 0.05 13.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 CobW_C PF07683.14 gi|126179185|ref|YP_001047150.1| - 0.083 12.8 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Cobalamin synthesis protein cobW C-terminal domain TRM PF02005.16 gi|126179185|ref|YP_001047150.1| - 0.089 11.9 0.0 0.1 11.7 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase ACC_epsilon PF13822.6 gi|126179185|ref|YP_001047150.1| - 0.093 13.4 6.5 0.38 11.5 0.4 3.2 3 0 0 3 3 3 0 Acyl-CoA carboxylase epsilon subunit DNA_methylase PF00145.17 gi|126179185|ref|YP_001047150.1| - 0.12 11.7 0.0 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase tRNA_U5-meth_tr PF05958.11 gi|126179185|ref|YP_001047150.1| - 0.14 11.1 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase NMD3 PF04981.13 gi|126179186|ref|YP_001047151.1| - 3.4e-52 177.3 2.2 4e-52 177.1 2.2 1.1 1 0 0 1 1 1 1 NMD3 family eIF-5a PF01287.20 gi|126179186|ref|YP_001047151.1| - 0.036 14.2 0.5 13 5.9 0.0 3.1 3 0 0 3 3 3 0 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold VPS11_C PF12451.8 gi|126179186|ref|YP_001047151.1| - 0.18 12.1 0.0 0.37 11.1 0.0 1.5 1 0 0 1 1 1 0 Vacuolar protein sorting protein 11 C terminal zf-ribbon_3 PF13248.6 gi|126179186|ref|YP_001047151.1| - 0.21 11.1 7.8 1 8.8 3.0 2.8 2 0 0 2 2 2 0 zinc-ribbon domain PolC_DP2 PF03833.13 gi|126179186|ref|YP_001047151.1| - 0.29 8.9 4.5 0.13 10.1 2.4 1.4 1 1 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-C4pol PF14260.6 gi|126179186|ref|YP_001047151.1| - 2.4 8.7 8.9 13 6.3 0.8 3.2 2 1 1 3 3 3 0 C4-type zinc-finger of DNA polymerase delta RecR PF02132.15 gi|126179186|ref|YP_001047151.1| - 3 7.5 12.8 0.18 11.4 1.6 3.1 3 0 0 3 3 3 0 RecR protein DUF424 PF04242.13 gi|126179187|ref|YP_001047152.1| - 2e-27 95.3 0.0 2.2e-27 95.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) TatD_DNase PF01026.21 gi|126179188|ref|YP_001047153.1| - 2.5e-17 63.1 0.0 4.1e-16 59.1 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase DHNA PF04038.12 gi|126179189|ref|YP_001047154.1| - 3.2e-39 133.8 0.0 3.7e-39 133.6 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase DUF2478 PF10649.9 gi|126179189|ref|YP_001047154.1| - 0.079 12.6 0.0 0.12 11.9 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2478) HicB_lk_antitox PF15919.5 gi|126179190|ref|YP_001047155.1| - 0.0054 16.8 0.0 0.0057 16.8 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF2684 PF10885.8 gi|126179191|ref|YP_001047156.1| - 0.036 14.2 0.6 0.036 14.2 0.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2684) UPF0114 PF03350.16 gi|126179191|ref|YP_001047156.1| - 0.22 11.7 5.8 0.04 14.1 1.7 1.7 1 1 1 2 2 2 0 Uncharacterized protein family, UPF0114 DUF4367 PF14285.6 gi|126179192|ref|YP_001047157.1| - 0.00099 19.5 0.0 0.0017 18.7 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4367) HicB_lk_antitox PF15919.5 gi|126179193|ref|YP_001047158.1| - 5e-14 52.5 0.0 5.4e-14 52.4 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 gi|126179194|ref|YP_001047159.1| - 6.4e-18 64.5 0.7 7.3e-18 64.4 0.7 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, MCM PF00493.23 gi|126179195|ref|YP_001047160.1| - 2.2e-88 295.1 0.0 2.4e-59 200.1 0.0 2.3 2 0 0 2 2 2 2 MCM P-loop domain MCM_OB PF17207.3 gi|126179195|ref|YP_001047160.1| - 3.4e-34 117.4 0.2 6.4e-34 116.5 0.2 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|126179195|ref|YP_001047160.1| - 1.7e-26 92.4 0.2 4.8e-26 91.0 0.2 1.8 1 0 0 1 1 1 1 MCM AAA-lid domain LAGLIDADG_3 PF14528.6 gi|126179195|ref|YP_001047160.1| - 9.4e-11 41.9 0.0 9.1e-05 22.7 0.0 2.6 2 0 0 2 2 2 2 LAGLIDADG-like domain AAA_5 PF07728.14 gi|126179195|ref|YP_001047160.1| - 0.0058 16.6 0.0 0.018 15.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) UPF0515 PF15135.6 gi|126179195|ref|YP_001047160.1| - 0.019 14.3 0.7 0.045 13.1 0.7 1.6 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 DZR PF12773.7 gi|126179195|ref|YP_001047160.1| - 0.055 13.5 1.1 0.14 12.2 1.1 1.6 1 0 0 1 1 1 0 Double zinc ribbon Intein_splicing PF14890.6 gi|126179195|ref|YP_001047160.1| - 0.077 12.9 0.0 0.27 11.2 0.0 1.9 1 1 0 1 1 1 0 Intein splicing domain AAA_16 PF13191.6 gi|126179195|ref|YP_001047160.1| - 0.13 12.7 0.0 0.42 11.0 0.0 1.9 1 0 0 1 1 1 0 AAA ATPase domain Zn-ribbon_8 PF09723.10 gi|126179195|ref|YP_001047160.1| - 0.17 12.0 1.9 0.47 10.6 1.9 1.8 1 0 0 1 1 1 0 Zinc ribbon domain Rep_fac_C PF08542.11 gi|126179196|ref|YP_001047161.1| - 7e-18 64.8 0.0 1.5e-17 63.8 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|126179196|ref|YP_001047161.1| - 3.5e-16 59.8 0.0 3.6e-14 53.3 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|126179196|ref|YP_001047161.1| - 2e-15 57.0 0.0 5.8e-10 39.2 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|126179196|ref|YP_001047161.1| - 1.1e-07 31.7 0.3 2.5e-06 27.3 0.0 2.8 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|126179196|ref|YP_001047161.1| - 1.8e-05 24.8 0.0 2.6e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_assoc_2 PF16193.5 gi|126179196|ref|YP_001047161.1| - 3.2e-05 24.2 0.2 6.6e-05 23.2 0.2 1.6 1 0 0 1 1 1 1 AAA C-terminal domain AAA_16 PF13191.6 gi|126179196|ref|YP_001047161.1| - 8.4e-05 23.0 3.9 0.0045 17.4 0.0 2.8 2 1 1 3 3 3 1 AAA ATPase domain AAA_14 PF13173.6 gi|126179196|ref|YP_001047161.1| - 0.00014 21.9 0.0 0.00033 20.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain DNA_pol3_delta PF06144.13 gi|126179196|ref|YP_001047161.1| - 0.00095 19.0 0.0 0.002 18.0 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_3 PF07726.11 gi|126179196|ref|YP_001047161.1| - 0.002 18.0 0.0 0.0045 16.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|126179196|ref|YP_001047161.1| - 0.0023 17.7 0.0 0.0052 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|126179196|ref|YP_001047161.1| - 0.0039 16.9 0.0 0.0081 15.9 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|126179196|ref|YP_001047161.1| - 0.005 16.3 0.0 2.7 7.3 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI TIP49 PF06068.13 gi|126179196|ref|YP_001047161.1| - 0.0058 15.9 0.0 0.044 13.0 0.0 2.1 1 1 1 2 2 2 1 TIP49 P-loop domain MeaB PF03308.16 gi|126179196|ref|YP_001047161.1| - 0.0071 15.4 0.1 0.33 9.9 0.0 2.2 1 1 1 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Sigma54_activat PF00158.26 gi|126179196|ref|YP_001047161.1| - 0.011 15.5 0.0 7.1 6.3 0.0 2.7 3 0 0 3 3 3 0 Sigma-54 interaction domain AAA_25 PF13481.6 gi|126179196|ref|YP_001047161.1| - 0.012 15.2 0.2 0.034 13.7 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|126179196|ref|YP_001047161.1| - 0.015 15.3 0.0 0.031 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|126179196|ref|YP_001047161.1| - 0.015 15.5 1.1 3.2 8.0 0.1 2.6 2 1 1 3 3 3 0 AAA domain Sigma54_activ_2 PF14532.6 gi|126179196|ref|YP_001047161.1| - 0.024 14.7 0.0 0.051 13.7 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain Viral_helicase1 PF01443.18 gi|126179196|ref|YP_001047161.1| - 0.047 13.4 0.0 0.072 12.8 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.6 gi|126179196|ref|YP_001047161.1| - 0.062 13.8 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain PAS_11 PF14598.6 gi|126179196|ref|YP_001047161.1| - 0.12 12.5 0.0 0.58 10.3 0.0 2.1 2 1 0 2 2 2 0 PAS domain AAA_7 PF12775.7 gi|126179196|ref|YP_001047161.1| - 0.16 11.5 0.0 0.3 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region VirE PF05272.11 gi|126179196|ref|YP_001047161.1| - 0.18 11.5 0.1 1.9 8.2 0.1 2.3 2 1 0 2 2 2 0 Virulence-associated protein E tRNA_anti-codon PF01336.25 gi|126179197|ref|YP_001047162.1| - 0.11 12.5 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain SIC PF03482.13 gi|126179197|ref|YP_001047162.1| - 0.11 12.7 0.8 8 6.7 0.0 2.5 2 0 0 2 2 2 0 sic protein repeat Metallophos PF00149.28 gi|126179198|ref|YP_001047163.1| - 6e-09 36.7 0.6 6e-09 36.7 0.6 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|126179198|ref|YP_001047163.1| - 1.5e-05 25.3 4.4 2.7e-05 24.4 4.4 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DEAD PF00270.29 gi|126179199|ref|YP_001047164.1| - 1.3e-32 113.0 0.0 2.1e-32 112.3 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|126179199|ref|YP_001047164.1| - 3.1e-30 105.4 0.1 5.6e-30 104.6 0.1 1.4 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.31 gi|126179199|ref|YP_001047164.1| - 3.4e-21 75.7 0.0 2.5e-18 66.5 0.0 2.6 2 0 0 2 2 2 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|126179199|ref|YP_001047164.1| - 2.5e-09 37.4 0.0 4.1e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|126179199|ref|YP_001047164.1| - 0.0063 15.3 0.0 0.011 14.4 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_25 PF13481.6 gi|126179199|ref|YP_001047164.1| - 0.022 14.4 0.0 0.051 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|126179199|ref|YP_001047164.1| - 0.045 13.5 0.0 0.17 11.6 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|126179199|ref|YP_001047164.1| - 0.054 13.8 0.0 0.21 11.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|126179199|ref|YP_001047164.1| - 0.12 12.7 0.0 0.52 10.7 0.0 2.1 1 1 0 1 1 1 0 AAA domain TBP PF00352.21 gi|126179200|ref|YP_001047165.1| - 7.2e-49 163.7 0.1 3.8e-25 87.7 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|126179200|ref|YP_001047165.1| - 4.3e-06 26.7 0.0 0.023 14.8 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) AMP-binding PF00501.28 gi|126179201|ref|YP_001047166.1| - 1.2e-82 277.8 0.0 1.4e-82 277.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|126179201|ref|YP_001047166.1| - 7.3e-23 81.3 0.5 1.5e-22 80.3 0.5 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain TrmO PF01980.16 gi|126179202|ref|YP_001047167.1| - 1e-28 99.9 0.0 1.2e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O DUF2795 PF11387.8 gi|126179203|ref|YP_001047168.1| - 1e-16 60.8 0.0 1.6e-16 60.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2795) RRM_1 PF00076.22 gi|126179204|ref|YP_001047169.1| - 2.3e-23 81.8 0.1 2.7e-23 81.6 0.1 1.1 1 0 0 1 1 1 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_5 PF13893.6 gi|126179204|ref|YP_001047169.1| - 4e-06 26.4 0.0 4.3e-06 26.3 0.0 1.0 1 0 0 1 1 1 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_occluded PF16842.5 gi|126179204|ref|YP_001047169.1| - 0.00022 21.0 0.0 0.00024 20.9 0.0 1.0 1 0 0 1 1 1 1 Occluded RNA-recognition motif RRM_3 PF08777.11 gi|126179204|ref|YP_001047169.1| - 0.002 18.2 0.0 0.0023 18.0 0.0 1.1 1 0 0 1 1 1 1 RNA binding motif RRM_7 PF16367.5 gi|126179204|ref|YP_001047169.1| - 0.011 15.8 0.0 0.019 15.1 0.0 1.6 1 1 0 1 1 1 0 RNA recognition motif Calcipressin PF04847.12 gi|126179204|ref|YP_001047169.1| - 0.027 14.2 0.0 0.032 14.0 0.0 1.1 1 0 0 1 1 1 0 Calcipressin EF-G-binding_N PF07299.11 gi|126179204|ref|YP_001047169.1| - 0.14 12.7 0.0 0.64 10.6 0.0 1.8 2 0 0 2 2 2 0 Elongation factor G-binding protein, N-terminal dsDNA_bind PF01984.20 gi|126179204|ref|YP_001047169.1| - 0.18 12.1 0.0 1.8 8.9 0.0 1.9 1 1 1 2 2 2 0 Double-stranded DNA-binding domain eIF-1a PF01176.19 gi|126179205|ref|YP_001047170.1| - 4.1e-18 64.9 0.5 5.1e-18 64.6 0.5 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF2121 PF09894.9 gi|126179206|ref|YP_001047171.1| - 4.1e-67 225.6 1.3 4.7e-67 225.3 1.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2121) LAMTOR5 PF16672.5 gi|126179207|ref|YP_001047172.1| - 0.13 12.2 0.0 0.43 10.6 0.0 1.8 2 0 0 2 2 2 0 Ragulator complex protein LAMTOR5 DUF3417 PF11897.8 gi|126179209|ref|YP_001047174.1| - 8.7e-38 129.1 0.6 2e-37 128.0 0.2 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF3417) Phosphorylase PF00343.20 gi|126179209|ref|YP_001047174.1| - 1.1e-27 96.6 0.0 8.9e-21 73.9 0.0 3.7 2 1 1 3 3 3 2 Carbohydrate phosphorylase Capsule_synth PF05159.14 gi|126179209|ref|YP_001047174.1| - 0.087 12.3 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Capsule polysaccharide biosynthesis protein Glyco_hydro_77 PF02446.17 gi|126179210|ref|YP_001047175.1| - 5.1e-160 533.3 0.0 6.3e-160 533.1 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase DUF3536 PF12055.8 gi|126179211|ref|YP_001047176.1| - 3.2e-62 210.4 0.0 4.5e-62 209.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3536) Glyco_hydro_57 PF03065.15 gi|126179211|ref|YP_001047176.1| - 2.3e-18 66.5 0.0 3.4e-18 65.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF5549 PF17703.1 gi|126179211|ref|YP_001047176.1| - 0.36 10.5 2.8 10 5.7 0.0 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5549) Alpha-amylase_C PF02806.18 gi|126179212|ref|YP_001047177.1| - 9.6e-25 86.9 0.0 1.8e-24 86.0 0.0 1.5 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain CBM_48 PF02922.18 gi|126179212|ref|YP_001047177.1| - 4.7e-20 71.7 0.1 2.2e-19 69.6 0.0 2.2 3 0 0 3 3 3 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase PF00128.24 gi|126179212|ref|YP_001047177.1| - 2.3e-12 47.2 0.2 2e-08 34.2 0.1 2.4 3 0 0 3 3 3 2 Alpha amylase, catalytic domain Glyco_hydro_70 PF02324.16 gi|126179212|ref|YP_001047177.1| - 0.0022 16.3 0.0 0.0037 15.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 70 BPS PF08947.10 gi|126179212|ref|YP_001047177.1| - 3.4 7.6 4.4 21 5.1 0.2 2.7 3 0 0 3 3 3 0 BPS (Between PH and SH2) Glycos_transf_1 PF00534.20 gi|126179213|ref|YP_001047178.1| - 1.6e-26 92.9 0.0 2.3e-26 92.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126179213|ref|YP_001047178.1| - 7.8e-26 91.1 0.6 1.3e-25 90.4 0.6 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|126179213|ref|YP_001047178.1| - 1.3e-24 87.1 0.0 2.1e-24 86.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|126179213|ref|YP_001047178.1| - 1.8e-15 57.3 1.1 1.3e-08 34.9 0.3 2.3 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 gi|126179213|ref|YP_001047178.1| - 2.3e-15 57.4 0.0 5.6e-15 56.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|126179213|ref|YP_001047178.1| - 6e-05 23.4 0.0 0.00011 22.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_hydro_57 PF03065.15 gi|126179214|ref|YP_001047179.1| - 1.3e-29 103.4 0.0 3.7e-29 102.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl hydrolase family 57 YhcG_C PF06250.11 gi|126179215|ref|YP_001047180.1| - 1.6e-60 203.4 4.8 2.8e-60 202.6 4.8 1.4 1 0 0 1 1 1 1 YhcG PDDEXK nuclease domain DUF1016_N PF17761.1 gi|126179215|ref|YP_001047180.1| - 5e-44 149.8 0.7 8.5e-44 149.1 0.7 1.4 1 0 0 1 1 1 1 DUF1016 N-terminal domain HTH_ParB PF17762.1 gi|126179215|ref|YP_001047180.1| - 0.00048 19.9 0.0 0.0012 18.6 0.0 1.6 1 0 0 1 1 1 1 HTH domain found in ParB protein A-2_8-polyST PF07388.11 gi|126179215|ref|YP_001047180.1| - 0.0049 15.5 0.1 0.0088 14.7 0.0 1.4 1 1 0 1 1 1 1 Alpha-2,8-polysialyltransferase (POLYST) NucS PF01939.16 gi|126179215|ref|YP_001047180.1| - 0.0061 15.9 0.2 0.013 14.8 0.1 1.4 1 1 0 1 1 1 1 Endonuclease NucS HSDR_N_2 PF13588.6 gi|126179215|ref|YP_001047180.1| - 0.0095 15.9 0.1 0.021 14.8 0.1 1.6 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) POTRA PF07244.15 gi|126179215|ref|YP_001047180.1| - 0.039 14.5 0.3 0.16 12.6 0.3 2.0 1 0 0 1 1 1 0 Surface antigen variable number repeat GreA_GreB_N PF03449.15 gi|126179215|ref|YP_001047180.1| - 0.096 12.9 0.1 0.096 12.9 0.1 2.7 3 0 0 3 3 3 0 Transcription elongation factor, N-terminal OKR_DC_1 PF01276.20 gi|126179216|ref|YP_001047181.1| - 3e-160 533.6 0.0 3.6e-160 533.3 0.0 1.1 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain OKR_DC_1_C PF03711.15 gi|126179216|ref|YP_001047181.1| - 8.2e-46 155.6 0.0 1.5e-45 154.7 0.0 1.4 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, C-terminal domain OKR_DC_1_N PF03709.15 gi|126179216|ref|YP_001047181.1| - 1.9e-26 92.5 0.0 3.8e-26 91.5 0.0 1.6 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain Beta_elim_lyase PF01212.21 gi|126179216|ref|YP_001047181.1| - 0.013 14.9 0.0 0.038 13.3 0.0 1.7 2 0 0 2 2 2 0 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|126179216|ref|YP_001047181.1| - 0.056 12.7 0.1 0.093 12.0 0.1 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family HTH_24 PF13412.6 gi|126179219|ref|YP_001047184.1| - 4.8e-20 70.9 0.1 1e-09 37.8 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|126179219|ref|YP_001047184.1| - 3.1e-07 30.3 0.0 0.0042 17.1 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain MarR PF01047.22 gi|126179219|ref|YP_001047184.1| - 1e-05 25.4 0.0 0.057 13.3 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.20 gi|126179219|ref|YP_001047184.1| - 0.00015 21.5 0.0 0.77 9.7 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|126179219|ref|YP_001047184.1| - 0.0014 18.5 0.0 0.052 13.4 0.0 2.2 2 0 0 2 2 2 1 MarR family RPA_C PF08784.11 gi|126179219|ref|YP_001047184.1| - 0.0077 16.9 0.0 5.2 7.8 0.0 2.2 2 0 0 2 2 2 2 Replication protein A C terminal RP-C PF03428.13 gi|126179219|ref|YP_001047184.1| - 0.034 13.8 0.0 0.099 12.3 0.0 1.6 2 0 0 2 2 2 0 Replication protein C N-terminal domain B-block_TFIIIC PF04182.12 gi|126179219|ref|YP_001047184.1| - 0.1 12.8 0.0 0.51 10.5 0.0 2.0 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|126179219|ref|YP_001047184.1| - 0.15 11.9 0.0 0.48 10.3 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Peptidase_S8 PF00082.22 gi|126179221|ref|YP_001047186.1| - 5.2e-23 81.7 3.0 6.5e-23 81.4 3.0 1.2 1 0 0 1 1 1 1 Subtilase family PCDO_beta_N PF12391.8 gi|126179221|ref|YP_001047186.1| - 0.72 9.5 3.4 1.3 8.7 3.4 1.4 1 0 0 1 1 1 0 Protocatechuate 3,4-dioxygenase beta subunit N terminal DUF2517 PF10725.9 gi|126179223|ref|YP_001047188.1| - 0.37 10.6 1.5 0.55 10.0 0.1 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF2517) DsbD PF02683.15 gi|126179224|ref|YP_001047189.1| - 4.2e-22 79.1 22.5 5.1e-22 78.8 22.5 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|126179224|ref|YP_001047189.1| - 5.1e-12 46.1 23.7 6.4e-12 45.8 23.7 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.6 gi|126179224|ref|YP_001047189.1| - 0.0079 16.2 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Transglut_core PF01841.19 gi|126179227|ref|YP_001047192.1| - 3.9e-09 37.0 0.0 5.6e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily PGF-CTERM PF18204.1 gi|126179228|ref|YP_001047193.1| - 0.00033 20.5 0.2 0.00033 20.5 0.2 2.1 2 0 0 2 2 2 1 PGF-CTERM motif Fer4_20 PF14691.6 gi|126179229|ref|YP_001047194.1| - 9.1e-43 144.6 2.9 1.4e-42 144.0 2.9 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 gi|126179229|ref|YP_001047194.1| - 1.4e-40 139.3 1.7 2.2e-40 138.7 1.7 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|126179229|ref|YP_001047194.1| - 2.1e-12 47.4 7.5 1.2e-08 35.4 0.1 2.8 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|126179229|ref|YP_001047194.1| - 3.2e-11 43.0 0.0 1.8e-05 24.2 0.0 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|126179229|ref|YP_001047194.1| - 8e-09 35.1 3.4 1.4e-05 24.5 0.2 2.4 2 1 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|126179229|ref|YP_001047194.1| - 9.8e-09 35.3 4.0 1.3e-08 34.9 0.2 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|126179229|ref|YP_001047194.1| - 2.6e-08 34.2 0.5 0.0035 17.8 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|126179229|ref|YP_001047194.1| - 4.2e-07 29.5 3.6 3.8e-05 23.1 0.2 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|126179229|ref|YP_001047194.1| - 9.8e-07 28.5 7.6 1.3e-05 24.8 0.7 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|126179229|ref|YP_001047194.1| - 3.4e-06 26.4 1.3 0.00088 18.5 0.4 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|126179229|ref|YP_001047194.1| - 4.8e-06 25.9 0.7 4.8e-06 25.9 0.7 2.9 2 1 0 3 3 3 1 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|126179229|ref|YP_001047194.1| - 7.7e-06 25.4 0.0 0.018 14.4 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|126179229|ref|YP_001047194.1| - 2.9e-05 23.4 0.2 8.9e-05 21.8 0.0 1.8 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|126179229|ref|YP_001047194.1| - 6.3e-05 21.8 4.7 0.00011 21.0 0.6 2.1 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.24 gi|126179229|ref|YP_001047194.1| - 0.00013 21.7 7.7 0.0011 18.6 2.9 3.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase PALP PF00291.25 gi|126179229|ref|YP_001047194.1| - 0.00019 20.9 1.0 0.61 9.4 0.1 2.5 2 1 1 3 3 3 3 Pyridoxal-phosphate dependent enzyme 3HCDH_N PF02737.18 gi|126179229|ref|YP_001047194.1| - 0.00019 21.3 0.7 0.16 11.8 0.1 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 gi|126179229|ref|YP_001047194.1| - 0.00049 19.5 0.9 0.00049 19.5 0.9 1.8 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase FMO-like PF00743.19 gi|126179229|ref|YP_001047194.1| - 0.0012 17.4 0.0 0.15 10.5 0.0 2.1 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like XdhC_C PF13478.6 gi|126179229|ref|YP_001047194.1| - 0.002 18.6 0.9 0.13 12.7 0.0 3.1 3 0 0 3 3 3 1 XdhC Rossmann domain ELFV_dehydrog PF00208.21 gi|126179229|ref|YP_001047194.1| - 0.0021 17.8 0.1 0.41 10.3 0.0 2.3 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase F420_oxidored PF03807.17 gi|126179229|ref|YP_001047194.1| - 0.0071 16.9 2.2 3.7 8.2 0.1 3.1 3 0 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|126179229|ref|YP_001047194.1| - 0.011 15.3 0.1 5.8 6.5 0.0 2.5 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_9 PF13454.6 gi|126179229|ref|YP_001047194.1| - 0.035 14.1 1.4 0.19 11.7 0.4 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding YjeF_N PF03853.15 gi|126179229|ref|YP_001047194.1| - 0.04 13.8 1.1 2.5 7.9 0.0 2.7 3 0 0 3 3 2 0 YjeF-related protein N-terminus Fer4_7 PF12838.7 gi|126179229|ref|YP_001047194.1| - 0.054 14.1 1.6 0.054 14.1 1.6 2.7 2 1 0 2 2 2 0 4Fe-4S dicluster domain ApbA PF02558.16 gi|126179229|ref|YP_001047194.1| - 0.091 12.4 1.7 0.15 11.7 0.7 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA K_oxygenase PF13434.6 gi|126179229|ref|YP_001047194.1| - 0.096 11.8 0.0 16 4.5 0.0 2.9 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) UDPG_MGDP_dh_N PF03721.14 gi|126179229|ref|YP_001047194.1| - 0.12 12.0 0.2 0.56 9.8 0.0 2.1 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.12 gi|126179229|ref|YP_001047194.1| - 0.16 10.9 2.2 0.12 11.4 0.4 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|126179229|ref|YP_001047194.1| - 0.34 9.7 4.4 0.068 12.0 0.7 1.6 2 0 0 2 2 2 0 Tryptophan halogenase MCRA PF06100.11 gi|126179229|ref|YP_001047194.1| - 0.38 9.5 0.3 0.52 9.0 0.3 1.1 1 0 0 1 1 1 0 MCRA family AdoHcyase_NAD PF00670.21 gi|126179229|ref|YP_001047194.1| - 1.7 8.7 4.3 26 4.8 0.1 3.1 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Fer4_18 PF13746.6 gi|126179229|ref|YP_001047194.1| - 7.1 6.9 8.9 0.44 10.8 0.8 2.5 3 0 0 3 3 2 0 4Fe-4S dicluster domain DHODB_Fe-S_bind PF10418.9 gi|126179230|ref|YP_001047195.1| - 1.3e-13 50.5 2.1 1.3e-13 50.5 2.1 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|126179230|ref|YP_001047195.1| - 0.02 15.5 0.0 0.048 14.3 0.0 1.7 1 1 0 1 1 1 0 Oxidoreductase NAD-binding domain Fer2_3 PF13085.6 gi|126179230|ref|YP_001047195.1| - 0.037 14.0 0.1 0.073 13.1 0.1 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain UPF0669 PF17065.5 gi|126179230|ref|YP_001047195.1| - 0.14 11.9 0.0 0.33 10.7 0.0 1.6 1 0 0 1 1 1 0 Putative cytokine, C6ORF120 DUF3185 PF11381.8 gi|126179231|ref|YP_001047196.1| - 0.056 13.5 8.9 0.55 10.3 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) DUF3040 PF11239.8 gi|126179231|ref|YP_001047196.1| - 1.7 8.9 5.1 2.4 8.5 5.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF3188 PF11384.8 gi|126179231|ref|YP_001047196.1| - 9.7 6.0 10.2 2.8 7.7 2.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3188) YbjQ_1 PF01906.17 gi|126179232|ref|YP_001047197.1| - 5.7e-38 129.7 4.1 6.4e-38 129.6 4.1 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.8 gi|126179232|ref|YP_001047197.1| - 0.00034 21.0 0.5 0.88 10.1 0.1 2.1 1 1 0 2 2 2 2 Selenium binding protein DUF4156 PF13698.6 gi|126179232|ref|YP_001047197.1| - 0.045 14.1 0.6 0.074 13.4 0.3 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4156) Fe_hyd_lg_C PF02906.14 gi|126179232|ref|YP_001047197.1| - 0.13 12.0 0.1 0.16 11.6 0.1 1.2 1 0 0 1 1 1 0 Iron only hydrogenase large subunit, C-terminal domain DUF5591 PF17884.1 gi|126179233|ref|YP_001047198.1| - 1.9e-56 190.2 0.0 2.8e-56 189.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PUA PF01472.20 gi|126179233|ref|YP_001047198.1| - 3.4e-11 43.0 0.1 8.5e-11 41.7 0.1 1.7 1 0 0 1 1 1 1 PUA domain TGT PF01702.18 gi|126179233|ref|YP_001047198.1| - 0.049 12.8 0.1 3.6 6.6 0.0 2.2 2 0 0 2 2 2 0 Queuine tRNA-ribosyltransferase TGT PF01702.18 gi|126179234|ref|YP_001047199.1| - 6.9e-76 255.7 0.0 8.9e-76 255.3 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase AMMECR1 PF01871.17 gi|126179235|ref|YP_001047200.1| - 2e-51 173.9 0.0 2.2e-51 173.7 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Arch_flagellin PF01917.16 gi|126179236|ref|YP_001047201.1| - 8.7e-05 22.8 0.6 0.0013 18.9 0.0 2.0 2 0 0 2 2 2 1 Archaebacterial flagellin Phage_Coat_B PF05356.11 gi|126179236|ref|YP_001047201.1| - 0.081 12.8 0.2 0.17 11.8 0.2 1.6 1 1 0 1 1 1 0 Phage Coat protein B Lon_2 PF13337.6 gi|126179237|ref|YP_001047202.1| - 0.0022 16.6 0.3 0.0067 15.0 0.1 1.7 1 1 1 2 2 2 1 Putative ATP-dependent Lon protease SMODS PF18144.1 gi|126179237|ref|YP_001047202.1| - 0.032 14.4 0.1 0.038 14.2 0.1 1.2 1 0 0 1 1 1 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain DUF1297 PF06973.12 gi|126179237|ref|YP_001047202.1| - 0.075 12.6 0.0 0.085 12.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1297) CBS PF00571.28 gi|126179238|ref|YP_001047203.1| - 1.8e-21 76.3 3.3 1.9e-10 41.0 0.1 2.7 3 0 0 3 3 3 2 CBS domain HTH_3 PF01381.22 gi|126179238|ref|YP_001047203.1| - 6.7e-13 48.5 0.1 1.2e-12 47.6 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|126179238|ref|YP_001047203.1| - 5.3e-11 42.7 0.4 9.3e-11 41.9 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|126179238|ref|YP_001047203.1| - 1.6e-05 24.8 0.0 3.5e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|126179238|ref|YP_001047203.1| - 9.5e-05 22.2 0.1 0.00018 21.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|126179238|ref|YP_001047203.1| - 0.00025 21.4 0.0 0.00049 20.5 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 gi|126179238|ref|YP_001047203.1| - 0.0073 16.2 0.1 0.018 15.0 0.1 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain Pou PF00157.17 gi|126179238|ref|YP_001047203.1| - 0.015 15.2 0.0 0.047 13.7 0.0 1.8 1 1 0 1 1 1 0 Pou domain - N-terminal to homeobox domain MqsA_antitoxin PF15731.5 gi|126179238|ref|YP_001047203.1| - 0.071 13.2 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_Crp_2 PF13545.6 gi|126179238|ref|YP_001047203.1| - 0.1 12.6 0.1 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|126179238|ref|YP_001047203.1| - 0.11 12.3 0.0 0.32 10.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain LacI PF00356.21 gi|126179238|ref|YP_001047203.1| - 0.94 9.3 6.5 1.2 9.0 0.8 3.3 3 1 1 4 4 4 0 Bacterial regulatory proteins, lacI family TIM PF00121.18 gi|126179239|ref|YP_001047204.1| - 1.2e-10 41.1 0.0 1.5e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.14 gi|126179239|ref|YP_001047204.1| - 0.00096 18.5 0.4 0.0018 17.6 0.4 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|126179239|ref|YP_001047204.1| - 0.16 11.1 0.0 0.26 10.4 0.0 1.3 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase Peptidase_U32 PF01136.19 gi|126179240|ref|YP_001047205.1| - 7.6e-110 365.6 0.0 2.1e-79 266.0 0.0 2.9 2 1 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.8 gi|126179240|ref|YP_001047205.1| - 7.1e-21 74.9 0.0 1.2e-20 74.2 0.0 1.4 1 0 0 1 1 1 1 Collagenase F420_oxidored PF03807.17 gi|126179241|ref|YP_001047206.1| - 6.5e-17 61.9 0.0 1.5e-16 60.7 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent P5CR_dimer PF14748.6 gi|126179241|ref|YP_001047206.1| - 2.8e-14 53.2 3.2 5.6e-14 52.3 3.2 1.5 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation NAD_binding_2 PF03446.15 gi|126179241|ref|YP_001047206.1| - 1.9e-08 34.7 0.0 3.5e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|126179241|ref|YP_001047206.1| - 0.015 15.0 0.5 0.075 12.7 0.4 2.0 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|126179241|ref|YP_001047206.1| - 0.019 15.2 0.0 0.034 14.4 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain PDH PF02153.17 gi|126179241|ref|YP_001047206.1| - 0.019 14.0 0.0 0.028 13.4 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase Biotin_carb_N PF00289.22 gi|126179241|ref|YP_001047206.1| - 0.044 14.3 0.0 0.1 13.2 0.0 1.6 1 0 0 1 1 1 0 Biotin carboxylase, N-terminal domain DHquinase_I PF01487.15 gi|126179242|ref|YP_001047207.1| - 7.4e-32 111.4 0.0 8.7e-32 111.2 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Chorismate_synt PF01264.21 gi|126179243|ref|YP_001047208.1| - 6.5e-133 442.5 0.3 8.6e-133 442.1 0.3 1.2 1 0 0 1 1 1 1 Chorismate synthase SKI PF01202.22 gi|126179244|ref|YP_001047209.1| - 9.1e-39 133.1 0.0 1.7e-38 132.2 0.0 1.4 1 0 0 1 1 1 1 Shikimate kinase Shikimate_dh_N PF08501.11 gi|126179244|ref|YP_001047209.1| - 2.3e-24 85.4 0.0 4.1e-24 84.6 0.0 1.4 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|126179244|ref|YP_001047209.1| - 1.3e-06 28.0 0.2 6.2e-06 25.9 0.2 2.2 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Cytidylate_kin2 PF13189.6 gi|126179244|ref|YP_001047209.1| - 0.0026 17.9 0.0 0.0047 17.1 0.0 1.5 1 0 0 1 1 1 1 Cytidylate kinase-like family 2-Hacid_dh_C PF02826.19 gi|126179244|ref|YP_001047209.1| - 0.0038 16.6 0.0 0.0086 15.5 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AAA_18 PF13238.6 gi|126179244|ref|YP_001047209.1| - 0.009 16.6 0.0 0.071 13.7 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|126179244|ref|YP_001047209.1| - 0.06 13.8 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Cytidylate_kin PF02224.18 gi|126179244|ref|YP_001047209.1| - 0.071 12.8 0.0 0.17 11.6 0.0 1.6 2 0 0 2 2 2 0 Cytidylate kinase EPSP_synthase PF00275.20 gi|126179245|ref|YP_001047210.1| - 9.4e-112 373.7 0.0 1.1e-111 373.6 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PDT PF00800.18 gi|126179246|ref|YP_001047211.1| - 8e-38 130.1 0.0 9.7e-38 129.8 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|126179246|ref|YP_001047211.1| - 1.6e-11 43.7 0.0 5.4e-11 42.1 0.0 1.8 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|126179246|ref|YP_001047211.1| - 0.0068 17.0 0.0 0.015 15.9 0.0 1.6 1 0 0 1 1 1 1 ACT domain PDH PF02153.17 gi|126179247|ref|YP_001047212.1| - 3.8e-41 140.8 0.0 4.8e-41 140.5 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|126179247|ref|YP_001047212.1| - 0.00042 20.8 5.1 0.2 12.3 5.1 2.7 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|126179247|ref|YP_001047212.1| - 0.0021 18.3 1.1 0.046 13.9 1.1 2.4 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|126179247|ref|YP_001047212.1| - 0.017 15.0 0.7 1.3 8.9 0.7 2.5 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain B12-binding PF02310.19 gi|126179247|ref|YP_001047212.1| - 0.036 14.1 0.2 0.24 11.4 0.1 2.3 2 1 1 3 3 3 0 B12 binding domain ApbA PF02558.16 gi|126179247|ref|YP_001047212.1| - 0.059 13.0 0.6 3.9 7.1 0.0 2.4 1 1 1 2 2 2 0 Ketopantoate reductase PanE/ApbA HrpB1_HrpK PF09613.10 gi|126179247|ref|YP_001047212.1| - 0.089 12.4 0.0 6.7 6.4 0.0 2.3 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB1_HrpK) DUF1367 PF07105.11 gi|126179247|ref|YP_001047212.1| - 0.12 12.1 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1367) DHQS PF01959.16 gi|126179248|ref|YP_001047213.1| - 1.2e-124 415.8 0.4 1.4e-124 415.6 0.4 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II Hint PF01079.20 gi|126179248|ref|YP_001047213.1| - 0.052 13.0 0.0 4.3 6.8 0.0 2.4 2 0 0 2 2 2 0 Hint module SH3_14 PF18343.1 gi|126179248|ref|YP_001047213.1| - 0.2 11.8 0.0 0.52 10.4 0.0 1.7 1 0 0 1 1 1 0 Dda helicase SH3 domain DeoC PF01791.9 gi|126179249|ref|YP_001047214.1| - 2.2e-54 184.6 0.0 2.5e-54 184.4 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PEP_mutase PF13714.6 gi|126179249|ref|YP_001047214.1| - 0.00055 19.5 1.0 0.016 14.7 0.1 2.6 1 1 3 4 4 4 1 Phosphoenolpyruvate phosphomutase His_biosynth PF00977.21 gi|126179249|ref|YP_001047214.1| - 0.0038 16.7 0.1 0.071 12.6 0.0 2.2 2 0 0 2 2 2 1 Histidine biosynthesis protein TMP-TENI PF02581.17 gi|126179249|ref|YP_001047214.1| - 0.016 14.5 0.0 5.7 6.2 0.1 2.4 2 0 0 2 2 2 0 Thiamine monophosphate synthase Dus PF01207.17 gi|126179249|ref|YP_001047214.1| - 0.024 13.7 1.1 4.3 6.3 0.0 3.0 3 0 0 3 3 3 0 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|126179249|ref|YP_001047214.1| - 0.11 11.9 1.8 0.72 9.2 0.2 2.2 2 0 0 2 2 2 0 Nitronate monooxygenase DeoC PF01791.9 gi|126179250|ref|YP_001047215.1| - 6.1e-54 183.1 0.1 7e-54 182.9 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PEP_mutase PF13714.6 gi|126179250|ref|YP_001047215.1| - 0.038 13.4 0.5 1.3 8.4 0.1 2.2 1 1 0 2 2 2 0 Phosphoenolpyruvate phosphomutase PucR PF07905.11 gi|126179250|ref|YP_001047215.1| - 0.043 14.1 0.0 0.41 10.9 0.0 2.1 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family HTH_3 PF01381.22 gi|126179251|ref|YP_001047216.1| - 0.0012 18.8 0.3 0.0018 18.3 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|126179251|ref|YP_001047216.1| - 0.0019 18.1 0.8 0.0029 17.6 0.8 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|126179251|ref|YP_001047216.1| - 0.005 16.7 1.1 0.0074 16.1 1.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|126179251|ref|YP_001047216.1| - 0.039 14.3 0.0 0.085 13.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_32 PF13565.6 gi|126179251|ref|YP_001047216.1| - 0.43 11.2 3.4 1.4 9.6 3.4 1.9 1 1 0 1 1 1 0 Homeodomain-like domain AAA PF00004.29 gi|126179252|ref|YP_001047217.1| - 3.2e-44 150.6 0.1 1.1e-43 148.9 0.0 1.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|126179252|ref|YP_001047217.1| - 1.1e-11 44.4 0.2 2.2e-11 43.4 0.2 1.5 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|126179252|ref|YP_001047217.1| - 2.9e-09 36.7 0.4 6.4e-09 35.6 0.1 1.8 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain AAA_16 PF13191.6 gi|126179252|ref|YP_001047217.1| - 4.1e-07 30.5 2.9 3.6e-05 24.2 0.1 2.6 2 1 1 3 3 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|126179252|ref|YP_001047217.1| - 4.9e-07 29.8 0.1 2e-06 27.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|126179252|ref|YP_001047217.1| - 1e-06 29.0 0.0 2.3e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|126179252|ref|YP_001047217.1| - 4.9e-06 26.9 2.1 0.002 18.4 0.0 3.1 2 1 1 3 3 3 1 AAA domain RuvB_N PF05496.12 gi|126179252|ref|YP_001047217.1| - 8.1e-06 25.7 0.0 2.4e-05 24.1 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain DUF815 PF05673.13 gi|126179252|ref|YP_001047217.1| - 0.00015 21.1 0.0 0.00024 20.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TIP49 PF06068.13 gi|126179252|ref|YP_001047217.1| - 0.001 18.4 0.0 0.0017 17.6 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_18 PF13238.6 gi|126179252|ref|YP_001047217.1| - 0.0014 19.2 0.1 0.0037 17.8 0.0 1.8 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.17 gi|126179252|ref|YP_001047217.1| - 0.0014 18.4 0.0 0.0028 17.4 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_11 PF13086.6 gi|126179252|ref|YP_001047217.1| - 0.0019 18.0 0.4 0.099 12.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain Prot_ATP_OB_N PF17758.1 gi|126179252|ref|YP_001047217.1| - 0.0021 17.7 0.1 0.0046 16.6 0.1 1.6 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain ATPase PF06745.13 gi|126179252|ref|YP_001047217.1| - 0.0023 17.3 0.6 0.2 11.0 0.0 3.0 3 0 0 3 3 3 1 KaiC AAA_28 PF13521.6 gi|126179252|ref|YP_001047217.1| - 0.0049 17.1 1.2 0.0067 16.7 0.0 2.0 2 1 0 2 2 1 1 AAA domain AAA_14 PF13173.6 gi|126179252|ref|YP_001047217.1| - 0.0054 16.8 0.1 0.014 15.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.6 gi|126179252|ref|YP_001047217.1| - 0.0054 16.9 0.0 0.012 15.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|126179252|ref|YP_001047217.1| - 0.011 15.1 0.0 0.021 14.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|126179252|ref|YP_001047217.1| - 0.014 15.2 0.0 0.029 14.2 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|126179252|ref|YP_001047217.1| - 0.015 15.0 0.2 0.11 12.1 0.0 2.3 2 1 0 2 2 2 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|126179252|ref|YP_001047217.1| - 0.021 15.2 0.0 0.038 14.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.6 gi|126179252|ref|YP_001047217.1| - 0.029 13.9 0.5 0.3 10.6 0.1 2.4 1 1 1 2 2 2 0 AAA domain ZapB PF06005.12 gi|126179252|ref|YP_001047217.1| - 0.031 14.7 7.2 0.14 12.6 6.3 2.3 2 0 0 2 2 2 0 Cell division protein ZapB Leu_zip PF15294.6 gi|126179252|ref|YP_001047217.1| - 0.032 13.8 0.3 0.05 13.1 0.3 1.3 1 0 0 1 1 1 0 Leucine zipper NACHT PF05729.12 gi|126179252|ref|YP_001047217.1| - 0.033 14.1 0.1 0.48 10.3 0.0 2.2 1 1 1 2 2 2 0 NACHT domain AAA_24 PF13479.6 gi|126179252|ref|YP_001047217.1| - 0.039 13.7 0.6 0.08 12.7 0.0 1.9 2 1 0 2 2 1 0 AAA domain Filament PF00038.21 gi|126179252|ref|YP_001047217.1| - 0.039 13.5 3.7 0.073 12.6 3.7 1.4 1 0 0 1 1 1 0 Intermediate filament protein AAA_30 PF13604.6 gi|126179252|ref|YP_001047217.1| - 0.043 13.5 0.7 0.08 12.7 0.0 1.8 2 1 0 2 2 1 0 AAA domain TsaE PF02367.17 gi|126179252|ref|YP_001047217.1| - 0.047 13.7 0.0 0.095 12.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Parvo_NS1 PF01057.17 gi|126179252|ref|YP_001047217.1| - 0.049 12.7 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|126179252|ref|YP_001047217.1| - 0.049 13.1 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_7 PF12775.7 gi|126179252|ref|YP_001047217.1| - 0.065 12.7 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Sigma54_activ_2 PF14532.6 gi|126179252|ref|YP_001047217.1| - 0.072 13.2 0.0 0.19 11.9 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain Phage_lysis PF03245.13 gi|126179252|ref|YP_001047217.1| - 0.09 12.9 0.6 0.2 11.8 0.6 1.5 1 0 0 1 1 1 0 Bacteriophage Rz lysis protein NTPase_1 PF03266.15 gi|126179252|ref|YP_001047217.1| - 0.13 12.2 0.4 0.58 10.0 0.0 2.4 3 0 0 3 3 2 0 NTPase APG6_N PF17675.1 gi|126179252|ref|YP_001047217.1| - 0.21 12.1 5.2 0.49 10.9 5.2 1.6 1 0 0 1 1 1 0 Apg6 coiled-coil region GAS PF13851.6 gi|126179252|ref|YP_001047217.1| - 0.21 10.9 5.2 0.35 10.2 5.2 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF3450 PF11932.8 gi|126179252|ref|YP_001047217.1| - 0.37 10.1 2.6 0.67 9.2 2.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Tektin PF03148.14 gi|126179252|ref|YP_001047217.1| - 0.46 9.2 5.6 0.3 9.8 3.7 1.5 2 0 0 2 2 2 0 Tektin family Troponin PF00992.20 gi|126179252|ref|YP_001047217.1| - 0.52 10.6 5.9 0.96 9.7 5.9 1.3 1 0 0 1 1 1 0 Troponin bZIP_2 PF07716.15 gi|126179252|ref|YP_001047217.1| - 8.4 6.6 12.6 2.8 8.1 4.0 2.5 1 1 1 2 2 2 0 Basic region leucine zipper Acetyltransf_3 PF13302.7 gi|126179253|ref|YP_001047218.1| - 1.3e-18 68.0 0.0 1.7e-18 67.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|126179253|ref|YP_001047218.1| - 2.5e-06 27.7 0.0 3.6e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|126179253|ref|YP_001047218.1| - 3.7e-06 27.2 0.0 4.7e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|126179253|ref|YP_001047218.1| - 0.12 12.1 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AAA PF00004.29 gi|126179255|ref|YP_001047220.1| - 4.8e-44 150.0 0.0 9.8e-44 149.0 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|126179255|ref|YP_001047220.1| - 9.2e-12 44.6 0.6 2.8e-11 43.0 0.6 1.9 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|126179255|ref|YP_001047220.1| - 3.1e-08 33.9 0.0 9.3e-08 32.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|126179255|ref|YP_001047220.1| - 1.2e-06 29.0 0.8 0.00025 21.5 0.0 2.9 2 1 1 3 3 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|126179255|ref|YP_001047220.1| - 1.2e-05 25.1 0.0 4.1e-05 23.4 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|126179255|ref|YP_001047220.1| - 8.8e-05 22.8 0.5 0.0027 18.0 0.0 2.8 2 1 1 3 3 3 1 AAA domain AAA_5 PF07728.14 gi|126179255|ref|YP_001047220.1| - 9.6e-05 22.4 0.2 0.00066 19.7 0.2 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|126179255|ref|YP_001047220.1| - 0.00047 19.5 0.0 0.0011 18.3 0.0 1.5 1 0 0 1 1 1 1 TIP49 P-loop domain NRBF2 PF08961.10 gi|126179255|ref|YP_001047220.1| - 0.0037 16.9 0.5 0.0072 16.0 0.5 1.4 1 0 0 1 1 1 1 Nuclear receptor-binding factor 2, autophagy regulator AAA_33 PF13671.6 gi|126179255|ref|YP_001047220.1| - 0.0041 17.3 0.0 0.012 15.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|126179255|ref|YP_001047220.1| - 0.0048 17.4 0.1 0.028 15.0 0.0 2.2 3 0 0 3 3 2 1 AAA domain Mg_chelatase PF01078.21 gi|126179255|ref|YP_001047220.1| - 0.0062 15.9 0.3 0.022 14.1 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI GrpE PF01025.19 gi|126179255|ref|YP_001047220.1| - 0.0069 16.1 1.0 0.018 14.7 1.0 1.7 1 0 0 1 1 1 1 GrpE AAA_14 PF13173.6 gi|126179255|ref|YP_001047220.1| - 0.0078 16.3 0.0 0.018 15.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|126179255|ref|YP_001047220.1| - 0.0079 15.9 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein Prot_ATP_ID_OB PF16450.5 gi|126179255|ref|YP_001047220.1| - 0.011 15.7 0.2 0.036 14.0 0.2 1.9 1 0 0 1 1 1 0 Proteasomal ATPase OB C-terminal domain Sigma54_activat PF00158.26 gi|126179255|ref|YP_001047220.1| - 0.012 15.3 0.1 0.053 13.2 0.0 2.1 2 1 0 2 2 2 0 Sigma-54 interaction domain DUF815 PF05673.13 gi|126179255|ref|YP_001047220.1| - 0.018 14.2 0.0 0.028 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Prot_ATP_OB_N PF17758.1 gi|126179255|ref|YP_001047220.1| - 0.019 14.6 0.1 0.064 12.9 0.0 1.8 2 0 0 2 2 1 0 Proteasomal ATPase OB N-terminal domain AAA_24 PF13479.6 gi|126179255|ref|YP_001047220.1| - 0.021 14.6 0.1 0.047 13.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|126179255|ref|YP_001047220.1| - 0.021 15.2 0.0 0.04 14.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.12 gi|126179255|ref|YP_001047220.1| - 0.025 14.5 0.0 5.6 6.9 0.0 2.3 1 1 1 2 2 2 0 NACHT domain AAA_7 PF12775.7 gi|126179255|ref|YP_001047220.1| - 0.038 13.5 0.0 0.071 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|126179255|ref|YP_001047220.1| - 0.04 13.2 0.0 0.083 12.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 gi|126179255|ref|YP_001047220.1| - 0.041 14.1 0.0 0.1 12.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|126179255|ref|YP_001047220.1| - 0.044 13.7 0.4 2.7 7.8 0.0 2.9 2 1 1 3 3 3 0 ATPase domain predominantly from Archaea AAA_3 PF07726.11 gi|126179255|ref|YP_001047220.1| - 0.048 13.5 0.0 0.16 11.9 0.0 1.8 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|126179255|ref|YP_001047220.1| - 0.071 13.1 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|126179255|ref|YP_001047220.1| - 0.073 12.8 0.4 0.38 10.4 0.0 2.3 3 0 0 3 3 2 0 AAA domain Parvo_NS1 PF01057.17 gi|126179255|ref|YP_001047220.1| - 0.083 12.0 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ATPase PF06745.13 gi|126179255|ref|YP_001047220.1| - 0.11 11.8 0.1 0.65 9.3 0.1 2.2 1 1 1 2 2 2 0 KaiC ZapB PF06005.12 gi|126179255|ref|YP_001047220.1| - 0.12 12.8 5.5 0.7 10.4 2.1 2.9 3 0 0 3 3 3 0 Cell division protein ZapB Glyco_hydro_114 PF03537.13 gi|126179255|ref|YP_001047220.1| - 0.18 11.1 0.0 0.39 10.0 0.0 1.5 1 0 0 1 1 1 0 Glycoside-hydrolase family GH114 YabA PF06156.13 gi|126179255|ref|YP_001047220.1| - 0.2 12.3 1.2 9.6 6.9 0.5 2.4 2 0 0 2 2 2 0 Initiation control protein YabA bZIP_2 PF07716.15 gi|126179255|ref|YP_001047220.1| - 3.4 7.8 8.1 1.1 9.3 4.8 2.0 2 0 0 2 2 1 0 Basic region leucine zipper DUF126 PF01989.16 gi|126179256|ref|YP_001047221.1| - 4e-37 125.9 0.4 6.4e-37 125.2 0.4 1.3 1 0 0 1 1 1 1 Aconitase X swivel domain RNase_II_C_S1 PF18614.1 gi|126179256|ref|YP_001047221.1| - 0.14 12.1 0.1 0.46 10.5 0.0 1.8 2 0 0 2 2 2 0 RNase II-type exonuclease C-terminal S1 domain DnaJ PF00226.31 gi|126179257|ref|YP_001047222.1| - 1e-23 83.2 0.4 1.3e-23 82.8 0.4 1.1 1 0 0 1 1 1 1 DnaJ domain DUF2534 PF10749.9 gi|126179257|ref|YP_001047222.1| - 0.1 12.8 0.2 0.16 12.2 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2534) PAS_9 PF13426.7 gi|126179257|ref|YP_001047222.1| - 0.2 11.9 0.0 0.41 10.9 0.0 1.4 1 1 0 1 1 1 0 PAS domain DUF4834 PF16118.5 gi|126179257|ref|YP_001047222.1| - 0.31 12.0 1.4 0.51 11.3 1.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) Rubredoxin PF00301.20 gi|126179258|ref|YP_001047223.1| - 1.4e-37 127.4 12.6 2.6e-19 69.0 2.4 2.1 2 0 0 2 2 2 2 Rubredoxin DZR PF12773.7 gi|126179258|ref|YP_001047223.1| - 5.7e-05 23.1 1.0 0.08 13.0 0.1 3.2 2 1 0 2 2 2 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|126179258|ref|YP_001047223.1| - 0.00013 21.4 11.2 1.3 8.6 0.1 4.1 4 0 0 4 4 4 3 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|126179258|ref|YP_001047223.1| - 0.00046 20.1 7.9 8 6.5 0.1 4.2 4 0 0 4 4 4 0 Nudix N-terminal zf-CCHC_2 PF13696.6 gi|126179258|ref|YP_001047223.1| - 0.00085 19.1 23.9 0.1 12.5 0.3 4.2 4 0 0 4 4 4 3 Zinc knuckle Zn-ribbon_8 PF09723.10 gi|126179258|ref|YP_001047223.1| - 0.0013 18.9 13.3 0.54 10.4 2.1 3.9 2 2 0 2 2 2 2 Zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|126179258|ref|YP_001047223.1| - 0.0016 18.1 10.0 6.8 6.5 0.0 4.1 4 0 0 4 4 4 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-nanos PF05741.13 gi|126179258|ref|YP_001047223.1| - 0.0025 18.0 10.8 0.29 11.4 0.1 4.1 4 0 0 4 4 4 1 Nanos RNA binding domain zf-H2C2_2 PF13465.6 gi|126179258|ref|YP_001047223.1| - 0.0027 18.0 15.2 2.2 8.9 0.6 4.3 4 0 0 4 4 4 1 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.7 gi|126179258|ref|YP_001047223.1| - 0.0029 17.5 9.7 0.32 11.0 0.3 3.3 3 0 0 3 3 3 1 Transposase zinc-ribbon domain PHD_4 PF16866.5 gi|126179258|ref|YP_001047223.1| - 0.0045 17.1 2.7 0.068 13.3 1.7 2.9 1 1 1 2 2 2 2 PHD-finger HypA PF01155.19 gi|126179258|ref|YP_001047223.1| - 0.0049 16.9 1.2 1.2 9.2 0.3 2.4 1 1 1 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Vps36-NZF-N PF16988.5 gi|126179258|ref|YP_001047223.1| - 0.0049 16.2 0.1 9.3 5.7 0.0 3.3 3 0 0 3 3 3 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain C1_2 PF03107.16 gi|126179258|ref|YP_001047223.1| - 0.0087 16.4 11.8 0.27 11.6 1.2 3.7 3 1 0 3 3 3 1 C1 domain OrfB_Zn_ribbon PF07282.11 gi|126179258|ref|YP_001047223.1| - 0.014 15.3 2.9 0.4 10.6 0.1 3.2 3 1 0 3 3 3 0 Putative transposase DNA-binding domain zf-C2H2_3 PF13878.6 gi|126179258|ref|YP_001047223.1| - 0.015 15.1 10.0 9.2 6.2 0.0 4.2 4 0 0 4 4 4 0 zinc-finger of acetyl-transferase ESCO Rubredoxin_2 PF18073.1 gi|126179258|ref|YP_001047223.1| - 0.038 13.7 15.0 1.4 8.7 0.3 4.2 4 0 0 4 4 4 0 Rubredoxin metal binding domain zf-C2H2_4 PF13894.6 gi|126179258|ref|YP_001047223.1| - 0.043 14.7 13.0 9.7 7.3 0.1 4.2 4 0 0 4 4 4 0 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|126179258|ref|YP_001047223.1| - 0.052 14.0 19.4 3.7 8.2 0.8 4.2 4 0 0 4 4 4 0 Zinc finger, C2H2 type zf-BED PF02892.15 gi|126179258|ref|YP_001047223.1| - 0.066 13.2 7.8 2 8.5 0.2 3.2 4 0 0 4 4 3 0 BED zinc finger A2L_zn_ribbon PF08792.10 gi|126179258|ref|YP_001047223.1| - 0.078 12.7 13.6 6.1 6.7 0.1 4.1 4 0 0 4 4 4 0 A2L zinc ribbon domain zf-TFIIB PF13453.6 gi|126179258|ref|YP_001047223.1| - 0.1 12.0 2.4 1.5 8.2 0.1 2.6 3 0 0 3 3 2 0 Transcription factor zinc-finger SPRY PF00622.28 gi|126179258|ref|YP_001047223.1| - 0.1 12.7 0.0 5.3 7.2 0.0 2.2 2 0 0 2 2 2 0 SPRY domain RbpA PF13397.6 gi|126179258|ref|YP_001047223.1| - 0.13 12.8 0.3 15 6.3 0.0 2.6 2 1 1 3 3 3 0 RNA polymerase-binding protein zf-Di19 PF05605.12 gi|126179258|ref|YP_001047223.1| - 0.16 12.3 8.8 6.6 7.1 0.1 3.7 4 0 0 4 4 4 0 Drought induced 19 protein (Di19), zinc-binding Rad50_zn_hook PF04423.14 gi|126179258|ref|YP_001047223.1| - 0.22 11.4 2.4 13 5.7 0.3 2.3 2 0 0 2 2 2 0 Rad50 zinc hook motif Zn_ribbon_SprT PF17283.2 gi|126179258|ref|YP_001047223.1| - 0.28 11.1 20.7 4 7.4 3.4 4.0 3 1 0 3 3 3 0 SprT-like zinc ribbon domain zf-Mss51 PF13824.6 gi|126179258|ref|YP_001047223.1| - 0.48 10.5 13.8 5.4 7.2 0.1 3.8 1 1 3 4 4 4 0 Zinc-finger of mitochondrial splicing suppressor 51 PyrI_C PF02748.15 gi|126179258|ref|YP_001047223.1| - 0.85 9.6 9.2 1.5 8.8 1.7 2.8 3 0 0 3 3 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-C2H2_6 PF13912.6 gi|126179258|ref|YP_001047223.1| - 1.1 9.4 17.4 11 6.2 0.1 4.2 4 0 0 4 4 4 0 C2H2-type zinc finger ADK_lid PF05191.14 gi|126179258|ref|YP_001047223.1| - 1.6 8.8 15.9 0.62 10.1 2.0 2.8 2 1 0 2 2 2 0 Adenylate kinase, active site lid Ribosomal_L37ae PF01780.19 gi|126179258|ref|YP_001047223.1| - 1.7 8.8 7.9 2.3 8.4 1.3 3.1 3 1 0 3 3 3 0 Ribosomal L37ae protein family zf-HIT PF04438.16 gi|126179258|ref|YP_001047223.1| - 2.3 8.2 17.6 38 4.3 0.7 4.1 4 0 0 4 4 4 0 HIT zinc finger FdhE PF04216.12 gi|126179258|ref|YP_001047223.1| - 2.8 7.8 6.4 7.5 6.3 0.1 2.5 3 0 0 3 3 2 0 Protein involved in formate dehydrogenase formation zf-ribbon_3 PF13248.6 gi|126179258|ref|YP_001047223.1| - 3.1 7.3 15.8 5.1 6.7 0.2 4.0 4 0 0 4 4 4 0 zinc-ribbon domain TPR_2 PF07719.17 gi|126179259|ref|YP_001047224.1| - 4.2e-160 507.4 74.5 6.6e-07 29.0 0.0 30.1 30 0 0 30 30 30 27 Tetratricopeptide repeat TPR_1 PF00515.28 gi|126179259|ref|YP_001047224.1| - 2.9e-143 460.5 51.7 1.9e-07 30.6 0.0 29.9 30 0 0 30 30 30 23 Tetratricopeptide repeat TPR_16 PF13432.6 gi|126179259|ref|YP_001047224.1| - 1.6e-123 403.1 96.1 3.4e-10 40.4 0.3 17.6 9 3 9 20 20 20 20 Tetratricopeptide repeat TPR_8 PF13181.6 gi|126179259|ref|YP_001047224.1| - 3.3e-120 382.5 24.8 5.7e-06 26.1 0.2 29.6 30 0 0 30 30 30 20 Tetratricopeptide repeat TPR_19 PF14559.6 gi|126179259|ref|YP_001047224.1| - 2.5e-113 370.7 56.3 2.3e-09 37.6 0.1 18.7 8 6 8 19 19 19 19 Tetratricopeptide repeat TPR_14 PF13428.6 gi|126179259|ref|YP_001047224.1| - 1.3e-110 352.5 104.8 4.2e-07 30.2 0.3 29.8 5 4 25 30 30 30 29 Tetratricopeptide repeat TPR_7 PF13176.6 gi|126179259|ref|YP_001047224.1| - 2.6e-86 277.5 66.8 8.8e-05 22.3 0.2 29.6 29 1 1 30 30 30 18 Tetratricopeptide repeat TPR_17 PF13431.6 gi|126179259|ref|YP_001047224.1| - 2.9e-86 277.8 24.4 2.2e-05 24.5 0.0 28.2 29 1 1 30 30 28 16 Tetratricopeptide repeat TPR_12 PF13424.6 gi|126179259|ref|YP_001047224.1| - 4e-84 277.0 91.2 1.1e-07 32.1 0.2 21.6 11 8 9 20 20 20 18 Tetratricopeptide repeat TPR_11 PF13414.6 gi|126179259|ref|YP_001047224.1| - 6.4e-78 256.2 40.8 9.3e-06 25.2 0.1 27.6 14 8 16 30 30 30 19 TPR repeat TPR_9 PF13371.6 gi|126179259|ref|YP_001047224.1| - 2.6e-75 248.6 84.3 3.9e-07 30.1 0.1 19.0 4 4 11 19 19 19 17 Tetratricopeptide repeat TPR_6 PF13174.6 gi|126179259|ref|YP_001047224.1| - 7.7e-68 220.8 52.3 0.0015 19.0 0.1 27.4 29 0 0 29 29 27 14 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|126179259|ref|YP_001047224.1| - 3.8e-61 203.3 24.8 4.3e-06 26.9 0.0 12.9 6 5 6 13 13 13 13 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.6 gi|126179259|ref|YP_001047224.1| - 1.1e-37 127.9 22.1 0.0023 17.9 0.0 21.0 18 3 4 22 22 22 5 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 gi|126179259|ref|YP_001047224.1| - 8.3e-32 110.8 8.0 0.022 13.7 0.0 13.6 4 3 8 14 14 14 9 NMDA receptor-regulated protein 1 TPR_10 PF13374.6 gi|126179259|ref|YP_001047224.1| - 1.5e-30 104.2 84.8 0.45 10.5 0.0 27.7 29 0 0 29 29 28 7 Tetratricopeptide repeat TPR_15 PF13429.6 gi|126179259|ref|YP_001047224.1| - 3e-28 98.8 33.6 0.00026 20.3 2.4 11.0 3 2 7 11 11 11 9 Tetratricopeptide repeat TPR_4 PF07721.14 gi|126179259|ref|YP_001047224.1| - 9.2e-27 90.9 117.3 0.41 11.4 1.2 28.0 29 0 0 29 29 28 6 Tetratricopeptide repeat BTAD PF03704.17 gi|126179259|ref|YP_001047224.1| - 1.7e-23 83.6 72.0 0.0025 18.2 2.8 15.3 5 4 11 16 16 16 9 Bacterial transcriptional activator domain SRP_TPR_like PF17004.5 gi|126179259|ref|YP_001047224.1| - 9.1e-21 74.1 0.0 0.023 14.7 0.0 10.3 5 2 5 10 10 9 4 Putative TPR-like repeat TPR_20 PF14561.6 gi|126179259|ref|YP_001047224.1| - 1.2e-20 73.6 32.0 0.5 10.7 0.1 16.2 6 5 8 17 17 17 4 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|126179259|ref|YP_001047224.1| - 1e-19 71.4 11.0 0.0089 16.5 0.5 10.9 5 3 3 12 12 11 3 Alkyl sulfatase dimerisation DUF3856 PF12968.7 gi|126179259|ref|YP_001047224.1| - 3.8e-18 65.9 41.8 0.12 12.4 0.1 20.0 7 4 7 15 15 15 2 Domain of Unknown Function (DUF3856) PknG_TPR PF16918.5 gi|126179259|ref|YP_001047224.1| - 7.2e-18 64.4 29.8 0.0049 15.6 1.3 9.6 3 2 3 9 9 9 7 Protein kinase G tetratricopeptide repeat TPR_21 PF09976.9 gi|126179259|ref|YP_001047224.1| - 7.8e-14 51.8 34.8 0.05 13.3 0.3 10.6 3 3 7 10 10 10 4 Tetratricopeptide repeat-like domain Coatomer_E PF04733.14 gi|126179259|ref|YP_001047224.1| - 8.8e-08 31.9 6.6 0.52 9.7 0.0 7.1 5 3 1 8 8 6 1 Coatomer epsilon subunit SPOB_a PF14689.6 gi|126179259|ref|YP_001047224.1| - 4.1e-07 29.6 1.8 30 4.4 0.0 10.1 13 0 0 13 13 12 0 Sensor_kinase_SpoOB-type, alpha-helical domain TPR_5 PF12688.7 gi|126179259|ref|YP_001047224.1| - 2.2e-06 27.9 37.5 1.6 9.0 0.2 11.1 6 4 4 10 10 10 1 Tetratrico peptide repeat Paf67 PF10255.9 gi|126179259|ref|YP_001047224.1| - 4.4e-06 26.0 1.3 14 4.5 0.0 7.3 6 2 1 8 8 7 0 RNA polymerase I-associated factor PAF67 PPR PF01535.20 gi|126179259|ref|YP_001047224.1| - 1e-05 25.4 44.2 21 5.6 0.1 19.0 25 0 0 25 25 20 0 PPR repeat HrpB1_HrpK PF09613.10 gi|126179259|ref|YP_001047224.1| - 5.1e-05 22.9 5.3 0.026 14.2 0.1 6.9 4 3 1 8 8 8 1 Bacterial type III secretion protein (HrpB1_HrpK) RPN7 PF10602.9 gi|126179259|ref|YP_001047224.1| - 6.3e-05 22.7 26.9 13 5.4 0.0 13.7 10 6 4 14 14 13 0 26S proteasome subunit RPN7 SMG1 PF15785.5 gi|126179259|ref|YP_001047224.1| - 0.00012 20.7 3.8 1.7 6.9 0.0 5.7 5 1 1 6 6 6 1 Serine/threonine-protein kinase smg-1 MIT PF04212.18 gi|126179259|ref|YP_001047224.1| - 0.0003 20.8 39.3 5.4 7.2 0.0 15.5 18 2 2 20 20 14 0 MIT (microtubule interacting and transport) domain PPTA PF01239.22 gi|126179259|ref|YP_001047224.1| - 0.00056 19.6 0.4 8.9 6.2 0.1 4.5 4 0 0 4 4 3 0 Protein prenyltransferase alpha subunit repeat YfiO PF13525.6 gi|126179259|ref|YP_001047224.1| - 0.0011 18.8 1.6 4.3 7.0 0.1 5.0 5 0 0 5 5 4 0 Outer membrane lipoprotein ChAPs PF09295.10 gi|126179259|ref|YP_001047224.1| - 0.0011 18.1 0.0 0.98 8.3 0.0 3.4 3 1 0 4 4 4 1 ChAPs (Chs5p-Arf1p-binding proteins) SNAP PF14938.6 gi|126179259|ref|YP_001047224.1| - 0.0027 17.2 29.3 0.28 10.6 1.0 8.6 5 3 2 8 8 8 1 Soluble NSF attachment protein, SNAP DUF4919 PF16266.5 gi|126179259|ref|YP_001047224.1| - 0.021 14.8 0.0 4.3 7.2 0.0 3.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4919) DUF4142 PF13628.6 gi|126179259|ref|YP_001047224.1| - 0.023 14.9 0.7 0.15 12.3 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4142) NRBF2_MIT PF17169.4 gi|126179259|ref|YP_001047224.1| - 0.023 14.9 42.2 0.89 9.8 0.2 14.6 14 4 5 19 19 14 0 MIT domain of nuclear receptor-binding factor 2 DUF5113 PF17140.4 gi|126179259|ref|YP_001047224.1| - 0.03 14.1 2.7 68 3.2 0.0 7.1 9 2 2 11 11 7 0 Domain of unknown function (DUF5113) Type_III_YscG PF09477.10 gi|126179259|ref|YP_001047224.1| - 0.039 14.0 16.6 16 5.6 0.1 8.1 7 2 1 11 11 7 0 Bacterial type II secretion system chaperone protein (type_III_yscG) TPR_3 PF07720.12 gi|126179259|ref|YP_001047224.1| - 0.049 13.7 28.1 1 9.4 0.0 11.7 17 0 0 17 17 10 0 Tetratricopeptide repeat Wzy_C_2 PF11846.8 gi|126179259|ref|YP_001047224.1| - 0.057 13.3 11.9 8.9 6.2 0.0 7.4 7 3 3 10 10 7 0 Virulence factor membrane-bound polymerase, C-terminal DUF627 PF04781.12 gi|126179259|ref|YP_001047224.1| - 0.063 13.3 3.0 1.3e+02 2.7 0.1 6.6 8 2 0 8 8 6 0 Protein of unknown function (DUF627) SHNi-TPR PF10516.9 gi|126179259|ref|YP_001047224.1| - 0.12 11.8 10.6 1.2 8.7 0.0 6.6 9 0 0 9 9 4 0 SHNi-TPR Clathrin_H_link PF13838.6 gi|126179259|ref|YP_001047224.1| - 0.6 10.1 2.1 1.2e+02 2.7 0.0 5.5 6 0 0 6 6 5 0 Clathrin-H-link PPR_2 PF13041.6 gi|126179259|ref|YP_001047224.1| - 1.1 9.5 9.4 89 3.4 0.0 7.7 9 0 0 9 9 5 0 PPR repeat family HemY_N PF07219.13 gi|126179259|ref|YP_001047224.1| - 4.1 7.6 8.9 23 5.3 0.0 5.8 5 1 1 6 6 4 0 HemY protein N-terminus FKBP_C PF00254.28 gi|126179260|ref|YP_001047225.1| - 2.4e-26 91.9 0.0 3.1e-26 91.5 0.0 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Cu-oxidase_3 PF07732.15 gi|126179260|ref|YP_001047225.1| - 0.049 13.7 0.0 2.7 8.0 0.0 2.2 2 0 0 2 2 2 0 Multicopper oxidase DUF21 PF01595.20 gi|126179261|ref|YP_001047226.1| - 4.6e-49 166.5 5.4 6.5e-49 166.0 5.4 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|126179261|ref|YP_001047226.1| - 1.1e-21 76.7 0.0 7.8e-21 73.9 0.0 2.3 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|126179261|ref|YP_001047226.1| - 5.7e-10 39.5 0.9 0.00068 20.0 0.0 2.7 2 0 0 2 2 2 2 CBS domain AhpC-TSA PF00578.21 gi|126179262|ref|YP_001047227.1| - 8.4e-28 96.8 0.0 1.1e-27 96.3 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|126179262|ref|YP_001047227.1| - 2.5e-15 56.5 0.0 3.1e-15 56.2 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|126179262|ref|YP_001047227.1| - 0.012 15.6 0.0 0.079 12.9 0.0 1.9 2 0 0 2 2 2 0 SCO1/SenC SNF PF00209.18 gi|126179263|ref|YP_001047228.1| - 7.6e-71 239.4 32.3 5.2e-38 131.0 16.1 2.1 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family FGase PF05013.12 gi|126179264|ref|YP_001047229.1| - 1.1e-50 172.9 0.0 1.3e-50 172.6 0.0 1.0 1 0 0 1 1 1 1 N-formylglutamate amidohydrolase Helicase_C PF00271.31 gi|126179265|ref|YP_001047230.1| - 9.9e-22 77.4 0.0 8.5e-19 67.9 0.0 2.9 3 0 0 3 3 3 2 Helicase conserved C-terminal domain DEAD PF00270.29 gi|126179265|ref|YP_001047230.1| - 4.4e-18 65.6 0.0 7.9e-18 64.8 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase RecQ_Zn_bind PF16124.5 gi|126179265|ref|YP_001047230.1| - 8.6e-18 64.8 2.9 8.6e-18 64.8 2.9 1.9 2 0 0 2 2 2 1 RecQ zinc-binding HEM4 PF02602.15 gi|126179265|ref|YP_001047230.1| - 0.065 12.6 0.0 0.19 11.1 0.0 1.7 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD PspC PF04024.12 gi|126179266|ref|YP_001047231.1| - 1.4e-23 82.4 0.8 1.6e-23 82.2 0.8 1.0 1 0 0 1 1 1 1 PspC domain UvrB_inter PF17757.1 gi|126179267|ref|YP_001047232.1| - 2.4e-29 101.4 2.6 4.3e-29 100.5 0.8 2.4 2 0 0 2 2 2 1 UvrB interaction domain UvrB PF12344.8 gi|126179267|ref|YP_001047232.1| - 1e-20 73.3 0.5 2.2e-20 72.2 0.5 1.6 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|126179267|ref|YP_001047232.1| - 3.9e-17 62.6 0.1 1e-16 61.3 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|126179267|ref|YP_001047232.1| - 4.6e-11 43.0 0.0 4.4e-10 39.8 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.19 gi|126179267|ref|YP_001047232.1| - 1.5e-10 40.5 2.3 1.5e-10 40.5 2.3 2.9 4 0 0 4 4 4 1 UvrB/uvrC motif AAA_30 PF13604.6 gi|126179267|ref|YP_001047232.1| - 5e-06 26.4 0.0 0.0032 17.2 0.0 2.7 2 1 0 2 2 2 2 AAA domain DEAD PF00270.29 gi|126179267|ref|YP_001047232.1| - 0.00018 21.3 0.0 0.019 14.7 0.0 3.2 3 1 0 3 3 3 1 DEAD/DEAH box helicase AAA_19 PF13245.6 gi|126179267|ref|YP_001047232.1| - 0.0024 18.2 1.0 2.4 8.5 0.1 2.8 2 1 0 2 2 2 2 AAA domain DUF87 PF01935.17 gi|126179267|ref|YP_001047232.1| - 0.13 12.4 0.0 1.4 8.9 0.0 2.2 2 0 0 2 2 2 0 Helicase HerA, central domain UvrD-helicase PF00580.21 gi|126179267|ref|YP_001047232.1| - 0.13 11.7 1.0 8.6 5.8 0.1 2.3 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain Pyr_redox_2 PF07992.14 gi|126179267|ref|YP_001047232.1| - 0.15 11.3 0.0 0.31 10.2 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AAA_22 PF13401.6 gi|126179267|ref|YP_001047232.1| - 0.15 12.3 0.0 0.74 10.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain UvrC_HhH_N PF08459.11 gi|126179268|ref|YP_001047233.1| - 2.1e-51 173.9 0.0 4.5e-51 172.8 0.0 1.6 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal UVR PF02151.19 gi|126179268|ref|YP_001047233.1| - 6.6e-10 38.4 1.8 1.6e-09 37.2 1.8 1.7 1 0 0 1 1 1 1 UvrB/uvrC motif GIY-YIG PF01541.24 gi|126179268|ref|YP_001047233.1| - 7.5e-10 39.0 0.0 1.7e-09 37.8 0.0 1.7 1 0 0 1 1 1 1 GIY-YIG catalytic domain UvrA_inter PF17760.1 gi|126179269|ref|YP_001047234.1| - 8.1e-33 112.8 0.7 2.1e-32 111.4 0.4 1.9 2 0 0 2 2 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|126179269|ref|YP_001047234.1| - 1.1e-31 109.5 0.0 7.8e-30 103.5 0.0 3.2 5 0 0 5 5 2 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|126179269|ref|YP_001047234.1| - 4.1e-20 72.7 0.8 3.3e-08 34.1 0.1 4.5 4 1 0 4 4 3 3 ABC transporter SMC_N PF02463.19 gi|126179269|ref|YP_001047234.1| - 6.1e-09 35.6 0.0 0.2 11.1 0.0 4.1 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|126179269|ref|YP_001047234.1| - 3.6e-08 33.0 0.2 0.012 15.3 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|126179269|ref|YP_001047234.1| - 5e-08 33.5 2.1 0.029 14.7 0.3 3.9 3 1 0 3 3 3 2 AAA ATPase domain AAA_21 PF13304.6 gi|126179269|ref|YP_001047234.1| - 8.7e-08 32.3 0.9 1.1 9.0 0.0 4.4 4 0 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|126179269|ref|YP_001047234.1| - 1.9e-06 28.2 0.7 0.33 11.2 0.0 4.1 4 0 0 4 4 4 2 AAA domain AAA_23 PF13476.6 gi|126179269|ref|YP_001047234.1| - 4e-06 27.5 0.3 0.085 13.3 0.1 2.7 3 0 0 3 3 2 2 AAA domain RsgA_GTPase PF03193.16 gi|126179269|ref|YP_001047234.1| - 1.3e-05 25.1 0.0 0.17 11.8 0.0 2.6 2 0 0 2 2 2 2 RsgA GTPase AAA_14 PF13173.6 gi|126179269|ref|YP_001047234.1| - 1.3e-05 25.2 0.0 0.26 11.3 0.0 3.3 3 0 0 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|126179269|ref|YP_001047234.1| - 2.1e-05 24.7 0.2 0.56 10.4 0.0 3.6 4 0 0 4 4 3 2 AAA domain AAA_25 PF13481.6 gi|126179269|ref|YP_001047234.1| - 2.1e-05 24.2 0.1 0.19 11.3 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_18 PF13238.6 gi|126179269|ref|YP_001047234.1| - 0.0002 21.9 0.1 0.45 11.0 0.1 2.8 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|126179269|ref|YP_001047234.1| - 0.0002 21.2 0.0 0.096 12.4 0.0 2.7 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_15 PF13175.6 gi|126179269|ref|YP_001047234.1| - 0.00028 20.7 0.1 13 5.3 0.0 4.1 4 0 0 4 4 4 0 AAA ATPase domain AAA_24 PF13479.6 gi|126179269|ref|YP_001047234.1| - 0.00042 20.1 0.2 1.4 8.6 0.0 3.3 3 0 0 3 3 3 1 AAA domain ATPase PF06745.13 gi|126179269|ref|YP_001047234.1| - 0.00042 19.7 0.1 0.45 9.8 0.0 2.8 3 0 0 3 3 2 2 KaiC APS_kinase PF01583.20 gi|126179269|ref|YP_001047234.1| - 0.00046 20.1 0.1 0.72 9.7 0.0 2.6 2 0 0 2 2 2 2 Adenylylsulphate kinase DnaJ_CXXCXGXG PF00684.19 gi|126179269|ref|YP_001047234.1| - 0.0005 20.4 5.1 0.048 14.0 0.2 3.4 3 0 0 3 3 3 1 DnaJ central domain cobW PF02492.19 gi|126179269|ref|YP_001047234.1| - 0.00072 19.2 0.6 0.29 10.7 0.1 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|126179269|ref|YP_001047234.1| - 0.0011 18.0 0.1 1.4 7.9 0.0 2.5 2 0 0 2 2 2 2 Type II/IV secretion system protein DUF2075 PF09848.9 gi|126179269|ref|YP_001047234.1| - 0.0014 18.0 0.0 0.86 8.8 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|126179269|ref|YP_001047234.1| - 0.0024 17.8 0.0 1.3 8.9 0.0 2.4 2 0 0 2 2 2 1 NACHT domain AAA_30 PF13604.6 gi|126179269|ref|YP_001047234.1| - 0.0084 15.8 0.3 6 6.5 0.0 3.1 3 0 0 3 3 3 0 AAA domain RNA_helicase PF00910.22 gi|126179269|ref|YP_001047234.1| - 0.01 16.2 0.0 3.6 8.0 0.0 2.9 3 0 0 3 3 2 0 RNA helicase MeaB PF03308.16 gi|126179269|ref|YP_001047234.1| - 0.013 14.5 0.2 6.3 5.7 0.0 2.9 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ATPase_2 PF01637.18 gi|126179269|ref|YP_001047234.1| - 0.015 15.2 0.0 8.6 6.2 0.0 2.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea DAP3 PF10236.9 gi|126179269|ref|YP_001047234.1| - 0.085 12.0 0.3 5.7 6.0 0.2 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 NTPase_1 PF03266.15 gi|126179269|ref|YP_001047234.1| - 0.14 12.0 4.5 10 6.0 0.1 3.6 4 0 0 4 4 3 0 NTPase SbcCD_C PF13558.6 gi|126179269|ref|YP_001047234.1| - 0.17 12.1 1.0 43 4.5 0.2 3.5 3 1 0 3 3 3 0 Putative exonuclease SbcCD, C subunit Lar_restr_allev PF14354.6 gi|126179269|ref|YP_001047234.1| - 0.18 12.2 5.6 4.5 7.7 0.1 3.4 3 0 0 3 3 3 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|126179269|ref|YP_001047234.1| - 0.43 10.8 9.8 4.3 7.5 0.8 3.6 3 0 0 3 3 3 0 Zinc ribbon domain AAA_28 PF13521.6 gi|126179269|ref|YP_001047234.1| - 0.43 10.8 3.5 13 6.0 0.0 3.2 3 0 0 3 3 3 0 AAA domain BCA_ABC_TP_C PF12399.8 gi|126179269|ref|YP_001047234.1| - 0.8 9.7 5.3 12 6.0 0.5 3.0 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter Anti-TRAP PF15777.5 gi|126179269|ref|YP_001047234.1| - 1.6 8.8 13.5 2.5 8.1 0.1 3.9 4 0 0 4 4 4 0 Tryptophan RNA-binding attenuator protein inhibitory protein Rubrerythrin PF02915.17 gi|126179270|ref|YP_001047235.1| - 2.8e-16 60.1 1.4 7.5e-16 58.8 1.2 1.7 1 1 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|126179270|ref|YP_001047235.1| - 3.2e-05 24.2 1.1 0.0002 21.7 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) Ferritin_2 PF13668.6 gi|126179270|ref|YP_001047235.1| - 0.00013 22.2 1.8 0.03 14.5 0.1 2.1 2 0 0 2 2 2 2 Ferritin-like domain Ald_deCOase PF11266.8 gi|126179270|ref|YP_001047235.1| - 0.0081 15.9 0.5 0.1 12.3 0.1 2.0 2 0 0 2 2 2 1 Long-chain fatty aldehyde decarbonylase DUF5591 PF17884.1 gi|126179271|ref|YP_001047236.1| - 1.1e-14 54.6 0.0 1.6e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) RuBisCO_large PF00016.20 gi|126179272|ref|YP_001047237.1| - 6.7e-92 307.9 4.1 8e-92 307.6 4.1 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|126179272|ref|YP_001047237.1| - 8.1e-38 129.3 0.0 1.6e-37 128.3 0.0 1.5 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain DLH PF01738.18 gi|126179273|ref|YP_001047238.1| - 2e-05 24.3 0.0 4.4e-05 23.1 0.0 1.5 1 1 0 1 1 1 1 Dienelactone hydrolase family AXE1 PF05448.12 gi|126179273|ref|YP_001047238.1| - 5.1e-05 22.1 0.0 0.0013 17.5 0.0 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) BAAT_C PF08840.11 gi|126179273|ref|YP_001047238.1| - 0.0005 20.1 0.0 0.0017 18.3 0.0 1.8 1 1 0 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Hydrolase_4 PF12146.8 gi|126179273|ref|YP_001047238.1| - 0.0006 19.2 0.1 0.42 9.8 0.2 2.2 1 1 0 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|126179273|ref|YP_001047238.1| - 0.0017 17.9 0.0 0.0026 17.3 0.0 1.4 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 gi|126179273|ref|YP_001047238.1| - 0.01 16.4 14.6 0.024 15.3 13.9 1.8 1 1 0 1 1 1 0 Alpha/beta hydrolase family Abhydrolase_3 PF07859.13 gi|126179273|ref|YP_001047238.1| - 0.056 13.3 0.1 0.1 12.4 0.1 1.5 1 1 0 1 1 1 0 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 gi|126179273|ref|YP_001047238.1| - 0.066 12.8 0.0 0.094 12.3 0.0 1.3 1 1 0 1 1 1 0 alpha/beta hydrolase fold FSH1 PF03959.13 gi|126179273|ref|YP_001047238.1| - 0.068 12.8 0.0 0.098 12.3 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Halogen_Hydrol PF10112.9 gi|126179274|ref|YP_001047239.1| - 0.016 15.2 0.0 0.016 15.2 0.0 1.0 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF4191 PF13829.6 gi|126179274|ref|YP_001047239.1| - 0.095 12.0 0.1 0.1 11.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DDE_Tnp_1_2 PF13586.6 gi|126179275|ref|YP_001047240.1| - 1.2e-17 64.0 0.2 1.5e-17 63.7 0.2 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|126179275|ref|YP_001047240.1| - 5.1e-16 59.0 0.0 8e-16 58.3 0.0 1.3 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|126179275|ref|YP_001047240.1| - 0.0013 18.4 0.0 0.0017 18.0 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|126179276|ref|YP_001047241.1| - 3.5e-20 72.0 0.0 4.5e-20 71.7 0.0 1.1 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) HTH_5 PF01022.20 gi|126179277|ref|YP_001047242.1| - 2.1e-07 30.7 0.0 3.8e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|126179277|ref|YP_001047242.1| - 1.1e-06 28.4 0.0 1.6e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|126179277|ref|YP_001047242.1| - 2.5e-05 24.1 0.5 4.3e-05 23.3 0.5 1.5 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|126179277|ref|YP_001047242.1| - 0.00012 21.6 0.4 0.00026 20.5 0.1 1.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|126179277|ref|YP_001047242.1| - 0.00013 22.0 1.1 0.0002 21.3 1.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|126179277|ref|YP_001047242.1| - 0.00017 21.3 1.3 0.00036 20.3 0.2 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|126179277|ref|YP_001047242.1| - 0.0033 17.5 0.6 0.0061 16.7 0.6 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.9 gi|126179277|ref|YP_001047242.1| - 0.004 17.2 0.0 0.0055 16.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_23 PF13384.6 gi|126179277|ref|YP_001047242.1| - 0.0069 16.2 0.1 0.011 15.5 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain FaeA PF04703.12 gi|126179277|ref|YP_001047242.1| - 0.0077 16.6 0.1 0.011 16.1 0.1 1.3 1 0 0 1 1 1 1 FaeA-like protein HTH_10 PF04967.12 gi|126179277|ref|YP_001047242.1| - 0.03 14.1 0.1 0.057 13.2 0.1 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_CodY PF08222.11 gi|126179277|ref|YP_001047242.1| - 0.036 13.6 0.0 0.064 12.8 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain MarR PF01047.22 gi|126179277|ref|YP_001047242.1| - 0.044 13.7 0.0 0.07 13.1 0.0 1.6 1 1 0 1 1 1 0 MarR family HTH_29 PF13551.6 gi|126179277|ref|YP_001047242.1| - 0.096 12.7 0.1 0.15 12.1 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix TfuA PF07812.12 gi|126179279|ref|YP_001047244.1| - 1.5e-46 157.0 0.0 3.2e-46 156.0 0.0 1.5 2 0 0 2 2 2 1 TfuA-like protein YcaO PF02624.16 gi|126179280|ref|YP_001047245.1| - 4.5e-97 325.2 1.7 6.5e-97 324.7 0.9 1.6 2 0 0 2 2 2 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding MoaE PF02391.17 gi|126179281|ref|YP_001047246.1| - 1e-34 119.2 0.1 1.2e-34 119.0 0.1 1.0 1 0 0 1 1 1 1 MoaE protein Smr PF01713.21 gi|126179281|ref|YP_001047246.1| - 0.12 12.7 0.2 0.54 10.7 0.2 1.9 1 1 0 1 1 1 0 Smr domain ThiS PF02597.20 gi|126179282|ref|YP_001047247.1| - 2.2e-14 53.8 0.1 2.6e-14 53.6 0.1 1.1 1 0 0 1 1 1 1 ThiS family ThiF PF00899.21 gi|126179283|ref|YP_001047248.1| - 1.3e-65 221.2 0.2 1.5e-65 221.0 0.2 1.0 1 0 0 1 1 1 1 ThiF family Pyr_redox_2 PF07992.14 gi|126179283|ref|YP_001047248.1| - 0.0024 17.2 0.7 0.0048 16.2 0.3 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|126179283|ref|YP_001047248.1| - 0.0026 17.8 0.1 0.0039 17.3 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|126179283|ref|YP_001047248.1| - 0.009 15.7 0.2 0.013 15.1 0.2 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|126179283|ref|YP_001047248.1| - 0.023 14.6 0.6 0.032 14.1 0.6 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|126179283|ref|YP_001047248.1| - 0.041 14.3 0.3 0.077 13.5 0.3 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|126179283|ref|YP_001047248.1| - 0.044 13.3 0.1 0.069 12.7 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Ldh_1_N PF00056.23 gi|126179283|ref|YP_001047248.1| - 0.095 12.8 0.1 0.14 12.3 0.1 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain DAO PF01266.24 gi|126179283|ref|YP_001047248.1| - 0.17 11.4 9.0 0.06 12.9 4.9 2.0 1 1 0 2 2 2 0 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|126179283|ref|YP_001047248.1| - 0.19 12.3 2.3 0.42 11.2 2.1 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|126179283|ref|YP_001047248.1| - 0.42 10.9 3.1 2.7 8.3 3.1 2.0 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Acetyltransf_6 PF13480.7 gi|126179284|ref|YP_001047249.1| - 7.9e-08 32.6 0.0 1.7e-07 31.5 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|126179284|ref|YP_001047249.1| - 0.00022 20.2 0.1 0.0021 17.0 0.0 2.0 2 0 0 2 2 2 1 FemAB family PIN_12 PF16289.5 gi|126179285|ref|YP_001047250.1| - 1.2e-25 91.0 0.0 1.6e-25 90.5 0.0 1.2 1 0 0 1 1 1 1 PIN domain PIN_8 PF18476.1 gi|126179285|ref|YP_001047250.1| - 3.6e-10 40.1 0.0 1.3e-06 28.4 0.0 2.2 2 0 0 2 2 2 2 PIN like domain PIN PF01850.21 gi|126179285|ref|YP_001047250.1| - 4.7e-05 23.9 0.2 0.00013 22.5 0.0 1.8 2 0 0 2 2 2 1 PIN domain PAS_3 PF08447.12 gi|126179286|ref|YP_001047251.1| - 1.1e-31 109.0 0.0 1.1e-15 57.6 0.0 3.8 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|126179286|ref|YP_001047251.1| - 7.9e-29 100.0 0.0 2.2e-08 34.3 0.0 4.1 3 1 1 4 4 4 3 PAS domain PAS PF00989.25 gi|126179286|ref|YP_001047251.1| - 2.7e-26 91.8 0.1 4.2e-09 36.4 0.0 5.1 4 1 0 4 4 4 3 PAS fold Response_reg PF00072.24 gi|126179286|ref|YP_001047251.1| - 2e-22 79.5 0.0 5.4e-22 78.1 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|126179286|ref|YP_001047251.1| - 6.7e-18 65.0 0.2 6.3e-09 36.1 0.0 4.0 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|126179286|ref|YP_001047251.1| - 3.4e-13 49.3 0.0 0.0023 17.9 0.0 3.9 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|126179286|ref|YP_001047251.1| - 7.9e-13 48.9 0.1 5.8e-12 46.1 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|126179286|ref|YP_001047251.1| - 2.4e-11 44.4 0.0 9.1e-11 42.5 0.0 2.0 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.6 gi|126179286|ref|YP_001047251.1| - 1.8e-06 28.3 0.2 5.3e-06 26.8 0.2 1.9 1 0 0 1 1 1 1 GAF domain MLTR_LBD PF17765.1 gi|126179286|ref|YP_001047251.1| - 0.00083 19.5 0.2 0.32 11.1 0.0 3.9 3 1 1 4 4 4 1 MmyB-like transcription regulator ligand binding domain PAS_7 PF12860.7 gi|126179286|ref|YP_001047251.1| - 0.0023 18.1 0.4 6.9 6.9 0.0 5.3 4 2 1 5 5 5 1 PAS fold GAF_3 PF13492.6 gi|126179286|ref|YP_001047251.1| - 0.0029 17.9 0.0 0.011 16.1 0.0 2.0 1 1 0 1 1 1 1 GAF domain PAS_11 PF14598.6 gi|126179286|ref|YP_001047251.1| - 0.022 14.9 0.0 1.8 8.7 0.0 3.3 3 0 0 3 3 3 0 PAS domain Cytochrom_B562 PF07361.11 gi|126179286|ref|YP_001047251.1| - 0.024 15.3 0.0 0.078 13.6 0.0 1.9 1 0 0 1 1 1 0 Cytochrome b562 SPOB_a PF14689.6 gi|126179286|ref|YP_001047251.1| - 0.053 13.2 0.2 0.28 10.9 0.1 2.1 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA PF00512.25 gi|126179286|ref|YP_001047251.1| - 0.1 12.6 0.3 0.43 10.6 0.0 2.3 2 0 0 2 2 1 0 His Kinase A (phospho-acceptor) domain NPCBM_assoc PF10633.9 gi|126179287|ref|YP_001047252.1| - 2.3e-31 107.9 6.5 9.6e-23 80.2 0.6 4.5 4 0 0 4 4 4 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CarboxypepD_reg PF13620.6 gi|126179287|ref|YP_001047252.1| - 1.1e-09 38.4 0.2 1.1e-09 38.4 0.2 3.6 5 1 0 5 5 5 1 Carboxypeptidase regulatory-like domain DUF11 PF01345.18 gi|126179287|ref|YP_001047252.1| - 8.1e-08 32.5 5.6 7.2e-05 23.0 0.5 4.1 3 1 0 3 3 3 1 Domain of unknown function DUF11 CARDB PF07705.11 gi|126179287|ref|YP_001047252.1| - 1.4e-05 25.3 2.7 0.0021 18.3 0.1 3.9 4 1 0 4 4 3 1 CARDB fn3_6 PF17766.1 gi|126179287|ref|YP_001047252.1| - 9.1e-05 22.6 0.1 0.0041 17.3 0.0 3.2 2 2 1 3 3 3 1 Fibronectin type-III domain FixG_C PF11614.8 gi|126179287|ref|YP_001047252.1| - 0.00022 21.4 0.3 0.079 13.2 0.0 3.2 3 0 0 3 3 3 1 IG-like fold at C-terminal of FixG, putative oxidoreductase Transglut_N PF00868.20 gi|126179287|ref|YP_001047252.1| - 0.00076 19.8 0.0 1.3 9.4 0.0 3.4 3 0 0 3 3 3 1 Transglutaminase family DUF4832 PF16116.5 gi|126179287|ref|YP_001047252.1| - 0.0015 18.5 0.0 0.0058 16.5 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4832) fn3_5 PF06280.12 gi|126179287|ref|YP_001047252.1| - 0.0019 18.9 0.4 5.1 7.8 0.0 4.2 4 2 0 4 4 4 1 Fn3-like domain PEGA PF08308.11 gi|126179287|ref|YP_001047252.1| - 0.013 15.4 0.0 0.15 12.0 0.0 2.8 2 0 0 2 2 2 0 PEGA domain Big_1 PF02369.16 gi|126179287|ref|YP_001047252.1| - 0.059 13.4 0.1 0.059 13.4 0.1 2.4 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|126179287|ref|YP_001047252.1| - 0.24 11.7 4.3 0.15 12.4 0.7 2.6 3 0 0 3 3 3 0 Invasin, domain 3 Big_3_5 PF16640.5 gi|126179287|ref|YP_001047252.1| - 4.1 7.6 8.4 2.9 8.1 1.2 3.3 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 3) ABC2_membrane_2 PF12679.7 gi|126179288|ref|YP_001047253.1| - 7.4e-51 173.1 9.7 8.8e-51 172.9 9.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|126179288|ref|YP_001047253.1| - 8.1e-06 25.2 20.1 1.8e-05 24.0 19.8 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|126179288|ref|YP_001047253.1| - 2.6e-05 23.9 11.0 2.6e-05 23.9 11.0 2.3 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|126179288|ref|YP_001047253.1| - 7.7e-05 22.7 6.8 7.7e-05 22.7 6.8 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein PIG-P PF08510.12 gi|126179288|ref|YP_001047253.1| - 2.4 8.1 6.9 5.4 7.0 0.1 2.9 2 2 0 2 2 2 0 PIG-P ABC_tran PF00005.27 gi|126179289|ref|YP_001047254.1| - 5e-27 95.1 0.0 7.2e-27 94.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126179289|ref|YP_001047254.1| - 6.7e-11 42.5 0.4 1.8e-07 31.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|126179289|ref|YP_001047254.1| - 5e-05 23.9 0.0 9.2e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|126179289|ref|YP_001047254.1| - 0.042 14.3 0.5 0.081 13.4 0.3 1.5 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|126179289|ref|YP_001047254.1| - 0.058 13.1 0.1 1.9 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|126179289|ref|YP_001047254.1| - 0.083 12.7 0.1 0.18 11.5 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|126179289|ref|YP_001047254.1| - 0.2 11.3 0.0 16 5.0 0.1 2.1 1 1 1 2 2 2 0 AAA ATPase domain SMC_N PF02463.19 gi|126179289|ref|YP_001047254.1| - 0.21 11.0 0.0 30 4.0 0.0 2.6 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain PGF-CTERM PF18204.1 gi|126179290|ref|YP_001047255.1| - 0.0014 18.5 11.3 0.0057 16.6 11.3 2.1 1 1 0 1 1 1 1 PGF-CTERM motif SLATT_1 PF18181.1 gi|126179291|ref|YP_001047256.1| - 0.13 12.1 0.4 0.22 11.5 0.4 1.3 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 1 PGF-CTERM PF18204.1 gi|126179292|ref|YP_001047257.1| - 0.022 14.7 3.1 0.022 14.7 3.1 2.1 2 0 0 2 2 2 0 PGF-CTERM motif PfkB PF00294.24 gi|126179292|ref|YP_001047257.1| - 0.055 12.8 0.2 0.082 12.2 0.2 1.1 1 0 0 1 1 1 0 pfkB family carbohydrate kinase MASE3 PF17159.4 gi|126179294|ref|YP_001047259.1| - 8.9e-80 267.5 17.0 1.2e-79 267.1 17.0 1.2 1 0 0 1 1 1 1 Membrane-associated sensor domain PAS_4 PF08448.10 gi|126179294|ref|YP_001047259.1| - 1.4e-12 47.8 0.2 2.7e-12 46.9 0.2 1.5 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|126179294|ref|YP_001047259.1| - 4.7e-10 39.5 0.0 1.8e-09 37.6 0.0 2.0 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|126179294|ref|YP_001047259.1| - 4.8e-08 33.5 0.0 1.1e-07 32.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|126179294|ref|YP_001047259.1| - 4.6e-05 23.6 0.0 0.00012 22.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 gi|126179294|ref|YP_001047259.1| - 0.00089 19.4 0.0 0.0028 17.8 0.0 1.9 1 1 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|126179294|ref|YP_001047259.1| - 0.0033 17.7 0.0 0.0081 16.4 0.0 1.7 1 0 0 1 1 1 1 PAS fold HisKA_4TM PF16926.5 gi|126179294|ref|YP_001047259.1| - 0.0033 17.0 0.1 0.0033 17.0 0.1 2.2 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase HATPase_c_5 PF14501.6 gi|126179294|ref|YP_001047259.1| - 0.0092 15.9 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.7 gi|126179294|ref|YP_001047259.1| - 0.24 11.5 1.4 0.53 10.4 0.0 2.3 2 0 0 2 2 2 0 PAS domain NADH-u_ox-rdase PF10785.9 gi|126179294|ref|YP_001047259.1| - 0.91 10.3 4.0 2.3 8.9 0.1 3.1 2 1 0 2 2 2 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit DUF5336 PF17270.2 gi|126179294|ref|YP_001047259.1| - 1.9 8.1 9.5 0.13 11.9 2.3 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5336) PAS_4 PF08448.10 gi|126179295|ref|YP_001047260.1| - 1.4e-44 150.8 9.9 1.7e-11 44.3 0.0 5.6 5 0 0 5 5 5 5 PAS fold PAS PF00989.25 gi|126179295|ref|YP_001047260.1| - 6.6e-42 142.1 0.1 9.1e-15 54.6 0.0 5.5 5 1 0 5 5 5 4 PAS fold PAS_9 PF13426.7 gi|126179295|ref|YP_001047260.1| - 2.1e-39 134.0 0.0 3.4e-14 52.9 0.0 5.5 5 0 0 5 5 5 4 PAS domain PAS_3 PF08447.12 gi|126179295|ref|YP_001047260.1| - 6.4e-33 112.9 0.4 6.9e-10 39.1 0.0 5.2 5 0 0 5 5 5 3 PAS fold PAS_8 PF13188.7 gi|126179295|ref|YP_001047260.1| - 1.4e-30 104.8 0.1 9.1e-11 41.5 0.0 4.8 4 0 0 4 4 4 4 PAS domain PAS_7 PF12860.7 gi|126179295|ref|YP_001047260.1| - 5.3e-07 29.8 1.9 0.018 15.2 0.0 5.6 6 1 0 6 6 6 1 PAS fold HisKA PF00512.25 gi|126179295|ref|YP_001047260.1| - 0.00055 19.9 0.1 0.002 18.1 0.1 2.1 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_11 PF14598.6 gi|126179295|ref|YP_001047260.1| - 0.19 11.9 0.0 0.42 10.7 0.0 1.5 1 0 0 1 1 1 0 PAS domain E1-E2_ATPase PF00122.20 gi|126179296|ref|YP_001047261.1| - 7.8e-52 175.4 0.6 7.8e-52 175.4 0.6 2.3 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|126179296|ref|YP_001047261.1| - 6.2e-41 141.0 2.2 6.2e-41 141.0 2.2 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|126179296|ref|YP_001047261.1| - 0.00025 21.5 0.9 0.0012 19.3 0.1 2.4 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|126179296|ref|YP_001047261.1| - 0.0063 16.3 1.9 0.0084 15.9 0.8 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase GerE PF00196.19 gi|126179296|ref|YP_001047261.1| - 0.025 14.1 0.0 5.2 6.7 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family LAL_C2 PF18603.1 gi|126179296|ref|YP_001047261.1| - 2.8 8.2 8.0 0.24 11.6 0.4 3.1 3 0 0 3 3 3 0 L-amino acid ligase C-terminal domain 2 Cupin_2 PF07883.11 gi|126179297|ref|YP_001047262.1| - 1.1e-18 66.7 0.0 5.1e-10 38.9 0.0 2.3 2 0 0 2 2 2 2 Cupin domain AraC_binding PF02311.19 gi|126179297|ref|YP_001047262.1| - 1.9e-09 37.5 0.0 2.6e-07 30.6 0.0 2.1 2 0 0 2 2 2 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|126179297|ref|YP_001047262.1| - 4.5e-09 35.9 0.1 0.0036 17.0 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF861) Cupin_1 PF00190.22 gi|126179297|ref|YP_001047262.1| - 1.3e-05 24.8 0.0 0.0002 21.0 0.0 2.2 2 0 0 2 2 2 1 Cupin Cupin_6 PF12852.7 gi|126179297|ref|YP_001047262.1| - 0.00022 21.0 0.0 0.0085 15.8 0.1 2.2 2 0 0 2 2 2 1 Cupin EutQ PF06249.12 gi|126179297|ref|YP_001047262.1| - 0.00039 20.2 0.0 0.11 12.3 0.0 2.1 2 0 0 2 2 2 2 Ethanolamine utilisation protein EutQ MannoseP_isomer PF01050.18 gi|126179297|ref|YP_001047262.1| - 0.0015 18.5 0.0 0.0032 17.4 0.0 1.5 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding_2 PF14525.6 gi|126179297|ref|YP_001047262.1| - 0.0056 16.4 0.1 0.086 12.5 0.1 2.3 2 1 0 2 2 2 1 AraC-binding-like domain DMSP_lyase PF16867.5 gi|126179297|ref|YP_001047262.1| - 0.049 13.3 0.0 0.095 12.3 0.0 1.4 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase PAS PF00989.25 gi|126179298|ref|YP_001047263.1| - 3.4e-27 94.7 0.1 1.7e-13 50.5 0.1 2.9 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|126179298|ref|YP_001047263.1| - 1.7e-26 92.5 0.0 2e-12 47.3 0.0 3.1 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 gi|126179298|ref|YP_001047263.1| - 2.5e-23 82.4 1.2 7.1e-12 45.6 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|126179298|ref|YP_001047263.1| - 1.1e-18 66.7 1.6 3.2e-08 33.4 0.1 3.9 4 0 0 4 4 4 2 PAS domain HATPase_c PF02518.26 gi|126179298|ref|YP_001047263.1| - 2.9e-18 66.4 0.0 7.3e-18 65.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|126179298|ref|YP_001047263.1| - 1.9e-11 44.4 0.1 5.3e-11 43.0 0.1 1.8 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|126179298|ref|YP_001047263.1| - 2.4e-10 40.6 0.0 0.00014 22.0 0.0 3.5 3 1 0 3 3 3 2 PAS fold GAF PF01590.26 gi|126179298|ref|YP_001047263.1| - 5.7e-10 39.9 0.0 1.3e-09 38.7 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|126179298|ref|YP_001047263.1| - 7.4e-07 29.6 0.0 6e-06 26.6 0.0 2.3 1 1 0 1 1 1 1 GAF domain PAS_3 PF08447.12 gi|126179298|ref|YP_001047263.1| - 1.6e-06 28.3 0.0 0.023 15.0 0.0 3.4 4 0 0 4 4 3 2 PAS fold HATPase_c_2 PF13581.6 gi|126179298|ref|YP_001047263.1| - 0.00075 19.5 0.0 0.0017 18.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.6 gi|126179298|ref|YP_001047263.1| - 0.19 12.3 0.0 1.9 9.1 0.0 2.5 2 0 0 2 2 2 0 PAS domain E1-E2_ATPase PF00122.20 gi|126179299|ref|YP_001047264.1| - 1.2e-51 174.9 0.7 1.2e-51 174.9 0.7 2.1 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|126179299|ref|YP_001047264.1| - 1.5e-41 143.0 2.1 1.7e-41 142.8 1.0 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|126179299|ref|YP_001047264.1| - 6.5e-05 23.4 0.1 0.00022 21.7 0.1 1.9 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|126179299|ref|YP_001047264.1| - 0.00051 19.9 0.0 0.0058 16.4 0.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Aa_trans PF01490.18 gi|126179299|ref|YP_001047264.1| - 0.02 13.6 0.1 0.037 12.8 0.1 1.4 1 0 0 1 1 1 0 Transmembrane amino acid transporter protein PKD PF00801.20 gi|126179300|ref|YP_001047265.1| - 4.4e-05 23.3 3.8 0.00016 21.5 3.8 2.1 1 1 0 1 1 1 1 PKD domain Filamin PF00630.19 gi|126179300|ref|YP_001047265.1| - 0.027 15.3 0.1 0.1 13.4 0.0 1.9 1 1 1 2 2 2 0 Filamin/ABP280 repeat Y_Y_Y PF07495.13 gi|126179300|ref|YP_001047265.1| - 0.053 13.5 0.0 0.094 12.7 0.0 1.4 1 0 0 1 1 1 0 Y_Y_Y domain Wzt_C PF14524.6 gi|126179300|ref|YP_001047265.1| - 0.091 12.8 0.1 0.35 10.9 0.0 2.0 1 1 1 2 2 2 0 Wzt C-terminal domain PemK_toxin PF02452.17 gi|126179301|ref|YP_001047266.1| - 1e-11 45.2 0.0 1.2e-11 45.0 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system PAS_4 PF08448.10 gi|126179302|ref|YP_001047267.1| - 9e-34 116.0 1.7 3.1e-16 59.6 0.2 3.8 4 0 0 4 4 4 3 PAS fold PAS PF00989.25 gi|126179302|ref|YP_001047267.1| - 5e-20 71.6 1.3 6.4e-09 35.8 0.0 4.3 4 1 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|126179302|ref|YP_001047267.1| - 5.2e-20 71.6 0.0 4.7e-08 33.2 0.0 4.0 4 0 0 4 4 4 3 PAS domain PAS_8 PF13188.7 gi|126179302|ref|YP_001047267.1| - 1.4e-12 47.3 1.1 6e-05 23.0 0.1 3.9 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.12 gi|126179302|ref|YP_001047267.1| - 2.7e-12 46.8 0.0 2.2e-09 37.5 0.0 3.4 3 0 0 3 3 3 1 PAS fold HisKA PF00512.25 gi|126179302|ref|YP_001047267.1| - 5e-05 23.3 0.4 0.00061 19.8 0.1 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.6 gi|126179302|ref|YP_001047267.1| - 0.00026 21.5 0.0 2.7 8.6 0.0 3.3 3 0 0 3 3 3 2 PAS domain Nitroreductase PF00881.24 gi|126179303|ref|YP_001047268.1| - 4e-36 124.6 0.0 4.7e-36 124.4 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|126179303|ref|YP_001047268.1| - 8.9e-14 51.6 0.0 3.5e-05 23.5 0.0 3.1 2 1 1 3 3 3 3 Putative TM nitroreductase Trypsin_2 PF13365.6 gi|126179304|ref|YP_001047269.1| - 1.3e-32 113.7 2.2 2.9e-32 112.6 2.2 1.6 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_6 PF17820.1 gi|126179304|ref|YP_001047269.1| - 4.5e-10 39.2 0.5 1.3e-09 37.8 0.1 2.0 2 0 0 2 2 2 1 PDZ domain PDZ_2 PF13180.6 gi|126179304|ref|YP_001047269.1| - 2e-09 37.6 0.0 8.3e-09 35.7 0.0 2.0 2 0 0 2 2 2 1 PDZ domain Trypsin PF00089.26 gi|126179304|ref|YP_001047269.1| - 3.9e-09 36.7 0.1 2.4e-08 34.1 0.1 2.0 1 1 0 1 1 1 1 Trypsin PDZ PF00595.24 gi|126179304|ref|YP_001047269.1| - 3.7e-05 24.0 0.0 0.00013 22.3 0.0 1.9 2 0 0 2 2 2 1 PDZ domain Peptidase_S46 PF10459.9 gi|126179304|ref|YP_001047269.1| - 0.00046 19.0 0.8 0.24 10.0 0.0 2.1 2 0 0 2 2 2 2 Peptidase S46 GRASP55_65 PF04495.14 gi|126179304|ref|YP_001047269.1| - 0.023 15.0 0.0 0.061 13.6 0.0 1.7 2 0 0 2 2 2 0 GRASP55/65 PDZ-like domain CysA_C_terminal PF17850.1 gi|126179304|ref|YP_001047269.1| - 0.69 10.5 4.6 1.6 9.4 0.2 3.4 3 0 0 3 3 3 0 CysA C-terminal regulatory domain GDPD PF03009.17 gi|126179305|ref|YP_001047270.1| - 9e-34 117.4 0.0 1.7e-31 109.9 0.0 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family DUF2795 PF11387.8 gi|126179306|ref|YP_001047271.1| - 1.1e-13 51.2 0.0 1.9e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2795) SBP_bac_3 PF00497.20 gi|126179307|ref|YP_001047272.1| - 3.7e-61 206.4 0.4 4.2e-61 206.3 0.4 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|126179307|ref|YP_001047272.1| - 3e-07 30.6 0.0 4e-06 27.0 0.0 2.3 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site Phosphonate-bd PF12974.7 gi|126179307|ref|YP_001047272.1| - 0.007 16.0 0.0 0.045 13.4 0.0 1.9 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein EamA PF00892.20 gi|126179308|ref|YP_001047273.1| - 3.9e-13 49.7 29.8 1.7e-06 28.2 5.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family Tetraspanin PF00335.20 gi|126179308|ref|YP_001047273.1| - 0.065 12.9 0.2 0.065 12.9 0.2 1.7 2 0 0 2 2 2 0 Tetraspanin family TPT PF03151.16 gi|126179308|ref|YP_001047273.1| - 0.28 10.5 3.0 0.3 10.4 0.5 1.9 2 0 0 2 2 2 0 Triose-phosphate Transporter family BPD_transp_1 PF00528.22 gi|126179310|ref|YP_001047275.1| - 2.8e-22 79.4 15.8 2.8e-22 79.4 15.8 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|126179311|ref|YP_001047276.1| - 4.9e-35 121.0 0.0 6.5e-35 120.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126179311|ref|YP_001047276.1| - 2.4e-14 53.9 0.0 2e-08 34.4 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126179311|ref|YP_001047276.1| - 4e-05 23.1 0.0 0.0031 17.0 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|126179311|ref|YP_001047276.1| - 4.4e-05 23.9 0.0 0.00011 22.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|126179311|ref|YP_001047276.1| - 0.00022 20.9 0.0 0.00042 20.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|126179311|ref|YP_001047276.1| - 0.00028 20.8 0.0 0.00061 19.7 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|126179311|ref|YP_001047276.1| - 0.0016 18.3 0.0 0.95 9.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|126179311|ref|YP_001047276.1| - 0.0025 18.3 0.0 0.027 14.9 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|126179311|ref|YP_001047276.1| - 0.0064 17.0 0.1 0.012 16.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|126179311|ref|YP_001047276.1| - 0.0065 15.3 0.3 1.1 8.0 0.1 2.8 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_28 PF13521.6 gi|126179311|ref|YP_001047276.1| - 0.0068 16.7 0.0 0.03 14.6 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|126179311|ref|YP_001047276.1| - 0.0088 15.8 0.2 0.046 13.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|126179311|ref|YP_001047276.1| - 0.013 14.9 0.0 0.04 13.3 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 gi|126179311|ref|YP_001047276.1| - 0.013 15.7 0.2 0.22 11.8 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 gi|126179311|ref|YP_001047276.1| - 0.014 15.6 0.2 0.043 14.1 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|126179311|ref|YP_001047276.1| - 0.038 12.7 0.0 1.7 7.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|126179311|ref|YP_001047276.1| - 0.048 13.8 0.1 0.07 13.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|126179311|ref|YP_001047276.1| - 0.051 13.3 0.0 0.38 10.5 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_5 PF07728.14 gi|126179311|ref|YP_001047276.1| - 0.12 12.3 0.0 0.36 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|126179311|ref|YP_001047276.1| - 0.16 11.5 0.7 0.7 9.4 0.7 2.1 1 1 0 1 1 1 0 AAA domain Peripla_BP_2 PF01497.18 gi|126179311|ref|YP_001047276.1| - 0.17 11.4 0.0 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein KdpD PF02702.17 gi|126179311|ref|YP_001047276.1| - 0.27 10.7 1.1 3.8 6.9 0.1 2.9 2 1 1 3 3 3 0 Osmosensitive K+ channel His kinase sensor domain BPD_transp_1 PF00528.22 gi|126179312|ref|YP_001047277.1| - 1.6e-15 57.3 17.6 1.6e-15 57.3 17.6 1.6 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component DeoC PF01791.9 gi|126179313|ref|YP_001047278.1| - 7.6e-46 156.6 0.0 9.2e-46 156.4 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase PFK PF00365.20 gi|126179314|ref|YP_001047279.1| - 1.9e-111 371.9 1.8 2.3e-111 371.7 1.8 1.1 1 0 0 1 1 1 1 Phosphofructokinase NRD1_2 PF01995.16 gi|126179314|ref|YP_001047279.1| - 0.00078 18.8 0.0 0.0016 17.8 0.0 1.4 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 NAD_kinase PF01513.21 gi|126179314|ref|YP_001047279.1| - 0.016 14.5 0.4 0.023 13.9 0.4 1.3 1 0 0 1 1 1 0 ATP-NAD kinase Peripla_BP_4 PF13407.6 gi|126179314|ref|YP_001047279.1| - 0.084 12.4 0.1 0.32 10.5 0.0 2.0 2 0 0 2 2 2 0 Periplasmic binding protein domain SPOR PF05036.13 gi|126179314|ref|YP_001047279.1| - 0.15 12.4 0.0 1.3 9.5 0.0 2.2 1 1 1 2 2 2 0 Sporulation related domain DUF5518 PF17647.1 gi|126179315|ref|YP_001047280.1| - 3.4e-18 65.9 48.8 1.7e-10 41.0 19.0 2.3 2 0 0 2 2 2 2 Family of unknown function (DUF5518) CarS-like PF01864.17 gi|126179315|ref|YP_001047280.1| - 0.013 15.5 3.6 0.013 15.5 3.6 2.5 2 1 1 3 3 3 0 CDP-archaeol synthase SDH_alpha PF03313.15 gi|126179315|ref|YP_001047280.1| - 0.049 13.3 1.6 0.08 12.6 1.6 1.3 1 0 0 1 1 1 0 Serine dehydratase alpha chain TPPK_C PF12555.8 gi|126179315|ref|YP_001047280.1| - 0.18 11.9 0.2 0.18 11.9 0.2 3.7 3 1 0 3 3 3 0 Thiamine pyrophosphokinase C terminal DUF5518 PF17647.1 gi|126179316|ref|YP_001047281.1| - 7.4e-21 74.5 48.7 9.6e-15 54.8 17.1 2.1 2 0 0 2 2 2 2 Family of unknown function (DUF5518) ABC_membrane PF00664.23 gi|126179317|ref|YP_001047282.1| - 6.5e-43 147.3 9.5 1e-42 146.7 9.5 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|126179317|ref|YP_001047282.1| - 3.9e-35 121.3 0.0 8.6e-35 120.2 0.0 1.6 2 0 0 2 2 1 1 ABC transporter SMC_N PF02463.19 gi|126179317|ref|YP_001047282.1| - 1.1e-07 31.6 0.2 1.3e-05 24.8 0.0 2.6 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|126179317|ref|YP_001047282.1| - 7.4e-06 26.0 0.9 0.0091 15.8 0.2 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Zeta_toxin PF06414.12 gi|126179317|ref|YP_001047282.1| - 0.00032 20.0 0.0 0.00058 19.2 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 gi|126179317|ref|YP_001047282.1| - 0.00041 20.8 0.4 0.0011 19.4 0.1 1.9 2 1 0 2 2 1 1 AAA ATPase domain DUF87 PF01935.17 gi|126179317|ref|YP_001047282.1| - 0.00082 19.5 0.0 0.0024 18.0 0.0 1.7 2 0 0 2 2 2 1 Helicase HerA, central domain DEAD PF00270.29 gi|126179317|ref|YP_001047282.1| - 0.0016 18.2 0.5 0.0095 15.7 0.2 2.2 2 1 0 2 2 2 1 DEAD/DEAH box helicase MMR_HSR1 PF01926.23 gi|126179317|ref|YP_001047282.1| - 0.0052 16.8 0.0 0.015 15.3 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|126179317|ref|YP_001047282.1| - 0.006 16.9 0.2 0.026 14.8 0.2 2.0 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|126179317|ref|YP_001047282.1| - 0.008 15.3 1.4 0.1 11.6 0.0 2.7 3 0 0 3 3 3 1 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|126179317|ref|YP_001047282.1| - 0.015 15.2 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase TsaE PF02367.17 gi|126179317|ref|YP_001047282.1| - 0.034 14.2 0.0 0.064 13.3 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 gi|126179317|ref|YP_001047282.1| - 0.038 13.2 0.0 0.066 12.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|126179317|ref|YP_001047282.1| - 0.04 13.8 0.2 0.57 10.1 0.0 2.4 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.6 gi|126179317|ref|YP_001047282.1| - 0.042 13.6 0.0 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|126179317|ref|YP_001047282.1| - 0.054 13.3 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|126179317|ref|YP_001047282.1| - 0.056 13.9 0.0 0.1 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|126179317|ref|YP_001047282.1| - 0.1 12.1 0.0 0.26 10.8 0.0 1.6 2 0 0 2 2 1 0 P-loop containing dynein motor region NTPase_1 PF03266.15 gi|126179317|ref|YP_001047282.1| - 0.12 12.3 0.6 1.2 9.0 0.2 2.2 2 0 0 2 2 2 0 NTPase cobW PF02492.19 gi|126179317|ref|YP_001047282.1| - 0.12 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF2178 PF09946.9 gi|126179318|ref|YP_001047283.1| - 0.44 10.7 4.2 0.51 10.5 4.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2178) YdjM PF04307.14 gi|126179319|ref|YP_001047284.1| - 6.3e-20 71.2 6.8 6.3e-20 71.2 6.8 1.8 1 1 1 2 2 2 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|126179319|ref|YP_001047284.1| - 0.095 12.7 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Zinc dependent phospholipase C Arch_flagellin PF01917.16 gi|126179320|ref|YP_001047285.1| - 1.1e-35 123.3 0.1 1.2e-35 123.1 0.1 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|126179321|ref|YP_001047286.1| - 5.1e-24 85.3 2.2 5.8e-24 85.1 2.2 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Tad PF13400.6 gi|126179321|ref|YP_001047286.1| - 0.018 15.3 2.4 0.052 13.9 0.9 2.2 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like Cupin_3 PF05899.12 gi|126179321|ref|YP_001047286.1| - 0.035 13.8 1.0 2.4 7.9 0.2 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF861) DUF1616 PF07760.11 gi|126179322|ref|YP_001047287.1| - 2.3e-102 342.4 0.6 2.6e-102 342.2 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) BPD_transp_2 PF02653.16 gi|126179322|ref|YP_001047287.1| - 0.13 11.4 8.5 0.2 10.8 8.5 1.4 1 0 0 1 1 1 0 Branched-chain amino acid transport system / permease component DUF872 PF05915.12 gi|126179322|ref|YP_001047287.1| - 0.19 11.9 1.6 7.2 6.8 0.1 2.4 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF4395 PF14340.6 gi|126179322|ref|YP_001047287.1| - 2.3 8.6 9.0 1.9 8.8 2.7 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4395) FrhB_FdhB_C PF04432.13 gi|126179324|ref|YP_001047289.1| - 2.6e-37 128.0 0.2 2.6e-37 128.0 0.2 1.8 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|126179324|ref|YP_001047289.1| - 6.6e-22 77.5 0.1 1.2e-21 76.6 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_17 PF13534.6 gi|126179324|ref|YP_001047289.1| - 4.3e-05 24.0 19.6 0.00026 21.5 17.0 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126179324|ref|YP_001047289.1| - 0.00033 20.8 18.2 0.0019 18.3 15.6 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|126179324|ref|YP_001047289.1| - 0.00041 20.0 20.3 0.015 15.1 3.7 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|126179324|ref|YP_001047289.1| - 0.0053 17.2 19.1 0.025 15.0 0.8 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126179324|ref|YP_001047289.1| - 0.014 15.5 2.9 0.014 15.5 2.9 3.6 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126179324|ref|YP_001047289.1| - 0.014 15.9 20.8 0.056 14.0 18.8 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126179324|ref|YP_001047289.1| - 0.021 14.9 16.9 0.2 11.8 1.0 3.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126179324|ref|YP_001047289.1| - 0.41 10.9 25.1 0.091 12.9 2.3 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126179324|ref|YP_001047289.1| - 0.6 10.3 24.8 0.17 12.0 3.9 3.2 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|126179324|ref|YP_001047289.1| - 1.3 10.0 20.8 1.6 9.6 8.8 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|126179324|ref|YP_001047289.1| - 2.8 8.2 12.5 2.4 8.4 1.4 3.2 3 0 0 3 3 3 0 4Fe-4S dicluster domain Lipoprotein_15 PF03640.15 gi|126179324|ref|YP_001047289.1| - 5.9 6.5 5.2 0.68 9.5 0.2 2.1 2 0 0 2 2 2 0 Secreted repeat of unknown function Fer4_13 PF13370.6 gi|126179324|ref|YP_001047289.1| - 7.8 7.1 18.4 5.3 7.7 6.4 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Molybdopterin PF00384.22 gi|126179325|ref|YP_001047290.1| - 1.6e-89 300.8 0.0 2e-89 300.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|126179325|ref|YP_001047290.1| - 8.4e-32 109.5 0.0 1.7e-31 108.5 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|126179325|ref|YP_001047290.1| - 3.6e-20 71.7 2.2 6.6e-20 70.9 2.2 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Peptidase_C78 PF07910.13 gi|126179325|ref|YP_001047290.1| - 0.0013 18.3 0.0 0.1 12.1 0.0 2.3 2 0 0 2 2 2 1 Peptidase family C78 DUF4358 PF14270.6 gi|126179325|ref|YP_001047290.1| - 0.0027 18.0 0.3 0.016 15.5 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4358) Molybdopterin_N PF18364.1 gi|126179325|ref|YP_001047290.1| - 0.018 15.0 0.1 0.057 13.5 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin oxidoreductase N-terminal domain FrhB_FdhB_C PF04432.13 gi|126179326|ref|YP_001047291.1| - 6.6e-33 113.7 0.7 1e-32 113.1 0.0 1.6 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|126179326|ref|YP_001047291.1| - 1.2e-20 73.4 0.1 2.6e-20 72.4 0.1 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_9 PF13187.6 gi|126179326|ref|YP_001047291.1| - 1.2e-07 31.8 8.5 1.2e-07 31.8 8.5 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126179326|ref|YP_001047291.1| - 5.5e-07 29.6 11.2 0.00062 19.8 0.2 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126179326|ref|YP_001047291.1| - 7.9e-07 29.5 8.6 7.9e-07 29.5 8.6 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126179326|ref|YP_001047291.1| - 1.5e-06 28.7 11.5 1.8e-06 28.4 9.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126179326|ref|YP_001047291.1| - 3.9e-06 27.2 7.4 3.9e-06 27.2 7.4 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|126179326|ref|YP_001047291.1| - 6e-06 25.8 20.4 9.5e-05 22.0 2.6 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|126179326|ref|YP_001047291.1| - 0.00019 21.3 16.8 0.0063 16.5 1.3 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|126179326|ref|YP_001047291.1| - 0.00054 20.9 11.9 0.00071 20.5 8.3 2.6 3 0 0 3 3 2 1 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|126179326|ref|YP_001047291.1| - 0.0023 18.4 11.3 0.26 11.9 1.2 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|126179326|ref|YP_001047291.1| - 0.0023 18.6 2.5 0.66 10.7 0.1 2.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_6 PF12837.7 gi|126179326|ref|YP_001047291.1| - 0.0061 16.6 22.2 0.0087 16.1 2.5 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|126179326|ref|YP_001047291.1| - 0.01 16.3 3.4 0.01 16.3 3.4 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|126179326|ref|YP_001047291.1| - 0.013 16.3 8.8 1 10.2 0.5 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|126179326|ref|YP_001047291.1| - 0.17 12.1 13.7 1.3 9.3 1.3 3.0 2 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126179326|ref|YP_001047291.1| - 0.78 9.9 19.3 2 8.6 15.6 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|126179327|ref|YP_001047292.1| - 1.1e-86 291.5 0.1 1.4e-86 291.2 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|126179327|ref|YP_001047292.1| - 1.1e-32 112.4 0.0 2.1e-32 111.4 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|126179327|ref|YP_001047292.1| - 2.5e-19 69.0 1.3 4.6e-19 68.2 1.3 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Lar_restr_allev PF14354.6 gi|126179328|ref|YP_001047293.1| - 0.0015 18.9 0.3 0.0037 17.6 0.3 1.7 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|126179328|ref|YP_001047293.1| - 0.035 14.1 0.1 0.081 12.9 0.1 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Toxin-deaminase PF14424.6 gi|126179328|ref|YP_001047293.1| - 0.14 12.3 0.1 5.2 7.2 0.0 2.1 1 1 1 2 2 2 0 The BURPS668_1122 family of deaminases zf-ISL3 PF14690.6 gi|126179328|ref|YP_001047293.1| - 0.43 11.3 2.6 1.1 9.9 2.6 1.8 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Hydantoinase_A PF01968.18 gi|126179329|ref|YP_001047294.1| - 5.1e-13 48.9 0.0 1e-12 48.0 0.0 1.5 1 1 0 1 1 1 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|126179329|ref|YP_001047294.1| - 0.042 12.5 0.0 0.064 11.8 0.0 1.3 1 0 0 1 1 1 0 MutL protein ATP-grasp_3 PF02655.14 gi|126179330|ref|YP_001047295.1| - 3.3e-29 102.0 0.0 1.2e-28 100.1 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain preATP-grasp_3 PF18301.1 gi|126179330|ref|YP_001047295.1| - 0.00067 19.9 0.0 0.081 13.2 0.0 2.4 1 1 1 2 2 2 2 pre ATP-grasp 3 domain Dala_Dala_lig_C PF07478.13 gi|126179330|ref|YP_001047295.1| - 0.0007 19.2 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|126179330|ref|YP_001047295.1| - 0.088 12.6 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon SurE PF01975.17 gi|126179331|ref|YP_001047296.1| - 1.4e-51 175.0 0.1 1.7e-51 174.8 0.1 1.1 1 0 0 1 1 1 1 Survival protein SurE Rib_5-P_isom_A PF06026.14 gi|126179332|ref|YP_001047297.1| - 8e-61 204.6 0.0 9.5e-61 204.4 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|126179332|ref|YP_001047297.1| - 4.8e-06 26.6 0.0 0.00066 19.6 0.0 2.2 2 0 0 2 2 2 2 DeoR C terminal sensor domain TrmB PF01978.19 gi|126179333|ref|YP_001047298.1| - 6.5e-05 22.7 0.0 0.0001 22.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|126179333|ref|YP_001047298.1| - 0.0037 17.1 0.0 0.0056 16.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|126179333|ref|YP_001047298.1| - 0.0084 16.0 0.0 0.044 13.7 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.17 gi|126179333|ref|YP_001047298.1| - 0.012 15.5 1.5 0.016 15.0 1.5 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_34 PF13601.6 gi|126179333|ref|YP_001047298.1| - 0.014 15.6 0.0 0.024 14.8 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.14 gi|126179333|ref|YP_001047298.1| - 0.099 12.6 0.1 0.46 10.5 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family TBP PF00352.21 gi|126179334|ref|YP_001047299.1| - 1.6e-54 181.8 0.0 1.4e-27 95.4 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|126179334|ref|YP_001047299.1| - 1.2e-06 28.5 0.0 0.065 13.3 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) NdhS PF11623.8 gi|126179334|ref|YP_001047299.1| - 0.021 14.4 0.0 4.9 6.9 0.0 2.4 2 0 0 2 2 2 0 NAD(P)H dehydrogenase subunit S AMP-binding PF00501.28 gi|126179335|ref|YP_001047300.1| - 3.2e-97 325.8 0.1 3.8e-97 325.6 0.1 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|126179335|ref|YP_001047300.1| - 3.3e-27 95.3 0.9 1.9e-26 92.8 0.1 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|126179335|ref|YP_001047300.1| - 8.4e-19 67.2 5.5 2e-18 66.0 5.5 1.7 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Peptidase_M78 PF06114.13 gi|126179337|ref|YP_001047302.1| - 6.5e-15 55.1 0.1 1.5e-14 54.0 0.1 1.6 1 1 0 1 1 1 1 IrrE N-terminal-like domain HTH_3 PF01381.22 gi|126179337|ref|YP_001047302.1| - 2.3e-13 50.0 0.0 4.6e-13 49.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|126179337|ref|YP_001047302.1| - 7.3e-12 45.1 0.1 2.8e-11 43.3 0.1 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|126179337|ref|YP_001047302.1| - 9.3e-09 35.5 0.0 2.4e-08 34.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|126179337|ref|YP_001047302.1| - 0.0024 17.9 0.0 0.0048 17.0 0.0 1.5 1 1 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_24 PF13412.6 gi|126179337|ref|YP_001047302.1| - 0.072 12.7 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 gi|126179337|ref|YP_001047302.1| - 0.14 12.6 0.0 0.44 11.0 0.0 1.9 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 gi|126179337|ref|YP_001047302.1| - 0.16 11.9 0.5 3 7.9 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain DUF3368 PF11848.8 gi|126179338|ref|YP_001047303.1| - 3.7e-09 36.2 0.0 6.3e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) PIN PF01850.21 gi|126179338|ref|YP_001047303.1| - 0.0012 19.3 0.0 0.0017 18.8 0.0 1.2 1 0 0 1 1 1 1 PIN domain HTH_24 PF13412.6 gi|126179338|ref|YP_001047303.1| - 0.029 14.0 0.0 0.33 10.5 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding GATase_4 PF13230.6 gi|126179339|ref|YP_001047304.1| - 0.014 14.3 0.0 0.014 14.3 0.0 1.1 1 0 0 1 1 1 0 Glutamine amidotransferases class-II HEPN PF05168.14 gi|126179340|ref|YP_001047305.1| - 0.029 14.5 0.0 0.057 13.5 0.0 1.5 1 0 0 1 1 1 0 HEPN domain TFIIS_C PF01096.18 gi|126179341|ref|YP_001047306.1| - 9.5e-15 54.2 7.1 9.5e-15 54.2 7.1 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|126179341|ref|YP_001047306.1| - 3.7e-09 36.3 1.3 3.7e-09 36.3 1.3 3.0 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|126179341|ref|YP_001047306.1| - 0.00013 21.9 9.4 0.012 15.5 1.9 2.4 2 0 0 2 2 2 2 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|126179341|ref|YP_001047306.1| - 0.00045 19.7 11.3 0.083 12.4 1.1 3.6 2 2 0 2 2 2 2 TFIIB zinc-binding zinc-ribbons_6 PF07191.12 gi|126179341|ref|YP_001047306.1| - 0.018 15.0 8.6 0.035 14.1 0.4 2.5 2 1 0 2 2 2 0 zinc-ribbons OrfB_Zn_ribbon PF07282.11 gi|126179341|ref|YP_001047306.1| - 0.023 14.6 9.9 0.93 9.5 3.0 2.7 1 1 1 2 2 2 0 Putative transposase DNA-binding domain FUR PF01475.19 gi|126179341|ref|YP_001047306.1| - 0.038 14.1 0.3 0.32 11.2 0.2 2.1 2 0 0 2 2 2 0 Ferric uptake regulator family zinc_ribbon_4 PF13717.6 gi|126179341|ref|YP_001047306.1| - 0.039 13.9 19.5 0.81 9.7 0.6 4.4 4 1 1 5 5 5 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|126179341|ref|YP_001047306.1| - 0.086 12.5 13.1 0.5 10.1 1.7 3.4 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|126179341|ref|YP_001047306.1| - 0.09 12.2 14.7 0.2 11.1 4.3 3.7 3 1 0 3 3 3 0 zinc-ribbon domain TackOD1 PF18551.1 gi|126179341|ref|YP_001047306.1| - 0.1 12.2 8.5 2.3 7.9 8.5 2.5 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 DZR PF12773.7 gi|126179341|ref|YP_001047306.1| - 0.14 12.2 10.3 0.2 11.7 0.3 3.0 2 1 0 2 2 2 0 Double zinc ribbon UPF0547 PF10571.9 gi|126179341|ref|YP_001047306.1| - 0.27 11.4 0.3 0.27 11.4 0.3 3.8 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 ZF-HD_dimer PF04770.12 gi|126179341|ref|YP_001047306.1| - 0.5 10.7 8.8 10 6.5 0.3 3.2 2 1 1 3 3 3 0 ZF-HD protein dimerisation region DUF2752 PF10825.8 gi|126179341|ref|YP_001047306.1| - 0.55 10.3 0.1 0.55 10.3 0.1 3.2 4 0 0 4 4 4 0 Protein of unknown function (DUF2752) Nudix_N_2 PF14803.6 gi|126179341|ref|YP_001047306.1| - 0.68 9.9 12.0 29 4.7 0.1 3.9 3 1 0 3 3 3 0 Nudix N-terminal zf-TFIIB PF13453.6 gi|126179341|ref|YP_001047306.1| - 0.9 8.9 13.3 1.4 8.3 0.2 3.4 2 2 1 3 3 3 0 Transcription factor zinc-finger HypA PF01155.19 gi|126179341|ref|YP_001047306.1| - 1.2 9.2 9.7 0.54 10.3 0.7 2.8 1 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Anti-TRAP PF15777.5 gi|126179341|ref|YP_001047306.1| - 2.7 8.0 12.3 2.2 8.3 0.1 3.6 3 1 0 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein Zn-ribbon_8 PF09723.10 gi|126179341|ref|YP_001047306.1| - 3.4 7.9 17.1 10 6.4 0.2 4.2 3 1 0 3 3 3 0 Zinc ribbon domain zf-H2C2_2 PF13465.6 gi|126179341|ref|YP_001047306.1| - 5.9 7.5 13.3 18 6.0 0.1 4.0 4 0 0 4 4 4 0 Zinc-finger double domain Exosortase_EpsH PF09721.10 gi|126179342|ref|YP_001047307.1| - 1.1e-11 44.8 18.5 2.1e-11 43.9 18.5 1.5 1 1 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) DUF872 PF05915.12 gi|126179342|ref|YP_001047307.1| - 1.6 8.9 8.3 3.9 7.7 2.9 2.5 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) CDP-OH_P_transf PF01066.21 gi|126179343|ref|YP_001047308.1| - 1e-13 51.8 3.0 1.2e-13 51.6 0.4 2.1 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase YrhK PF14145.6 gi|126179343|ref|YP_001047308.1| - 0.21 11.5 3.4 0.18 11.7 1.3 2.0 2 0 0 2 2 2 0 YrhK-like protein Prion_bPrPp PF11587.8 gi|126179343|ref|YP_001047308.1| - 1.2 9.0 3.2 3.4 7.6 3.2 1.8 1 0 0 1 1 1 0 Major prion protein bPrPp - N terminal RibD_C PF01872.17 gi|126179344|ref|YP_001047309.1| - 3e-46 157.8 0.0 3.3e-46 157.6 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain NanE PF04131.14 gi|126179344|ref|YP_001047309.1| - 0.072 12.3 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase TruD PF01142.18 gi|126179345|ref|YP_001047310.1| - 1.1e-140 469.2 0.0 1.2e-140 469.0 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PTH2 PF01981.16 gi|126179346|ref|YP_001047311.1| - 9e-38 129.2 0.1 1e-37 129.0 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 FAD_binding_3 PF01494.19 gi|126179347|ref|YP_001047312.1| - 5e-12 45.7 0.3 4.7e-06 26.1 0.0 3.1 2 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 gi|126179347|ref|YP_001047312.1| - 7.7e-08 31.8 2.0 2.4e-06 26.8 2.0 2.6 1 1 0 1 1 1 1 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|126179347|ref|YP_001047312.1| - 0.00055 20.1 1.7 0.0012 19.0 0.4 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|126179347|ref|YP_001047312.1| - 0.0012 18.3 1.0 0.0012 18.3 1.0 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|126179347|ref|YP_001047312.1| - 0.0022 17.6 2.8 0.03 13.9 0.0 2.7 2 1 0 3 3 3 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|126179347|ref|YP_001047312.1| - 0.0067 15.7 0.3 0.052 12.8 0.4 2.0 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|126179347|ref|YP_001047312.1| - 0.015 14.1 0.1 0.17 10.7 0.0 2.4 2 1 0 2 2 2 0 Tryptophan halogenase HI0933_like PF03486.14 gi|126179347|ref|YP_001047312.1| - 0.016 13.9 0.6 0.025 13.3 0.6 1.2 1 0 0 1 1 1 0 HI0933-like protein Thi4 PF01946.17 gi|126179347|ref|YP_001047312.1| - 0.023 13.9 0.1 0.037 13.3 0.1 1.3 1 0 0 1 1 1 0 Thi4 family GIDA PF01134.22 gi|126179347|ref|YP_001047312.1| - 0.03 13.4 1.1 0.045 12.8 1.1 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|126179347|ref|YP_001047312.1| - 0.033 13.3 1.7 0.063 12.4 1.7 1.4 1 0 0 1 1 1 0 FAD binding domain HTH_8 PF02954.19 gi|126179347|ref|YP_001047312.1| - 0.038 13.8 0.1 0.12 12.2 0.1 1.9 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Pyr_redox_3 PF13738.6 gi|126179347|ref|YP_001047312.1| - 0.078 12.2 0.5 0.11 11.8 0.5 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase CbiM PF01891.16 gi|126179348|ref|YP_001047313.1| - 1.2e-53 182.1 26.0 1.3e-53 181.9 26.0 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF2109 PF09882.9 gi|126179348|ref|YP_001047313.1| - 2.5 8.2 10.4 0.62 10.1 1.8 2.9 2 1 0 2 2 2 0 Predicted membrane protein (DUF2109) PDGLE PF13190.6 gi|126179349|ref|YP_001047314.1| - 6.7e-18 64.4 1.1 9.3e-18 63.9 1.1 1.2 1 0 0 1 1 1 1 PDGLE domain Anophelin PF10731.9 gi|126179349|ref|YP_001047314.1| - 0.22 11.4 0.9 0.99 9.3 0.1 2.3 1 1 2 3 3 3 0 Thrombin inhibitor from mosquito DUF2613 PF11021.8 gi|126179349|ref|YP_001047314.1| - 5.5 7.2 7.6 2.3 8.4 0.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) ABC_tran PF00005.27 gi|126179350|ref|YP_001047315.1| - 4.1e-33 114.8 0.0 5.2e-33 114.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126179350|ref|YP_001047315.1| - 9e-14 52.0 1.0 2.9e-08 33.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126179350|ref|YP_001047315.1| - 4.5e-08 32.8 0.0 2.5e-07 30.4 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|126179350|ref|YP_001047315.1| - 0.00051 20.3 0.0 0.0036 17.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|126179350|ref|YP_001047315.1| - 0.0011 18.6 0.0 0.0023 17.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|126179350|ref|YP_001047315.1| - 0.0017 18.9 0.0 0.0025 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|126179350|ref|YP_001047315.1| - 0.015 14.8 0.0 1.5 8.2 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein Mg_chelatase PF01078.21 gi|126179350|ref|YP_001047315.1| - 0.02 14.3 0.0 0.028 13.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|126179350|ref|YP_001047315.1| - 0.022 14.5 0.0 0.046 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|126179350|ref|YP_001047315.1| - 0.03 13.5 0.0 0.03 13.5 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit IstB_IS21 PF01695.17 gi|126179350|ref|YP_001047315.1| - 0.073 12.8 0.0 0.28 10.9 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|126179350|ref|YP_001047315.1| - 0.078 12.7 0.0 0.18 11.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|126179350|ref|YP_001047315.1| - 0.081 13.2 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain MutS_V PF00488.21 gi|126179350|ref|YP_001047315.1| - 0.087 12.8 0.0 10 6.1 0.0 2.2 2 0 0 2 2 2 0 MutS domain V AAA_16 PF13191.6 gi|126179350|ref|YP_001047315.1| - 0.098 13.0 0.0 0.16 12.4 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|126179350|ref|YP_001047315.1| - 0.12 12.4 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|126179350|ref|YP_001047315.1| - 0.15 12.0 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_27 PF13514.6 gi|126179350|ref|YP_001047315.1| - 0.18 11.4 0.0 0.3 10.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain CbiQ PF02361.16 gi|126179351|ref|YP_001047316.1| - 5.1e-36 124.3 13.4 7.2e-36 123.9 13.4 1.2 1 0 0 1 1 1 1 Cobalt transport protein Mer2 PF09074.10 gi|126179352|ref|YP_001047317.1| - 0.17 11.7 0.0 0.21 11.4 0.0 1.1 1 0 0 1 1 1 0 Mer2 DNA_gyraseB PF00204.25 gi|126179353|ref|YP_001047318.1| - 1.5e-62 210.2 0.8 2.8e-62 209.3 0.4 1.6 2 0 0 2 2 2 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|126179353|ref|YP_001047318.1| - 5.6e-28 96.9 0.0 1.1e-27 95.9 0.0 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|126179353|ref|YP_001047318.1| - 2.2e-19 70.0 0.0 5.3e-19 68.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|126179353|ref|YP_001047318.1| - 1.4e-18 67.0 0.0 3.1e-18 65.9 0.0 1.6 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 gi|126179353|ref|YP_001047318.1| - 0.0077 16.1 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_topoisoIV PF00521.20 gi|126179354|ref|YP_001047319.1| - 4.4e-163 543.1 0.0 5.5e-163 542.8 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|126179354|ref|YP_001047319.1| - 1.5e-72 238.8 9.9 1.9e-14 52.9 1.5 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller DUF2178 PF09946.9 gi|126179355|ref|YP_001047320.1| - 7.9e-11 42.1 7.6 7.9e-11 42.1 7.6 1.5 2 0 0 2 2 2 1 Predicted membrane protein (DUF2178) DUF3093 PF11292.8 gi|126179355|ref|YP_001047320.1| - 4.8 7.4 5.9 2.4 8.4 3.3 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3093) HTH_3 PF01381.22 gi|126179356|ref|YP_001047321.1| - 1.1e-18 67.0 0.0 1.2e-18 66.9 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|126179356|ref|YP_001047321.1| - 5.6e-12 45.5 0.0 6.4e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|126179356|ref|YP_001047321.1| - 1.3e-09 38.2 0.0 1.6e-09 38.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|126179356|ref|YP_001047321.1| - 6e-07 29.8 0.0 6.7e-07 29.7 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.16 gi|126179356|ref|YP_001047321.1| - 0.00011 21.6 0.3 0.0015 18.0 0.1 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|126179356|ref|YP_001047321.1| - 0.0016 18.4 0.0 0.0089 16.0 0.1 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|126179356|ref|YP_001047321.1| - 0.0017 18.1 0.0 0.012 15.4 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain ROS_MUCR PF05443.11 gi|126179356|ref|YP_001047321.1| - 0.0058 16.7 0.0 0.0062 16.6 0.0 1.1 1 0 0 1 1 1 1 ROS/MUCR transcriptional regulator protein HTH_11 PF08279.12 gi|126179356|ref|YP_001047321.1| - 0.0065 16.4 0.0 0.024 14.6 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_25 PF13413.6 gi|126179356|ref|YP_001047321.1| - 0.0068 16.2 0.1 0.0087 15.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|126179356|ref|YP_001047321.1| - 0.025 14.5 0.0 0.033 14.0 0.0 1.1 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Phage_CI_repr PF07022.13 gi|126179356|ref|YP_001047321.1| - 0.097 12.8 0.0 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain ABC_tran PF00005.27 gi|126179357|ref|YP_001047322.1| - 7.8e-31 107.4 0.0 1.2e-30 106.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126179357|ref|YP_001047322.1| - 6.3e-09 36.1 0.1 7.4e-05 22.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|126179357|ref|YP_001047322.1| - 0.038 13.7 0.0 0.079 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RecA PF00154.21 gi|126179357|ref|YP_001047322.1| - 0.071 12.6 0.0 0.15 11.5 0.0 1.5 2 0 0 2 2 2 0 recA bacterial DNA recombination protein PIN_3 PF13470.6 gi|126179357|ref|YP_001047322.1| - 0.1 13.4 0.0 0.18 12.6 0.0 1.4 1 0 0 1 1 1 0 PIN domain SMC_N PF02463.19 gi|126179357|ref|YP_001047322.1| - 0.1 12.0 0.0 14 5.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|126179357|ref|YP_001047322.1| - 0.15 12.6 0.0 0.2 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.7 gi|126179358|ref|YP_001047323.1| - 3.7e-81 272.6 11.9 4.3e-81 272.4 11.9 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|126179358|ref|YP_001047323.1| - 3.2e-07 30.0 14.7 8.3e-07 28.6 14.8 1.8 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|126179358|ref|YP_001047323.1| - 1.9e-05 24.7 13.3 2.6e-05 24.2 10.9 2.3 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|126179358|ref|YP_001047323.1| - 0.00041 19.6 20.6 0.0011 18.2 20.6 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|126179358|ref|YP_001047323.1| - 0.00042 19.9 13.2 0.00042 19.9 13.2 2.3 3 1 0 3 3 3 1 ABC-2 family transporter protein DUF4271 PF14093.6 gi|126179358|ref|YP_001047323.1| - 0.11 12.4 11.8 0.19 11.6 9.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4271) Piezo_RRas_bdg PF12166.8 gi|126179358|ref|YP_001047323.1| - 0.32 10.2 1.6 4.5 6.5 0.1 2.1 2 0 0 2 2 2 0 Piezo non-specific cation channel, R-Ras-binding domain DUF3382 PF11862.8 gi|126179359|ref|YP_001047324.1| - 0.17 12.2 4.9 0.092 13.0 1.8 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3382) DUF2105 PF09878.9 gi|126179359|ref|YP_001047324.1| - 0.72 9.5 6.6 1.7 8.3 6.6 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2105) UPF0047 PF01894.17 gi|126179361|ref|YP_001047326.1| - 8.8e-33 112.9 0.0 1e-32 112.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 UPF0147 PF03685.13 gi|126179362|ref|YP_001047327.1| - 2.4e-36 123.6 2.3 2.6e-36 123.5 2.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|126179362|ref|YP_001047327.1| - 0.055 13.7 0.0 2.5 8.4 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Auto_anti-p27 PF06677.12 gi|126179363|ref|YP_001047328.1| - 3.3e-12 46.4 2.9 5e-12 45.8 2.9 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Trypan_PARP PF05887.11 gi|126179363|ref|YP_001047328.1| - 0.0025 17.8 2.9 0.0036 17.3 2.9 1.3 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) DZR PF12773.7 gi|126179363|ref|YP_001047328.1| - 0.097 12.7 0.9 0.22 11.6 0.9 1.6 1 0 0 1 1 1 0 Double zinc ribbon ERCC4 PF02732.15 gi|126179364|ref|YP_001047329.1| - 1.4e-22 80.6 0.0 2.5e-22 79.8 0.0 1.4 1 0 0 1 1 1 1 ERCC4 domain Helicase_C PF00271.31 gi|126179364|ref|YP_001047329.1| - 1.2e-21 77.1 0.0 5e-20 71.9 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|126179364|ref|YP_001047329.1| - 6.1e-16 58.7 0.0 1.2e-15 57.7 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|126179364|ref|YP_001047329.1| - 6.7e-16 58.7 0.0 1.3e-15 57.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|126179364|ref|YP_001047329.1| - 2.9e-11 43.3 0.0 7.1e-11 42.0 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|126179364|ref|YP_001047329.1| - 8.1e-10 39.2 0.0 2.6e-09 37.5 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|126179364|ref|YP_001047329.1| - 1.2e-06 28.1 0.1 3.5e-06 26.6 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif Helicase_RecD PF05127.14 gi|126179364|ref|YP_001047329.1| - 0.0091 15.9 0.0 0.38 10.6 0.0 2.4 2 0 0 2 2 2 1 Helicase 5_3_exonuc PF01367.20 gi|126179364|ref|YP_001047329.1| - 0.028 15.0 0.2 3.1 8.4 0.0 3.1 2 1 1 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold HGTP_anticodon PF03129.20 gi|126179365|ref|YP_001047330.1| - 3.8e-23 81.4 0.1 7.8e-23 80.4 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|126179365|ref|YP_001047330.1| - 9.7e-11 41.9 0.1 2e-09 37.6 0.1 2.3 2 1 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-ribbon_3 PF13248.6 gi|126179365|ref|YP_001047330.1| - 0.0037 16.6 1.8 0.26 10.7 0.0 2.5 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|126179365|ref|YP_001047330.1| - 0.099 12.7 0.1 0.19 11.7 0.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon CpXC PF14353.6 gi|126179365|ref|YP_001047330.1| - 0.13 12.3 0.1 0.3 11.1 0.1 1.6 1 0 0 1 1 1 0 CpXC protein zf-RING_7 PF02591.15 gi|126179365|ref|YP_001047330.1| - 0.19 11.9 0.5 1.1 9.5 0.1 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|126179365|ref|YP_001047330.1| - 0.24 11.5 2.0 5.2 7.3 0.2 2.6 2 0 0 2 2 2 0 Zinc ribbon domain zf-C2HC_2 PF13913.6 gi|126179365|ref|YP_001047330.1| - 3.4 7.7 5.5 1.9 8.5 0.4 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type HTH_23 PF13384.6 gi|126179366|ref|YP_001047331.1| - 1e-08 34.7 0.1 3.4e-05 23.5 0.0 2.9 3 0 0 3 3 3 2 Homeodomain-like domain GerE PF00196.19 gi|126179366|ref|YP_001047331.1| - 1.3e-06 27.8 0.1 6.4e-05 22.4 0.0 2.8 3 0 0 3 3 3 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|126179366|ref|YP_001047331.1| - 0.00019 21.1 1.6 0.071 12.8 0.1 3.1 3 1 0 3 3 3 2 Sigma-70, region 4 HTH_28 PF13518.6 gi|126179366|ref|YP_001047331.1| - 0.00019 21.5 0.0 0.0023 18.0 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|126179366|ref|YP_001047331.1| - 0.0003 20.8 0.0 0.001 19.1 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 gi|126179366|ref|YP_001047331.1| - 0.00036 20.2 0.1 0.021 14.6 0.0 3.1 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|126179366|ref|YP_001047331.1| - 0.0014 18.2 0.0 0.007 15.9 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Mga PF08280.11 gi|126179366|ref|YP_001047331.1| - 0.0014 18.6 0.6 0.2 11.7 0.0 2.5 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4 PF04545.16 gi|126179366|ref|YP_001047331.1| - 0.0015 18.0 0.8 0.42 10.2 0.0 3.0 3 1 0 3 3 3 1 Sigma-70, region 4 HTH_Tnp_1 PF01527.20 gi|126179366|ref|YP_001047331.1| - 0.0017 18.6 0.0 0.0058 16.9 0.0 1.9 2 0 0 2 2 2 1 Transposase MerR PF00376.23 gi|126179366|ref|YP_001047331.1| - 0.0037 17.0 0.0 0.0092 15.7 0.0 1.7 1 0 0 1 1 1 1 MerR family regulatory protein HTH_10 PF04967.12 gi|126179366|ref|YP_001047331.1| - 0.0043 16.8 0.2 0.1 12.4 0.0 3.1 4 0 0 4 4 4 1 HTH DNA binding domain HTH_Tnp_ISL3 PF13542.6 gi|126179366|ref|YP_001047331.1| - 0.0082 15.5 0.0 0.02 14.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 DUF3071 PF11268.8 gi|126179366|ref|YP_001047331.1| - 0.02 15.0 0.1 0.031 14.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) HTH_5 PF01022.20 gi|126179366|ref|YP_001047331.1| - 0.022 14.6 0.0 0.058 13.3 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|126179366|ref|YP_001047331.1| - 0.025 14.6 0.0 0.097 12.7 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|126179366|ref|YP_001047331.1| - 0.03 14.4 0.1 0.11 12.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix RepB PF07506.11 gi|126179366|ref|YP_001047331.1| - 0.033 14.3 1.3 5.3 7.1 0.0 2.7 1 1 0 2 2 2 0 RepB plasmid partitioning protein EDR1 PF14381.6 gi|126179366|ref|YP_001047331.1| - 0.088 12.5 0.1 8.1 6.1 0.1 2.1 2 0 0 2 2 2 0 Ethylene-responsive protein kinase Le-CTR1 HTH_17 PF12728.7 gi|126179366|ref|YP_001047331.1| - 0.09 13.0 0.1 0.28 11.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Lactamase_B_3 PF13483.6 gi|126179367|ref|YP_001047332.1| - 1.4e-28 99.8 0.0 1.8e-28 99.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|126179367|ref|YP_001047332.1| - 1.2e-24 86.9 0.1 2.5e-24 85.9 0.1 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|126179367|ref|YP_001047332.1| - 1.2e-06 28.7 1.7 2e-06 27.9 1.7 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|126179368|ref|YP_001047333.1| - 1.4e-32 112.4 0.0 2e-15 57.2 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain DUF389 PF04087.14 gi|126179370|ref|YP_001047335.1| - 1.6e-20 73.6 23.5 1.6e-20 73.6 23.5 2.1 2 1 0 2 2 2 1 Domain of unknown function (DUF389) DUF1129 PF06570.11 gi|126179370|ref|YP_001047335.1| - 0.21 11.1 13.2 0.81 9.1 3.9 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF1129) PHO4 PF01384.20 gi|126179370|ref|YP_001047335.1| - 0.58 9.2 20.0 1.8 7.5 19.9 1.7 1 1 0 1 1 1 0 Phosphate transporter family PhoU PF01895.19 gi|126179371|ref|YP_001047336.1| - 4.2e-23 81.6 3.5 1.3e-15 57.7 0.9 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|126179371|ref|YP_001047336.1| - 3.1e-10 39.7 0.1 5.6e-10 38.9 0.1 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin CitMHS PF03600.16 gi|126179372|ref|YP_001047337.1| - 8.3e-31 107.3 40.1 8.3e-31 107.3 40.1 1.7 1 1 1 2 2 2 1 Citrate transporter CLP1_P PF16575.5 gi|126179373|ref|YP_001047338.1| - 1.3e-33 116.4 0.0 2.7e-33 115.3 0.0 1.5 1 1 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MMR_HSR1 PF01926.23 gi|126179373|ref|YP_001047338.1| - 0.00086 19.4 0.0 0.0024 17.9 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|126179373|ref|YP_001047338.1| - 0.0078 16.5 0.1 0.017 15.4 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|126179373|ref|YP_001047338.1| - 0.0093 15.7 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|126179373|ref|YP_001047338.1| - 0.014 15.8 1.0 0.021 15.2 0.1 1.8 2 1 0 2 2 2 0 AAA ATPase domain PduV-EutP PF10662.9 gi|126179373|ref|YP_001047338.1| - 0.018 14.8 0.0 0.046 13.5 0.0 1.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.27 gi|126179373|ref|YP_001047338.1| - 0.018 14.6 0.0 0.052 13.1 0.0 1.6 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain ABC_tran PF00005.27 gi|126179373|ref|YP_001047338.1| - 0.062 13.8 0.0 0.1 13.1 0.0 1.3 1 0 0 1 1 1 0 ABC transporter ATP_bind_1 PF03029.17 gi|126179373|ref|YP_001047338.1| - 0.087 12.6 0.0 0.2 11.4 0.1 1.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|126179373|ref|YP_001047338.1| - 0.094 12.9 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_32 PF13654.6 gi|126179373|ref|YP_001047338.1| - 0.12 11.2 0.0 0.18 10.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|126179373|ref|YP_001047338.1| - 0.15 12.2 0.0 0.21 11.6 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_14 PF13173.6 gi|126179373|ref|YP_001047338.1| - 0.16 12.0 0.0 0.3 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATP-synt_10 PF05176.14 gi|126179374|ref|YP_001047339.1| - 1.9e-09 37.2 0.0 2.3e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 ATP10 protein Pyridox_ox_2 PF12900.7 gi|126179375|ref|YP_001047340.1| - 3.5e-22 78.9 0.0 4.1e-22 78.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Metallophos_2 PF12850.7 gi|126179377|ref|YP_001047342.1| - 4.6e-33 114.7 0.3 5.2e-33 114.6 0.3 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|126179377|ref|YP_001047342.1| - 4e-10 40.6 1.7 1.3e-08 35.6 0.1 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|126179377|ref|YP_001047342.1| - 0.0039 16.6 0.1 0.034 13.5 0.0 2.0 2 0 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily Usp PF00582.26 gi|126179379|ref|YP_001047344.1| - 1.4e-21 77.5 9.0 4.6e-10 40.1 0.6 3.5 2 2 0 2 2 2 2 Universal stress protein family Acetyltransf_10 PF13673.7 gi|126179379|ref|YP_001047344.1| - 8.9e-08 32.1 0.0 1.8e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|126179379|ref|YP_001047344.1| - 4.4e-06 26.9 0.1 9.4e-06 25.9 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|126179379|ref|YP_001047344.1| - 0.00065 20.1 0.1 0.0018 18.7 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|126179379|ref|YP_001047344.1| - 0.035 14.8 0.0 0.067 13.9 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|126179379|ref|YP_001047344.1| - 0.1 12.7 0.1 2.3 8.3 0.1 2.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DNA_photolyase PF00875.18 gi|126179379|ref|YP_001047344.1| - 0.14 12.1 0.0 0.76 9.8 0.0 2.2 2 0 0 2 2 2 0 DNA photolyase Acetyltransf_CG PF14542.6 gi|126179379|ref|YP_001047344.1| - 0.18 12.0 0.0 0.35 11.0 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase GNAT_acetyltran PF12746.7 gi|126179379|ref|YP_001047344.1| - 0.2 11.2 0.0 0.32 10.5 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase HATPase_c PF02518.26 gi|126179380|ref|YP_001047345.1| - 6e-13 49.3 0.0 1.1e-12 48.5 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|126179380|ref|YP_001047345.1| - 1.3e-09 38.2 0.0 2.2e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|126179380|ref|YP_001047345.1| - 0.00095 19.1 0.0 0.0022 17.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|126179380|ref|YP_001047345.1| - 0.064 13.3 0.0 0.17 11.9 0.0 1.7 1 0 0 1 1 1 0 PAS domain PAS_4 PF08448.10 gi|126179380|ref|YP_001047345.1| - 0.086 13.1 0.0 0.2 11.9 0.0 1.7 1 0 0 1 1 1 0 PAS fold PAS PF00989.25 gi|126179380|ref|YP_001047345.1| - 0.14 12.2 0.0 0.33 10.9 0.0 1.6 1 0 0 1 1 1 0 PAS fold DUF4118 PF13493.6 gi|126179380|ref|YP_001047345.1| - 0.29 10.9 11.2 0.6 9.9 11.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) NAD_synthase PF02540.17 gi|126179381|ref|YP_001047346.1| - 1.4e-78 263.3 0.0 1.9e-78 262.9 0.0 1.1 1 0 0 1 1 1 1 NAD synthase CN_hydrolase PF00795.22 gi|126179381|ref|YP_001047346.1| - 8.1e-15 54.9 0.0 2.5e-14 53.2 0.0 1.8 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase Asn_synthase PF00733.21 gi|126179381|ref|YP_001047346.1| - 0.00011 22.0 0.0 0.00017 21.4 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|126179381|ref|YP_001047346.1| - 0.028 13.2 0.0 0.037 12.8 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase QueC PF06508.13 gi|126179381|ref|YP_001047346.1| - 0.037 13.5 0.0 0.055 13.0 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC HhH-GPD PF00730.25 gi|126179382|ref|YP_001047347.1| - 4.5e-18 65.7 0.0 6.4e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|126179382|ref|YP_001047347.1| - 0.016 15.5 1.5 0.028 14.7 1.5 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III RQC PF09382.10 gi|126179385|ref|YP_001047350.1| - 2.3e-30 104.7 0.0 6.3e-30 103.3 0.0 1.7 1 0 0 1 1 1 1 RQC domain Helicase_C PF00271.31 gi|126179385|ref|YP_001047350.1| - 8e-20 71.3 0.0 6.7e-18 65.1 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|126179385|ref|YP_001047350.1| - 2.7e-19 69.6 0.0 4.1e-19 69.0 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase RecQ_Zn_bind PF16124.5 gi|126179385|ref|YP_001047350.1| - 2.9e-17 63.2 0.4 8.5e-17 61.6 0.4 1.9 1 0 0 1 1 1 1 RecQ zinc-binding HRDC PF00570.23 gi|126179385|ref|YP_001047350.1| - 3.3e-17 62.2 0.0 6e-17 61.4 0.0 1.5 1 0 0 1 1 1 1 HRDC domain ResIII PF04851.15 gi|126179385|ref|YP_001047350.1| - 0.0097 15.9 0.0 0.029 14.4 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Exo_endo_phos PF03372.23 gi|126179386|ref|YP_001047351.1| - 2.1e-07 30.7 0.0 2.8e-06 27.0 0.0 2.1 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Putative_PNPOx PF01243.20 gi|126179387|ref|YP_001047352.1| - 3.1e-20 72.1 0.0 4e-20 71.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|126179387|ref|YP_001047352.1| - 0.0023 17.5 0.0 0.0028 17.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like FMN_red PF03358.15 gi|126179388|ref|YP_001047353.1| - 2.9e-33 114.8 0.0 3.6e-33 114.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|126179388|ref|YP_001047353.1| - 1.3e-13 51.1 0.0 2.1e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|126179388|ref|YP_001047353.1| - 0.13 12.5 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin domain Big_6 PF17936.1 gi|126179389|ref|YP_001047354.1| - 0.0071 16.6 6.5 0.019 15.3 0.1 3.6 4 1 0 4 4 4 2 Bacterial Ig domain Radical_SAM PF04055.21 gi|126179390|ref|YP_001047355.1| - 7.7e-08 32.9 0.0 1.2e-07 32.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Saccharop_dh_N PF04455.12 gi|126179391|ref|YP_001047356.1| - 5.1e-37 126.3 0.0 1.1e-36 125.2 0.0 1.6 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|126179391|ref|YP_001047356.1| - 0.0034 17.1 0.4 0.45 10.2 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain DS PF01916.17 gi|126179391|ref|YP_001047356.1| - 0.0034 16.7 0.9 0.043 13.1 0.1 2.7 1 1 1 3 3 3 1 Deoxyhypusine synthase NTP_transf_3 PF12804.7 gi|126179392|ref|YP_001047357.1| - 2.8e-15 57.0 0.1 3.1e-15 56.9 0.1 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|126179392|ref|YP_001047357.1| - 0.017 15.0 0.0 0.029 14.3 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase NTP_transferase PF00483.23 gi|126179392|ref|YP_001047357.1| - 0.053 13.1 0.0 0.074 12.6 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyl transferase Aminotran_1_2 PF00155.21 gi|126179393|ref|YP_001047358.1| - 2.9e-40 138.6 0.0 5.1e-32 111.4 0.0 2.0 1 1 1 2 2 2 2 Aminotransferase class I and II BAT PF15915.5 gi|126179393|ref|YP_001047358.1| - 0.11 12.4 1.3 0.15 11.9 0.1 1.9 2 0 0 2 2 2 0 GAF and HTH_10 associated domain RHH_1 PF01402.21 gi|126179394|ref|YP_001047359.1| - 1.4e-07 31.2 0.2 2e-07 30.7 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|126179394|ref|YP_001047359.1| - 0.072 13.3 0.0 0.072 13.3 0.0 1.0 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family Tubulin PF00091.25 gi|126179395|ref|YP_001047360.1| - 1.1e-37 130.2 0.4 2.1e-37 129.3 0.4 1.5 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|126179395|ref|YP_001047360.1| - 9e-34 115.7 0.8 5.3e-33 113.2 0.1 2.5 2 1 0 2 2 2 1 FtsZ family, C-terminal domain AA_kinase PF00696.28 gi|126179395|ref|YP_001047360.1| - 0.024 14.2 0.2 0.057 13.0 0.2 1.6 1 0 0 1 1 1 0 Amino acid kinase family Methyltransf_15 PF09445.10 gi|126179395|ref|YP_001047360.1| - 0.13 11.9 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Sipho_Gp37 PF14594.6 gi|126179395|ref|YP_001047360.1| - 0.16 10.9 0.0 1.7 7.5 0.0 2.3 2 1 0 2 2 2 0 Siphovirus ReqiPepy6 Gp37-like protein Tubulin_2 PF13809.6 gi|126179395|ref|YP_001047360.1| - 1 8.5 8.9 3.1 6.9 0.1 2.7 1 1 1 2 2 2 0 Tubulin like BRCA-2_OB3 PF09104.10 gi|126179396|ref|YP_001047361.1| - 0.54 9.9 5.0 0.15 11.7 0.6 2.3 2 0 0 2 2 2 0 BRCA2, oligonucleotide/oligosaccharide-binding, domain 3 DUF373 PF04123.13 gi|126179397|ref|YP_001047362.1| - 3e-123 411.6 9.7 3.4e-123 411.4 9.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) EI24 PF07264.11 gi|126179397|ref|YP_001047362.1| - 0.14 12.4 15.7 0.61 10.3 15.7 2.1 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) DUF3938 PF13074.6 gi|126179397|ref|YP_001047362.1| - 0.19 12.0 12.0 1.4 9.2 0.1 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3938) Alba PF01918.21 gi|126179400|ref|YP_001047365.1| - 3.6e-18 65.2 0.3 4.5e-18 64.8 0.3 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|126179400|ref|YP_001047365.1| - 0.036 14.0 0.3 0.052 13.5 0.2 1.4 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Semialdhyde_dh PF01118.24 gi|126179401|ref|YP_001047366.1| - 1.8e-34 118.7 0.0 2.9e-34 118.1 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|126179401|ref|YP_001047366.1| - 1.4e-32 113.3 0.0 1.9e-32 112.8 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|126179401|ref|YP_001047366.1| - 0.022 14.9 0.0 0.042 14.0 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|126179401|ref|YP_001047366.1| - 0.027 14.7 0.0 0.05 13.9 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DXP_reductoisom PF02670.16 gi|126179401|ref|YP_001047366.1| - 0.073 13.8 0.0 0.15 12.8 0.0 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase NAD_binding_10 PF13460.6 gi|126179401|ref|YP_001047366.1| - 0.085 12.7 0.0 0.27 11.1 0.0 1.8 1 1 0 1 1 1 0 NAD(P)H-binding Fer4 PF00037.27 gi|126179402|ref|YP_001047367.1| - 6e-16 57.5 18.0 1.8e-08 33.8 5.7 2.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|126179402|ref|YP_001047367.1| - 1.7e-13 50.0 18.5 2.7e-07 30.4 5.4 2.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126179402|ref|YP_001047367.1| - 1.1e-11 44.7 26.0 2.5e-09 37.1 14.6 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126179402|ref|YP_001047367.1| - 1.5e-11 43.7 15.4 1.7e-06 27.8 4.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126179402|ref|YP_001047367.1| - 2.6e-11 43.5 12.7 3e-11 43.3 12.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126179402|ref|YP_001047367.1| - 3.8e-10 40.2 14.2 6.8e-10 39.4 14.2 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126179402|ref|YP_001047367.1| - 1.2e-09 39.0 11.6 1.8e-05 25.6 2.0 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|126179402|ref|YP_001047367.1| - 4.4e-09 36.3 17.0 2.4e-05 24.4 5.1 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126179402|ref|YP_001047367.1| - 1.9e-08 34.1 12.9 5e-05 23.5 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|126179402|ref|YP_001047367.1| - 1.6e-05 25.4 13.4 0.0086 16.6 2.2 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|126179402|ref|YP_001047367.1| - 4.1e-05 24.0 16.2 0.004 17.6 3.2 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|126179402|ref|YP_001047367.1| - 6.5e-05 23.3 14.5 0.0034 17.8 2.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126179402|ref|YP_001047367.1| - 9.5e-05 23.1 17.5 0.0042 17.9 5.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|126179402|ref|YP_001047367.1| - 0.00025 21.7 4.1 0.00025 21.7 4.1 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|126179402|ref|YP_001047367.1| - 0.0017 18.5 15.7 0.0091 16.2 15.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|126179402|ref|YP_001047367.1| - 0.005 17.6 10.6 0.37 11.7 0.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain DapB_C PF05173.14 gi|126179403|ref|YP_001047368.1| - 2.2e-43 147.2 0.0 3.2e-43 146.6 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|126179403|ref|YP_001047368.1| - 5.6e-27 94.3 1.2 9.2e-27 93.6 1.2 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus BON PF04972.17 gi|126179403|ref|YP_001047368.1| - 0.092 13.1 0.8 0.24 11.7 0.8 1.7 1 0 0 1 1 1 0 BON domain DUF2277 PF10041.9 gi|126179403|ref|YP_001047368.1| - 0.15 12.4 0.3 0.33 11.3 0.3 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2277) DHDPS PF00701.22 gi|126179404|ref|YP_001047369.1| - 5e-95 317.5 0.0 5.6e-95 317.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PEP_mutase PF13714.6 gi|126179404|ref|YP_001047369.1| - 0.016 14.7 0.0 0.031 13.7 0.0 1.4 1 1 0 1 1 1 0 Phosphoenolpyruvate phosphomutase Amidohydro_2 PF04909.14 gi|126179404|ref|YP_001047369.1| - 0.024 14.4 0.0 0.04 13.7 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase Inhibitor_I69 PF13734.6 gi|126179404|ref|YP_001047369.1| - 0.086 13.3 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Spi protease inhibitor Ribosomal_S17e PF00833.18 gi|126179405|ref|YP_001047370.1| - 1e-11 44.8 0.2 1e-11 44.8 0.2 1.0 1 0 0 1 1 1 1 Ribosomal S17 ThiP_synth PF10120.9 gi|126179406|ref|YP_001047371.1| - 1.9e-65 219.5 0.3 2.2e-65 219.3 0.3 1.0 1 0 0 1 1 1 1 Thiamine-phosphate synthase Herpes_LMP1 PF05297.11 gi|126179407|ref|YP_001047372.1| - 0.14 11.3 0.1 0.15 11.2 0.1 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DNA_primase_lrg PF04104.14 gi|126179408|ref|YP_001047373.1| - 2.8e-27 95.8 0.0 8.3e-27 94.2 0.0 1.8 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit PCNA_N PF00705.18 gi|126179409|ref|YP_001047374.1| - 2.6e-11 43.3 0.3 6.4e-11 42.1 0.2 1.7 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|126179409|ref|YP_001047374.1| - 0.00055 20.1 0.0 0.0013 18.9 0.0 1.7 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain DNA_pol3_beta_2 PF02767.16 gi|126179409|ref|YP_001047374.1| - 0.053 13.7 0.3 4.8 7.4 0.1 2.9 2 2 1 3 3 3 0 DNA polymerase III beta subunit, central domain Rad1 PF02144.16 gi|126179409|ref|YP_001047374.1| - 0.11 11.5 0.0 0.39 9.7 0.0 1.7 1 1 0 1 1 1 0 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|126179409|ref|YP_001047374.1| - 0.12 11.7 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Rad9 FtsJ PF01728.19 gi|126179410|ref|YP_001047375.1| - 2.5e-52 177.6 0.0 2.8e-52 177.4 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_23 PF13489.6 gi|126179410|ref|YP_001047375.1| - 2.2e-05 24.3 0.0 0.0002 21.3 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126179410|ref|YP_001047375.1| - 0.00011 22.0 0.0 0.16 11.7 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126179410|ref|YP_001047375.1| - 0.0059 17.3 0.1 0.058 14.1 0.1 2.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126179410|ref|YP_001047375.1| - 0.12 13.0 0.0 3.4 8.4 0.0 2.4 1 1 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|126179410|ref|YP_001047375.1| - 0.2 11.2 0.0 0.3 10.6 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Radical_SAM PF04055.21 gi|126179411|ref|YP_001047376.1| - 7.3e-31 107.8 0.5 1.8e-30 106.5 0.0 1.9 3 0 0 3 3 3 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|126179411|ref|YP_001047376.1| - 8.2e-19 67.8 0.3 1.8e-18 66.7 0.3 1.6 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|126179411|ref|YP_001047376.1| - 4e-06 27.1 0.0 8.6e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|126179411|ref|YP_001047376.1| - 1.4e-05 25.2 0.0 8.8e-05 22.6 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF3918 PF13056.6 gi|126179412|ref|YP_001047377.1| - 0.081 12.6 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3918) Peptidase_M20 PF01546.28 gi|126179413|ref|YP_001047378.1| - 8.4e-35 120.3 0.0 1.7e-34 119.4 0.0 1.5 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|126179413|ref|YP_001047378.1| - 1.3e-16 60.4 0.0 2.9e-16 59.3 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|126179413|ref|YP_001047378.1| - 0.00024 20.9 0.0 0.00042 20.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 Glycos_transf_2 PF00535.26 gi|126179414|ref|YP_001047379.1| - 2.1e-30 105.8 0.1 3e-30 105.3 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.14 gi|126179414|ref|YP_001047379.1| - 1.5e-27 96.2 12.2 2.7e-27 95.3 12.2 1.4 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.6 gi|126179414|ref|YP_001047379.1| - 6.3e-14 52.4 0.0 1.2e-13 51.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|126179414|ref|YP_001047379.1| - 0.00083 18.9 0.0 0.0012 18.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|126179414|ref|YP_001047379.1| - 0.0038 17.7 0.0 0.0074 16.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 PMT_2 PF13231.6 gi|126179415|ref|YP_001047380.1| - 5.4e-23 81.9 10.6 5.4e-23 81.9 10.6 2.8 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|126179415|ref|YP_001047380.1| - 9.6e-12 45.0 9.5 9.6e-12 45.0 9.5 2.4 1 1 1 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase STT3 PF02516.14 gi|126179415|ref|YP_001047380.1| - 9.2e-05 21.6 9.0 9.2e-05 21.6 9.0 2.0 2 0 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit DUF2723 PF11028.8 gi|126179415|ref|YP_001047380.1| - 0.0038 17.2 5.3 0.0038 17.2 5.3 2.5 2 1 1 3 3 3 1 Protein of unknown function (DUF2723) DUF3156 PF11354.8 gi|126179415|ref|YP_001047380.1| - 0.076 12.9 0.3 3.9 7.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3156) Orai-1 PF07856.12 gi|126179415|ref|YP_001047380.1| - 2.9 7.6 7.4 17 5.0 2.5 2.5 2 0 0 2 2 2 0 Mediator of CRAC channel activity Fic_N PF13784.6 gi|126179417|ref|YP_001047382.1| - 1.3e-28 98.9 0.0 2.7e-28 97.8 0.0 1.6 1 0 0 1 1 1 1 Fic/DOC family N-terminal Fic PF02661.18 gi|126179417|ref|YP_001047382.1| - 1.6e-18 67.4 0.0 4.8e-18 65.8 0.0 1.9 2 0 0 2 2 2 1 Fic/DOC family Rrf2 PF02082.20 gi|126179417|ref|YP_001047382.1| - 0.084 13.2 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator ParE_toxin PF05016.15 gi|126179418|ref|YP_001047383.1| - 1.5e-07 31.9 0.1 1.8e-07 31.7 0.1 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE VAPB_antitox PF02697.14 gi|126179419|ref|YP_001047384.1| - 7.6e-06 26.6 0.4 1e-05 26.2 0.4 1.4 1 1 0 1 1 1 1 Putative antitoxin RHH_1 PF01402.21 gi|126179419|ref|YP_001047384.1| - 0.085 12.8 0.5 1.5 8.9 0.1 2.4 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF4129 PF13559.6 gi|126179419|ref|YP_001047384.1| - 0.099 12.9 0.9 0.13 12.5 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) DUF3883 PF13020.6 gi|126179420|ref|YP_001047385.1| - 1.9e-19 69.5 0.2 7e-19 67.7 0.2 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) HATPase_c_3 PF13589.6 gi|126179420|ref|YP_001047385.1| - 0.00062 19.6 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF87 PF01935.17 gi|126179422|ref|YP_001047387.1| - 3.5e-10 40.4 0.0 1.2e-08 35.3 0.0 2.4 2 0 0 2 2 2 1 Helicase HerA, central domain DUF853 PF05872.12 gi|126179422|ref|YP_001047387.1| - 0.0051 15.5 0.0 0.011 14.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) MethyltransfD12 PF02086.15 gi|126179423|ref|YP_001047388.1| - 2.7e-45 155.1 0.0 3.3e-45 154.8 0.0 1.0 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase EVE PF01878.18 gi|126179424|ref|YP_001047389.1| - 8e-24 84.3 0.2 9.2e-24 84.1 0.2 1.0 1 0 0 1 1 1 1 EVE domain Dev_Cell_Death PF10539.9 gi|126179424|ref|YP_001047389.1| - 0.0019 18.1 0.0 0.0026 17.7 0.0 1.3 1 0 0 1 1 1 1 Development and cell death domain ResIII PF04851.15 gi|126179425|ref|YP_001047390.1| - 1.7e-14 54.2 0.0 3.4e-14 53.2 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|126179425|ref|YP_001047390.1| - 6.1e-07 29.4 0.0 1.3e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase SWI2_SNF2 PF18766.1 gi|126179425|ref|YP_001047390.1| - 8.8e-07 28.8 0.0 1.7e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 SWI2/SNF2 ATPase N6_N4_Mtase PF01555.18 gi|126179426|ref|YP_001047391.1| - 2.8e-32 112.3 0.0 1.2e-31 110.2 0.0 2.1 2 1 0 2 2 2 1 DNA methylase Cons_hypoth95 PF03602.15 gi|126179426|ref|YP_001047391.1| - 0.0061 16.2 0.0 0.76 9.4 0.0 2.7 2 0 0 2 2 2 2 Conserved hypothetical protein 95 TPR_17 PF13431.6 gi|126179427|ref|YP_001047392.1| - 2.2e-12 46.4 4.1 0.0011 19.2 0.0 5.6 5 0 0 5 5 5 3 Tetratricopeptide repeat NB-ARC PF00931.22 gi|126179427|ref|YP_001047392.1| - 5.8e-11 42.1 0.1 1.2e-10 41.0 0.1 1.5 1 0 0 1 1 1 1 NB-ARC domain TPR_11 PF13414.6 gi|126179427|ref|YP_001047392.1| - 2e-05 24.2 7.4 0.00045 19.8 0.0 4.8 5 1 1 6 6 6 1 TPR repeat TPR_14 PF13428.6 gi|126179427|ref|YP_001047392.1| - 0.00014 22.4 0.1 0.053 14.4 0.0 3.6 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|126179427|ref|YP_001047392.1| - 0.0075 16.3 5.8 0.35 11.1 0.1 4.7 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|126179427|ref|YP_001047392.1| - 0.0096 15.7 8.0 0.3 11.0 0.1 4.8 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|126179427|ref|YP_001047392.1| - 0.09 13.3 0.0 2.1 8.9 0.0 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|126179427|ref|YP_001047392.1| - 0.16 12.2 10.9 0.2 12.0 0.1 5.0 6 0 0 6 6 6 0 Tetratricopeptide repeat Lipase_GDSL PF00657.22 gi|126179427|ref|YP_001047392.1| - 0.18 11.7 2.2 1.2 9.1 0.6 2.7 2 1 1 3 3 3 0 GDSL-like Lipase/Acylhydrolase UvrD-helicase PF00580.21 gi|126179428|ref|YP_001047393.1| - 7.3e-46 157.1 0.1 1.3e-23 84.0 0.0 2.3 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|126179428|ref|YP_001047393.1| - 2e-33 116.2 0.0 2.5e-18 66.6 0.0 2.6 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|126179428|ref|YP_001047393.1| - 1.3e-25 90.5 0.0 2.5e-25 89.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain PDDEXK_1 PF12705.7 gi|126179428|ref|YP_001047393.1| - 1.2e-18 67.9 0.0 2.5e-18 66.9 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.6 gi|126179428|ref|YP_001047393.1| - 5.7e-09 35.7 0.0 0.00033 20.4 0.0 2.6 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 gi|126179428|ref|YP_001047393.1| - 1.5e-07 31.4 0.3 0.00026 20.8 0.1 3.2 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase Cas_Cas4 PF01930.17 gi|126179428|ref|YP_001047393.1| - 3.1e-06 27.4 0.0 8e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function DUF83 AAA_30 PF13604.6 gi|126179428|ref|YP_001047393.1| - 1.1e-05 25.2 0.0 0.042 13.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain DUF2800 PF10926.8 gi|126179428|ref|YP_001047393.1| - 0.022 14.0 0.0 0.042 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2800) DUF365 PF04033.12 gi|126179429|ref|YP_001047394.1| - 4.9e-45 151.8 0.1 6.6e-45 151.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF365) Peptidase_S24 PF00717.23 gi|126179429|ref|YP_001047394.1| - 0.0014 18.5 0.0 0.0024 17.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like zf-ACC PF17848.1 gi|126179430|ref|YP_001047395.1| - 7.5 6.7 8.2 8.1 6.6 3.0 2.7 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain UPF0175 PF03683.13 gi|126179431|ref|YP_001047396.1| - 1.7e-26 91.7 0.1 1.9e-26 91.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) Virulence_RhuM PF13310.6 gi|126179433|ref|YP_001047398.1| - 2.7e-113 377.4 6.4 3.3e-113 377.1 6.4 1.1 1 0 0 1 1 1 1 Virulence protein RhuM family HTH_Crp_2 PF13545.6 gi|126179433|ref|YP_001047398.1| - 0.00055 19.8 0.1 3.6 7.6 0.0 3.5 3 0 0 3 3 3 2 Crp-like helix-turn-helix domain DHquinase_II PF01220.19 gi|126179433|ref|YP_001047398.1| - 0.044 13.5 0.0 0.15 11.7 0.0 1.8 2 0 0 2 2 2 0 Dehydroquinase class II HIT PF01230.23 gi|126179434|ref|YP_001047399.1| - 5.9e-19 68.6 0.0 7.1e-19 68.4 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|126179434|ref|YP_001047399.1| - 1.4e-08 35.2 0.0 1.7e-08 34.9 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding GalP_UDP_tr_C PF02744.17 gi|126179434|ref|YP_001047399.1| - 0.022 14.5 0.0 0.027 14.2 0.0 1.0 1 0 0 1 1 1 0 Galactose-1-phosphate uridyl transferase, C-terminal domain DNA_processg_A PF02481.15 gi|126179435|ref|YP_001047400.1| - 7.6e-60 201.8 0.1 9.4e-60 201.4 0.1 1.1 1 0 0 1 1 1 1 DNA recombination-mediator protein A LDcluster4 PF18306.1 gi|126179435|ref|YP_001047400.1| - 2.6e-06 27.1 3.0 5.5e-06 26.0 2.9 1.4 1 1 0 1 1 1 1 SLOG cluster4 family Pribosyltran PF00156.27 gi|126179436|ref|YP_001047401.1| - 0.0033 17.0 0.0 0.0073 15.8 0.0 1.7 1 1 0 1 1 1 1 Phosphoribosyl transferase domain Ribonucleas_3_3 PF14622.6 gi|126179439|ref|YP_001047404.1| - 7.3e-22 77.9 0.0 9.2e-22 77.6 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.26 gi|126179439|ref|YP_001047404.1| - 1.6e-11 44.7 0.0 3.1e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Ribonuclease III domain HSP20 PF00011.21 gi|126179440|ref|YP_001047405.1| - 7.3e-12 45.3 0.0 8.7e-12 45.1 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|126179440|ref|YP_001047405.1| - 6.8e-07 28.8 0.1 1e-06 28.2 0.1 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|126179440|ref|YP_001047405.1| - 0.0082 16.2 2.5 0.028 14.5 0.6 2.0 1 1 1 2 2 2 1 GvpH DUF4143 PF13635.6 gi|126179441|ref|YP_001047406.1| - 3.2e-27 95.1 0.0 4.7e-27 94.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_14 PF13173.6 gi|126179441|ref|YP_001047406.1| - 7.7e-26 90.7 0.0 7.5e-25 87.5 0.0 2.3 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.6 gi|126179441|ref|YP_001047406.1| - 0.00062 20.0 0.0 0.49 10.7 0.0 2.4 1 1 1 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|126179441|ref|YP_001047406.1| - 0.0025 18.0 0.0 0.004 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|126179441|ref|YP_001047406.1| - 0.0077 16.6 0.0 0.016 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain HTH_36 PF13730.6 gi|126179441|ref|YP_001047406.1| - 0.018 15.0 0.1 0.035 14.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Fer4_6 PF12837.7 gi|126179442|ref|YP_001047407.1| - 1.2e-05 25.2 12.3 0.012 15.7 0.8 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126179442|ref|YP_001047407.1| - 5.7e-05 23.6 10.3 9.5e-05 22.9 9.7 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126179442|ref|YP_001047407.1| - 0.00081 19.5 9.5 0.0023 18.0 9.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126179442|ref|YP_001047407.1| - 0.014 16.3 13.1 0.11 13.5 1.7 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|126179442|ref|YP_001047407.1| - 0.015 16.2 9.4 0.09 13.7 9.4 2.1 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|126179442|ref|YP_001047407.1| - 0.043 14.3 13.5 0.11 13.1 1.0 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|126179442|ref|YP_001047407.1| - 0.079 12.8 10.8 0.74 9.7 1.9 2.9 2 1 0 2 2 2 0 4Fe-4S binding domain Dehalogenase PF13486.6 gi|126179442|ref|YP_001047407.1| - 0.13 11.6 0.0 0.19 11.1 0.0 1.1 1 0 0 1 1 1 0 Reductive dehalogenase subunit Fer4_10 PF13237.6 gi|126179442|ref|YP_001047407.1| - 0.62 10.2 14.4 1.2 9.3 12.4 2.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126179442|ref|YP_001047407.1| - 6.2 7.5 11.6 30 5.2 11.6 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126179442|ref|YP_001047407.1| - 7.9 6.8 20.0 4.6 7.5 3.9 3.1 3 1 0 3 3 3 0 4Fe-4S binding domain UvrD-helicase PF00580.21 gi|126179444|ref|YP_001047409.1| - 9.2e-58 196.2 0.1 4.4e-30 105.3 0.1 2.1 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|126179444|ref|YP_001047409.1| - 1.2e-28 100.5 0.0 3.4e-16 59.6 0.0 2.2 1 1 1 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|126179444|ref|YP_001047409.1| - 1e-26 94.0 0.0 3.7e-26 92.2 0.0 1.9 2 1 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.6 gi|126179444|ref|YP_001047409.1| - 1.3e-12 47.3 0.1 5.9e-05 22.8 0.0 2.6 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 gi|126179444|ref|YP_001047409.1| - 1.7e-08 34.7 0.0 6e-08 32.9 0.0 2.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_30 PF13604.6 gi|126179444|ref|YP_001047409.1| - 1.4e-07 31.4 1.5 0.0015 18.3 0.1 3.5 3 0 0 3 3 3 2 AAA domain Viral_helicase1 PF01443.18 gi|126179444|ref|YP_001047409.1| - 1.6e-06 28.1 0.9 0.43 10.3 0.0 4.1 4 0 0 4 4 4 3 Viral (Superfamily 1) RNA helicase PhoH PF02562.16 gi|126179444|ref|YP_001047409.1| - 0.00011 21.8 0.7 0.01 15.3 0.0 2.3 2 0 0 2 2 2 2 PhoH-like protein PDDEXK_1 PF12705.7 gi|126179445|ref|YP_001047410.1| - 5.3e-42 144.5 0.0 8.9e-42 143.7 0.0 1.4 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Exonuc_V_gamma PF04257.14 gi|126179445|ref|YP_001047410.1| - 1.6e-13 49.9 0.0 2.5e-06 26.0 0.0 2.1 2 0 0 2 2 2 2 Exodeoxyribonuclease V, gamma subunit DinB_2 PF12867.7 gi|126179445|ref|YP_001047410.1| - 0.17 12.4 2.6 1.2 9.6 0.7 3.0 2 1 0 2 2 2 0 DinB superfamily Gate PF07670.14 gi|126179446|ref|YP_001047411.1| - 7.8e-06 26.1 18.3 0.0011 19.2 2.8 2.7 2 2 0 2 2 2 2 Nucleoside recognition DUF4083 PF13314.6 gi|126179446|ref|YP_001047411.1| - 10 6.2 6.2 4.7 7.2 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4083) HD PF01966.22 gi|126179447|ref|YP_001047412.1| - 4.5e-17 62.4 0.1 7.5e-17 61.7 0.1 1.4 1 0 0 1 1 1 1 HD domain ALAD PF00490.21 gi|126179447|ref|YP_001047412.1| - 0.039 13.1 0.0 0.06 12.5 0.0 1.2 1 0 0 1 1 1 0 Delta-aminolevulinic acid dehydratase DNA_pol3_beta PF00712.19 gi|126179447|ref|YP_001047412.1| - 0.21 11.7 0.0 0.32 11.2 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase III beta subunit, N-terminal domain Multi_Drug_Res PF00893.19 gi|126179448|ref|YP_001047413.1| - 9.6e-28 96.7 7.0 1.1e-27 96.5 7.0 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 gi|126179448|ref|YP_001047413.1| - 0.25 11.5 12.8 0.45 10.7 12.8 1.5 1 1 0 1 1 1 0 EamA-like transporter family DUF5381 PF17353.2 gi|126179448|ref|YP_001047413.1| - 0.74 9.5 5.5 2.1 8.1 2.4 2.0 1 1 1 2 2 2 0 Family of unknown function (DUF5381) DUF3413 PF11893.8 gi|126179448|ref|YP_001047413.1| - 7.8 5.6 6.2 23 4.1 6.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF3413) Fer4_15 PF13459.6 gi|126179449|ref|YP_001047414.1| - 3.7e-20 72.4 4.5 4.1e-20 72.3 4.5 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|126179449|ref|YP_001047414.1| - 1.1e-18 67.5 3.9 1.4e-18 67.2 3.9 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_10 PF13237.6 gi|126179449|ref|YP_001047414.1| - 0.0019 18.3 4.2 0.0051 16.9 4.2 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126179449|ref|YP_001047414.1| - 0.059 14.0 1.7 0.059 14.0 1.7 2.1 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|126179449|ref|YP_001047414.1| - 0.12 12.3 9.9 0.15 11.9 2.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126179449|ref|YP_001047414.1| - 0.38 10.9 6.9 2.4 8.3 6.9 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126179449|ref|YP_001047414.1| - 1.8 8.9 8.9 0.24 11.6 3.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|126179449|ref|YP_001047414.1| - 2.7 8.2 8.9 0.58 10.3 2.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain DUF421 PF04239.12 gi|126179450|ref|YP_001047415.1| - 2.3e-11 43.4 0.0 3.3e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF421) MrpF_PhaF PF04066.13 gi|126179450|ref|YP_001047415.1| - 3.4 8.1 10.4 8.8 6.8 2.5 2.3 2 0 0 2 2 2 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) Peptidase_M42 PF05343.14 gi|126179451|ref|YP_001047416.1| - 4.8e-103 344.2 0.1 5.6e-103 344.0 0.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|126179451|ref|YP_001047416.1| - 1.9e-09 37.6 0.0 3.3e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|126179451|ref|YP_001047416.1| - 0.0002 20.3 0.0 0.00066 18.6 0.0 1.6 1 1 0 1 1 1 1 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.17 gi|126179451|ref|YP_001047416.1| - 0.0014 18.4 0.0 0.053 13.2 0.0 2.2 2 0 0 2 2 2 1 Peptidase family M28 Aminotran_1_2 PF00155.21 gi|126179452|ref|YP_001047417.1| - 5.1e-56 190.4 0.0 5.7e-56 190.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|126179452|ref|YP_001047417.1| - 1.3e-06 28.0 0.0 2e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|126179452|ref|YP_001047417.1| - 9e-05 21.6 0.0 0.00013 21.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|126179452|ref|YP_001047417.1| - 0.0012 18.2 0.1 0.0015 17.9 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|126179452|ref|YP_001047417.1| - 0.024 13.2 0.0 0.035 12.6 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme SIS PF01380.22 gi|126179453|ref|YP_001047418.1| - 2.4e-18 66.2 0.1 3.8e-18 65.6 0.1 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|126179453|ref|YP_001047418.1| - 1.7e-07 31.3 2.4 0.0017 18.3 0.1 2.9 2 1 1 3 3 3 2 SIS domain DEAD_assoc PF08494.11 gi|126179454|ref|YP_001047419.1| - 2.2e-44 151.6 0.3 6e-44 150.1 0.3 1.8 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|126179454|ref|YP_001047419.1| - 3.5e-28 98.5 0.0 9.3e-28 97.2 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|126179454|ref|YP_001047419.1| - 9.1e-16 58.2 0.0 3.3e-15 56.4 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|126179454|ref|YP_001047419.1| - 2.7e-05 24.3 0.0 0.00016 21.7 0.0 2.1 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|126179454|ref|YP_001047419.1| - 0.0054 17.0 0.0 0.04 14.2 0.0 2.4 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|126179454|ref|YP_001047419.1| - 0.065 12.3 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|126179454|ref|YP_001047419.1| - 0.092 13.1 0.0 0.34 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain Metallophos PF00149.28 gi|126179455|ref|YP_001047420.1| - 1.4e-05 25.7 0.3 2.5e-05 24.9 0.2 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|126179455|ref|YP_001047420.1| - 0.011 16.0 0.0 0.024 14.8 0.0 1.6 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain GSDH PF07995.11 gi|126179456|ref|YP_001047421.1| - 9.6e-17 61.3 0.0 4e-16 59.2 0.0 2.0 2 1 0 2 2 2 1 Glucose / Sorbosone dehydrogenase NHL PF01436.21 gi|126179456|ref|YP_001047421.1| - 0.00064 19.6 3.1 2.2 8.5 0.0 4.4 5 0 0 5 5 5 2 NHL repeat DUF2749 PF10907.8 gi|126179456|ref|YP_001047421.1| - 0.73 10.1 2.4 1.4 9.2 2.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) DUF2179 PF10035.9 gi|126179457|ref|YP_001047422.1| - 4.8e-12 45.4 0.3 1.3e-11 44.1 0.0 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2179) DUF1145 PF06611.12 gi|126179457|ref|YP_001047422.1| - 0.096 12.7 0.9 0.2 11.7 0.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1145) BTRD1 PF17660.1 gi|126179457|ref|YP_001047422.1| - 0.17 11.8 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial tandem repeat domain 1 HTH_20 PF12840.7 gi|126179458|ref|YP_001047423.1| - 2e-12 47.0 0.0 3.1e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_42 PF06224.12 gi|126179458|ref|YP_001047423.1| - 1.9e-05 24.4 0.0 2.6e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|126179458|ref|YP_001047423.1| - 7.3e-05 22.5 0.0 0.00012 21.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|126179458|ref|YP_001047423.1| - 8.9e-05 22.3 0.0 0.00018 21.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|126179458|ref|YP_001047423.1| - 0.00017 21.1 0.0 0.00028 20.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|126179458|ref|YP_001047423.1| - 0.0016 18.3 0.0 0.0034 17.2 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|126179458|ref|YP_001047423.1| - 0.013 16.0 0.0 0.022 15.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF742 PF05331.11 gi|126179458|ref|YP_001047423.1| - 0.018 14.9 0.0 0.033 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_IclR PF09339.10 gi|126179458|ref|YP_001047423.1| - 0.018 14.8 0.0 0.036 13.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|126179458|ref|YP_001047423.1| - 0.033 14.1 0.0 0.073 13.0 0.0 1.5 1 0 0 1 1 1 0 MarR family TNFR_16_TM PF18422.1 gi|126179458|ref|YP_001047423.1| - 0.16 11.9 0.5 0.83 9.7 0.2 2.0 2 0 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain tRNA-synt_2c PF01411.19 gi|126179459|ref|YP_001047424.1| - 2.7e-119 399.2 0.0 3.8e-119 398.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|126179459|ref|YP_001047424.1| - 2.3e-20 73.4 1.1 4.8e-20 72.4 1.1 1.5 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|126179459|ref|YP_001047424.1| - 6.3e-10 39.0 0.7 1.5e-09 37.8 0.7 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DUF4315 PF14193.6 gi|126179459|ref|YP_001047424.1| - 0.11 12.5 0.1 0.29 11.1 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4315) DUF2680 PF10925.8 gi|126179459|ref|YP_001047424.1| - 0.82 9.7 2.4 0.96 9.5 0.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2680) SWIM PF04434.17 gi|126179460|ref|YP_001047425.1| - 4.6e-06 26.2 0.1 7.7e-06 25.5 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger NIF3 PF01784.18 gi|126179461|ref|YP_001047426.1| - 1.3e-42 146.1 0.0 2.4e-42 145.3 0.0 1.3 1 1 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) AP_endonuc_2 PF01261.24 gi|126179461|ref|YP_001047426.1| - 0.0025 17.3 0.2 0.1 12.0 0.0 2.3 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel PEGA PF08308.11 gi|126179462|ref|YP_001047427.1| - 8.5e-68 224.2 22.5 1.1e-18 66.8 0.1 5.4 5 1 0 5 5 5 5 PEGA domain CarboxypepD_reg PF13620.6 gi|126179462|ref|YP_001047427.1| - 2.9e-19 69.1 17.5 3.5e-07 30.4 0.4 5.8 5 1 0 5 5 5 3 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|126179462|ref|YP_001047427.1| - 5.1e-13 48.8 2.7 0.0002 21.3 0.1 4.8 4 2 1 5 5 5 2 CarboxypepD_reg-like domain fn3_3 PF14686.6 gi|126179462|ref|YP_001047427.1| - 6.5e-06 25.8 15.1 0.00079 19.2 0.5 4.3 4 0 0 4 4 4 3 Polysaccharide lyase family 4, domain II DUF2012 PF09430.10 gi|126179462|ref|YP_001047427.1| - 0.0012 19.0 0.2 2.3 8.4 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF2012) Big_3_5 PF16640.5 gi|126179462|ref|YP_001047427.1| - 0.003 17.7 4.8 0.003 17.7 4.8 4.7 1 1 3 4 4 4 2 Bacterial Ig-like domain (group 3) fn3_5 PF06280.12 gi|126179462|ref|YP_001047427.1| - 0.086 13.5 3.8 0.99 10.1 0.0 3.5 2 2 1 3 3 3 0 Fn3-like domain Invasin_D3 PF09134.10 gi|126179462|ref|YP_001047427.1| - 3 8.2 17.2 0.93 9.8 5.5 3.5 2 1 1 3 3 3 0 Invasin, domain 3 DUF3568 PF12092.8 gi|126179462|ref|YP_001047427.1| - 6.4 6.9 10.1 9.5 6.3 0.1 3.8 3 2 1 4 4 4 0 Protein of unknown function (DUF3568) HcyBio PF01837.16 gi|126179463|ref|YP_001047428.1| - 1e-140 468.5 0.0 1.3e-140 468.2 0.0 1.1 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation CBS PF00571.28 gi|126179463|ref|YP_001047428.1| - 1.1e-24 86.6 5.3 3e-12 46.8 0.3 2.7 2 0 0 2 2 2 2 CBS domain Fer4 PF00037.27 gi|126179464|ref|YP_001047429.1| - 3.4e-15 55.1 12.8 1.9e-08 33.7 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|126179464|ref|YP_001047429.1| - 1.7e-11 43.6 12.1 2.5e-07 30.5 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126179464|ref|YP_001047429.1| - 7e-11 42.1 21.0 6.4e-08 32.6 11.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126179464|ref|YP_001047429.1| - 1e-10 42.0 22.0 1.1e-08 35.5 10.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126179464|ref|YP_001047429.1| - 1.5e-09 37.4 13.6 4.2e-05 23.4 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|126179464|ref|YP_001047429.1| - 9.2e-09 36.1 8.6 0.00041 21.2 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|126179464|ref|YP_001047429.1| - 2.5e-08 33.9 23.5 3e-06 27.2 13.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126179464|ref|YP_001047429.1| - 1.1e-07 32.3 4.3 0.0044 17.5 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126179464|ref|YP_001047429.1| - 1.7e-07 31.2 10.0 3.5e-07 30.3 10.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126179464|ref|YP_001047429.1| - 3e-07 30.4 14.2 0.0007 19.9 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|126179464|ref|YP_001047429.1| - 8.7e-07 29.3 4.7 0.0083 16.6 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain NIL PF09383.10 gi|126179464|ref|YP_001047429.1| - 3.8e-06 26.7 0.0 5e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 NIL domain Fer4_22 PF17179.4 gi|126179464|ref|YP_001047429.1| - 1.3e-05 26.0 4.6 0.027 15.3 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|126179464|ref|YP_001047429.1| - 5.8e-05 23.3 9.8 0.00055 20.1 10.2 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|126179464|ref|YP_001047429.1| - 0.0024 18.4 13.5 0.0072 16.9 3.1 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|126179464|ref|YP_001047429.1| - 0.0071 17.2 19.6 0.037 15.0 5.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain DUF3394 PF11874.8 gi|126179464|ref|YP_001047429.1| - 0.015 15.0 0.1 0.018 14.7 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3394) R2K_2 PF18299.1 gi|126179464|ref|YP_001047429.1| - 0.082 12.8 0.2 0.13 12.1 0.2 1.3 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 2 Fer4_15 PF13459.6 gi|126179464|ref|YP_001047429.1| - 0.83 10.4 13.8 3.1 8.6 3.1 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain HCV_NS2 PF01538.18 gi|126179464|ref|YP_001047429.1| - 1.8 8.2 6.2 2.8 7.6 1.1 2.2 1 1 1 2 2 2 0 Hepatitis C virus non-structural protein NS2 zf-C2H2_11 PF16622.5 gi|126179464|ref|YP_001047429.1| - 3.4 7.5 7.6 4.6 7.1 0.9 2.2 2 0 0 2 2 2 0 zinc-finger C2H2-type ApbE PF02424.15 gi|126179465|ref|YP_001047430.1| - 0.0049 16.4 2.8 0.76 9.3 0.6 2.2 2 0 0 2 2 2 2 ApbE family DUF3040 PF11239.8 gi|126179465|ref|YP_001047430.1| - 0.28 11.5 2.2 0.33 11.3 0.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) MarR_2 PF12802.7 gi|126179467|ref|YP_001047432.1| - 0.0031 17.3 0.0 0.0048 16.7 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|126179467|ref|YP_001047432.1| - 0.049 13.6 0.0 0.069 13.1 0.0 1.2 1 0 0 1 1 1 0 MarR family B-block_TFIIIC PF04182.12 gi|126179467|ref|YP_001047432.1| - 0.12 12.6 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Trm56 PF01994.16 gi|126179468|ref|YP_001047433.1| - 6.4e-50 168.0 0.0 8.1e-50 167.7 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SPOUT_MTase_2 PF14419.6 gi|126179468|ref|YP_001047433.1| - 0.041 13.3 0.0 0.062 12.7 0.0 1.3 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP SpoU_methylase PF00588.19 gi|126179468|ref|YP_001047433.1| - 0.18 12.0 0.0 0.23 11.6 0.0 1.2 1 0 0 1 1 1 0 SpoU rRNA Methylase family ATP-grasp_3 PF02655.14 gi|126179469|ref|YP_001047434.1| - 1.4e-29 103.2 0.0 1.9e-29 102.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|126179469|ref|YP_001047434.1| - 0.0046 16.5 0.0 3.3 7.1 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_Ter PF15632.6 gi|126179469|ref|YP_001047434.1| - 0.014 15.2 0.0 0.031 14.0 0.0 1.6 1 1 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.6 gi|126179469|ref|YP_001047434.1| - 0.11 11.7 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp TFIIE_alpha PF02002.17 gi|126179470|ref|YP_001047435.1| - 3.2e-19 68.7 0.2 5.3e-19 68.0 0.2 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.12 gi|126179470|ref|YP_001047435.1| - 5e-06 25.9 1.4 9.7e-06 25.0 1.4 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding HypA PF01155.19 gi|126179470|ref|YP_001047435.1| - 0.00086 19.3 0.3 0.0016 18.4 0.3 1.6 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_IclR PF09339.10 gi|126179470|ref|YP_001047435.1| - 0.0011 18.7 0.1 0.0021 17.8 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|126179470|ref|YP_001047435.1| - 0.027 14.1 0.2 0.57 9.9 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 GntR PF00392.21 gi|126179470|ref|YP_001047435.1| - 0.028 14.0 0.5 0.087 12.5 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|126179470|ref|YP_001047435.1| - 0.076 13.0 0.1 0.15 12.1 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_9 PF08221.11 gi|126179470|ref|YP_001047435.1| - 0.078 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TackOD1 PF18551.1 gi|126179470|ref|YP_001047435.1| - 0.091 12.4 1.9 0.15 11.7 1.6 1.5 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 zf-LITAF-like PF10601.9 gi|126179470|ref|YP_001047435.1| - 0.15 12.4 0.6 0.28 11.5 0.6 1.5 1 0 0 1 1 1 0 LITAF-like zinc ribbon domain SR1P PF13790.6 gi|126179470|ref|YP_001047435.1| - 0.26 11.4 2.0 0.32 11.1 0.1 1.9 2 0 0 2 2 2 0 SR1 protein RNA_POL_M_15KD PF02150.16 gi|126179470|ref|YP_001047435.1| - 1.1 9.2 6.5 6.6 6.7 0.6 2.3 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf_CopZ PF18423.1 gi|126179470|ref|YP_001047435.1| - 2.2 8.3 6.4 1.2 9.1 1.2 2.7 2 1 1 3 3 3 0 Zinc binding domain zinc_ribbon_10 PF10058.9 gi|126179470|ref|YP_001047435.1| - 6.3 6.6 6.5 6.6 6.5 4.3 2.1 2 1 1 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein HD PF01966.22 gi|126179471|ref|YP_001047436.1| - 1.6e-15 57.4 0.8 2.1e-15 57.0 0.8 1.2 1 0 0 1 1 1 1 HD domain TetR_C_15 PF17918.1 gi|126179472|ref|YP_001047437.1| - 0.028 15.2 0.1 0.067 13.9 0.1 1.7 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain ACT PF01842.25 gi|126179472|ref|YP_001047437.1| - 0.056 13.2 0.0 0.17 11.7 0.0 1.9 1 0 0 1 1 1 0 ACT domain PAS PF00989.25 gi|126179473|ref|YP_001047438.1| - 0.0099 15.9 0.2 0.019 15.0 0.1 1.5 1 1 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|126179473|ref|YP_001047438.1| - 0.031 14.5 0.3 0.15 12.3 0.2 1.9 1 1 1 2 2 2 0 PAS fold PAS_8 PF13188.7 gi|126179473|ref|YP_001047438.1| - 0.054 13.5 0.2 0.13 12.3 0.2 1.6 2 0 0 2 2 2 0 PAS domain PAS_4 PF08448.10 gi|126179474|ref|YP_001047439.1| - 1.1e-46 157.6 1.8 5.5e-22 78.1 0.3 3.3 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|126179474|ref|YP_001047439.1| - 9.2e-28 96.5 0.0 1.8e-10 40.8 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|126179474|ref|YP_001047439.1| - 1.4e-23 83.1 0.0 1.3e-10 41.5 0.0 3.8 4 0 0 4 4 4 3 PAS domain HATPase_c PF02518.26 gi|126179474|ref|YP_001047439.1| - 9.8e-19 67.9 0.0 2.7e-18 66.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|126179474|ref|YP_001047439.1| - 1e-16 60.5 0.0 1.2e-06 28.4 0.0 3.7 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.12 gi|126179474|ref|YP_001047439.1| - 3.1e-15 56.2 0.0 6e-06 26.5 0.0 4.7 5 0 0 5 5 5 2 PAS fold PAS_7 PF12860.7 gi|126179474|ref|YP_001047439.1| - 0.00042 20.5 5.5 0.73 10.0 0.1 4.5 2 2 1 3 3 3 2 PAS fold HATPase_c_2 PF13581.6 gi|126179474|ref|YP_001047439.1| - 0.0011 19.0 0.0 0.0027 17.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|126179474|ref|YP_001047439.1| - 0.0029 17.5 0.0 0.0076 16.1 0.0 1.6 1 0 0 1 1 1 1 GHKL domain Peptidase_S3 PF00944.19 gi|126179474|ref|YP_001047439.1| - 0.053 13.3 0.0 0.58 9.9 0.0 2.2 2 0 0 2 2 2 0 Alphavirus core protein NYD-SP28_assoc PF14775.6 gi|126179474|ref|YP_001047439.1| - 0.77 9.9 2.5 2.2 8.4 2.5 1.8 1 0 0 1 1 1 0 Sperm tail C-terminal domain TSC22 PF01166.18 gi|126179474|ref|YP_001047439.1| - 3.2 8.1 7.0 0.36 11.2 2.0 2.0 3 0 0 3 3 1 0 TSC-22/dip/bun family CxxCxxCC PF03692.15 gi|126179475|ref|YP_001047440.1| - 0.014 16.1 8.4 0.18 12.5 8.4 2.3 1 1 0 1 1 1 0 Putative zinc- or iron-chelating domain AXE1 PF05448.12 gi|126179476|ref|YP_001047441.1| - 1.9e-06 26.8 0.0 0.0042 15.8 0.0 2.7 2 1 1 3 3 3 2 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.7 gi|126179476|ref|YP_001047441.1| - 4.3e-05 24.2 4.7 4.3e-05 24.2 4.7 1.8 1 1 1 2 2 2 1 Alpha/beta hydrolase family DUF1100 PF06500.11 gi|126179476|ref|YP_001047441.1| - 5e-05 22.3 0.0 9.7e-05 21.3 0.0 1.4 2 0 0 2 2 2 1 Alpha/beta hydrolase of unknown function (DUF1100) Peptidase_S9 PF00326.21 gi|126179476|ref|YP_001047441.1| - 0.00027 20.5 0.0 0.00067 19.2 0.0 1.7 1 0 0 1 1 1 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 gi|126179476|ref|YP_001047441.1| - 0.0015 17.9 0.0 0.0029 16.9 0.0 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 BAAT_C PF08840.11 gi|126179476|ref|YP_001047441.1| - 0.0064 16.4 0.0 0.017 15.0 0.0 1.7 2 0 0 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_1 PF00561.20 gi|126179476|ref|YP_001047441.1| - 0.012 15.3 0.0 4.3 6.9 0.0 2.7 1 1 2 3 3 3 0 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 gi|126179476|ref|YP_001047441.1| - 0.041 13.5 0.0 0.14 11.7 0.0 1.9 1 1 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) HEAT_2 PF13646.6 gi|126179477|ref|YP_001047442.1| - 6.7e-114 372.5 87.3 8.9e-14 51.6 1.9 16.7 2 2 14 19 19 19 19 HEAT repeats HEAT_PBS PF03130.16 gi|126179477|ref|YP_001047442.1| - 3.6e-44 144.9 136.3 5.2e-05 23.5 0.0 31.8 31 2 0 31 31 31 16 PBS lyase HEAT-like repeat Arm PF00514.23 gi|126179477|ref|YP_001047442.1| - 8.9e-30 101.8 25.6 0.0051 16.8 0.0 22.5 17 8 10 27 27 27 6 Armadillo/beta-catenin-like repeat HEAT PF02985.22 gi|126179477|ref|YP_001047442.1| - 6.8e-29 97.4 34.5 0.097 13.0 0.0 20.3 23 0 0 23 23 23 8 HEAT repeat Aconitase_B_N PF11791.8 gi|126179477|ref|YP_001047442.1| - 9.2e-13 48.5 1.4 1.1 9.3 0.0 12.0 10 5 5 16 16 16 3 Aconitate B N-terminal domain HEAT_EZ PF13513.6 gi|126179477|ref|YP_001047442.1| - 8.9e-10 38.9 85.4 0.038 14.5 0.0 21.1 16 6 5 21 21 21 7 HEAT-like repeat Cnd1 PF12717.7 gi|126179477|ref|YP_001047442.1| - 2.5e-08 34.2 0.0 78 3.3 0.1 10.5 10 2 2 12 12 12 0 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|126179477|ref|YP_001047442.1| - 0.33 9.5 0.0 7.4 5.0 0.0 3.4 4 0 0 4 4 4 0 Adaptin N terminal region HTH_17 PF12728.7 gi|126179478|ref|YP_001047443.1| - 4e-12 46.1 0.0 8.4e-12 45.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Cas_Cas02710 PF09670.10 gi|126179479|ref|YP_001047444.1| - 0.062 12.1 0.0 0.076 11.8 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) PIN_4 PF13638.6 gi|126179480|ref|YP_001047445.1| - 0.094 13.0 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 PIN domain HAD_2 PF13419.6 gi|126179481|ref|YP_001047446.1| - 6.2e-27 94.8 0.0 7.2e-27 94.6 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|126179481|ref|YP_001047446.1| - 1.5e-15 58.1 0.0 1.7e-15 57.9 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|126179481|ref|YP_001047446.1| - 4.9e-11 42.5 0.0 1e-10 41.5 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|126179481|ref|YP_001047446.1| - 2.7e-05 24.6 0.0 3.5e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|126179481|ref|YP_001047446.1| - 0.068 13.3 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF2099 PF09872.9 gi|126179482|ref|YP_001047447.1| - 4.4e-102 340.7 2.3 5e-102 340.5 2.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) zinc_ribbon_13 PF09855.9 gi|126179483|ref|YP_001047448.1| - 0.0029 17.7 1.2 0.004 17.3 0.1 1.7 1 1 1 2 2 2 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn-ribbon_8 PF09723.10 gi|126179483|ref|YP_001047448.1| - 0.0039 17.3 4.2 0.0074 16.4 4.2 1.6 1 1 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|126179483|ref|YP_001047448.1| - 0.0065 15.8 0.2 0.0065 15.8 0.2 2.0 2 1 0 1 1 1 1 zinc-ribbon domain DUF2256 PF10013.9 gi|126179483|ref|YP_001047448.1| - 0.13 12.4 2.7 0.61 10.3 0.2 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) UPF0547 PF10571.9 gi|126179483|ref|YP_001047448.1| - 0.23 11.6 6.6 1.3 9.1 0.3 2.4 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1624 PF07786.12 gi|126179484|ref|YP_001047449.1| - 2e-73 246.7 10.1 2.3e-73 246.5 10.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) OpgC_C PF10129.9 gi|126179484|ref|YP_001047449.1| - 2.1e-06 26.9 14.9 0.00015 20.8 6.7 2.7 1 1 0 2 2 2 2 OpgC protein Acyl_transf_3 PF01757.22 gi|126179484|ref|YP_001047449.1| - 4.3e-05 22.7 22.4 0.015 14.3 8.0 2.1 1 1 1 2 2 2 2 Acyltransferase family DUF3017 PF11222.8 gi|126179484|ref|YP_001047449.1| - 0.0011 19.1 1.6 0.0044 17.2 0.4 2.8 2 1 0 2 2 2 1 Protein of unknown function (DUF3017) Adenine_deam_C PF13382.6 gi|126179485|ref|YP_001047450.1| - 7.9e-54 181.5 0.1 1.2e-53 180.9 0.1 1.3 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|126179485|ref|YP_001047450.1| - 4.9e-25 88.6 0.1 1.9e-23 83.3 0.1 2.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|126179485|ref|YP_001047450.1| - 8.8e-17 61.7 0.8 3.8e-09 36.5 0.1 2.2 2 0 0 2 2 2 2 Amidohydrolase family SpdB PF05122.13 gi|126179485|ref|YP_001047450.1| - 0.0087 16.2 0.5 0.023 14.8 0.4 1.7 2 0 0 2 2 2 1 Mobile element transfer protein YtkA PF13115.6 gi|126179486|ref|YP_001047451.1| - 0.13 12.9 0.1 0.23 12.1 0.1 1.5 1 1 0 1 1 1 0 YtkA-like Peptidase_M48 PF01435.18 gi|126179487|ref|YP_001047452.1| - 0.00072 19.4 0.0 0.0012 18.7 0.0 1.3 1 1 0 1 1 1 1 Peptidase family M48 AAA_31 PF13614.6 gi|126179488|ref|YP_001047453.1| - 3.9e-46 157.2 0.0 5.5e-46 156.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|126179488|ref|YP_001047453.1| - 3.3e-16 59.5 0.0 1.9e-15 57.1 0.0 2.0 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|126179488|ref|YP_001047453.1| - 4.1e-11 42.8 0.4 1.4e-07 31.2 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|126179488|ref|YP_001047453.1| - 1.4e-09 37.6 0.2 0.00011 21.7 0.1 2.2 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|126179488|ref|YP_001047453.1| - 7.4e-09 35.4 0.0 7.2e-07 28.9 0.0 2.7 2 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|126179488|ref|YP_001047453.1| - 2e-08 34.0 0.7 0.00092 18.7 0.1 3.2 3 0 0 3 3 3 3 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|126179488|ref|YP_001047453.1| - 5.2e-05 22.6 0.8 0.00063 19.0 0.3 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 gi|126179488|ref|YP_001047453.1| - 5.7e-05 22.5 0.2 0.0011 18.3 0.1 2.1 2 0 0 2 2 2 1 VirC1 protein SRP54 PF00448.22 gi|126179488|ref|YP_001047453.1| - 6.8e-05 22.6 0.0 0.002 17.8 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CLP1_P PF16575.5 gi|126179488|ref|YP_001047453.1| - 0.0015 18.3 0.7 0.0057 16.5 0.0 2.1 3 0 0 3 3 3 1 mRNA cleavage and polyadenylation factor CLP1 P-loop ATP_bind_1 PF03029.17 gi|126179488|ref|YP_001047453.1| - 0.002 18.0 0.4 0.0084 15.9 0.5 1.9 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_24 PF13479.6 gi|126179488|ref|YP_001047453.1| - 0.019 14.7 0.0 0.032 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain MCPsignal PF00015.21 gi|126179489|ref|YP_001047454.1| - 2.4e-46 157.7 48.6 6.2e-43 146.6 21.3 3.6 1 1 2 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 gi|126179489|ref|YP_001047454.1| - 5.9e-23 81.2 0.1 1.2e-12 48.1 0.0 6.0 5 3 0 5 5 5 4 PAS fold PAS PF00989.25 gi|126179489|ref|YP_001047454.1| - 9.6e-21 73.9 0.0 2.5e-09 37.1 0.0 4.7 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|126179489|ref|YP_001047454.1| - 7e-16 58.4 0.0 3.6e-07 30.4 0.0 5.0 4 0 0 4 4 4 3 PAS domain PAS_8 PF13188.7 gi|126179489|ref|YP_001047454.1| - 2.9e-07 30.3 0.0 4.4e-05 23.4 0.0 3.9 4 0 0 4 4 4 1 PAS domain DUF948 PF06103.11 gi|126179489|ref|YP_001047454.1| - 1.1e-05 25.5 3.0 1.1e-05 25.5 3.0 5.7 5 1 1 6 6 5 2 Bacterial protein of unknown function (DUF948) DUF3470 PF11953.8 gi|126179489|ref|YP_001047454.1| - 0.0013 18.6 0.0 41 4.3 0.0 4.2 3 0 0 3 3 3 0 Domain of unknown function (DUF3470) MLTR_LBD PF17765.1 gi|126179489|ref|YP_001047454.1| - 0.016 15.3 0.0 0.07 13.2 0.0 2.1 1 0 0 1 1 1 0 MmyB-like transcription regulator ligand binding domain Mur_ligase_C PF02875.21 gi|126179489|ref|YP_001047454.1| - 0.09 13.0 0.3 23 5.3 0.0 3.5 2 0 0 2 2 2 0 Mur ligase family, glutamate ligase domain HATPase_c_4 PF13749.6 gi|126179489|ref|YP_001047454.1| - 0.098 12.8 1.6 7.8 6.7 0.1 3.3 3 0 0 3 3 3 0 Putative ATP-dependent DNA helicase recG C-terminal PAS_7 PF12860.7 gi|126179489|ref|YP_001047454.1| - 0.13 12.4 0.1 0.13 12.4 0.1 4.3 5 1 0 5 5 4 0 PAS fold DUF3606 PF12244.8 gi|126179489|ref|YP_001047454.1| - 0.65 10.0 3.8 1.2e+02 2.8 0.1 3.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3606) CK2S PF15011.6 gi|126179489|ref|YP_001047454.1| - 1.5 8.7 7.0 0.39 10.6 1.5 2.8 2 2 0 2 2 2 0 Casein Kinase 2 substrate DUF3836 PF12930.7 gi|126179489|ref|YP_001047454.1| - 1.7 8.4 14.5 8.1 6.2 0.7 3.4 3 0 0 3 3 3 0 Family of unknown function (DUF3836) IFT46_B_C PF12317.8 gi|126179489|ref|YP_001047454.1| - 2.5 7.8 11.7 3.5 7.3 0.1 4.1 4 1 1 5 5 5 0 Intraflagellar transport complex B protein 46 C terminal Vip3A_N PF12495.8 gi|126179489|ref|YP_001047454.1| - 2.6 7.9 9.2 13 5.7 0.5 3.2 3 0 0 3 3 3 0 Vegetative insecticide protein 3A N terminal acVLRF1 PF18859.1 gi|126179489|ref|YP_001047454.1| - 3.5 7.9 6.4 1.2 9.4 2.7 2.2 2 0 0 2 2 1 0 Actinobacteria/chloroflexi VLRF1 release factor Sec34 PF04136.15 gi|126179489|ref|YP_001047454.1| - 7.6 6.4 17.9 22 4.9 1.0 5.1 2 2 2 4 4 4 0 Sec34-like family CheW PF01584.19 gi|126179490|ref|YP_001047455.1| - 1.7e-33 115.2 2.0 1.8e-33 115.1 2.0 1.0 1 0 0 1 1 1 1 CheW-like domain CheR PF01739.18 gi|126179491|ref|YP_001047456.1| - 2.1e-54 184.0 0.0 2.8e-54 183.6 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|126179491|ref|YP_001047456.1| - 6.2e-13 48.3 1.2 1.2e-12 47.3 1.2 1.5 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain TMEM220 PF15071.6 gi|126179492|ref|YP_001047457.1| - 0.0067 17.2 0.2 0.0079 16.9 0.2 1.1 1 0 0 1 1 1 1 Transmembrane family 220, helix RseC_MucC PF04246.12 gi|126179492|ref|YP_001047457.1| - 0.019 15.0 1.0 0.021 14.8 1.0 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Med7 PF05983.11 gi|126179492|ref|YP_001047457.1| - 0.036 14.2 0.0 0.036 14.2 0.0 1.1 1 0 0 1 1 1 0 MED7 protein Wzy_C PF04932.15 gi|126179492|ref|YP_001047457.1| - 0.048 13.3 1.3 0.054 13.1 1.3 1.1 1 0 0 1 1 1 0 O-Antigen ligase DUF4133 PF13571.6 gi|126179492|ref|YP_001047457.1| - 0.084 13.2 1.9 0.1 13.0 1.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4133) DUF2530 PF10745.9 gi|126179492|ref|YP_001047457.1| - 0.11 12.8 0.9 0.14 12.4 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2530) DUF3784 PF12650.7 gi|126179492|ref|YP_001047457.1| - 0.12 12.6 4.4 0.17 12.1 4.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) DUF2207 PF09972.9 gi|126179492|ref|YP_001047457.1| - 0.15 10.8 1.2 0.16 10.7 1.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Herpes_UL73 PF03554.13 gi|126179492|ref|YP_001047457.1| - 5.4 7.1 8.1 0.67 10.0 2.0 2.1 1 1 1 2 2 2 0 UL73 viral envelope glycoprotein DUF3221 PF11518.8 gi|126179494|ref|YP_001047459.1| - 0.011 16.1 0.0 0.011 16.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3221) RWP-RK PF02042.15 gi|126179495|ref|YP_001047460.1| - 0.02 14.9 0.0 0.033 14.2 0.0 1.4 1 0 0 1 1 1 0 RWP-RK domain DUF460 PF04312.13 gi|126179496|ref|YP_001047461.1| - 0.14 11.9 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF460) Nucleo_P87 PF07267.11 gi|126179496|ref|YP_001047461.1| - 1.8 7.3 8.6 2 7.2 8.6 1.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus capsid protein P87 Hamartin PF04388.12 gi|126179496|ref|YP_001047461.1| - 4.9 5.7 8.5 6.1 5.4 8.5 1.2 1 0 0 1 1 1 0 Hamartin protein tRNA_anti-codon PF01336.25 gi|126179497|ref|YP_001047462.1| - 5.2e-07 29.6 0.0 1.3e-06 28.3 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|126179497|ref|YP_001047462.1| - 3.5e-05 24.1 0.3 0.00011 22.4 0.3 2.0 1 0 0 1 1 1 1 S1 RNA binding domain DHH PF01368.20 gi|126179497|ref|YP_001047462.1| - 0.00025 21.3 0.1 0.00055 20.1 0.1 1.5 1 0 0 1 1 1 1 DHH family tRNA_anti_2 PF13742.6 gi|126179497|ref|YP_001047462.1| - 0.00029 21.0 0.1 0.0011 19.2 0.0 2.0 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain EFhand_Ca_insen PF08726.10 gi|126179497|ref|YP_001047462.1| - 0.027 14.5 0.0 0.11 12.6 0.0 2.0 2 0 0 2 2 2 0 Ca2+ insensitive EF hand TrkA_C PF02080.21 gi|126179498|ref|YP_001047463.1| - 5.2e-26 90.3 1.1 2e-11 43.6 0.1 3.2 3 0 0 3 3 3 2 TrkA-C domain PhoU PF01895.19 gi|126179498|ref|YP_001047463.1| - 3.3e-17 62.7 15.6 1.4e-09 38.2 6.6 2.5 2 0 0 2 2 2 2 PhoU domain Cupin_6 PF12852.7 gi|126179498|ref|YP_001047463.1| - 0.00028 20.7 0.0 0.41 10.4 0.0 2.3 2 0 0 2 2 2 2 Cupin MgtE PF01769.16 gi|126179499|ref|YP_001047464.1| - 6.4e-34 117.0 27.3 4.2e-18 65.9 7.4 3.8 3 1 1 4 4 4 2 Divalent cation transporter DUF2953 PF11167.8 gi|126179499|ref|YP_001047464.1| - 8.7 6.5 7.9 12 6.0 0.4 4.4 5 0 0 5 5 5 0 Protein of unknown function (DUF2953) Lactamase_B_2 PF12706.7 gi|126179500|ref|YP_001047465.1| - 2.4e-25 89.3 0.8 1.3e-11 44.4 0.1 2.2 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|126179500|ref|YP_001047465.1| - 9.9e-15 55.1 1.4 7.5e-14 52.2 1.4 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|126179500|ref|YP_001047465.1| - 0.058 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 tRNase Z endonuclease Lactamase_B_3 PF13483.6 gi|126179500|ref|YP_001047465.1| - 0.082 12.8 0.0 0.35 10.7 0.0 2.0 2 1 0 2 2 2 0 Beta-lactamase superfamily domain AP_endonuc_2 PF01261.24 gi|126179501|ref|YP_001047466.1| - 4.8e-19 68.6 0.2 6.6e-19 68.2 0.2 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AAA_17 PF13207.6 gi|126179502|ref|YP_001047467.1| - 1.2e-14 54.8 0.0 1.8e-14 54.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|126179502|ref|YP_001047467.1| - 3e-09 37.5 0.0 4e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|126179502|ref|YP_001047467.1| - 0.004 17.3 0.0 0.006 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|126179502|ref|YP_001047467.1| - 0.011 15.9 0.0 0.016 15.3 0.0 1.3 1 0 0 1 1 1 0 Adenylate kinase CoaE PF01121.20 gi|126179502|ref|YP_001047467.1| - 0.18 11.4 0.1 0.3 10.8 0.1 1.3 1 0 0 1 1 1 0 Dephospho-CoA kinase Radical_SAM PF04055.21 gi|126179503|ref|YP_001047468.1| - 3.2e-17 63.4 0.0 4e-17 63.1 0.0 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|126179503|ref|YP_001047468.1| - 5e-08 33.3 0.0 7.3e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|126179503|ref|YP_001047468.1| - 8.5e-05 22.7 0.0 0.00014 22.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain ThiC_Rad_SAM PF01964.18 gi|126179504|ref|YP_001047469.1| - 2e-174 580.3 0.3 2.3e-174 580.1 0.3 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family EAP30 PF04157.16 gi|126179504|ref|YP_001047469.1| - 0.1 11.9 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family CMD PF02627.20 gi|126179505|ref|YP_001047470.1| - 1.4e-15 57.1 0.2 2e-15 56.6 0.2 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family 5-FTHF_cyc-lig PF01812.20 gi|126179506|ref|YP_001047471.1| - 4.4e-35 121.2 0.0 5.1e-35 121.0 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family AAA PF00004.29 gi|126179507|ref|YP_001047472.1| - 3.6e-100 331.6 0.0 1.2e-49 168.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|126179507|ref|YP_001047472.1| - 1.9e-28 98.0 2.0 1.2e-13 50.7 0.2 2.9 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|126179507|ref|YP_001047472.1| - 8.8e-25 86.7 0.2 8.3e-24 83.6 0.2 2.7 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|126179507|ref|YP_001047472.1| - 2.6e-16 59.8 0.0 4.2e-08 33.1 0.0 2.7 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|126179507|ref|YP_001047472.1| - 4.8e-15 56.1 0.0 3.9e-07 30.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.17 gi|126179507|ref|YP_001047472.1| - 4.2e-14 52.1 0.0 1.3e-13 50.5 0.0 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|126179507|ref|YP_001047472.1| - 5.3e-13 49.7 0.5 7.4e-06 26.4 0.0 3.6 3 1 1 4 4 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|126179507|ref|YP_001047472.1| - 9.6e-11 42.1 1.8 0.0047 17.2 0.0 4.6 3 2 1 4 4 3 2 AAA domain TIP49 PF06068.13 gi|126179507|ref|YP_001047472.1| - 9.6e-11 41.5 0.0 0.00033 20.0 0.0 2.6 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_5 PF07728.14 gi|126179507|ref|YP_001047472.1| - 1e-09 38.5 0.8 0.0017 18.4 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|126179507|ref|YP_001047472.1| - 1.9e-09 37.9 0.0 0.00062 19.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|126179507|ref|YP_001047472.1| - 3.9e-09 36.6 0.0 0.00041 20.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|126179507|ref|YP_001047472.1| - 1.8e-07 31.5 0.0 0.035 14.5 0.0 3.5 3 0 0 3 3 3 2 RNA helicase AAA_18 PF13238.6 gi|126179507|ref|YP_001047472.1| - 1.8e-07 31.8 0.0 0.035 14.7 0.0 2.8 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|126179507|ref|YP_001047472.1| - 3.7e-07 30.1 0.0 0.017 14.9 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|126179507|ref|YP_001047472.1| - 7e-07 28.8 0.2 0.05 13.0 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|126179507|ref|YP_001047472.1| - 1.6e-06 28.5 0.0 0.074 13.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|126179507|ref|YP_001047472.1| - 2.6e-06 27.1 0.0 0.031 13.8 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|126179507|ref|YP_001047472.1| - 4.2e-06 26.9 0.1 0.23 11.4 0.0 3.4 3 1 0 3 3 3 2 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 gi|126179507|ref|YP_001047472.1| - 5.3e-06 26.2 0.1 0.27 10.9 0.0 3.7 2 2 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.27 gi|126179507|ref|YP_001047472.1| - 6.2e-06 26.8 0.1 0.22 12.0 0.0 3.1 3 0 0 3 3 2 2 ABC transporter AAA_24 PF13479.6 gi|126179507|ref|YP_001047472.1| - 7e-06 25.9 0.0 0.095 12.4 0.0 2.9 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|126179507|ref|YP_001047472.1| - 1.2e-05 24.8 2.0 1.6 8.1 0.0 4.0 3 1 0 4 4 4 2 KaiC Zeta_toxin PF06414.12 gi|126179507|ref|YP_001047472.1| - 2.7e-05 23.6 0.0 0.21 10.9 0.0 2.8 2 0 0 2 2 2 2 Zeta toxin AAA_25 PF13481.6 gi|126179507|ref|YP_001047472.1| - 3.1e-05 23.6 4.5 1.4 8.5 0.1 3.7 3 1 1 4 4 3 3 AAA domain DUF815 PF05673.13 gi|126179507|ref|YP_001047472.1| - 5.7e-05 22.4 0.0 0.41 9.8 0.0 2.8 3 0 0 3 3 2 2 Protein of unknown function (DUF815) Parvo_NS1 PF01057.17 gi|126179507|ref|YP_001047472.1| - 5.7e-05 22.3 0.0 0.19 10.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_3 PF07726.11 gi|126179507|ref|YP_001047472.1| - 5.8e-05 23.0 0.0 0.31 10.9 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|126179507|ref|YP_001047472.1| - 7e-05 22.8 0.0 0.73 9.8 0.0 2.7 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|126179507|ref|YP_001047472.1| - 8.4e-05 22.1 0.1 0.53 9.7 0.0 2.7 3 0 0 3 3 2 2 PhoH-like protein NACHT PF05729.12 gi|126179507|ref|YP_001047472.1| - 0.00023 21.1 0.0 4.1 7.3 0.0 3.6 2 1 1 3 3 3 0 NACHT domain DUF2075 PF09848.9 gi|126179507|ref|YP_001047472.1| - 0.00023 20.5 0.1 0.44 9.7 0.0 2.9 3 0 0 3 3 3 2 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|126179507|ref|YP_001047472.1| - 0.00041 20.1 0.0 1.3 8.7 0.0 2.8 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|126179507|ref|YP_001047472.1| - 0.00055 19.2 0.0 1 8.5 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain AAA_19 PF13245.6 gi|126179507|ref|YP_001047472.1| - 0.00059 20.2 0.5 1.7 9.0 0.1 3.0 2 1 1 3 3 2 1 AAA domain Bac_DnaA PF00308.18 gi|126179507|ref|YP_001047472.1| - 0.0008 19.3 0.0 0.75 9.6 0.0 2.8 2 1 0 2 2 2 1 Bacterial dnaA protein AAA_17 PF13207.6 gi|126179507|ref|YP_001047472.1| - 0.0011 19.4 0.0 2 8.9 0.0 3.1 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|126179507|ref|YP_001047472.1| - 0.002 18.2 0.0 2.9 8.0 0.0 2.7 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_11 PF13086.6 gi|126179507|ref|YP_001047472.1| - 0.0024 17.7 2.4 1.6 8.5 0.0 3.1 3 0 0 3 3 3 1 AAA domain NTPase_1 PF03266.15 gi|126179507|ref|YP_001047472.1| - 0.0055 16.6 8.1 2 8.3 0.0 4.8 4 2 1 5 5 4 1 NTPase Rad17 PF03215.15 gi|126179507|ref|YP_001047472.1| - 0.013 15.4 0.0 3.6 7.5 0.0 2.9 2 2 0 2 2 2 0 Rad17 P-loop domain Cytidylate_kin2 PF13189.6 gi|126179507|ref|YP_001047472.1| - 0.014 15.5 0.2 2.5 8.2 0.0 3.0 3 0 0 3 3 3 0 Cytidylate kinase-like family Vps4_C PF09336.10 gi|126179507|ref|YP_001047472.1| - 0.018 15.1 0.1 4.3 7.4 0.0 2.8 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain Guanylate_kin PF00625.21 gi|126179507|ref|YP_001047472.1| - 0.019 14.7 0.1 28 4.3 0.0 3.9 2 1 1 3 3 3 0 Guanylate kinase Cytidylate_kin PF02224.18 gi|126179507|ref|YP_001047472.1| - 0.02 14.7 0.1 2.7 7.7 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase AFG1_ATPase PF03969.16 gi|126179507|ref|YP_001047472.1| - 0.021 13.7 0.0 6.4 5.6 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase TniB PF05621.11 gi|126179507|ref|YP_001047472.1| - 0.022 14.2 0.0 11 5.4 0.0 3.3 4 0 0 4 4 4 0 Bacterial TniB protein ATP-synt_ab PF00006.25 gi|126179507|ref|YP_001047472.1| - 0.024 14.3 0.0 3.1 7.4 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain T2SSE PF00437.20 gi|126179507|ref|YP_001047472.1| - 0.057 12.5 0.0 8 5.4 0.0 2.6 2 0 0 2 2 2 0 Type II/IV secretion system protein SKI PF01202.22 gi|126179507|ref|YP_001047472.1| - 0.083 13.0 0.0 7.5 6.6 0.0 2.7 2 0 0 2 2 2 0 Shikimate kinase Viral_helicase1 PF01443.18 gi|126179507|ref|YP_001047472.1| - 0.099 12.4 0.0 0.81 9.4 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DUF5631 PF18645.1 gi|126179507|ref|YP_001047472.1| - 0.1 13.0 0.1 0.81 10.1 0.0 2.6 2 0 0 2 2 1 0 Family of unknown function (DUF5631) ArsA_HSP20 PF17886.1 gi|126179508|ref|YP_001047473.1| - 6.9e-07 28.7 0.0 1.1e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|126179508|ref|YP_001047473.1| - 0.0016 18.6 0.0 1.1 9.4 0.0 2.2 1 1 1 2 2 2 2 Hsp20/alpha crystallin family FBPase_3 PF01950.16 gi|126179509|ref|YP_001047474.1| - 8.7e-181 600.9 0.0 9.9e-181 600.7 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase LSM PF01423.22 gi|126179510|ref|YP_001047475.1| - 9.7e-19 66.8 0.2 1.1e-18 66.7 0.2 1.1 1 0 0 1 1 1 1 LSM domain MtrG PF04210.13 gi|126179510|ref|YP_001047475.1| - 0.0084 15.9 0.1 0.011 15.6 0.1 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G Tic110 PF16940.5 gi|126179510|ref|YP_001047475.1| - 0.064 11.7 0.0 0.067 11.7 0.0 1.0 1 0 0 1 1 1 0 Chloroplast envelope transporter DUF150_C PF17384.2 gi|126179510|ref|YP_001047475.1| - 0.082 13.1 0.1 0.11 12.7 0.1 1.4 1 1 0 1 1 1 0 RimP C-terminal SH3 domain B-block_TFIIIC PF04182.12 gi|126179511|ref|YP_001047476.1| - 2.4e-07 30.8 0.1 3e-07 30.5 0.1 1.1 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.22 gi|126179511|ref|YP_001047476.1| - 4.4e-05 23.3 0.0 6.8e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|126179511|ref|YP_001047476.1| - 5.7e-05 22.9 0.0 8.6e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|126179511|ref|YP_001047476.1| - 0.00088 18.8 0.1 0.0012 18.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|126179511|ref|YP_001047476.1| - 0.0011 18.8 0.0 0.0013 18.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|126179511|ref|YP_001047476.1| - 0.012 15.7 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|126179511|ref|YP_001047476.1| - 0.013 15.9 0.1 0.018 15.5 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|126179511|ref|YP_001047476.1| - 0.016 15.1 0.1 0.043 13.7 0.2 1.6 2 0 0 2 2 2 0 TFIIE alpha subunit DUF2250 PF10007.9 gi|126179511|ref|YP_001047476.1| - 0.016 15.3 0.1 0.022 14.9 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_micro PF17007.5 gi|126179511|ref|YP_001047476.1| - 0.046 12.5 0.0 0.051 12.4 0.0 1.0 1 0 0 1 1 1 0 HTH-like HTH_5 PF01022.20 gi|126179513|ref|YP_001047478.1| - 4e-09 36.2 3.3 1.1e-08 34.7 0.5 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|126179513|ref|YP_001047478.1| - 5e-06 26.5 0.3 5e-06 26.5 0.3 2.9 3 0 0 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|126179513|ref|YP_001047478.1| - 0.0018 18.1 1.5 0.19 11.6 0.2 2.5 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|126179513|ref|YP_001047478.1| - 0.0021 17.9 0.6 0.99 9.3 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HxlR PF01638.17 gi|126179513|ref|YP_001047478.1| - 0.0067 16.3 1.2 0.21 11.4 0.0 2.4 2 0 0 2 2 2 1 HxlR-like helix-turn-helix HTH_24 PF13412.6 gi|126179513|ref|YP_001047478.1| - 0.0093 15.5 4.6 0.036 13.6 2.0 2.9 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.16 gi|126179513|ref|YP_001047478.1| - 0.011 15.5 0.2 2.1 8.2 0.1 2.5 2 0 0 2 2 2 0 LexA DNA binding domain MarR PF01047.22 gi|126179513|ref|YP_001047478.1| - 0.031 14.2 0.9 0.2 11.6 0.3 2.6 3 0 0 3 3 3 0 MarR family DUF390 PF04094.14 gi|126179513|ref|YP_001047478.1| - 0.044 12.1 0.7 0.054 11.8 0.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF390) DDRGK PF09756.9 gi|126179513|ref|YP_001047478.1| - 0.049 13.2 2.3 0.089 12.4 0.1 2.3 2 1 0 2 2 2 0 DDRGK domain DprA_WH PF17782.1 gi|126179513|ref|YP_001047478.1| - 0.1 12.7 1.9 0.43 10.7 0.1 2.3 2 0 0 2 2 2 0 DprA winged helix domain Rrf2 PF02082.20 gi|126179513|ref|YP_001047478.1| - 0.15 12.4 0.7 7.6 7.0 0.1 2.4 2 0 0 2 2 2 0 Transcriptional regulator DUF3500 PF12006.8 gi|126179513|ref|YP_001047478.1| - 0.16 11.4 0.0 0.29 10.6 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3500) HTH_11 PF08279.12 gi|126179513|ref|YP_001047478.1| - 0.17 11.8 2.0 0.45 10.5 0.3 2.3 2 0 0 2 2 2 0 HTH domain DUF3552 PF12072.8 gi|126179513|ref|YP_001047478.1| - 0.19 11.1 3.0 3.7 6.9 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) IMPDH PF00478.25 gi|126179514|ref|YP_001047479.1| - 3.4e-145 483.4 9.4 4e-145 483.2 9.4 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|126179514|ref|YP_001047479.1| - 2.5e-28 98.3 3.9 9.5e-14 51.6 0.0 3.0 3 0 0 3 3 3 2 CBS domain NMO PF03060.15 gi|126179514|ref|YP_001047479.1| - 3.2e-06 26.8 13.2 3.5e-05 23.4 2.5 3.2 1 1 1 4 4 4 2 Nitronate monooxygenase His_biosynth PF00977.21 gi|126179514|ref|YP_001047479.1| - 2.4e-05 23.9 4.1 5.2e-05 22.8 4.1 1.6 1 0 0 1 1 1 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|126179514|ref|YP_001047479.1| - 0.00031 19.9 19.3 0.0026 16.9 19.0 2.5 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|126179514|ref|YP_001047479.1| - 0.00078 18.7 9.2 0.0023 17.1 8.7 1.9 2 0 0 2 2 2 1 Conserved region in glutamate synthase ThiG PF05690.14 gi|126179514|ref|YP_001047479.1| - 0.0025 17.2 1.6 0.0025 17.2 1.6 2.4 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|126179514|ref|YP_001047479.1| - 0.056 12.5 0.1 0.056 12.5 0.1 2.1 3 0 0 3 3 3 0 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.12 gi|126179514|ref|YP_001047479.1| - 0.17 11.3 3.5 0.34 10.3 0.1 2.6 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator Ribul_P_3_epim PF00834.19 gi|126179514|ref|YP_001047479.1| - 0.2 11.0 3.9 0.072 12.5 0.5 1.9 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family 4HFCP_synth PF04476.13 gi|126179515|ref|YP_001047480.1| - 3.3e-82 275.6 0.1 3.8e-82 275.4 0.1 1.0 1 0 0 1 1 1 1 4-HFC-P synthase His_biosynth PF00977.21 gi|126179516|ref|YP_001047481.1| - 7.3e-17 61.6 0.0 1e-16 61.1 0.0 1.2 1 0 0 1 1 1 1 Histidine biosynthesis protein PaaX PF07848.12 gi|126179516|ref|YP_001047481.1| - 0.16 12.2 0.1 1.1 9.6 0.0 2.2 3 0 0 3 3 3 0 PaaX-like protein Thymidylate_kin PF02223.17 gi|126179517|ref|YP_001047482.1| - 4.9e-41 140.4 0.0 5.7e-41 140.2 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 gi|126179517|ref|YP_001047482.1| - 8.5e-05 22.8 0.0 0.00014 22.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|126179517|ref|YP_001047482.1| - 0.00012 22.6 0.0 0.00036 21.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|126179517|ref|YP_001047482.1| - 0.02 15.1 0.0 0.19 11.9 0.0 2.0 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|126179517|ref|YP_001047482.1| - 0.031 14.2 0.0 0.069 13.1 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 gi|126179517|ref|YP_001047482.1| - 0.039 14.2 0.0 0.12 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain dNK PF01712.19 gi|126179517|ref|YP_001047482.1| - 0.065 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Deoxynucleoside kinase AAA_30 PF13604.6 gi|126179517|ref|YP_001047482.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain tRNA-synt_1 PF00133.22 gi|126179518|ref|YP_001047483.1| - 3.1e-126 422.1 0.1 4.4e-125 418.2 0.1 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|126179518|ref|YP_001047483.1| - 1.8e-36 125.4 0.0 3e-36 124.7 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|126179518|ref|YP_001047483.1| - 2.2e-21 76.1 0.1 9.3e-13 47.7 0.0 3.4 3 1 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|126179518|ref|YP_001047483.1| - 0.00055 19.5 0.0 0.0016 18.0 0.0 1.7 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|126179518|ref|YP_001047483.1| - 0.0024 17.2 0.0 0.69 9.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain DZR PF12773.7 gi|126179518|ref|YP_001047483.1| - 0.0083 16.1 3.5 0.19 11.8 0.2 3.2 3 0 0 3 3 3 1 Double zinc ribbon GCR1_C PF12550.8 gi|126179518|ref|YP_001047483.1| - 0.018 15.3 2.5 5.7 7.3 0.1 2.5 2 0 0 2 2 2 0 Transcriptional activator of glycolytic enzymes Zn-ribbon_8 PF09723.10 gi|126179518|ref|YP_001047483.1| - 2.1 8.5 4.2 0.67 10.1 0.6 2.1 2 0 0 2 2 2 0 Zinc ribbon domain DUF92 PF01940.16 gi|126179519|ref|YP_001047484.1| - 4.2e-52 176.9 18.3 4.2e-52 176.9 18.3 2.6 2 1 1 3 3 3 1 Integral membrane protein DUF92 DUF4013 PF13197.6 gi|126179521|ref|YP_001047486.1| - 2.8 7.8 36.0 0.23 11.3 21.4 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF4013) PK_C PF02887.16 gi|126179522|ref|YP_001047487.1| - 3.4e-15 56.3 1.2 4.6e-15 55.9 1.2 1.2 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain AP_endonuc_2 PF01261.24 gi|126179522|ref|YP_001047487.1| - 0.0013 18.2 0.1 0.028 13.9 0.1 2.5 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel MMR_HSR1_C PF08438.10 gi|126179523|ref|YP_001047488.1| - 1.7e-26 93.0 0.0 1e-25 90.5 0.0 2.0 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|126179523|ref|YP_001047488.1| - 1.5e-19 70.2 0.0 3.9e-19 68.8 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|126179523|ref|YP_001047488.1| - 2.4e-11 43.5 0.0 6e-11 42.2 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|126179523|ref|YP_001047488.1| - 1.4e-09 37.6 0.0 3.8e-08 33.0 0.0 2.7 3 0 0 3 3 3 1 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|126179523|ref|YP_001047488.1| - 0.071 13.1 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain ssDNA-exonuc_C PF10141.9 gi|126179524|ref|YP_001047489.1| - 0.058 13.0 0.0 0.12 12.0 0.0 1.4 1 1 0 1 1 1 0 Single-strand DNA-specific exonuclease, C terminal domain MatE PF01554.18 gi|126179525|ref|YP_001047490.1| - 1.9e-59 199.9 40.4 1e-31 109.8 14.6 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|126179525|ref|YP_001047490.1| - 4.4e-06 26.8 30.7 0.00027 21.0 9.0 4.4 2 1 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MpPF26 PF07666.11 gi|126179525|ref|YP_001047490.1| - 0.057 13.5 0.9 0.057 13.5 0.9 2.7 2 1 0 2 2 2 0 M penetrans paralogue family 26 DUF5455 PF17537.2 gi|126179526|ref|YP_001047491.1| - 0.12 12.8 0.5 0.12 12.8 0.5 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5455) TelA PF05816.11 gi|126179527|ref|YP_001047492.1| - 0.18 10.8 7.4 0.043 12.9 0.4 2.5 2 1 0 2 2 2 0 Toxic anion resistance protein (TelA) CTP_transf_like PF01467.26 gi|126179528|ref|YP_001047493.1| - 1.4e-14 54.5 0.0 1.9e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|126179528|ref|YP_001047493.1| - 0.08 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 FAD synthetase ATP-sulfurylase PF01747.17 gi|126179528|ref|YP_001047493.1| - 0.085 12.3 0.1 9.5 5.6 0.0 2.2 2 1 0 2 2 2 0 ATP-sulfurylase DUF2674 PF10879.8 gi|126179528|ref|YP_001047493.1| - 0.091 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2674) HIGH_NTase1 PF05636.11 gi|126179528|ref|YP_001047493.1| - 0.096 11.9 0.0 0.77 8.9 0.0 1.9 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase AIRC PF00731.20 gi|126179529|ref|YP_001047494.1| - 2.4e-17 62.9 2.7 3.9e-17 62.2 2.7 1.3 1 0 0 1 1 1 1 AIR carboxylase CP_ATPgrasp_2 PF14403.6 gi|126179529|ref|YP_001047494.1| - 0.0045 16.0 0.0 0.0064 15.5 0.0 1.1 1 0 0 1 1 1 1 Circularly permuted ATP-grasp type 2 FA_desaturase PF00487.24 gi|126179530|ref|YP_001047495.1| - 0.093 12.6 2.4 0.099 12.5 2.4 1.0 1 0 0 1 1 1 0 Fatty acid desaturase VirB3 PF05101.13 gi|126179530|ref|YP_001047495.1| - 0.53 10.6 5.0 0.31 11.3 1.0 2.0 1 1 1 2 2 2 0 Type IV secretory pathway, VirB3-like protein tRNA-synt_His PF13393.6 gi|126179531|ref|YP_001047496.1| - 1.9e-59 201.5 0.0 3.2e-59 200.7 0.0 1.3 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|126179531|ref|YP_001047496.1| - 2.2e-13 50.5 0.0 3.9e-13 49.8 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|126179531|ref|YP_001047496.1| - 2e-11 43.9 0.1 3.8e-11 43.0 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain CTP_transf_like PF01467.26 gi|126179531|ref|YP_001047496.1| - 0.1 12.8 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Cytidylyltransferase-like Topo-VIb_trans PF09239.11 gi|126179532|ref|YP_001047497.1| - 5.7e-63 211.5 0.0 1.1e-62 210.5 0.0 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|126179532|ref|YP_001047497.1| - 4.3e-11 43.3 0.0 8.7e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Top6b_C PF18000.1 gi|126179532|ref|YP_001047497.1| - 1.9e-09 37.7 0.0 4e-09 36.7 0.0 1.6 1 0 0 1 1 1 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c_3 PF13589.6 gi|126179532|ref|YP_001047497.1| - 3.8e-07 30.0 0.0 8.2e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|126179532|ref|YP_001047497.1| - 3.1e-05 22.9 0.6 0.0002 20.2 0.0 2.3 2 1 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.22 gi|126179532|ref|YP_001047497.1| - 0.061 13.7 0.0 0.27 11.6 0.0 2.0 2 0 0 2 2 2 0 Ribosomal protein S13/S18 H2TH PF06831.14 gi|126179532|ref|YP_001047497.1| - 0.12 12.3 0.0 0.31 11.1 0.0 1.6 1 0 0 1 1 1 0 Formamidopyrimidine-DNA glycosylase H2TH domain TP6A_N PF04406.14 gi|126179533|ref|YP_001047498.1| - 3e-16 59.1 0.6 6.2e-16 58.1 0.0 1.8 2 0 0 2 2 2 1 Type IIB DNA topoisomerase Polbeta PF18765.1 gi|126179534|ref|YP_001047499.1| - 3.1e-17 62.5 0.0 4e-17 62.1 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|126179535|ref|YP_001047500.1| - 7.3e-28 96.8 0.2 8.5e-28 96.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 Cyclase PF04199.13 gi|126179536|ref|YP_001047501.1| - 2.2e-18 66.8 0.0 2.6e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase HAD_2 PF13419.6 gi|126179537|ref|YP_001047502.1| - 7.4e-17 62.0 0.0 1.4e-16 61.1 0.0 1.4 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|126179537|ref|YP_001047502.1| - 4.6e-06 27.1 0.0 9.7e-05 22.7 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|126179537|ref|YP_001047502.1| - 1.2e-05 25.8 0.0 1.8e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|126179537|ref|YP_001047502.1| - 0.002 18.1 0.0 0.0036 17.3 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_3 PF08282.12 gi|126179537|ref|YP_001047502.1| - 0.0082 15.9 0.0 0.012 15.3 0.0 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|126179537|ref|YP_001047502.1| - 0.012 15.4 0.0 0.12 12.1 0.0 2.3 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase Put_Phosphatase PF06888.12 gi|126179537|ref|YP_001047502.1| - 0.059 12.8 0.0 0.74 9.2 0.0 2.3 1 1 1 2 2 2 0 Putative Phosphatase HAD_SAK_2 PF18143.1 gi|126179537|ref|YP_001047502.1| - 0.15 12.3 0.0 21 5.4 0.0 2.2 2 0 0 2 2 2 0 HAD domain in Swiss Army Knife RNA repair proteins Glycos_transf_1 PF00534.20 gi|126179539|ref|YP_001047504.1| - 1.4e-32 112.6 0.0 2.2e-32 112.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126179539|ref|YP_001047504.1| - 2.1e-27 96.2 0.0 3.8e-27 95.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126179539|ref|YP_001047504.1| - 2.9e-17 63.2 0.1 4.3e-17 62.6 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|126179539|ref|YP_001047504.1| - 1.9e-07 31.4 0.0 3.6e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|126179539|ref|YP_001047504.1| - 6.4e-05 23.4 0.0 0.00012 22.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|126179539|ref|YP_001047504.1| - 0.00097 18.9 0.2 0.61 9.7 0.2 2.3 1 1 1 2 2 2 2 Starch synthase catalytic domain DDE_Tnp_ISAZ013 PF07592.11 gi|126179539|ref|YP_001047504.1| - 0.046 12.7 0.0 0.067 12.2 0.0 1.2 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain Glycos_transf_2 PF00535.26 gi|126179540|ref|YP_001047505.1| - 3.4e-29 101.8 0.0 5.8e-29 101.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|126179540|ref|YP_001047505.1| - 4.1e-09 36.7 0.0 6e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|126179540|ref|YP_001047505.1| - 0.00093 18.7 0.3 0.0016 17.9 0.1 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Epimerase_2 PF02350.19 gi|126179541|ref|YP_001047506.1| - 7.8e-119 396.6 0.0 9.4e-119 396.3 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glycos_transf_1 PF00534.20 gi|126179542|ref|YP_001047507.1| - 3.2e-42 144.0 0.0 8.9e-42 142.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126179542|ref|YP_001047507.1| - 5.5e-32 111.0 0.1 1.9e-31 109.3 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126179542|ref|YP_001047507.1| - 3.8e-17 62.8 0.0 8.4e-17 61.7 0.1 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|126179542|ref|YP_001047507.1| - 3.2e-11 43.9 0.0 5.2e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|126179542|ref|YP_001047507.1| - 1e-08 35.3 0.0 1.9e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|126179542|ref|YP_001047507.1| - 1.7e-08 34.7 0.0 6e-08 33.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 PHP_C PF13263.6 gi|126179543|ref|YP_001047508.1| - 3.5e-12 45.9 0.0 2.3e-11 43.3 0.0 2.3 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|126179543|ref|YP_001047508.1| - 3.5e-11 43.7 0.0 4.4e-11 43.4 0.0 1.2 1 1 0 1 1 1 1 PHP domain ATPgrasp_Ter PF15632.6 gi|126179544|ref|YP_001047509.1| - 7.5e-09 35.4 0.0 1.3e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.17 gi|126179544|ref|YP_001047509.1| - 5.8e-08 32.5 0.0 0.0083 15.6 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.6 gi|126179544|ref|YP_001047509.1| - 7.8e-05 22.2 0.0 0.00017 21.1 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|126179544|ref|YP_001047509.1| - 0.008 16.2 0.0 0.019 15.0 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|126179544|ref|YP_001047509.1| - 0.011 15.3 0.0 0.19 11.2 0.0 2.2 2 0 0 2 2 2 0 D-ala D-ala ligase C-terminus RimK PF08443.11 gi|126179544|ref|YP_001047509.1| - 0.083 12.5 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 RimK-like ATP-grasp domain Glyphos_transf PF04464.14 gi|126179546|ref|YP_001047511.1| - 1.7e-76 257.6 0.0 2e-76 257.3 0.0 1.0 1 0 0 1 1 1 1 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase NTP_transf_3 PF12804.7 gi|126179547|ref|YP_001047512.1| - 5.6e-15 56.1 0.0 8.3e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|126179547|ref|YP_001047512.1| - 1.8e-06 27.7 0.0 3e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.19 gi|126179547|ref|YP_001047512.1| - 0.00017 21.4 0.0 0.00021 21.1 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NAD_Gly3P_dh_N PF01210.23 gi|126179548|ref|YP_001047513.1| - 3.9e-32 111.4 0.0 6.9e-32 110.6 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_Gly3P_dh_C PF07479.14 gi|126179548|ref|YP_001047513.1| - 1.9e-30 106.0 0.0 5.3e-30 104.6 0.0 1.8 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus F420_oxidored PF03807.17 gi|126179548|ref|YP_001047513.1| - 3.2e-07 30.8 0.4 8.9e-07 29.4 0.3 1.8 2 1 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|126179548|ref|YP_001047513.1| - 6.1e-05 22.7 0.0 0.0001 22.0 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 gi|126179548|ref|YP_001047513.1| - 0.00021 21.5 0.0 0.00051 20.2 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|126179548|ref|YP_001047513.1| - 0.00041 20.4 0.2 0.0012 18.9 0.3 1.8 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|126179548|ref|YP_001047513.1| - 0.001 19.3 0.1 0.0027 18.0 0.1 1.7 1 1 0 1 1 1 1 TrkA-N domain 3HCDH_N PF02737.18 gi|126179548|ref|YP_001047513.1| - 0.0013 18.6 0.0 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|126179548|ref|YP_001047513.1| - 0.014 14.9 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GFO_IDH_MocA PF01408.22 gi|126179548|ref|YP_001047513.1| - 0.027 15.3 0.0 0.13 13.1 0.0 2.1 1 1 1 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|126179548|ref|YP_001047513.1| - 0.042 13.2 0.1 0.078 12.3 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|126179548|ref|YP_001047513.1| - 0.045 14.0 0.0 0.095 13.0 0.0 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox PF00070.27 gi|126179548|ref|YP_001047513.1| - 0.078 13.6 0.1 0.19 12.3 0.1 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Rossmann-like PF10727.9 gi|126179548|ref|YP_001047513.1| - 0.1 12.5 1.3 0.45 10.4 1.3 1.9 1 1 0 1 1 1 0 Rossmann-like domain AcetylCoA_hydro PF02550.15 gi|126179548|ref|YP_001047513.1| - 0.15 12.0 0.0 0.27 11.2 0.0 1.3 1 0 0 1 1 1 0 Acetyl-CoA hydrolase/transferase N-terminal domain Glycos_transf_1 PF00534.20 gi|126179549|ref|YP_001047514.1| - 3.4e-19 69.0 0.0 7.1e-19 68.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126179549|ref|YP_001047514.1| - 6.7e-19 68.6 0.0 1.6e-18 67.4 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126179549|ref|YP_001047514.1| - 2.3e-09 37.5 0.1 4.3e-09 36.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|126179549|ref|YP_001047514.1| - 1.5e-05 25.3 0.3 0.00048 20.5 0.0 2.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|126179549|ref|YP_001047514.1| - 0.014 15.8 0.0 0.029 14.8 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|126179550|ref|YP_001047515.1| - 3.4e-20 72.8 0.0 7.2e-20 71.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|126179550|ref|YP_001047515.1| - 6.6e-20 71.3 0.0 2e-19 69.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126179550|ref|YP_001047515.1| - 1.1e-15 58.1 0.0 1.6e-15 57.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|126179550|ref|YP_001047515.1| - 6.2e-14 52.2 0.0 1.2e-13 51.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|126179550|ref|YP_001047515.1| - 8.2e-14 52.4 0.0 1.3e-13 51.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|126179550|ref|YP_001047515.1| - 4e-07 30.1 0.0 6.7e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|126179550|ref|YP_001047515.1| - 0.086 12.5 0.0 2 8.0 0.0 2.2 1 1 1 2 2 2 0 Starch synthase catalytic domain Epimerase_2 PF02350.19 gi|126179551|ref|YP_001047516.1| - 5.3e-116 387.3 0.0 6.2e-116 387.0 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_2 PF13477.6 gi|126179551|ref|YP_001047516.1| - 0.0026 17.8 0.0 0.0057 16.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|126179551|ref|YP_001047516.1| - 0.014 15.4 0.0 0.044 13.8 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase Family 4 APH PF01636.23 gi|126179551|ref|YP_001047516.1| - 0.065 13.1 0.0 0.18 11.7 0.0 1.6 2 0 0 2 2 2 0 Phosphotransferase enzyme family UDPG_MGDP_dh_N PF03721.14 gi|126179552|ref|YP_001047517.1| - 2.7e-33 115.1 0.0 4.4e-33 114.4 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|126179552|ref|YP_001047517.1| - 1.7e-22 79.8 0.0 5.2e-22 78.3 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 gi|126179552|ref|YP_001047517.1| - 9.1e-20 70.7 0.0 2.6e-19 69.2 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain Semialdhyde_dh PF01118.24 gi|126179552|ref|YP_001047517.1| - 0.0017 18.8 0.0 0.3 11.5 0.0 2.9 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|126179553|ref|YP_001047518.1| - 4.6e-15 56.5 0.0 8.1e-15 55.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Polysacc_synt_C PF14667.6 gi|126179554|ref|YP_001047519.1| - 8.2e-23 81.1 20.8 8.2e-23 81.1 20.8 4.2 3 1 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|126179554|ref|YP_001047519.1| - 1.5e-17 63.8 13.5 1.5e-17 63.8 13.5 2.5 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|126179554|ref|YP_001047519.1| - 2.3e-13 50.2 27.9 2.3e-13 50.2 27.9 3.1 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|126179554|ref|YP_001047519.1| - 6.7e-10 38.1 36.7 4.2e-09 35.5 36.7 2.1 1 1 0 1 1 1 1 Lipid II flippase MurJ MatE PF01554.18 gi|126179554|ref|YP_001047519.1| - 1.2e-09 38.1 10.3 1.2e-09 38.1 10.3 4.3 3 1 0 3 3 3 1 MatE DUF2178 PF09946.9 gi|126179554|ref|YP_001047519.1| - 0.033 14.4 1.1 0.033 14.4 1.1 3.9 3 1 1 4 4 4 0 Predicted membrane protein (DUF2178) Ge1_WD40 PF16529.5 gi|126179554|ref|YP_001047519.1| - 0.26 10.2 0.6 0.4 9.6 0.6 1.2 1 0 0 1 1 1 0 WD40 region of Ge1, enhancer of mRNA-decapping protein DUF4235 PF14019.6 gi|126179554|ref|YP_001047519.1| - 1.5 8.9 0.0 1.5 8.9 0.0 3.6 2 1 0 2 2 2 0 Protein of unknown function (DUF4235) Acetyltransf_1 PF00583.25 gi|126179555|ref|YP_001047520.1| - 1.3e-06 28.6 0.1 1.7e-06 28.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|126179555|ref|YP_001047520.1| - 2.7e-06 27.7 0.0 4e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|126179555|ref|YP_001047520.1| - 6.1e-06 26.2 0.0 8.3e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|126179555|ref|YP_001047520.1| - 0.00028 21.0 0.0 0.0015 18.7 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|126179555|ref|YP_001047520.1| - 0.0065 16.4 0.1 0.037 14.0 0.1 2.1 2 1 0 2 2 2 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|126179555|ref|YP_001047520.1| - 0.054 14.2 0.0 0.059 14.0 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|126179555|ref|YP_001047520.1| - 0.15 11.6 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase DUF2150 PF09920.9 gi|126179557|ref|YP_001047522.1| - 1.8e-60 204.1 2.8 2.1e-60 204.0 2.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) RNase_PH_C PF03725.15 gi|126179557|ref|YP_001047522.1| - 0.023 14.7 0.2 0.047 13.7 0.2 1.7 1 0 0 1 1 1 0 3' exoribonuclease family, domain 2 WAC_Acf1_DNA_bd PF10537.9 gi|126179557|ref|YP_001047522.1| - 0.11 13.0 0.1 0.2 12.2 0.1 1.3 1 0 0 1 1 1 0 ATP-utilising chromatin assembly and remodelling N-terminal TrpBP PF02081.15 gi|126179557|ref|YP_001047522.1| - 0.12 12.3 0.7 2.3 8.1 0.1 2.2 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein HD_4 PF13328.6 gi|126179557|ref|YP_001047522.1| - 0.17 11.6 0.0 17 5.1 0.0 2.1 2 0 0 2 2 2 0 HD domain Asn_synthase PF00733.21 gi|126179558|ref|YP_001047523.1| - 6e-10 39.3 0.0 8.6e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|126179558|ref|YP_001047523.1| - 4.8e-09 36.0 0.0 3.7e-07 29.9 0.0 2.4 1 1 1 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|126179558|ref|YP_001047523.1| - 7.4e-05 22.6 0.0 0.00011 22.0 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|126179558|ref|YP_001047523.1| - 8e-05 22.7 0.0 0.00011 22.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.14 gi|126179558|ref|YP_001047523.1| - 0.0001 21.9 0.0 0.00047 19.8 0.0 2.1 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) NAD_synthase PF02540.17 gi|126179558|ref|YP_001047523.1| - 0.00011 21.4 0.0 0.0046 16.1 0.0 2.1 2 0 0 2 2 2 1 NAD synthase tRNA_Me_trans PF03054.16 gi|126179558|ref|YP_001047523.1| - 0.00087 18.2 0.0 0.0016 17.3 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase GGDEF_2 PF17853.1 gi|126179558|ref|YP_001047523.1| - 0.002 18.4 2.9 0.022 15.0 0.3 2.5 2 1 0 2 2 2 1 GGDEF-like domain Arginosuc_synth PF00764.19 gi|126179558|ref|YP_001047523.1| - 0.012 15.0 0.0 0.019 14.2 0.0 1.5 1 1 0 1 1 1 0 Arginosuccinate synthase TraF PF13728.6 gi|126179558|ref|YP_001047523.1| - 0.15 11.8 0.0 0.24 11.2 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein PNP_UDP_1 PF01048.20 gi|126179558|ref|YP_001047523.1| - 0.24 10.6 2.7 8.2 5.6 0.0 2.6 1 1 1 2 2 2 0 Phosphorylase superfamily ThiI PF02568.14 gi|126179559|ref|YP_001047524.1| - 2.4e-57 193.7 0.0 4e-57 193.0 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|126179559|ref|YP_001047524.1| - 5.5e-14 52.5 0.0 9.2e-14 51.8 0.0 1.4 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|126179559|ref|YP_001047524.1| - 0.1 12.1 0.0 7.9 5.9 0.0 2.5 2 1 0 2 2 2 0 Queuosine biosynthesis protein QueC Aminotran_5 PF00266.19 gi|126179560|ref|YP_001047525.1| - 1.3e-24 86.8 0.3 2.2e-24 86.1 0.3 1.2 1 0 0 1 1 1 1 Aminotransferase class-V SepSecS PF05889.13 gi|126179560|ref|YP_001047525.1| - 1.8e-23 82.9 0.0 2.7e-23 82.3 0.0 1.2 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS DegT_DnrJ_EryC1 PF01041.17 gi|126179560|ref|YP_001047525.1| - 1.2e-07 31.4 1.1 1.8e-07 30.8 1.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|126179560|ref|YP_001047525.1| - 9.6e-05 21.8 0.0 0.00015 21.1 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|126179560|ref|YP_001047525.1| - 0.0001 21.0 0.2 0.00022 19.9 0.2 1.7 1 1 1 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|126179560|ref|YP_001047525.1| - 0.00025 20.3 0.1 0.00036 19.8 0.1 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II OKR_DC_1 PF01276.20 gi|126179560|ref|YP_001047525.1| - 0.0014 17.5 0.1 0.0032 16.3 0.0 1.5 1 1 1 2 2 2 1 Orn/Lys/Arg decarboxylase, major domain Glyco_trans_1_4 PF13692.6 gi|126179560|ref|YP_001047525.1| - 0.14 12.6 2.1 0.54 10.7 0.1 2.3 2 1 0 2 2 2 0 Glycosyl transferases group 1 ApoL PF05461.11 gi|126179561|ref|YP_001047526.1| - 0.01 15.2 0.2 0.01 15.2 0.2 1.0 1 0 0 1 1 1 0 Apolipoprotein L TPR_6 PF13174.6 gi|126179561|ref|YP_001047526.1| - 0.11 13.2 0.0 0.18 12.5 0.0 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat Metallophos_2 PF12850.7 gi|126179562|ref|YP_001047527.1| - 5.7e-12 46.1 0.4 1.4e-11 44.9 0.4 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|126179562|ref|YP_001047527.1| - 4.9e-11 43.5 0.2 8.3e-11 42.8 0.2 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase SMC_N PF02463.19 gi|126179563|ref|YP_001047528.1| - 1e-18 67.6 0.0 2.6e-18 66.3 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|126179563|ref|YP_001047528.1| - 2e-14 54.6 12.8 2e-14 54.6 12.8 4.9 2 2 0 2 2 1 1 AAA domain AAA_15 PF13175.6 gi|126179563|ref|YP_001047528.1| - 1.8e-08 34.5 0.1 4.1e-08 33.3 0.1 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|126179563|ref|YP_001047528.1| - 1.9e-05 24.3 0.1 3.6e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|126179563|ref|YP_001047528.1| - 4.6e-05 23.9 0.6 0.041 14.4 0.0 4.2 4 2 0 4 4 4 1 ABC transporter AAA_27 PF13514.6 gi|126179563|ref|YP_001047528.1| - 5.2e-05 22.9 0.0 5.2e-05 22.9 0.0 3.8 3 1 0 4 4 4 1 AAA domain SbcCD_C PF13558.6 gi|126179563|ref|YP_001047528.1| - 0.00022 21.4 0.0 0.00062 20.0 0.0 1.9 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_21 PF13304.6 gi|126179563|ref|YP_001047528.1| - 0.0087 15.9 2.0 0.024 14.4 0.1 2.3 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system Sec34 PF04136.15 gi|126179563|ref|YP_001047528.1| - 0.17 11.8 15.8 2 8.3 0.0 6.2 7 1 1 8 8 7 0 Sec34-like family DUF1664 PF07889.12 gi|126179563|ref|YP_001047528.1| - 0.22 11.6 11.4 3.7 7.6 0.1 6.2 5 3 2 7 7 7 0 Protein of unknown function (DUF1664) FlaC_arch PF05377.11 gi|126179563|ref|YP_001047528.1| - 0.26 11.7 12.5 13 6.3 0.1 6.9 6 1 1 7 7 7 0 Flagella accessory protein C (FlaC) DUF5082 PF16888.5 gi|126179563|ref|YP_001047528.1| - 0.43 10.8 31.6 1.1 9.5 0.8 8.1 7 2 1 8 8 8 0 Domain of unknown function (DUF5082) DUF4795 PF16043.5 gi|126179563|ref|YP_001047528.1| - 0.54 9.8 21.5 24 4.5 0.3 6.0 4 2 0 4 4 4 0 Domain of unknown function (DUF4795) Rad50_zn_hook PF04423.14 gi|126179563|ref|YP_001047528.1| - 0.71 9.8 4.0 1 9.2 0.0 3.7 3 0 0 3 3 3 0 Rad50 zinc hook motif FAM76 PF16046.5 gi|126179563|ref|YP_001047528.1| - 4.4 6.6 8.4 2 7.7 1.2 3.3 1 1 2 3 3 3 0 FAM76 protein IFT57 PF10498.9 gi|126179563|ref|YP_001047528.1| - 5.2 5.9 21.2 2.2 7.2 0.6 5.2 4 2 1 6 6 6 0 Intra-flagellar transport protein 57 CT_C_D PF02682.16 gi|126179563|ref|YP_001047528.1| - 7.7 6.2 7.8 4.7 6.9 0.3 3.3 3 1 0 3 3 3 0 Carboxyltransferase domain, subdomain C and D NurA PF09376.10 gi|126179564|ref|YP_001047529.1| - 1.4e-10 41.3 0.0 8e-05 22.4 0.0 2.2 2 0 0 2 2 2 2 NurA domain DUF87 PF01935.17 gi|126179565|ref|YP_001047530.1| - 1.1e-27 97.6 0.0 1.5e-27 97.2 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|126179565|ref|YP_001047530.1| - 0.0001 21.4 0.1 0.00059 18.9 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.12 gi|126179565|ref|YP_001047530.1| - 0.00089 18.0 0.1 0.0022 16.7 0.0 1.6 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) tRNA_anti-codon PF01336.25 gi|126179566|ref|YP_001047531.1| - 9.3e-05 22.3 1.2 0.00055 19.9 1.3 2.1 1 1 1 2 2 2 1 OB-fold nucleic acid binding domain Tom22 PF04281.13 gi|126179566|ref|YP_001047531.1| - 0.034 13.9 0.1 0.047 13.5 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 DUF4131 PF13567.6 gi|126179566|ref|YP_001047531.1| - 0.11 12.1 0.8 0.22 11.2 0.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Peptidase_M56 PF05569.11 gi|126179566|ref|YP_001047531.1| - 0.17 11.1 1.7 0.2 10.8 1.7 1.1 1 0 0 1 1 1 0 BlaR1 peptidase M56 FA_desaturase PF00487.24 gi|126179566|ref|YP_001047531.1| - 0.43 10.4 1.8 0.5 10.2 1.8 1.1 1 0 0 1 1 1 0 Fatty acid desaturase E1-E2_ATPase PF00122.20 gi|126179566|ref|YP_001047531.1| - 7.2 6.1 6.8 23 4.5 4.1 2.1 2 0 0 2 2 2 0 E1-E2 ATPase Form_Nir_trans PF01226.17 gi|126179567|ref|YP_001047532.1| - 4.9e-79 265.0 30.4 5.5e-79 264.8 30.4 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter Voltage_CLC PF00654.20 gi|126179568|ref|YP_001047533.1| - 7.6e-83 278.7 42.0 7.6e-83 278.7 42.0 2.0 2 0 0 2 2 2 1 Voltage gated chloride channel CBS PF00571.28 gi|126179568|ref|YP_001047533.1| - 1.1e-20 73.8 4.9 5.3e-12 46.0 0.1 2.5 2 0 0 2 2 2 2 CBS domain DUF2154 PF09922.9 gi|126179568|ref|YP_001047533.1| - 0.17 11.8 0.3 0.39 10.6 0.3 1.6 1 0 0 1 1 1 0 Cell wall-active antibiotics response 4TMS YvqF AcrZ PF10766.9 gi|126179568|ref|YP_001047533.1| - 5 6.8 9.9 2.2 7.9 2.5 3.6 3 0 0 3 3 3 0 Multidrug efflux pump-associated protein AcrZ FrhB_FdhB_C PF04432.13 gi|126179569|ref|YP_001047534.1| - 2.3e-34 118.5 1.0 2.9e-34 118.1 0.1 1.6 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|126179569|ref|YP_001047534.1| - 5.8e-19 68.0 0.0 1.3e-18 66.9 0.0 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.27 gi|126179569|ref|YP_001047534.1| - 2.6e-06 27.0 18.3 0.00018 21.2 2.9 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126179569|ref|YP_001047534.1| - 2.9e-05 24.1 14.8 0.003 17.7 0.1 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126179569|ref|YP_001047534.1| - 0.0012 19.4 20.0 0.0018 18.8 17.0 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126179569|ref|YP_001047534.1| - 0.0018 18.4 18.9 0.023 14.8 17.3 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126179569|ref|YP_001047534.1| - 0.0021 18.6 18.7 0.0038 17.7 15.8 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|126179569|ref|YP_001047534.1| - 0.0058 17.5 15.7 0.34 11.8 0.5 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|126179569|ref|YP_001047534.1| - 0.008 15.9 11.3 0.18 11.6 0.4 2.7 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_8 PF13183.6 gi|126179569|ref|YP_001047534.1| - 0.011 16.2 19.7 0.097 13.1 18.8 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126179569|ref|YP_001047534.1| - 0.012 15.7 1.2 0.012 15.7 1.2 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|126179569|ref|YP_001047534.1| - 0.014 15.8 3.0 0.014 15.8 3.0 3.8 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|126179569|ref|YP_001047534.1| - 0.021 14.9 2.1 0.021 14.9 2.1 3.8 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|126179569|ref|YP_001047534.1| - 0.081 13.1 10.1 1.6 9.0 0.7 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126179569|ref|YP_001047534.1| - 0.19 12.7 0.6 0.19 12.7 0.6 3.0 3 0 0 3 3 2 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|126179569|ref|YP_001047534.1| - 1.9 8.7 25.5 3.7 7.7 21.4 2.7 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|126179569|ref|YP_001047534.1| - 3.9 8.1 17.1 2.9 8.5 2.5 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Molybdopterin PF00384.22 gi|126179570|ref|YP_001047535.1| - 7.3e-93 311.9 0.0 8.8e-93 311.6 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|126179570|ref|YP_001047535.1| - 2.6e-33 114.4 0.0 5.4e-33 113.3 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|126179570|ref|YP_001047535.1| - 1e-18 67.0 0.4 2.2e-18 65.9 0.4 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain DUF2934 PF11154.8 gi|126179570|ref|YP_001047535.1| - 1.8 8.3 3.8 1.6 8.4 1.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2934) GntP_permease PF02447.16 gi|126179571|ref|YP_001047536.1| - 1.1e-30 106.7 29.2 5.7e-18 64.8 10.7 2.1 2 0 0 2 2 2 2 GntP family permease Na_H_antiporter PF03553.14 gi|126179571|ref|YP_001047536.1| - 0.0069 15.7 24.7 0.19 10.9 3.5 2.4 2 0 0 2 2 2 2 Na+/H+ antiporter family N6_N4_Mtase PF01555.18 gi|126179572|ref|YP_001047537.1| - 9.3e-48 162.9 0.0 1.1e-47 162.7 0.0 1.0 1 0 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 gi|126179572|ref|YP_001047537.1| - 0.0021 17.8 0.1 1.6 8.4 0.0 2.2 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 GATase_5 PF13507.6 gi|126179574|ref|YP_001047539.1| - 3.9e-72 242.5 0.0 4.3e-72 242.3 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.14 gi|126179574|ref|YP_001047539.1| - 0.00064 19.4 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|126179574|ref|YP_001047539.1| - 0.0039 17.0 0.0 0.011 15.5 0.0 1.8 1 1 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|126179574|ref|YP_001047539.1| - 0.031 14.1 0.0 0.089 12.5 0.0 1.6 1 1 0 1 1 1 0 Glutamine amidotransferase class-I AIRS_C PF02769.22 gi|126179575|ref|YP_001047540.1| - 7.1e-38 130.2 2.5 7.5e-26 91.1 0.0 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|126179575|ref|YP_001047540.1| - 3.7e-16 59.4 0.0 1.2e-15 57.8 0.0 1.8 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain AIRS PF00586.24 gi|126179575|ref|YP_001047540.1| - 8.2e-14 52.0 0.0 1.3e-08 35.4 0.0 2.8 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain MJ1316 PF04457.12 gi|126179577|ref|YP_001047542.1| - 3.7e-19 69.2 0.0 4.1e-19 69.1 0.0 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain Radical_SAM PF04055.21 gi|126179578|ref|YP_001047543.1| - 1.3e-16 61.5 7.9 1.2e-14 55.0 7.9 2.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|126179578|ref|YP_001047543.1| - 0.22 11.8 0.9 0.65 10.3 0.9 1.8 1 1 0 1 1 1 0 4Fe-4S single cluster domain GATase PF00117.28 gi|126179579|ref|YP_001047544.1| - 3.8e-13 49.6 0.0 4.3e-13 49.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|126179579|ref|YP_001047544.1| - 0.0041 16.9 0.0 0.61 9.8 0.0 2.1 1 1 0 1 1 1 1 Peptidase C26 Diphthami_syn_2 PF01902.17 gi|126179580|ref|YP_001047545.1| - 4.1e-74 248.8 0.0 4.7e-74 248.6 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase Utp21 PF04192.12 gi|126179581|ref|YP_001047546.1| - 0.082 12.4 0.1 0.082 12.4 0.1 1.1 1 0 0 1 1 1 0 Utp21 specific WD40 associated putative domain Rop-like PF05082.13 gi|126179581|ref|YP_001047546.1| - 0.087 12.7 0.4 0.13 12.1 0.4 1.3 1 0 0 1 1 1 0 Rop-like NTP_transf_2 PF01909.23 gi|126179582|ref|YP_001047547.1| - 8.3e-13 48.5 0.0 9.4e-13 48.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|126179582|ref|YP_001047547.1| - 4.2e-11 42.8 0.0 4.6e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase ParE_toxin PF05016.15 gi|126179583|ref|YP_001047548.1| - 0.06 14.0 0.0 0.089 13.4 0.0 1.3 1 1 0 1 1 1 0 ParE toxin of type II toxin-antitoxin system, parDE SelB-wing_2 PF09106.11 gi|126179584|ref|YP_001047549.1| - 0.029 14.6 0.0 0.056 13.7 0.0 1.6 1 1 0 1 1 1 0 Elongation factor SelB, winged helix ESCRT-II PF05871.12 gi|126179584|ref|YP_001047549.1| - 0.054 13.8 0.0 0.062 13.5 0.0 1.2 1 0 0 1 1 1 0 ESCRT-II complex subunit Penicillinase_R PF03965.16 gi|126179584|ref|YP_001047549.1| - 0.16 12.4 0.0 0.17 12.2 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor DHquinase_I PF01487.15 gi|126179585|ref|YP_001047550.1| - 0.041 14.1 0.1 0.05 13.9 0.1 1.1 1 0 0 1 1 1 0 Type I 3-dehydroquinase CPSase_L_D2 PF02786.17 gi|126179586|ref|YP_001047551.1| - 1.4e-74 250.2 0.8 2.2e-74 249.5 0.8 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|126179586|ref|YP_001047551.1| - 1e-46 158.0 0.0 2.6e-46 156.7 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|126179586|ref|YP_001047551.1| - 3.2e-39 133.4 0.0 5.9e-39 132.5 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|126179586|ref|YP_001047551.1| - 3.5e-13 49.6 0.0 9e-13 48.2 0.0 1.7 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.11 gi|126179586|ref|YP_001047551.1| - 2.1e-08 34.0 0.1 1.1e-07 31.7 0.1 2.0 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp PF02222.22 gi|126179586|ref|YP_001047551.1| - 1.4e-05 24.7 0.1 2.5e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|126179586|ref|YP_001047551.1| - 2.7e-05 24.0 0.0 4.9e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.14 gi|126179586|ref|YP_001047551.1| - 4.8e-05 23.5 0.0 8.9e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|126179586|ref|YP_001047551.1| - 0.01 15.3 0.0 0.023 14.2 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|126179586|ref|YP_001047551.1| - 0.016 14.9 0.0 0.034 13.9 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon PYC_OADA PF02436.18 gi|126179587|ref|YP_001047552.1| - 3.8e-56 190.0 0.0 1e-55 188.6 0.0 1.7 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|126179587|ref|YP_001047552.1| - 9.2e-43 146.7 0.0 1.4e-42 146.1 0.0 1.3 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|126179587|ref|YP_001047552.1| - 7.2e-19 67.4 1.4 2e-18 66.0 1.4 1.8 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|126179587|ref|YP_001047552.1| - 9.4e-09 35.0 0.5 0.00012 21.8 0.2 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_D23 PF16576.5 gi|126179587|ref|YP_001047552.1| - 5.2e-05 22.6 0.5 0.15 11.3 0.0 2.7 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|126179587|ref|YP_001047552.1| - 0.00012 22.7 1.7 0.012 16.3 0.1 3.0 3 0 0 3 3 3 1 HlyD family secretion protein GCV_H PF01597.19 gi|126179587|ref|YP_001047552.1| - 0.011 15.7 0.1 0.028 14.3 0.1 1.7 1 0 0 1 1 1 0 Glycine cleavage H-protein CbiQ PF02361.16 gi|126179588|ref|YP_001047553.1| - 0.0086 15.7 10.6 0.08 12.5 10.6 2.2 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|126179589|ref|YP_001047554.1| - 1.3e-14 54.9 0.0 1.8e-13 51.2 0.0 2.1 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126179589|ref|YP_001047554.1| - 1.7e-06 28.1 0.6 0.0012 18.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126179589|ref|YP_001047554.1| - 0.00011 21.7 0.0 0.16 11.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|126179589|ref|YP_001047554.1| - 0.0028 17.4 0.1 0.005 16.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|126179589|ref|YP_001047554.1| - 0.012 16.0 0.1 0.018 15.4 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|126179589|ref|YP_001047554.1| - 0.062 13.6 0.1 0.087 13.1 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|126179589|ref|YP_001047554.1| - 0.12 11.9 0.2 0.27 10.8 0.2 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|126179589|ref|YP_001047554.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|126179589|ref|YP_001047554.1| - 0.17 12.4 0.1 0.25 11.8 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|126179589|ref|YP_001047554.1| - 0.18 12.3 0.0 0.3 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|126179589|ref|YP_001047554.1| - 0.19 10.8 0.1 0.3 10.1 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein ABC_tran PF00005.27 gi|126179590|ref|YP_001047555.1| - 2.6e-19 70.1 0.0 3.9e-19 69.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|126179590|ref|YP_001047555.1| - 2.1e-10 40.4 0.0 1.1e-05 25.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|126179590|ref|YP_001047555.1| - 7.8e-08 32.5 0.0 0.0017 18.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|126179590|ref|YP_001047555.1| - 3.4e-05 24.1 0.1 0.00034 20.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|126179590|ref|YP_001047555.1| - 0.00097 18.9 0.2 0.16 11.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|126179590|ref|YP_001047555.1| - 0.0018 18.7 0.6 0.0071 16.8 0.6 1.8 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 gi|126179590|ref|YP_001047555.1| - 0.0047 17.1 0.4 0.04 14.2 0.4 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DLIC PF05783.11 gi|126179590|ref|YP_001047555.1| - 0.0076 15.1 0.0 0.011 14.6 0.0 1.2 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) DEAD PF00270.29 gi|126179590|ref|YP_001047555.1| - 0.0078 16.0 0.0 0.8 9.4 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_29 PF13555.6 gi|126179590|ref|YP_001047555.1| - 0.011 15.5 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|126179590|ref|YP_001047555.1| - 0.024 15.2 0.0 0.034 14.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|126179590|ref|YP_001047555.1| - 0.025 15.0 0.5 1.1 9.7 0.5 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|126179590|ref|YP_001047555.1| - 0.036 14.0 0.0 0.15 11.9 0.0 1.9 2 1 0 2 2 2 0 NACHT domain DUF87 PF01935.17 gi|126179590|ref|YP_001047555.1| - 0.039 14.0 0.0 0.057 13.5 0.0 1.2 1 0 0 1 1 1 0 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|126179590|ref|YP_001047555.1| - 0.045 13.1 0.1 0.33 10.3 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_24 PF13479.6 gi|126179590|ref|YP_001047555.1| - 0.048 13.4 0.0 0.071 12.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|126179590|ref|YP_001047555.1| - 0.054 13.1 0.5 0.16 11.5 0.5 1.8 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|126179590|ref|YP_001047555.1| - 0.06 12.8 0.0 3.3 7.1 0.0 2.2 1 1 0 2 2 2 0 Bacterial TniB protein ATP_bind_1 PF03029.17 gi|126179590|ref|YP_001047555.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Mg_chelatase PF01078.21 gi|126179590|ref|YP_001047555.1| - 0.14 11.6 0.2 2.6 7.4 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 gi|126179590|ref|YP_001047555.1| - 0.14 11.2 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_15 PF13175.6 gi|126179590|ref|YP_001047555.1| - 0.43 10.2 0.8 0.48 10.1 0.1 1.3 1 1 1 2 2 2 0 AAA ATPase domain BioY PF02632.14 gi|126179591|ref|YP_001047556.1| - 8.3e-36 123.0 17.9 1.1e-35 122.6 17.9 1.2 1 0 0 1 1 1 1 BioY family ECF-ribofla_trS PF07155.12 gi|126179591|ref|YP_001047556.1| - 0.04 13.9 15.6 0.4 10.7 2.1 2.5 1 1 1 2 2 2 0 ECF-type riboflavin transporter, S component BPL_LplA_LipB PF03099.19 gi|126179592|ref|YP_001047557.1| - 3.7e-15 56.0 0.0 5.6e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|126179592|ref|YP_001047557.1| - 1.3e-13 50.6 0.1 3.2e-13 49.4 0.1 1.7 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.17 gi|126179592|ref|YP_001047557.1| - 1e-08 34.9 0.1 2.2e-08 33.9 0.1 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.6 gi|126179592|ref|YP_001047557.1| - 2.9e-07 29.9 0.0 5.9e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|126179592|ref|YP_001047557.1| - 5e-05 23.2 0.2 0.015 15.3 0.0 2.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain BPL_LplA_LipB_2 PF16917.5 gi|126179592|ref|YP_001047557.1| - 0.0001 21.9 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_IclR PF09339.10 gi|126179592|ref|YP_001047557.1| - 0.00026 20.7 0.0 0.00055 19.7 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|126179592|ref|YP_001047557.1| - 0.00032 20.8 0.0 0.00073 19.7 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.27 gi|126179592|ref|YP_001047557.1| - 0.00073 19.4 0.1 0.0022 17.9 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 gi|126179592|ref|YP_001047557.1| - 0.0014 18.4 0.0 0.0043 16.9 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|126179592|ref|YP_001047557.1| - 0.0031 17.3 0.0 0.0089 15.8 0.0 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_39 PF14090.6 gi|126179592|ref|YP_001047557.1| - 0.0097 15.6 0.1 0.034 13.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|126179592|ref|YP_001047557.1| - 0.0099 15.8 0.1 0.058 13.4 0.1 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|126179592|ref|YP_001047557.1| - 0.015 15.7 0.0 0.035 14.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_10 PF04967.12 gi|126179592|ref|YP_001047557.1| - 0.022 14.6 0.0 0.059 13.2 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain HTH_5 PF01022.20 gi|126179592|ref|YP_001047557.1| - 0.027 14.3 0.0 0.051 13.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|126179592|ref|YP_001047557.1| - 0.031 14.1 0.3 0.083 12.7 0.3 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_12 PF08461.10 gi|126179592|ref|YP_001047557.1| - 0.069 13.1 0.3 0.35 10.9 0.0 2.4 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_20 PF12840.7 gi|126179592|ref|YP_001047557.1| - 0.069 13.2 0.0 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_CodY PF08222.11 gi|126179592|ref|YP_001047557.1| - 0.082 12.5 0.0 0.22 11.1 0.0 1.7 1 0 0 1 1 1 0 CodY helix-turn-helix domain MarR PF01047.22 gi|126179592|ref|YP_001047557.1| - 0.083 12.8 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|126179592|ref|YP_001047557.1| - 0.15 12.0 0.0 0.39 10.6 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2111 PF09884.9 gi|126179593|ref|YP_001047558.1| - 8.1e-38 128.4 0.6 1.2e-37 127.8 0.6 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) BPL_N PF09825.9 gi|126179594|ref|YP_001047559.1| - 2.9e-05 23.3 0.1 5.6e-05 22.4 0.0 1.5 2 0 0 2 2 2 1 Biotin-protein ligase, N terminal SIS_2 PF13580.6 gi|126179594|ref|YP_001047559.1| - 0.072 13.1 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 SIS domain RtcB PF01139.17 gi|126179595|ref|YP_001047560.1| - 1.8e-162 541.3 0.0 2e-162 541.1 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB FIST_C PF10442.9 gi|126179595|ref|YP_001047560.1| - 0.12 12.3 0.2 0.84 9.6 0.1 2.3 1 1 2 3 3 3 0 FIST C domain Archease PF01951.16 gi|126179596|ref|YP_001047561.1| - 2.7e-35 121.6 0.0 3e-35 121.5 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) DUF2242 PF10001.9 gi|126179597|ref|YP_001047562.1| - 0.085 13.0 0.0 0.096 12.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2242) DUF2551 PF10826.8 gi|126179598|ref|YP_001047563.1| - 5.6e-35 119.4 0.5 6.6e-35 119.2 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.16 gi|126179598|ref|YP_001047563.1| - 0.1 13.0 0.0 0.2 12.0 0.0 1.6 1 1 1 2 2 2 0 Penicillinase repressor SecD_SecF PF02355.16 gi|126179599|ref|YP_001047564.1| - 1.3e-32 112.8 12.5 2e-32 112.1 12.5 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|126179599|ref|YP_001047564.1| - 0.0079 15.7 0.1 0.017 14.6 0.1 1.5 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.15 gi|126179599|ref|YP_001047564.1| - 0.45 9.4 19.8 0.75 8.7 19.8 1.3 1 0 0 1 1 1 0 MMPL family SecD_SecF PF02355.16 gi|126179600|ref|YP_001047565.1| - 2.6e-11 43.3 12.3 2.6e-11 43.3 12.3 1.9 2 0 0 2 2 2 1 Protein export membrane protein MMPL PF03176.15 gi|126179600|ref|YP_001047565.1| - 0.01 14.8 21.8 0.022 13.7 21.8 1.5 1 0 0 1 1 1 0 MMPL family Sec_GG PF07549.14 gi|126179600|ref|YP_001047565.1| - 0.11 12.0 0.1 0.27 10.8 0.1 1.7 1 0 0 1 1 1 0 SecD/SecF GG Motif Thioredoxin PF00085.20 gi|126179602|ref|YP_001047567.1| - 2.8e-19 69.0 0.0 3.4e-19 68.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|126179602|ref|YP_001047567.1| - 1.6e-08 34.7 0.0 9.8e-08 32.2 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|126179602|ref|YP_001047567.1| - 2.1e-07 31.4 0.2 3.4e-07 30.7 0.2 1.4 1 1 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.6 gi|126179602|ref|YP_001047567.1| - 7.8e-06 25.9 0.0 8.6e-06 25.7 0.0 1.0 1 0 0 1 1 1 1 F plasmid transfer operon protein Redoxin PF08534.10 gi|126179602|ref|YP_001047567.1| - 2.7e-05 23.9 0.1 6.5e-05 22.7 0.1 1.6 1 1 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 gi|126179602|ref|YP_001047567.1| - 0.00015 21.6 0.0 0.00018 21.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Glutaredoxin PF00462.24 gi|126179602|ref|YP_001047567.1| - 0.0013 18.9 0.1 0.0017 18.5 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin DUF953 PF06110.11 gi|126179602|ref|YP_001047567.1| - 0.0035 17.0 0.0 0.0046 16.6 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF953) DSBA PF01323.20 gi|126179602|ref|YP_001047567.1| - 0.0074 16.1 0.1 0.058 13.2 0.0 1.9 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_7 PF13899.6 gi|126179602|ref|YP_001047567.1| - 0.01 16.0 0.2 0.021 15.0 0.2 1.6 1 1 0 1 1 1 0 Thioredoxin-like HyaE PF07449.11 gi|126179602|ref|YP_001047567.1| - 0.014 15.3 0.0 0.017 15.1 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Thioredoxin_3 PF13192.6 gi|126179602|ref|YP_001047567.1| - 0.028 14.5 0.2 0.04 14.0 0.2 1.3 1 1 0 1 1 1 0 Thioredoxin domain DUF836 PF05768.14 gi|126179602|ref|YP_001047567.1| - 0.033 14.6 0.0 0.04 14.3 0.0 1.1 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_9 PF14595.6 gi|126179602|ref|YP_001047567.1| - 0.12 12.1 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin F420_oxidored PF03807.17 gi|126179603|ref|YP_001047568.1| - 9.8e-17 61.3 0.0 1.6e-16 60.6 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.17 gi|126179603|ref|YP_001047568.1| - 0.0047 16.0 0.2 0.013 14.5 0.1 1.7 2 0 0 2 2 2 1 Prephenate dehydrogenase Semialdhyde_dh PF01118.24 gi|126179603|ref|YP_001047568.1| - 0.036 14.5 0.1 0.093 13.2 0.1 1.7 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|126179603|ref|YP_001047568.1| - 0.037 14.0 0.0 0.067 13.2 0.0 1.6 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Aldolase_II PF00596.21 gi|126179605|ref|YP_001047570.1| - 2.7e-31 108.9 0.0 3.4e-31 108.6 0.0 1.1 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Glycos_transf_2 PF00535.26 gi|126179606|ref|YP_001047571.1| - 1e-20 74.2 0.0 1.7e-20 73.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|126179606|ref|YP_001047571.1| - 4.4e-09 36.6 0.0 7.5e-09 35.8 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|126179606|ref|YP_001047571.1| - 0.00072 20.0 0.0 0.0014 19.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 HTH_39 PF14090.6 gi|126179606|ref|YP_001047571.1| - 0.1 12.3 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF751 PF05421.11 gi|126179606|ref|YP_001047571.1| - 0.34 11.7 5.6 0.71 10.6 3.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF751) DUF99 PF01949.16 gi|126179607|ref|YP_001047572.1| - 2e-64 216.4 0.2 2.3e-64 216.2 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Usp PF00582.26 gi|126179608|ref|YP_001047573.1| - 8e-34 117.2 2.6 9.1e-34 117.0 2.6 1.0 1 0 0 1 1 1 1 Universal stress protein family CT_C_D PF02682.16 gi|126179608|ref|YP_001047573.1| - 0.0032 17.2 0.1 0.0039 17.0 0.1 1.1 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain C and D IF3_N PF05198.16 gi|126179608|ref|YP_001047573.1| - 0.043 14.1 0.0 1.2 9.4 0.0 2.2 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain DNA_photolyase PF00875.18 gi|126179608|ref|YP_001047573.1| - 0.065 13.2 0.6 0.14 12.1 0.6 1.5 1 1 0 1 1 1 0 DNA photolyase DUF3280 PF11684.8 gi|126179608|ref|YP_001047573.1| - 0.085 13.3 0.5 0.68 10.4 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2380) Pilin_N PF07790.11 gi|126179609|ref|YP_001047574.1| - 5.7e-07 30.4 0.0 9.8e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Transglut_core PF01841.19 gi|126179610|ref|YP_001047575.1| - 0.0006 20.2 0.0 0.0012 19.2 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily Radical_SAM PF04055.21 gi|126179611|ref|YP_001047576.1| - 3.4e-07 30.8 0.0 5e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|126179611|ref|YP_001047576.1| - 0.0012 19.2 1.3 0.002 18.4 1.3 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|126179611|ref|YP_001047576.1| - 0.05 13.7 1.9 0.099 12.8 1.9 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain PP2C_2 PF13672.6 gi|126179612|ref|YP_001047577.1| - 6.4e-13 48.8 0.2 1.2e-12 47.9 0.2 1.4 1 1 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.21 gi|126179612|ref|YP_001047577.1| - 3.4e-08 33.4 0.0 7.5e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 Protein phosphatase 2C SpoIIE PF07228.12 gi|126179612|ref|YP_001047577.1| - 0.0087 16.0 1.6 0.059 13.3 1.6 2.0 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) HEAT_2 PF13646.6 gi|126179613|ref|YP_001047578.1| - 8.8e-29 99.7 11.1 7.8e-16 58.2 2.7 2.3 1 1 1 2 2 2 2 HEAT repeats HEAT PF02985.22 gi|126179613|ref|YP_001047578.1| - 3.7e-20 70.3 1.2 5.7e-06 26.1 0.1 5.2 4 1 1 5 5 5 4 HEAT repeat HEAT_PBS PF03130.16 gi|126179613|ref|YP_001047578.1| - 7e-20 69.6 20.6 1.4e-05 25.3 0.5 5.2 5 0 0 5 5 5 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|126179613|ref|YP_001047578.1| - 2.8e-10 40.5 6.9 0.057 14.0 0.0 5.1 4 1 1 5 5 5 4 HEAT-like repeat Vac14_Fab1_bd PF12755.7 gi|126179613|ref|YP_001047578.1| - 0.0012 19.4 0.0 0.45 11.2 0.0 2.7 1 1 1 2 2 2 1 Vacuolar 14 Fab1-binding region Arm PF00514.23 gi|126179613|ref|YP_001047578.1| - 0.007 16.4 2.5 0.39 10.8 0.1 3.4 4 0 0 4 4 4 1 Armadillo/beta-catenin-like repeat IFRD PF05004.13 gi|126179613|ref|YP_001047578.1| - 0.016 14.3 0.1 0.081 12.0 0.0 2.0 1 1 0 1 1 1 0 Interferon-related developmental regulator (IFRD) DUF2019 PF09450.10 gi|126179613|ref|YP_001047578.1| - 0.029 14.3 0.7 2.4 8.1 0.1 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF2019) DUF2371 PF10177.9 gi|126179614|ref|YP_001047579.1| - 0.0076 16.4 0.1 0.0087 16.2 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2371) DUF459 PF04311.13 gi|126179614|ref|YP_001047579.1| - 0.21 10.5 0.0 0.24 10.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF459) HMGL-like PF00682.19 gi|126179615|ref|YP_001047580.1| - 1.6e-57 195.1 2.6 1.6e-57 195.1 2.6 2.2 3 0 0 3 3 3 1 HMGL-like LeuA_dimer PF08502.10 gi|126179615|ref|YP_001047580.1| - 1.3e-32 112.5 0.4 2.6e-32 111.5 0.4 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Prefoldin_2 PF01920.20 gi|126179616|ref|YP_001047581.1| - 6.9e-22 77.4 10.2 7.8e-22 77.2 10.2 1.0 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin PF02996.17 gi|126179616|ref|YP_001047581.1| - 0.00064 19.6 6.2 0.0096 15.8 6.2 2.1 1 1 0 1 1 1 1 Prefoldin subunit V-SNARE PF05008.15 gi|126179616|ref|YP_001047581.1| - 0.0019 18.5 7.8 0.032 14.6 0.9 2.2 2 0 0 2 2 2 1 Vesicle transport v-SNARE protein N-terminus APG6_N PF17675.1 gi|126179616|ref|YP_001047581.1| - 0.0021 18.6 6.0 0.0026 18.3 6.0 1.1 1 0 0 1 1 1 1 Apg6 coiled-coil region GCN5L1 PF06320.13 gi|126179616|ref|YP_001047581.1| - 0.0023 18.0 3.7 0.03 14.5 0.4 2.1 2 0 0 2 2 2 1 GCN5-like protein 1 (GCN5L1) DUF3958 PF13125.6 gi|126179616|ref|YP_001047581.1| - 0.0032 17.7 5.7 0.0039 17.4 5.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3958) DivIC PF04977.15 gi|126179616|ref|YP_001047581.1| - 0.0093 15.7 6.7 0.035 13.9 0.6 2.2 2 0 0 2 2 2 1 Septum formation initiator bZIP_1 PF00170.21 gi|126179616|ref|YP_001047581.1| - 0.0099 16.0 0.5 0.0099 16.0 0.5 1.8 2 0 0 2 2 2 1 bZIP transcription factor Filament PF00038.21 gi|126179616|ref|YP_001047581.1| - 0.018 14.6 8.9 0.15 11.6 2.0 2.0 1 1 1 2 2 2 0 Intermediate filament protein DUF4988 PF16378.5 gi|126179616|ref|YP_001047581.1| - 0.022 14.4 0.4 0.21 11.3 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function DASH_Dam1 PF08653.10 gi|126179616|ref|YP_001047581.1| - 0.025 14.4 1.2 0.18 11.6 0.1 2.2 2 0 0 2 2 2 0 DASH complex subunit Dam1 DUF4795 PF16043.5 gi|126179616|ref|YP_001047581.1| - 0.028 14.0 1.1 0.028 14.0 1.1 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4795) Prefoldin_3 PF13758.6 gi|126179616|ref|YP_001047581.1| - 0.043 13.9 2.9 0.076 13.1 2.9 1.5 1 1 0 1 1 1 0 Prefoldin subunit BRI3BP PF14965.6 gi|126179616|ref|YP_001047581.1| - 0.047 13.2 0.2 0.07 12.7 0.2 1.3 1 0 0 1 1 1 0 Negative regulator of p53/TP53 DUF2408 PF10303.9 gi|126179616|ref|YP_001047581.1| - 0.062 13.9 3.2 0.083 13.5 3.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) Leu_zip PF15294.6 gi|126179616|ref|YP_001047581.1| - 0.068 12.7 5.9 0.14 11.6 5.8 1.4 1 1 0 1 1 1 0 Leucine zipper HemX PF04375.14 gi|126179616|ref|YP_001047581.1| - 0.071 12.4 7.6 0.11 11.8 7.6 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase Tektin PF03148.14 gi|126179616|ref|YP_001047581.1| - 0.077 11.7 8.5 0.06 12.1 2.2 2.0 1 1 1 2 2 2 0 Tektin family SlyX PF04102.12 gi|126179616|ref|YP_001047581.1| - 0.078 13.6 11.9 0.23 12.1 2.0 2.2 2 0 0 2 2 2 0 SlyX Laminin_II PF06009.12 gi|126179616|ref|YP_001047581.1| - 0.11 12.6 7.3 1.5 8.9 0.5 2.0 1 1 0 2 2 2 0 Laminin Domain II Vps5 PF09325.10 gi|126179616|ref|YP_001047581.1| - 0.11 12.0 4.3 0.66 9.5 0.7 2.0 1 1 0 2 2 2 0 Vps5 C terminal like GAS PF13851.6 gi|126179616|ref|YP_001047581.1| - 0.11 11.8 10.4 1.3 8.4 10.4 1.9 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding HSBP1 PF06825.12 gi|126179616|ref|YP_001047581.1| - 0.14 12.0 11.4 5.4 7.0 0.0 3.3 2 1 1 3 3 3 0 Heat shock factor binding protein 1 Perilipin PF03036.16 gi|126179616|ref|YP_001047581.1| - 0.15 11.1 7.4 0.16 10.9 4.9 2.2 1 1 0 1 1 1 0 Perilipin family V_ATPase_I PF01496.19 gi|126179616|ref|YP_001047581.1| - 0.17 9.8 2.2 0.22 9.4 2.2 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family YscO PF07321.12 gi|126179616|ref|YP_001047581.1| - 0.21 11.5 9.1 1.4 8.8 1.8 2.2 2 0 0 2 2 2 0 Type III secretion protein YscO CLZ PF16526.5 gi|126179616|ref|YP_001047581.1| - 0.22 11.9 6.2 0.3 11.5 0.8 2.4 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels BMFP PF04380.13 gi|126179616|ref|YP_001047581.1| - 0.25 11.8 7.1 0.46 11.0 1.0 3.0 3 1 0 3 3 3 0 Membrane fusogenic activity DUF1690 PF07956.11 gi|126179616|ref|YP_001047581.1| - 0.29 11.5 4.6 0.51 10.8 4.6 1.3 1 1 0 1 1 1 0 Protein of Unknown function (DUF1690) TPR_MLP1_2 PF07926.12 gi|126179616|ref|YP_001047581.1| - 0.32 11.1 10.6 8 6.5 10.6 2.2 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DHR10 PF18595.1 gi|126179616|ref|YP_001047581.1| - 0.4 10.8 10.7 1.3 9.1 4.2 2.1 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain PspB PF06667.12 gi|126179616|ref|YP_001047581.1| - 0.42 10.7 2.8 0.36 10.9 0.4 2.0 2 0 0 2 2 2 0 Phage shock protein B DUF1664 PF07889.12 gi|126179616|ref|YP_001047581.1| - 0.6 10.1 6.3 6.8 6.7 0.6 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|126179616|ref|YP_001047581.1| - 0.66 8.8 10.3 2.1 7.1 10.3 1.7 1 1 0 1 1 1 0 Spc7 kinetochore protein DUF812 PF05667.11 gi|126179616|ref|YP_001047581.1| - 0.66 8.8 11.0 0.13 11.1 3.1 1.9 1 1 0 2 2 2 0 Protein of unknown function (DUF812) Fib_alpha PF08702.10 gi|126179616|ref|YP_001047581.1| - 0.72 10.0 6.1 1.3 9.2 6.1 1.5 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF3552 PF12072.8 gi|126179616|ref|YP_001047581.1| - 0.89 8.9 10.8 1.4 8.3 3.7 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) FlaC_arch PF05377.11 gi|126179616|ref|YP_001047581.1| - 0.97 9.9 5.4 3.3 8.2 0.4 2.7 2 2 1 3 3 3 0 Flagella accessory protein C (FlaC) DUF4140 PF13600.6 gi|126179616|ref|YP_001047581.1| - 1.2 9.6 5.4 0.78 10.2 2.0 2.1 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF3450 PF11932.8 gi|126179616|ref|YP_001047581.1| - 1.2 8.4 12.0 1.6 8.0 3.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DUF2802 PF10975.8 gi|126179616|ref|YP_001047581.1| - 1.4 9.1 9.8 7.9 6.7 1.2 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2802) Snapin_Pallidin PF14712.6 gi|126179616|ref|YP_001047581.1| - 1.5 9.3 13.2 1.3 9.5 1.7 2.2 1 1 1 2 2 2 0 Snapin/Pallidin BLOC1_2 PF10046.9 gi|126179616|ref|YP_001047581.1| - 2.2 8.6 8.1 7.7 6.9 6.9 2.0 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 YlqD PF11068.8 gi|126179616|ref|YP_001047581.1| - 2.4 8.5 14.3 0.14 12.5 2.9 2.1 1 1 1 2 2 2 0 YlqD protein Spc24 PF08286.11 gi|126179616|ref|YP_001047581.1| - 2.5 8.4 8.7 1.1 9.5 1.5 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Nup54 PF13874.6 gi|126179616|ref|YP_001047581.1| - 2.5 8.2 11.3 19 5.3 11.3 2.0 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Csm1_N PF18504.1 gi|126179616|ref|YP_001047581.1| - 2.6 8.4 8.9 1.8 9.0 3.0 2.4 2 1 0 2 2 2 0 Csm1 N-terminal domain Prominin PF05478.11 gi|126179616|ref|YP_001047581.1| - 3.2 5.6 6.1 7.4 4.4 6.0 1.5 1 1 0 1 1 1 0 Prominin YabA PF06156.13 gi|126179616|ref|YP_001047581.1| - 4.8 7.9 7.6 13 6.5 1.4 2.1 1 1 1 2 2 2 0 Initiation control protein YabA ABC_tran_CTD PF16326.5 gi|126179616|ref|YP_001047581.1| - 5.7 7.3 9.4 4 7.8 2.9 2.7 1 1 0 2 2 2 0 ABC transporter C-terminal domain Pcc1 PF09341.10 gi|126179617|ref|YP_001047582.1| - 1.2e-07 31.8 0.3 1.4e-07 31.6 0.3 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Ery_res_leader2 PF08057.11 gi|126179617|ref|YP_001047582.1| - 0.43 11.2 1.8 1.1 10.0 0.5 2.3 2 0 0 2 2 2 0 Erythromycin resistance leader peptide DNA_RNApol_7kD PF03604.13 gi|126179619|ref|YP_001047584.1| - 9.2e-13 47.6 7.1 1.1e-12 47.3 7.1 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|126179619|ref|YP_001047584.1| - 0.00028 20.2 2.9 0.001 18.4 3.0 1.8 1 1 0 1 1 1 1 zinc-ribbon domain zf_UBZ PF18439.1 gi|126179619|ref|YP_001047584.1| - 0.00032 20.2 2.2 0.099 12.2 0.4 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|126179619|ref|YP_001047584.1| - 0.00034 20.2 1.1 0.0005 19.7 1.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|126179619|ref|YP_001047584.1| - 0.00084 19.3 0.4 0.00084 19.3 0.4 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbon_6 PF10005.9 gi|126179619|ref|YP_001047584.1| - 0.0016 19.1 0.1 0.0016 19.1 0.1 1.0 1 0 0 1 1 1 1 zinc-ribbon domain Cys_rich_CPXG PF14255.6 gi|126179619|ref|YP_001047584.1| - 0.002 18.0 3.2 0.11 12.4 0.8 2.1 1 1 1 2 2 2 2 Cysteine-rich CPXCG DZR PF12773.7 gi|126179619|ref|YP_001047584.1| - 0.0031 17.5 0.6 0.0037 17.2 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|126179619|ref|YP_001047584.1| - 0.0042 17.0 0.3 0.0044 17.0 0.3 1.1 1 0 0 1 1 1 1 zinc-ribbons UPF0547 PF10571.9 gi|126179619|ref|YP_001047584.1| - 0.0078 16.3 4.2 0.014 15.4 4.2 1.4 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.10 gi|126179619|ref|YP_001047584.1| - 0.015 15.4 2.7 0.026 14.7 2.7 1.4 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|126179619|ref|YP_001047584.1| - 0.028 14.4 3.7 0.6 10.1 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-AN1 PF01428.16 gi|126179619|ref|YP_001047584.1| - 0.032 14.4 1.6 0.044 14.0 1.6 1.3 1 0 0 1 1 1 0 AN1-like Zinc finger zinc_ribbon_4 PF13717.6 gi|126179619|ref|YP_001047584.1| - 0.036 14.0 4.2 2 8.4 4.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|126179619|ref|YP_001047584.1| - 0.037 13.9 1.9 4.3 7.3 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) YacG PF03884.14 gi|126179619|ref|YP_001047584.1| - 0.057 13.2 1.4 0.34 10.7 1.9 1.7 1 1 1 2 2 2 0 DNA gyrase inhibitor YacG DUF951 PF06107.11 gi|126179619|ref|YP_001047584.1| - 0.076 12.9 2.1 0.13 12.2 0.1 1.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) Zn_ribbon_SprT PF17283.2 gi|126179619|ref|YP_001047584.1| - 0.17 11.8 8.7 0.87 9.5 1.2 2.1 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Mu-like_Com PF10122.9 gi|126179619|ref|YP_001047584.1| - 0.17 11.4 3.8 0.35 10.3 3.7 1.7 1 1 0 1 1 1 0 Mu-like prophage protein Com CpXC PF14353.6 gi|126179619|ref|YP_001047584.1| - 0.17 11.9 1.9 2.5 8.1 0.1 2.0 1 1 1 2 2 2 0 CpXC protein Desulfoferrod_N PF06397.12 gi|126179619|ref|YP_001047584.1| - 0.18 11.5 3.2 2.3 7.9 0.4 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-LITAF-like PF10601.9 gi|126179619|ref|YP_001047584.1| - 0.24 11.7 3.6 1.9 8.8 0.1 2.0 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-Di19 PF05605.12 gi|126179619|ref|YP_001047584.1| - 0.43 10.9 3.5 0.62 10.4 0.4 2.0 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DiS_P_DiS PF06750.13 gi|126179619|ref|YP_001047584.1| - 0.45 10.7 2.7 11 6.2 0.1 2.0 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain Ribosomal_L37ae PF01780.19 gi|126179620|ref|YP_001047585.1| - 8.4e-33 112.3 1.9 9.9e-33 112.1 1.9 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Rep_fac-A_C PF08646.10 gi|126179620|ref|YP_001047585.1| - 0.00012 21.9 0.4 0.00014 21.6 0.4 1.1 1 0 0 1 1 1 1 Replication factor-A C terminal domain OrfB_Zn_ribbon PF07282.11 gi|126179620|ref|YP_001047585.1| - 0.00023 21.0 0.9 0.00036 20.4 0.9 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain IBR PF01485.21 gi|126179620|ref|YP_001047585.1| - 0.00024 21.2 0.3 0.00033 20.8 0.3 1.2 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain Zn_Tnp_IS1595 PF12760.7 gi|126179620|ref|YP_001047585.1| - 0.017 15.1 3.6 0.026 14.5 3.6 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain RPA_interact_C PF14768.6 gi|126179620|ref|YP_001047585.1| - 0.017 15.7 0.1 0.02 15.4 0.1 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal Elf1 PF05129.13 gi|126179620|ref|YP_001047585.1| - 0.03 14.4 0.3 0.049 13.7 0.3 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.10 gi|126179620|ref|YP_001047585.1| - 0.051 13.7 2.0 0.85 9.8 0.4 2.2 2 0 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.9 gi|126179620|ref|YP_001047585.1| - 0.1 12.7 3.3 5.5 7.2 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf_UBZ PF18439.1 gi|126179620|ref|YP_001047585.1| - 0.11 12.1 0.9 7.4 6.3 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf_C2H2_10 PF18414.1 gi|126179620|ref|YP_001047585.1| - 0.27 10.8 2.9 0.65 9.6 0.3 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger YyzF PF14116.6 gi|126179620|ref|YP_001047585.1| - 0.4 10.8 0.3 0.4 10.8 0.3 1.6 2 0 0 2 2 2 0 YyzF-like protein SBDS_C PF09377.10 gi|126179621|ref|YP_001047586.1| - 3.3e-23 81.9 0.0 5.5e-23 81.2 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain SBDS PF01172.18 gi|126179621|ref|YP_001047586.1| - 6.1e-23 80.7 0.0 1e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein Proteasome PF00227.26 gi|126179622|ref|YP_001047587.1| - 4.5e-58 195.9 0.1 6e-58 195.5 0.1 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|126179622|ref|YP_001047587.1| - 3.1e-14 52.3 0.2 5.6e-14 51.5 0.2 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.19 gi|126179623|ref|YP_001047588.1| - 1e-13 51.4 0.2 3.4e-13 49.7 0.3 1.7 2 0 0 2 2 2 1 Rpp14/Pop5 family RNase_P_p30 PF01876.16 gi|126179624|ref|YP_001047589.1| - 1.2e-21 77.2 0.2 5e-21 75.2 0.2 1.8 1 1 0 1 1 1 1 RNase P subunit p30 DUF2129 PF09902.9 gi|126179624|ref|YP_001047589.1| - 0.085 12.9 0.1 0.86 9.7 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2129) Ribosomal_L15e PF00827.17 gi|126179625|ref|YP_001047590.1| - 1.6e-82 275.9 9.3 1.8e-82 275.7 9.3 1.0 1 0 0 1 1 1 1 Ribosomal L15 MoaC PF01967.21 gi|126179626|ref|YP_001047591.1| - 1.5e-48 164.3 0.2 1.7e-48 164.1 0.2 1.0 1 0 0 1 1 1 1 MoaC family DUF5066 PF16728.5 gi|126179626|ref|YP_001047591.1| - 0.16 11.3 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5066) Carb_kinase PF01256.17 gi|126179627|ref|YP_001047592.1| - 3.1e-41 141.5 0.8 4.3e-41 141.0 0.8 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|126179627|ref|YP_001047592.1| - 4.8e-31 107.9 0.1 1.1e-30 106.8 0.1 1.6 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.15 gi|126179627|ref|YP_001047592.1| - 0.041 13.3 0.5 0.081 12.3 0.5 1.4 1 0 0 1 1 1 0 Hydroxyethylthiazole kinase family DpaA_N PF16924.5 gi|126179627|ref|YP_001047592.1| - 0.083 13.0 0.0 2.2 8.4 0.0 2.4 2 0 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain DHHA1 PF02272.19 gi|126179628|ref|YP_001047593.1| - 1.8e-14 54.4 0.0 3.5e-14 53.4 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|126179628|ref|YP_001047593.1| - 0.014 15.7 0.1 0.028 14.7 0.1 1.5 1 0 0 1 1 1 0 DHH family TGT_C2 PF14810.6 gi|126179629|ref|YP_001047594.1| - 1.6e-28 98.6 0.4 3e-28 97.7 0.2 1.6 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|126179629|ref|YP_001047594.1| - 4e-14 52.3 1.4 6.5e-14 51.6 1.4 1.3 1 0 0 1 1 1 1 PUA domain MazE_antitoxin PF04014.18 gi|126179629|ref|YP_001047594.1| - 0.11 12.4 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin NAC PF01849.18 gi|126179630|ref|YP_001047595.1| - 1.9e-17 63.0 1.6 3.8e-17 62.0 1.6 1.5 2 0 0 2 2 2 1 NAC domain ILEI PF15711.5 gi|126179630|ref|YP_001047595.1| - 0.062 13.8 0.0 0.11 13.0 0.0 1.5 1 1 0 1 1 1 0 Interleukin-like EMT inducer PCMT PF01135.19 gi|126179631|ref|YP_001047596.1| - 3.8e-07 30.1 0.0 5.1e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|126179631|ref|YP_001047596.1| - 3.3e-06 27.0 0.0 4.7e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126179631|ref|YP_001047596.1| - 3.8e-06 27.5 0.0 6.4e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|126179631|ref|YP_001047596.1| - 4.1e-06 26.7 0.0 8.8e-06 25.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|126179631|ref|YP_001047596.1| - 6.7e-06 25.4 0.0 8.7e-06 25.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14 PF08704.10 gi|126179631|ref|YP_001047596.1| - 1.3e-05 25.0 0.0 3.9e-05 23.5 0.0 1.7 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_11 PF08241.12 gi|126179631|ref|YP_001047596.1| - 2.4e-05 24.9 0.0 4.6e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|126179631|ref|YP_001047596.1| - 5.7e-05 22.7 0.0 0.00012 21.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|126179631|ref|YP_001047596.1| - 0.00015 21.2 0.0 0.00021 20.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.6 gi|126179631|ref|YP_001047596.1| - 0.021 15.8 0.0 0.037 15.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|126179631|ref|YP_001047596.1| - 0.028 14.4 0.0 0.046 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF3054 PF11255.8 gi|126179631|ref|YP_001047596.1| - 0.14 12.6 0.0 3.3 8.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3054) Methyltransf_12 PF08242.12 gi|126179631|ref|YP_001047596.1| - 0.18 12.6 0.0 0.49 11.2 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain OTCace_N PF02729.21 gi|126179633|ref|YP_001047598.1| - 6.7e-47 159.2 0.0 1.3e-46 158.3 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|126179633|ref|YP_001047598.1| - 2e-26 92.9 0.0 2.7e-26 92.5 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|126179634|ref|YP_001047599.1| - 1.1e-34 118.5 1.7 1.4e-34 118.2 1.7 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|126179634|ref|YP_001047599.1| - 2.1e-12 46.7 0.0 5.1e-12 45.5 0.0 1.6 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain CTP_transf_like PF01467.26 gi|126179635|ref|YP_001047600.1| - 5.8e-13 49.2 0.0 6.7e-13 49.0 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|126179635|ref|YP_001047600.1| - 0.0031 17.4 0.4 0.006 16.5 0.1 1.7 2 0 0 2 2 2 1 FAD synthetase Hexapep PF00132.24 gi|126179636|ref|YP_001047601.1| - 2.9e-17 61.6 24.9 4.6e-08 32.5 4.6 4.2 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|126179636|ref|YP_001047601.1| - 5.8e-08 32.4 20.1 0.0012 18.6 1.5 4.3 4 1 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|126179636|ref|YP_001047601.1| - 0.084 11.8 0.1 0.26 10.2 0.0 1.6 1 1 1 2 2 2 0 L-fucokinase Pyr_redox_2 PF07992.14 gi|126179637|ref|YP_001047602.1| - 3.2e-24 85.7 0.3 5.2e-24 85.0 0.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|126179637|ref|YP_001047602.1| - 4.5e-10 38.9 15.8 3.7e-05 23.4 3.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain DAO PF01266.24 gi|126179637|ref|YP_001047602.1| - 1.3e-08 34.9 1.7 4e-05 23.4 0.7 2.9 3 0 0 3 3 3 2 FAD dependent oxidoreductase Fer4_9 PF13187.6 gi|126179637|ref|YP_001047602.1| - 1.7e-08 34.5 6.9 1.7e-08 34.5 6.9 2.3 3 0 0 3 3 2 1 4Fe-4S dicluster domain NAD_binding_8 PF13450.6 gi|126179637|ref|YP_001047602.1| - 1.7e-07 31.3 0.0 8.2e-07 29.2 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|126179637|ref|YP_001047602.1| - 7.8e-07 29.6 0.5 1.4e-05 25.5 0.3 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_16 PF13484.6 gi|126179637|ref|YP_001047602.1| - 2.1e-06 28.6 6.5 0.0035 18.2 0.1 2.9 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain FAD_oxidored PF12831.7 gi|126179637|ref|YP_001047602.1| - 3.4e-06 26.7 0.0 5.7e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_7 PF12838.7 gi|126179637|ref|YP_001047602.1| - 6e-06 26.8 18.5 8.8e-06 26.2 9.6 2.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain FAD_binding_2 PF00890.24 gi|126179637|ref|YP_001047602.1| - 7e-06 25.4 1.2 1.2e-05 24.6 0.4 1.7 3 0 0 3 3 3 1 FAD binding domain Fer4_10 PF13237.6 gi|126179637|ref|YP_001047602.1| - 1.8e-05 24.8 10.1 1.8e-05 24.8 10.1 2.6 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126179637|ref|YP_001047602.1| - 2.1e-05 24.7 12.9 0.0064 16.9 2.6 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain HI0933_like PF03486.14 gi|126179637|ref|YP_001047602.1| - 2.3e-05 23.3 0.5 0.0004 19.2 0.2 2.3 2 1 1 3 3 3 1 HI0933-like protein Fer4_6 PF12837.7 gi|126179637|ref|YP_001047602.1| - 4e-05 23.5 20.3 0.0014 18.6 3.3 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|126179637|ref|YP_001047602.1| - 4.7e-05 23.8 4.1 4.7e-05 23.8 4.1 2.5 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126179637|ref|YP_001047602.1| - 6.5e-05 23.0 8.7 0.00093 19.3 1.3 3.1 4 0 0 4 4 2 2 4Fe-4S dicluster domain GIDA PF01134.22 gi|126179637|ref|YP_001047602.1| - 8e-05 21.9 0.1 0.00017 20.8 0.1 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|126179637|ref|YP_001047602.1| - 8.3e-05 22.0 0.5 60 2.7 0.0 3.1 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_2 PF12797.7 gi|126179637|ref|YP_001047602.1| - 8.7e-05 22.4 17.4 0.013 15.5 2.8 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Thi4 PF01946.17 gi|126179637|ref|YP_001047602.1| - 0.00018 20.8 0.0 0.00064 19.0 0.0 1.9 1 0 0 1 1 1 1 Thi4 family Fer4_13 PF13370.6 gi|126179637|ref|YP_001047602.1| - 0.00035 21.1 6.2 0.31 11.6 0.6 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I FAD_binding_3 PF01494.19 gi|126179637|ref|YP_001047602.1| - 0.0012 18.1 0.1 0.0048 16.2 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain Fer4_8 PF13183.6 gi|126179637|ref|YP_001047602.1| - 0.0018 18.7 13.6 0.015 15.7 0.0 2.8 3 1 1 4 4 3 3 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|126179637|ref|YP_001047602.1| - 0.0024 18.7 3.6 0.24 12.3 0.4 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain NAD_binding_9 PF13454.6 gi|126179637|ref|YP_001047602.1| - 0.0039 17.2 0.1 0.015 15.2 0.1 2.0 3 0 0 3 3 2 1 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|126179637|ref|YP_001047602.1| - 0.01 15.7 0.7 0.018 15.0 0.1 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|126179637|ref|YP_001047602.1| - 0.012 14.9 0.0 0.019 14.3 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|126179637|ref|YP_001047602.1| - 0.024 13.7 0.4 0.044 12.8 0.4 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein Fer4_15 PF13459.6 gi|126179637|ref|YP_001047602.1| - 0.11 13.2 8.6 1.6 9.5 0.5 3.0 3 0 0 3 3 2 0 4Fe-4S single cluster domain IF-2B PF01008.17 gi|126179638|ref|YP_001047603.1| - 5.2e-80 268.7 0.0 6.1e-80 268.4 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF4431 PF14485.6 gi|126179638|ref|YP_001047603.1| - 0.36 10.7 1.8 2.7 7.8 1.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4431) DUF116 PF01976.17 gi|126179639|ref|YP_001047604.1| - 9e-50 168.2 0.1 1.1e-49 167.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 HTH_25 PF13413.6 gi|126179639|ref|YP_001047604.1| - 0.0025 17.6 0.0 0.018 14.9 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Bactofilin PF04519.13 gi|126179640|ref|YP_001047605.1| - 1.6e-05 25.1 0.8 0.00047 20.4 0.3 2.2 1 1 1 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|126179640|ref|YP_001047605.1| - 0.042 13.6 5.9 13 5.7 0.1 3.9 2 1 1 4 4 4 0 Bacterial transferase hexapeptide (six repeats) Pea-VEAacid PF08111.11 gi|126179640|ref|YP_001047605.1| - 0.2 12.0 0.7 0.89 10.0 0.0 2.4 3 0 0 3 3 3 0 Pea-VEAacid family UbiA PF01040.18 gi|126179641|ref|YP_001047606.1| - 1.6e-38 132.4 23.7 2.6e-38 131.7 23.7 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family TMEM132D_C PF15706.5 gi|126179641|ref|YP_001047606.1| - 0.13 12.0 4.4 0.44 10.3 0.1 2.5 2 0 0 2 2 2 0 Mature oligodendrocyte transmembrane protein, TMEM132D, C-term TRM PF02005.16 gi|126179642|ref|YP_001047607.1| - 1e-90 304.7 0.0 1.2e-90 304.4 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 gi|126179642|ref|YP_001047607.1| - 0.00096 18.7 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|126179642|ref|YP_001047607.1| - 0.018 15.7 0.0 0.054 14.2 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain MarR_2 PF12802.7 gi|126179642|ref|YP_001047607.1| - 0.081 12.8 0.0 0.24 11.3 0.0 1.7 1 0 0 1 1 1 0 MarR family MMR_HSR1_Xtn PF16897.5 gi|126179643|ref|YP_001047608.1| - 3.1e-28 97.9 0.0 7e-28 96.7 0.0 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain TGS PF02824.21 gi|126179643|ref|YP_001047608.1| - 1.4e-21 76.3 0.0 2.7e-21 75.3 0.0 1.5 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.23 gi|126179643|ref|YP_001047608.1| - 5.5e-21 74.8 0.1 1e-20 73.9 0.1 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|126179643|ref|YP_001047608.1| - 1.7e-14 53.6 0.0 3.2e-10 39.8 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|126179643|ref|YP_001047608.1| - 1.7e-08 34.5 0.1 0.0035 17.2 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase Dynamin_N PF00350.23 gi|126179643|ref|YP_001047608.1| - 3.5e-05 23.9 0.1 0.0064 16.6 0.1 2.4 2 0 0 2 2 2 1 Dynamin family SRPRB PF09439.10 gi|126179643|ref|YP_001047608.1| - 0.00011 21.6 0.0 0.00074 19.0 0.0 2.0 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit AIG1 PF04548.16 gi|126179643|ref|YP_001047608.1| - 0.00017 21.0 0.5 0.00028 20.3 0.1 1.5 2 0 0 2 2 2 1 AIG1 family Arf PF00025.21 gi|126179643|ref|YP_001047608.1| - 0.00032 20.2 0.1 0.019 14.5 0.0 2.7 2 2 0 2 2 2 1 ADP-ribosylation factor family GTP_EFTU PF00009.27 gi|126179643|ref|YP_001047608.1| - 0.0019 17.8 0.6 0.57 9.7 0.0 3.4 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain MeaB PF03308.16 gi|126179643|ref|YP_001047608.1| - 0.0071 15.4 0.1 0.028 13.4 0.2 2.0 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Roc PF08477.13 gi|126179643|ref|YP_001047608.1| - 0.0077 16.4 0.0 0.015 15.5 0.0 1.6 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase cobW PF02492.19 gi|126179643|ref|YP_001047608.1| - 0.012 15.2 2.3 0.34 10.5 2.3 2.6 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|126179643|ref|YP_001047608.1| - 0.027 14.7 0.1 0.073 13.3 0.1 1.8 1 0 0 1 1 1 0 AAA domain Ras PF00071.22 gi|126179643|ref|YP_001047608.1| - 0.03 13.9 0.0 0.34 10.5 0.0 2.2 2 0 0 2 2 2 0 Ras family AAA_16 PF13191.6 gi|126179643|ref|YP_001047608.1| - 0.084 13.2 0.1 0.17 12.3 0.1 1.5 1 0 0 1 1 1 0 AAA ATPase domain MCM PF00493.23 gi|126179643|ref|YP_001047608.1| - 0.1 11.7 0.2 0.22 10.6 0.0 1.6 2 0 0 2 2 2 0 MCM P-loop domain MFS_1 PF07690.16 gi|126179644|ref|YP_001047609.1| - 8.3e-43 146.7 46.3 8.3e-43 146.7 46.3 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|126179644|ref|YP_001047609.1| - 1.4e-11 44.0 10.2 1.4e-11 44.0 10.2 2.4 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.6 gi|126179644|ref|YP_001047609.1| - 2.5e-11 42.8 30.8 2.1e-06 26.6 12.8 3.0 1 1 1 3 3 3 2 MFS/sugar transport protein SVM_signal PF12113.8 gi|126179644|ref|YP_001047609.1| - 3.1 7.8 8.3 8.9 6.3 8.3 1.8 1 0 0 1 1 1 0 SVM protein signal sequence PIN PF01850.21 gi|126179646|ref|YP_001047611.1| - 1.2e-09 38.7 0.1 1.4e-09 38.5 0.1 1.0 1 0 0 1 1 1 1 PIN domain ATP-grasp_5 PF13549.6 gi|126179647|ref|YP_001047612.1| - 1.4e-67 227.4 0.3 1.9e-67 227.0 0.3 1.2 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|126179647|ref|YP_001047612.1| - 6.9e-52 174.9 0.1 1.3e-51 174.0 0.1 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|126179647|ref|YP_001047612.1| - 5.6e-27 94.6 0.1 3.1e-26 92.2 0.0 2.4 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|126179647|ref|YP_001047612.1| - 4.1e-14 53.0 1.8 8.9e-14 52.0 0.1 2.6 3 0 0 3 3 3 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|126179647|ref|YP_001047612.1| - 1.5e-05 24.7 0.2 2.7e-05 23.8 0.2 1.4 1 0 0 1 1 1 1 ATP-grasp domain YIEGIA PF14045.6 gi|126179647|ref|YP_001047612.1| - 0.0056 15.6 0.0 0.0099 14.8 0.0 1.3 1 0 0 1 1 1 1 YIEGIA protein ATP-grasp PF02222.22 gi|126179647|ref|YP_001047612.1| - 0.021 14.4 0.1 0.056 13.0 0.1 1.7 1 0 0 1 1 1 0 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|126179647|ref|YP_001047612.1| - 0.12 11.9 0.1 0.31 10.5 0.1 1.7 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain NAD_Gly3P_dh_N PF01210.23 gi|126179647|ref|YP_001047612.1| - 0.13 12.2 0.4 0.94 9.4 0.0 2.2 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Glyco_tranf_2_3 PF13641.6 gi|126179648|ref|YP_001047613.1| - 1.5e-31 110.1 0.0 2.5e-31 109.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|126179648|ref|YP_001047613.1| - 4.7e-24 85.1 0.0 6.6e-24 84.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|126179648|ref|YP_001047613.1| - 1.3e-22 80.7 0.4 1.3e-22 80.7 0.4 2.4 3 0 0 3 3 3 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|126179648|ref|YP_001047613.1| - 1.5e-13 50.6 0.0 2.9e-13 49.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 Cellulose_synt PF03552.14 gi|126179648|ref|YP_001047613.1| - 7.5e-07 28.0 6.5 2.6e-05 23.0 0.6 2.4 2 1 1 3 3 3 2 Cellulose synthase NTP_transf_3 PF12804.7 gi|126179648|ref|YP_001047613.1| - 0.01 16.2 0.0 0.02 15.3 0.0 1.7 1 1 0 1 1 1 1 MobA-like NTP transferase domain Sod_Fe_C PF02777.18 gi|126179649|ref|YP_001047614.1| - 4.9e-33 113.4 0.2 7.7e-33 112.7 0.2 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|126179649|ref|YP_001047614.1| - 1.4e-32 112.0 0.5 2.9e-32 111.0 0.5 1.5 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain CCG PF02754.16 gi|126179650|ref|YP_001047615.1| - 1.2e-14 54.2 0.3 1.3e-06 28.5 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_17 PF13534.6 gi|126179650|ref|YP_001047615.1| - 1.2e-07 32.1 4.9 7.7e-07 29.6 5.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126179650|ref|YP_001047615.1| - 1.1e-06 28.7 7.2 2.4e-06 27.6 6.2 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126179650|ref|YP_001047615.1| - 1.6e-06 28.6 7.5 5e-06 27.0 7.5 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|126179650|ref|YP_001047615.1| - 8.4e-06 25.4 11.5 0.013 15.3 2.4 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|126179650|ref|YP_001047615.1| - 2.2e-05 24.8 9.5 0.00024 21.5 9.9 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|126179650|ref|YP_001047615.1| - 0.00085 19.5 1.3 0.052 13.7 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126179650|ref|YP_001047615.1| - 0.0075 16.3 14.5 0.017 15.2 3.2 3.1 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|126179650|ref|YP_001047615.1| - 0.01 16.2 9.9 0.028 14.9 2.2 3.6 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|126179650|ref|YP_001047615.1| - 0.016 16.2 7.8 1 10.3 0.8 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|126179650|ref|YP_001047615.1| - 0.019 15.1 7.7 0.48 10.6 0.6 3.5 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126179650|ref|YP_001047615.1| - 0.028 14.5 2.2 0.028 14.5 2.2 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126179650|ref|YP_001047615.1| - 0.049 13.8 18.3 0.043 13.9 12.7 2.8 3 1 1 4 4 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|126179650|ref|YP_001047615.1| - 0.43 10.4 3.2 0.58 9.9 0.1 2.4 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_22 PF17179.4 gi|126179650|ref|YP_001047615.1| - 5 8.0 12.4 14 6.7 1.2 3.7 4 0 0 4 4 4 0 4Fe-4S dicluster domain HATPase_c PF02518.26 gi|126179651|ref|YP_001047616.1| - 4.4e-21 75.5 0.0 8.5e-21 74.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|126179651|ref|YP_001047616.1| - 2.2e-12 47.4 0.1 6.5e-12 45.9 0.1 1.8 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|126179651|ref|YP_001047616.1| - 4.6e-11 43.2 0.0 1.8e-10 41.2 0.0 2.0 1 1 0 1 1 1 1 GAF domain GAF PF01590.26 gi|126179651|ref|YP_001047616.1| - 4.1e-06 27.5 0.0 9.4e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 gi|126179651|ref|YP_001047616.1| - 7.2e-05 23.0 0.1 0.00015 22.0 0.1 1.6 1 0 0 1 1 1 1 PAS fold PrcB_C PF14343.6 gi|126179651|ref|YP_001047616.1| - 0.0022 18.1 0.1 0.014 15.5 0.1 2.1 2 0 0 2 2 2 1 PrcB C-terminal HATPase_c_2 PF13581.6 gi|126179651|ref|YP_001047616.1| - 0.012 15.6 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_9 PF13426.7 gi|126179651|ref|YP_001047616.1| - 0.019 15.2 0.0 0.037 14.3 0.0 1.5 1 0 0 1 1 1 0 PAS domain PAS_7 PF12860.7 gi|126179651|ref|YP_001047616.1| - 0.14 12.3 0.0 0.42 10.8 0.0 1.9 2 0 0 2 2 2 0 PAS fold MatE PF01554.18 gi|126179652|ref|YP_001047617.1| - 1.1e-50 171.4 50.0 8.6e-30 103.5 14.4 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|126179652|ref|YP_001047617.1| - 1.5e-11 44.5 9.4 1.5e-11 44.5 9.4 4.8 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain ATP-cone PF03477.16 gi|126179653|ref|YP_001047618.1| - 4.8e-05 23.8 0.0 5.7e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 ATP cone domain Ribonuclease_3 PF00636.26 gi|126179654|ref|YP_001047619.1| - 3.3e-09 37.3 0.0 8.7e-08 32.7 0.0 2.3 2 0 0 2 2 2 1 Ribonuclease III domain Ribonucleas_3_3 PF14622.6 gi|126179654|ref|YP_001047619.1| - 0.0018 18.5 0.0 0.0031 17.7 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease-III-like DAO PF01266.24 gi|126179655|ref|YP_001047620.1| - 6.6e-11 42.4 6.9 1e-06 28.6 0.5 2.7 2 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|126179655|ref|YP_001047620.1| - 3.8e-09 36.2 11.0 2.2e-06 27.1 0.2 3.9 4 0 0 4 4 4 2 FAD binding domain NAD_binding_8 PF13450.6 gi|126179655|ref|YP_001047620.1| - 2.6e-08 34.0 1.8 1.6e-07 31.4 0.1 2.8 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|126179655|ref|YP_001047620.1| - 3.6e-08 33.2 0.4 5.8e-08 32.5 0.4 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|126179655|ref|YP_001047620.1| - 8e-08 31.6 0.1 0.0094 14.8 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|126179655|ref|YP_001047620.1| - 1.3e-07 31.1 0.3 3.7e-07 29.7 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|126179655|ref|YP_001047620.1| - 1.5e-07 30.8 0.0 4.6e-07 29.3 0.0 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|126179655|ref|YP_001047620.1| - 1.3e-06 27.8 0.1 2.9e-06 26.7 0.1 1.5 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 gi|126179655|ref|YP_001047620.1| - 1.7e-06 27.0 0.1 2.7e-06 26.4 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|126179655|ref|YP_001047620.1| - 7.7e-06 25.2 4.4 0.0026 16.9 1.2 2.7 2 1 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|126179655|ref|YP_001047620.1| - 1.1e-05 24.7 1.3 2.3e-05 23.7 0.4 1.9 2 0 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|126179655|ref|YP_001047620.1| - 0.00055 19.3 0.3 0.0012 18.2 0.3 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|126179655|ref|YP_001047620.1| - 0.00069 19.0 0.1 0.012 14.9 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.6 gi|126179655|ref|YP_001047620.1| - 0.009 16.5 0.0 0.025 15.1 0.0 1.8 1 1 0 1 1 1 1 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|126179655|ref|YP_001047620.1| - 0.027 14.3 0.2 0.049 13.5 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|126179655|ref|YP_001047620.1| - 0.029 14.9 0.1 0.062 13.9 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DUF3006 PF11213.8 gi|126179656|ref|YP_001047621.1| - 2e-19 69.6 1.6 2.3e-19 69.4 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) CHS5_N PF16892.5 gi|126179656|ref|YP_001047621.1| - 0.0043 17.0 0.0 0.0057 16.6 0.0 1.2 1 0 0 1 1 1 1 Chitin biosynthesis protein CHS5 N-terminus LTD PF00932.19 gi|126179657|ref|YP_001047622.1| - 3.9e-21 75.5 1.8 3.9e-21 75.5 1.8 2.0 1 1 1 2 2 2 1 Lamin Tail Domain Lactamase_B PF00753.27 gi|126179657|ref|YP_001047622.1| - 4e-18 66.1 2.3 4.6e-18 65.9 1.4 1.6 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|126179657|ref|YP_001047622.1| - 5.7e-08 32.5 0.4 3.4e-07 30.0 0.0 2.1 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|126179657|ref|YP_001047622.1| - 0.0029 17.1 0.0 0.0045 16.5 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|126179657|ref|YP_001047622.1| - 0.0038 17.1 0.0 0.0088 15.9 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF1724 PF08350.10 gi|126179658|ref|YP_001047623.1| - 9.9e-19 67.2 0.0 1.9e-18 66.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) UbiA PF01040.18 gi|162138876|ref|YP_001047624.2| - 1.9e-20 73.2 15.6 1.9e-20 73.2 15.6 1.7 1 1 1 2 2 2 1 UbiA prenyltransferase family ZYG-11_interact PF05884.12 gi|162138876|ref|YP_001047624.2| - 0.47 9.8 8.9 0.03 13.8 2.9 2.0 2 0 0 2 2 2 0 Interactor of ZYG-11 PSI_integrin PF17205.3 gi|126179660|ref|YP_001047625.1| - 0.076 12.8 2.5 0.12 12.1 2.5 1.3 1 0 0 1 1 1 0 Integrin plexin domain AP_endonuc_2 PF01261.24 gi|126179661|ref|YP_001047626.1| - 0.013 14.9 0.2 0.023 14.1 0.2 1.5 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel NHL PF01436.21 gi|126179662|ref|YP_001047627.1| - 2.2e-28 96.8 0.0 2e-05 24.4 0.0 6.6 6 0 0 6 6 6 6 NHL repeat Thioredoxin_8 PF13905.6 gi|126179662|ref|YP_001047627.1| - 2.6e-07 30.9 0.0 5.2e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.21 gi|126179662|ref|YP_001047627.1| - 1.7e-05 24.7 0.0 2.7e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|126179662|ref|YP_001047627.1| - 2.7e-05 23.9 0.0 0.00014 21.6 0.0 2.0 2 0 0 2 2 2 1 Redoxin Thioredoxin_2 PF13098.6 gi|126179662|ref|YP_001047627.1| - 8.5e-05 23.0 0.0 0.00015 22.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.20 gi|126179662|ref|YP_001047627.1| - 0.00054 19.9 0.0 0.047 13.7 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin SGL PF08450.12 gi|126179662|ref|YP_001047627.1| - 0.00068 19.3 0.0 0.85 9.1 0.0 3.0 1 1 0 2 2 2 2 SMP-30/Gluconolactonase/LRE-like region Phytase-like PF13449.6 gi|126179662|ref|YP_001047627.1| - 0.0041 17.1 0.1 5.9 6.7 0.0 3.1 3 2 0 3 3 3 2 Esterase-like activity of phytase Arylesterase PF01731.20 gi|126179662|ref|YP_001047627.1| - 0.0061 16.7 0.0 16 5.7 0.0 3.6 4 0 0 4 4 4 0 Arylesterase TraF PF13728.6 gi|126179662|ref|YP_001047627.1| - 0.057 13.2 0.0 1.8 8.3 0.0 2.1 2 0 0 2 2 2 0 F plasmid transfer operon protein DUF4431 PF14485.6 gi|126179662|ref|YP_001047627.1| - 0.35 10.7 0.7 70 3.3 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4431) PQQ_3 PF13570.6 gi|126179662|ref|YP_001047627.1| - 0.87 10.2 13.8 5.8 7.5 0.0 6.5 6 1 1 7 7 7 0 PQQ-like domain Fasciclin PF02469.22 gi|126179663|ref|YP_001047628.1| - 4.8e-32 110.9 0.0 7e-32 110.3 0.0 1.2 1 0 0 1 1 1 1 Fasciclin domain AAA_11 PF13086.6 gi|126179664|ref|YP_001047629.1| - 7e-20 71.9 0.0 1.3e-08 35.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_12 PF13087.6 gi|126179664|ref|YP_001047629.1| - 7.5e-19 68.1 0.0 1.2e-18 67.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|126179664|ref|YP_001047629.1| - 2.2e-16 60.1 0.1 5.4e-16 58.9 0.1 1.7 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|126179664|ref|YP_001047629.1| - 1.8e-12 47.8 0.0 3.4e-12 46.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|126179664|ref|YP_001047629.1| - 7.9e-08 32.0 0.0 0.011 15.2 0.0 2.3 2 0 0 2 2 2 2 PhoH-like protein UvrD-helicase PF00580.21 gi|126179664|ref|YP_001047629.1| - 2.4e-05 24.0 0.0 3.6e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain PDDEXK_1 PF12705.7 gi|126179664|ref|YP_001047629.1| - 4.8e-05 23.4 0.0 0.00011 22.2 0.0 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Helicase_RecD PF05127.14 gi|126179664|ref|YP_001047629.1| - 0.0001 22.2 0.0 0.00025 21.0 0.0 1.6 1 0 0 1 1 1 1 Helicase DEAD PF00270.29 gi|126179664|ref|YP_001047629.1| - 0.00034 20.4 0.0 0.00055 19.8 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Viral_helicase1 PF01443.18 gi|126179664|ref|YP_001047629.1| - 0.0024 17.6 0.0 3.8 7.2 0.0 3.3 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.6 gi|126179664|ref|YP_001047629.1| - 0.0045 17.4 0.0 0.021 15.2 0.0 2.2 1 0 0 1 1 1 1 AAA ATPase domain UvrD_C_2 PF13538.6 gi|126179664|ref|YP_001047629.1| - 0.0047 16.7 0.0 0.012 15.4 0.0 1.7 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_22 PF13401.6 gi|126179664|ref|YP_001047629.1| - 0.0056 17.0 0.0 0.031 14.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|126179664|ref|YP_001047629.1| - 0.013 15.1 3.3 0.077 12.6 0.2 3.0 3 0 0 3 3 3 0 AAA domain DUF2075 PF09848.9 gi|126179664|ref|YP_001047629.1| - 0.02 14.1 0.1 7.1 5.8 0.0 2.8 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) Cas_Cas4 PF01930.17 gi|126179664|ref|YP_001047629.1| - 0.036 14.2 0.2 0.15 12.2 0.2 2.0 1 1 0 1 1 1 0 Domain of unknown function DUF83 IstB_IS21 PF01695.17 gi|126179664|ref|YP_001047629.1| - 0.04 13.7 0.0 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|126179664|ref|YP_001047629.1| - 0.056 13.2 0.0 0.16 11.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain Big_3_4 PF13754.6 gi|126179664|ref|YP_001047629.1| - 0.1 12.3 0.0 0.42 10.4 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function PIF1 PF05970.14 gi|126179664|ref|YP_001047629.1| - 0.15 11.2 0.0 12 4.9 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase FtsK_SpoIIIE PF01580.18 gi|126179664|ref|YP_001047629.1| - 0.15 11.4 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA PF00004.29 gi|126179664|ref|YP_001047629.1| - 0.19 12.2 0.0 0.47 10.9 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HhH-GPD PF00730.25 gi|126179665|ref|YP_001047630.1| - 2.3e-13 50.5 0.0 3.6e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|126179665|ref|YP_001047630.1| - 6.6e-05 22.6 0.0 0.00016 21.4 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|126179665|ref|YP_001047630.1| - 0.02 15.5 0.0 0.088 13.4 0.0 2.2 1 1 1 2 2 2 0 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|126179665|ref|YP_001047630.1| - 0.055 13.7 0.0 0.2 11.9 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif TrmB PF01978.19 gi|126179665|ref|YP_001047630.1| - 0.062 13.2 0.0 0.22 11.5 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB UvdE PF03851.14 gi|126179666|ref|YP_001047631.1| - 4e-60 203.4 0.0 5.1e-60 203.1 0.0 1.0 1 0 0 1 1 1 1 UV-endonuclease UvdE AP_endonuc_2 PF01261.24 gi|126179666|ref|YP_001047631.1| - 1.2e-06 28.1 0.1 2.1e-05 24.1 0.0 2.2 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel Fasciclin PF02469.22 gi|126179667|ref|YP_001047632.1| - 7.7e-26 90.8 0.0 9.1e-26 90.6 0.0 1.0 1 0 0 1 1 1 1 Fasciclin domain Fasciclin PF02469.22 gi|126179668|ref|YP_001047633.1| - 9.1e-24 84.1 0.0 1.1e-23 83.9 0.0 1.0 1 0 0 1 1 1 1 Fasciclin domain Fasciclin PF02469.22 gi|126179669|ref|YP_001047634.1| - 1.5e-26 93.1 0.0 1.8e-26 92.9 0.0 1.0 1 0 0 1 1 1 1 Fasciclin domain Fasciclin PF02469.22 gi|126179670|ref|YP_001047635.1| - 2.4e-19 69.8 0.0 3.1e-19 69.5 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain DUF447 PF04289.12 gi|126179671|ref|YP_001047636.1| - 1.2e-51 175.0 0.0 1.3e-51 174.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) CitG PF01874.16 gi|126179672|ref|YP_001047637.1| - 9.3e-70 235.5 3.5 1.1e-69 235.3 3.5 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Dus PF01207.17 gi|126179673|ref|YP_001047638.1| - 4e-09 36.0 0.1 2.8e-08 33.2 0.1 1.9 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) IMPDH PF00478.25 gi|126179673|ref|YP_001047638.1| - 0.046 12.7 0.4 0.054 12.5 0.4 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Ribul_P_3_epim PF00834.19 gi|126179673|ref|YP_001047638.1| - 0.086 12.2 0.0 0.19 11.1 0.1 1.6 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family DUF4149 PF13664.6 gi|126179673|ref|YP_001047638.1| - 0.19 12.0 0.0 0.36 11.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4149) Hjc PF01870.18 gi|126179674|ref|YP_001047639.1| - 9.8e-05 22.3 0.0 0.00014 21.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) CbiX PF01903.17 gi|126179675|ref|YP_001047640.1| - 7.7e-25 87.3 0.0 9.1e-25 87.1 0.0 1.1 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|126179675|ref|YP_001047640.1| - 9e-05 21.9 0.0 0.00011 21.7 0.0 1.1 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.19 gi|126179675|ref|YP_001047640.1| - 0.17 10.9 0.0 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 Ferrochelatase Mur_ligase_M PF08245.12 gi|126179676|ref|YP_001047641.1| - 0.088 12.8 0.1 0.15 12.1 0.1 1.3 1 0 0 1 1 1 0 Mur ligase middle domain Urocanase_N PF17391.2 gi|126179676|ref|YP_001047641.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Urocanase N-terminal domain Oxidored_nitro PF00148.19 gi|126179677|ref|YP_001047642.1| - 1.1e-14 54.0 0.0 1.8e-14 53.3 0.0 1.3 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase E1-N PF14463.6 gi|126179677|ref|YP_001047642.1| - 0.039 13.8 1.4 0.065 13.0 1.4 1.3 1 0 0 1 1 1 0 E1 N-terminal domain GATase_3 PF07685.14 gi|126179678|ref|YP_001047643.1| - 2.7e-37 128.3 0.0 5.6e-37 127.3 0.0 1.5 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|126179678|ref|YP_001047643.1| - 3e-17 63.1 1.6 1.7e-13 50.9 0.1 2.3 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|126179678|ref|YP_001047643.1| - 2.2e-14 53.6 0.0 3.5e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SNO PF01174.19 gi|126179678|ref|YP_001047643.1| - 0.19 11.6 0.0 0.39 10.5 0.0 1.4 1 0 0 1 1 1 0 SNO glutamine amidotransferase family Aminotran_4 PF01063.19 gi|126179679|ref|YP_001047644.1| - 1.7e-59 201.4 0.0 2e-59 201.1 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV IL15 PF02372.15 gi|126179680|ref|YP_001047645.1| - 0.019 14.9 0.2 0.02 14.9 0.2 1.0 1 0 0 1 1 1 0 Interleukin 15 Tic22 PF04278.12 gi|126179682|ref|YP_001047647.1| - 0.028 13.8 0.0 0.034 13.5 0.0 1.0 1 0 0 1 1 1 0 Tic22-like family DUF4096 PF13340.6 gi|126179683|ref|YP_001047648.1| - 3.5e-20 72.0 0.0 4.5e-20 71.7 0.0 1.1 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1_2 PF13586.6 gi|126179684|ref|YP_001047649.1| - 1.2e-17 64.0 0.2 1.5e-17 63.7 0.2 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|126179684|ref|YP_001047649.1| - 5.1e-16 59.0 0.0 8e-16 58.3 0.0 1.3 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|126179684|ref|YP_001047649.1| - 0.0013 18.4 0.0 0.0017 18.0 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease TIR-like PF10137.9 gi|126179685|ref|YP_001047650.1| - 6.1e-46 155.2 0.0 1.2e-45 154.2 0.0 1.5 1 0 0 1 1 1 1 Predicted nucleotide-binding protein containing TIR-like domain DUF2121 PF09894.9 gi|126179685|ref|YP_001047650.1| - 0.052 13.1 0.4 0.11 12.0 0.4 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2121) DinB_2 PF12867.7 gi|126179685|ref|YP_001047650.1| - 0.097 13.2 0.0 1.6 9.2 0.0 2.3 2 1 0 2 2 2 0 DinB superfamily MarR_2 PF12802.7 gi|126179687|ref|YP_001047652.1| - 0.024 14.5 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF4423 PF14394.6 gi|126179687|ref|YP_001047652.1| - 0.033 13.9 0.0 0.041 13.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) TrmB PF01978.19 gi|126179687|ref|YP_001047652.1| - 0.12 12.3 0.1 0.2 11.6 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|126179687|ref|YP_001047652.1| - 0.12 12.0 0.0 0.27 10.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF3467 PF11950.8 gi|126179688|ref|YP_001047653.1| - 1.1e-11 44.7 0.0 1.4e-11 44.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) TrmB PF01978.19 gi|126179689|ref|YP_001047654.1| - 0.00014 21.7 0.0 0.00024 20.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|126179689|ref|YP_001047654.1| - 0.11 12.3 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit ERAP1_C PF11838.8 gi|126179689|ref|YP_001047654.1| - 0.18 11.4 0.0 0.48 9.9 0.0 1.6 1 1 1 2 2 2 0 ERAP1-like C-terminal domain DUF308 PF03729.13 gi|126179691|ref|YP_001047656.1| - 1.7e-07 31.4 30.6 6.6e-05 23.2 4.0 3.3 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) YtpI PF14007.6 gi|126179691|ref|YP_001047656.1| - 0.034 14.3 0.7 0.034 14.3 0.7 2.7 1 1 2 3 3 3 0 YtpI-like protein DUF373 PF04123.13 gi|126179691|ref|YP_001047656.1| - 0.047 13.1 16.1 0.12 11.8 5.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF373) Rot1 PF10681.9 gi|126179691|ref|YP_001047656.1| - 0.11 12.0 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Chaperone for protein-folding within the ER, fungal Chromate_transp PF02417.15 gi|126179691|ref|YP_001047656.1| - 0.32 11.1 16.5 1.1 9.4 14.7 2.2 1 1 1 2 2 2 0 Chromate transporter DUF5357 PF17310.2 gi|126179691|ref|YP_001047656.1| - 0.33 9.4 5.1 0.54 8.7 5.1 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5357) DUF2070 PF09843.9 gi|126179691|ref|YP_001047656.1| - 0.48 8.7 13.9 0.66 8.2 13.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Mlo PF03094.15 gi|126179691|ref|YP_001047656.1| - 1.2 7.5 5.9 1.5 7.1 5.9 1.1 1 0 0 1 1 1 0 Mlo family GPI2 PF06432.11 gi|126179691|ref|YP_001047656.1| - 1.6 8.1 8.7 0.51 9.7 5.5 1.7 1 1 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase DUF3483 PF11982.8 gi|126179691|ref|YP_001047656.1| - 2.1 7.9 13.9 0.21 11.2 6.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3483) PsiE PF06146.12 gi|126179692|ref|YP_001047657.1| - 3.9e-16 59.2 8.9 3.9e-16 59.2 8.9 2.1 2 0 0 2 2 2 1 Phosphate-starvation-inducible E SKG6 PF08693.10 gi|126179692|ref|YP_001047657.1| - 0.044 13.2 2.9 0.044 13.2 2.9 3.2 3 0 0 3 3 3 0 Transmembrane alpha-helix domain YwiC PF14256.6 gi|126179692|ref|YP_001047657.1| - 0.057 13.7 0.1 0.057 13.7 0.1 1.8 1 1 1 2 2 2 0 YwiC-like protein DUF2484 PF10658.9 gi|126179692|ref|YP_001047657.1| - 0.067 13.5 0.6 0.067 13.5 0.6 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2484) TMEM208_SND2 PF05620.11 gi|126179692|ref|YP_001047657.1| - 0.43 10.3 3.4 0.67 9.7 0.1 2.0 2 0 0 2 2 2 0 SRP-independent targeting protein 2/TMEM208 DUF373 PF04123.13 gi|126179692|ref|YP_001047657.1| - 1.7 8.0 9.6 6.8 6.0 9.9 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF373) RseC_MucC PF04246.12 gi|126179692|ref|YP_001047657.1| - 2.8 7.9 10.3 1.8 8.5 1.3 2.2 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC LolA_like PF17131.4 gi|126179693|ref|YP_001047658.1| - 5.1e-10 39.4 0.0 3e-09 36.9 0.0 2.0 1 1 0 1 1 1 1 Outer membrane lipoprotein-sorting protein DUF4367 PF14285.6 gi|126179693|ref|YP_001047658.1| - 6e-05 23.4 0.0 0.025 15.0 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4367) MucB_RseB PF03888.14 gi|126179693|ref|YP_001047658.1| - 0.002 17.7 0.0 0.0071 15.9 0.0 1.9 1 1 0 1 1 1 1 MucB/RseB N-terminal domain DUF2092 PF09865.9 gi|126179693|ref|YP_001047658.1| - 0.0086 15.4 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 1 Predicted periplasmic protein (DUF2092) DUF1329 PF07044.11 gi|126179693|ref|YP_001047658.1| - 0.01 15.2 0.0 0.39 10.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1329) DUF1571 PF07608.11 gi|126179693|ref|YP_001047658.1| - 0.055 12.9 0.0 0.096 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1571) DUF2312 PF10073.9 gi|126179695|ref|YP_001047660.1| - 0.22 11.2 0.2 0.43 10.2 0.2 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2312) DUF2064 PF09837.9 gi|126179695|ref|YP_001047660.1| - 8.9 6.2 7.0 9.2 6.1 0.1 3.9 5 0 0 5 5 5 0 Uncharacterized protein conserved in bacteria (DUF2064) CarboxypepD_reg PF13620.6 gi|126179696|ref|YP_001047661.1| - 1.8e-07 31.4 0.5 4.9e-07 29.9 0.0 1.9 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|126179696|ref|YP_001047661.1| - 0.0027 17.7 1.1 0.019 14.9 0.0 2.6 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 1) Big_6 PF17936.1 gi|126179696|ref|YP_001047661.1| - 0.01 16.1 0.6 0.026 14.8 0.4 1.8 2 0 0 2 2 2 0 Bacterial Ig domain PEGA PF08308.11 gi|126179696|ref|YP_001047661.1| - 0.03 14.2 0.0 0.27 11.1 0.0 2.5 3 0 0 3 3 3 0 PEGA domain Big_7 PF17957.1 gi|126179696|ref|YP_001047661.1| - 0.11 13.3 0.7 0.21 12.4 0.7 1.5 1 0 0 1 1 1 0 Bacterial Ig domain YtkA PF13115.6 gi|126179696|ref|YP_001047661.1| - 0.12 13.0 0.0 0.45 11.2 0.0 2.0 2 0 0 2 2 2 0 YtkA-like PQQ_2 PF13360.6 gi|126179698|ref|YP_001047663.1| - 3e-07 30.2 2.6 9.3e-05 22.1 0.2 3.3 1 1 1 2 2 2 2 PQQ-like domain RE_HpaII PF09561.10 gi|126179698|ref|YP_001047663.1| - 0.28 10.5 0.0 0.44 9.9 0.0 1.2 1 0 0 1 1 1 0 HpaII restriction endonuclease PQQ_3 PF13570.6 gi|126179698|ref|YP_001047663.1| - 0.28 11.7 17.6 30 5.3 0.0 7.1 6 2 0 6 6 6 0 PQQ-like domain HTH_24 PF13412.6 gi|126179699|ref|YP_001047664.1| - 4.5e-21 74.2 0.0 1.3e-12 47.1 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|126179699|ref|YP_001047664.1| - 5e-18 64.9 1.6 1.3e-08 34.8 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|126179699|ref|YP_001047664.1| - 4.6e-13 48.8 0.0 5.1e-07 29.5 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|126179699|ref|YP_001047664.1| - 1.4e-12 47.3 0.3 2.7e-07 30.4 0.1 2.4 2 0 0 2 2 2 2 MarR family MarR PF01047.22 gi|126179699|ref|YP_001047664.1| - 1.6e-10 40.7 0.1 1.2e-05 25.1 0.0 2.2 2 0 0 2 2 2 2 MarR family HTH_11 PF08279.12 gi|126179699|ref|YP_001047664.1| - 9.5e-09 35.1 0.1 0.006 16.5 0.0 2.4 2 0 0 2 2 2 2 HTH domain TrmB PF01978.19 gi|126179699|ref|YP_001047664.1| - 8e-08 32.1 0.0 4.4e-05 23.3 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|126179699|ref|YP_001047664.1| - 1.1e-07 31.9 0.0 1.7e-05 24.9 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain PaaX PF07848.12 gi|126179699|ref|YP_001047664.1| - 1.6e-07 31.4 0.8 0.0045 17.2 0.2 2.4 2 0 0 2 2 2 2 PaaX-like protein HTH_IclR PF09339.10 gi|126179699|ref|YP_001047664.1| - 1.9e-07 30.8 0.2 0.023 14.5 0.0 2.7 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|126179699|ref|YP_001047664.1| - 2.5e-07 30.6 0.3 0.00015 21.7 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|126179699|ref|YP_001047664.1| - 3.8e-07 29.8 0.0 0.014 15.2 0.0 2.9 3 0 0 3 3 2 2 HTH DNA binding domain GntR PF00392.21 gi|126179699|ref|YP_001047664.1| - 1e-05 25.1 0.2 0.027 14.1 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|126179699|ref|YP_001047664.1| - 6.4e-05 23.0 0.9 0.43 10.7 0.2 2.9 2 1 0 2 2 2 2 Helix-turn-helix domain Rrf2 PF02082.20 gi|126179699|ref|YP_001047664.1| - 0.00018 21.8 0.0 0.63 10.4 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_CodY PF08222.11 gi|126179699|ref|YP_001047664.1| - 0.00051 19.5 0.0 0.77 9.4 0.0 2.3 2 0 0 2 2 2 2 CodY helix-turn-helix domain HTH_34 PF13601.6 gi|126179699|ref|YP_001047664.1| - 0.00061 19.9 0.0 0.093 12.9 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain RP-C PF03428.13 gi|126179699|ref|YP_001047664.1| - 0.0011 18.7 0.1 1.3 8.7 0.0 2.3 2 0 0 2 2 2 2 Replication protein C N-terminal domain HTH_27 PF13463.6 gi|126179699|ref|YP_001047664.1| - 0.0013 19.2 0.0 0.0029 18.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|126179699|ref|YP_001047664.1| - 0.0017 18.1 0.1 0.0065 16.2 0.0 2.0 2 0 0 2 2 2 1 LexA DNA binding domain TFIIE_alpha PF02002.17 gi|126179699|ref|YP_001047664.1| - 0.0017 18.2 0.0 0.15 11.9 0.0 2.2 2 0 0 2 2 2 1 TFIIE alpha subunit FaeA PF04703.12 gi|126179699|ref|YP_001047664.1| - 0.0033 17.8 0.0 0.72 10.3 0.0 2.3 2 0 0 2 2 2 1 FaeA-like protein HTH_AsnC-type PF13404.6 gi|126179699|ref|YP_001047664.1| - 0.0038 17.0 0.3 0.042 13.7 0.2 2.4 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_8 PF02954.19 gi|126179699|ref|YP_001047664.1| - 0.0045 16.8 0.9 0.51 10.2 0.2 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_30 PF13556.6 gi|126179699|ref|YP_001047664.1| - 0.0048 16.7 0.0 0.17 11.7 0.0 2.5 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_23 PF13384.6 gi|126179699|ref|YP_001047664.1| - 0.0083 15.9 0.0 0.85 9.5 0.0 2.8 2 0 0 2 2 2 1 Homeodomain-like domain BLACT_WH PF17778.1 gi|126179699|ref|YP_001047664.1| - 0.014 15.4 0.1 0.56 10.2 0.1 2.5 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain Crp PF00325.20 gi|126179699|ref|YP_001047664.1| - 0.016 14.8 0.1 0.62 9.8 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family Sigma70_r4_2 PF08281.12 gi|126179699|ref|YP_001047664.1| - 0.022 14.4 0.0 2.6 7.8 0.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_50 PF18024.1 gi|126179699|ref|YP_001047664.1| - 0.029 14.0 0.1 8.7 6.0 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_WhiA PF02650.14 gi|126179699|ref|YP_001047664.1| - 0.033 14.5 0.1 0.087 13.2 0.1 1.6 2 0 0 2 2 1 0 WhiA C-terminal HTH domain HrcA_DNA-bdg PF03444.15 gi|126179699|ref|YP_001047664.1| - 0.039 13.6 0.0 0.1 12.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_DeoR PF08220.12 gi|126179699|ref|YP_001047664.1| - 0.039 13.7 0.0 3.1 7.6 0.0 2.3 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain MerR_1 PF13411.6 gi|126179699|ref|YP_001047664.1| - 0.049 13.7 0.1 3.4 7.8 0.0 2.3 2 0 0 2 2 2 0 MerR HTH family regulatory protein Sulfolobus_pRN PF05584.11 gi|126179699|ref|YP_001047664.1| - 0.052 13.6 0.1 7.1 6.7 0.0 2.4 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein HTH_12 PF08461.10 gi|126179699|ref|YP_001047664.1| - 0.068 13.1 0.1 7.1 6.7 0.0 2.5 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_1 PF00126.27 gi|126179699|ref|YP_001047664.1| - 0.082 12.9 0.0 0.43 10.6 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_36 PF13730.6 gi|126179699|ref|YP_001047664.1| - 0.12 12.3 0.2 5.7 7.0 0.0 3.0 3 1 1 4 4 3 0 Helix-turn-helix domain Phage_CI_repr PF07022.13 gi|126179699|ref|YP_001047664.1| - 0.12 12.5 0.0 0.81 9.8 0.0 2.0 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain GerE PF00196.19 gi|126179699|ref|YP_001047664.1| - 0.18 11.4 0.0 3.4 7.3 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Acetyltransf_3 PF13302.7 gi|126179700|ref|YP_001047665.1| - 5.7e-13 49.7 0.0 7.1e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|126179700|ref|YP_001047665.1| - 2.2e-09 37.6 0.0 2.7e-09 37.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 gi|126179700|ref|YP_001047665.1| - 0.0025 17.5 0.0 0.0032 17.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain HSP20 PF00011.21 gi|126179701|ref|YP_001047666.1| - 1.4e-13 50.8 0.1 2.7e-13 49.9 0.1 1.4 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|126179701|ref|YP_001047666.1| - 7.4e-09 35.0 0.1 1.6e-08 34.0 0.1 1.6 1 0 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|126179701|ref|YP_001047666.1| - 0.0021 18.1 0.5 0.058 13.5 0.2 2.3 2 0 0 2 2 2 1 GvpH Adeno_PVIII PF01310.18 gi|126179701|ref|YP_001047666.1| - 0.13 11.8 0.1 0.15 11.6 0.1 1.2 1 0 0 1 1 1 0 Adenovirus hexon associated protein, protein VIII UDG PF03167.19 gi|126179702|ref|YP_001047667.1| - 5.7e-07 29.6 0.0 1e-06 28.9 0.0 1.4 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DEAD PF00270.29 gi|126179703|ref|YP_001047668.1| - 1.1e-50 171.9 0.1 2.7e-50 170.5 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|126179703|ref|YP_001047668.1| - 4.3e-33 114.0 0.1 2.3e-30 105.2 0.0 2.8 3 0 0 3 3 3 2 Helicase conserved C-terminal domain DbpA PF03880.15 gi|126179703|ref|YP_001047668.1| - 1.2e-21 76.5 0.0 3e-21 75.2 0.0 1.8 1 0 0 1 1 1 1 DbpA RNA binding domain ResIII PF04851.15 gi|126179703|ref|YP_001047668.1| - 1.7e-07 31.4 0.0 3.8e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_RecD PF05127.14 gi|126179703|ref|YP_001047668.1| - 0.025 14.4 0.0 0.048 13.5 0.0 1.4 1 0 0 1 1 1 0 Helicase CMS1 PF14617.6 gi|126179703|ref|YP_001047668.1| - 0.031 13.6 0.0 0.072 12.4 0.0 1.5 1 0 0 1 1 1 0 U3-containing 90S pre-ribosomal complex subunit PTPlike_phytase PF14566.6 gi|126179703|ref|YP_001047668.1| - 0.038 14.1 0.0 0.1 12.7 0.0 1.7 1 0 0 1 1 1 0 Inositol hexakisphosphate Glycos_transf_1 PF00534.20 gi|126179706|ref|YP_001047671.1| - 2.4e-27 95.6 0.0 3.6e-27 95.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126179706|ref|YP_001047671.1| - 6.7e-15 55.7 0.0 9.5e-15 55.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|126179706|ref|YP_001047671.1| - 8.1e-09 35.8 0.0 1.7e-08 34.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Methyltransf_21 PF05050.12 gi|126179707|ref|YP_001047672.1| - 1.6e-07 31.5 0.0 1.9e-06 28.0 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.11 gi|126179707|ref|YP_001047672.1| - 0.00078 18.8 0.0 0.0012 18.2 0.0 1.3 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.16 gi|126179707|ref|YP_001047672.1| - 0.002 17.9 0.0 0.003 17.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein FKBP_C PF00254.28 gi|126179708|ref|YP_001047673.1| - 1.1e-28 99.3 0.0 1.9e-28 98.6 0.0 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase HHH_8 PF14716.6 gi|126179709|ref|YP_001047674.1| - 4.4e-24 84.6 3.1 1.3e-20 73.5 0.3 3.7 2 1 1 3 3 3 1 Helix-hairpin-helix domain DNA_pol_B_thumb PF14791.6 gi|126179709|ref|YP_001047674.1| - 3.3e-22 78.4 0.1 8.5e-22 77.1 0.1 1.8 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_5 PF14520.6 gi|126179709|ref|YP_001047674.1| - 4.2e-15 56.1 4.8 4.6e-11 43.2 0.4 3.6 4 0 0 4 4 4 2 Helix-hairpin-helix domain PHP PF02811.19 gi|126179709|ref|YP_001047674.1| - 1.4e-06 28.7 0.0 2.2e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 PHP domain DNA_pol_B_palm PF14792.6 gi|126179709|ref|YP_001047674.1| - 1.7e-05 25.0 0.3 0.00014 22.1 0.0 2.2 2 0 0 2 2 2 1 DNA polymerase beta palm HHH PF00633.23 gi|126179709|ref|YP_001047674.1| - 7.1e-05 22.5 3.6 0.54 10.2 0.1 4.1 4 0 0 4 4 4 2 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|126179709|ref|YP_001047674.1| - 0.00051 20.2 1.0 2.9 8.4 0.0 3.4 3 0 0 3 3 3 2 IMS family HHH motif HHH_2 PF12826.7 gi|126179709|ref|YP_001047674.1| - 0.00068 19.7 0.1 0.87 9.7 0.0 3.4 2 1 1 3 3 3 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|126179709|ref|YP_001047674.1| - 0.00081 19.6 0.0 0.47 10.7 0.0 2.8 2 0 0 2 2 2 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|126179709|ref|YP_001047674.1| - 0.0011 18.8 0.0 0.018 14.8 0.0 2.8 3 0 0 3 3 3 1 Fingers domain of DNA polymerase lambda HHH_3 PF12836.7 gi|126179709|ref|YP_001047674.1| - 0.1 12.9 0.1 20 5.5 0.0 3.1 2 1 1 3 3 3 0 Helix-hairpin-helix motif Transposase_20 PF02371.16 gi|126179709|ref|YP_001047674.1| - 0.11 12.8 0.2 5.6 7.4 0.0 3.3 3 0 0 3 3 3 0 Transposase IS116/IS110/IS902 family DUF5518 PF17647.1 gi|126179710|ref|YP_001047675.1| - 6.8 6.9 30.7 1.8 8.8 14.3 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5518) RuvA_C PF07499.13 gi|126179711|ref|YP_001047676.1| - 0.002 18.6 1.5 0.0024 18.3 0.1 1.8 2 0 0 2 2 2 1 RuvA, C-terminal domain FHA PF00498.26 gi|126179713|ref|YP_001047678.1| - 1e-13 51.4 0.0 1.5e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 FHA domain HTH_5 PF01022.20 gi|126179713|ref|YP_001047678.1| - 1.1e-06 28.4 0.9 1.7e-06 27.8 0.2 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Yop-YscD_cpl PF16697.5 gi|126179713|ref|YP_001047678.1| - 3.2e-06 27.3 0.0 2.1e-05 24.7 0.0 2.1 1 1 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain HTH_45 PF14947.6 gi|126179713|ref|YP_001047678.1| - 0.00011 22.1 0.0 0.00026 20.9 0.0 1.6 1 1 1 2 2 2 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|126179713|ref|YP_001047678.1| - 0.00044 20.3 0.1 0.0013 18.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|126179713|ref|YP_001047678.1| - 0.013 15.4 0.1 0.024 14.5 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Dimerisation2 PF16864.5 gi|126179713|ref|YP_001047678.1| - 0.034 14.1 0.0 0.082 12.9 0.0 1.5 2 0 0 2 2 2 0 Dimerisation domain Pkinase PF00069.25 gi|126179714|ref|YP_001047679.1| - 1.3e-41 142.7 0.0 2.2e-41 142.0 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|126179714|ref|YP_001047679.1| - 7.4e-31 107.4 0.0 1e-30 106.9 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase APH PF01636.23 gi|126179714|ref|YP_001047679.1| - 0.00012 22.1 0.0 0.00037 20.5 0.0 1.6 1 1 0 1 1 1 1 Phosphotransferase enzyme family Kinase-like PF14531.6 gi|126179714|ref|YP_001047679.1| - 0.0017 17.8 0.0 0.0025 17.2 0.0 1.2 1 0 0 1 1 1 1 Kinase-like Metal_resist PF13801.6 gi|126179714|ref|YP_001047679.1| - 0.0046 17.1 2.2 0.57 10.4 0.3 2.5 2 0 0 2 2 2 2 Heavy-metal resistance Kdo PF06293.14 gi|126179714|ref|YP_001047679.1| - 0.17 11.2 0.0 0.28 10.5 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.22 gi|126179714|ref|YP_001047679.1| - 0.26 10.9 0.0 0.38 10.3 0.0 1.3 1 0 0 1 1 1 0 RIO1 family Ion_trans_2 PF07885.16 gi|126179715|ref|YP_001047680.1| - 9e-14 51.2 5.7 9e-14 51.2 5.7 2.7 3 1 0 3 3 3 1 Ion channel Ion_trans PF00520.31 gi|126179715|ref|YP_001047680.1| - 0.0079 15.5 1.9 0.014 14.6 1.9 1.7 1 1 0 1 1 1 1 Ion transport protein DUF1345 PF07077.11 gi|126179715|ref|YP_001047680.1| - 0.2 11.3 8.8 0.15 11.8 2.6 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1345) PAP2 PF01569.21 gi|126179715|ref|YP_001047680.1| - 1.6 8.5 14.8 1.8 8.4 9.1 2.9 2 1 0 2 2 2 0 PAP2 superfamily SIMPL PF04402.14 gi|126179716|ref|YP_001047681.1| - 3.9e-45 154.8 9.8 4.5e-45 154.6 9.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) DUF1657 PF07870.11 gi|126179716|ref|YP_001047681.1| - 0.0012 18.7 0.3 0.0024 17.7 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1657) OmpA PF00691.20 gi|126179716|ref|YP_001047681.1| - 0.059 13.8 0.6 0.15 12.5 0.1 1.9 2 0 0 2 2 2 0 OmpA family DUF1442 PF07279.11 gi|126179716|ref|YP_001047681.1| - 0.07 12.4 0.7 0.31 10.3 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1442) Carbam_trans_N PF02543.15 gi|126179716|ref|YP_001047681.1| - 0.072 12.7 0.1 0.08 12.6 0.1 1.3 1 0 0 1 1 1 0 Carbamoyltransferase N-terminus HlyD_D4 PF16572.5 gi|126179716|ref|YP_001047681.1| - 0.16 11.9 0.0 0.42 10.5 0.0 1.7 1 0 0 1 1 1 0 Long alpha hairpin domain of cation efflux system protein, CusB Lactamase_B PF00753.27 gi|126179717|ref|YP_001047682.1| - 3.9e-08 33.5 4.3 5.9e-08 32.9 4.3 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|126179717|ref|YP_001047682.1| - 6e-05 22.6 1.1 9.3e-05 22.0 0.9 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain MS_channel PF00924.18 gi|126179718|ref|YP_001047683.1| - 8.6e-58 195.3 0.9 1.2e-57 194.8 0.9 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|126179718|ref|YP_001047683.1| - 0.021 14.8 0.2 0.021 14.8 0.2 2.2 2 0 0 2 2 2 0 Conserved TM helix DUF432 PF04254.13 gi|126179719|ref|YP_001047684.1| - 1.7e-46 157.4 0.2 2.3e-46 157.0 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) PAS_4 PF08448.10 gi|126179720|ref|YP_001047685.1| - 1.6e-23 83.1 0.6 1.9e-13 50.6 0.1 2.9 2 1 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|126179720|ref|YP_001047685.1| - 5.1e-21 75.3 0.1 1.1e-20 74.2 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|126179720|ref|YP_001047685.1| - 4.5e-17 62.1 0.1 5.1e-07 29.7 0.0 3.5 2 1 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|126179720|ref|YP_001047685.1| - 1.3e-11 44.6 0.0 5.9e-07 29.7 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|126179720|ref|YP_001047685.1| - 3.7e-05 23.6 0.0 0.0039 17.2 0.0 2.8 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.12 gi|126179720|ref|YP_001047685.1| - 4.9e-05 23.5 0.0 0.015 15.6 0.0 2.8 3 0 0 3 3 3 1 PAS fold HATPase_c_5 PF14501.6 gi|126179720|ref|YP_001047685.1| - 0.00096 19.0 0.0 0.0024 17.8 0.0 1.6 1 0 0 1 1 1 1 GHKL domain dCache_3 PF14827.6 gi|126179720|ref|YP_001047685.1| - 0.0072 16.0 0.0 0.38 10.4 0.0 2.2 2 0 0 2 2 2 1 Double sensory domain of two-component sensor kinase HATPase_c_2 PF13581.6 gi|126179720|ref|YP_001047685.1| - 0.014 15.3 0.0 0.03 14.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|126179720|ref|YP_001047685.1| - 0.017 15.3 0.0 0.77 9.9 0.0 2.9 3 1 0 3 3 3 0 PAS fold DUF2111 PF09884.9 gi|126179720|ref|YP_001047685.1| - 0.024 14.7 0.1 0.27 11.3 0.0 2.7 4 0 0 4 4 4 0 Uncharacterized protein conserved in archaea (DUF2111) KH_2 PF07650.17 gi|126179721|ref|YP_001047686.1| - 7.2e-18 64.2 2.4 7e-13 48.2 0.3 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|126179721|ref|YP_001047686.1| - 8.4e-14 51.4 1.6 5.2e-12 45.7 0.2 2.1 2 0 0 2 2 2 2 NusA-like KH domain KH_4 PF13083.6 gi|126179721|ref|YP_001047686.1| - 1.5e-10 40.8 0.5 5.8e-05 22.9 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|126179721|ref|YP_001047686.1| - 5.7e-06 26.1 2.1 0.0016 18.2 0.3 2.2 2 0 0 2 2 2 2 KH domain PRA-PH PF01503.17 gi|126179722|ref|YP_001047687.1| - 8.6e-14 51.7 0.4 1.2e-13 51.3 0.4 1.3 1 1 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|126179722|ref|YP_001047687.1| - 0.0081 16.3 0.2 0.0081 16.3 0.2 1.5 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain Corona_NS2 PF04753.12 gi|126179722|ref|YP_001047687.1| - 0.018 15.6 0.0 0.024 15.2 0.0 1.3 1 0 0 1 1 1 0 Coronavirus non-structural protein NS2 DNase-RNase PF02577.14 gi|126179723|ref|YP_001047688.1| - 5.1e-36 123.2 0.1 5.7e-36 123.0 0.1 1.0 1 0 0 1 1 1 1 Bifunctional nuclease LPG_synthase_TM PF03706.13 gi|126179724|ref|YP_001047689.1| - 4.3e-58 197.2 31.6 5.5e-58 196.9 31.6 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DUF357 PF04010.13 gi|126179725|ref|YP_001047690.1| - 2.5e-47 158.8 7.4 1.1e-23 83.0 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF357) TPR_1 PF00515.28 gi|126179725|ref|YP_001047690.1| - 0.028 14.2 1.0 1.3 8.9 0.2 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|126179725|ref|YP_001047690.1| - 0.4 10.9 3.1 2.1 8.7 1.5 2.7 2 1 0 2 2 2 0 Tetratricopeptide repeat TP_methylase PF00590.20 gi|126179726|ref|YP_001047691.1| - 3.2e-20 73.0 0.3 3.8e-20 72.7 0.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases FeoB_N PF02421.18 gi|126179727|ref|YP_001047692.1| - 9.5e-50 168.2 0.0 1.6e-49 167.4 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|126179727|ref|YP_001047692.1| - 8.4e-20 71.1 30.4 1e-10 41.8 4.5 3.4 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|126179727|ref|YP_001047692.1| - 1.9e-19 69.8 0.0 3.1e-19 69.1 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|126179727|ref|YP_001047692.1| - 6.1e-13 48.2 1.9 6.1e-13 48.2 1.9 3.1 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus FeoB_Cyto PF17910.1 gi|126179727|ref|YP_001047692.1| - 0.003 18.1 0.1 0.0069 16.9 0.1 1.6 1 1 0 1 1 1 1 FeoB cytosolic helical domain Dynamin_N PF00350.23 gi|126179727|ref|YP_001047692.1| - 0.022 14.8 0.4 0.71 9.9 0.0 2.3 1 1 1 2 2 2 0 Dynamin family SRPRB PF09439.10 gi|126179727|ref|YP_001047692.1| - 0.065 12.7 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Fe_dep_repr_C PF02742.15 gi|126179728|ref|YP_001047693.1| - 5.2e-19 68.1 0.1 4.8e-18 65.0 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain FeoA PF04023.14 gi|126179728|ref|YP_001047693.1| - 5.9e-13 48.9 0.3 1.3e-12 47.8 0.3 1.6 1 0 0 1 1 1 1 FeoA domain Fe_dep_repress PF01325.19 gi|126179728|ref|YP_001047693.1| - 4.3e-05 23.6 0.0 9.1e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|126179728|ref|YP_001047693.1| - 0.0023 17.8 0.3 0.0088 15.9 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|126179728|ref|YP_001047693.1| - 0.0062 17.0 0.2 0.019 15.4 0.1 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|126179728|ref|YP_001047693.1| - 0.097 13.0 0.0 0.33 11.3 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator MarR PF01047.22 gi|126179728|ref|YP_001047693.1| - 0.11 12.5 0.0 0.33 10.9 0.0 1.7 2 0 0 2 2 2 0 MarR family HHH_8 PF14716.6 gi|126179729|ref|YP_001047694.1| - 1.4e-19 70.2 3.0 6.7e-19 68.0 0.9 2.8 3 0 0 3 3 3 1 Helix-hairpin-helix domain DNA_pol_B_thumb PF14791.6 gi|126179729|ref|YP_001047694.1| - 2.3e-12 46.9 0.0 5.5e-12 45.7 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_5 PF14520.6 gi|126179729|ref|YP_001047694.1| - 7.3e-11 42.5 1.1 3.7e-05 24.2 0.1 3.0 2 0 0 2 2 2 2 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|126179729|ref|YP_001047694.1| - 8.8e-05 22.3 0.1 0.0047 16.7 0.0 3.0 3 0 0 3 3 3 1 Fingers domain of DNA polymerase lambda PHP PF02811.19 gi|126179729|ref|YP_001047694.1| - 0.00019 21.8 0.0 0.00039 20.8 0.0 1.5 1 0 0 1 1 1 1 PHP domain DNA_pol_B_palm PF14792.6 gi|126179729|ref|YP_001047694.1| - 0.0009 19.4 0.0 0.0028 17.9 0.0 1.8 1 0 0 1 1 1 1 DNA polymerase beta palm HHH_2 PF12826.7 gi|126179729|ref|YP_001047694.1| - 0.0047 17.0 0.5 0.083 13.0 0.0 2.8 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|126179729|ref|YP_001047694.1| - 0.0096 16.2 0.0 0.17 12.1 0.0 2.6 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|126179729|ref|YP_001047694.1| - 0.06 13.2 0.6 0.21 11.5 0.1 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|126179729|ref|YP_001047694.1| - 0.099 12.9 0.0 1.6 9.0 0.0 2.3 1 1 1 2 2 2 0 Pathogenicity locus CW_binding_2 PF04122.12 gi|126179729|ref|YP_001047694.1| - 0.16 12.7 1.5 0.7 10.6 0.2 2.5 2 0 0 2 2 2 0 Putative cell wall binding repeat 2 Prenyltransf PF01255.19 gi|126179730|ref|YP_001047695.1| - 2e-21 76.5 0.0 5.2e-21 75.2 0.0 1.6 1 1 1 2 2 2 1 Putative undecaprenyl diphosphate synthase Prenyltransf PF01255.19 gi|126179731|ref|YP_001047696.1| - 3.2e-64 216.5 0.0 3.8e-64 216.3 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Fer4_14 PF13394.6 gi|126179732|ref|YP_001047697.1| - 4.1e-06 26.9 0.0 7.2e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|126179732|ref|YP_001047697.1| - 9.4e-06 26.1 0.1 2.3e-05 24.8 0.1 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|126179732|ref|YP_001047697.1| - 4e-05 23.9 0.0 6.2e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF1850 PF08905.11 gi|126179732|ref|YP_001047697.1| - 0.1 12.9 0.0 0.27 11.6 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1850) Radical_SAM PF04055.21 gi|126179733|ref|YP_001047698.1| - 1.7e-05 25.3 0.1 4.3e-05 23.9 0.1 1.7 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|126179733|ref|YP_001047698.1| - 0.00012 22.2 0.0 0.00025 21.2 0.0 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|126179733|ref|YP_001047698.1| - 0.00017 21.9 0.0 0.00031 21.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF1308 PF07000.11 gi|126179733|ref|YP_001047698.1| - 0.24 11.3 0.0 0.47 10.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1308) DUF2072 PF09845.9 gi|126179734|ref|YP_001047699.1| - 3.6e-47 159.9 1.6 4.2e-47 159.7 1.6 1.0 1 0 0 1 1 1 1 Zn-ribbon containing protein Zn-ribbon_8 PF09723.10 gi|126179734|ref|YP_001047699.1| - 0.0013 18.8 3.5 0.0037 17.4 3.5 1.8 1 0 0 1 1 1 1 Zinc ribbon domain DUF1451 PF07295.11 gi|126179734|ref|YP_001047699.1| - 0.0068 16.5 1.1 0.0068 16.5 1.1 1.8 1 1 1 2 2 2 1 Zinc-ribbon containing domain HypA PF01155.19 gi|126179734|ref|YP_001047699.1| - 0.021 14.8 1.9 0.023 14.7 0.7 1.7 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|126179734|ref|YP_001047699.1| - 0.022 14.5 3.4 0.046 13.5 3.4 1.5 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|126179734|ref|YP_001047699.1| - 0.04 13.4 0.4 7.1 6.2 0.0 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding RuvC_1 PF18516.1 gi|126179734|ref|YP_001047699.1| - 0.053 12.7 0.0 0.061 12.5 0.0 1.1 1 0 0 1 1 1 0 RuvC nuclease domain DUF4776 PF16003.5 gi|126179734|ref|YP_001047699.1| - 0.069 12.1 0.1 0.09 11.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) Prok-RING_1 PF14446.6 gi|126179734|ref|YP_001047699.1| - 0.098 12.6 0.9 0.21 11.5 0.9 1.6 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF3141 PF11339.8 gi|126179734|ref|YP_001047699.1| - 0.11 11.0 0.1 0.11 10.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3141) zf-C2H2_4 PF13894.6 gi|126179734|ref|YP_001047699.1| - 0.17 12.8 2.7 1.5 9.8 0.3 2.3 1 1 1 2 2 2 0 C2H2-type zinc finger TFIIS_C PF01096.18 gi|126179734|ref|YP_001047699.1| - 0.22 11.4 2.2 6.8 6.6 0.1 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) YhfH PF14149.6 gi|126179734|ref|YP_001047699.1| - 0.22 11.5 3.7 2.6 8.1 0.3 2.5 2 0 0 2 2 2 0 YhfH-like protein zf-C2H2_6 PF13912.6 gi|126179734|ref|YP_001047699.1| - 0.3 11.1 0.3 0.3 11.1 0.3 1.7 2 0 0 2 2 2 0 C2H2-type zinc finger DUF2073 PF09846.9 gi|126179735|ref|YP_001047700.1| - 4.3e-48 161.5 0.2 5.1e-48 161.3 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.23 gi|126179736|ref|YP_001047701.1| - 1.5e-15 57.2 0.0 2e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|126179736|ref|YP_001047701.1| - 6.6e-09 35.6 0.2 0.0026 17.3 0.1 3.3 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|126179736|ref|YP_001047701.1| - 6.3e-07 29.0 0.0 0.0048 16.4 0.0 2.5 2 1 0 2 2 2 2 ADP-ribosylation factor family SRPRB PF09439.10 gi|126179736|ref|YP_001047701.1| - 6.9e-06 25.6 0.0 0.13 11.7 0.0 2.3 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|126179736|ref|YP_001047701.1| - 1.6e-05 24.8 0.0 0.023 14.6 0.0 2.1 2 0 0 2 2 2 2 RsgA GTPase FeoB_N PF02421.18 gi|126179736|ref|YP_001047701.1| - 3.6e-05 23.3 0.1 0.00024 20.7 0.1 2.2 1 1 0 1 1 1 1 Ferrous iron transport protein B Septin PF00735.18 gi|126179736|ref|YP_001047701.1| - 0.0016 17.8 0.0 0.0019 17.6 0.0 1.2 1 0 0 1 1 1 1 Septin ATPase_2 PF01637.18 gi|126179736|ref|YP_001047701.1| - 0.003 17.5 0.1 0.0062 16.5 0.1 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea Roc PF08477.13 gi|126179736|ref|YP_001047701.1| - 0.0059 16.8 0.0 0.055 13.7 0.0 2.1 1 1 1 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 gi|126179736|ref|YP_001047701.1| - 0.0071 16.4 0.0 3.1 7.8 0.0 2.2 1 1 1 2 2 2 2 Dynamin family AAA_18 PF13238.6 gi|126179736|ref|YP_001047701.1| - 0.0089 16.6 0.0 0.034 14.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|126179736|ref|YP_001047701.1| - 0.012 15.3 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|126179736|ref|YP_001047701.1| - 0.017 15.5 0.0 0.054 13.9 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MeaB PF03308.16 gi|126179736|ref|YP_001047701.1| - 0.018 14.1 0.1 0.44 9.5 0.0 2.6 2 1 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA_helicase PF00910.22 gi|126179736|ref|YP_001047701.1| - 0.027 14.9 0.0 0.04 14.3 0.0 1.3 1 0 0 1 1 1 0 RNA helicase TniB PF05621.11 gi|126179736|ref|YP_001047701.1| - 0.033 13.6 0.0 0.11 11.9 0.0 1.8 2 0 0 2 2 2 0 Bacterial TniB protein NACHT PF05729.12 gi|126179736|ref|YP_001047701.1| - 0.039 13.9 0.0 0.53 10.2 0.0 2.2 2 0 0 2 2 2 0 NACHT domain AAA_16 PF13191.6 gi|126179736|ref|YP_001047701.1| - 0.045 14.1 0.0 0.062 13.7 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.22 gi|126179736|ref|YP_001047701.1| - 0.05 12.8 0.0 0.075 12.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain MMR_HSR1_Xtn PF16897.5 gi|126179736|ref|YP_001047701.1| - 0.071 13.1 0.0 0.1 12.6 0.0 1.4 1 1 0 1 1 1 0 C-terminal region of MMR_HSR1 domain MnmE_helical PF12631.7 gi|126179736|ref|YP_001047701.1| - 0.076 13.2 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 MnmE helical domain Parvo_NS1 PF01057.17 gi|126179736|ref|YP_001047701.1| - 0.15 11.2 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 cobW PF02492.19 gi|126179736|ref|YP_001047701.1| - 0.15 11.6 0.1 1.6 8.3 0.1 2.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|126179736|ref|YP_001047701.1| - 0.18 12.3 0.0 0.55 10.8 0.0 1.7 1 1 0 1 1 1 0 ABC transporter CBS PF00571.28 gi|126179737|ref|YP_001047702.1| - 4.2e-20 71.9 5.8 3.1e-14 53.1 2.0 2.3 2 0 0 2 2 2 2 CBS domain Zn-ribbon_8 PF09723.10 gi|126179737|ref|YP_001047702.1| - 0.02 15.0 0.5 0.042 14.0 0.5 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf-FPG_IleRS PF06827.14 gi|126179737|ref|YP_001047702.1| - 0.021 14.7 0.2 0.049 13.5 0.2 1.6 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS RecR PF02132.15 gi|126179737|ref|YP_001047702.1| - 0.034 13.7 0.8 0.034 13.7 0.8 2.0 2 0 0 2 2 2 0 RecR protein CBS PF00571.28 gi|126179738|ref|YP_001047703.1| - 7e-34 116.1 11.5 3.8e-12 46.5 1.8 4.1 4 0 0 4 4 4 4 CBS domain Smac_DIABLO PF09057.10 gi|126179738|ref|YP_001047703.1| - 0.16 11.3 0.0 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 Second Mitochondria-derived Activator of Caspases CBS PF00571.28 gi|126179739|ref|YP_001047704.1| - 1e-45 153.9 13.5 1.8e-11 44.3 0.5 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|126179740|ref|YP_001047705.1| - 6.4e-44 148.2 13.3 2.5e-12 47.1 0.9 4.3 4 0 0 4 4 4 4 CBS domain Dimer_Tnp_hAT PF05699.14 gi|126179740|ref|YP_001047705.1| - 0.0085 15.9 0.0 2.9 7.7 0.0 2.5 2 0 0 2 2 2 2 hAT family C-terminal dimerisation region CBS PF00571.28 gi|126179741|ref|YP_001047706.1| - 1.4e-28 99.1 11.7 1.8e-09 37.9 0.2 4.1 4 0 0 4 4 4 4 CBS domain GDI PF00996.18 gi|126179741|ref|YP_001047706.1| - 0.039 12.5 0.1 2 6.9 0.0 2.6 2 1 1 3 3 3 0 GDP dissociation inhibitor DUF3659 PF12396.8 gi|126179741|ref|YP_001047706.1| - 0.15 12.0 1.5 16 5.5 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) DS PF01916.17 gi|126179742|ref|YP_001047707.1| - 8.5e-98 327.1 0.0 9.6e-98 327.0 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Glyco_hydro_36N PF16875.5 gi|126179742|ref|YP_001047707.1| - 0.089 12.3 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 36 N-terminal domain Ribosomal_S13 PF00416.22 gi|126179743|ref|YP_001047708.1| - 3.2e-41 140.7 2.9 3.7e-41 140.5 2.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 TFIIIC_sub6 PF10419.9 gi|126179743|ref|YP_001047708.1| - 0.026 14.4 0.0 0.039 13.8 0.0 1.3 1 0 0 1 1 1 0 TFIIIC subunit triple barrel domain FbpA PF05833.11 gi|126179743|ref|YP_001047708.1| - 0.047 12.5 0.0 0.05 12.4 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) NCD2 PF04905.13 gi|126179743|ref|YP_001047708.1| - 0.07 13.1 0.0 0.099 12.6 0.0 1.2 1 0 0 1 1 1 0 NAB conserved region 2 (NCD2) S4 PF01479.25 gi|126179744|ref|YP_001047709.1| - 6e-14 51.5 0.1 1.3e-13 50.5 0.1 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S11 PF00411.19 gi|126179745|ref|YP_001047710.1| - 8.3e-48 161.4 8.7 2.8e-47 159.7 8.7 1.7 1 1 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.10 gi|126179745|ref|YP_001047710.1| - 0.035 13.8 0.5 0.044 13.5 0.5 1.2 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) BKACE PF05853.12 gi|126179745|ref|YP_001047710.1| - 0.036 13.4 0.2 0.044 13.1 0.2 1.1 1 0 0 1 1 1 0 beta-keto acid cleavage enzyme RNA_pol_A_bac PF01000.26 gi|126179746|ref|YP_001047711.1| - 6.4e-29 100.6 0.0 1.9e-28 99.1 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|126179746|ref|YP_001047711.1| - 2.5e-18 65.2 0.0 5e-18 64.3 0.0 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.27 gi|126179746|ref|YP_001047711.1| - 3.6e-06 26.5 13.8 0.00014 21.5 3.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126179746|ref|YP_001047711.1| - 3.2e-05 24.4 9.0 3.2e-05 24.4 9.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126179746|ref|YP_001047711.1| - 0.00015 21.8 10.5 0.00015 21.8 10.5 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126179746|ref|YP_001047711.1| - 0.00034 20.6 8.9 0.00034 20.6 8.9 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126179746|ref|YP_001047711.1| - 0.0004 20.3 11.4 0.0017 18.3 3.6 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|126179746|ref|YP_001047711.1| - 0.0054 16.8 3.0 0.0054 16.8 3.0 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|126179746|ref|YP_001047711.1| - 0.014 15.8 22.7 0.032 14.7 2.1 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|126179746|ref|YP_001047711.1| - 0.022 15.7 1.2 0.022 15.7 1.2 3.2 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|126179746|ref|YP_001047711.1| - 0.024 15.3 3.4 0.024 15.3 3.4 3.0 2 2 1 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|126179746|ref|YP_001047711.1| - 0.94 10.1 20.8 1.1 9.9 13.6 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126179746|ref|YP_001047711.1| - 1.7 8.9 19.2 0.1 12.7 3.3 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Ribosomal_L18 PF17135.4 gi|126179747|ref|YP_001047712.1| - 8.5e-13 48.1 0.1 9.5e-13 48.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|126179747|ref|YP_001047712.1| - 1.9e-07 31.8 0.2 9.7e-07 29.5 0.2 1.9 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L13 PF00572.18 gi|126179748|ref|YP_001047713.1| - 7.2e-07 29.5 0.1 6.5e-05 23.2 0.1 2.2 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|126179749|ref|YP_001047714.1| - 1.7e-32 112.4 0.0 2e-32 112.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|126179750|ref|YP_001047715.1| - 2.4e-29 101.4 0.4 2.6e-29 101.3 0.4 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit RNA_pol_Rpb6 PF01192.22 gi|126179751|ref|YP_001047716.1| - 2.2e-13 49.9 0.1 2.6e-13 49.6 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.22 gi|126179752|ref|YP_001047717.1| - 1.3e-72 244.6 0.2 1.7e-72 244.1 0.2 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|126179752|ref|YP_001047717.1| - 4.8e-33 114.1 0.0 2e-32 112.1 0.0 2.1 1 1 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|126179752|ref|YP_001047717.1| - 6.7e-09 35.6 0.0 1.3e-08 34.7 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|126179752|ref|YP_001047717.1| - 8.3e-05 21.9 0.1 0.00017 20.9 0.1 1.5 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus DUF608 PF04685.13 gi|126179752|ref|YP_001047717.1| - 0.2 10.8 0.0 0.34 10.0 0.0 1.3 1 0 0 1 1 1 0 Glycosyl-hydrolase family 116, catalytic region Ribosomal_S2 PF00318.20 gi|126179753|ref|YP_001047718.1| - 2.9e-29 101.8 1.4 4.1e-14 52.3 1.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Memo PF01875.17 gi|126179754|ref|YP_001047719.1| - 3.1e-70 236.4 0.0 3.6e-70 236.2 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|126179754|ref|YP_001047719.1| - 0.061 12.4 0.0 0.083 11.9 0.0 1.2 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase GHMP_kinases_N PF00288.26 gi|126179755|ref|YP_001047720.1| - 2e-13 50.3 0.4 2e-13 50.3 0.4 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|126179755|ref|YP_001047720.1| - 1.7e-12 47.5 1.2 4.7e-12 46.1 1.2 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|126179755|ref|YP_001047720.1| - 0.0033 16.9 0.0 0.0095 15.5 0.0 1.8 1 0 0 1 1 1 1 Galactokinase galactose-binding signature AA_kinase PF00696.28 gi|126179756|ref|YP_001047721.1| - 6e-43 147.2 3.4 6.9e-43 147.0 3.4 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.18 gi|126179757|ref|YP_001047722.1| - 3.5e-21 75.6 6.1 2.7e-14 53.0 5.6 2.1 1 1 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|126179757|ref|YP_001047722.1| - 2.8e-05 23.3 2.8 0.022 13.8 3.5 2.9 3 1 0 3 3 3 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|126179757|ref|YP_001047722.1| - 0.0001 21.5 2.6 0.00024 20.3 2.6 1.5 1 1 0 1 1 1 1 Conserved region in glutamate synthase NMO PF03060.15 gi|126179757|ref|YP_001047722.1| - 0.061 12.7 0.5 0.08 12.3 0.5 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase RMMBL PF07521.12 gi|126179758|ref|YP_001047723.1| - 1.2e-10 41.2 0.8 2.7e-10 40.0 0.1 2.0 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|126179758|ref|YP_001047723.1| - 1e-07 31.7 0.1 2.6e-07 30.3 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|126179758|ref|YP_001047723.1| - 4.1e-07 30.2 0.1 4.1e-07 30.2 0.1 2.2 3 0 0 3 3 3 1 Metallo-beta-lactamase superfamily polyprenyl_synt PF00348.17 gi|126179759|ref|YP_001047724.1| - 4.9e-63 212.6 0.1 6.7e-63 212.1 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase tRNA-synt_1c PF00749.21 gi|126179760|ref|YP_001047725.1| - 5.2e-73 245.7 0.0 7.1e-73 245.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|126179760|ref|YP_001047725.1| - 7.7e-29 100.8 0.0 1.1e-28 100.2 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_1f PF01921.18 gi|126179760|ref|YP_001047725.1| - 0.02 13.8 0.0 0.88 8.4 0.0 2.5 2 1 1 3 3 3 0 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|126179760|ref|YP_001047725.1| - 0.11 11.3 0.0 10 4.7 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (M) DUF2178 PF09946.9 gi|126179761|ref|YP_001047726.1| - 2.6e-16 59.7 0.5 8.1e-16 58.1 0.3 1.8 2 0 0 2 2 2 1 Predicted membrane protein (DUF2178) TauE PF01925.19 gi|126179761|ref|YP_001047726.1| - 0.0097 15.6 2.2 0.0097 15.6 2.2 1.6 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE TssN PF17555.2 gi|126179761|ref|YP_001047726.1| - 0.092 12.1 3.2 0.087 12.2 0.8 1.8 2 0 0 2 2 2 0 Type VI secretion system, TssN Gram_pos_anchor PF00746.21 gi|126179761|ref|YP_001047726.1| - 2.3 8.3 5.0 9.9 6.2 0.1 2.6 3 0 0 3 3 3 0 LPXTG cell wall anchor motif DUF5533 PF17685.1 gi|126179761|ref|YP_001047726.1| - 3.7 7.9 7.1 0.21 12.0 1.5 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5533) HTH_3 PF01381.22 gi|126179762|ref|YP_001047727.1| - 2.3e-15 56.4 0.0 2.6e-15 56.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|126179762|ref|YP_001047727.1| - 4.5e-10 39.4 0.0 5.2e-10 39.2 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|126179762|ref|YP_001047727.1| - 1.8e-06 28.2 0.0 2.1e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|126179762|ref|YP_001047727.1| - 0.00028 21.3 0.0 0.00031 21.1 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.16 gi|126179762|ref|YP_001047727.1| - 0.0018 17.7 0.1 0.0039 16.7 0.1 1.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_25 PF13413.6 gi|126179762|ref|YP_001047727.1| - 0.0055 16.5 0.0 0.0072 16.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|126179762|ref|YP_001047727.1| - 0.0057 16.6 0.0 0.029 14.3 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|126179762|ref|YP_001047727.1| - 0.019 14.9 0.0 0.03 14.3 0.0 1.3 1 0 0 1 1 1 0 HTH domain GP3_package PF16677.5 gi|126179762|ref|YP_001047727.1| - 0.034 14.3 0.0 0.036 14.2 0.0 1.2 1 0 0 1 1 1 0 DNA-packaging protein gp3 YdaS_antitoxin PF15943.5 gi|126179762|ref|YP_001047727.1| - 0.077 12.9 0.0 0.097 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT CARDB PF07705.11 gi|126179763|ref|YP_001047728.1| - 1.7e-09 37.9 9.2 8.5e-06 26.0 0.2 3.4 3 1 0 3 3 3 3 CARDB DUF11 PF01345.18 gi|126179763|ref|YP_001047728.1| - 2.4e-06 27.7 16.1 0.0039 17.4 1.2 3.7 3 1 0 3 3 3 3 Domain of unknown function DUF11 Transglut_C PF00927.22 gi|126179763|ref|YP_001047728.1| - 0.00015 21.9 0.0 0.42 10.8 0.0 2.6 2 0 0 2 2 2 2 Transglutaminase family, C-terminal ig like domain NPCBM_assoc PF10633.9 gi|126179763|ref|YP_001047728.1| - 0.00029 21.0 8.4 0.034 14.4 0.0 4.2 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.14 gi|126179763|ref|YP_001047728.1| - 0.00079 18.9 0.6 0.17 11.3 0.1 2.5 2 0 0 2 2 2 2 Translocon-associated protein beta (TRAPB) ABC_tran PF00005.27 gi|126179764|ref|YP_001047729.1| - 1.7e-32 112.8 0.0 2.4e-32 112.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|126179764|ref|YP_001047729.1| - 6.8e-08 32.2 0.1 0.00095 18.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|126179764|ref|YP_001047729.1| - 9.4e-07 28.9 0.2 0.0098 15.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|126179764|ref|YP_001047729.1| - 3.6e-05 23.4 0.1 6.8e-05 22.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|126179764|ref|YP_001047729.1| - 0.00017 22.0 0.0 0.00027 21.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|126179764|ref|YP_001047729.1| - 0.00021 21.2 0.0 0.00054 19.9 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 gi|126179764|ref|YP_001047729.1| - 0.00023 20.8 0.0 0.019 14.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|126179764|ref|YP_001047729.1| - 0.0027 18.0 0.1 0.01 16.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|126179764|ref|YP_001047729.1| - 0.0041 16.9 0.1 0.059 13.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|126179764|ref|YP_001047729.1| - 0.0063 16.6 0.1 0.03 14.4 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase G-alpha PF00503.20 gi|126179764|ref|YP_001047729.1| - 0.013 14.7 0.0 0.014 14.6 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_15 PF13175.6 gi|126179764|ref|YP_001047729.1| - 0.014 15.1 0.0 1.7 8.2 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain NB-ARC PF00931.22 gi|126179764|ref|YP_001047729.1| - 0.019 14.1 0.1 0.043 13.0 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.6 gi|126179764|ref|YP_001047729.1| - 0.021 14.6 0.0 0.26 11.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|126179764|ref|YP_001047729.1| - 0.022 15.3 0.1 0.047 14.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|126179764|ref|YP_001047729.1| - 0.026 14.2 0.0 0.36 10.5 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|126179764|ref|YP_001047729.1| - 0.051 13.5 0.0 0.13 12.2 0.0 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|126179764|ref|YP_001047729.1| - 0.066 13.1 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|126179764|ref|YP_001047729.1| - 0.079 13.5 0.0 0.28 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|126179764|ref|YP_001047729.1| - 0.084 13.0 0.2 0.17 12.1 0.2 1.8 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|126179764|ref|YP_001047729.1| - 0.088 12.7 0.0 1.8 8.4 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.6 gi|126179764|ref|YP_001047729.1| - 0.11 12.8 0.0 0.31 11.3 0.0 1.8 2 0 0 2 2 1 0 AAA domain MacB_PCD PF12704.7 gi|126179765|ref|YP_001047730.1| - 4.1e-23 82.8 5.9 4.1e-23 82.8 5.9 2.7 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|126179765|ref|YP_001047730.1| - 1.3e-11 44.8 15.3 4.8e-11 43.0 5.5 3.1 3 0 0 3 3 3 2 FtsX-like permease family DUF4134 PF13572.6 gi|126179765|ref|YP_001047730.1| - 0.0037 17.5 1.5 0.0037 17.5 1.5 3.8 2 1 1 4 4 4 1 Domain of unknown function (DUF4134) DUF4064 PF13273.6 gi|126179765|ref|YP_001047730.1| - 0.0058 16.9 15.8 0.055 13.8 0.3 3.4 3 0 0 3 3 3 2 Protein of unknown function (DUF4064) G0-G1_switch_2 PF15103.6 gi|126179765|ref|YP_001047730.1| - 0.11 12.9 0.3 0.11 12.9 0.3 2.6 2 0 0 2 2 2 0 G0/G1 switch protein 2 PrgH PF09480.10 gi|126179765|ref|YP_001047730.1| - 0.11 11.8 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Type III secretion system protein PrgH-EprH (PrgH) EI24 PF07264.11 gi|126179765|ref|YP_001047730.1| - 0.48 10.7 4.6 0.11 12.8 0.7 1.8 2 0 0 2 2 2 0 Etoposide-induced protein 2.4 (EI24) MARVEL PF01284.23 gi|126179765|ref|YP_001047730.1| - 0.62 10.1 0.0 0.62 10.1 0.0 2.9 3 0 0 3 3 3 0 Membrane-associating domain Clc-like PF07062.12 gi|126179765|ref|YP_001047730.1| - 0.65 9.4 7.9 0.047 13.2 2.7 1.7 2 0 0 2 2 2 0 Clc-like TPR_1 PF00515.28 gi|126179766|ref|YP_001047731.1| - 3.5e-34 115.2 0.0 1.4e-07 31.0 0.0 4.2 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|126179766|ref|YP_001047731.1| - 6.3e-34 113.3 0.2 8.1e-09 34.9 0.0 4.7 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|126179766|ref|YP_001047731.1| - 4.5e-23 79.5 0.0 1.6e-05 24.7 0.0 4.5 5 0 0 5 5 4 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|126179766|ref|YP_001047731.1| - 1.1e-22 79.5 0.0 1.3e-07 31.2 0.1 4.3 2 1 2 4 4 4 4 TPR repeat TPR_9 PF13371.6 gi|126179766|ref|YP_001047731.1| - 2.8e-20 72.2 11.0 1.9e-11 43.9 1.0 3.1 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|126179766|ref|YP_001047731.1| - 5.5e-20 70.4 13.9 4.8e-08 33.2 1.7 5.2 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|126179766|ref|YP_001047731.1| - 1.3e-16 59.7 0.0 1.3e-05 25.3 0.0 4.2 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|126179766|ref|YP_001047731.1| - 1.1e-15 57.9 2.4 4.5e-08 33.5 0.3 3.9 2 1 1 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|126179766|ref|YP_001047731.1| - 2.2e-13 49.2 0.9 0.021 14.8 0.1 4.6 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|126179766|ref|YP_001047731.1| - 2.4e-13 50.5 15.8 1.8e-10 41.3 2.4 4.1 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|126179766|ref|YP_001047731.1| - 9.2e-13 48.3 5.2 1.7e-06 28.2 0.3 3.5 2 1 1 3 3 3 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|126179766|ref|YP_001047731.1| - 1.6e-06 28.1 0.0 1.1 9.3 0.0 3.8 4 0 0 4 4 4 2 Fis1 C-terminal tetratricopeptide repeat TPR_4 PF07721.14 gi|126179766|ref|YP_001047731.1| - 8.5e-05 22.8 6.1 0.4 11.5 0.2 5.0 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|126179766|ref|YP_001047731.1| - 0.00011 22.7 1.7 1.1 10.1 0.1 4.6 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|126179766|ref|YP_001047731.1| - 0.00017 21.3 7.4 0.91 9.5 0.3 4.6 5 0 0 5 5 4 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|126179766|ref|YP_001047731.1| - 0.00023 21.3 0.2 0.0012 19.1 0.3 2.0 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|126179766|ref|YP_001047731.1| - 0.00045 19.2 0.0 0.0078 15.2 0.0 2.1 1 1 1 2 2 2 1 NMDA receptor-regulated protein 1 TPR_15 PF13429.6 gi|126179766|ref|YP_001047731.1| - 0.0012 18.2 0.2 0.12 11.5 0.0 2.7 2 1 3 5 5 5 3 Tetratricopeptide repeat NRBF2_MIT PF17169.4 gi|126179766|ref|YP_001047731.1| - 0.052 13.8 4.1 2.8 8.2 0.1 3.8 2 1 1 3 3 3 0 MIT domain of nuclear receptor-binding factor 2 BPS PF08947.10 gi|126179766|ref|YP_001047731.1| - 0.07 13.0 2.7 25 4.8 0.0 4.2 5 0 0 5 5 5 0 BPS (Between PH and SH2) DUF3856 PF12968.7 gi|126179766|ref|YP_001047731.1| - 0.16 12.1 0.3 12 5.9 0.1 3.2 1 1 1 2 2 2 0 Domain of Unknown Function (DUF3856) LAL_C2 PF18603.1 gi|126179766|ref|YP_001047731.1| - 0.76 10.0 4.5 18 5.5 0.0 3.0 3 0 0 3 3 3 0 L-amino acid ligase C-terminal domain 2 SHNi-TPR PF10516.9 gi|126179766|ref|YP_001047731.1| - 0.93 9.0 3.0 12 5.5 0.0 3.0 4 0 0 4 4 4 0 SHNi-TPR Flavodoxin_5 PF12724.7 gi|126179767|ref|YP_001047732.1| - 9.4e-35 120.0 0.0 1.1e-34 119.8 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|126179767|ref|YP_001047732.1| - 4.5e-05 23.7 0.0 5.8e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin SBP_bac_5 PF00496.22 gi|126179767|ref|YP_001047732.1| - 0.039 12.9 0.0 0.048 12.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle Flavodoxin_3 PF12641.7 gi|126179767|ref|YP_001047732.1| - 0.21 11.3 0.0 0.29 10.8 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin domain Lactamase_B PF00753.27 gi|126179768|ref|YP_001047733.1| - 4.1e-10 40.0 2.0 2.4e-09 37.5 2.0 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily ACT PF01842.25 gi|126179768|ref|YP_001047733.1| - 3.2e-09 36.4 0.0 0.001 18.8 0.0 2.7 2 0 0 2 2 2 2 ACT domain Thr_dehydrat_C PF00585.18 gi|126179768|ref|YP_001047733.1| - 0.00019 21.1 0.0 0.12 12.1 0.0 2.5 2 0 0 2 2 2 2 C-terminal regulatory domain of Threonine dehydratase ACT_4 PF13291.6 gi|126179768|ref|YP_001047733.1| - 0.0037 17.8 0.0 0.066 13.8 0.0 2.4 2 0 0 2 2 2 1 ACT domain Lactamase_B_2 PF12706.7 gi|126179768|ref|YP_001047733.1| - 0.01 15.3 0.0 0.021 14.3 0.0 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Med25_VWA PF11265.8 gi|126179768|ref|YP_001047733.1| - 0.055 13.3 0.0 0.088 12.6 0.0 1.2 1 0 0 1 1 1 0 Mediator complex subunit 25 von Willebrand factor type A AA_permease_2 PF13520.6 gi|126179769|ref|YP_001047734.1| - 1.1e-46 159.6 44.7 1.3e-46 159.3 44.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|126179769|ref|YP_001047734.1| - 3.6e-27 95.1 47.0 7.2e-27 94.1 46.8 1.5 1 1 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 gi|126179769|ref|YP_001047734.1| - 0.0021 18.1 0.2 0.0021 18.1 0.2 4.7 4 0 0 4 4 4 1 C-terminus of AA_permease Hemerythrin PF01814.23 gi|126179770|ref|YP_001047735.1| - 8.1e-18 65.3 7.1 1.8e-13 51.2 1.4 1.4 1 1 1 2 2 2 2 Hemerythrin HHE cation binding domain Haem_bd PF14376.6 gi|126179770|ref|YP_001047735.1| - 0.021 14.7 0.8 0.021 14.7 0.8 1.8 2 0 0 2 2 2 0 Haem-binding domain AAA_6 PF12774.7 gi|126179770|ref|YP_001047735.1| - 0.028 13.4 0.7 0.036 13.0 0.7 1.1 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region MSP7_C PF12948.7 gi|126179770|ref|YP_001047735.1| - 0.16 12.6 3.1 0.26 11.9 0.3 2.0 1 1 1 2 2 2 0 MSP7-like protein C-terminal domain DUF883 PF05957.13 gi|126179770|ref|YP_001047735.1| - 0.18 12.4 0.8 4 8.1 0.0 2.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Caps_synth_GfcC PF06251.11 gi|126179770|ref|YP_001047735.1| - 0.22 11.1 3.9 0.25 11.0 0.2 2.2 2 1 0 2 2 2 0 Capsule biosynthesis GfcC Hemerythrin PF01814.23 gi|126179771|ref|YP_001047736.1| - 2.1e-11 44.6 9.7 3e-11 44.0 9.7 1.3 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain FCD PF07729.12 gi|126179771|ref|YP_001047736.1| - 0.63 10.5 9.7 2.7 8.4 1.2 3.0 1 1 2 3 3 3 0 FCD domain Molybdopterin PF00384.22 gi|126179772|ref|YP_001047737.1| - 2.3e-08 33.4 0.0 1.2e-05 24.5 0.0 2.2 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|126179772|ref|YP_001047737.1| - 4.5e-05 23.5 0.0 8.4e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain SMC_ScpA PF02616.14 gi|126179773|ref|YP_001047738.1| - 5.8e-15 55.8 0.1 1.9e-12 47.6 0.0 2.4 2 1 0 2 2 2 2 Segregation and condensation protein ScpA YL1 PF05764.13 gi|126179773|ref|YP_001047738.1| - 0.0011 19.2 0.7 0.0013 18.9 0.7 1.1 1 0 0 1 1 1 1 YL1 nuclear protein VWA_CoxE PF05762.14 gi|126179773|ref|YP_001047738.1| - 0.0079 15.6 0.1 0.013 14.9 0.1 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein SMC_N PF02463.19 gi|126179774|ref|YP_001047739.1| - 2.4e-59 200.5 0.2 3.4e-59 199.9 0.2 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|126179774|ref|YP_001047739.1| - 5.4e-27 94.4 0.0 1.6e-26 92.9 0.0 1.9 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_15 PF13175.6 gi|126179774|ref|YP_001047739.1| - 5.5e-15 56.0 1.7 2.7e-13 50.4 0.0 3.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|126179774|ref|YP_001047739.1| - 2.5e-13 51.0 7.9 2.5e-13 51.0 7.9 5.5 2 2 1 3 3 1 1 AAA domain AAA_21 PF13304.6 gi|126179774|ref|YP_001047739.1| - 3e-07 30.5 6.5 0.00011 22.2 0.2 3.1 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|126179774|ref|YP_001047739.1| - 1.2e-06 28.1 0.0 2.5e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain GAS PF13851.6 gi|126179774|ref|YP_001047739.1| - 0.0034 16.8 7.8 0.0034 16.8 7.8 6.4 3 2 2 6 6 6 1 Growth-arrest specific micro-tubule binding ABC_tran PF00005.27 gi|126179774|ref|YP_001047739.1| - 0.015 15.8 13.1 0.82 10.2 0.0 5.1 3 2 0 3 3 3 0 ABC transporter YojJ PF10372.9 gi|126179774|ref|YP_001047739.1| - 0.11 12.6 10.2 3.2 7.9 0.1 4.9 3 2 2 5 5 5 0 Bacterial membrane-spanning protein N-terminus DUF1664 PF07889.12 gi|126179774|ref|YP_001047739.1| - 0.85 9.7 46.7 0.051 13.6 1.1 7.7 4 3 4 8 8 8 0 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|126179774|ref|YP_001047739.1| - 1.1 9.3 18.5 0.8 9.7 0.2 6.0 3 2 2 6 6 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus COG5 PF10392.9 gi|126179774|ref|YP_001047739.1| - 4 7.6 29.7 0.45 10.7 2.4 5.0 2 2 2 4 4 4 0 Golgi transport complex subunit 5 PKcGMP_CC PF16808.5 gi|126179775|ref|YP_001047740.1| - 0.00033 20.4 14.0 0.027 14.3 4.5 2.5 2 0 0 2 2 2 2 Coiled-coil N-terminus of cGMP-dependent protein kinase TMCO5 PF14992.6 gi|126179775|ref|YP_001047740.1| - 0.054 13.1 3.6 0.069 12.7 3.6 1.1 1 0 0 1 1 1 0 TMCO5 family CCDC53 PF10152.9 gi|126179775|ref|YP_001047740.1| - 0.17 12.3 1.8 0.33 11.4 1.8 1.5 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex FliT PF05400.13 gi|126179775|ref|YP_001047740.1| - 0.23 12.3 5.9 0.53 11.1 5.9 1.6 1 0 0 1 1 1 0 Flagellar protein FliT bZIP_1 PF00170.21 gi|126179775|ref|YP_001047740.1| - 1.1 9.4 6.8 4.5 7.4 0.2 2.3 2 0 0 2 2 2 0 bZIP transcription factor DivIC PF04977.15 gi|126179775|ref|YP_001047740.1| - 2.1 8.2 4.3 7.3 6.4 0.3 2.3 2 0 0 2 2 2 0 Septum formation initiator DUF3375 PF11855.8 gi|126179775|ref|YP_001047740.1| - 2.7 6.8 13.4 0.95 8.3 2.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3375) DMPK_coil PF08826.10 gi|126179775|ref|YP_001047740.1| - 3.1 8.0 8.7 1.1 9.4 0.2 2.4 2 0 0 2 2 2 0 DMPK coiled coil domain like SHMT PF00464.19 gi|126179776|ref|YP_001047741.1| - 9.8e-157 521.6 0.2 1.2e-156 521.3 0.2 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase GMC_oxred_C PF05199.13 gi|126179776|ref|YP_001047741.1| - 0.069 13.7 0.8 12 6.5 0.0 2.9 3 0 0 3 3 3 0 GMC oxidoreductase THF_DHG_CYH_C PF02882.19 gi|126179777|ref|YP_001047742.1| - 7.4e-71 236.6 0.1 1e-70 236.2 0.1 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|126179777|ref|YP_001047742.1| - 4.6e-36 123.6 0.0 6.8e-36 123.1 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Pterin_bind PF00809.22 gi|126179778|ref|YP_001047743.1| - 1.5e-44 152.5 0.0 1.8e-44 152.2 0.0 1.1 1 0 0 1 1 1 1 Pterin binding enzyme AP_endonuc_2 PF01261.24 gi|126179778|ref|YP_001047743.1| - 0.0011 18.5 0.1 0.005 16.3 0.1 1.9 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Sacchrp_dh_NADP PF03435.18 gi|126179778|ref|YP_001047743.1| - 0.0024 18.1 0.0 0.0056 16.9 0.0 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_ligase PF01996.16 gi|126179779|ref|YP_001047744.1| - 7.9e-62 208.8 0.0 9.2e-62 208.6 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase CofC PF01983.16 gi|126179780|ref|YP_001047745.1| - 8.2e-50 169.0 0.0 9.6e-50 168.8 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|126179780|ref|YP_001047745.1| - 0.0084 16.5 0.0 0.043 14.2 0.0 2.0 1 1 0 1 1 1 1 MobA-like NTP transferase domain BRCC36_C PF18110.1 gi|126179780|ref|YP_001047745.1| - 0.16 12.2 0.0 0.24 11.6 0.0 1.3 1 0 0 1 1 1 0 BRCC36 C-terminal helical domain Radical_SAM PF04055.21 gi|126179781|ref|YP_001047746.1| - 9.9e-14 52.1 0.1 1.6e-13 51.4 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SAICAR_synt PF01259.18 gi|126179782|ref|YP_001047747.1| - 5.8e-61 206.3 0.0 7.3e-61 206.0 0.0 1.1 1 0 0 1 1 1 1 SAICAR synthetase PurS PF02700.14 gi|126179783|ref|YP_001047748.1| - 7.7e-22 77.3 0.0 8.6e-22 77.1 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.6 gi|126179784|ref|YP_001047749.1| - 7.7e-15 54.7 0.0 3.8e-13 49.1 0.0 2.0 1 1 1 2 2 2 2 CobB/CobQ-like glutamine amidotransferase domain FeThRed_B PF02943.15 gi|126179785|ref|YP_001047750.1| - 8.5e-24 83.6 0.9 9.2e-24 83.5 0.9 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain ABC1 PF03109.16 gi|126179786|ref|YP_001047751.1| - 1.5e-33 115.5 0.0 3e-33 114.5 0.0 1.5 1 0 0 1 1 1 1 ABC1 family APH PF01636.23 gi|126179786|ref|YP_001047751.1| - 0.0011 19.0 0.7 0.1 12.5 0.2 2.6 2 0 0 2 2 2 2 Phosphotransferase enzyme family MFS_1 PF07690.16 gi|126179787|ref|YP_001047752.1| - 3.7e-29 101.7 92.2 4.3e-24 85.1 51.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|126179787|ref|YP_001047752.1| - 2.2 7.1 36.4 0.022 13.6 18.7 2.1 2 0 0 2 2 2 0 Sugar (and other) transporter PrmA PF06325.13 gi|126179788|ref|YP_001047753.1| - 1.6e-15 57.3 0.3 2.1e-15 56.9 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|126179788|ref|YP_001047753.1| - 7.5e-15 54.9 0.0 1.1e-14 54.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|126179788|ref|YP_001047753.1| - 3.7e-13 49.5 0.0 4.7e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126179788|ref|YP_001047753.1| - 5.6e-13 49.4 0.1 9.9e-13 48.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126179788|ref|YP_001047753.1| - 1.9e-09 38.0 0.9 2.5e-09 37.7 0.1 1.6 2 0 0 2 2 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|126179788|ref|YP_001047753.1| - 1.5e-08 34.6 0.9 6.7e-08 32.5 0.9 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|126179788|ref|YP_001047753.1| - 6.9e-07 29.1 0.0 9.8e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|126179788|ref|YP_001047753.1| - 6.3e-06 26.1 0.0 7.4e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126179788|ref|YP_001047753.1| - 3.1e-05 24.6 0.0 6.4e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|126179788|ref|YP_001047753.1| - 0.0001 21.6 0.0 0.00013 21.3 0.0 1.1 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain Met_10 PF02475.16 gi|126179788|ref|YP_001047753.1| - 0.00024 20.9 0.0 0.00035 20.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_32 PF13679.6 gi|126179788|ref|YP_001047753.1| - 0.00051 20.1 0.0 0.00066 19.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|126179788|ref|YP_001047753.1| - 0.00075 19.1 0.0 0.001 18.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase AviRa PF11599.8 gi|126179788|ref|YP_001047753.1| - 0.001 18.6 0.3 0.0026 17.3 0.2 1.6 1 1 1 2 2 2 1 RRNA methyltransferase AviRa FmrO PF07091.11 gi|126179788|ref|YP_001047753.1| - 0.0032 17.1 0.3 0.0046 16.6 0.3 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) N6_Mtase PF02384.16 gi|126179788|ref|YP_001047753.1| - 0.0035 16.7 0.0 0.0048 16.2 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase PCMT PF01135.19 gi|126179788|ref|YP_001047753.1| - 0.11 12.2 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|126179788|ref|YP_001047753.1| - 0.16 11.9 0.1 0.23 11.4 0.1 1.2 1 0 0 1 1 1 0 Methyltransferase domain Diphthamide_syn PF01866.17 gi|126179789|ref|YP_001047754.1| - 1.1e-71 241.8 0.0 1.3e-71 241.6 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Pribosyltran PF00156.27 gi|126179790|ref|YP_001047755.1| - 7.9e-15 54.7 0.8 9.3e-15 54.5 0.8 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|126179790|ref|YP_001047755.1| - 0.0046 16.4 0.1 0.0066 15.9 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|126179790|ref|YP_001047755.1| - 0.012 15.1 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase Pyridoxal_deC PF00282.19 gi|126179791|ref|YP_001047756.1| - 8.1e-27 93.9 0.0 1.5e-26 93.0 0.0 1.3 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|126179791|ref|YP_001047756.1| - 2.3e-09 36.7 0.0 1.1e-07 31.2 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|126179791|ref|YP_001047756.1| - 4.8e-05 22.7 0.0 0.00014 21.1 0.0 1.7 1 1 0 2 2 2 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|126179791|ref|YP_001047756.1| - 0.023 14.0 0.0 0.033 13.5 0.0 1.1 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family PPDK_N PF01326.19 gi|126179792|ref|YP_001047757.1| - 7.2e-103 344.3 0.0 1e-102 343.8 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|126179792|ref|YP_001047757.1| - 1.5e-83 280.4 0.0 2.2e-83 279.8 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|126179792|ref|YP_001047757.1| - 6.3e-28 96.3 1.5 2.8e-27 94.2 1.5 2.2 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.13 gi|126179792|ref|YP_001047757.1| - 0.04 14.1 0.8 2.8 8.1 0.0 2.7 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal 2-Hacid_dh_C PF02826.19 gi|126179793|ref|YP_001047758.1| - 1.9e-66 222.8 0.1 3e-66 222.2 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|126179793|ref|YP_001047758.1| - 2e-37 127.9 1.6 2.6e-37 127.5 0.4 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|126179793|ref|YP_001047758.1| - 5.4e-11 42.1 0.4 2.1e-10 40.2 0.1 2.2 3 0 0 3 3 3 1 ACT domain IlvN PF07991.12 gi|126179793|ref|YP_001047758.1| - 0.0035 16.9 0.0 0.0083 15.7 0.0 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|126179793|ref|YP_001047758.1| - 0.016 15.3 0.8 0.12 12.6 0.2 2.4 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Gp_dh_N PF00044.24 gi|126179793|ref|YP_001047758.1| - 0.022 15.1 0.0 0.063 13.6 0.0 1.9 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain tRNA_m1G_MT PF01746.21 gi|126179793|ref|YP_001047758.1| - 0.057 13.1 0.0 0.68 9.6 0.0 2.1 2 0 0 2 2 2 0 tRNA (Guanine-1)-methyltransferase UDPG_MGDP_dh_C PF03720.15 gi|126179793|ref|YP_001047758.1| - 0.16 12.4 0.1 0.77 10.2 0.0 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HNH_3 PF13392.6 gi|126179794|ref|YP_001047759.1| - 0.00032 20.4 1.6 0.00046 19.9 1.6 1.3 1 0 0 1 1 1 1 HNH endonuclease Cytochrome_C7 PF14522.6 gi|126179794|ref|YP_001047759.1| - 0.001 19.1 2.0 0.0013 18.6 2.0 1.2 1 0 0 1 1 1 1 Cytochrome c7 and related cytochrome c Cytochrom_c3_2 PF14537.6 gi|126179794|ref|YP_001047759.1| - 0.012 16.0 3.3 0.015 15.7 3.3 1.2 1 0 0 1 1 1 0 Cytochrome c3 DZR PF12773.7 gi|126179794|ref|YP_001047759.1| - 0.015 15.3 1.1 0.024 14.7 1.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon HNH PF01844.23 gi|126179794|ref|YP_001047759.1| - 0.017 15.3 2.0 0.017 15.3 2.0 2.3 2 0 0 2 2 2 0 HNH endonuclease MCR PF18509.1 gi|126179794|ref|YP_001047759.1| - 6.5 6.4 8.2 2.8 7.6 1.7 2.3 2 0 0 2 2 2 0 Magnetochrome domain DUF3331 PF11811.8 gi|126179795|ref|YP_001047760.1| - 0.021 14.6 0.0 0.024 14.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3331) RHH_6 PF16762.5 gi|126179796|ref|YP_001047761.1| - 0.027 15.1 0.1 0.035 14.7 0.1 1.1 1 0 0 1 1 1 0 Ribbon-helix-helix domain PIN PF01850.21 gi|126179797|ref|YP_001047762.1| - 1.3e-12 48.3 0.0 1.6e-12 48.0 0.0 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|126179797|ref|YP_001047762.1| - 0.0021 18.8 0.0 0.0029 18.3 0.0 1.2 1 0 0 1 1 1 1 PIN domain AHSA1 PF08327.11 gi|126179798|ref|YP_001047763.1| - 5.2e-24 84.9 0.1 6.4e-24 84.6 0.1 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.9 gi|126179798|ref|YP_001047763.1| - 0.1 12.8 0.2 0.25 11.6 0.2 1.7 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport Acyl_transf_3 PF01757.22 gi|126179799|ref|YP_001047764.1| - 6.7e-38 130.6 36.2 8e-38 130.4 36.2 1.0 1 0 0 1 1 1 1 Acyltransferase family DUF1624 PF07786.12 gi|126179799|ref|YP_001047764.1| - 2.3e-06 27.3 11.1 2.3e-06 27.3 11.1 2.3 1 1 0 2 2 2 1 Protein of unknown function (DUF1624) DUF2583 PF10762.9 gi|126179799|ref|YP_001047764.1| - 0.19 12.2 3.3 3.1 8.3 0.5 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2583) DUF296 PF03479.15 gi|126179800|ref|YP_001047765.1| - 1.2e-15 57.8 0.0 1.4e-15 57.6 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain Radical_SAM_N PF08497.10 gi|126179801|ref|YP_001047766.1| - 2.7e-124 414.3 0.0 3.8e-124 413.8 0.0 1.2 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.8 gi|126179801|ref|YP_001047766.1| - 2.2e-29 102.7 0.0 9.6e-29 100.6 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.21 gi|126179801|ref|YP_001047766.1| - 2.9e-17 63.5 0.2 6.7e-17 62.4 0.2 1.6 1 0 0 1 1 1 1 Radical SAM superfamily HNH PF01844.23 gi|126179802|ref|YP_001047767.1| - 4.1e-05 23.7 0.9 6.2e-05 23.1 0.9 1.5 1 1 0 1 1 1 1 HNH endonuclease HNH_5 PF14279.6 gi|126179802|ref|YP_001047767.1| - 0.00033 20.5 0.3 0.00046 20.0 0.3 1.3 1 0 0 1 1 1 1 HNH endonuclease Zn-ribbon_8 PF09723.10 gi|126179802|ref|YP_001047767.1| - 0.028 14.5 0.8 0.5 10.5 0.2 2.3 2 1 0 2 2 2 0 Zinc ribbon domain Paired_CXXCH_1 PF09699.10 gi|126179802|ref|YP_001047767.1| - 0.043 13.6 2.1 0.92 9.3 0.2 2.3 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) Endonuclease_7 PF02945.15 gi|126179802|ref|YP_001047767.1| - 0.13 12.2 3.9 0.9 9.5 2.8 2.0 1 1 1 2 2 2 0 Recombination endonuclease VII MF_alpha_N PF05436.11 gi|126179803|ref|YP_001047768.1| - 0.09 12.7 0.1 1 9.3 0.0 2.1 2 0 0 2 2 2 0 Mating factor alpha precursor N-terminus AIM24 PF01987.17 gi|126179804|ref|YP_001047769.1| - 2.1e-66 223.6 3.5 2.3e-66 223.4 3.5 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 DUF2117 PF09890.9 gi|126179805|ref|YP_001047770.1| - 3.5e-41 141.0 0.0 5.1e-41 140.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) Paramyxo_P_V_N PF13825.6 gi|126179805|ref|YP_001047770.1| - 0.3 10.5 0.2 0.43 10.0 0.2 1.2 1 0 0 1 1 1 0 Paramyxovirus structural protein V/P N-terminus Nre_N PF04894.12 gi|126179806|ref|YP_001047771.1| - 4.4e-86 289.1 0.0 5.4e-86 288.8 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|126179806|ref|YP_001047771.1| - 6e-34 116.3 0.1 1e-33 115.5 0.1 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal DNA_ligase_A_M PF01068.21 gi|126179808|ref|YP_001047773.1| - 6.5e-50 169.6 0.0 1.1e-49 168.9 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|126179808|ref|YP_001047773.1| - 3.7e-30 105.5 0.0 8.5e-29 101.1 0.0 2.4 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|126179808|ref|YP_001047773.1| - 1.7e-20 73.4 0.0 4e-20 72.3 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|126179808|ref|YP_001047773.1| - 6e-06 26.7 0.0 1.2e-05 25.7 0.0 1.6 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|126179808|ref|YP_001047773.1| - 0.084 12.9 1.3 0.82 9.7 1.3 2.5 1 1 0 1 1 1 0 DNA ligase OB-like domain SH3_15 PF18346.1 gi|126179808|ref|YP_001047773.1| - 0.099 13.0 0.1 19 5.6 0.0 3.0 2 1 0 2 2 2 0 Mind bomb SH3 repeat domain mRNA_cap_enzyme PF01331.19 gi|126179808|ref|YP_001047773.1| - 0.13 12.0 0.0 0.52 10.1 0.0 1.9 2 1 0 2 2 2 0 mRNA capping enzyme, catalytic domain SdrD_B PF17210.3 gi|126179810|ref|YP_001047775.1| - 1.1e-22 80.4 0.0 1.2e-22 80.3 0.0 1.0 1 0 0 1 1 1 1 SdrD B-like domain CarboxypepD_reg PF13620.6 gi|126179810|ref|YP_001047775.1| - 1.8e-05 24.9 0.6 3.4e-05 24.0 0.6 1.5 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain SpaA PF17802.1 gi|126179810|ref|YP_001047775.1| - 0.11 12.9 0.8 0.18 12.1 0.0 1.7 2 0 0 2 2 2 0 Prealbumin-like fold domain SdrD_B PF17210.3 gi|126179811|ref|YP_001047776.1| - 1.8e-26 92.6 2.8 3.9e-12 46.4 0.0 3.0 3 0 0 3 3 3 2 SdrD B-like domain CarboxypepD_reg PF13620.6 gi|126179811|ref|YP_001047776.1| - 0.00016 21.9 0.4 0.22 11.8 0.0 3.4 2 1 0 2 2 2 2 Carboxypeptidase regulatory-like domain DUF5122 PF17164.4 gi|126179811|ref|YP_001047776.1| - 0.019 15.2 11.8 0.097 13.0 0.1 5.5 5 0 0 5 5 5 0 Domain of unknown function (DUF5122) beta-propeller DUF5597 PF18120.1 gi|126179811|ref|YP_001047776.1| - 0.14 12.3 3.9 1.4e+02 2.5 0.0 5.0 2 2 3 6 6 6 0 Domain of unknown function (DUF5597) DJ-1_PfpI PF01965.24 gi|126179812|ref|YP_001047777.1| - 2.4e-40 138.1 0.2 2.6e-40 137.9 0.2 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family Catalase_C PF18011.1 gi|126179812|ref|YP_001047777.1| - 0.056 13.1 0.0 0.075 12.7 0.0 1.2 1 0 0 1 1 1 0 C-terminal domain found in long catalases ThiJ_like PF17124.5 gi|126179812|ref|YP_001047777.1| - 0.2 11.3 0.0 3.1 7.4 0.0 2.0 1 1 1 2 2 2 0 ThiJ/PfpI family-like Glycos_transf_2 PF00535.26 gi|126179813|ref|YP_001047778.1| - 2e-15 57.0 0.0 2.5e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|126179813|ref|YP_001047778.1| - 4.4e-08 33.3 0.0 2e-06 27.8 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 HD PF01966.22 gi|126179814|ref|YP_001047779.1| - 2.6e-10 40.6 0.1 5.8e-10 39.4 0.1 1.6 1 0 0 1 1 1 1 HD domain tRNA_anti-codon PF01336.25 gi|126179814|ref|YP_001047779.1| - 2.9e-07 30.4 0.0 5.6e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain HD_6 PF18019.1 gi|126179814|ref|YP_001047779.1| - 2.9e-05 24.3 1.0 5.7e-05 23.3 1.0 1.5 1 1 0 1 1 1 1 HD domain TraI_2 PF07514.11 gi|126179814|ref|YP_001047779.1| - 0.00015 20.8 3.9 0.00056 18.9 3.9 1.8 1 1 0 1 1 1 1 Putative helicase HDOD PF08668.12 gi|126179814|ref|YP_001047779.1| - 0.0013 18.2 0.1 0.002 17.6 0.1 1.3 1 0 0 1 1 1 1 HDOD domain YHS PF04945.13 gi|126179815|ref|YP_001047780.1| - 1.7e-19 69.6 1.8 2e-19 69.4 1.8 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|126179815|ref|YP_001047780.1| - 0.0014 18.9 0.1 0.0019 18.5 0.1 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain ATPase-cat_bd PF12156.8 gi|126179815|ref|YP_001047780.1| - 0.0032 18.2 0.0 0.0034 18.1 0.0 1.1 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase E1-E2_ATPase PF00122.20 gi|126179816|ref|YP_001047781.1| - 1.6e-56 190.7 14.8 2.1e-56 190.3 2.8 3.1 3 0 0 3 3 3 2 E1-E2 ATPase Hydrolase PF00702.26 gi|126179816|ref|YP_001047781.1| - 1.7e-49 168.9 8.9 1.9e-49 168.8 7.4 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|126179816|ref|YP_001047781.1| - 1.9e-35 121.1 0.1 8.7e-18 64.5 0.0 2.8 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|126179816|ref|YP_001047781.1| - 0.00012 21.9 1.0 0.0048 16.7 0.2 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|126179816|ref|YP_001047781.1| - 0.0011 19.4 0.2 0.022 15.2 0.1 3.0 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Glyco_hydro_57 PF03065.15 gi|126179816|ref|YP_001047781.1| - 0.014 14.6 0.0 0.024 13.9 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 57 Hydrolase_6 PF13344.6 gi|126179816|ref|YP_001047781.1| - 0.057 13.5 0.3 1.6 8.9 0.0 2.8 2 1 1 3 3 3 0 Haloacid dehalogenase-like hydrolase PCB_OB PF17092.5 gi|126179816|ref|YP_001047781.1| - 0.61 10.9 5.3 5.3 7.8 0.1 3.5 3 0 0 3 3 3 0 Penicillin-binding protein OB-like domain Spore_YhcN_YlaJ PF09580.10 gi|126179816|ref|YP_001047781.1| - 0.64 10.1 7.8 6.9 6.7 0.1 3.2 3 1 1 4 4 4 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) HEAT_2 PF13646.6 gi|126179817|ref|YP_001047782.1| - 2.1e-17 63.3 2.1 8.9e-11 42.0 0.2 2.3 2 0 0 2 2 2 2 HEAT repeats HEAT PF02985.22 gi|126179817|ref|YP_001047782.1| - 7.9e-09 35.0 1.4 0.079 13.3 0.0 3.8 4 0 0 4 4 4 3 HEAT repeat HEAT_PBS PF03130.16 gi|126179817|ref|YP_001047782.1| - 1e-06 28.9 11.9 0.031 14.9 0.6 4.7 5 0 0 5 5 5 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|126179817|ref|YP_001047782.1| - 0.00018 21.9 2.9 0.95 10.0 0.0 3.9 3 1 0 3 3 3 2 HEAT-like repeat Arm PF00514.23 gi|126179817|ref|YP_001047782.1| - 0.0037 17.3 0.2 0.46 10.6 0.0 3.1 2 1 1 3 3 3 1 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|126179817|ref|YP_001047782.1| - 0.078 13.0 0.0 14 5.7 0.0 2.7 2 1 0 2 2 2 0 non-SMC mitotic condensation complex subunit 1 HEAT_2 PF13646.6 gi|126179818|ref|YP_001047783.1| - 7.6e-40 135.2 15.1 1.6e-11 44.5 0.2 4.1 2 1 2 4 4 4 4 HEAT repeats HEAT_PBS PF03130.16 gi|126179818|ref|YP_001047783.1| - 7.3e-23 78.9 31.7 0.00021 21.7 1.1 8.2 8 1 1 9 9 9 6 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|126179818|ref|YP_001047783.1| - 1.1e-19 68.8 2.4 0.028 14.6 0.0 6.9 6 1 1 7 7 7 5 HEAT repeat HEAT_EZ PF13513.6 gi|126179818|ref|YP_001047783.1| - 2.1e-16 60.0 16.4 0.0032 18.0 0.0 6.9 6 1 1 7 7 7 6 HEAT-like repeat Arm PF00514.23 gi|126179818|ref|YP_001047783.1| - 8.7e-16 57.4 4.7 0.16 12.0 0.0 7.4 6 2 2 8 8 8 4 Armadillo/beta-catenin-like repeat Aconitase_B_N PF11791.8 gi|126179818|ref|YP_001047783.1| - 4.4e-07 30.1 0.2 0.011 15.8 0.0 3.9 3 1 1 4 4 4 2 Aconitate B N-terminal domain Cnd1 PF12717.7 gi|126179818|ref|YP_001047783.1| - 6.6e-07 29.5 0.1 2.5 8.1 0.0 5.1 3 2 2 5 5 5 2 non-SMC mitotic condensation complex subunit 1 Vac14_Fab1_bd PF12755.7 gi|126179818|ref|YP_001047783.1| - 0.0091 16.6 0.0 1.5 9.4 0.0 3.2 2 1 2 4 4 4 1 Vacuolar 14 Fab1-binding region Esterase_phd PF10503.9 gi|126179818|ref|YP_001047783.1| - 0.037 13.5 6.8 0.26 10.7 4.0 2.3 2 0 0 2 2 2 0 Esterase PHB depolymerase Histidinol_dh PF00815.20 gi|126179819|ref|YP_001047784.1| - 1.8e-161 537.8 1.0 2.1e-161 537.5 1.0 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase PBP_like_2 PF12849.7 gi|126179820|ref|YP_001047785.1| - 1.2e-28 100.7 0.4 1.5e-28 100.3 0.4 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|126179820|ref|YP_001047785.1| - 4e-07 30.0 0.0 5.8e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|126179820|ref|YP_001047785.1| - 0.061 12.7 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 LysR substrate binding domain BPD_transp_1 PF00528.22 gi|126179821|ref|YP_001047786.1| - 1.2e-10 41.4 23.2 1.2e-10 41.4 23.2 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF2985 PF11204.8 gi|126179821|ref|YP_001047786.1| - 0.48 10.6 3.9 3.1 8.0 0.9 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2985) PsbN PF02468.15 gi|126179821|ref|YP_001047786.1| - 8.7 6.3 6.2 18 5.3 0.1 3.5 2 2 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) ABC_tran PF00005.27 gi|126179822|ref|YP_001047787.1| - 5.3e-29 101.5 0.0 1.5e-28 100.0 0.0 1.7 2 0 0 2 2 2 1 ABC transporter TOBE PF03459.17 gi|126179822|ref|YP_001047787.1| - 8.9e-13 48.3 0.3 8.9e-13 48.3 0.3 2.5 4 0 0 4 4 3 1 TOBE domain AAA_21 PF13304.6 gi|126179822|ref|YP_001047787.1| - 3.3e-11 43.6 1.2 0.00015 21.7 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|126179822|ref|YP_001047787.1| - 1.9e-05 25.0 0.0 8.8e-05 22.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain TOBE_2 PF08402.10 gi|126179822|ref|YP_001047787.1| - 3.6e-05 23.9 0.2 0.00013 22.1 0.2 2.0 1 0 0 1 1 1 1 TOBE domain AAA_29 PF13555.6 gi|126179822|ref|YP_001047787.1| - 7e-05 22.5 0.0 0.00014 21.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|126179822|ref|YP_001047787.1| - 0.00022 21.6 0.1 0.00055 20.4 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|126179822|ref|YP_001047787.1| - 0.00039 19.9 0.0 0.2 11.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|126179822|ref|YP_001047787.1| - 0.0028 17.6 0.0 0.0057 16.6 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|126179822|ref|YP_001047787.1| - 0.017 14.9 0.0 0.11 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|126179822|ref|YP_001047787.1| - 0.021 14.5 0.0 0.37 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|126179822|ref|YP_001047787.1| - 0.033 14.4 0.1 0.57 10.5 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|126179822|ref|YP_001047787.1| - 0.047 13.8 0.1 0.18 12.0 0.0 2.1 3 0 0 3 3 2 0 AAA domain AAA_18 PF13238.6 gi|126179822|ref|YP_001047787.1| - 0.085 13.4 0.0 0.21 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|126179822|ref|YP_001047787.1| - 0.096 13.2 0.0 0.15 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|126179822|ref|YP_001047787.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain Pilus_CpaD PF09476.10 gi|126179822|ref|YP_001047787.1| - 0.13 12.0 0.1 0.29 10.9 0.0 1.4 1 1 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) SBP_bac_11 PF13531.6 gi|126179823|ref|YP_001047788.1| - 2.2e-33 115.9 0.0 3e-33 115.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|126179823|ref|YP_001047788.1| - 2.2e-10 41.0 0.3 4e-10 40.2 0.3 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|126179824|ref|YP_001047789.1| - 1.9e-19 70.2 12.0 1.9e-19 70.2 12.0 1.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component FtsX PF02687.21 gi|126179824|ref|YP_001047789.1| - 6.3 7.3 15.5 1e+04 -3.0 15.5 2.8 1 1 0 1 1 1 0 FtsX-like permease family ABC_tran PF00005.27 gi|126179825|ref|YP_001047790.1| - 2.6e-34 118.7 0.0 4.2e-34 118.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|126179825|ref|YP_001047790.1| - 6.2e-13 48.8 3.6 6.2e-13 48.8 3.6 2.8 3 0 0 3 3 2 1 TOBE domain AAA_21 PF13304.6 gi|126179825|ref|YP_001047790.1| - 3.5e-09 36.9 0.0 0.0021 17.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|126179825|ref|YP_001047790.1| - 4.9e-06 26.6 2.0 1.5e-05 25.1 2.0 1.9 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|126179825|ref|YP_001047790.1| - 2.1e-05 24.0 0.0 0.0014 18.1 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|126179825|ref|YP_001047790.1| - 0.00038 20.2 0.1 0.0049 16.6 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|126179825|ref|YP_001047790.1| - 0.00044 19.9 0.0 0.001 18.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain TniB PF05621.11 gi|126179825|ref|YP_001047790.1| - 0.0011 18.4 0.0 0.82 9.0 0.0 2.3 2 0 0 2 2 2 2 Bacterial TniB protein AAA_23 PF13476.6 gi|126179825|ref|YP_001047790.1| - 0.0044 17.6 0.0 0.0068 16.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|126179825|ref|YP_001047790.1| - 0.0074 16.7 0.1 0.015 15.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|126179825|ref|YP_001047790.1| - 0.0081 16.4 0.1 0.04 14.2 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|126179825|ref|YP_001047790.1| - 0.018 15.0 0.4 5.3 7.1 0.0 3.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|126179825|ref|YP_001047790.1| - 0.021 14.4 0.3 7.2 6.1 0.0 2.7 3 0 0 3 3 3 0 AAA domain Zeta_toxin PF06414.12 gi|126179825|ref|YP_001047790.1| - 0.038 13.3 0.0 0.095 12.0 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_15 PF13175.6 gi|126179825|ref|YP_001047790.1| - 0.052 13.2 0.0 4.5 6.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|126179825|ref|YP_001047790.1| - 0.057 13.8 0.2 0.47 10.9 0.2 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|126179825|ref|YP_001047790.1| - 0.13 12.5 0.3 1.9 8.7 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 gi|126179825|ref|YP_001047790.1| - 0.18 11.4 0.0 0.34 10.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|126179825|ref|YP_001047790.1| - 0.21 11.5 0.0 0.37 10.7 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea MFS_MOT1 PF16983.5 gi|126179826|ref|YP_001047791.1| - 3.6e-52 175.5 21.5 2.2e-30 105.3 6.1 3.1 4 0 0 4 4 4 2 Molybdate transporter of MFS superfamily Sulfate_transp PF00916.20 gi|126179826|ref|YP_001047791.1| - 6.9e-05 21.8 20.5 0.00028 19.8 7.6 2.8 1 1 2 3 3 3 2 Sulfate permease family BenE PF03594.13 gi|126179826|ref|YP_001047791.1| - 0.0005 19.0 28.6 0.006 15.4 28.6 2.1 1 1 0 1 1 1 1 Benzoate membrane transport protein SBP_bac_11 PF13531.6 gi|126179827|ref|YP_001047792.1| - 6.3e-42 143.9 0.0 7.3e-42 143.7 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|126179827|ref|YP_001047792.1| - 2.4e-07 31.0 0.0 0.0017 18.4 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|126179827|ref|YP_001047792.1| - 0.00027 20.4 0.0 0.00046 19.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|126179827|ref|YP_001047792.1| - 0.00033 20.3 0.0 0.00046 19.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_8 PF13416.6 gi|126179827|ref|YP_001047792.1| - 0.001 18.9 0.0 0.15 11.8 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein TrmO PF01980.16 gi|126179828|ref|YP_001047793.1| - 3.6e-38 130.4 0.0 4.5e-38 130.1 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O BPD_transp_1 PF00528.22 gi|126179829|ref|YP_001047794.1| - 1.8e-18 66.9 14.6 1.8e-18 66.9 14.6 2.3 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|126179830|ref|YP_001047795.1| - 5e-31 108.1 0.0 7.2e-31 107.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|126179830|ref|YP_001047795.1| - 9.8e-10 38.5 0.4 2.8e-09 37.0 0.4 1.9 1 0 0 1 1 1 1 TOBE domain TOBE PF03459.17 gi|126179830|ref|YP_001047795.1| - 2.5e-07 30.9 3.2 3.9e-07 30.3 0.1 2.8 3 0 0 3 3 3 1 TOBE domain AAA_21 PF13304.6 gi|126179830|ref|YP_001047795.1| - 1e-05 25.6 1.5 0.074 12.8 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_3 PF12857.7 gi|126179830|ref|YP_001047795.1| - 0.00033 20.5 1.1 0.00078 19.3 0.2 2.0 2 0 0 2 2 2 1 TOBE-like domain T2SSE PF00437.20 gi|126179830|ref|YP_001047795.1| - 0.0049 16.0 0.0 0.0078 15.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein SMC_N PF02463.19 gi|126179830|ref|YP_001047795.1| - 0.011 15.2 0.0 0.093 12.1 0.0 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain CysA_C_terminal PF17850.1 gi|126179830|ref|YP_001047795.1| - 0.034 14.7 0.1 0.13 12.8 0.1 2.1 1 0 0 1 1 1 0 CysA C-terminal regulatory domain AAA_30 PF13604.6 gi|126179830|ref|YP_001047795.1| - 0.05 13.3 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|126179830|ref|YP_001047795.1| - 0.054 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|126179830|ref|YP_001047795.1| - 0.06 12.1 0.2 0.43 9.3 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_23 PF13476.6 gi|126179830|ref|YP_001047795.1| - 0.067 13.7 0.1 0.11 13.0 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|126179830|ref|YP_001047795.1| - 0.073 13.5 0.1 0.35 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|126179830|ref|YP_001047795.1| - 0.11 11.9 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI HTH_50 PF18024.1 gi|126179831|ref|YP_001047796.1| - 0.0083 15.7 0.1 0.068 12.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|126179831|ref|YP_001047796.1| - 0.033 13.7 0.0 1.2 8.8 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|126179831|ref|YP_001047796.1| - 0.05 13.6 0.0 0.088 12.8 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain NikR_C PF08753.11 gi|126179831|ref|YP_001047796.1| - 0.086 13.0 0.1 0.15 12.2 0.1 1.3 1 0 0 1 1 1 0 NikR C terminal nickel binding domain AA_kinase PF00696.28 gi|126179833|ref|YP_001047798.1| - 4.6e-22 78.8 0.2 5.3e-21 75.3 0.2 2.0 1 1 0 1 1 1 1 Amino acid kinase family PBP_like_2 PF12849.7 gi|126179835|ref|YP_001047800.1| - 5.1e-29 101.8 0.3 6.8e-29 101.4 0.3 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|126179835|ref|YP_001047800.1| - 3.4e-08 33.5 0.0 1.2e-07 31.8 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein GlnE PF03710.15 gi|126179835|ref|YP_001047800.1| - 0.15 11.4 0.2 1.3 8.4 0.0 2.0 2 0 0 2 2 2 0 Glutamate-ammonia ligase adenylyltransferase LysR_substrate PF03466.20 gi|126179835|ref|YP_001047800.1| - 0.21 10.9 0.0 0.31 10.4 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain BPD_transp_1 PF00528.22 gi|126179836|ref|YP_001047801.1| - 6.5e-12 45.6 22.9 6.5e-12 45.6 22.9 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|126179837|ref|YP_001047802.1| - 3.5e-34 118.3 0.0 6.5e-34 117.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|126179837|ref|YP_001047802.1| - 1e-12 48.0 0.2 4.2e-12 46.0 0.0 2.2 1 1 1 2 2 2 1 TOBE domain TOBE PF03459.17 gi|126179837|ref|YP_001047802.1| - 8.2e-12 45.2 1.1 2.5e-10 40.5 0.0 3.1 3 1 0 3 3 2 1 TOBE domain AAA_21 PF13304.6 gi|126179837|ref|YP_001047802.1| - 2.9e-11 43.7 0.0 0.00016 21.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|126179837|ref|YP_001047802.1| - 1.3e-05 25.5 0.0 5.8e-05 23.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|126179837|ref|YP_001047802.1| - 0.00032 20.4 0.2 0.00071 19.3 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|126179837|ref|YP_001047802.1| - 0.0032 17.9 0.0 0.0043 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|126179837|ref|YP_001047802.1| - 0.0038 16.7 0.0 0.02 14.4 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|126179837|ref|YP_001047802.1| - 0.0053 16.7 0.1 0.012 15.5 0.1 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|126179837|ref|YP_001047802.1| - 0.036 14.5 0.2 0.055 14.0 0.2 1.2 1 0 0 1 1 1 0 AAA domain TOBE_3 PF12857.7 gi|126179837|ref|YP_001047802.1| - 0.042 13.8 0.0 0.12 12.3 0.0 1.9 1 0 0 1 1 1 0 TOBE-like domain AAA_15 PF13175.6 gi|126179837|ref|YP_001047802.1| - 0.061 13.0 0.0 0.66 9.6 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|126179837|ref|YP_001047802.1| - 0.076 12.7 0.1 0.15 11.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|126179837|ref|YP_001047802.1| - 0.086 13.1 0.1 1.9 8.8 0.1 2.6 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|126179837|ref|YP_001047802.1| - 0.16 12.1 0.0 0.37 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain Lactamase_B_2 PF12706.7 gi|126179838|ref|YP_001047803.1| - 6.8e-25 87.8 0.0 8.5e-25 87.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|126179838|ref|YP_001047803.1| - 2.1e-16 60.5 0.2 4.1e-16 59.6 0.1 1.5 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|126179838|ref|YP_001047803.1| - 0.012 15.5 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain PAS_4 PF08448.10 gi|126179839|ref|YP_001047804.1| - 5.4e-24 84.6 3.6 1.5e-11 44.5 0.2 3.5 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|126179839|ref|YP_001047804.1| - 1.2e-17 64.0 0.1 8.7e-08 32.2 0.0 4.0 3 2 0 3 3 3 2 PAS fold PAS_9 PF13426.7 gi|126179839|ref|YP_001047804.1| - 1.4e-14 54.2 0.0 8.5e-08 32.4 0.0 4.0 4 1 0 4 4 4 2 PAS domain PAS_8 PF13188.7 gi|126179839|ref|YP_001047804.1| - 7.6e-09 35.4 0.2 6.2e-06 26.1 0.0 3.3 4 0 0 4 4 4 2 PAS domain PAS_3 PF08447.12 gi|126179839|ref|YP_001047804.1| - 4.3e-06 26.9 0.0 0.0026 18.0 0.0 3.5 2 1 0 2 2 2 1 PAS fold PAS_7 PF12860.7 gi|126179839|ref|YP_001047804.1| - 0.0001 22.4 0.8 0.094 12.9 0.0 4.1 4 2 0 4 4 4 1 PAS fold LemA PF04011.12 gi|126179839|ref|YP_001047804.1| - 0.0092 15.8 0.6 0.35 10.7 0.0 2.2 2 0 0 2 2 2 1 LemA family 4HBT PF03061.22 gi|126179841|ref|YP_001047806.1| - 1.3e-11 44.6 0.6 2.1e-11 44.0 0.4 1.5 2 0 0 2 2 2 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|126179841|ref|YP_001047806.1| - 0.013 15.8 0.1 0.016 15.5 0.1 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily DUF4442 PF14539.6 gi|126179841|ref|YP_001047806.1| - 0.062 13.4 0.0 0.073 13.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4442) RhodobacterPufX PF11511.8 gi|126179841|ref|YP_001047806.1| - 0.066 12.8 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Intrinsic membrane protein PufX CTP_synth_N PF06418.14 gi|126179842|ref|YP_001047807.1| - 2.3e-120 400.9 0.7 2.9e-120 400.5 0.7 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|126179842|ref|YP_001047807.1| - 3.6e-53 180.2 0.0 7.5e-53 179.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CbiA PF01656.23 gi|126179842|ref|YP_001047807.1| - 5.7e-05 23.2 0.0 0.00013 22.0 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_C26 PF07722.13 gi|126179842|ref|YP_001047807.1| - 0.00028 20.7 0.0 0.0038 17.0 0.0 2.6 2 1 0 2 2 2 1 Peptidase C26 GMP_synt_C PF00958.22 gi|126179843|ref|YP_001047808.1| - 3.9e-28 97.3 0.0 8.5e-28 96.3 0.0 1.6 1 1 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|126179843|ref|YP_001047808.1| - 4.8e-11 42.2 0.0 7e-07 28.6 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|126179843|ref|YP_001047808.1| - 2.9e-05 23.0 0.0 0.00069 18.5 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase Arginosuc_synth PF00764.19 gi|126179843|ref|YP_001047808.1| - 0.00093 18.6 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|126179843|ref|YP_001047808.1| - 0.001 18.6 0.0 0.0056 16.2 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|126179843|ref|YP_001047808.1| - 0.0018 18.0 0.5 0.0034 17.1 0.5 1.6 1 1 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.19 gi|126179843|ref|YP_001047808.1| - 0.038 14.0 0.0 0.052 13.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.14 gi|126179843|ref|YP_001047808.1| - 0.044 13.4 0.1 0.12 12.0 0.1 1.7 2 1 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) Aminotran_3 PF00202.21 gi|126179844|ref|YP_001047809.1| - 5.2e-99 331.7 0.0 6.7e-99 331.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_5 PF00266.19 gi|126179844|ref|YP_001047809.1| - 0.21 10.5 0.0 0.35 9.8 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|126179845|ref|YP_001047810.1| - 1.6e-45 155.9 0.0 1.8e-45 155.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|126179845|ref|YP_001047810.1| - 0.00056 18.9 0.0 0.0008 18.4 0.0 1.3 1 0 0 1 1 1 1 Allinase AAA_18 PF13238.6 gi|126179846|ref|YP_001047811.1| - 1.7e-18 67.4 0.0 2.7e-18 66.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|126179846|ref|YP_001047811.1| - 2.7e-06 27.7 0.4 1.4e-05 25.4 0.1 1.9 1 1 1 2 2 2 1 AAA domain ATP_bind_2 PF03668.15 gi|126179846|ref|YP_001047811.1| - 0.00083 18.7 0.0 0.0011 18.3 0.0 1.1 1 0 0 1 1 1 1 P-loop ATPase protein family AAA_17 PF13207.6 gi|126179846|ref|YP_001047811.1| - 0.00086 19.7 0.5 0.31 11.5 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|126179846|ref|YP_001047811.1| - 0.0011 19.1 0.4 0.19 11.9 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|126179846|ref|YP_001047811.1| - 0.0019 18.6 0.0 0.0025 18.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|126179846|ref|YP_001047811.1| - 0.0078 16.0 0.0 0.009 15.7 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|126179846|ref|YP_001047811.1| - 0.028 14.7 0.1 0.045 14.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain Hpr_kinase_C PF07475.12 gi|126179846|ref|YP_001047811.1| - 0.034 13.7 0.0 0.051 13.1 0.0 1.3 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain CPT PF07931.12 gi|126179846|ref|YP_001047811.1| - 0.042 13.7 0.1 0.59 10.0 0.0 2.2 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein CoaE PF01121.20 gi|126179846|ref|YP_001047811.1| - 0.052 13.2 0.2 0.69 9.6 0.1 2.1 1 1 0 2 2 2 0 Dephospho-CoA kinase FlbD PF06289.11 gi|126179846|ref|YP_001047811.1| - 0.063 12.9 0.6 0.2 11.3 0.2 1.9 2 0 0 2 2 2 0 Flagellar and Swarming motility proteins AAA PF00004.29 gi|126179846|ref|YP_001047811.1| - 0.073 13.5 0.2 0.15 12.5 0.0 1.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|126179846|ref|YP_001047811.1| - 0.08 12.9 0.0 0.25 11.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) cobW PF02492.19 gi|126179846|ref|YP_001047811.1| - 0.089 12.4 0.1 0.17 11.5 0.1 1.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|126179846|ref|YP_001047811.1| - 0.11 11.5 1.1 0.51 9.3 0.2 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 gi|126179846|ref|YP_001047811.1| - 0.14 11.4 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin dNK PF01712.19 gi|126179846|ref|YP_001047811.1| - 0.15 11.9 0.0 14 5.5 0.0 2.2 1 1 1 2 2 2 0 Deoxynucleoside kinase CDP-OH_P_transf PF01066.21 gi|126179847|ref|YP_001047812.1| - 5.5e-10 39.9 4.3 5.5e-10 39.9 4.3 2.2 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase TspO_MBR PF03073.15 gi|126179848|ref|YP_001047813.1| - 5.5e-46 156.0 26.7 6.3e-46 155.8 26.7 1.0 1 0 0 1 1 1 1 TspO/MBR family DUF373 PF04123.13 gi|126179848|ref|YP_001047813.1| - 3.3 7.1 9.4 4.7 6.6 9.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF373) HATPase_c PF02518.26 gi|126179849|ref|YP_001047814.1| - 5.6e-18 65.5 0.0 1.2e-17 64.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|126179849|ref|YP_001047814.1| - 1.5e-16 60.4 0.0 4.2e-16 59.0 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|126179849|ref|YP_001047814.1| - 8.2e-14 51.8 0.1 4.5e-13 49.4 0.0 2.2 2 0 0 2 2 2 1 PAS fold Response_reg PF00072.24 gi|126179849|ref|YP_001047814.1| - 1.1e-13 51.3 0.0 2.3e-13 50.3 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain GAF_3 PF13492.6 gi|126179849|ref|YP_001047814.1| - 3e-12 47.0 0.1 9.1e-12 45.5 0.0 1.9 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.7 gi|126179849|ref|YP_001047814.1| - 2.7e-11 43.6 0.0 5.9e-11 42.5 0.0 1.6 1 0 0 1 1 1 1 PAS domain GAF_2 PF13185.6 gi|126179849|ref|YP_001047814.1| - 5e-10 39.8 0.0 1.9e-09 37.9 0.0 2.0 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|126179849|ref|YP_001047814.1| - 1.1e-08 35.7 0.0 3.5e-08 34.1 0.0 1.9 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|126179849|ref|YP_001047814.1| - 1.2e-08 34.8 0.0 3.4e-08 33.3 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 gi|126179849|ref|YP_001047814.1| - 0.018 15.2 0.0 0.37 10.9 0.0 2.8 2 1 0 2 2 2 0 PAS fold PAS_3 PF08447.12 gi|126179849|ref|YP_001047814.1| - 0.019 15.2 0.0 0.2 12.0 0.0 2.6 2 1 0 2 2 2 0 PAS fold HATPase_c_2 PF13581.6 gi|126179849|ref|YP_001047814.1| - 0.05 13.6 0.1 0.25 11.3 0.0 2.3 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain PKD PF00801.20 gi|126179850|ref|YP_001047815.1| - 2.3e-45 152.3 61.7 7.1e-15 54.6 8.0 6.4 6 0 0 6 6 5 4 PKD domain Kelch_6 PF13964.6 gi|126179850|ref|YP_001047815.1| - 1.9e-18 66.0 13.4 0.044 14.1 0.0 7.3 7 0 0 7 7 7 6 Kelch motif Kelch_4 PF13418.6 gi|126179850|ref|YP_001047815.1| - 4.9e-16 58.5 29.9 0.014 15.4 0.3 7.3 8 0 0 8 8 6 6 Galactose oxidase, central domain Kelch_5 PF13854.6 gi|126179850|ref|YP_001047815.1| - 4.8e-13 48.8 7.8 0.00079 19.4 0.1 6.5 6 0 0 6 6 6 3 Kelch motif Kelch_2 PF07646.15 gi|126179850|ref|YP_001047815.1| - 5.7e-12 45.1 21.4 0.041 13.9 0.1 7.6 7 0 0 7 7 7 5 Kelch motif Sortilin-Vps10 PF15902.5 gi|126179850|ref|YP_001047815.1| - 4.5e-11 42.2 0.1 7.2e-06 25.1 0.0 2.3 1 1 0 2 2 2 2 Sortilin, neurotensin receptor 3, Kelch_1 PF01344.25 gi|126179850|ref|YP_001047815.1| - 8.5e-07 28.5 10.3 0.0097 15.5 0.1 6.0 6 0 0 6 6 6 1 Kelch motif Glyoxal_oxid_N PF07250.11 gi|126179850|ref|YP_001047815.1| - 7e-06 25.4 5.7 0.14 11.3 0.2 3.2 3 0 0 3 3 3 3 Glyoxal oxidase N-terminus Y_Y_Y PF07495.13 gi|126179850|ref|YP_001047815.1| - 8e-06 25.7 8.8 0.092 12.7 0.1 4.5 4 0 0 4 4 4 2 Y_Y_Y domain BNR_2 PF13088.6 gi|126179850|ref|YP_001047815.1| - 1.5e-05 24.4 10.5 0.00035 20.0 2.3 3.3 1 1 3 4 4 4 3 BNR repeat-like domain PKD_3 PF16820.5 gi|126179850|ref|YP_001047815.1| - 0.00012 21.7 18.9 0.087 12.6 0.2 5.6 6 0 0 6 6 6 2 PKD-like domain ChitinaseA_N PF08329.10 gi|126179850|ref|YP_001047815.1| - 0.0028 17.3 7.4 2.6 7.7 0.0 5.0 4 1 0 5 5 5 1 Chitinase A, N-terminal domain BNR_6 PF15899.5 gi|126179850|ref|YP_001047815.1| - 0.0071 16.3 0.4 15 5.9 0.0 4.0 4 0 0 4 4 4 0 BNR-Asp box repeat CopC PF04234.12 gi|126179850|ref|YP_001047815.1| - 0.0094 17.0 11.4 6.5 7.9 0.1 4.7 4 0 0 4 4 4 1 CopC domain MG2 PF01835.19 gi|126179850|ref|YP_001047815.1| - 0.078 13.4 11.5 5.4 7.6 0.4 4.1 2 2 2 4 4 4 0 MG2 domain FeThRed_A PF02941.15 gi|126179850|ref|YP_001047815.1| - 0.15 12.3 0.1 62 3.8 0.0 3.4 4 0 0 4 4 4 0 Ferredoxin thioredoxin reductase variable alpha chain DUF3324 PF11797.8 gi|126179850|ref|YP_001047815.1| - 0.28 11.2 4.4 8.9 6.3 0.0 3.7 4 0 0 4 4 4 0 Protein of unknown function C-terminal (DUF3324) Tox-HDC PF15656.6 gi|126179850|ref|YP_001047815.1| - 0.39 10.9 2.9 13 6.0 0.0 3.0 3 0 0 3 3 2 0 Toxin with a H, D/N and C signature BNR PF02012.20 gi|126179850|ref|YP_001047815.1| - 1.2 9.4 28.2 0.85 9.9 0.4 6.3 5 0 0 5 5 5 0 BNR/Asp-box repeat FlgD_ig PF13860.6 gi|126179850|ref|YP_001047815.1| - 3.3 7.7 19.6 3.9 7.4 0.6 5.3 5 0 0 5 5 5 0 FlgD Ig-like domain sCache_2 PF17200.4 gi|126179851|ref|YP_001047816.1| - 2.3e-19 69.8 0.2 3.1e-19 69.3 0.2 1.2 1 1 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 gi|126179851|ref|YP_001047816.1| - 4.4e-15 55.6 0.1 5.7e-15 55.3 0.1 1.2 1 0 0 1 1 1 1 Cache domain Phage_Cox PF10743.9 gi|126179851|ref|YP_001047816.1| - 0.16 12.1 0.0 0.29 11.2 0.0 1.4 1 0 0 1 1 1 0 Regulatory phage protein cox DUF1894 PF08979.11 gi|126179852|ref|YP_001047817.1| - 1e-36 125.1 0.1 1.1e-36 125.0 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) DUF1890 PF09001.11 gi|126179853|ref|YP_001047818.1| - 3.4e-59 199.2 0.0 3.8e-59 199.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) TbpB_B_D PF01298.18 gi|126179853|ref|YP_001047818.1| - 0.11 12.9 0.0 0.13 12.6 0.0 1.2 1 0 0 1 1 1 0 C-lobe and N-lobe beta barrels of Tf-binding protein B FdhD-NarQ PF02634.15 gi|126179854|ref|YP_001047819.1| - 2.4e-55 187.8 0.7 3.9e-55 187.1 0.7 1.3 1 1 0 1 1 1 1 FdhD/NarQ family CutA1 PF03091.15 gi|126179855|ref|YP_001047820.1| - 5.2e-33 112.9 0.0 5.9e-33 112.7 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Semialdhyde_dh PF01118.24 gi|126179855|ref|YP_001047820.1| - 0.032 14.6 0.0 0.035 14.6 0.0 1.2 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Herpes_UL14 PF03580.14 gi|126179855|ref|YP_001047820.1| - 0.045 14.0 0.0 0.058 13.6 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus UL14-like protein NifU_N PF01592.16 gi|126179856|ref|YP_001047821.1| - 6.7e-46 155.6 0.0 7.7e-46 155.4 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain DUF2124 PF09897.9 gi|126179856|ref|YP_001047821.1| - 0.05 13.5 0.0 0.065 13.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2124) Aminotran_5 PF00266.19 gi|126179857|ref|YP_001047822.1| - 3.6e-84 282.8 0.0 4.3e-84 282.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|126179857|ref|YP_001047822.1| - 9e-07 28.4 0.1 1.5e-06 27.7 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|126179857|ref|YP_001047822.1| - 2.7e-06 27.0 1.1 4e-06 26.4 1.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|126179857|ref|YP_001047822.1| - 0.0021 16.7 0.0 0.003 16.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|126179858|ref|YP_001047823.1| - 1e-61 209.1 0.0 1.2e-61 208.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|126179858|ref|YP_001047823.1| - 9.2e-05 21.1 0.0 0.00015 20.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Orn_Arg_deC_N PF02784.16 gi|126179859|ref|YP_001047824.1| - 1.1e-52 178.9 0.0 1.5e-52 178.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|126179859|ref|YP_001047824.1| - 4.7e-26 90.9 0.0 5.1e-26 90.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|126179859|ref|YP_001047824.1| - 6.4e-11 42.3 0.0 2.2e-10 40.5 0.0 1.9 2 1 0 2 2 2 1 Alanine racemase, N-terminal domain tRNA_anti-codon PF01336.25 gi|126179860|ref|YP_001047825.1| - 2.2e-21 75.6 0.2 2.5e-06 27.3 0.0 4.8 4 1 1 5 5 5 4 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|126179860|ref|YP_001047825.1| - 0.0015 18.3 0.0 0.61 9.8 0.0 2.2 2 0 0 2 2 2 2 Cell division control protein 24, OB domain 3 Rad51 PF08423.11 gi|126179861|ref|YP_001047826.1| - 3.9e-76 255.7 0.0 4.7e-76 255.4 0.0 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|126179861|ref|YP_001047826.1| - 5e-13 49.4 2.5 8.1e-13 48.8 1.2 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain ATPase PF06745.13 gi|126179861|ref|YP_001047826.1| - 6.9e-10 38.7 0.0 9.8e-10 38.2 0.0 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|126179861|ref|YP_001047826.1| - 6.2e-09 35.7 0.0 1e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|126179861|ref|YP_001047826.1| - 3.6e-08 33.2 0.0 0.00067 19.2 0.0 2.3 2 0 0 2 2 2 2 recA bacterial DNA recombination protein HHH PF00633.23 gi|126179861|ref|YP_001047826.1| - 6.2e-07 29.0 2.4 0.0084 15.9 0.1 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|126179861|ref|YP_001047826.1| - 7.8e-06 25.9 0.2 2.3e-05 24.4 0.2 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|126179861|ref|YP_001047826.1| - 0.00046 20.0 0.4 0.0024 17.6 0.0 2.4 3 0 0 3 3 3 1 Fingers domain of DNA polymerase lambda ATPase_2 PF01637.18 gi|126179861|ref|YP_001047826.1| - 0.0014 18.6 0.0 0.003 17.5 0.0 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea Cdd1 PF11731.8 gi|126179861|ref|YP_001047826.1| - 0.0015 18.7 0.0 0.0034 17.6 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus AAA_22 PF13401.6 gi|126179861|ref|YP_001047826.1| - 0.0025 18.1 0.0 0.0053 17.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain IMS_HHH PF11798.8 gi|126179861|ref|YP_001047826.1| - 0.005 17.1 0.0 0.03 14.7 0.0 2.4 2 0 0 2 2 1 1 IMS family HHH motif HHH_3 PF12836.7 gi|126179861|ref|YP_001047826.1| - 0.0073 16.5 0.1 0.67 10.2 0.1 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|126179861|ref|YP_001047826.1| - 0.0073 16.7 0.2 0.63 10.4 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_16 PF13191.6 gi|126179861|ref|YP_001047826.1| - 0.0089 16.4 0.0 0.014 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain CobU PF02283.16 gi|126179861|ref|YP_001047826.1| - 0.022 14.3 1.4 0.25 10.9 0.0 2.5 3 0 0 3 3 3 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_24 PF13479.6 gi|126179861|ref|YP_001047826.1| - 0.038 13.7 0.0 0.11 12.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain LytR_C PF13399.6 gi|126179861|ref|YP_001047826.1| - 0.046 14.7 0.4 0.16 12.9 0.3 2.0 2 0 0 2 2 1 0 LytR cell envelope-related transcriptional attenuator BAF PF02961.14 gi|126179861|ref|YP_001047826.1| - 0.19 12.2 0.0 0.42 11.1 0.0 1.6 1 0 0 1 1 1 0 Barrier to autointegration factor TMP_2 PF06791.13 gi|126179861|ref|YP_001047826.1| - 2.5 7.7 6.4 0.38 10.4 1.8 1.8 2 0 0 2 2 2 0 Prophage tail length tape measure protein Hydrolase_3 PF08282.12 gi|126179862|ref|YP_001047827.1| - 9.3e-35 120.6 0.0 5.1e-21 75.6 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|126179862|ref|YP_001047827.1| - 1.6e-15 57.9 1.9 2.9e-08 34.3 0.1 3.1 1 1 2 3 3 3 3 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|126179862|ref|YP_001047827.1| - 3.8e-09 36.4 0.1 3.6e-08 33.2 0.1 2.0 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|126179862|ref|YP_001047827.1| - 1.1e-08 35.7 1.5 0.0055 17.1 0.0 3.0 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|126179862|ref|YP_001047827.1| - 4.8e-05 23.5 0.2 0.0025 17.9 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|126179862|ref|YP_001047827.1| - 0.0031 17.6 0.1 0.0094 16.0 0.1 1.8 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|126179862|ref|YP_001047827.1| - 0.039 13.1 0.0 0.065 12.4 0.0 1.5 1 1 0 1 1 1 0 Trehalose-phosphatase Hydrolase_like PF13242.6 gi|126179862|ref|YP_001047827.1| - 0.046 13.8 0.7 0.078 13.1 0.0 1.7 2 0 0 2 2 2 0 HAD-hyrolase-like SinI PF08671.10 gi|126179862|ref|YP_001047827.1| - 0.4 10.5 1.1 0.6 10.0 0.0 1.9 2 0 0 2 2 2 0 Anti-repressor SinI PRC PF05239.16 gi|126179863|ref|YP_001047828.1| - 4.1e-13 49.2 0.5 4.8e-13 49.0 0.5 1.0 1 0 0 1 1 1 1 PRC-barrel domain CBFD_NFYB_HMF PF00808.23 gi|126179864|ref|YP_001047829.1| - 8.3e-18 64.4 0.3 9.1e-18 64.3 0.3 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|126179864|ref|YP_001047829.1| - 2.4e-09 37.7 0.1 2.9e-09 37.4 0.1 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|126179864|ref|YP_001047829.1| - 9.7e-07 28.9 0.0 1.1e-06 28.7 0.0 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TFIID-31kDa PF02291.15 gi|126179864|ref|YP_001047829.1| - 3e-05 24.1 0.0 3.2e-05 24.0 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit Bromo_TP PF07524.13 gi|126179864|ref|YP_001047829.1| - 3.7e-05 23.6 0.0 4e-05 23.5 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated CENP-S PF15630.6 gi|126179864|ref|YP_001047829.1| - 0.00011 22.6 0.0 0.00012 22.3 0.0 1.1 1 0 0 1 1 1 1 CENP-S protein TAF PF02969.17 gi|126179864|ref|YP_001047829.1| - 0.00012 22.2 0.3 0.00013 22.1 0.3 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) V-ATPase_G_2 PF16999.5 gi|126179864|ref|YP_001047829.1| - 0.021 15.3 2.0 0.024 15.0 2.0 1.1 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit TFIID_20kDa PF03847.13 gi|126179864|ref|YP_001047829.1| - 0.029 14.9 0.0 0.032 14.7 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A DUF4239 PF14023.6 gi|126179864|ref|YP_001047829.1| - 0.071 12.8 0.0 0.088 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4239) HrcA_DNA-bdg PF03444.15 gi|126179865|ref|YP_001047830.1| - 3.4e-36 122.8 0.1 6.1e-36 121.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|126179865|ref|YP_001047830.1| - 6.1e-25 87.4 4.0 2.3e-12 47.2 0.0 2.7 3 0 0 3 3 2 2 CBS domain Rrf2 PF02082.20 gi|126179865|ref|YP_001047830.1| - 5.4e-08 33.1 0.2 3.6e-07 30.4 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.12 gi|126179865|ref|YP_001047830.1| - 9.9e-08 31.8 0.0 1.7e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.12 gi|126179865|ref|YP_001047830.1| - 0.0099 15.5 0.0 0.043 13.5 0.0 2.1 1 1 0 1 1 1 1 Sigma-70, region 4 MarR PF01047.22 gi|126179865|ref|YP_001047830.1| - 0.025 14.5 0.0 0.046 13.6 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.20 gi|126179865|ref|YP_001047830.1| - 0.028 14.3 0.0 0.06 13.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|126179865|ref|YP_001047830.1| - 0.029 13.9 0.1 0.15 11.7 0.1 2.3 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|126179865|ref|YP_001047830.1| - 0.079 12.9 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|126179865|ref|YP_001047830.1| - 0.12 12.3 0.0 0.33 10.9 0.0 1.8 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 gi|126179865|ref|YP_001047830.1| - 0.12 12.6 0.2 0.27 11.4 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.7 gi|126179865|ref|YP_001047830.1| - 0.12 12.4 0.0 0.34 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|126179865|ref|YP_001047830.1| - 0.14 11.9 0.0 0.6 9.9 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain NOG1_N PF17835.1 gi|126179866|ref|YP_001047831.1| - 3.3e-38 131.2 0.0 5e-38 130.6 0.0 1.2 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|126179866|ref|YP_001047831.1| - 4.5e-21 74.4 0.1 7.9e-21 73.6 0.1 1.4 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|126179866|ref|YP_001047831.1| - 1.4e-19 70.3 0.0 2.4e-19 69.5 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|126179866|ref|YP_001047831.1| - 2.5e-08 33.6 0.0 5.3e-08 32.5 0.0 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|126179866|ref|YP_001047831.1| - 0.00025 21.1 0.3 0.0058 16.7 0.0 2.4 1 1 1 2 2 2 1 Dynamin family GTP_EFTU PF00009.27 gi|126179866|ref|YP_001047831.1| - 0.073 12.6 0.3 0.46 10.0 0.1 2.3 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain Ras PF00071.22 gi|126179866|ref|YP_001047831.1| - 0.16 11.5 0.1 1.5 8.4 0.1 2.5 2 1 0 2 2 2 0 Ras family SPP PF06550.11 gi|126179867|ref|YP_001047832.1| - 8.7e-82 274.8 25.2 1.1e-81 274.4 25.2 1.0 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Peptidase_A22B PF04258.13 gi|126179867|ref|YP_001047832.1| - 5.1e-09 36.1 12.4 7.1e-09 35.6 12.4 1.3 1 0 0 1 1 1 1 Signal peptide peptidase Presenilin PF01080.17 gi|126179867|ref|YP_001047832.1| - 0.00079 18.3 20.8 0.038 12.7 17.4 2.2 1 1 1 2 2 2 2 Presenilin DUF2569 PF10754.9 gi|126179867|ref|YP_001047832.1| - 1.8 9.0 15.7 0.28 11.6 10.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2569) DUF2884 PF11101.8 gi|126179868|ref|YP_001047833.1| - 0.049 13.1 0.5 0.054 13.0 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) DUF948 PF06103.11 gi|126179868|ref|YP_001047833.1| - 0.1 12.8 0.0 0.1 12.8 0.0 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Vps55 PF04133.14 gi|126179868|ref|YP_001047833.1| - 0.16 11.9 4.0 0.22 11.5 4.0 1.2 1 0 0 1 1 1 0 Vacuolar protein sorting 55 XPG_I PF00867.18 gi|126179869|ref|YP_001047834.1| - 6.5e-27 93.7 0.0 1.1e-26 93.0 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|126179869|ref|YP_001047834.1| - 4.5e-16 59.2 0.0 6.6e-16 58.6 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc_N PF02739.16 gi|126179869|ref|YP_001047834.1| - 0.041 13.8 0.0 0.1 12.5 0.0 1.6 1 1 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain 5_3_exonuc PF01367.20 gi|126179869|ref|YP_001047834.1| - 0.058 14.0 0.0 0.14 12.7 0.0 1.7 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|126179869|ref|YP_001047834.1| - 0.075 13.7 0.0 0.24 12.0 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain DUF2193 PF09959.9 gi|126179870|ref|YP_001047835.1| - 3e-272 903.4 4.2 3.4e-272 903.2 4.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) DUF2180 PF09947.9 gi|126179871|ref|YP_001047836.1| - 1.8e-36 123.9 3.6 2e-36 123.8 3.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) zf-UBP_var PF17807.1 gi|126179871|ref|YP_001047836.1| - 0.0082 15.9 0.2 0.011 15.5 0.2 1.3 1 0 0 1 1 1 1 Variant UBP zinc finger Tnp_zf-ribbon_2 PF13842.6 gi|126179871|ref|YP_001047836.1| - 0.01 16.6 1.9 0.041 14.7 0.4 2.0 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Transp_Tc5_C PF04236.15 gi|126179871|ref|YP_001047836.1| - 0.05 14.0 2.1 0.085 13.2 2.1 1.5 1 0 0 1 1 1 0 Tc5 transposase C-terminal domain Elf1 PF05129.13 gi|126179871|ref|YP_001047836.1| - 0.19 11.8 2.6 0.24 11.5 0.8 1.9 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like MIP PF00230.20 gi|126179872|ref|YP_001047837.1| - 1.1e-48 165.9 19.6 1.3e-48 165.7 19.6 1.0 1 0 0 1 1 1 1 Major intrinsic protein TPP_enzyme_N PF02776.18 gi|126179873|ref|YP_001047838.1| - 2.4e-45 154.2 3.6 6.7e-45 152.8 0.7 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|126179873|ref|YP_001047838.1| - 2.7e-40 137.7 0.5 7.3e-40 136.3 0.3 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|126179873|ref|YP_001047838.1| - 8.3e-28 96.8 0.2 1.7e-27 95.8 0.2 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain DUF2300 PF10062.9 gi|126179873|ref|YP_001047838.1| - 0.084 13.0 0.2 0.17 12.0 0.2 1.4 1 0 0 1 1 1 0 Predicted secreted protein (DUF2300) E1_dh PF00676.20 gi|126179873|ref|YP_001047838.1| - 0.15 11.0 0.2 2 7.3 0.0 2.1 2 0 0 2 2 2 0 Dehydrogenase E1 component Rubredoxin PF00301.20 gi|126179874|ref|YP_001047839.1| - 4.1e-21 74.7 2.1 5.7e-21 74.3 2.1 1.2 1 0 0 1 1 1 1 Rubredoxin PHD_4 PF16866.5 gi|126179874|ref|YP_001047839.1| - 0.004 17.2 2.1 0.017 15.2 2.1 2.0 1 1 0 1 1 1 1 PHD-finger zf-RanBP PF00641.18 gi|126179874|ref|YP_001047839.1| - 0.0051 16.1 3.8 0.3 10.4 0.3 2.1 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others Vps36-NZF-N PF16988.5 gi|126179874|ref|YP_001047839.1| - 0.016 14.5 0.1 0.85 9.1 0.0 2.1 2 0 0 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain PHD PF00628.29 gi|126179874|ref|YP_001047839.1| - 0.057 13.3 1.1 2.1 8.3 0.0 2.2 2 0 0 2 2 2 0 PHD-finger HypA PF01155.19 gi|126179874|ref|YP_001047839.1| - 0.072 13.1 0.1 0.077 13.0 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-MIZ PF02891.20 gi|126179874|ref|YP_001047839.1| - 0.13 12.1 2.7 3.6 7.4 0.2 2.1 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger Zn_ribbon_SprT PF17283.2 gi|126179874|ref|YP_001047839.1| - 0.24 11.3 2.8 5.1 7.1 0.0 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Rubredoxin_2 PF18073.1 gi|126179874|ref|YP_001047839.1| - 0.26 11.1 6.1 4.2 7.2 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Endonuclease_5 PF04493.14 gi|126179875|ref|YP_001047840.1| - 3.2e-72 242.4 0.0 3.9e-72 242.1 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.16 gi|126179875|ref|YP_001047840.1| - 0.0021 17.5 0.2 0.0077 15.7 0.1 1.9 3 0 0 3 3 3 1 Protein of unknown function DUF99 Lactamase_B PF00753.27 gi|126179876|ref|YP_001047841.1| - 3e-11 43.7 0.1 6.4e-11 42.6 0.1 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.25 gi|126179876|ref|YP_001047841.1| - 4.1e-05 23.8 0.0 7.2e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.7 gi|126179876|ref|YP_001047841.1| - 0.037 13.5 0.0 0.081 12.4 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain PRK PF00485.18 gi|126179877|ref|YP_001047842.1| - 7.7e-50 169.4 0.0 1.3e-49 168.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.6 gi|126179877|ref|YP_001047842.1| - 0.00092 19.8 0.0 0.002 18.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|126179877|ref|YP_001047842.1| - 0.007 15.5 0.0 0.019 14.0 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|126179877|ref|YP_001047842.1| - 0.009 16.4 0.0 0.017 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain TsaE PF02367.17 gi|126179877|ref|YP_001047842.1| - 0.017 15.2 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|126179877|ref|YP_001047842.1| - 0.05 14.1 0.0 0.093 13.2 0.0 1.6 1 0 0 1 1 1 0 ABC transporter ATP_bind_1 PF03029.17 gi|126179877|ref|YP_001047842.1| - 0.07 12.9 0.0 0.17 11.7 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 gi|126179877|ref|YP_001047842.1| - 0.11 11.8 0.0 0.28 10.4 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin AAA_30 PF13604.6 gi|126179877|ref|YP_001047842.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|126179877|ref|YP_001047842.1| - 0.12 12.9 0.0 0.38 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain IIGP PF05049.13 gi|126179877|ref|YP_001047842.1| - 0.13 11.2 0.1 0.2 10.7 0.1 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) AAA_33 PF13671.6 gi|126179877|ref|YP_001047842.1| - 0.16 12.1 0.1 1.6 8.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain TrkH PF02386.16 gi|126179878|ref|YP_001047843.1| - 4e-54 183.9 21.4 1.9e-53 181.7 21.4 1.8 1 1 0 1 1 1 1 Cation transport protein ATLF PF07737.11 gi|126179879|ref|YP_001047844.1| - 0.0008 18.8 0.0 0.0015 17.8 0.0 1.4 1 0 0 1 1 1 1 Anthrax toxin lethal factor, N- and C-terminal domain Fer4_NifH PF00142.18 gi|126179880|ref|YP_001047845.1| - 3.7e-111 370.9 0.1 4.1e-111 370.8 0.1 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|126179880|ref|YP_001047845.1| - 7.6e-12 45.4 0.0 1.1e-11 44.9 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|126179880|ref|YP_001047845.1| - 1.3e-07 31.8 0.0 2.2e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|126179880|ref|YP_001047845.1| - 2.1e-06 27.4 0.1 0.00012 21.6 0.0 2.2 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|126179880|ref|YP_001047845.1| - 6.4e-06 25.6 0.3 1.2e-05 24.6 0.1 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_16 PF13191.6 gi|126179880|ref|YP_001047845.1| - 0.0032 17.8 0.1 0.032 14.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.6 gi|126179880|ref|YP_001047845.1| - 0.0046 16.7 0.0 0.0079 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|126179880|ref|YP_001047845.1| - 0.0049 16.5 0.1 0.013 15.1 0.1 1.6 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|126179880|ref|YP_001047845.1| - 0.0067 15.8 2.0 0.029 13.7 0.1 2.5 2 1 0 2 2 2 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|126179880|ref|YP_001047845.1| - 0.03 13.8 0.6 0.37 10.2 0.1 2.2 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ RNA_helicase PF00910.22 gi|126179880|ref|YP_001047845.1| - 0.036 14.5 0.1 0.12 12.8 0.0 1.9 2 1 0 2 2 2 0 RNA helicase SRP54 PF00448.22 gi|126179880|ref|YP_001047845.1| - 0.068 12.8 0.1 0.17 11.5 0.1 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF815 PF05673.13 gi|126179880|ref|YP_001047845.1| - 0.16 11.1 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_5 PF07728.14 gi|126179880|ref|YP_001047845.1| - 0.18 11.8 0.1 1.8 8.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|126179880|ref|YP_001047845.1| - 0.44 10.4 1.3 0.71 9.8 0.4 1.7 2 0 0 2 2 2 0 NACHT domain Oxidored_nitro PF00148.19 gi|126179881|ref|YP_001047846.1| - 7e-56 189.7 0.1 8.5e-56 189.4 0.1 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Usp PF00582.26 gi|126179882|ref|YP_001047847.1| - 3.3e-28 98.9 0.3 5.4e-28 98.3 0.3 1.3 1 1 0 1 1 1 1 Universal stress protein family bPH_2 PF03703.14 gi|126179883|ref|YP_001047848.1| - 3.5e-18 65.6 0.2 6.2e-18 64.8 0.2 1.4 1 0 0 1 1 1 1 Bacterial PH domain FA_desaturase PF00487.24 gi|126179883|ref|YP_001047848.1| - 0.057 13.2 5.7 0.069 13.0 5.7 1.1 1 0 0 1 1 1 0 Fatty acid desaturase DUF716 PF04819.12 gi|126179883|ref|YP_001047848.1| - 0.19 11.4 2.0 0.34 10.5 2.0 1.5 1 1 0 1 1 1 0 Family of unknown function (DUF716) Renin_r PF07850.14 gi|126179883|ref|YP_001047848.1| - 0.31 11.7 1.7 0.6 10.8 1.7 1.6 1 1 0 1 1 1 0 Renin receptor-like protein Acetyltransf_1 PF00583.25 gi|126179884|ref|YP_001047849.1| - 1.2e-17 64.2 0.2 1.5e-17 63.9 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|126179884|ref|YP_001047849.1| - 2e-12 46.9 0.0 3e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|126179884|ref|YP_001047849.1| - 3.2e-10 40.0 0.0 3.8e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|126179884|ref|YP_001047849.1| - 4.1e-10 39.9 0.3 5.6e-10 39.5 0.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|126179884|ref|YP_001047849.1| - 5.4e-06 26.6 0.0 6.4e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|126179884|ref|YP_001047849.1| - 9.7e-06 26.3 0.1 1.1e-05 26.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|126179884|ref|YP_001047849.1| - 0.00016 21.4 0.1 0.00023 20.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|126179884|ref|YP_001047849.1| - 0.00027 21.0 0.0 0.00039 20.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|126179884|ref|YP_001047849.1| - 0.0026 17.9 0.2 0.0051 16.9 0.1 1.5 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.7 gi|126179884|ref|YP_001047849.1| - 0.0036 17.5 1.4 0.0054 16.9 1.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|126179884|ref|YP_001047849.1| - 0.0082 15.9 0.5 0.0096 15.6 0.5 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ DUF2156 PF09924.9 gi|126179884|ref|YP_001047849.1| - 0.025 13.6 0.0 0.032 13.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2156) Acetyltransf_15 PF17013.5 gi|126179884|ref|YP_001047849.1| - 0.062 12.8 0.0 0.13 11.8 0.0 1.4 1 1 0 1 1 1 0 Putative acetyl-transferase Robl_LC7 PF03259.17 gi|126179885|ref|YP_001047850.1| - 0.11 12.3 0.5 0.33 10.7 0.3 1.8 1 1 1 2 2 2 0 Roadblock/LC7 domain Oxidored_nitro PF00148.19 gi|126179886|ref|YP_001047851.1| - 2.5e-38 131.8 1.0 1.3e-36 126.2 1.0 2.0 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase PsbR PF04725.12 gi|126179888|ref|YP_001047853.1| - 0.17 12.3 0.4 2 8.8 0.1 2.2 1 1 1 2 2 2 0 Photosystem II 10 kDa polypeptide PsbR Iso_dh PF00180.20 gi|126179890|ref|YP_001047855.1| - 1.5e-92 310.4 0.0 1.8e-92 310.2 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.19 gi|126179891|ref|YP_001047856.1| - 9.3e-24 84.2 0.0 1.6e-22 80.2 0.1 2.0 1 1 1 2 2 2 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|126179891|ref|YP_001047856.1| - 0.0011 18.7 0.2 0.01 15.5 0.2 2.2 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Aconitase PF00330.20 gi|126179892|ref|YP_001047857.1| - 4.2e-93 312.9 3.8 4.4e-91 306.2 3.8 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) MutS_V PF00488.21 gi|126179893|ref|YP_001047858.1| - 1.8e-79 266.2 0.7 3e-79 265.5 0.7 1.4 1 0 0 1 1 1 1 MutS domain V MutS_I PF01624.20 gi|126179893|ref|YP_001047858.1| - 2.5e-44 150.1 0.0 6.3e-44 148.8 0.0 1.7 1 0 0 1 1 1 1 MutS domain I MutS_III PF05192.18 gi|126179893|ref|YP_001047858.1| - 1e-34 120.4 0.0 1.6e-34 119.8 0.0 1.3 1 0 0 1 1 1 1 MutS domain III MutS_IV PF05190.18 gi|126179893|ref|YP_001047858.1| - 2.2e-30 104.8 0.0 3.9e-30 104.1 0.0 1.4 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|126179893|ref|YP_001047858.1| - 5.1e-24 85.1 0.0 1.3e-23 83.8 0.0 1.7 2 0 0 2 2 2 1 MutS domain II AAA_27 PF13514.6 gi|126179893|ref|YP_001047858.1| - 0.005 16.4 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|126179893|ref|YP_001047858.1| - 0.028 14.9 0.0 0.058 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain TFIIB PF00382.19 gi|126179893|ref|YP_001047858.1| - 0.072 13.1 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 Transcription factor TFIIB repeat AAA_29 PF13555.6 gi|126179893|ref|YP_001047858.1| - 0.096 12.4 0.0 0.27 11.0 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain MutL_C PF08676.11 gi|126179894|ref|YP_001047859.1| - 2.4e-35 121.5 0.0 5.4e-35 120.3 0.0 1.5 2 0 0 2 2 2 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|126179894|ref|YP_001047859.1| - 1.8e-33 114.7 0.0 2.8e-33 114.1 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|126179894|ref|YP_001047859.1| - 1.5e-12 47.5 0.0 2.6e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|126179894|ref|YP_001047859.1| - 2.6e-07 31.1 0.0 6.3e-07 29.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PSRT PF07636.11 gi|126179895|ref|YP_001047860.1| - 0.24 11.1 1.5 0.51 10.1 0.1 2.1 2 0 0 2 2 2 0 PSRT PsbP PF01789.16 gi|126179896|ref|YP_001047861.1| - 0.0071 16.5 0.1 0.008 16.3 0.1 1.1 1 0 0 1 1 1 1 PsbP PepSY_like PF11396.8 gi|126179896|ref|YP_001047861.1| - 0.012 16.1 0.0 0.031 14.8 0.0 1.7 1 1 0 1 1 1 0 Putative beta-lactamase-inhibitor-like, PepSY-like Lon_C PF05362.13 gi|126179897|ref|YP_001047862.1| - 2.8e-17 62.9 0.2 4.4e-17 62.3 0.2 1.2 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|126179897|ref|YP_001047862.1| - 0.0076 16.1 0.1 0.013 15.3 0.1 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase Methyltransf_25 PF13649.6 gi|126179898|ref|YP_001047863.1| - 2.7e-24 85.7 0.0 5.4e-24 84.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126179898|ref|YP_001047863.1| - 4.9e-24 84.8 0.0 7.5e-24 84.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126179898|ref|YP_001047863.1| - 1.8e-23 83.0 0.0 2.4e-23 82.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126179898|ref|YP_001047863.1| - 1.8e-17 63.9 0.0 2.6e-17 63.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|126179898|ref|YP_001047863.1| - 1.3e-13 51.1 0.0 2e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|126179898|ref|YP_001047863.1| - 1.1e-11 44.5 0.0 1.6e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|126179898|ref|YP_001047863.1| - 2.9e-10 40.0 0.0 4e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.18 gi|126179898|ref|YP_001047863.1| - 1.2e-09 37.8 0.0 1.9e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain CMAS PF02353.20 gi|126179898|ref|YP_001047863.1| - 7.7e-08 32.0 0.0 1.1e-07 31.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|126179898|ref|YP_001047863.1| - 1.4e-07 31.1 0.0 2.5e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.19 gi|126179898|ref|YP_001047863.1| - 0.0003 20.6 0.0 0.00044 20.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|126179898|ref|YP_001047863.1| - 0.00054 19.1 0.0 0.00074 18.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase TehB PF03848.14 gi|126179898|ref|YP_001047863.1| - 0.00068 19.1 0.0 0.00089 18.7 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.11 gi|126179898|ref|YP_001047863.1| - 0.0011 18.6 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) DREV PF05219.12 gi|126179898|ref|YP_001047863.1| - 0.0012 18.0 0.0 0.0017 17.5 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_29 PF03141.16 gi|126179898|ref|YP_001047863.1| - 0.0015 17.2 0.0 0.0019 16.8 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase PrmA PF06325.13 gi|126179898|ref|YP_001047863.1| - 0.002 17.6 0.0 0.0028 17.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.19 gi|126179898|ref|YP_001047863.1| - 0.0076 16.4 0.0 0.0092 16.1 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase MetW PF07021.12 gi|126179898|ref|YP_001047863.1| - 0.04 13.5 0.0 0.072 12.7 0.0 1.5 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW DOT1 PF08123.13 gi|126179898|ref|YP_001047863.1| - 0.058 12.9 0.0 0.09 12.3 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_32 PF13679.6 gi|126179898|ref|YP_001047863.1| - 0.078 13.0 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_8 PF05148.15 gi|126179898|ref|YP_001047863.1| - 0.19 11.6 0.0 1.2 8.9 0.0 2.0 1 1 0 1 1 1 0 Hypothetical methyltransferase CarboxypepD_reg PF13620.6 gi|126179899|ref|YP_001047864.1| - 0.0031 17.8 0.3 0.0099 16.1 0.3 2.0 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain fn3_3 PF14686.6 gi|126179899|ref|YP_001047864.1| - 0.0044 16.8 1.1 0.0098 15.7 0.2 2.1 2 0 0 2 2 2 1 Polysaccharide lyase family 4, domain II DUF2141 PF09912.9 gi|126179899|ref|YP_001047864.1| - 0.054 13.4 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2141) MTS PF05175.14 gi|126179900|ref|YP_001047865.1| - 3e-07 30.1 0.0 4.2e-05 23.2 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|126179900|ref|YP_001047865.1| - 0.00022 21.1 0.0 0.00076 19.3 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126179900|ref|YP_001047865.1| - 0.00056 20.5 0.2 0.0048 17.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.19 gi|126179900|ref|YP_001047865.1| - 0.00056 19.7 0.0 0.00088 19.1 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|126179900|ref|YP_001047865.1| - 0.00059 20.5 0.0 0.0018 18.9 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain UPF0146 PF03686.13 gi|126179900|ref|YP_001047865.1| - 0.00068 19.5 0.0 0.0013 18.6 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) RrnaAD PF00398.20 gi|126179900|ref|YP_001047865.1| - 0.0056 15.8 0.0 0.0077 15.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.7 gi|126179900|ref|YP_001047865.1| - 0.0076 16.2 0.0 0.1 12.6 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|126179900|ref|YP_001047865.1| - 0.014 14.8 0.1 0.02 14.3 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MinC_C PF03775.16 gi|126179900|ref|YP_001047865.1| - 0.051 13.6 1.3 0.082 12.9 1.3 1.2 1 0 0 1 1 1 0 Septum formation inhibitor MinC, C-terminal domain Methyltransf_31 PF13847.6 gi|126179900|ref|YP_001047865.1| - 0.077 12.8 0.0 0.13 12.0 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|126179900|ref|YP_001047865.1| - 0.14 11.8 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein RrnaAD PF00398.20 gi|126179901|ref|YP_001047866.1| - 4.6e-46 157.0 0.0 5.4e-46 156.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|126179901|ref|YP_001047866.1| - 3.8e-06 27.5 0.0 6.5e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|126179901|ref|YP_001047866.1| - 9.5e-05 22.3 0.0 0.00014 21.7 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126179901|ref|YP_001047866.1| - 0.00028 21.5 0.0 0.00055 20.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126179901|ref|YP_001047866.1| - 0.021 14.6 0.0 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126179901|ref|YP_001047866.1| - 0.023 15.4 0.0 0.04 14.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain UPF0146 PF03686.13 gi|126179901|ref|YP_001047866.1| - 0.041 13.8 0.2 0.073 13.0 0.2 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) MTS PF05175.14 gi|126179901|ref|YP_001047866.1| - 0.12 11.9 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain PCMT PF01135.19 gi|126179901|ref|YP_001047866.1| - 0.13 12.0 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Spermine_synth PF01564.17 gi|126179901|ref|YP_001047866.1| - 0.17 11.2 0.1 0.25 10.7 0.1 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase domain DUF655 PF04919.12 gi|126179902|ref|YP_001047867.1| - 1.2e-67 227.3 0.4 1.4e-67 227.1 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|126179902|ref|YP_001047867.1| - 0.0043 17.3 0.0 0.011 16.0 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.16 gi|126179903|ref|YP_001047868.1| - 2.6e-09 37.4 3.1 2.8e-09 37.4 3.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 Peptidase_M32 PF02074.15 gi|126179903|ref|YP_001047868.1| - 0.051 12.4 2.3 0.061 12.1 2.3 1.0 1 0 0 1 1 1 0 Carboxypeptidase Taq (M32) metallopeptidase FumaraseC_C PF10415.9 gi|126179903|ref|YP_001047868.1| - 0.056 13.9 4.4 0.11 12.9 0.1 2.8 2 1 1 3 3 3 0 Fumarase C C-terminus HHH PF00633.23 gi|126179903|ref|YP_001047868.1| - 2.1 8.4 4.4 3.4 7.7 0.0 3.0 4 0 0 4 4 4 0 Helix-hairpin-helix motif Ribosomal_L21e PF01157.18 gi|126179904|ref|YP_001047869.1| - 5.4e-37 125.7 3.3 5.9e-37 125.6 3.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e SH3_12 PF18129.1 gi|126179904|ref|YP_001047869.1| - 0.11 12.6 1.0 0.23 11.6 1.1 1.5 1 1 0 1 1 1 0 Xrn1 SH3-like domain THUMP PF02926.17 gi|126179905|ref|YP_001047870.1| - 2.1e-09 37.6 0.0 5e-09 36.4 0.0 1.7 2 0 0 2 2 2 1 THUMP domain Methyltrn_RNA_2 PF04013.12 gi|126179906|ref|YP_001047871.1| - 3.6e-52 177.0 0.0 4e-52 176.8 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase SRP54 PF00448.22 gi|126179907|ref|YP_001047872.1| - 1e-67 227.6 0.0 1.7e-67 226.8 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|126179907|ref|YP_001047872.1| - 6.6e-29 100.5 0.1 2.1e-28 98.8 0.1 1.9 1 0 0 1 1 1 1 Signal peptide binding domain SRP54_N PF02881.19 gi|126179907|ref|YP_001047872.1| - 3e-17 62.6 2.0 4.1e-17 62.2 0.6 2.1 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|126179907|ref|YP_001047872.1| - 1.9e-06 27.9 0.0 8.9e-06 25.8 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 gi|126179907|ref|YP_001047872.1| - 3.3e-05 23.3 0.3 0.00015 21.2 0.0 2.2 3 0 0 3 3 3 1 Zeta toxin APS_kinase PF01583.20 gi|126179907|ref|YP_001047872.1| - 0.00049 20.0 0.2 0.0014 18.5 0.0 1.8 2 0 0 2 2 2 1 Adenylylsulphate kinase MobB PF03205.14 gi|126179907|ref|YP_001047872.1| - 0.00099 19.0 0.1 0.0028 17.6 0.1 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|126179907|ref|YP_001047872.1| - 0.001 19.3 0.0 0.0057 16.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|126179907|ref|YP_001047872.1| - 0.001 18.1 0.3 0.0022 17.1 0.0 1.6 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|126179907|ref|YP_001047872.1| - 0.0022 18.6 0.9 0.053 14.1 0.9 2.6 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|126179907|ref|YP_001047872.1| - 0.0041 16.7 0.3 0.041 13.5 0.3 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ParA PF10609.9 gi|126179907|ref|YP_001047872.1| - 0.0048 16.4 0.0 0.0084 15.6 0.0 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_16 PF13191.6 gi|126179907|ref|YP_001047872.1| - 0.0061 17.0 0.4 0.022 15.1 0.0 2.2 3 1 0 3 3 2 1 AAA ATPase domain 6PF2K PF01591.18 gi|126179907|ref|YP_001047872.1| - 0.0076 15.6 0.0 0.016 14.5 0.0 1.6 2 0 0 2 2 1 1 6-phosphofructo-2-kinase Thymidylate_kin PF02223.17 gi|126179907|ref|YP_001047872.1| - 0.012 15.3 0.1 0.034 13.8 0.1 1.7 1 0 0 1 1 1 0 Thymidylate kinase KTI12 PF08433.10 gi|126179907|ref|YP_001047872.1| - 0.012 15.0 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NTPase_1 PF03266.15 gi|126179907|ref|YP_001047872.1| - 0.014 15.3 0.1 0.043 13.7 0.1 1.8 1 0 0 1 1 1 0 NTPase TrwB_AAD_bind PF10412.9 gi|126179907|ref|YP_001047872.1| - 0.016 14.1 0.1 0.03 13.3 0.1 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ATP_bind_1 PF03029.17 gi|126179907|ref|YP_001047872.1| - 0.021 14.6 0.1 0.16 11.7 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_31 PF13614.6 gi|126179907|ref|YP_001047872.1| - 0.025 14.5 0.3 0.27 11.1 0.1 2.2 1 1 0 2 2 2 0 AAA domain AAA_26 PF13500.6 gi|126179907|ref|YP_001047872.1| - 0.034 14.0 0.0 0.068 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain LpxK PF02606.14 gi|126179907|ref|YP_001047872.1| - 0.039 13.0 0.1 0.072 12.2 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase ArsA_ATPase PF02374.15 gi|126179907|ref|YP_001047872.1| - 0.04 13.1 1.0 3.1 6.9 0.1 2.5 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_24 PF13479.6 gi|126179907|ref|YP_001047872.1| - 0.044 13.5 0.0 0.41 10.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|126179907|ref|YP_001047872.1| - 0.056 13.6 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain PFOR_II PF17147.4 gi|126179907|ref|YP_001047872.1| - 0.064 13.6 0.3 1.7 9.0 0.0 2.8 3 0 0 3 3 2 0 Pyruvate:ferredoxin oxidoreductase core domain II AAA_19 PF13245.6 gi|126179907|ref|YP_001047872.1| - 0.095 13.0 0.1 0.23 11.8 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.6 gi|126179907|ref|YP_001047872.1| - 0.099 12.4 0.5 0.25 11.0 0.1 1.9 2 0 0 2 2 1 0 AAA domain Glyco_trans_4_4 PF13579.6 gi|126179907|ref|YP_001047872.1| - 0.1 13.1 0.1 0.68 10.4 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain AAA_17 PF13207.6 gi|126179907|ref|YP_001047872.1| - 0.12 12.8 0.1 3.9 7.9 0.1 2.7 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|126179908|ref|YP_001047873.1| - 1.4e-66 223.9 1.0 1.8e-66 223.5 1.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|126179908|ref|YP_001047873.1| - 1.8e-08 34.5 3.0 1.9e-08 34.4 1.3 2.0 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.12 gi|126179908|ref|YP_001047873.1| - 2.5e-05 23.7 0.2 4.9e-05 22.7 0.1 1.5 1 1 0 1 1 1 1 Zeta toxin AAA_17 PF13207.6 gi|126179908|ref|YP_001047873.1| - 3e-05 24.4 0.5 5.3e-05 23.7 0.1 1.6 2 0 0 2 2 1 1 AAA domain AAA_30 PF13604.6 gi|126179908|ref|YP_001047873.1| - 0.00025 20.8 1.7 0.00064 19.5 1.7 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|126179908|ref|YP_001047873.1| - 0.00036 21.0 0.3 0.0011 19.4 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain APS_kinase PF01583.20 gi|126179908|ref|YP_001047873.1| - 0.0005 20.0 0.1 0.00084 19.3 0.1 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase LytR_C PF13399.6 gi|126179908|ref|YP_001047873.1| - 0.00074 20.5 0.9 0.0024 18.8 0.9 1.9 1 0 0 1 1 1 1 LytR cell envelope-related transcriptional attenuator AAA_33 PF13671.6 gi|126179908|ref|YP_001047873.1| - 0.0011 19.2 0.1 0.0018 18.4 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|126179908|ref|YP_001047873.1| - 0.0016 18.9 0.2 0.0039 17.6 0.2 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|126179908|ref|YP_001047873.1| - 0.0032 17.7 1.2 0.014 15.7 1.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|126179908|ref|YP_001047873.1| - 0.0035 17.1 0.1 0.005 16.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|126179908|ref|YP_001047873.1| - 0.0038 17.6 0.2 0.0071 16.7 0.2 1.4 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|126179908|ref|YP_001047873.1| - 0.0056 15.7 0.6 0.011 14.8 0.6 1.6 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB KdpD PF02702.17 gi|126179908|ref|YP_001047873.1| - 0.0062 16.0 0.5 0.018 14.5 0.4 1.8 1 1 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain Thymidylate_kin PF02223.17 gi|126179908|ref|YP_001047873.1| - 0.0064 16.2 0.1 0.059 13.1 0.1 2.4 2 0 0 2 2 2 1 Thymidylate kinase cobW PF02492.19 gi|126179908|ref|YP_001047873.1| - 0.0069 16.0 1.0 0.015 14.9 1.0 1.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 gi|126179908|ref|YP_001047873.1| - 0.008 16.1 2.7 0.021 14.8 2.7 1.9 1 1 0 1 1 1 1 NTPase T2SSE PF00437.20 gi|126179908|ref|YP_001047873.1| - 0.027 13.5 0.0 0.049 12.7 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein CbiA PF01656.23 gi|126179908|ref|YP_001047873.1| - 0.035 14.2 2.6 0.051 13.6 1.4 2.1 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_7 PF12775.7 gi|126179908|ref|YP_001047873.1| - 0.047 13.2 0.0 0.085 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region 6PF2K PF01591.18 gi|126179908|ref|YP_001047873.1| - 0.079 12.3 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_22 PF13401.6 gi|126179908|ref|YP_001047873.1| - 0.13 12.5 0.4 0.52 10.6 0.4 2.0 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|126179908|ref|YP_001047873.1| - 0.14 11.4 0.2 0.19 10.9 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DAP3 PF10236.9 gi|126179908|ref|YP_001047873.1| - 0.2 10.8 0.1 0.36 10.0 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 Prefoldin PF02996.17 gi|126179909|ref|YP_001047874.1| - 7.5e-22 77.5 0.2 9.2e-22 77.2 0.2 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|126179909|ref|YP_001047874.1| - 0.00024 21.0 0.5 0.11 12.4 0.4 2.1 2 0 0 2 2 2 2 Prefoldin subunit SlyX PF04102.12 gi|126179909|ref|YP_001047874.1| - 0.0032 18.1 6.6 0.99 10.1 2.2 2.3 2 0 0 2 2 2 2 SlyX DHR10 PF18595.1 gi|126179909|ref|YP_001047874.1| - 0.013 15.5 3.8 0.16 12.0 0.1 2.2 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain FlaC_arch PF05377.11 gi|126179909|ref|YP_001047874.1| - 0.23 11.9 1.1 7.6 7.0 0.1 2.3 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Spc7 PF08317.11 gi|126179909|ref|YP_001047874.1| - 0.36 9.7 2.9 2.8 6.7 0.5 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein HisKA_3 PF07730.13 gi|126179909|ref|YP_001047874.1| - 1.2 9.7 8.1 2.5 8.7 1.2 2.6 2 1 0 2 2 2 0 Histidine kinase Ribosomal_L18A PF01775.17 gi|126179910|ref|YP_001047875.1| - 1.4e-10 41.3 0.1 1.5e-10 41.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A TRIQK PF15168.6 gi|126179910|ref|YP_001047875.1| - 0.029 14.3 0.1 0.032 14.1 0.1 1.1 1 0 0 1 1 1 0 Triple QxxK/R motif-containing protein family eIF-6 PF01912.18 gi|126179911|ref|YP_001047876.1| - 2e-67 226.4 0.5 2.3e-67 226.2 0.5 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|126179912|ref|YP_001047877.1| - 5.7e-13 48.9 0.7 6.8e-13 48.7 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.20 gi|126179913|ref|YP_001047878.1| - 2.8e-22 78.0 8.5 3.4e-22 77.8 8.5 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Asn_synthase PF00733.21 gi|126179914|ref|YP_001047879.1| - 0.0028 17.4 0.0 0.0035 17.0 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.14 gi|126179914|ref|YP_001047879.1| - 0.0037 16.9 0.0 2.4 7.7 0.0 2.1 2 0 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) Diphthami_syn_2 PF01902.17 gi|126179914|ref|YP_001047879.1| - 0.0063 16.1 0.0 0.019 14.5 0.0 1.7 1 1 1 2 2 2 1 Diphthamide synthase ATP_bind_3 PF01171.20 gi|126179914|ref|YP_001047879.1| - 0.046 13.5 0.0 0.96 9.2 0.0 2.3 1 1 0 2 2 2 0 PP-loop family QueC PF06508.13 gi|126179914|ref|YP_001047879.1| - 0.049 13.1 0.0 0.35 10.3 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC dsDNA_bind PF01984.20 gi|126179915|ref|YP_001047880.1| - 4.5e-29 101.0 16.8 5e-29 100.8 16.8 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain FemAB_like PF04339.12 gi|126179915|ref|YP_001047880.1| - 0.089 11.9 1.3 0.1 11.7 1.3 1.1 1 0 0 1 1 1 0 Peptidogalycan biosysnthesis/recognition DUF2336 PF10098.9 gi|126179915|ref|YP_001047880.1| - 0.089 12.2 10.8 0.1 12.0 10.8 1.0 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2336) FAA_hydrolase_N PF09298.11 gi|126179915|ref|YP_001047880.1| - 0.73 10.1 4.7 1.2 9.3 2.0 2.0 1 1 1 2 2 2 0 Fumarylacetoacetase N-terminal MCPVI PF02993.14 gi|126179915|ref|YP_001047880.1| - 1.1 9.0 4.4 3.7 7.3 4.4 1.8 1 1 0 1 1 1 0 Minor capsid protein VI SelB-wing_2 PF09106.11 gi|126179915|ref|YP_001047880.1| - 1.2 9.4 6.6 28 5.0 6.1 2.6 1 1 0 1 1 1 0 Elongation factor SelB, winged helix DUF945 PF06097.11 gi|126179915|ref|YP_001047880.1| - 1.2 8.1 7.1 2.3 7.2 7.1 1.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF945) SurA_N_2 PF13623.6 gi|126179915|ref|YP_001047880.1| - 3.7 7.4 11.9 23 4.8 7.3 2.3 1 1 0 2 2 2 0 SurA N-terminal domain Ribosomal_S19e PF01090.19 gi|126179916|ref|YP_001047881.1| - 1.7e-55 186.5 0.0 1.9e-55 186.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e CRS1_YhbY PF01985.21 gi|126179917|ref|YP_001047882.1| - 7.5e-12 45.2 0.2 9.2e-12 45.0 0.2 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Rpr2 PF04032.16 gi|126179918|ref|YP_001047883.1| - 3.3e-15 56.2 0.2 4.2e-15 55.8 0.2 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-Sec23_Sec24 PF04810.15 gi|126179918|ref|YP_001047883.1| - 0.0037 17.3 0.6 0.0074 16.3 0.6 1.4 1 0 0 1 1 1 1 Sec23/Sec24 zinc finger DZR PF12773.7 gi|126179918|ref|YP_001047883.1| - 0.011 15.7 0.2 0.018 15.0 0.2 1.5 1 1 0 1 1 1 0 Double zinc ribbon DUF1411 PF07199.11 gi|126179918|ref|YP_001047883.1| - 0.27 10.9 0.0 0.35 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1411) Formyl_trans_N PF00551.19 gi|126179919|ref|YP_001047884.1| - 4.9e-56 189.3 0.0 5.6e-56 189.1 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase Peripla_BP_4 PF13407.6 gi|126179919|ref|YP_001047884.1| - 0.0047 16.5 0.3 0.0069 16.0 0.3 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain DUF21 PF01595.20 gi|126179920|ref|YP_001047885.1| - 4.7e-51 173.0 1.5 6.7e-51 172.5 1.5 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|126179920|ref|YP_001047885.1| - 3.2e-21 75.1 2.6 5.4e-21 74.4 0.3 2.4 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|126179920|ref|YP_001047885.1| - 1.1e-14 54.6 0.6 2.4e-06 27.9 0.2 2.7 2 0 0 2 2 2 2 CBS domain AP_endonuc_2 PF01261.24 gi|126179921|ref|YP_001047886.1| - 5.9e-20 71.6 0.2 8.4e-20 71.1 0.2 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PdxJ PF03740.13 gi|126179921|ref|YP_001047886.1| - 0.12 11.5 0.1 0.16 11.1 0.1 1.2 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthesis protein PdxJ Exonuc_VII_L PF02601.15 gi|126179922|ref|YP_001047887.1| - 5.5e-84 282.3 0.5 7.2e-73 245.8 0.2 2.1 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 gi|126179922|ref|YP_001047887.1| - 3.1e-27 94.6 0.0 5.7e-27 93.8 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|126179922|ref|YP_001047887.1| - 5.3e-05 23.1 0.0 0.00012 22.0 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Citrate_synt PF00285.21 gi|126179922|ref|YP_001047887.1| - 0.048 12.7 0.0 0.73 8.8 0.0 2.1 2 0 0 2 2 2 0 Citrate synthase, C-terminal domain Exonuc_VII_S PF02609.16 gi|126179923|ref|YP_001047888.1| - 3.6e-19 68.6 3.7 3.9e-19 68.4 3.7 1.0 1 0 0 1 1 1 1 Exonuclease VII small subunit PAS_4 PF08448.10 gi|126179924|ref|YP_001047889.1| - 3.2e-41 140.0 4.3 4.6e-16 59.1 0.4 3.7 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|126179924|ref|YP_001047889.1| - 5.4e-37 126.2 0.0 3.3e-15 56.1 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|126179924|ref|YP_001047889.1| - 3.9e-24 84.9 0.0 4.4e-08 33.3 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|126179924|ref|YP_001047889.1| - 1.3e-19 70.2 0.0 1.7e-10 41.0 0.0 3.6 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|126179924|ref|YP_001047889.1| - 1.4e-16 60.1 0.2 2.1e-06 27.6 0.1 4.0 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|126179924|ref|YP_001047889.1| - 7.7e-11 42.5 0.0 1.4e-10 41.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|126179924|ref|YP_001047889.1| - 0.00028 20.5 0.3 0.00068 19.3 0.3 1.5 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_7 PF12860.7 gi|126179924|ref|YP_001047889.1| - 0.0035 17.5 0.0 0.038 14.2 0.0 2.9 2 1 0 2 2 2 1 PAS fold MLTR_LBD PF17765.1 gi|126179924|ref|YP_001047889.1| - 0.019 15.1 1.1 0.86 9.7 0.0 2.9 3 0 0 3 3 3 0 MmyB-like transcription regulator ligand binding domain DUF5054 PF16477.5 gi|126179924|ref|YP_001047889.1| - 0.11 12.3 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5054) DUF371 PF04027.13 gi|126179925|ref|YP_001047890.1| - 2e-48 163.7 0.0 2.3e-48 163.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) PRIMA1 PF16101.5 gi|126179926|ref|YP_001047891.1| - 0.003 17.6 0.1 0.0039 17.2 0.1 1.2 1 0 0 1 1 1 1 Proline-rich membrane anchor 1 DUF2387 PF09526.10 gi|126179926|ref|YP_001047891.1| - 0.63 10.2 6.2 1.1 9.4 6.2 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Ribosomal_S27e PF01667.17 gi|126179926|ref|YP_001047891.1| - 1.2 8.9 5.9 2 8.2 5.9 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 Thioredoxin PF00085.20 gi|126179927|ref|YP_001047892.1| - 8.6e-09 35.3 0.0 1e-08 35.1 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|126179927|ref|YP_001047892.1| - 1.9e-07 31.0 0.1 2.2e-07 30.8 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_2 PF13098.6 gi|126179927|ref|YP_001047892.1| - 2.9e-07 30.9 0.1 1.5e-06 28.6 0.1 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain DUF836 PF05768.14 gi|126179927|ref|YP_001047892.1| - 1.7e-05 25.1 0.0 2e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) TraF PF13728.6 gi|126179927|ref|YP_001047892.1| - 0.0038 17.1 0.0 0.0044 16.9 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein KaiB PF07689.12 gi|126179927|ref|YP_001047892.1| - 0.034 13.9 0.0 0.048 13.4 0.0 1.3 1 0 0 1 1 1 0 KaiB domain ATP-grasp_2 PF08442.10 gi|126179927|ref|YP_001047892.1| - 0.077 12.5 0.0 0.079 12.5 0.0 1.1 1 0 0 1 1 1 0 ATP-grasp domain Thioredoxin_8 PF13905.6 gi|126179927|ref|YP_001047892.1| - 0.16 12.3 0.0 9.3 6.7 0.0 2.1 1 1 1 2 2 2 0 Thioredoxin-like HSP20 PF00011.21 gi|126179929|ref|YP_001047894.1| - 9.2e-15 54.6 0.1 1.1e-14 54.4 0.1 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|126179929|ref|YP_001047894.1| - 1e-08 34.6 0.2 1.5e-07 30.9 0.2 2.3 1 1 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|126179929|ref|YP_001047894.1| - 6.1e-05 23.2 0.1 0.0012 18.9 0.0 2.1 2 0 0 2 2 2 1 GvpH CS PF04969.16 gi|126179929|ref|YP_001047894.1| - 0.017 16.1 0.0 0.023 15.7 0.0 1.2 1 0 0 1 1 1 0 CS domain CBS PF00571.28 gi|126179930|ref|YP_001047895.1| - 4.6e-25 87.8 2.3 7.1e-13 48.8 0.2 2.4 2 0 0 2 2 2 2 CBS domain ParBc PF02195.18 gi|126179930|ref|YP_001047895.1| - 1.2e-13 51.1 0.2 6.4e-13 48.8 0.1 2.2 3 0 0 3 3 3 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|126179930|ref|YP_001047895.1| - 0.032 14.3 0.0 0.18 11.9 0.0 2.0 1 1 0 1 1 1 0 Putative ParB-like nuclease TyrRSs_C PF16714.5 gi|126179931|ref|YP_001047896.1| - 0.13 12.1 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Tyrosyl-tRNA synthetase C-terminal domain DUF4263 PF14082.6 gi|126179932|ref|YP_001047897.1| - 0.21 11.8 0.0 0.3 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4263) Disaggr_assoc PF08480.10 gi|126179933|ref|YP_001047898.1| - 0.019 14.8 1.8 0.043 13.7 1.8 1.5 1 0 0 1 1 1 0 Disaggregatase related Binary_toxB PF03495.14 gi|126179933|ref|YP_001047898.1| - 0.02 15.1 16.8 0.14 12.3 0.3 4.7 3 2 1 4 4 4 0 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain NTP_transferase PF00483.23 gi|126179936|ref|YP_001047901.1| - 5.2e-51 173.6 0.0 1.5e-50 172.1 0.0 1.7 2 0 0 2 2 2 1 Nucleotidyl transferase Hexapep PF00132.24 gi|126179936|ref|YP_001047901.1| - 2.2e-15 55.7 22.4 8.5e-06 25.3 4.4 5.1 1 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|126179936|ref|YP_001047901.1| - 1.1e-11 45.4 0.0 1.6e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Fucokinase PF07959.12 gi|126179936|ref|YP_001047901.1| - 0.00049 19.2 2.0 0.13 11.1 0.1 2.2 1 1 1 2 2 2 2 L-fucokinase Hexapep_2 PF14602.6 gi|126179936|ref|YP_001047901.1| - 0.00077 19.2 21.5 0.19 11.5 1.5 5.2 3 2 1 5 5 5 2 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|126179936|ref|YP_001047901.1| - 0.047 11.8 2.4 0.071 11.2 2.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Bactofilin PF04519.13 gi|126179936|ref|YP_001047901.1| - 0.08 13.3 5.7 0.074 13.4 2.7 2.2 1 1 1 2 2 2 0 Polymer-forming cytoskeletal CxxCxxCC PF03692.15 gi|126179937|ref|YP_001047902.1| - 0.0026 18.4 0.2 0.0038 17.9 0.2 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain RHH_1 PF01402.21 gi|126179939|ref|YP_001047904.1| - 0.0095 15.8 0.0 0.022 14.7 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Helo_like_N PF17111.5 gi|126179939|ref|YP_001047904.1| - 0.015 14.7 0.0 0.02 14.3 0.0 1.1 1 0 0 1 1 1 0 Fungal N-terminal domain of STAND proteins SUI1 PF01253.22 gi|126179940|ref|YP_001047905.1| - 2.1e-23 82.6 0.0 2.7e-23 82.3 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.15 gi|126179940|ref|YP_001047905.1| - 0.0025 17.5 0.4 0.0036 17.1 0.4 1.2 1 0 0 1 1 1 1 DTW domain Img2 PF05046.14 gi|126179940|ref|YP_001047905.1| - 0.007 16.6 0.1 0.013 15.8 0.1 1.6 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) Ribonuc_red_lgC PF02867.15 gi|126179941|ref|YP_001047906.1| - 1.1e-138 463.1 0.0 2.9e-104 349.5 0.0 2.1 1 1 1 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|126179941|ref|YP_001047906.1| - 2.6e-12 46.6 0.0 4.9e-12 45.7 0.0 1.5 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain NRDD PF13597.6 gi|126179941|ref|YP_001047906.1| - 0.012 14.4 0.0 0.017 13.9 0.0 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase GATase_3 PF07685.14 gi|126179942|ref|YP_001047907.1| - 3.9e-48 163.7 0.0 5.5e-48 163.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|126179942|ref|YP_001047907.1| - 2e-20 73.5 0.0 1.1e-19 71.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|126179942|ref|YP_001047907.1| - 4.7e-20 72.0 0.0 7.4e-20 71.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase PF00117.28 gi|126179942|ref|YP_001047907.1| - 0.00079 19.2 0.0 0.0018 18.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|126179942|ref|YP_001047907.1| - 0.022 14.6 0.0 0.044 13.6 0.0 1.5 1 0 0 1 1 1 0 DJ-1/PfpI family DUF1611 PF07755.11 gi|126179942|ref|YP_001047907.1| - 0.029 13.7 0.0 0.097 11.9 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain Peptidase_S51 PF03575.17 gi|126179942|ref|YP_001047907.1| - 0.033 13.8 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 Peptidase family S51 GrpB PF04229.14 gi|126179943|ref|YP_001047908.1| - 2.5e-49 167.6 0.0 2.8e-49 167.4 0.0 1.0 1 0 0 1 1 1 1 GrpB protein T2SSF PF00482.23 gi|126179944|ref|YP_001047909.1| - 6.9e-19 68.0 0.0 6.9e-19 68.0 0.0 2.1 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F T2SSF PF00482.23 gi|126179945|ref|YP_001047910.1| - 5.1e-18 65.2 0.4 5.1e-18 65.2 0.4 2.8 4 0 0 4 4 4 1 Type II secretion system (T2SS), protein F PEPcase_2 PF14010.6 gi|126179945|ref|YP_001047910.1| - 0.0016 17.1 0.0 0.0022 16.6 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase DUF2207 PF09972.9 gi|126179945|ref|YP_001047910.1| - 1.3 7.7 7.9 0.12 11.2 0.2 2.1 1 1 0 2 2 2 0 Predicted membrane protein (DUF2207) DUF1129 PF06570.11 gi|126179945|ref|YP_001047910.1| - 1.5 8.2 5.8 1.5 8.3 1.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) T2SSE PF00437.20 gi|126179946|ref|YP_001047911.1| - 8.6e-49 166.0 0.0 1.3e-48 165.4 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|126179946|ref|YP_001047911.1| - 0.024 14.3 0.0 0.063 13.0 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain CarboxypepD_reg PF13620.6 gi|126179947|ref|YP_001047912.1| - 0.0024 18.1 0.0 0.016 15.5 0.0 2.0 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|126179947|ref|YP_001047912.1| - 0.075 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) Arc_PepC_II PF06847.11 gi|126179948|ref|YP_001047913.1| - 3e-23 82.1 0.0 6.2e-23 81.1 0.0 1.5 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|126179948|ref|YP_001047913.1| - 1e-08 35.5 4.3 1e-08 35.5 4.3 2.0 2 1 1 3 3 3 1 Type IV leader peptidase family DUF3488 PF11992.8 gi|126179948|ref|YP_001047913.1| - 0.98 8.3 6.9 1.3 7.9 6.9 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3488) DUF3040 PF11239.8 gi|126179948|ref|YP_001047913.1| - 1.6 9.1 4.3 1.1 9.6 0.2 2.7 2 2 1 3 3 3 0 Protein of unknown function (DUF3040) FA_desaturase PF00487.24 gi|126179948|ref|YP_001047913.1| - 2.5 7.9 10.8 15 5.3 6.9 2.3 2 1 0 2 2 2 0 Fatty acid desaturase PRA-CH PF01502.18 gi|126179949|ref|YP_001047914.1| - 6.1e-35 118.9 0.7 7.7e-35 118.6 0.7 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase DUF3239 PF11580.8 gi|126179949|ref|YP_001047914.1| - 0.016 15.5 0.0 0.02 15.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3239) Thyroglobulin_1 PF00086.18 gi|126179949|ref|YP_001047914.1| - 0.065 12.9 0.1 0.093 12.4 0.1 1.3 1 0 0 1 1 1 0 Thyroglobulin type-1 repeat T2SSE PF00437.20 gi|126179950|ref|YP_001047915.1| - 9.3e-13 47.9 0.1 1.7e-12 47.0 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_14 PF13173.6 gi|126179950|ref|YP_001047915.1| - 1.8e-05 24.8 0.0 3.3e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|126179950|ref|YP_001047915.1| - 3.3e-05 23.9 0.0 7e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|126179950|ref|YP_001047915.1| - 0.00015 22.2 0.0 0.0003 21.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|126179950|ref|YP_001047915.1| - 0.00023 21.6 0.0 0.00047 20.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|126179950|ref|YP_001047915.1| - 0.00061 19.6 0.0 0.0012 18.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|126179950|ref|YP_001047915.1| - 0.0007 20.1 0.0 0.0017 18.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|126179950|ref|YP_001047915.1| - 0.00085 19.3 0.1 0.006 16.5 0.0 2.5 2 1 1 3 3 2 1 NTPase AAA_25 PF13481.6 gi|126179950|ref|YP_001047915.1| - 0.0011 18.6 0.1 0.0029 17.2 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|126179950|ref|YP_001047915.1| - 0.0018 18.5 0.0 0.005 17.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 gi|126179950|ref|YP_001047915.1| - 0.002 17.9 0.0 0.0033 17.2 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 gi|126179950|ref|YP_001047915.1| - 0.0023 17.9 0.0 0.005 16.8 0.0 1.5 1 0 0 1 1 1 1 NACHT domain Mg_chelatase PF01078.21 gi|126179950|ref|YP_001047915.1| - 0.0033 16.8 0.0 0.0058 16.0 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|126179950|ref|YP_001047915.1| - 0.005 17.1 0.0 0.013 15.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|126179950|ref|YP_001047915.1| - 0.0064 16.0 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region KH_5 PF13184.6 gi|126179950|ref|YP_001047915.1| - 0.0069 16.4 0.4 0.021 14.9 0.4 1.8 1 0 0 1 1 1 1 NusA-like KH domain PIN PF01850.21 gi|126179950|ref|YP_001047915.1| - 0.0088 16.5 0.0 0.031 14.8 0.0 2.0 1 1 0 1 1 1 1 PIN domain RuvB_N PF05496.12 gi|126179950|ref|YP_001047915.1| - 0.01 15.6 0.0 0.024 14.4 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain KH_1 PF00013.29 gi|126179950|ref|YP_001047915.1| - 0.011 15.5 0.7 0.035 13.9 0.4 2.0 2 0 0 2 2 1 0 KH domain AAA_30 PF13604.6 gi|126179950|ref|YP_001047915.1| - 0.012 15.3 0.0 0.029 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|126179950|ref|YP_001047915.1| - 0.014 14.6 0.1 0.041 13.1 0.0 1.7 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_24 PF13479.6 gi|126179950|ref|YP_001047915.1| - 0.015 15.0 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|126179950|ref|YP_001047915.1| - 0.015 15.5 0.0 0.034 14.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain KH_2 PF07650.17 gi|126179950|ref|YP_001047915.1| - 0.015 15.1 2.7 0.047 13.5 2.5 2.1 1 1 0 1 1 1 0 KH domain Zeta_toxin PF06414.12 gi|126179950|ref|YP_001047915.1| - 0.02 14.1 0.0 0.041 13.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Thymidylate_kin PF02223.17 gi|126179950|ref|YP_001047915.1| - 0.021 14.5 0.0 0.051 13.2 0.0 1.7 1 1 0 1 1 1 0 Thymidylate kinase RNA_helicase PF00910.22 gi|126179950|ref|YP_001047915.1| - 0.027 14.8 0.0 0.069 13.5 0.0 1.7 1 1 0 1 1 1 0 RNA helicase AAA_2 PF07724.14 gi|126179950|ref|YP_001047915.1| - 0.03 14.5 0.0 0.55 10.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_29 PF13555.6 gi|126179950|ref|YP_001047915.1| - 0.031 14.0 0.0 0.067 12.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain PIN_4 PF13638.6 gi|126179950|ref|YP_001047915.1| - 0.035 14.4 0.0 0.065 13.5 0.0 1.4 1 0 0 1 1 1 0 PIN domain AAA_11 PF13086.6 gi|126179950|ref|YP_001047915.1| - 0.04 13.7 0.0 0.068 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|126179950|ref|YP_001047915.1| - 0.062 13.1 0.0 0.12 12.1 0.0 1.6 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein ABC_tran PF00005.27 gi|126179950|ref|YP_001047915.1| - 0.063 13.8 0.0 0.18 12.3 0.0 1.8 1 0 0 1 1 1 0 ABC transporter TsaE PF02367.17 gi|126179950|ref|YP_001047915.1| - 0.078 13.0 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Rad17 PF03215.15 gi|126179950|ref|YP_001047915.1| - 0.089 12.7 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Parvo_NS1 PF01057.17 gi|126179950|ref|YP_001047915.1| - 0.11 11.5 0.1 0.24 10.5 0.0 1.5 2 0 0 2 2 1 0 Parvovirus non-structural protein NS1 KTI12 PF08433.10 gi|126179950|ref|YP_001047915.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 CbiA PF01656.23 gi|126179950|ref|YP_001047915.1| - 0.17 11.9 0.1 0.28 11.2 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Mur_ligase_M PF08245.12 gi|126179950|ref|YP_001047915.1| - 0.19 11.7 0.0 0.41 10.6 0.0 1.5 1 0 0 1 1 1 0 Mur ligase middle domain tRNA-synt_1 PF00133.22 gi|126179951|ref|YP_001047916.1| - 5.7e-54 183.4 0.0 5.5e-48 163.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|126179951|ref|YP_001047916.1| - 8.7e-23 80.7 2.3 5.5e-10 38.6 0.1 3.7 4 0 0 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|126179951|ref|YP_001047916.1| - 2.3e-19 69.8 0.0 4.8e-19 68.8 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|126179951|ref|YP_001047916.1| - 3.2e-07 30.0 0.0 0.013 14.8 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|126179951|ref|YP_001047916.1| - 4.7e-07 29.5 0.0 9.4e-07 28.5 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|126179951|ref|YP_001047916.1| - 0.00016 20.7 0.0 0.028 13.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) DUF1281 PF06924.11 gi|126179951|ref|YP_001047916.1| - 0.15 11.6 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1281) tRNA-synt_1b PF00579.25 gi|126179951|ref|YP_001047916.1| - 0.16 11.3 0.0 0.52 9.6 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) DUF5611 PF18446.1 gi|126179952|ref|YP_001047917.1| - 2e-32 112.1 0.1 2.3e-32 111.9 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) PAC2 PF09754.9 gi|126179953|ref|YP_001047918.1| - 8.3e-44 150.1 0.3 9.5e-44 149.9 0.3 1.0 1 0 0 1 1 1 1 PAC2 family DUF473 PF04322.12 gi|126179954|ref|YP_001047919.1| - 1.6e-40 137.6 0.0 1.9e-40 137.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) DUF1805 PF08827.11 gi|126179955|ref|YP_001047920.1| - 4.9e-24 84.4 0.1 7.1e-24 83.9 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) tRNA-synt_1g PF09334.11 gi|126179956|ref|YP_001047921.1| - 1.8e-148 494.5 0.0 2.1e-148 494.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|126179956|ref|YP_001047921.1| - 3.6e-26 91.1 0.0 7.1e-26 90.2 0.0 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|126179956|ref|YP_001047921.1| - 5.1e-17 61.4 0.1 6.9e-08 31.2 0.1 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|126179956|ref|YP_001047921.1| - 5.7e-14 52.2 0.0 1.2e-09 38.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|126179956|ref|YP_001047921.1| - 1.1e-09 38.4 0.0 3.8e-09 36.7 0.0 1.7 1 1 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|126179956|ref|YP_001047921.1| - 0.0074 15.2 0.0 1.7 7.5 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) TerY_C PF15616.6 gi|126179956|ref|YP_001047921.1| - 0.22 11.6 2.0 0.64 10.1 2.0 1.7 1 0 0 1 1 1 0 TerY-C metal binding domain DZR PF12773.7 gi|126179956|ref|YP_001047921.1| - 0.27 11.3 6.9 1.1 9.4 6.9 1.9 1 1 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|126179956|ref|YP_001047921.1| - 0.94 9.3 7.4 1.8 8.4 0.1 3.8 4 0 0 4 4 4 0 A2L zinc ribbon domain UPF0547 PF10571.9 gi|126179956|ref|YP_001047921.1| - 2.6 8.2 4.9 16 5.7 4.9 2.3 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 EccE PF11203.8 gi|126179957|ref|YP_001047922.1| - 0.14 12.5 0.3 0.37 11.2 0.1 1.8 2 0 0 2 2 2 0 Putative type VII ESX secretion system translocon, EccE DHHA1 PF02272.19 gi|126179958|ref|YP_001047923.1| - 0.009 16.4 0.0 0.015 15.7 0.0 1.4 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|126179958|ref|YP_001047923.1| - 0.072 13.3 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 DHH family DpnII-MboI PF18742.1 gi|126179959|ref|YP_001047924.1| - 6.2e-05 22.7 0.1 9.4e-05 22.1 0.1 1.3 1 0 0 1 1 1 1 REase_DpnII-MboI SfsA PF03749.13 gi|126179959|ref|YP_001047924.1| - 0.037 13.9 0.0 0.14 12.0 0.0 2.2 1 1 1 2 2 2 0 Sugar fermentation stimulation protein RE domain CdiA_C PF18451.1 gi|126179959|ref|YP_001047924.1| - 0.061 13.6 0.0 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 Contact-dependent growth inhibition CdiA C-terminal domain PRAI PF00697.22 gi|126179960|ref|YP_001047925.1| - 2.1e-22 79.9 0.0 2.6e-22 79.6 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMP-TENI PF02581.17 gi|126179960|ref|YP_001047925.1| - 0.016 14.6 0.0 0.031 13.6 0.0 1.6 1 0 0 1 1 1 0 Thiamine monophosphate synthase Fer4 PF00037.27 gi|126179962|ref|YP_001047927.1| - 1.1e-18 66.1 17.5 2.2e-09 36.7 5.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|126179962|ref|YP_001047927.1| - 3.6e-15 55.3 14.7 1.7e-07 31.0 3.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|126179962|ref|YP_001047927.1| - 4.7e-12 45.2 15.0 5.6e-06 26.1 4.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126179962|ref|YP_001047927.1| - 5.9e-12 45.6 10.9 6.8e-12 45.4 10.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126179962|ref|YP_001047927.1| - 6.7e-11 42.1 12.9 1.4e-10 41.1 13.0 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126179962|ref|YP_001047927.1| - 1.6e-10 41.4 12.2 2.8e-10 40.6 12.2 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126179962|ref|YP_001047927.1| - 2.1e-09 38.2 10.4 8.6e-05 23.4 1.6 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|126179962|ref|YP_001047927.1| - 6.9e-09 35.5 11.5 0.00036 20.8 2.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126179962|ref|YP_001047927.1| - 9.1e-08 32.1 12.6 0.00029 20.9 2.9 2.0 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126179962|ref|YP_001047927.1| - 1.7e-05 25.3 12.4 0.0026 18.3 1.3 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126179962|ref|YP_001047927.1| - 2.2e-05 25.1 19.6 0.011 16.6 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|126179962|ref|YP_001047927.1| - 8.5e-05 23.0 14.1 0.031 14.8 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|126179962|ref|YP_001047927.1| - 0.00024 21.8 13.3 0.075 13.8 3.7 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|126179962|ref|YP_001047927.1| - 0.00026 21.4 13.6 0.026 14.9 2.5 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|126179962|ref|YP_001047927.1| - 0.00089 19.4 11.7 0.027 14.7 12.0 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|126179962|ref|YP_001047927.1| - 0.0046 17.8 11.1 0.044 14.6 1.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Me-amine-dh_L PF02975.14 gi|126179962|ref|YP_001047927.1| - 1.1 9.7 11.8 1.6 9.3 2.4 2.0 1 1 1 2 2 2 0 Methylamine dehydrogenase, L chain Fer4_19 PF06902.11 gi|126179962|ref|YP_001047927.1| - 2.3 8.3 12.2 7.7e+02 0.3 12.2 3.5 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster PAS_4 PF08448.10 gi|126179963|ref|YP_001047928.1| - 9.4e-35 119.2 2.9 3.5e-15 56.2 0.1 3.9 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|126179963|ref|YP_001047928.1| - 1.6e-25 89.3 0.0 4e-12 46.3 0.0 3.5 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|126179963|ref|YP_001047928.1| - 8.6e-21 74.1 0.0 2.5e-08 33.9 0.0 4.2 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.26 gi|126179963|ref|YP_001047928.1| - 2.1e-19 70.1 0.0 8.5e-19 68.1 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|126179963|ref|YP_001047928.1| - 4.2e-13 49.8 1.4 1.1e-11 45.1 0.3 2.7 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|126179963|ref|YP_001047928.1| - 1.5e-11 44.0 0.6 4.4e-05 23.4 0.0 3.7 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.7 gi|126179963|ref|YP_001047928.1| - 3.9e-10 39.9 0.4 4e-06 27.0 0.0 5.0 5 2 0 5 5 5 1 PAS fold GAF_3 PF13492.6 gi|126179963|ref|YP_001047928.1| - 2.2e-09 37.8 0.0 1.8e-08 34.8 0.0 2.6 3 0 0 3 3 3 1 GAF domain GAF PF01590.26 gi|126179963|ref|YP_001047928.1| - 7.3e-09 36.4 0.0 3.1e-07 31.1 0.0 2.6 2 0 0 2 2 2 1 GAF domain HATPase_c_2 PF13581.6 gi|126179963|ref|YP_001047928.1| - 1.9e-05 24.6 0.0 0.00099 19.1 0.0 2.6 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_3 PF08447.12 gi|126179963|ref|YP_001047928.1| - 0.0003 21.0 0.0 0.059 13.7 0.0 3.2 3 0 0 3 3 3 1 PAS fold VWA_CoxE PF05762.14 gi|126179963|ref|YP_001047928.1| - 0.086 12.2 0.8 5.1 6.4 0.0 2.5 2 0 0 2 2 2 0 VWA domain containing CoxE-like protein HSP20 PF00011.21 gi|126179965|ref|YP_001047930.1| - 1.4e-10 41.2 0.0 1.8e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|126179965|ref|YP_001047930.1| - 1.8e-07 30.6 0.0 3e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|126179965|ref|YP_001047930.1| - 0.0023 18.0 0.1 0.011 15.8 0.2 1.8 2 0 0 2 2 2 1 GvpH Glycos_transf_1 PF00534.20 gi|126179966|ref|YP_001047931.1| - 1.9e-21 76.4 0.0 3e-21 75.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126179966|ref|YP_001047931.1| - 7.2e-13 49.1 0.0 1.2e-12 48.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|126179966|ref|YP_001047931.1| - 6.7e-05 23.2 0.0 0.00018 21.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Response_reg PF00072.24 gi|126179967|ref|YP_001047932.1| - 2.8e-17 62.9 0.0 3.3e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain FleQ PF06490.11 gi|126179967|ref|YP_001047932.1| - 0.00017 21.9 0.0 0.00023 21.5 0.0 1.2 1 0 0 1 1 1 1 Flagellar regulatory protein FleQ HATPase_c PF02518.26 gi|126179968|ref|YP_001047933.1| - 7.1e-26 90.9 0.0 1.7e-25 89.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|126179968|ref|YP_001047933.1| - 3.6e-13 49.7 0.0 7.4e-07 29.4 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|126179968|ref|YP_001047933.1| - 2.8e-11 43.7 0.1 2.5e-07 30.9 0.0 2.7 2 0 0 2 2 2 2 PAS fold HisKA PF00512.25 gi|126179968|ref|YP_001047933.1| - 1.2e-08 34.8 0.0 1.1e-06 28.6 0.0 2.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|126179968|ref|YP_001047933.1| - 1.8e-08 34.3 0.0 0.0012 18.8 0.0 2.8 3 0 0 3 3 3 2 PAS fold HATPase_c_3 PF13589.6 gi|126179968|ref|YP_001047933.1| - 0.00038 20.3 0.0 0.00076 19.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|126179968|ref|YP_001047933.1| - 0.013 15.8 0.0 7.2 7.0 0.0 2.6 2 0 0 2 2 2 0 PAS fold HATPase_c_2 PF13581.6 gi|126179968|ref|YP_001047933.1| - 0.042 13.8 0.0 0.44 10.5 0.0 2.3 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain PAS_2 PF08446.11 gi|126179968|ref|YP_001047933.1| - 0.13 12.9 0.0 0.68 10.6 0.0 2.0 2 0 0 2 2 2 0 PAS fold RibD_C PF01872.17 gi|126179969|ref|YP_001047934.1| - 1.4e-56 191.5 0.1 1.6e-56 191.3 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Glu_synthase PF01645.17 gi|126179971|ref|YP_001047936.1| - 4.7e-14 52.3 0.0 2.3e-11 43.5 0.0 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase Epimerase PF01370.21 gi|126179972|ref|YP_001047937.1| - 1.3e-51 175.4 0.1 3.6e-51 173.9 0.1 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|126179972|ref|YP_001047937.1| - 1.4e-43 149.6 0.0 7.3e-23 81.5 0.0 2.5 2 1 0 2 2 2 2 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|126179972|ref|YP_001047937.1| - 5.5e-23 81.4 0.0 1.9e-22 79.6 0.0 1.7 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|126179972|ref|YP_001047937.1| - 3e-11 43.5 0.0 5e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|126179972|ref|YP_001047937.1| - 3.9e-11 42.6 0.0 1.4e-09 37.5 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|126179972|ref|YP_001047937.1| - 3.6e-10 39.5 0.0 1e-09 38.0 0.0 1.7 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein KR PF08659.10 gi|126179972|ref|YP_001047937.1| - 1.9e-07 31.2 0.2 3.7e-07 30.2 0.2 1.4 1 1 0 1 1 1 1 KR domain NmrA PF05368.13 gi|126179972|ref|YP_001047937.1| - 2.4e-06 27.3 0.0 4.1e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|126179972|ref|YP_001047937.1| - 2.6e-06 27.0 0.0 5.3e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.17 gi|126179972|ref|YP_001047937.1| - 3.9e-06 26.2 0.0 0.013 14.6 0.0 2.3 2 0 0 2 2 2 2 RmlD substrate binding domain TrkA_N PF02254.18 gi|126179972|ref|YP_001047937.1| - 0.032 14.5 0.1 0.052 13.8 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|126179972|ref|YP_001047937.1| - 0.062 13.6 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Ldh_1_N PF00056.23 gi|126179972|ref|YP_001047937.1| - 0.11 12.6 0.1 0.23 11.6 0.1 1.4 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|126179972|ref|YP_001047937.1| - 0.15 12.0 0.0 0.28 11.1 0.0 1.4 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Gly_kinase PF02595.15 gi|126179972|ref|YP_001047937.1| - 0.21 10.6 0.0 0.35 9.8 0.0 1.3 1 0 0 1 1 1 0 Glycerate kinase family POR_N PF01855.19 gi|126179974|ref|YP_001047939.1| - 3.6e-46 157.8 0.0 1.1e-45 156.2 0.0 1.7 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|126179974|ref|YP_001047939.1| - 3.9e-27 95.5 0.4 1.2e-26 93.9 0.4 1.7 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|126179974|ref|YP_001047939.1| - 8.2e-07 28.8 0.2 2.2e-06 27.4 0.2 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|126179974|ref|YP_001047939.1| - 0.089 13.1 0.0 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|126179974|ref|YP_001047939.1| - 0.14 12.1 0.0 0.61 10.0 0.0 2.0 2 0 0 2 2 2 0 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|126179975|ref|YP_001047940.1| - 1.8e-30 105.8 0.0 2.4e-30 105.4 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|126179975|ref|YP_001047940.1| - 6e-12 45.5 0.5 1.3e-11 44.4 0.3 1.7 2 0 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal adh_short_C2 PF13561.6 gi|126179976|ref|YP_001047941.1| - 1.7e-68 230.7 0.2 2.3e-68 230.3 0.2 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|126179976|ref|YP_001047941.1| - 9.2e-51 172.1 0.0 1.1e-50 171.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|126179976|ref|YP_001047941.1| - 5.1e-11 42.8 0.1 7.5e-11 42.3 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|126179976|ref|YP_001047941.1| - 4.4e-08 32.9 0.1 5.6e-08 32.5 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.8 gi|126179976|ref|YP_001047941.1| - 0.0086 15.8 0.1 0.02 14.6 0.0 1.7 2 0 0 2 2 2 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase GDP_Man_Dehyd PF16363.5 gi|126179976|ref|YP_001047941.1| - 0.017 14.5 0.0 0.3 10.4 0.0 2.0 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase THF_DHG_CYH_C PF02882.19 gi|126179976|ref|YP_001047941.1| - 0.029 13.7 0.0 0.044 13.1 0.0 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain MFS_1 PF07690.16 gi|126179977|ref|YP_001047942.1| - 6.4e-29 101.0 57.4 6.3e-21 74.7 41.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|126179977|ref|YP_001047942.1| - 1.3e-06 27.6 23.2 3.5e-06 26.1 23.2 1.7 1 1 0 1 1 1 1 MFS_1 like family DUF3937 PF13073.6 gi|126179977|ref|YP_001047942.1| - 3.2 7.9 6.8 2 8.6 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3937) Nitroreductase PF00881.24 gi|126179978|ref|YP_001047943.1| - 2.8e-29 102.4 0.0 3.4e-29 102.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family DUF1211 PF06736.11 gi|126179980|ref|YP_001047945.1| - 4.5e-20 71.9 3.8 4.5e-20 71.9 3.8 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1211) DUF2905 PF11146.8 gi|126179980|ref|YP_001047945.1| - 0.019 15.1 0.2 0.019 15.1 0.2 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2905) VirB8 PF04335.13 gi|126179980|ref|YP_001047945.1| - 0.062 13.1 1.6 0.1 12.4 1.6 1.3 1 0 0 1 1 1 0 VirB8 protein YrhC PF14143.6 gi|126179980|ref|YP_001047945.1| - 0.29 11.2 2.2 2.1 8.5 0.7 2.6 2 0 0 2 2 2 0 YrhC-like protein ABC2_membrane_3 PF12698.7 gi|126179980|ref|YP_001047945.1| - 6.5 5.7 16.3 0.69 9.0 5.1 2.0 1 1 0 2 2 2 0 ABC-2 family transporter protein PAD_porph PF04371.15 gi|126179981|ref|YP_001047946.1| - 6e-120 400.3 0.0 1.4e-119 399.1 0.0 1.6 2 0 0 2 2 2 1 Porphyromonas-type peptidyl-arginine deiminase CN_hydrolase PF00795.22 gi|126179981|ref|YP_001047946.1| - 3e-53 180.8 0.0 4.2e-53 180.3 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase FMN_red PF03358.15 gi|126179981|ref|YP_001047946.1| - 0.099 12.4 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 NADPH-dependent FMN reductase Mntp PF02659.15 gi|126179982|ref|YP_001047947.1| - 6.9e-45 152.5 17.2 6.9e-45 152.5 17.2 2.0 2 0 0 2 2 2 2 Putative manganese efflux pump Pam17 PF08566.10 gi|126179982|ref|YP_001047947.1| - 3.5 7.4 5.9 0.63 9.9 0.8 2.1 2 0 0 2 2 2 0 Mitochondrial import protein Pam17 IncE PF17627.2 gi|126179982|ref|YP_001047947.1| - 6.2 6.8 16.3 0.19 11.7 6.7 2.5 2 2 0 2 2 2 0 Inclusion membrane protein E DUF362 PF04015.12 gi|126179983|ref|YP_001047948.1| - 7e-37 127.6 0.0 9e-37 127.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) APH_6_hur PF04655.14 gi|126179983|ref|YP_001047948.1| - 0.0011 18.4 0.0 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 Aminoglycoside/hydroxyurea antibiotic resistance kinase DUF3906 PF13046.6 gi|126179983|ref|YP_001047948.1| - 0.15 12.2 0.0 0.31 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3906) DZR PF12773.7 gi|126179984|ref|YP_001047949.1| - 0.00035 20.5 10.9 0.054 13.5 2.2 3.9 2 2 0 2 2 2 2 Double zinc ribbon C1_1 PF00130.22 gi|126179984|ref|YP_001047949.1| - 0.01 15.7 5.0 0.14 12.0 0.3 2.8 3 0 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Rad50_zn_hook PF04423.14 gi|126179984|ref|YP_001047949.1| - 0.044 13.6 0.5 0.044 13.6 0.5 2.7 4 0 0 4 4 3 0 Rad50 zinc hook motif Zn-ribbon_8 PF09723.10 gi|126179984|ref|YP_001047949.1| - 0.091 12.9 16.5 0.86 9.8 0.2 4.6 3 1 0 4 4 4 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|126179984|ref|YP_001047949.1| - 0.17 11.6 0.3 0.17 11.6 0.3 4.4 5 0 0 5 5 5 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|126179984|ref|YP_001047949.1| - 0.27 11.2 6.5 18 5.4 0.2 3.5 2 2 1 3 3 3 0 Prokaryotic RING finger family 1 DUF2116 PF09889.9 gi|126179984|ref|YP_001047949.1| - 0.29 11.2 0.2 0.29 11.2 0.2 2.8 4 0 0 4 4 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF35_N PF12172.8 gi|126179984|ref|YP_001047949.1| - 0.59 10.1 15.9 1.2 9.1 0.1 3.9 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ACC PF17848.1 gi|126179984|ref|YP_001047949.1| - 0.84 9.8 12.2 1.9 8.6 0.1 4.2 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain Prok-RING_4 PF14447.6 gi|126179984|ref|YP_001047949.1| - 0.97 9.3 6.5 0.5 10.3 1.0 2.9 2 1 0 2 2 2 0 Prokaryotic RING finger family 4 Ribosomal_L37e PF01907.19 gi|126179984|ref|YP_001047949.1| - 1.1 9.5 5.9 0.81 9.9 0.1 2.8 3 0 0 3 3 3 0 Ribosomal protein L37e HypA PF01155.19 gi|126179984|ref|YP_001047949.1| - 1.1 9.3 7.3 1.1 9.3 1.1 2.5 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|126179984|ref|YP_001047949.1| - 2.3 7.7 17.1 0.69 9.4 0.4 4.3 4 0 0 4 4 4 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|126179984|ref|YP_001047949.1| - 2.3 8.2 11.0 0.49 10.4 0.8 3.5 2 1 0 3 3 3 0 zinc-ribbons YhfH PF14149.6 gi|126179984|ref|YP_001047949.1| - 2.5 8.1 10.9 2.8 8.0 0.0 3.8 4 0 0 4 4 4 0 YhfH-like protein Auto_anti-p27 PF06677.12 gi|126179984|ref|YP_001047949.1| - 4 7.7 9.9 29 4.9 0.0 3.5 3 1 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-RING_7 PF02591.15 gi|126179984|ref|YP_001047949.1| - 5.4 7.3 12.2 4.6 7.5 0.1 4.1 4 0 0 4 4 4 0 C4-type zinc ribbon domain zf-H2C2_2 PF13465.6 gi|126179984|ref|YP_001047949.1| - 9.9 6.8 16.9 41 4.8 0.1 4.3 4 0 0 4 4 4 0 Zinc-finger double domain tRNA-synt_2b PF00587.25 gi|126179985|ref|YP_001047950.1| - 3.2e-26 92.4 0.0 4.5e-26 91.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|126179985|ref|YP_001047950.1| - 2.5e-15 56.4 0.1 5.1e-15 55.4 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|126179985|ref|YP_001047950.1| - 1.7e-07 31.3 0.1 3.5e-07 30.3 0.1 1.5 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal DHDPS PF00701.22 gi|126179985|ref|YP_001047950.1| - 0.097 11.4 0.5 8 5.1 0.0 2.1 2 0 0 2 2 2 0 Dihydrodipicolinate synthetase family kleA_kleC PF17383.2 gi|126179985|ref|YP_001047950.1| - 1.5 9.2 4.1 2.5 8.5 0.1 2.6 3 0 0 3 3 3 0 Uncharacterized KorC regulated protein A SpoIIM PF01944.17 gi|126179986|ref|YP_001047951.1| - 5.4e-33 114.2 14.5 6.6e-33 113.9 14.5 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M DUF3789 PF12664.7 gi|126179986|ref|YP_001047951.1| - 0.1 12.3 4.3 0.32 10.7 4.3 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3789) DUF4044 PF13253.6 gi|126179986|ref|YP_001047951.1| - 0.57 9.7 2.9 1.7 8.3 2.9 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF4044) DUF63 PF01889.17 gi|126179987|ref|YP_001047952.1| - 6.5e-99 331.5 18.7 7.3e-99 331.4 18.7 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Fe-ADH_2 PF13685.6 gi|126179988|ref|YP_001047953.1| - 7e-69 232.3 1.6 9e-69 231.9 1.6 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|126179988|ref|YP_001047953.1| - 2.7e-22 79.1 6.2 5.1e-21 74.9 6.2 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|126179988|ref|YP_001047953.1| - 6.8e-08 32.0 0.4 7.1e-07 28.6 0.4 2.1 1 1 0 1 1 1 1 3-dehydroquinate synthase Peripla_BP_4 PF13407.6 gi|126179988|ref|YP_001047953.1| - 0.028 14.0 0.6 0.074 12.6 0.1 1.8 2 0 0 2 2 2 0 Periplasmic binding protein domain Radical_SAM_C PF16199.5 gi|126179989|ref|YP_001047954.1| - 2.7e-25 88.2 0.0 4.6e-25 87.5 0.0 1.4 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|126179989|ref|YP_001047954.1| - 5.4e-16 59.4 0.0 1.1e-15 58.4 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|126179989|ref|YP_001047954.1| - 3.8e-07 30.3 0.0 1.2e-06 28.8 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|126179989|ref|YP_001047954.1| - 3.4e-05 23.8 0.0 0.00014 21.8 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain DNA_primase_S PF01896.19 gi|126179990|ref|YP_001047955.1| - 9.5e-18 64.9 0.0 2.4e-17 63.5 0.0 1.6 1 1 0 1 1 1 1 DNA primase small subunit TT_ORF2a PF08197.11 gi|126179990|ref|YP_001047955.1| - 0.0028 17.6 1.9 0.0081 16.1 1.9 1.7 1 0 0 1 1 1 1 pORF2a truncated protein Ribosomal_L44 PF00935.19 gi|126179992|ref|YP_001047957.1| - 1.6e-25 89.4 3.0 2e-25 89.1 3.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.20 gi|126179992|ref|YP_001047957.1| - 0.0086 16.5 2.4 0.074 13.5 1.3 2.4 2 0 0 2 2 2 1 Ribosomal protein L33 Ribosomal_L9_N PF01281.19 gi|126179992|ref|YP_001047957.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L9, N-terminal domain Zn_ribbon_SprT PF17283.2 gi|126179992|ref|YP_001047957.1| - 0.14 12.1 0.7 0.14 12.1 0.7 2.4 2 1 0 2 2 2 0 SprT-like zinc ribbon domain Ribosomal_S27e PF01667.17 gi|126179993|ref|YP_001047958.1| - 5.6e-26 90.0 0.3 6.1e-26 89.9 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|126179993|ref|YP_001047958.1| - 0.00032 20.2 1.5 0.00044 19.7 1.5 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-RING_10 PF16685.5 gi|126179993|ref|YP_001047958.1| - 0.024 14.8 0.1 0.27 11.4 0.0 2.0 2 0 0 2 2 2 0 zinc RING finger of MSL2 Stc1 PF12898.7 gi|126179993|ref|YP_001047958.1| - 0.027 15.0 0.3 0.029 14.9 0.3 1.2 1 0 0 1 1 1 0 Stc1 domain Zn_Tnp_IS1595 PF12760.7 gi|126179993|ref|YP_001047958.1| - 0.031 14.3 0.5 0.04 13.9 0.5 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn_Tnp_IS91 PF14319.6 gi|126179993|ref|YP_001047958.1| - 0.038 14.0 0.3 0.043 13.8 0.3 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-RING_7 PF02591.15 gi|126179993|ref|YP_001047958.1| - 0.045 13.9 1.3 0.59 10.4 0.1 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|126179993|ref|YP_001047958.1| - 0.065 13.2 0.6 0.1 12.5 0.6 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_6 PF14599.6 gi|126179993|ref|YP_001047958.1| - 0.066 13.2 0.5 0.092 12.8 0.5 1.3 1 0 0 1 1 1 0 Zinc-ribbon eIF-5_eIF-2B PF01873.17 gi|126179993|ref|YP_001047958.1| - 0.067 13.1 1.3 0.083 12.8 1.3 1.2 1 0 0 1 1 1 0 Domain found in IF2B/IF5 DUF3797 PF12677.7 gi|126179993|ref|YP_001047958.1| - 0.071 13.0 2.4 0.19 11.6 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) CxC7 PF18866.1 gi|126179993|ref|YP_001047958.1| - 0.2 11.8 1.2 13 6.0 0.1 2.1 1 1 1 2 2 2 0 CxC7 like cysteine cluster associated with KDZ transposases TFIIS_C PF01096.18 gi|126179993|ref|YP_001047958.1| - 0.23 11.4 4.2 9.9 6.1 4.2 2.2 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) EIF_2_alpha PF07541.12 gi|126179994|ref|YP_001047959.1| - 1.2e-21 77.0 0.1 2.1e-21 76.2 0.1 1.3 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|126179994|ref|YP_001047959.1| - 5.9e-12 45.8 0.1 1.2e-11 44.8 0.1 1.5 1 0 0 1 1 1 1 S1 RNA binding domain Nop10p PF04135.12 gi|298206416|ref|YP_003717804.1| - 6.7e-23 80.5 4.5 7.7e-23 80.3 4.5 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-NADH-PPase PF09297.11 gi|298206416|ref|YP_003717804.1| - 0.11 12.1 5.4 0.82 9.4 1.6 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain RecR PF02132.15 gi|298206416|ref|YP_003717804.1| - 0.39 10.3 3.4 0.51 9.9 3.4 1.2 1 0 0 1 1 1 0 RecR protein PAC2 PF09754.9 gi|126179995|ref|YP_001047960.1| - 3.4e-52 177.5 0.1 3.9e-52 177.4 0.1 1.0 1 0 0 1 1 1 1 PAC2 family TPK_catalytic PF04263.16 gi|126179995|ref|YP_001047960.1| - 0.019 15.0 0.0 6.8 6.8 0.0 2.3 2 0 0 2 2 2 0 Thiamin pyrophosphokinase, catalytic domain NAD_binding_10 PF13460.6 gi|126179995|ref|YP_001047960.1| - 0.097 12.6 0.0 0.28 11.1 0.0 1.9 2 1 0 2 2 2 0 NAD(P)H-binding RDD PF06271.12 gi|126179996|ref|YP_001047961.1| - 1.5e-13 51.2 4.0 2.5e-13 50.5 4.0 1.3 1 1 0 1 1 1 1 RDD family Rhodanese PF00581.20 gi|126179997|ref|YP_001047962.1| - 2.3e-18 66.6 0.0 3.1e-18 66.2 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain ABC_tran PF00005.27 gi|126179998|ref|YP_001047963.1| - 2.4e-09 37.8 0.0 4.6e-09 36.9 0.0 1.4 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|126179998|ref|YP_001047963.1| - 0.0018 18.2 0.1 0.0026 17.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system DUF1614 PF07758.11 gi|126179999|ref|YP_001047964.1| - 7.2e-39 133.5 18.6 7.2e-39 133.5 18.6 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1614) Asn_synthase PF00733.21 gi|126180000|ref|YP_001047965.1| - 1.2e-79 268.5 0.1 1.6e-79 268.2 0.1 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 gi|126180000|ref|YP_001047965.1| - 2.3e-50 169.6 0.0 4e-50 168.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|126180000|ref|YP_001047965.1| - 3.7e-47 159.9 0.0 7.6e-47 158.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 gi|126180000|ref|YP_001047965.1| - 0.0031 17.0 0.0 0.0061 16.0 0.0 1.4 1 0 0 1 1 1 1 Aluminium induced protein NAD_synthase PF02540.17 gi|126180000|ref|YP_001047965.1| - 0.086 12.0 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 NAD synthase CMD PF02627.20 gi|126180001|ref|YP_001047966.1| - 1.3e-16 60.3 0.4 1.7e-16 60.0 0.4 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family MCR_C PF04609.12 gi|126180002|ref|YP_001047967.1| - 2.8e-126 420.1 0.4 3.3e-126 419.9 0.4 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF2113 PF09886.9 gi|126180003|ref|YP_001047968.1| - 3.4e-66 222.1 0.0 3.8e-66 222.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) BcrAD_BadFG PF01869.20 gi|126180004|ref|YP_001047969.1| - 2.5e-60 204.3 7.2 3.9e-60 203.6 7.2 1.3 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|126180004|ref|YP_001047969.1| - 0.0016 18.8 0.0 0.0088 16.5 0.0 2.2 1 1 0 1 1 1 1 Cell division protein FtsA DUF2112 PF09885.9 gi|126180005|ref|YP_001047970.1| - 5.6e-64 214.5 0.0 6.4e-64 214.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.9 gi|126180006|ref|YP_001047971.1| - 8.1e-41 137.9 0.0 9.9e-41 137.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) Pro_isomerase PF00160.21 gi|126180007|ref|YP_001047972.1| - 0.14 12.4 0.1 2.5 8.4 0.0 2.8 3 0 0 3 3 3 0 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABC_tran PF00005.27 gi|126180008|ref|YP_001047973.1| - 8e-53 178.6 0.0 3.4e-27 95.6 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|126180008|ref|YP_001047973.1| - 2.8e-06 27.4 3.6 0.045 13.6 0.5 3.5 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126180008|ref|YP_001047973.1| - 1.2e-05 24.9 4.0 0.14 11.6 0.0 3.8 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|126180008|ref|YP_001047973.1| - 3.9e-05 23.3 0.4 0.11 12.3 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|126180008|ref|YP_001047973.1| - 7.1e-05 22.8 1.1 0.33 10.8 0.0 2.6 3 0 0 3 3 2 2 RsgA GTPase AAA_23 PF13476.6 gi|126180008|ref|YP_001047973.1| - 0.00014 22.4 1.6 0.026 15.0 0.1 2.3 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|126180008|ref|YP_001047973.1| - 0.00061 19.3 0.1 0.12 11.8 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein ATP-synt_ab PF00006.25 gi|126180008|ref|YP_001047973.1| - 0.00086 19.0 1.3 0.039 13.6 1.2 2.3 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain PRK PF00485.18 gi|126180008|ref|YP_001047973.1| - 0.0018 18.1 0.5 0.32 10.7 0.1 2.4 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.23 gi|126180008|ref|YP_001047973.1| - 0.003 17.6 0.1 3.3 7.8 0.1 3.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|126180008|ref|YP_001047973.1| - 0.0038 16.5 2.0 1.8 7.7 0.1 2.8 3 0 0 3 3 3 2 NB-ARC domain MobB PF03205.14 gi|126180008|ref|YP_001047973.1| - 0.0043 17.0 0.3 2.3 8.1 0.1 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.6 gi|126180008|ref|YP_001047973.1| - 0.0074 16.0 0.8 4 7.1 0.0 2.8 3 0 0 3 3 2 1 AAA domain PduV-EutP PF10662.9 gi|126180008|ref|YP_001047973.1| - 0.0087 15.8 0.1 1.3 8.7 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation IstB_IS21 PF01695.17 gi|126180008|ref|YP_001047973.1| - 0.011 15.4 0.5 2.5 7.8 0.0 3.0 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|126180008|ref|YP_001047973.1| - 0.013 15.8 2.1 5.4 7.3 0.2 2.7 3 0 0 3 3 2 0 AAA domain DUF87 PF01935.17 gi|126180008|ref|YP_001047973.1| - 0.013 15.6 1.2 2.9 7.9 0.2 3.0 3 0 0 3 3 3 0 Helicase HerA, central domain AAA_24 PF13479.6 gi|126180008|ref|YP_001047973.1| - 0.025 14.3 0.7 3.2 7.4 0.2 2.4 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|126180008|ref|YP_001047973.1| - 0.026 13.2 0.0 0.24 10.0 0.0 2.2 3 0 0 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|126180008|ref|YP_001047973.1| - 0.034 14.5 1.4 9.9 6.5 0.0 2.8 2 1 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|126180008|ref|YP_001047973.1| - 0.038 13.9 1.1 6.9 6.6 0.0 2.5 2 0 0 2 2 2 0 NACHT domain TsaE PF02367.17 gi|126180008|ref|YP_001047973.1| - 0.042 13.8 0.3 5 7.1 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Mg_chelatase PF01078.21 gi|126180008|ref|YP_001047973.1| - 0.046 13.1 0.2 2 7.7 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|126180008|ref|YP_001047973.1| - 0.064 13.8 0.4 1.1 9.9 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|126180008|ref|YP_001047973.1| - 0.089 13.0 0.1 3.1 7.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain Rad50_zn_hook PF04423.14 gi|126180008|ref|YP_001047973.1| - 0.13 12.2 0.4 2.7 7.9 0.1 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif Roc PF08477.13 gi|126180008|ref|YP_001047973.1| - 0.17 12.1 0.2 25 5.1 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Hydrolase PF00702.26 gi|126180009|ref|YP_001047974.1| - 1.9e-18 67.5 0.1 4.2e-18 66.4 0.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|126180009|ref|YP_001047974.1| - 0.00054 20.1 0.0 0.003 17.6 0.0 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|126180009|ref|YP_001047974.1| - 0.0013 18.5 0.1 0.13 11.9 0.1 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|126180009|ref|YP_001047974.1| - 0.017 15.5 0.2 0.094 13.1 0.0 2.2 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|126180009|ref|YP_001047974.1| - 0.031 14.4 0.0 0.22 11.6 0.0 2.4 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|126180009|ref|YP_001047974.1| - 0.034 14.2 0.0 0.071 13.2 0.0 1.6 1 0 0 1 1 1 0 HAD-hyrolase-like Acid_phosphat_B PF03767.14 gi|126180009|ref|YP_001047974.1| - 0.22 11.1 0.0 0.39 10.3 0.0 1.4 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) IF-2B PF01008.17 gi|126180010|ref|YP_001047975.1| - 3.6e-87 292.2 1.7 4.1e-87 292.0 1.7 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF982 PF06169.12 gi|126180010|ref|YP_001047975.1| - 9.8 6.3 9.4 0.29 11.2 1.4 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF982) HTH_24 PF13412.6 gi|126180011|ref|YP_001047976.1| - 3.1e-25 87.5 0.7 9e-15 54.0 0.1 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|126180011|ref|YP_001047976.1| - 1.2e-19 69.9 0.0 5e-09 35.9 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|126180011|ref|YP_001047976.1| - 2.6e-19 69.0 0.6 2.1e-09 37.3 0.2 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|126180011|ref|YP_001047976.1| - 1.1e-14 54.0 1.9 3.5e-07 30.0 0.3 2.3 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|126180011|ref|YP_001047976.1| - 1.9e-11 43.7 0.0 1.9e-07 30.9 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|126180011|ref|YP_001047976.1| - 7.1e-11 41.6 2.2 2.2e-06 27.3 0.2 2.6 2 0 0 2 2 2 2 Homeodomain-like domain HTH_IclR PF09339.10 gi|126180011|ref|YP_001047976.1| - 1e-10 41.2 0.1 0.00039 20.1 0.0 2.4 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|126180011|ref|YP_001047976.1| - 1.9e-10 40.5 0.4 5.6e-06 26.2 0.1 2.3 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|126180011|ref|YP_001047976.1| - 3e-10 40.1 3.5 0.0001 22.3 0.3 2.5 2 1 0 2 2 2 2 Helix-turn-helix domain HTH_11 PF08279.12 gi|126180011|ref|YP_001047976.1| - 3.2e-10 39.8 0.2 1.8e-05 24.6 0.1 2.6 2 0 0 2 2 2 2 HTH domain HTH_29 PF13551.6 gi|126180011|ref|YP_001047976.1| - 4.8e-10 39.3 1.2 5.9e-06 26.2 0.1 3.1 3 0 0 3 3 3 2 Winged helix-turn helix MarR PF01047.22 gi|126180011|ref|YP_001047976.1| - 3.4e-09 36.5 0.0 4.3e-05 23.4 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_27 PF13463.6 gi|126180011|ref|YP_001047976.1| - 3.1e-08 34.0 0.1 0.00052 20.4 0.1 2.3 2 0 0 2 2 2 2 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.12 gi|126180011|ref|YP_001047976.1| - 7.3e-08 32.0 0.1 0.0095 15.6 0.0 2.4 2 0 0 2 2 2 2 Sigma-70, region 4 GntR PF00392.21 gi|126180011|ref|YP_001047976.1| - 9e-08 31.7 0.2 9.1e-05 22.0 0.1 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|126180011|ref|YP_001047976.1| - 1.5e-07 31.5 0.0 1.7e-05 24.9 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_40 PF14493.6 gi|126180011|ref|YP_001047976.1| - 4.2e-07 30.3 0.0 0.0047 17.4 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain Rrf2 PF02082.20 gi|126180011|ref|YP_001047976.1| - 5.4e-07 29.9 0.0 0.0051 17.1 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_38 PF13936.6 gi|126180011|ref|YP_001047976.1| - 1.3e-06 28.1 5.4 0.00013 21.6 0.4 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain PaaX PF07848.12 gi|126180011|ref|YP_001047976.1| - 1.8e-06 28.1 0.3 0.00039 20.6 0.0 2.3 2 0 0 2 2 2 1 PaaX-like protein Sigma70_r4 PF04545.16 gi|126180011|ref|YP_001047976.1| - 2.2e-06 27.1 0.5 0.0013 18.2 0.1 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 SMC_ScpB PF04079.16 gi|126180011|ref|YP_001047976.1| - 5e-06 26.2 0.0 0.0056 16.3 0.0 2.1 1 1 1 2 2 2 2 Segregation and condensation complex subunit ScpB GerE PF00196.19 gi|126180011|ref|YP_001047976.1| - 7.5e-06 25.4 0.0 0.0043 16.6 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_7 PF02796.15 gi|126180011|ref|YP_001047976.1| - 8.9e-06 25.7 0.8 0.00077 19.5 0.2 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_10 PF04967.12 gi|126180011|ref|YP_001047976.1| - 1.5e-05 24.7 0.1 0.0047 16.7 0.0 2.4 2 0 0 2 2 2 1 HTH DNA binding domain HTH_AsnC-type PF13404.6 gi|126180011|ref|YP_001047976.1| - 1.9e-05 24.4 1.0 0.0022 17.8 0.4 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_3 PF01381.22 gi|126180011|ref|YP_001047976.1| - 2.3e-05 24.4 0.0 0.00073 19.5 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix HrcA_DNA-bdg PF03444.15 gi|126180011|ref|YP_001047976.1| - 3.9e-05 23.2 0.0 0.021 14.4 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding FaeA PF04703.12 gi|126180011|ref|YP_001047976.1| - 0.00011 22.5 0.1 0.72 10.3 0.0 2.4 2 0 0 2 2 2 2 FaeA-like protein DUF2513 PF10711.9 gi|126180011|ref|YP_001047976.1| - 0.00014 22.1 0.0 0.33 11.3 0.0 2.2 2 0 0 2 2 2 2 Hypothetical protein (DUF2513) HTH_CodY PF08222.11 gi|126180011|ref|YP_001047976.1| - 0.00018 21.0 1.1 0.0014 18.1 0.1 2.3 2 0 0 2 2 2 1 CodY helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|126180011|ref|YP_001047976.1| - 0.00023 21.3 0.0 0.23 11.7 0.0 2.3 2 0 0 2 2 2 1 B-block binding subunit of TFIIIC RP-C PF03428.13 gi|126180011|ref|YP_001047976.1| - 0.00031 20.5 0.1 0.57 9.8 0.0 2.2 2 0 0 2 2 2 2 Replication protein C N-terminal domain TFIIE_alpha PF02002.17 gi|126180011|ref|YP_001047976.1| - 0.00032 20.5 0.0 0.22 11.4 0.0 2.2 1 1 1 2 2 2 1 TFIIE alpha subunit Penicillinase_R PF03965.16 gi|126180011|ref|YP_001047976.1| - 0.00048 20.5 0.0 0.0029 18.0 0.0 2.1 1 1 1 2 2 2 1 Penicillinase repressor LexA_DNA_bind PF01726.16 gi|126180011|ref|YP_001047976.1| - 0.001 18.8 0.1 0.13 12.0 0.0 2.4 2 0 0 2 2 2 1 LexA DNA binding domain HTH_36 PF13730.6 gi|126180011|ref|YP_001047976.1| - 0.0011 18.9 0.0 0.33 11.0 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_8 PF02954.19 gi|126180011|ref|YP_001047976.1| - 0.0011 18.7 0.2 0.073 12.9 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family DUF977 PF06163.11 gi|126180011|ref|YP_001047976.1| - 0.0012 18.8 0.4 1.1 9.3 0.0 2.2 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF977) HTH_17 PF12728.7 gi|126180011|ref|YP_001047976.1| - 0.0031 17.7 0.1 0.51 10.6 0.0 2.6 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|126180011|ref|YP_001047976.1| - 0.0032 17.6 0.0 0.4 10.9 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rio2_N PF09202.11 gi|126180011|ref|YP_001047976.1| - 0.0039 17.4 0.0 2 8.7 0.0 2.4 2 0 0 2 2 2 1 Rio2, N-terminal MerR PF00376.23 gi|126180011|ref|YP_001047976.1| - 0.0041 16.9 0.3 2.8 7.8 0.0 2.9 2 1 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.6 gi|126180011|ref|YP_001047976.1| - 0.0048 17.0 0.1 0.36 10.9 0.0 2.4 2 0 0 2 2 2 1 MerR HTH family regulatory protein NUMOD1 PF07453.13 gi|126180011|ref|YP_001047976.1| - 0.0074 16.5 1.6 0.73 10.2 0.1 2.7 3 0 0 3 3 2 1 NUMOD1 domain HTH_12 PF08461.10 gi|126180011|ref|YP_001047976.1| - 0.01 15.8 0.3 4 7.5 0.0 2.9 2 1 1 3 3 3 0 Ribonuclease R winged-helix domain HTH_26 PF13443.6 gi|126180011|ref|YP_001047976.1| - 0.017 15.5 0.0 0.44 11.0 0.0 2.3 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_Tnp_ISL3 PF13542.6 gi|126180011|ref|YP_001047976.1| - 0.029 13.8 0.2 0.15 11.5 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_19 PF12844.7 gi|126180011|ref|YP_001047976.1| - 0.044 13.8 0.0 0.38 10.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Terminase_5 PF06056.12 gi|126180011|ref|YP_001047976.1| - 0.045 13.6 0.0 14 5.7 0.0 2.3 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_37 PF13744.6 gi|126180011|ref|YP_001047976.1| - 0.061 13.3 0.0 0.43 10.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_31 PF13560.6 gi|126180011|ref|YP_001047976.1| - 0.061 13.7 0.0 0.48 10.8 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain TetR_N PF00440.23 gi|126180011|ref|YP_001047976.1| - 0.067 13.0 0.2 10 6.0 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family DUF3489 PF11994.8 gi|126180011|ref|YP_001047976.1| - 0.077 13.1 0.0 16 5.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3489) HTH_41 PF14502.6 gi|126180011|ref|YP_001047976.1| - 0.078 12.7 0.0 3.1 7.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|126180011|ref|YP_001047976.1| - 0.085 12.6 0.1 0.86 9.4 0.1 2.1 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_30 PF13556.6 gi|126180011|ref|YP_001047976.1| - 0.085 12.7 0.1 8.1 6.3 0.0 2.7 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HxlR PF01638.17 gi|126180011|ref|YP_001047976.1| - 0.094 12.6 0.0 0.22 11.4 0.0 1.6 1 1 0 1 1 1 0 HxlR-like helix-turn-helix PadR PF03551.14 gi|126180011|ref|YP_001047976.1| - 0.15 12.0 0.0 5.7 7.0 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family BLACT_WH PF17778.1 gi|126180011|ref|YP_001047976.1| - 0.16 12.0 0.2 2.9 7.9 0.0 2.8 4 0 0 4 4 2 0 Beta-lactamase associated winged helix domain Dimerisation2 PF16864.5 gi|126180011|ref|YP_001047976.1| - 0.17 11.9 0.0 0.41 10.6 0.0 1.6 1 0 0 1 1 1 0 Dimerisation domain TnsD PF15978.5 gi|126180011|ref|YP_001047976.1| - 0.24 10.4 0.0 1.3 7.9 0.0 1.8 1 1 1 2 2 2 0 Tn7-like transposition protein D DUF5121 PF17165.4 gi|126180014|ref|YP_001047979.1| - 0.023 15.1 0.0 0.073 13.5 0.0 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF5121) ABC2_membrane_2 PF12679.7 gi|126180015|ref|YP_001047980.1| - 2.1e-41 142.1 10.1 2.5e-41 141.8 10.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|126180015|ref|YP_001047980.1| - 2.4e-06 27.7 9.8 2.4e-06 27.7 9.8 2.0 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|126180015|ref|YP_001047980.1| - 8.9e-06 25.4 3.2 8.9e-06 25.4 3.2 2.2 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|126180015|ref|YP_001047980.1| - 0.00032 20.2 11.6 0.00032 20.2 11.6 2.3 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|126180016|ref|YP_001047981.1| - 1.1e-41 143.0 4.7 7.5e-41 140.3 4.7 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|126180016|ref|YP_001047981.1| - 2.7e-06 26.7 10.0 2.7e-06 26.7 10.0 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|126180016|ref|YP_001047981.1| - 8.1e-05 22.3 1.3 8.1e-05 22.3 1.3 2.8 3 1 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|126180016|ref|YP_001047981.1| - 0.0001 22.3 5.0 0.0001 22.3 5.0 2.1 2 1 0 2 2 2 1 ABC-2 family transporter protein Hormone_3 PF00159.18 gi|126180016|ref|YP_001047981.1| - 0.081 13.0 0.8 0.62 10.2 0.3 2.2 2 0 0 2 2 2 0 Pancreatic hormone peptide ABC2_membrane_2 PF12679.7 gi|126180017|ref|YP_001047982.1| - 2.3e-48 165.0 9.1 2.7e-48 164.7 9.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|126180017|ref|YP_001047982.1| - 8.3e-06 25.9 6.4 8.3e-06 25.9 6.4 2.2 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|126180017|ref|YP_001047982.1| - 0.0013 17.9 15.1 0.0013 17.9 15.1 2.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|126180017|ref|YP_001047982.1| - 0.0016 18.0 6.5 0.0016 18.0 6.5 2.2 3 0 0 3 3 3 1 ABC-2 family transporter protein Presenilin PF01080.17 gi|126180017|ref|YP_001047982.1| - 0.047 12.5 3.7 0.07 11.9 3.7 1.2 1 0 0 1 1 1 0 Presenilin ABC2_membrane PF01061.24 gi|126180017|ref|YP_001047982.1| - 0.14 11.6 21.3 0.069 12.6 17.4 2.2 2 1 1 3 3 3 0 ABC-2 type transporter ELF PF03317.13 gi|126180017|ref|YP_001047982.1| - 0.2 11.7 0.1 8.1 6.5 0.0 2.4 2 1 0 2 2 2 0 ELF protein DIOX_N PF14226.6 gi|126180018|ref|YP_001047983.1| - 6.5e-05 23.7 0.1 0.017 15.9 0.1 2.5 1 1 1 2 2 2 1 non-haem dioxygenase in morphine synthesis N-terminal DUF5622 PF18533.1 gi|126180018|ref|YP_001047983.1| - 0.012 15.7 4.0 15 5.9 0.0 4.4 3 1 1 4 4 4 0 Domain of unknown function (DUF5622) HTH_19 PF12844.7 gi|126180018|ref|YP_001047983.1| - 0.048 13.7 3.4 8.2 6.5 0.0 3.4 4 0 0 4 4 4 0 Helix-turn-helix domain Clp_N PF02861.20 gi|126180018|ref|YP_001047983.1| - 0.05 13.7 0.3 59 3.9 0.0 3.4 3 0 0 3 3 3 0 Clp amino terminal domain, pathogenicity island component Pro_Al_protease PF02983.14 gi|126180018|ref|YP_001047983.1| - 0.056 13.5 0.0 0.24 11.5 0.0 2.1 2 0 0 2 2 2 0 Alpha-lytic protease prodomain DUF348 PF03990.14 gi|126180018|ref|YP_001047983.1| - 0.078 12.7 0.2 91 2.9 0.0 3.4 3 0 0 3 3 3 0 G5-linked-Ubiquitin-like domain TetR_C_17 PF17922.1 gi|126180018|ref|YP_001047983.1| - 0.089 12.9 0.1 2.5 8.3 0.0 2.4 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain ATP-cone PF03477.16 gi|126180018|ref|YP_001047983.1| - 0.27 11.8 2.4 80 3.9 0.0 3.9 3 1 0 3 3 3 0 ATP cone domain RHH_5 PF07878.11 gi|126180018|ref|YP_001047983.1| - 0.36 10.7 4.8 60 3.6 0.1 4.3 4 0 0 4 4 4 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 DUF2267 PF10025.9 gi|126180018|ref|YP_001047983.1| - 0.4 11.0 4.2 4.9 7.4 0.1 2.9 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2267) Ribosomal_L12 PF00542.19 gi|126180018|ref|YP_001047983.1| - 1.6 9.1 10.5 2.7 8.4 0.3 4.0 5 0 0 5 5 5 0 Ribosomal protein L7/L12 C-terminal domain HTH_24 PF13412.6 gi|126180022|ref|YP_001047987.1| - 3.1e-18 65.1 0.1 6.3e-10 38.5 0.0 3.0 2 1 1 3 3 3 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|126180022|ref|YP_001047987.1| - 4.4e-11 42.7 0.2 8.5e-07 28.9 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|126180022|ref|YP_001047987.1| - 7.6e-10 38.5 0.0 2.2e-05 24.2 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|126180022|ref|YP_001047987.1| - 5.1e-08 32.7 0.5 7.3e-06 25.8 0.1 2.3 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|126180022|ref|YP_001047987.1| - 8.6e-08 32.0 1.4 2.7e-06 27.3 0.2 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|126180022|ref|YP_001047987.1| - 3.9e-07 29.8 0.6 0.00023 20.9 0.1 2.4 2 0 0 2 2 2 2 IclR helix-turn-helix domain TrmB PF01978.19 gi|126180022|ref|YP_001047987.1| - 2.4e-06 27.4 0.1 0.0063 16.4 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|126180022|ref|YP_001047987.1| - 2.9e-05 23.9 0.0 0.00073 19.4 0.0 2.4 2 0 0 2 2 2 1 HTH domain HTH_34 PF13601.6 gi|126180022|ref|YP_001047987.1| - 3.4e-05 23.9 0.0 0.18 12.0 0.0 2.3 2 0 0 2 2 2 2 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|126180022|ref|YP_001047987.1| - 8.2e-05 22.9 0.0 0.0045 17.3 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|126180022|ref|YP_001047987.1| - 0.00017 21.7 0.0 0.00034 20.7 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|126180022|ref|YP_001047987.1| - 0.00018 21.3 0.3 0.04 13.7 0.2 2.5 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain GntR PF00392.21 gi|126180022|ref|YP_001047987.1| - 0.00025 20.6 0.3 0.89 9.2 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family FaeA PF04703.12 gi|126180022|ref|YP_001047987.1| - 0.00041 20.7 0.0 0.59 10.5 0.0 2.2 2 0 0 2 2 2 2 FaeA-like protein Sigma70_r4 PF04545.16 gi|126180022|ref|YP_001047987.1| - 0.00058 19.3 3.3 0.07 12.7 0.2 2.7 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_10 PF04967.12 gi|126180022|ref|YP_001047987.1| - 0.0085 15.9 0.0 0.61 9.9 0.0 2.3 2 0 0 2 2 2 1 HTH DNA binding domain HTH_28 PF13518.6 gi|126180022|ref|YP_001047987.1| - 0.014 15.5 0.1 0.093 12.9 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain RP-C PF03428.13 gi|126180022|ref|YP_001047987.1| - 0.024 14.3 0.8 4 7.0 0.3 2.1 2 0 0 2 2 2 0 Replication protein C N-terminal domain Cdc6_C PF09079.11 gi|126180022|ref|YP_001047987.1| - 0.032 14.2 0.0 0.07 13.1 0.0 1.5 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain HTH_27 PF13463.6 gi|126180022|ref|YP_001047987.1| - 0.033 14.7 0.1 0.055 14.0 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|126180022|ref|YP_001047987.1| - 0.034 14.5 0.0 0.058 13.8 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor BLACT_WH PF17778.1 gi|126180022|ref|YP_001047987.1| - 0.045 13.8 0.0 7.4 6.7 0.0 2.3 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain EI24 PF07264.11 gi|126180022|ref|YP_001047987.1| - 0.057 13.7 0.0 0.066 13.5 0.0 1.2 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) DprA_WH PF17782.1 gi|126180022|ref|YP_001047987.1| - 0.072 13.2 0.1 0.21 11.7 0.1 1.8 1 1 0 1 1 1 0 DprA winged helix domain HTH_1 PF00126.27 gi|126180022|ref|YP_001047987.1| - 0.08 12.9 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_40 PF14493.6 gi|126180022|ref|YP_001047987.1| - 0.086 13.3 0.0 0.25 11.8 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Mga PF08280.11 gi|126180022|ref|YP_001047987.1| - 0.093 12.8 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain LexA_DNA_bind PF01726.16 gi|126180022|ref|YP_001047987.1| - 0.12 12.2 0.0 0.62 9.9 0.0 2.0 2 0 0 2 2 2 0 LexA DNA binding domain PaaX PF07848.12 gi|126180022|ref|YP_001047987.1| - 0.12 12.6 0.7 0.4 10.9 0.1 2.0 2 0 0 2 2 2 0 PaaX-like protein CCB2_CCB4 PF11152.8 gi|126180023|ref|YP_001047988.1| - 0.026 13.9 0.1 0.037 13.3 0.1 1.2 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B, CCB2/CCB4 DUF4901 PF16244.5 gi|126180026|ref|YP_001047991.1| - 0.0013 18.2 0.0 0.0067 15.8 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4901) DUF2849 PF11011.8 gi|126180026|ref|YP_001047991.1| - 0.12 13.0 0.0 0.28 11.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2849) YPEB PF14620.6 gi|126180026|ref|YP_001047991.1| - 0.22 10.9 0.0 0.28 10.5 0.0 1.2 1 0 0 1 1 1 0 YpeB sporulation PepSY PF03413.19 gi|126180026|ref|YP_001047991.1| - 0.26 11.9 2.3 1.4 9.6 0.0 3.0 3 1 0 3 3 3 0 Peptidase propeptide and YPEB domain ABC2_membrane_2 PF12679.7 gi|126180027|ref|YP_001047992.1| - 4.3e-39 134.5 8.1 1.6e-38 132.6 8.1 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|126180027|ref|YP_001047992.1| - 2.4e-06 27.6 9.7 2.4e-06 27.6 9.7 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|126180027|ref|YP_001047992.1| - 0.0014 18.2 7.9 0.0014 18.2 7.9 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein DUF4131 PF13567.6 gi|126180027|ref|YP_001047992.1| - 0.21 11.2 4.1 1.7 8.3 2.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Filamin PF00630.19 gi|126180028|ref|YP_001047993.1| - 0.0012 19.6 0.0 0.0019 19.0 0.0 1.2 1 0 0 1 1 1 1 Filamin/ABP280 repeat DUF5060 PF16586.5 gi|126180028|ref|YP_001047993.1| - 0.09 13.2 0.1 0.15 12.5 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5060) Lactamase_B_2 PF12706.7 gi|126180030|ref|YP_001047995.1| - 4.7e-25 88.3 0.3 5.6e-25 88.0 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|126180030|ref|YP_001047995.1| - 4.7e-11 43.1 0.7 6.9e-11 42.5 0.7 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|126180030|ref|YP_001047995.1| - 4e-07 30.1 0.1 2.8e-06 27.3 0.1 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain AAA PF00004.29 gi|126180031|ref|YP_001047996.1| - 2.7e-34 118.5 0.0 6e-34 117.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|126180031|ref|YP_001047996.1| - 1.4e-10 40.8 0.0 3e-10 39.7 0.0 1.6 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|126180031|ref|YP_001047996.1| - 3.7e-05 23.7 0.1 0.0002 21.3 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|126180031|ref|YP_001047996.1| - 0.00032 21.1 0.1 0.026 14.9 0.0 2.4 1 1 0 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|126180031|ref|YP_001047996.1| - 0.00098 18.9 0.0 0.0024 17.6 0.0 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|126180031|ref|YP_001047996.1| - 0.0011 18.5 0.7 0.045 13.3 0.0 2.9 2 1 1 3 3 3 1 AAA domain AAA_18 PF13238.6 gi|126180031|ref|YP_001047996.1| - 0.0013 19.3 0.0 0.0077 16.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|126180031|ref|YP_001047996.1| - 0.0017 17.6 0.0 0.0052 16.0 0.0 1.7 1 1 1 2 2 2 1 TIP49 P-loop domain AAA_22 PF13401.6 gi|126180031|ref|YP_001047996.1| - 0.0022 18.3 0.1 0.32 11.3 0.0 2.8 1 1 2 3 3 3 1 AAA domain RuvB_N PF05496.12 gi|126180031|ref|YP_001047996.1| - 0.0022 17.7 0.0 0.0045 16.7 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|126180031|ref|YP_001047996.1| - 0.0036 17.5 0.0 0.009 16.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|126180031|ref|YP_001047996.1| - 0.011 14.9 0.0 0.021 14.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_11 PF13086.6 gi|126180031|ref|YP_001047996.1| - 0.025 14.4 0.0 0.041 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|126180031|ref|YP_001047996.1| - 0.029 13.8 0.0 0.066 12.6 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 gi|126180031|ref|YP_001047996.1| - 0.03 14.5 0.0 0.1 12.7 0.0 1.9 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_24 PF13479.6 gi|126180031|ref|YP_001047996.1| - 0.034 13.9 0.1 0.088 12.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|126180031|ref|YP_001047996.1| - 0.043 14.1 0.0 0.13 12.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|126180031|ref|YP_001047996.1| - 0.044 13.3 0.0 0.097 12.2 0.0 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region ResIII PF04851.15 gi|126180031|ref|YP_001047996.1| - 0.073 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Aida_N PF08910.10 gi|126180031|ref|YP_001047996.1| - 0.15 12.5 0.0 30 5.1 0.0 2.4 2 0 0 2 2 2 0 Aida N-terminus ABC_tran PF00005.27 gi|126180031|ref|YP_001047996.1| - 0.19 12.2 0.0 0.38 11.3 0.0 1.5 1 0 0 1 1 1 0 ABC transporter Peptidase_M24 PF00557.24 gi|126180032|ref|YP_001047997.1| - 2.4e-42 145.0 0.2 3.2e-42 144.6 0.2 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.24 gi|126180033|ref|YP_001047998.1| - 7.1e-45 153.3 0.2 1e-44 152.8 0.2 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|126180033|ref|YP_001047998.1| - 0.0007 20.3 0.0 0.0049 17.5 0.0 2.1 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain Phage_holin_3_6 PF07332.11 gi|126180034|ref|YP_001047999.1| - 0.031 14.3 5.4 0.036 14.1 5.4 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Pex24p PF06398.11 gi|126180034|ref|YP_001047999.1| - 0.39 9.6 1.3 0.38 9.7 1.3 1.0 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin DUF2207 PF09972.9 gi|126180034|ref|YP_001047999.1| - 0.61 8.8 4.2 0.62 8.8 4.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2244 PF10003.9 gi|126180034|ref|YP_001047999.1| - 0.74 9.5 5.3 1 9.0 5.3 1.3 1 1 0 1 1 1 0 Integral membrane protein (DUF2244) Insulin_TMD PF17870.1 gi|126180034|ref|YP_001047999.1| - 1.1 9.3 4.6 0.73 10.0 1.0 2.0 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment Gram_pos_anchor PF00746.21 gi|126180034|ref|YP_001047999.1| - 3.2 7.8 5.0 0.59 10.1 1.3 1.6 2 0 0 2 2 2 0 LPXTG cell wall anchor motif HTH_5 PF01022.20 gi|126180035|ref|YP_001048000.1| - 0.0026 17.6 0.1 0.014 15.3 0.1 2.0 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|126180035|ref|YP_001048000.1| - 0.0034 17.3 0.0 0.0054 16.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.12 gi|126180035|ref|YP_001048000.1| - 0.0078 16.6 0.0 0.011 16.1 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein MarR_2 PF12802.7 gi|126180035|ref|YP_001048000.1| - 0.021 14.7 0.1 0.041 13.8 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|126180035|ref|YP_001048000.1| - 0.034 13.7 0.0 0.056 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_12 PF08461.10 gi|126180035|ref|YP_001048000.1| - 0.057 13.4 0.2 0.12 12.3 0.2 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Rrf2 PF02082.20 gi|126180035|ref|YP_001048000.1| - 0.095 13.1 0.0 0.15 12.5 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Peptidase_S13 PF02113.15 gi|126180036|ref|YP_001048001.1| - 4.5e-56 190.4 0.0 6.9e-56 189.8 0.0 1.2 1 0 0 1 1 1 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family Transpeptidase PF00905.22 gi|126180036|ref|YP_001048001.1| - 0.011 15.0 0.1 0.54 9.4 0.0 2.1 2 0 0 2 2 2 0 Penicillin binding protein transpeptidase domain CorA PF01544.18 gi|126180037|ref|YP_001048002.1| - 7.1e-50 170.0 0.0 1e-49 169.4 0.0 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Ion_trans PF00520.31 gi|126180037|ref|YP_001048002.1| - 6.5e-09 35.4 0.5 6.5e-09 35.4 0.5 1.8 2 0 0 2 2 2 1 Ion transport protein Peripla_BP_2 PF01497.18 gi|126180040|ref|YP_001048005.1| - 5.8e-29 101.3 0.0 7.1e-29 101.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|126180041|ref|YP_001048006.1| - 2.4e-83 279.7 40.3 3.2e-83 279.3 40.3 1.1 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|126180042|ref|YP_001048007.1| - 2.9e-32 112.0 0.0 3.8e-32 111.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126180042|ref|YP_001048007.1| - 2.1e-07 31.0 0.0 0.00023 21.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126180042|ref|YP_001048007.1| - 9.6e-06 25.2 0.0 1.5e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|126180042|ref|YP_001048007.1| - 0.00019 21.9 0.1 0.00028 21.3 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|126180042|ref|YP_001048007.1| - 0.0002 20.7 0.0 0.00033 20.0 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA PF00004.29 gi|126180042|ref|YP_001048007.1| - 0.00091 19.7 0.0 0.0045 17.4 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|126180042|ref|YP_001048007.1| - 0.00098 19.7 0.0 0.0013 19.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|126180042|ref|YP_001048007.1| - 0.0051 16.2 0.1 0.025 14.0 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|126180042|ref|YP_001048007.1| - 0.014 15.1 0.1 0.028 14.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|126180042|ref|YP_001048007.1| - 0.018 14.7 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|126180042|ref|YP_001048007.1| - 0.019 15.3 0.3 0.1 12.8 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|126180042|ref|YP_001048007.1| - 0.024 14.8 0.1 0.26 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|126180042|ref|YP_001048007.1| - 0.037 13.8 0.0 0.082 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|126180042|ref|YP_001048007.1| - 0.089 12.7 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain NB-ARC PF00931.22 gi|126180042|ref|YP_001048007.1| - 0.13 11.5 0.8 0.23 10.6 0.2 1.6 2 0 0 2 2 2 0 NB-ARC domain DUF3303 PF11746.8 gi|126180043|ref|YP_001048008.1| - 1.9e-08 34.4 0.0 2.3e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3303) Voltage_CLC PF00654.20 gi|126180044|ref|YP_001048009.1| - 1.3e-20 74.0 38.3 1.3e-20 74.0 38.3 1.7 1 1 1 2 2 2 1 Voltage gated chloride channel PRC PF05239.16 gi|126180045|ref|YP_001048010.1| - 1.3e-12 47.6 0.2 1.9e-12 47.1 0.2 1.2 1 0 0 1 1 1 1 PRC-barrel domain Peptidase_M13_N PF05649.13 gi|126180048|ref|YP_001048013.1| - 3e-86 290.5 0.0 3.8e-86 290.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M13 Peptidase_M13 PF01431.21 gi|126180048|ref|YP_001048013.1| - 1.6e-55 187.9 0.0 2.4e-55 187.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M13 DUF3382 PF11862.8 gi|126180049|ref|YP_001048014.1| - 0.021 15.1 5.4 0.32 11.3 0.2 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF3382) DUF2975 PF11188.8 gi|126180049|ref|YP_001048014.1| - 0.024 14.5 0.1 0.024 14.5 0.1 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2975) Peptidase_M50 PF02163.22 gi|126180049|ref|YP_001048014.1| - 0.068 12.4 8.4 0.33 10.2 3.0 2.3 1 1 0 1 1 1 0 Peptidase family M50 DUF4149 PF13664.6 gi|126180049|ref|YP_001048014.1| - 6.4 7.2 13.0 0.055 13.8 2.5 2.8 4 0 0 4 4 4 0 Domain of unknown function (DUF4149) MtrF PF09472.10 gi|126180050|ref|YP_001048015.1| - 0.022 14.1 1.1 0.022 14.1 1.1 2.7 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) K_channel_TID PF07941.11 gi|126180051|ref|YP_001048016.1| - 7.6 7.1 13.6 1.3 9.5 9.4 1.9 2 0 0 2 2 2 0 Potassium channel Kv1.4 tandem inactivation domain DZR PF12773.7 gi|126180053|ref|YP_001048018.1| - 0.017 15.2 0.2 0.026 14.6 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_S27e PF01667.17 gi|126180053|ref|YP_001048018.1| - 0.021 14.5 0.2 0.031 14.0 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|126180053|ref|YP_001048018.1| - 0.024 14.1 1.9 0.049 13.2 1.9 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.13 gi|126180053|ref|YP_001048018.1| - 0.061 13.0 1.2 2.9 7.6 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_5 PF13719.6 gi|126180053|ref|YP_001048018.1| - 0.072 12.9 0.1 0.15 11.9 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Elf1 PF05129.13 gi|126180053|ref|YP_001048018.1| - 0.089 12.9 0.0 0.096 12.7 0.0 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_12 PF11331.8 gi|126180053|ref|YP_001048018.1| - 0.095 12.5 0.7 0.16 11.8 0.7 1.3 1 0 0 1 1 1 0 Probable zinc-ribbon domain zf-Di19 PF05605.12 gi|126180053|ref|YP_001048018.1| - 0.16 12.3 0.9 0.54 10.6 0.9 1.8 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Zn-ribbon_8 PF09723.10 gi|126180053|ref|YP_001048018.1| - 0.18 11.9 1.6 0.89 9.7 1.5 2.0 1 1 0 1 1 1 0 Zinc ribbon domain MFS_1 PF07690.16 gi|126180054|ref|YP_001048019.1| - 8e-27 94.1 64.3 3.3e-20 72.3 31.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|126180054|ref|YP_001048019.1| - 8e-05 21.7 14.2 8e-05 21.7 14.2 2.4 1 1 0 2 2 2 2 Sugar (and other) transporter AXE1 PF05448.12 gi|126180055|ref|YP_001048020.1| - 6.9e-06 24.9 0.0 0.0081 14.9 0.0 2.7 2 1 1 3 3 3 2 Acetyl xylan esterase (AXE1) DUF1100 PF06500.11 gi|126180055|ref|YP_001048020.1| - 9.1e-05 21.4 0.0 0.00014 20.8 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) Peptidase_S9 PF00326.21 gi|126180055|ref|YP_001048020.1| - 0.00025 20.6 0.1 0.0011 18.4 0.0 2.1 2 1 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 gi|126180055|ref|YP_001048020.1| - 0.00041 21.0 7.2 0.00041 21.0 7.2 1.9 1 1 1 2 2 2 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.18 gi|126180055|ref|YP_001048020.1| - 0.005 16.5 0.1 0.017 14.7 0.0 2.0 2 1 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|126180055|ref|YP_001048020.1| - 0.011 15.4 0.0 1 8.9 0.0 2.4 1 1 0 1 1 1 0 alpha/beta hydrolase fold BAAT_C PF08840.11 gi|126180055|ref|YP_001048020.1| - 0.013 15.4 0.0 0.076 12.9 0.0 2.0 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal DLH PF01738.18 gi|126180055|ref|YP_001048020.1| - 0.095 12.2 0.0 0.51 9.9 0.0 2.0 2 0 0 2 2 2 0 Dienelactone hydrolase family HEPN PF05168.14 gi|126180056|ref|YP_001048021.1| - 1.1e-14 54.5 0.2 1.4e-14 54.2 0.2 1.1 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|126180057|ref|YP_001048022.1| - 1.3e-06 28.6 0.0 3e-06 27.4 0.0 1.6 2 0 0 2 2 2 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|126180057|ref|YP_001048022.1| - 2.6e-06 27.4 0.0 5.5e-06 26.4 0.0 1.6 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase MarR_2 PF12802.7 gi|126180057|ref|YP_001048022.1| - 1.5e-05 24.7 0.1 3.1e-05 23.8 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|126180057|ref|YP_001048022.1| - 0.00023 21.0 0.0 0.00087 19.1 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|126180057|ref|YP_001048022.1| - 0.001 18.5 0.0 0.0017 17.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|126180057|ref|YP_001048022.1| - 0.0013 18.5 0.1 0.0022 17.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|126180057|ref|YP_001048022.1| - 0.013 15.5 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|126180057|ref|YP_001048022.1| - 0.015 15.8 0.3 0.042 14.4 0.1 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|126180057|ref|YP_001048022.1| - 0.07 13.1 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF294 PF03445.13 gi|126180057|ref|YP_001048022.1| - 0.087 12.6 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 RP-C PF03428.13 gi|126180057|ref|YP_001048022.1| - 0.1 12.3 0.1 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain DprA_WH PF17782.1 gi|126180057|ref|YP_001048022.1| - 0.13 12.4 0.8 0.27 11.4 0.1 1.9 2 0 0 2 2 2 0 DprA winged helix domain DUF2250 PF10007.9 gi|126180057|ref|YP_001048022.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Fic PF02661.18 gi|126180058|ref|YP_001048023.1| - 9.1e-20 71.4 0.0 2.2e-19 70.1 0.0 1.7 1 0 0 1 1 1 1 Fic/DOC family HTH_DeoR PF08220.12 gi|126180058|ref|YP_001048023.1| - 4.1e-05 23.2 0.0 8.8e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fic_N PF13784.6 gi|126180058|ref|YP_001048023.1| - 0.00054 19.9 0.1 0.0027 17.7 0.1 2.1 2 0 0 2 2 2 1 Fic/DOC family N-terminal DUF4172 PF13776.6 gi|126180058|ref|YP_001048023.1| - 0.0066 16.7 0.2 0.034 14.5 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4172) MarR_2 PF12802.7 gi|126180058|ref|YP_001048023.1| - 0.02 14.8 0.1 0.31 10.9 0.0 2.6 3 0 0 3 3 3 0 MarR family PuR_N PF09182.10 gi|126180058|ref|YP_001048023.1| - 0.024 14.6 0.0 0.063 13.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal HTH_11 PF08279.12 gi|126180058|ref|YP_001048023.1| - 0.066 13.2 0.1 0.23 11.4 0.1 2.0 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.6 gi|126180058|ref|YP_001048023.1| - 0.088 13.3 0.0 0.86 10.1 0.0 2.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF2115 PF09888.9 gi|126180059|ref|YP_001048024.1| - 8.4e-59 198.8 0.0 1e-58 198.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) NrfD PF03916.14 gi|126180061|ref|YP_001048026.1| - 0.36 10.4 8.2 0.15 11.7 1.5 2.2 2 0 0 2 2 2 0 Polysulphide reductase, NrfD PolC_DP2 PF03833.13 gi|126180064|ref|YP_001048029.1| - 0 1276.4 0.0 0 1274.1 0.0 1.8 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 Intein_splicing PF14890.6 gi|126180064|ref|YP_001048029.1| - 4.1e-09 36.5 0.0 8e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Intein splicing domain Hint PF01079.20 gi|126180064|ref|YP_001048029.1| - 0.0056 16.2 0.1 0.2 11.1 0.1 2.2 2 0 0 2 2 2 1 Hint module Yqai PF09466.10 gi|126180064|ref|YP_001048029.1| - 0.16 12.3 0.0 0.68 10.3 0.0 2.1 1 0 0 1 1 1 0 Hypothetical protein Yqai TerY_C PF15616.6 gi|126180064|ref|YP_001048029.1| - 0.64 10.1 7.7 1.9 8.6 7.7 1.7 1 0 0 1 1 1 0 TerY-C metal binding domain HypA PF01155.19 gi|126180064|ref|YP_001048029.1| - 3.1 7.9 18.9 1.7 8.7 0.1 4.2 3 1 1 4 4 4 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CheB_methylest PF01339.17 gi|126180065|ref|YP_001048030.1| - 4.2e-50 169.8 0.1 4.8e-50 169.6 0.1 1.0 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.24 gi|126180066|ref|YP_001048031.1| - 1.1e-22 80.3 2.6 1.2e-22 80.2 2.6 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DUF2007 PF09413.10 gi|126180066|ref|YP_001048031.1| - 0.051 13.7 1.4 0.45 10.7 0.3 2.3 1 1 1 2 2 2 0 Putative prokaryotic signal transducing protein HATPase_c PF02518.26 gi|126180067|ref|YP_001048032.1| - 1.4e-24 86.8 0.0 2.3e-24 86.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|126180067|ref|YP_001048032.1| - 3e-11 43.3 0.0 1.3e-07 31.6 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|126180067|ref|YP_001048032.1| - 3.1e-09 37.0 0.0 0.00015 21.9 0.0 2.9 2 1 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|126180067|ref|YP_001048032.1| - 1.1e-08 35.3 0.2 0.085 13.1 0.1 3.5 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|126180067|ref|YP_001048032.1| - 7.5e-08 32.2 0.1 0.0091 16.0 0.0 3.2 3 0 0 3 3 3 2 PAS domain HisKA PF00512.25 gi|126180067|ref|YP_001048032.1| - 3.9e-07 30.0 1.7 1.1e-06 28.6 0.2 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|126180067|ref|YP_001048032.1| - 2.4e-05 24.3 0.0 4.5e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|126180067|ref|YP_001048032.1| - 0.0011 18.9 0.0 0.0021 17.9 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HMMR_N PF15905.5 gi|126180067|ref|YP_001048032.1| - 0.004 16.7 0.2 0.0071 15.9 0.2 1.3 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal PAS_3 PF08447.12 gi|126180067|ref|YP_001048032.1| - 0.0051 17.1 0.1 0.02 15.2 0.0 2.1 2 0 0 2 2 1 1 PAS fold HATPase_c_3 PF13589.6 gi|126180067|ref|YP_001048032.1| - 0.0069 16.2 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYD-SP28 PF14772.6 gi|126180067|ref|YP_001048032.1| - 0.015 15.3 0.5 0.046 13.8 0.5 1.8 1 0 0 1 1 1 0 Sperm tail Nab1 PF04902.12 gi|126180067|ref|YP_001048032.1| - 0.17 12.3 1.8 0.33 11.3 1.8 1.3 1 0 0 1 1 1 0 Conserved region in Nab1 HEAT_2 PF13646.6 gi|126180068|ref|YP_001048033.1| - 5e-17 62.1 10.4 3.2e-10 40.2 4.1 2.1 2 0 0 2 2 2 2 HEAT repeats HEAT_PBS PF03130.16 gi|126180068|ref|YP_001048033.1| - 2e-12 46.5 16.4 0.0019 18.7 1.4 4.8 5 0 0 5 5 5 4 PBS lyase HEAT-like repeat Arm PF00514.23 gi|126180068|ref|YP_001048033.1| - 2e-09 37.2 0.2 0.00034 20.5 0.0 4.1 2 1 2 4 4 4 2 Armadillo/beta-catenin-like repeat HEAT PF02985.22 gi|126180068|ref|YP_001048033.1| - 0.0024 18.0 1.6 2.5 8.6 0.0 3.7 4 0 0 4 4 4 1 HEAT repeat Aconitase_B_N PF11791.8 gi|126180068|ref|YP_001048033.1| - 0.0052 16.9 0.1 23 5.0 0.0 3.2 2 1 1 3 3 3 0 Aconitate B N-terminal domain BRCC36_C PF18110.1 gi|126180068|ref|YP_001048033.1| - 0.02 15.0 0.1 10 6.3 0.0 4.0 1 1 4 5 5 5 0 BRCC36 C-terminal helical domain UCR_Fe-S_N PF10399.9 gi|126180068|ref|YP_001048033.1| - 0.054 12.8 7.7 0.067 12.6 5.2 2.4 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ERAP1_C PF11838.8 gi|126180068|ref|YP_001048033.1| - 0.077 12.5 0.4 1 8.8 0.3 2.0 1 1 1 2 2 2 0 ERAP1-like C-terminal domain GUN4_N PF16416.5 gi|126180068|ref|YP_001048033.1| - 0.18 11.8 0.0 4.8 7.3 0.0 2.3 2 1 0 2 2 2 0 ARM-like repeat domain, GUN4-N terminal HEAT_EZ PF13513.6 gi|126180068|ref|YP_001048033.1| - 0.43 11.2 10.6 7.6 7.2 0.2 4.1 2 2 1 3 3 3 0 HEAT-like repeat HEAT_2 PF13646.6 gi|126180069|ref|YP_001048034.1| - 4.7e-66 219.2 30.5 2.2e-16 60.0 3.2 4.7 1 1 4 5 5 5 5 HEAT repeats HEAT PF02985.22 gi|126180069|ref|YP_001048034.1| - 1.3e-32 109.0 3.3 0.0007 19.6 0.0 9.3 9 0 0 9 9 9 8 HEAT repeat HEAT_PBS PF03130.16 gi|126180069|ref|YP_001048034.1| - 9.5e-30 100.2 44.7 4.5e-06 26.8 0.1 9.5 9 0 0 9 9 9 8 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|126180069|ref|YP_001048034.1| - 8.8e-23 80.4 27.4 0.0097 16.4 0.1 9.5 9 1 1 10 10 10 9 HEAT-like repeat Arm PF00514.23 gi|126180069|ref|YP_001048034.1| - 3e-16 58.8 0.6 0.24 11.5 0.0 8.3 4 2 4 8 8 8 4 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|126180069|ref|YP_001048034.1| - 1.7e-06 28.2 0.0 0.36 10.9 0.0 5.4 2 2 4 6 6 6 1 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|126180069|ref|YP_001048034.1| - 0.0098 14.5 0.0 0.02 13.5 0.0 1.5 1 0 0 1 1 1 1 Adaptin N terminal region IFRD PF05004.13 gi|126180069|ref|YP_001048034.1| - 0.011 14.9 0.9 0.87 8.6 0.1 3.6 2 2 2 4 4 4 0 Interferon-related developmental regulator (IFRD) Vac14_Fab1_bd PF12755.7 gi|126180069|ref|YP_001048034.1| - 0.065 13.8 0.0 2.5e+02 2.4 0.0 4.4 3 1 2 5 5 5 0 Vacuolar 14 Fab1-binding region CLASP_N PF12348.8 gi|126180069|ref|YP_001048034.1| - 0.068 12.7 0.1 4.3 6.8 0.0 3.3 4 1 0 4 4 4 0 CLASP N terminal ERAP1_C PF11838.8 gi|126180069|ref|YP_001048034.1| - 0.22 11.0 0.0 3.9 6.9 0.0 2.6 1 1 2 3 3 3 0 ERAP1-like C-terminal domain DJ-1_PfpI PF01965.24 gi|126180070|ref|YP_001048035.1| - 9.4e-50 168.6 0.0 1.1e-49 168.4 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|126180070|ref|YP_001048035.1| - 0.00013 21.8 0.0 0.00015 21.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Pantoate_transf PF02548.15 gi|126180070|ref|YP_001048035.1| - 0.0059 16.0 0.1 0.02 14.3 0.0 1.7 2 0 0 2 2 2 1 Ketopantoate hydroxymethyltransferase GATase_5 PF13507.6 gi|126180070|ref|YP_001048035.1| - 0.0091 15.1 0.0 0.045 12.8 0.0 1.9 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.14 gi|126180070|ref|YP_001048035.1| - 0.034 13.8 0.0 0.045 13.4 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain E1-E2_ATPase PF00122.20 gi|126180071|ref|YP_001048036.1| - 5.2e-54 182.5 9.9 4.7e-53 179.4 1.6 2.7 3 0 0 3 3 3 2 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|126180071|ref|YP_001048036.1| - 2.2e-48 164.4 5.5 2.2e-48 164.4 5.5 1.9 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|126180071|ref|YP_001048036.1| - 1.4e-21 77.8 2.5 5.8e-21 75.7 2.5 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|126180071|ref|YP_001048036.1| - 8.5e-20 70.2 0.0 3.4e-19 68.3 0.0 2.0 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|126180071|ref|YP_001048036.1| - 1.7e-15 56.8 0.0 3.4e-15 55.9 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|126180071|ref|YP_001048036.1| - 1.5e-05 24.9 0.1 0.002 17.9 0.5 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|126180071|ref|YP_001048036.1| - 6.5e-05 23.4 0.1 0.00022 21.7 0.1 1.9 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Imm74 PF15603.6 gi|126180071|ref|YP_001048036.1| - 0.16 12.2 0.0 0.59 10.4 0.0 1.9 2 0 0 2 2 2 0 Immunity protein 74 CitMHS PF03600.16 gi|126180072|ref|YP_001048037.1| - 4.8e-49 167.2 31.7 4.8e-49 167.2 31.7 1.9 1 1 1 2 2 2 1 Citrate transporter ArsB PF02040.15 gi|126180072|ref|YP_001048037.1| - 1.4e-14 54.2 28.9 1.7e-14 54.0 28.9 1.1 1 0 0 1 1 1 1 Arsenical pump membrane protein HEAT_2 PF13646.6 gi|126180073|ref|YP_001048038.1| - 7.9e-10 39.0 1.1 9e-10 38.8 1.1 1.1 1 0 0 1 1 1 1 HEAT repeats HEAT PF02985.22 gi|126180073|ref|YP_001048038.1| - 6.8e-09 35.2 0.6 0.00015 21.7 0.0 2.3 2 0 0 2 2 2 2 HEAT repeat HEAT_PBS PF03130.16 gi|126180073|ref|YP_001048038.1| - 0.00044 20.7 5.6 0.0011 19.4 0.0 3.2 4 0 0 4 4 4 1 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|126180073|ref|YP_001048038.1| - 0.0016 18.9 1.6 0.95 10.0 0.1 2.4 1 1 0 2 2 2 2 HEAT-like repeat Cnd1 PF12717.7 gi|126180073|ref|YP_001048038.1| - 0.042 13.9 0.0 0.36 10.9 0.0 1.9 1 1 1 2 2 2 0 non-SMC mitotic condensation complex subunit 1 Cohesin_HEAT PF12765.7 gi|126180073|ref|YP_001048038.1| - 0.058 13.7 2.8 0.086 13.2 0.4 2.2 2 1 0 2 2 2 0 HEAT repeat associated with sister chromatid cohesion HEAT_2 PF13646.6 gi|126180074|ref|YP_001048039.1| - 3.1e-08 33.9 0.8 3.8e-08 33.6 0.8 1.2 1 0 0 1 1 1 1 HEAT repeats HEAT_PBS PF03130.16 gi|126180074|ref|YP_001048039.1| - 0.00063 20.2 2.8 0.001 19.6 0.0 2.5 3 0 0 3 3 3 1 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|126180074|ref|YP_001048039.1| - 0.0016 18.5 0.0 1.5 9.3 0.0 2.3 2 0 0 2 2 2 2 HEAT repeat Gln-synt_C PF00120.24 gi|126180075|ref|YP_001048040.1| - 2e-132 441.4 0.0 2.3e-132 441.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|126180075|ref|YP_001048040.1| - 1.9e-32 110.8 0.0 5.2e-32 109.4 0.0 1.8 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Bmp PF02608.14 gi|126180075|ref|YP_001048040.1| - 0.0014 17.7 0.0 0.0022 17.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Gln-synt_N_2 PF16952.5 gi|126180075|ref|YP_001048040.1| - 0.0036 17.1 0.0 0.024 14.5 0.0 2.1 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain GATase_2 PF00310.21 gi|126180076|ref|YP_001048041.1| - 5.6e-12 45.1 0.9 9.6e-10 37.7 0.9 2.1 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|126180076|ref|YP_001048041.1| - 1.4e-09 38.2 0.0 1.6e-08 34.8 0.0 2.1 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|126180076|ref|YP_001048041.1| - 2.1e-06 27.7 0.0 0.017 15.0 0.0 2.3 2 0 0 2 2 2 2 Glutamine amidotransferase domain Glu_synthase PF01645.17 gi|126180077|ref|YP_001048042.1| - 3.7e-135 450.8 0.0 3.7e-135 450.8 0.0 1.5 2 0 0 2 2 1 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|126180077|ref|YP_001048042.1| - 2.9e-12 46.6 0.0 1.7e-06 27.8 0.0 2.4 2 0 0 2 2 2 2 Glutamate synthase central domain FMN_dh PF01070.18 gi|126180077|ref|YP_001048042.1| - 5.8e-11 42.0 7.8 2.7e-08 33.3 3.7 3.0 3 0 0 3 3 3 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|126180077|ref|YP_001048042.1| - 2.5e-09 36.6 6.0 7.9e-08 31.7 5.5 2.4 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|126180077|ref|YP_001048042.1| - 1.6e-08 34.3 5.4 4.2e-08 33.0 5.4 1.6 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4_7 PF12838.7 gi|126180077|ref|YP_001048042.1| - 5.4e-08 33.3 17.6 9.4e-06 26.1 13.8 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126180077|ref|YP_001048042.1| - 1e-07 32.0 19.3 3e-05 24.1 14.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126180077|ref|YP_001048042.1| - 1.2e-07 31.8 19.9 1.1e-06 28.7 15.5 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126180077|ref|YP_001048042.1| - 3.1e-05 24.8 14.7 0.026 15.5 3.4 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|126180077|ref|YP_001048042.1| - 3.6e-05 23.8 12.8 3.6e-05 23.8 12.8 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126180077|ref|YP_001048042.1| - 0.00041 20.3 27.5 0.0025 17.8 2.4 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain His_biosynth PF00977.21 gi|126180077|ref|YP_001048042.1| - 0.0011 18.5 0.6 0.002 17.6 0.6 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|126180077|ref|YP_001048042.1| - 0.0018 17.6 4.1 0.013 14.7 4.1 2.0 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase Fer4 PF00037.27 gi|126180077|ref|YP_001048042.1| - 0.0044 16.8 2.3 0.0044 16.8 2.3 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain G3P_antiterm PF04309.12 gi|126180077|ref|YP_001048042.1| - 0.11 11.9 0.2 0.24 10.8 0.2 1.5 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator Fer4_2 PF12797.7 gi|126180077|ref|YP_001048042.1| - 0.13 12.4 29.0 0.042 13.9 2.2 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|126180077|ref|YP_001048042.1| - 0.82 10.3 22.5 5.7 7.6 3.8 3.4 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126180077|ref|YP_001048042.1| - 1.9 9.0 23.8 69 4.0 0.1 3.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126180077|ref|YP_001048042.1| - 2.9 8.6 25.6 1.1 10.0 5.5 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain DUF521 PF04412.13 gi|126180078|ref|YP_001048043.1| - 1.4e-150 501.5 0.0 1.5e-150 501.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) UbiD PF01977.16 gi|126180079|ref|YP_001048044.1| - 6.2e-98 328.3 0.6 7.1e-98 328.1 0.6 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Flavoprotein PF02441.19 gi|126180080|ref|YP_001048045.1| - 6.3e-24 84.5 0.0 7.7e-24 84.2 0.0 1.0 1 0 0 1 1 1 1 Flavoprotein HD PF01966.22 gi|126180081|ref|YP_001048046.1| - 3.2e-14 53.2 1.4 7e-14 52.1 0.4 2.1 2 0 0 2 2 2 1 HD domain HDOD PF08668.12 gi|126180081|ref|YP_001048046.1| - 0.023 14.2 0.0 0.059 12.8 0.0 1.7 1 0 0 1 1 1 0 HDOD domain Mrr_cat PF04471.12 gi|126180082|ref|YP_001048047.1| - 4e-12 46.2 0.1 8.6e-12 45.1 0.1 1.5 1 0 0 1 1 1 1 Restriction endonuclease zinc_ribbon_2 PF13240.6 gi|126180082|ref|YP_001048047.1| - 2.4e-08 33.4 5.2 2.4e-08 33.4 5.2 6.9 5 2 3 8 8 8 1 zinc-ribbon domain DZR PF12773.7 gi|126180082|ref|YP_001048047.1| - 1.4e-05 25.0 51.9 0.00012 22.1 1.0 4.7 2 1 2 4 4 4 3 Double zinc ribbon AHJR-like PF18743.1 gi|126180082|ref|YP_001048047.1| - 0.00028 20.5 0.0 0.00098 18.7 0.0 1.9 2 0 0 2 2 2 1 REase_AHJR-like UPF0547 PF10571.9 gi|126180082|ref|YP_001048047.1| - 0.00094 19.2 4.8 0.00094 19.2 4.8 6.1 6 3 0 6 6 4 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|126180082|ref|YP_001048047.1| - 0.0037 16.6 4.2 0.0037 16.6 4.2 6.8 6 2 1 7 7 6 2 zinc-ribbon domain zf-RING_2 PF13639.6 gi|126180082|ref|YP_001048047.1| - 0.0063 16.8 10.7 0.0063 16.8 10.7 4.4 3 1 1 4 4 4 1 Ring finger domain Hjc PF01870.18 gi|126180082|ref|YP_001048047.1| - 0.073 13.1 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) NERD PF08378.11 gi|126180082|ref|YP_001048047.1| - 0.091 13.2 0.0 0.23 12.0 0.0 1.7 1 0 0 1 1 1 0 Nuclease-related domain Nudix_N_2 PF14803.6 gi|126180082|ref|YP_001048047.1| - 0.19 11.7 0.1 0.19 11.7 0.1 7.6 8 1 1 9 9 8 0 Nudix N-terminal FYVE PF01363.21 gi|126180082|ref|YP_001048047.1| - 4.1 7.6 47.4 0.36 11.0 8.1 4.6 2 1 1 4 4 4 0 FYVE zinc finger UPF0052 PF01933.18 gi|126180084|ref|YP_001048049.1| - 2.5e-27 95.9 0.0 2.9e-27 95.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 UPF0052 PF01933.18 gi|126180085|ref|YP_001048050.1| - 1.2e-50 172.4 0.0 1.5e-50 172.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 NifU_N PF01592.16 gi|126180086|ref|YP_001048051.1| - 4.5e-48 162.6 0.0 5e-48 162.5 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain TSCPD PF12637.7 gi|126180086|ref|YP_001048051.1| - 0.029 14.6 0.1 0.054 13.8 0.1 1.6 1 1 0 1 1 1 0 TSCPD domain Sigma_M_inh PF17453.2 gi|126180086|ref|YP_001048051.1| - 0.19 12.2 0.0 0.26 11.7 0.0 1.2 1 0 0 1 1 1 0 Sigma-M inhibitor TusA PF01206.17 gi|126180087|ref|YP_001048052.1| - 1.8e-10 40.4 0.0 2.1e-10 40.3 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Pro-kuma_activ PF09286.11 gi|126180087|ref|YP_001048052.1| - 0.088 13.1 0.0 0.1 12.9 0.0 1.1 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain DUF1949 PF09186.11 gi|126180087|ref|YP_001048052.1| - 0.12 12.2 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1949) TusA PF01206.17 gi|126180088|ref|YP_001048053.1| - 2.4e-05 24.1 0.3 0.0034 17.2 0.3 2.2 1 1 0 1 1 1 1 Sulfurtransferase TusA HEAT_2 PF13646.6 gi|126180089|ref|YP_001048054.1| - 1.5e-55 185.6 34.8 7.8e-14 51.8 2.9 5.3 3 2 2 6 6 6 6 HEAT repeats HEAT PF02985.22 gi|126180089|ref|YP_001048054.1| - 5.6e-25 85.3 16.8 0.0037 17.4 0.0 11.0 12 0 0 12 12 12 6 HEAT repeat HEAT_PBS PF03130.16 gi|126180089|ref|YP_001048054.1| - 6.3e-14 51.2 60.1 0.00041 20.8 1.1 11.8 12 0 0 12 12 12 5 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|126180089|ref|YP_001048054.1| - 1.8e-13 50.7 37.4 0.044 14.3 0.6 10.6 7 4 4 11 11 11 6 HEAT-like repeat Cnd1 PF12717.7 gi|126180089|ref|YP_001048054.1| - 4.3e-09 36.6 0.0 0.04 14.0 0.0 4.7 3 1 0 4 4 4 2 non-SMC mitotic condensation complex subunit 1 Arm PF00514.23 gi|126180089|ref|YP_001048054.1| - 1.2e-08 34.7 0.3 0.32 11.1 0.0 6.6 6 1 1 7 7 7 2 Armadillo/beta-catenin-like repeat Aconitase_B_N PF11791.8 gi|126180089|ref|YP_001048054.1| - 0.00016 21.8 0.1 13 5.9 0.0 5.4 4 3 2 6 6 6 1 Aconitate B N-terminal domain Vac14_Fab1_bd PF12755.7 gi|126180089|ref|YP_001048054.1| - 0.0024 18.5 0.0 60 4.3 0.0 5.0 4 2 1 5 5 5 0 Vacuolar 14 Fab1-binding region Adaptin_N PF01602.20 gi|126180089|ref|YP_001048054.1| - 0.014 13.9 0.0 9.1 4.7 0.0 4.2 2 1 3 5 5 5 0 Adaptin N terminal region Glyoxalase_3 PF13468.6 gi|126180089|ref|YP_001048054.1| - 0.025 14.7 0.4 0.058 13.5 0.4 1.8 1 1 0 1 1 1 0 Glyoxalase-like domain RasGEF_N_2 PF14663.6 gi|126180089|ref|YP_001048054.1| - 0.14 12.6 0.0 7.4 7.0 0.0 3.2 4 0 0 4 4 4 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain YmgB PF10798.8 gi|126180089|ref|YP_001048054.1| - 0.2 11.5 0.0 2.8 7.8 0.0 2.3 2 0 0 2 2 2 0 Biofilm development protein YmgB/AriR PvlArgDC PF01862.16 gi|126180090|ref|YP_001048055.1| - 2.7e-62 209.4 0.0 3e-62 209.2 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DICT PF10069.9 gi|126180090|ref|YP_001048055.1| - 0.14 11.9 0.1 0.56 10.0 0.0 1.9 2 1 0 2 2 2 0 Sensory domain in DIguanylate Cyclases and Two-component system tRNA-synt_2 PF00152.20 gi|126180091|ref|YP_001048056.1| - 3.9e-87 292.3 0.0 4.6e-87 292.0 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|126180091|ref|YP_001048056.1| - 1.8e-14 53.5 0.3 3e-14 52.8 0.3 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|126180091|ref|YP_001048056.1| - 0.0015 18.0 0.2 0.018 14.5 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) Meth_synt_2 PF01717.18 gi|126180092|ref|YP_001048057.1| - 2.2e-47 161.9 2.7 1.7e-45 155.7 2.7 2.8 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|126180092|ref|YP_001048057.1| - 1.8e-06 27.7 0.0 2.5e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|126180092|ref|YP_001048057.1| - 0.00017 20.8 0.1 0.00032 20.0 0.1 1.5 1 1 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) ATPase PF06745.13 gi|126180093|ref|YP_001048058.1| - 1.7e-11 44.0 0.2 3.9e-05 23.1 0.1 2.1 1 1 0 2 2 2 2 KaiC AMP-binding PF00501.28 gi|126180094|ref|YP_001048059.1| - 1.5e-100 336.8 0.1 1.8e-100 336.5 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|126180094|ref|YP_001048059.1| - 5e-18 65.9 1.1 5e-18 65.9 1.1 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain MreB_Mbl PF06723.13 gi|126180094|ref|YP_001048059.1| - 0.016 14.0 0.0 0.028 13.3 0.0 1.3 1 0 0 1 1 1 0 MreB/Mbl protein Acetyltransf_1 PF00583.25 gi|126180095|ref|YP_001048060.1| - 3.3e-14 53.1 0.1 4.1e-14 52.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|126180095|ref|YP_001048060.1| - 5.7e-08 33.1 0.0 8.8e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|126180095|ref|YP_001048060.1| - 2.7e-07 30.5 0.0 6e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|126180095|ref|YP_001048060.1| - 2.7e-07 30.7 0.0 3.4e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|126180095|ref|YP_001048060.1| - 7.5e-07 29.1 0.0 9.6e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|126180095|ref|YP_001048060.1| - 0.00016 21.8 1.3 0.0003 21.0 1.3 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|126180095|ref|YP_001048060.1| - 0.00018 21.2 0.0 0.00079 19.1 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|126180095|ref|YP_001048060.1| - 0.012 16.2 0.1 0.019 15.7 0.1 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|126180095|ref|YP_001048060.1| - 0.089 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ CPBP PF02517.16 gi|126180096|ref|YP_001048061.1| - 3.4e-13 49.8 19.5 3.4e-13 49.8 19.5 2.8 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease AAA PF00004.29 gi|126180097|ref|YP_001048062.1| - 4.7e-98 324.7 0.0 2.2e-49 167.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|126180097|ref|YP_001048062.1| - 1.4e-26 92.4 0.0 7.2e-26 90.2 0.0 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|126180097|ref|YP_001048062.1| - 2e-23 81.9 5.1 2.3e-12 46.5 0.8 3.3 3 0 0 3 3 3 2 AAA+ lid domain RuvB_N PF05496.12 gi|126180097|ref|YP_001048062.1| - 3.9e-14 52.7 0.0 2e-06 27.7 0.0 2.7 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|126180097|ref|YP_001048062.1| - 5.5e-11 43.1 9.3 1.4e-05 25.5 0.1 4.4 4 2 0 4 4 4 2 AAA ATPase domain AAA_5 PF07728.14 gi|126180097|ref|YP_001048062.1| - 1.3e-10 41.4 0.5 0.0013 18.7 0.0 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|126180097|ref|YP_001048062.1| - 1.7e-10 40.7 0.2 0.00092 18.5 0.0 3.2 4 0 0 4 4 4 2 TIP49 P-loop domain AAA_2 PF07724.14 gi|126180097|ref|YP_001048062.1| - 2.3e-09 37.6 0.0 0.00013 22.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 gi|126180097|ref|YP_001048062.1| - 2.7e-09 37.3 0.0 0.001 19.3 0.0 3.2 4 0 0 4 4 2 2 AAA domain CDC48_2 PF02933.17 gi|126180097|ref|YP_001048062.1| - 3.4e-09 36.4 0.1 3.4e-08 33.1 0.3 2.4 2 1 1 3 3 2 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.6 gi|126180097|ref|YP_001048062.1| - 3.4e-09 37.1 2.2 0.027 14.8 0.1 4.1 2 2 2 4 4 4 2 AAA domain AAA_18 PF13238.6 gi|126180097|ref|YP_001048062.1| - 2.1e-07 31.6 0.0 0.035 14.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|126180097|ref|YP_001048062.1| - 8.5e-07 29.4 0.0 0.013 15.7 0.0 2.9 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|126180097|ref|YP_001048062.1| - 1.2e-06 28.1 0.3 0.057 12.8 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|126180097|ref|YP_001048062.1| - 1.4e-06 28.2 0.2 0.067 12.9 0.1 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_14 PF13173.6 gi|126180097|ref|YP_001048062.1| - 1.8e-06 28.0 0.0 0.019 15.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|126180097|ref|YP_001048062.1| - 6e-06 25.9 0.0 0.14 11.6 0.0 2.5 3 0 0 3 3 2 2 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|126180097|ref|YP_001048062.1| - 7.2e-06 26.3 0.0 0.12 12.7 0.0 2.5 2 0 0 2 2 2 2 RNA helicase ATPase PF06745.13 gi|126180097|ref|YP_001048062.1| - 1.4e-05 24.5 0.5 0.38 10.1 0.1 3.5 2 1 1 3 3 3 2 KaiC AAA_24 PF13479.6 gi|126180097|ref|YP_001048062.1| - 1.6e-05 24.7 0.1 0.21 11.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|126180097|ref|YP_001048062.1| - 2e-05 24.3 0.0 0.33 10.6 0.0 2.8 2 0 0 2 2 2 2 Sigma-54 interaction domain TsaE PF02367.17 gi|126180097|ref|YP_001048062.1| - 5.2e-05 23.2 0.0 0.42 10.6 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|126180097|ref|YP_001048062.1| - 7.4e-05 22.3 0.4 0.69 9.3 0.0 3.2 3 0 0 3 3 3 2 PhoH-like protein Parvo_NS1 PF01057.17 gi|126180097|ref|YP_001048062.1| - 7.8e-05 21.9 0.1 0.39 9.8 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Zeta_toxin PF06414.12 gi|126180097|ref|YP_001048062.1| - 9.9e-05 21.7 0.2 0.31 10.3 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin Sigma54_activ_2 PF14532.6 gi|126180097|ref|YP_001048062.1| - 0.00011 22.3 0.0 0.29 11.2 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|126180097|ref|YP_001048062.1| - 0.00024 21.0 0.0 0.65 9.9 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|126180097|ref|YP_001048062.1| - 0.00039 19.7 0.0 0.4 9.8 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_17 PF13207.6 gi|126180097|ref|YP_001048062.1| - 0.0005 20.5 0.9 2 8.8 0.0 3.9 4 0 0 4 4 4 1 AAA domain AAA_11 PF13086.6 gi|126180097|ref|YP_001048062.1| - 0.00053 19.9 0.0 0.78 9.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|126180097|ref|YP_001048062.1| - 0.00056 20.3 0.4 2 8.8 0.0 2.8 2 1 1 3 3 2 2 AAA domain AAA_25 PF13481.6 gi|126180097|ref|YP_001048062.1| - 0.00071 19.2 11.0 0.39 10.3 1.3 4.9 3 2 0 3 3 3 2 AAA domain ABC_tran PF00005.27 gi|126180097|ref|YP_001048062.1| - 0.00078 20.0 0.0 2.6 8.6 0.0 2.7 2 0 0 2 2 2 2 ABC transporter Cytidylate_kin PF02224.18 gi|126180097|ref|YP_001048062.1| - 0.00095 19.0 1.8 2.5 7.8 0.1 3.4 3 0 0 3 3 3 1 Cytidylate kinase DUF2075 PF09848.9 gi|126180097|ref|YP_001048062.1| - 0.0014 18.0 0.0 1.3 8.2 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Cytidylate_kin2 PF13189.6 gi|126180097|ref|YP_001048062.1| - 0.0014 18.8 0.3 0.95 9.6 0.0 3.0 3 0 0 3 3 2 1 Cytidylate kinase-like family AAA_30 PF13604.6 gi|126180097|ref|YP_001048062.1| - 0.0016 18.2 1.9 1.8 8.3 0.5 3.1 2 1 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|126180097|ref|YP_001048062.1| - 0.0022 18.0 0.3 4.7 7.1 0.0 3.7 2 2 0 3 3 3 0 ATPase domain predominantly from Archaea IPT PF01745.16 gi|126180097|ref|YP_001048062.1| - 0.0022 17.4 0.3 1.8 7.9 0.0 2.4 2 0 0 2 2 2 2 Isopentenyl transferase NB-ARC PF00931.22 gi|126180097|ref|YP_001048062.1| - 0.0023 17.1 0.0 2.1 7.5 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain Hexapep PF00132.24 gi|126180097|ref|YP_001048062.1| - 0.0033 17.1 0.1 0.015 15.0 0.0 2.1 2 0 0 2 2 2 1 Bacterial transferase hexapeptide (six repeats) NACHT PF05729.12 gi|126180097|ref|YP_001048062.1| - 0.0067 16.4 0.8 6.5 6.6 0.0 3.5 3 1 0 3 3 3 0 NACHT domain Rad17 PF03215.15 gi|126180097|ref|YP_001048062.1| - 0.01 15.8 0.0 5.7 6.8 0.0 2.7 2 1 0 2 2 2 0 Rad17 P-loop domain TniB PF05621.11 gi|126180097|ref|YP_001048062.1| - 0.016 14.6 0.0 16 4.8 0.0 3.4 4 0 0 4 4 3 0 Bacterial TniB protein Guanylate_kin PF00625.21 gi|126180097|ref|YP_001048062.1| - 0.019 14.7 0.6 49 3.6 0.0 4.0 2 2 2 4 4 4 0 Guanylate kinase NTPase_1 PF03266.15 gi|126180097|ref|YP_001048062.1| - 0.035 14.0 0.9 14 5.6 0.0 3.7 3 1 1 4 4 3 0 NTPase SKI PF01202.22 gi|126180097|ref|YP_001048062.1| - 0.039 14.1 0.0 11 6.1 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase ResIII PF04851.15 gi|126180097|ref|YP_001048062.1| - 0.04 13.9 0.0 18 5.3 0.0 3.0 3 0 0 3 3 3 0 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.16 gi|126180097|ref|YP_001048062.1| - 0.096 11.6 0.0 9.3 5.0 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase DUF111 PF01969.17 gi|126180098|ref|YP_001048063.1| - 2.3e-114 382.4 0.3 2.6e-114 382.2 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 YbbR PF07949.12 gi|126180098|ref|YP_001048063.1| - 0.13 12.7 0.0 0.29 11.5 0.0 1.6 1 0 0 1 1 1 0 YbbR-like protein Rad51 PF08423.11 gi|126180099|ref|YP_001048064.1| - 2.5e-27 95.7 0.0 3.7e-27 95.2 0.0 1.2 1 0 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|126180099|ref|YP_001048064.1| - 9.4e-14 51.3 0.4 6.1e-08 32.3 0.1 2.1 2 0 0 2 2 2 2 KaiC RecA PF00154.21 gi|126180099|ref|YP_001048064.1| - 1.2e-13 51.2 0.1 1.5e-13 50.9 0.1 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|126180099|ref|YP_001048064.1| - 4.9e-07 29.5 0.0 7.1e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|126180099|ref|YP_001048064.1| - 1.6e-05 24.7 0.0 2.4e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|126180099|ref|YP_001048064.1| - 0.0015 17.9 0.0 0.13 11.6 0.0 2.2 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain Zot PF05707.12 gi|126180099|ref|YP_001048064.1| - 0.0019 17.9 0.0 0.0028 17.3 0.0 1.4 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) CLP1_P PF16575.5 gi|126180099|ref|YP_001048064.1| - 0.029 14.1 0.0 0.057 13.2 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop ATPase_2 PF01637.18 gi|126180099|ref|YP_001048064.1| - 0.034 14.0 0.0 0.04 13.8 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|126180099|ref|YP_001048064.1| - 0.094 13.0 0.0 0.17 12.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|126180099|ref|YP_001048064.1| - 0.11 12.8 0.1 0.14 12.5 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|126180099|ref|YP_001048064.1| - 0.12 12.0 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|126180099|ref|YP_001048064.1| - 0.14 11.4 0.0 0.26 10.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DAP_epimerase PF01678.19 gi|126180100|ref|YP_001048065.1| - 1.5e-55 186.5 5.1 2.7e-30 105.0 0.0 2.1 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.11 gi|126180100|ref|YP_001048065.1| - 2.9e-05 23.3 0.9 0.0016 17.6 0.0 2.2 2 1 0 2 2 2 2 Proline racemase PPC PF04151.15 gi|126180101|ref|YP_001048066.1| - 0.017 16.2 0.4 0.031 15.4 0.4 1.5 1 0 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain FlgD_ig PF13860.6 gi|126180101|ref|YP_001048066.1| - 0.049 13.5 0.0 0.094 12.6 0.0 1.5 1 1 0 1 1 1 0 FlgD Ig-like domain PKD_3 PF16820.5 gi|126180101|ref|YP_001048066.1| - 0.059 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 PKD-like domain HTH_20 PF12840.7 gi|126180102|ref|YP_001048067.1| - 8e-16 57.9 0.2 3.2e-09 36.7 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.6 gi|126180102|ref|YP_001048067.1| - 2.8e-15 55.6 0.1 1.4e-06 27.7 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|126180102|ref|YP_001048067.1| - 9.9e-12 44.5 0.0 3e-05 23.8 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|126180102|ref|YP_001048067.1| - 1.2e-05 25.1 0.1 0.0018 18.2 0.0 2.4 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.7 gi|126180102|ref|YP_001048067.1| - 3.3e-05 23.7 0.3 0.00097 19.0 0.1 2.3 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|126180102|ref|YP_001048067.1| - 0.00013 21.8 0.0 0.006 16.4 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|126180102|ref|YP_001048067.1| - 0.00047 19.9 0.0 0.082 12.7 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|126180102|ref|YP_001048067.1| - 0.00058 19.6 0.0 0.22 11.4 0.0 2.4 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain Cdc6_C PF09079.11 gi|126180102|ref|YP_001048067.1| - 0.00061 19.7 1.0 3.7 7.6 0.0 3.1 2 1 1 3 3 3 2 CDC6, C terminal winged helix domain HTH_34 PF13601.6 gi|126180102|ref|YP_001048067.1| - 0.0016 18.5 0.0 0.76 10.0 0.0 2.5 3 0 0 3 3 2 1 Winged helix DNA-binding domain MarR PF01047.22 gi|126180102|ref|YP_001048067.1| - 0.01 15.7 0.0 1.7 8.6 0.0 2.3 2 0 0 2 2 2 0 MarR family Rrf2 PF02082.20 gi|126180102|ref|YP_001048067.1| - 0.023 15.1 0.0 0.48 10.8 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator HTH_41 PF14502.6 gi|126180102|ref|YP_001048067.1| - 0.026 14.2 0.0 0.62 9.8 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|126180102|ref|YP_001048067.1| - 0.035 14.6 0.0 0.32 11.5 0.0 2.2 1 1 1 2 2 2 0 Helix-turn-helix domain GerE PF00196.19 gi|126180102|ref|YP_001048067.1| - 0.16 11.5 0.0 0.34 10.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Penicillinase_R PF03965.16 gi|126180102|ref|YP_001048067.1| - 0.2 12.0 0.0 1.3 9.4 0.0 2.0 2 0 0 2 2 2 0 Penicillinase repressor Filamin PF00630.19 gi|126180103|ref|YP_001048068.1| - 0.044 14.6 0.0 0.15 12.8 0.0 1.8 1 1 0 1 1 1 0 Filamin/ABP280 repeat Peptidase_M28 PF04389.17 gi|126180104|ref|YP_001048069.1| - 1.4e-29 103.2 0.1 3.3e-28 98.7 0.2 2.7 2 1 0 2 2 2 1 Peptidase family M28 Peptidase_M42 PF05343.14 gi|126180104|ref|YP_001048069.1| - 5.2e-07 29.0 0.1 1.9e-06 27.1 0.1 1.7 2 0 0 2 2 2 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|126180104|ref|YP_001048069.1| - 2.9e-06 27.2 0.1 7.5e-06 25.8 0.0 1.7 2 1 0 2 2 2 1 Peptidase family M20/M25/M40 DUF4910 PF16254.5 gi|126180104|ref|YP_001048069.1| - 0.00073 18.5 0.0 0.0012 17.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4910) Nicastrin PF05450.15 gi|126180104|ref|YP_001048069.1| - 0.018 14.5 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 Nicastrin ABC2_membrane_2 PF12679.7 gi|126180105|ref|YP_001048070.1| - 3.6e-52 177.4 1.8 4.3e-52 177.2 1.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|126180105|ref|YP_001048070.1| - 2.2e-06 27.0 8.4 2.2e-06 27.0 8.4 2.2 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|126180105|ref|YP_001048070.1| - 1.5e-05 24.6 6.3 1.7e-05 24.5 4.8 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|126180105|ref|YP_001048070.1| - 5.4e-05 23.2 7.5 5.4e-05 23.2 7.5 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein DUF2070 PF09843.9 gi|126180105|ref|YP_001048070.1| - 0.38 9.0 8.8 0.56 8.4 8.8 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) CD47 PF04549.14 gi|126180105|ref|YP_001048070.1| - 0.71 10.1 10.5 0.15 12.2 6.5 1.8 2 0 0 2 2 2 0 CD47 transmembrane region ABC2_membrane PF01061.24 gi|126180105|ref|YP_001048070.1| - 1.3 8.4 15.8 0.55 9.6 12.7 2.0 2 1 0 2 2 2 0 ABC-2 type transporter DUF4131 PF13567.6 gi|126180105|ref|YP_001048070.1| - 4.1 7.0 0.0 4.1 7.0 0.0 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF3792 PF12670.7 gi|126180105|ref|YP_001048070.1| - 7.6 6.7 19.0 20 5.4 15.7 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3792) RNA_pol_L_2 PF13656.6 gi|126180108|ref|YP_001048073.1| - 1.5e-06 27.9 0.0 1.8e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Methyltransf_11 PF08241.12 gi|126180109|ref|YP_001048074.1| - 2.4e-16 60.1 0.0 4.3e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126180109|ref|YP_001048074.1| - 2.2e-15 57.1 0.0 4.6e-15 56.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126180109|ref|YP_001048074.1| - 2.3e-06 27.5 0.0 2.9e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|126180109|ref|YP_001048074.1| - 2.5e-06 27.4 0.0 3.1e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126180109|ref|YP_001048074.1| - 6.2e-06 26.9 0.0 1e-05 26.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|126180109|ref|YP_001048074.1| - 0.0043 16.9 0.0 0.012 15.4 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase MTS PF05175.14 gi|126180109|ref|YP_001048074.1| - 0.0056 16.2 0.0 0.0082 15.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|126180109|ref|YP_001048074.1| - 0.0056 16.7 0.0 0.0098 15.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|126180109|ref|YP_001048074.1| - 0.0091 15.3 0.0 0.012 14.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.13 gi|126180109|ref|YP_001048074.1| - 0.02 14.3 0.2 0.031 13.7 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.19 gi|126180109|ref|YP_001048074.1| - 0.17 12.0 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase eIF-5_eIF-2B PF01873.17 gi|126180110|ref|YP_001048075.1| - 1.7e-36 124.7 0.0 2.4e-36 124.1 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|126180110|ref|YP_001048075.1| - 0.0019 18.2 0.1 0.0047 16.9 0.1 1.7 1 0 0 1 1 1 1 TRAM domain Zn-ribbon_8 PF09723.10 gi|126180110|ref|YP_001048075.1| - 0.018 15.1 0.6 0.036 14.2 0.6 1.4 1 0 0 1 1 1 0 Zinc ribbon domain CDC48_N PF02359.18 gi|126180110|ref|YP_001048075.1| - 0.025 14.8 0.3 0.23 11.7 0.1 2.4 2 1 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain MqsA_antitoxin PF15731.5 gi|126180110|ref|YP_001048075.1| - 0.12 12.5 0.1 0.69 10.0 0.0 2.0 2 0 0 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Prok-RING_1 PF14446.6 gi|126180110|ref|YP_001048075.1| - 0.2 11.6 0.9 0.56 10.2 0.0 1.9 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.6 gi|126180110|ref|YP_001048075.1| - 0.29 10.6 1.9 3.5 7.2 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain ZF-HD_dimer PF04770.12 gi|126180110|ref|YP_001048075.1| - 0.4 11.0 1.5 1 9.8 1.6 1.7 1 1 0 1 1 1 0 ZF-HD protein dimerisation region zf_C2H2_13 PF18508.1 gi|126180110|ref|YP_001048075.1| - 0.79 9.4 0.1 0.79 9.4 0.1 2.5 3 0 0 3 3 3 0 Zinc finger domain Flavodoxin_5 PF12724.7 gi|126180111|ref|YP_001048076.1| - 4.7e-09 36.6 0.0 0.00042 20.6 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|126180111|ref|YP_001048076.1| - 4.6e-08 32.9 0.0 2.4e-05 24.1 0.0 2.1 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.7 gi|126180111|ref|YP_001048076.1| - 9.3e-08 31.9 0.0 1.5e-07 31.3 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin FMN_red PF03358.15 gi|126180111|ref|YP_001048076.1| - 2.5e-07 30.6 0.0 3e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.25 gi|126180111|ref|YP_001048076.1| - 0.00039 20.6 0.1 0.0019 18.4 0.1 2.1 1 1 0 1 1 1 1 Flavodoxin IlvN PF07991.12 gi|126180112|ref|YP_001048077.1| - 3.3e-77 257.7 0.1 4.3e-77 257.3 0.1 1.1 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|126180112|ref|YP_001048077.1| - 2.3e-62 209.5 0.1 3.2e-62 209.1 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 gi|126180112|ref|YP_001048077.1| - 1.9e-07 30.6 0.0 3.5e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|126180112|ref|YP_001048077.1| - 2.5e-07 30.9 0.0 4.8e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.15 gi|126180112|ref|YP_001048077.1| - 1.9e-05 24.9 0.0 3.5e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|126180112|ref|YP_001048077.1| - 0.00017 22.1 0.0 0.00039 20.9 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|126180112|ref|YP_001048077.1| - 0.0025 17.4 0.0 0.0048 16.6 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA CoA_binding PF02629.19 gi|126180112|ref|YP_001048077.1| - 0.021 15.5 0.0 0.062 14.0 0.0 1.8 1 0 0 1 1 1 0 CoA binding domain GCHY-1 PF02649.14 gi|126180113|ref|YP_001048078.1| - 1.6e-81 273.6 2.3 1.8e-81 273.5 2.3 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.18 gi|126180113|ref|YP_001048078.1| - 0.0073 16.9 0.1 0.21 12.2 0.0 3.0 2 1 0 2 2 2 1 Dihydroneopterin aldolase NiFeSe_Hases PF00374.19 gi|126180114|ref|YP_001048079.1| - 8.8e-31 107.4 10.5 6.8e-16 58.2 0.8 4.3 2 1 1 3 3 3 3 Nickel-dependent hydrogenase HycI PF01750.18 gi|126180115|ref|YP_001048080.1| - 4.1e-29 101.0 0.0 5.1e-29 100.7 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease Oxidored_q6 PF01058.22 gi|126180116|ref|YP_001048081.1| - 1.7e-23 82.9 1.1 1.7e-23 82.9 1.1 1.8 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|126180116|ref|YP_001048081.1| - 4.4e-12 45.3 17.8 6.5e-07 28.9 3.0 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126180116|ref|YP_001048081.1| - 6.9e-09 36.2 21.4 1.5e-06 28.7 12.7 3.9 3 2 1 4 4 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126180116|ref|YP_001048081.1| - 1.8e-07 30.9 18.3 8.2e-06 25.7 1.5 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126180116|ref|YP_001048081.1| - 2.2e-07 30.9 11.7 2.2e-07 30.9 11.7 3.3 4 1 0 4 4 4 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126180116|ref|YP_001048081.1| - 4.3e-07 30.0 10.1 4.3e-07 30.0 10.1 2.9 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126180116|ref|YP_001048081.1| - 7.4e-06 26.0 15.5 0.0045 17.1 0.4 3.6 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126180116|ref|YP_001048081.1| - 1.3e-05 26.1 11.4 0.0051 17.7 1.1 3.4 4 0 0 4 4 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|126180116|ref|YP_001048081.1| - 4.5e-05 23.3 19.4 0.0056 16.7 2.4 3.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|126180116|ref|YP_001048081.1| - 0.00036 21.0 11.5 0.0048 17.4 0.7 3.2 3 0 0 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|126180116|ref|YP_001048081.1| - 0.0023 18.3 1.2 0.0023 18.3 1.2 4.1 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|126180116|ref|YP_001048081.1| - 0.017 15.6 18.5 0.053 14.0 2.1 3.2 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126180116|ref|YP_001048081.1| - 0.019 15.5 19.7 0.2 12.2 2.8 3.2 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|126180116|ref|YP_001048081.1| - 0.22 12.4 15.8 1.4 9.8 0.4 3.5 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|126180116|ref|YP_001048081.1| - 1.6 9.5 20.7 0.39 11.5 1.8 4.3 2 2 1 3 3 3 0 4Fe-4S single cluster domain FrhB_FdhB_C PF04432.13 gi|126180117|ref|YP_001048082.1| - 4.8e-43 146.6 0.1 6.7e-43 146.2 0.1 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|126180117|ref|YP_001048082.1| - 1.8e-34 117.7 0.0 3.3e-34 116.9 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term AdoMet_dc PF02675.15 gi|126180118|ref|YP_001048083.1| - 6e-23 81.1 0.0 9.7e-23 80.5 0.0 1.3 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase LigD_N PF13298.6 gi|126180119|ref|YP_001048084.1| - 6.1e-40 135.7 0.0 7.9e-40 135.4 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) DUF87 PF01935.17 gi|126180120|ref|YP_001048085.1| - 4.4e-08 33.5 0.2 3.7e-07 30.5 0.0 2.4 2 1 0 2 2 2 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|126180120|ref|YP_001048085.1| - 1.4e-06 27.5 0.1 0.0038 16.2 0.1 2.2 2 0 0 2 2 2 2 AAA-like domain TrwB_AAD_bind PF10412.9 gi|126180120|ref|YP_001048085.1| - 3.6e-06 26.1 0.1 0.0032 16.4 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.12 gi|126180120|ref|YP_001048085.1| - 6.4e-06 25.0 0.1 1.8e-05 23.6 0.0 1.6 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) AAA_19 PF13245.6 gi|126180120|ref|YP_001048085.1| - 0.0008 19.8 0.1 0.0058 17.0 0.0 2.3 4 0 0 4 4 2 1 AAA domain AAA_22 PF13401.6 gi|126180120|ref|YP_001048085.1| - 0.0011 19.2 0.0 0.16 12.3 0.0 2.8 2 1 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|126180120|ref|YP_001048085.1| - 0.0016 17.9 0.0 0.011 15.0 0.0 2.0 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA PF00004.29 gi|126180120|ref|YP_001048085.1| - 0.022 15.2 0.0 3.5 8.1 0.0 2.9 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|126180120|ref|YP_001048085.1| - 0.027 14.5 0.0 0.056 13.5 0.0 1.6 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|126180120|ref|YP_001048085.1| - 0.03 14.0 0.0 0.12 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|126180120|ref|YP_001048085.1| - 0.033 13.5 0.0 0.059 12.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Pox_A32 PF04665.12 gi|126180120|ref|YP_001048085.1| - 0.066 12.7 0.0 13 5.2 0.0 2.4 3 0 0 3 3 3 0 Poxvirus A32 protein Zot PF05707.12 gi|126180120|ref|YP_001048085.1| - 0.075 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_6 PF12774.7 gi|126180120|ref|YP_001048085.1| - 0.17 10.8 0.1 1.7 7.5 0.0 2.5 3 0 0 3 3 3 0 Hydrolytic ATP binding site of dynein motor region AAA_16 PF13191.6 gi|126180120|ref|YP_001048085.1| - 0.18 12.2 0.0 0.73 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain HATPase_c PF02518.26 gi|126180122|ref|YP_001048087.1| - 1.7e-21 76.8 0.0 3.4e-21 75.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|126180122|ref|YP_001048087.1| - 7.7e-11 42.2 0.1 1.4e-10 41.3 0.1 1.5 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|126180122|ref|YP_001048087.1| - 4.5e-09 36.5 0.0 9.8e-09 35.4 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|126180122|ref|YP_001048087.1| - 9.1e-09 35.5 0.1 2.9e-08 33.9 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 gi|126180122|ref|YP_001048087.1| - 3.3e-07 30.3 0.0 1e-06 28.7 0.0 1.8 2 0 0 2 2 2 1 PAS fold DUF4118 PF13493.6 gi|126180122|ref|YP_001048087.1| - 0.00037 20.2 5.5 0.00075 19.3 5.5 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) HATPase_c_2 PF13581.6 gi|126180122|ref|YP_001048087.1| - 0.00058 19.8 0.0 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|126180122|ref|YP_001048087.1| - 0.0094 16.0 0.0 0.027 14.5 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.6 gi|126180122|ref|YP_001048087.1| - 0.018 15.0 0.0 0.031 14.2 0.0 1.4 1 0 0 1 1 1 0 GHKL domain HisKA PF00512.25 gi|126180122|ref|YP_001048087.1| - 0.03 14.3 1.0 0.36 10.9 0.1 2.4 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain DUF3488 PF11992.8 gi|126180122|ref|YP_001048087.1| - 2.1 7.2 8.0 3.1 6.6 8.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) DUF2124 PF09897.9 gi|126180123|ref|YP_001048088.1| - 2.4e-53 179.9 0.0 2.7e-53 179.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) DUF2267 PF10025.9 gi|126180124|ref|YP_001048089.1| - 0.08 13.2 0.0 0.095 13.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) Tautomerase PF01361.21 gi|126180125|ref|YP_001048090.1| - 3.5e-14 52.4 0.1 3.7e-14 52.4 0.1 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.6 gi|126180125|ref|YP_001048090.1| - 6.5e-06 26.2 0.1 7.3e-06 26.0 0.1 1.1 1 0 0 1 1 1 1 Tautomerase enzyme CHMI PF02962.15 gi|126180125|ref|YP_001048090.1| - 0.017 15.4 0.0 0.018 15.3 0.0 1.1 1 0 0 1 1 1 0 5-carboxymethyl-2-hydroxymuconate isomerase Tautomerase_3 PF14832.6 gi|126180125|ref|YP_001048090.1| - 0.047 13.9 0.0 0.048 13.9 0.0 1.0 1 0 0 1 1 1 0 Putative oxalocrotonate tautomerase enzyme polyprenyl_synt PF00348.17 gi|126180126|ref|YP_001048091.1| - 5.7e-33 114.1 0.0 7.9e-33 113.6 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase APH PF01636.23 gi|126180127|ref|YP_001048092.1| - 8.5e-11 42.2 0.9 8.5e-11 42.2 0.9 1.7 1 1 1 2 2 2 1 Phosphotransferase enzyme family HAD_2 PF13419.6 gi|126180128|ref|YP_001048093.1| - 3.7e-16 59.7 0.0 5.6e-16 59.1 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|126180128|ref|YP_001048093.1| - 9.3e-09 35.9 0.3 2.1e-07 31.5 0.3 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|126180128|ref|YP_001048093.1| - 3.9e-07 30.0 0.0 8.5e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HEAT_2 PF13646.6 gi|126180129|ref|YP_001048094.1| - 0.001 19.4 4.2 0.0049 17.2 0.4 3.0 3 1 0 3 3 3 1 HEAT repeats HEAT PF02985.22 gi|126180129|ref|YP_001048094.1| - 0.0047 17.1 0.1 0.02 15.1 0.1 2.2 1 0 0 1 1 1 1 HEAT repeat GTP_EFTU PF00009.27 gi|126180130|ref|YP_001048095.1| - 2.1e-14 53.5 0.0 3.3e-12 46.3 0.0 2.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|126180130|ref|YP_001048095.1| - 2.8e-10 40.3 0.0 4.7e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.22 gi|126180130|ref|YP_001048095.1| - 2.7e-07 30.3 0.0 4.3e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Ras family ATP_bind_1 PF03029.17 gi|126180130|ref|YP_001048095.1| - 6.7e-06 26.1 0.0 0.00053 19.8 0.0 2.1 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|126180130|ref|YP_001048095.1| - 1.5e-05 25.2 0.0 2.2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 gi|126180130|ref|YP_001048095.1| - 0.00021 21.4 0.0 0.00055 20.0 0.0 1.7 2 0 0 2 2 2 1 Dynamin family Arf PF00025.21 gi|126180130|ref|YP_001048095.1| - 0.0011 18.4 0.0 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 ADP-ribosylation factor family FeoB_N PF02421.18 gi|126180130|ref|YP_001048095.1| - 0.0036 16.9 0.0 0.016 14.8 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B IIGP PF05049.13 gi|126180130|ref|YP_001048095.1| - 0.22 10.6 0.0 0.29 10.2 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) DUF3404 PF11884.8 gi|126180131|ref|YP_001048096.1| - 0.22 10.7 0.0 0.26 10.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3404) HEAT_2 PF13646.6 gi|126180132|ref|YP_001048097.1| - 6.2e-29 100.2 21.9 1.1e-16 61.0 7.4 2.3 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.16 gi|126180132|ref|YP_001048097.1| - 6.7e-21 72.8 34.7 1.2e-05 25.5 1.7 5.0 5 0 0 5 5 5 4 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|126180132|ref|YP_001048097.1| - 8.6e-18 62.9 2.4 0.0022 18.1 0.0 5.2 5 0 0 5 5 5 4 HEAT repeat HEAT_EZ PF13513.6 gi|126180132|ref|YP_001048097.1| - 1.9e-12 47.4 12.1 1.4e-05 25.5 0.5 5.0 3 2 2 5 5 5 3 HEAT-like repeat Arm PF00514.23 gi|126180132|ref|YP_001048097.1| - 3e-07 30.3 2.8 0.14 12.3 0.0 4.6 3 2 2 5 5 5 3 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|126180132|ref|YP_001048097.1| - 0.00023 21.2 0.0 0.65 10.0 0.0 2.8 1 1 1 2 2 2 2 non-SMC mitotic condensation complex subunit 1 DNA_alkylation PF08713.11 gi|126180132|ref|YP_001048097.1| - 0.0045 16.7 2.5 0.038 13.7 2.5 2.1 1 1 0 1 1 1 1 DNA alkylation repair enzyme RasGEF_N_2 PF14663.6 gi|126180132|ref|YP_001048097.1| - 0.0048 17.3 0.0 12 6.3 0.0 3.4 1 1 2 3 3 3 1 Rapamycin-insensitive companion of mTOR RasGEF_N domain Vac14_Fab1_bd PF12755.7 gi|126180132|ref|YP_001048097.1| - 0.0076 16.8 0.0 2.6 8.7 0.0 3.0 2 1 1 3 3 3 1 Vacuolar 14 Fab1-binding region IFRD PF05004.13 gi|126180132|ref|YP_001048097.1| - 0.0084 15.3 2.9 0.65 9.0 0.2 2.8 1 1 2 3 3 3 2 Interferon-related developmental regulator (IFRD) Aconitase_B_N PF11791.8 gi|126180132|ref|YP_001048097.1| - 0.019 15.1 0.0 5.7 7.0 0.0 2.5 1 1 0 2 2 2 0 Aconitate B N-terminal domain UPF0147 PF03685.13 gi|126180132|ref|YP_001048097.1| - 0.051 13.6 3.9 10 6.3 0.0 3.7 3 1 0 3 3 3 0 Uncharacterised protein family (UPF0147) DUF3458_C PF17432.2 gi|126180133|ref|YP_001048098.1| - 4.4e-35 121.6 5.5 7.5e-35 120.8 5.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3458_C) ARM repeats Peptidase_M1 PF01433.20 gi|126180133|ref|YP_001048098.1| - 4.4e-23 82.0 0.0 6.2e-23 81.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M1 domain DUF3458 PF11940.8 gi|126180133|ref|YP_001048098.1| - 5.5e-09 36.4 0.0 1.6e-08 34.9 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF3458) Ig-like fold Peptidase_M1_N PF17900.1 gi|126180133|ref|YP_001048098.1| - 4e-08 33.7 0.0 6.3e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain Lactamase_B PF00753.27 gi|126180134|ref|YP_001048099.1| - 9.8e-13 48.6 2.9 2.3e-12 47.3 2.9 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|126180134|ref|YP_001048099.1| - 6.4e-07 29.1 0.0 9.1e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|126180134|ref|YP_001048099.1| - 0.028 14.3 0.0 0.042 13.7 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain 2_5_RNA_ligase2 PF13563.6 gi|126180136|ref|YP_001048101.1| - 1.8e-06 27.9 0.0 2.9e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|126180136|ref|YP_001048101.1| - 0.12 12.6 0.0 17 5.7 0.0 2.3 2 0 0 2 2 2 0 LigT like Phosphoesterase DUF11 PF01345.18 gi|126180138|ref|YP_001048103.1| - 1.1e-11 44.8 4.5 0.0019 18.4 0.1 4.7 4 1 0 4 4 4 3 Domain of unknown function DUF11 CARDB PF07705.11 gi|126180138|ref|YP_001048103.1| - 8.1e-10 38.9 0.2 6.3e-05 23.2 0.0 3.3 3 1 1 4 4 4 2 CARDB NPCBM_assoc PF10633.9 gi|126180138|ref|YP_001048103.1| - 4.8e-07 29.9 0.5 0.0059 16.8 0.0 4.1 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase A2M PF00207.22 gi|126180138|ref|YP_001048103.1| - 0.082 12.8 0.0 0.88 9.5 0.0 2.5 2 0 0 2 2 2 0 Alpha-2-macroglobulin family DUF4832 PF16116.5 gi|126180138|ref|YP_001048103.1| - 0.16 11.8 0.0 6.1 6.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4832) TRAP_beta PF05753.14 gi|126180138|ref|YP_001048103.1| - 0.18 11.2 0.3 5.7 6.3 0.0 3.2 2 2 0 2 2 2 0 Translocon-associated protein beta (TRAPB) Glyco_hydro_66 PF13199.6 gi|126180138|ref|YP_001048103.1| - 0.19 10.3 0.0 0.26 9.9 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 66 FtsX PF02687.21 gi|126180139|ref|YP_001048104.1| - 1.4e-10 41.5 1.4 1.4e-10 41.5 1.4 3.2 3 0 0 3 3 3 1 FtsX-like permease family GreA_GreB PF01272.19 gi|126180139|ref|YP_001048104.1| - 0.038 13.9 0.0 0.086 12.7 0.0 1.6 1 0 0 1 1 1 0 Transcription elongation factor, GreA/GreB, C-term Peptidase_U32_C PF16325.5 gi|126180139|ref|YP_001048104.1| - 0.14 12.4 0.0 0.28 11.5 0.0 1.5 1 0 0 1 1 1 0 Peptidase family U32 C-terminal domain SUR7 PF06687.12 gi|126180139|ref|YP_001048104.1| - 1.4 8.5 6.6 3.7 7.1 2.7 2.7 3 0 0 3 3 3 0 SUR7/PalI family ABC_tran PF00005.27 gi|126180140|ref|YP_001048105.1| - 1e-33 116.8 0.0 1.4e-33 116.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126180140|ref|YP_001048105.1| - 7.5e-07 29.2 1.0 0.017 14.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126180140|ref|YP_001048105.1| - 0.00012 21.6 0.1 0.088 12.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|126180140|ref|YP_001048105.1| - 0.0013 18.4 0.1 0.0026 17.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|126180140|ref|YP_001048105.1| - 0.0061 17.0 0.5 0.014 15.8 0.5 1.6 1 1 0 1 1 1 1 AAA ATPase domain FtsK_SpoIIIE PF01580.18 gi|126180140|ref|YP_001048105.1| - 0.026 13.9 0.0 0.061 12.7 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_25 PF13481.6 gi|126180140|ref|YP_001048105.1| - 0.026 14.1 0.0 0.39 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|126180140|ref|YP_001048105.1| - 0.026 14.4 0.1 0.054 13.4 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|126180140|ref|YP_001048105.1| - 0.035 14.4 0.2 0.77 10.0 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.6 gi|126180140|ref|YP_001048105.1| - 0.11 13.1 0.9 0.22 12.0 0.9 1.9 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|126180140|ref|YP_001048105.1| - 0.17 12.0 0.1 0.78 9.8 0.1 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase Inhibitor_I42 PF09394.10 gi|126180142|ref|YP_001048107.1| - 7.4e-26 90.4 1.0 1.1e-25 89.9 1.0 1.3 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 ASH PF15780.5 gi|126180142|ref|YP_001048107.1| - 0.3 11.3 1.6 0.46 10.7 1.6 1.3 1 0 0 1 1 1 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Lactamase_B PF00753.27 gi|126180143|ref|YP_001048108.1| - 1e-20 74.6 4.0 1.2e-20 74.4 4.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Mucin PF01456.17 gi|126180144|ref|YP_001048109.1| - 0.046 13.7 7.2 9.6 6.2 8.6 2.1 2 0 0 2 2 2 0 Mucin-like glycoprotein Alpha_GJ PF03229.13 gi|126180144|ref|YP_001048109.1| - 0.39 11.3 4.0 0.64 10.6 4.0 1.3 1 0 0 1 1 1 0 Alphavirus glycoprotein J GTP_EFTU PF00009.27 gi|126180145|ref|YP_001048110.1| - 4.9e-65 218.7 0.2 8e-65 218.0 0.2 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_II PF14492.6 gi|126180145|ref|YP_001048110.1| - 3.1e-25 88.1 0.2 9.8e-25 86.5 0.2 1.9 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_IV PF03764.18 gi|126180145|ref|YP_001048110.1| - 4.8e-25 87.7 0.1 2.2e-24 85.5 0.0 2.3 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_C PF00679.24 gi|126180145|ref|YP_001048110.1| - 2.9e-23 81.7 0.2 1.2e-22 79.7 0.0 2.3 2 1 1 3 3 3 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|126180145|ref|YP_001048110.1| - 2.9e-13 50.0 2.8 4e-13 49.6 0.4 2.6 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|126180145|ref|YP_001048110.1| - 0.00053 20.1 0.0 0.0013 18.8 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|126180145|ref|YP_001048110.1| - 0.018 14.9 0.1 0.051 13.4 0.0 1.8 2 0 0 2 2 2 0 Class II release factor RF3, C-terminal domain UTP15_C PF09384.10 gi|126180145|ref|YP_001048110.1| - 0.03 14.0 0.1 0.075 12.7 0.1 1.6 1 0 0 1 1 1 0 UTP15 C terminal RsgA_GTPase PF03193.16 gi|126180145|ref|YP_001048110.1| - 0.16 11.8 0.9 0.34 10.8 0.4 1.7 2 0 0 2 2 2 0 RsgA GTPase Ribosomal_S7 PF00177.21 gi|126180146|ref|YP_001048111.1| - 7.4e-40 136.0 4.3 9.5e-40 135.7 4.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Crr6 PF08847.11 gi|126180146|ref|YP_001048111.1| - 0.034 13.8 0.0 0.054 13.1 0.0 1.3 1 0 0 1 1 1 0 Chlororespiratory reduction 6 Ribosom_S12_S23 PF00164.25 gi|126180147|ref|YP_001048112.1| - 8.4e-47 157.5 0.7 1e-46 157.3 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 PTPS PF01242.19 gi|126180148|ref|YP_001048113.1| - 4.8e-34 117.0 0.3 5.6e-34 116.8 0.3 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Radical_SAM PF04055.21 gi|126180149|ref|YP_001048114.1| - 4.4e-15 56.4 0.3 6.4e-15 55.9 0.3 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|126180149|ref|YP_001048114.1| - 5.4e-12 45.9 0.2 8.5e-12 45.3 0.2 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|126180149|ref|YP_001048114.1| - 1.4e-09 38.4 0.4 1.8e-09 38.0 0.4 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain QueC PF06508.13 gi|126180150|ref|YP_001048115.1| - 6.8e-73 244.6 0.0 7.7e-73 244.5 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|126180150|ref|YP_001048115.1| - 2.5e-08 33.7 0.0 7.6e-07 28.9 0.0 2.2 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) AP_endonuc_2 PF01261.24 gi|126180150|ref|YP_001048115.1| - 2.2e-05 24.0 0.0 2.9e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Asn_synthase PF00733.21 gi|126180150|ref|YP_001048115.1| - 0.0001 22.1 0.1 0.00014 21.7 0.1 1.1 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|126180150|ref|YP_001048115.1| - 0.00015 20.6 0.0 0.0002 20.3 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|126180150|ref|YP_001048115.1| - 0.00045 19.4 0.0 0.00059 19.0 0.0 1.1 1 0 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.20 gi|126180150|ref|YP_001048115.1| - 0.00048 19.9 0.0 0.00078 19.2 0.0 1.3 1 0 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.19 gi|126180150|ref|YP_001048115.1| - 0.098 11.9 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase NUDIX PF00293.28 gi|126180151|ref|YP_001048116.1| - 2.8e-11 43.6 0.0 3.6e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain eRF1_2 PF03464.15 gi|126180152|ref|YP_001048117.1| - 1.3e-38 132.3 0.0 2.2e-38 131.6 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|126180152|ref|YP_001048117.1| - 9.6e-31 106.6 0.0 2.1e-30 105.5 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|126180152|ref|YP_001048117.1| - 1e-13 51.7 0.0 1.6e-13 51.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|126180152|ref|YP_001048117.1| - 1.5e-12 47.6 0.0 3.3e-12 46.5 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 1 acVLRF1 PF18859.1 gi|126180152|ref|YP_001048117.1| - 2.6e-11 43.9 0.0 8.6e-11 42.2 0.0 1.8 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor DUF915 PF06028.11 gi|126180152|ref|YP_001048117.1| - 0.2 10.9 0.0 0.34 10.2 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) DALR_1 PF05746.15 gi|126180153|ref|YP_001048118.1| - 2.3e-31 108.5 1.6 3.8e-31 107.7 0.7 2.0 2 0 0 2 2 2 1 DALR anticodon binding domain tRNA-synt_1d PF00750.19 gi|126180153|ref|YP_001048118.1| - 1.9e-29 102.7 0.0 2.6e-29 102.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) Arg_tRNA_synt_N PF03485.16 gi|126180153|ref|YP_001048118.1| - 8e-13 48.8 0.0 2.8e-12 47.0 0.0 2.0 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|126180153|ref|YP_001048118.1| - 3.4e-06 26.2 0.0 0.072 12.0 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|126180153|ref|YP_001048118.1| - 0.0078 15.0 0.0 0.12 11.1 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (M) Wyosine_form PF08608.12 gi|126180154|ref|YP_001048119.1| - 1.8e-22 79.5 0.1 3.6e-22 78.5 0.1 1.6 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|126180154|ref|YP_001048119.1| - 1.4e-17 64.6 0.6 2.4e-17 63.8 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily BTRD1 PF17660.1 gi|126180154|ref|YP_001048119.1| - 0.0012 18.6 0.1 0.053 13.3 0.1 3.1 3 0 0 3 3 3 1 Bacterial tandem repeat domain 1 tRNA-synt_2d PF01409.20 gi|126180155|ref|YP_001048120.1| - 1.6e-52 178.4 0.0 3.8e-49 167.4 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SepRS_C PF18006.1 gi|126180155|ref|YP_001048120.1| - 2.3e-15 56.4 0.1 5.4e-15 55.2 0.1 1.7 1 0 0 1 1 1 1 O-phosphoseryl-tRNA synthetase C-terminal domain tRNA_synthFbeta PF17759.1 gi|126180155|ref|YP_001048120.1| - 2.4e-11 43.5 0.0 3.6e-08 33.1 0.0 2.3 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2b PF00587.25 gi|126180155|ref|YP_001048120.1| - 0.0087 16.0 0.1 0.036 14.0 0.1 2.0 2 1 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Reovirus_Mu2 PF07781.11 gi|126180155|ref|YP_001048120.1| - 0.022 13.1 0.0 0.033 12.6 0.0 1.1 1 0 0 1 1 1 0 Reovirus minor core protein Mu-2 Glyco_transf_20 PF00982.21 gi|126180156|ref|YP_001048121.1| - 8.4e-167 555.6 0.0 1e-166 555.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 20 Trehalose_PPase PF02358.16 gi|126180156|ref|YP_001048121.1| - 4e-51 173.4 0.0 6e-51 172.8 0.0 1.2 1 0 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.12 gi|126180156|ref|YP_001048121.1| - 6.1e-08 32.7 0.0 0.00088 19.1 0.0 2.4 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Glycos_transf_1 PF00534.20 gi|126180156|ref|YP_001048121.1| - 1.7e-06 27.7 0.1 1.7e-05 24.4 0.1 2.1 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126180156|ref|YP_001048121.1| - 8.4e-05 23.0 0.0 0.00019 21.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|126180156|ref|YP_001048121.1| - 0.008 15.9 0.1 0.014 15.1 0.1 1.4 1 0 0 1 1 1 1 Starch synthase catalytic domain EcsB PF05975.12 gi|126180157|ref|YP_001048122.1| - 0.0012 17.8 4.7 0.0015 17.4 4.7 1.0 1 0 0 1 1 1 1 Bacterial ABC transporter protein EcsB Peptidase_U4 PF03419.13 gi|126180157|ref|YP_001048122.1| - 0.005 16.2 2.7 0.0059 15.9 2.7 1.1 1 0 0 1 1 1 1 Sporulation factor SpoIIGA TctB PF07331.11 gi|126180157|ref|YP_001048122.1| - 0.02 15.2 6.8 0.026 14.8 6.8 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Ac76 PF05814.11 gi|126180157|ref|YP_001048122.1| - 0.1 12.6 1.8 0.22 11.5 0.0 2.1 2 1 0 2 2 2 0 Orf76 (Ac76) UbiA PF01040.18 gi|126180157|ref|YP_001048122.1| - 0.18 11.1 10.3 0.28 10.5 10.3 1.4 1 1 0 1 1 1 0 UbiA prenyltransferase family DoxX_2 PF13564.6 gi|126180157|ref|YP_001048122.1| - 0.24 11.5 10.8 0.064 13.4 6.0 2.1 1 1 1 2 2 2 0 DoxX-like family HTH_3 PF01381.22 gi|126180158|ref|YP_001048123.1| - 1.6e-16 60.1 0.2 1.8e-16 59.9 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|126180158|ref|YP_001048123.1| - 3.1e-13 49.5 0.1 3.4e-13 49.4 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|126180158|ref|YP_001048123.1| - 9.4e-09 35.5 0.0 1.1e-08 35.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|126180158|ref|YP_001048123.1| - 4.2e-07 30.3 0.0 4.8e-07 30.1 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 gi|126180158|ref|YP_001048123.1| - 6e-05 22.8 0.1 8.3e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|126180158|ref|YP_001048123.1| - 0.0017 17.9 0.1 0.0024 17.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|126180158|ref|YP_001048123.1| - 0.0023 17.9 0.1 0.016 15.2 0.1 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_37 PF13744.6 gi|126180158|ref|YP_001048123.1| - 0.02 14.9 0.0 0.022 14.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|126180158|ref|YP_001048123.1| - 0.038 13.8 0.1 0.054 13.3 0.1 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|126180158|ref|YP_001048123.1| - 0.047 13.2 0.5 0.096 12.2 0.3 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 MerR PF00376.23 gi|126180158|ref|YP_001048123.1| - 0.062 13.1 0.1 0.36 10.6 0.1 2.0 1 1 0 1 1 1 0 MerR family regulatory protein HTH_11 PF08279.12 gi|126180158|ref|YP_001048123.1| - 0.065 13.2 0.2 0.095 12.7 0.2 1.2 1 0 0 1 1 1 0 HTH domain YdaS_antitoxin PF15943.5 gi|126180158|ref|YP_001048123.1| - 0.077 12.9 0.0 0.21 11.5 0.0 1.7 1 1 1 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_38 PF13936.6 gi|126180158|ref|YP_001048123.1| - 0.1 12.3 0.3 0.2 11.5 0.3 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain RNase_H_2 PF13482.6 gi|126180159|ref|YP_001048124.1| - 1e-32 113.4 0.0 1.4e-32 113.0 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|126180159|ref|YP_001048124.1| - 0.00035 20.3 0.0 0.00053 19.7 0.0 1.2 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_exo1 PF03104.19 gi|126180159|ref|YP_001048124.1| - 0.088 11.9 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase family B, exonuclease domain DNA_pol_lambd_f PF10391.9 gi|126180159|ref|YP_001048124.1| - 0.16 11.9 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda EutK_C PF16365.5 gi|126180160|ref|YP_001048125.1| - 0.018 15.1 0.6 0.041 13.9 0.4 1.7 2 0 0 2 2 2 0 Ethanolamine utilization protein EutK C-terminus Hydrolase_like PF13242.6 gi|126180161|ref|YP_001048126.1| - 6.4e-23 80.6 1.4 8.3e-22 77.0 0.1 2.2 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|126180161|ref|YP_001048126.1| - 3.3e-08 34.1 1.3 1.6e-06 28.5 0.4 2.3 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|126180161|ref|YP_001048126.1| - 1.5e-07 31.7 0.1 4.3e-07 30.2 0.0 1.7 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|126180161|ref|YP_001048126.1| - 0.0099 16.0 0.1 0.029 14.5 0.1 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Acetyltransf_6 PF13480.7 gi|126180161|ref|YP_001048126.1| - 0.024 14.8 0.2 0.075 13.2 0.1 2.0 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain PGP_phosphatase PF09419.10 gi|126180161|ref|YP_001048126.1| - 0.24 11.0 0.0 0.98 9.0 0.0 2.0 2 0 0 2 2 2 0 Mitochondrial PGP phosphatase CENP-Q PF13094.6 gi|126180162|ref|YP_001048127.1| - 0.00011 22.5 0.7 0.00017 21.8 0.7 1.2 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit AAA_13 PF13166.6 gi|126180162|ref|YP_001048127.1| - 0.03 13.0 0.0 0.04 12.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain DUF3829 PF12889.7 gi|126180162|ref|YP_001048127.1| - 0.03 13.8 0.1 0.045 13.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) CdvA PF18822.1 gi|126180162|ref|YP_001048127.1| - 0.057 13.3 0.1 0.1 12.5 0.1 1.4 1 0 0 1 1 1 0 CdvA-like coiled-coil domain SlyX PF04102.12 gi|126180162|ref|YP_001048127.1| - 0.12 13.0 0.4 0.24 12.0 0.4 1.5 1 0 0 1 1 1 0 SlyX OmpH PF03938.14 gi|126180162|ref|YP_001048127.1| - 0.17 12.2 0.0 0.29 11.5 0.0 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) ATG16 PF08614.11 gi|126180162|ref|YP_001048127.1| - 0.19 11.9 6.2 0.095 12.9 3.4 1.9 2 1 0 2 2 2 0 Autophagy protein 16 (ATG16) ABC_tran PF00005.27 gi|126180163|ref|YP_001048128.1| - 9.1e-22 78.1 0.0 1.6e-21 77.3 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|126180163|ref|YP_001048128.1| - 6.7e-08 32.7 0.2 0.00011 22.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|126180163|ref|YP_001048128.1| - 1.5e-05 24.7 0.2 3.2e-05 23.6 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|126180163|ref|YP_001048128.1| - 0.00013 21.5 0.1 0.0022 17.5 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|126180163|ref|YP_001048128.1| - 0.00053 19.6 0.0 0.00091 18.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|126180163|ref|YP_001048128.1| - 0.00073 20.1 0.6 0.0012 19.4 0.6 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|126180163|ref|YP_001048128.1| - 0.00096 19.1 0.1 0.0016 18.4 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|126180163|ref|YP_001048128.1| - 0.0021 17.8 0.9 0.0079 15.9 0.3 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.6 gi|126180163|ref|YP_001048128.1| - 0.013 15.1 0.0 0.025 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|126180163|ref|YP_001048128.1| - 0.029 14.7 0.1 0.052 13.9 0.1 1.4 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|126180163|ref|YP_001048128.1| - 0.036 14.0 0.1 0.079 12.9 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|126180163|ref|YP_001048128.1| - 0.048 13.8 0.0 0.073 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|126180163|ref|YP_001048128.1| - 0.071 13.5 0.4 0.15 12.5 0.4 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|126180163|ref|YP_001048128.1| - 0.079 13.1 0.1 0.1 12.7 0.1 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|126180163|ref|YP_001048128.1| - 0.095 13.3 0.2 0.43 11.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|126180163|ref|YP_001048128.1| - 0.095 12.4 0.4 0.22 11.3 0.1 1.6 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|126180163|ref|YP_001048128.1| - 0.14 11.2 0.0 0.28 10.2 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.6 gi|126180163|ref|YP_001048128.1| - 0.2 11.9 1.0 0.81 10.0 0.2 2.1 2 0 0 2 2 2 0 AAA domain UPF0051 PF01458.17 gi|126180164|ref|YP_001048129.1| - 1e-50 172.5 0.4 1.2e-50 172.2 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) PCMT PF01135.19 gi|126180165|ref|YP_001048130.1| - 5.2e-67 225.6 0.0 6.2e-67 225.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|126180165|ref|YP_001048130.1| - 1e-08 35.8 0.0 1.5e-08 35.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126180165|ref|YP_001048130.1| - 7.9e-08 32.2 0.0 9.1e-08 32.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|126180165|ref|YP_001048130.1| - 1.9e-07 30.4 0.0 2.5e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 gi|126180165|ref|YP_001048130.1| - 4.5e-06 27.2 0.0 9e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|126180165|ref|YP_001048130.1| - 0.00019 21.0 0.0 0.00029 20.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|126180165|ref|YP_001048130.1| - 0.00033 20.5 0.0 0.00038 20.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|126180165|ref|YP_001048130.1| - 0.00069 19.6 0.0 0.001 19.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|126180165|ref|YP_001048130.1| - 0.001 18.7 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F DUF938 PF06080.12 gi|126180165|ref|YP_001048130.1| - 0.0096 15.7 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_PK PF05891.12 gi|126180165|ref|YP_001048130.1| - 0.028 13.9 0.0 0.038 13.5 0.0 1.1 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase NodS PF05401.11 gi|126180165|ref|YP_001048130.1| - 0.051 13.2 0.0 0.077 12.6 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) PrmA PF06325.13 gi|126180165|ref|YP_001048130.1| - 0.091 12.1 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_3 PF01596.17 gi|126180165|ref|YP_001048130.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase GCD14 PF08704.10 gi|126180165|ref|YP_001048130.1| - 0.24 11.0 0.0 0.3 10.7 0.0 1.1 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Cyclase PF04199.13 gi|126180166|ref|YP_001048131.1| - 2.9e-20 72.9 0.0 3.9e-20 72.5 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase THF_DHG_CYH_C PF02882.19 gi|126180167|ref|YP_001048132.1| - 0.01 15.2 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain MCM PF00493.23 gi|126180167|ref|YP_001048132.1| - 0.11 11.5 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 MCM P-loop domain PGM_PMM_I PF02878.16 gi|126180168|ref|YP_001048133.1| - 2.7e-31 108.1 0.0 4.3e-31 107.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|126180168|ref|YP_001048133.1| - 3.5e-18 65.8 0.0 6.5e-18 65.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|126180168|ref|YP_001048133.1| - 4.8e-18 65.7 0.0 9.2e-18 64.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|126180168|ref|YP_001048133.1| - 1.7e-12 47.4 0.0 1.4e-11 44.4 0.1 2.3 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CinA_KH PF18146.1 gi|126180168|ref|YP_001048133.1| - 0.087 13.0 0.2 0.25 11.5 0.2 1.7 1 0 0 1 1 1 0 Damage-inducible protein CinA KH domain NTP_transferase PF00483.23 gi|126180169|ref|YP_001048134.1| - 6.2e-40 137.3 0.0 8.2e-40 136.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|126180169|ref|YP_001048134.1| - 4.3e-15 54.8 27.5 1.8e-08 33.8 3.0 5.0 3 2 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|126180169|ref|YP_001048134.1| - 3.2e-13 50.3 0.0 4.2e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|126180169|ref|YP_001048134.1| - 7.2e-07 28.8 3.2 7.2e-07 28.8 3.2 5.7 6 1 0 6 6 6 3 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|126180169|ref|YP_001048134.1| - 0.00064 18.0 4.0 0.0015 16.7 4.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4954) IspD PF01128.19 gi|126180169|ref|YP_001048134.1| - 0.0037 17.0 0.0 0.0056 16.4 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|126180169|ref|YP_001048134.1| - 0.19 11.6 0.0 0.31 10.9 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase NTP_transferase PF00483.23 gi|126180170|ref|YP_001048135.1| - 5.3e-36 124.4 0.0 6.5e-36 124.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|126180170|ref|YP_001048135.1| - 8.4e-21 72.9 14.5 3e-10 39.4 0.4 5.2 2 1 4 6 6 6 6 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|126180170|ref|YP_001048135.1| - 2.7e-19 70.1 0.0 3.6e-19 69.7 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|126180170|ref|YP_001048135.1| - 5.8e-08 32.4 0.3 5.8e-08 32.4 0.3 4.1 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|126180170|ref|YP_001048135.1| - 1.1e-07 31.8 0.2 1.7e-07 31.2 0.2 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DMP12 PF16779.5 gi|126180170|ref|YP_001048135.1| - 0.094 12.7 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 DNA-mimic protein CTP_transf_3 PF02348.19 gi|126180170|ref|YP_001048135.1| - 0.13 12.2 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase SIS PF01380.22 gi|126180171|ref|YP_001048136.1| - 5.1e-49 165.5 0.5 3.4e-25 88.4 0.1 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|126180171|ref|YP_001048136.1| - 1.7e-24 86.5 0.1 3.9e-24 85.4 0.1 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|126180171|ref|YP_001048136.1| - 2.1e-20 72.9 0.0 3.9e-20 72.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|126180171|ref|YP_001048136.1| - 0.096 12.7 0.1 0.3 11.1 0.1 1.9 1 0 0 1 1 1 0 SIS domain GATase_4 PF13230.6 gi|126180171|ref|YP_001048136.1| - 0.11 11.4 0.1 0.2 10.5 0.1 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II Hexapep PF00132.24 gi|126180172|ref|YP_001048137.1| - 1.5e-24 84.7 21.4 1.3e-09 37.3 3.4 4.9 3 1 3 6 6 6 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|126180172|ref|YP_001048137.1| - 9.1e-18 63.7 15.2 2.9e-08 33.3 3.0 4.8 5 0 0 5 5 5 4 Hexapeptide repeat of succinyl-transferase DegT_DnrJ_EryC1 PF01041.17 gi|126180173|ref|YP_001048138.1| - 2.4e-135 451.5 0.0 2.7e-135 451.3 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|126180173|ref|YP_001048138.1| - 1.7e-07 30.7 0.1 7.6e-07 28.6 0.0 1.9 2 1 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|126180173|ref|YP_001048138.1| - 3.2e-07 29.9 0.2 7.1e-07 28.8 0.2 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|126180173|ref|YP_001048138.1| - 0.00048 19.2 0.0 0.00069 18.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|126180173|ref|YP_001048138.1| - 0.0043 15.7 0.0 0.0056 15.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.20 gi|126180173|ref|YP_001048138.1| - 0.2 10.4 0.1 0.29 9.8 0.1 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Glyco_trans_1_4 PF13692.6 gi|126180174|ref|YP_001048139.1| - 8e-18 65.2 0.0 1.5e-17 64.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126180174|ref|YP_001048139.1| - 1.5e-16 60.9 3.8 2.4e-16 60.2 3.8 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|126180174|ref|YP_001048139.1| - 1.6e-13 51.4 1.2 3.3e-13 50.4 1.2 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|126180174|ref|YP_001048139.1| - 1.7e-12 47.2 0.0 2.7e-12 46.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|126180174|ref|YP_001048139.1| - 1.4e-06 28.6 0.0 4.2e-06 27.1 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|126180174|ref|YP_001048139.1| - 1.1e-05 25.5 0.1 2.9e-05 24.1 0.3 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like STT3 PF02516.14 gi|126180175|ref|YP_001048140.1| - 1.8e-20 73.3 34.2 2e-20 73.2 27.4 2.7 3 0 0 3 3 3 2 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|126180175|ref|YP_001048140.1| - 2.8e-11 43.5 1.2 5.7e-11 42.6 1.2 1.5 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain Peptidase_U4 PF03419.13 gi|126180175|ref|YP_001048140.1| - 0.2 10.9 31.6 0.4 9.9 11.1 2.5 2 0 0 2 2 2 0 Sporulation factor SpoIIGA Hist_deacetyl PF00850.19 gi|126180176|ref|YP_001048141.1| - 3.5e-73 246.8 0.0 7.5e-73 245.7 0.0 1.4 1 1 0 1 1 1 1 Histone deacetylase domain YcaO PF02624.16 gi|126180177|ref|YP_001048142.1| - 7.6e-86 288.3 1.3 1.1e-85 287.8 0.6 1.5 2 0 0 2 2 2 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding DUF2098 PF09871.9 gi|126180178|ref|YP_001048143.1| - 3.8e-27 94.5 2.1 4.3e-27 94.3 2.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) FliM PF02154.15 gi|126180178|ref|YP_001048143.1| - 0.012 15.5 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 Flagellar motor switch protein FliM Peptidase_C78 PF07910.13 gi|126180178|ref|YP_001048143.1| - 0.078 12.4 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase family C78 NikR_C PF08753.11 gi|126180179|ref|YP_001048144.1| - 4.7e-30 103.6 3.8 8.2e-30 102.8 3.8 1.4 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|126180179|ref|YP_001048144.1| - 1.8e-06 27.7 0.0 2.8e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Bromo_TP PF07524.13 gi|126180179|ref|YP_001048144.1| - 0.03 14.3 0.0 0.059 13.4 0.0 1.5 1 0 0 1 1 1 0 Bromodomain associated HicB_lk_antitox PF15919.5 gi|126180179|ref|YP_001048144.1| - 0.03 14.4 0.0 0.073 13.2 0.0 1.6 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system GTP_EFTU PF00009.27 gi|126180180|ref|YP_001048145.1| - 1.9e-30 105.9 1.2 8.8e-30 103.7 1.2 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|126180180|ref|YP_001048145.1| - 2.1e-30 104.8 0.7 5.9e-30 103.4 0.7 1.8 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|126180180|ref|YP_001048145.1| - 1.2e-07 32.0 2.7 1.5e-07 31.7 0.8 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|126180180|ref|YP_001048145.1| - 0.00017 21.7 0.0 0.00044 20.3 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|126180180|ref|YP_001048145.1| - 0.00033 20.6 0.6 0.014 15.3 0.1 2.3 2 0 0 2 2 2 1 RsgA GTPase zinc-ribbons_6 PF07191.12 gi|126180180|ref|YP_001048145.1| - 0.022 14.8 0.1 0.043 13.8 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbons PduV-EutP PF10662.9 gi|126180180|ref|YP_001048145.1| - 0.025 14.3 0.5 4.6 7.0 0.0 2.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 gi|126180180|ref|YP_001048145.1| - 0.025 14.1 0.6 2 7.9 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B cobW PF02492.19 gi|126180180|ref|YP_001048145.1| - 0.026 14.1 0.3 1.6 8.3 0.1 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1_Xtn PF16897.5 gi|126180180|ref|YP_001048145.1| - 0.081 13.0 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain DnaJ_CXXCXGXG PF00684.19 gi|126180180|ref|YP_001048145.1| - 0.13 12.7 0.7 0.31 11.4 0.7 1.6 1 0 0 1 1 1 0 DnaJ central domain TFIIS_C PF01096.18 gi|126180180|ref|YP_001048145.1| - 0.31 10.9 2.6 2 8.4 0.3 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) PIN_9 PF18477.1 gi|126180181|ref|YP_001048146.1| - 1.1e-30 106.4 0.0 1.3e-30 106.1 0.0 1.0 1 0 0 1 1 1 1 PIN like domain DUF5615 PF18480.1 gi|126180181|ref|YP_001048146.1| - 0.00038 20.1 0.1 0.00096 18.9 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF5615) RNase_Zc3h12a PF11977.8 gi|126180181|ref|YP_001048146.1| - 0.019 14.7 0.0 0.024 14.4 0.0 1.1 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain DUF188 PF02639.14 gi|126180181|ref|YP_001048146.1| - 0.02 14.5 0.0 0.026 14.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN PF01850.21 gi|126180181|ref|YP_001048146.1| - 0.072 13.6 0.0 0.49 10.9 0.0 1.9 1 1 0 1 1 1 0 PIN domain PIN_10 PF18478.1 gi|126180181|ref|YP_001048146.1| - 0.14 12.4 0.1 0.27 11.5 0.0 1.7 2 1 0 2 2 2 0 PIN like domain DUF4411 PF14367.6 gi|126180181|ref|YP_001048146.1| - 0.25 11.2 0.0 0.58 10.0 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4411) SHS2_Rpb7-N PF03876.17 gi|126180182|ref|YP_001048147.1| - 1.9e-19 69.8 0.0 3.4e-19 69.0 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|126180182|ref|YP_001048147.1| - 5.8e-12 45.8 0.0 1.2e-11 44.8 0.0 1.5 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|126180182|ref|YP_001048147.1| - 0.00059 20.1 0.1 0.0032 17.7 0.1 2.0 1 1 0 1 1 1 1 RNA polymerase III subunit Rpc25 Spt4 PF06093.13 gi|126180183|ref|YP_001048148.1| - 3.9e-13 49.3 0.4 4.9e-13 49.0 0.4 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger PHF5 PF03660.14 gi|126180183|ref|YP_001048148.1| - 0.001 19.2 0.5 0.001 19.2 0.5 1.1 1 0 0 1 1 1 1 PHF5-like protein RecR PF02132.15 gi|126180183|ref|YP_001048148.1| - 0.008 15.7 1.6 0.011 15.2 1.6 1.2 1 0 0 1 1 1 1 RecR protein CBM_35 PF16990.5 gi|126180183|ref|YP_001048148.1| - 0.14 12.4 0.0 0.15 12.3 0.0 1.1 1 0 0 1 1 1 0 Carbohydrate binding module (family 35) DUF359 PF04019.12 gi|126180184|ref|YP_001048149.1| - 2.6e-38 130.5 0.0 3.2e-38 130.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) DUF432 PF04254.13 gi|126180184|ref|YP_001048149.1| - 0.21 11.8 0.0 0.31 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF432) Ribosomal_S24e PF01282.19 gi|126180185|ref|YP_001048150.1| - 3.1e-21 75.1 0.0 3.9e-21 74.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|126180186|ref|YP_001048151.1| - 1.6e-16 60.2 6.2 2e-16 59.8 6.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a Nudix_N_2 PF14803.6 gi|126180186|ref|YP_001048151.1| - 0.0074 16.2 4.2 0.032 14.1 4.2 2.0 1 1 0 1 1 1 1 Nudix N-terminal MqsA_antitoxin PF15731.5 gi|126180186|ref|YP_001048151.1| - 0.0094 16.1 0.3 0.01 15.9 0.3 1.2 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA NOB1_Zn_bind PF08772.11 gi|126180186|ref|YP_001048151.1| - 0.012 15.7 2.7 0.13 12.4 0.1 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF1451 PF07295.11 gi|126180186|ref|YP_001048151.1| - 0.026 14.6 3.1 0.026 14.5 3.1 1.0 1 0 0 1 1 1 0 Zinc-ribbon containing domain RNA_POL_M_15KD PF02150.16 gi|126180186|ref|YP_001048151.1| - 0.06 13.2 1.5 0.17 11.8 1.5 1.7 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zinc_ribbon_13 PF09855.9 gi|126180186|ref|YP_001048151.1| - 0.11 12.6 3.8 0.13 12.5 0.4 2.1 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Ribosomal_L37e PF01907.19 gi|126180186|ref|YP_001048151.1| - 0.11 12.6 3.2 0.12 12.5 2.5 1.5 1 1 0 1 1 1 0 Ribosomal protein L37e zf-ribbon_3 PF13248.6 gi|126180186|ref|YP_001048151.1| - 0.22 11.0 7.9 5 6.7 7.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|126180186|ref|YP_001048151.1| - 2.3 8.3 9.3 12 5.9 8.9 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Peptidase_M22 PF00814.25 gi|126180187|ref|YP_001048152.1| - 1.8e-75 254.2 0.0 2.4e-75 253.7 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family RIO1 PF01163.22 gi|126180187|ref|YP_001048152.1| - 5.2e-09 36.0 0.0 8.9e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|126180187|ref|YP_001048152.1| - 2.6e-08 34.1 1.2 0.00017 21.6 0.0 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|126180187|ref|YP_001048152.1| - 4.2e-05 23.1 0.0 6.8e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|126180187|ref|YP_001048152.1| - 9.2e-05 21.9 0.0 0.0013 18.1 0.0 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.17 gi|126180187|ref|YP_001048152.1| - 0.0016 17.8 0.0 0.0019 17.6 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase EcKinase PF02958.20 gi|126180187|ref|YP_001048152.1| - 0.028 13.8 0.0 0.044 13.1 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase Pkinase_fungal PF17667.1 gi|126180187|ref|YP_001048152.1| - 0.12 11.1 0.0 0.17 10.6 0.0 1.1 1 0 0 1 1 1 0 Fungal protein kinase Choline_kinase PF01633.20 gi|126180187|ref|YP_001048152.1| - 0.26 10.8 0.0 0.39 10.3 0.0 1.2 1 0 0 1 1 1 0 Choline/ethanolamine kinase Ham1p_like PF01725.16 gi|126180188|ref|YP_001048153.1| - 9.7e-49 165.8 0.0 1.1e-48 165.6 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Ribosomal_L40e PF01020.17 gi|126180189|ref|YP_001048154.1| - 3.4e-06 26.8 4.6 3.9e-06 26.7 4.6 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|126180189|ref|YP_001048154.1| - 0.001 18.7 1.0 0.0015 18.1 1.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|126180189|ref|YP_001048154.1| - 0.002 18.1 0.6 0.002 18.1 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|126180189|ref|YP_001048154.1| - 0.0024 17.2 1.9 0.0029 16.9 1.9 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|126180189|ref|YP_001048154.1| - 0.099 12.3 5.6 0.17 11.6 5.5 1.5 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF1917 PF08939.10 gi|126180190|ref|YP_001048155.1| - 2.7e-23 83.2 0.4 3.9e-23 82.7 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1917) DUF3349 PF11829.8 gi|126180190|ref|YP_001048155.1| - 0.15 12.9 0.0 0.26 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3349) Thi4 PF01946.17 gi|126180191|ref|YP_001048156.1| - 6.2e-74 248.2 1.7 7.2e-74 248.0 1.7 1.0 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|126180191|ref|YP_001048156.1| - 4.4e-08 33.2 0.5 1.1e-07 31.9 0.5 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|126180191|ref|YP_001048156.1| - 6.8e-08 32.5 6.1 0.0016 18.1 0.1 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|126180191|ref|YP_001048156.1| - 1.7e-06 27.6 0.2 1.9e-06 27.4 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|126180191|ref|YP_001048156.1| - 9e-06 25.3 3.0 1.2e-05 24.9 3.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|126180191|ref|YP_001048156.1| - 2.9e-05 23.0 3.8 0.00031 19.6 4.2 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|126180191|ref|YP_001048156.1| - 0.00011 21.5 10.0 0.00021 20.5 3.7 2.9 1 1 1 3 3 3 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|126180191|ref|YP_001048156.1| - 0.00012 21.4 0.3 0.00017 20.9 0.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|126180191|ref|YP_001048156.1| - 0.015 14.6 3.7 0.023 13.9 3.7 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|126180191|ref|YP_001048156.1| - 0.029 14.9 0.9 0.13 12.9 0.4 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|126180191|ref|YP_001048156.1| - 0.032 13.3 1.4 0.045 12.8 1.4 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A K_oxygenase PF13434.6 gi|126180191|ref|YP_001048156.1| - 0.046 12.8 0.0 0.07 12.3 0.0 1.1 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|126180191|ref|YP_001048156.1| - 0.19 10.7 0.8 0.39 9.7 0.8 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein Peptidase_M48 PF01435.18 gi|126180192|ref|YP_001048157.1| - 5.8e-44 150.2 0.0 9.8e-44 149.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|126180192|ref|YP_001048157.1| - 4.8e-09 35.8 0.1 4.9e-08 32.5 0.0 2.0 2 0 0 2 2 2 1 BlaR1 peptidase M56 Peptidase_U49 PF10463.9 gi|126180192|ref|YP_001048157.1| - 0.002 17.9 0.0 0.11 12.2 0.0 2.2 2 0 0 2 2 2 1 Peptidase U49 SprT-like PF10263.9 gi|126180192|ref|YP_001048157.1| - 0.024 14.5 0.0 0.037 13.9 0.0 1.3 1 0 0 1 1 1 0 SprT-like family DUF2268 PF10026.9 gi|126180192|ref|YP_001048157.1| - 0.18 11.3 0.0 0.26 10.8 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Pex24p PF06398.11 gi|126180192|ref|YP_001048157.1| - 0.32 9.9 2.1 0.6 9.0 2.1 1.6 1 1 0 1 1 1 0 Integral peroxisomal membrane peroxin Ctr PF04145.15 gi|126180192|ref|YP_001048157.1| - 1.4 9.5 5.8 19 5.8 4.8 2.7 2 1 0 2 2 2 0 Ctr copper transporter family DUF2207 PF09972.9 gi|126180192|ref|YP_001048157.1| - 1.6 7.4 6.8 2 7.1 0.3 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Transglut_core PF01841.19 gi|126180193|ref|YP_001048158.1| - 0.0066 16.9 0.1 0.063 13.7 0.0 2.2 1 1 1 2 2 2 1 Transglutaminase-like superfamily MSP1_C PF07462.11 gi|126180193|ref|YP_001048158.1| - 0.12 11.1 2.3 0.074 11.7 0.3 1.5 2 0 0 2 2 2 0 Merozoite surface protein 1 (MSP1) C-terminus Pox_A9 PF04835.12 gi|126180193|ref|YP_001048158.1| - 0.23 11.6 0.5 0.43 10.8 0.5 1.3 1 0 0 1 1 1 0 A9 protein conserved region SKI PF01202.22 gi|126180195|ref|YP_001048160.1| - 7.4e-37 126.9 0.0 8.5e-37 126.7 0.0 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_18 PF13238.6 gi|126180195|ref|YP_001048160.1| - 1.4e-07 32.1 0.0 2.6e-07 31.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|126180195|ref|YP_001048160.1| - 3.7e-07 30.4 0.0 1.1e-06 28.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|126180195|ref|YP_001048160.1| - 7.8e-05 22.5 0.0 0.00012 21.9 0.0 1.5 1 1 0 1 1 1 1 Cytidylate kinase AAA_17 PF13207.6 gi|126180195|ref|YP_001048160.1| - 8.4e-05 23.0 0.1 0.00027 21.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|126180195|ref|YP_001048160.1| - 0.001 19.0 0.0 1.4 8.7 0.0 2.2 2 0 0 2 2 2 2 Deoxynucleoside kinase Cytidylate_kin2 PF13189.6 gi|126180195|ref|YP_001048160.1| - 0.0014 18.8 0.0 0.0037 17.4 0.0 1.7 1 1 1 2 2 2 1 Cytidylate kinase-like family RuvB_N PF05496.12 gi|126180195|ref|YP_001048160.1| - 0.0027 17.5 0.0 0.0039 16.9 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|126180195|ref|YP_001048160.1| - 0.0048 16.7 0.0 0.0066 16.2 0.0 1.2 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.29 gi|126180195|ref|YP_001048160.1| - 0.0079 16.6 0.2 0.0096 16.4 0.2 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|126180195|ref|YP_001048160.1| - 0.018 15.0 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain Ploopntkinase3 PF18751.1 gi|126180195|ref|YP_001048160.1| - 0.032 14.2 0.0 0.05 13.5 0.0 1.3 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 ADK PF00406.22 gi|126180195|ref|YP_001048160.1| - 0.036 14.2 0.0 0.14 12.3 0.0 1.9 2 0 0 2 2 2 0 Adenylate kinase APS_kinase PF01583.20 gi|126180195|ref|YP_001048160.1| - 0.093 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_28 PF13521.6 gi|126180195|ref|YP_001048160.1| - 0.12 12.6 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|126180195|ref|YP_001048160.1| - 0.12 12.6 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Ras PF00071.22 gi|126180195|ref|YP_001048160.1| - 0.13 11.9 0.4 0.59 9.7 0.4 1.9 1 1 0 1 1 1 0 Ras family Hydin_ADK PF17213.3 gi|126180195|ref|YP_001048160.1| - 0.14 12.4 0.0 0.22 11.8 0.0 1.2 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain AAA_29 PF13555.6 gi|126180195|ref|YP_001048160.1| - 0.19 11.5 0.1 0.57 10.0 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain 6PF2K PF01591.18 gi|126180195|ref|YP_001048160.1| - 0.22 10.8 0.0 0.28 10.5 0.0 1.2 1 0 0 1 1 1 0 6-phosphofructo-2-kinase Cation_efflux PF01545.21 gi|126180197|ref|YP_001048162.1| - 4.4e-38 131.0 10.6 5.9e-38 130.6 10.6 1.2 1 0 0 1 1 1 1 Cation efflux family Nitro_FeMo-Co PF02579.17 gi|126180197|ref|YP_001048162.1| - 3.1e-18 65.9 0.2 5.7e-18 65.0 0.2 1.5 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor ZT_dimer PF16916.5 gi|126180197|ref|YP_001048162.1| - 4.3e-16 58.8 0.2 8.7e-16 57.8 0.2 1.5 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Methyltransf_25 PF13649.6 gi|126180199|ref|YP_001048164.1| - 5.9e-22 78.2 0.1 8.4e-22 77.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126180199|ref|YP_001048164.1| - 3.4e-17 62.6 0.0 4.5e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126180199|ref|YP_001048164.1| - 1.3e-15 57.8 0.0 2.4e-15 56.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126180199|ref|YP_001048164.1| - 4.1e-14 53.1 0.0 5.5e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.11 gi|126180199|ref|YP_001048164.1| - 7.6e-13 48.6 0.0 1.5e-12 47.6 0.0 1.4 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_23 PF13489.6 gi|126180199|ref|YP_001048164.1| - 9e-13 48.4 0.0 1e-12 48.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|126180199|ref|YP_001048164.1| - 1.4e-08 34.4 0.0 1.9e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|126180199|ref|YP_001048164.1| - 4.7e-08 32.7 0.0 5.8e-08 32.4 0.0 1.0 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|126180199|ref|YP_001048164.1| - 1.7e-07 31.0 0.0 2.2e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|126180199|ref|YP_001048164.1| - 4.9e-06 26.0 0.0 5.9e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|126180199|ref|YP_001048164.1| - 0.00016 21.2 0.0 0.00021 20.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.11 gi|126180199|ref|YP_001048164.1| - 0.00017 21.3 0.0 0.00021 21.0 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_9 PF08003.11 gi|126180199|ref|YP_001048164.1| - 0.00023 20.2 0.0 0.00027 20.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) DUF938 PF06080.12 gi|126180199|ref|YP_001048164.1| - 0.004 16.9 0.0 0.014 15.2 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_20 PF12147.8 gi|126180199|ref|YP_001048164.1| - 0.0049 16.1 0.0 0.0065 15.7 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_4 PF02390.17 gi|126180199|ref|YP_001048164.1| - 0.0093 15.4 0.0 0.018 14.5 0.0 1.5 1 1 0 1 1 1 1 Putative methyltransferase AdoMet_MTase PF07757.13 gi|126180199|ref|YP_001048164.1| - 0.016 15.5 0.0 0.023 15.0 0.0 1.2 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Methyltransf_32 PF13679.6 gi|126180199|ref|YP_001048164.1| - 0.029 14.3 0.0 0.037 14.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|126180199|ref|YP_001048164.1| - 0.037 14.0 0.0 0.053 13.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Pox_MCEL PF03291.16 gi|126180199|ref|YP_001048164.1| - 0.07 12.2 0.0 0.098 11.7 0.0 1.2 1 0 0 1 1 1 0 mRNA capping enzyme Methyltransf_15 PF09445.10 gi|126180199|ref|YP_001048164.1| - 0.25 10.9 0.0 0.34 10.5 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase FMN_red PF03358.15 gi|126180200|ref|YP_001048165.1| - 1.4e-25 89.9 0.0 2.2e-25 89.2 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|126180200|ref|YP_001048165.1| - 1.7e-11 44.2 0.0 3.1e-11 43.4 0.0 1.5 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|126180200|ref|YP_001048165.1| - 0.046 14.0 0.0 0.59 10.4 0.0 2.2 2 0 0 2 2 2 0 Flavodoxin domain zf-AN1 PF01428.16 gi|126180201|ref|YP_001048166.1| - 6.6e-14 51.8 12.6 4.7e-10 39.5 3.5 2.5 1 1 1 2 2 2 2 AN1-like Zinc finger DUF553 PF04473.12 gi|126180201|ref|YP_001048166.1| - 0.00045 19.8 0.0 0.00082 18.9 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like domain FYVE PF01363.21 gi|126180201|ref|YP_001048166.1| - 0.033 14.3 2.7 0.08 13.1 2.7 1.7 1 1 0 1 1 1 0 FYVE zinc finger DUF2180 PF09947.9 gi|126180201|ref|YP_001048166.1| - 1.4 8.9 6.0 4.4 7.3 3.5 2.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) zf-C2HC_2 PF13913.6 gi|126180201|ref|YP_001048166.1| - 4.5 7.3 5.9 5.2 7.1 0.2 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type 2_5_RNA_ligase2 PF13563.6 gi|126180202|ref|YP_001048167.1| - 2.5e-18 66.5 0.1 3.4e-18 66.0 0.1 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|126180202|ref|YP_001048167.1| - 6.7e-06 26.2 0.1 0.0012 19.0 0.1 2.4 2 0 0 2 2 2 2 LigT like Phosphoesterase Imm5 PF14423.6 gi|126180203|ref|YP_001048168.1| - 0.19 11.9 0.0 0.53 10.5 0.0 1.7 2 0 0 2 2 2 0 Immunity protein Imm5 Fic_N PF13784.6 gi|126180204|ref|YP_001048169.1| - 2.2e-27 94.9 0.0 3.7e-27 94.2 0.0 1.4 1 0 0 1 1 1 1 Fic/DOC family N-terminal Fic PF02661.18 gi|126180204|ref|YP_001048169.1| - 6.9e-23 81.4 0.0 3.6e-22 79.1 0.0 2.2 2 0 0 2 2 2 1 Fic/DOC family HTH_13 PF11972.8 gi|126180204|ref|YP_001048169.1| - 4.9e-09 36.1 0.0 1.8e-08 34.3 0.0 1.9 2 0 0 2 2 2 1 HTH DNA binding domain MarR_2 PF12802.7 gi|126180204|ref|YP_001048169.1| - 8.3e-06 25.6 0.0 2.6e-05 24.0 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|126180204|ref|YP_001048169.1| - 0.00073 19.0 0.0 0.0017 17.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|126180204|ref|YP_001048169.1| - 0.0014 18.6 0.0 0.0026 17.7 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|126180204|ref|YP_001048169.1| - 0.022 14.6 0.0 0.082 12.8 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Vir_act_alpha_C PF10400.9 gi|126180204|ref|YP_001048169.1| - 3.6 8.3 5.3 0.79 10.4 0.7 2.3 3 1 0 3 3 3 0 Virulence activator alpha C-term Acetyltransf_1 PF00583.25 gi|126180205|ref|YP_001048170.1| - 9e-08 32.4 0.0 1.3e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|126180205|ref|YP_001048170.1| - 7.1e-07 29.6 0.0 1.2e-06 28.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|126180205|ref|YP_001048170.1| - 1.7e-06 28.0 0.0 2.1e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|126180205|ref|YP_001048170.1| - 9.7e-06 26.3 0.0 1.3e-05 25.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_18 PF18014.1 gi|126180205|ref|YP_001048170.1| - 0.00039 20.3 0.0 0.15 11.9 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|126180205|ref|YP_001048170.1| - 0.0025 17.7 0.0 0.0036 17.2 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein MmoB_DmpM PF02406.17 gi|126180205|ref|YP_001048170.1| - 0.1 12.8 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 MmoB/DmpM family Isochorismatase PF00857.20 gi|126180206|ref|YP_001048171.1| - 4.7e-37 127.9 0.0 5.5e-37 127.6 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family DUF5060 PF16586.5 gi|126180206|ref|YP_001048171.1| - 0.092 13.1 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5060) ACT_6 PF13740.6 gi|126180208|ref|YP_001048173.1| - 2e-11 43.7 0.0 2.5e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|126180208|ref|YP_001048173.1| - 8.7e-09 35.0 0.0 1.1e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|126180208|ref|YP_001048173.1| - 0.00027 20.7 0.3 0.0004 20.1 0.3 1.3 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|126180208|ref|YP_001048173.1| - 0.0013 19.3 0.4 0.002 18.7 0.4 1.2 1 0 0 1 1 1 1 ACT domain SwrA PF17423.2 gi|126180208|ref|YP_001048173.1| - 0.02 14.9 0.1 0.034 14.1 0.1 1.4 1 1 0 1 1 1 0 Swarming motility protein DUF711 PF05167.12 gi|126180209|ref|YP_001048174.1| - 4.8e-183 608.7 5.5 6e-183 608.4 5.5 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) Acetyltransf_18 PF18014.1 gi|126180210|ref|YP_001048175.1| - 1.7e-29 102.1 0.0 3.7e-29 101.1 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|126180210|ref|YP_001048175.1| - 9.4e-08 32.3 0.0 1.1e-06 28.8 0.1 2.4 3 0 0 3 3 3 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|126180210|ref|YP_001048175.1| - 3.9e-05 24.0 0.3 9.6e-05 22.7 0.3 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|126180210|ref|YP_001048175.1| - 0.018 15.0 0.0 0.047 13.6 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|126180210|ref|YP_001048175.1| - 0.18 12.5 0.0 0.33 11.6 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Glyoxalase_2 PF12681.7 gi|126180211|ref|YP_001048176.1| - 8.5e-09 35.4 0.0 1.2e-08 34.9 0.0 1.2 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|126180211|ref|YP_001048176.1| - 0.00022 21.4 0.5 0.00098 19.3 0.5 1.8 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FMN_red PF03358.15 gi|126180212|ref|YP_001048177.1| - 5.3e-24 84.7 0.0 6.4e-24 84.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|126180212|ref|YP_001048177.1| - 1e-13 51.5 0.0 1.7e-13 50.7 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|126180212|ref|YP_001048177.1| - 0.046 14.0 0.0 0.08 13.2 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin domain Cupin_2 PF07883.11 gi|126180213|ref|YP_001048178.1| - 1.1e-09 37.9 2.2 2e-09 37.0 0.9 1.9 2 0 0 2 2 2 1 Cupin domain Cupin_3 PF05899.12 gi|126180213|ref|YP_001048178.1| - 8.5e-07 28.6 0.5 1.6e-06 27.7 0.5 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|126180213|ref|YP_001048178.1| - 9.1e-07 28.9 0.1 1.2e-06 28.4 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain ARD PF03079.14 gi|126180213|ref|YP_001048178.1| - 0.00043 20.5 0.2 0.00059 20.1 0.2 1.2 1 0 0 1 1 1 1 ARD/ARD' family AraC_binding_2 PF14525.6 gi|126180213|ref|YP_001048178.1| - 0.0013 18.4 0.0 0.0015 18.3 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_1 PF00190.22 gi|126180213|ref|YP_001048178.1| - 0.0015 18.1 0.2 0.0019 17.8 0.2 1.2 1 0 0 1 1 1 1 Cupin Cupin_6 PF12852.7 gi|126180213|ref|YP_001048178.1| - 0.012 15.3 0.0 0.014 15.1 0.0 1.1 1 0 0 1 1 1 0 Cupin EutQ PF06249.12 gi|126180213|ref|YP_001048178.1| - 0.016 15.0 0.0 0.022 14.5 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ CENP-C_C PF11699.8 gi|126180213|ref|YP_001048178.1| - 0.12 12.7 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like DUF1722 PF08349.11 gi|126180214|ref|YP_001048179.1| - 1.1e-35 122.4 0.0 1.7e-35 121.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) DUF523 PF04463.12 gi|126180214|ref|YP_001048179.1| - 2.6e-30 105.3 0.0 3.8e-30 104.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF523) Methyltransf_25 PF13649.6 gi|126180215|ref|YP_001048180.1| - 1.9e-11 44.5 0.0 3.7e-11 43.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126180215|ref|YP_001048180.1| - 8.8e-08 32.8 0.0 2.2e-07 31.6 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126180215|ref|YP_001048180.1| - 2.2e-07 31.4 0.0 4.8e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126180215|ref|YP_001048180.1| - 8.5e-07 28.9 0.0 1.2e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|126180215|ref|YP_001048180.1| - 2.2e-06 27.0 0.0 3e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|126180215|ref|YP_001048180.1| - 1.8e-05 24.6 0.0 3.1e-05 23.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|126180215|ref|YP_001048180.1| - 3.5e-05 23.6 0.0 9e-05 22.3 0.0 1.6 1 1 1 2 2 2 1 Met-10+ like-protein MTS PF05175.14 gi|126180215|ref|YP_001048180.1| - 6.2e-05 22.6 0.0 9.5e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|126180215|ref|YP_001048180.1| - 0.00022 20.7 0.0 0.00033 20.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|126180215|ref|YP_001048180.1| - 0.0013 18.1 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|126180215|ref|YP_001048180.1| - 0.0051 16.2 0.0 0.0073 15.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB GidB PF02527.15 gi|126180215|ref|YP_001048180.1| - 0.0066 15.8 0.0 0.01 15.1 0.0 1.4 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Cons_hypoth95 PF03602.15 gi|126180215|ref|YP_001048180.1| - 0.026 14.2 0.0 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|126180215|ref|YP_001048180.1| - 0.042 13.2 0.0 0.058 12.7 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|126180215|ref|YP_001048180.1| - 0.056 13.4 0.0 0.077 13.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DREV PF05219.12 gi|126180215|ref|YP_001048180.1| - 0.057 12.5 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_16 PF10294.9 gi|126180215|ref|YP_001048180.1| - 0.059 13.1 0.0 0.087 12.6 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_PK PF05891.12 gi|126180215|ref|YP_001048180.1| - 0.096 12.2 0.0 0.74 9.3 0.0 2.0 2 0 0 2 2 2 0 AdoMet dependent proline di-methyltransferase PCMT PF01135.19 gi|126180215|ref|YP_001048180.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PBP_like_2 PF12849.7 gi|126180216|ref|YP_001048181.1| - 1.3e-46 159.5 0.6 4.1e-46 157.9 0.6 1.7 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|126180216|ref|YP_001048181.1| - 1.6e-18 66.5 0.1 2.5e-18 65.9 0.1 1.3 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|126180216|ref|YP_001048181.1| - 0.00038 20.3 0.0 0.0081 15.9 0.0 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|126180216|ref|YP_001048181.1| - 0.0092 15.4 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|126180216|ref|YP_001048181.1| - 0.016 14.6 0.0 0.027 13.8 0.0 1.3 1 0 0 1 1 1 0 LysR substrate binding domain BPD_transp_1 PF00528.22 gi|126180217|ref|YP_001048182.1| - 6.7e-46 156.4 39.1 1.7e-24 86.6 12.5 4.0 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|126180218|ref|YP_001048183.1| - 6.3e-30 104.5 0.0 9.4e-30 103.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126180218|ref|YP_001048183.1| - 2.9e-11 43.7 0.0 3.2e-05 23.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126180218|ref|YP_001048183.1| - 8.7e-07 28.6 0.0 0.0002 20.9 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|126180218|ref|YP_001048183.1| - 2.2e-06 27.6 0.1 7.8e-06 25.8 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|126180218|ref|YP_001048183.1| - 3.7e-06 27.4 0.0 1.3e-05 25.7 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|126180218|ref|YP_001048183.1| - 0.00044 19.9 0.0 0.00083 19.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|126180218|ref|YP_001048183.1| - 0.00062 19.7 0.0 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|126180218|ref|YP_001048183.1| - 0.00068 19.9 0.0 0.0011 19.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|126180218|ref|YP_001048183.1| - 0.001 19.6 0.0 0.0015 19.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|126180218|ref|YP_001048183.1| - 0.0069 16.0 0.1 0.028 14.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|126180218|ref|YP_001048183.1| - 0.019 14.9 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|126180218|ref|YP_001048183.1| - 0.1 12.3 0.0 0.32 10.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|126180218|ref|YP_001048183.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|126180218|ref|YP_001048183.1| - 0.16 11.7 0.0 0.35 10.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|126180218|ref|YP_001048183.1| - 0.16 12.0 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|126180218|ref|YP_001048183.1| - 0.17 11.8 0.0 0.61 9.9 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|126180218|ref|YP_001048183.1| - 0.17 12.0 0.0 0.39 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain PhoU PF01895.19 gi|126180219|ref|YP_001048184.1| - 1.7e-36 124.5 4.3 1.4e-17 63.9 0.0 2.1 2 0 0 2 2 2 2 PhoU domain Endostatin PF06482.11 gi|126180219|ref|YP_001048184.1| - 0.073 12.5 0.0 0.096 12.1 0.0 1.1 1 0 0 1 1 1 0 Collagenase NC10 and Endostatin Acetyltransf_3 PF13302.7 gi|126180220|ref|YP_001048185.1| - 1.3e-26 93.9 0.0 1.6e-26 93.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|126180220|ref|YP_001048185.1| - 1.4e-11 44.6 0.0 1.9e-11 44.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|126180220|ref|YP_001048185.1| - 4e-11 43.3 0.0 4.6e-11 43.1 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|126180220|ref|YP_001048185.1| - 0.0015 18.2 0.0 0.0055 16.4 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain RNB PF00773.19 gi|126180221|ref|YP_001048186.1| - 9.6e-65 219.0 0.0 1.3e-64 218.7 0.0 1.1 1 0 0 1 1 1 1 RNB domain RNase_II_C_S1 PF18614.1 gi|126180221|ref|YP_001048186.1| - 2.8e-16 59.2 0.4 2.8e-16 59.2 0.4 2.6 3 0 0 3 3 3 1 RNase II-type exonuclease C-terminal S1 domain S1 PF00575.23 gi|126180221|ref|YP_001048186.1| - 0.13 12.6 0.1 4.5 7.7 0.1 2.9 2 1 0 2 2 2 0 S1 RNA binding domain IBV_3C PF03620.13 gi|126180222|ref|YP_001048187.1| - 0.12 12.9 2.7 0.65 10.5 0.7 2.0 1 1 1 2 2 2 0 IBV 3C protein DUF373 PF04123.13 gi|126180222|ref|YP_001048187.1| - 2.3 7.6 10.2 2.9 7.2 10.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF373) YtpI PF14007.6 gi|126180222|ref|YP_001048187.1| - 9.5 6.4 18.6 0.32 11.2 8.3 2.5 1 1 1 2 2 2 0 YtpI-like protein MS_channel PF00924.18 gi|126180224|ref|YP_001048189.1| - 2.7e-51 174.0 0.8 3.9e-51 173.5 0.8 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|126180224|ref|YP_001048189.1| - 5e-05 23.2 3.5 5e-05 23.2 3.5 3.1 3 0 0 3 3 3 1 Conserved TM helix Bac_export_2 PF01312.19 gi|126180224|ref|YP_001048189.1| - 9.3 5.4 7.6 14 4.8 7.6 1.3 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family LUD_dom PF02589.15 gi|126180225|ref|YP_001048190.1| - 1.6e-38 132.3 0.0 2e-38 132.0 0.0 1.1 1 0 0 1 1 1 1 LUD domain sCache_2 PF17200.4 gi|126180226|ref|YP_001048191.1| - 8.4e-35 119.9 0.5 5.7e-18 65.3 0.0 2.3 2 1 0 2 2 2 2 Single Cache domain 2 dCache_2 PF08269.11 gi|126180226|ref|YP_001048191.1| - 2.4e-24 86.0 0.0 6.2e-14 51.9 0.0 2.1 2 0 0 2 2 2 2 Cache domain sCache_3_2 PF17203.4 gi|126180226|ref|YP_001048191.1| - 4e-06 27.0 0.0 0.091 12.9 0.0 2.3 2 0 0 2 2 2 2 Single cache domain 3 Cache_3-Cache_2 PF17201.4 gi|126180226|ref|YP_001048191.1| - 0.0069 15.7 0.0 0.087 12.1 0.0 2.0 2 0 0 2 2 2 1 Cache 3/Cache 2 fusion domain dCache_1 PF02743.18 gi|126180226|ref|YP_001048191.1| - 0.0096 15.7 0.0 4.2 7.1 0.0 2.2 2 0 0 2 2 2 2 Cache domain DUF4106 PF13388.6 gi|126180226|ref|YP_001048191.1| - 0.14 11.4 0.9 0.22 10.7 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4106) NUMOD1 PF07453.13 gi|126180226|ref|YP_001048191.1| - 0.27 11.6 0.7 6.3 7.2 0.1 2.3 2 0 0 2 2 2 0 NUMOD1 domain Gln-synt_C PF00120.24 gi|126180228|ref|YP_001048193.1| - 1.2e-51 175.7 0.0 4.3e-51 173.9 0.0 1.7 1 1 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|126180228|ref|YP_001048193.1| - 4.2e-12 45.6 0.0 9.3e-12 44.5 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Peptidase_M28 PF04389.17 gi|126180229|ref|YP_001048194.1| - 1.9e-35 122.4 0.3 2.6e-35 121.9 0.3 1.2 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M20 PF01546.28 gi|126180229|ref|YP_001048194.1| - 5e-07 29.6 0.0 9.8e-07 28.7 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 gi|126180229|ref|YP_001048194.1| - 1.3e-05 24.4 0.0 2.8e-05 23.3 0.0 1.6 1 1 1 2 2 2 1 M42 glutamyl aminopeptidase Nicastrin PF05450.15 gi|126180229|ref|YP_001048194.1| - 0.0026 17.3 0.0 0.0044 16.5 0.0 1.3 1 0 0 1 1 1 1 Nicastrin DUF61 PF01886.16 gi|126180230|ref|YP_001048195.1| - 7.5e-36 123.0 0.0 8.4e-36 122.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 DUF3772 PF12607.8 gi|126180230|ref|YP_001048195.1| - 0.12 12.1 1.5 0.14 11.9 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3772) Cast PF10174.9 gi|126180232|ref|YP_001048197.1| - 0.00038 18.8 4.9 0.00053 18.4 4.9 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone MerR_1 PF13411.6 gi|126180232|ref|YP_001048197.1| - 0.0016 18.5 0.0 0.0041 17.2 0.0 1.7 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_17 PF12728.7 gi|126180232|ref|YP_001048197.1| - 0.0066 16.6 0.0 0.021 15.0 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain Tmemb_cc2 PF10267.9 gi|126180232|ref|YP_001048197.1| - 0.093 11.9 2.3 0.11 11.6 2.3 1.1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein Sigma70_r4_2 PF08281.12 gi|126180232|ref|YP_001048197.1| - 0.11 12.1 2.6 4.8 7.0 0.0 3.4 3 0 0 3 3 3 0 Sigma-70, region 4 DLP_helical PF18709.1 gi|126180232|ref|YP_001048197.1| - 0.12 11.6 3.4 0.16 11.1 3.4 1.1 1 0 0 1 1 1 0 Dynamin-like helical domain HTH_29 PF13551.6 gi|126180232|ref|YP_001048197.1| - 0.13 12.3 2.2 0.75 9.9 0.0 3.1 4 0 0 4 4 4 0 Winged helix-turn helix DUF1664 PF07889.12 gi|126180232|ref|YP_001048197.1| - 0.15 12.1 1.1 0.25 11.4 1.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) MIF4G_like_2 PF09090.11 gi|126180232|ref|YP_001048197.1| - 0.24 10.8 1.7 0.36 10.3 1.7 1.2 1 0 0 1 1 1 0 MIF4G like SlyX PF04102.12 gi|126180232|ref|YP_001048197.1| - 1.8 9.2 7.9 11 6.7 0.8 2.7 1 1 1 2 2 2 0 SlyX Med21 PF11221.8 gi|126180232|ref|YP_001048197.1| - 2.6 8.3 7.8 7.9 6.7 7.8 1.9 1 1 0 1 1 1 0 Subunit 21 of Mediator complex DUF45 PF01863.17 gi|126180233|ref|YP_001048198.1| - 1.7e-41 142.5 0.0 3.6e-41 141.5 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function DUF45 DUF4360 PF14273.6 gi|126180233|ref|YP_001048198.1| - 0.084 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4360) PAS_9 PF13426.7 gi|126180234|ref|YP_001048199.1| - 8.6e-18 64.5 0.0 2.1e-10 40.8 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|126180234|ref|YP_001048199.1| - 2e-14 53.7 0.5 9.1e-09 35.5 0.5 2.9 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|126180234|ref|YP_001048199.1| - 1.3e-12 47.7 0.0 1.1e-08 35.0 0.0 2.4 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.6 gi|126180234|ref|YP_001048199.1| - 1.6e-12 47.9 2.2 1.2e-08 35.3 0.1 3.0 3 0 0 3 3 3 2 GAF domain GAF PF01590.26 gi|126180234|ref|YP_001048199.1| - 2.6e-10 41.0 0.0 3.7e-09 37.3 0.0 2.3 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|126180234|ref|YP_001048199.1| - 4e-08 33.1 0.1 5.6e-05 23.0 0.0 2.7 2 0 0 2 2 2 2 PAS domain HisKA PF00512.25 gi|126180234|ref|YP_001048199.1| - 3.9e-07 30.0 0.1 1.3e-06 28.4 0.1 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 gi|126180234|ref|YP_001048199.1| - 1.3e-05 25.5 0.0 3.5e-05 24.2 0.0 1.8 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|126180234|ref|YP_001048199.1| - 0.0059 16.8 0.1 1.7 8.8 0.0 3.3 2 1 0 2 2 2 1 PAS fold H_kinase_N PF12282.8 gi|126180234|ref|YP_001048199.1| - 0.047 13.6 0.1 0.18 11.7 0.1 1.9 2 0 0 2 2 2 0 Signal transduction histidine kinase SpoVT_C PF15714.5 gi|126180234|ref|YP_001048199.1| - 0.063 13.3 0.0 5.2 7.1 0.0 2.9 3 0 0 3 3 3 0 Stage V sporulation protein T C-terminal, transcription factor HEPN_AbiA_CTD PF18732.1 gi|126180234|ref|YP_001048199.1| - 0.069 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 HEPN like, Abia C-terminal domain Sm_multidrug_ex PF06695.11 gi|126180235|ref|YP_001048200.1| - 9.8e-14 52.0 2.1 9.8e-14 52.0 2.1 2.2 2 1 1 3 3 3 1 Putative small multi-drug export protein CTP_transf_like PF01467.26 gi|126180236|ref|YP_001048201.1| - 2e-17 63.7 0.0 2.4e-17 63.5 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|126180236|ref|YP_001048201.1| - 0.11 12.4 0.0 0.29 11.0 0.0 1.8 1 1 0 1 1 1 0 FAD synthetase Prok-JAB PF14464.6 gi|126180237|ref|YP_001048202.1| - 2.1e-06 27.5 0.1 3.6e-06 26.7 0.1 1.4 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|126180237|ref|YP_001048202.1| - 0.026 14.5 0.1 0.032 14.2 0.1 1.4 1 1 0 1 1 1 0 RadC-like JAB domain Fasciclin PF02469.22 gi|126180238|ref|YP_001048203.1| - 1.2e-29 103.2 0.6 1.9e-29 102.4 0.6 1.3 1 0 0 1 1 1 1 Fasciclin domain DUF4097 PF13349.6 gi|126180238|ref|YP_001048203.1| - 0.00012 21.5 0.2 0.00044 19.7 0.2 1.7 1 1 0 1 1 1 1 Putative adhesin Cupredoxin_1 PF13473.6 gi|126180238|ref|YP_001048203.1| - 0.00078 19.5 0.0 0.002 18.2 0.0 1.7 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|126180238|ref|YP_001048203.1| - 0.018 15.5 0.3 0.13 12.7 0.3 2.3 1 1 0 1 1 1 0 Copper binding proteins, plastocyanin/azurin family RbsD_FucU PF05025.13 gi|126180238|ref|YP_001048203.1| - 0.042 14.3 1.2 0.084 13.3 1.0 1.6 1 1 0 1 1 1 0 RbsD / FucU transport protein family DUF4346 PF14251.6 gi|126180239|ref|YP_001048204.1| - 7.9e-06 25.9 0.0 1.5e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) Pterin_bind PF00809.22 gi|126180239|ref|YP_001048204.1| - 0.0035 17.1 0.2 0.018 14.7 0.1 2.2 2 1 0 2 2 2 1 Pterin binding enzyme PHP_C PF13263.6 gi|126180240|ref|YP_001048205.1| - 2e-18 65.9 0.9 3.9e-18 65.0 0.9 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|126180240|ref|YP_001048205.1| - 3.1e-10 40.6 0.0 3.2e-10 40.6 0.0 1.1 1 0 0 1 1 1 1 PHP domain PEP-utilizers PF00391.23 gi|126180240|ref|YP_001048205.1| - 0.023 14.4 0.1 0.058 13.1 0.1 1.7 1 0 0 1 1 1 0 PEP-utilising enzyme, mobile domain PseudoU_synth_1 PF01416.20 gi|126180241|ref|YP_001048206.1| - 9.2e-27 93.6 0.0 3.9e-22 78.8 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase DUF2344 PF10105.9 gi|126180241|ref|YP_001048206.1| - 0.043 13.7 0.0 0.067 13.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2344) Glycos_transf_2 PF00535.26 gi|126180242|ref|YP_001048207.1| - 1.7e-18 67.0 0.0 2.3e-18 66.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|126180242|ref|YP_001048207.1| - 1.2e-06 28.6 0.0 1.5e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 ABC_sub_bind PF04392.12 gi|126180242|ref|YP_001048207.1| - 0.0029 16.9 0.0 0.0042 16.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter substrate binding protein Glyco_tranf_2_4 PF13704.6 gi|126180242|ref|YP_001048207.1| - 0.0029 18.1 0.0 0.0048 17.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Epimerase_2 PF02350.19 gi|126180243|ref|YP_001048208.1| - 2.5e-117 391.6 0.0 2.9e-117 391.4 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_4 PF13439.6 gi|126180243|ref|YP_001048208.1| - 0.00078 19.5 0.0 0.0014 18.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|126180243|ref|YP_001048208.1| - 0.01 16.3 0.0 0.021 15.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain UDPG_MGDP_dh_N PF03721.14 gi|126180244|ref|YP_001048209.1| - 1.1e-47 162.1 0.0 1.7e-47 161.4 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|126180244|ref|YP_001048209.1| - 4.3e-25 87.7 0.0 7.8e-25 86.9 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|126180244|ref|YP_001048209.1| - 6.8e-23 81.1 0.0 1.8e-22 79.8 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|126180244|ref|YP_001048209.1| - 0.0033 17.6 0.0 0.016 15.3 0.0 2.1 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|126180244|ref|YP_001048209.1| - 0.0086 15.5 0.0 0.086 12.2 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|126180244|ref|YP_001048209.1| - 0.0097 15.8 0.1 0.016 15.1 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|126180244|ref|YP_001048209.1| - 0.063 12.9 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GalP_UDP_transf PF01087.22 gi|126180244|ref|YP_001048209.1| - 0.15 12.5 0.0 0.39 11.1 0.0 1.7 2 0 0 2 2 2 0 Galactose-1-phosphate uridyl transferase, N-terminal domain AlaDh_PNT_C PF01262.21 gi|126180244|ref|YP_001048209.1| - 0.16 11.2 0.0 0.27 10.5 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Glycos_transf_1 PF00534.20 gi|126180245|ref|YP_001048210.1| - 1e-24 87.0 0.0 1.4e-24 86.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126180245|ref|YP_001048210.1| - 3.5e-19 69.6 0.0 5.4e-19 68.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|126180245|ref|YP_001048210.1| - 2e-14 54.3 0.2 3e-14 53.8 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|126180245|ref|YP_001048210.1| - 9.6e-11 42.0 0.0 1.6e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|126180245|ref|YP_001048210.1| - 9.3e-08 32.4 0.0 1.8e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Prenyltrans PF00432.21 gi|126180246|ref|YP_001048211.1| - 0.00012 21.7 0.0 0.057 13.2 0.0 2.8 2 0 0 2 2 2 2 Prenyltransferase and squalene oxidase repeat TED_complement PF07678.14 gi|126180246|ref|YP_001048211.1| - 0.00029 20.0 0.0 0.23 10.4 0.0 2.2 2 0 0 2 2 2 2 A-macroglobulin TED domain SQHop_cyclase_C PF13243.6 gi|126180246|ref|YP_001048211.1| - 0.0098 15.0 0.2 1.8 7.6 0.0 2.7 1 1 1 2 2 2 2 Squalene-hopene cyclase C-terminal domain SQHop_cyclase_N PF13249.6 gi|126180246|ref|YP_001048211.1| - 0.031 13.4 0.0 0.59 9.2 0.0 2.6 3 1 0 3 3 3 0 Squalene-hopene cyclase N-terminal domain GFO_IDH_MocA PF01408.22 gi|126180247|ref|YP_001048212.1| - 3.8e-24 85.8 0.0 9.3e-21 74.9 0.0 2.5 2 0 0 2 2 2 2 Oxidoreductase family, NAD-binding Rossmann fold ADH_zinc_N PF00107.26 gi|126180247|ref|YP_001048212.1| - 3.1e-19 69.2 0.1 1.6e-18 66.9 0.1 2.2 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|126180247|ref|YP_001048212.1| - 2.5e-06 28.6 0.0 9.2e-06 26.8 0.0 2.0 1 0 0 1 1 1 1 Zinc-binding dehydrogenase GFO_IDH_MocA_C PF02894.17 gi|126180247|ref|YP_001048212.1| - 5.8e-06 26.3 0.0 1.2e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain UDPG_MGDP_dh_N PF03721.14 gi|126180247|ref|YP_001048212.1| - 2.5e-05 23.9 0.1 5.1e-05 22.9 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|126180247|ref|YP_001048212.1| - 3.4e-05 23.3 0.1 0.00012 21.5 0.1 1.9 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|126180247|ref|YP_001048212.1| - 0.00062 20.0 2.5 0.00069 19.9 0.7 2.1 2 0 0 2 2 2 1 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|126180247|ref|YP_001048212.1| - 0.0033 16.7 2.2 0.0068 15.7 2.2 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|126180247|ref|YP_001048212.1| - 0.004 17.1 0.2 0.0096 15.8 0.2 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|126180247|ref|YP_001048212.1| - 0.0056 16.9 0.0 0.015 15.5 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|126180247|ref|YP_001048212.1| - 0.029 14.5 0.7 0.057 13.5 0.7 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Prefoldin_3 PF13758.6 gi|126180248|ref|YP_001048213.1| - 0.01 15.9 0.2 0.22 11.6 0.0 2.4 2 0 0 2 2 2 0 Prefoldin subunit Sacchrp_dh_NADP PF03435.18 gi|126180248|ref|YP_001048213.1| - 0.076 13.3 0.1 7.9 6.8 0.0 2.6 2 1 1 3 3 3 0 Saccharopine dehydrogenase NADP binding domain AMP-binding PF00501.28 gi|126180250|ref|YP_001048215.1| - 5.6e-07 28.5 0.0 7.4e-07 28.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding PF00501.28 gi|126180251|ref|YP_001048216.1| - 6.3e-07 28.3 0.0 9.5e-07 27.8 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme DUF1319 PF07028.11 gi|126180251|ref|YP_001048216.1| - 0.014 15.6 0.1 0.025 14.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1319) AMP-binding_C PF13193.6 gi|126180251|ref|YP_001048216.1| - 0.12 13.3 0.0 0.37 11.8 0.0 1.8 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain Acetyltransf_6 PF13480.7 gi|126180252|ref|YP_001048217.1| - 3.5e-09 37.0 0.3 5.5e-09 36.3 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|126180252|ref|YP_001048217.1| - 0.00035 19.6 0.0 0.00071 18.6 0.0 1.4 1 0 0 1 1 1 1 FemAB family Acetyltransf_6 PF13480.7 gi|126180253|ref|YP_001048218.1| - 6e-09 36.2 0.0 1.2e-08 35.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|126180253|ref|YP_001048218.1| - 0.0038 16.1 0.0 0.0077 15.2 0.0 1.4 1 0 0 1 1 1 1 FemAB family Acetyltransf_6 PF13480.7 gi|126180254|ref|YP_001048219.1| - 5.1e-17 62.4 0.1 2.2e-16 60.3 0.1 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|126180254|ref|YP_001048219.1| - 0.0049 15.8 0.6 0.1 11.4 0.0 2.2 1 1 0 2 2 2 2 FemAB family AMP-binding PF00501.28 gi|126180256|ref|YP_001048221.1| - 1.9e-07 30.0 0.0 2.5e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|126180256|ref|YP_001048221.1| - 0.18 12.8 0.0 0.56 11.2 0.0 1.9 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain PGA_cap PF09587.10 gi|126180257|ref|YP_001048222.1| - 2.4e-62 210.7 0.0 3.3e-62 210.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap TPP_enzyme_C PF02775.21 gi|126180258|ref|YP_001048223.1| - 2.6e-23 82.5 0.2 3.7e-23 82.0 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|126180258|ref|YP_001048223.1| - 0.12 11.5 0.2 0.24 10.5 0.1 1.5 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase POR_N PF01855.19 gi|126180259|ref|YP_001048224.1| - 9.7e-67 225.1 0.3 1.2e-66 224.8 0.3 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|126180259|ref|YP_001048224.1| - 7.7e-25 87.2 0.1 1.5e-24 86.3 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|126180259|ref|YP_001048224.1| - 2.3e-07 30.7 0.0 5.2e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain DXP_redisom_C PF08436.12 gi|126180259|ref|YP_001048224.1| - 0.14 12.3 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain POR PF01558.18 gi|126180260|ref|YP_001048225.1| - 5.5e-33 114.5 0.1 7.9e-33 114.0 0.1 1.2 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase GAPES3 PF17154.4 gi|126180260|ref|YP_001048225.1| - 0.078 13.0 0.2 0.5 10.4 0.0 1.9 2 0 0 2 2 2 0 Gammaproteobacterial periplasmic sensor domain DUF2178 PF09946.9 gi|126180260|ref|YP_001048225.1| - 0.079 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2178) Fer4 PF00037.27 gi|126180261|ref|YP_001048226.1| - 1.4e-14 53.2 15.8 2.8e-07 30.1 3.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|126180261|ref|YP_001048226.1| - 2e-10 40.3 14.2 4.8e-05 23.3 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126180261|ref|YP_001048226.1| - 4.4e-10 40.0 5.4 0.00019 21.9 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126180261|ref|YP_001048226.1| - 6.8e-09 35.3 13.9 2.4e-05 24.2 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|126180261|ref|YP_001048226.1| - 2.1e-08 35.0 9.7 0.0011 19.8 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|126180261|ref|YP_001048226.1| - 3.6e-08 33.4 21.6 5.4e-06 26.4 12.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126180261|ref|YP_001048226.1| - 3.5e-07 30.3 21.8 4e-05 23.7 13.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126180261|ref|YP_001048226.1| - 4.4e-07 30.3 4.7 0.0081 16.6 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126180261|ref|YP_001048226.1| - 5.8e-07 30.0 5.0 0.0026 18.3 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126180261|ref|YP_001048226.1| - 2e-06 27.8 12.9 0.0012 18.9 12.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|126180261|ref|YP_001048226.1| - 7e-06 26.7 12.3 0.004 17.9 2.5 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|126180261|ref|YP_001048226.1| - 1.2e-05 25.7 12.1 0.0014 19.1 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|126180261|ref|YP_001048226.1| - 0.0001 23.1 4.7 0.13 13.1 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126180261|ref|YP_001048226.1| - 0.00048 20.4 14.6 0.057 13.9 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|126180261|ref|YP_001048226.1| - 0.012 15.8 3.7 0.014 15.6 3.7 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126180261|ref|YP_001048226.1| - 0.22 12.5 18.1 0.82 10.8 4.9 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain PknG_rubred PF16919.5 gi|126180262|ref|YP_001048227.1| - 0.027 14.6 0.7 0.027 14.6 0.7 2.4 2 1 1 3 3 3 0 Protein kinase G rubredoxin domain DZR PF12773.7 gi|126180262|ref|YP_001048227.1| - 0.031 14.3 12.9 3.9 7.6 12.9 2.9 1 1 0 1 1 1 0 Double zinc ribbon Tnp_zf-ribbon_2 PF13842.6 gi|126180262|ref|YP_001048227.1| - 0.035 14.9 9.9 0.84 10.5 0.8 3.4 3 0 0 3 3 3 0 DDE_Tnp_1-like zinc-ribbon DUF35_N PF12172.8 gi|126180262|ref|YP_001048227.1| - 0.036 13.9 15.8 0.66 9.9 1.4 4.3 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_13 PF09855.9 gi|126180262|ref|YP_001048227.1| - 0.085 13.0 0.9 0.085 13.0 0.9 3.3 3 1 1 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn-ribbon_8 PF09723.10 gi|126180262|ref|YP_001048227.1| - 0.12 12.6 0.8 0.12 12.6 0.8 3.2 2 1 0 3 3 3 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|126180262|ref|YP_001048227.1| - 0.16 11.7 16.0 4.4 7.1 0.6 4.4 4 0 0 4 4 4 0 Rubredoxin metal binding domain DNA_RNApol_7kD PF03604.13 gi|126180262|ref|YP_001048227.1| - 0.22 11.2 17.6 1.1 8.9 0.9 4.0 3 1 1 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|126180262|ref|YP_001048227.1| - 0.24 10.8 14.1 4.2 6.9 0.1 4.3 4 0 0 4 4 4 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|126180262|ref|YP_001048227.1| - 0.4 11.1 9.7 0.65 10.4 0.4 2.5 2 1 0 2 2 2 0 Restriction alleviation protein Lar DUF2321 PF10083.9 gi|126180262|ref|YP_001048227.1| - 0.44 10.2 4.2 0.12 12.0 1.0 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) NOB1_Zn_bind PF08772.11 gi|126180262|ref|YP_001048227.1| - 0.53 10.5 10.1 0.19 11.9 1.2 2.8 2 1 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.6 gi|126180262|ref|YP_001048227.1| - 0.57 10.0 17.0 1.6 8.5 0.2 4.2 4 0 0 4 4 4 0 zinc-ribbon domain C1_1 PF00130.22 gi|126180262|ref|YP_001048227.1| - 1.2 9.0 14.0 0.7 9.8 2.1 3.1 2 2 1 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.7 gi|126180262|ref|YP_001048227.1| - 2.4 8.2 20.6 4 7.5 1.4 4.0 2 2 2 4 4 4 0 Transposase zinc-ribbon domain ATPase-cat_bd PF12156.8 gi|126180262|ref|YP_001048227.1| - 8.4 7.2 12.3 0.68 10.7 0.7 2.9 2 1 0 2 2 2 0 Putative metal-binding domain of cation transport ATPase OrfB_Zn_ribbon PF07282.11 gi|126180262|ref|YP_001048227.1| - 8.9 6.3 11.7 4.4 7.3 0.9 2.6 2 1 0 2 2 2 0 Putative transposase DNA-binding domain HSP20 PF00011.21 gi|126180263|ref|YP_001048228.1| - 4e-08 33.3 0.0 2.4e-06 27.6 0.0 2.0 1 1 0 1 1 1 1 Hsp20/alpha crystallin family PIH1_CS PF18201.1 gi|126180263|ref|YP_001048228.1| - 0.0013 19.1 0.0 0.0016 18.8 0.0 1.2 1 0 0 1 1 1 1 PIH1 CS-like domain CS PF04969.16 gi|126180263|ref|YP_001048228.1| - 0.0087 17.1 0.0 0.012 16.6 0.0 1.3 1 1 0 1 1 1 1 CS domain ArsA_HSP20 PF17886.1 gi|126180263|ref|YP_001048228.1| - 0.014 14.9 0.0 0.3 10.7 0.0 2.1 2 0 0 2 2 2 0 HSP20-like domain found in ArsA Thioredox_DsbH PF03190.15 gi|126180264|ref|YP_001048229.1| - 4.2e-75 251.2 0.0 6.8e-75 250.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|126180264|ref|YP_001048229.1| - 8.8e-11 41.8 0.0 1.9e-10 40.8 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.11 gi|126180264|ref|YP_001048229.1| - 0.00014 21.2 1.0 0.0061 15.9 0.1 2.5 2 1 0 2 2 2 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) C5-epim_C PF06662.13 gi|126180264|ref|YP_001048229.1| - 0.018 14.6 0.4 7.1 6.1 0.1 2.5 2 0 0 2 2 2 0 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_76 PF03663.14 gi|126180264|ref|YP_001048229.1| - 0.027 14.0 0.6 7.2 6.0 0.0 2.9 3 0 0 3 3 3 0 Glycosyl hydrolase family 76 Thioredoxin_2 PF13098.6 gi|126180264|ref|YP_001048229.1| - 0.029 14.8 0.0 0.068 13.6 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin-like domain Glyco_hydro_88 PF07470.13 gi|126180264|ref|YP_001048229.1| - 0.042 12.9 0.1 5.5 6.0 0.0 2.5 2 0 0 2 2 2 0 Glycosyl Hydrolase Family 88 Flavi_NS2B PF01002.19 gi|126180264|ref|YP_001048229.1| - 0.22 11.4 0.0 0.52 10.2 0.0 1.6 1 0 0 1 1 1 0 Flavivirus non-structural protein NS2B OsmC PF02566.19 gi|126180265|ref|YP_001048230.1| - 1.1e-20 73.9 0.0 1.9e-20 73.2 0.0 1.3 1 0 0 1 1 1 1 OsmC-like protein Rhodanese PF00581.20 gi|126180266|ref|YP_001048231.1| - 2e-24 86.2 0.1 3.1e-12 47.0 0.0 2.6 2 1 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.27 gi|126180266|ref|YP_001048231.1| - 2.9e-09 37.2 1.4 9.2e-09 35.6 0.3 2.3 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily CorC_HlyC PF03471.17 gi|126180266|ref|YP_001048231.1| - 0.14 12.2 0.0 14 5.8 0.0 2.8 3 0 0 3 3 3 0 Transporter associated domain ATP-grasp_5 PF13549.6 gi|126180267|ref|YP_001048232.1| - 2e-68 230.2 0.1 3.1e-68 229.6 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|126180267|ref|YP_001048232.1| - 1.4e-52 177.2 0.3 4.1e-52 175.6 0.3 1.9 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|126180267|ref|YP_001048232.1| - 5.6e-27 94.6 0.0 1.6e-26 93.1 0.0 1.9 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|126180267|ref|YP_001048232.1| - 1.1e-09 38.8 0.0 3.9e-09 37.1 0.0 2.0 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|126180267|ref|YP_001048232.1| - 0.041 13.4 0.0 0.07 12.7 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain DUF2785 PF10978.8 gi|126180267|ref|YP_001048232.1| - 0.25 11.1 0.0 0.56 9.9 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2785) Peripla_BP_2 PF01497.18 gi|126180268|ref|YP_001048233.1| - 2.9e-23 82.7 0.0 5.3e-23 81.8 0.0 1.5 2 0 0 2 2 2 1 Periplasmic binding protein Peripla_BP_2 PF01497.18 gi|126180269|ref|YP_001048234.1| - 1.6e-22 80.3 0.0 2.7e-22 79.5 0.0 1.4 2 0 0 2 2 2 1 Periplasmic binding protein FecCD PF01032.18 gi|126180270|ref|YP_001048235.1| - 4e-86 288.9 34.1 4.9e-86 288.6 34.1 1.0 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|126180271|ref|YP_001048236.1| - 6.7e-31 107.6 0.0 8.4e-31 107.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126180271|ref|YP_001048236.1| - 7.6e-11 42.4 1.7 1.8e-05 24.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|126180271|ref|YP_001048236.1| - 3e-05 24.6 0.0 4.4e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|126180271|ref|YP_001048236.1| - 5.1e-05 22.9 0.0 0.0001 22.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|126180271|ref|YP_001048236.1| - 0.00053 19.5 0.0 0.016 14.6 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|126180271|ref|YP_001048236.1| - 0.00057 20.3 0.1 0.0012 19.2 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|126180271|ref|YP_001048236.1| - 0.0014 18.6 0.0 0.0029 17.5 0.0 1.5 2 0 0 2 2 1 1 RsgA GTPase AAA_15 PF13175.6 gi|126180271|ref|YP_001048236.1| - 0.0094 15.7 0.0 0.01 15.6 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain HSM3_N PF18795.1 gi|126180271|ref|YP_001048236.1| - 0.0098 15.3 0.2 0.014 14.8 0.2 1.2 1 0 0 1 1 1 1 DNA mismatch repair protein HSM3, N terminal domain SRP54 PF00448.22 gi|126180271|ref|YP_001048236.1| - 0.012 15.2 0.1 0.021 14.5 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|126180271|ref|YP_001048236.1| - 0.016 14.9 0.0 0.026 14.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|126180271|ref|YP_001048236.1| - 0.02 15.2 0.3 0.1 12.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|126180271|ref|YP_001048236.1| - 0.022 14.1 0.0 0.036 13.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|126180271|ref|YP_001048236.1| - 0.024 15.1 0.0 0.083 13.3 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|126180271|ref|YP_001048236.1| - 0.027 14.4 0.0 0.045 13.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain ABC_ATPase PF09818.9 gi|126180271|ref|YP_001048236.1| - 0.031 13.1 0.2 4.6 5.9 0.0 2.9 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_24 PF13479.6 gi|126180271|ref|YP_001048236.1| - 0.032 13.9 0.0 0.052 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|126180271|ref|YP_001048236.1| - 0.041 13.9 0.1 0.21 11.6 0.1 2.0 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|126180271|ref|YP_001048236.1| - 0.051 13.5 0.3 0.13 12.1 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_13 PF13166.6 gi|126180271|ref|YP_001048236.1| - 0.053 12.2 0.0 2.7 6.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|126180271|ref|YP_001048236.1| - 0.059 13.7 1.5 0.27 11.5 0.9 2.4 1 1 1 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|126180271|ref|YP_001048236.1| - 0.087 12.0 0.1 0.97 8.6 0.0 2.2 2 1 0 2 2 2 0 NB-ARC domain AAA_14 PF13173.6 gi|126180271|ref|YP_001048236.1| - 0.11 12.5 0.1 0.58 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 gi|126180271|ref|YP_001048236.1| - 0.23 10.8 0.8 11 5.3 0.3 2.2 2 0 0 2 2 2 0 Bacterial TniB protein DUF1622 PF07784.11 gi|126180272|ref|YP_001048237.1| - 1.1e-23 82.9 1.9 1.1e-23 82.9 1.9 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1622) NUDIX PF00293.28 gi|126180273|ref|YP_001048238.1| - 1.2e-14 54.5 1.3 1.4e-14 54.2 1.3 1.1 1 0 0 1 1 1 1 NUDIX domain UDG PF03167.19 gi|126180274|ref|YP_001048239.1| - 2.1e-42 144.7 0.0 2.8e-42 144.3 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily SNN_transmemb PF09049.10 gi|126180275|ref|YP_001048240.1| - 0.069 13.1 0.8 0.16 11.9 0.8 1.6 1 0 0 1 1 1 0 Stannin transmembrane MerE PF05052.12 gi|126180278|ref|YP_001048243.1| - 0.42 10.6 1.4 2 8.4 0.0 2.1 2 0 0 2 2 2 0 MerE protein tRNA-synt_2 PF00152.20 gi|126180281|ref|YP_001048246.1| - 7.3e-88 294.6 0.4 1e-87 294.2 0.4 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|126180281|ref|YP_001048246.1| - 1.3e-13 50.8 0.9 2.5e-13 49.8 0.9 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|126180281|ref|YP_001048246.1| - 4.7e-06 26.3 0.5 0.0041 16.7 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) TT1725 PF18324.1 gi|126180281|ref|YP_001048246.1| - 0.017 15.2 0.0 0.044 13.9 0.0 1.6 1 0 0 1 1 1 0 Hypothetical protein TT1725 DUF4294 PF14127.6 gi|126180281|ref|YP_001048246.1| - 0.09 12.7 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4294) DUF2196 PF09962.9 gi|126180282|ref|YP_001048247.1| - 3.5e-33 113.4 2.3 4.1e-33 113.2 2.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) HATPase_c PF02518.26 gi|126180283|ref|YP_001048248.1| - 1.5e-23 83.5 0.0 2.9e-23 82.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 gi|126180283|ref|YP_001048248.1| - 1.7e-07 31.5 1.3 3.9e-07 30.4 1.3 1.7 1 0 0 1 1 1 1 HAMP domain HisKA PF00512.25 gi|126180283|ref|YP_001048248.1| - 0.00013 21.9 1.6 0.0004 20.4 0.2 2.5 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|126180283|ref|YP_001048248.1| - 0.0077 16.2 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain ApoLp-III PF07464.11 gi|126180283|ref|YP_001048248.1| - 0.082 13.0 3.1 0.16 12.0 3.1 1.5 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) HATPase_c_5 PF14501.6 gi|126180283|ref|YP_001048248.1| - 0.092 12.7 0.0 0.28 11.1 0.0 1.8 1 0 0 1 1 1 0 GHKL domain Prominin PF05478.11 gi|126180283|ref|YP_001048248.1| - 0.28 9.1 3.4 0.42 8.5 3.4 1.2 1 0 0 1 1 1 0 Prominin Fib_alpha PF08702.10 gi|126180283|ref|YP_001048248.1| - 2.2 8.4 6.2 32 4.7 6.2 2.2 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family HATPase_c PF02518.26 gi|126180284|ref|YP_001048249.1| - 6.5e-20 71.7 0.0 1.7e-19 70.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 gi|126180284|ref|YP_001048249.1| - 9.9e-11 41.9 0.4 2.5e-10 40.6 0.4 1.8 1 0 0 1 1 1 1 HAMP domain HATPase_c_2 PF13581.6 gi|126180284|ref|YP_001048249.1| - 0.0081 16.1 0.0 0.021 14.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 gi|126180285|ref|YP_001048250.1| - 5.4e-21 75.2 0.0 1.5e-20 73.8 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 gi|126180285|ref|YP_001048250.1| - 2.8e-06 27.6 0.2 6.9e-06 26.4 0.2 1.7 1 0 0 1 1 1 1 HAMP domain HATPase_c_2 PF13581.6 gi|126180285|ref|YP_001048250.1| - 0.001 19.0 2.7 0.0022 17.9 0.1 2.7 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|126180285|ref|YP_001048250.1| - 0.017 15.0 0.0 0.38 10.7 0.0 2.4 2 0 0 2 2 2 0 GHKL domain COG2 PF06148.11 gi|126180285|ref|YP_001048250.1| - 0.019 15.0 0.3 0.042 13.9 0.3 1.5 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 TraG_N PF07916.11 gi|126180285|ref|YP_001048250.1| - 0.4 9.5 0.9 0.59 8.9 0.9 1.2 1 0 0 1 1 1 0 TraG-like protein, N-terminal region Cpn60_TCP1 PF00118.24 gi|126180286|ref|YP_001048251.1| - 1.4e-181 604.4 19.7 1.6e-181 604.2 19.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF533 PF04391.12 gi|126180286|ref|YP_001048251.1| - 4.2 6.9 8.7 0.14 11.7 0.4 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF533) HTH_3 PF01381.22 gi|126180287|ref|YP_001048252.1| - 7e-11 42.0 0.0 1.9e-10 40.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|126180287|ref|YP_001048252.1| - 3.9e-08 33.5 0.1 1.5e-07 31.6 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|126180287|ref|YP_001048252.1| - 3.9e-08 33.2 0.4 1.4e-07 31.4 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|126180287|ref|YP_001048252.1| - 0.00021 21.2 0.0 0.002 18.0 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_23 PF13384.6 gi|126180287|ref|YP_001048252.1| - 0.0067 16.2 0.0 0.022 14.6 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_25 PF13413.6 gi|126180287|ref|YP_001048252.1| - 0.015 15.1 0.4 0.12 12.2 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|126180287|ref|YP_001048252.1| - 0.017 15.1 0.0 0.048 13.6 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain NUMOD1 PF07453.13 gi|126180287|ref|YP_001048252.1| - 0.056 13.7 0.0 0.14 12.5 0.0 1.7 1 0 0 1 1 1 0 NUMOD1 domain HTH_38 PF13936.6 gi|126180287|ref|YP_001048252.1| - 0.059 13.1 0.0 0.56 10.0 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|126180287|ref|YP_001048252.1| - 0.065 13.2 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|126180287|ref|YP_001048252.1| - 0.11 12.4 0.0 0.27 11.1 0.0 1.7 1 0 0 1 1 1 0 MarR family Sigma70_r4 PF04545.16 gi|126180287|ref|YP_001048252.1| - 0.11 12.0 0.2 1.6 8.3 0.1 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_Tnp_1_2 PF13022.6 gi|126180287|ref|YP_001048252.1| - 0.12 12.5 0.0 1.8 8.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_24 PF13412.6 gi|126180287|ref|YP_001048252.1| - 0.13 11.9 0.0 0.33 10.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|126180287|ref|YP_001048252.1| - 0.14 12.1 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_26 PF13443.6 gi|126180287|ref|YP_001048252.1| - 0.15 12.5 0.0 0.57 10.7 0.0 2.0 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain TetR_N PF00440.23 gi|126180287|ref|YP_001048252.1| - 0.16 11.8 0.0 1.8 8.4 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family DUF1743 PF08489.11 gi|126180288|ref|YP_001048253.1| - 6.6e-39 132.6 0.0 1.1e-38 131.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) Zn_Tnp_IS1595 PF12760.7 gi|126180288|ref|YP_001048253.1| - 0.0091 16.0 1.1 0.019 14.9 1.1 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DZR PF12773.7 gi|126180288|ref|YP_001048253.1| - 0.12 12.4 0.8 0.28 11.2 0.8 1.6 1 0 0 1 1 1 0 Double zinc ribbon C1_1 PF00130.22 gi|126180288|ref|YP_001048253.1| - 0.15 12.0 0.2 0.29 11.1 0.2 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) OrfB_Zn_ribbon PF07282.11 gi|126180288|ref|YP_001048253.1| - 0.18 11.8 2.8 0.34 10.9 2.8 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_ribbon_SprT PF17283.2 gi|126180288|ref|YP_001048253.1| - 0.27 11.1 3.8 0.6 10.1 3.8 1.6 1 0 0 1 1 1 0 SprT-like zinc ribbon domain DS PF01916.17 gi|126180289|ref|YP_001048254.1| - 6.5e-95 317.7 0.0 7.3e-95 317.5 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase NBD_C PF17042.5 gi|126180289|ref|YP_001048254.1| - 0.077 13.5 0.0 0.15 12.6 0.0 1.5 1 0 0 1 1 1 0 Nucleotide-binding C-terminal domain OMPdecase PF00215.24 gi|126180290|ref|YP_001048255.1| - 5.1e-37 127.6 0.0 5.9e-37 127.4 0.0 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NRDD PF13597.6 gi|126180291|ref|YP_001048256.1| - 5.1e-14 52.0 4.3 5.1e-14 52.0 4.3 2.5 1 1 1 2 2 2 1 Anaerobic ribonucleoside-triphosphate reductase zinc_ribbon_15 PF17032.5 gi|126180291|ref|YP_001048256.1| - 0.00087 20.0 10.5 0.46 11.3 2.1 3.1 3 0 0 3 3 3 2 zinc-ribbon family DZR PF12773.7 gi|126180291|ref|YP_001048256.1| - 0.0019 18.2 15.0 0.017 15.1 3.8 2.7 1 1 1 2 2 2 2 Double zinc ribbon TerY_C PF15616.6 gi|126180291|ref|YP_001048256.1| - 0.0019 18.3 6.9 0.0026 17.9 6.9 1.3 1 0 0 1 1 1 1 TerY-C metal binding domain NOB1_Zn_bind PF08772.11 gi|126180291|ref|YP_001048256.1| - 0.03 14.5 12.2 0.85 9.8 3.1 3.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like RecR PF02132.15 gi|126180291|ref|YP_001048256.1| - 0.047 13.3 9.6 0.11 12.1 1.7 3.1 2 1 0 2 2 2 0 RecR protein zinc_ribbon_2 PF13240.6 gi|126180291|ref|YP_001048256.1| - 0.053 13.3 19.3 0.26 11.1 0.1 4.0 2 2 1 3 3 3 0 zinc-ribbon domain zf-Di19 PF05605.12 gi|126180291|ref|YP_001048256.1| - 0.2 11.9 18.1 0.85 10.0 18.1 2.0 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding PolC_DP2 PF03833.13 gi|126180291|ref|YP_001048256.1| - 0.22 9.4 5.4 0.23 9.3 5.4 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Zn_Tnp_IS91 PF14319.6 gi|126180291|ref|YP_001048256.1| - 0.26 11.4 13.2 0.61 10.1 0.6 2.7 1 1 2 3 3 3 0 Transposase zinc-binding domain zf-ribbon_3 PF13248.6 gi|126180291|ref|YP_001048256.1| - 0.35 10.3 16.4 2.8 7.5 1.0 3.6 2 2 1 3 3 3 0 zinc-ribbon domain HypA PF01155.19 gi|126180291|ref|YP_001048256.1| - 0.39 10.8 15.5 0.31 11.1 2.5 2.6 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|126180291|ref|YP_001048256.1| - 0.39 10.9 22.0 1.8e+04 -6.7 22.0 3.7 1 1 0 1 1 0 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|126180291|ref|YP_001048256.1| - 0.53 10.3 21.3 0.71 9.9 2.4 4.4 2 1 2 4 4 4 0 Transposase zinc-ribbon domain DUF1610 PF07754.11 gi|126180291|ref|YP_001048256.1| - 1.1 9.3 15.1 7 6.7 2.0 3.9 4 0 0 4 4 3 0 Domain of unknown function (DUF1610) zinc-ribbons_6 PF07191.12 gi|126180291|ref|YP_001048256.1| - 1.3 9.0 17.9 4.8 7.2 5.5 2.8 1 1 1 2 2 2 0 zinc-ribbons FYVE PF01363.21 gi|126180291|ref|YP_001048256.1| - 2 8.6 17.3 2 8.6 9.9 2.4 1 1 1 2 2 2 0 FYVE zinc finger Nudix_N_2 PF14803.6 gi|126180291|ref|YP_001048256.1| - 2.2 8.3 18.9 8.6 6.4 0.2 4.4 3 1 1 4 4 4 0 Nudix N-terminal Ogr_Delta PF04606.12 gi|126180291|ref|YP_001048256.1| - 2.3 8.3 0.0 2.3 8.3 0.0 4.5 4 1 1 5 5 5 0 Ogr/Delta-like zinc finger CbiZ PF01955.18 gi|126180292|ref|YP_001048257.1| - 4.7e-35 121.4 1.0 5.7e-35 121.2 1.0 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase zf-like PF04071.12 gi|126180292|ref|YP_001048257.1| - 5.4e-30 103.1 7.1 8.2e-30 102.6 7.1 1.3 1 0 0 1 1 1 1 Cysteine-rich small domain DUF1858 PF08984.11 gi|126180293|ref|YP_001048258.1| - 7.3e-20 70.9 0.0 8.2e-20 70.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1858) ScdA_N PF04405.14 gi|126180293|ref|YP_001048258.1| - 0.0037 16.9 0.1 0.029 14.0 0.1 1.9 1 1 0 1 1 1 1 Domain of Unknown function (DUF542) HRDC PF00570.23 gi|126180293|ref|YP_001048258.1| - 0.13 12.3 0.0 19 5.4 0.0 2.0 2 0 0 2 2 2 0 HRDC domain tRNA_anti-codon PF01336.25 gi|126180294|ref|YP_001048259.1| - 1.7e-05 24.7 0.0 0.11 12.5 0.0 2.5 2 0 0 2 2 2 2 OB-fold nucleic acid binding domain RMI2 PF16100.5 gi|126180295|ref|YP_001048260.1| - 0.033 14.0 0.0 0.043 13.6 0.0 1.2 1 0 0 1 1 1 0 RecQ-mediated genome instability protein 2 Frag1 PF10277.9 gi|126180296|ref|YP_001048261.1| - 0.055 13.0 0.6 0.065 12.8 0.6 1.1 1 0 0 1 1 1 0 Frag1/DRAM/Sfk1 family HTH_7 PF02796.15 gi|126180297|ref|YP_001048262.1| - 1.3e-10 41.2 0.0 2.2e-10 40.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Resolvase PF00239.21 gi|126180297|ref|YP_001048262.1| - 7.8e-09 35.8 0.0 1.2e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_23 PF13384.6 gi|126180297|ref|YP_001048262.1| - 1.2e-06 28.1 0.2 2.7e-06 27.0 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|126180297|ref|YP_001048262.1| - 9.3e-05 22.4 0.1 0.00051 20.0 0.0 2.1 1 1 1 2 2 2 1 Winged helix-turn helix MarR_2 PF12802.7 gi|126180297|ref|YP_001048262.1| - 0.00051 19.9 0.0 0.0012 18.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_psq PF05225.16 gi|126180297|ref|YP_001048262.1| - 0.00082 19.1 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_38 PF13936.6 gi|126180297|ref|YP_001048262.1| - 0.0016 18.2 0.0 0.0026 17.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|126180297|ref|YP_001048262.1| - 0.0018 18.1 0.1 0.0029 17.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|126180297|ref|YP_001048262.1| - 0.0019 18.3 0.0 0.0052 16.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_32 PF13565.6 gi|126180297|ref|YP_001048262.1| - 0.0036 17.9 0.0 0.0074 16.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 gi|126180297|ref|YP_001048262.1| - 0.0048 16.3 0.0 0.013 14.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 gi|126180297|ref|YP_001048262.1| - 0.017 14.8 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_3 PF01381.22 gi|126180297|ref|YP_001048262.1| - 0.038 14.1 0.0 0.069 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4 PF04545.16 gi|126180297|ref|YP_001048262.1| - 0.046 13.2 0.0 0.074 12.6 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 CENP-B_N PF04218.13 gi|126180297|ref|YP_001048262.1| - 0.056 13.1 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain MarR PF01047.22 gi|126180297|ref|YP_001048262.1| - 0.08 12.9 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|126180297|ref|YP_001048262.1| - 0.093 13.2 0.0 0.2 12.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain PAX PF00292.18 gi|126180297|ref|YP_001048262.1| - 0.099 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 'Paired box' domain DUF433 PF04255.14 gi|126180297|ref|YP_001048262.1| - 0.12 12.2 0.0 2.7 7.9 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF433) HTH_11 PF08279.12 gi|126180297|ref|YP_001048262.1| - 0.18 11.8 0.1 0.4 10.7 0.1 1.5 1 0 0 1 1 1 0 HTH domain DHBP_synthase PF00926.19 gi|126180298|ref|YP_001048263.1| - 1.1e-57 194.7 0.1 1.3e-57 194.5 0.1 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.16 gi|126180299|ref|YP_001048264.1| - 2.3e-44 150.4 0.0 3.2e-44 149.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR PF01047.22 gi|126180299|ref|YP_001048264.1| - 0.00011 22.0 0.0 0.00029 20.7 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|126180299|ref|YP_001048264.1| - 0.0016 18.4 0.0 0.0039 17.1 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|126180299|ref|YP_001048264.1| - 0.003 17.4 0.0 0.0062 16.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|126180299|ref|YP_001048264.1| - 0.13 12.1 0.1 0.22 11.4 0.1 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|126180299|ref|YP_001048264.1| - 0.14 11.7 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|126180300|ref|YP_001048265.1| - 3.2e-08 33.5 0.0 1.2e-07 31.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|126180300|ref|YP_001048265.1| - 8.7e-05 22.5 0.0 0.00018 21.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|126180300|ref|YP_001048265.1| - 0.00011 22.5 0.0 0.00024 21.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DDT PF02791.17 gi|126180300|ref|YP_001048265.1| - 0.075 13.4 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 DDT domain ACP_syn_III_C PF08541.10 gi|126180301|ref|YP_001048266.1| - 9.7e-12 44.9 0.0 1.9e-11 43.9 0.0 1.5 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_N PF01154.17 gi|126180301|ref|YP_001048266.1| - 1.4e-07 31.6 0.2 1.9e-07 31.2 0.2 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_N PF00108.23 gi|126180301|ref|YP_001048266.1| - 0.00018 21.0 0.3 0.00028 20.3 0.3 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_C PF08540.10 gi|126180301|ref|YP_001048266.1| - 0.00038 20.2 0.1 0.028 14.0 0.0 2.1 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.10 gi|126180301|ref|YP_001048266.1| - 6.5 6.7 6.4 1.1 9.2 1.7 2.1 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 gi|126180302|ref|YP_001048267.1| - 4.4e-29 101.6 0.1 7.9e-29 100.8 0.1 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|126180302|ref|YP_001048267.1| - 3.8e-12 45.9 1.9 3.8e-12 45.9 1.9 2.8 3 1 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|126180302|ref|YP_001048267.1| - 3.5e-05 23.5 13.8 8.1e-05 22.3 7.4 3.4 3 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain OB_aCoA_assoc PF01796.17 gi|126180303|ref|YP_001048268.1| - 5.6e-20 71.1 0.1 7.6e-20 70.7 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|126180303|ref|YP_001048268.1| - 5.9e-13 48.4 2.1 9.5e-13 47.8 2.1 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.6 gi|126180303|ref|YP_001048268.1| - 0.11 12.4 3.5 4 7.4 0.0 2.6 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_6 PF14599.6 gi|126180303|ref|YP_001048268.1| - 0.13 12.3 0.9 6 7.0 0.1 2.5 2 0 0 2 2 2 0 Zinc-ribbon zf-HYPF PF07503.12 gi|126180303|ref|YP_001048268.1| - 3.7 7.4 7.1 5.9 6.7 0.4 2.8 3 0 0 3 3 3 0 HypF finger Met_10 PF02475.16 gi|126180304|ref|YP_001048269.1| - 3.5e-45 154.2 0.0 4.7e-45 153.8 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|126180304|ref|YP_001048269.1| - 3.5e-16 58.8 0.2 1.1e-15 57.2 0.1 1.9 2 0 0 2 2 2 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_25 PF13649.6 gi|126180304|ref|YP_001048269.1| - 7e-05 23.5 0.0 0.00013 22.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|126180304|ref|YP_001048269.1| - 0.00023 20.6 0.0 0.00032 20.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|126180304|ref|YP_001048269.1| - 0.0024 17.7 0.0 0.0035 17.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|126180304|ref|YP_001048269.1| - 0.0025 17.5 0.0 0.0047 16.6 0.0 1.4 2 0 0 2 2 2 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|126180304|ref|YP_001048269.1| - 0.0031 17.1 0.0 0.0055 16.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain TRM PF02005.16 gi|126180304|ref|YP_001048269.1| - 0.017 14.3 0.0 0.021 14.0 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltr_RsmB-F PF01189.17 gi|126180304|ref|YP_001048269.1| - 0.028 14.1 0.0 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F tRNA_U5-meth_tr PF05958.11 gi|126180304|ref|YP_001048269.1| - 0.033 13.2 0.0 0.046 12.7 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_15 PF09445.10 gi|126180304|ref|YP_001048269.1| - 0.23 11.1 0.0 0.3 10.6 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase HMG-CoA_red PF00368.18 gi|126180305|ref|YP_001048270.1| - 2.8e-125 418.2 6.6 3.1e-125 418.0 6.6 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase NTP_transf_2 PF01909.23 gi|126180306|ref|YP_001048271.1| - 3.4e-11 43.3 0.0 4.3e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|126180306|ref|YP_001048271.1| - 5e-10 39.3 0.0 5.9e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|126180307|ref|YP_001048272.1| - 2.4e-23 82.3 0.2 2.9e-23 82.0 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 Acetyltransf_1 PF00583.25 gi|126180308|ref|YP_001048273.1| - 8e-19 68.0 0.2 1e-18 67.7 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|126180308|ref|YP_001048273.1| - 2.1e-15 56.9 0.5 2.9e-15 56.4 0.5 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|126180308|ref|YP_001048273.1| - 4.9e-15 55.6 0.1 5.8e-15 55.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|126180308|ref|YP_001048273.1| - 3.2e-09 36.6 0.1 4.8e-09 36.1 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|126180308|ref|YP_001048273.1| - 2.8e-08 33.9 0.5 1.8e-07 31.3 0.5 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|126180308|ref|YP_001048273.1| - 0.00031 20.5 0.1 0.00038 20.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_8 PF13523.6 gi|126180308|ref|YP_001048273.1| - 0.058 13.1 0.1 0.09 12.5 0.1 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|126180308|ref|YP_001048273.1| - 0.065 13.4 0.0 0.077 13.1 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF1015 PF06245.11 gi|126180309|ref|YP_001048274.1| - 1.8e-103 346.4 0.0 2e-103 346.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1015) PIG-L PF02585.17 gi|126180309|ref|YP_001048274.1| - 0.091 13.4 0.1 0.32 11.6 0.0 1.8 1 1 1 2 2 2 0 GlcNAc-PI de-N-acetylase HisG PF01634.18 gi|126180310|ref|YP_001048275.1| - 7.6e-40 136.5 0.0 1.1e-39 136.0 0.0 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|126180310|ref|YP_001048275.1| - 3.4e-21 75.1 0.2 1.2e-20 73.5 0.1 2.0 2 0 0 2 2 2 1 HisG, C-terminal domain FmdE PF02663.14 gi|126180311|ref|YP_001048276.1| - 3.5e-41 140.3 0.0 4.3e-41 140.0 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|126180311|ref|YP_001048276.1| - 3.1e-08 33.4 2.8 7.2e-08 32.2 2.8 1.7 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger OrfB_Zn_ribbon PF07282.11 gi|126180311|ref|YP_001048276.1| - 0.055 13.4 0.4 0.1 12.5 0.4 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|126180311|ref|YP_001048276.1| - 0.16 11.9 2.2 0.23 11.5 1.0 1.9 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-RRN7 PF11781.8 gi|126180311|ref|YP_001048276.1| - 0.26 11.0 4.7 0.081 12.6 1.4 1.9 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-ACC PF17848.1 gi|126180311|ref|YP_001048276.1| - 1.8 8.7 4.2 1.1 9.4 1.0 2.3 2 1 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Vps4_C PF09336.10 gi|126180313|ref|YP_001048278.1| - 0.06 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Vps4 C terminal oligomerisation domain Nas2_N PF18265.1 gi|126180317|ref|YP_001048282.1| - 0.017 15.0 0.0 8.1 6.4 0.0 2.3 2 0 0 2 2 2 0 Nas2 N_terminal domain Pilin_N PF07790.11 gi|126180317|ref|YP_001048282.1| - 1.8 9.6 5.0 1.9 9.5 3.0 2.2 2 1 0 2 2 2 0 Archaeal Type IV pilin, N-terminal eIF-1a PF01176.19 gi|126180318|ref|YP_001048283.1| - 9e-19 67.1 0.4 1e-18 66.8 0.4 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 FAM83 PF07894.12 gi|126180318|ref|YP_001048283.1| - 0.15 11.6 0.0 0.18 11.4 0.0 1.0 1 0 0 1 1 1 0 FAM83 A-H DUF2238 PF09997.9 gi|126180319|ref|YP_001048284.1| - 0.00013 21.8 0.8 0.00013 21.8 0.8 2.2 1 1 1 2 2 2 2 Predicted membrane protein (DUF2238) Peptidase_U4 PF03419.13 gi|126180319|ref|YP_001048284.1| - 0.0012 18.2 1.1 0.0012 18.2 1.1 1.8 1 1 1 2 2 2 1 Sporulation factor SpoIIGA Metallophos PF00149.28 gi|126180320|ref|YP_001048285.1| - 3.4e-11 44.0 0.8 7.7e-11 42.9 0.8 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|126180320|ref|YP_001048285.1| - 9.9e-07 29.1 2.0 2.7e-06 27.7 2.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Pyr_redox PF00070.27 gi|126180320|ref|YP_001048285.1| - 0.099 13.2 0.0 0.46 11.1 0.0 2.1 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Mrr_cat PF04471.12 gi|126180321|ref|YP_001048286.1| - 2.4e-07 30.8 0.1 6.4e-07 29.4 0.0 1.7 2 0 0 2 2 2 1 Restriction endonuclease ATP-cone PF03477.16 gi|126180321|ref|YP_001048286.1| - 8.5e-05 23.1 0.1 0.00042 20.8 0.0 2.1 2 0 0 2 2 2 1 ATP cone domain UPF0102 PF02021.17 gi|126180321|ref|YP_001048286.1| - 0.0012 19.0 0.1 0.0025 18.0 0.1 1.5 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 MTES_1575 PF18741.1 gi|126180321|ref|YP_001048286.1| - 0.067 13.4 0.1 0.22 11.7 0.0 1.8 2 0 0 2 2 2 0 REase_MTES_1575 PEP-utilizers PF00391.23 gi|126180321|ref|YP_001048286.1| - 0.1 12.4 0.8 0.21 11.3 0.3 1.8 2 0 0 2 2 2 0 PEP-utilising enzyme, mobile domain AHJR-like PF18743.1 gi|126180321|ref|YP_001048286.1| - 0.12 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 REase_AHJR-like BAF PF02961.14 gi|126180321|ref|YP_001048286.1| - 0.19 12.1 0.0 0.44 11.0 0.0 1.6 1 0 0 1 1 1 0 Barrier to autointegration factor HHH_5 PF14520.6 gi|126180321|ref|YP_001048286.1| - 1.4 9.5 4.8 8.1 7.1 0.5 3.3 4 0 0 4 4 4 0 Helix-hairpin-helix domain ApbA_C PF08546.11 gi|126180322|ref|YP_001048287.1| - 1.9e-30 105.7 0.0 2.7e-30 105.1 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|126180322|ref|YP_001048287.1| - 3.7e-22 78.6 0.2 5.6e-22 78.0 0.2 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FMN_red PF03358.15 gi|126180324|ref|YP_001048289.1| - 1.6e-06 27.9 0.0 2.1e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.7 gi|126180324|ref|YP_001048289.1| - 6.5e-06 26.4 0.0 0.0068 16.6 0.0 2.4 2 1 0 2 2 2 2 Flavodoxin domain Flavodoxin_4 PF12682.7 gi|126180324|ref|YP_001048289.1| - 0.0002 21.1 0.0 0.15 11.8 0.0 2.1 2 0 0 2 2 2 2 Flavodoxin Flavodoxin_1 PF00258.25 gi|126180324|ref|YP_001048289.1| - 0.0012 19.0 0.1 0.036 14.3 0.1 2.2 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_2 PF02525.17 gi|126180324|ref|YP_001048289.1| - 0.14 11.9 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin-like fold BofA PF07441.11 gi|126180325|ref|YP_001048290.1| - 5.2e-16 58.6 20.2 7.1e-16 58.2 20.2 1.2 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA LAX PF15681.5 gi|126180325|ref|YP_001048290.1| - 0.17 10.7 0.4 0.23 10.2 0.4 1.2 1 0 0 1 1 1 0 Lymphocyte activation family X 60KD_IMP PF02096.20 gi|126180325|ref|YP_001048290.1| - 0.19 11.6 3.6 0.24 11.3 3.4 1.3 1 1 0 1 1 1 0 60Kd inner membrane protein DUF3165 PF11364.8 gi|126180325|ref|YP_001048290.1| - 0.46 10.8 10.6 0.16 12.4 7.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3165) Presenilin PF01080.17 gi|126180325|ref|YP_001048290.1| - 1.1 7.9 7.4 1.2 7.8 7.4 1.1 1 0 0 1 1 1 0 Presenilin DUF1440 PF07274.12 gi|126180325|ref|YP_001048290.1| - 5.2 7.4 6.7 15 5.9 1.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1440) Transglut_core PF01841.19 gi|126180326|ref|YP_001048291.1| - 2.7e-05 24.6 0.0 3.6e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core3 PF13471.6 gi|126180326|ref|YP_001048291.1| - 0.0061 16.4 1.2 0.031 14.2 1.2 2.0 1 1 0 1 1 1 1 Transglutaminase-like superfamily Peptidase_C93 PF06035.11 gi|126180326|ref|YP_001048291.1| - 0.089 12.6 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial transglutaminase-like cysteine proteinase BTLCP HI0933_like PF03486.14 gi|126180327|ref|YP_001048292.1| - 1.5e-117 392.8 0.0 1.8e-117 392.5 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|126180327|ref|YP_001048292.1| - 7e-11 41.9 0.0 0.00015 21.1 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|126180327|ref|YP_001048292.1| - 1.3e-10 41.4 3.9 2e-05 24.4 0.1 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|126180327|ref|YP_001048292.1| - 1.8e-10 40.5 2.2 2e-07 30.4 0.0 3.1 3 1 0 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|126180327|ref|YP_001048292.1| - 1.5e-06 27.7 0.0 4.6e-06 26.1 0.0 1.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|126180327|ref|YP_001048292.1| - 7e-06 25.6 0.4 1e-05 25.1 0.4 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|126180327|ref|YP_001048292.1| - 2.3e-05 24.6 0.2 6.7e-05 23.0 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|126180327|ref|YP_001048292.1| - 0.00087 18.6 0.0 0.0026 17.0 0.0 1.7 1 1 0 1 1 1 1 FAD binding domain Amino_oxidase PF01593.24 gi|126180327|ref|YP_001048292.1| - 0.0009 18.6 0.0 0.12 11.7 0.0 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 gi|126180327|ref|YP_001048292.1| - 0.0022 18.0 0.6 1.4 8.9 0.1 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|126180327|ref|YP_001048292.1| - 0.0043 17.6 0.0 0.83 10.3 0.1 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|126180327|ref|YP_001048292.1| - 0.0083 15.2 0.4 0.0083 15.2 0.4 2.4 3 0 0 3 3 3 2 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|126180327|ref|YP_001048292.1| - 1.6 7.7 6.5 0.42 9.6 0.3 2.5 3 0 0 3 3 3 0 Lycopene cyclase protein DUF2341 PF10102.9 gi|126180328|ref|YP_001048293.1| - 1e-18 67.7 0.0 2.8e-18 66.3 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) Laminin_G_3 PF13385.6 gi|126180328|ref|YP_001048293.1| - 0.0003 21.0 0.6 0.00067 19.8 0.6 1.5 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily Polysacc_synt PF01943.17 gi|126180329|ref|YP_001048294.1| - 0.0026 17.2 34.3 0.0026 17.2 34.3 2.2 1 1 0 2 2 2 1 Polysaccharide biosynthesis protein DUF5533 PF17685.1 gi|126180329|ref|YP_001048294.1| - 2 8.8 13.9 0.15 12.5 5.0 2.8 2 0 0 2 2 2 0 Family of unknown function (DUF5533) Glycos_transf_1 PF00534.20 gi|126180331|ref|YP_001048296.1| - 6.1e-31 107.3 0.0 7.3e-29 100.5 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126180331|ref|YP_001048296.1| - 3.6e-28 98.7 0.2 1.3e-27 96.8 0.3 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|126180331|ref|YP_001048296.1| - 1e-24 87.5 0.0 6e-24 85.0 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|126180331|ref|YP_001048296.1| - 4.7e-18 66.1 0.0 9.3e-18 65.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|126180331|ref|YP_001048296.1| - 2.4e-05 24.7 0.0 9.8e-05 22.7 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|126180331|ref|YP_001048296.1| - 0.0037 17.0 0.1 0.033 13.9 0.0 2.5 2 1 0 2 2 2 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|126180331|ref|YP_001048296.1| - 0.025 14.6 0.1 0.072 13.1 0.1 1.7 1 1 0 1 1 1 0 Glycosyl transferase 4-like PS_pyruv_trans PF04230.13 gi|126180332|ref|YP_001048297.1| - 4.1e-64 217.3 0.0 4.9e-64 217.0 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase Radical_SAM PF04055.21 gi|126180333|ref|YP_001048298.1| - 2e-20 73.8 0.5 3.4e-20 73.1 0.5 1.4 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|126180333|ref|YP_001048298.1| - 1.3e-06 28.5 0.0 1.9e-05 24.7 0.0 2.8 4 0 0 4 4 4 1 B12 binding domain Fer4_14 PF13394.6 gi|126180333|ref|YP_001048298.1| - 0.049 13.8 2.6 0.17 12.0 2.0 2.2 2 1 0 2 2 2 0 4Fe-4S single cluster domain Glyco_tran_WecB PF03808.13 gi|126180333|ref|YP_001048298.1| - 0.099 12.6 0.0 29 4.6 0.0 3.1 2 1 1 3 3 3 0 Glycosyl transferase WecB/TagA/CpsF family DUF166 PF02593.14 gi|126180333|ref|YP_001048298.1| - 0.16 11.5 0.0 0.4 10.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function Glycos_transf_1 PF00534.20 gi|126180334|ref|YP_001048299.1| - 1.1e-20 73.8 0.0 1.9e-19 69.8 0.0 2.2 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126180334|ref|YP_001048299.1| - 8.7e-20 71.5 0.0 1.7e-19 70.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|126180334|ref|YP_001048299.1| - 2e-11 44.1 0.0 5.3e-11 42.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126180334|ref|YP_001048299.1| - 0.016 15.2 0.0 0.041 13.9 0.0 1.8 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Epimerase_2 PF02350.19 gi|126180335|ref|YP_001048300.1| - 7.6e-120 399.9 0.0 8.7e-120 399.7 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase MGDG_synth PF06925.11 gi|126180335|ref|YP_001048300.1| - 0.013 15.6 0.0 0.22 11.6 0.0 2.3 2 0 0 2 2 2 0 Monogalactosyldiacylglycerol (MGDG) synthase Glyco_transf_4 PF13439.6 gi|126180335|ref|YP_001048300.1| - 0.065 13.2 0.0 0.2 11.7 0.0 1.6 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|126180335|ref|YP_001048300.1| - 0.11 12.5 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glycos_transf_2 PF00535.26 gi|126180336|ref|YP_001048301.1| - 2.5e-21 76.2 0.0 3.5e-21 75.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|126180336|ref|YP_001048301.1| - 0.00033 20.6 0.0 0.00045 20.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|126180336|ref|YP_001048301.1| - 0.00053 20.4 0.1 0.068 13.7 0.0 2.7 2 1 1 3 3 3 1 Glycosyl transferase family 2 VirB3 PF05101.13 gi|126180336|ref|YP_001048301.1| - 0.022 15.0 2.9 0.041 14.1 2.9 1.4 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein Amastin PF07344.11 gi|126180336|ref|YP_001048301.1| - 0.21 11.4 0.7 0.32 10.8 0.7 1.2 1 0 0 1 1 1 0 Amastin surface glycoprotein COPI_assoc PF08507.10 gi|126180336|ref|YP_001048301.1| - 0.92 9.6 7.2 1.3 9.0 7.2 1.2 1 0 0 1 1 1 0 COPI associated protein PMT_4TMC PF16192.5 gi|126180338|ref|YP_001048303.1| - 0.29 10.7 3.2 0.33 10.5 3.2 1.0 1 0 0 1 1 1 0 C-terminal four TMM region of protein-O-mannosyltransferase CarboxypepD_reg PF13620.6 gi|126180339|ref|YP_001048304.1| - 8e-08 32.4 3.4 3.8e-05 23.9 0.2 3.7 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain Big_3_5 PF16640.5 gi|126180339|ref|YP_001048304.1| - 0.00021 21.4 1.3 0.021 15.0 0.2 2.9 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 3) CarbopepD_reg_2 PF13715.6 gi|126180339|ref|YP_001048304.1| - 0.0042 17.1 0.1 0.2 11.7 0.0 3.0 3 0 0 3 3 3 1 CarboxypepD_reg-like domain DUF4129 PF13559.6 gi|126180339|ref|YP_001048304.1| - 0.016 15.5 0.3 0.016 15.5 0.3 3.0 4 1 0 4 4 4 0 Domain of unknown function (DUF4129) SdrD_B PF17210.3 gi|126180339|ref|YP_001048304.1| - 0.026 14.7 0.0 0.07 13.4 0.0 1.6 1 0 0 1 1 1 0 SdrD B-like domain DUF4350 PF14258.6 gi|126180340|ref|YP_001048305.1| - 0.00097 19.5 0.1 0.0058 17.0 0.0 2.2 2 1 0 2 2 2 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|126180340|ref|YP_001048305.1| - 0.14 11.6 0.0 0.2 11.1 0.0 1.1 1 0 0 1 1 1 0 ABC-type uncharacterized transport system AAA_3 PF07726.11 gi|126180341|ref|YP_001048306.1| - 1.6e-54 183.2 0.1 3.2e-54 182.3 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|126180341|ref|YP_001048306.1| - 1.3e-20 73.0 1.8 2.7e-20 72.0 1.8 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|126180341|ref|YP_001048306.1| - 2.3e-13 50.3 0.0 5e-13 49.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|126180341|ref|YP_001048306.1| - 1.1e-07 31.2 0.0 1.6e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|126180341|ref|YP_001048306.1| - 5.1e-07 29.6 0.0 2.4e-06 27.4 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|126180341|ref|YP_001048306.1| - 3.6e-06 27.4 0.0 9.2e-06 26.1 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|126180341|ref|YP_001048306.1| - 0.0051 17.2 0.0 5 7.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|126180341|ref|YP_001048306.1| - 0.0053 16.5 0.0 0.12 12.0 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_30 PF13604.6 gi|126180341|ref|YP_001048306.1| - 0.0054 16.5 0.1 0.035 13.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|126180341|ref|YP_001048306.1| - 0.0066 15.9 0.1 0.4 10.0 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.15 gi|126180341|ref|YP_001048306.1| - 0.021 14.7 0.0 0.22 11.4 0.0 2.3 2 0 0 2 2 2 0 NTPase AAA_22 PF13401.6 gi|126180341|ref|YP_001048306.1| - 0.069 13.4 0.1 6.2 7.1 0.1 2.4 1 1 1 2 2 2 0 AAA domain DUF58 PF01882.18 gi|126180342|ref|YP_001048307.1| - 2.9e-13 49.9 0.0 5.8e-13 48.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|126180342|ref|YP_001048307.1| - 0.057 13.7 0.0 0.13 12.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF11 COX8 PF02285.15 gi|126180342|ref|YP_001048307.1| - 0.19 11.6 1.8 0.34 10.8 1.0 1.8 2 0 0 2 2 2 0 Cytochrome oxidase c subunit VIII UL20 PF17582.2 gi|126180343|ref|YP_001048308.1| - 0.17 11.2 0.8 0.18 11.0 0.8 1.1 1 0 0 1 1 1 0 Cytomegalovirus UL20 MerC PF03203.14 gi|126180344|ref|YP_001048309.1| - 0.004 17.6 3.0 1.3 9.6 0.9 2.2 2 0 0 2 2 2 2 MerC mercury resistance protein SLATT_fungal PF18142.1 gi|126180344|ref|YP_001048309.1| - 0.079 13.0 1.3 0.22 11.5 1.3 1.7 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain DUF1616 PF07760.11 gi|126180345|ref|YP_001048310.1| - 2.3e-109 365.3 1.5 2.7e-109 365.1 1.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) CPBP PF02517.16 gi|126180345|ref|YP_001048310.1| - 4.8 7.6 6.5 4 7.9 4.7 1.7 2 0 0 2 2 2 0 CPBP intramembrane metalloprotease Invasin_D3 PF09134.10 gi|126180346|ref|YP_001048311.1| - 3.2 8.1 10.0 2.5 8.5 5.3 2.9 2 1 0 2 2 2 0 Invasin, domain 3 UbiA PF01040.18 gi|126180348|ref|YP_001048313.1| - 3.6e-25 88.7 32.3 3.6e-25 88.7 32.3 1.4 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF1294 PF06961.13 gi|126180350|ref|YP_001048315.1| - 9.2e-22 77.0 0.1 1.5e-21 76.4 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) Fe_dep_repress PF01325.19 gi|126180351|ref|YP_001048316.1| - 5.3e-19 68.2 0.1 8e-19 67.6 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|126180351|ref|YP_001048316.1| - 6.9e-14 51.7 0.5 4.1e-13 49.2 0.1 2.2 2 1 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain TrmB PF01978.19 gi|126180351|ref|YP_001048316.1| - 0.0002 21.2 0.0 0.00054 19.8 0.0 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|126180351|ref|YP_001048316.1| - 0.0014 18.5 0.0 0.0026 17.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|126180351|ref|YP_001048316.1| - 0.0015 18.3 0.1 0.0096 15.6 0.0 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 gi|126180351|ref|YP_001048316.1| - 0.0035 17.7 0.0 0.0063 16.8 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 gi|126180351|ref|YP_001048316.1| - 0.0044 16.9 0.0 0.02 14.8 0.0 2.0 2 0 0 2 2 2 1 MarR family LexA_DNA_bind PF01726.16 gi|126180351|ref|YP_001048316.1| - 0.0051 16.6 0.0 9 6.2 0.0 3.0 3 0 0 3 3 3 1 LexA DNA binding domain HrcA_DNA-bdg PF03444.15 gi|126180351|ref|YP_001048316.1| - 0.01 15.5 0.0 0.046 13.4 0.0 2.0 1 1 1 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_24 PF13412.6 gi|126180351|ref|YP_001048316.1| - 0.017 14.7 0.0 0.18 11.4 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|126180351|ref|YP_001048316.1| - 0.019 14.8 0.0 0.042 13.7 0.0 1.6 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_27 PF13463.6 gi|126180351|ref|YP_001048316.1| - 0.022 15.2 0.1 0.072 13.6 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain FeoC PF09012.10 gi|126180351|ref|YP_001048316.1| - 0.023 14.8 0.0 0.053 13.6 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF2250 PF10007.9 gi|126180351|ref|YP_001048316.1| - 0.038 14.1 0.0 0.065 13.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.6 gi|126180351|ref|YP_001048316.1| - 0.043 13.8 0.0 0.072 13.1 0.0 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.22 gi|126180351|ref|YP_001048316.1| - 0.057 13.3 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 MarR family Sigma70_r3 PF04539.16 gi|126180351|ref|YP_001048316.1| - 0.084 13.0 0.0 24 5.1 0.0 2.5 2 1 0 2 2 2 0 Sigma-70 region 3 HTH_6 PF01418.17 gi|126180351|ref|YP_001048316.1| - 0.16 11.9 0.0 0.37 10.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family FmdE PF02663.14 gi|126180352|ref|YP_001048317.1| - 0.19 11.8 0.0 0.24 11.4 0.0 1.2 1 0 0 1 1 1 0 FmdE, Molybdenum formylmethanofuran dehydrogenase operon FeoA PF04023.14 gi|126180354|ref|YP_001048319.1| - 8.5e-12 45.2 0.9 9.8e-12 45.0 0.9 1.1 1 0 0 1 1 1 1 FeoA domain FeoA PF04023.14 gi|126180355|ref|YP_001048320.1| - 1.8e-12 47.3 0.2 2e-12 47.2 0.2 1.0 1 0 0 1 1 1 1 FeoA domain UbiA PF01040.18 gi|126180357|ref|YP_001048322.1| - 5.1e-28 98.0 19.2 6.8e-28 97.6 19.2 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Phage_holin_3_2 PF04550.12 gi|126180357|ref|YP_001048322.1| - 3.4 8.3 7.1 1.3 9.6 2.8 2.5 3 0 0 3 3 3 0 Phage holin family 2 Cupredoxin_1 PF13473.6 gi|126180358|ref|YP_001048323.1| - 5.7e-12 45.7 0.0 8.5e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|126180358|ref|YP_001048323.1| - 1e-06 29.1 0.0 1.6e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cu-oxidase_2 PF07731.14 gi|126180358|ref|YP_001048323.1| - 0.026 14.3 0.1 2.4 7.9 0.0 2.2 2 0 0 2 2 2 0 Multicopper oxidase SoxE PF06525.11 gi|126180358|ref|YP_001048323.1| - 0.028 13.9 0.0 0.057 12.9 0.0 1.5 1 1 0 1 1 1 0 Sulfocyanin (SoxE) domain fn3_5 PF06280.12 gi|126180358|ref|YP_001048323.1| - 0.13 13.0 0.0 0.17 12.6 0.0 1.3 1 0 0 1 1 1 0 Fn3-like domain Como_LCP PF02247.16 gi|126180358|ref|YP_001048323.1| - 0.15 10.7 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 Large coat protein GSDH PF07995.11 gi|126180359|ref|YP_001048324.1| - 2.6e-32 112.4 0.0 1.5e-15 57.3 0.0 2.2 1 1 1 2 2 2 2 Glucose / Sorbosone dehydrogenase Cupredoxin_1 PF13473.6 gi|126180359|ref|YP_001048324.1| - 3.8e-09 36.6 0.1 8.1e-09 35.5 0.1 1.5 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|126180359|ref|YP_001048324.1| - 1.4e-07 31.8 0.1 3.7e-07 30.5 0.1 1.7 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cu-oxidase_2 PF07731.14 gi|126180359|ref|YP_001048324.1| - 0.059 13.1 0.2 3.1 7.6 0.2 2.6 2 1 0 2 2 2 0 Multicopper oxidase DUF2298 PF10060.9 gi|126180360|ref|YP_001048325.1| - 1.1e-73 248.7 43.8 1.1e-73 248.7 43.8 2.5 2 1 0 2 2 2 1 Uncharacterized membrane protein (DUF2298) NIR_SIR PF01077.22 gi|126180361|ref|YP_001048326.1| - 1.7e-26 92.6 0.0 2.6e-26 92.0 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|126180361|ref|YP_001048326.1| - 1.8e-13 50.1 0.1 3.9e-13 49.0 0.1 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|126180361|ref|YP_001048326.1| - 9.9e-09 34.7 23.5 1.2e-05 24.9 4.7 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126180361|ref|YP_001048326.1| - 8.6e-07 29.0 11.8 8.6e-07 29.0 11.8 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126180361|ref|YP_001048326.1| - 2e-06 27.6 2.3 2e-06 27.6 2.3 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126180361|ref|YP_001048326.1| - 2.4e-06 28.0 22.6 1.2e-05 25.8 12.3 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126180361|ref|YP_001048326.1| - 5.7e-06 26.4 12.3 0.00058 19.9 0.0 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126180361|ref|YP_001048326.1| - 0.00015 21.8 12.3 0.00015 21.8 12.3 2.8 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126180361|ref|YP_001048326.1| - 0.00018 22.4 12.7 0.0087 17.0 1.4 2.8 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|126180361|ref|YP_001048326.1| - 0.00028 20.8 1.5 0.00028 20.8 1.5 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|126180361|ref|YP_001048326.1| - 0.0027 18.5 8.9 0.061 14.2 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126180361|ref|YP_001048326.1| - 0.0072 16.7 1.0 0.0072 16.7 1.0 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|126180361|ref|YP_001048326.1| - 0.044 14.2 14.1 0.14 12.7 0.1 2.7 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126180361|ref|YP_001048326.1| - 0.055 14.4 5.5 0.055 14.4 5.5 3.6 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|126180361|ref|YP_001048326.1| - 0.17 12.1 5.6 0.45 10.7 5.6 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126180361|ref|YP_001048326.1| - 0.77 10.3 16.5 1.1 9.9 1.3 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|126180361|ref|YP_001048326.1| - 9.2 7.1 18.7 0.91 10.3 2.0 3.3 3 1 1 4 4 4 0 4Fe-4S single cluster domain zinc_ribbon_6 PF14599.6 gi|126180363|ref|YP_001048328.1| - 0.0031 17.5 3.7 0.2 11.7 4.9 2.1 1 1 1 2 2 2 2 Zinc-ribbon OrfB_Zn_ribbon PF07282.11 gi|126180363|ref|YP_001048328.1| - 0.025 14.5 1.4 0.028 14.4 1.4 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Molybdop_Fe4S4 PF04879.16 gi|126180363|ref|YP_001048328.1| - 0.025 14.5 2.5 0.033 14.2 2.5 1.2 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain CbiA PF01656.23 gi|126180364|ref|YP_001048329.1| - 3.2e-16 59.5 0.0 4.1e-16 59.2 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|126180364|ref|YP_001048329.1| - 2.5e-12 46.8 0.0 2.4e-06 27.2 0.0 2.8 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|126180364|ref|YP_001048329.1| - 4.1e-12 45.4 13.7 5e-06 26.1 3.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126180364|ref|YP_001048329.1| - 1.4e-08 34.7 8.9 3.1e-08 33.6 8.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126180364|ref|YP_001048329.1| - 8.3e-08 32.7 21.5 6.6e-06 26.6 13.6 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126180364|ref|YP_001048329.1| - 6.5e-07 30.2 8.3 0.001 20.0 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|126180364|ref|YP_001048329.1| - 2.9e-06 27.1 16.6 0.00023 21.1 4.2 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|126180364|ref|YP_001048329.1| - 5.3e-06 26.2 15.5 0.0068 16.4 3.6 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126180364|ref|YP_001048329.1| - 2.7e-05 24.3 11.8 0.00026 21.1 12.4 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|126180364|ref|YP_001048329.1| - 9.9e-05 22.3 0.0 0.16 11.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain Fer4_10 PF13237.6 gi|126180364|ref|YP_001048329.1| - 0.00098 19.2 13.7 0.0035 17.4 13.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain ArsA_ATPase PF02374.15 gi|126180364|ref|YP_001048329.1| - 0.0044 16.2 0.7 0.031 13.5 0.3 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_30 PF13604.6 gi|126180364|ref|YP_001048329.1| - 0.012 15.4 0.1 1.3 8.7 0.1 2.4 2 0 0 2 2 2 0 AAA domain Herpeto_peptide PF14409.6 gi|126180364|ref|YP_001048329.1| - 0.017 15.3 0.0 0.04 14.2 0.0 1.5 1 0 0 1 1 1 0 Ribosomally synthesized peptide in Herpetosiphon AAA_26 PF13500.6 gi|126180364|ref|YP_001048329.1| - 0.029 14.2 0.1 0.61 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain Fer4_4 PF12800.7 gi|126180364|ref|YP_001048329.1| - 0.036 14.6 17.2 0.26 11.9 3.1 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain AAA_16 PF13191.6 gi|126180364|ref|YP_001048329.1| - 0.079 13.3 0.0 0.19 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|126180364|ref|YP_001048329.1| - 0.1 12.0 0.1 3.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|126180364|ref|YP_001048329.1| - 0.13 12.7 0.2 0.33 11.4 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|126180364|ref|YP_001048329.1| - 0.14 11.6 0.5 1.1 8.6 0.2 2.0 2 0 0 2 2 2 0 PhoH-like protein NACHT PF05729.12 gi|126180364|ref|YP_001048329.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain FTHFS PF01268.19 gi|126180364|ref|YP_001048329.1| - 0.15 10.3 0.0 0.24 9.5 0.0 1.3 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase Fer4_15 PF13459.6 gi|126180364|ref|YP_001048329.1| - 0.22 12.3 10.3 0.85 10.4 0.8 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|126180364|ref|YP_001048329.1| - 0.32 11.6 13.1 1.7 9.2 2.1 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126180364|ref|YP_001048329.1| - 1.5 9.3 14.4 15 6.1 4.6 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain CbiA PF01656.23 gi|126180365|ref|YP_001048330.1| - 5.5e-22 78.2 0.0 1e-21 77.3 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|126180365|ref|YP_001048330.1| - 1.5e-11 44.2 0.0 4.6e-10 39.4 0.0 2.6 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|126180365|ref|YP_001048330.1| - 1.3e-09 37.5 13.3 2.8e-05 23.7 0.9 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_NifH PF00142.18 gi|126180365|ref|YP_001048330.1| - 8.4e-07 28.7 0.0 0.0053 16.2 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_6 PF12837.7 gi|126180365|ref|YP_001048330.1| - 1.4e-06 28.2 13.7 0.0015 18.5 0.7 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain AAA_31 PF13614.6 gi|126180365|ref|YP_001048330.1| - 3.2e-06 27.2 0.1 0.00018 21.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain Fer4_7 PF12838.7 gi|126180365|ref|YP_001048330.1| - 5e-06 27.0 9.9 0.022 15.4 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126180365|ref|YP_001048330.1| - 2.5e-05 24.3 3.9 2.5e-05 24.3 3.9 2.1 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126180365|ref|YP_001048330.1| - 5.3e-05 23.3 10.2 0.00018 21.6 7.4 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain ArsA_ATPase PF02374.15 gi|126180365|ref|YP_001048330.1| - 0.00052 19.3 0.5 0.00076 18.8 0.5 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.11 gi|126180365|ref|YP_001048330.1| - 0.0011 18.3 0.0 0.0018 17.6 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ Fer4_16 PF13484.6 gi|126180365|ref|YP_001048330.1| - 0.0037 18.2 8.0 0.086 13.8 2.8 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain CLP1_P PF16575.5 gi|126180365|ref|YP_001048330.1| - 0.0038 17.0 0.0 0.0061 16.4 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop Fer4_10 PF13237.6 gi|126180365|ref|YP_001048330.1| - 0.0045 17.1 13.9 0.014 15.5 11.0 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain AAA_25 PF13481.6 gi|126180365|ref|YP_001048330.1| - 0.029 14.0 0.0 0.059 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Fer4_2 PF12797.7 gi|126180365|ref|YP_001048330.1| - 0.036 14.2 16.9 0.14 12.3 2.5 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain CBP_BcsQ PF06564.12 gi|126180365|ref|YP_001048330.1| - 0.059 12.8 0.0 0.16 11.4 0.0 1.6 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ Fer4_5 PF12801.7 gi|126180365|ref|YP_001048330.1| - 0.073 13.0 0.8 0.49 10.4 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|126180365|ref|YP_001048330.1| - 0.081 13.5 1.1 0.081 13.5 1.1 2.6 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126180365|ref|YP_001048330.1| - 5.3 7.6 15.8 1 9.9 2.8 2.8 1 1 0 2 2 2 0 4Fe-4S dicluster domain Nitro_FeMo-Co PF02579.17 gi|126180366|ref|YP_001048331.1| - 4.4e-22 78.2 0.1 4.9e-22 78.1 0.1 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.17 gi|126180367|ref|YP_001048332.1| - 1.9e-21 76.2 0.0 2.5e-21 75.8 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor AAA_32 PF13654.6 gi|126180368|ref|YP_001048333.1| - 8.8e-198 658.2 0.6 1.1e-197 658.0 0.6 1.1 1 0 0 1 1 1 1 AAA domain Lon_C PF05362.13 gi|126180368|ref|YP_001048333.1| - 1.3e-07 31.3 0.2 3.2e-07 30.1 0.1 1.7 2 0 0 2 2 2 1 Lon protease (S16) C-terminal proteolytic domain CHAD PF05235.14 gi|126180368|ref|YP_001048333.1| - 0.024 14.6 1.1 0.059 13.3 1.1 1.6 1 0 0 1 1 1 0 CHAD domain Aminotran_5 PF00266.19 gi|126180369|ref|YP_001048334.1| - 2e-85 287.0 0.0 2.4e-85 286.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|126180369|ref|YP_001048334.1| - 2.8e-10 40.0 0.0 3.3e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|126180369|ref|YP_001048334.1| - 3.8e-07 29.8 1.2 5.4e-07 29.2 1.2 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|126180369|ref|YP_001048334.1| - 2.1e-05 23.2 0.0 3e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme GDC-P PF02347.16 gi|126180369|ref|YP_001048334.1| - 0.11 11.3 0.1 0.16 10.8 0.1 1.2 1 0 0 1 1 1 0 Glycine cleavage system P-protein PGM_PMM_I PF02878.16 gi|126180370|ref|YP_001048335.1| - 8.9e-32 109.7 0.0 2e-31 108.5 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|126180370|ref|YP_001048335.1| - 1.3e-22 80.1 0.0 3.2e-22 78.9 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|126180370|ref|YP_001048335.1| - 2.5e-21 76.2 0.0 4.3e-21 75.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|126180370|ref|YP_001048335.1| - 1.1e-10 41.5 1.0 2.9e-10 40.2 0.2 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATP-cone PF03477.16 gi|126180371|ref|YP_001048336.1| - 6.9e-12 45.8 0.4 7.4e-12 45.7 0.4 1.1 1 0 0 1 1 1 1 ATP cone domain DUF4378 PF14309.6 gi|126180371|ref|YP_001048336.1| - 0.006 17.0 1.2 0.0064 16.9 1.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4378) FYRC PF05965.14 gi|126180371|ref|YP_001048336.1| - 0.046 13.9 0.1 0.062 13.5 0.0 1.3 1 1 0 1 1 1 0 F/Y rich C-terminus Endonuc_Holl PF10107.9 gi|126180372|ref|YP_001048337.1| - 5e-71 237.7 0.6 6.1e-71 237.5 0.6 1.0 1 0 0 1 1 1 1 Endonuclease related to archaeal Holliday junction resolvase DUF1819 PF08849.11 gi|126180372|ref|YP_001048337.1| - 0.0054 16.6 1.0 0.008 16.0 1.0 1.3 1 0 0 1 1 1 1 Putative inner membrane protein (DUF1819) DUF4263 PF14082.6 gi|126180372|ref|YP_001048337.1| - 0.025 14.9 0.0 0.04 14.2 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4263) Ca_hom_mod PF14798.6 gi|126180372|ref|YP_001048337.1| - 0.35 10.0 0.9 0.46 9.6 0.9 1.2 1 0 0 1 1 1 0 Calcium homeostasis modulator DUF134 PF02001.16 gi|126180373|ref|YP_001048338.1| - 4e-22 78.6 0.0 4.9e-22 78.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_ECF PF07638.11 gi|126180373|ref|YP_001048338.1| - 1.2e-06 28.5 0.0 1.9e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 ECF sigma factor Sigma70_r4_2 PF08281.12 gi|126180373|ref|YP_001048338.1| - 1.8e-06 27.5 0.0 2.8e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|126180373|ref|YP_001048338.1| - 2.4e-05 24.0 0.2 6.5e-05 22.6 0.1 1.7 1 1 1 2 2 2 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|126180373|ref|YP_001048338.1| - 0.0011 18.4 0.1 0.0019 17.7 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_17 PF12728.7 gi|126180373|ref|YP_001048338.1| - 0.0027 17.9 0.0 0.11 12.7 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_1 PF00126.27 gi|126180373|ref|YP_001048338.1| - 0.0028 17.6 0.2 0.0038 17.2 0.2 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_3 PF01381.22 gi|126180373|ref|YP_001048338.1| - 0.0036 17.3 0.1 0.0061 16.6 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_8 PF02954.19 gi|126180373|ref|YP_001048338.1| - 0.0037 17.0 0.0 0.0082 15.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_31 PF13560.6 gi|126180373|ref|YP_001048338.1| - 0.0076 16.6 2.8 0.015 15.6 2.8 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|126180373|ref|YP_001048338.1| - 0.012 15.5 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 HTH domain HTH_29 PF13551.6 gi|126180373|ref|YP_001048338.1| - 0.013 15.5 0.3 0.013 15.5 0.3 2.1 2 1 0 2 2 2 0 Winged helix-turn helix HTH_DeoR PF08220.12 gi|126180373|ref|YP_001048338.1| - 0.032 14.0 0.0 0.05 13.4 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF4530 PF15039.6 gi|126180373|ref|YP_001048338.1| - 0.06 13.5 0.0 0.074 13.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4530) HTH_28 PF13518.6 gi|126180373|ref|YP_001048338.1| - 0.1 12.8 0.3 0.1 12.8 0.3 2.2 2 1 0 2 2 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|126180373|ref|YP_001048338.1| - 0.11 12.5 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|126180373|ref|YP_001048338.1| - 0.16 11.8 0.0 0.24 11.2 0.0 1.2 1 0 0 1 1 1 0 HTH DNA binding domain Sulfate_transp PF00916.20 gi|126180374|ref|YP_001048339.1| - 1.1e-59 202.1 23.8 1.4e-59 201.7 23.8 1.1 1 0 0 1 1 1 1 Sulfate permease family HCO3_cotransp PF00955.21 gi|126180374|ref|YP_001048339.1| - 0.0024 16.8 0.1 0.0043 15.9 0.1 1.3 1 0 0 1 1 1 1 HCO3- transporter family AI-2E_transport PF01594.16 gi|126180375|ref|YP_001048340.1| - 4.8e-46 157.4 34.2 7.8e-46 156.7 34.2 1.3 1 1 0 1 1 1 1 AI-2E family transporter DUF2238 PF09997.9 gi|126180376|ref|YP_001048341.1| - 6.6e-05 22.7 8.7 0.00033 20.5 7.5 2.3 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) SpoIIAA-like PF11964.8 gi|126180377|ref|YP_001048342.1| - 6.1e-16 59.3 0.0 6.9e-16 59.1 0.0 1.0 1 0 0 1 1 1 1 SpoIIAA-like Enoyl_reductase PF12241.8 gi|126180377|ref|YP_001048342.1| - 0.22 10.8 0.1 0.3 10.4 0.1 1.1 1 0 0 1 1 1 0 Trans-2-enoyl-CoA reductase catalytic region PHP_C PF13263.6 gi|126180378|ref|YP_001048343.1| - 2.2e-12 46.5 0.9 8.8e-12 44.6 0.3 2.1 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|126180378|ref|YP_001048343.1| - 7.7e-05 23.1 0.0 0.00012 22.4 0.0 1.4 1 0 0 1 1 1 1 PHP domain PLDc_2 PF13091.6 gi|126180379|ref|YP_001048344.1| - 5.7e-44 149.2 0.0 1.3e-27 96.3 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|126180379|ref|YP_001048344.1| - 6.3e-13 48.3 5.6 7e-06 26.0 0.9 2.6 2 0 0 2 2 2 2 Phospholipase D Active site motif PLDc_N PF13396.6 gi|126180379|ref|YP_001048344.1| - 3.9e-12 45.9 2.5 7.5e-12 45.0 2.5 1.5 1 0 0 1 1 1 1 Phospholipase_D-nuclease N-terminal SpoIIAA-like PF11964.8 gi|126180380|ref|YP_001048345.1| - 1.2e-18 68.0 0.0 1.3e-18 67.8 0.0 1.0 1 0 0 1 1 1 1 SpoIIAA-like Enoyl_reductase PF12241.8 gi|126180380|ref|YP_001048345.1| - 0.18 11.1 0.1 0.24 10.7 0.1 1.1 1 0 0 1 1 1 0 Trans-2-enoyl-CoA reductase catalytic region zinc_ribbon_9 PF14369.6 gi|126180381|ref|YP_001048346.1| - 0.17 12.1 0.3 0.17 12.1 0.3 2.8 3 0 0 3 3 3 0 zinc-ribbon TF_Zn_Ribbon PF08271.12 gi|126180381|ref|YP_001048346.1| - 0.32 10.5 7.7 1.4 8.5 2.6 3.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf-FPG_IleRS PF06827.14 gi|126180381|ref|YP_001048346.1| - 0.64 9.9 0.0 0.64 9.9 0.0 2.7 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS Lar_restr_allev PF14354.6 gi|126180381|ref|YP_001048346.1| - 5.3 7.5 7.2 37 4.8 1.9 2.7 2 0 0 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.6 gi|126180381|ref|YP_001048346.1| - 5.3 6.9 8.9 5.6 6.8 0.2 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Ldh_1_N PF00056.23 gi|126180382|ref|YP_001048347.1| - 1.1e-30 106.5 0.0 1.6e-30 106.1 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|126180382|ref|YP_001048347.1| - 2.4e-22 79.6 0.0 3.5e-22 79.1 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.16 gi|126180382|ref|YP_001048347.1| - 0.027 14.0 0.0 0.056 13.0 0.0 1.5 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase Semialdhyde_dh PF01118.24 gi|126180382|ref|YP_001048347.1| - 0.046 14.2 0.0 0.092 13.2 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Glyco_hydro_4C PF11975.8 gi|126180382|ref|YP_001048347.1| - 0.16 12.0 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase C-terminal domain EF1_GNE PF00736.19 gi|126180383|ref|YP_001048348.1| - 1.1e-15 57.6 0.5 1.2e-15 57.4 0.5 1.1 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.11 gi|126180384|ref|YP_001048349.1| - 3e-08 33.5 10.9 5.1e-06 26.3 6.4 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DUF1272 PF06906.11 gi|126180384|ref|YP_001048349.1| - 1.9e-05 24.6 9.1 2.5e-05 24.3 9.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) C1_2 PF03107.16 gi|126180384|ref|YP_001048349.1| - 0.068 13.5 12.8 0.23 11.8 6.7 2.8 1 1 1 2 2 2 0 C1 domain zf-RING_4 PF14570.6 gi|126180384|ref|YP_001048349.1| - 0.16 11.8 9.9 0.21 11.4 9.9 1.3 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain PhnA_Zn_Ribbon PF08274.12 gi|126180384|ref|YP_001048349.1| - 0.18 11.8 11.7 0.16 11.9 2.9 2.7 2 2 0 2 2 2 0 PhnA Zinc-Ribbon C1_1 PF00130.22 gi|126180384|ref|YP_001048349.1| - 0.19 11.6 10.3 0.15 12.0 0.9 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf_C2H2_10 PF18414.1 gi|126180384|ref|YP_001048349.1| - 0.23 11.1 0.5 0.23 11.1 0.5 3.0 4 0 0 4 4 4 0 C2H2 type zinc-finger zf-CHY PF05495.12 gi|126180384|ref|YP_001048349.1| - 0.23 12.0 11.2 4.1 8.0 11.4 2.3 1 1 0 1 1 1 0 CHY zinc finger zf-Mss51 PF13824.6 gi|126180384|ref|YP_001048349.1| - 0.25 11.5 9.5 0.69 10.1 9.5 1.8 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Nudix_N_2 PF14803.6 gi|126180384|ref|YP_001048349.1| - 0.3 11.0 11.8 4.3 7.4 0.3 2.5 2 1 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|126180384|ref|YP_001048349.1| - 0.38 10.5 15.0 0.54 10.1 1.2 3.4 3 1 0 3 3 3 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|126180384|ref|YP_001048349.1| - 0.53 9.9 11.8 1.4 8.5 0.2 3.7 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger OrfB_Zn_ribbon PF07282.11 gi|126180384|ref|YP_001048349.1| - 0.76 9.8 10.8 0.29 11.1 5.5 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain NRDD PF13597.6 gi|126180384|ref|YP_001048349.1| - 0.88 8.3 10.4 0.35 9.6 3.3 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-ribbon_3 PF13248.6 gi|126180384|ref|YP_001048349.1| - 1.6 8.2 14.3 1.7 8.2 0.9 3.4 3 1 0 3 3 3 0 zinc-ribbon domain zf-ACC PF17848.1 gi|126180384|ref|YP_001048349.1| - 2.1 8.5 14.2 3.5 7.8 0.1 3.7 3 1 1 4 4 4 0 Acetyl-coA carboxylase zinc finger domain HypA PF01155.19 gi|126180384|ref|YP_001048349.1| - 4.7 7.3 11.8 2.3e+02 1.8 11.8 2.0 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PolC_DP2 PF03833.13 gi|126180384|ref|YP_001048349.1| - 5.4 4.8 7.1 5.8 4.6 7.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Dynactin_p62 PF05502.13 gi|126180384|ref|YP_001048349.1| - 7.9 5.1 9.7 1.7 7.4 1.7 1.9 1 1 1 2 2 2 0 Dynactin p62 family AA_kinase PF00696.28 gi|126180385|ref|YP_001048350.1| - 1e-12 48.2 0.0 2.9e-06 27.1 0.0 2.2 1 1 1 2 2 2 2 Amino acid kinase family PLDc_2 PF13091.6 gi|126180386|ref|YP_001048351.1| - 1.5e-38 131.6 0.0 8.2e-21 74.3 0.0 2.1 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|126180386|ref|YP_001048351.1| - 1.3e-05 25.2 1.0 0.073 13.3 0.7 2.4 2 0 0 2 2 2 2 Phospholipase D Active site motif Regulator_TrmB PF11495.8 gi|126180386|ref|YP_001048351.1| - 5.6e-05 22.4 0.0 0.4 9.8 0.0 2.5 2 1 0 2 2 2 2 Archaeal transcriptional regulator TrmB FAM83 PF07894.12 gi|126180386|ref|YP_001048351.1| - 0.07 12.7 0.0 3 7.3 0.0 3.0 4 0 0 4 4 4 0 FAM83 A-H LTD PF00932.19 gi|126180386|ref|YP_001048351.1| - 0.11 12.9 0.0 0.31 11.4 0.0 1.9 1 0 0 1 1 1 0 Lamin Tail Domain Sugarporin_N PF11471.8 gi|126180386|ref|YP_001048351.1| - 2 8.5 4.4 0.51 10.3 0.5 2.0 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension HTH_3 PF01381.22 gi|126180387|ref|YP_001048352.1| - 2.8e-07 30.5 0.2 4.4e-07 29.8 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|126180387|ref|YP_001048352.1| - 1.3e-06 28.0 0.1 5.6e-06 26.0 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_37 PF13744.6 gi|126180387|ref|YP_001048352.1| - 0.00019 21.3 0.0 0.00024 21.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|126180387|ref|YP_001048352.1| - 0.00019 20.9 0.2 0.0003 20.3 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_31 PF13560.6 gi|126180387|ref|YP_001048352.1| - 0.00023 21.4 0.5 0.00036 20.8 0.5 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|126180387|ref|YP_001048352.1| - 0.00024 20.5 0.7 0.00039 19.9 0.7 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_19 PF12844.7 gi|126180387|ref|YP_001048352.1| - 0.00091 19.2 0.2 0.0014 18.6 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|126180387|ref|YP_001048352.1| - 0.0012 18.9 0.1 0.0037 17.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|126180387|ref|YP_001048352.1| - 0.013 15.5 0.1 0.021 14.7 0.1 1.3 1 0 0 1 1 1 0 HTH domain SNRNP27 PF08648.12 gi|126180387|ref|YP_001048352.1| - 0.014 15.4 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 U4/U6.U5 small nuclear ribonucleoproteins DUF134 PF02001.16 gi|126180387|ref|YP_001048352.1| - 0.02 15.5 0.0 0.026 15.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF134 UPF0175 PF03683.13 gi|126180387|ref|YP_001048352.1| - 0.02 14.6 0.1 0.028 14.1 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) Sigma70_r4_2 PF08281.12 gi|126180387|ref|YP_001048352.1| - 0.022 14.4 0.3 0.033 13.9 0.3 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|126180387|ref|YP_001048352.1| - 0.024 14.5 0.1 0.041 13.8 0.1 1.5 1 0 0 1 1 1 0 MarR family HNF-1_N PF04814.13 gi|126180387|ref|YP_001048352.1| - 0.031 14.9 0.0 0.039 14.6 0.0 1.1 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus AraC_N PF06719.13 gi|126180387|ref|YP_001048352.1| - 0.031 13.9 0.0 7.2 6.3 0.0 2.1 2 0 0 2 2 2 0 AraC-type transcriptional regulator N-terminus HTH_1 PF00126.27 gi|126180387|ref|YP_001048352.1| - 0.034 14.1 0.1 0.055 13.4 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family KORA PF16509.5 gi|126180387|ref|YP_001048352.1| - 0.048 13.9 0.0 0.06 13.6 0.0 1.2 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_26 PF13443.6 gi|126180387|ref|YP_001048352.1| - 0.061 13.8 1.4 0.066 13.7 0.0 1.8 2 0 0 2 2 1 0 Cro/C1-type HTH DNA-binding domain HTH_29 PF13551.6 gi|126180387|ref|YP_001048352.1| - 0.067 13.2 0.4 0.67 10.0 0.1 2.2 2 0 0 2 2 2 0 Winged helix-turn helix HTH_17 PF12728.7 gi|126180387|ref|YP_001048352.1| - 0.069 13.3 0.9 0.64 10.2 0.1 2.5 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_8 PF02954.19 gi|126180387|ref|YP_001048352.1| - 0.077 12.8 0.5 0.15 11.9 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Linker_histone PF00538.19 gi|126180387|ref|YP_001048352.1| - 0.14 12.6 0.0 0.18 12.2 0.0 1.2 1 0 0 1 1 1 0 linker histone H1 and H5 family HTH_10 PF04967.12 gi|126180387|ref|YP_001048352.1| - 0.15 11.9 0.1 0.26 11.1 0.1 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_24 PF13412.6 gi|126180388|ref|YP_001048353.1| - 1.2e-06 27.9 0.0 1.7e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|126180388|ref|YP_001048353.1| - 0.00067 19.7 0.1 0.00088 19.3 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|126180388|ref|YP_001048353.1| - 0.0026 17.6 0.0 0.0031 17.4 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|126180388|ref|YP_001048353.1| - 0.009 15.9 0.1 0.013 15.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|126180388|ref|YP_001048353.1| - 0.011 15.6 0.0 0.012 15.5 0.0 1.1 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.6 gi|126180388|ref|YP_001048353.1| - 0.025 14.6 0.0 0.033 14.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_r4_2 PF08281.12 gi|126180388|ref|YP_001048353.1| - 0.032 13.9 0.2 0.067 12.9 0.2 1.5 1 1 0 1 1 1 0 Sigma-70, region 4 TFIIE_alpha PF02002.17 gi|126180388|ref|YP_001048353.1| - 0.044 13.6 0.1 0.27 11.1 0.2 1.8 1 1 1 2 2 2 0 TFIIE alpha subunit HTH_Crp_2 PF13545.6 gi|126180388|ref|YP_001048353.1| - 0.044 13.8 0.0 0.053 13.5 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|126180388|ref|YP_001048353.1| - 0.096 12.5 0.4 0.16 11.9 0.4 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain GntR PF00392.21 gi|126180388|ref|YP_001048353.1| - 0.1 12.2 0.1 0.14 11.8 0.1 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family dTDP_sugar_isom PF00908.17 gi|126180389|ref|YP_001048354.1| - 0.027 14.1 0.0 0.039 13.6 0.0 1.2 1 0 0 1 1 1 0 dTDP-4-dehydrorhamnose 3,5-epimerase Pab87_oct PF13969.6 gi|126180389|ref|YP_001048354.1| - 0.059 13.4 0.3 0.75 9.9 0.1 2.1 1 1 1 2 2 2 0 Pab87 octamerisation domain Transp_cyt_pur PF02133.15 gi|126180391|ref|YP_001048356.1| - 6.7e-22 77.9 38.0 1.3e-21 76.9 38.0 1.4 1 1 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin FeThRed_B PF02943.15 gi|126180392|ref|YP_001048357.1| - 3.1e-22 78.6 0.0 3.1e-22 78.6 0.0 1.5 2 0 0 2 2 2 1 Ferredoxin thioredoxin reductase catalytic beta chain NRDD PF13597.6 gi|126180392|ref|YP_001048357.1| - 0.17 10.6 0.9 0.22 10.2 0.9 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Glutaredoxin PF00462.24 gi|126180393|ref|YP_001048358.1| - 7.9e-12 45.2 0.2 1.3e-11 44.6 0.0 1.4 2 0 0 2 2 2 1 Glutaredoxin GST_N_3 PF13417.6 gi|126180393|ref|YP_001048358.1| - 0.0018 18.7 0.0 0.0024 18.2 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|126180393|ref|YP_001048358.1| - 0.026 14.8 0.0 0.034 14.5 0.0 1.1 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Lactamase_B PF00753.27 gi|126180394|ref|YP_001048359.1| - 4e-14 53.1 0.8 1.1e-13 51.7 0.8 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|126180394|ref|YP_001048359.1| - 0.0013 18.3 0.1 0.0026 17.3 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Gp5_C PF06715.12 gi|126180395|ref|YP_001048360.1| - 0.89 9.8 6.5 0.23 11.7 2.1 2.3 2 0 0 2 2 2 0 Gp5 C-terminal repeat (3 copies) AMP-binding PF00501.28 gi|126180396|ref|YP_001048361.1| - 3.8e-15 55.4 0.0 5e-15 55.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme SIS_2 PF13580.6 gi|126180396|ref|YP_001048361.1| - 0.049 13.7 0.0 0.095 12.7 0.0 1.4 1 0 0 1 1 1 0 SIS domain Na_sulph_symp PF00939.19 gi|126180397|ref|YP_001048362.1| - 1e-80 272.1 48.7 1.3e-80 271.8 48.7 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|126180397|ref|YP_001048362.1| - 2.1e-41 142.1 91.5 4e-36 124.8 52.4 2.8 1 1 2 3 3 3 2 Citrate transporter NapE PF06796.11 gi|126180397|ref|YP_001048362.1| - 0.081 12.5 3.0 1.3 8.6 0.3 3.7 2 0 0 2 2 2 0 Periplasmic nitrate reductase protein NapE DUF3821 PF12863.7 gi|126180398|ref|YP_001048363.1| - 2.2e-33 115.9 0.0 3.1e-33 115.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3821) MGC-24 PF05283.11 gi|126180398|ref|YP_001048363.1| - 9 6.7 9.9 14 6.1 9.9 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin HEAT_2 PF13646.6 gi|126180399|ref|YP_001048364.1| - 4.2e-15 55.9 2.8 6.1e-15 55.4 2.5 1.4 1 1 0 1 1 1 1 HEAT repeats HEAT_PBS PF03130.16 gi|126180399|ref|YP_001048364.1| - 1.5e-10 40.7 11.8 4.2e-05 23.8 0.2 3.3 3 0 0 3 3 3 3 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|126180399|ref|YP_001048364.1| - 3.3e-09 36.2 4.1 6.2e-05 22.9 0.0 3.2 3 0 0 3 3 3 2 HEAT repeat Arm PF00514.23 gi|126180399|ref|YP_001048364.1| - 2e-08 34.0 0.7 9.7e-06 25.4 0.1 2.5 1 1 1 2 2 2 2 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.6 gi|126180399|ref|YP_001048364.1| - 1.1e-05 25.8 8.5 0.0043 17.5 4.0 2.9 2 1 0 2 2 2 2 HEAT-like repeat Cnd1 PF12717.7 gi|126180399|ref|YP_001048364.1| - 0.00082 19.4 0.0 0.0014 18.7 0.0 1.4 1 1 0 1 1 1 1 non-SMC mitotic condensation complex subunit 1 STAS PF01740.21 gi|126180400|ref|YP_001048365.1| - 1.1e-11 44.4 0.0 1.3e-11 44.1 0.0 1.1 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.6 gi|126180400|ref|YP_001048365.1| - 2.5e-07 30.9 0.7 3.6e-07 30.4 0.7 1.3 1 0 0 1 1 1 1 STAS domain DUF333 PF03891.15 gi|126180401|ref|YP_001048366.1| - 1.4e-20 73.2 0.2 1.4e-20 73.2 0.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF333) PapC_C PF13953.6 gi|126180401|ref|YP_001048366.1| - 0.0092 15.8 1.4 43 4.0 0.0 4.7 4 1 1 5 5 5 0 PapC C-terminal domain DNA_RNApol_7kD PF03604.13 gi|126180401|ref|YP_001048366.1| - 0.046 13.4 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF2177 PF09945.9 gi|126180401|ref|YP_001048366.1| - 0.11 12.5 2.6 1.6 8.9 0.0 2.7 3 0 0 3 3 3 0 Predicted membrane protein (DUF2177) Cuticle_1 PF08140.11 gi|126180401|ref|YP_001048366.1| - 0.29 11.2 3.8 5.6 7.1 0.0 4.6 6 0 0 6 6 6 0 Crustacean cuticle protein repeat Big_3_5 PF16640.5 gi|126180401|ref|YP_001048366.1| - 5.9 7.2 9.0 17 5.7 1.7 3.7 4 1 1 5 5 5 0 Bacterial Ig-like domain (group 3) DUF2207 PF09972.9 gi|126180402|ref|YP_001048367.1| - 2.2e-74 251.0 0.0 3.4e-74 250.4 0.0 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) LemA PF04011.12 gi|126180403|ref|YP_001048368.1| - 1.3e-42 145.2 0.0 1.6e-42 144.9 0.0 1.1 1 0 0 1 1 1 1 LemA family Cep57_MT_bd PF06657.13 gi|126180403|ref|YP_001048368.1| - 0.051 14.0 0.0 0.13 12.8 0.0 1.7 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 DUF3453 PF11935.8 gi|126180403|ref|YP_001048368.1| - 0.077 12.6 0.1 4.6 6.8 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3453) DUF4083 PF13314.6 gi|126180403|ref|YP_001048368.1| - 0.082 12.9 1.6 0.18 11.8 1.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) Trp_repressor PF01371.19 gi|126180403|ref|YP_001048368.1| - 0.1 12.8 0.2 3.4 7.9 0.0 2.3 2 0 0 2 2 2 0 Trp repressor protein PAS_4 PF08448.10 gi|126180404|ref|YP_001048369.1| - 8.5e-52 174.1 2.1 1.3e-14 54.4 0.0 4.2 4 0 0 4 4 4 4 PAS fold PAS PF00989.25 gi|126180404|ref|YP_001048369.1| - 4.7e-38 129.7 0.0 4.5e-11 42.7 0.0 4.3 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|126180404|ref|YP_001048369.1| - 4.2e-36 123.4 0.0 6.5e-10 39.2 0.0 4.2 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.12 gi|126180404|ref|YP_001048369.1| - 1.4e-26 92.6 0.0 5.7e-11 42.6 0.0 4.3 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.7 gi|126180404|ref|YP_001048369.1| - 7.3e-22 76.9 1.1 4.2e-05 23.4 0.1 4.5 4 0 0 4 4 4 4 PAS domain HTH_IclR PF09339.10 gi|126180404|ref|YP_001048369.1| - 7.2e-09 35.3 0.6 1.9e-08 34.0 0.1 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|126180404|ref|YP_001048369.1| - 1.4e-06 27.8 0.0 3.4e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|126180404|ref|YP_001048369.1| - 3.5e-05 23.6 0.0 0.00011 22.0 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|126180404|ref|YP_001048369.1| - 0.00012 21.9 0.1 0.00032 20.5 0.1 1.8 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|126180404|ref|YP_001048369.1| - 0.00018 21.2 0.0 0.00064 19.4 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.7 gi|126180404|ref|YP_001048369.1| - 0.00023 21.2 0.3 0.0027 17.8 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|126180404|ref|YP_001048369.1| - 0.00026 21.0 0.1 0.002 18.2 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix TBPIP PF07106.13 gi|126180404|ref|YP_001048369.1| - 0.00068 19.5 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain MarR PF01047.22 gi|126180404|ref|YP_001048369.1| - 0.00075 19.4 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_31 PF13560.6 gi|126180404|ref|YP_001048369.1| - 0.0019 18.5 0.1 0.015 15.6 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain DUF977 PF06163.11 gi|126180404|ref|YP_001048369.1| - 0.0023 17.9 0.0 0.005 16.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_28 PF13518.6 gi|126180404|ref|YP_001048369.1| - 0.0048 17.0 0.1 0.027 14.6 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|126180404|ref|YP_001048369.1| - 0.0083 16.0 0.0 0.025 14.5 0.0 1.8 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.6 gi|126180404|ref|YP_001048369.1| - 0.0089 16.0 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|126180404|ref|YP_001048369.1| - 0.013 15.9 0.0 0.03 14.8 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_AsnC-type PF13404.6 gi|126180404|ref|YP_001048369.1| - 0.022 14.6 0.1 0.07 13.0 0.1 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|126180404|ref|YP_001048369.1| - 0.025 14.5 0.1 0.16 11.9 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|126180404|ref|YP_001048369.1| - 0.03 14.3 0.0 0.27 11.3 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|126180404|ref|YP_001048369.1| - 0.032 14.3 0.0 0.1 12.6 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.6 gi|126180404|ref|YP_001048369.1| - 0.034 13.5 0.0 0.086 12.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.12 gi|126180404|ref|YP_001048369.1| - 0.046 13.5 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain PAS_12 PF18095.1 gi|126180404|ref|YP_001048369.1| - 0.085 12.5 0.0 18 4.9 0.0 2.9 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain HTH_38 PF13936.6 gi|126180404|ref|YP_001048369.1| - 0.099 12.4 0.0 0.31 10.8 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain NUMOD1 PF07453.13 gi|126180404|ref|YP_001048369.1| - 0.11 12.8 1.1 0.26 11.6 0.0 2.3 3 0 0 3 3 1 0 NUMOD1 domain HTH_7 PF02796.15 gi|126180404|ref|YP_001048369.1| - 0.12 12.5 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase STAS PF01740.21 gi|126180405|ref|YP_001048370.1| - 6.1e-16 58.1 0.0 6.8e-16 58.0 0.0 1.0 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.6 gi|126180405|ref|YP_001048370.1| - 8.8e-09 35.6 0.2 1.1e-08 35.3 0.2 1.1 1 0 0 1 1 1 1 STAS domain SpoIIE PF07228.12 gi|126180406|ref|YP_001048371.1| - 1.1e-54 185.4 0.0 1.7e-54 184.7 0.0 1.3 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) 5TM-5TMR_LYT PF07694.12 gi|126180406|ref|YP_001048371.1| - 1.7e-44 151.3 18.7 1.7e-44 151.3 18.7 1.5 2 0 0 2 2 2 1 5TMR of 5TMR-LYT HATPase_c_2 PF13581.6 gi|126180407|ref|YP_001048372.1| - 4.3e-29 101.0 0.0 4.9e-29 100.8 0.0 1.0 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 gi|126180407|ref|YP_001048372.1| - 0.016 15.7 0.0 0.019 15.5 0.0 1.2 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Nuc_deoxyrib_tr PF05014.15 gi|126180408|ref|YP_001048373.1| - 2.4e-25 89.1 0.1 3.5e-25 88.5 0.1 1.3 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Nuc_deoxyri_tr2 PF15891.5 gi|126180408|ref|YP_001048373.1| - 4.1e-18 65.7 0.0 5.8e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase like DUF523 PF04463.12 gi|126180408|ref|YP_001048373.1| - 8.9e-07 29.0 0.0 1.5e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF523) Ribo_biogen_C PF04034.13 gi|126180409|ref|YP_001048374.1| - 1.4e-41 141.2 0.0 1.7e-41 140.9 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|126180409|ref|YP_001048374.1| - 6.7e-06 25.8 0.3 9.7e-06 25.3 0.3 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI DUF72 PF01904.18 gi|126180410|ref|YP_001048375.1| - 1.2e-35 123.6 0.0 1.5e-35 123.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 sCache_2 PF17200.4 gi|126180411|ref|YP_001048376.1| - 9e-39 132.8 1.6 2.1e-17 63.4 0.1 3.6 3 1 1 4 4 4 2 Single Cache domain 2 dCache_2 PF08269.11 gi|126180411|ref|YP_001048376.1| - 1.1e-31 110.1 0.0 1.1e-27 97.0 0.0 3.0 2 1 0 2 2 2 2 Cache domain dCache_1 PF02743.18 gi|126180411|ref|YP_001048376.1| - 5e-11 42.9 0.1 2.9e-10 40.4 0.0 2.2 3 0 0 3 3 3 1 Cache domain sCache_3_2 PF17203.4 gi|126180411|ref|YP_001048376.1| - 0.0096 16.1 0.5 10 6.3 0.0 4.0 3 1 0 4 4 4 1 Single cache domain 3 Methyltransf_25 PF13649.6 gi|126180412|ref|YP_001048377.1| - 3.8e-08 33.9 0.1 6.6e-08 33.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|126180412|ref|YP_001048377.1| - 2.6e-07 30.6 0.0 3.9e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|126180412|ref|YP_001048377.1| - 4e-07 29.6 0.0 5.3e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|126180412|ref|YP_001048377.1| - 1.9e-06 27.7 0.0 2.4e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|126180412|ref|YP_001048377.1| - 5.6e-06 26.2 0.0 6.9e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|126180412|ref|YP_001048377.1| - 7.9e-06 25.6 0.0 1.1e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_11 PF08241.12 gi|126180412|ref|YP_001048377.1| - 1.3e-05 25.8 0.0 1.9e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126180412|ref|YP_001048377.1| - 5.4e-05 23.9 0.0 7.7e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|126180412|ref|YP_001048377.1| - 0.0037 18.2 0.1 0.0069 17.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|126180412|ref|YP_001048377.1| - 0.0098 15.8 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|126180412|ref|YP_001048377.1| - 0.025 14.1 0.0 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|126180412|ref|YP_001048377.1| - 0.1 12.6 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|126180412|ref|YP_001048377.1| - 0.12 11.8 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Antibiotic_NAT PF02522.14 gi|126180412|ref|YP_001048377.1| - 0.2 11.4 0.0 0.37 10.5 0.0 1.4 1 0 0 1 1 1 0 Aminoglycoside 3-N-acetyltransferase PAS_4 PF08448.10 gi|126180413|ref|YP_001048378.1| - 1.7e-27 95.8 2.3 9.8e-10 38.7 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|126180413|ref|YP_001048378.1| - 2.7e-23 82.1 0.0 9.5e-09 35.3 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|126180413|ref|YP_001048378.1| - 1.5e-20 73.4 0.0 2.1e-06 27.9 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS_8 PF13188.7 gi|126180413|ref|YP_001048378.1| - 3.4e-17 62.0 0.8 1.7e-10 40.7 0.0 4.0 4 1 0 4 4 3 2 PAS domain PAS_7 PF12860.7 gi|126180413|ref|YP_001048378.1| - 7.5e-11 42.2 0.0 9.4e-05 22.6 0.0 4.4 4 1 0 4 4 3 3 PAS fold PAS_3 PF08447.12 gi|126180413|ref|YP_001048378.1| - 5.3e-09 36.2 0.0 0.00031 21.0 0.0 3.3 3 0 0 3 3 3 2 PAS fold HTH_20 PF12840.7 gi|126180413|ref|YP_001048378.1| - 5.2e-06 26.4 0.0 1.5e-05 25.0 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|126180413|ref|YP_001048378.1| - 0.00021 21.0 0.1 0.00051 19.8 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|126180413|ref|YP_001048378.1| - 0.00023 21.0 0.1 0.00063 19.6 0.1 1.8 1 0 0 1 1 1 1 MarR family GAF_2 PF13185.6 gi|126180413|ref|YP_001048378.1| - 0.00031 21.1 0.2 0.63 10.3 0.0 3.0 3 1 0 3 3 3 2 GAF domain HTH_5 PF01022.20 gi|126180413|ref|YP_001048378.1| - 0.0022 17.8 0.0 0.0062 16.4 0.0 1.8 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|126180413|ref|YP_001048378.1| - 0.0055 16.2 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|126180413|ref|YP_001048378.1| - 0.0062 16.4 0.0 0.018 14.9 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.6 gi|126180413|ref|YP_001048378.1| - 0.0079 16.6 0.0 0.032 14.7 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|126180413|ref|YP_001048378.1| - 0.011 15.5 0.5 0.03 14.1 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain KorB PF08535.10 gi|126180413|ref|YP_001048378.1| - 0.013 15.5 0.0 0.033 14.2 0.0 1.7 1 0 0 1 1 1 0 KorB domain HTH_Crp_2 PF13545.6 gi|126180413|ref|YP_001048378.1| - 0.015 15.3 0.0 0.046 13.7 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|126180413|ref|YP_001048378.1| - 0.059 13.3 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_10 PF04967.12 gi|126180413|ref|YP_001048378.1| - 0.085 12.7 0.0 0.27 11.1 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain HTH_23 PF13384.6 gi|126180413|ref|YP_001048378.1| - 0.11 12.3 0.0 0.39 10.6 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain MarR PF01047.22 gi|126180413|ref|YP_001048378.1| - 0.12 12.3 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|126180413|ref|YP_001048378.1| - 0.16 12.3 0.0 0.39 11.1 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HEAT_2 PF13646.6 gi|126180414|ref|YP_001048379.1| - 6.3e-13 48.9 12.8 1.9e-06 28.2 2.6 2.3 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.16 gi|126180414|ref|YP_001048379.1| - 1e-06 28.8 10.4 0.011 16.4 0.1 4.3 3 1 1 4 4 4 3 PBS lyase HEAT-like repeat Arm PF00514.23 gi|126180414|ref|YP_001048379.1| - 0.00011 22.2 0.3 0.22 11.6 0.0 3.7 4 0 0 4 4 4 1 Armadillo/beta-catenin-like repeat TarH PF02203.15 gi|126180416|ref|YP_001048381.1| - 0.37 10.7 3.5 0.17 11.8 0.7 1.7 2 0 0 2 2 2 0 Tar ligand binding domain homologue DUF3151 PF11349.8 gi|126180416|ref|YP_001048381.1| - 1.4 9.0 8.1 0.65 10.1 0.6 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF3151) DUF3417 PF11897.8 gi|126180418|ref|YP_001048383.1| - 7.5e-31 106.8 0.8 1.9e-30 105.5 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3417) Phosphorylase PF00343.20 gi|126180418|ref|YP_001048383.1| - 4.3e-28 98.0 0.0 2.9e-22 78.8 0.0 3.0 2 1 0 2 2 2 2 Carbohydrate phosphorylase 2TM PF13239.6 gi|126180419|ref|YP_001048384.1| - 7.9e-31 106.2 3.2 9e-31 106.0 3.2 1.0 1 0 0 1 1 1 1 2TM domain ABC_tran PF00005.27 gi|126180420|ref|YP_001048385.1| - 2e-23 83.4 0.0 2.6e-23 83.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126180420|ref|YP_001048385.1| - 6e-13 49.3 0.6 1e-08 35.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|126180420|ref|YP_001048385.1| - 0.0014 18.4 0.0 0.99 9.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|126180420|ref|YP_001048385.1| - 0.002 18.7 0.0 0.0029 18.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|126180420|ref|YP_001048385.1| - 0.011 15.5 0.1 0.019 14.7 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP_bind_1 PF03029.17 gi|126180420|ref|YP_001048385.1| - 0.017 14.9 0.0 0.031 14.0 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Mg_chelatase PF01078.21 gi|126180420|ref|YP_001048385.1| - 0.048 13.0 0.0 0.072 12.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI CLP1_P PF16575.5 gi|126180420|ref|YP_001048385.1| - 0.054 13.3 0.0 0.075 12.8 0.0 1.2 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_16 PF13191.6 gi|126180420|ref|YP_001048385.1| - 0.11 12.9 0.0 0.15 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 gi|126180420|ref|YP_001048385.1| - 0.12 12.0 0.0 0.32 10.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|126180420|ref|YP_001048385.1| - 0.14 11.5 0.1 0.92 8.9 0.1 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|126180420|ref|YP_001048385.1| - 0.16 11.6 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|126180420|ref|YP_001048385.1| - 0.18 12.1 0.0 0.27 11.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF2866 PF11065.8 gi|126180422|ref|YP_001048387.1| - 0.074 13.1 0.1 0.29 11.2 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2866) UPF0029 PF01205.19 gi|126180423|ref|YP_001048388.1| - 9.6e-22 77.3 0.0 1.1e-21 77.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DSPc PF00782.20 gi|126180424|ref|YP_001048389.1| - 8.4e-10 38.6 0.0 1.1e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Init_tRNA_PT PF04179.12 gi|126180424|ref|YP_001048389.1| - 0.015 15.6 0.0 0.02 15.2 0.0 1.2 1 0 0 1 1 1 0 Rit1 DUSP-like domain Y_phosphatase PF00102.27 gi|126180424|ref|YP_001048389.1| - 0.072 12.6 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein-tyrosine phosphatase ROK PF00480.20 gi|126180425|ref|YP_001048390.1| - 3e-58 197.6 0.0 3.5e-58 197.4 0.0 1.0 1 0 0 1 1 1 1 ROK family Hexokinase_1 PF00349.21 gi|126180425|ref|YP_001048390.1| - 0.054 13.4 0.0 0.077 12.9 0.0 1.2 1 0 0 1 1 1 0 Hexokinase DGOK PF05035.12 gi|126180425|ref|YP_001048390.1| - 0.1 11.5 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 2-keto-3-deoxy-galactonokinase FeoA PF04023.14 gi|126180426|ref|YP_001048391.1| - 1.3e-16 60.6 1.0 1.4e-16 60.5 1.0 1.0 1 0 0 1 1 1 1 FeoA domain Glyco_hydro_65C PF03633.15 gi|126180426|ref|YP_001048391.1| - 0.06 13.3 0.3 0.11 12.4 0.3 1.5 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain FeoB_N PF02421.18 gi|126180427|ref|YP_001048392.1| - 9.8e-49 164.9 0.0 1.4e-48 164.3 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|126180427|ref|YP_001048392.1| - 4.2e-25 88.2 22.6 1.5e-13 51.0 6.9 3.2 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|126180427|ref|YP_001048392.1| - 6.1e-17 61.8 0.1 1.2e-16 60.8 0.0 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|126180427|ref|YP_001048392.1| - 2.8e-11 42.9 0.7 2.8e-11 42.9 0.7 3.4 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus AIG1 PF04548.16 gi|126180427|ref|YP_001048392.1| - 0.011 15.1 0.0 0.015 14.6 0.0 1.2 1 0 0 1 1 1 0 AIG1 family Roc PF08477.13 gi|126180427|ref|YP_001048392.1| - 0.011 15.9 0.0 0.48 10.7 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase SRPRB PF09439.10 gi|126180427|ref|YP_001048392.1| - 0.042 13.3 0.0 0.067 12.6 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Fe_dep_repr_C PF02742.15 gi|126180428|ref|YP_001048393.1| - 4.5e-20 71.5 0.4 7.7e-20 70.7 0.4 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|126180428|ref|YP_001048393.1| - 7.8e-17 61.2 0.1 1.3e-16 60.5 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|126180428|ref|YP_001048393.1| - 1.2e-07 31.6 0.0 2.2e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|126180428|ref|YP_001048393.1| - 1.5e-06 28.0 0.2 1e-05 25.3 0.0 2.1 1 1 1 2 2 2 1 MarR family HTH_24 PF13412.6 gi|126180428|ref|YP_001048393.1| - 2.3e-06 27.1 0.2 4.3e-06 26.2 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|126180428|ref|YP_001048393.1| - 2.7e-05 23.9 0.0 0.00013 21.7 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|126180428|ref|YP_001048393.1| - 0.00022 20.9 0.1 0.00078 19.2 0.0 2.0 3 0 0 3 3 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|126180428|ref|YP_001048393.1| - 0.00054 19.9 0.0 0.0016 18.3 0.0 1.9 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|126180428|ref|YP_001048393.1| - 0.00089 19.1 0.0 0.002 18.0 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|126180428|ref|YP_001048393.1| - 0.00097 19.4 0.0 0.0017 18.6 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator HTH_12 PF08461.10 gi|126180428|ref|YP_001048393.1| - 0.0034 17.3 0.1 0.0064 16.4 0.1 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain GntR PF00392.21 gi|126180428|ref|YP_001048393.1| - 0.0044 16.6 0.0 0.0083 15.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|126180428|ref|YP_001048393.1| - 0.0056 17.2 0.1 0.03 14.8 0.0 2.2 3 0 0 3 3 2 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|126180428|ref|YP_001048393.1| - 0.013 15.4 0.0 0.028 14.4 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn-helix B-block_TFIIIC PF04182.12 gi|126180428|ref|YP_001048393.1| - 0.016 15.4 0.0 0.021 15.0 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_10 PF04967.12 gi|126180428|ref|YP_001048393.1| - 0.025 14.4 0.0 0.11 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_AsnC-type PF13404.6 gi|126180428|ref|YP_001048393.1| - 0.065 13.1 0.4 0.17 11.8 0.1 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain BLACT_WH PF17778.1 gi|126180428|ref|YP_001048393.1| - 0.071 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain HTH_47 PF16221.5 gi|126180428|ref|YP_001048393.1| - 0.12 11.9 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 winged helix-turn-helix HTH_CodY PF08222.11 gi|126180428|ref|YP_001048393.1| - 0.14 11.7 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 CodY helix-turn-helix domain HxlR PF01638.17 gi|126180428|ref|YP_001048393.1| - 0.15 12.0 0.0 0.29 11.0 0.0 1.4 1 1 0 1 1 1 0 HxlR-like helix-turn-helix FeoC PF09012.10 gi|126180428|ref|YP_001048393.1| - 0.15 12.1 0.0 1.7 8.8 0.0 2.2 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_1 PF00126.27 gi|126180428|ref|YP_001048393.1| - 0.23 11.4 1.8 0.45 10.5 0.0 2.5 2 1 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family KTSC PF13619.6 gi|126180429|ref|YP_001048394.1| - 2.7e-18 65.5 0.0 3.2e-18 65.3 0.0 1.1 1 0 0 1 1 1 1 KTSC domain KTSC PF13619.6 gi|126180430|ref|YP_001048395.1| - 2.8e-26 91.1 0.1 3.4e-26 90.8 0.1 1.1 1 0 0 1 1 1 1 KTSC domain DUF5335 PF17269.2 gi|126180430|ref|YP_001048395.1| - 0.17 11.8 0.0 0.19 11.6 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5335) Citrate_synt PF00285.21 gi|126180430|ref|YP_001048395.1| - 0.2 10.7 0.0 0.21 10.6 0.0 1.0 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain NMO PF03060.15 gi|126180433|ref|YP_001048398.1| - 0.0039 16.6 0.0 0.0041 16.6 0.0 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase Acetyltransf_3 PF13302.7 gi|126180434|ref|YP_001048399.1| - 2.1e-29 103.0 0.0 2.6e-29 102.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|126180434|ref|YP_001048399.1| - 1e-10 41.9 0.1 1.5e-10 41.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|126180434|ref|YP_001048399.1| - 0.049 13.8 0.0 0.054 13.6 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|126180434|ref|YP_001048399.1| - 0.085 13.3 0.1 0.12 12.8 0.1 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Gp_dh_C PF02800.20 gi|126180435|ref|YP_001048400.1| - 4.7e-25 88.0 0.0 8e-25 87.3 0.0 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|126180435|ref|YP_001048400.1| - 9.3e-12 45.2 0.1 2e-11 44.1 0.1 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|126180435|ref|YP_001048400.1| - 2.8e-07 30.8 0.2 1.1e-06 28.8 0.1 2.2 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|126180435|ref|YP_001048400.1| - 0.00014 21.3 0.1 0.0079 15.6 0.1 2.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|126180435|ref|YP_001048400.1| - 0.00037 20.7 1.5 0.00089 19.5 0.3 2.2 3 0 0 3 3 3 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|126180435|ref|YP_001048400.1| - 0.00049 20.4 0.1 0.00086 19.6 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Semialdhyde_dh PF01118.24 gi|126180435|ref|YP_001048400.1| - 0.0016 18.9 0.1 0.0038 17.7 0.1 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|126180435|ref|YP_001048400.1| - 0.0072 17.0 0.1 0.018 15.7 0.1 1.7 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|126180435|ref|YP_001048400.1| - 0.016 16.0 0.3 0.087 13.6 0.1 2.4 3 1 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold tRNA-synt_1b PF00579.25 gi|126180436|ref|YP_001048401.1| - 3e-55 187.6 0.0 3.8e-55 187.3 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|126180436|ref|YP_001048401.1| - 2.3e-05 23.5 0.1 0.16 10.9 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) RIO1 PF01163.22 gi|126180437|ref|YP_001048402.1| - 2.2e-57 193.7 0.0 2.8e-57 193.3 0.0 1.1 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|126180437|ref|YP_001048402.1| - 0.00039 20.4 0.0 0.0012 18.9 0.0 1.7 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 gi|126180437|ref|YP_001048402.1| - 0.014 14.2 0.0 0.019 13.8 0.0 1.1 1 0 0 1 1 1 0 Fungal protein kinase Pkinase PF00069.25 gi|126180437|ref|YP_001048402.1| - 0.015 14.7 0.0 0.031 13.7 0.0 1.5 1 0 0 1 1 1 0 Protein kinase domain Kdo PF06293.14 gi|126180437|ref|YP_001048402.1| - 0.016 14.6 0.0 2.6 7.3 0.0 2.2 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family DUF1419 PF07215.11 gi|126180437|ref|YP_001048402.1| - 0.051 13.7 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1419) Choline_kinase PF01633.20 gi|126180437|ref|YP_001048402.1| - 0.13 11.8 0.0 0.38 10.3 0.0 1.7 1 1 1 2 2 2 0 Choline/ethanolamine kinase KH_1 PF00013.29 gi|126180438|ref|YP_001048403.1| - 1.7e-15 56.6 6.6 2e-08 33.9 0.7 2.3 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|126180438|ref|YP_001048403.1| - 0.0028 17.4 5.7 0.0086 15.9 0.8 2.5 3 0 0 3 3 3 1 KH domain KH_8 PF17903.1 gi|126180438|ref|YP_001048403.1| - 0.12 12.5 0.0 0.33 11.1 0.0 1.7 2 0 0 2 2 2 0 Krr1 KH1 domain KH_4 PF13083.6 gi|126180438|ref|YP_001048403.1| - 0.27 11.1 3.2 2.2 8.2 0.1 2.8 2 1 0 2 2 2 0 KH domain DEAD PF00270.29 gi|126180439|ref|YP_001048404.1| - 2.4e-23 82.8 0.0 5.8e-23 81.6 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|126180439|ref|YP_001048404.1| - 4e-10 40.0 0.0 7.8e-09 35.9 0.0 2.7 2 1 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|126180439|ref|YP_001048404.1| - 1.1e-06 28.8 0.0 1.6e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|126180439|ref|YP_001048404.1| - 2.9e-06 27.8 0.1 1e-05 26.0 0.1 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|126180439|ref|YP_001048404.1| - 0.00031 20.5 0.0 0.00087 19.1 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Sec63 PF02889.16 gi|126180439|ref|YP_001048404.1| - 0.00063 19.0 0.0 0.00091 18.5 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain DELLA PF12041.8 gi|126180439|ref|YP_001048404.1| - 0.12 12.3 0.0 0.48 10.4 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator DELLA protein N terminal DUF4332 PF14229.6 gi|126180439|ref|YP_001048404.1| - 0.2 11.9 0.0 0.52 10.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) Bclx_interact PF08945.10 gi|126180440|ref|YP_001048405.1| - 0.099 12.4 0.2 0.25 11.2 0.2 1.7 1 0 0 1 1 1 0 Bcl-x interacting, BH3 domain CGI-121 PF08617.10 gi|126180440|ref|YP_001048405.1| - 0.11 12.6 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Kinase binding protein CGI-121 MoCF_biosynth PF00994.24 gi|126180441|ref|YP_001048406.1| - 1.3e-36 125.4 0.6 1.5e-36 125.3 0.6 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanoculleus_marisnigri_JR1_uid58561/NC_009051.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanoculleus_marisnigri_JR1_uid58561/NC_009051.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanoculleus_marisnigri_JR1_uid58561/NC_009051.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanoculleus_marisnigri_JR1_uid58561/NC_009051.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:02:07 2019 # [ok]